BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein
[Candidatus Liberibacter asiaticus str. psy62]
         (594 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780399|ref|YP_003064812.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040076|gb|ACT56872.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 594

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 594/594 (100%), Positives = 594/594 (100%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG
Sbjct: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ
Sbjct: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP
Sbjct: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP
Sbjct: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH
Sbjct: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT
Sbjct: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS
Sbjct: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL
Sbjct: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
           HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM
Sbjct: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR
Sbjct: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594


>gi|53804020|ref|YP_114135.1| DNA mismatch repair protein [Methylococcus capsulatus str. Bath]
 gi|53757781|gb|AAU92072.1| DNA mismatch repair protein MutL [Methylococcus capsulatus str.
           Bath]
          Length = 611

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 217/598 (36%), Positives = 345/598 (57%), Gaps = 5/598 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+IR+L  ++INQIAAGE+IERP+  +KEL+EN+ DA + +VE  +  GG    ++ D+G
Sbjct: 13  MRIRRLPPQLINQIAAGEVIERPASVVKELVENAFDAGARQVEVDVEQGGVRLIRVRDDG 72

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKI+  +D   + + GFRGEALPSI AV+ LTL SR      G
Sbjct: 73  CGIDREDLGLALSRHATSKIASLEDLERVASMGFRGEALPSISAVARLTLTSRTADVPCG 132

Query: 119 AQIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q++  G +    ++P     GT VEVRDLF+  PAR  FL++E+ E   I  +++RMA+
Sbjct: 133 WQVSADGSESDFDIQPAQHAQGTTVEVRDLFYNTPARRKFLRAEKTEFGHIQTLVQRMAL 192

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V F     +    ++   +  G  PERI  + G DF+  A+ +  +++ + L G+ 
Sbjct: 193 ARFDVGFRLRHNQREVLRLQPDAEEGGRPERIGALCGPDFLEQALRVEFEASGLRLHGWV 252

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R  A+  + ++N R ++DK +   IR AY + +   R PV VL LEIDP  VDV
Sbjct: 253 GLPTFSRSQADLQFFYVNHRPIRDKLVGHAIRQAYQDVLYHQRQPVYVLYLEIDPALVDV 312

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           N HPAK  +RFR   ++ +F+  ++ +AI       ++ +     +      A +    +
Sbjct: 313 NAHPAKLEVRFREGRMVHDFLFSALHRAIAGHRPGRTASVVAAPATEHPAPLAEQPQQSQ 372

Query: 358 YA-TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                +  T ++ +L      T   L     + S  N     +E     LG A A +   
Sbjct: 373 QPLFRVAETPQRPYLSSGDSETLGDLRRL-YSVSLPNPTETRAEQEIPPLGYALAHLKGV 431

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI+++   GL++VD HAAHER+ +E+M++ + +  I SQ LL P  I L   +  L  E+
Sbjct: 432 YILAENAQGLILVDGHAAHERITYERMKRQYQAGGIASQPLLLPVRIRLSRADADLAEEY 491

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L RLGI+  R G  ++ +R +PA+L   ++ +L+RD + ++ +  ++  LQ+ +  +
Sbjct: 492 GEHLARLGIELRRTGEGSVLVRSVPALLEGSDVERLVRDTLADLREHGSSGRLQETLNTV 551

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LA+MAC+GS+R+GRK+   EMN LLREME    + QCNHGRPT+++L    +++LF R
Sbjct: 552 LASMACHGSVRAGRKLTVPEMNALLREMEATERAGQCNHGRPTWVQLDTQALDRLFLR 609


>gi|83648044|ref|YP_436479.1| DNA mismatch repair protein [Hahella chejuensis KCTC 2396]
 gi|83636087|gb|ABC32054.1| DNA mismatch repair enzyme (predicted ATPase) [Hahella chejuensis
           KCTC 2396]
          Length = 612

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 214/608 (35%), Positives = 354/608 (58%), Gaps = 15/608 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS ++ NQIAAGE++ERPS  +KEL+EN+LDA + ++E  I  GG    +I D+G 
Sbjct: 3   KIHLLSPRLANQIAAGEVVERPSSVVKELVENALDAGARKIEVDIENGGVKLIRIRDDGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A+ RH TSKI   +D   + T GFRGEAL SI +VS L L SRP       
Sbjct: 63  GIPREDLPLALSRHATSKIETLEDLEAVATLGFRGEALASICSVSRLALTSRPQNQGEAW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++ + G ++     P A  PGT VEVRDLF+  PAR  F+++E+ E   I ++I+R A+ 
Sbjct: 123 KVEVEGREMKPEISPAAHTPGTTVEVRDLFYNTPARRKFMRTEKTEFGHIEEIIKRQALG 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+FT    +   +++   ++  +   RI Q+ G +FI +A+ +N  ++ ++L G+  
Sbjct: 183 RLSVAFTLRHNQKVVHQLRPAASEEDHIRRIGQLCGANFIESAIPINVSASGLSLTGWVA 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PTF+R  A+  Y F+NGR ++DK +   +R AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 243 KPTFSRSQADLQYFFVNGRVIRDKLVAHAVRQAYQDVLYHGRHPAFVLYLELDPATVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-------QDNAP 351
           VHP K  +RFR   ++ +F+ +S+ +A+ +     ++V +  ++           QD  P
Sbjct: 303 VHPTKHEVRFREGRMVHDFLFRSLHRALAEVKPQAAAVETLPVVEQERPVMQWPTQDALP 362

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-----SEATHYQL 406
               P  +              +++S    L              E+      +A    L
Sbjct: 363 LRQQPAASGFSMTGNPPASAVRDQISAYGQLHDKSGLSDMFGAAPEKVLSVVDDAVEAPL 422

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A AQ+H  ++++Q   G+V+VD HAAHER+++E+M++  +++ +T+Q +L P  + + 
Sbjct: 423 GYAIAQLHGVFVLAQNAQGMVLVDMHAAHERIVYERMKRSLHNSGVTTQPMLVPMNLAVS 482

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             E   + E+ E L +LG++    G  +I +R++PA+L   N+  L+RD+I E+ +  +T
Sbjct: 483 RRESLAVEENAETLRQLGLEITAAGAESIIVRQVPALLRNANVEALVRDVIAELAEHGST 542

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             +++ +  +L TMAC+G++R+ R++   EMN LLR+ME    S QCNHGRPT+++L +S
Sbjct: 543 RKVEETMNELLGTMACHGAVRANRQLTIAEMNALLRDMEDTERSGQCNHGRPTWVQLTMS 602

Query: 587 DIEKLFGR 594
           +++KLF R
Sbjct: 603 ELDKLFLR 610


>gi|327482309|gb|AEA85619.1| DNA mismatch repair protein [Pseudomonas stutzeri DSM 4166]
          Length = 625

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 218/618 (35%), Positives = 351/618 (56%), Gaps = 25/618 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R+E  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVIKELLENSLDSGAGRIEVDVEQGGVKLLRVRDDGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI D  D   + + GFRGEAL SI +VS LTL SR    +   
Sbjct: 66  GIPPDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVSRLTLTSRTADASEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G ++ +  +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGREMEARVQPAAHPVGTSVEVRDLFFNTPARRKFLRTEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++  + +     R++ V G  F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKGVLALHQANDDSARARRVAAVCGPAFLEQALPIEIERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL L++DP  VDVN
Sbjct: 246 LPTFSRSQADLQYFYVNGRMVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLDVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      ++     S     ++      + A +
Sbjct: 306 VHPTKHEVRFRDSRMVHDFLYGTLHRALGDVRPEDQLAAPASVAPMTQVSGLAAGEFAGQ 365

Query: 353 THLPKYATSLTNTQEKLFL--------QENRLSTNDLLPSDDPTYSEDNDPVEES----- 399
           + +   A+ L   Q +           Q  R ++          Y E   P+ ES     
Sbjct: 366 SEMSLSASVLERPQGETSAWRGAGAGYQAPRPASAGYTAEAQGAYREFFTPLPESAAAPL 425

Query: 400 ---EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
              +     LG A AQ+   YI+++   G+V+VD HAAHER+ +E+++    S  +  Q 
Sbjct: 426 PASQDDVPPLGYALAQLKGVYILAENAQGMVLVDMHAAHERITYERLKTAMASEGLRGQP 485

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PE I L + E     EH +    LG + +R GP  +AIR+IP++L +    QL+RD+
Sbjct: 486 LLVPESIALSQREADCAEEHAQWFQMLGFELQRLGPETLAIRQIPSLLKQAEATQLVRDV 545

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + ++++  T+  +Q  +  +LATMAC+G++R+ R++   EMN LLR+ME    S QCNHG
Sbjct: 546 LADLLEYGTSDRIQAHLNELLATMACHGAVRANRRLTLPEMNALLRDMEHTERSGQCNHG 605

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ +L + D++KLF R
Sbjct: 606 RPTWTQLGMDDLDKLFLR 623


>gi|146283982|ref|YP_001174135.1| DNA mismatch repair protein [Pseudomonas stutzeri A1501]
 gi|167017345|sp|A4VQP2|MUTL_PSEU5 RecName: Full=DNA mismatch repair protein mutL
 gi|145572187|gb|ABP81293.1| DNA mismatch repair protein MutL [Pseudomonas stutzeri A1501]
          Length = 625

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 218/618 (35%), Positives = 350/618 (56%), Gaps = 25/618 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R+E  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVIKELLENSLDSGAGRIEVDVEQGGVKLLRVRDDGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI D  D   + + GFRGEAL SI +VS LTL SR    +   
Sbjct: 66  GIPPDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVSRLTLTSRTADASEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G ++ +  +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGREMEARVQPAAHPVGTSVEVRDLFFNTPARRKFLRTEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++  + +     R++ V G  F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKGVLALHQANDDSARARRVAAVCGPAFLEQALPIEIERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL L++DP  VDVN
Sbjct: 246 LPTFSRSQADLQYFYVNGRMVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLDVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      ++     S     ++      + A +
Sbjct: 306 VHPTKHEVRFRDSRMVHDFLYGTLHRALGDVRPEDQLAAPASVAPMTQVSGLAAGEFAGQ 365

Query: 353 THLPKYATSLTNTQEK--------LFLQENRLSTNDLLPSDDPTYSEDNDPVEES----- 399
             +   A+ L   Q +           Q  R ++          Y E   P+ ES     
Sbjct: 366 NEMSLSASVLERPQGETPAWRGAGAGYQAPRPASAGYTAEAQGAYREFFTPLPESAAAPL 425

Query: 400 ---EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
              +     LG A AQ+   YI+++   G+V+VD HAAHER+ +E+++    S  +  Q 
Sbjct: 426 PASQDDVPPLGYALAQLKGVYILAENAQGMVLVDMHAAHERITYERLKTAMASEGLRGQP 485

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PE I L + E     EH +    LG + +R GP  +AIR+IP++L +    QL+RD+
Sbjct: 486 LLVPESIALSQREADCAEEHAQWFQMLGFELQRLGPETLAIRQIPSLLKQAEATQLVRDV 545

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + ++++  T+  +Q  +  +LATMAC+G++R+ R++   EMN LLR+ME    S QCNHG
Sbjct: 546 LADLLEYGTSDRIQAHLNELLATMACHGAVRANRRLTLPEMNALLRDMEHTERSGQCNHG 605

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ +L + D++KLF R
Sbjct: 606 RPTWTQLGMDDLDKLFLR 623


>gi|146305668|ref|YP_001186133.1| DNA mismatch repair protein [Pseudomonas mendocina ymp]
 gi|145573869|gb|ABP83401.1| DNA mismatch repair protein MutL [Pseudomonas mendocina ymp]
          Length = 623

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 216/619 (34%), Positives = 340/619 (54%), Gaps = 26/619 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 3   RIHLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDVEVEQGGVKLLKVRDDGG 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI +VS LTL SR    +   
Sbjct: 63  GIAADDLPLALARHATSKIRELEDLEAVLSMGFRGEALASISSVSRLTLTSRTADADQAW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 123 QVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRAEKTEFDHLQEVIKRLALA 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F         + ++      +   R++ V G  F+  A+ +  +   + L G+ G
Sbjct: 183 RFDVAFHLRHNGKTVFALHEAGDEISRARRVAAVCGPAFLEQALPIEIERGGLRLWGWVG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL LEIDP  VDVN
Sbjct: 243 LPTFSRSQADLQYFYVNGRMVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLEIDPSTVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS----------SFHQD 348
           VHP K  +RFR+  ++ +F+  ++ +A+              ++            F   
Sbjct: 303 VHPTKHEVRFRDSRMVHDFLYGTLHRALADVRPEDQVAAPAAVMPMVRATGLAAGEFGPQ 362

Query: 349 NAPKTHLPKYATSLTNTQEK-----LFLQENRLSTNDLLPSDDPTYSED--------NDP 395
                      T + N Q          Q+   S    +      Y E           P
Sbjct: 363 GEMGLAASVLETPVANPQPAWRGAGAGYQQPAGSPGVPVAEAQAAYREYFAPLPGAQPAP 422

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
           + + +     LG A AQ+   YI+++   G+V+VD HAAHER+ +E+++Q   S  +  Q
Sbjct: 423 LPQEQGDIPPLGYAVAQLKGVYILAENAQGMVVVDMHAAHERITYERLKQAMASEGLRGQ 482

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PE I L + E     EH E   RLG + +R G   +AIR+IPA+L +    QL+RD
Sbjct: 483 PLLVPESIALSQREADCAEEHGEWFQRLGFELQRLGEETVAIRQIPALLKQAEATQLVRD 542

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++++  T+  +Q  +  +LATMAC+G++R+ R++   EMN LLR+ME+   S QCNH
Sbjct: 543 VLADLLEYGTSDRIQAHLNELLATMACHGAVRANRRLTLPEMNALLRDMEQTERSGQCNH 602

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ +L + D++KLF R
Sbjct: 603 GRPTWTQLGMDDLDKLFLR 621


>gi|192359923|ref|YP_001983535.1| DNA mismatch repair protein [Cellvibrio japonicus Ueda107]
 gi|238692427|sp|B3PDC3|MUTL_CELJU RecName: Full=DNA mismatch repair protein mutL
 gi|190686088|gb|ACE83766.1| DNA mismatch repair protein MutL [Cellvibrio japonicus Ueda107]
          Length = 626

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 222/619 (35%), Positives = 333/619 (53%), Gaps = 26/619 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ LS ++ NQIAAGE++ERPS  IKEL+ENSLDA ++R++  I  GG    ++ DNG 
Sbjct: 6   KIKLLSPRLANQIAAGEVVERPSSVIKELLENSLDAGATRLDIEIEDGGIKLMRVRDNGG 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI   DD   + T GFRGEAL SI +V+ L L+S   +++ G 
Sbjct: 66  GIDKDDLPLALSRHATSKIYELDDLEAVATLGFRGEALASISSVARLALVSSTSEDSAGW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  + +   P     GT VEVRDLFF  PAR  FL+SE+ E   + DV++R+A++
Sbjct: 126 QVVAEGRDMETQISPAPHPRGTTVEVRDLFFNTPARRKFLRSEKTEYTHLEDVVKRLALS 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F         Y      +      R++QV G  F+ NAV +  +   + L G+  
Sbjct: 186 RFDVAFNLRHNGRAIYAWRAGDSQLEQERRVAQVCGPAFMENAVFIEMERGSLRLWGWVA 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PTF+R  A+  + ++NGR ++DK +   +R AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 246 QPTFSRSQADLQHFYVNGRAIRDKLVSHAVRQAYQDVLYHGRHPAFVLYLELDPSTVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+   + +FI  S+  A+ K     +       +       AP    P+ 
Sbjct: 306 VHPTKHEVRFRDNRTVHDFIYSSLHHALAKVRPEDTLARKAADLGEDTPGIAPYAVSPRP 365

Query: 359 --------------ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE------ 398
                         A S   +    +       +   +     TY E     E       
Sbjct: 366 LVEGIAAGEFKGQGAMSFAPSTSGGYRPGYTSVSPGTIREQMHTYGELLASAEPVTARAL 425

Query: 399 ---SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                     LG A AQ+   YI+++   GL++VD HAAHER+ +E+M+  +    + +Q
Sbjct: 426 PQTPTEDIPPLGYALAQLKGIYILAENAQGLIVVDMHAAHERITYERMKAAYAHGGLQTQ 485

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PE I + E E     +  +    LG + +R GP  + IR++P IL++    QL+RD
Sbjct: 486 PLLVPESIAVSEKEADCAEQFADIFKTLGFELQRAGPETLLIRQLPVILNRAQAEQLVRD 545

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++I+  T+  +Q  I  ILATMAC+GS+R+ RK+   EMN LLR+ME    S QCNH
Sbjct: 546 VLSDLIEHGTSERIQHHINEILATMACHGSVRANRKLTIPEMNALLRDMEATERSGQCNH 605

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+    L +++KLF R
Sbjct: 606 GRPTWFLQSLDELDKLFMR 624


>gi|254787458|ref|YP_003074887.1| DNA mismatch repair protein [Teredinibacter turnerae T7901]
 gi|237684748|gb|ACR12012.1| DNA mismatch repair protein MutL [Teredinibacter turnerae T7901]
          Length = 613

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 218/609 (35%), Positives = 346/609 (56%), Gaps = 16/609 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS ++ NQIAAGE++ERP+  IKEL+ENSLDA +++++  +  GG    ++ DNG 
Sbjct: 3   KIFTLSPRLANQIAAGEVVERPASVIKELVENSLDAGATQLDVEVEQGGVKLIRVRDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++P+A+ RH TSKI   DD   + T GFRGEAL SI +V+ L L S   +  +G 
Sbjct: 63  GISKEDLPLALSRHATSKIINLDDLEAVVTLGFRGEALASISSVARLRLTSNTGEEESGW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +   G  + +   P     GT VEVRDLFF  PAR  FL++E+ E   + DV++R+A++
Sbjct: 123 CVEAEGRDMEARLAPAGHPQGTSVEVRDLFFNTPARRKFLRTERTEYGRVEDVLKRLALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
                F+        +     +T      R++Q+ G  F+ NAV ++     + L G+  
Sbjct: 183 RFAQGFSLKNNGRVVHSWRPATTQPEQERRVAQICGPAFMENAVHVDIDRAGLRLWGWVA 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  + ++NGR ++DK +   IR AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 243 LPTFSRSQADLQHFYVNGRAIRDKLVSHAIRQAYQDVLYHGRHPAFVLYLELDPGNVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VHP K  +RFR+  ++ +F+ +S+ KA+   + G   S+       +    + + + + P
Sbjct: 303 VHPTKHEVRFRDSRLVHDFLFRSLHKALADVRPGNEPSAQEDIGAEADTASELSAQQYSP 362

Query: 357 KYATSLT---NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY--------Q 405
                L+      E   + E   S +    S     S+       +              
Sbjct: 363 TEQPGLSFSAQRSEPSAVAERAPSWSPTYTSAGSATSKRPSMGSPASVMPPASDNETVPP 422

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           LG A AQ+   YI+++  DG+V+VD HAAHER+ +E+M++   + KI SQ LL P+ + +
Sbjct: 423 LGYAVAQLKGIYILAENADGMVVVDMHAAHERITYERMKEQQQAQKIQSQPLLVPQAMAV 482

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            E E     E  +    LG + ER GP ++ IR++P IL++ N+ QL+RD++ ++I+  +
Sbjct: 483 SEKEADYADEFADIFVNLGFELERAGPESLLIRQLPVILNRANVEQLVRDVLSDLIEYGS 542

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           +  +Q  I  IL TMAC+GS+R+ R++   EMN LLR+ME    S QCNHGRPT+ ++ L
Sbjct: 543 SQRIQQNINEILGTMACHGSVRANRRLNIAEMNALLRDMEATERSGQCNHGRPTWTQMSL 602

Query: 586 SDIEKLFGR 594
           ++++KLF R
Sbjct: 603 AELDKLFMR 611


>gi|23015547|ref|ZP_00055320.1| COG0323: DNA mismatch repair enzyme (predicted ATPase)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 600

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 250/601 (41%), Positives = 372/601 (61%), Gaps = 9/601 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   ++NQIAAGE++ERP+ A+KEL+EN++DA ++R++ V+A GG+S   ++D+G
Sbjct: 1   MSIRLLPPTLVNQIAAGEVVERPASAVKELVENAIDAGATRIDVVLAEGGQSLIAVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM  +E+ +AV+RH TSK+ DD    I+  GFRGEALPSIG+V+ LTL SRP    +  
Sbjct: 61  CGMAPDEMMLAVERHATSKLPDDDLVRINFLGFRGEALPSIGSVARLTLTSRPRGAESAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G       P A   GT +EVRDLF+  PARL FLK+ + E     DVI R+ +A+
Sbjct: 121 SLSVEGGVKGRPVPAAHPFGTRIEVRDLFYATPARLKFLKAARTELAHACDVIERLGMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPE--RISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P ++F+ S        +  +          RI+QV+G +F  NA+ L+   + + L G+ 
Sbjct: 181 PGIAFSLSDGGRKVLDLAAKRGEPEAARLARIAQVVGREFEPNALALDALRDGVRLTGWA 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT+NR  +   Y+++NGR V+D+ ++  +R AY + +   R+PVV L L+++P QVDV
Sbjct: 241 GLPTYNRATSAAQYLYVNGRPVKDRLVIGAVRGAYQDVLARDRHPVVALFLDLEPDQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT---- 353
           NVHPAK+ +RFR+  ++R  I+ +I+ A+   G   SS L+   + +    + P +    
Sbjct: 301 NVHPAKAEVRFRDSGLVRGLIVGAIRHALAGAGHRASSTLTGVALGALGSPSQPPSSFFG 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           H P    SL   +  +  Q         L  D P  +   +   E   T Y LG A AQ+
Sbjct: 361 HHPPPRPSLPLVRAAIEAQSPFGLAEQSLSLDLPPAAPVTET--EEFTTDYPLGAAKAQL 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H  YI+++T DGLVIVDQHAAHERL+FE+++      ++  Q LL PE++DL E   A +
Sbjct: 419 HDTYIVAETKDGLVIVDQHAAHERLVFERLKLGLEDGRVARQGLLLPEVVDLGEAGAARV 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            E   DL RLG+  E FGP A+ +RE+PA+L + ++  L+RD+ DE+ +   +  L++R+
Sbjct: 479 AERAPDLARLGLVVEPFGPGAVVVREVPALLGEGDVQGLVRDLADELAEWGASTALEERL 538

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            ++ ATMAC+GS+R+GR++   EMN LLR ME  P S QCNHGRPT I L L+DIEKLFG
Sbjct: 539 LHVCATMACHGSVRAGRRLGIPEMNALLRRMEATPLSGQCNHGRPTHISLSLADIEKLFG 598

Query: 594 R 594
           R
Sbjct: 599 R 599


>gi|120555682|ref|YP_960033.1| DNA mismatch repair protein [Marinobacter aquaeolei VT8]
 gi|120325531|gb|ABM19846.1| DNA mismatch repair protein MutL [Marinobacter aquaeolei VT8]
          Length = 629

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 220/629 (34%), Positives = 352/629 (55%), Gaps = 37/629 (5%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ LS ++ NQIAAGE++ERP+  +KEL+EN+LDA +SRV+  I  GG    ++ D+
Sbjct: 1   MPHIQLLSPRLANQIAAGEVVERPASVVKELVENALDAGASRVDVEIEQGGAKLIRVRDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+A+ RH TSKI   DD   + + GFRGEAL SI +VS LTL SR      
Sbjct: 61  GSGIEEADLPLALSRHATSKILTLDDLEAVASLGFRGEALASISSVSRLTLTSRTELQEA 120

Query: 118 GAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            A++ + G  +   + P A   GT VEVRDLFF  PAR  FL++E+ E N + + +RR A
Sbjct: 121 AARVEVEGRDMDARISPAAHPVGTTVEVRDLFFNTPARRKFLRTEKTEFNHVEECVRRQA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +      FT    +     +    T+ +   RI  + G+ FI+NAV ++ ++  + L G+
Sbjct: 181 LGRFDTGFTLRHNQRVVQSLRPAETDLDKERRIGSLCGQQFIDNAVVIDAEATGLRLWGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PTF+R  A+  Y F+NGR ++DK +   +R AY + +   R+P  VL LE+DP  VD
Sbjct: 241 VALPTFSRSQADLQYFFVNGRVIRDKLVAHAVRQAYRDVLYNNRHPAFVLYLEVDPATVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHP K  +RFR+  ++ +FI +++ +A+    +     L      SF ++        
Sbjct: 301 VNVHPTKHEVRFRDGRLVHDFIFRTLHRALA--DVRPDDHLRGAAAQSFGRESAVVEPEH 358

Query: 349 -------------NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS----------D 385
                           ++    Y +S   + ++ +   ++++    L             
Sbjct: 359 SAGGFSAPGTSGPWPTQSRTEAYPSSPGQSPQQEWRASDQMAFYQSLNEGGGVSTPVARA 418

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +   +  +      +A    LG A AQ+H  YI++Q+  GL++VD HAAHER+ +E+M++
Sbjct: 419 EMPAASASVTPPRDDAEEPPLGYAIAQLHGIYILAQSRAGLIVVDMHAAHERITYERMKR 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                 + SQ LL P  + + + E AL   H E+L +LG++ ER GP  +A+R+IPA+L 
Sbjct: 479 ALVEQDLKSQPLLVPLSLAVSQKEAALAESHGEELQQLGLQIERIGPETLAVRQIPALLR 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             +  QL+RD++ ++I+   +  ++     +L TMAC+GS+R+ R++   EMN LLR+ME
Sbjct: 539 GADTEQLVRDVLADLIEHGQSDRVEAVTHELLGTMACHGSVRANRQLTIPEMNSLLRDME 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               S QCNHGRPT+  + LS+++KLF R
Sbjct: 599 ATERSGQCNHGRPTWTLVTLSELDKLFLR 627


>gi|331005105|ref|ZP_08328508.1| DNA mismatch repair protein MutL [gamma proteobacterium IMCC1989]
 gi|330421074|gb|EGG95337.1| DNA mismatch repair protein MutL [gamma proteobacterium IMCC1989]
          Length = 619

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 215/617 (34%), Positives = 341/617 (55%), Gaps = 26/617 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L  ++ NQIAAGE++ERP+  IKE++ENSLDA +SR++  I  GG    +I DNG 
Sbjct: 3   KIKLLPPRLANQIAAGEVVERPASVIKEMLENSLDAGASRIDIDIENGGIKTMRIRDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKI   DD   + T GFRGEAL S+ +VS LTL S    +  G 
Sbjct: 63  GIDQDDLALALSRHATSKIYVLDDLEAVGTLGFRGEALASVSSVSRLTLTSSVNDSAQGW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                G+++S+   P     GT VEVRDLFF  PAR  FL++E+ E N I +V++R+A+A
Sbjct: 123 AAKAEGQEMSTELTPAPHQQGTTVEVRDLFFNTPARRKFLRTEKTEFNRIEEVVKRLALA 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F     +   + +   ++      R++Q+ G  F+ NA+ ++ + + + L G+  
Sbjct: 183 NFDVTFELRHNQRTIHSLRAGTSEAEKNRRVAQICGPAFMENALTVDIERSGLRLWGWVA 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  + ++NGR ++D+ +   ++ AY++ +  GR+P  VL LEIDP  VDVN
Sbjct: 243 LPTFSRSQADLQHFYVNGRAIKDRLVSHAVKQAYSDVLYHGRHPAFVLYLEIDPATVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI---------------------STSSVL 337
           VHP K  +RFR+   + +FI  S+  A+                             +++
Sbjct: 303 VHPTKHEVRFRDGRNVHSFIYSSLHHALADVRPDDQLTTASSLAVAAGIGTDASQQQTIV 362

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            ++ +S            P  A S             ++   + L       S   +   
Sbjct: 363 DQQSMSLAASTLVNTAGNPSPAYSSAPHYPPTDTDTPQI--REALNFYGQAASLSPESAT 420

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E+      LG A AQ+   YI+S+   GL++VD HAAHER+++E+M+  F+   + +Q L
Sbjct: 421 ETSHEVPPLGYAIAQLKGIYILSENAQGLIVVDMHAAHERVVYERMKSAFDQGNVQAQPL 480

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P+ + + E E A I  H E   +LG   E  GP ++ IR+IP  L   N+ QL+RD++
Sbjct: 481 LVPQTLAVSEKEVACIESHQEVFQQLGFVVETAGPESLLIRQIPVSLKNANVEQLVRDVL 540

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            ++I   ++  ++  I  +L+TMAC+GS+R+ R +   EMN LLR+ME    S QCNHGR
Sbjct: 541 SDLIQYGSSDRIKQHINELLSTMACHGSVRANRTLSVPEMNALLRDMEATERSGQCNHGR 600

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT++   L++I+K F R
Sbjct: 601 PTWMHFSLAEIDKWFMR 617


>gi|119474825|ref|ZP_01615178.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143]
 gi|119451028|gb|EAW32261.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2143]
          Length = 617

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 214/613 (34%), Positives = 341/613 (55%), Gaps = 20/613 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS ++ NQIAAGE++ERP+  IKEL+ENS+DA +SR++  I  GG    ++ DNG 
Sbjct: 3   QIKRLSPRLANQIAAGEVVERPASVIKELVENSMDAGASRIDIDIEAGGVKLMRVRDNGV 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A+ RH TSKI   DD  N+ T GFRGEAL SI +VS LT+MS   +   G 
Sbjct: 63  GIEQEDMPLALSRHATSKIIELDDLENVRTLGFRGEALASISSVSRLTIMSNTEEQGAGW 122

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +    G  +   V P     GT VEVRDLFF  PAR  FL++E+ E N + +V++R +++
Sbjct: 123 KAQTEGRDMGVEVSPTPHLRGTSVEVRDLFFNTPARRKFLRTEKTEFNHLEEVVKRQSLS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F  +      + +   ++      R++ V G  F+ NA+ ++ ++  + L G+  
Sbjct: 183 RFDVGFYLNHNGRAIHALKPCASQLERERRVASVCGPAFMQNALHIDTEAAGLKLWGWVA 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  ++  + F+NGR ++DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 243 LPTFSRSQSDLQHFFVNGRVIRDKLVTHAVRQAYRDVLFHGRHPAFVLYLEVNPSIVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------KGISTSSVLSKKMISSFHQDNA 350
           VHP K  +RFR+   + +F+ +S+ + + +             S+   +  I++      
Sbjct: 303 VHPTKHEVRFRDGRTVHDFLFRSLHRLLAEVRPEDQLAPASINSAEGQQGGIAAGEFQQQ 362

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS---------EDNDPVEESEA 401
                    T     Q     +E     + L    +   S                + + 
Sbjct: 363 QTIAWRADTTPQRPGQSPASFREQAAGYSALYGRGENVGSHGRSAGALGSGATMAPQEDG 422

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
               LG A AQ+   YI+++   GLV+VD HAAHER+ +E+M+       I SQ LL PE
Sbjct: 423 EVPPLGYAIAQLKGIYILAEGEHGLVLVDMHAAHERITYERMKTARQGVGIQSQPLLVPE 482

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
            + + + E     E       LG+  ER GP ++ +REIP IL   N+ QL+RD++ ++I
Sbjct: 483 SMAVSQREADCAEESSNVFRDLGVGIERAGPESLVVREIPVILQDSNVEQLVRDVLSDLI 542

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           +  ++  ++  I+ IL+TMAC+GS+R+ R++   EMN LLR+ME+   S QCNHGRPT+ 
Sbjct: 543 EHGSSDRIEAHIDEILSTMACHGSVRANRRLTIPEMNALLRDMEETERSGQCNHGRPTWT 602

Query: 582 KLKLSDIEKLFGR 594
           +L L ++++LF R
Sbjct: 603 QLSLDELDRLFMR 615


>gi|330501621|ref|YP_004378490.1| DNA mismatch repair protein [Pseudomonas mendocina NK-01]
 gi|328915907|gb|AEB56738.1| DNA mismatch repair protein [Pseudomonas mendocina NK-01]
          Length = 623

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 209/619 (33%), Positives = 337/619 (54%), Gaps = 26/619 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 3   RIHLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDVEVEQGGVKLLKVRDDGG 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ + ++P+A+ RH TSKI +  D   + + GFRGEAL SI +VS LTL SR    +   
Sbjct: 63  GIAAGDLPLALARHATSKIRELEDLEAVLSMGFRGEALASISSVSRLTLTSRTADADQAW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 123 QVETEGRDMEPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRAEKTEFDHLQEVIKRLALA 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F         + ++  +   +   R++ V G  F+  A+ +  +   + L G+ G
Sbjct: 183 RFDVGFHLRHNGKTVFSLHEAADEISRARRVASVCGPAFLEQALPIEIERGGLRLWGWVG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL LEIDP  VDVN
Sbjct: 243 LPTFSRSQADLQYFYVNGRMVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLEIDPATVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ----------- 347
           VHP K  +RFR+  ++ +F+  ++ +A+              +                 
Sbjct: 303 VHPTKHEVRFRDSRMVHDFLYGTLHRALADVRPEDQVAAPAAVSPMLRPTGLAAGEFGPQ 362

Query: 348 ----------DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--SEDNDP 395
                     +       P +  +    Q+ +       +       +  +   +     
Sbjct: 363 GEMGLAASVLETPVAIPQPAWRGAGAGYQQPVGNPGVPAAEAQAAYREYFSPLPTAQAQS 422

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
           V + +     LG A AQ+   YI+++   G+V+VD HAAHER+ +E+++Q   S  +  Q
Sbjct: 423 VPQEQGDIPPLGYAVAQLKGVYILAENAQGMVVVDMHAAHERITYERLKQAMASEGLRGQ 482

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PE I L + E     EH E   RLG + +R G  ++AIR+IPA+L +    QL+RD
Sbjct: 483 PLLVPESIALSQREADCAEEHGEWFQRLGFELQRLGEESVAIRQIPALLKQAEATQLVRD 542

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++++  T+  +Q  +  +LATMAC+G++R+ R++   EMN LLR+ME+   S QCNH
Sbjct: 543 VLADLLEYGTSDRIQAHLNELLATMACHGAVRANRRLTIPEMNGLLRDMEQTERSGQCNH 602

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ +L +  ++KLF R
Sbjct: 603 GRPTWTQLSMDQLDKLFMR 621


>gi|154250749|ref|YP_001411573.1| DNA mismatch repair protein [Parvibaculum lavamentivorans DS-1]
 gi|154154699|gb|ABS61916.1| DNA mismatch repair protein MutL [Parvibaculum lavamentivorans
           DS-1]
          Length = 602

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/601 (40%), Positives = 392/601 (65%), Gaps = 10/601 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+LSE  IN+IAAGE++ERP+ A+KEL+EN+LDA +  ++ VI GGG+   ++TD+G 
Sbjct: 3   RIRRLSEGTINRIAAGEVVERPASAVKELVENALDAGARHIDIVIDGGGRDLIRVTDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS------DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           GM +EE+ +AV+RH TSK+       +D  +I T GFRGEALPSIGAV+ L+++SR    
Sbjct: 63  GMNAEELALAVERHATSKLRIDAGGQEDLHDIATLGFRGEALPSIGAVARLSIVSRTRDA 122

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
           ++  +I++ G +++ V P +   GT +EVRDLF+  PARL F+KSE+ ET  ++DV++R+
Sbjct: 123 DSAERISVEGGRVTDVEPASGRAGTQIEVRDLFYATPARLKFMKSERAETLAVSDVVKRL 182

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           A+A+P+V FT ++ + N  ++  +   +     R+  ++G DF  NA+ ++    EI L 
Sbjct: 183 AMAHPEVGFTLTSAERNLLRLEPELPGDAGRLMRLGAIMGRDFAENAIAIDAMREEIGLA 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+ G+PT+NRG A   Y+F+NGR V+DK ++  +R AYA+ +   R+P V L + IDPR 
Sbjct: 243 GFAGLPTYNRGTAQMQYLFVNGRPVRDKLLVGAVRGAYADFLARDRHPAVALFVTIDPRD 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAK+ +RFR+  ++R  I+ ++++A+ + G   S+ ++   + +   + A  + 
Sbjct: 303 VDVNVHPAKAEVRFRDAGLVRGLIVGALKRALAEAGHRASTTVAGATLDALRPEMAAAS- 361

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE-ATHYQLGIACAQI 413
            P Y  +        F +E              +   +  P   +E A  + LG+A  Q+
Sbjct: 362 -PAYTGTWRPEPRPGFAEERGAWQGAFAGLAAQSARVEPLPESGAETAAGFALGVARGQL 420

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+ Y+I+QT DG+VIVDQHAAHERL++E+M++   +  ++ Q LL PE+++L E E   +
Sbjct: 421 HETYVIAQTADGIVIVDQHAAHERLVYERMKKAMAAQGVSRQMLLIPEVVELDEAEAERL 480

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
                +L  LG   E FG  A+ +RE+P+I  K ++  L+RD+ D++ +     +L++++
Sbjct: 481 AARVGELAELGFVLEAFGTGAVVVREVPSIFGKLDVQALVRDLADDLTELDEALSLKEKL 540

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E +  T+AC+GS+R+GR++ + EMN LLREME  P+S QCNHGRPT+++LKLSDIE+LFG
Sbjct: 541 EEVCGTIACHGSVRAGRRLTAEEMNALLREMEATPHSGQCNHGRPTYVELKLSDIERLFG 600

Query: 594 R 594
           R
Sbjct: 601 R 601


>gi|89094654|ref|ZP_01167591.1| DNA mismatch repair protein [Oceanospirillum sp. MED92]
 gi|89081124|gb|EAR60359.1| DNA mismatch repair protein [Oceanospirillum sp. MED92]
          Length = 627

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 214/623 (34%), Positives = 349/623 (56%), Gaps = 30/623 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKE++ENSLDA +++V+  +  GG    +I DNGF
Sbjct: 3   RIHLLSPRLANQIAAGEVVERPASVIKEILENSLDAGANKVDVDVEQGGVKLMRIRDNGF 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI+  +D   + + GFRGEAL SI +VS LTL SR    +   
Sbjct: 63  GIEKDDLPLALSRHATSKITLLEDLEAVGSLGFRGEALASISSVSRLTLTSRQADQDNAW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  + +   P A   GT VEV+DLFF  PAR  FLK+E+ E   + +V++R+A++
Sbjct: 123 QVQTEGRDMEAQLEPAAHPTGTTVEVKDLFFNTPARRKFLKTEKTEFRHLDEVVKRLALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGY 236
              V+F         ++++   +      R++ + G  FI+NAV+ +   +++ + L G+
Sbjct: 183 RFDVAFQLRHNGKVIHQLHQADSELEQERRVASICGSAFIDNAVKADVIAEASGLRLWGW 242

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G+PTF+R  A+  Y F+NGR ++DK +   +R AYA+ +  GR+P  VL LE+DP  VD
Sbjct: 243 VGLPTFSRSQADLQYFFVNGRMIRDKVVTHAVRQAYADVLYHGRHPAYVLYLELDPALVD 302

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  +RFR   ++ +F+ +++ + I            ++  +S +     +    
Sbjct: 303 VNVHPTKHEVRFRESRLVHDFLFRTLHRLIADMRPQDQMASPEQAEASVNLQPQVQPVQQ 362

Query: 357 KYATSLTNTQEKLFLQEN-------------------------RLSTNDLLPSDDPTYSE 391
            Y  +         +  N                         ++S    L       S 
Sbjct: 363 NYEQNRIAFSSAQNVSGNAGFNSSVRGGGYTPPSAPSGGQIREQISGYAALHPQSDVQSV 422

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            ++  E+   T   +G A AQ+H  YI+++   GLV+VD HAAHER+++E+M+Q +    
Sbjct: 423 SDNTAEQGSETCPPMGYAIAQLHGVYILAENEQGLVVVDMHAAHERIVYERMKQSYEQDV 482

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + SQ LL P  + +   E     E  E   RLG +  R G   + +R++P  L+K N+ Q
Sbjct: 483 VRSQPLLVPLSLAVSAREADCAEEQAETFKRLGFELARMGEETLVVRQVPVSLAKGNVEQ 542

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L+RD++ +++    +  ++  I  +LATMAC+G++R+ R++   EMN LLR+ME+   S 
Sbjct: 543 LIRDVLSDMLVYGESKRVEQHINELLATMACHGAVRANRQLTIPEMNALLRDMEQTERSG 602

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+ ++ +SD++KLF R
Sbjct: 603 QCNHGRPTWSQMSMSDLDKLFMR 625


>gi|319787568|ref|YP_004147043.1| DNA mismatch repair protein MutL [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466080|gb|ADV27812.1| DNA mismatch repair protein MutL [Pseudoxanthomonas suwonensis
           11-1]
          Length = 617

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 214/617 (34%), Positives = 346/617 (56%), Gaps = 25/617 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L + +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I D+G
Sbjct: 1   MPIRPLPDTLINQIAAGEVVERPASVVKELVENALDAGATRVDIDLEEGGIRLIRIRDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+P+A+ RH TSKI+  DD   + T GFRGEALPSI +VS   L SRP     G
Sbjct: 61  GGIPPEELPLAISRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFMLASRPRDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + + G ++  + P A  PGT VEVR+LF+ +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 AALHVDGGRVGEIVPKAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +      + +   R+ + +GEDF  +A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYRA--GDLDAAARLGETLGEDFARSALRIDHSGAGLRLHGWIA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R +A+Q Y+++NGR V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASADQQYLYVNGRAVRDRSVAHAVKLAYQDVLYHGRQPAYVLFLELDPTRVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------KGISTSSVL 337
           VHPAK  +RFR+  +I +F+ +++Q+A+ +                        S S+  
Sbjct: 299 VHPAKHEVRFRDARLIHDFVFRTLQEALAQTRAGVETGVAASAMPGQAPMGWQPSASAAP 358

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           S     +  +   P T  P+      +     +        N    S  P     +  + 
Sbjct: 359 SPLDNGAGARPFVPWTPAPQPLGLRVDEAAGAYAALYGEPGNSSGASAMPVLPRQDMALP 418

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E++     LG A AQ+H  YI+++  +GLV+VD HAAHER+ +E+++   +   + +Q L
Sbjct: 419 EAQGEVPPLGYAIAQLHGIYILAENAEGLVVVDMHAAHERIGYERLKTAHDGIGLRAQPL 478

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P  + + E +  +     E L +LG +  R GP  +A+R +PA+L+  +   LLRD++
Sbjct: 479 LVPLSLAVGERDADVAERESETLVQLGFEVTRSGPQTLAVRSVPALLAHADPEALLRDVL 538

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            ++ +   T  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    S QCNHGR
Sbjct: 539 ADLREHGATRRVAAARDELLSTMACHGAVRANRRLTIPEMNALLRDMEATERSGQCNHGR 598

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT+ +  L +I++ F R
Sbjct: 599 PTWARFSLGEIDRWFLR 615


>gi|254281638|ref|ZP_04956606.1| DNA mismatch repair protein MutL [gamma proteobacterium NOR51-B]
 gi|219677841|gb|EED34190.1| DNA mismatch repair protein MutL [gamma proteobacterium NOR51-B]
          Length = 605

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 213/601 (35%), Positives = 342/601 (56%), Gaps = 8/601 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L  +I NQIAAGE+++RP+  +KE +ENSLDA + R++  I  GG    ++ D+G 
Sbjct: 3   RIRSLDPRIANQIAAGEVVDRPASVVKEALENSLDAGARRIDIDIEAGGSQLIRVRDDGL 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+  +++ +A++RH TSKIS  +D   + T GFRGEAL SI +VS +TL S    + + G
Sbjct: 63  GIGRDDLTLALERHATSKISTIEDLEAVATLGFRGEALASIASVSRMTLTSNASDSVSDG 122

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +S   RP     GT +EVRDLF+  PAR  FL++E+ E   I +V+RR A+
Sbjct: 123 CCAVAEGRDMSVTLRPAPHPRGTSLEVRDLFYNTPARRKFLRTEKTEFGHIDEVVRRQAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT          +     +G    R+S V GE F+   V +  ++  + LQG+ 
Sbjct: 183 SRSDVSFTLRHNNKVVRSLPAADDDGLLLRRLSGVCGEAFMAQCVSIEREAGALMLQGWV 242

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R  A+  Y F+NGR ++DK +   I+ AY + +  GR+P  VL L + P +VDV
Sbjct: 243 GLPTFSRSQADLQYFFVNGRVIRDKLVSHAIKQAYRDVLFHGRHPAYVLFLSLPPARVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-SSFHQDNAPKTHLP 356
           NVHP K  +RFR+   + +F+  ++ +A+       S+      I ++     AP+    
Sbjct: 303 NVHPTKHEVRFRDGREVHSFLFSTLHRALADIRPGESAPSVAPDIVAALSSGAAPQQAAM 362

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLGIACAQI 413
              T      E +  Q++ LS     P            + E    E     LG A AQ+
Sbjct: 363 HIPTPAAVDPELVAAQQSALSALYARPMPAADRGALPSSIAEPDSGEEEVPPLGFALAQL 422

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
              YI+++   G+V+VD HAAHER+ +E+++Q    + I  Q LL P+ + +   E  ++
Sbjct: 423 SGVYILAENAHGMVLVDMHAAHERITYERLKQRSADSGIRRQPLLVPQTLAVSPREARMV 482

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            EH   L  +G+  +  G   + +RE+PA+L+  N+ QL+RD++ ++++  ++  ++   
Sbjct: 483 AEHQALLLEMGLVIDGVGEEQVVLRELPAVLAGSNVDQLVRDVLSDLVEYGSSERIRGHF 542

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           +++L+TMAC+GSIR+ R++   EMN LLR+ME    S QCNHGRPT+++L L++++KLF 
Sbjct: 543 DDVLSTMACHGSIRANRRLTITEMNALLRDMEHTERSGQCNHGRPTWVQLTLAELDKLFL 602

Query: 594 R 594
           R
Sbjct: 603 R 603


>gi|254448141|ref|ZP_05061604.1| 2-polyprenylphenol 6-hydroxylase [gamma proteobacterium HTCC5015]
 gi|198262267|gb|EDY86549.1| 2-polyprenylphenol 6-hydroxylase [gamma proteobacterium HTCC5015]
          Length = 615

 Score =  571 bits (1473), Expect = e-161,   Method: Composition-based stats.
 Identities = 204/614 (33%), Positives = 344/614 (56%), Gaps = 21/614 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I++L  K+INQIAAGE+IERP+  +KEL+ENS+DA ++ V   +  GG    +I DNG
Sbjct: 1   MRIQRLPNKLINQIAAGEVIERPASVVKELLENSIDAGATEVHIDLEQGGLKRIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  EEIPMA++RH TSKI   +D  ++ + GFRGEALPS+ +VSHLT+ S       G
Sbjct: 61  CGMNREEIPMALERHATSKIGSLEDLESVRSMGFRGEALPSMASVSHLTVTSCAEGEEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             ++    +  +++P A + GT +E+RDLFF +PAR  F+++E+ E      +++R+A+ 
Sbjct: 121 WCVSPET-EGGAMKPAAHSQGTTIELRDLFFNVPARRKFMRTERTEYKHTETLVKRIALG 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P +  T         ++          +R++++ G  F+   + +  ++  + LQG+ G
Sbjct: 180 APYLGLTLRHNGKVTCQLRPAGNRAEMEKRVAELCGSAFMEQCLYVEHEAAGLKLQGWVG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   ++  Y + +  GR+P  VL LE+DP+ VDVN
Sbjct: 240 LPTFSRSQADLQYFYVNGRIVRDKLVTHAVKQGYQDVLYHGRHPAYVLHLELDPKLVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN-------KKGISTSSVLSKKMISSFH---QD 348
            HP K  +RFR+  ++ +F+ +++ + +        + G +    + +    +       
Sbjct: 300 AHPTKYEVRFRDGQLVHSFLFRTLHQVLADTRAGSYEGGAAQRDDIHRAGQGAEQGGLDA 359

Query: 349 NAPKTHLPKYATSLTNTQE--------KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            + +  +P   +                   +   +  + + P    T S  N  V    
Sbjct: 360 FSTQAAMPLRVSDGEMASNAGLGAGAIPSDSRNGSVGGSVIPPEYYRTASSPNPDVVAET 419

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              + LG A AQ+H  Y+++Q   GL+IVD HAAHER+ +EK++  +    I +Q LL P
Sbjct: 420 EQQHPLGYALAQLHGLYVLAQNQSGLIIVDTHAAHERVTYEKLKAAYEQQGIQTQPLLVP 479

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             I++ E E  +  EH  +  +LG +  R  P A+ IR++P +L++ +   L+RD++ ++
Sbjct: 480 VSINVSEAEADMAEEHAAEFLKLGFELSRSAPEALRIRQVPVLLNQADAEALVRDVLSDL 539

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                +  +++ +  +L+TMAC+GS+R+ R +   EMN LLREME    S QCNHGRPT+
Sbjct: 540 TAHGHSERIREALNEVLSTMACHGSVRANRLLTLPEMNALLREMEATERSGQCNHGRPTW 599

Query: 581 IKLKLSDIEKLFGR 594
            +L +  ++KLF R
Sbjct: 600 TQLTVDQLDKLFMR 613


>gi|83313515|ref|YP_423779.1| DNA mismatch repair protein [Magnetospirillum magneticum AMB-1]
 gi|123767885|sp|Q2VYV5|MUTL_MAGMM RecName: Full=DNA mismatch repair protein mutL
 gi|82948356|dbj|BAE53220.1| DNA mismatch repair enzyme [Magnetospirillum magneticum AMB-1]
          Length = 607

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 253/608 (41%), Positives = 371/608 (61%), Gaps = 16/608 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   ++NQIAAGE++ERP+ A+KEL+EN++DA +SR++ V+A GG+S   ++D+G
Sbjct: 1   MSIRLLPPTLVNQIAAGEVVERPASAVKELVENAIDAGASRIDVVLAEGGQSLIAVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM+ +E+ +AV+RH TSK+ DD    I   GFRGEALPSIG+V+ LTL SRP   ++  
Sbjct: 61  CGMSPDEMMLAVERHATSKLPDDDLVRIRFLGFRGEALPSIGSVARLTLTSRPRGADSAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G       P A   GT +EVRDLF+  PARL FLK+ + E     DVI R+ +A+
Sbjct: 121 SLSVEGGAKGRPVPAAHPQGTRIEVRDLFYATPARLKFLKAARTELTHAADVIERLGMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P ++F+ S        +  +          RI+QV+G +F  NA+ L+ + + + L G+ 
Sbjct: 181 PDIAFSLSDGGRKVLDLAAKRGEPGAALLSRIAQVVGREFEPNALALDAERDGVRLTGWA 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT+NR  +   Y+F+NGR V+D+ ++  +R AY + +   R+PVV L LE+DP QVDV
Sbjct: 241 GLPTYNRATSAAQYLFVNGRPVKDRLVIGAVRGAYQDVLARDRHPVVALFLELDPDQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-----HQDNAPK 352
           NVHPAK+ +RFR+  ++R  I+ +I+ A+   G   SS L+   + +      +      
Sbjct: 301 NVHPAKAEVRFRDSGLVRGLIVGAIRHALAGAGHRASSTLTGVALGALGGGGGNSPPPSF 360

Query: 353 THLPKYATSLT------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
            H P    SL         Q  L L E  L  +    +          P E S    Y L
Sbjct: 361 AHYPPPRPSLPLIRAGIGAQAPLGLAEQGLGLHLPPAAPVAPPEAREGPGEAS--VDYPL 418

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A AQ+H  YI+++T DGLVIVDQHAAHERL+FE+++      ++  Q LL PE++DL 
Sbjct: 419 GAAKAQLHDTYIVAETADGLVIVDQHAAHERLVFERLKLGLTEGQVARQGLLLPEVVDLG 478

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +   A + E   DL RLG+  + FGP A+ +RE+PA+L   ++  L+RD+ DE+ +   +
Sbjct: 479 DAGAARVTERAGDLARLGLVIDSFGPGAVVVREVPALLGDDDVQGLVRDLADELAEWGAS 538

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             L++R+ +I ATMAC+GS+R+GR++   EMN LLR ME  P S QCNHGRPT + L L+
Sbjct: 539 TVLEERLLHICATMACHGSVRAGRRLSVPEMNALLRRMEATPLSGQCNHGRPTHVSLSLN 598

Query: 587 DIEKLFGR 594
           DIEKLFGR
Sbjct: 599 DIEKLFGR 606


>gi|260432213|ref|ZP_05786184.1| DNA mismatch repair protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416041|gb|EEX09300.1| DNA mismatch repair protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 618

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 259/604 (42%), Positives = 390/604 (64%), Gaps = 13/604 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++TD+G G
Sbjct: 15  IRQLDEAAINRIAAGEVVERPASAVKELVENAIDAGATRIAIDIADGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  E++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR P     AQI
Sbjct: 75  IAPEDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAPGAE-AAQI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G K+  V+P A+  GT+VE+RDLF+  PARL F+++++ E   I+D ++R+A+A P 
Sbjct: 134 RVAGGKMEPVKPAALRAGTVVELRDLFYATPARLKFMRTDRAEAQAISDTVKRLAMAEPS 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           ++FT    S     R        NG+  +    R+++++G +F  NA+ ++     I L 
Sbjct: 194 ITFTLRDVSGGGEGRVVFRADRENGDLFDALHARLARILGREFAENALRIDATREGIRLY 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+NGR V+DK +   +R AY + +   R+P   L ++ +P  
Sbjct: 254 GYAALPTYSRGAAVAQFLFVNGRPVRDKMLTGALRAAYFDFLSRDRHPAAALFIDCEPTL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ S++ A+ + G   S+ ++   + +   + AP   
Sbjct: 314 VDVNVHPAKSEVRFRDPGVARGLIVSSLRHALAEAGHRASTTVANATLGAMRPEPAPVAP 373

Query: 355 LPKYATSLTNTQEKLFLQENRLS-TNDLLPSDDPTYSED---NDPVEESEATHYQLGIAC 410
              Y     +   +    + +     DL  +   +  E        +++   H  LG A 
Sbjct: 374 ARVYQMDRPSPAARAMAYQAQAPGFADLANAYSGSVVEPVAEPAQPDQTPPEHLPLGAAR 433

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+H+NYII+QT DG+VIVDQHAAHERL++EK+++      + +Q LL PEI++L EG+C
Sbjct: 434 GQVHENYIIAQTADGMVIVDQHAAHERLVYEKLKKQMAENGVAAQALLIPEIVELSEGDC 493

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A ++   +DL RLG+  E FG  A+A+RE PAIL + N   ++ DI+DE+ D   + T+Q
Sbjct: 494 ARLIAVADDLSRLGLTIEPFGGGAVAVRETPAILGEVNARAMILDILDELADQGESQTVQ 553

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            RIE IL+ +AC+GS+RSGR+M++ EMN LLREME  P+S QCNHGRPT+++LKLSDIE+
Sbjct: 554 ARIEAILSRVACHGSVRSGRRMRAEEMNALLREMEATPHSGQCNHGRPTYVELKLSDIER 613

Query: 591 LFGR 594
           LFGR
Sbjct: 614 LFGR 617


>gi|90022314|ref|YP_528141.1| DNA mismatch repair protein [Saccharophagus degradans 2-40]
 gi|89951914|gb|ABD81929.1| DNA mismatch repair protein MutL [Saccharophagus degradans 2-40]
          Length = 630

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 219/628 (34%), Positives = 348/628 (55%), Gaps = 34/628 (5%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+KLS ++ NQIAAGE++ERP+  IKEL+ENS+DA + +++  I  GG    ++ DN
Sbjct: 1   MPEIKKLSPRLANQIAAGEVVERPASVIKELVENSVDAGAKQLDVEIENGGVKLMRVRDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+A+ RH TSKI   DD   + T GFRGEAL SI +V+ L L S   Q +T
Sbjct: 61  GCGIGKNDLPLALSRHATSKIYHLDDLEAVGTLGFRGEALASISSVARLKLTSNDGQQDT 120

Query: 118 GAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  G  + +   P A   GT VEVRDLFF  PAR  FL++E+ E + I D+++R+A
Sbjct: 121 AWCAQAEGRDMEAELSPAAHPQGTTVEVRDLFFNTPARRKFLRTEKTEYSRIEDILKRIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           ++  ++ F+        +     ++      R++Q+ G  F+ NAV ++     + L G+
Sbjct: 181 LSRFELGFSLKNNGKVVHNWRPANSLAEQERRVAQICGPAFMENAVHVDINRTGLRLWGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PTF+R  A+  + ++NGR ++D+ +   ++ AY + +  GR+P  VL LE+DP  VD
Sbjct: 241 VALPTFSRSQADLQHFYVNGRAIKDRLVAHAVKQAYQDVLYHGRHPAYVLYLELDPANVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHP K  +RFR+  ++ +F+  S+ KA+     S    ++ +  S             
Sbjct: 301 VNVHPTKHEVRFRDGRLVHDFLFSSLHKALADVRPSAEQPVTYQQPSIASLSQQQPVQSA 360

Query: 344 ---------------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                          S+H  +           ++ N  E++    N  S      +   T
Sbjct: 361 LGLAGTSNAASNGAGSYHSSSTANYSTAYSPANVGNVSEQITQYANLTSPTGSPSNLQYT 420

Query: 389 YSEDN--DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
            S     + ++E  A    LG A AQ+   YI+++  +GL++VD HAAHER+ +E+++Q 
Sbjct: 421 NSSQTPVNNLQEDNAEIPPLGYAIAQLKGIYILAENANGLIVVDMHAAHERITYERLKQQ 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
           F+  ++ SQ LL P  + + E E AL  E      RLG   E  GP  I IR++P IL++
Sbjct: 481 FDHEQLASQPLLVPLSMAVSEKEAALAEESASLFARLGFTVETAGPETILIRQVPVILNR 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
             +  L+RD++ ++I+  T+  ++  I  IL+TMAC+GS+R+ RK+   EMN LLR+ME 
Sbjct: 541 ATVEDLVRDVLADVIEYGTSSRIEHNINEILSTMACHGSVRANRKLTIPEMNSLLRDMEA 600

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              S QCNHGRPT+ ++ L+ ++KLF R
Sbjct: 601 TERSGQCNHGRPTWSQMTLAQLDKLFMR 628


>gi|110632802|ref|YP_673010.1| DNA mismatch repair protein [Mesorhizobium sp. BNC1]
 gi|123162815|sp|Q11L80|MUTL_MESSB RecName: Full=DNA mismatch repair protein mutL
 gi|110283786|gb|ABG61845.1| DNA mismatch repair protein MutL [Chelativorans sp. BNC1]
          Length = 620

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 276/619 (44%), Positives = 391/619 (63%), Gaps = 25/619 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L++ IINQIAAGE+IERP+  +KEL+EN+LDA + R+E   AGGG +  ++ D+G
Sbjct: 1   MPIRALADIIINQIAAGEVIERPASVVKELVENALDAGAKRIEVATAGGGLNLIRVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  EE+P+AV RHCTSK++ D  +I T GFRGEALPSIG+V  LTL SR P  + GA+
Sbjct: 61  GGIPPEELPLAVARHCTSKLTSDIHDIRTLGFRGEALPSIGSVGRLTLRSRTPDADGGAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G K S+V+PVA N GT VEVRDLFF  PARL F+KSE+ E   IT+V++R+A+A+P
Sbjct: 121 ITVDGGKASAVKPVAANRGTTVEVRDLFFATPARLKFMKSERAEAAAITEVVKRIALAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            V F  S       ++   S +G+    R+ Q+IG+DF  NA+ ++ +   + L GY  I
Sbjct: 181 AVRFMLSGTDRTSTELPAVSADGDGLLRRLGQIIGKDFAENALPIDAEREGVFLTGYASI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+F RGNA   + ++NGR V+DK I   IR AY + +P  R+ V  L + +DP  VDVNV
Sbjct: 241 PSFTRGNALAQFAYVNGRPVRDKLIAGAIRGAYMDALPRDRHAVTALFISLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HPAK+ +RFR+P ++R  I+ +I++A+   G+  ++  +  M+ +F     P        
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIRQALEGAGVRAATTGAAAMLQAFRVPEGPSRANGAND 360

Query: 353 --------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE------ 398
                   T  P+   S+  +  +        + N    +    +   +    +      
Sbjct: 361 FTGRPFSGTERPRGGWSMELSPSRPLEDAFPPAANGFAEAQQVVFDIGSVVSADARAGTL 420

Query: 399 ---SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
              S+     LG A AQ+H+NYI++QT D LVIVDQHAAHERL++E ++   +S  + SQ
Sbjct: 421 EALSDLVGRPLGAARAQVHENYIVAQTEDSLVIVDQHAAHERLVYEALKDAIHSKPLPSQ 480

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PEI+DL E +   +  H E L RLG   ERFGP AI +RE P++L + +I  L+RD
Sbjct: 481 MLLMPEIVDLPEEDAERLCAHAEFLARLGFGVERFGPGAICVRETPSMLGEVDIAALIRD 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           + DEI D+ T  +L+ RI++I ATMAC+GSIRSGR+++  EMN LLR+ME  P S  CNH
Sbjct: 541 LADEIADNDTANSLKKRIDHIAATMACHGSIRSGRRLKPEEMNALLRQMEATPGSGTCNH 600

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+I+LKL+DIE+LFGR
Sbjct: 601 GRPTYIELKLADIERLFGR 619


>gi|116250684|ref|YP_766522.1| DNA mismatch repair protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|123384931|sp|Q1MKU7|MUTL_RHIL3 RecName: Full=DNA mismatch repair protein mutL
 gi|115255332|emb|CAK06407.1| putative DNA mismatch repair protein [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 600

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 301/601 (50%), Positives = 412/601 (68%), Gaps = 9/601 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   +GGGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATSGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +AV+RHCTSKIS+   +I T GFRGEALPSIG+V+ L++ SR   +  G +
Sbjct: 61  SGMDAADLELAVRRHCTSKISETLEDIRTLGFRGEALPSIGSVARLSIASRRRDSAGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++G KI+ +RP A NPGTIVEVRDLFF  PARL FLK+E+ E   IT++++RMAIA+P
Sbjct: 121 IAVAGGKIAHLRPAAANPGTIVEVRDLFFATPARLKFLKTEKAEAGAITEIVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S   S+R  + F +T  +   R++QV+G++F +NA+ L+    EI L G+ G+P
Sbjct: 181 AVRFVLS--GSDRTTLEFPATGDDHLGRMAQVLGKEFRDNAIALDAVREEIALTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRYPVAVLSITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++A+ + G   ++  +  M+ SF     P +  P+ A 
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIREALARDGSRAATTGASDMLRSFRPGFPPNSQRPQTAW 358

Query: 361 SLTNTQEKL------FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-GIACAQI 413
           S   +  +       F +  + S + L         + +     +E       G A AQI
Sbjct: 359 SAETSSSRPYQPATGFGERPQASFDGLSMPTARAEPQFSPQPAAAEPNARYPLGAARAQI 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ LL PEI+D+ E +C  +
Sbjct: 419 HANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQVLLIPEIVDIPEEDCDRL 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M+H  +L  LG+  ERFGP AIA+RE PA+L + +   L+R + DEI +  T   L  ++
Sbjct: 479 MQHAAELSELGLAIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEWDTASGLSAKL 538

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNHGRPT+I+LKLSDIE+LFG
Sbjct: 539 EYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIELKLSDIERLFG 598

Query: 594 R 594
           R
Sbjct: 599 R 599


>gi|241203286|ref|YP_002974382.1| DNA mismatch repair protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857176|gb|ACS54843.1| DNA mismatch repair protein MutL [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 600

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 301/601 (50%), Positives = 412/601 (68%), Gaps = 9/601 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   +GGGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATSGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +AV+RHCTSKIS+   +I T GFRGEALPSIG+V+ L++ SR   +  G +
Sbjct: 61  SGMDAADLELAVRRHCTSKISETLEDIRTLGFRGEALPSIGSVARLSIASRRRDSTGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++G KI+ +RP A NPGTIVEVRDLFF  PARL FLK+E+ E   IT++++RMAIA+P
Sbjct: 121 IAVAGGKIAHMRPAAANPGTIVEVRDLFFATPARLKFLKTEKAEAGAITEIVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S   S+R  + F +T  +   R++QV+G++F +NA+ L+    EI L G+ G+P
Sbjct: 181 AVRFVLS--GSDRTTLEFPATGDDHLARMAQVLGKEFRDNAIALDAVREEIALTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRYPVAVLAITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P+++R  I+ +I++A+ + G   ++  +  M+ SF     P    P+ A 
Sbjct: 299 PAKSDVRFRDPSLVRGLIVGAIREALARDGSRAATTGASDMLRSFRPGFQPNNQRPQTAW 358

Query: 361 SLTNTQEKL------FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-GIACAQI 413
           S   +  +       F +  + S + L         + +     +E       G A AQI
Sbjct: 359 SAETSPSQPYQPATGFGERPQASFDGLSMPTARAEPQFSPQPAVAEPNTRYPLGAARAQI 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ LL PEI+D+ E +C  +
Sbjct: 419 HANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQVLLIPEIVDIPEEDCDRL 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M+H  +L  LG+  ERFGP AIA+RE PA+L + +   L+R + DEI +  T   L  ++
Sbjct: 479 MQHAAELSELGLAIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEWDTASGLSAKL 538

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNHGRPT+I+LKLSDIE+LFG
Sbjct: 539 EYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIELKLSDIERLFG 598

Query: 594 R 594
           R
Sbjct: 599 R 599


>gi|149377526|ref|ZP_01895267.1| DNA mismatch repair protein MutL [Marinobacter algicola DG893]
 gi|149358218|gb|EDM46699.1| DNA mismatch repair protein MutL [Marinobacter algicola DG893]
          Length = 636

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 215/634 (33%), Positives = 349/634 (55%), Gaps = 40/634 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR L+ ++ NQIAAGE++ERP+  +KEL+EN+LDA + RV+  +  GG    ++ D+
Sbjct: 1   MPSIRLLTPRLANQIAAGEVVERPASVVKELVENALDAGARRVDIEVEQGGVKLIRVRDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+A+ RH TSKI   +D   + + GFRGEAL SI +VS L L SR  +   
Sbjct: 61  GMGIDETDLPLALSRHATSKIENLEDLEAVASLGFRGEALASISSVSRLALTSRTERQEA 120

Query: 118 GAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            +++ + G  +  S+ P A   GT VEVRDLFF  PAR  FL++E+ E N + + IRR A
Sbjct: 121 ASRVEVEGRDMDASISPAAHPVGTTVEVRDLFFNTPARRKFLRTEKTEFNHVEECIRRQA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           ++     FT    +     +       +   RI  + G+ FI+NAV ++ ++  + L G+
Sbjct: 181 LSRFDTGFTLRHNQRVVQSLRPAENPLDRERRIGSLCGQQFIDNAVVIDAEATGLKLWGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PTF+R  A+  Y F+NGR ++D+ +   +R AY + +   R+P  VL LE+DP  VD
Sbjct: 241 VALPTFSRSQADLQYFFVNGRVIRDRLVAHAVRQAYRDVLYNNRHPAFVLYLEVDPANVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------KGISTSSVLSKKMI 342
           VNVHP K  +RFR+  ++ +FI +++ KA+                 G    +      +
Sbjct: 301 VNVHPTKHEVRFRDGRLVHDFIFRTLHKALADVRPDDHLKGAVAQSHGREAGTATGGFGV 360

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED---------- 392
            +       +     +A S  ++    F    R S ++    D   + +           
Sbjct: 361 QAAMPGVNHQPASEPFADSGGSSPHAGFSGAPRPSQHEWQARDQMAFYQSLNGGGGTGAQ 420

Query: 393 ------------NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                            +  +    LG A AQ+H  YI++Q+  G+++VD HAAHER+ +
Sbjct: 421 PAMADSGDLAVAAPTPPQDSSDEPPLGYAIAQLHGIYILAQSRQGMIVVDMHAAHERITY 480

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E+M++   +  + SQ LL P  + + + E AL   H E+L +LG++ ER GP  +A+R++
Sbjct: 481 ERMKRALEAQDLKSQPLLVPVSLAVSQKEAALAETHSEELLQLGLRVERIGPETLAVRQV 540

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PA+L   +  QL+RD++ ++I++  +  ++  I  +L TMAC+GS+R+ R++   EMN L
Sbjct: 541 PALLRGADTEQLVRDVLSDLIENGESDRVEAVIHELLGTMACHGSVRANRQLTIPEMNTL 600

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LR+ME    S QCNHGRPT+  + LS+++KLF R
Sbjct: 601 LRDMEATERSGQCNHGRPTWTVVTLSELDKLFLR 634


>gi|229588073|ref|YP_002870192.1| DNA mismatch repair protein [Pseudomonas fluorescens SBW25]
 gi|259511148|sp|C3KDW1|MUTL_PSEFS RecName: Full=DNA mismatch repair protein mutL
 gi|229359939|emb|CAY46793.1| DNA mismatch repair protein [Pseudomonas fluorescens SBW25]
          Length = 633

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 213/628 (33%), Positives = 346/628 (55%), Gaps = 37/628 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENS+D+ + R++  +  GG    ++ D+G 
Sbjct: 6   RIELLSPRLANQIAAGEVVERPASVIKELLENSIDSGAKRIDVDVEQGGVKLLRVRDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 66  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKTILSLHEAHDDAARARRVSAICGAGFLEQALPIEIERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPSVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT----- 353
           VHP K  +RFR+  ++ +F+  ++ + +    +     LS  ++++  + + P+      
Sbjct: 306 VHPTKHEVRFRDGRMVHDFLYGTLHRTLG--DVRPDDQLSAPIVTAVVRPSGPEAGEFGP 363

Query: 354 -----------HLPKYATSLT----------------NTQEKLFLQENRLSTNDLLPSDD 386
                        P+   S T                  Q  + + E + +  +      
Sbjct: 364 QGEMSLAANLLQSPQPQPSYTAPGSGSGAGYQYQYTPRPQSAVPVAEAQAAYREFFAPLP 423

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                    + E       LG A AQ+   YI+++   GLV+VD HAAHER+++E+++  
Sbjct: 424 GAEPGAPVALPEGGGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIA 483

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             S  ++ Q LL PE + + + E     EH     +LG + +R GP  +AIR+IPA+L +
Sbjct: 484 MASEGLSGQPLLVPESLAVSQREADCAEEHHSVFQKLGFELQRLGPETLAIRQIPALLKQ 543

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               +L+ D++ ++++  T+  +Q  I  +L TMAC+G+IR+ R++   EMN LLR+ME 
Sbjct: 544 AEANRLVADVLADLMEYGTSDRIQAHINELLGTMACHGAIRANRRLALPEMNGLLRDMEN 603

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              S QCNHGRPT+ ++ L D++KLF R
Sbjct: 604 TERSGQCNHGRPTWTQMGLDDLDKLFLR 631


>gi|220934074|ref|YP_002512973.1| DNA mismatch repair protein MutL [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995384|gb|ACL71986.1| DNA mismatch repair protein MutL [Thioalkalivibrio sp. HL-EbGR7]
          Length = 611

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 204/595 (34%), Positives = 340/595 (57%), Gaps = 7/595 (1%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
             ++INQIAAGE++ERP+  +KEL+ENSLDA + R++  +  GG    +I D+G G+  +
Sbjct: 15  PPQLINQIAAGEVVERPASVVKELLENSLDAGARRIQVDVEQGGVRRIRIRDDGTGIPPD 74

Query: 67  EIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
           E+ +A+ RH TSKI+  +D   + + GFRGEALPSI +VS LTL S  P+ ++G  I   
Sbjct: 75  ELSLALSRHATSKIASLEDLERVASLGFRGEALPSIASVSRLTLTSATPEADSGWTIQGD 134

Query: 125 G-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
           G ++  +  P A   GT V+V+DLFF +PAR  FL++E+ E   + +V+RR+A++   V 
Sbjct: 135 GGDRFEAPMPAAHPQGTTVDVKDLFFNVPARRKFLRAERTEFGHLEEVVRRIALSRFGVG 194

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
           F  +  +    ++   S      +R++ + GE F   AV ++ ++  + L G+ G+PT++
Sbjct: 195 FELTHNQKPGLRLPPASDEAGQLDRVAAICGEAFATQAVRIDHEAAGLRLSGWLGLPTYS 254

Query: 244 RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAK 303
           R  A+  Y ++NGR V+D+ I   +R AY + +  GR+P  VL LE+DP  VDVN HPAK
Sbjct: 255 RSQADLQYFYVNGRMVRDRLISHAVRQAYQDVLFHGRHPAFVLYLELDPALVDVNAHPAK 314

Query: 304 SYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
             +RFR   ++ +F+ +S+ + + +     +   ++            +           
Sbjct: 315 HEVRFRESRLVHDFLFRSLHRVLAELRPGQAVAPARLETPGREPAAESRAGGDWGGAGWR 374

Query: 364 NTQEKLFLQ-ENRLSTNDLLPSDDPTYSEDNDPV---EESEATHYQLGIACAQIHQNYII 419
            +Q  L L+    + T   L +     +    PV   E        LG A AQ+H  YI+
Sbjct: 375 PSQSGLGLRVAEVMETYASLHTPAAPAAMPMSPVMAFERQAEELPPLGYALAQLHGVYIL 434

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  +GLV+VD HAAHER+ +E++++ +    + SQ LL P  +++   E   +    E 
Sbjct: 435 AQNAEGLVLVDMHAAHERITYERLKRGYWGEGLKSQPLLVPATLNVSAREADRVETDAEA 494

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
             R G + ER GP  + +R +P +L++ +   L+RD++ +++    +  +++ +  +LA 
Sbjct: 495 FSRFGFELERIGPEQLRVRAVPTLLARADTETLVRDVLADLLAHGESSRVEETVNELLAG 554

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC+GS+R+ R++   EMN LLR+ME    S QCNHGRPT+++L +  ++KLF R
Sbjct: 555 MACHGSVRANRQLTVPEMNALLRDMEATERSGQCNHGRPTWVQLSMGQLDKLFMR 609


>gi|152988751|ref|YP_001350994.1| DNA mismatch repair protein [Pseudomonas aeruginosa PA7]
 gi|166232101|sp|A6VD59|MUTL_PSEA7 RecName: Full=DNA mismatch repair protein mutL
 gi|150963909|gb|ABR85934.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa PA7]
          Length = 633

 Score =  568 bits (1464), Expect = e-160,   Method: Composition-based stats.
 Identities = 210/628 (33%), Positives = 334/628 (53%), Gaps = 37/628 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLDA + R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDAGARRIDVEVEQGGVKLLRVRDDGR 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LT+ SR        
Sbjct: 66  GIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASISSVARLTMTSRTADAGEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRAEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F         + ++          R+  V G+ F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQALPIEVERNGLHLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 246 LPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGRHPTFVLFFEVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+  ++ +F+  ++ +A+ +  +     L+    +S  +         ++
Sbjct: 306 VHPTKHEVRFRDSRMVHDFLYGTLHRALGE--VRPDDQLAPPGATSLTEPRPTGAAAGEF 363

Query: 359 ATS--------------------------------LTNTQEKLFLQENRLSTNDLLPSDD 386
                                                 T+ +                  
Sbjct: 364 GPQGEMRLAESVLESPAARVGWSGGASSSGASSGYSAYTRPEAPPSLAEAGGAYKAYFAP 423

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
               E    + ES      LG A AQ+   YI+++   GLV+VD HAAHER+ +E+++  
Sbjct: 424 LPAGEAPAALPESAQDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERITYERLKVA 483

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             S  +  Q LL PE I + E E     EH     RLG + +R GP  +AIR+IPA+L +
Sbjct: 484 MASEGLRGQPLLVPESIAVSEREADCAEEHSGWFQRLGFELQRLGPETLAIRQIPALLKQ 543

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               QL+RD+I ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME 
Sbjct: 544 AEATQLVRDVIADLLEYGTSDRIQAHLNELLGTMACHGAVRANRRLTLPEMNALLRDMEI 603

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              S QCNHGRPT+ +L L +++KLF R
Sbjct: 604 TERSGQCNHGRPTWTQLGLDELDKLFLR 631


>gi|107104045|ref|ZP_01367963.1| hypothetical protein PaerPA_01005118 [Pseudomonas aeruginosa PACS2]
 gi|116053095|ref|YP_793414.1| DNA mismatch repair protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313109947|ref|ZP_07795875.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa 39016]
 gi|122256892|sp|Q02F72|MUTL_PSEAB RecName: Full=DNA mismatch repair protein mutL
 gi|115588316|gb|ABJ14331.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882377|gb|EFQ40971.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa 39016]
          Length = 633

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 211/628 (33%), Positives = 335/628 (53%), Gaps = 37/628 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLDA S R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDAGSRRIDVEVEQGGIKLLRVRDDGR 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LT+ SR        
Sbjct: 66  GIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASISSVARLTMTSRTADAGEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRAEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F         + ++          R+  V G+ F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQALPIEVERNGLHLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 246 LPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGRHPTFVLFFEVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+  ++ +F+  ++ +A+ +  +     L+    +S  +         ++
Sbjct: 306 VHPTKHEVRFRDSRMVHDFLYGTLHRALGE--VRPDDQLAPPGATSLTEPRPTGAAAGEF 363

Query: 359 ATS--------------------------------LTNTQEKLFLQENRLSTNDLLPSDD 386
                                                 T+ +                  
Sbjct: 364 GPQGEMRLAESVLESPAARVGWSGGSSASGGSSGYSAYTRPEAPPSLAEAGGAYKAYFAP 423

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
               E    + ES      LG A AQ+   YI+++   GLV+VD HAAHER+ +E+++  
Sbjct: 424 LPAGEAPAALPESAQDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERITYERLKVA 483

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             S  +  Q LL PE I + E E     EH     RLG + +R GP ++AIR+IPA+L +
Sbjct: 484 MASEGLRGQPLLVPESIAVSEREADCAEEHSSWFQRLGFELQRLGPESLAIRQIPALLKQ 543

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               QL+RD+I ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME 
Sbjct: 544 AEATQLVRDVIADLLEYGTSDRIQAHLNELLGTMACHGAVRANRRLTLPEMNALLRDMEI 603

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              S QCNHGRPT+ +L L +++KLF R
Sbjct: 604 TERSGQCNHGRPTWTQLGLDELDKLFLR 631


>gi|15600139|ref|NP_253633.1| DNA mismatch repair protein [Pseudomonas aeruginosa PAO1]
 gi|218894041|ref|YP_002442910.1| DNA mismatch repair protein [Pseudomonas aeruginosa LESB58]
 gi|254238339|ref|ZP_04931662.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa C3719]
 gi|20455148|sp|Q9HUL8|MUTL_PSEAE RecName: Full=DNA mismatch repair protein mutL
 gi|226723040|sp|B7V209|MUTL_PSEA8 RecName: Full=DNA mismatch repair protein mutL
 gi|9951226|gb|AAG08331.1|AE004907_9 DNA mismatch repair protein MutL [Pseudomonas aeruginosa PAO1]
 gi|126170270|gb|EAZ55781.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa C3719]
 gi|218774269|emb|CAW30086.1| DNA mismatch repair protein MutL [Pseudomonas aeruginosa LESB58]
          Length = 633

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 211/628 (33%), Positives = 335/628 (53%), Gaps = 37/628 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLDA S R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDAGSRRIDVEVEQGGIKLLRVRDDGR 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LT+ SR        
Sbjct: 66  GIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASISSVARLTMTSRTADAGEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRAEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F         + ++          R+  V G+ F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQALPIEVERNGLHLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 246 LPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGRHPTFVLFFEVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+  ++ +F+  ++ +A+ +  +     L+    +S  +         ++
Sbjct: 306 VHPTKHEVRFRDSRMVHDFLYGTLHRALGE--VRPDDQLAPPGATSLTEPRPTGAAAGEF 363

Query: 359 ATS--------------------------------LTNTQEKLFLQENRLSTNDLLPSDD 386
                                                 T+ +                  
Sbjct: 364 GPQGEMRLAESVLESPAARVGWSGGSSASGGSSGYSAYTRPEAPPSLAEAGGAYKAYFAP 423

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
               E    + ES      LG A AQ+   YI+++   GLV+VD HAAHER+ +E+++  
Sbjct: 424 LPAGEAPAALPESAQDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERITYERLKVA 483

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             S  +  Q LL PE I + E E     EH     RLG + +R GP ++AIR+IPA+L +
Sbjct: 484 MASEGLRGQPLLVPESIAVSEREADCAEEHSSWFQRLGFELQRLGPESLAIRQIPALLKQ 543

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               QL+RD+I ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME 
Sbjct: 544 AEATQLVRDVIADLLEYGTSDRIQAHLNELLGTMACHGAVRANRRLTLPEMNALLRDMEI 603

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              S QCNHGRPT+ +L L +++KLF R
Sbjct: 604 TERSGQCNHGRPTWTQLGLDELDKLFLR 631


>gi|296391786|ref|ZP_06881261.1| DNA mismatch repair protein [Pseudomonas aeruginosa PAb1]
          Length = 633

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/626 (34%), Positives = 343/626 (54%), Gaps = 33/626 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLDA S R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDAGSRRIDVEVEQGGIKLLRVRDDGR 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LT+ SR        
Sbjct: 66  GIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASISSVARLTMTSRTADAGEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++E+ E + + +VI+R+A+A
Sbjct: 126 QVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRAEKTEFDHLQEVIKRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F         + ++          R+  V G+ F+  A+ +  + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQALPIEVERNGLHLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 246 LPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGRHPTFVLFFEVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI-------STSSVLSKKMISSFHQDNAP 351
           VHP K  +RFR+  ++ +F+  ++ +A+ +            +S+   +   +   +  P
Sbjct: 306 VHPTKHEVRFRDSRMVHDFLYGTLHRALGEVRPDDQLAPPGATSLTEPRPTGAAAGEFGP 365

Query: 352 KTHLPKYATSLTNTQEKL--------------FLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           +  +    + L +   ++              +    R  T   L      Y     P+ 
Sbjct: 366 QGEMRLAESVLESPAARVGWSGGSSASGGSSGYSAYTRPETPPSLAEAGGAYKAYFAPLP 425

Query: 398 ---------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                    ES      LG A AQ+   YI+++   GLV+VD HAAHER+ +E+++    
Sbjct: 426 AGEAPAALPESAQDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERITYERLKVAMA 485

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           S  +  Q LL PE I + E E     EH     RLG + +R GP ++AIR+IPA+L +  
Sbjct: 486 SEGLRGQPLLVPESIAVSEREADCAEEHSSWFQRLGFELQRLGPESLAIRQIPALLKQAE 545

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             QL+RD+I ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME   
Sbjct: 546 ATQLVRDVIADLLEYGTSDRIQAHLNELLGTMACHGAVRANRRLTLPEMNALLRDMEITE 605

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S QCNHGRPT+ +L L +++KLF R
Sbjct: 606 RSGQCNHGRPTWTQLGLDELDKLFLR 631


>gi|182682515|ref|YP_001830675.1| DNA mismatch repair protein [Xylella fastidiosa M23]
 gi|32129762|sp|Q87AC9|MUTL_XYLFT RecName: Full=DNA mismatch repair protein mutL
 gi|238691108|sp|B2I9E6|MUTL_XYLF2 RecName: Full=DNA mismatch repair protein mutL
 gi|182632625|gb|ACB93401.1| DNA mismatch repair protein MutL [Xylella fastidiosa M23]
 gi|307578792|gb|ADN62761.1| DNA mismatch repair protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 619

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 217/619 (35%), Positives = 346/619 (55%), Gaps = 27/619 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN++DA ++RV+  +   G    +I DNG
Sbjct: 1   MPIRQLPEILINQIAAGEVVERPASVVKELVENAIDAGATRVDIELEAAGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM ++E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TLMSR   +  G
Sbjct: 61  HGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLMSRRATDEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + I G  +  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I +  R +A+A
Sbjct: 121 AVLQIEGGTLGEVIPHAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWARSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P +    S       +        +    + +++GEDF + A+ ++     + L G   
Sbjct: 181 HPDLELRLSHNGKLSRRYKPGDWYSDVR--LIEILGEDFAHQALRVDHSGAGLRLHGCIV 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R NA+Q Y+++NGR V+D+ +   ++ AY++ +  GR+P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRLNADQQYLYVNGRPVRDRSVAHAVKQAYSDVLYQGRHPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  +RFR+  +I +F+ +++Q  + +    T  +              P  H   +
Sbjct: 299 VHPAKHEVRFRDARLIHDFVYRTVQGTLAQTRAGTPPLAVGVGDVEGEGARPPGRHAVSF 358

Query: 359 AT----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-- 406
           +           S + +   L      +S  D   +    Y+     V ++         
Sbjct: 359 SGRRGGASHVLGSYSASTAPLMQGVPSVSVADAPAAYAALYAAPPTQVMDAVPQMQTGLP 418

Query: 407 -----------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                      G A AQ+H  YI+++  DGL++VD HAAHER+ +E++++  +   + +Q
Sbjct: 419 LAAGAGDVPLLGYAIAQLHGIYILAECADGLIVVDMHAAHERIGYERLKRAHDGIGLRTQ 478

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  + + E E  +     E L  LG +  R GP ++ +R IPA+LS+     LLRD
Sbjct: 479 PLLVPMTLMVAEREADVAECEAETLANLGFEVTRSGPGSLQVRSIPALLSQAEPEMLLRD 538

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++ +   T  + +  + +LATMAC+G++R+ R++   EMN LLR+ME    S QCNH
Sbjct: 539 VLSDLSEHGHTRRVAEARDTLLATMACHGAVRAHRRLSISEMNALLRDMEATERSGQCNH 598

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ +  L++I++ F R
Sbjct: 599 GRPTWARFSLAEIDRWFLR 617


>gi|28199765|ref|NP_780079.1| DNA mismatch repair protein [Xylella fastidiosa Temecula1]
 gi|28057886|gb|AAO29728.1| DNA mismatch repair protein MutL [Xylella fastidiosa Temecula1]
          Length = 621

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 217/619 (35%), Positives = 346/619 (55%), Gaps = 27/619 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN++DA ++RV+  +   G    +I DNG
Sbjct: 3   MPIRQLPEILINQIAAGEVVERPASVVKELVENAIDAGATRVDIELEAAGVRLIRIRDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM ++E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TLMSR   +  G
Sbjct: 63  HGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLMSRRATDEHG 122

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + I G  +  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I +  R +A+A
Sbjct: 123 AVLQIEGGTLGEVIPHAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWARSLALA 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P +    S       +        +    + +++GEDF + A+ ++     + L G   
Sbjct: 183 HPDLELRLSHNGKLSRRYKPGDWYSDVR--LIEILGEDFAHQALRVDHSGAGLRLHGCIV 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R NA+Q Y+++NGR V+D+ +   ++ AY++ +  GR+P  VL LE+DP +VDVN
Sbjct: 241 QPHYSRLNADQQYLYVNGRPVRDRSVAHAVKQAYSDVLYQGRHPAYVLFLELDPARVDVN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  +RFR+  +I +F+ +++Q  + +    T  +              P  H   +
Sbjct: 301 VHPAKHEVRFRDARLIHDFVYRTVQGTLAQTRAGTPPLAVGVGDVEGEGARPPGRHAVSF 360

Query: 359 AT----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-- 406
           +           S + +   L      +S  D   +    Y+     V ++         
Sbjct: 361 SGRRGGASHVLGSYSASTAPLMQGVPSVSVADAPAAYAALYAAPPTQVMDAVPQMQTGLP 420

Query: 407 -----------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                      G A AQ+H  YI+++  DGL++VD HAAHER+ +E++++  +   + +Q
Sbjct: 421 LAAGAGDVPLLGYAIAQLHGIYILAECADGLIVVDMHAAHERIGYERLKRAHDGIGLRTQ 480

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  + + E E  +     E L  LG +  R GP ++ +R IPA+LS+     LLRD
Sbjct: 481 PLLVPMTLMVAEREADVAECEAETLANLGFEVTRSGPGSLQVRSIPALLSQAEPEMLLRD 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++ +   T  + +  + +LATMAC+G++R+ R++   EMN LLR+ME    S QCNH
Sbjct: 541 VLSDLSEHGHTRRVAEARDTLLATMACHGAVRAHRRLSISEMNALLRDMEATERSGQCNH 600

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ +  L++I++ F R
Sbjct: 601 GRPTWARFSLAEIDRWFLR 619


>gi|209548102|ref|YP_002280019.1| DNA mismatch repair protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|238058936|sp|B5ZS00|MUTL_RHILW RecName: Full=DNA mismatch repair protein mutL
 gi|209533858|gb|ACI53793.1| DNA mismatch repair protein MutL [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 600

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 299/601 (49%), Positives = 412/601 (68%), Gaps = 9/601 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +AV+RHCTSK+S+   +I T GFRGEALPSIG+V+ L++ SR   +  G +
Sbjct: 61  SGMDAADLELAVRRHCTSKLSETLEDIRTLGFRGEALPSIGSVARLSIASRRRDSAGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++  K++ +RP A NPGTIVEVRDLFF  PARL FLK+E+ E   IT++++RMAIA+P
Sbjct: 121 IAVNAGKVAHLRPAAANPGTIVEVRDLFFATPARLKFLKTEKAEAGAITEIVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S   S+R  + F +T  +   R++QV+G+DF +NA+ L+    EI+L G+ G+P
Sbjct: 181 AVRFVLS--GSDRTTLEFPATGDDHLARMAQVLGKDFRDNAIALDAVREEISLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GR+PV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRHPVAVLSITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++A+ + G   ++  +  M+ SF     P+   P+ A 
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIREALARDGSRAATTGASDMLRSFRPGFQPQAQRPQTAW 358

Query: 361 SLTNTQEKL------FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-GIACAQI 413
           S   +  +       F +  + S + L           +     ++ T     G A AQI
Sbjct: 359 SAETSPFRPYQPTTGFSERPQASFDGLSMPTARAEPPFSPQPAAADTTARYPLGAARAQI 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ LL PEI+D+ E +C  +
Sbjct: 419 HANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQVLLIPEIVDIPEEDCDRL 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M+H  +L  LG+  ERFGP AIA+RE PA+L + +   L+R + DEI +  T   L  ++
Sbjct: 479 MQHAAELAELGLAIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEWDTASGLSAKL 538

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNHGRPT+I+LKLSDIE+LFG
Sbjct: 539 EYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIELKLSDIERLFG 598

Query: 594 R 594
           R
Sbjct: 599 R 599


>gi|226942900|ref|YP_002797973.1| DNA mismatch repair protein [Azotobacter vinelandii DJ]
 gi|259509928|sp|C1DLQ0|MUTL_AZOVD RecName: Full=DNA mismatch repair protein mutL
 gi|226717827|gb|ACO76998.1| DNA mismatch repair protein [Azotobacter vinelandii DJ]
          Length = 641

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 214/634 (33%), Positives = 341/634 (53%), Gaps = 41/634 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLDA + RV+  +  GG    ++ D+G 
Sbjct: 6   RIQLLSLRLANQIAAGEVVERPASVAKELLENSLDAGARRVDIEVEQGGVKLLRVRDDGC 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI   +D   + + GFRGEAL SIG+V+ LTL SR        
Sbjct: 66  GIAADDLPLALARHATSKIRELEDLERVASLGFRGEALASIGSVARLTLTSRTADAGQAW 125

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +   V+P A   GT VEVRDLFF  PAR  FL++E+ E   + +V+RR+A+A
Sbjct: 126 QVETEGRDMEARVQPAAYPVGTSVEVRDLFFNTPARRKFLRAEKTEFEHLQEVVRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F       +   ++          R++ V G  F+  A+ +  +   + L G+ G
Sbjct: 186 RFDVAFHLRHNGRSALALHEAGDETARARRVAAVCGPAFLEQALPIEVERAGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 246 LPTFSRSQADLQYFYVNGRMVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLEVDPAVVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-------------------------------- 326
           VHP K  +RFR+  +I +F+  ++ + +                                
Sbjct: 306 VHPTKHEVRFRDSRMIHDFLYGTLHRVLGEVRPEDRLAAPAAVAPPAPASGAAAGEFRGQ 365

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ------ENRLSTND 380
            +  +S +    +    +  +        P    + +     ++ +      E R     
Sbjct: 366 EEMPLSATPPAREPARPAAWKGAGAGYQAPSPRPARSAEAGGVYREFFAPLAEPRTEPAT 425

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
               +    S D    + S      LG A AQ+   YI+++   GLV+VD HAAHER+ +
Sbjct: 426 RTGEESGISSGDTSLGDTSPGGIPPLGYALAQLKGIYILAENAQGLVLVDMHAAHERITY 485

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E+++    S  +  Q LL PE + L + E     EH E   RLG + +R GP  +AIR+ 
Sbjct: 486 ERLKTAMASEGLRGQPLLVPEGLALSQREADCAEEHAEWFQRLGFELQRLGPETLAIRQT 545

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PA+L +    QL+RD++ ++++  ++  ++  +  +LATMAC+GS+R+ R++   EMN L
Sbjct: 546 PALLRQAEAGQLVRDVLADLLEYGSSDRIEAHLNELLATMACHGSVRANRRLTLPEMNAL 605

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LR+ME    S QCNHGRPT+ +L ++D++KLF R
Sbjct: 606 LRDMESTERSGQCNHGRPTWTQLGMADLDKLFLR 639


>gi|126666949|ref|ZP_01737925.1| DNA mismatch repair protein [Marinobacter sp. ELB17]
 gi|126628665|gb|EAZ99286.1| DNA mismatch repair protein [Marinobacter sp. ELB17]
          Length = 630

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 212/630 (33%), Positives = 349/630 (55%), Gaps = 38/630 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L  ++ NQIAAGE++ERP+  +KELIEN+LDA +SRV+  I  GG    ++ D+
Sbjct: 1   MPHIHLLPPRLANQIAAGEVVERPASVVKELIENALDAGASRVDVDIEQGGVKLIRVRDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ +E++ +A+ RH TSKI+  DD   + + GFRGEAL SI +VS L+L SR      
Sbjct: 61  GCGIAAEDLSLALSRHATSKITSLDDLEAVTSLGFRGEALASISSVSRLSLTSRTENQEA 120

Query: 118 GAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            +++ + G  + +   P A   G+ VEVRDLFF  PAR  FL++E+ E   + + +RR A
Sbjct: 121 ASKVEVEGRDMDAHVSPAAHPVGSTVEVRDLFFNTPARRKFLRTEKTEFGHVEECVRRQA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           ++     F     +     +    +  +   RI+ + G+ FI+NAV ++ ++  + L G+
Sbjct: 181 LSCFDTGFNLRHNQRAVQSLRPALSELDKERRIASLCGQQFIDNAVVISAEATGLKLWGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PTF+R   +  Y F+NGR ++D+ +   +R AY + +   R+   VL LE+DP  VD
Sbjct: 241 VALPTFSRSQTDLQYFFVNGRVIRDRLVAHAVRQAYRDVLYNNRHAAFVLYLEVDPGSVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA------ 350
           VNVHP K  +RFR+  ++ +F+ +++ KA+    +     L   +  S  ++NA      
Sbjct: 301 VNVHPTKHEVRFRDGRLVHDFLFRTLHKALA--DVRPDDHLRGAVAQSLGRENAFAAVTG 358

Query: 351 PKTHLPKYATSLTNT-------------------QEKLFLQENRLSTNDLLPSD------ 385
               LP   ++ + +                    +  +   ++L     L +       
Sbjct: 359 SAEGLPSPGSAASESALGYPGGIERTPGQVTHSDPQHQWQASDQLGFYQALNAGGGVSAG 418

Query: 386 -DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
              + +     + E       LG A AQ+H  YI++Q+  GL++VD HAAHER+ +E+M+
Sbjct: 419 RQASVAAHPPQMLEDSEQEPPLGYAIAQLHGIYILAQSRTGLIMVDMHAAHERITYERMK 478

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
           Q      + SQ LL P  + + + E  L+  H ++L +LG+  ER GP  +A+R+IPA+L
Sbjct: 479 QALAQQDLKSQPLLVPLSLAVSQKEAGLVETHGDELQQLGLVIERIGPETLAVRQIPALL 538

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              +  QL+RD++ ++I+   +  +Q   + +L TMAC+GS+R+ R++   EMN LLR+M
Sbjct: 539 RGADGEQLVRDVLSDLIEHGQSDRVQAVTQELLGTMACHGSVRANRQLTIPEMNSLLRDM 598

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E    S QCNHGRPT+  + L++++KLF R
Sbjct: 599 EATERSGQCNHGRPTWTVMTLAELDKLFLR 628


>gi|104783874|ref|YP_610372.1| DNA mismatch repair protein [Pseudomonas entomophila L48]
 gi|122985730|sp|Q1I447|MUTL_PSEE4 RecName: Full=DNA mismatch repair protein mutL
 gi|95112861|emb|CAK17589.1| DNA mismatch repair protein MutL [Pseudomonas entomophila L48]
          Length = 632

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 340/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R+E  +  GG    ++ DNG 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIEVEVEQGGVKLLRVRDNGG 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LTL SR        
Sbjct: 66  GIAPDDLPLALARHATSKIRELEDLEGVLSLGFRGEALASISSVARLTLTSRTADAGEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 126 QVETEGRDMTPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F         + ++  +       R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 186 RFDVGFHLRHNGKTIFSLHEATDEMARARRVGTICGPGFLEQALPIDVERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE DP  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLECDPTGVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK----------KMISSFHQD 348
           VHP K  +RFR   ++ +F+  ++ +A+                       + +  F   
Sbjct: 306 VHPTKHEVRFREGRMVHDFLYGTLHRALADVRPEDQLAAPAAASEIVRPSGQQVGEFGPQ 365

Query: 349 NAPKTHLPKYATSLTNTQEKL-----------FLQENRLSTNDLLPSDDPTYSEDNDPVE 397
              +   P         ++             +    R S    +      Y E   P++
Sbjct: 366 GEMRLASPVLEQPQAEPRQSFTPGSGAGSGYQYQYTPRPSQPLPVAETQAVYREFYAPLD 425

Query: 398 --------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                   ES+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 426 GTAPASLPESQGDIPPLGYALAQLKGIYILAENAVGLVLVDMHAAHERIMYERLKVAMAS 485

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + L + E     EH +   RLG + +R GP  +AIR+IPA+L +   
Sbjct: 486 EGLSGQPLLVPESLALSQREADCAEEHAQWFQRLGFELQRLGPETVAIRQIPALLKQAEA 545

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 546 NRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTER 605

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 606 SGQCNHGRPTWTQMGLDDLDKLFLR 630


>gi|71901139|ref|ZP_00683245.1| DNA mismatch repair protein [Xylella fastidiosa Ann-1]
 gi|71729103|gb|EAO31228.1| DNA mismatch repair protein [Xylella fastidiosa Ann-1]
          Length = 621

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/621 (35%), Positives = 349/621 (56%), Gaps = 29/621 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN++DA ++RV+  +   G    +I DNG
Sbjct: 1   MPIRQLPEILINQIAAGEVVERPASVVKELVENAIDAGATRVDIELEAAGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM ++E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TLMSR   +  G
Sbjct: 61  HGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLMSRRATDEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + I G  +  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I +  R +A+A
Sbjct: 121 AVLQIEGGTLGEVIPHAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWARSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P +    S       +        +    + +++GEDF + A+ ++     + L G   
Sbjct: 181 HPDLELRLSHNGKLSRRYKPGDWYSDAR--LIEILGEDFAHQALPVDHSGAGLRLHGCIV 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R NA+Q Y+++NGR V+D+ +   ++ AY++ +  GR+P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRLNADQQYLYVNGRPVRDRSVAHAVKQAYSDVLYQGRHPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKK--GISTSSVLSKKMISSFHQDNAPKTHLP 356
           VHPAK  +RFR+  +I +F+ +++Q  + +   G    +V    +         P  H  
Sbjct: 299 VHPAKHEVRFRDARLIHDFVYRTVQGTLAQTRAGTPPLAVGVGDVEGEGEGARPPGRHAV 358

Query: 357 KYAT----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY-- 404
            ++           S + +   L      +S  D   +    Y+     V ++       
Sbjct: 359 SFSGRRGGASHVLGSYSASTAPLMQGVPSVSVADAPAAYAALYAAPPTQVMDAVPQMQTG 418

Query: 405 -----------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                       LG A AQ+H  YI+++  DGL++VD HAAHER+ +E++++  +   + 
Sbjct: 419 LPLAAGAGDVPPLGYAIAQLHGIYILAECADGLIVVDMHAAHERIGYERLKRAHDGIGLR 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           +Q LL P  + + E E  +     E L  LG +  R GP ++ +R IPA+LS+     LL
Sbjct: 479 TQPLLVPMTLMVAEREADVAECEAETLANLGFEVTRSGPGSLQVRSIPALLSQAEPEMLL 538

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           RD++ ++ +   T  + +  + +LATMAC+G++R+ R++   EMN LLR+ME    S QC
Sbjct: 539 RDVLSDLSEHGHTRRVAEARDTLLATMACHGAVRAHRRLSISEMNALLRDMEATERSGQC 598

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+ +  L++I++ F R
Sbjct: 599 NHGRPTWARFSLAEIDRWFLR 619


>gi|34496797|ref|NP_901012.1| DNA mismatch repair protein [Chromobacterium violaceum ATCC 12472]
 gi|34102652|gb|AAQ59017.1| DNA mismatch repair protein [Chromobacterium violaceum ATCC 12472]
          Length = 631

 Score =  566 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 211/631 (33%), Positives = 332/631 (52%), Gaps = 42/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L + ++NQIAAGE++ERP+ A+KE++ENSLDA ++R+   +A GG    ++TDNG 
Sbjct: 3   RIQRLPDHLVNQIAAGEVVERPASALKEMLENSLDAGATRISVDLAQGGIKLIRVTDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI+  DD  ++ T GFRGE L S+ +VS LTL SRP   +   
Sbjct: 63  GIAADDLPLALDRHATSKIASLDDLESVSTLGFRGEGLASVASVSRLTLTSRPHDADHAH 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI      +  V P A   GT VEV DL+F  PAR  FLKSE  E         R+A+A+
Sbjct: 123 QIIAIDGTLHPVEPAAHPHGTSVEVVDLYFNTPARRKFLKSENTEYAHCAATFERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F         +++  QS      +R++ ++G+DF+  A+ L+ ++  + L G+   
Sbjct: 183 PEVEFLLRHNGKVAWRLPSQSA----EDRVAALLGKDFVAAAIPLDSQAGPLALSGFVAS 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+++ + +  Y ++NGR V+DK     +R AY + +   R+P   L   ++P  VDVNV
Sbjct: 239 PTYSKASRDAQYFYVNGRFVRDKTAQHALRQAYRDVLHHDRHPAYALFFTLEPSGVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------KKMISSFHQDNAPK 352
           HP K  +RFR    +  F+  S+ KA+       +  +           +          
Sbjct: 299 HPTKIEVRFRESQAVHQFLFHSVHKALAGTSAGAAPTVQVEGAETAAPQLPRGESAPLFA 358

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTN-------------DLLPSDDPTYSEDND----- 394
           +  P+ A+S     +    Q+  +  N               L  ++   S         
Sbjct: 359 SASPQPASSGAPAPQPFQYQQQSIPLNVAREAVGVYDKLFGGLREEERALSRPEPAMPSP 418

Query: 395 -----------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                           E     LG A AQ+H  YI+SQ  +GL++VD HAAHER+++E++
Sbjct: 419 AAPLLHPAVLAMPAHDENGIPPLGFALAQLHGVYILSQCAEGLILVDMHAAHERIVYERL 478

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +    S  I  Q LL P        E A   EH E++ RLG++     P  IA+R +P  
Sbjct: 479 KAALESDAIPLQPLLLPVSFAADRMEVATAHEHGEEMKRLGVELAPLSPTQIAVRGVPVW 538

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L   +  +L R ++ ++ +   T  L +R   +LATMAC+G++R+ R++   EMN LLR+
Sbjct: 539 LKDGDPVELARAVLKDVREFGLTQVLTERRNELLATMACHGAVRANRQLTLPEMNALLRD 598

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    S QCNHGRPT+ +L + D++KLF R
Sbjct: 599 MEATERSGQCNHGRPTWTRLTMRDLDKLFMR 629


>gi|66043837|ref|YP_233678.1| DNA mismatch repair protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254544|gb|AAY35640.1| DNA mismatch repair protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 648

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/625 (34%), Positives = 344/625 (55%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGS 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S   V   +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLYRALGDVRPENQLGGSVPVVAEARPSGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY----------------------- 389
             +      L   Q + F +               T                        
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAAGGGAGSGYQYQYTPRPTAGVPVAEAQSAYREFFAPLP 441

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S  +  + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 SAASASLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|86751283|ref|YP_487779.1| DNA mismatch repair protein [Rhodopseudomonas palustris HaA2]
 gi|123292100|sp|Q2ISE2|MUTL_RHOP2 RecName: Full=DNA mismatch repair protein mutL
 gi|86574311|gb|ABD08868.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris HaA2]
          Length = 597

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/596 (38%), Positives = 360/596 (60%), Gaps = 2/596 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+N+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    I D+G
Sbjct: 1   MPVRQLPETIVNRIAAGEVVERPASVVKELVENAIDAGASRIDIFSDGGGRRKIVIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ LT+ +R        
Sbjct: 61  SGMTRADLALAVDRHATSKLDDEDLLQIRTLGFRGEALPSIGAVARLTITTRHAGEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G   S + P A++ GT VEV DLFF  PARL FLK+++ E   I DV+RR+A+A 
Sbjct: 121 TLGVEGGDKSPIAPAALSQGTRVEVADLFFATPARLKFLKTDRTEAEAIRDVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF  NA+E+  +   + ++G+  
Sbjct: 181 PDIAFTLAGEERAPVTWAAALPGAPGQLIRLGDILGADFRANAIEVRSEREGVAVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PVV L + ++ R+VD N
Sbjct: 241 SPALTRANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVVALFVTLESREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++  +  +IS+F   + P  +    
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANSAGSVISTFRPASMPAANWDWR 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           A+             +               ++        +     LG A  QIH+ YI
Sbjct: 361 ASPSYPVGGSAIDAPSFAERPQAAFDVGGPSADIRTHEVAPDLLDRPLGAARTQIHETYI 420

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQT DGL++VDQHAAHER+++E+++    +  +  Q LL P+I+++ E     ++   +
Sbjct: 421 VSQTRDGLIVVDQHAAHERIVYERLKASLAANGVQRQILLIPDIVEMDEATVERLVARAD 480

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L + G+  E FGP A+A+RE P++L K +   LLRD+ + + +      L+ R+ ++ A
Sbjct: 481 ELAQFGLVVESFGPGAVAVRETPSLLGKTDAASLLRDLAEHMAEWDEALPLERRLMHVAA 540

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++L L+DIEKLFGR
Sbjct: 541 TMACHGSVRAGRVLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLTDIEKLFGR 596


>gi|330971552|gb|EGH71618.1| DNA mismatch repair protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 648

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/625 (34%), Positives = 343/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGS 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S   V   +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLYRALGDVRPENQLGGSVPVVAETRPSGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY----------------------- 389
             +      L   Q + F +               T                        
Sbjct: 382 GEMRLANNMLEQPQGEPFARPAAGGGAGSGYQYQYTPRPTAGVPVAEAQSAYREFFAPLP 441

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S     + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 SAAPASLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|99079943|ref|YP_612097.1| DNA mismatch repair protein [Ruegeria sp. TM1040]
 gi|99036223|gb|ABF62835.1| DNA mismatch repair protein MutL [Ruegeria sp. TM1040]
          Length = 644

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 266/620 (42%), Positives = 386/620 (62%), Gaps = 29/620 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++ DNG G
Sbjct: 25  IRQLDDGAINRIAAGEVVERPASAVKELVENAIDAGATRITVEIADGGKTLIRVIDNGCG 84

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT E++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  L + SR   ++  AQI
Sbjct: 85  MTPEDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLAITSRAEGHD-AAQI 143

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG  +  VRP A+  G+IVE+RDLFF  PARL F+++++ E   I+D ++R+A+A P 
Sbjct: 144 RVSGGHMEPVRPAALRQGSIVELRDLFFATPARLKFMRTDRAEMQAISDTVKRLAMAEPS 203

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R        NG+  +    R++ VIG +F  NA++++     I L 
Sbjct: 204 VGFTLRDVSGGGEGRVTFRADPMNGDLFDALHGRLAHVIGREFAENALKIDATREGIRLY 263

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L ++ DP  
Sbjct: 264 GYAALPTYSRGAAVTQFLFVNARPVKDKMLTGALRAAYMDFLSRDRHPAAALFIDCDPTL 323

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ +++ A+ + G   SS ++   + +   +    T 
Sbjct: 324 VDVNVHPAKSEVRFRDPGLARGLIVSALRHALAEAGHRASSTVAGATLGAMRPEQPTATG 383

Query: 355 LPK---------------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS-----EDND 394
            P+               YA       +         S          TYS     E   
Sbjct: 384 APRVYQMDRPSLGARHSAYAAQTPAQPQAPSYAAPPPSDAVGFAEFSGTYSGRLVEETPL 443

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
              +  A    LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++E++++      + +
Sbjct: 444 EEAQPPAEDQPLGAARGQVHENYIIAQTRDGMVIVDQHAAHERLVYERLKRQLAENGVAT 503

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL PEII+L +G+CA ++E  EDL RLG+  E FG +A+A+RE PAIL + N   ++R
Sbjct: 504 QGLLIPEIIELSDGDCARLLEVAEDLARLGLGIEAFGGSAVAVRETPAILGEVNAEAMIR 563

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           DI+DE+ D   +  +Q R+E IL+ +AC+GSIRSGR+M+  EMN LLREME+ P+S QCN
Sbjct: 564 DILDELADQGESQLVQARLEAILSRVACHGSIRSGRRMRGEEMNALLREMEQTPHSGQCN 623

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+++LKL+DIE+LFGR
Sbjct: 624 HGRPTYVELKLADIERLFGR 643


>gi|148549974|ref|YP_001270076.1| DNA mismatch repair protein [Pseudomonas putida F1]
 gi|148514032|gb|ABQ80892.1| DNA mismatch repair protein MutL [Pseudomonas putida F1]
          Length = 633

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 212/625 (33%), Positives = 340/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 7   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDIEVEQGGVKLLKVRDDGS 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 67  GISADDLPLALARHATSKIRELEDLEGVLSLGFRGEALASISSVARLTLTSRTASASEAW 126

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 127 QVETEGRDMTPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F       +   ++          R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 187 RFDVGFHLRHNGKSILSLHEAHDETARARRVGAICGPGFMEQALPIDVERNGLRLWGWVG 246

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 247 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPNGVDVN 306

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------------------NKKGISTSS 335
           VHP K  +RFR    + +F+  ++ +A+                        + G     
Sbjct: 307 VHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDQLAAPAAVPELVRPTGQQAGEFGPQ 366

Query: 336 VLSKKMISSFHQDNAPKTHLPK------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
              +       Q  AP+           Y    T    +        +          T 
Sbjct: 367 GEMRLASPVLEQPRAPQQSFSNGGSGAGYQYQYTPRPSQPLPAAEAQAVYREFYKPLDTG 426

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +     + ES+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 427 AAPATALPESQGDIPPLGYALAQLKGIYILAENAVGLVLVDMHAAHERIMYERLKVAMAS 486

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + L + E     EH +   RLG + +R GP  +AIR+IPA+L +   
Sbjct: 487 EGLSGQPLLVPETLALSQREADCAEEHAQWFQRLGFELQRLGPETLAIRQIPALLKQAEA 546

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 547 NRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTER 606

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 607 SGQCNHGRPTWTQMGLDDLDKLFLR 631


>gi|312958650|ref|ZP_07773170.1| DNA mismatch repair protein [Pseudomonas fluorescens WH6]
 gi|311287193|gb|EFQ65754.1| DNA mismatch repair protein [Pseudomonas fluorescens WH6]
          Length = 640

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 213/630 (33%), Positives = 348/630 (55%), Gaps = 39/630 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENS+D+ + R++  +  GG    ++ D+G 
Sbjct: 11  RIELLSPRLANQIAAGEVVERPASVIKELLENSIDSGAKRIDVDVEQGGVKLLRVRDDGS 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR        
Sbjct: 71  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRNAEQAW 130

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+R+A+A
Sbjct: 131 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRLALA 190

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++          R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 191 RFDVAFHLRHNGKTILSLHEAHDEAARARRVSAICGAGFLEQALPIEIERNGLRLWGWVG 250

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 251 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAVVDVN 310

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP------- 351
           VHP K  +RFR+  ++ +F+  ++ +A+    +     LS  ++++  + + P       
Sbjct: 311 VHPTKHEVRFRDGRMVHDFLYGTLHRALG--DVRPDDQLSAPIVTAMVRPSGPEAGEFGP 368

Query: 352 -----------KTHLPKYATSLTN---------------TQEKLFLQENRLSTNDLLPSD 385
                      ++  P+ + S T                 Q  + + E + +  +     
Sbjct: 369 QGEMSLAGNLLQSPAPQPSYSSTPGSGSGAGYQYQYTPRPQSTVPVAEAQAAYREFFAXX 428

Query: 386 DPTYSEDNDP-VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                      + E       LG A AQ+   YI+++   GLV+VD HAAHER+++E+++
Sbjct: 429 XXXXXXXXAVSLPEGGGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLK 488

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
               S  ++ Q LL PE + + + E     EH +   +LG + +R GP  +AIR+IPA+L
Sbjct: 489 IAMASEGLSGQPLLVPESLAVSQREADCAEEHHDVFQKLGFELQRLGPETLAIRQIPALL 548

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            +    +L+ D++ ++++  T+  +Q  I  +L TMAC+G++R+ R++   EMN LLR+M
Sbjct: 549 KQAEANRLVADVLADLMEYGTSDRIQAHINELLGTMACHGAVRANRRLALPEMNGLLRDM 608

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E    S QCNHGRPT+ ++ L D++KLF R
Sbjct: 609 ENTERSGQCNHGRPTWTQMGLDDLDKLFLR 638


>gi|26991574|ref|NP_746999.1| DNA mismatch repair protein [Pseudomonas putida KT2440]
 gi|37999611|sp|Q88DD1|MUTL_PSEPK RecName: Full=DNA mismatch repair protein mutL
 gi|24986662|gb|AAN70463.1|AE016688_2 DNA mismatch repair protein MutL [Pseudomonas putida KT2440]
          Length = 632

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 212/625 (33%), Positives = 340/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDIEVEQGGVKLLKVRDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 66  GISADDLPLALARHATSKIRELEDLEGVLSLGFRGEALASISSVARLTLTSRTASASEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 126 QVETEGRDMTPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F       +   ++          R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 186 RFDVGFHLRHNGKSILSLHEAHDEIARARRVGAICGPGFMEQALPIDVERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPNGVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------------------NKKGISTSS 335
           VHP K  +RFR    + +F+  ++ +A+                        + G     
Sbjct: 306 VHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDQLAAPAAVPELVRPTGQQAGEFGPQ 365

Query: 336 VLSKKMISSFHQDNAPKTHLPK------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
              +       Q  AP+           Y    T    +        +          T 
Sbjct: 366 GEMRLASPVLEQPRAPQQSFSNGGSGAGYQYQYTPRPSQPLPAAEAQAVYREFYKPLETG 425

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +     + ES+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 426 AAPATALPESQGDIPPLGYALAQLKGIYILAENAVGLVLVDMHAAHERIMYERLKVAMAS 485

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + L + E     EH +   RLG + +R GP  +AIR+IPA+L +   
Sbjct: 486 EGLSGQPLLVPETLALSQREADCAEEHAQWFQRLGFELQRLGPETLAIRQIPALLKQAEA 545

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 546 NRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTER 605

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 606 SGQCNHGRPTWTQMGLDDLDKLFLR 630


>gi|71275150|ref|ZP_00651437.1| DNA mismatch repair protein [Xylella fastidiosa Dixon]
 gi|71898231|ref|ZP_00680405.1| DNA mismatch repair protein [Xylella fastidiosa Ann-1]
 gi|170731141|ref|YP_001776574.1| DNA mismatch repair protein [Xylella fastidiosa M12]
 gi|238687954|sp|B0U5C6|MUTL_XYLFM RecName: Full=DNA mismatch repair protein mutL
 gi|71163959|gb|EAO13674.1| DNA mismatch repair protein [Xylella fastidiosa Dixon]
 gi|71731970|gb|EAO34027.1| DNA mismatch repair protein [Xylella fastidiosa Ann-1]
 gi|167965934|gb|ACA12944.1| DNA mismatch repair protein MutL [Xylella fastidiosa M12]
          Length = 621

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/621 (35%), Positives = 349/621 (56%), Gaps = 29/621 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN++DA ++RV+  +   G    +I DNG
Sbjct: 1   MPIRQLPEILINQIAAGEVVERPASVVKELVENAIDAGATRVDIELEAAGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM ++E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TLMSR   +  G
Sbjct: 61  HGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLMSRRATDEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + I G  +  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I +  R +A+A
Sbjct: 121 AVLQIEGGTLGEVIPHAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWARSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P +    S       +        +    + +++GEDF + A+ ++     + L G   
Sbjct: 181 HPDLELRLSHNGKLSRRYKPGDWYSDAR--LIEILGEDFAHQALRVDHSGAGLRLHGCIV 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R NA+Q Y+++NGR V+D+ +   ++ AY++ +  GR+P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRLNADQQYLYVNGRPVRDRSVAHAVKQAYSDVLYQGRHPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKK--GISTSSVLSKKMISSFHQDNAPKTHLP 356
           VHPAK  +RFR+  +I +F+ +++Q  + +   G    +V    +         P  H  
Sbjct: 299 VHPAKHEVRFRDARLIHDFVYRTVQGTLAQTRAGTPPLAVGVGDVEGEGEGARPPGRHAV 358

Query: 357 KYAT----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY-- 404
            ++           S + +   L      +S  D   +    Y+     V ++       
Sbjct: 359 SFSGRRGGASHVLGSYSTSTAPLMQGVPSVSVADAPAAYAALYAAPPTQVMDAVPQMQTG 418

Query: 405 -----------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                       LG A AQ+H  YI+++  DGL++VD HAAHER+ +E++++  +   + 
Sbjct: 419 LPLAAGAGDVPPLGYAIAQLHGIYILAECADGLIVVDMHAAHERIGYERLKRAHDGIGLR 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           +Q LL P  + + E E  +     E L  LG +  R GP ++ +R IPA+LS+     LL
Sbjct: 479 TQPLLVPMTLMVAEREADVAECEAETLASLGFEVTRSGPGSLQVRSIPALLSQAEPEMLL 538

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           RD++ ++ +   T  + +  + +LATMAC+G++R+ R++   EMN LLR+ME    S QC
Sbjct: 539 RDVLSDLSEHGHTRRVAEARDTLLATMACHGAVRAHRRLSISEMNALLRDMEATERSGQC 598

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+ +  L++I++ F R
Sbjct: 599 NHGRPTWARFSLAEIDRWFLR 619


>gi|330984562|gb|EGH82665.1| DNA mismatch repair protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 648

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 344/625 (55%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    + +   R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTSRARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S    +  +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAVEPRPTGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------- 393
             +      L   Q + F +               T    +                   
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAAGGGAGSGYQYQYTPRPTSGVPVAEAQSAYREFFAPLP 441

Query: 394 ----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                 + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 STAPSSLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|257482413|ref|ZP_05636454.1| DNA mismatch repair protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331009762|gb|EGH89818.1| DNA mismatch repair protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 648

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 345/625 (55%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    + +   R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTSRARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S    +  +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAVEPRPTGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------- 393
             +      L + Q + F +               T    +                   
Sbjct: 382 GEMRLANNVLEHPQGEPFARPAAGGGAGSGYQYQYTPRPTSGVPVAEAQSAYREFFAPLP 441

Query: 394 ----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                 + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 STAPSSLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|167035937|ref|YP_001671168.1| DNA mismatch repair protein [Pseudomonas putida GB-1]
 gi|189030406|sp|B0KKZ7|MUTL_PSEPG RecName: Full=DNA mismatch repair protein mutL
 gi|166862425|gb|ABZ00833.1| DNA mismatch repair protein MutL [Pseudomonas putida GB-1]
          Length = 632

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 209/625 (33%), Positives = 339/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDVEVEQGGVKLLKVRDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LT+ SR    +   
Sbjct: 66  GISADDLPLALARHATSKIRELEDLEGVMSLGFRGEALASISSVARLTMTSRTASASEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 126 QVETEGRDMTPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F       +   ++          R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 186 RFDVGFHLRHNGKSILSLHEAHDETARARRVGAICGPGFMEQALPIDVERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPNGVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------------------NKKGISTSS 335
           VHP K  +RFR    + +F+  ++ +A+                        + G     
Sbjct: 306 VHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDQLAAPAAVPELARPTGQQAGEFGPQ 365

Query: 336 VLSKKMISSFHQDNAPKTHLPK------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
              +       Q  AP+           Y    T    +        +            
Sbjct: 366 GEMRLASPVLEQPRAPQQSFSNGGSGAGYQYQYTPRPSQPLPAAEAQAVYREFYKPLDNG 425

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +     + ES+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 426 AAAATALPESQGDIPPLGYALAQLKGIYILAENAVGLVLVDMHAAHERIMYERLKVAMAS 485

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + L + E     EH +   RLG + +R GP  +A+R+IPA+L +   
Sbjct: 486 EGLSGQPLLVPETLALSQREADCAEEHAQWFQRLGFELQRLGPETLAVRQIPALLKQAEA 545

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 546 NRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTER 605

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 606 SGQCNHGRPTWTQMGLDDLDKLFLR 630


>gi|330951472|gb|EGH51732.1| DNA mismatch repair protein [Pseudomonas syringae Cit 7]
          Length = 648

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 218/625 (34%), Positives = 343/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGS 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S   V   +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLYRALGDVRPENQLGGSVPVVAETRPSGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY----------------------- 389
             +      L   Q + F +               T                        
Sbjct: 382 GEMRLANNVLEQPQGESFARPAAGGGAGSGYQYQYTPRPTAGVPVAEAQSAYREFFAPLP 441

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S     + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 SAAPASLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|289623754|ref|ZP_06456708.1| DNA mismatch repair protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648629|ref|ZP_06479972.1| DNA mismatch repair protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|320321886|gb|EFW77982.1| DNA mismatch repair protein [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331009|gb|EFW86983.1| DNA mismatch repair protein [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330865892|gb|EGH00601.1| DNA mismatch repair protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 648

 Score =  565 bits (1455), Expect = e-159,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 343/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    + +   R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTSRARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S       +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAAEPRPTGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------- 393
             +      L   Q + F +               T    +                   
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAAGGGAGSGYQYQYTPRPTSGVPVAEAQSAYREFFAPLP 441

Query: 394 ----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                 + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 STAPSSLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|288958816|ref|YP_003449157.1| DNA mismatch repair protein [Azospirillum sp. B510]
 gi|288911124|dbj|BAI72613.1| DNA mismatch repair protein [Azospirillum sp. B510]
          Length = 643

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/642 (37%), Positives = 373/642 (58%), Gaps = 48/642 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L E ++N+IAAGE++ERP+ A+KEL+EN++DA ++R++ V   GGKS   +TD+G
Sbjct: 1   MPIRLLPETLVNRIAAGEVVERPAAAVKELVENAIDAGATRIDVVARDGGKSLIAVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT++E+ +AV+RH TSK+  DD  +I + GFRGEALPSIGAVS LT+ SR    ++  
Sbjct: 61  CGMTADELVLAVERHATSKLPGDDLLDIRSLGFRGEALPSIGAVSCLTITSRARGADSAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +      S +P A+  GT +EVRDLF  +PARL FLK+ + E + I D + R+A+A+
Sbjct: 121 SLTVDAGAKGSPQPAALAQGTRIEVRDLFAAVPARLKFLKASRTEYDHIADCLERLAMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V+FT S       +++            R+  ++G DF  NAV +      +TL G+ 
Sbjct: 181 PAVAFTLSDGGRGGLRLSAAQGELLDARLTRLGALMGRDFQENAVPVTAAREGVTLAGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT +R  A   ++F+NGR V+DK ++  +R AYA+ +P  R+P++ L L+IDP++VDV
Sbjct: 241 GLPTLHRPTAKHQHLFVNGRPVRDKLMVGAVRAAYADFLPRDRHPMLALFLDIDPQEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP------ 351
           NVHPAK+ +RFR+  ++R  I+ S++ A+ + G   S+ +    + +   +         
Sbjct: 301 NVHPAKAEVRFRDQGLVRGLIVGSLKHALAEAGHRASTTVGLATLGALRPEPGGGSVGES 360

Query: 352 ----------------------------------KTHLPKYATSLTNTQEKLFLQENRL- 376
                                                L + + +     + L   + RL 
Sbjct: 361 GGESGGFTPSPLPYGRSGGGSGSGWGGSYAPAALPRGLAERSAAFQAPAQGLPPLQGRLG 420

Query: 377 ----STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                        +    +   P  E     + LG A AQ+H  YI++QT +G+VIVDQH
Sbjct: 421 GFGNGFAPAARPPEYRAPDPAAPTPEPPPDSHPLGAARAQLHTTYIVAQTREGIVIVDQH 480

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHERL++E+M+       +  Q LL PE+I+L E     ++    +L  LG+  E FG 
Sbjct: 481 AAHERLVYERMKTALLEGGVKRQALLIPELIELDEPSANRLLARGAELAELGLVIEGFGH 540

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
             + +RE+PA+L + ++  L+RD+ +E+ +     +L++R+E + ATMAC+GS+R+GR +
Sbjct: 541 GCVMVREVPALLGQSDVKNLIRDLAEELSELGDALSLKERLEEVCATMACHGSVRAGRTL 600

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EMN LLR+ME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 601 SVDEMNALLRQMEATPHSGQCNHGRPTYVELKLADIERLFGR 642


>gi|190890558|ref|YP_001977100.1| DNA mismatch repair protein [Rhizobium etli CIAT 652]
 gi|238692496|sp|B3PRD9|MUTL_RHIE6 RecName: Full=DNA mismatch repair protein mutL
 gi|190695837|gb|ACE89922.1| DNA mismatch repair protein [Rhizobium etli CIAT 652]
          Length = 606

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 303/607 (49%), Positives = 408/607 (67%), Gaps = 15/607 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +AV+RHCTSKIS+   +I T GFRGEALPSIG+V+ L + SR   +  G +
Sbjct: 61  SGMEATDLELAVRRHCTSKISETLEDIRTLGFRGEALPSIGSVARLNIASRRRDSAGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++G KI  +RP A NPGTIVEVRDLFF  PARL FLKSE+ E   IT++++RMAIA+P
Sbjct: 121 IAVAGGKIVHIRPAAANPGTIVEVRDLFFATPARLKFLKSEKAEAGAITEIVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S   S+R  + F +T  +   R++QV+G++F +NA+ L+    +I+L G+ G+P
Sbjct: 181 AVRFVLS--GSDRTTLEFPATGDDHLARMAQVLGKEFRDNAILLDAVREDISLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRYPVAVLSITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++A+ + G   ++  +  M+ +F     P    P+   
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIREALARDGSRAATTGASDMLRAFRPGFQPHAQRPQAPW 358

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-------------HYQLG 407
           S   +  + +      S       D  +       ++ S                 Y LG
Sbjct: 359 SAETSPFRPYPPAAGFSERPQASFDRLSMPTARAELQPSPQPGAPEPAASAETTGRYPLG 418

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A AQIH NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ LL PEIIDL E
Sbjct: 419 AARAQIHANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQVLLIPEIIDLPE 478

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +C  +M+H  +L  LG+  ERFGP AIA+RE PA+L + +   L+R + DEI +  T  
Sbjct: 479 EDCDRLMQHAAELSELGLAIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEWDTAS 538

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L  ++E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNHGRPT+I+LKLSD
Sbjct: 539 GLSAKLEYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIELKLSD 598

Query: 588 IEKLFGR 594
           IE+LFGR
Sbjct: 599 IERLFGR 605


>gi|302189791|ref|ZP_07266464.1| DNA mismatch repair protein [Pseudomonas syringae pv. syringae 642]
          Length = 648

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 217/625 (34%), Positives = 343/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S   V   +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLYRALGDVRPENQLGGSVPVVAETRPSGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------- 393
             +      L   Q + F +               T    +                   
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAAAGGTGSGYQYQYTPRPTSGVPVAEAQSAYREFFAPLP 441

Query: 394 ----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                 + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 SAAPASLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|71738065|ref|YP_272865.1| DNA mismatch repair protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298484916|ref|ZP_07003015.1| DNA mismatch repair protein MutL [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71558618|gb|AAZ37829.1| DNA mismatch repair protein MutL [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160603|gb|EFI01625.1| DNA mismatch repair protein MutL [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 648

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 216/625 (34%), Positives = 343/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTMLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S       +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAAEPRPTGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY----------------------- 389
             +      L   Q + F +               T                        
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAAGGGAGSGYQYQYTPRPTSGVPVAEAQSAYREFFAPLP 441

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S  +  + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 SAASSSLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 562 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 621

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 622 SGQCNHGRPTWTQMGLNDLDKLFLR 646


>gi|134093680|ref|YP_001098755.1| DNA mismatch repair protein [Herminiimonas arsenicoxydans]
 gi|166232092|sp|A4G289|MUTL_HERAR RecName: Full=DNA mismatch repair protein mutL
 gi|133737583|emb|CAL60626.1| DNA mismatch repair protein MutL [Herminiimonas arsenicoxydans]
          Length = 612

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 205/605 (33%), Positives = 336/605 (55%), Gaps = 16/605 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS+++I+QIAAGE++ERPS  +KEL+EN+LDA ++ +   +  GG     ITDNG 
Sbjct: 10  PIQALSDQLISQIAAGEVVERPSAVVKELLENALDAGATHISVRLEQGGVKRIAITDNGR 69

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A+ RH TSKI+   +  N+ T GFRGEAL SI +VS LTL SR        
Sbjct: 70  GIAPEQLPLALARHATSKINSLTELENVATLGFRGEALASIASVSQLTLTSRTADAAHAW 129

Query: 120 QI--AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           +I    S ++ S+V P +   GT V+V DL+F  PAR  FLK+EQ E     +V+RR+A+
Sbjct: 130 EISGVQSIDQKSTVAPSSGTAGTTVDVLDLYFNTPARRKFLKTEQTEFGHCAEVVRRIAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+F+ +                +   R + ++G +F    + L E +  + L G+ 
Sbjct: 190 SRPDVAFSLTHNGKTIDHW----AVNDIARRSAHILGNEFSAARLPLKETAGPLRLHGFI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT ++   +  Y ++NGR V+DK ++  +R+AY + +   RYP  V+ LE+DP  VDV
Sbjct: 246 GLPTASKARGDAQYFYVNGRFVRDKLLMHAVRSAYQDVLHGDRYPSYVISLELDPALVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-----KGISTSSVLSKKMISSFHQDNAPK 352
           NVHP+K  +RFR+   +  F+  ++ +A+ +      G + S   +      + ++    
Sbjct: 306 NVHPSKIEVRFRDSRAVHQFVFHAVTRALAQTSATAFGAAPSPTPAPSSALPWLREQQQS 365

Query: 353 THLPKYATSLTNTQEKLFLQE---NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
           T  P++ +     Q          N  ++ND   +    ++  +          + LG A
Sbjct: 366 TFAPQFNSPYGVAQSAANYGALFANGPASNDSNSAAPSLHTAGSHGATTLPDDEFPLGFA 425

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            AQ+H  +I++Q T GLV+VD HAAHER+++E+++   +  ++  Q LL P        E
Sbjct: 426 LAQLHGIFILAQNTKGLVLVDMHAAHERILYEQLKHALDDNELQVQPLLIPITFYADGME 485

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
                ++ + LH LG       P  +A+R +PA+L   +   L RD++ ++ +   +  L
Sbjct: 486 VGTTEDNQDILHALGFDIAALSPTTLAVRAVPALLKNADAQTLARDVLRDVREFGGSRVL 545

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            +R   +L T+AC+ ++R+ R +   EMN LLR+ME    + QCNHGRPT+++L LSD++
Sbjct: 546 LERRNELLGTLACHTAVRANRTLTVPEMNALLRQMEATERADQCNHGRPTWVQLGLSDLD 605

Query: 590 KLFGR 594
           KLF R
Sbjct: 606 KLFER 610


>gi|254510493|ref|ZP_05122560.1| DNA mismatch repair protein MutL [Rhodobacteraceae bacterium KLH11]
 gi|221534204|gb|EEE37192.1| DNA mismatch repair protein MutL [Rhodobacteraceae bacterium KLH11]
          Length = 616

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/602 (43%), Positives = 382/602 (63%), Gaps = 11/602 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++TD+G G
Sbjct: 15  IRQLDDAAINRIAAGEVVERPASAVKELVENAIDAGATRIAIDIADGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + + ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  L++ SR P     A I
Sbjct: 75  IAASDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLSITSRVPGAE-AASI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG ++ +VRP A+  GT+VE+RDLF+  PARL F+++++ E   I+D+++R+A+A P 
Sbjct: 134 RVSGGQMQAVRPAALRAGTVVELRDLFYATPARLKFMRTDRAEAQAISDIVKRLAMAEPA 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           VSFT    S     R        NG+  +    R+++V+G +F  NA++++     I L 
Sbjct: 194 VSFTLRDVSGGGEGRVTFRTDRENGDLFDALHARLARVLGREFAENALQIDATREGIRLY 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   Y+F+NGR V+DK +   +R AY + +   R+P   L ++ DP  
Sbjct: 254 GYAALPTYSRGAAVAQYLFVNGRPVRDKMLTGALRAAYFDFLSRDRHPAAALFIDCDPTL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ S++ A+ + G   SS ++   + +   + AP   
Sbjct: 314 VDVNVHPAKSEVRFRDPGLARGLIVSSLRHALAEAGHRASSTVANATLGAMRPEPAPSAP 373

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSD--DPTYSEDNDPVEESEATHYQLGIACAQ 412
              Y     +   +      +      L  D          +     E     LG A  Q
Sbjct: 374 ARVYQMDRPSPAARQAAYRAQSPGFAELSQDYSGRVVDPAPEVAPVEEPQDLPLGAARGQ 433

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H+NYII+QT DG+VIVDQHAAHERL++EK++       + +Q LL PEI++L +G+C  
Sbjct: 434 VHENYIIAQTADGMVIVDQHAAHERLVYEKLKSQMAENGVAAQALLIPEIVELSDGDCTR 493

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +M   EDL RLG+  E FG  AIAIRE PAIL + +   ++ DI+DE+ D   +  +Q R
Sbjct: 494 LMAVAEDLSRLGLTIEAFGGGAIAIRETPAILGEVDARAMILDILDELADQGESQMVQAR 553

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           IE IL+ +AC+GSIRSGR+M++ EMN LLREME  P+S QCNHGRPT+++LKL DIE+LF
Sbjct: 554 IEAILSRVACHGSIRSGRRMRAEEMNALLREMEATPHSGQCNHGRPTYVELKLGDIERLF 613

Query: 593 GR 594
           GR
Sbjct: 614 GR 615


>gi|313500875|gb|ADR62241.1| MutL [Pseudomonas putida BIRD-1]
          Length = 632

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 211/625 (33%), Positives = 339/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDVEVEQGGVKLLKVRDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 66  GISADDLPLALARHATSKIRELEDLEGVLSLGFRGEALASISSVARLTLTSRTASASEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 126 QVETEGRDMTPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F       +   ++          R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 186 RFDVGFHLRHNGKSILSLHEAHDETARARRVGAICGPGFMEQALPIDVERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPNGVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------------------NKKGISTSS 335
           VHP K  +RFR    + +F+  ++ +A+                        + G     
Sbjct: 306 VHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDQLAAPAAVPELVRPTGQQAGEFGPQ 365

Query: 336 VLSKKMISSFHQDNAPKTHLPK------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
              +       Q  AP+           Y    T    +        +            
Sbjct: 366 GEMRLASPVLEQPRAPQQSFSNSGSGAGYQYQYTPRPSQPLPAAEAQAVYREFYKPLEGG 425

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +     + ES+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 426 AAPATALPESKGDIPPLGYALAQLKGIYILAENAVGLVLVDMHAAHERIMYERLKVAMAS 485

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + L + E     EH +   RLG + +R GP  +AIR+IPA+L +   
Sbjct: 486 EGLSGQPLLVPETLALSQREADCAEEHSQWFQRLGFELQRLGPETLAIRQIPALLKQAEA 545

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 546 NRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTER 605

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 606 SGQCNHGRPTWTQMGLDDLDKLFLR 630


>gi|325271237|ref|ZP_08137782.1| DNA mismatch repair protein [Pseudomonas sp. TJI-51]
 gi|324103640|gb|EGC00942.1| DNA mismatch repair protein [Pseudomonas sp. TJI-51]
          Length = 632

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/625 (33%), Positives = 337/625 (53%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLANQIAAGEVVERPASVAKELLENSLDSGARRIDVEVEQGGVKLLKVRDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LTL SR        
Sbjct: 66  GISADDLPLALARHATSKIRELEDLEGVLSLGFRGEALASISSVARLTLTSRTASATEAW 125

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +   V+P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 126 QVETEGRDMLPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F       +   ++          R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 186 RFDVGFHLRHNGKSILSLHEAHDEVARARRVGAICGPGFMEQALPIDVERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPNGVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------------------NKKGISTSS 335
           VHP K  +RFR    + +F+  ++ +A+                        + G     
Sbjct: 306 VHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDQLAAPAAVPEAVRATGQQAGEFGPQ 365

Query: 336 VLSKKMISSFHQDNAPKTHLPK------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
              +       Q  AP+           Y    T             +            
Sbjct: 366 GEMRLASPVLEQPRAPQHTASNGGSGAGYQYQYTPRPSPPLPAAEAQAVYREFYKPLDNG 425

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +     + ES+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 426 AAPAATLPESQGDIPPLGYALAQLKGIYILAENAVGLVLVDMHAAHERIMYERLKVAMAS 485

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + L + E     EH +   RLG + +R GP  +AIR+IPA+L +   
Sbjct: 486 EGLSGQPLLVPETLALSQREADCAEEHAQWFQRLGFELQRLGPETLAIRQIPALLKQAEA 545

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 546 NRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTER 605

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 606 SGQCNHGRPTWTQMGLDDLDKLFLR 630


>gi|27382604|ref|NP_774133.1| DNA mismatch repair protein [Bradyrhizobium japonicum USDA 110]
 gi|81841408|sp|Q89DE6|MUTL_BRAJA RecName: Full=DNA mismatch repair protein mutL
 gi|27355776|dbj|BAC52758.1| DNA mismatch repair protein [Bradyrhizobium japonicum USDA 110]
          Length = 603

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 235/602 (39%), Positives = 371/602 (61%), Gaps = 8/602 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E+++N+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    ITD+G
Sbjct: 1   MPVRQLPEQVVNRIAAGEVVERPASVVKELVENAIDAGASRIDVFTDGGGRRRIGITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT++++ +AV+RH TSK+ D D   I T GFRGEALPSIG+V+ L++ +R        
Sbjct: 61  SGMTAKDLALAVERHATSKLDDEDLLQIRTLGFRGEALPSIGSVARLSITTRHAGEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G + S + P A+  GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 ALTVEGGEKSEIMPAALAHGTRVEVNDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V+FT +  +                  R+  ++G +F ++A+E++ +   I + GY  
Sbjct: 181 PDVAFTLAGEERAPVTWAAALPGAAGRLTRLGDILGAEFRSHAIEVHAEREGIVVSGYAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   + NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PV+ L + +DPR+VD N
Sbjct: 241 APALTKANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVLALFVTLDPREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+  +++A+ ++G  T++   +  +SSF     P+     +
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHGLKEALAREGRRTAANSGESALSSFRPAFTPRPASWDW 360

Query: 359 ATSLTNT--QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA----Q 412
             S +        F      +  +   +     +   D   E++     +         Q
Sbjct: 361 RASPSAPVAPMPSFDGAAAPAFTERAQAAFDVGAPSADVRFETQPVSDLVDRPLGAARTQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH+ YI+SQT DGL+IVDQHAAHER+++E ++    +  +  Q LL PEI+++ E     
Sbjct: 421 IHETYIVSQTRDGLIIVDQHAAHERIVYEGLKASLAANGVQRQILLIPEIVEMDEATVER 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++E  ++L   G+  E FGP A+A+RE P++L K N   LLRD+ + + +      L+ R
Sbjct: 481 LLERSDELASFGLAIESFGPGAVAVRETPSLLGKTNAGGLLRDLSEHMAEWDEALPLERR 540

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           + ++ ATMAC+GS+R+GR+++  EMN LLREME+ PNS QCNHGRPT+++LKLSD+EKLF
Sbjct: 541 LMHVAATMACHGSVRAGRRLRPEEMNALLREMEETPNSGQCNHGRPTYVELKLSDVEKLF 600

Query: 593 GR 594
           GR
Sbjct: 601 GR 602


>gi|218682547|ref|ZP_03530148.1| DNA mismatch repair protein [Rhizobium etli CIAT 894]
          Length = 600

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 299/601 (49%), Positives = 408/601 (67%), Gaps = 9/601 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   A GGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATASGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +AV+RHCTSK+SD   +I T GFRGEALPSIG+V+ L++ SR   +  G +
Sbjct: 61  SGMDAADLELAVRRHCTSKLSDTLEDIRTLGFRGEALPSIGSVARLSIASRRRDSAGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++  KI+ +RP A NPGTIVEVRDLFF  PARL FLKSE+ E   IT++++RMAIA+P
Sbjct: 121 IAVNAGKITHLRPAAANPGTIVEVRDLFFATPARLKFLKSEKAEAGAITEIVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S   S+R  + F +T  +   R++QV+G++F +NA+ L+    EI+L G+ G+P
Sbjct: 181 AVRFVLS--GSDRATLEFPATGDDHLARMAQVLGKEFRDNAIALDAVREEISLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRYPVAVLSITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++A+ + G   ++  +  M+ +F          P+ A 
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIREALARDGSRAATTGASDMLRAFRPGFQSYAPRPQTAW 358

Query: 361 SLTNTQEKLF------LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-GIACAQI 413
           S   +  + +       +  + S + L         + +      E       G A AQI
Sbjct: 359 SAETSPSRPYQPAMGLSERPQASFDGLSMPTARAEPQFSPQPAAPEPAARYPLGAARAQI 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ LL PEIID+ E +C  +
Sbjct: 419 HANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQVLLIPEIIDIPEEDCDRL 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M+H  +L  LG+  ERFGP AIA+RE PA+L + +   L+R + DEI +  T   L  ++
Sbjct: 479 MQHAAELSELGLSIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEWDTASGLSAKL 538

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNHGRPT+I+LKLSDIE+LFG
Sbjct: 539 EYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIELKLSDIERLFG 598

Query: 594 R 594
           R
Sbjct: 599 R 599


>gi|28872058|ref|NP_794677.1| DNA mismatch repair protein MutL [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|37999555|sp|Q87VJ2|MUTL_PSESM RecName: Full=DNA mismatch repair protein mutL
 gi|28855311|gb|AAO58372.1| DNA mismatch repair protein MutL [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 645

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/622 (35%), Positives = 348/622 (55%), Gaps = 29/622 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDIDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  + +  +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMDARVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLHEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S  +    +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPAAAEPRPTGPDAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQE------------NRLSTNDLLPSDDPTYSED-------- 392
             +      L   Q + F +              R +T   +      Y E         
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAGGGSGSGYQYSPRPTTGVPVAEAQSAYREFFAPLPGTT 441

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
              + ES +    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +  +
Sbjct: 442 PSALPESPSDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANEGL 501

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
           + Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +    +L
Sbjct: 502 SGQPLLVPESIAVSQREADCAEEHITTFQRLGFELQRLGPETLAIRQIPALLKQAEANRL 561

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S Q
Sbjct: 562 VSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERSGQ 621

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+ ++ LSD++KLF R
Sbjct: 622 CNHGRPTWTQMGLSDLDKLFLR 643


>gi|259417261|ref|ZP_05741180.1| DNA mismatch repair protein [Silicibacter sp. TrichCH4B]
 gi|259346167|gb|EEW57981.1| DNA mismatch repair protein [Silicibacter sp. TrichCH4B]
          Length = 643

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 260/620 (41%), Positives = 384/620 (61%), Gaps = 29/620 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++ DNG G
Sbjct: 24  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGATRITVEIADGGKTLIRVIDNGCG 83

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT E++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR    +  AQI
Sbjct: 84  MTPEDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAEGYD-AAQI 142

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G  +  V+P A+  GTIVE+RDLFF  PARL F+++++ E+  I+D ++R+A+A P 
Sbjct: 143 RVAGGHLELVKPAALRQGTIVELRDLFFATPARLKFMRTDRAESQAISDTVKRLAMAEPA 202

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R        +G+  +    R++ VIG +F  NA++++     I L 
Sbjct: 203 VGFTLRDVSGGGEGRVTFRADPMSGDLFDALHGRLAHVIGREFAENALKIDATREGIRLY 262

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L ++ DP  
Sbjct: 263 GYAALPTYSRGAAVTQFLFVNTRPVKDKMLTGALRAAYMDFLSRDRHPAAALFIDCDPTL 322

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ S++ A+ + G   SS ++   + +   +    T 
Sbjct: 323 VDVNVHPAKSEVRFRDPGLARGLIVSSLRHALAEAGHRASSTVAGATLGAMRPEQPTATG 382

Query: 355 LPK-YATSLTNTQEKLFLQENRLSTND----------------LLPSDDPTYSEDNDPVE 397
            P+ Y     +   +      +                        S   +     D   
Sbjct: 383 APRVYQMDRPSPGARNSSYAAQAPGQPPAPSYPAPPSAEPAGFAEFSGAYSGRLVEDAAV 442

Query: 398 ESEAT---HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
           E EA       LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK++       + +
Sbjct: 443 EPEAHPVEDLPLGAARGQVHENYIIAQTRDGMVIVDQHAAHERLVYEKLKHQMAENGVAT 502

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL PEI++L +G+CA +++  +DL + G+  E FG +A+A+RE PAIL + N   ++R
Sbjct: 503 QGLLIPEIVELSDGDCARLLDVADDLAKFGLGIEAFGGSAVAVRETPAILGEVNAEAMIR 562

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           DI+DE+ D   +  +Q R+E IL+ +AC+GSIRSGR+M+  EMN LLREME  P+S QCN
Sbjct: 563 DILDELADQGESQLVQARLEAILSRVACHGSIRSGRRMRGEEMNALLREMEATPHSGQCN 622

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+++LKL+DIE+LFGR
Sbjct: 623 HGRPTYVELKLADIERLFGR 642


>gi|330873787|gb|EGH07936.1| DNA mismatch repair protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965979|gb|EGH66239.1| DNA mismatch repair protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 647

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/624 (35%), Positives = 348/624 (55%), Gaps = 31/624 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDIDVEQAGIKLLKVRDDGS 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  + +  +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMDARVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLHEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S       ++      +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAAEPRLTGPDAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQE--------------NRLSTNDLLPSDDPTYSED------ 392
             +      L   Q + F +                R +T   +      Y E       
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAGSGSGSGYQYQYSPRPTTGVPVAEAQSAYREFFAPLPG 441

Query: 393 --NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                + ES +    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    + 
Sbjct: 442 TTPSALPESPSDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANE 501

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +    
Sbjct: 502 GLSGQPLLVPESIAVSQREADCAEEHITTFQRLGFELQRLGPETLAIRQIPALLKQAEAN 561

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S
Sbjct: 562 RLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERS 621

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+ ++ LSD++KLF R
Sbjct: 622 GQCNHGRPTWTQMGLSDLDKLFLR 645


>gi|330807229|ref|YP_004351691.1| DNA mismatch repair protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375337|gb|AEA66687.1| DNA mismatch repair protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 637

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 218/625 (34%), Positives = 342/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 11  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGAKRIDVDVEQGGVKLLRVRDDGG 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +VS LTL SR        
Sbjct: 71  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVSRLTLTSRTRDAEQAW 130

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++S  +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+R+A+A
Sbjct: 131 QVETEGRDMASRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRLALA 190

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+  V G  F+  A+ +  + N + L G+ G
Sbjct: 191 RFDVAFHLRHNGKTILSLHEAHDDAARARRVGAVCGAGFLEQALPIEVERNGLHLWGWVG 250

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 251 LPTFSRSQADLQYFYVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAVVDVN 310

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------DNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+              +            +  P+
Sbjct: 311 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPEDQLAAPAAVGGMVRPTGLEAGEFGPQ 370

Query: 353 THLPKYATSLTNTQEKL---------------FLQENRLSTNDLLPSDDPTYSEDNDPVE 397
             +   A +L    +                 +    R  +N         Y E   P+ 
Sbjct: 371 GEMRLAANALLEQPQPQPSYNTAGSGAGSGYQYQYTPRPQSNVPAAEAQAAYREFFKPLP 430

Query: 398 ES--------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           E+        +     LG A AQ+   YI+S+   GLV+VD HAAHER+++E+++    S
Sbjct: 431 EAGAAAMPDGQGDIPPLGYALAQLKGIYILSENAQGLVLVDMHAAHERIMYERLKIAMAS 490

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 491 EGLSGQPLLVPESLAVSQREADCAEEHVAWFQRLGFELQRLGPETLAIRQIPALLKQAEA 550

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 551 NRLVSDVLADLMEYGTSDRIQAHLNELLGTMACHGAIRANRRLALPEMNGLLRDMENTER 610

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +L L D++KLF R
Sbjct: 611 SGQCNHGRPTWTQLGLDDLDKLFLR 635


>gi|260429288|ref|ZP_05783265.1| DNA mismatch repair protein [Citreicella sp. SE45]
 gi|260419911|gb|EEX13164.1| DNA mismatch repair protein [Citreicella sp. SE45]
          Length = 627

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/612 (41%), Positives = 387/612 (63%), Gaps = 21/612 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN++DA + RV   IA GGK+  ++TD+G G
Sbjct: 16  IRQLDESAINRIAAGEVVERPASAVKELVENAIDAGARRVAIEIADGGKTLIRVTDDGCG 75

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M ++E+P+A+ RH TSKI   D  +IH+FGFRGEALPS+GAV  LT+ SR      GA+I
Sbjct: 76  MRADELPLALSRHATSKIDGSDLLDIHSFGFRGEALPSLGAVGRLTIQSRAAGEE-GAEI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           +++G +    +P A+N GT+V +RDLF+  PARL FL++++ E   I++VI+R+A+A P 
Sbjct: 135 SVAGGQTGGAKPCALNGGTVVTLRDLFYATPARLKFLRTDRAEMQAISEVIKRLAMAEPS 194

Query: 182 VSFTFS--TIKSNRYKMNFQSTNGNFPERIS----QVIGEDFINNAVELNEKSNEITLQG 235
           V FT    +   +R        +G+  + +     QV+G +F +NA+ ++ +     L G
Sbjct: 195 VGFTLRDVSDGKDRVTFRADPCSGDLFDALRGRMGQVMGAEFTDNALSIDAEREGFRLTG 254

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
              +PT++RG++   ++F+NGR VQD+ +   +R AYA+ +   R+P V L ++ DP +V
Sbjct: 255 LAALPTYSRGSSVAQHLFVNGRPVQDRLLHGALRGAYADFLSRERHPAVALFVDCDPHKV 314

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAKS +RFR+P I+R  I+ +++ A+ + G   S+ ++   + +   +  P    
Sbjct: 315 DVNVHPAKSEVRFRDPGIVRGLIVSALRHALAEAGHRASTTVAGATLGAMRPEPQPAAAP 374

Query: 356 PKYAT-------------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
             Y               +     +       + ++     S D +   D     E  A 
Sbjct: 375 RVYQMDRPSQGALSSAWRAQAPAPQPYTPPAPQPTSGFAEFSRDYSGRVDVVEEPEQPAE 434

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
              LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK+++      + +Q LL PEI
Sbjct: 435 ALPLGAARGQVHENYIIAQTADGVVIVDQHAAHERLVYEKLKRQMAERGVPAQALLIPEI 494

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++    + + ++   ++L R+G+  E FG  A+A+RE PAIL + N   LL DI+DE+ D
Sbjct: 495 VEFSADDLSRLLSVADELSRMGLTVEPFGGGAVAVRETPAILGEVNAKALLNDILDELAD 554

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             ++  +Q++IE IL+ +AC+GSIRSGR+M++ EMN LLREME  P+S QCNHGRPT+++
Sbjct: 555 YGSSQLVQEKIEAILSRVACHGSIRSGRRMRAEEMNALLREMEATPHSGQCNHGRPTYVE 614

Query: 583 LKLSDIEKLFGR 594
           LKLSDIE+LFGR
Sbjct: 615 LKLSDIERLFGR 626


>gi|213967922|ref|ZP_03396068.1| DNA mismatch repair protein MutL [Pseudomonas syringae pv. tomato
           T1]
 gi|301384442|ref|ZP_07232860.1| DNA mismatch repair protein [Pseudomonas syringae pv. tomato Max13]
 gi|302064109|ref|ZP_07255650.1| DNA mismatch repair protein [Pseudomonas syringae pv. tomato K40]
 gi|302132270|ref|ZP_07258260.1| DNA mismatch repair protein [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213927265|gb|EEB60814.1| DNA mismatch repair protein MutL [Pseudomonas syringae pv. tomato
           T1]
          Length = 645

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/622 (35%), Positives = 347/622 (55%), Gaps = 29/622 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDIDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  + +  +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMDARVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLHEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S       +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAAEPRPTGPDAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQE------------NRLSTNDLLPSDDPTYSED-------- 392
             +      L   Q + F +              R +T   +      Y E         
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAGGGSGSGYQYSPRPTTGVPVAEAQSAYREFFAPLPGTT 441

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
              + ES +    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +  +
Sbjct: 442 PSALPESPSDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANEGL 501

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
           + Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +    +L
Sbjct: 502 SGQPLLVPESIAVSQREADCAEEHITTFQRLGFELQRLGPETLAIRQIPALLKQAEANRL 561

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S Q
Sbjct: 562 VSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERSGQ 621

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+ ++ LSD++KLF R
Sbjct: 622 CNHGRPTWTQMGLSDLDKLFLR 643


>gi|330960091|gb|EGH60351.1| DNA mismatch repair protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 647

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/624 (35%), Positives = 349/624 (55%), Gaps = 31/624 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL++NSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLKNSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     RIS + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTAKARRISAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S    +  +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAVEPRPTGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQE--------------NRLSTNDLLPSDDPTYSEDNDPVEE 398
             +      L   Q + F +                R +T   +      Y E   P+  
Sbjct: 382 GEMRLANNVLEQPQGEAFARPAGGGAGSGYQYQYSPRPTTGVPVAEAQSAYREFFAPLPS 441

Query: 399 --------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                   SE+    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    + 
Sbjct: 442 AAPSSLPGSESDIPPLGYALAQLKGIYILAENAQGLVLVDMHAAHERIMYERLKIAMANE 501

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +    
Sbjct: 502 GLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEAN 561

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S
Sbjct: 562 RLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNALLRDMENTERS 621

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+ ++ LSD++KLF R
Sbjct: 622 GQCNHGRPTWTQMGLSDLDKLFLR 645


>gi|254466092|ref|ZP_05079503.1| DNA mismatch repair protein MutL [Rhodobacterales bacterium Y4I]
 gi|206687000|gb|EDZ47482.1| DNA mismatch repair protein MutL [Rhodobacterales bacterium Y4I]
          Length = 647

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 256/628 (40%), Positives = 385/628 (61%), Gaps = 37/628 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++TD+G G
Sbjct: 20  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGATRITVEIADGGKTLIRVTDDGCG 79

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR   +   AQI
Sbjct: 80  MTPDDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAAGHE-AAQI 138

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG K+  V+P A+  GT+VE+RDLFF  PARL F+++++ E   I+D ++R+A+A P 
Sbjct: 139 RVSGGKLEPVKPAALRAGTVVELRDLFFATPARLKFMRTDRAEAQAISDTVKRLAMAEPS 198

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R        +G+  +    R++ V+G +F  NA++++     I L 
Sbjct: 199 VGFTLRDVSGGGEGRVTFRADPLSGDLFDALHGRLASVLGREFAENALKIDATREGIRLY 258

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L ++ DP+ 
Sbjct: 259 GYAALPTYSRGAAVAQFLFVNTRPVKDKMLTGALRAAYFDFLSRDRHPAAALFVDCDPQL 318

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ S++ A+ + G   S+ ++   + +   +    + 
Sbjct: 319 VDVNVHPAKSEVRFRDPGLARGLIVSSLRHALAEAGHRASTTVAGATLGAMKPEQPTASG 378

Query: 355 LPK----------------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND---- 394
            P+                 A S    Q   +         +L        +E  +    
Sbjct: 379 APRIYQMDRPSYGARSLSYAAQSPGQPQAPSYDAPPSPGFAELAGVYSGRVTEVAEAPTA 438

Query: 395 --------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                         A    LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK+++ 
Sbjct: 439 PGRPSVPPEASAPGAEQLPLGAARGQVHENYIIAQTADGMVIVDQHAAHERLVYEKLKRQ 498

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
                + +Q LL PEI++L + +CA ++   ++L + G+  E FG NAIA+RE PAIL +
Sbjct: 499 MAENGVAAQALLIPEIVELSDNDCACLLGVADELAKFGLGIEAFGGNAIAVRETPAILGE 558

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            N   +++DI+DE+ D   +  +Q +IE IL+ +AC+GSIRSGR+M+  EMN LLREME 
Sbjct: 559 VNAKAMIKDILDELSDQGESQLVQAKIEAILSRVACHGSIRSGRRMRGEEMNALLREMEA 618

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 619 TPHSGQCNHGRPTYVELKLADIERLFGR 646


>gi|237798277|ref|ZP_04586738.1| DNA mismatch repair protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021129|gb|EGI01186.1| DNA mismatch repair protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 647

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 219/624 (35%), Positives = 347/624 (55%), Gaps = 31/624 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDIDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S       K       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQVGGSVPVAAEPKPTGPDAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQE--------------NRLSTNDLLPSDDPTYSED------ 392
             +      L   Q + F +                R ++   +      Y E       
Sbjct: 382 GEMRLANNVLEQPQGEAFARPAGGGSGSGYQYQYSPRPASALPVAEAQSAYREFFAPLPS 441

Query: 393 --NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                + ES +    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    + 
Sbjct: 442 AAPSALPESPSDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANE 501

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +    
Sbjct: 502 GLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEAN 561

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S
Sbjct: 562 RLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERS 621

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+ ++ LSD++KLF R
Sbjct: 622 GQCNHGRPTWTQMGLSDLDKLFLR 645


>gi|222085025|ref|YP_002543554.1| DNA mismatch repair protein [Agrobacterium radiobacter K84]
 gi|254766153|sp|B9JA11|MUTL_AGRRK RecName: Full=DNA mismatch repair protein mutL
 gi|221722473|gb|ACM25629.1| DNA mismatch repair protein [Agrobacterium radiobacter K84]
          Length = 606

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 297/607 (48%), Positives = 415/607 (68%), Gaps = 15/607 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  +++DNG
Sbjct: 1   MTIKQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM   ++ +A++RHCTSKISD   +I T GFRGEALPSIG+V+ L++ SR   +  GA+
Sbjct: 61  SGMEQADLELAIKRHCTSKISDTLDDIRTLGFRGEALPSIGSVARLSIASRRVGSAGGAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++G K+  +RP A NPGTIVEVRDLFF  PARL FLK+E+ E   IT+V++RMAIA+P
Sbjct: 121 IAVAGGKVLHLRPAAANPGTIVEVRDLFFATPARLKFLKTEKAEAAAITEVVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V F  S   S+R  + F +T  +   R++QV+G+DF +NA+EL+ +  ++ L G+ G+P
Sbjct: 181 QVRFVLS--GSDRSTLEFPATGDDRLARMAQVLGKDFKDNAIELDAEREDVRLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GRYP+ VL + +DP  +DVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRYPIAVLSITLDPALLDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++A+ ++G   ++  +  M+ +F     P       + 
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIREALAREGDRAATTGADGMLRAFTSGFQPGWRPSAPSA 358

Query: 361 SLTNTQEK------------LFLQENRLSTNDLLPSDDPTYSEDN-DPVEESEATHYQLG 407
             T                  F +  + + + L        S    +P +  E   + LG
Sbjct: 359 PWTPEASPSRPYQPAVTNGYSFRERPQAAFDGLTMPTARAESTPFVEPTQSEEPARFPLG 418

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A AQ+H+NYI++QT DGLVIVDQHAAHERL+FE+MR+  +S +++SQ LL PEI+DL E
Sbjct: 419 AARAQLHENYIVAQTDDGLVIVDQHAAHERLVFEEMRKALHSKRLSSQVLLIPEIVDLPE 478

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +C  +M   ++L  LG+  ERFGP AIA+RE PA+L + +   L+R + DEI +  T  
Sbjct: 479 EDCDRLMVFADELGELGLAIERFGPGAIAVRETPAMLGEVDAQGLIRQLADEIAEWDTAS 538

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L  ++E + ATMAC+GS+RSGR+++  EMN LLR+ME  P S QCNHGRPT+I+LKLSD
Sbjct: 539 GLAAKLEYVAATMACHGSVRSGRRLRPEEMNALLRQMEATPGSGQCNHGRPTYIELKLSD 598

Query: 588 IEKLFGR 594
           IE+LFGR
Sbjct: 599 IERLFGR 605


>gi|307825900|ref|ZP_07656115.1| DNA mismatch repair protein MutL [Methylobacter tundripaludum SV96]
 gi|307733019|gb|EFO03881.1| DNA mismatch repair protein MutL [Methylobacter tundripaludum SV96]
          Length = 614

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 202/612 (33%), Positives = 344/612 (56%), Gaps = 18/612 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I  L  +++NQIAAGE++ERPS  +KEL+EN  DA +S+V   I  GG    +I DNG
Sbjct: 1   MRIHSLPTQLVNQIAAGEVVERPSSVVKELVENCFDAGASQVSIEIEQGGARLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+A+ RH TSKI+   D   + + GFRGEALPSI +VS LTL+SR    +  
Sbjct: 61  CGIVKEDLPLALSRHATSKIASLKDLEQVVSMGFRGEALPSISSVSRLTLISRISDADCA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            ++     E+  + +P     GT ++VRDLF+  PAR  FLK+E+ E   I  +I+RMA+
Sbjct: 121 WRVNADGTEQDFNPQPDPHPQGTTIDVRDLFYNTPARRKFLKTEKTEFAHIETLIKRMAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   + F  S  +   + +    T     +RI+ + G  FI N+++++  ++ + L G+ 
Sbjct: 181 SRFDIGFILSHNQKEIFNLKPAITESEQEQRIAGICGSAFIENSIKIDFAASGLQLTGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R   +  + ++NGR V+DK +   ++ AY + +  GR+PV VL L +DP  VDV
Sbjct: 241 GLPTFSRSQQDMQFFYVNGRLVRDKLVSHAVKQAYQDVLFHGRHPVFVLYLTLDPALVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI---------------STSSVLSKKMI 342
           N HPAK  +RFR   ++ +F+  ++ +++                    + + + +K   
Sbjct: 301 NAHPAKLEVRFREGRLVHDFLFSALHRSLADLRPGRNLMQQVEVEALPQTPAVLDAKPNN 360

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            ++  D+  +   P +      +          L   + + +    Y +     + ++  
Sbjct: 361 VAWLNDSVTQQSKPNFDNKTAYSSRSPQQASLPLHVEEAMQAYASLYPKPEPVAQSAQPE 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
              LG A A +H  YI+S+T +G+++VD HAAHER+ +E+++Q + +  + +Q LL P  
Sbjct: 421 ARPLGHAIAHLHNIYILSETPNGIILVDAHAAHERVTYERLKQQYQNGAVPNQPLLLPIK 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           I +   E  L  +  E  + LG +  R G   I +R IP +L   ++  L+RD++ ++I+
Sbjct: 481 IKVSAAEADLAEQEHEFFNTLGFEINRSGLETIVLRSIPVLLGNTDMETLVRDVLADMIE 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              +  +Q++   ILAT+AC+G++R+ R++   EMN LLR+ME+     QCNHGRPT+++
Sbjct: 541 HGMSQRIQEKSNEILATVACHGAVRAHRRLTIDEMNALLRDMEQTERIGQCNHGRPTWVE 600

Query: 583 LKLSDIEKLFGR 594
           L  +D++K F R
Sbjct: 601 LSTNDLDKFFLR 612


>gi|285017885|ref|YP_003375596.1| DNA mismatch repair protein mutl [Xanthomonas albilineans GPE PC73]
 gi|283473103|emb|CBA15608.1| probable dna mismatch repair protein mutl [Xanthomonas albilineans]
          Length = 623

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 212/623 (34%), Positives = 348/623 (55%), Gaps = 31/623 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA + RV+  +  GG    +I D+G
Sbjct: 1   MSIRQLPEILINQIAAGEVVERPASVVKELVENALDAGARRVDVDLEEGGVRLIRIRDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ +EE+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR   +  G
Sbjct: 61  SGIPAEELPLAVSRHATSKIASLDDLETVGTLGFRGEALPSIASVSRFTLASRRADDAHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + + G K+ +V+P A +PGT VEVR+LF+ +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 AMLQVEGGKVGAVQPHAQSPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +GEDF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGAGLRLHGWIA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R +A+Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASADQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPSRVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLPK 357
           VHPAK  +RFR+  +I +F+ +++Q  + +    +  S  +   + +     +     P 
Sbjct: 299 VHPAKHEVRFRDARLIHDFVYRTLQDTLAQTRAGSLPSTAADAPVQTLPTHGSGAGAWPP 358

Query: 358 YATSLTNTQEKLFLQENRLSTN---------------------DLLPSDDPTYSEDND-- 394
              S+  +  K    + R + +                     D   +     S   D  
Sbjct: 359 PRASVGGSSGKGEGAQWRSAQSPLGLRVQEAPAAYAALYAASADSGSTAAHLPSPPQDAA 418

Query: 395 ---PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              P    ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +   
Sbjct: 419 GGLPPTAPDSGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKSAHDGIG 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + + E +        + L  LG +  R GP ++ +R IPA+L++     
Sbjct: 479 LHTQPLLVPITLAVGERDADTAEREAQTLAALGFEVTRSGPQSLHVRSIPALLAQAEPEA 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    S 
Sbjct: 539 LLRDVLTDLREHGHSGRVAGARDALLSTMACHGAVRANRRLTLPEMNALLRDMEATERSG 598

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+ +  L++I++ F R
Sbjct: 599 QCNHGRPTWARFTLAEIDRWFLR 621


>gi|331014608|gb|EGH94664.1| DNA mismatch repair protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 647

 Score =  561 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 220/624 (35%), Positives = 347/624 (55%), Gaps = 31/624 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDIDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  + +  +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMDARVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLHEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S       +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAAEPRPTGPDAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQE--------------NRLSTNDLLPSDDPTYSED------ 392
             +      L   Q + F +                R +T   +      Y E       
Sbjct: 382 GEMRLANNVLEQPQGEPFARPAGGGSGSGYQYQYSPRPTTGVPVAEAQSAYREFFAPLPG 441

Query: 393 --NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                + ES +    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    + 
Sbjct: 442 TTPSALPESPSDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANE 501

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +    
Sbjct: 502 GLSGQPLLVPESIAVSQREADCAEEHITTFQRLGFELQRLGPETLAIRQIPALLKQAEAN 561

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S
Sbjct: 562 RLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERS 621

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+ ++ LSD++KLF R
Sbjct: 622 GQCNHGRPTWTQMGLSDLDKLFLR 645


>gi|170723845|ref|YP_001751533.1| DNA mismatch repair protein [Pseudomonas putida W619]
 gi|229486326|sp|B1JAD6|MUTL_PSEPW RecName: Full=DNA mismatch repair protein mutL
 gi|169761848|gb|ACA75164.1| DNA mismatch repair protein MutL [Pseudomonas putida W619]
          Length = 633

 Score =  561 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 209/626 (33%), Positives = 340/626 (54%), Gaps = 33/626 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS ++ NQIAAGE++ERP+   KEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 6   RIQLLSPRLTNQIAAGEVVERPASVAKELLENSLDSGARRIDVEVEQGGVKLLRVRDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI +  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 66  GISADDLPLALARHATSKIRELEDLEGVLSLGFRGEALASISSVARLTLTSRTASASEAW 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  ++   +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VIRR+A+A
Sbjct: 126 QVETEGRDMTPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIRRLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F       +   ++          R+  + G  F+  A+ ++ + N + L G+ G
Sbjct: 186 RFDVAFHLRHNGKSILSLHEAHDETARARRVGAICGGGFMEQALPIDVERNGLRLWGWVG 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE++P  VDVN
Sbjct: 246 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFLELEPNGVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------------------------NKKGISTS 334
           VHP K  +RFR    + +F+  ++ +A+                         + G    
Sbjct: 306 VHPTKHEVRFREGRSVHDFLYGTLHRALADVRPEDHLASAPAAAAEITRPTGQQAGEFGP 365

Query: 335 SVLSKKMISSFHQDNAPKTHLPK------YATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
               +       Q   P+  +        Y    T    +        +           
Sbjct: 366 QGEMRLASPVLEQPQVPQHSISNGGSGAGYQYQYTPRPSQPLPAAEAQAVYREFYKPLND 425

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            +     + +S+     LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    
Sbjct: 426 DAAGPATLPQSQGDIPPLGYALAQLKGIYILAENAAGLVLVDMHAAHERIMYERLKVAMA 485

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           S  ++ Q LL PE + L + E     EH +   RLG + +R GP  +AIR+IPA+L +  
Sbjct: 486 SEGLSGQPLLVPESLALSQREADCAEEHAQWFQRLGFELQRLGPETLAIRQIPALLKQAE 545

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             +L++D++ ++++  T+  +Q  +  +L TMAC+G++R+ R++   EMN LLR+ME   
Sbjct: 546 ANRLVQDVLADLMEYGTSDRIQAHLNELLGTMACHGAVRANRRLAIPEMNALLRDMENTE 605

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S QCNHGRPT+ ++ L D++KLF R
Sbjct: 606 RSGQCNHGRPTWTQMGLDDLDKLFLR 631


>gi|311695392|gb|ADP98265.1| LOW QUALITY PROTEIN: DNA mismatch repair protein mutL [marine
           bacterium HP15]
          Length = 630

 Score =  561 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 210/632 (33%), Positives = 346/632 (54%), Gaps = 48/632 (7%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           LS ++ NQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    ++ D+G G+  
Sbjct: 2   LSPRLANQIAAGEVVERPASVVKELVENALDAGANRVDVEVEQGGVKLIRVRDDGSGIEE 61

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           +++P+A+ RH TSKI+  DD   + + GFRGEAL SI +VS LTL SR       +++ +
Sbjct: 62  DDLPLALSRHATSKIASLDDLEAVASLGFRGEALASISSVSRLTLTSRTESQEAASRVEV 121

Query: 124 SGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
            G ++   + P A   GT VEVRDLFF  PAR  FL++E+ E N + + +RR A++    
Sbjct: 122 EGREMDARISPAAHPVGTTVEVRDLFFNTPARRKFLRTEKTEFNHVEECVRRQALSRFDA 181

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
            FT    +     +    +  +   RI  + G+ FI+NAV ++ ++  + L G+  +PTF
Sbjct: 182 GFTLRHNQRVVQSLRPAESALDRERRIGSLCGQQFIDNAVVIDAEATGLRLWGWVALPTF 241

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R  A+  Y F+NGR ++D+ +   +R AY + +   R+P  VL LE+DP  VDVNVHP 
Sbjct: 242 SRSQADLQYFFVNGRVIRDRLVAHAVRQAYRDVLYNNRHPAFVLYLEVDPATVDVNVHPT 301

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  +RFR+  ++ +FI +++ KA+    +         +  SF ++   +      AT  
Sbjct: 302 KHEVRFRDGRLVHDFIFRTLHKALA--DVRPDDHFRGAVAQSFGREAVTQGQEAVPATGA 359

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL---------------- 406
           +   E  +  +  +S+          +   + P +E  A+                    
Sbjct: 360 S--AEAGWNGQPSVSSYGYPGGSGAGFGGQSQPQQEWRASDQMAFYQSLNAGGGSDGQQA 417

Query: 407 ------------------------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                                   G A AQ+H  YI++Q   GL++VD HAAHER+ +E+
Sbjct: 418 MPVSDRAATPMPTPPADSDQEPPLGYAIAQLHGIYILAQGRAGLIVVDMHAAHERITYER 477

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
           M++      + SQ LL P  + + + +      H E+L +LG++ ER GP  +A+R++PA
Sbjct: 478 MKRALAEQDLKSQPLLVPLSLAVSQKKPPT-ESHGEELQKLGLQIERIGPETLAVRQVPA 536

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +L   +  QL+RD++ ++I+   +  ++     +L TMAC+GS+R+ R++   EMN LLR
Sbjct: 537 LLRGADTEQLVRDVLADLIEHGQSDRVEAVTHELLGTMACHGSVRANRQLTIPEMNSLLR 596

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +ME    S QCNHGRPT+  + +S+++KLF R
Sbjct: 597 DMEATERSGQCNHGRPTWTLVTMSELDKLFLR 628


>gi|294666460|ref|ZP_06731703.1| DNA mismatch repair protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603766|gb|EFF47174.1| DNA mismatch repair protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 625

 Score =  561 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 218/625 (34%), Positives = 343/625 (54%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+T +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGITPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +G+DF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGDDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------VLSKK 340
           VHPAK  +RFR   +I +F+ +++Q A+ +     +                        
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAQTRAGATPNSIGSDRVGDMGTTSGGMGSLAG 358

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDP--- 395
             +  H      ++      S T +Q  L L+  E R +   L      +  +       
Sbjct: 359 GGAPRHGGMPGGSNGTYGYASWTPSQAPLGLRVDEARAAYGALYAPPPSSAQQSAGMPNM 418

Query: 396 ------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++Q  +S
Sbjct: 419 VGTGLPATAEDSGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKQAHDS 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+    
Sbjct: 479 IGLHAQPLLVPMTLAVGEREADTAEREAETLATLGFEITRAGPQSLHVRSIPALLANAEP 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 539 EALLRDVLGDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 599 SGQCNHGRPTWARFTLSDIDRWFLR 623


>gi|294626021|ref|ZP_06704631.1| DNA mismatch repair protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599691|gb|EFF43818.1| DNA mismatch repair protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 625

 Score =  561 bits (1447), Expect = e-158,   Method: Composition-based stats.
 Identities = 218/625 (34%), Positives = 343/625 (54%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+T +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGITPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +G+DF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGDDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------VLSKK 340
           VHPAK  +RFR   +I +F+ +++Q A+ +     +                        
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAQTRAGATPNSIGSDRVGDMGTTSGGMGSLAG 358

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDP--- 395
             +  H      ++      S T +Q  L L+  E R +   L      +  +       
Sbjct: 359 GGAPSHGGMPGGSNGTYGYASWTPSQTPLGLRVDEARAAYGALYAPPPSSAQQSAGMPNM 418

Query: 396 ------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++Q  +S
Sbjct: 419 AGTGLPATAEDSGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKQAHDS 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+    
Sbjct: 479 IGLHAQPLLVPMTLAVGEREADTAEREAETLATLGFEITRAGPQSLHVRSIPALLANAEP 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 539 EALLRDVLGDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 599 SGQCNHGRPTWARFTLSDIDRWFLR 623


>gi|159184423|ref|NP_353724.2| DNA mismatch repair protein [Agrobacterium tumefaciens str. C58]
 gi|25090766|sp|Q8UHI3|MUTL_AGRT5 RecName: Full=DNA mismatch repair protein mutL
 gi|159139736|gb|AAK86509.2| DNA mismatch repair protein MutL [Agrobacterium tumefaciens str.
           C58]
          Length = 606

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 299/607 (49%), Positives = 413/607 (68%), Gaps = 15/607 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERPS A KEL+EN++DA ++R+E   AGGGK   +ITDNG
Sbjct: 1   MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM+  ++ +AV+RHCTSKIS    +I T GFRGEALPSIG+V+ LT+ SR      G+ 
Sbjct: 61  SGMSPADLELAVRRHCTSKISTTLDDIRTLGFRGEALPSIGSVAKLTITSRQQGAEQGSV 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+++G K+S VRP A N GTIVEVRDLFF  PARL FLK+E+ E   IT+V++RMAIA+P
Sbjct: 121 ISVTGGKVSDVRPAASNAGTIVEVRDLFFATPARLKFLKTERAEAAAITEVVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F  S   ++R  +   ST  +   R++Q++G +F +NA+E++    ++TL G+ G+P
Sbjct: 181 HIRFVLS--GTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN++  YVF+NGR VQDK +LS IR AYAET+P GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSSHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSITLDPAFVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P +IR  I+ +I++A+ + G   ++  + +M+++F    +P    P  + 
Sbjct: 299 PAKSDVRFRDPGLIRGLIVGAIRQALTRDGDRAATTGASQMMNAFRPGYSPSGLRPSPSA 358

Query: 361 SLTNTQEKL----------FLQENRLSTNDLLP---SDDPTYSEDNDPVEESEATHYQLG 407
           + +                F +  +   +D+       +P  + +       E   Y LG
Sbjct: 359 TWSAATSPSRPLAVSGDMQFAEAAQSRFSDITMPTARAEPREAYEASQSPSPEPVLYPLG 418

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A AQ+H+NYII+QT +GLVIVDQHAAHERL+FE+MR   +S +  SQ LL PEIIDL E
Sbjct: 419 AARAQLHENYIIAQTENGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPE 478

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +C  +M+H      LG+  ERFGP AIA+RE PA+L + N+  L+R + DEI +     
Sbjct: 479 EDCDRLMDHAAGFDALGLVIERFGPGAIAVRETPAMLGEVNVQGLVRQLADEIAEWDAAS 538

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
           TL +++E + ATMAC+GS+RSGR+M+  EMN LLR+ME  P S QCNHGRPT+I+LKLSD
Sbjct: 539 TLANKLEYVAATMACHGSVRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSD 598

Query: 588 IEKLFGR 594
           IE+LFGR
Sbjct: 599 IERLFGR 605


>gi|163794888|ref|ZP_02188857.1| DNA mismatch repair protein [alpha proteobacterium BAL199]
 gi|159179707|gb|EDP64234.1| DNA mismatch repair protein [alpha proteobacterium BAL199]
          Length = 620

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 236/607 (38%), Positives = 372/607 (61%), Gaps = 18/607 (2%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L E ++N+IAAGE++ERP+ A+KEL+ENSLDA + RV+ V+  GG++  Q++D+G G+
Sbjct: 15  RRLPETLVNRIAAGEVVERPASALKELVENSLDAGARRVDVVLRDGGRTLIQVSDDGHGL 74

Query: 64  TSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
             + + +AV+RH TSK+ DD  ++I T GFRGEALPSIGAVS L++ SR        +I 
Sbjct: 75  DPDTLSLAVERHATSKLPDDDLTHISTLGFRGEALPSIGAVSRLSITSRAAGAPAAWRIR 134

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G  + +  P A+  GT VE+RDLF+  PARL FLK  + E +   ++++R+A+A P V
Sbjct: 135 VEGGAVGAPEPAALTAGTRVEIRDLFYATPARLKFLKIPRTEQSHALEILQRLAMAAPTV 194

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            FT S     R  +N ++  G+  E    R+  V+G DF  +A+ ++ +     L GY G
Sbjct: 195 GFTLS--DGTRTLLNLEAAQGDLFEVRLARLGAVLGRDFAADALPIDAERQGYRLTGYAG 252

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT +R  +   Y+F+NGR V+D+ +L  +R AY + +   R+P++ L LE+   +VDVN
Sbjct: 253 LPTLHRRTSAHQYLFVNGRPVRDRLLLGAVRGAYMDFVASDRHPMLALFLELPAEEVDVN 312

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD---NAPKTHL 355
           VHPAK+ +RFR+  ++R  I+ +++ A+ + G   S+ +    + +F  D          
Sbjct: 313 VHPAKTEVRFRDAGLVRGLIVGALKHALAEAGHRASASVGAATLGAFRPDGLRAHTGHAA 372

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDL--------LPSDDPTYSEDNDPVEESEATHYQLG 407
           P + T+         L E + +            L       +   +   +  A  + LG
Sbjct: 373 PAWNTARWTPPPSEGLAEAQAAWQAPSTDRVGHTLDFGAAPAARVENAPADPVAERHPLG 432

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A AQ+H  YI++QT DGLVIVDQHAAHERL++E+M+       + SQ LL PE+++L E
Sbjct: 433 AARAQVHGTYIVAQTEDGLVIVDQHAAHERLVYERMKDALAVGGVKSQALLLPEVVELEE 492

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
                +++  ++   LG+  E FG  A+ +RE+PA+L K +   L+RD+ D++ +    +
Sbjct: 493 AAVDRLVQRADEFAELGLVLEAFGQGAVVVREVPALLGKTDTAALIRDLADDLAEVGDAH 552

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L+DR+ ++  TMAC+GS+R+GR++   EMN LLR+ME  P+S QCNHGRPT+++LKL+D
Sbjct: 553 ALKDRLADVCGTMACHGSVRAGRRLSGDEMNALLRQMEATPHSGQCNHGRPTYVELKLTD 612

Query: 588 IEKLFGR 594
           IE+LFGR
Sbjct: 613 IERLFGR 619


>gi|88798917|ref|ZP_01114499.1| DNA mismatch repair protein [Reinekea sp. MED297]
 gi|88778397|gb|EAR09590.1| DNA mismatch repair protein [Reinekea sp. MED297]
          Length = 632

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 210/618 (33%), Positives = 339/618 (54%), Gaps = 26/618 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++ NQIAAGE++ERP+  +KELIENSLDA ++R+E  I  GG    ++ DNG G
Sbjct: 13  IAVLSPRLANQIAAGEVVERPASVVKELIENSLDAGATRIEIEIEQGGVKLIRVRDNGRG 72

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSK+   D+   + + GFRGEAL S+ +VS LTL S+P   +   Q
Sbjct: 73  IPQDDLALALARHATSKVYSLDELEALGSLGFRGEALASVASVSRLTLTSKPANQSEAWQ 132

Query: 121 IAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   G  +++   P A   GT VEVRDLFF  PAR  FL++E+ E N + +V++R A++ 
Sbjct: 133 VQSHGRDMATELAPAAHTDGTTVEVRDLFFNTPARRKFLRTEKTEFNHLEEVVKRQALSR 192

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+F+        + +    T      RI+Q++  +F+ NA+ +  +   + + G+ G+
Sbjct: 193 FDVAFSLRHNNRTIHSLRAAHTQAEQQRRIAQLLKPEFMTNALVVETERAGLRMTGWVGL 252

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF+R   +  Y F+NGR V+DK I   ++ AY + +  GR+P  VL LE+D   VDVNV
Sbjct: 253 PTFSRSMPDMQYFFVNGRVVKDKVIGHAVKQAYRDVLYHGRHPCFVLFLELDSSGVDVNV 312

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQ---------- 347
           HP K  +RFR+  ++ +F+   + +A+          S     M +              
Sbjct: 313 HPTKHEVRFRDQRLVHDFLFSQLHRALADVRPENDVGSSFDNPMTAPPQPRVSGLEAGEF 372

Query: 348 ------DNAPKTHLPKYATSLTNTQ-----EKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                 D  P    P    S + T      E++   +          + +  ++      
Sbjct: 373 RGQNHLDMRPSGSGPMVDASASGTSSLGVSEQVSFYQQLQQPGSEAGAANAGFTPQPQLP 432

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           +        LG A AQ+H  YI+S++  GL+IVD HAAHER+ +E+M+Q ++   + +Q 
Sbjct: 433 QSETPDMPPLGFAVAQLHGIYILSESEQGLIIVDMHAAHERITYERMKQQYDHQGVQAQP 492

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P  + + E E     E    L + G++ +R GP  + +R++P  L + ++  L+R +
Sbjct: 493 LLVPLALSVSEKEADAAEEFSALLQQFGLELQRSGPEKMTVRQVPVYLQQADVEPLVRSV 552

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + ++I   T+  +Q     IL+TMAC+GS+R+ R++   EMN LLR+ME+   S QCNHG
Sbjct: 553 LADVIQHETSDAIQAHRNEILSTMACHGSVRANRRLTVPEMNALLRDMERTERSGQCNHG 612

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ +L  S+++KLF R
Sbjct: 613 RPTWTQLTQSELDKLFLR 630


>gi|58582355|ref|YP_201371.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624234|ref|YP_451606.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188576161|ref|YP_001913090.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|81311818|sp|Q5GZ85|MUTL_XANOR RecName: Full=DNA mismatch repair protein mutL
 gi|123739091|sp|Q2P295|MUTL_XANOM RecName: Full=DNA mismatch repair protein mutL
 gi|238691577|sp|B2SHP8|MUTL_XANOP RecName: Full=DNA mismatch repair protein mutL
 gi|58426949|gb|AAW75986.1| DNA mismatch repair protein MutL [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368174|dbj|BAE69332.1| DNA mismatch repair protein mutL [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188520613|gb|ACD58558.1| DNA mismatch repair protein MutL [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 625

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 342/625 (54%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEMLINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGIAPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +GEDF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI---------------- 342
           VHPAK  +RFR   +I +F+ +++Q A+       +                        
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGATPNSIGSDGAGYTGATAGEMGNIAS 358

Query: 343 --SSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVE- 397
              + H +   ++       + T +Q  L L+  E R + + L         +       
Sbjct: 359 GGPANHGNAPGRSGSAYSYANWTPSQTPLGLRVDEARAAYSALYAPPPRNAPQSTGMPSM 418

Query: 398 --------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+++E+++   +S
Sbjct: 419 AGTGLPATSEDSGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIVYERLKNAHDS 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        + L  LG +  R GP ++ +R IPA+L+    
Sbjct: 479 IGLHAQPLLVPMTLAVGEREADTAEREADTLATLGFEITRAGPQSLHVRSIPALLANAEP 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 539 EALLRDVLGDLREHGQSCRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 599 SGQCNHGRPTWARFTLSDIDRWFLR 623


>gi|323135584|ref|ZP_08070667.1| DNA mismatch repair protein MutL [Methylocystis sp. ATCC 49242]
 gi|322398675|gb|EFY01194.1| DNA mismatch repair protein MutL [Methylocystis sp. ATCC 49242]
          Length = 602

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 239/598 (39%), Positives = 362/598 (60%), Gaps = 5/598 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L   ++++IAAGE++ERP+ A+KEL+EN+LDA ++R++  I  GG+   ++ D+G
Sbjct: 5   MPVRRLDPILVDRIAAGEVVERPASAVKELVENALDAGATRIDVAIEEGGRKLIRVIDDG 64

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM   ++ +AV+RH TSKI D D ++I T GFRGEALPSI AV+ LT+ +R      G 
Sbjct: 65  CGMDENDLALAVERHATSKIPDGDLTHIATLGFRGEALPSIAAVADLTIDTRAQNAPHGF 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +       +   +   GT +E R LF   PARL FLK+E+ ET  + DV++R+A+A+
Sbjct: 125 SIRVEAGDRRGLTASSWPRGTRIEARALFAATPARLKFLKTERTETAAVVDVVKRLAMAH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V F FS      +       +      RI+QV+GE+F  NA+E++ +   + L G   
Sbjct: 185 PDVRFGFSADNGALFDYPACGDDAAGRARRIAQVLGEEFRANAIEIDAERAGVRLTGLAS 244

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT+NRGNA   YV++NGR V+DK     IR AY + +   R+PVV L +  DPR VDVN
Sbjct: 245 LPTYNRGNAQLQYVYVNGRPVRDKLFAGAIRAAYLDFLSPDRHPVVALFIGCDPRIVDVN 304

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RF +P ++R  ++ ++++A+ +K   ++    +  + +F + NA +   P  
Sbjct: 305 VHPAKAEVRFADPGLVRGLVVGALKQALAEKSHRSADTA-RAAVETFARANAARHDAPWR 363

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL--GIACAQIHQN 416
           A    N   +               + D      +  V E+ A       G A AQ+H+ 
Sbjct: 364 APPPANWDIRHSPHAPSGFAESPQAAFDVGAPAADARVHEAPAQDTDAPLGAARAQLHET 423

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YII+QT DGLVIVDQHAAHERL++EK+++    T +  Q LL P ++DL E     +   
Sbjct: 424 YIIAQTRDGLVIVDQHAAHERLVYEKLKRQREETGVARQMLLIPVVVDLDESRMNALAGA 483

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            ++L  LG+  E FGP A+ +RE P+IL + +  +L+ DI D + +      L  R++++
Sbjct: 484 FDELAALGLALEPFGPGAVLVREAPSILGEVDHRRLVEDIADLLAEDGDARGLSRRLDHV 543

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LAT AC+ S+R+GR++ + EMN LLREME  P + QCNHGRPT+++LKL+DIEKLFGR
Sbjct: 544 LATCACHHSVRAGRRLGAAEMNALLREMETTPGAGQCNHGRPTYVELKLADIEKLFGR 601


>gi|77456749|ref|YP_346254.1| DNA mismatch repair protein [Pseudomonas fluorescens Pf0-1]
 gi|77380752|gb|ABA72265.1| DNA mismatch repair protein [Pseudomonas fluorescens Pf0-1]
          Length = 635

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 345/625 (55%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +  GG    ++ D+G 
Sbjct: 9   RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGAKRIDVDVEQGGVKLLRVRDDGS 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++P+A+ RH TSKI   +D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 69  GISADDLPLALARHATSKIRNLEDLEQVMSLGFRGEALASISSVARLTLTSRTRDADQAW 128

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +   V+P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+R+A+A
Sbjct: 129 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKTEKTEFDHLQEVIKRLALA 188

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R++ + G  F+  A+ +  + N + L G+ G
Sbjct: 189 RFDVAFHLRHNGKTILSLHEAHDDAARARRVAAICGSGFLEQALPIEIERNGLHLWGWVG 248

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTFNR  A+  Y F+NGR V+DK +   +R AY + +  GR+P   L  E+DP  VDVN
Sbjct: 249 LPTFNRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFALFFEVDPAAVDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-------GISTSSVLSKKMISSFHQDNAP 351
           VHP K  +RFR+  ++ +F+  ++ +A+          G  T++++    + +       
Sbjct: 309 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPEDQLAGSVTTAIVRPTGLEAGEFGPQG 368

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL----- 406
           +  L   A       +  F   +  S             +   PV E++A + +      
Sbjct: 369 EMRLAANALLEQPQAQPAFNTASGASAGGAYQYQYTPRPQSTVPVAEAQAAYREFFAPLP 428

Query: 407 -----------------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                            G A AQ+   YI+S+   GLV+VD HAAHER+++E+++    S
Sbjct: 429 EANANALPAGQEDIPPLGYALAQLKGIYILSENAQGLVLVDMHAAHERIMYERLKIAMAS 488

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 489 EGLSGQPLLVPESLAVSQREADCAEEHAAWFQRLGFELQRLGPETLAIRQIPALLKQAEA 548

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 549 NRLVGDVLSDLMEYGTSDRIQAHLNELLGTMACHGAIRANRRLALPEMNGLLRDMENTER 608

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +L L D++KLF R
Sbjct: 609 SGQCNHGRPTWTQLGLDDLDKLFLR 633


>gi|21243139|ref|NP_642721.1| DNA mismatch repair protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|25090749|sp|Q8PJX2|MUTL_XANAC RecName: Full=DNA mismatch repair protein mutL
 gi|21108659|gb|AAM37257.1| DNA mismatch repair protein MutL [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 625

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 217/625 (34%), Positives = 342/625 (54%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+T +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGITPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +G+DF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGDDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+++ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRERSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------KKMISSFHQDNAPK 352
           VHPAK  +RFR   +I +F+ +++Q A+       +              +S        
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGATPNSIGGDGTGYTAATSGGMGGIAS 358

Query: 353 THLPKYA------------TSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDP--- 395
             +P                S T +Q  L L+  E R + + L      +  +       
Sbjct: 359 GGVPGNGGASIGSGGAYSYASWTPSQTPLGLRVDEARAAYSALYAPPPSSAQQSAGMPNM 418

Query: 396 ------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S
Sbjct: 419 AGTGLPATAQDSGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKHAHDS 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+    
Sbjct: 479 IGLHAQPLLVPMTLAVGEREADTAEREAETLATLGFEITRAGPQSLHVRSIPALLANAEP 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 539 EALLRDVLSDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 599 SGQCNHGRPTWARFTLSDIDRWFLR 623


>gi|325928077|ref|ZP_08189290.1| DNA mismatch repair protein MutL [Xanthomonas perforans 91-118]
 gi|325541575|gb|EGD13104.1| DNA mismatch repair protein MutL [Xanthomonas perforans 91-118]
          Length = 630

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 222/625 (35%), Positives = 350/625 (56%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 6   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 65

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 66  GGIAPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 125

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 126 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +G+DF   A+ ++     + L G+  
Sbjct: 186 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGDDFARQALRVDHSGAGLRLHGWVA 243

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 244 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 303

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISS------------ 344
           VHPAK  +RFR   +I +F+ +++Q A+   + G++ +S+ S                  
Sbjct: 304 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGVTPNSIGSDGAGDPGATAGGLGNIAG 363

Query: 345 ---FHQDNAPKTHLPKYA-TSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVE- 397
               +  NAP +    Y   S T +Q  L L+  E R + + L      +  +       
Sbjct: 364 SGVPNHGNAPGSSGSGYNYPSWTPSQTPLGLRVDEARAAYSALYAPPPSSAQQSAGMPSM 423

Query: 398 --------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S
Sbjct: 424 AGTGLPATAQDSGVPPLGYAVAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAHDS 483

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+    
Sbjct: 484 IGLHAQPLLVPMTLAVGEREADTAEREAETLATLGFEITRAGPQSLHVRSIPALLANAEP 543

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 544 EALLRDVLGDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 603

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 604 SGQCNHGRPTWARFTLSDIDRWFLR 628


>gi|86356494|ref|YP_468386.1| DNA mismatch repair protein [Rhizobium etli CFN 42]
 gi|123765850|sp|Q2KBX7|MUTL_RHIEC RecName: Full=DNA mismatch repair protein mutL
 gi|86280596|gb|ABC89659.1| DNA mismatch repair protein [Rhizobium etli CFN 42]
          Length = 610

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 300/611 (49%), Positives = 408/611 (66%), Gaps = 19/611 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +A++RHCTSKIS+   +I T GFRGEALPSIG+V+ L++ SR   +  G +
Sbjct: 61  SGMDAADLELAIRRHCTSKISETLEDIRTLGFRGEALPSIGSVARLSIASRKRDSAGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA++G K+  +RP   NPGTIVEVRDLFF  PARL FLK+E+ E   IT++++RMAIA+P
Sbjct: 121 IAVAGGKVLHLRPAGANPGTIVEVRDLFFATPARLKFLKTEKAEAGAITEIVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S   S+R  + F +T  +   R++QV+G+DF +NA+ L+    EI+L G+ G+P
Sbjct: 181 AVRFVLS--GSDRATLEFPATGDDHLARMAQVLGKDFSDNAIALDAVREEISLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAETIP GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETIPSGRYPVAVLSIALDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY-- 358
           PAKS +RFR+P ++R  I+ +I++A+ + G   ++  +  M+ +F     P    P+   
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIREALARDGSRAATTGASDMLRAFRPGFQPYGQRPQAPW 358

Query: 359 ----ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-----------PVEESEATH 403
               + S        F +  + S + L         + +            PV       
Sbjct: 359 SAETSPSRPYQPAPAFSERPQASFDGLSTPTARAEPQFSPDPVSPGLASPRPVAPETVGR 418

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           Y LG A AQIH NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ LL PEI+
Sbjct: 419 YPLGAARAQIHANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQVLLIPEIV 478

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           D+ E +C  +M H  +   LG+  ERFGP AIA+RE PA+L + +   L+R + DEI + 
Sbjct: 479 DIPEEDCDRLMLHAAEFAELGLAIERFGPGAIAVRETPAMLGEVDAHGLIRQLADEIAEW 538

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            T   L  ++E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNHGRPT+I+L
Sbjct: 539 DTASGLSAKLEYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNHGRPTYIEL 598

Query: 584 KLSDIEKLFGR 594
           KLSDIE+LFGR
Sbjct: 599 KLSDIERLFGR 609


>gi|166711797|ref|ZP_02243004.1| DNA mismatch repair protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 625

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/625 (34%), Positives = 340/625 (54%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEMLINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGIAPDELSLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +GEDF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS--------------- 343
           VHPAK  +RFR   +I +F+ +++Q A+       +        +               
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGATPNSIGSDGAGDTGATAGEMGNIAS 358

Query: 344 ---SFHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVE- 397
              + H +    +       S T +Q  L L+  E R + + L         +       
Sbjct: 359 GGLANHGNAPGSSGRAYSYASWTPSQTPLGLRVDEARAAYSALYAPPPRNAPQSTGMPSM 418

Query: 398 --------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S
Sbjct: 419 AGTGLPATAEDSGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAHDS 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        + L  LG +  R GP ++ +R IPA+L+    
Sbjct: 479 IGLHAQPLLVPMTLAVGEREADTAEREADTLATLGFEITRAGPQSLHVRSIPALLANAEP 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 539 EALLRDVLGDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 599 SGQCNHGRPTWARFTLSDIDRWFLR 623


>gi|78048158|ref|YP_364333.1| DNA mismatch repair protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|123757458|sp|Q3BSD0|MUTL_XANC5 RecName: Full=DNA mismatch repair protein mutL
 gi|78036588|emb|CAJ24279.1| DNA mismatch repair protein MutL [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 625

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 220/625 (35%), Positives = 348/625 (55%), Gaps = 33/625 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGIAPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +G+DF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGDDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISS------------ 344
           VHPAK  +RFR   +I +F+ +++Q A+   + G++ +S+ S                  
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGVTPNSIGSDGAGDPGATAGGLGNIAG 358

Query: 345 ----FHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVE- 397
                H + A  +       S T +Q  L L+  E R + + L      +  +       
Sbjct: 359 SGVPNHGNAAGSSGSGYNYASWTPSQTPLGLRVDEARAAYSALYAPPPSSAQQSAGMPSM 418

Query: 398 --------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                     ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S
Sbjct: 419 AGTGLPATAQDSGVPPLGYAVAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAHDS 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+    
Sbjct: 479 IGLHAQPLLVPMTLAVGEREADTAEREAETLATLGFEITRAGPQSLHVRSIPALLANAEP 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
             LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    
Sbjct: 539 EALLRDVLGDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATER 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ +  LSDI++ F R
Sbjct: 599 SGQCNHGRPTWARFTLSDIDRWFLR 623


>gi|325923187|ref|ZP_08184872.1| DNA mismatch repair protein MutL [Xanthomonas gardneri ATCC 19865]
 gi|325546332|gb|EGD17501.1| DNA mismatch repair protein MutL [Xanthomonas gardneri ATCC 19865]
          Length = 620

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/620 (34%), Positives = 348/620 (56%), Gaps = 28/620 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L + +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPDILINQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL+SR      G
Sbjct: 61  GGIPPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLVSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALEIEGGRLGEVTPRAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    +       +        +    + + +GEDF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVAHNGKPSRRYKPGDLYSDAR--LGETLGEDFTRQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKK------------GISTSSVLSKKMISSFH 346
           VHPAK  +RFR   +I +F+ +++Q A+               G S +      M ++ +
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGAMPNSIGTEGTSDTGAAPSGMANTPN 358

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVE------- 397
              A  +       + T +Q  L L+  E R + + L      +  + +  ++       
Sbjct: 359 YGGATGSGGGTGYGNWTPSQTPLGLRVDEARAAYSALYAPPSGSAQQQSAAMQTFSGTGL 418

Query: 398 ---ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S  + +
Sbjct: 419 PATSHDSGVPPLGYAVAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAHDSIGLHA 478

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P  + + E E        + L  LG +  R GP ++ +R IPA+L+      LLR
Sbjct: 479 QPLLVPMTLAVGEREADTAEREADTLASLGFEITRAGPQSLHVRSIPALLANAEPEALLR 538

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           D++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    S QCN
Sbjct: 539 DVLGDLREHGQSRRIATARDELLSTMACHGAVRANRRLSVPEMNALLRDMEATERSGQCN 598

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+ +  L +I++ F R
Sbjct: 599 HGRPTWARFTLGEIDRWFLR 618


>gi|256015004|ref|YP_003105013.1| DNA mismatch repair protein [Brucella microti CCM 4915]
 gi|255997664|gb|ACU49351.1| DNA mismatch repair protein [Brucella microti CCM 4915]
          Length = 623

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/622 (43%), Positives = 395/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MKIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTFNRGNA   + ++NGR V+DK I   +R A+++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PTFNRGNALHQFAYVNGRPVRDKQIFGALRGAHSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--------------------------SED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|56698186|ref|YP_168558.1| DNA mismatch repair protein [Ruegeria pomeroyi DSS-3]
 gi|56679923|gb|AAV96589.1| DNA mismatch repair protein MutL [Ruegeria pomeroyi DSS-3]
          Length = 621

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/607 (42%), Positives = 384/607 (63%), Gaps = 16/607 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   +A GGK+  +++D+G G
Sbjct: 15  IRQLDETAINRIAAGEVVERPASAVKELVENAIDAGATRIAIDLADGGKTLIRVSDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++P+A+ RH TSKI   D  NIHTFGFRGEALPS+G+V  LT+ SR         I
Sbjct: 75  MTPDQLPLALARHATSKIDGSDLLNIHTFGFRGEALPSLGSVGRLTITSRARGAEAAN-I 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG ++  V+P A+  GT+VE+RDLFF  PARL F+++++ E   + D ++R+A+A P 
Sbjct: 134 RVSGGRVDPVKPAALRAGTVVELRDLFFATPARLKFMRTDRAEAQAVADTVKRLAMAEPS 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQ 234
           VSFT    S     R      +  G+      +R++QV+G +F +NA+ ++     + L 
Sbjct: 194 VSFTLRDVSGGGEGRLVFRADAETGDLFDALRDRLAQVMGREFTDNALRIDTMREGLRLY 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   Y+F+NGR V+DK +   +R AY + +   R+P   L ++ DP  
Sbjct: 254 GYAALPTYSRGAAVAQYLFVNGRPVRDKMLTGALRAAYFDFLSRDRHPAAALFIDCDPTL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD------ 348
           VDVNVHPAKS +RFR+P + R  I+ +++ A+ + G   S+ ++   + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGVARGLIVSALRHALAEAGHRASTTVAGATLGAMRPEQTGARI 373

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQ-ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                  P    +    Q   F +  +  S   + P          +P  E+      LG
Sbjct: 374 YQMDRPSPAARMASHQAQAPGFAELSSSYSGRMVEPEPGEDARRAEEPPAETPPESLPLG 433

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK+++    T + +Q LL PEI++L  
Sbjct: 434 AARGQVHENYIIAQTADGMVIVDQHAAHERLVYEKLKRQMAETGVAAQALLIPEIVELST 493

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +CA +++  +DL RLG+  E FG  A+A+RE PAIL   +   +LRDI+DE+ D   + 
Sbjct: 494 ADCARLLDLSDDLARLGLTIEPFGGGAVAVRETPAILGPVDAGAMLRDILDELADQGESA 553

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
           TLQ RIE IL+ +AC+GSIRSGR+M+  EMN LLREME  P+S QCNHGRPT+++LKLSD
Sbjct: 554 TLQARIEAILSRVACHGSIRSGRRMRGEEMNALLREMEATPHSGQCNHGRPTYVELKLSD 613

Query: 588 IEKLFGR 594
           IE+LFGR
Sbjct: 614 IERLFGR 620


>gi|149200821|ref|ZP_01877796.1| DNA mismatch repair protein [Roseovarius sp. TM1035]
 gi|149145154|gb|EDM33180.1| DNA mismatch repair protein [Roseovarius sp. TM1035]
          Length = 611

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/601 (43%), Positives = 390/601 (64%), Gaps = 12/601 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA ++R+E   A GGK+  +++D+G 
Sbjct: 14  QIRQLDEGAINRIAAGEVVERPASAVKELVENALDAGATRIEVSYADGGKTLIRVSDDGC 73

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GMT +E+P+A+ RH TSKI   D  NIH+FGFRGEALPS+GAV  LT++SR       A+
Sbjct: 74  GMTPDELPLALARHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTIVSRA--GAEAAE 131

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G ++ +V+P A+N GT+V +RDLF+  PARL F++S++ E   I D ++R+A+A P
Sbjct: 132 MTVAGGQMGAVKPAALNSGTVVTLRDLFYATPARLKFMRSDRAEAQAIADTVKRLAMAEP 191

Query: 181 KVSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITL 233
            V FT    S     R        +G+  +    R+++V+G +F  NA++++     + L
Sbjct: 192 FVGFTLRDVSGGGEGRIVFRADPESGDLFDALHGRLARVLGAEFAENALKIDATREGLRL 251

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY  +PT+ RG+A   Y+F+NGR V+DK +   +R AY + +   R+P   L L  DP 
Sbjct: 252 TGYAALPTYARGSAVAQYLFVNGRPVRDKMLYGALRAAYQDVLSRDRHPAAALFLGCDPT 311

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVNVHPAKS +RFR+P + R  I+  ++ A+ + G   S+ ++   + +F  + A + 
Sbjct: 312 LVDVNVHPAKSEVRFRDPGLARGLIVSGLRHALAEAGHRASTTVAGATLGAFRAEPAGRI 371

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +     +    +    +  +     +          S     VEE  AT   LG A AQ+
Sbjct: 372 YQMDRPSPQARSL--AYQAQAPGFADMGADWSARVESAPEPEVEEQPATALPLGAARAQV 429

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYII+QT  G+VIVDQHAAHERL++E++++    + I +Q LL PEI+DL E +CAL+
Sbjct: 430 HENYIIAQTETGMVIVDQHAAHERLVYERLKRQMAESGIAAQALLIPEIVDLSEADCALL 489

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M+H E+L  +G+  E FG  ++A+RE PAIL   N   LLRDI+DE+ D   + TL+ RI
Sbjct: 490 MDHAEELAGMGLGIEPFGSGSLAVRETPAILGTVNAGALLRDILDELQDQGASGTLKLRI 549

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + IL+ +AC+GS+RSGR+M + EMN LLREME+ P S QCNHGRPT+++L+LSDIE+LFG
Sbjct: 550 DAILSRVACHGSVRSGRRMSADEMNALLREMERTPMSGQCNHGRPTYVELRLSDIERLFG 609

Query: 594 R 594
           R
Sbjct: 610 R 610


>gi|227821008|ref|YP_002824978.1| DNA mismatch repair protein [Sinorhizobium fredii NGR234]
 gi|254766173|sp|C3MGW0|MUTL_RHISN RecName: Full=DNA mismatch repair protein mutL
 gi|227340007|gb|ACP24225.1| DNA mismatch repair protein MutL [Sinorhizobium fredii NGR234]
          Length = 600

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 296/601 (49%), Positives = 409/601 (68%), Gaps = 9/601 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  ++TDNG
Sbjct: 1   MAIKQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEVATAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM+  ++ +A++RHCTSKI D  ++I T GFRGEALPSIG+V+ L++ +R      GA 
Sbjct: 61  NGMSPADLELAIRRHCTSKIDDTLTDIRTLGFRGEALPSIGSVARLSITTRTAGAREGAA 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G K  SVRP   N GT+VEVRDLFF  PARL F+K+E+ E   I++V+RRMAIA+P
Sbjct: 121 ISVIGGKTESVRPSPANVGTVVEVRDLFFATPARLKFMKTEKAEAAAISEVVRRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           KV F  S   S+R  + F +T  +   R++QV+G+DF +NA+ ++ +  E  L G+ G+P
Sbjct: 181 KVRFVVS--GSDRSTLEFPATGDDRLARMAQVLGKDFRDNAIGIDAEREEARLSGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+ Q Y F+NGR VQDK ILS IR AYAETIP GRYPV VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSLQQYAFVNGRPVQDKLILSAIRAAYAETIPQGRYPVAVLSIALDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA- 359
           PAKS +RFR+P +IR  II +I++A+++ G   ++  ++ M+ SF  +          A 
Sbjct: 299 PAKSDVRFRDPGLIRGLIIGAIREALSRGGDRAATTGAQGMMRSFRPEAYRAEPHRAQAP 358

Query: 360 -TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-----HYQLGIACAQI 413
            T+ T+    +   E      +   +    +++      E+         + LG A AQ+
Sbjct: 359 WTAATSPYRPMRFDEPARGFAEAPQAAFQEFAQPAARPAETAPNGTVEPAFPLGAARAQL 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYI++QT +GLVIVDQHAAHERL+FE MR   +S  + +Q LL PEI+DL E +C  +
Sbjct: 419 HENYIVAQTEEGLVIVDQHAAHERLVFEAMRTALHSRPVPAQALLIPEIVDLAEDDCDRL 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M H E+  RLG+  ERFGP AIA+RE PA+L + +   L+R + DE+ +  T   L  R+
Sbjct: 479 MAHAEEFLRLGLSIERFGPGAIAVRETPAMLGEMDASGLVRQLADELAEWDTANGLAGRL 538

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + + ATMAC+GS+RSGR+M+  EMN LLR+ME  P S QCNHGRPT+I+LKL+DIE+LFG
Sbjct: 539 DYLAATMACHGSVRSGRRMRPEEMNALLRQMEATPGSGQCNHGRPTYIELKLADIERLFG 598

Query: 594 R 594
           R
Sbjct: 599 R 599


>gi|148553415|ref|YP_001260997.1| DNA mismatch repair protein [Sphingomonas wittichii RW1]
 gi|166232109|sp|A5V3J3|MUTL_SPHWW RecName: Full=DNA mismatch repair protein mutL
 gi|148498605|gb|ABQ66859.1| DNA mismatch repair protein MutL [Sphingomonas wittichii RW1]
          Length = 594

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 226/597 (37%), Positives = 355/597 (59%), Gaps = 7/597 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E ++N+IAAGE++ERP+ A+KEL+ENS+DA + R+   ++ GG S   + D+G
Sbjct: 1   MSIRRLPEHLVNRIAAGEVVERPASALKELVENSIDAGARRISVSLSEGGLSAIDVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +EI +A++RH TSK+ DD    + T GFRGEALPSIG+V+ LT+ SR    + G 
Sbjct: 61  CGMTPDEIALALERHATSKLPDDAIEAVTTLGFRGEALPSIGSVADLTIESRVRGAD-GW 119

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +   ++    P A+ PGT + V +LF  +PAR  FL+S + E     DVI+R+A+A 
Sbjct: 120 HRRVDHGELVGEGPAALPPGTRIRVSNLFAKVPARRKFLRSARAEYAACVDVIKRLAMAR 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + FT         +    + +    +R++ +   D   N+V ++ +   ++L G  G+
Sbjct: 180 PDIGFTLEHEGR---RAILVAPDEQRVDRVAALTDRDLAQNSVAVDFRREAVSLTGVAGL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTFNRG A+  ++F+NGR V+D+ ++  +R AY + +   R+PV+ L +E+   QVDVNV
Sbjct: 237 PTFNRGVADHQFLFVNGRPVKDRLLIGAVRGAYQDMLARDRHPVIALFVELPGDQVDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+P ++R  I+  ++ A+++ G  +    S   + ++     P       A
Sbjct: 297 HPAKTEVRFRDPGLVRGMIVGGLRAALDEAGHRSVQRPSVAALGNWQAGGLPTASSTAPA 356

Query: 360 TSLTNTQEKLFLQENRLSTNDLL--PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
                       +  + S  D +   +  P    +       +   Y +G+A  Q+   Y
Sbjct: 357 IPNGFAFGAAAERSGQGSVWDRVADFAPAPMARAEPAYSPPPQQASYPMGVARGQVAATY 416

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+++  DGLVIVDQHAAHERL+ E+MR+      +  Q LL PE+++L E  C  +    
Sbjct: 417 IVAEAEDGLVIVDQHAAHERLVLERMRRAMADGGVARQALLLPEVVELDEVGCDRLETRI 476

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
            +L  +G++ ERFGP A+ +R  PA+L + ++  L+ D+ DE+       +L++R++++ 
Sbjct: 477 AELAEMGLELERFGPKAMLVRATPALLGQGDVHGLIVDLADELAAYDEALSLKERLDHVA 536

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ATMAC+GS+R+GR +   EMN LLREME  P+S QCNHGRPT+IKL   DIEKLFGR
Sbjct: 537 ATMACHGSVRAGRTLSVAEMNALLREMEVTPHSGQCNHGRPTWIKLGHGDIEKLFGR 593


>gi|41582282|gb|AAS07896.1| DNA mismatch repair protein mutL [uncultured marine bacterium 463]
          Length = 624

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/620 (34%), Positives = 344/620 (55%), Gaps = 27/620 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS ++ NQIAAGE++ERP+  +KE++ENSLDA ++RV+  +  GG    +I DNG 
Sbjct: 3   KIQRLSTRLANQIAAGEVVERPASVVKEVLENSLDAGATRVDVDVESGGVKLIRIRDNGN 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-G 118
           G+  +++P+A+ RH TSKI+  +D   + + GFRGEAL SIG+VS LTL S   +  + G
Sbjct: 63  GIDPDDLPLAMARHATSKITSLEDLEAVGSLGFRGEALASIGSVSRLTLTSNASEQGSEG 122

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           +  A  G  +    +P     GT VEVRDLFF  PAR  FL++E+ E N + +V++R+A+
Sbjct: 123 SSAACEGRDMEVQVKPAPHPQGTTVEVRDLFFNTPARRKFLRTEKTEFNHLEEVVKRLAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+F+        +++   +       R++ V G  F++ A+ +   ++   L G+ 
Sbjct: 183 SRFDVAFSLRHNGRGIHQLKAGTGQVEQQRRVATVCGPAFMDQAIYIENAASGFKLWGWV 242

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R  A+  Y F+NGR ++DK I   ++ AY + +  GR+P  VL LE+DP QVDV
Sbjct: 243 GLPTFSRSQADLQYFFVNGRVIRDKLIAHAVKQAYRDVLYHGRHPAFVLYLEVDPAQVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI---STSSVLSKKMIS----------- 343
           NVHP K  +RFR+   + NFI  S+ +A+        + +  L   M+S           
Sbjct: 303 NVHPTKHEVRFRDGRSVHNFIFSSLHRALADVRPTADNPADPLPANMLSTGDGMAINTQT 362

Query: 344 ---------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                    ++              T         F                        
Sbjct: 363 GEISAQGGLAWGAGQGSAVADAPLQTQPGGGFGSRFAPNTVAPAQGSAQLAAYQQLHPQL 422

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
           P + S      LG A AQ+   YI+++   GLV+VD HAAHER+ +E+++   +   I S
Sbjct: 423 PTQGSAEDVPPLGYALAQLKGIYILAENVAGLVLVDMHAAHERITYERLKTARDEEGIRS 482

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P+ I + + E  +  E+++   RLG+     G  A+ IREIP  L   ++ QLLR
Sbjct: 483 QPLLVPQPIAVSQREVQVASENEDLFKRLGLSVGVAGEEALVIREIPVALRDSDVEQLLR 542

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           D++ ++I+  ++  ++  ++ IL+TMAC+GS+R+ R++   EMN LLR+ME+   S QCN
Sbjct: 543 DVLADLIEFGSSERVEAHMDEILSTMACHGSVRANRRLTIPEMNALLRDMEETERSGQCN 602

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+ +++L +++KLF R
Sbjct: 603 HGRPTWTQMRLDELDKLFLR 622


>gi|254480864|ref|ZP_05094110.1| DNA mismatch repair protein MutL [marine gamma proteobacterium
           HTCC2148]
 gi|214038659|gb|EEB79320.1| DNA mismatch repair protein MutL [marine gamma proteobacterium
           HTCC2148]
          Length = 624

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 216/620 (34%), Positives = 344/620 (55%), Gaps = 27/620 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS ++ NQIAAGE++ERP+  +KE++ENSLDA ++RV+  +  GG    +I DNG 
Sbjct: 3   KIQRLSTRLANQIAAGEVVERPASVVKEVLENSLDAGATRVDVDVESGGVKLIRIRDNGN 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-G 118
           G+  +++P+A+ RH TSKI+  +D   + + GFRGEAL SIG+VS LTL S   +  + G
Sbjct: 63  GIDPDDLPLAMARHATSKITSLEDLEAVGSLGFRGEALASIGSVSRLTLTSNASEQGSEG 122

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           +  A  G  +    +P     GT VEVRDLFF  PAR  FL++E+ E N + +V++R+A+
Sbjct: 123 SSAACEGRDMEVQVKPAPHPQGTTVEVRDLFFNTPARRKFLRTEKTEFNHLEEVVKRLAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+F+        +++   +       R++ V G  F++ A+ +   ++   L G+ 
Sbjct: 183 SRFDVAFSLRHNGRGIHQLKAGTGQVEQQRRVATVCGPAFMDQAIYVENAASGFKLWGWV 242

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R  A+  Y F+NGR ++DK I   ++ AY + +  GR+P  VL LE+DP QVDV
Sbjct: 243 GLPTFSRSQADLQYFFVNGRVIRDKLIAHAVKQAYRDVLYHGRHPAFVLYLEVDPAQVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI---STSSVLSKKMIS----------- 343
           NVHP K  +RFR+   + NFI  S+ +A+        + +  L   M+S           
Sbjct: 303 NVHPTKHEVRFRDGRSVHNFIFSSLHRALADVRPTADNPADPLPANMLSTGDGMAINTQT 362

Query: 344 ---------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                    ++              T         F                        
Sbjct: 363 GEISAQGGLAWGAGQGSAVADAPLQTQPGGGFGSRFAPNTVAPAQGSAQLAAYQQLHPQL 422

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
           P + S      LG A AQ+   YI+++   GLV+VD HAAHER+ +E+++   +   I S
Sbjct: 423 PTQGSAEDVPPLGYALAQLKGIYILAENVAGLVLVDMHAAHERITYERLKTARDEEGIRS 482

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P+ I + + E  +  E+++   RLG+     G  A+ IREIP  L   ++ QLLR
Sbjct: 483 QPLLVPQPIAVSQREVQVASENEDLFKRLGLSVGVAGEEALVIREIPVALRDSDVEQLLR 542

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           D++ ++I+  ++  ++  ++ IL+TMAC+GS+R+ R++   EMN LLR+ME+   S QCN
Sbjct: 543 DVLADLIEFGSSERVEAHMDEILSTMACHGSVRANRRLTIPEMNALLRDMEETERSGQCN 602

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+ +++L +++KLF R
Sbjct: 603 HGRPTWTQMRLDELDKLFLR 622


>gi|115523441|ref|YP_780352.1| DNA mismatch repair protein [Rhodopseudomonas palustris BisA53]
 gi|122297082|sp|Q07RR2|MUTL_RHOP5 RecName: Full=DNA mismatch repair protein mutL
 gi|115517388|gb|ABJ05372.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris
           BisA53]
          Length = 603

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 247/606 (40%), Positives = 375/606 (61%), Gaps = 16/606 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+N+IAAGE++ERP+  +KEL+EN+LDA ++R+E    GGG+    ITD+G
Sbjct: 1   MPVRQLPETIVNRIAAGEVVERPASVVKELVENALDAGANRIEVFSDGGGRRRIAITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV RH TSK+ D D   I T GFRGEALPSIG+V+ L++ +R  +     
Sbjct: 61  GGMTRADLELAVDRHATSKLDDEDLLAIRTLGFRGEALPSIGSVAKLSITTRHTEEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +A+ G   S + P A++ GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 ALAVEGGTKSPLVPAALSQGTRVEVSDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V+FT S  +                  R+S ++G +F  +A+E+  + + + ++G+ G
Sbjct: 181 PDVAFTLSGEERAPVSWAAVLPGAAGRLTRLSDILGAEFRKSAIEVRSERDGVVVEGFAG 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+D+ I+  +R AYA+ +P  R+PV+ L +  DP +VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDRLIIGAVRAAYADYLPRDRHPVLALFVTCDPHEVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI-STSSVLSKKMISSFHQDNAPKTH--- 354
           VHPAK+ +RFR+  ++R  I+ +++  ++++G  S ++ +    +++F    AP      
Sbjct: 301 VHPAKTEVRFRDAGLVRALIVHALKDGLSREGQRSAAASVDGATLAAFRPGFAPPPRANW 360

Query: 355 ----LPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                P Y  + +N  +    F +  +   +  LPS D      N     +E     LG 
Sbjct: 361 DWRRSPSYPIAGSNAMDMAPGFAEREQAGFDVGLPSADV----RNYAAPAAELIDRPLGA 416

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A  QIH+ YI++QT  GLVIVDQHAAHERL++EK++    S  +  Q LL PEI++L E 
Sbjct: 417 ARTQIHETYIVAQTRTGLVIVDQHAAHERLVYEKLKASMASNGVQRQLLLIPEIVELDEA 476

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
               +++  E+L   G+  + FGP A+A+RE+PA+L K N   LLRD+ + + +      
Sbjct: 477 TVEQLLDRAEELCSFGLAIDSFGPGAVAVREVPALLGKANAASLLRDLAEHMAEWDEALP 536

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           L+ R+ ++ ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++L LSDI
Sbjct: 537 LERRLLHVAATMACHGSVRAGRILKPEEMNALLREMEATPNSGQCNHGRPTYVELTLSDI 596

Query: 589 EKLFGR 594
           EKLFGR
Sbjct: 597 EKLFGR 602


>gi|94500524|ref|ZP_01307055.1| DNA mismatch repair protein [Oceanobacter sp. RED65]
 gi|94427314|gb|EAT12293.1| DNA mismatch repair protein [Oceanobacter sp. RED65]
          Length = 634

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/630 (34%), Positives = 354/630 (56%), Gaps = 37/630 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+E     GG    +I DNG 
Sbjct: 3   RIHVLSPRLANQIAAGEVVERPANVVKELVENSLDAGATRIEVDAEQGGVKLIRIRDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+++ RH TSKI D  D  ++ + GFRGEAL SI +VS L+L S   ++    
Sbjct: 63  GIEKDDLPLSLSRHATSKIVDLDDLESVQSLGFRGEALASIASVSRLSLSSHEQESELAY 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +++  +P A   GT VE+RDLFF  PAR  FL++E+ E N + +V++RMA++
Sbjct: 123 QVTAEGRDMATEVKPCAHPVGTTVEMRDLFFNTPARRKFLRTEKTEFNHLEEVVKRMALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              VSF         + +   S+  +  +RI+ ++   F+  AV ++ ++  + L G+ G
Sbjct: 183 RYDVSFQLRHNNKVIHSLRPCSSAFDQEKRIATLLSAQFMKEAVRIDMEAAGLKLWGWVG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTFNR  A+  Y F+NGR V+DK +   IR AY + +  GR+   VL LE+DP  VDVN
Sbjct: 243 LPTFNRSQADMQYFFVNGRIVRDKLVAHAIRQAYQDVLYHGRHSAFVLYLELDPALVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------------------- 338
           VHP K  +RFR+  ++ +F+ +++ KA+ +    T S                       
Sbjct: 303 VHPTKHEVRFRDGRLVHDFLFRTLHKALGEVRPETPSTDHAIPGQLQGQSQVSGIEAGEF 362

Query: 339 --KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS------------ 384
             +  ++           L +      N  E   +QE   +  +L  +            
Sbjct: 363 AGQNAMALSQVQGQSSNALTQSQPWQANRPEPGQVQEQMAAYQNLYQAPPADSGLANQPI 422

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
               +       +E++     LG A AQ+H  YI+SQ   GLV+VD HAAHER+ +E+++
Sbjct: 423 QSNPFQTQPQATDENQQDIPPLGYAIAQLHGIYILSQNQHGLVVVDMHAAHERITYERLK 482

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
             +++  I SQ LL PE I +   +  +  +H+ D+ +LG + +R GP ++ IR++P +L
Sbjct: 483 MTYDAQGIQSQPLLVPETIHVSVEQADIAEQHEADIQKLGFQLQRLGPESLVIRQMPVLL 542

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              NI  L+  ++++   + ++  + +    IL++MAC+GS+R+ R++   EMN LLR+M
Sbjct: 543 KNANIEHLVVKVLEDYRTAGSSRHMTEFRNEILSSMACHGSVRANRQLTIAEMNGLLRDM 602

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E+   S QCNHGRPT+ +L +++++KLF R
Sbjct: 603 EQTERSGQCNHGRPTWTQLSMNELDKLFLR 632


>gi|299134224|ref|ZP_07027417.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2]
 gi|298590971|gb|EFI51173.1| DNA mismatch repair protein MutL [Afipia sp. 1NLS2]
          Length = 598

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 234/597 (39%), Positives = 372/597 (62%), Gaps = 3/597 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E+I+N+IAAGE++ERP+ A+KEL+EN++DA  +R++    GGG+    ITD+G
Sbjct: 1   MPVRQLPEQIVNRIAAGEVVERPASAVKELVENAIDAGGTRIDIFTEGGGRRRIAITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV+RH TSK+ D D   I T GFRGEALPSIG+V+ L + +R        
Sbjct: 61  SGMTRGDLALAVERHATSKLDDEDLLRIRTLGFRGEALPSIGSVAKLAITTRHANEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +     S + P A+  GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 ALQVDAGTKSGIAPAALAHGTRVEVNDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF  +A+E++ +   ++++G+  
Sbjct: 181 PDIAFTLAGEERAPVTWAAALPGAAGRLTRLGDILGSDFRTHAIEVSAEREGVSVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK IL  +R AYA+ +P  R+P+V L + +DP++VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLILGAVRAAYADYLPRDRHPIVALFVTLDPQEVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS-SFHQDNAPKTHLPK 357
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++  +   I+ +FH+++ P++    
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANTNGAAITTAFHREDLPRSGYDW 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
            ++       +        +      +  P+          SEA +  LG A  Q+H+NY
Sbjct: 361 RSSPAAPFAPRASAMAFAEAPQAAFDAYTPSADARGHDAPLSEAVNQPLGAARTQLHENY 420

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I++QT DGL++VDQHAAHER+++E+++       +  Q LL PEI+++ E     ++   
Sbjct: 421 IVAQTNDGLILVDQHAAHERIVYERLKASLEKNGVQRQMLLIPEIVEMDEAVVEKLLART 480

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
            +L + G+  E FGP A+A+RE P++L K N   LLRD+ + + +      L+ R+ ++ 
Sbjct: 481 GELEKYGLAIESFGPGAVAVRETPSLLGKTNAASLLRDLAEHMAEWDEALPLERRLMHVA 540

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ATMAC+GS+RSGR ++  EMN LLREME  PNS QCNHGRPT+++LKL+DIEKLFGR
Sbjct: 541 ATMACHGSVRSGRILKVEEMNALLREMEATPNSGQCNHGRPTYVELKLADIEKLFGR 597


>gi|39937431|ref|NP_949707.1| DNA mismatch repair protein [Rhodopseudomonas palustris CGA009]
 gi|81829456|sp|Q6N1N4|MUTL_RHOPA RecName: Full=DNA mismatch repair protein mutL
 gi|39651290|emb|CAE29812.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris
           CGA009]
          Length = 595

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 234/599 (39%), Positives = 366/599 (61%), Gaps = 10/599 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+N+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    I D+G
Sbjct: 1   MPVRQLPETIVNRIAAGEVVERPASVVKELVENAIDAGASRIDIFSDGGGRRKIVIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L++ +R        
Sbjct: 61  SGMTQADLALAVDRHATSKLDDEDLLQIRTLGFRGEALPSIGAVARLSITTRHAAEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G   + + P A+  GT VEV DLFF  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 ALRVEGGDKTPIAPAALTQGTRVEVADLFFATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V+FT +  +                  R+  ++G DF  NA+E+  +   + ++G+  
Sbjct: 181 PDVAFTLAGEERAPVTWAAALPGAPGQLIRLGDILGADFRANAIEVRAEREGVVVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  + NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PVV L + +D R+VD N
Sbjct: 241 APSLTKANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVVALFVTLDAREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ +++  + ++G  T++  +  +IS+F   + P  +    
Sbjct: 301 VHPAKTEVRFRNSGLVRALIVHALKDGLAREGRRTAANSASSVISTFRPASMPPANWDWR 360

Query: 359 ATSLTN---TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           ++       +    F +  + + +   PS D    E        +     LG A  QIH+
Sbjct: 361 SSPSYPVGGSAAPSFAERAQAAFDVGAPSADIRPQEVT-----PDLLDRPLGAARTQIHE 415

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+SQT DGL+++DQHAAHER+++E+++    +  +  Q LL P+I+++ E     ++ 
Sbjct: 416 TYIVSQTRDGLIVIDQHAAHERIVYERLKASLEANGVQRQILLIPDIVEMDEATVERLVA 475

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E+L + G+  E FGP A+A+RE P++L K +   LLRD+ + + +      L+ R+ +
Sbjct: 476 RAEELAQFGLVIESFGPGAVAVRETPSLLGKTDASGLLRDLAEHMAEWDEALPLERRLMH 535

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++L L+DIEKLFGR
Sbjct: 536 VAATMACHGSVRAGRVLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLADIEKLFGR 594


>gi|316935889|ref|YP_004110871.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris DX-1]
 gi|315603603|gb|ADU46138.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris DX-1]
          Length = 595

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 236/599 (39%), Positives = 370/599 (61%), Gaps = 10/599 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+N+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    I D+G
Sbjct: 1   MPVRQLPETIVNRIAAGEVVERPASVVKELVENAIDAGASRIDIFSDGGGRRKIVIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT+ ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L++ +R        
Sbjct: 61  SGMTAVDLALAVDRHATSKLDDEDLLAIRTLGFRGEALPSIGAVARLSITTRHASEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G   + + P A++ GT VEV DLFF  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 AMRVEGGDKTPIAPAALSQGTRVEVADLFFATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V+FT +  +                  R+  ++G DF  NA+E+  +   + ++G+  
Sbjct: 181 PDVAFTLAGEERAPVTWAAALPGAPGQLIRLGDILGADFRANAIEVRAEREGVVVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PVV L + +D R+VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVVALFVTLDSREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++  +  +IS+F   + P  +    
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANSASSVISTFRPASMPPANWDWR 360

Query: 359 ATSLTN---TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           A+       +    F +  + + +   PS D   +E        +     LG A  QIH+
Sbjct: 361 ASPSYPVGGSAAPSFAERAQAAFDVGAPSADIRLTEVT-----PDLLDRPLGAARTQIHE 415

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+SQT DGL+++DQHAAHER+++E+++    +  +  Q LL P+I+++ E     ++ 
Sbjct: 416 TYIVSQTRDGLIVIDQHAAHERIVYERLKASLEANGVQRQILLIPDIVEMDEATVERLVA 475

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E+L + G+  E FGP A+A+RE P++L K +   LLRD+ + + +      L+ R+ +
Sbjct: 476 RAEELAKFGLVIESFGPGAVAVRETPSLLGKTDAGGLLRDLAEHMAEWDEALPLERRLMH 535

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++L L+DIEKLFGR
Sbjct: 536 VAATMACHGSVRAGRVLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLADIEKLFGR 594


>gi|163844405|ref|YP_001622060.1| DNA mismatch repair protein [Brucella suis ATCC 23445]
 gi|189030393|sp|A9WXS2|MUTL_BRUSI RecName: Full=DNA mismatch repair protein mutL
 gi|163675128|gb|ABY39238.1| DNA mismatch repair protein MutL [Brucella suis ATCC 23445]
          Length = 623

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 395/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--------------------------SED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG+A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGVARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|126738320|ref|ZP_01754041.1| DNA mismatch repair protein [Roseobacter sp. SK209-2-6]
 gi|126720817|gb|EBA17522.1| DNA mismatch repair protein [Roseobacter sp. SK209-2-6]
          Length = 653

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 257/627 (40%), Positives = 389/627 (62%), Gaps = 35/627 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + R+   IA GGK+  ++TD+G 
Sbjct: 27  QIRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGAHRITVEIADGGKTLIRVTDDGC 86

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GM++E++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR   ++  AQ
Sbjct: 87  GMSAEDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAAGHD-AAQ 145

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +SG ++  V+P A+  GT+VE+RDLF+  PARL F+++++ E   I DVI+R+A+A P
Sbjct: 146 IKVSGGRMDPVKPAALRAGTVVELRDLFYATPARLKFMRTDRAEAQAIGDVIKRLAMAEP 205

Query: 181 KVSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITL 233
            V FT    S     R        +G+  +    R++ V+G +F  NA++++ +   + L
Sbjct: 206 SVGFTLRDVSGGGEGRVTFRADPLSGDLFDALHGRLASVLGREFAENALKIDAEREGVRL 265

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L ++ DP 
Sbjct: 266 FGYAALPTYSRGAAVAQFLFVNSRPVKDKMLTGALRAAYFDFLSRDRHPAAALFIDCDPT 325

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVNVHPAKS +RFR+P + R  I+ +++ A+ + G   S+ ++   + +   +    +
Sbjct: 326 LVDVNVHPAKSEVRFRDPGVARGLIVSALRHALAEAGHRASTTVAGATLGAMRPEAPTAS 385

Query: 354 HLPKY------------------------ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
             P+                         A S      + F +     +  +L       
Sbjct: 386 GAPRVYQMDRPSFGARNASYAAQSPGQPLAQSADAPPSQGFAELATAYSGRVLEETAEAP 445

Query: 390 SEDNDPVEESE--ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +  D    S   A    LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++E+++   
Sbjct: 446 GQMPDAPTTSSPGAEELPLGAARGQVHENYIIAQTRDGMVIVDQHAAHERLVYERLKAQM 505

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               + +Q LL PEI++L E +CA ++ H EDL + G+  E FG NA+A+RE PA+L + 
Sbjct: 506 AENGVAAQALLIPEIVELGESDCARLLSHAEDLKKFGLTLEAFGGNAVAVRETPALLGEV 565

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           N   ++RDI+DE+ D   +  +Q R+E IL+ +AC+GSIRSGR+M+  EMN LLREME  
Sbjct: 566 NAGAMVRDILDELDDLGESQLVQARLEAILSRVACHGSIRSGRRMRGEEMNALLREMEAT 625

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 626 PHSGQCNHGRPTYVELKLADIERLFGR 652


>gi|254712072|ref|ZP_05173883.1| DNA mismatch repair protein [Brucella ceti M644/93/1]
 gi|254715142|ref|ZP_05176953.1| DNA mismatch repair protein [Brucella ceti M13/05/1]
 gi|261216852|ref|ZP_05931133.1| DNA mismatch repair protein mutL [Brucella ceti M13/05/1]
 gi|261319719|ref|ZP_05958916.1| DNA mismatch repair protein mutL [Brucella ceti M644/93/1]
 gi|260921941|gb|EEX88509.1| DNA mismatch repair protein mutL [Brucella ceti M13/05/1]
 gi|261292409|gb|EEX95905.1| DNA mismatch repair protein mutL [Brucella ceti M644/93/1]
          Length = 623

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 394/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--------------------------SED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQKLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|70734068|ref|YP_257708.1| DNA mismatch repair protein [Pseudomonas fluorescens Pf-5]
 gi|68348367|gb|AAY95973.1| DNA mismatch repair protein MutL [Pseudomonas fluorescens Pf-5]
          Length = 636

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/625 (33%), Positives = 339/625 (54%), Gaps = 32/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 10  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGAKRIDVDVEQAGVKLLRVRDDGS 69

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR        
Sbjct: 70  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDAEQAW 129

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +   V+P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+R+A+A
Sbjct: 130 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRLALA 189

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F       +   ++    +     R++ V G  F+  A+ +  + N + L G+ G
Sbjct: 190 RFDVAFHLRHNGKSILSLHEAKDDAARARRVAAVCGSGFLEQALPIEVERNGLHLWGWVG 249

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 250 LPTFSRSQADLQYFYVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPSVVDVN 309

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------DNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+              +            +  P+
Sbjct: 310 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPEDQLAAPAAVAGIVRPTGIEAGEFGPQ 369

Query: 353 THLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL----- 406
             +   A  +L   Q +                      +   P  ES+  + +      
Sbjct: 370 GEMRLAANLALEQPQSQPSFNAPGAGAGSGYQYQYTPRPQPVLPAAESQGVYREFFAPLP 429

Query: 407 -----------------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                            G A AQ+   YI+++   GLV+VD HAAHER+++E+++    S
Sbjct: 430 GAPAAALPDGQEDIPPLGYALAQLKGIYILAENALGLVLVDMHAAHERIMYERLKVAMAS 489

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP ++AIR+IPA+L +   
Sbjct: 490 EGLSGQPLLVPESIAVSQREADCAEEHMSWFQRLGFELQRLGPESLAIRQIPALLKQAEA 549

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 550 NRLVHDVLADLMEYGTSDRIQAHLNELLGTMACHGAIRANRRLALPEMNALLRDMENTER 609

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L D++KLF R
Sbjct: 610 SGQCNHGRPTWTQMGLDDLDKLFLR 634


>gi|94429030|gb|ABF18946.1| DNA mismatch repair protein mutL [uncultured bacterium pFosLip]
          Length = 585

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/598 (35%), Positives = 333/598 (55%), Gaps = 19/598 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L   +INQIAAGE++ERP+  +KEL+ENSLDA +  V   I  GG    ++ D+G
Sbjct: 1   MPIQQLPNHLINQIAAGEVVERPASVVKELLENSLDAGAQAVHVDILAGGSKLIRVRDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKIS  +D   + + GFRGEALPSI +V+ L+L SR    +  
Sbjct: 61  AGIPQGELSLALARHATSKISSLEDLEAVVSLGFRGEALPSIASVARLSLTSRSTGGDNA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            Q+     +I   RP A   GT VEV DLF+  PAR  FLK+E+ E   I   +RR+A+A
Sbjct: 121 WQVEADNGEIGEARPAAHPGGTTVEVHDLFYNTPARRRFLKTERTEFGHIDKWVRRLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V+F  +  +     +   +      +R++++ GE F   AV L  ++  I + G+ G
Sbjct: 181 RPDVAFVLTHNRRTVLDLRAATNREQQQQRLARICGEAFAEQAVYLQHETEGIAITGWIG 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTFNR   +  + F+NGR++ DK +    R AY + +  GR+P  VL L +DP  +D N
Sbjct: 241 LPTFNRSQPDLQFWFVNGRSISDKTLSHAARHAYRDVLFHGRFPAYVLGLTVDPATIDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI--SSFHQDNAPKTHLP 356
            HPAK  IRFR+   I   + Q+++ A++    S   V    +   S   QD       P
Sbjct: 301 AHPAKHEIRFRDGRRIHGVVAQAVEVALSDTRPSGHGVAPAPVASGSPIRQDGLRLPAAP 360

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
           + A           ++E+  + + L     P  + D D  E        +G A AQ+   
Sbjct: 361 RPAA----------VRESLATYSALAGGAPPVSASDRDAGELPP-----MGYAIAQLGGV 405

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI+++  +GLV+VD HAAHER+ +EK+++ F+   +  Q LL P  + + E E     E 
Sbjct: 406 YILAENREGLVVVDMHAAHERITYEKLKKGFDDKALVRQPLLVPVTVAVAESEARHAEEA 465

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L  +G+  +R GP ++ +RE+PA+L   +   LLRD++ +I  +  +  ++D     
Sbjct: 466 SELLALVGLVVDRAGPTSLVVREVPALLRGADAEALLRDVLADIAQAGQSSRVEDECHEF 525

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATMAC+ S+R+ R++   EMN LLREME    + QCNHGRPT+  + ++++++LF R
Sbjct: 526 LATMACHHSVRANRQLTLEEMNALLREMETTERADQCNHGRPTWTAISMAELDRLFLR 583


>gi|161620296|ref|YP_001594182.1| DNA mismatch repair protein [Brucella canis ATCC 23365]
 gi|189030392|sp|A9MDX3|MUTL_BRUC2 RecName: Full=DNA mismatch repair protein mutL
 gi|161337107|gb|ABX63411.1| DNA mismatch repair protein MutL [Brucella canis ATCC 23365]
          Length = 623

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 394/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAKATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--------------------------SED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|85717173|ref|ZP_01048131.1| DNA mismatch repair protein [Nitrobacter sp. Nb-311A]
 gi|85696006|gb|EAQ33906.1| DNA mismatch repair protein [Nitrobacter sp. Nb-311A]
          Length = 603

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 231/602 (38%), Positives = 361/602 (59%), Gaps = 8/602 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E ++N+IAAGE++ERP+  +KEL+EN++DA ++R++    GGG+    +TD+G
Sbjct: 1   MPVRQLPETVVNRIAAGEVVERPASVVKELVENAIDAGATRIDVFTDGGGRRRIGVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM   ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L + +R  +     
Sbjct: 61  AGMAKGDLALAVDRHATSKLDDEDLLGIRTLGFRGEALPSIGAVARLCITTRDAREPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G + S++ P A+  GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 SLTVEGGRKSAIVPAALTQGTRVEVGDLFYATPARLKFLKTDRAEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKS-NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P + FT +          +          R+  ++G DF   A+ +  +   +T+ G+  
Sbjct: 181 PDIGFTLAGEGRAPVTWTSALPGAAGRLTRLGDILGGDFRAAAIPVCAERERVTVDGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PV  L +  DP++VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVAALFVTTDPQEVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++     ++++F    +P+     +
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANSDGAVLTAFRPATSPRPAGWDW 360

Query: 359 ATSLTNTQEKLFLQENRLST------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
             S     +         +T         L    P+     D     +     LG A  Q
Sbjct: 361 RQSPAAPADARPWAGGLPATAFAETGQTTLDVGAPSADVRFDAGPPLDLVDRPLGAARTQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH+ YI+SQT DGL++VDQHAAHER+++E+++       +  Q LL P+I++L E     
Sbjct: 421 IHETYIVSQTRDGLIVVDQHAAHERIVYERLKASLARDGVQRQILLIPDIVELDESTVEK 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +++   +L + G+  E FGP A+A+RE P++L K N   LLRD+ + + +   T  L+ R
Sbjct: 481 LIDRARELEKFGLAIESFGPGAVAVRETPSLLGKINAAALLRDLAEHMAEWDETLPLERR 540

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           + ++ ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++LKL DIEKLF
Sbjct: 541 LMHVAATMACHGSVRAGRILKPEEMNALLREMEATPNSGQCNHGRPTYVELKLDDIEKLF 600

Query: 593 GR 594
           GR
Sbjct: 601 GR 602


>gi|17989371|ref|NP_542004.1| DNA mismatch repair protein [Brucella melitensis bv. 1 str. 16M]
 gi|23499977|ref|NP_699417.1| DNA mismatch repair protein [Brucella suis 1330]
 gi|62317165|ref|YP_223018.1| DNA mismatch repair protein [Brucella abortus bv. 1 str. 9-941]
 gi|83269147|ref|YP_418438.1| DNA mismatch repair protein [Brucella melitensis biovar Abortus
           2308]
 gi|148558497|ref|YP_001257266.1| DNA mismatch repair protein [Brucella ovis ATCC 25840]
 gi|189022424|ref|YP_001932165.1| DNA mismatch repair protein [Brucella abortus S19]
 gi|237816724|ref|ZP_04595716.1| DNA mismatch repair protein MutL [Brucella abortus str. 2308 A]
 gi|254691352|ref|ZP_05154606.1| DNA mismatch repair protein [Brucella abortus bv. 6 str. 870]
 gi|254695348|ref|ZP_05157176.1| DNA mismatch repair protein [Brucella abortus bv. 3 str. Tulya]
 gi|254698443|ref|ZP_05160271.1| DNA mismatch repair protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699509|ref|ZP_05161337.1| DNA mismatch repair protein [Brucella suis bv. 5 str. 513]
 gi|254702632|ref|ZP_05164460.1| DNA mismatch repair protein [Brucella suis bv. 3 str. 686]
 gi|254706237|ref|ZP_05168065.1| DNA mismatch repair protein [Brucella pinnipedialis M163/99/10]
 gi|254711470|ref|ZP_05173281.1| DNA mismatch repair protein [Brucella pinnipedialis B2/94]
 gi|254731891|ref|ZP_05190469.1| DNA mismatch repair protein [Brucella abortus bv. 4 str. 292]
 gi|256029899|ref|ZP_05443513.1| DNA mismatch repair protein [Brucella pinnipedialis M292/94/1]
 gi|256043138|ref|ZP_05446080.1| DNA mismatch repair protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256059548|ref|ZP_05449747.1| DNA mismatch repair protein [Brucella neotomae 5K33]
 gi|256111875|ref|ZP_05452836.1| DNA mismatch repair protein [Brucella melitensis bv. 3 str. Ether]
 gi|256158069|ref|ZP_05455987.1| DNA mismatch repair protein [Brucella ceti M490/95/1]
 gi|256252976|ref|ZP_05458512.1| DNA mismatch repair protein [Brucella ceti B1/94]
 gi|256256537|ref|ZP_05462073.1| DNA mismatch repair protein [Brucella abortus bv. 9 str. C68]
 gi|260544399|ref|ZP_05820220.1| DNA mismatch repair protein mutL [Brucella abortus NCTC 8038]
 gi|260564360|ref|ZP_05834845.1| DNA mismatch repair protein mutL [Brucella melitensis bv. 1 str.
           16M]
 gi|260568459|ref|ZP_05838928.1| DNA mismatch repair protein mutL [Brucella suis bv. 4 str. 40]
 gi|260756962|ref|ZP_05869310.1| DNA mismatch repair protein mutL [Brucella abortus bv. 6 str. 870]
 gi|260759664|ref|ZP_05872012.1| DNA mismatch repair protein mutL [Brucella abortus bv. 4 str. 292]
 gi|260762906|ref|ZP_05875238.1| DNA mismatch repair protein mutL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882774|ref|ZP_05894388.1| DNA mismatch repair protein mutL [Brucella abortus bv. 9 str. C68]
 gi|261215721|ref|ZP_05930002.1| DNA mismatch repair protein mutL [Brucella abortus bv. 3 str.
           Tulya]
 gi|261220069|ref|ZP_05934350.1| DNA mismatch repair protein mutL [Brucella ceti B1/94]
 gi|261313678|ref|ZP_05952875.1| DNA mismatch repair protein mutL [Brucella pinnipedialis
           M163/99/10]
 gi|261319079|ref|ZP_05958276.1| DNA mismatch repair protein mutL [Brucella pinnipedialis B2/94]
 gi|261323516|ref|ZP_05962713.1| DNA mismatch repair protein mutL [Brucella neotomae 5K33]
 gi|261749964|ref|ZP_05993673.1| DNA mismatch repair protein mutL [Brucella suis bv. 5 str. 513]
 gi|261753217|ref|ZP_05996926.1| DNA mismatch repair protein mutL [Brucella suis bv. 3 str. 686]
 gi|265986917|ref|ZP_06099474.1| DNA mismatch repair protein mutL [Brucella pinnipedialis M292/94/1]
 gi|265989570|ref|ZP_06102127.1| DNA mismatch repair protein mutL [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993328|ref|ZP_06105885.1| DNA mismatch repair protein mutL [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996583|ref|ZP_06109140.1| DNA mismatch repair protein mutL [Brucella ceti M490/95/1]
 gi|297249893|ref|ZP_06933594.1| DNA mismatch repair protein mutL [Brucella abortus bv. 5 str.
           B3196]
 gi|54037874|sp|P65490|MUTL_BRUSU RecName: Full=DNA mismatch repair protein mutL
 gi|54041515|sp|P65489|MUTL_BRUME RecName: Full=DNA mismatch repair protein mutL
 gi|81309329|sp|Q579M7|MUTL_BRUAB RecName: Full=DNA mismatch repair protein mutL
 gi|123727280|sp|Q2YIH2|MUTL_BRUA2 RecName: Full=DNA mismatch repair protein mutL
 gi|166232081|sp|A5VTW1|MUTL_BRUO2 RecName: Full=DNA mismatch repair protein mutL
 gi|238691508|sp|B2SD15|MUTL_BRUA1 RecName: Full=DNA mismatch repair protein mutL
 gi|17985243|gb|AAL54268.1| DNA mismatch repair protein mutl [Brucella melitensis bv. 1 str.
           16M]
 gi|23463559|gb|AAN33422.1| DNA mismatch repair protein MutL [Brucella suis 1330]
 gi|62197358|gb|AAX75657.1| MutL, DNA mismatch repair protein [Brucella abortus bv. 1 str.
           9-941]
 gi|82939421|emb|CAJ12378.1| DNA mismatch repair protein:ATP-binding region, ATPase-like
           [Brucella melitensis biovar Abortus 2308]
 gi|148369782|gb|ABQ62654.1| DNA mismatch repair protein MutL [Brucella ovis ATCC 25840]
 gi|189020998|gb|ACD73719.1| DNA mismatch repair protein [Brucella abortus S19]
 gi|237787537|gb|EEP61753.1| DNA mismatch repair protein MutL [Brucella abortus str. 2308 A]
 gi|260097670|gb|EEW81544.1| DNA mismatch repair protein mutL [Brucella abortus NCTC 8038]
 gi|260152003|gb|EEW87096.1| DNA mismatch repair protein mutL [Brucella melitensis bv. 1 str.
           16M]
 gi|260155124|gb|EEW90205.1| DNA mismatch repair protein mutL [Brucella suis bv. 4 str. 40]
 gi|260669982|gb|EEX56922.1| DNA mismatch repair protein mutL [Brucella abortus bv. 4 str. 292]
 gi|260673327|gb|EEX60148.1| DNA mismatch repair protein mutL [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677070|gb|EEX63891.1| DNA mismatch repair protein mutL [Brucella abortus bv. 6 str. 870]
 gi|260872302|gb|EEX79371.1| DNA mismatch repair protein mutL [Brucella abortus bv. 9 str. C68]
 gi|260917328|gb|EEX84189.1| DNA mismatch repair protein mutL [Brucella abortus bv. 3 str.
           Tulya]
 gi|260918653|gb|EEX85306.1| DNA mismatch repair protein mutL [Brucella ceti B1/94]
 gi|261298302|gb|EEY01799.1| DNA mismatch repair protein mutL [Brucella pinnipedialis B2/94]
 gi|261299496|gb|EEY02993.1| DNA mismatch repair protein mutL [Brucella neotomae 5K33]
 gi|261302704|gb|EEY06201.1| DNA mismatch repair protein mutL [Brucella pinnipedialis
           M163/99/10]
 gi|261739717|gb|EEY27643.1| DNA mismatch repair protein mutL [Brucella suis bv. 5 str. 513]
 gi|261742970|gb|EEY30896.1| DNA mismatch repair protein mutL [Brucella suis bv. 3 str. 686]
 gi|262550880|gb|EEZ07041.1| DNA mismatch repair protein mutL [Brucella ceti M490/95/1]
 gi|262764198|gb|EEZ10230.1| DNA mismatch repair protein mutL [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000239|gb|EEZ12929.1| DNA mismatch repair protein mutL [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|264659114|gb|EEZ29375.1| DNA mismatch repair protein mutL [Brucella pinnipedialis M292/94/1]
 gi|297173762|gb|EFH33126.1| DNA mismatch repair protein mutL [Brucella abortus bv. 5 str.
           B3196]
          Length = 623

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 394/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--------------------------SED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|85705062|ref|ZP_01036162.1| DNA mismatch repair protein [Roseovarius sp. 217]
 gi|85670384|gb|EAQ25245.1| DNA mismatch repair protein [Roseovarius sp. 217]
          Length = 611

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/601 (43%), Positives = 385/601 (64%), Gaps = 12/601 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E  +N+IAAGE++ERP+ A+KEL+EN+LDA ++R+E   A GGK+  ++ D+G 
Sbjct: 14  QIRQLDEAAVNRIAAGEVVERPASAVKELVENALDAGATRIEVGFADGGKTLIRVMDDGC 73

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GM  +++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR       A+
Sbjct: 74  GMAPDQLPLALARHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTIASRAGDA--AAE 131

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++G +  +V+P A+N GT+V +RDLF+  PARL F++S++ E   I D ++R+A+A P
Sbjct: 132 ITVAGGQAGAVKPAALNAGTVVTLRDLFYATPARLKFMRSDRAEAQAIADTVKRLAMAEP 191

Query: 181 KVSF---TFSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITL 233
            V F     S     R        +G+  +    R+++V+G +F  NA+ ++     + +
Sbjct: 192 FVGFVLREVSGGGEGRIVFRADPESGDLFDALHGRLARVLGAEFAENALRIDATREGVRM 251

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY  +PT++RG+A   Y+F+NGR V+DK +   +R AY + +   R+P V L L+ DP 
Sbjct: 252 TGYAALPTYSRGSAVAQYLFVNGRPVRDKMLYGALRAAYQDVLSRDRHPAVALFLDCDPT 311

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVNVHPAKS +RFR+P + R  I+  ++ A+ + G   S+ ++   + +F  +   + 
Sbjct: 312 LVDVNVHPAKSEVRFRDPGLARGLIVSGLRHALAEAGHRASTTVAGATLGAFRPEPVGRI 371

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +     +         +  +     +          S     VEE  AT   LG A AQ+
Sbjct: 372 YQMDRPSPQARAL--AYSAQAPGFADMAEDWSARVESAPEPQVEEPPATALPLGAARAQV 429

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYII+QT  G+VIVDQHAAHERL++E++++    + + +Q LL PEI+DL E +CAL+
Sbjct: 430 HENYIIAQTETGMVIVDQHAAHERLVYERLKRQMAESGVAAQALLIPEIVDLSEADCALL 489

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           MEH E L  LG+  E FGP ++A+RE PAIL   N   LLRDI+DE+ D   + TL+ RI
Sbjct: 490 MEHAEALAGLGLGIEPFGPGSLAVRETPAILGPVNAGALLRDILDELQDQGASGTLKLRI 549

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + IL+ +AC+GS+RSGR+M + EMN LLR+ME+ P S QCNHGRPT+++L+LSDIE+LFG
Sbjct: 550 DAILSRVACHGSVRSGRRMSAEEMNALLRKMERTPMSGQCNHGRPTYVELRLSDIERLFG 609

Query: 594 R 594
           R
Sbjct: 610 R 610


>gi|329895360|ref|ZP_08270985.1| DNA mismatch repair protein MutL [gamma proteobacterium IMCC3088]
 gi|328922373|gb|EGG29717.1| DNA mismatch repair protein MutL [gamma proteobacterium IMCC3088]
          Length = 606

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 212/602 (35%), Positives = 341/602 (56%), Gaps = 9/602 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  +KE++ENSLDA ++R++  + GGG    ++ DNG 
Sbjct: 3   RIHSLSPQLANQIAAGEVVERPASVVKEVVENSLDAGATRIDIEVEGGGVKRIRVRDNGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S+++P+A+ RH TSKI   DD   + + GFRGEAL SI +VS L L +    + +  
Sbjct: 63  GIESDDLPLALARHATSKIVSLDDLEAVSSLGFRGEALASIASVSRLALSTNASSDASAG 122

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            +A S   +++ +VRP     GT V+VRDLFF  PAR  FL++E+ E N + +V++R+A+
Sbjct: 123 VLAESEGRDQVVAVRPTPHPQGTTVDVRDLFFNTPARRKFLRTEKTEFNHLEEVVKRLAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F+ S        +    +      R++ + G  FI+  V ++ + + + L G+ 
Sbjct: 183 ARFDVAFSLSHNGRVVLNLPVADSTAAQQRRVATICGPAFIDQVVHIDSERSGLGLSGWV 242

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R  A+  Y F+NGR ++DK +   I+ AY + +  GR+P  VL L I+P  VDV
Sbjct: 243 GLPTFSRSQADLQYFFVNGRVIRDKLVAHAIKQAYRDVLYHGRHPAFVLYLTINPALVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---SSVLSKKMISSFHQDNAPKTH 354
           NVHP K  +RFR+   + NF+  ++ +A+     +    SS   + +    H D      
Sbjct: 303 NVHPTKHEVRFRDSREVHNFLFSTLHRALADVRPADQLVSSERFQPLAEGGHLDTHTGEV 362

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--SEATHYQLGIACAQ 412
                +    +        NR S   +             P+ E  SE     LG A AQ
Sbjct: 363 SQGALSWGGMSHRPDVGSSNRPSPLAVQSQMSSYGRLHPVPLPEQSSEEEAPPLGYALAQ 422

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +   YI+S+   GLV+VD HAAHER+ +E++++   S  + SQ LL P+ I + + E  L
Sbjct: 423 LQGIYILSENAQGLVLVDMHAAHERITYERLKEADASEGVRSQPLLVPQAIAVSQKEVEL 482

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
             EH+     LG++ E     ++ IR +P +L   ++ QL+RD++ ++ +   +  +   
Sbjct: 483 AREHEAVFVGLGLQLEPASEESLLIRSVPTLLRSADMEQLVRDVLSDLAEYGQSDRIAAE 542

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E IL+TMAC+GS+R+ R +   EMN LLR++E    + QCNHGRPT+ +L L++++KLF
Sbjct: 543 REAILSTMACHGSVRANRSLTIPEMNALLRDIEATERAGQCNHGRPTWTQLSLTELDKLF 602

Query: 593 GR 594
            R
Sbjct: 603 LR 604


>gi|146278965|ref|YP_001169124.1| DNA mismatch repair protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557206|gb|ABP71819.1| DNA mismatch repair protein MutL [Rhodobacter sphaeroides ATCC
           17025]
          Length = 612

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 257/602 (42%), Positives = 381/602 (63%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA + RV   IA GGK+  ++TD+G G
Sbjct: 15  IRQLDEAAINRIAAGEVVERPASAVKELVENALDAGARRVSVDIADGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT+E++P+A+ RH TSKI   D  +I +FGFRGEALPS+ AV  LT+ SR      GA +
Sbjct: 75  MTAEDLPLALSRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTMTSRVAGGE-GAAV 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +S  ++  VRP A+  GT+VE+RDLFF  PARL FL++++ ET  I +V+RR+A+A P+
Sbjct: 134 TVSAGRMEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVVRRLALAEPE 193

Query: 182 VSFTFSTI--KSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQG 235
           V FT +       R     ++  G+       R+++V+G DF  NA+ ++     + LQG
Sbjct: 194 VGFTLTDHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGADFAENALRIDVAREGLRLQG 253

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG+A   ++F+NGR V D+ +L  +R  Y + +   RYP  VL L  DP++V
Sbjct: 254 YAALPTYSRGSAVAQFLFVNGRPVLDRMLLGALRAGYMDVLSRDRYPAAVLNLICDPQRV 313

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR    +R  I+ ++++A+   G   S+ ++ + + +F  + A     
Sbjct: 314 DVNVHPAKAEVRFRESGEVRGLIVTALRQALAGAGHRASTTVAGETLEAFRPEAAAPPAA 373

Query: 356 PKYA---TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
             Y     S  +       Q  + +   L  +      E      E       LG A AQ
Sbjct: 374 RIYQMDRPSAASVARSFAFQAPQAAMPGLAEAPAARVEEAPVDAAE----DRPLGAARAQ 429

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH N+I++QT  GLVIVDQHAAHERL++E++++  +   I  Q LL PEI++L   + A 
Sbjct: 430 IHGNWILAQTARGLVIVDQHAAHERLVYERLKRQRDGAGIARQVLLIPEIVELSPSDAAR 489

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++E  ++L  LG+  E FG  A+A+RE+PAIL K     LLRDI+D++ D  ++  LQ R
Sbjct: 490 LLEAADELAALGLVLEPFGGGAVAVREVPAILGKVEAAPLLRDILDDLADLGSSDRLQAR 549

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           ++ +L+ MAC+GS+RSGR +++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LF
Sbjct: 550 MDAVLSRMACHGSVRSGRALRAEEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLF 609

Query: 593 GR 594
           GR
Sbjct: 610 GR 611


>gi|254477379|ref|ZP_05090765.1| DNA mismatch repair protein MutL [Ruegeria sp. R11]
 gi|214031622|gb|EEB72457.1| DNA mismatch repair protein MutL [Ruegeria sp. R11]
          Length = 649

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 260/634 (41%), Positives = 386/634 (60%), Gaps = 43/634 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++TD+G G
Sbjct: 16  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGATRITIDIADGGKTLIRVTDDGCG 75

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR   ++  AQI
Sbjct: 76  MTPDDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAAGHD-AAQI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG K+  V+P A+  GT+VE+RDLF+  PARL F++S++ E+  I DVI+R+A+A P 
Sbjct: 135 RVSGGKLEPVKPAALRGGTVVELRDLFYATPARLKFMRSDRAESQAIGDVIKRLAMAEPS 194

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R        +G+  +    R++ V+G +F  NA++++     I L 
Sbjct: 195 VGFTLRDVSGGGDGRVTFRADPLSGDLFDALHGRLAAVLGREFAENALKIDASREGIRLY 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L ++ DP  
Sbjct: 255 GYAALPTYSRGAAVAQFLFVNTRPVKDKMLTGALRAAYFDFLSRDRHPAAALFIDCDPTL 314

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ S++ A+ + G   SS ++   + +   +    T 
Sbjct: 315 VDVNVHPAKSEVRFRDPGLARGLIVSSLRHALAEAGHRASSTVAGATLGAMRPEQPTATG 374

Query: 355 LPKY---------ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY---------------- 389
            P+          A SL+   +  +  +          +   +                 
Sbjct: 375 APRVYQMDRPSMGARSLSYAAQAPYRADGAPVPQGDDNAPGFSEFASAYSGRVIDAPAPP 434

Query: 390 ---------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                     ED     E  A    LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++
Sbjct: 435 HPAMAGQAVQEDQPEPPEQRAEELPLGAARGQVHENYIIAQTRDGMVIVDQHAAHERLVY 494

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           EK+++      + +Q LL P+I++L E +CA ++   ++L + G+  E FG  A+A+RE 
Sbjct: 495 EKLKRQMAENGVAAQALLIPDIVELSENDCARLLSVADELQKFGLGIEAFGGGAVAVRET 554

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PAIL   N   ++RDI+DE+ D   +  +Q +IE IL+ +AC+GSIRSGR M+  EMN L
Sbjct: 555 PAILGTVNAEAMVRDILDELDDQGESQLVQAKIEAILSRVACHGSIRSGRWMRGEEMNAL 614

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LREME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 615 LREMEATPHSGQCNHGRPTYVELKLADIERLFGR 648


>gi|254427517|ref|ZP_05041224.1| DNA mismatch repair protein MutL [Alcanivorax sp. DG881]
 gi|196193686|gb|EDX88645.1| DNA mismatch repair protein MutL [Alcanivorax sp. DG881]
          Length = 622

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 203/618 (32%), Positives = 340/618 (55%), Gaps = 25/618 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L  ++ NQIAAGE++ERP+  +KEL+EN+LDA S  +   +  GG    ++ DNG 
Sbjct: 3   KIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLVRVRDNGN 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI   DD   I T GFRGEAL +I +VS L+L S       G 
Sbjct: 63  GIERDDLPLALSRHATSKIRGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEAEGW 122

Query: 120 QIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+ + G  ++    P     GT V +RDLFF  PAR  FL++E+ E N + +V RR+A++
Sbjct: 123 QVTVEGRDMAPTVAPAGHPRGTTVTMRDLFFNTPARRRFLRTEKTEFNHLEEVFRRIALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
               +F  +  +   +++     +     R++++ G+ F+  AV ++ + + + L G+ G
Sbjct: 183 EFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFMEQAVAVDVERDGLRLHGWMG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR ++DK +   +R AYA+ +  GR+P  VL LE+DP  VDVN
Sbjct: 243 LPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYADVLYHGRHPAYVLFLELDPAMVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-----------GISTSSVLSKKMISSFHQ 347
           VHP K  +RFR   ++  F+  S+ +AI                  ++      ++    
Sbjct: 303 VHPTKHEVRFREQRMVHGFLYSSLHRAIAGVRPGQELAGSVVDEGATAAGMDTAMAPSQG 362

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQ----------ENRLSTNDLLPSDDPTYSEDNDPVE 397
           + +  +      +SL+    + +              +      L     + S  +    
Sbjct: 363 NMSLTSPAGAGMSSLSRPAGQAYPPTGGSAFYGQGARQADAYGALVGQQVSESAPSMMPP 422

Query: 398 ESE-ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            SE  T   LG A AQ+H  +I+++   G+V+VD HAAHER+ +E+++Q +   K+ SQ 
Sbjct: 423 ASEDETVPPLGYAVAQLHGIFILAENQQGMVVVDMHAAHERITYERLKQSWADDKVRSQP 482

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P  + +   E     +  E   RLG   ER GP  + +RE+PA+L   +   ++RD+
Sbjct: 483 LLVPVSLAVSSREADFAEQQPEVFSRLGFGVERAGPETLVVREVPALLRNGDSESMVRDV 542

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + +++   ++  +  +++ +L+TMAC+GS+R+ R++   EMN LLR+ME    S QCNHG
Sbjct: 543 LSDLLAQGSSERIAQKLDELLSTMACHGSVRANRRLTIPEMNALLRDMEATERSGQCNHG 602

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ ++ + D+++LF R
Sbjct: 603 RPTWTQMSIKDLDRLFMR 620


>gi|225686071|ref|YP_002734043.1| DNA mismatch repair protein [Brucella melitensis ATCC 23457]
 gi|256262806|ref|ZP_05465338.1| DNA mismatch repair protein [Brucella melitensis bv. 2 str. 63/9]
 gi|254766161|sp|C0RKF6|MUTL_BRUMB RecName: Full=DNA mismatch repair protein mutL
 gi|225642176|gb|ACO02089.1| DNA mismatch repair protein MutL [Brucella melitensis ATCC 23457]
 gi|263092627|gb|EEZ16848.1| DNA mismatch repair protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326410397|gb|ADZ67461.1| DNA mismatch repair protein [Brucella melitensis M28]
          Length = 623

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 395/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDP--------------------------TYSED 392
           A S +    +      R   +                                  + +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAQTAHRPLDLQAAPALRENGQAVLGDVAVPASDARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|304311527|ref|YP_003811125.1| DNA mismatch repair enzyme (predicted ATPase) [gamma
           proteobacterium HdN1]
 gi|301797260|emb|CBL45480.1| DNA mismatch repair enzyme (predicted ATPase) [gamma
           proteobacterium HdN1]
          Length = 646

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 209/642 (32%), Positives = 352/642 (54%), Gaps = 49/642 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L  ++ NQIAAGE++ERP+  +KEL+EN+LDA ++R++  +  GG    ++ DNG 
Sbjct: 3   RIELLPPRLANQIAAGEVVERPASVLKELLENALDAGATRIDIDVEEGGVKLIRVRDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI   +D   + T GFRGEAL SI +VS L L +   +N TG 
Sbjct: 63  GIPKDEMPLALARHATSKIHQIEDLEGVVTLGFRGEALASIASVSRLQLSASDNENGTGW 122

Query: 120 QIAISGEKISSVRPVA-MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++   G+ ++++        GT +EV DLFF  PAR  FL++E+ E N + +V R++A++
Sbjct: 123 RVETEGQDMAAMVSATAHPRGTTLEVHDLFFNTPARRKFLRAEKTEFNHLEEVFRKLALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           + +  F+      N +++   ++      RI+ ++G  F+ NAV +     ++ L G+ G
Sbjct: 183 HFETGFSLRHNGRNLHQLKPATSELEQDRRIASLLGSVFVENAVRVEVAIGDLRLWGWMG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR ++DK +   +R AY + +   R+P  VL  E+DPR VDVN
Sbjct: 243 LPTFSRAQADCQYFFVNGRVIRDKVVNHAVRQAYRDVLYHDRHPAYVLFFELDPRMVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------------ 340
           VHP K  +RFR    + +F+ +S+ +AI +   ++++  ++                   
Sbjct: 303 VHPTKHEVRFRESRQVHDFLYRSLHRAIAEITPASATPAAQSGMAGQAPLSASEIPFGAN 362

Query: 341 ----------MISSFHQDNAPKTHLPKYAT------------------SLTNTQEKLFLQ 372
                     ++ +      P   +P  +                   S    +      
Sbjct: 363 ANANVDHSGMLLGASSAAYIPSGFVPNPSALPDQAAPQQTVLPIGIGGSWQAPRRDSGNS 422

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
              ++    L        E+       E     LG A AQ+H  +I++Q  +GL++VD H
Sbjct: 423 YRAMAGYQALHPLPEQSPENTLTPSVREGEIPPLGFALAQLHGVFILAQNQNGLIVVDMH 482

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHER+ +E+M+Q +   ++ SQTLL P    + + E  LI E  E   RLG + ER GP
Sbjct: 483 AAHERITYERMKQTWAEDRLRSQTLLVPIGFAVSQREADLIDEMPETFTRLGFRIERVGP 542

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
            ++ +R++PA+L++  +  L+RD++ +++    +  +++ I  +L TMAC+GS+R+ R++
Sbjct: 543 ESLLVRDVPALLAECRVESLVRDVLGDLLVHGNSQRIEEHINALLGTMACHGSVRANRQL 602

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +EMN LLR+ME    S QCNHGRPT++ L L +++KLF R
Sbjct: 603 SLMEMNALLRDMEATERSGQCNHGRPTWVSLSLKELDKLFLR 644


>gi|304393197|ref|ZP_07375125.1| DNA mismatch repair protein MutL [Ahrensia sp. R2A130]
 gi|303294204|gb|EFL88576.1| DNA mismatch repair protein MutL [Ahrensia sp. R2A130]
          Length = 620

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 263/619 (42%), Positives = 393/619 (63%), Gaps = 25/619 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+NQIAAGE++ERP+  ++EL++N++DA + R++ VIA GGK   ++TD+G
Sbjct: 1   MPVRRLHETIVNQIAAGEVVERPASVVRELLDNAIDAGAKRIDLVIASGGKGLIRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM ++++ +AV+RHCTSK++DD  +IHT GFRGEALPSIG+VS LT+ +R   +++G +
Sbjct: 61  RGMDADDLALAVERHCTSKLTDDLLDIHTLGFRGEALPSIGSVSRLTIRTRQDGSDSGYE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI+ VRP A N GT+VEV DLF+  PARL FLK+E+ ET  I DV+RR A+A+P
Sbjct: 121 ISVDGGKITQVRPAAFNRGTVVEVADLFYATPARLKFLKTERAETTAILDVLRRAALAHP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F+                +  +  R  QV+G DF  NA+ ++ +   + L G   +P
Sbjct: 181 EIHFSLGGPDRQPVDHPAAQGDDAWLHRARQVLGVDFAENALTIDAEREGVRLTGLAALP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGNA   +V +NGR+V+D+ +   IR AY + +  GR+P+V L + I+P  VDVNVH
Sbjct: 241 TFNRGNALSQFVTVNGRSVKDRQLTGAIRGAYMDHLARGRHPMVSLDIAIEPELVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ ++++AI   G   SS     M+++F      +  +   A 
Sbjct: 301 PAKSEVRFRDPGLVRGLIVGALRQAIEAAGHRASSRGGVDMMAAFTPGGLGEQAVRAAAG 360

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND----PVEESEATHYQLGIA------- 409
            L       F Q    S  +       + +         ++E+ AT    G         
Sbjct: 361 GLAENAAGHFDQTGYTSPGNANHDWQQSPNRPVQAGPIGLQEAPATFDMTGAPSADQRPS 420

Query: 410 --------------CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                          AQ+H+NYII+QT  GLVIVDQHAAHERL++E+M+       + +Q
Sbjct: 421 ENTDTYLANPLGAARAQVHENYIIAQTEGGLVIVDQHAAHERLVYERMKAQIAEKGVEAQ 480

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P+I+DL E + A +++H  +L +LG+  E FGP  +A+RE P +L + N   LL+D
Sbjct: 481 MLLIPQIVDLAEDDAARLLDHSVELAQLGLCFEEFGPGTLAVRETPTLLGEVNAAALLQD 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           + DEI +  T  T+++RI+++ ATMAC+GS+RSGR+++  EM+ LLR+ME  PNS QCNH
Sbjct: 541 LADEIAEWGTATTVRERIDHVAATMACHGSVRSGRRLRPQEMDALLRDMEATPNSGQCNH 600

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+++LKLSDIE+LFGR
Sbjct: 601 GRPTYVELKLSDIERLFGR 619


>gi|84515075|ref|ZP_01002438.1| DNA mismatch repair protein [Loktanella vestfoldensis SKA53]
 gi|84511234|gb|EAQ07688.1| DNA mismatch repair protein [Loktanella vestfoldensis SKA53]
          Length = 607

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/599 (43%), Positives = 387/599 (64%), Gaps = 17/599 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+ENS+DA + R+E VIA GGK+  +++D+G G
Sbjct: 18  IRQLDEAAINRIAAGEVLERPASAVKELVENSIDAGAQRIEVVIADGGKTLIRVSDDGCG 77

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M ++++P+A+ RH TSKI   D  NI +FGFRGEAL S+GAV  L + SR P +     I
Sbjct: 78  MAADDLPLALSRHATSKIDGSDLLNITSFGFRGEALASLGAVGRLLITSRTPGDG-AHSI 136

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A+SG +IS VRP A+  GT+VE+RD+F+  PARL FL++++ E   +TDV++R+A+A P 
Sbjct: 137 AVSGGRISDVRPAALTSGTVVELRDMFYATPARLKFLRTDRAEAQAVTDVVKRLAMAEPF 196

Query: 182 VSFTFS--TIKSNRYKMNFQSTNGNFPERIS----QVIGEDFINNAVELNEKSNEITLQG 235
           V+F     +    R      +  G+  + +      V+G DF +NA+ ++ + +   L G
Sbjct: 197 VTFILRDASDGDTRVVFRADAQTGDLFDALHGRLQTVLGRDFADNALRIDAERDGFHLTG 256

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG A   ++F+NGR V+DK +L  +R AY + +   R+PV  L ++ DP  V
Sbjct: 257 YAALPTYSRGAAVAQFLFVNGRPVRDKMLLGALRAAYMDVLSRDRHPVAALFVDCDPMLV 316

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAKS +RFR+P ++R  I+  ++ A+   G   SS ++   + +           
Sbjct: 317 DVNVHPAKSEVRFRDPGVVRGLIVSGLRHALAGAGHRASSTVADATLGAME--------- 367

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P++AT      ++       L+     P      S   +P  +  +    LG A AQ+H+
Sbjct: 368 PQHATPRVYQMDRPSFSARSLTFQAQAPGFAEMPSARVEPPADDTSADLPLGAARAQVHE 427

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           NYII+QT  G+VIVD HAAHERL++EK++    +  + +Q LL PEI++L + E A +++
Sbjct: 428 NYIIAQTATGIVIVDGHAAHERLVYEKLKSQMATNGVAAQALLIPEIVELSDHETAALLD 487

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             +DL RLG+  E FG NAIA+RE PAIL + N   +LRDI DE+ D   + ++Q RIE 
Sbjct: 488 IADDLARLGLTIEPFGGNAIAVRETPAILGEINAAAMLRDISDELADQGDSASVQARIEA 547

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           IL+ +AC+GSIR+GR+MQ+ EMN LLREME  P+S QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 548 ILSRVACHGSIRTGRRMQAAEMNALLREMEATPHSGQCNHGRPTYVELKLSDIERLFGR 606


>gi|254516807|ref|ZP_05128865.1| DNA mismatch repair protein MutL [gamma proteobacterium NOR5-3]
 gi|219674312|gb|EED30680.1| DNA mismatch repair protein MutL [gamma proteobacterium NOR5-3]
          Length = 624

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/622 (34%), Positives = 346/622 (55%), Gaps = 28/622 (4%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I++L  ++ NQIAAGE++ERP+  +KEL+ENSLDA + RV+  I   G    ++ DN
Sbjct: 1   MPVIKRLPARLANQIAAGEVVERPASVVKELLENSLDAGALRVDIDIEAAGTKLIRVRDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           GFG+++E++P+A+ RH TSKI   DD   + +FGFRGEAL SIG+VSHL + S   +  +
Sbjct: 61  GFGISAEDLPLALDRHATSKIGSLDDLEQVGSFGFRGEALASIGSVSHLIVTSNTAEAGS 120

Query: 118 -GAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                + SG  +    +P A   GT VEVRDLFF  PAR  FL++E+ E N + DV++R+
Sbjct: 121 EAHSASCSGRDMQVTLKPAAHPQGTTVEVRDLFFNTPARRKFLRTERTEFNHLDDVVKRL 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A++   VSF           +       +   R++ + G  F+ +AV ++  + E+ L G
Sbjct: 181 ALSRFDVSFGLRHNGRQLQDLRRCDDEADRLRRVALLCGPGFVEHAVAIDRDATELRLHG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +   P+F+R  A+  + ++NGR ++DK +   +R A+++ +  GR+P  VL LE+DP +V
Sbjct: 241 WVAQPSFSRSQADLQHFYVNGRYIRDKLVAHAVRQAFSDVLYQGRHPAFVLYLELDPAEV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-------------------- 335
           DVNVHP K  +RFR+   + +FI  ++ KA+     S +S                    
Sbjct: 301 DVNVHPTKHEVRFRDGRSVHSFIYSTLHKALADIRPSDTSMPAQASSSPVSASAGRLDLL 360

Query: 336 --VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
              L ++      +  A  T +     S  + Q          +            +E  
Sbjct: 361 TGELVRQREMGLVEQGAGTTAVFSEHGSRGDFQSGRGSSTGFDAATAASYQQLYGSAEGR 420

Query: 394 DPVEESEATHYQL-GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           + V E +A      G A AQ+H  YI++Q  +GLV+VD HAAHER+ +E+++Q  +   I
Sbjct: 421 NGVAEGDAAEVPPLGYALAQLHGVYILAQNREGLVLVDMHAAHERITYERLKQARDEQGI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            SQ LL P+ + +   E  L+ EH      LG++ +  G  ++ IREIP  L   N+ +L
Sbjct: 481 RSQPLLVPQSVSVSSREALLLEEHASLFQSLGLRVDIAGEESLIIREIPVSLQGANVEEL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           LRD++ ++++  T+  +    + +L+TMAC+GS+R+ R++   EMN LLR+ME    S Q
Sbjct: 541 LRDVLADLLEYGTSERIARHEDELLSTMACHGSVRANRRLTVPEMNALLRDMEITERSGQ 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+  L + ++++LF R
Sbjct: 601 CNHGRPTWTSLSVQELDRLFLR 622


>gi|306845535|ref|ZP_07478104.1| DNA mismatch repair protein MutL [Brucella sp. BO1]
 gi|306273856|gb|EFM55683.1| DNA mismatch repair protein MutL [Brucella sp. BO1]
          Length = 623

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 271/622 (43%), Positives = 392/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SR    ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRSQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--------------------- 397
           A S +    +      R   +           +                           
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPAFRENEQAVLGDVAVPAADARA 420

Query: 398 -----ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                  E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEVPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|114763561|ref|ZP_01442966.1| DNA mismatch repair protein [Pelagibaca bermudensis HTCC2601]
 gi|114543841|gb|EAU46853.1| DNA mismatch repair protein [Roseovarius sp. HTCC2601]
          Length = 621

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 260/621 (41%), Positives = 399/621 (64%), Gaps = 28/621 (4%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M+  IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + RV   +A GGK+  ++TD
Sbjct: 1   MRPIIRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGARRVTIELADGGKTLIRVTD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           +G GM+++E+P+A+ RH TSKI   D  NIH+FGFRGEALPS+GAV  LT+ SR      
Sbjct: 61  DGCGMSADELPLALSRHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTIQSRASGEE- 119

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            A+IA++G ++++V+P A+N GT+V +RDLFF  PARL FL+S++ E   I++VI+R+A+
Sbjct: 120 AAEIAVAGGQMAAVKPCALNGGTVVTLRDLFFATPARLKFLRSDRAEMQAISEVIKRLAM 179

Query: 178 AYPKVSFTFS--TIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEI 231
           A P V FT    +   +R        +G+  +    R++QV+G +F +NA+ ++ +    
Sbjct: 180 AEPSVGFTLRDVSEGKDRTTFRADPCSGDLFDALRGRLAQVMGAEFTDNALNIDAEREGF 239

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L G   +PT++RG++   ++F+NGR VQD+ +L  +R AYA+ +   R+P V L ++ D
Sbjct: 240 RLTGLAALPTYSRGSSVAQHLFVNGRPVQDRLLLGALRGAYADYLSRERHPAVALFVDCD 299

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P +VDVNVHPAKS +RFR P ++R  I+ +++ A+ + G   S+ ++   + +   + + 
Sbjct: 300 PHKVDVNVHPAKSEVRFREPGLVRGLIVSALRHALAEAGHRASTTVAGATLGAMRPEPSG 359

Query: 352 KTHLPK---------------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
              + +                A        + F  +              ++S   DPV
Sbjct: 360 PPRVYQMDRPSQGALSSAYRAQAPMTPAEPYQPFEAQAPRPAETGFAEFAGSFSGRVDPV 419

Query: 397 EESEATHYQL---GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
           EES     +    G A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK++       + 
Sbjct: 420 EESPQGSDETLPLGAARGQVHENYIIAQTGDGIVIVDQHAAHERLVYEKLKHQMAERGVA 479

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           +Q LL PEI++L   + + ++   +DL R+G+  E FG +A+A+RE PAIL + N   LL
Sbjct: 480 AQALLIPEIVELSADDLSRLLSIADDLSRMGLTIEAFGGSAVAVRETPAILGEVNAKALL 539

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            DI+DEI D  ++  +Q++IE IL+ +AC+GSIRSGR+M++ EMN LLREME  P+S QC
Sbjct: 540 TDILDEIADFGSSQLVQEKIEAILSRVACHGSIRSGRRMRAEEMNALLREMEATPHSGQC 599

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+++LKLSDIE+LFGR
Sbjct: 600 NHGRPTYVELKLSDIERLFGR 620


>gi|254524173|ref|ZP_05136228.1| DNA mismatch repair protein MutL [Stenotrophomonas sp. SKA14]
 gi|219721764|gb|EED40289.1| DNA mismatch repair protein MutL [Stenotrophomonas sp. SKA14]
          Length = 634

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 221/626 (35%), Positives = 348/626 (55%), Gaps = 35/626 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L + +INQIAAGE++ERP+  +KEL+EN++DA +SRV+  +  GG    +I DNG 
Sbjct: 9   PIRPLPDILINQIAAGEVVERPASVVKELVENAIDAGASRVDIDLEEGGVRLIRIRDNGS 68

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+AV RH TSKI+D  D  ++ T GFRGEALPSI +VS  TL SR   +  G+
Sbjct: 69  GIAPEQLPLAVSRHATSKIADLDDLESVATLGFRGEALPSIASVSRFTLASRRAHDEHGS 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G KI  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I + +R +A+A 
Sbjct: 129 ALQIEGGKIGEVTPRAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALAR 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V    S       +        +    +++ +GEDF N AV ++     + L G+   
Sbjct: 189 PDVELRVSHNGKASRRYKPGDLYSDAR--LAETLGEDFANQAVRVDHSGAGLRLHGWIAQ 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P ++R +A+Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVNV
Sbjct: 247 PHYSRASADQQYLYVNGRSVRDRSVAHAVKMAYGDVLYHGRQPAYVLFLELDPTRVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI---------NKKGISTSSVLSKKMISSFHQDNA 350
           HPAK  +RFR+  ++ +F+ ++++ A+          + G   +  +            A
Sbjct: 307 HPAKHEVRFRDSRLVHDFVYRTLKDALADTRAGMSAQEIGALPAHPVDAATTPMASSAGA 366

Query: 351 PKTHLPKYATSLT-----------NTQEKLFLQ-----------ENRLSTNDLLPSDDPT 388
               L +     +             Q+ L LQ               S  +   +  P 
Sbjct: 367 SGFGLVRGPAPGSGSGGGGGFSGWRPQQPLGLQVADAPAAYAALYAAPSGAERGATLPPM 426

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            SE+  PV  ++A    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +
Sbjct: 427 PSENGLPVTSADAGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAHD 486

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
              + SQ LL P  + + E E        E L  LG +  R GP A+ +R IPA+L+   
Sbjct: 487 GIGLQSQPLLVPITLAVGEREADTAESEAETLAALGFEVTRAGPGALHVRSIPALLAHAE 546

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME   
Sbjct: 547 PEGLLRDVLTDLREHGQSRRVASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEITE 606

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S QCNHGRPT+ +  L++I++ F R
Sbjct: 607 RSGQCNHGRPTWARFSLAEIDRWFLR 632


>gi|163745482|ref|ZP_02152842.1| DNA mismatch repair protein [Oceanibulbus indolifex HEL-45]
 gi|161382300|gb|EDQ06709.1| DNA mismatch repair protein [Oceanibulbus indolifex HEL-45]
          Length = 623

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 253/609 (41%), Positives = 380/609 (62%), Gaps = 18/609 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + R+    A GGK+  ++TD+G G
Sbjct: 15  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGARRITVEYADGGKTMIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  +++ +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR      GA+I
Sbjct: 75  IAPDDLALALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAAGFE-GAEI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G ++   RP A+N GTIV +RDLFF  PARL FL++++ E   I DVI+R+A+A P 
Sbjct: 134 TVDGGRMGEARPAALNSGTIVTLRDLFFATPARLKFLRTDRAEAQAIGDVIKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V F     S     R     ++  G+  E    R++QV+G +F  N++ ++     + L 
Sbjct: 194 VRFVLRDVSGDGKGRDVFRAEAEQGDLFEALHGRLAQVLGREFAENSLPIDAMREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+  +PT++RG+A   Y+F+NGR V+DK +   +R AY++ +   R+P   L +E  P  
Sbjct: 254 GFAALPTYSRGSAVAQYLFVNGRPVRDKLLTGALRGAYSDFLSRDRHPAAALFVECPPTL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT- 353
           VDVNVHPAKS +RFR+P + R  I+ +++ A+ + G   S+ +++  + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGLARGLIVSALRHALAEAGHRASTTVAQATLGAMQPEPQGARV 373

Query: 354 --------HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
                     P  A      + +             +       +   +   E+ A  Y 
Sbjct: 374 YQMDRAGMDRPSPAARQAAYEAQAPGFAETAGVWGRVEGTPMPAAPVVEEASEAPAPDYP 433

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           LG A  Q+H+NYII+QT +G+VIVDQHAAHERL++EK+++  N   + +Q LL PEI++L
Sbjct: 434 LGTARGQVHENYIIAQTANGMVIVDQHAAHERLVYEKLKRQMNDNGVAAQALLIPEIVEL 493

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              +CA ++E  +DL +LG+  E FG +AIA+RE PAIL   N   L+ D++DE+ D  +
Sbjct: 494 SANDCARLLELADDLAKLGLGIEAFGGSAIAVRETPAILGTVNARALILDVLDELADGDS 553

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           +  +Q +IE IL+ +AC+GSIRSGR M++ EMN LLREME  P+S QCNHGRPT+++LKL
Sbjct: 554 SNIVQAKIEAILSRVACHGSIRSGRWMRAEEMNALLREMEATPHSGQCNHGRPTYVELKL 613

Query: 586 SDIEKLFGR 594
           +DIE+LFGR
Sbjct: 614 ADIERLFGR 622


>gi|260166999|ref|ZP_05753810.1| DNA mismatch repair protein [Brucella sp. F5/99]
 gi|261756386|ref|ZP_06000095.1| DNA mismatch repair protein mutL [Brucella sp. F5/99]
 gi|261736370|gb|EEY24366.1| DNA mismatch repair protein mutL [Brucella sp. F5/99]
          Length = 623

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/622 (43%), Positives = 394/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--------------------------SED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQMLLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLDEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|197106626|ref|YP_002132003.1| DNA mismatch repair protein MutL [Phenylobacterium zucineum HLK1]
 gi|238690138|sp|B4RA70|MUTL_PHEZH RecName: Full=DNA mismatch repair protein mutL
 gi|196480046|gb|ACG79574.1| DNA mismatch repair protein MutL [Phenylobacterium zucineum HLK1]
          Length = 622

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/621 (38%), Positives = 370/621 (59%), Gaps = 27/621 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L  ++IN+IAAGE++ERP+ A+KEL+EN+LDA ++++E    GGG +   + D+G
Sbjct: 1   MPIRRLPPELINRIAAGEVVERPASAVKELVENALDAGATKIEVQADGGGLTRILVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD------DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            G+++EE+P+AV+RH TSK++       D   I T GFRGEALPSIG+V+ L++ SR  +
Sbjct: 61  CGLSAEELPVAVERHATSKLNPGEDGEYDLLRIGTLGFRGEALPSIGSVARLSIASRARK 120

Query: 115 NNTGAQIAISGEKI------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
            +     A +           S        G  VEVRDLF+  PARL F+KSE+ E   I
Sbjct: 121 ADGSQAEAHAIFVEGGAVGAVSPAAFPGPHGARVEVRDLFYATPARLKFMKSERAEALAI 180

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEK 227
           T+ ++R A+A+  VSF          ++  ++   +    R+S ++G +F +NA+ ++ +
Sbjct: 181 TEELKRQAMAHEAVSFALDVDGRRTLRLPAEAAGPDGRLARLSAIMGREFSDNALAIDHE 240

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
              + L G+ G+PTFNRGNA   Y+F+NGR V+D+ +   +R AYA+ +   R+P+  L 
Sbjct: 241 REGVRLSGFAGLPTFNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHPLAALY 300

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH- 346
           +E+DP QVDVNVHPAK+ +RFR+P ++R  I+  ++ A+   G   S+ +S   +  F  
Sbjct: 301 VELDPSQVDVNVHPAKAEVRFRDPGLVRGLIVGGLRHALAAAGHRASTTVSMAALGGFRP 360

Query: 347 -------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                                 P  A +       L     R     L        +E  
Sbjct: 361 QSMPPPQPSAAGFSAWRQGGWTPSPAAAAAQILPGLSEVSARAEPEALDAYAAGGMAEAA 420

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
            P    +   Y LG A AQ+H+ YI++QT DG+VIVDQHAAHERL++E+M+ +     + 
Sbjct: 421 SPAPVFDPVDYPLGAARAQVHETYIVAQTRDGVVIVDQHAAHERLVYERMKAEMAEGGVA 480

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL PE+++L   E   ++   ++L  LG+  E FGP A+ +RE+PA+L + +   L+
Sbjct: 481 RQALLLPEVVELDPAEAERVVARADELAALGLVVEAFGPGAVLVREVPALLGETDAAGLV 540

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           RDI D++ ++     L++R+E +  TMAC+GS+R+GR++ + EMN LLR+ME  P+S QC
Sbjct: 541 RDIADDLSENGQALALKERLEEVCGTMACHGSVRAGRRLTAPEMNALLRQMEATPHSGQC 600

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+++LKL+DIE+LFGR
Sbjct: 601 NHGRPTYVELKLADIERLFGR 621


>gi|15964569|ref|NP_384922.1| DNA mismatch repair protein [Sinorhizobium meliloti 1021]
 gi|307309315|ref|ZP_07588978.1| DNA mismatch repair protein MutL [Sinorhizobium meliloti BL225C]
 gi|307320051|ref|ZP_07599472.1| DNA mismatch repair protein MutL [Sinorhizobium meliloti AK83]
 gi|20455110|sp|Q92RP4|MUTL_RHIME RecName: Full=DNA mismatch repair protein mutL
 gi|15073747|emb|CAC45388.1| Probable DNA mismatch repair protein [Sinorhizobium meliloti 1021]
 gi|306894266|gb|EFN25031.1| DNA mismatch repair protein MutL [Sinorhizobium meliloti AK83]
 gi|306900184|gb|EFN30802.1| DNA mismatch repair protein MutL [Sinorhizobium meliloti BL225C]
          Length = 605

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 286/606 (47%), Positives = 409/606 (67%), Gaps = 14/606 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  ++TDNG
Sbjct: 1   MAIKQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM+  ++ +A++RHCTSK++D  ++I T GFRGEALPSIG+V+ L++ +R  +   GA 
Sbjct: 61  IGMSPADLELAIRRHCTSKLNDSLADIRTLGFRGEALPSIGSVARLSITTRTAEAREGAA 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++G +    RP A   GT+VEVRDLFF  PARL F+KSE+ E   I++V+RRMAIA+P
Sbjct: 121 ITVTGGRSEPARPSAAIVGTVVEVRDLFFATPARLKFMKSEKAEAAAISEVVRRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V F  S   S+R  + F +T  +   R++QV+G DF +NA+E++ +     L G+ G+P
Sbjct: 181 RVRFVLS--GSDRTTLEFPATGDDRLARMAQVLGRDFRDNAIEIDAEREGARLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+ Q Y F+NGR VQDK I+S +R AYAETIP GRYP+ VL + +DP  VDVNVH
Sbjct: 239 TFNRGNSLQQYAFVNGRPVQDKLIMSALRAAYAETIPQGRYPIAVLSITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV----LSKKMISSFHQDNAPKTHLP 356
           PAKS +RFR+P +IR  II +I++A+ ++G   ++     L +     FH+    +   P
Sbjct: 299 PAKSDVRFRDPGLIRGLIIGAIREALTREGDRAATTGAHGLMRAFRPEFHRAGQQRPQEP 358

Query: 357 KYATSLTNTQ------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT--HYQLGI 408
             A +  +         + F +  + + +D       + +   +    ++     + LG 
Sbjct: 359 WSAAASPHRPLRFEEAARGFAEAPQAAFSDFAQPSARSAAAAVEATRATDGQAASFPLGA 418

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H+NYI++QT DGLVIVDQHAAHERL+FE MR   ++  + +Q LL PEI+ L E 
Sbjct: 419 ARAQLHENYIVAQTDDGLVIVDQHAAHERLVFETMRTALHARPVPAQALLIPEIVGLPED 478

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           +C  +M H E+  RLG+  ERFGP A+A+RE PA+L + +   L+R + DE+ +  T   
Sbjct: 479 DCDRLMAHAEEFTRLGLAIERFGPAAVAVRETPAMLGEMDAAGLVRQLADELAEWDTASG 538

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           L  R+E + ATMAC+GS+RSGR++++ EMN LLR+ME  P S QCNHGRPT+I+LKL+DI
Sbjct: 539 LAGRLEYLAATMACHGSVRSGRRLRTEEMNALLRQMEATPGSGQCNHGRPTYIELKLADI 598

Query: 589 EKLFGR 594
           E+LFGR
Sbjct: 599 ERLFGR 604


>gi|325916959|ref|ZP_08179201.1| DNA mismatch repair protein MutL [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536810|gb|EGD08564.1| DNA mismatch repair protein MutL [Xanthomonas vesicatoria ATCC
           35937]
          Length = 623

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 224/624 (35%), Positives = 347/624 (55%), Gaps = 33/624 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIDLEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL+SR      G
Sbjct: 61  GGIPPHELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLISRRHDAQHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 AALQIEGGRLGEVTPHAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +GEDF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----------------LSKKM 341
           VHPAK  +RFR   +I +F+ +++Q A+ +     +                   L    
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAQTRAGATPNSIGNDGAGYLAAGGMGNLPGGA 358

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDL---------LPSDDPTYS 390
           ++ +            YA   T +Q  L L+  E R + + L           S  P +S
Sbjct: 359 VTPYTGTPGNGGGSGSYAN-WTPSQSPLGLRVDEARAAYSALYAPLPGSVQQSSSLPQFS 417

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
               PV   ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S 
Sbjct: 418 GTGLPVTAEDSGVPPLGYAVAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKHAHDSI 477

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            + +Q LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+     
Sbjct: 478 GLHAQPLLVPMTLAVGEREADTAEREAETLGTLGFEITRAGPQSLHVRSIPALLANAEPE 537

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    S
Sbjct: 538 ALLRDVLGDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATERS 597

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+ +  LSDI++ F R
Sbjct: 598 GQCNHGRPTWARFTLSDIDRWFLR 621


>gi|221640592|ref|YP_002526854.1| DNA mismatch repair protein [Rhodobacter sphaeroides KD131]
 gi|221161373|gb|ACM02353.1| DNA mismatch repair protein MutL [Rhodobacter sphaeroides KD131]
          Length = 616

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 256/602 (42%), Positives = 381/602 (63%), Gaps = 11/602 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA + R+   IA GGK+  ++TD+G G
Sbjct: 15  IRQLDEAAINRIAAGEVVERPASAVKELVENALDAGARRIAVDIACGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT++++P+A+ RH TSKI   D  +I +FGFRGEALPS+ AV  LT+ SR  +   GAQI
Sbjct: 75  MTADDLPLALSRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTITSRVAEGE-GAQI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A+S  +I  VRP A+  GT+VE+RDLFF  PARL FL++++ ET  I +V+RR+A+A P+
Sbjct: 134 AVSAGRIEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVVRRLALAEPE 193

Query: 182 VSFTFSTI--KSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQG 235
           V FT +       R     ++  G+       R+++V+G +F  NA+ ++     + LQG
Sbjct: 194 VGFTLTDHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGAEFAENALRIDVAREGLRLQG 253

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG+    ++F+NGR V D+ +L  +R  Y + +   RYP  VL L  DP++V
Sbjct: 254 YAALPTYSRGSGVAQFLFVNGRPVLDRMLLGALRAGYMDVLSRDRYPAAVLNLICDPQRV 313

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR    +R  I+ ++++A+   G   S+ ++ + + +F  +       
Sbjct: 314 DVNVHPAKAEVRFREAGEVRGLIVTALRQALAGAGHRASTTVAGETLEAFRPERPAAAGP 373

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHYQLGIACAQ 412
              +      +          +     P+           VE     EA    LG A AQ
Sbjct: 374 GSASRIYQMDRPSAAAVARSFAFQAPEPAMPGLAEAPAARVEAPAAEEAHDRPLGAARAQ 433

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH N+I++QT  GLVIVDQHAAHERL++EK+++  + T I  Q LL PEI++L   + A 
Sbjct: 434 IHGNWILAQTESGLVIVDQHAAHERLVYEKLKRQRDETGIARQALLIPEIVELSPTDAAR 493

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++E  ++L   G+  E FG  A+A+RE+PAIL K     LLRDI+D++ D  ++  LQ R
Sbjct: 494 LLEAADELASAGLVIEPFGGGAVAVREVPAILGKVEAAPLLRDILDDLADLGSSDRLQAR 553

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           ++ +L+ MAC+GS+RSGR +++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LF
Sbjct: 554 MDAVLSRMACHGSVRSGRALRAEEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLF 613

Query: 593 GR 594
           GR
Sbjct: 614 GR 615


>gi|119385437|ref|YP_916493.1| DNA mismatch repair protein [Paracoccus denitrificans PD1222]
 gi|119375204|gb|ABL70797.1| DNA mismatch repair protein MutL [Paracoccus denitrificans PD1222]
          Length = 606

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/601 (44%), Positives = 395/601 (65%), Gaps = 9/601 (1%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M+  IR+L E   N+IAAGE++ERP+ A+KEL+EN+LDA +SR+E  IA GGK+  +++D
Sbjct: 8   MRPIIRQLDEAAANRIAAGEVVERPASAVKELVENALDAGASRIEVAIAKGGKALIRVSD 67

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           +G GMT+E++P+A+ RH TSKI   D  +I +FGFRGEALPS+GAV  L++ SR    + 
Sbjct: 68  DGCGMTAEDLPLALARHATSKIDGSDLLDIRSFGFRGEALPSLGAVGRLSITSRAAGFD- 126

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           GAQIA++G +I  V+P A N GT+VE+RDLFF  PARL FL+S++ ET  + +VIRR+A+
Sbjct: 127 GAQIAVAGGRIGPVKPAAGNRGTVVELRDLFFATPARLKFLRSDRAETQAVAEVIRRLAM 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITL 233
           A P V FT S     R      +  G        R+++V+G DFI+NA+ ++   + ITL
Sbjct: 187 AEPYVGFTLSDEDEGRVLFRADAEQGELFGALQTRLARVMGRDFIDNALAVDATRDGITL 246

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G+  +PT++RG A   ++++NGR V+DK +   +R  Y + +  GR+P  VL L  DP 
Sbjct: 247 TGFAALPTYSRGAAVAQHLYVNGRPVRDKLLTGALRAGYMDVLASGRHPAAVLFLTCDPH 306

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           QVDVNVHPAK+ +RFR P I R  ++ +++ A+   G   SS ++   + +   + A + 
Sbjct: 307 QVDVNVHPAKAEVRFREPDIARGLVVSALRHALAGAGHRASSTVAMAALGAARPEPASEQ 366

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
              +Y  S    +         L+      ++ PT   +  P    E T   LG A AQ+
Sbjct: 367 PR-RYQASYAPARPSAPAIAASLAFQAPGFAEAPTARVEPQPEALPEPTQAPLGAARAQL 425

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+N+I++QT DG+VIVDQHAAHERL++E+++   ++T I SQ LL PEI++L E +   I
Sbjct: 426 HENWIVAQTADGIVIVDQHAAHERLVYERLKAQLDATGIASQALLIPEIVELSEADAHRI 485

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           +    +L  LG+  E FG  A+A+RE+PA++ + N   L+RDI+D++ D   +  L+ R+
Sbjct: 486 LAIAGELAALGLVIEPFGGGAVAVREVPALIQRLNAAALIRDILDDLADQGASDRLRARV 545

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + +L++MAC+GS+RSGR+M + EMN LLREME+ P S QCNHGRPT+I+LKL+DIE+LFG
Sbjct: 546 DAVLSSMACHGSVRSGRRMSADEMNALLREMERVPKSGQCNHGRPTWIELKLADIERLFG 605

Query: 594 R 594
           R
Sbjct: 606 R 606


>gi|254719953|ref|ZP_05181764.1| DNA mismatch repair protein [Brucella sp. 83/13]
 gi|265984961|ref|ZP_06097696.1| DNA mismatch repair protein mutL [Brucella sp. 83/13]
 gi|306838542|ref|ZP_07471380.1| DNA mismatch repair protein MutL [Brucella sp. NF 2653]
 gi|264663553|gb|EEZ33814.1| DNA mismatch repair protein mutL [Brucella sp. 83/13]
 gi|306406409|gb|EFM62650.1| DNA mismatch repair protein MutL [Brucella sp. NF 2653]
          Length = 623

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 271/622 (43%), Positives = 393/622 (63%), Gaps = 28/622 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG
Sbjct: 1   MTIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G +
Sbjct: 61  SGIPADELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P
Sbjct: 121 VCVTGGHLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGNA   + ++NGR V+DK I   +R  Y++ I   R+PV VL L +DP  VDVNV
Sbjct: 241 PSFNRGNALHQFAYVNGRPVRDKQIFGALRGTYSDVIARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRP 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDP--------------------------TYSED 392
           A S +    +      R   +                                    +  
Sbjct: 361 ANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPAFRENGQAVLGDVAAPAADARA 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +      E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I
Sbjct: 421 SVAEAPVELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPI 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL
Sbjct: 481 AGQILLIPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RD+ DEI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  
Sbjct: 541 IRDLADEIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGT 600

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 CNHGRPTYIELKLTDIERLFGR 622


>gi|209966848|ref|YP_002299763.1| DNA mismatch repair protein MutL, putative [Rhodospirillum centenum
           SW]
 gi|209960314|gb|ACJ00951.1| DNA mismatch repair protein MutL, putative [Rhodospirillum centenum
           SW]
          Length = 617

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/616 (38%), Positives = 366/616 (59%), Gaps = 22/616 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  +R+L E+++N+IAAGE++ERP+ A+KEL+EN+LDA +SR+E V+  GGK+   + D+
Sbjct: 1   MPTLRRLPERLVNRIAAGEVVERPAAAVKELVENALDAGASRIEVVLRDGGKALIGVADD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G GM  EE+ +AV+RH TSK+  DD ++I T GFRGEALPSIGAVS L++ SRP   ++ 
Sbjct: 61  GCGMAPEELELAVERHATSKLPDDDLTHIRTLGFRGEALPSIGAVSRLSITSRPRGADSA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             I + G     V P A   GT +EVRDLF+  PARL FLK  + E+    D + R+A+A
Sbjct: 121 HAILVEGGAKGPVMPAAGGIGTRIEVRDLFYATPARLKFLKGNRTESEHARDAVERLAMA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQST--NGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +P V+F  +       ++   +         R+  V+G +F  NA+ ++     + L G+
Sbjct: 181 HPHVTFLLTDEGRTPLRLPAATGDLMEARLVRLGAVLGREFQENALPVDAARGPVRLVGH 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G+PT NR  A   Y+F+NGR V+D+ ++  +R AYA+ +   R+P++ L LE+ P +VD
Sbjct: 241 IGLPTLNRPTAAGQYLFVNGRPVKDRLLVGAVRGAYADFLARDRHPMLALFLELPPEEVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-------VLSKKMISSFHQDN 349
           VNVHPAK+ +RFR+  ++R  I+ +++ A+ + G   S+              +      
Sbjct: 301 VNVHPAKTEVRFRDQALVRGLIVGALKHALAQAGHRASTGVAAAALASFAPHDAPLPPPV 360

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE----------S 399
                  + A           L E  ++ N  LP      S   D +             
Sbjct: 361 QSALPWQRPAGGFAPAAVPRGLAEMAMAFNAPLPGSPVPASAPPDGLHPAAPVEATTGTE 420

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
            A  + LG A AQ+H  YI++QT DG+VIVDQHAAHERL++E+M+ D  +  +  Q LL 
Sbjct: 421 PARAFPLGAARAQLHTTYIVAQTEDGIVIVDQHAAHERLVYERMKHDLLAGGVKRQGLLI 480

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS-KKNIPQLLRDIID 518
           PE+++L   +   + E   +L  LG+  E FG   + +RE+PA+L  + ++  L+RD+ D
Sbjct: 481 PEVVELDPADAERLGERAAELAELGLVLEPFGTGCVVVREVPALLGARADVRGLVRDLAD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           E+ +      L++R+E + + MAC+GS+R+GR M + EMN LLR+ME  P+S QCNHGRP
Sbjct: 541 ELAELGDALALKERLEAVCSRMACHGSVRAGRPMNADEMNALLRQMEATPHSGQCNHGRP 600

Query: 579 TFIKLKLSDIEKLFGR 594
           T+++LKL+DIE+LFGR
Sbjct: 601 TYVELKLADIERLFGR 616


>gi|15837362|ref|NP_298050.1| DNA mismatch repair protein [Xylella fastidiosa 9a5c]
 gi|20455160|sp|Q9PFB8|MUTL_XYLFA RecName: Full=DNA mismatch repair protein mutL
 gi|9105652|gb|AAF83570.1|AE003917_4 DNA mismatch repair protein MutL [Xylella fastidiosa 9a5c]
          Length = 619

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 216/619 (34%), Positives = 346/619 (55%), Gaps = 27/619 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE+++RP+  +KEL+EN++DA ++RV+  +   G    +I DNG
Sbjct: 1   MPIRQLPEILINQIAAGEVVQRPASVVKELVENAIDAGATRVDIELEAAGGRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM ++E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TLMSR   +  G
Sbjct: 61  HGMAAQELPLAVLRHATSKIASLDDLEAVATLGFRGEALPSIVSVSRFTLMSRRAMDEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A + I G  +  V P A  PGT VEVRDLF+ +PAR  FL++E+ E   I +  R +A+A
Sbjct: 121 AVLQIEGGTLGEVIPHAHAPGTTVEVRDLFYNVPARRKFLRAERTELGHIEEWARSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P +    S       +        +    + +++GEDF + A+ ++     + L G   
Sbjct: 181 HPDLELRLSHNGKLSRRYKPGDWYSDAR--LIEILGEDFAHQALRVDHSGAGLRLHGCIV 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R N +Q Y+++NGR V+D+ +   ++ AY++ +  GR+P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRSNTDQQYLYVNGRAVRDRSVAHAVKQAYSDVLYQGRHPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  +RFR+  +I +F+ +++Q  + +    T  +              P  H   +
Sbjct: 299 VHPAKQEVRFRDARLIHDFVYRTVQGTLAQTRAGTPPLAVGAGDVGGEGARPPVRHAVSF 358

Query: 359 AT----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY---- 404
           +           S + +   L      +S  D   +    Y+     V ++         
Sbjct: 359 SGRRGGASHVLGSYSASTAPLMQSAPSVSVADAPAAYAALYAAPPTQVIDAVPQMQTGLP 418

Query: 405 ---------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                     LG A AQ+H  YI+++  DGL++VD HAAHER+ +E++++  +   + +Q
Sbjct: 419 LAAGAGDVPPLGYAIAQLHGIYILAECADGLIVVDMHAAHERIGYERLKRAHDGIGLRTQ 478

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  + + E E  +     E L  LG +  R GP ++ +R IPA+L++     LLRD
Sbjct: 479 PLLVPMTLMVAEREADVAECEAETLASLGFEVTRSGPGSLQVRSIPALLAQAEPEILLRD 538

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++ +   T  + +  + +LATMAC+G++R+ R++   EMN LLR+ME    S QCNH
Sbjct: 539 VLSDLSEHGHTRRVAEARDTLLATMACHGAVRAQRRLSISEMNALLRDMEATERSGQCNH 598

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ +  L++I++ F R
Sbjct: 599 GRPTWARFSLAEIDRWFLR 617


>gi|332559571|ref|ZP_08413893.1| DNA mismatch repair protein [Rhodobacter sphaeroides WS8N]
 gi|332277283|gb|EGJ22598.1| DNA mismatch repair protein [Rhodobacter sphaeroides WS8N]
          Length = 616

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 256/602 (42%), Positives = 381/602 (63%), Gaps = 11/602 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA + R+   IA GGK+  ++TD+G G
Sbjct: 15  IRQLDEAAINRIAAGEVVERPASAVKELVENALDAGARRIAVDIACGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT++++P+A+ RH TSKI   D  +I +FGFRGEALPS+ AV  LT+ SR  +   GAQI
Sbjct: 75  MTADDLPLALSRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTITSRVAEGE-GAQI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A+S  +I  VRP A+  GT+VE+RDLFF  PARL FL++++ ET  I +V+RR+A+A P+
Sbjct: 134 AVSAGRIEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVVRRLALAEPE 193

Query: 182 VSFTFSTI--KSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQG 235
           V FT +       R     ++  G+       R+++V+G +F  NA+ ++     + LQG
Sbjct: 194 VGFTLTDHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGAEFAENALRIDVAREGLRLQG 253

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG+    ++F+NGR V D+ +L  +R  Y + +   RYP  VL L  DP++V
Sbjct: 254 YAALPTYSRGSGVAQFLFVNGRPVLDRMLLGALRAGYMDVLSRDRYPAAVLNLICDPQRV 313

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR    +R  I+ ++++A+   G   S+ ++ + + +F  +       
Sbjct: 314 DVNVHPAKAEVRFREAGEVRGLIVTALRQALAGAGHRASTTVAGETLEAFRPERPAAAGP 373

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHYQLGIACAQ 412
              +      +          +     P+           VE     EA    LG A AQ
Sbjct: 374 GPASRIYQMDRPSAAAVARSFAFQAPEPAMPGLAEAPAARVEAPVAEEAHDRPLGAARAQ 433

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH N+I++QT  GLVIVDQHAAHERL++EK+++  + T I  Q LL PEI++L   + A 
Sbjct: 434 IHGNWILAQTESGLVIVDQHAAHERLVYEKLKRQRDETGIARQALLIPEIVELSPTDAAR 493

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++E  ++L   G+  E FG  A+A+RE+PAIL K     LLRDI+D++ D  ++  LQ R
Sbjct: 494 LLEAADELASAGLVIEPFGGGAVAVREVPAILGKVEAAPLLRDILDDLADLGSSDRLQAR 553

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           ++ +L+ MAC+GS+RSGR +++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LF
Sbjct: 554 MDAVLSRMACHGSVRSGRALRAEEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLF 613

Query: 593 GR 594
           GR
Sbjct: 614 GR 615


>gi|89067221|ref|ZP_01154734.1| DNA mismatch repair protein [Oceanicola granulosus HTCC2516]
 gi|89046790|gb|EAR52844.1| DNA mismatch repair protein [Oceanicola granulosus HTCC2516]
          Length = 608

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 251/599 (41%), Positives = 379/599 (63%), Gaps = 12/599 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+E   A GGK   ++TD+G G
Sbjct: 14  IRQLDEAAINRIAAGEVVERPASAVKELVENAIDAGATRIEIDYADGGKRLIRVTDDGCG 73

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  +++P+A+ RH TSKI   D   I TFGFRGEALPS+GAV  LT+ SR       A I
Sbjct: 74  IAGDDLPLALSRHATSKIDGSDLLEISTFGFRGEALPSLGAVGRLTITSRCGDA--AASI 131

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G +  +VRP A++ GT VE+RDLF   PARL FL++++ E   I + ++R+A+A P 
Sbjct: 132 TVTGGRAEAVRPAALSRGTRVELRDLFHATPARLKFLRTDRAEAQAIAETVKRLALAEPF 191

Query: 182 VSFTFS--TIKSNRYKMNFQSTNGNFPERI----SQVIGEDFINNAVELNEKSNEITLQG 235
           V+FT +  +  S R      + +G+  + +    +QV+G DF  NA+ L+ +     L G
Sbjct: 192 VAFTLTDLSGDSPRTVFRADAQSGDLFDALHGRTAQVLGRDFAANAIPLDAEREGHHLTG 251

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG++ Q ++F+NGR VQD+ ++  +R AY + +   R+P  VL ++  PR V
Sbjct: 252 YAALPTYSRGSSVQQFLFVNGRPVQDRLLIGALRAAYMDVLSRDRHPAAVLFIDCAPRLV 311

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAKS +RFR+   +R  I+  ++ A+   G   SS ++   + +F  +  P    
Sbjct: 312 DVNVHPAKSQVRFRDGGSVRGLIVSGLRHALAGAGHRASSTVAGATLGAFRAEPGP---A 368

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P    +     ++   +           +  P+   +             LG A AQ+H+
Sbjct: 369 PANEPARVYQMDRPAPRAAMPPMPGFAEAPAPSARIEAPAAPAPGDERRPLGAARAQVHE 428

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           NYI++QT  G+V+VDQHAAHERL++EK+++      I +Q LL PEI++L E +CAL++ 
Sbjct: 429 NYIVAQTETGIVLVDQHAAHERLVYEKLKRQSAENGIAAQALLIPEIVELSESDCALLLS 488

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           H + L  LG+  E FG  A+A+RE PA+L + +   L+RDI+DE+ D   +  L+ RI+ 
Sbjct: 489 HADTLATLGLVLEPFGGGAVAVRETPALLGQVDAAALVRDILDELADLGESTALRARIDA 548

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           IL+ +AC+GSIRSGR+M++ EMN LLREME  P S QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 549 ILSRVACHGSIRSGRQMRAEEMNALLREMEATPLSGQCNHGRPTYVELKLSDIERLFGR 607


>gi|192293214|ref|YP_001993819.1| DNA mismatch repair protein [Rhodopseudomonas palustris TIE-1]
 gi|238692573|sp|B3Q7Y9|MUTL_RHOPT RecName: Full=DNA mismatch repair protein mutL
 gi|192286963|gb|ACF03344.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris TIE-1]
          Length = 595

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 236/599 (39%), Positives = 368/599 (61%), Gaps = 10/599 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+N+IAAGE++ERP+  +KEL+EN++DA SSR++    GGG+    I D+G
Sbjct: 1   MPVRQLPEIIVNRIAAGEVVERPASVVKELVENAIDAGSSRIDIFSDGGGRRKIVIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT+ ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L++ +R        
Sbjct: 61  SGMTAADLALAVDRHATSKLDDEDLLQIRTLGFRGEALPSIGAVAKLSITTRHASEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G   + + P A++ GT VEV DLFF  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 TLRVEGGDKTPIAPAALSQGTRVEVADLFFATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF  NA+E+  +   + ++G+  
Sbjct: 181 PDIAFTLAGEERAPVTWAAALPGAPGQLIRLGDILGADFRANAIEVRAEREGVVVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   + NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PVV L + +D R+VD N
Sbjct: 241 SPALTKANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVVALFVTLDSREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ +++  + ++G  T++  +  +IS+F   + P  +    
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKDGLAREGRRTAANSAGSVISTFRPASMPPANWDWR 360

Query: 359 ATSLTN---TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           A+       +    F +  + + +   PS D   +E        +     LG A  QIH+
Sbjct: 361 ASPSYPVGGSAAPSFAERAQAAFDVGAPSADIRPTEVT-----PDLLDRPLGAARTQIHE 415

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+SQT DGL++VDQHAAHER+++E+++    +  +  Q LL P+I+++ E     ++ 
Sbjct: 416 TYIVSQTRDGLIVVDQHAAHERIVYERLKASLEANGVQRQILLIPDIVEMDEATVERLVA 475

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E+L + G+  E FGP A+A+RE P++L K +   LLRD+ + + +      L+ R+ +
Sbjct: 476 RGEELAKFGLVIESFGPGAVAVRETPSLLGKTDAGGLLRDLAEHMAEWDEALPLERRLMH 535

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++L L+DIEKLFGR
Sbjct: 536 VAATMACHGSVRAGRVLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLTDIEKLFGR 594


>gi|194366527|ref|YP_002029137.1| DNA mismatch repair protein [Stenotrophomonas maltophilia R551-3]
 gi|194349331|gb|ACF52454.1| DNA mismatch repair protein MutL [Stenotrophomonas maltophilia
           R551-3]
          Length = 634

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/627 (34%), Positives = 345/627 (55%), Gaps = 36/627 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L + +INQIAAGE++ERP+  +KEL+EN++DA +SRV+  +  GG    +I DNG 
Sbjct: 8   PIRPLPDILINQIAAGEVVERPASVVKELVENAIDAGASRVDIDLEEGGVRLIRIRDNGS 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+AV RH TSKI+  DD  ++ T GFRGEALPSI +VS  TL SR   +  G+
Sbjct: 68  GIAPEQLPLAVSRHATSKIADLDDLESVATLGFRGEALPSIASVSRFTLSSRRAHDEHGS 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G KI  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I + +R +A+A 
Sbjct: 128 ALQIEGGKIGEVTPRAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALAR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V    S       +        +    +++ +GEDF N AV ++     + L G+   
Sbjct: 188 PDVELRVSHNGKASRRYKPGDLYSDTR--LAETLGEDFANQAVRVDHSGAGLRLHGWIAQ 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P ++R +A+Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVNV
Sbjct: 246 PHYSRASADQQYLYVNGRSVRDRSVAHAVKMAYGDVLYHGRQPAYVLFLELDPTRVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR+  ++ +F+ ++++ A+       S+              A        A
Sbjct: 306 HPAKHEVRFRDSRLVHDFVYRTLKDALADTRAGMSAQEIGAGAVHPVDAAAAPVASTAGA 365

Query: 360 TSLT---------------------NTQEKLFLQ-----------ENRLSTNDLLPSDDP 387
           +                          Q+ L LQ               S  +   +  P
Sbjct: 366 SGFGLVRGPAPGAGSGGGGGGFSGWRPQQPLGLQVADAPAAYAALYAAPSGAERGAALPP 425

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             +E+  PV  ++A    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   
Sbjct: 426 MPTENGLPVTSADAGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAH 485

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +   + SQ +L P  + + E E        + L  LG +  R GP ++ +R IPA+L+  
Sbjct: 486 DGIGLQSQPMLVPITLAVGEREADTAESEADTLAALGFEVTRAGPGSLHVRSIPALLAHA 545

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
               LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME  
Sbjct: 546 EPEGLLRDVLTDLREHGQSRRVATARDELLSTMACHGAVRANRRLTVPEMNALLRDMEIT 605

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             S QCNHGRPT+ +  L++I++ F R
Sbjct: 606 ERSGQCNHGRPTWARFSLAEIDRWFLR 632


>gi|21231736|ref|NP_637653.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768138|ref|YP_242900.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991275|ref|YP_001903285.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|25090745|sp|Q8P8E4|MUTL_XANCP RecName: Full=DNA mismatch repair protein mutL
 gi|81305885|sp|Q4UVP3|MUTL_XANC8 RecName: Full=DNA mismatch repair protein mutL
 gi|229486329|sp|B0RRZ8|MUTL_XANCB RecName: Full=DNA mismatch repair protein mutL
 gi|21113440|gb|AAM41577.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573470|gb|AAY48880.1| DNA mismatch repair protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733035|emb|CAP51233.1| DNA mismatch repair protein MutL [Xanthomonas campestris pv.
           campestris]
          Length = 624

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 217/624 (34%), Positives = 340/624 (54%), Gaps = 32/624 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +INQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIDLEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR P    G
Sbjct: 61  GGIAPEELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLASRRPDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 SALQIEGGRLGEVMPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +GEDF   A+ ++     + L G+  
Sbjct: 181 RPDVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGAGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN--------- 349
           VHPAK  +RFR   +I +F+ +++Q A+ +              ++              
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAQTRAGALPADVGVGGAAALGIGAVAAQGGGS 358

Query: 350 --------APKTHLPKYATSLTNTQEKLFLQENRLST-----------NDLLPSDDPTYS 390
                    P         S   +Q  L L+ +               + L     P  S
Sbjct: 359 YVADAGAGHPGAGSGSGYASWAPSQAPLGLRVDEARAAYAALYAPAAGSALRDDGQPVLS 418

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
               P    ++    LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++Q  +S 
Sbjct: 419 GTGLPATAHDSGVPPLGYAVAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKQAHDSI 478

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            + +Q LL P  + + E E        + L  LG +  R GP ++ +R IPA+L+  +  
Sbjct: 479 GLHAQPLLVPMTLAVGEREADTAEREADTLASLGFEITRSGPQSLHVRSIPALLANADPE 538

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME    S
Sbjct: 539 ALLRDVLGDLREHGQSRRIATARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATERS 598

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+ +  L +I++ F R
Sbjct: 599 GQCNHGRPTWARFTLGEIDRWFLR 622


>gi|90422900|ref|YP_531270.1| DNA mismatch repair protein [Rhodopseudomonas palustris BisB18]
 gi|123275477|sp|Q219I5|MUTL_RHOPB RecName: Full=DNA mismatch repair protein mutL
 gi|90104914|gb|ABD86951.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris
           BisB18]
          Length = 599

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 238/598 (39%), Positives = 367/598 (61%), Gaps = 4/598 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E ++N+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    ITD+G
Sbjct: 1   MPVRQLPETVVNRIAAGEVVERPASVVKELVENAIDAGASRIDIFTDGGGRRRIGITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV RH TSK+ D D   I T GFRGEALPSIG+V+ L++ +R        
Sbjct: 61  AGMTHADLTLAVDRHATSKLDDEDLLAIRTLGFRGEALPSIGSVAKLSITTRHAAEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +A+ G   S + P A++ GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 ALAVEGGAKSPIVPAALSHGTRVEVSDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++F+ +  +                  R+  ++G DF +NA+E+  + + + ++G+  
Sbjct: 181 PDIAFSMAGEERAPVTWAAALPGAAGRLTRLGDILGGDFRSNAIEVRSERDGVVVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK I+  +R AY++ +P  R+PVV L + +D R+VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLIIGAVRAAYSDYLPRDRHPVVALFVSLDSREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFR+  ++R  I+ ++++ + ++G  T++  +   ISSF    AP+ +    
Sbjct: 301 VHPAKTEVRFRDAGLVRALIVHALKEGLAREGKRTAANDAGATISSFRPSFAPRANWDWR 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDP--TYSEDNDPVEESEATHYQLGIACAQIHQN 416
           ++                         D     ++       ++ T   LG A  QIHQ 
Sbjct: 361 SSPSYPVAGSAAFDAAAGFAEREQSGFDVGAPSADVRSYQPSADFTDRPLGAARTQIHQT 420

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI++QT DGLV+VDQHAAHERL++EK++    +  +  Q LL PEI++L E     ++  
Sbjct: 421 YIVAQTRDGLVVVDQHAAHERLVYEKLKASLATNGVQRQILLIPEIVELDEATVERLVAR 480

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E+L   G+  E FGP A+A+RE P++L K +   LLRD+ + + +      L+ R+ ++
Sbjct: 481 GEELATFGLVVESFGPGAVAVRETPSLLGKTDAGALLRDLAEHMAEWDEALPLERRLLHV 540

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++LKLSDIEKLFGR
Sbjct: 541 AATMACHGSVRAGRVLKPEEMNALLREMEDTPNSGQCNHGRPTYVELKLSDIEKLFGR 598


>gi|163758427|ref|ZP_02165515.1| putative DNA mismatch repair protein [Hoeflea phototrophica DFL-43]
 gi|162284716|gb|EDQ34999.1| putative DNA mismatch repair protein [Hoeflea phototrophica DFL-43]
          Length = 620

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 283/621 (45%), Positives = 395/621 (63%), Gaps = 29/621 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I +L E +INQIAAGE+IERP+  +KEL+EN++DA +SRVE   AGGGK+  ++ D+G
Sbjct: 1   MRIHQLPETLINQIAAGEVIERPASVVKELVENAIDAGASRVEIATAGGGKALIRVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM +E++ +AV+RHCTSKI     +I T GFRGEALPSIG+V+ LTL SRP       +
Sbjct: 61  RGMDAEDLQLAVRRHCTSKIDQRLDDIRTLGFRGEALPSIGSVARLTLRSRPADAAHANE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+++G   S ++P A N GT VEVRDLFF  PARL FLKS++ ET  IT+V+RR+AIA+P
Sbjct: 121 ISLAGGVPSPLKPAAANKGTTVEVRDLFFATPARLKFLKSDRAETAAITEVVRRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V FT S    +R  ++  +T  +   RI QV+G +F  N + L+    EI L G+ G+P
Sbjct: 181 SVRFTLS--GPDRSTLDLAATGEDRLARIGQVLGAEFAANTIALDAMREEIELTGHIGLP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T+N+ N+   Y F+NGR VQDK ILS IR AY++T+P GRYPV VL + +DP  VDVNVH
Sbjct: 239 TWNKANSLSQYAFVNGRPVQDKQILSAIRAAYSDTLPRGRYPVAVLWITLDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH--------QDNAPK 352
           PAK+ +RFR+P ++R  ++ +I++A+   G   S      ++ +F         Q     
Sbjct: 299 PAKADVRFRDPGLVRGLLVGAIRQALLAGGDQASPSARADLVRAFSSTSPAGSDQSLPGS 358

Query: 353 THLP------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           + +P                  ++A + + +             +          S   D
Sbjct: 359 SSMPPAFHRDGNSAGLAGGWTGQWAAAQSPSWPLDGAAPGFGEASQAEFEAAAAPSGRFD 418

Query: 395 PVEESEATHYQL-GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
              E+E       G A AQ+H+NYI+SQT+DG+VIVDQHAAHERL+FE+++       + 
Sbjct: 419 KAPETEPDARHPLGAARAQVHENYILSQTSDGMVIVDQHAAHERLVFERLKTALREGSVA 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LL PEIIDL E +C  + E   +L   G+  ERFGP AIA+RE PA+L + ++  L+
Sbjct: 479 SQILLLPEIIDLPEDDCDRLAERAGELAGFGLVLERFGPGAIAVRETPAMLGETDVTGLV 538

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           RD+ DEI +  +T  LQ+R+E + +TMAC+GS+RSGR++   EM+ LLREME+ P S QC
Sbjct: 539 RDLADEITEWDSTGGLQERLEAVASTMACHGSVRSGRRLTREEMDALLREMERTPGSGQC 598

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+I+LKLSDIEKLF R
Sbjct: 599 NHGRPTYIELKLSDIEKLFSR 619


>gi|88704498|ref|ZP_01102212.1| DNA mismatch repair protein mutL [Congregibacter litoralis KT71]
 gi|88701549|gb|EAQ98654.1| DNA mismatch repair protein mutL [Congregibacter litoralis KT71]
          Length = 629

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 214/627 (34%), Positives = 349/627 (55%), Gaps = 33/627 (5%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I++L  ++ NQIAAGE++ERP+  +KEL+ENSLDA + RV+  I   G    +I D+
Sbjct: 1   MPLIKRLPPRLANQIAAGEVVERPASVVKELLENSLDAGARRVDLDIEAAGTKLIRIRDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ S+++P+A+ RH TSKI   DD   + +FGFRGEAL SIG+VSHL + S   +  +
Sbjct: 61  GSGIASDDLPLALDRHATSKIESLDDLEQVGSFGFRGEALASIGSVSHLVVTSNTAEAGS 120

Query: 118 -GAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
            G   + SG  +    +P A   GT VEVRDLFF  PAR  FL++E+ E N + DV++R+
Sbjct: 121 DGQAASCSGRDMEVTLKPAAHPRGTTVEVRDLFFNTPARRKFLRTERTEFNHLDDVVKRI 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A++   VSF           +       +   R++ + G  F+ NAV ++  + ++ L G
Sbjct: 181 ALSRFDVSFALRHNGRQLRDLRRCDNEADQLRRVASLCGPAFVENAVAIDRNAGDLRLHG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +   P+F+R  A+  + ++NGR ++DK ++  +R A+++ +  GR+P  VL LE+DP +V
Sbjct: 241 WVAQPSFSRSQADLQHFYVNGRYIRDKLVVHAVRQAFSDVLYQGRHPAFVLYLELDPAEV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH--------- 346
           DVNVHP K  +RFR+   + +FI  ++ KA+     S S+V ++  +S            
Sbjct: 301 DVNVHPTKHEVRFRDGRSVHSFIYSTLHKALADIRPSDSAVPTQASMSPVSASTGRLDLL 360

Query: 347 ------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                       ++               +  ++   Q  R +      +   +Y +   
Sbjct: 361 TGELVRQQEMGLREQGAGRLTAANPGVFADRGDRGDFQGGRGAPAGFDDATAASYRQLYA 420

Query: 395 PVEES-------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             ++         A    LG A AQ+H  YI++Q  +G+V+VD HAAHER+ +E+++Q  
Sbjct: 421 SPDKPGSVEEGDGADIPPLGYALAQLHGIYILAQNREGMVLVDTHAAHERITYERLKQAR 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +   I SQ LL P+ + +   E  L+ EH      LG++ +  G  ++ IREIP  L   
Sbjct: 481 DEQGIRSQPLLVPQSVSVSSREAILVEEHAALFESLGLRVDVAGEESLLIREIPVSLQGA 540

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           ++ QLLRD++ ++++  ++  +    + +L+TMAC+GS+R+ R++   EMN LLR+ME  
Sbjct: 541 DVEQLLRDVLADLLEYGSSERIARHEDELLSTMACHGSVRANRRLTVPEMNALLRDMEVT 600

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             S QCNHGRPT+  L + D+++LF R
Sbjct: 601 ERSGQCNHGRPTWTALSVQDLDRLFLR 627


>gi|325292085|ref|YP_004277949.1| DNA mismatch repair protein [Agrobacterium sp. H13-3]
 gi|325059938|gb|ADY63629.1| DNA mismatch repair protein [Agrobacterium sp. H13-3]
          Length = 609

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 300/607 (49%), Positives = 411/607 (67%), Gaps = 15/607 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERPS A KEL+EN++DA ++R+E   AGGGK   +ITDNG
Sbjct: 4   MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNG 63

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM+  ++ +AV+RHCTSKIS    +I T GFRGEALPSIG+V+ L++ SR      G+ 
Sbjct: 64  SGMSPADLELAVRRHCTSKISTTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSV 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+++G K+S VRP A N GTIVEVRDLFF  PARL FLK+E+ E   IT+V++RMAIA+P
Sbjct: 124 ISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKTERAEAAAITEVVKRMAIAFP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F  S   ++R  +   ST  +   R++Q++G +F +NA+E++    ++TL G+ G+P
Sbjct: 184 HIRFVLS--GTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   YVF+NGR VQDK +LS IR AYAET+P GRYPV VL L +DP  VDVNVH
Sbjct: 242 TFNRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++A+ + G   ++  + +M+++F    +P    P  A 
Sbjct: 302 PAKSDVRFRDPGLVRGLIVGAIRQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAA 361

Query: 361 ----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLG 407
                      L  +    F +  +   +D+          +      S   E + Y LG
Sbjct: 362 TWSAAASPSRPLAVSGNMQFAEAVQSRFSDITMPTARAEPREVYEASASPSLEPSQYPLG 421

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A AQ+HQNYI++QT DGLVIVDQHAAHERL+FE+MR   +S +  SQ LL PEIIDL E
Sbjct: 422 AARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPE 481

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +C  +M+H      LG+  ERFGP A+A+RE PA+L + N+  L+R + DEI +     
Sbjct: 482 EDCDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAAS 541

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
           TL +++E + ATMAC+GS+RSGR+M+  EMN LLR+ME  P S QCNHGRPT+I+LKLSD
Sbjct: 542 TLANKLEYVAATMACHGSVRSGRRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSD 601

Query: 588 IEKLFGR 594
           IE+LFGR
Sbjct: 602 IERLFGR 608


>gi|49475080|ref|YP_033121.1| DNA mismatch repair protein [Bartonella henselae str. Houston-1]
 gi|81827745|sp|Q6G4R4|MUTL_BARHE RecName: Full=DNA mismatch repair protein mutL
 gi|49237885|emb|CAF27081.1| DNA mismatch repair protein mutL [Bartonella henselae str.
           Houston-1]
          Length = 612

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 272/612 (44%), Positives = 396/612 (64%), Gaps = 19/612 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KEL+EN++DAE++R+E V   GGK+F +++DNG
Sbjct: 1   MIIRHLSENIINQIAAGEVIERPANVVKELVENAIDAEATRIEIVTTNGGKNFIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++++ +AV RHCTSKI+DD  NI   GFRGEALPSIG+V+ L L SR     + A+
Sbjct: 61  CGIPADQLTLAVSRHCTSKITDDVHNICFLGFRGEALPSIGSVAKLKLTSRTQNAESAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  KI   +P A NPGTIVEVRDLFF  PARL F+K+++ ETN ITD+I+R+AIA+P
Sbjct: 121 IIVTAGKIVGPKPAAANPGTIVEVRDLFFVTPARLKFMKTDRAETNSITDMIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ S       ++   + N     +RI+Q++G++F  N++ LN +   + L G+  +
Sbjct: 181 HIHFSLSGSDRTSLELPATANNTQGQLQRITQIMGKEFAPNSIVLNAERESVRLTGFACL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DKF+   IR AYA+ +   RYPV +L +++ P  VDVNV
Sbjct: 241 PSFNRSNSLHQFAYVNGRPVRDKFLWGAIRGAYADVMTRDRYPVSILFIDLPPADVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RFR+P  IR  I+ +I++A++  G+ ++S  S+ M+++F      KT    Y 
Sbjct: 301 HPTKADVRFRDPGFIRGLIVGAIREALHHTGVRSTSTRSEAMLAAFQTQKPLKTFKSTYK 360

Query: 360 TSLTNTQE-----------------KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            S  + Q                   + L+E+     + L          N P   SE  
Sbjct: 361 PSSYSPQPYHVESASMVNKPLDIISPVGLKEDAPPLMEGLDIPSGDAYTPNTPAA-SEEC 419

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            Y LG A AQIH+NYII+QT D L+IVDQHAAHERL++E ++    S  + SQ LL PEI
Sbjct: 420 SYPLGAARAQIHKNYIIAQTQDSLIIVDQHAAHERLVYEALKNALYSKPLPSQLLLIPEI 479

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++L E +   ++ H + L + G+  E FGP AI +RE P++L + N+  L++D+ DE  +
Sbjct: 480 VELSEEDATCLLTHKDALQKFGLGIEAFGPGAIVVRETPSLLGEINVEALIKDLADEAAE 539

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             TT  L+  ++ + ATMAC+GSIRSGR +   EMN LLR++E  PN+  CNHGRPT+I+
Sbjct: 540 YDTTDNLKTMLDYVAATMACHGSIRSGRLLHPEEMNALLRQIEATPNTGTCNHGRPTYIE 599

Query: 583 LKLSDIEKLFGR 594
           LKL+DIE+LFGR
Sbjct: 600 LKLADIERLFGR 611


>gi|110835066|ref|YP_693925.1| DNA mismatch repair protein [Alcanivorax borkumensis SK2]
 gi|110648177|emb|CAL17653.1| DNA mismatch repair protein MutL [Alcanivorax borkumensis SK2]
          Length = 622

 Score =  555 bits (1429), Expect = e-156,   Method: Composition-based stats.
 Identities = 200/618 (32%), Positives = 333/618 (53%), Gaps = 25/618 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L  ++ NQIAAGE++ERP+  +KEL+EN+LDA S  +   +  GG    ++ DNG 
Sbjct: 3   KIQLLDSRLANQIAAGEVVERPASVLKELLENALDAGSESISVDVEQGGVKLLRVRDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI   DD   I T GFRGEAL +I +VS L+L S       G 
Sbjct: 63  GIERDDLPLALSRHATSKIRGLDDLEAIGTLGFRGEALAAISSVSRLSLASNVEGEPEGW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+ + G  ++    P     GT V +RDLFF  PAR  FL++E+ E N + +V RR+A++
Sbjct: 123 QVTVEGRDMAPSVSPAGHPRGTTVTMRDLFFNTPARRRFLRTEKTEFNHLEEVFRRIALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
               +F  +  +   +++     +     R++++ G+ FI  AV ++ + + + L G+ G
Sbjct: 183 EFNTAFRLTHNQKVIHQLPAGLDDTLRAARVAKLCGKGFIEQAVPVDVERDGLRLHGWMG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y ++NGR ++DK +   +R AY++ +  GR+P  VL LE+DP  VDVN
Sbjct: 243 LPTFSRSQADLQYFYVNGRVIRDKVVSHAVRQAYSDVLYHGRHPAYVLFLELDPAMVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------------KGISTSSVLS 338
           VHP K  +RFR   ++  F+  S+ + I                         + +    
Sbjct: 303 VHPTKHEVRFREQRMVHGFLYSSLHRVIAGVRPGQELAGSVADEGGPAAGMDAAMAPSQG 362

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
              ++S        +H P  A   T      + Q  R +                  +  
Sbjct: 363 NMSLTSPTGSGGSLSHPPGQAYPSTGGGVFGYGQGARQADAYGALVRGHVGESAPAVMPP 422

Query: 399 SEATHYQL--GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           +         G A AQ+H  +I+++   G+V+VD HAAHER+ +E+++Q +   K+ SQ 
Sbjct: 423 ANENETVPPLGYAVAQLHGIFILAENEQGMVVVDMHAAHERITYERLKQSWAEDKVRSQP 482

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P  + +   E     +  E   RLG   +R GP  + +RE+PA+L   +   ++RD+
Sbjct: 483 LLVPVSLAVSSREADFAEQQPEVFSRLGFVVQRAGPETLVVREVPALLRNGDSESMVRDV 542

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + +++   ++  +  +++ +L+TMAC+GS+R+ R++   EMN LLR+ME    S QCNHG
Sbjct: 543 LSDLLAEGSSERIAQKLDELLSTMACHGSVRANRRLTIAEMNALLRDMEATERSGQCNHG 602

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ ++ + D+++LF R
Sbjct: 603 RPTWTQMSIKDLDRLFMR 620


>gi|91978493|ref|YP_571152.1| DNA mismatch repair protein [Rhodopseudomonas palustris BisB5]
 gi|123166645|sp|Q131I8|MUTL_RHOPS RecName: Full=DNA mismatch repair protein mutL
 gi|91684949|gb|ABE41251.1| DNA mismatch repair protein MutL [Rhodopseudomonas palustris BisB5]
          Length = 597

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 235/596 (39%), Positives = 361/596 (60%), Gaps = 2/596 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E I+N+IAAGE++ERP+  +KEL+EN++DA + RV+    GGG+    I D+G
Sbjct: 1   MPVRQLPETIVNRIAAGEVVERPASVVKELVENAIDAGACRVDVFSDGGGRRKIVIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L+L +R        
Sbjct: 61  GGMTQADLALAVDRHATSKLDDEDLLAIRTLGFRGEALPSIGAVARLSLTTRHAAEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G   S + P A++ GT VEV DLFF  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 TLSVEGGAKSPISPAALSQGTRVEVADLFFATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF  NA+E+  +   + ++G+  
Sbjct: 181 PDIAFTLAGEERAPVTWAAALPGAPGRLTRLGDILGADFRANAIEVGSEREGVAVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK IL  +R AYA+ +P  R+PVV L + +D R+VD N
Sbjct: 241 SPSLTRANALGQYLFVNGRPVRDKLILGAVRAAYADYLPRDRHPVVALFVTLDSREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++  +   IS+F   + P  +    
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANSAGAAISNFRPASMPPGNWDWR 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           ++             +               ++        E     LG A  QIH+ YI
Sbjct: 361 SSPSYPVGGGSSAAPSFGERPQAAFDVGGPSADIRPHEAAPELLDRPLGAARTQIHETYI 420

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQT DGL++VDQHAAHER+++E+++   ++  +  Q LL P+I+++ E     ++   E
Sbjct: 421 VSQTRDGLIVVDQHAAHERIVYERLKASLDANGVQRQILLIPDIVEMDEATVERLVARAE 480

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L + G+  E FGP A+A+RE P++L K N   LLRD+ + + +      L+ R+ ++ A
Sbjct: 481 ELSKFGLVVESFGPGAVAVRETPSLLGKVNAASLLRDLAEHMAEWDEALPLERRLMHVAA 540

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++L L+DIEKLFGR
Sbjct: 541 TMACHGSVRAGRVLKPEEMNALLREMEATPNSGQCNHGRPTYVELTLADIEKLFGR 596


>gi|126736240|ref|ZP_01751983.1| DNA mismatch repair protein [Roseobacter sp. CCS2]
 gi|126714406|gb|EBA11274.1| DNA mismatch repair protein [Roseobacter sp. CCS2]
          Length = 603

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/599 (42%), Positives = 380/599 (63%), Gaps = 17/599 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+ENS+DA ++R+E VIA GGK+  ++TD+G G
Sbjct: 14  IRQLDDAAINRIAAGEVLERPASAVKELVENSIDAGATRIEVVIADGGKTLIRVTDDGCG 73

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT  ++PMA+ RH TSKI   D  NI +FGFRGEALPS+GA   L + SR       A I
Sbjct: 74  MTPSDLPMAMLRHATSKIDGSDLLNIQSFGFRGEALPSLGATGRLKITSRAKNAE-AAMI 132

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A++G +   V+P A++ GT++E+RD+F+  PARL FL++++ E   +TDV++R+A+A P 
Sbjct: 133 AVAGGQAEGVKPAALSAGTVIELRDMFYATPARLKFLRTDRAEAQAVTDVVKRLAMAEPF 192

Query: 182 VSFTFSTI--KSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQG 235
           V+F         NR      +  G+  +    R+  V+G+DF  NA+ ++ +     L G
Sbjct: 193 VTFILRDASKGDNRTVFRADAETGDLFDALHGRLRAVLGKDFAENALRIDTEREGFHLTG 252

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG A   ++F+NGR V+DK +L  +R AY + +   R+PV  L ++ DP  V
Sbjct: 253 YAALPTYSRGAAVAQFLFVNGRPVRDKMLLGALRAAYMDVLSRDRHPVAALFVDCDPTLV 312

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAKS +RFR+P  +R  I+  ++ A+   G   S+ ++   + +           
Sbjct: 313 DVNVHPAKSEVRFRDPGTVRGLIVSGLRHALADAGHRASTTVANATLGAI---------T 363

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P+         ++       ++     P      S   +P+ E +     LG A AQ+H+
Sbjct: 364 PERTEPRVYQMDRPSFSARSMTFQAQAPGFGEMPSARFEPMVEDDPDDLPLGAARAQVHE 423

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           NYII+QT +G+VIVDQHAAHERL++EK++       + +Q LL PEI++L E E A + +
Sbjct: 424 NYIIAQTENGIVIVDQHAAHERLVYEKLKAQMAENGVAAQALLIPEIVELSENEAAQLRD 483

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             +DL + G+  E FG  AIA+RE PAIL + N   ++RDI+DE+ D   + ++Q RIE 
Sbjct: 484 IADDLAKFGLTIEPFGGGAIAVRETPAILGEVNAEAMIRDILDELADQGDSASVQARIEA 543

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           IL+ +AC+GSIRSGR+MQ+ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 544 ILSRVACHGSIRSGRRMQAAEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLFGR 602


>gi|254486044|ref|ZP_05099249.1| DNA mismatch repair protein MutL [Roseobacter sp. GAI101]
 gi|214042913|gb|EEB83551.1| DNA mismatch repair protein MutL [Roseobacter sp. GAI101]
          Length = 613

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 255/600 (42%), Positives = 378/600 (63%), Gaps = 10/600 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + ++    A GGK+  ++TD+G G
Sbjct: 15  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGARQITVEYADGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + + ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR    + GA+I
Sbjct: 75  IPAVDLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRVAGQD-GAEI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G +   VRP A+N GT+V +RDLFF  PARL FL++++ E   I D+I+R+A+A P 
Sbjct: 134 TVNGGQTGPVRPAALNGGTVVTLRDLFFATPARLKFLRTDRAEAQAIADIIKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGN----FPERISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R     ++  G+       R++QV+G +F +N++ ++ +   + L 
Sbjct: 194 VRFTLRDVSGDGQGRDVFRAEAEQGDMFAALHGRLAQVLGREFADNSLPIDAEREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+  +PT++RG A   Y+F+NGR V+DK ++  +R AY + +   R+P   L L+  P  
Sbjct: 254 GFAALPTYSRGTAVAQYLFVNGRPVRDKLLVGALRGAYFDLLSRDRHPAAALFLDCAPTL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+  ++ A+   G   S+ ++   + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGLARGLIVSGLRHALADAGHRASTTVADATLGAMRPEQTGARV 373

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                 SL         Q    +    +     T +      E  E   Y LG A  Q+H
Sbjct: 374 YQMDRPSLGARTAAYQAQSPGFAETAGMWGRVETPAAPVTE-EPQETPDYPLGTARGQVH 432

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYII+QT  G+VIVDQHAAHERL++EK+++      + +Q LL PEI+DL   +CA ++
Sbjct: 433 ENYIIAQTATGMVIVDQHAAHERLVYEKLKRQMAENGVAAQALLIPEIVDLSASDCARLL 492

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           +  ++L RLG+  E FG +AIA+RE PAIL   N   ++ D++DE+ D + + T+Q RIE
Sbjct: 493 DVADELTRLGLTIEAFGGSAIAVRETPAILGTVNAKAMILDVLDELADQNESNTVQARIE 552

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIRSGR M+  EMN LLREME  P+S QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 553 AILSRVACHGSIRSGRWMRGEEMNALLREMEATPHSGQCNHGRPTYVELKLSDIERLFGR 612


>gi|319408063|emb|CBI81717.1| DNA mismatch repair protein MutL [Bartonella schoenbuchensis R1]
          Length = 615

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 267/614 (43%), Positives = 391/614 (63%), Gaps = 20/614 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KEL+EN++DA ++R+E V A GGK+  +++DNG
Sbjct: 1   MIIRHLSETIINQIAAGEVIERPANVVKELVENAIDAGATRIEIVTANGGKNLIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +++ +A+ RHCTSK+ DD  NI   GFRGEALPSIG+V+ L L+SR    ++ A+
Sbjct: 61  CGIPKDQLTLAISRHCTSKLVDDVHNICFLGFRGEALPSIGSVAKLKLVSRTQDADSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  KI   +P A N GT VEVRDLFF  PARL F+K++  E N ITD+I+R+AIA+P
Sbjct: 121 IIVTAGKIEGPKPAAANSGTTVEVRDLFFVTPARLKFMKTDSAEMNAITDMIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ S       ++     N     ERI+Q++G++F +N + LN +     L G+  +
Sbjct: 181 HIRFSLSGKDRTLIELPATENNTQGQLERITQIMGKEFGSNTITLNAERETARLTGFACL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGN+   +V++NGR V+DKF+   IR AY + +   R+ V +L +++ P  VDVNV
Sbjct: 241 PSFNRGNSLHQFVYVNGRPVRDKFLSGAIRGAYTDVMAPNRHAVSILFIDLPPADVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT-HLPKY 358
           HPAK+ +RFR+P +IR  II +I +A+ + GI  SS  SK M+++F + ++ KT   P  
Sbjct: 301 HPAKADVRFRDPGLIRGLIIGAIHEALRQTGIRPSSTGSKAMLAAFQRQSSFKTFRSPSP 360

Query: 359 ATSLTNTQEKLFLQENRLS------------------TNDLLPSDDPTYSEDNDPVEESE 400
               + + +  ++     S                  T  +   + P+          SE
Sbjct: 361 HQPFSYSPQPQYVAPGTTSADHKPVDIPDFSGLREDITPMIEYVNTPSSDVGFVNTSTSE 420

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
             +Y LG A AQIH+NYI++QT + L+IVDQHAAHERL++E ++    S  + SQ LL P
Sbjct: 421 ELYYPLGAAKAQIHKNYIVAQTKNSLIIVDQHAAHERLVYEALKNALYSKPLPSQLLLIP 480

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           EI++L E + A ++ H + L + G+  E FG  AI +RE P +L + N   L++D++DE 
Sbjct: 481 EIVELSEEDAACLLVHKDVLQKFGLGIEAFGSGAIVVRETPTMLGEINAQALIKDLVDEA 540

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            +  TT  L+  + ++ ATMAC+ SIRSGR +   EMN LLR+ME  PNSS CNHGRPT+
Sbjct: 541 SEYDTTDNLKAMLNHVAATMACHSSIRSGRLLHPKEMNALLRQMEATPNSSTCNHGRPTY 600

Query: 581 IKLKLSDIEKLFGR 594
           I+LKL+DIE+LFGR
Sbjct: 601 IELKLADIERLFGR 614


>gi|126463518|ref|YP_001044632.1| DNA mismatch repair protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105182|gb|ABN77860.1| DNA mismatch repair protein MutL [Rhodobacter sphaeroides ATCC
           17029]
          Length = 616

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 257/602 (42%), Positives = 380/602 (63%), Gaps = 11/602 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA + R+   IA GGK+  ++TD+G G
Sbjct: 15  IRQLDEAAINRIAAGEVVERPASAVKELVENALDAGARRIAVDIACGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT+E++P+A+ RH TSKI   D  +I +FGFRGEALPS+ AV  LT+ SR  +   GAQI
Sbjct: 75  MTAEDLPLALSRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTITSRVTEGE-GAQI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A+S  +I  VRP A+  GT+VE+RDLFF  PARL FL++++ ET  I +V+RR+A+A P+
Sbjct: 134 AVSAGRIEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVVRRLALAEPE 193

Query: 182 VSFTFSTI--KSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQG 235
           V FT +       R     ++  G+       R+++V+G +F  NA+ ++     + LQG
Sbjct: 194 VGFTLTYHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGAEFAENALRIDVAREGLRLQG 253

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG+    ++F+NGR V D+ +L  +R  Y + +   RYP  VL L  DP++V
Sbjct: 254 YAALPTYSRGSGVAQFLFVNGRPVLDRMLLGALRAGYMDVLSRDRYPAAVLNLICDPQRV 313

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR    +R  I+ ++++A+   G   S+ ++ + + +F  +       
Sbjct: 314 DVNVHPAKAEVRFREAGEVRGLIVTALRQALAGAGHRASTTVAGETLEAFRPEMPAAASP 373

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHYQLGIACAQ 412
                     +          +     P+           VE     EA    LG A AQ
Sbjct: 374 APATRIYQMDRPSAAAVARSFAFQAPEPAMPGLAEAPAARVEAPVAEEAHDRPLGAARAQ 433

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH N+I++QT  GLVIVDQHAAHERL++EK+++  + T I  Q LL PEI++L   + A 
Sbjct: 434 IHGNWILAQTASGLVIVDQHAAHERLVYEKLKRQRDETGIARQALLIPEIVELSPTDAAR 493

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++E  ++L   G+  E FG  A+A+RE+PAIL K     LLRDI+D++ D  ++  LQ R
Sbjct: 494 LLEAADELASAGLVIEPFGGGAVAVREVPAILGKVEAAPLLRDILDDLADLGSSDRLQAR 553

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           ++ +L+ MAC+GS+RSGR +++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LF
Sbjct: 554 MDAVLSRMACHGSVRSGRALRAEEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLF 613

Query: 593 GR 594
           GR
Sbjct: 614 GR 615


>gi|190575209|ref|YP_001973054.1| DNA mismatch repair protein [Stenotrophomonas maltophilia K279a]
 gi|190013131|emb|CAQ46763.1| putative DNA mismatch repair protein [Stenotrophomonas maltophilia
           K279a]
          Length = 634

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 216/627 (34%), Positives = 339/627 (54%), Gaps = 36/627 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L E +INQIAAGE++ERP+  +KEL+EN++DA +SRV+  +  GG    +I DNG 
Sbjct: 8   PIRPLPEILINQIAAGEVVERPASVVKELVENAIDAGASRVDIDLEEGGVRLIRIRDNGS 67

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+AV RH TSKI+D  D  ++ T GFRGEALPSI +VS  TL SR   +  G+
Sbjct: 68  GIAPEQLPLAVSRHATSKIADLDDLESVATLGFRGEALPSIASVSRFTLSSRRAHDEHGS 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G KI  V P A  PGT VEVR+LF+ +PAR  FL++E+ E   I + +R +A+A 
Sbjct: 128 ALQIEGGKIGEVTPRAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALAR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V    S       +        +    +++ +GEDF N AV ++     + L G+   
Sbjct: 188 PDVELRVSHNGKASRRYKPGDLYSDAR--LAETLGEDFANQAVRVDHSGAGLRLHGWIAQ 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P ++R +A+Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVNV
Sbjct: 246 PHYSRASADQQYLYVNGRSVRDRSVAHAVKMAYGDVLYHGRQPAYVLFLELDPTRVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS---------------- 343
           HPAK  +RFR+  ++ +F+ ++++ A+       S+                        
Sbjct: 306 HPAKHEVRFRDSRLVHDFVYRTLKDALADTRAGMSAQEIGAGPVHPVDAAAAPMASSAGA 365

Query: 344 -----SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                +        +       S    Q+ L LQ              P  +E    +  
Sbjct: 366 SGFGLARGPAPGAGSGGGGGGFSGWRPQQPLGLQVADAPAAYAALYAAPAGAERGAALPP 425

Query: 399 SEATH-----------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             A +             LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   
Sbjct: 426 MPAENGLPVTSADAGVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAH 485

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +   + SQ LL P  + + E E        E L  LG +  R GP ++ +R IPA+L+  
Sbjct: 486 DGIGLQSQPLLVPITLAVGEREADTAESEAETLAALGFEVTRAGPGSLHVRSIPALLAHA 545

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
               LLRD++ ++ +   +  +    + +L+TMAC+G++R+ R++   EMN LLR+ME  
Sbjct: 546 EPEGLLRDVLTDLREHGQSRRVASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEIT 605

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             S QCNHGRPT+ +  L++I++ F R
Sbjct: 606 ERSGQCNHGRPTWARFSLAEIDRWFLR 632


>gi|302383491|ref|YP_003819314.1| DNA mismatch repair protein MutL [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194119|gb|ADL01691.1| DNA mismatch repair protein MutL [Brevundimonas subvibrioides ATCC
           15264]
          Length = 617

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/616 (38%), Positives = 360/616 (58%), Gaps = 22/616 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L  + +N+IAAGE++ERP+ AIKEL+EN+LDA ++R+E    GGG S   I D+G
Sbjct: 1   MPIRRLPPETVNRIAAGEVVERPASAIKELVENALDAGATRIEVQADGGGLSRILIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD------FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            GM  +++ +AV+RH TSK+  D         I T GFRGEALPSIG+V+ LT+ SR P 
Sbjct: 61  HGMAPDQLALAVERHATSKLEPDDAGDVDLLRISTLGFRGEALPSIGSVARLTITSRSPG 120

Query: 115 NNTGAQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
            +          ++  +        G  VEVRDLF+  PARL F+KSE+ E   I++ I+
Sbjct: 121 GDAHQITVEGGDQRPVAPAGFPGPHGARVEVRDLFYATPARLKFMKSERSEAMAISEEIK 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           R A+A+  V+FT         ++      +    +R++ ++G DF  NA+ +++    I 
Sbjct: 181 RQAMAHEGVAFTLDLDGRTTLRLPAEHPGDEGRLKRLAALLGRDFEANALLIDQSREGIR 240

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           L GY G+PT++RGN    Y+F+NGR V+D+ +   +R AYA+ +   R+P  VL LEIDP
Sbjct: 241 LSGYAGLPTYSRGNGGHQYLFVNGRPVRDRLLQGALRGAYADFLARDRHPAAVLFLEIDP 300

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
             VDVNVHPAK+ +RFR+P ++R  I+ +++ A++  G   S+ ++  +++ F       
Sbjct: 301 LFVDVNVHPAKAEVRFRDPALVRGLIVGALRHALHAAGHRASTTVADSVLAGFTAHTGAA 360

Query: 353 THLPKYATS--------------LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                  +                    + +     R +  +  P     + E +     
Sbjct: 361 FSPSSQTSQGFAGGFSGWTGWDRPVAANQDIPGLSERSARVEAPPPGFTGWPEQSGAANT 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
           S+     LG A AQ+H  YI++QT DGLV+VDQHAAHERL++E+M+       +T Q LL
Sbjct: 421 SDPIDQPLGAARAQVHGTYIVAQTRDGLVVVDQHAAHERLVYERMKVQMAQGSVTRQALL 480

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           TPE+++L   E   ++   ++L  LG+  E FG  A+ +RE PA+L   ++  L+RDI D
Sbjct: 481 TPEVVELDPAEADRVLARADELAELGLIVEPFGGGAVLVRETPALLGDTDVQGLIRDIAD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++ +      L +R+  +  TMAC+GS+R+GR + + EMN LLR+ME  P+S QCNHGRP
Sbjct: 541 DLAEHGAALALSERLGEVCGTMACHGSVRAGRVLSAPEMNALLRQMEATPHSGQCNHGRP 600

Query: 579 TFIKLKLSDIEKLFGR 594
           T+++LKL D+EKLFGR
Sbjct: 601 TYVELKLHDLEKLFGR 616


>gi|75676732|ref|YP_319153.1| DNA mismatch repair protein [Nitrobacter winogradskyi Nb-255]
 gi|123745646|sp|Q3SPJ0|MUTL_NITWN RecName: Full=DNA mismatch repair protein mutL
 gi|74421602|gb|ABA05801.1| DNA mismatch repair protein MutL [Nitrobacter winogradskyi Nb-255]
          Length = 603

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 230/602 (38%), Positives = 359/602 (59%), Gaps = 8/602 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E ++N+IAAGE++ERP+  +KEL+EN++DA ++R++    GGG+    +TD+G
Sbjct: 1   MPVRQLPETVVNRIAAGEVVERPASVVKELVENAIDAGATRIDVFTDGGGRRRIGVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM   ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L + +R  +     
Sbjct: 61  AGMAKGDLALAVDRHATSKLDDEDLLGIRTLGFRGEALPSIGAVARLCITTREAREPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G + S + P A+  GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 SLTVEGGRKSEIIPAALTNGTRVEVGDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKS-NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P + FT +  +                  R+  ++G DF   A+ +  +   + ++G+  
Sbjct: 181 PDIGFTLAGEERAPVTWTAALPGAAGRLTRLGDILGGDFRAAAIPVRAEREGVIVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK IL  +R AY++ +P  R+PV  L +  DPR+VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLILGAVRAAYSDYLPRDRHPVAALFVTADPREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++     ++++F    +P+     +
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANRDGAVLTAFRPAPSPRPANWDW 360

Query: 359 ATSLTNTQEK------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
             S     +               +    L    P+     D     +     LG A  Q
Sbjct: 361 RESPAAPADARPWIGGPPAAAFAEAGQAALDVGAPSADVRFDAHPPLDLVDRPLGAARTQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH+ YI+SQT DGL++VDQHAAHER+++E+++       +  Q LL P+I++L E     
Sbjct: 421 IHETYIVSQTRDGLIVVDQHAAHERIVYERLKTALARDGVQRQILLIPDIVELDEATVEK 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +++   +L + G+  E FGP A+A+RE P++L K N   LLRD+ + + +   T  L+ R
Sbjct: 481 LIDRATELEKFGLAIESFGPGAVAVRETPSLLGKINAAALLRDLAEHMTEWEETLPLERR 540

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           + ++ ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++LKL DIEKLF
Sbjct: 541 LMHVAATMACHGSVRAGRILKPEEMNALLREMEATPNSGQCNHGRPTYVELKLDDIEKLF 600

Query: 593 GR 594
           GR
Sbjct: 601 GR 602


>gi|114331804|ref|YP_748026.1| DNA mismatch repair protein MutL [Nitrosomonas eutropha C91]
 gi|114308818|gb|ABI60061.1| DNA mismatch repair protein MutL [Nitrosomonas eutropha C91]
          Length = 608

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/610 (35%), Positives = 332/610 (54%), Gaps = 20/610 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I+ L + +I+QIAAGE+IERP+  +KEL+ENS+DA ++ +   IA GG    ++TDN
Sbjct: 1   MRAIKLLPDGLISQIAAGEVIERPASVLKELLENSIDAGATEITVNIAQGGLKLIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ +EE+P+A+ RH TSKI+  +D  +I + GFRGE L SI +VS+L+L+S  P    
Sbjct: 61  GSGIPAEELPLALTRHATSKIASQEDLHSITSLGFRGEGLASIASVSYLSLISHQPAGKH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +I   G ++ S  P +   GT VEVRDLFF +PAR  FLK+E  E     +V RRMA+
Sbjct: 121 AWEIRSEGTRLMSPEPSSHMAGTTVEVRDLFFNLPARRKFLKTEATEFAHCEEVFRRMAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++  ++FT     +    +          ERI  V+GE+F   A  ++E+S  I LQG  
Sbjct: 181 SHADITFTLRHNGN----LRSHWQAAEAAERIGAVLGEEFSGAATWMDEQSAGIGLQGML 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P ++R   +  Y F+NGR ++DK I   +R AY + + L R+   VL L IDP QVDV
Sbjct: 237 ALPAYSRATRDMQYFFVNGRFIRDKLITHALREAYRDVLHLDRHAAFVLYLAIDPEQVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQDNAPKTHL 355
           NVHP K+ +RFR    I  FI   + KA+   + G+++SS +      +      P    
Sbjct: 297 NVHPTKTEVRFREARAIHQFIYHGVSKALALPRSGVASSSPVGAVWPGAQDASVDPTRTG 356

Query: 356 PKYATSLTNTQEKLFLQENRLSTN-----------DLLPSDDPTYSEDNDPVEESEATHY 404
              A    N   +  L   R++                 +      +  +   +      
Sbjct: 357 FTPAVPTLNYPRQARLPSERVAQPFNFYQVLTGGESGATAMQNQLRQTGEGESDENPAMP 416

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A   +   YI++Q   GLVIVD HAAHER+++E+++   +   +++Q LL P    
Sbjct: 417 PLGFALGLLRGIYILAQNQKGLVIVDMHAAHERIVYEQLKTQLDQQVLSAQRLLIPVTFH 476

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
               + A + E+   L +L  +        + IR +P  L   +  +L+R ++DEI +  
Sbjct: 477 ADSLDIATVEENQALLQQLCFEVSTLSATTLVIRTVPTTLQHADAEKLVRALLDEIRNGD 536

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L  R   +LATMAC+G++R+ R++  IEMN LLR+ME    S QCNHGRPT+ ++ 
Sbjct: 537 PAQLLAARRNELLATMACHGAVRANRQLTLIEMNELLRKMEVTERSDQCNHGRPTWFEIS 596

Query: 585 LSDIEKLFGR 594
           L++++K+F R
Sbjct: 597 LAELDKMFMR 606


>gi|309781394|ref|ZP_07676130.1| DNA mismatch repair protein MutL [Ralstonia sp. 5_7_47FAA]
 gi|308919807|gb|EFP65468.1| DNA mismatch repair protein MutL [Ralstonia sp. 5_7_47FAA]
          Length = 647

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 201/631 (31%), Positives = 329/631 (52%), Gaps = 45/631 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 22  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQIQIKLEEGGVRRIAITDNGV 81

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR   +    
Sbjct: 82  GIPADELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTANDAHAT 141

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     +    +P +   GT V+V+ L+F  PAR  FLK+EQ E     +VIRR A+A 
Sbjct: 142 QI---IAQTGRAQPASGGVGTTVDVQHLYFNTPARRKFLKTEQTELGHCMEVIRRTALAR 198

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N    +     R + V+G +F    +   E + E+ L G+ G+
Sbjct: 199 PDVAISVHHNGKPLEHWNATQADS----RSAAVLGTEFARARLPFEESAGELRLFGFAGL 254

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 255 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 314

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP+K  +RFR+   +  F+  ++Q+A+++        L   + ++           P   
Sbjct: 315 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIAAAPEVAGVTTAPSPADN 374

Query: 357 --KYATSLTNTQEKLFLQENRLST-----NDLLPSDDPTYSEDNDPVEESEATH------ 403
             ++   +   Q  L + + R         D  P      +   D    +          
Sbjct: 375 TTRWINQMAARQTSLGIAQPRAEYLSMMRGDSTPMPAMRPAWMTDVPSAATLFDGGTATA 434

Query: 404 --------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                               + LG A AQ+H  Y+++Q T G+V+VD HAAHER+++E++
Sbjct: 435 QAPAAVAEPVAAPPADDDDAHPLGFAVAQLHGIYVLAQNTRGMVLVDMHAAHERILYEQL 494

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +    + ++  Q LL P        E     E  + L  LG       P  +A+R +P +
Sbjct: 495 KTALETKRVEVQPLLIPVTFAASPVEIGTAEEFRDTLTLLGFDISAVSPTTLAVRSVPTL 554

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN LLR 
Sbjct: 555 LQKADAQALARDVLRDLHAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMNALLRR 614

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 615 MEATERADQCNHGRPTWIQLTVADLDRLFLR 645


>gi|77464678|ref|YP_354182.1| DNA mismatch repair protein [Rhodobacter sphaeroides 2.4.1]
 gi|77389096|gb|ABA80281.1| DNA mismatch repair protein MutL [Rhodobacter sphaeroides 2.4.1]
          Length = 632

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/602 (42%), Positives = 382/602 (63%), Gaps = 11/602 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA + R+   IA GGK+  ++TD+G G
Sbjct: 31  IRQLDEAAINRIAAGEVVERPASAVKELVENALDAGARRIAVDIACGGKALIRVTDDGCG 90

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT++++P+A+ RH TSKI   D  +I +FGFRGEALPS+ AV  LT+ SR  +   GAQI
Sbjct: 91  MTADDLPLALSRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTITSRVAEAE-GAQI 149

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A+S  +I  VRP A+  GT+VE+RDLFF  PARL FL++++ ET  I +V+RR+A+A P+
Sbjct: 150 AVSAGRIEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVVRRLALAEPE 209

Query: 182 VSFTFSTI--KSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQG 235
           V FT +       R     ++  G+       R+++V+G +F  NA+ ++     + LQG
Sbjct: 210 VGFTLTDHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGAEFAENALRIDVAREGLRLQG 269

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG+    ++F+NGR V D+ +L  +R  Y + +   RYP  VL L  DP++V
Sbjct: 270 YAALPTYSRGSGVAQFLFVNGRPVLDRMLLGALRAGYMDVLSRDRYPAAVLNLICDPQRV 329

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR    +R  I+ ++++A+   G   S+ ++ + + +F  +       
Sbjct: 330 DVNVHPAKAEVRFREAGEVRGLIVTALRQALAGAGHRASTTVAGETLEAFRPERPAAAGP 389

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHYQLGIACAQ 412
              +      +  +       +     P+           VE     EA    LG A AQ
Sbjct: 390 GPASRIYQMDRPSVAAVARSFAFQAPEPAMPGLAEAPAARVEAPAAEEAHDRPLGAARAQ 449

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH N+I++QT  GLVIVDQHAAHERL++EK+++  + T I  Q LL PEI++L   + A 
Sbjct: 450 IHGNWILAQTESGLVIVDQHAAHERLVYEKLKRQRDETGIARQALLIPEIVELSPTDAAR 509

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++E  ++L   G+  E FG  A+A+RE+PAIL K     LLRDI+D++ D  ++  LQ R
Sbjct: 510 LLEAADELASAGLVIEPFGGGAVAVREVPAILGKVEAAPLLRDILDDLADLGSSDRLQAR 569

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           ++ +L+ MAC+GS+RSGR +++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LF
Sbjct: 570 MDAVLSRMACHGSVRSGRALRAEEMNPLLREMEATPLSGQCNHGRPTYVELKLADIERLF 629

Query: 593 GR 594
           GR
Sbjct: 630 GR 631


>gi|87122647|ref|ZP_01078524.1| DNA mismatch repair protein [Marinomonas sp. MED121]
 gi|86162105|gb|EAQ63393.1| DNA mismatch repair protein [Marinomonas sp. MED121]
          Length = 637

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 223/633 (35%), Positives = 361/633 (57%), Gaps = 40/633 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  +  GG    +I DNG 
Sbjct: 3   RINLLSPRLANQIAAGEVVERPASVVKELLENSLDAGATQLDVEVEQGGVRQIKIRDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI   DD   + + GFRGEAL SI +VS L L S+        
Sbjct: 63  GIVKDDLPLALSRHATSKIHTLDDLEAVQSLGFRGEALASISSVSRLLLTSKAKGEQDAW 122

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++   G+ + ++V+P +   GT +EVRDLFF  PAR  FL++++ E N +++V++R+A++
Sbjct: 123 RVEAEGKDMGANVKPASHPEGTCIEVRDLFFNTPARRKFLRTDKTEFNHLSEVVKRLALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F  S      Y +   +   +   R++ ++G+ F+ NA+ ++ ++  + L G+ G
Sbjct: 183 RYDVAFRLSHDGKQVYDLRAVTDQMHAEHRLATLLGKSFVQNALAIDVEAAGLRLWGWIG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 243 LPTFSRSQADLQYFFVNGRVVKDKLVAHAVRQAYRDVLYNGRHPTFVLYLELDPATVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ----------- 347
           VHP K  +RFR+  ++ +F+   I K +       ++ L     ++  Q           
Sbjct: 303 VHPTKHEVRFRDGRLVHDFLFSKIHKVLADVRPEATAELDVVDNAAVSQSITQQDSLTLS 362

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE---------------- 391
           + +P T       S  +      +   ++S    + S    ++                 
Sbjct: 363 NRSPMTPGAMGDVSWMSAASSAPVTSGQVSGQMGVMSQMADFAHQVTSSDVPVSNVNPLT 422

Query: 392 ---------DNDPVEESEATHYQL-GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                      D V E+E +     G A AQ+H  YI+S+   GL++VD HAAHER+++E
Sbjct: 423 GEVIERAPMYKDGVAEAERSGMPPLGFAIAQLHGIYILSENQHGLIVVDMHAAHERILYE 482

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           KM+  F + +I SQ LL P  I + + E  L+ E DE     G++ ER GP +I +RE+P
Sbjct: 483 KMKNAFYAKQIVSQPLLVPINISVAQSEADLVEEADEVFSSFGLRVERSGPESIMVREVP 542

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
            ILS+ ++  L+RD++ ++I   TT  L+ R   ++ATMAC+GS+R+ RK+   EMN LL
Sbjct: 543 VILSQGHVENLVRDVVSDLIMHGTTDILEARSNELMATMACHGSVRANRKLTIAEMNSLL 602

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ME    S QCNHGRPT+ ++ +S+++KLF R
Sbjct: 603 RDMEITERSGQCNHGRPTWTQMTMSELDKLFLR 635


>gi|92118635|ref|YP_578364.1| DNA mismatch repair protein [Nitrobacter hamburgensis X14]
 gi|123083577|sp|Q1QIP3|MUTL_NITHX RecName: Full=DNA mismatch repair protein mutL
 gi|91801529|gb|ABE63904.1| DNA mismatch repair protein MutL [Nitrobacter hamburgensis X14]
          Length = 603

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 230/602 (38%), Positives = 363/602 (60%), Gaps = 8/602 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E ++N+IAAGE++ERP+  +KEL+EN++DA + R++    GGG+    ITD+G
Sbjct: 1   MPVRQLPETVVNRIAAGEVVERPASVVKELVENAIDAGAGRIDIFTDGGGRRRIGITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV RH TSK+ D D   I T GFRGEALPSIGAV+ L + +R        
Sbjct: 61  GGMTKADLALAVDRHATSKLDDEDLLRIRTLGFRGEALPSIGAVAKLGITTRHGSEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G + S++ P A+  GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 SLTVEGGRKSAIVPAALTQGTRVEVSDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKS-NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF  +A+ +  + + +T++G+  
Sbjct: 181 PDIAFTLAGEERAPVTWTAALPGAAGQLTRLGDILGADFRCSAIAVRAERDGVTVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK I+  +R AY++ +P  R+PVV L +   P++VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLIIGAVRAAYSDYLPRDRHPVVALFVTTAPQEVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFRN  ++R  I+ ++++ + ++G  T++     ++++F     P+     +
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKEGLAREGRRTAANSDGAVLTAFRPAAVPRPANWDW 360

Query: 359 ATSLTNT------QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
             S  +                            P+    +DP   ++     LG A  Q
Sbjct: 361 RQSPASPVGAGPWSGGATAAAFAAPGQTAFDVGAPSADVRSDPNPVADLIDRPLGAARTQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH+ YI++QT DGL++VDQHAAHER+++EK++       +  Q LL P+I++L E     
Sbjct: 421 IHETYIVTQTRDGLIVVDQHAAHERIVYEKLKAALERDGVQRQILLIPDIVELDEATVEK 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +++   +L + G+  E FGP A+A+RE P++L K N   LLRD+ + + +      L+ R
Sbjct: 481 LIDRAPELEKFGLAIESFGPGAVAVRETPSLLGKTNAAALLRDLAEHMAEWDEALPLERR 540

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           + ++ ATMAC+GS+R+GR ++  EMN LLREME  PNS QCNHGRPT+++LKL+DIEKLF
Sbjct: 541 LMHVAATMACHGSVRAGRILKPEEMNALLREMEDTPNSGQCNHGRPTYVELKLADIEKLF 600

Query: 593 GR 594
           GR
Sbjct: 601 GR 602


>gi|92113401|ref|YP_573329.1| DNA mismatch repair protein [Chromohalobacter salexigens DSM 3043]
 gi|123387512|sp|Q1QY28|MUTL_CHRSD RecName: Full=DNA mismatch repair protein mutL
 gi|91796491|gb|ABE58630.1| DNA mismatch repair protein MutL [Chromohalobacter salexigens DSM
           3043]
          Length = 644

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 200/637 (31%), Positives = 337/637 (52%), Gaps = 44/637 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L  ++ NQIAAGE++ERP+  +KEL+EN++DA S R+E  +  GG    ++ D+G 
Sbjct: 6   RIHILDPRLANQIAAGEVVERPASVVKELVENAIDAGSQRIEIDLESGGARLIRVRDDGR 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-G 118
           G+  E++P+A+ RH TSKI+  DD   + + GFRGEAL SI +VS L L+S      + G
Sbjct: 66  GIDQEDLPLALSRHATSKIASLDDLEGVDSLGFRGEALASISSVSRLELISNTHDEPSDG 125

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            ++   G ++     P     G+ V VRDLFF  PAR  FL++E+ E   + +  RR+A+
Sbjct: 126 WRVVAEGRQMEPRVTPAPHPRGSSVVVRDLFFNTPARRKFLRTEKTEFGHVEEAFRRLAL 185

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   + +     +   +++     + +   R+  ++G  F+ NA+ ++ ++  + L G+ 
Sbjct: 186 SRYDIGWILRHNQKVVHQLRAGDASTSMERRVGALLGRKFLENALHVDIEATGLRLWGWV 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT +R  A+Q Y F+NGR V+D+ +   +R AY + +  GR+PV VL LE+DP  VDV
Sbjct: 246 GLPTHSRAQADQQYFFVNGRVVRDRLVAHAVRQAYRDVMFHGRHPVFVLYLELDPHVVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK----------------- 340
           NVHP K  +RFR+  ++ +F+  S+ +A+     + +S                      
Sbjct: 306 NVHPTKHEVRFRDGRLVHDFLFSSLHRALADVRPNATSTEGGDEATPSTDATTATAAEAS 365

Query: 341 -------------MISSFHQDNAPKTH-----LPKYATSLTNTQEKLFLQENRLSTNDLL 382
                         +++  +   P  H     +  Y       +  L   + + +  +  
Sbjct: 366 AGQAEPRWQQQGMALAAGQERERPAAHRVREFMAGYRALHPEHEASLLTPQPQEAAEEAA 425

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            +  P  S      E  +     LG A AQ+H  YI+SQT  GLV+VD HAAHER+ +E+
Sbjct: 426 GTPAPPASSSPAMAETDDTQAPPLGYAVAQLHGVYILSQTERGLVVVDMHAAHERITYER 485

Query: 443 MRQDFNSTK-----ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           M+Q  +        + +Q LL P  I     E            RLG++ +  GP  + +
Sbjct: 486 MKQQVHGDGQALGRLQTQPLLVPVSIAASAREVETAENERATFERLGVELDVAGPETLLV 545

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           R++P +L   ++  L+ D++ ++     +  L+  I  +L++MAC+GS+R+ R++   EM
Sbjct: 546 RQVPVLLGNADVEALIHDMLGDLERFGRSDRLEVHINELLSSMACHGSVRANRRLTVPEM 605

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N LLR+ME+   S QCNHGRPT+ ++ + +++KLF R
Sbjct: 606 NALLRDMERTERSGQCNHGRPTWTEMSMHELDKLFLR 642


>gi|237748580|ref|ZP_04579060.1| DNA mismatch repair protein mutL [Oxalobacter formigenes OXCC13]
 gi|229379942|gb|EEO30033.1| DNA mismatch repair protein mutL [Oxalobacter formigenes OXCC13]
          Length = 629

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 209/606 (34%), Positives = 333/606 (54%), Gaps = 18/606 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L++ +I+QIAAGE++ERPS  +KEL+EN++DA S+++E  +  GG     I DNG 
Sbjct: 27  SIQLLTDTLISQIAAGEVVERPSAVVKELLENAVDAGSTQIEIRLENGGIKRIAIIDNGC 86

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A+ RH TSKI+   D  N+ T GFRGEAL SI +V+ LTL SR  +     
Sbjct: 87  GIPPEQLRLALTRHATSKIASLNDLENVATLGFRGEALASIASVADLTLQSRTAEEPHAW 146

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+  +     ++ P +   GT V+V +L+   PAR  FLKSEQ E     +V+RR+A+A 
Sbjct: 147 QMRGNDPT-GTLSPCSGGFGTTVDVHELYSNTPARRKFLKSEQTEYGHCAEVVRRIALAQ 205

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS----NEITLQG 235
           P + FT         + N      N  +R +QV+GE F  + + ++       N + L G
Sbjct: 206 PGIRFTLMHNGKATAQWNAH----NLSQRCNQVLGEQFAQSQLPIDITVGEGANSLRLYG 261

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           + G PT +R   +  Y ++NGR V+D+ +   +R AY + +   RYP  +L L +DP  V
Sbjct: 262 FIGQPTASRTRGDMQYFYVNGRFVRDRLLTHAVRAAYEDVLHGNRYPAYLLYLTLDPSLV 321

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK----KGISTSSVLSKKMISSFHQDNAP 351
           DVNVHPAK  +RFR+   I +FI QS+ + + +       +  S+   +  +        
Sbjct: 322 DVNVHPAKIEVRFRDSRSIHHFIHQSVSRTLAQTMEPHAAADESIAYAETPARSPVSWHS 381

Query: 352 KTHLP-KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND--PVEESEATHYQLGI 408
            T  P  Y             +++R              +E +D   ++E     + LG 
Sbjct: 382 NTPSPVSYGVEQKTASYGALFRQSREQEESHSSPLPMPATELSDLFRIDEKTEEDFPLGF 441

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H  YI++Q   GLV+VD HAAHER+++EK++   +   + +QTLL P  + + E 
Sbjct: 442 ALAQLHDIYILAQNRHGLVLVDMHAAHERIVYEKLKTALDEKTLQTQTLLIPVTMKVSEV 501

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E    +E+ E L  LG       P  IA+R +P +L + +    LR+I+ ++ +  T+  
Sbjct: 502 EAGTALENRETLQELGFDISALTPETIAVRTVPTLLREADTANALRNILRDMHEYGTSSI 561

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
            +++   +LAT+AC+ ++R+ R +   EMN LLR+ME+   + QCNHGRPT+ +L LS++
Sbjct: 562 AKEKRNELLATVACHNAVRANRSLTITEMNALLRQMEQTERADQCNHGRPTWTQLGLSEL 621

Query: 589 EKLFGR 594
           + LF R
Sbjct: 622 DALFLR 627


>gi|152980279|ref|YP_001352152.1| DNA mismatch repair protein [Janthinobacterium sp. Marseille]
 gi|166232093|sp|A6SV55|MUTL_JANMA RecName: Full=DNA mismatch repair protein mutL
 gi|151280356|gb|ABR88766.1| DNA mismatch repair protein [Janthinobacterium sp. Marseille]
          Length = 613

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 204/606 (33%), Positives = 331/606 (54%), Gaps = 17/606 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS+++I+QIAAGE++ERPS  +KEL+EN+LDA ++ +   +  GG     ITDNG 
Sbjct: 10  PIQPLSDQLISQIAAGEVVERPSAVVKELLENALDAGATAITVRLEQGGVKRIAITDNGR 69

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+T E++P+A+ RH TSKI+   +  N+ T GFRGEAL SI +V+ LTL SR        
Sbjct: 70  GITPEQLPLALARHATSKINSLNELENVGTLGFRGEALASIASVAQLTLTSRTADAQHAW 129

Query: 120 QI--AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           +I      ++ ++V P +  PGT V+V+DL+F  PAR  FLK+EQ E     +V+RR+A+
Sbjct: 130 EISGVQGSDQKNTVAPSSGAPGTTVDVQDLYFNTPARRKFLKTEQTEFGHCAEVVRRIAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+F+ S                +  +R + ++G +F    + L E +  + L G+ 
Sbjct: 190 SRPDVAFSLSHNGKTVDHW----AVNDIAKRSAHILGSEFSGARLPLEETAGPLHLHGFI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT ++   +  Y ++NGR V+DK ++  +R+AY + +   RYP  V+ L++DP  VDV
Sbjct: 246 GLPTASKARGDAQYFYVNGRFVRDKLLMHAVRSAYQDVLHGDRYPSYVISLDLDPALVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-----KGISTSSVLSKKMISSFHQDNAPK 352
           NVHP+K  +RFR+   +  F+  ++ +A+ +      G   S   +      + ++    
Sbjct: 306 NVHPSKIEVRFRDSRSVHQFVFHAVSRALAQTSATAFGAVPSPTPAPSGALPWLREQQQT 365

Query: 353 THLPKYATSLTNTQEKLF----LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
           T  P++       Q           +   T           +  N P +      + LG 
Sbjct: 366 TFAPQFQQQYGVAQTTANYGALFNTDGAVTPLGTEPAPAFAAFTNSPAQTMSDDEFPLGF 425

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H  +I++Q T GLV+VD HAAHER+++E+++   +   +  Q LL P      + 
Sbjct: 426 ALAQLHGIFILAQNTKGLVLVDMHAAHERILYEQLKNALDDNAMQVQPLLIPITFYADDV 485

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E     +  E L  LG       P  +AIR +P +L   +   L RD++ ++ +   +  
Sbjct: 486 EVGTAEDSKETLLSLGFDIAVMSPTTLAIRAVPTLLKNADAQSLARDVLRDVREYGGSRV 545

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           L +R   +L T+AC+ ++R+ R +   EMN LLR+ME    + QCNHGRPT+++L LSD+
Sbjct: 546 LVERRNELLGTLACHTAVRANRMLTGPEMNALLRQMEATERADQCNHGRPTWVQLGLSDL 605

Query: 589 EKLFGR 594
           +KLF R
Sbjct: 606 DKLFER 611


>gi|94311840|ref|YP_585050.1| DNA mismatch repair protein [Cupriavidus metallidurans CH34]
 gi|93355692|gb|ABF09781.1| methyl-directed mismatch repair protein [Cupriavidus metallidurans
           CH34]
          Length = 655

 Score =  551 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 206/643 (32%), Positives = 336/643 (52%), Gaps = 57/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++++   +  GG     ITDNG 
Sbjct: 18  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLGIRLEEGGVRRIVITDNGC 77

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++E+P+A+ RH TSKI+  D+  ++ T GFRGEAL SI +VSHL L SR        
Sbjct: 78  GIPADELPVALMRHATSKIASLDELESVLTLGFRGEALASIASVSHLVLTSRTATATHAT 137

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI+        ++P +   GT+++V+ L+F  PAR  FLKSEQ E     ++IRR A+A 
Sbjct: 138 QISADT---GHLQPASGGVGTMIDVQHLYFNTPARRKFLKSEQTELGHCLEMIRRAALAR 194

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N     G+   R +QV+G DF    + L+E+++ + L G+ G+
Sbjct: 195 PDVTISVHHNGKPLEHWNA----GDVATRTAQVLGSDFARARLPLDEQADALHLYGFAGL 250

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG  +Q Y F+NGR V+DK +   +R+AY + +   R+P  V+ L++ P  VDVNV
Sbjct: 251 PTASRGRPDQQYFFVNGRFVRDKLLNHAVRSAYQDVLHGDRFPSYVICLDLPPELVDVNV 310

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH----- 354
           HP+K  +RFR    +  F+  ++Q+ + ++       L  ++     + + P        
Sbjct: 311 HPSKIEVRFRESRAVHQFVYHAVQRCLARQAGEQGDSLHSEIADEAGRPSMPAARPVGAP 370

Query: 355 --------------------------------------LPKYATSLTNTQEKLFLQENRL 376
                                                          + Q   +L + + 
Sbjct: 371 GAPGAAPQWVNYSAGRQTELGIAQPRQAYLGMVRDAAGQGSARPWQPSPQPPAWLADAQA 430

Query: 377 STNDLLPS-----DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
           +  D  P                P        + LG A AQ+H  Y+++Q   GLV+VD 
Sbjct: 431 ARADEPPGLLDRLPQQPLQPSTLPAAGEGDDDHPLGYAVAQLHGIYVLAQNARGLVLVDM 490

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAAHER+++E+++    + ++  Q LL P  +     E     EH E L  LG   +   
Sbjct: 491 HAAHERILYEQIKTALEARELAVQPLLIPVTLPASPVEIGAAEEHQETLQLLGFDIKPVS 550

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
           P  +A+R IPA+L + +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ RK
Sbjct: 551 PTTLAVRAIPALLKQADTEALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANRK 610

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   EMN LLR+ME+   + QCNHGRPT+++L ++++++LF R
Sbjct: 611 LTVEEMNALLRQMEQTERADQCNHGRPTWVQLTVAELDRLFLR 653


>gi|319784249|ref|YP_004143725.1| DNA mismatch repair protein MutL [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170137|gb|ADV13675.1| DNA mismatch repair protein MutL [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 624

 Score =  551 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 273/624 (43%), Positives = 400/624 (64%), Gaps = 31/624 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+  +KEL+EN+LDA +SRVE V +GGG +  ++TD+G
Sbjct: 1   MPIRQLSETMINQIAAGEVIERPASVVKELVENALDAGASRVEIVTSGGGLNLIRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+   E+ +A+ RHCTSK+++D ++I + GFRGEALPSIG+VS L++ SR   +++ A+
Sbjct: 61  SGIPERELALAIARHCTSKLTEDINDIRSLGFRGEALPSIGSVSRLSIRSRTAASDSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++  VRP A N GT VEVRDLFF  PARL F+K E+ E++  +DV++R+AIA+P
Sbjct: 121 IGIEGGRVLPVRPAAANRGTTVEVRDLFFATPARLKFMKGERAESSATSDVVKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            V FT +    +  ++     S  G+    ++QV+G DF +N++ L+   + + L G+  
Sbjct: 181 AVRFTLAGSDRSTLELPAADDSAEGSLRR-VAQVMGTDFPDNSIALDAMRDGVHLTGHAS 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           IP+F R NA Q Y ++NGR V+DK I   IR AYA+ +P  R+ V VL L +DP  VDVN
Sbjct: 240 IPSFTRANALQQYAYVNGRPVRDKLIAGAIRGAYADVLPRDRHAVTVLFLTLDPAIVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ----------- 347
           VHPAK+ +RFR+P ++R  I+ +I++A+   G+  ++  +  M+++F             
Sbjct: 300 VHPAKADVRFRDPGLVRGLIVGAIRQALADAGVRAATTGAAGMMAAFRPGAASYGHGGPA 359

Query: 348 ------DNAPKTHLPKYATSLTNTQEKLF-------LQENRLSTNDLLPSDDPTYSEDND 394
                 D A +   P       + Q  L         ++  L  ++    D    +  + 
Sbjct: 360 NGHRSYDAAYRASGPSGFDPARSPQRPLDMGFDGAGFEQRGLRESEQAAFDAGPLASADA 419

Query: 395 PVEESEATHYQLGIACA----QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
              + EA    LG        Q+H+NYI++QT D L+IVDQHAAHERL++E ++   +S 
Sbjct: 420 RAGQDEAAETLLGAVLGAARAQVHENYIVAQTRDSLIIVDQHAAHERLVYEALKNALHSR 479

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            + SQ LL PEIIDL E +   +  H E L R G+  ERFGP A+A+RE P++L + N+ 
Sbjct: 480 PVPSQMLLLPEIIDLPEEDAERLALHSETLARFGLGIERFGPGAVAVRETPSMLGEANVQ 539

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           QL+RD+ DEI D+ T  TL++R++ I ATMAC+GS+RSGR +++ EMN LLR+ME  P S
Sbjct: 540 QLVRDLADEIADNDTVDTLKERLDKIAATMACHGSVRSGRLLKAEEMNALLRQMEATPGS 599

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 600 GTCNHGRPTYIELKLADIERLFGR 623


>gi|153010372|ref|YP_001371586.1| DNA mismatch repair protein [Ochrobactrum anthropi ATCC 49188]
 gi|166232099|sp|A6X3F3|MUTL_OCHA4 RecName: Full=DNA mismatch repair protein mutL
 gi|151562260|gb|ABS15757.1| DNA mismatch repair protein MutL [Ochrobactrum anthropi ATCC 49188]
          Length = 626

 Score =  551 bits (1421), Expect = e-155,   Method: Composition-based stats.
 Identities = 275/626 (43%), Positives = 395/626 (63%), Gaps = 33/626 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V  GGGK+  ++TDNG
Sbjct: 1   MPIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTGGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +E+P+AV RHCTSK+SDD  +I   GFRGEALPSIG+V+ LTL SRP   ++G +
Sbjct: 61  SGIPVDELPLAVSRHCTSKLSDDVHDIRALGFRGEALPSIGSVAKLTLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +++SG  +   RP A+N GTI EVRDLFF  PARL F+K+++ E + ITDV++R+AIA+P
Sbjct: 121 VSVSGGHLDGPRPSALNRGTIAEVRDLFFATPARLKFMKTDRAEASAITDVVKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            V F+ +       ++    S      ERI+QV+G++F  NA+ ++ + + + L G+ GI
Sbjct: 181 HVRFSLAGTDRTPLELAATGSGAEATLERINQVLGKEFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ NRGNA   + ++NGR V+DK +   +R AYA+ +   R+PV VL L +DP  VDVNV
Sbjct: 241 PSHNRGNALHQFAYVNGRPVRDKQLFGALRGAYADVMARDRHPVAVLFLTLDPAFVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  +  M+ +F  +   +   P + 
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGADAMLQAFRAEGF-QPPSPSFT 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED--------------------------- 392
           +  ++           +S+     S    +                              
Sbjct: 360 SRPSSAGYASGSWHPAVSSPRTEWSPQTAHPAHRPLDLGAAPSFQESDQATLATVNVLAA 419

Query: 393 ----NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      E     LG A AQIH NYI+SQT D LVIVDQHAAHERL++E ++   +
Sbjct: 420 DARATRDEAPVELQQKPLGAARAQIHANYIVSQTEDSLVIVDQHAAHERLVYEALKNALH 479

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           S  I+ Q LL PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N
Sbjct: 480 SRPISGQMLLIPEIVDLPEEDAERLATHAETLARFGLGIEQFGPGAIAVRETPAMLGEMN 539

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
           + QL+RD+ DEI +  T+  L+  + ++ ATMAC+GS+RSGR+++  EMN LLREME  P
Sbjct: 540 VQQLIRDLSDEIAEHDTSEGLKAMLNHVAATMACHGSVRSGRRLKPEEMNALLREMEATP 599

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S  CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 600 GSGTCNHGRPTYIELKLTDIERLFGR 625


>gi|295691031|ref|YP_003594724.1| DNA mismatch repair protein MutL [Caulobacter segnis ATCC 21756]
 gi|295432934|gb|ADG12106.1| DNA mismatch repair protein MutL [Caulobacter segnis ATCC 21756]
          Length = 638

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/637 (37%), Positives = 377/637 (59%), Gaps = 43/637 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L  + +N+IAAGE++ERP+ AIKEL++N++DA ++R+E    GGG +   + D+G
Sbjct: 1   MPIRRLPPETVNRIAAGEVVERPASAIKELVDNAIDAGATRIEVEAHGGGLTRILVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD------FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            G+++EE+P+A++RH TSK++ D         IHT GFRGEALPSIG+V+ L + SR   
Sbjct: 61  CGLSAEELPVAIERHATSKLAPDADGLWDLLRIHTMGFRGEALPSIGSVARLQISSRAKG 120

Query: 115 NNTGAQIAISGEKISSVRPV--AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                 I + G ++  V P       G  +EVRDLF+  PARL F+KSE+ E   IT+ I
Sbjct: 121 EKDAFSILVEGGQVGDVAPAAFPGPHGARIEVRDLFYATPARLKFMKSERAEALAITEEI 180

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +R A+A   V F+         ++            R++ V+G +F  NA+E+++  + +
Sbjct: 181 KRQAMANESVGFSLDIDGRRVLRLPPEHPGPQGRLARLAAVLGREFQENALEIDQVRDGV 240

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L G+ G+PT+NRGNA   Y+F+NGR V+D+ +   +R AYA+ +   R+P   L + +D
Sbjct: 241 RLSGFAGLPTYNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHPTAALYVTLD 300

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
             +VDVNVHPAK+ +RFR+P ++R  I+ +++ A+   G   S+ ++ + + S     +P
Sbjct: 301 TAEVDVNVHPAKAEVRFRDPALVRGLIVGALRHALAGAGHRASTTVAAQALDSIRAQQSP 360

Query: 352 KT-HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES----------- 399
              + P  + +  +   +           ++   D P  +E +  VE S           
Sbjct: 361 FPGYQPGPSAAGFSAWREGGWAPPTQRPLNMQSMDLPGLNEVSARVEPSYGGELAEVVRE 420

Query: 400 ----------------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                                 +   Y LG A AQ+H+ YI++QT DG+VIVDQHAAHER
Sbjct: 421 AYASVAFEDRPITDHPSAAAPFDPVDYPLGAARAQVHETYIVAQTRDGMVIVDQHAAHER 480

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L++E+M+ +  +  +  QTLL PE++DL   E   ++   E+L  LG+  E FGP A+ +
Sbjct: 481 LVYERMKGEMAAGGVARQTLLLPEVVDLDPAEAERVIARAEELANLGLVIESFGPGAVLV 540

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           RE PA+L K +   L+RDI D++ ++     L++R+E + +TMAC+GS+R+GR++   EM
Sbjct: 541 RETPALLGKTDAAGLIRDIADDLAENGAALALKERLEEVCSTMACHGSVRAGRRLNGAEM 600

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N LLREME  P+S QCNHGRPT+++LKL+DIEKLFGR
Sbjct: 601 NALLREMEATPHSGQCNHGRPTYVELKLADIEKLFGR 637


>gi|300310168|ref|YP_003774260.1| DNA mismatch repair protein [Herbaspirillum seropedicae SmR1]
 gi|300072953|gb|ADJ62352.1| DNA mismatch repair protein [Herbaspirillum seropedicae SmR1]
          Length = 627

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/626 (33%), Positives = 330/626 (52%), Gaps = 39/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L +++I+QIAAGE+IERPS  +KEL+EN+LDA S+++   +  GG     ITDNG 
Sbjct: 6   PIQALPDQLISQIAAGEVIERPSAVVKELLENALDAGSTQITVRLEQGGVKRIAITDNGR 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A+ RH TSKI+   D  N+ T GFRGEAL SI +V+ LT+ SR        
Sbjct: 66  GIPPEQLPLALARHATSKIASLTDLENVSTLGFRGEALASIASVAQLTVTSRTADAPHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I  S  +  +V P +   GT ++V+DL+F  PAR  FLKSEQ E     +V+RR+A+A 
Sbjct: 126 EITGS--QFGTVAPASGAQGTTIDVQDLYFNTPARRKFLKSEQTEYGHCAEVVRRIALAR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF+ S         N     G F +R + ++G++F N  + L+E +  + L G+ G+
Sbjct: 184 PDVSFSLSHNGKTVDHWNV----GEFAKRSAHILGDEFANARLPLDESAGPLRLHGFVGL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT ++  A+  Y ++NGR V+DK +   +R AY + +   RYP   L L +DP  VDVNV
Sbjct: 240 PTASKARADGQYFYVNGRFVRDKLLTHAVRAAYQDVLHGDRYPAYALSLTLDPALVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------- 344
           HP+K  +RFR+   +  F+  ++ +A+ +    +   L      S               
Sbjct: 300 HPSKIEVRFRDSRAVHQFVFHAVSRALAQTSAVSFGNLPGAAPQSDDSAGAPPPAANAPL 359

Query: 345 -----FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
                  Q +                     +++N  +   +  S   +   D       
Sbjct: 360 PWIGEQQQQSFSAQFAEAPRPFSFGGNSGFGVRQNTEAYGSMFRSAPTSGEPDGSAPAAY 419

Query: 400 EAT-----------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            AT            + LG A AQ+H  Y+++Q   GLV+VD HAAHER+++E+++   +
Sbjct: 420 GATPAAAPAALPEGDFPLGFALAQLHGIYVLAQNQAGLVVVDMHAAHERILYEQLKTALD 479

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             ++  Q LL P        E   + EH E L  LG       P  +A+R +PA+L   +
Sbjct: 480 GNEMFVQPLLIPVTFYADPVEVGTVEEHQETLSALGFDIAVMSPTTLAVRAVPALLKNAD 539

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              L RD++ ++ +   +  L +R   +L T+AC+ ++R+ R +   EMN LLR+ME   
Sbjct: 540 AQTLARDVLRDVREYGGSRVLLERRNELLGTLACHTAVRANRSLTLPEMNALLRQMEATE 599

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S QCNHGRPT+ ++ LSD++KLF R
Sbjct: 600 RSDQCNHGRPTWTQMGLSDLDKLFLR 625


>gi|253996214|ref|YP_003048278.1| DNA mismatch repair protein MutL [Methylotenera mobilis JLW8]
 gi|253982893|gb|ACT47751.1| DNA mismatch repair protein MutL [Methylotenera mobilis JLW8]
          Length = 610

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 206/610 (33%), Positives = 335/610 (54%), Gaps = 21/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A+KEL+ENSLDA S+ ++  +  GG    ++TDNG 
Sbjct: 3   TIRLLPDQLISQIAAGEVVERPASALKELLENSLDAGSTDIQVSLLQGGIKQMRVTDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A+ RH TSKIS  +D  ++ + GFRGEAL SI ++S   L+SR   +    
Sbjct: 63  GVAKEDLMLALTRHATSKISSLEDLESVASLGFRGEALASIASISRTQLLSRQSGSKHAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G ++S++ P A++ GT++EV DL+F  PAR  FLK+E  E     ++  R+A++ 
Sbjct: 123 RIGSEGSEVSTIEPAALDAGTVIEVSDLYFNTPARRKFLKTEATEFGHCEEMFTRIALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VS           +       G    R S+V+G +F+  ++ ++E +  + L G    
Sbjct: 183 PDVSLMLQHNGRALSRF----AIGQPERRFSEVLGSEFVAESIPVDESAAGLRLWGMAAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTFNR + +  YV++NGR V+DK I   IR AY + +   R+P  VL LE+DP  VDVNV
Sbjct: 239 PTFNRNSRDTQYVYVNGRFVRDKVIAHAIRQAYQDVLHHDRHPAFVLFLELDPSLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+   +  FI  ++ KA+      +++V + +   +        T L    
Sbjct: 299 HPAKTEVRFRDSQAVHRFIFHALHKALAIPTGVSNAVTANQAQYNPFSPQVSNTALANGG 358

Query: 360 TSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSED---------NDPVEESEATHYQLGI 408
                 Q    L   E       L  ++    +           ++ ++      Y LG 
Sbjct: 359 MLYPTQQSQINLSAHEPAGFYQTLFGNNANQPATPATLTLDVLADNSLKAESINEYPLGF 418

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A  Q+H  Y+++Q  +GLV++D HAAHER+++EK++   +S  +  Q LL P   +  + 
Sbjct: 419 AVGQVHGVYVLAQNKEGLVVIDMHAAHERIMYEKLKHALDSQTVQMQPLLLPVSFNADKL 478

Query: 469 ECALIME----HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           E A + E    +   L +LG       P  +A+R +P +L   +   L RD++ ++ +  
Sbjct: 479 EVATVHEALAGNQATLQQLGFDIAILSPTTLAVRAVPTMLQDADAVILARDVLRDLREYG 538

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +  L +R   +L TMAC+ ++R+ R +   EMN LLR+ME    S QCNHGRPT+ ++ 
Sbjct: 539 ASRVLTERRNELLGTMACHAAVRANRSLTIPEMNALLRDMEATERSGQCNHGRPTWFQVS 598

Query: 585 LSDIEKLFGR 594
           + D++K+F R
Sbjct: 599 MGDLDKMFMR 608


>gi|260464400|ref|ZP_05812591.1| DNA mismatch repair protein MutL [Mesorhizobium opportunistum
           WSM2075]
 gi|259029870|gb|EEW31155.1| DNA mismatch repair protein MutL [Mesorhizobium opportunistum
           WSM2075]
          Length = 641

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/624 (44%), Positives = 396/624 (63%), Gaps = 31/624 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+  +KEL+EN+LDA +S+VE V AGGG +  ++TD+G
Sbjct: 18  MPIRQLSETMINQIAAGEVIERPASVVKELVENALDAGASKVEVVTAGGGLNLIRVTDDG 77

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+   E+ +A+ RHCTSK+++D  +I + GFRGEALPSIG+VS L++ SR    ++ A+
Sbjct: 78  SGIPEHELSLAIARHCTSKLAEDIHDIRSLGFRGEALPSIGSVSRLSIRSRTALGDSAAE 137

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I  VRP A N GT VEVRDLFF  PARL F+K E+ E++ I+DV++R+AIA+P
Sbjct: 138 IGIEGGRILPVRPAAANRGTTVEVRDLFFATPARLKFMKGERAESSAISDVVKRIAIAFP 197

Query: 181 KVSFTFSTIKSNRYKMNFQ--STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            V FT +    +  ++     S  G+    ++QV+G +F +N++ ++     + L G+  
Sbjct: 198 AVRFTLAGSDRSTLELPATDESAEGSLRR-VAQVMGAEFPDNSIAIDAMREGVHLTGHVS 256

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           IP+F R NA Q Y ++NGR V+DK I   IR A+A+ +P  R+ V VL L +DP  VDVN
Sbjct: 257 IPSFTRANALQQYAYVNGRPVRDKLIAGAIRGAFADVLPRDRHAVTVLFLTLDPGTVDVN 316

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA------PK 352
           VHPAK+ +RFR+P ++R  I+ +I++A+   GI +++  +  M+++F    A      P 
Sbjct: 317 VHPAKADVRFRDPGLVRGLIVGAIRQALADAGIRSATTGAAGMMAAFRPSAASYGHGGPA 376

Query: 353 THLPKYATSLTNTQEKLF------------------LQENRLSTNDLLPSDDPTYSEDND 394
                Y  S   +    F                   +   L   D    D    +  + 
Sbjct: 377 NGHRSYEASYHASGSAGFDPARSSQRPLDMGFEGGGFEHRGLREPDQAAFDAGPLASADA 436

Query: 395 PVEESEATHYQLGIACA----QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
              +SEA    LG        Q+H+NYI++QT D LVIVDQHAAHERL++E ++   +S 
Sbjct: 437 RAGQSEAAETLLGAVLGAARAQVHENYIVAQTRDSLVIVDQHAAHERLVYEALKNALHSR 496

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            + SQ LL PEIIDL E +   +  H E L R G+  ERFGP A+A+RE P++L + N+ 
Sbjct: 497 PVPSQMLLLPEIIDLPEEDAERLAMHSETLARFGLGIERFGPGAVAVRETPSMLGETNVG 556

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           QL+RD+ DEI D+ T  TL++R++ I ATMAC+GS+RSGR ++  EMN LLR+ME  P S
Sbjct: 557 QLVRDLADEIADNDTVETLKERLDKIAATMACHGSVRSGRLLKPEEMNALLRQMEATPGS 616

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 617 GTCNHGRPTYIELKLADIERLFGR 640


>gi|294675823|ref|YP_003576438.1| DNA mismatch repair protein MutL [Rhodobacter capsulatus SB 1003]
 gi|294474643|gb|ADE84031.1| DNA mismatch repair protein MutL [Rhodobacter capsulatus SB 1003]
          Length = 617

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/604 (45%), Positives = 389/604 (64%), Gaps = 14/604 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +   N+IAAGE++ERP+ A+KEL+EN+LDA +SR+E   A GGK+  +I+D+G G
Sbjct: 15  IRQLDDAAANRIAAGEVVERPASAVKELVENALDAGASRIEIAYADGGKTLIRISDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT+E++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR       AQI
Sbjct: 75  MTAEDLPLALCRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRAEGFE-AAQI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG +I +V+P A+N GT+VE+RDLFF  PARL FL++++ E   I D ++R+A+A P 
Sbjct: 134 TVSGGRIGAVKPAALNRGTVVELRDLFFATPARLKFLRTDRTEAQAIADTVKRLAMAEPY 193

Query: 182 VSFTFSTIKSNRYKMNFQST------NGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           VSFT   I  +  +  F++        G    R+ +++G  F +NAV L+     I L G
Sbjct: 194 VSFTLREIAGSETREIFRADAEQGELFGALSGRLGRILGRAFADNAVPLDADREGIRLTG 253

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG A + ++F+NGR V+DK +L  +R AY + +   R+P  VL L  DP  V
Sbjct: 254 YAALPTYSRGAAVEQFLFVNGRPVRDKMLLGALRAAYIDVLSRDRHPAAVLFLTCDPESV 313

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR   + R  I+  I+ A+ + G  +SS ++   + +   + A +  +
Sbjct: 314 DVNVHPAKAEVRFREAGVPRGLIVTGIRHALAQSGHRSSSTVATATLGAMQPEPA-QPRI 372

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIAC 410
            +     +      F  +  L + D  P         +  VE +     E  H  LG A 
Sbjct: 373 YQMERPSSGAIRNAFAAQMPLQSFDEAPQPFTAPFAPSARVEPAPPGTAELIHRPLGAAR 432

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           AQ+H+NYII+QT  G+VIVDQHAAHERL++E+++       I +Q LL PEI++L   E 
Sbjct: 433 AQLHENYIIAQTERGMVIVDQHAAHERLVYERLKAQSAEKGIAAQALLIPEIVELSAAEA 492

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A +++  E+LHRLG+  E FG +AIA+RE PAIL + N   LLRDI+DE+ D   +  LQ
Sbjct: 493 ARLLDVAEELHRLGLAIEPFGGSAIAVRETPAILGEINAAALLRDILDELADQGDSLRLQ 552

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            +I+ +L+ M+C+GSIRSGR+M+  EMN LLREME  P S QCNHGRPT+++LKLSDIE+
Sbjct: 553 SKIDAVLSRMSCHGSIRSGRQMRVEEMNALLREMEATPLSGQCNHGRPTYVELKLSDIER 612

Query: 591 LFGR 594
           LFGR
Sbjct: 613 LFGR 616


>gi|126727787|ref|ZP_01743617.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2150]
 gi|126702914|gb|EBA02017.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2150]
          Length = 617

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/603 (41%), Positives = 391/603 (64%), Gaps = 10/603 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E  +N+IAAGE++ERP+ A+KEL+EN++DA ++R++   A GGK+  ++ D+G 
Sbjct: 14  QIRQLDEAAVNRIAAGEVVERPASAVKELVENAIDAGATRIDVSYAAGGKNLIRVVDDGH 73

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+T++E+P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  L+L+SR   +++  +
Sbjct: 74  GITADELPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLSLVSRAIGSDSAFE 133

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+++G   S V+P A+  GTIV + DLF+  PARL F+++++ E   I+DVI+R+A+A P
Sbjct: 134 ISVNGSIQSPVKPAALTKGTIVTLADLFYATPARLKFMRTDRSEAQAISDVIKRLAMAEP 193

Query: 181 KVSFT---FSTIKSNRYKMNFQSTNGN----FPERISQVIGEDFINNAVELNEKSNEITL 233
            V FT    S     R  +   +  G+       R+ +++G DF  NA+ +  +    TL
Sbjct: 194 HVGFTLRDVSEGGQGRVVLRLDAEQGDFFDALHSRLKRLLGADFAANALRIEAEREGHTL 253

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY  +PT++RG +   ++F+NGR V+D+ ++  +R AYA+ +   R+P VVL +  DP 
Sbjct: 254 TGYAALPTYSRGTSVAQFLFVNGRPVKDRLLIGALRGAYADFLSRDRHPAVVLNISCDPA 313

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK- 352
           +VDVNVHPAKS +RFR+P + R  I+  ++ A+   G   S+ ++   + +F Q+     
Sbjct: 314 RVDVNVHPAKSEVRFRDPGLARGLIVSGLKHALAGAGHRASTTVADATLGAFTQEPVQGR 373

Query: 353 -THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
              + + ++S       +   ++     +  P  + T +         E     LG A A
Sbjct: 374 VYQMDRPSSSAIGRSFAMQSLDSSFGFAEANPDFNATSARVEMAEAAPELLDRPLGAARA 433

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q+H+NYI++QT DG+++VDQHAAHERL++EK++       + +Q LL PEII+L  G+  
Sbjct: 434 QVHENYIVAQTRDGMILVDQHAAHERLVYEKLKNQMAENGVAAQALLIPEIIELSVGDRD 493

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
           LI+E   DL  LG++ E FG  AIAIR  PA+L + N   ++ D++DE+ D   + +L++
Sbjct: 494 LILEMAGDLAALGLEMEPFGGTAIAIRATPAVLGEVNAAAMIHDVLDELSDQGESRSLRE 553

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           RIE +L+ +AC+GSIRSGR+MQ+ EMN LLREME  P+S QCNHGRPT+++LKL+DIE+L
Sbjct: 554 RIEAVLSRIACHGSIRSGRRMQADEMNALLREMEATPHSGQCNHGRPTYVELKLADIERL 613

Query: 592 FGR 594
           FGR
Sbjct: 614 FGR 616


>gi|300024107|ref|YP_003756718.1| DNA mismatch repair protein MutL [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525928|gb|ADJ24397.1| DNA mismatch repair protein MutL [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 593

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/600 (39%), Positives = 376/600 (62%), Gaps = 14/600 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LS + +N+IAAGE+IERP+  +KEL+EN++D+ ++ +E V+  GG S  ++TD+G
Sbjct: 1   MAIRQLSPETVNRIAAGEVIERPASVVKELVENAIDSGATHIEIVVTDGGLSLIRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI-SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM ++++ +AV+RH TSK+  +D  +I + GFRGEALPSIG+++ L + SR   +  G 
Sbjct: 61  SGMNADDLALAVERHATSKLDEEDLFDIRSLGFRGEALPSIGSIAELEIRSRRRDSEQGF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +      S++P A N GTIVEVRDLF   PARL FLKSE+ ET  +TDV+RR+A+A+
Sbjct: 121 SIRVMRGAKESIKPAAANSGTIVEVRDLFSATPARLKFLKSERAETMAVTDVVRRLAMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNE----KSNEITLQ 234
           P++ FT  T +           + + + ER+  ++G +F+ +A+E++         + + 
Sbjct: 181 PEIGFTLQTGEKRPVVYPRGERSSSAWLERLGAIMGHEFMADALEISGGGSGALGPMRVF 240

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+ G+PT +R ++ Q ++F+NGR+V+DK ++  IR AY + IP GR P++ + L++ P  
Sbjct: 241 GFIGLPTLHRADSMQQFLFVNGRSVKDKLLIGAIRAAYGDLIPRGRSPLLAIFLDVAPPD 300

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAK+ +RFR+   +R+ +I ++++A+   G   S+      I +F         
Sbjct: 301 VDVNVHPAKAEVRFRDAGRVRSLMIGAMRQALEAAGHRASAQGGVLTIETF------SAG 354

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           +   A      Q   F +   ++  ++        + + +  E++      LG   AQ+H
Sbjct: 355 VLPSAPPALPPQTAAFAEPAPVAFAEIDTPSADMRAPEPERHEQT--IDKPLGAVRAQVH 412

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYI++QT DGLVIVDQHAAHERL++EK +    +  + +Q LL P I+ L   +  L+ 
Sbjct: 413 ENYIVAQTRDGLVIVDQHAAHERLVYEKFKVALTNGGVATQGLLIPAIVTLDPDDAELLC 472

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              ++L  LG+  E FG  A+A+RE PA+L   +I  L++D+  E+    T   L+DR+E
Sbjct: 473 TRADELAELGLVLESFGEGAVAVRETPALLGDTDIDGLVKDLAAELRADGTARALKDRLE 532

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + + MAC+GS+RSGR++   EMN LLR+ME  P S QCNHGRPT++ LKLSDIE+LFGR
Sbjct: 533 AVASRMACHGSVRSGRRLTVEEMNALLRQMEATPYSGQCNHGRPTYVALKLSDIERLFGR 592


>gi|222147678|ref|YP_002548635.1| DNA mismatch repair protein [Agrobacterium vitis S4]
 gi|254766154|sp|B9JSD6|MUTL_AGRVS RecName: Full=DNA mismatch repair protein mutL
 gi|221734666|gb|ACM35629.1| DNA mismatch repair protein MutL [Agrobacterium vitis S4]
          Length = 617

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 295/618 (47%), Positives = 410/618 (66%), Gaps = 26/618 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERP+ A KELIEN++DA +SR+E   AGGGK+  +ITDNG
Sbjct: 1   MSIKQLSETLINQIAAGEVIERPASAAKELIENAIDAGASRIEIATAGGGKALLRITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM  +++ +AV+RHCTSK+++   +I + GFRGEALPSIG+V+ LT+ SR   + +  Q
Sbjct: 61  CGMDGQDLALAVRRHCTSKLNESLMDIKSLGFRGEALPSIGSVARLTIASRRADSASAFQ 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA+ G K+  VRP   NPGT+VEVRDLFF  PARL FLK+E+ E   IT++++RMAIA+P
Sbjct: 121 IAVEGGKVGEVRPAPGNPGTVVEVRDLFFATPARLKFLKTERAEAAAITEMVKRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           K+ F  S   S+R  +   +T  +   RI+QV+G DF +NA+ L+ +  ++ L G+ G+P
Sbjct: 181 KIRFVLS--GSDRSTLELPATGDDHLARIAQVLGPDFRDNAIALDAEREDVHLGGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+   Y F+NGR VQDK ILS IR AYAET+P GRYPV VL L +DP  VDVNVH
Sbjct: 239 TFNRGNSAHQYAFVNGRPVQDKLILSAIRGAYAETVPHGRYPVAVLALTVDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFR+P ++R  I+ +I++++ ++G  +S+  +  M+ +F             A 
Sbjct: 299 PAKSDVRFRDPGLVRGLIVGAIRQSLTREGDRSSTAGAGAMLRAFRPGANGGFSEGAQAA 358

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-------------------PVEESEA 401
           +  +       +  + S   +  S      +  +                    + E  A
Sbjct: 359 ANNSYAPAYGARPPQPSAWSVDTSPHRPLDDGQNRFDGLALPAARADAHVSPSQISEPVA 418

Query: 402 THYQLGIA-----CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
              + G        AQ+H NYI++QT DGLVIVDQHAAHERL+FE MR+  +  ++ SQ 
Sbjct: 419 MAMESGRFRLGAARAQVHANYIVAQTQDGLVIVDQHAAHERLVFEDMRKALSGRRLPSQG 478

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PEII L E +C  +M+H E+L RLG+  ERFGP AIA+RE PA+L + ++P L+R +
Sbjct: 479 LLIPEIIGLPEEDCDRLMDHAENLDRLGLAIERFGPGAIAVRETPAMLGEVDVPGLVRQL 538

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
            DEI +  T  +L  R+E++ ATMAC+GS+RSGR ++  EMN LLR+ME+ P S QCNHG
Sbjct: 539 ADEIAEWETAGSLFARLEHVAATMACHGSVRSGRLLRVEEMNALLRKMEETPGSGQCNHG 598

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+I+LKLSDIE+LFGR
Sbjct: 599 RPTYIELKLSDIERLFGR 616


>gi|146342898|ref|YP_001207946.1| DNA mismatch repair protein [Bradyrhizobium sp. ORS278]
 gi|166232077|sp|A4Z0Q5|MUTL_BRASO RecName: Full=DNA mismatch repair protein mutL
 gi|146195704|emb|CAL79731.1| DNA mismatch repair protein MutL [Bradyrhizobium sp. ORS278]
          Length = 613

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 234/612 (38%), Positives = 366/612 (59%), Gaps = 18/612 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E++IN+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    ITD+G
Sbjct: 1   MPVRQLPEQVINRIAAGEVVERPASVVKELVENAIDAGASRIDIFTDGGGRRKIAITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT+ ++ +AV+RH TSK+ D D   I T GFRGEALPSIG+V+ L++ +R        
Sbjct: 61  GGMTAADLALAVERHATSKLDDEDLLQIRTLGFRGEALPSIGSVARLSITTRHKSEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +     S + P A+N GT VEV DLF   PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 GITVDCGDKSQIVPAALNQGTRVEVADLFHATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF ++A+ +  + + + ++G+  
Sbjct: 181 PDIAFTVAGEERAPVTWAAALPGAPGQLTRLGDILGTDFRSHAIAVRSERDHVAVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R NA   Y+F+NGR V+DK IL  +R AYA+ +P  R+PVV L + +DPR+VD N
Sbjct: 241 APALTRANALGQYLFVNGRPVRDKLILGAVRAAYADYLPRDRHPVVALFVTLDPREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP-- 356
           VHPAK+ +RFRN  ++R  II ++++ + ++G  T++      I++F     P       
Sbjct: 301 VHPAKTEVRFRNAGLVRALIIHALKEGLAREGRRTAANDGGATIAAFRPAFTPPRPSAGP 360

Query: 357 ------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS--------EDNDPVEESEAT 402
                 +  ++     + +      +S+          +           ++     +  
Sbjct: 361 MNWDWQRSPSAPIPRHDDVDSMPPAVSSAAFAEPMQAAFDVGGPRADLRLHEQPAAPDML 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
              LG A  QIH  YI+SQT DGLVIVDQHAAHER+++E+++    +  +  Q LL P+I
Sbjct: 421 DRPLGAARTQIHDTYIVSQTRDGLVIVDQHAAHERIVYERLKTSLAAHGVQRQILLIPDI 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++L E     ++   ++L   G+  E FGP A+A+RE P++L K N   LLRD+ + + +
Sbjct: 481 VELDEATVEALLARTDELAAFGLAVESFGPGAVAVRETPSLLGKINAAGLLRDLAEHMEE 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                 L+ R+ ++ ATMAC+GS+R+GR+++  EMN LLR ME+ PNS QCNHGRPT+++
Sbjct: 541 WGEALPLERRLMHVAATMACHGSVRAGRRLKPEEMNALLRVMEETPNSGQCNHGRPTYVE 600

Query: 583 LKLSDIEKLFGR 594
           LKL+D+EKLFGR
Sbjct: 601 LKLADVEKLFGR 612


>gi|254462767|ref|ZP_05076183.1| DNA mismatch repair protein MutL [Rhodobacterales bacterium
           HTCC2083]
 gi|206679356|gb|EDZ43843.1| DNA mismatch repair protein MutL [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 609

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 257/600 (42%), Positives = 390/600 (65%), Gaps = 14/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + R+E   A GGK+  ++ D+G G
Sbjct: 15  IRQLDDAAINRIAAGEVVERPASAVKELVENAIDAGAHRIEVAYADGGKTLIRVVDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  + +P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT++SR   ++   +I
Sbjct: 75  IIPQALPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTIISRAVGHD-AFEI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A++G  +S+V+P A++ GT+VE+RDLFF  PARL F+++++ E+  ITDV++R+A+A P 
Sbjct: 134 AVNGGAMSAVKPAALSKGTVVELRDLFFATPARLKFMRTDRAESQAITDVVKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    +     R      + +G+  +    R++ +IG +F +N++ +  +   + L 
Sbjct: 194 VGFTLRDVTGGGEGRVTFRADAESGDLFDALYGRLAGIIGREFADNSLRIEAEREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+  +PT++RG+A   Y+F+NGR V+DK +   +R AY + +   R+P   L L+ DP+ 
Sbjct: 254 GFAALPTYSRGSAVTQYLFVNGRPVRDKLLYGALRGAYFDFLSRDRHPAAALFLDCDPQL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ +++ A+ + G   S+ ++   + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGLARGLIVSALRHALAEAGHRASTTVADATLGAMRPEQTGPAR 373

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           + +      +   +  L+ +              +S     VEE  A  + LG A  Q+H
Sbjct: 374 VYQM-----DRPSQGALRASYQVQAPGFGETAGVFSRVEPLVEEPPAEQFPLGAARGQVH 428

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYII+QT DG+VIVDQHAAHERL++EK++       + +Q LL PEI++L + +CA +M
Sbjct: 429 ENYIIAQTADGMVIVDQHAAHERLVYEKLKDQMAENGVAAQALLIPEIVELSDNDCARLM 488

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E   DL RLG+  ERFG  AIA+RE PAIL + N   +L DI+DE+ D   +  LQ +IE
Sbjct: 489 EIATDLERLGLGIERFGGGAIAVRETPAILGEVNAKAMLLDILDELTDQGESIALQAKIE 548

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIRSGR+M+  EMN LLREME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 549 AILSRVACHGSIRSGRRMRGEEMNALLREMEATPHSGQCNHGRPTYVELKLADIERLFGR 608


>gi|283856238|ref|YP_162089.2| DNA mismatch repair protein [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775233|gb|AAV88978.2| DNA mismatch repair protein MutL [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 613

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 216/615 (35%), Positives = 363/615 (59%), Gaps = 24/615 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +IN+IAAGE++ERP+ A+KEL+EN++DA+S+R+   +  GG    ++ DNG
Sbjct: 1   MSIRRLPEDVINRIAAGEVVERPASALKELVENAIDAQSTRILIRLLKGGLDGIEVIDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++E+ +A++RH TSK+ D+     + T GFRGEALPSI +V+ LTL SR   +++G
Sbjct: 61  IGIPADEMRLALERHATSKLPDNDAIEAVTTLGFRGEALPSIASVARLTLESRTADSDSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I +            +  GT ++V  LF  IPAR  F++S + E     DV+RR+A+ 
Sbjct: 121 WKIIVDNGHFEKEGIAPLPKGTRIKVDSLFARIPARRKFMRSAKSEYMACHDVVRRLAMT 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P ++F+        + +N      +   R++ +I     +N+V +  + +++ L+G   
Sbjct: 181 RPDIAFSLEHDGRRIFSLN---GGESRQRRVAALIDRTLKDNSVAVEYQRDQMQLEGVAS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+RG A+  Y+F+NGR V+D+ ++ ++R AY + +   R+PV+ L L +    VD+N
Sbjct: 238 LPTFHRGLADHQYLFVNGRPVKDRLLIGSVRAAYHDLLAKDRHPVLALFLTLPNSDVDIN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN---APKTHL 355
           VHPAK  +RFR+   +R+ I+ +++++++  G  ++     + +  + + +   AP   +
Sbjct: 298 VHPAKGEVRFRDSQAVRSLIVGALRESLDLSGFRSAQPADVQAMGKWQKSSELAAPSKAV 357

Query: 356 PKYATSLTNTQEKLFLQENRLST----------------NDLLPSDDPTYSEDNDPVEES 399
           P + +  + +   L  +   +                                N   + S
Sbjct: 358 PSHESRQSLSDSGLLFKSRTIEAPKATSIPTPQGTASDLWSAATKSPLPPMGRNSATDSS 417

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           E + + LG+A  QI   YII+++ DGLVIVDQHAAHERL+ E+MR+   + ++TSQ LL 
Sbjct: 418 EQSDFPLGLARGQIAATYIIAESKDGLVIVDQHAAHERLVMERMRRALQNGQVTSQRLLM 477

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+++++ E  C L  +  ++   +G++ ERFG  AI +R  PA+L    +  +++D+  E
Sbjct: 478 PDVVEMDEVSCDLFEQRQDEFAAMGLETERFGHEAILVRATPAMLGNCEVKAMIKDLAAE 537

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           I     +  L+++ ++I+ATMAC+GS+R+GR +   EMN LLREME  P+S QCNHGRPT
Sbjct: 538 IAAYDQSLLLKEKFDHIVATMACHGSVRAGRLLSIAEMNALLREMEITPHSGQCNHGRPT 597

Query: 580 FIKLKLSDIEKLFGR 594
           ++KL   DIEKLFGR
Sbjct: 598 WVKLGHKDIEKLFGR 612


>gi|163867560|ref|YP_001608759.1| DNA mismatch repair protein [Bartonella tribocorum CIP 105476]
 gi|189030391|sp|A9IN82|MUTL_BART1 RecName: Full=DNA mismatch repair protein mutL
 gi|161017206|emb|CAK00764.1| DNA mismatch repair protein MutL [Bartonella tribocorum CIP 105476]
          Length = 617

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 268/616 (43%), Positives = 402/616 (65%), Gaps = 22/616 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KEL+EN++DA ++R+E + A GGK+F +++DNG
Sbjct: 1   MIIRHLSENIINQIAAGEVIERPANVVKELVENAIDAGATRIEIITANGGKNFIKVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++++ +AV RHCTSKI+DD  NI   GFRGEALPSIG+V+ L L+SR  +    A+
Sbjct: 61  CGIPADQLTLAVSRHCTSKITDDVHNICFLGFRGEALPSIGSVAKLKLISRTKEAENAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+++  KI   +P A N GTIVEVRDLFF  PARL F+K+++ ETN I+D+I+R+AIA+P
Sbjct: 121 ISVTAGKIVGPKPAAANLGTIVEVRDLFFVTPARLKFMKTDRAETNAISDMIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ S +     +++    N     +RI+Q++G++F  N++ L+ +   + L G+  +
Sbjct: 181 HIRFSLSGLDRTSMELSATENNTQGQLQRITQIMGKEFAPNSIALDAERESVRLTGFACL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DKF+   IR AYA+ +   RYPV +L +++ P +VDVNV
Sbjct: 241 PSFNRNNSLHQFAYVNGRPVRDKFLWGAIRGAYADVMTRDRYPVAILFIDLPPAEVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ----------DN 349
           HPAK+ +RFR+P +IR  I+ +I++A+ + GI  +S  S+ M+++F            + 
Sbjct: 301 HPAKADVRFRDPGLIRGLIVGAIREALQQSGIRPTSTRSEAMLAAFQTQKPLTQQSLGNF 360

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY-----------SEDNDPVEE 398
                   Y+    +      + +   STN     ++ T            +     +  
Sbjct: 361 KNAHQSSSYSPQSHHFATASMVHKPLDSTNSFGLKENATPIMEGLNTPSGDAYIPSTIPS 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
           SE   Y LG A AQIH+NYII+QT D L+IVDQHAAHERL++E ++    +  + SQ LL
Sbjct: 421 SEELSYPLGAARAQIHKNYIIAQTQDSLIIVDQHAAHERLVYEALKNALYAKPLPSQLLL 480

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI++L E +   ++ H + L + G+  E FGP AI +RE P++L K N+  L++D+ D
Sbjct: 481 IPEIVELSEEDATCLLTHKDALQKFGLGIEPFGPGAILVRETPSMLGKINVQALIKDLAD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           E  +  TT  L+  ++ + ATMAC+GSIRSGR ++  EMNRLLR+ME  PN+S CNHGRP
Sbjct: 541 EAAEYDTTNNLKAMLDYVAATMACHGSIRSGRLLRPEEMNRLLRQMEAIPNTSTCNHGRP 600

Query: 579 TFIKLKLSDIEKLFGR 594
           T+I+LKL+DIE+LFGR
Sbjct: 601 TYIELKLADIERLFGR 616


>gi|16124948|ref|NP_419512.1| DNA mismatch repair protein [Caulobacter crescentus CB15]
 gi|221233668|ref|YP_002516104.1| DNA mismatch repair protein [Caulobacter crescentus NA1000]
 gi|239977506|sp|B8H173|MUTL_CAUCN RecName: Full=DNA mismatch repair protein mutL
 gi|239977507|sp|P0CAV5|MUTL_CAUCR RecName: Full=DNA mismatch repair protein mutL
 gi|13421916|gb|AAK22680.1| DNA mismatch repair protein MutL [Caulobacter crescentus CB15]
 gi|220962840|gb|ACL94196.1| DNA mismatch repair protein mutL [Caulobacter crescentus NA1000]
          Length = 637

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 239/636 (37%), Positives = 372/636 (58%), Gaps = 42/636 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L  + +N+IAAGE++ERP+ AIKEL++N++DA ++R+E    GGG +   + D+G
Sbjct: 1   MPIRRLPPETVNRIAAGEVVERPASAIKELVDNAIDAGATRIEVEAHGGGLTRILVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD------FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            G++ EE+P+A++RH TSK++ D         IHT GFRGEALPSIG+V+ L + SR   
Sbjct: 61  CGLSPEELPVAIERHATSKLAPDADGLWDLLRIHTMGFRGEALPSIGSVARLQISSRAKG 120

Query: 115 NNTGAQIAISGEKISSVRPV--AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                 I + G ++  V P       G  +EVRDLF+  PARL F+KSE+ E   IT+ I
Sbjct: 121 AKDAFSILVEGGQVGEVAPAAFPGPHGARIEVRDLFYATPARLKFMKSERAEALAITEEI 180

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +R A+A   V F+         ++            R++ V+G +F  NA+E+++  + +
Sbjct: 181 KRQAMANESVGFSLDIDGRRVLRLPPEHPGPQGRLARLAAVLGREFQENALEIDQTRDGV 240

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L G+ G+PT+NRGNA   Y+F+NGR V+D+ +   +R AYA+ +   R+P   L + ++
Sbjct: 241 RLSGFAGLPTYNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHPTAALYVTLE 300

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
             +VDVNVHPAK+ +RFR+P ++R  I+ +++ A+   G   S+ ++ + + S     +P
Sbjct: 301 TTEVDVNVHPAKAEVRFRDPALVRGLIVGALRHALAGAGHRASTTVAAQALDSIRAQQSP 360

Query: 352 KT-HLPKYATSLTNTQEKLFLQENRLSTNDLLPS-------------------------- 384
              + P+Y    +      + +                                      
Sbjct: 361 FPGYQPQYQPGPSPAGFSAWREGGWTPPTQRPMDLPGLNEVSARVEPSYGGDLAGVVREA 420

Query: 385 ------DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                 +D   ++        +   Y LG A AQ+H+ YI++QT DG+VIVDQHAAHERL
Sbjct: 421 YAAAAFEDRPPTDYPGATAPFDPVDYPLGAARAQVHETYIVAQTRDGMVIVDQHAAHERL 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           ++E+M+ +  S  +T QTLL PE++DL   E   ++   E+L  LG+  E FGP A+ +R
Sbjct: 481 VYERMKGEMASGGVTRQTLLLPEVVDLDPAEAERVVARAEELAGLGLVLESFGPGAVLVR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E PA+L K +   L+RDI D++ ++     L++R+E + +TMAC+GS+R+GR++   EMN
Sbjct: 541 ETPALLGKTDAAALVRDIADDLAENGQALALKERLEEVCSTMACHGSVRAGRRLNGAEMN 600

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LLREME  P+S QCNHGRPT+++LKL+DIEKLFGR
Sbjct: 601 ALLREMEATPHSGQCNHGRPTYVELKLADIEKLFGR 636


>gi|313201103|ref|YP_004039761.1| DNA mismatch repair protein mutl [Methylovorus sp. MP688]
 gi|312440419|gb|ADQ84525.1| DNA mismatch repair protein MutL [Methylovorus sp. MP688]
          Length = 624

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 210/623 (33%), Positives = 334/623 (53%), Gaps = 35/623 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+ A+KEL+ENSLDA SS +   +  GG    ++TD+G G
Sbjct: 4   IKLLPDQLISQIAAGEVVERPASALKELLENSLDAGSSDIAVTLGQGGVKLLRVTDDGNG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKI+  DD  ++ + GFRGEAL SI ++S  ++ SR  + +   +
Sbjct: 64  IPHDDLTLALTRHATSKIASLDDLESVASLGFRGEALASIASISRTSITSRHAEASHAWR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA  G  +    P A++ GTIVEV+D++F  PAR  FLK+EQ E     +  RR+A++ P
Sbjct: 124 IAADGGLLGDAAPAALDRGTIVEVQDIYFNTPARRKFLKTEQTEFGHCEEAFRRIALSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F          ++      G    R ++V+G DF   A EL+E +  + L G    P
Sbjct: 184 DVGFMLQHNGRALMRL----APGEAKRRFTEVLGPDFSAEAFELDESAGGLRLWGMAAKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+R   +  YV++NGR V+DK I   IR AY + +   R+P   L LE+DP  VDVNVH
Sbjct: 240 TFSRSARDTQYVYVNGRFVRDKLISHAIRQAYQDVLHHDRHPAFALFLELDPTLVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKK-----------GISTSSVLSKKMISSFHQDN 349
           P+K+ +RFR    +  FI  ++ KA+               ++  +      I +     
Sbjct: 300 PSKTEVRFREGQAVHRFIFHALHKALATPVGLPANGLVPPPVAAPATSYSSGIPAGQPYP 359

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLS------------TNDLLPSDDPTYSEDNDPVE 397
             +      A       + LF    R +            ++  L +        +    
Sbjct: 360 RQQGSFDLRANEAPGFYQTLFGGLPREAVDTASSFVPSAISSADLQATLSPSQASSSLSP 419

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E  A  Y LG A AQ+H  Y+++Q   GL++VD HAAHER+++E+++   +   +  Q L
Sbjct: 420 EQAAQEYPLGFALAQLHGVYVLAQNAQGLIVVDMHAAHERIMYERLKNALDGDSVPMQPL 479

Query: 458 LTPEIIDLLEGECALIMEH------DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           L P   +    E A + E        + LH+LG +  +  P+ +A+R IPA+L   +   
Sbjct: 480 LLPVSFNADRFEVATVQEQLSTPEGQQTLHQLGFEIVQLSPSTLAVRAIPAMLQDADAVA 539

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L RD++ ++ +   +  L +R   +LATMAC+ ++R+ R +   EMN LLR+ME    S 
Sbjct: 540 LARDVLRDLREYGGSRVLTERRNELLATMACHAAVRANRILSIQEMNALLRDMEATERSG 599

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+ +  ++D++K+F R
Sbjct: 600 QCNHGRPTWFQATMADLDKMFMR 622


>gi|241664014|ref|YP_002982374.1| DNA mismatch repair protein [Ralstonia pickettii 12D]
 gi|240866041|gb|ACS63702.1| DNA mismatch repair protein MutL [Ralstonia pickettii 12D]
          Length = 635

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 201/631 (31%), Positives = 331/631 (52%), Gaps = 45/631 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 10  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGV 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR   +    
Sbjct: 70  GIPADELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTANDAHAT 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     +    +P +   GT V+V+ L+F  PAR  FLK+EQ E     +VIRR A+A 
Sbjct: 130 QI---IAQTGRAQPASGGVGTTVDVQHLYFNTPARRKFLKTEQTELGHCMEVIRRTALAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N    +     R + V+G +F    +   E + E+ L G+ G+
Sbjct: 187 PDVAISVHHNGKPLEHWNATQADS----RSAAVLGTEFARARLPFEESAGELRLFGFAGL 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 243 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS-----FHQDNAPKTH 354
           HP+K  +RFR+   +  F+  ++Q+A+++        L   +  +          +P  +
Sbjct: 303 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIADAHDVAGVTTAPSPADN 362

Query: 355 LPKYATSLTNTQEKLFLQENRLST-----NDLLPSDDPTYSEDNDPVEESEATH------ 403
             ++   +   Q  L + + R         D  P      +   D    +          
Sbjct: 363 TTRWINQMAARQTSLGIAQPRAEYLSMMRGDSTPMPAMRPAWMTDVPSAATLFDGGTATA 422

Query: 404 --------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                               + LG A AQ+H  Y+++Q T G+V+VD HAAHER+++E++
Sbjct: 423 QAAAAVAEPVAAPPADNDDAHPLGFAVAQLHGIYVLAQNTRGMVLVDMHAAHERILYEQL 482

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +    + ++  Q LL P        E     E  + L  LG       P  +A+R +P +
Sbjct: 483 KTALEARRVEVQPLLIPVTFAASPVEIGTAEEFRDTLTLLGFDISAVSPTTLAVRSVPTL 542

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN LLR+
Sbjct: 543 LQKADAQALARDVLRDLHAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMNALLRQ 602

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 603 MEATERADQCNHGRPTWIQLTVADLDRLFLR 633


>gi|254450749|ref|ZP_05064186.1| DNA mismatch repair protein MutL [Octadecabacter antarcticus 238]
 gi|198265155|gb|EDY89425.1| DNA mismatch repair protein MutL [Octadecabacter antarcticus 238]
          Length = 621

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/600 (43%), Positives = 394/600 (65%), Gaps = 16/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+  +KELIEN+LDA +SRVE  +A GGK+  ++TDNG G
Sbjct: 29  IRQLDDAAINRIAAGEVVERPASVVKELIENALDARASRVEVFVADGGKTLIRVTDNGVG 88

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT++++P+A+ RH TSKI   D  NIH+FGFRGEALPS+GAV  LT+ SR      G +I
Sbjct: 89  MTAQDLPLALSRHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTIRSRTNGGE-GCEI 147

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           ++SG   ++VRP A+  GTIVE+RDLF+  PARL FL++++ E   I++V++R+A+A P 
Sbjct: 148 SVSGGAHTAVRPAALTAGTIVELRDLFYATPARLKFLRTDRAEMQAISEVVKRLAMAEPF 207

Query: 182 VSF--TFSTIKSNRYKMNFQSTNGNFPERISQ----VIGEDFINNAVELNEKSNEITLQG 235
           V+F  T  +   +R         G+  + +      V+G+DF  NA+ ++ + + + L G
Sbjct: 208 VTFVLTDVSGGKSRVTFRADGETGDMFDALHARLRGVLGKDFAENALAIDAQRDGVHLTG 267

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +  +PT++RG+A Q ++++NGR V+DK ++  +R AY +T+   R+P   L ++++P +V
Sbjct: 268 FAALPTYSRGSAVQQFLYVNGRPVRDKVLIGALRGAYMDTLSRDRHPAACLFIDVEPTRV 327

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA-PKTH 354
           DVNVHPAKS +RFR+P I+R  I+ +++ A+ + G   SS ++ + + +   +   P+ +
Sbjct: 328 DVNVHPAKSEVRFRDPAIVRGLIVSALRAALAQAGHRASSTVANETLGAMQPEQTEPRVY 387

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                T              R S    +  D     E  +P +   A  + LG A AQ+H
Sbjct: 388 QMDRPTGGIGPAY-------RPSGFADMAQDMSGRVEMIEPNDGPRAEEHPLGAARAQVH 440

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYII+QT  G+VIVD HAAHERL++EK++       + +Q LL PEII++ + + A ++
Sbjct: 441 ENYIIAQTETGIVIVDGHAAHERLVYEKLKTQMAENGVAAQALLIPEIIEMSDDDAAQLL 500

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              ++L R G+  E FG  AIA+RE PAIL + N   +LRDI+DE+ D  ++  +Q+++E
Sbjct: 501 AVADELSRFGLTIEPFGGRAIAVRETPAILGEVNAEAMLRDILDELSDQGSSTLVQEKLE 560

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIR+GR M+  EMN LLREME+ P S QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 561 AILSRIACHGSIRTGRSMRGEEMNALLREMERTPRSGQCNHGRPTYVELKLSDIERLFGR 620


>gi|149915456|ref|ZP_01903983.1| DNA mismatch repair protein [Roseobacter sp. AzwK-3b]
 gi|149810745|gb|EDM70586.1| DNA mismatch repair protein [Roseobacter sp. AzwK-3b]
          Length = 611

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/606 (41%), Positives = 385/606 (63%), Gaps = 17/606 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN+LDA + R++   A GGK+  ++TD+G G
Sbjct: 8   IRQLDDAAINRIAAGEVVERPASAVKELVENALDAGARRIDVAYADGGKTLIRVTDDGCG 67

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  + + +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR   +   A+I
Sbjct: 68  IAPDSLALALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLTITSRARGHE-AAEI 126

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           A+SG ++  V+P A+N GTIV +RDLF   PARL F++S++ E   I D++RR+A+A P 
Sbjct: 127 AVSGGQMGKVKPAALNGGTIVTLRDLFHATPARLKFMRSDRAEAQAIGDIVRRLAMAEPF 186

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPERIS----QVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R      +  G+  + +     +++G DF +NA+ ++   + + + 
Sbjct: 187 VGFTLRDVSGGGEGRMVFRADAETGDMFDALHGRLGRILGSDFADNALRIDATRDGLRMT 246

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG+A   Y+F+NGR V+D+ ++  +R AY + +   R+P   L +E DP  
Sbjct: 247 GYAALPTYSRGSAVAQYLFVNGRPVRDRMMIGALRAAYMDVLSRDRHPAAALFVECDPML 306

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+  ++ A+ + G   SS ++   + +   +  P   
Sbjct: 307 VDVNVHPAKSEVRFRDPGLARGLIVSGLRHALAEAGHRASSTVAGATLGAMRPE--PAGP 364

Query: 355 LPKYATSLTNTQEKLFLQENRLS-TNDLLPSDDPTYSEDNDPVEESEATHYQL-----GI 408
              Y     + Q ++   + +     ++  +        +DP +E+            G 
Sbjct: 365 ARVYQMDRPSAQARVAAYQAQAPGFAEMAGAFSARVEPLSDPADETATDDVPPEALPLGA 424

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H+NYI++QTTDG+VIVD HAAHER+++EK+++    T + SQ LL PEI+++   
Sbjct: 425 ARAQLHENYILAQTTDGIVIVDAHAAHERIVYEKLKRQMAETGVASQALLIPEIVEMSAE 484

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           + A ++E  EDL RLG+  E FG  A+A+RE PAIL   +   +L DI+DE+ D   + +
Sbjct: 485 DAASLLELAEDLARLGLVIEPFGGGAVAVRETPAILGACDARAMLLDILDELADQGDSGS 544

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           +Q RIE IL+ +AC+GS+RSGR++++ EMN LLREME  P+S QCNHGRPT++ LKL+DI
Sbjct: 545 VQARIEAILSRVACHGSVRSGRRLRAEEMNALLREMEATPHSGQCNHGRPTYVDLKLADI 604

Query: 589 EKLFGR 594
           E+LFGR
Sbjct: 605 ERLFGR 610


>gi|254502767|ref|ZP_05114918.1| DNA mismatch repair protein MutL [Labrenzia alexandrii DFL-11]
 gi|222438838|gb|EEE45517.1| DNA mismatch repair protein MutL [Labrenzia alexandrii DFL-11]
          Length = 631

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 262/631 (41%), Positives = 396/631 (62%), Gaps = 38/631 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M++R+L E++INQIAAGE+IERP+  IKEL+EN++DA +S+++ V A GGK+  ++ D+G
Sbjct: 1   MQVRQLGEQVINQIAAGEVIERPASVIKELVENAVDAGASQIDIVTAAGGKTLMRVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM  +++ +A++RHCTSKISDD   +I T GFRGEALPSIG+V+ L + +R  + +   
Sbjct: 61  AGMRQDDLKLAIRRHCTSKISDDDLFDIRTLGFRGEALPSIGSVARLVIQTRHGEEDHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            IA+ G K   + P A + GT VEVRDLFF  PARL FLKS++ E   IT++++R+A+AY
Sbjct: 121 AIAVEGGKEQPIVPAARSKGTQVEVRDLFFATPARLKFLKSDRAEAAAITEIVKRIALAY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F+ S              +     RI+Q++G DF++NA+E++     + L GY G+
Sbjct: 181 PHIGFSLSGADRQPQSWPAARGDEPHLARIAQILGPDFVDNAMEIDAAREGVRLTGYAGL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RGNA   + F+NGR V+DK +LS +R AYA+ +   R+PVVVL +++DP  VDVNV
Sbjct: 241 PTHHRGNAQHQFFFVNGRPVKDKLLLSGLRGAYADVLARDRHPVVVLFIDLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFR+  ++R  ++ +I+ A+ + G  +S+  +   + +  +  +P+   P  A
Sbjct: 301 HPAKSDVRFRDAQLVRGLLVGAIKHALVQAGHRSSTSNAAVALDALRKQ-SPQPGWPSGA 359

Query: 360 TSL--------------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-- 397
           T+                              Q    + N +    +   SE  +     
Sbjct: 360 TAPAYGSAASVSASAHGFGATATAERWAPEAFQPLETAPNPVPGFAEDRVSEVQNGFSAL 419

Query: 398 --------------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                          SE T   LG A AQ+H+ YII+QT DG+VIVDQHAAHERL++E++
Sbjct: 420 ATPSADARAHDVPLASEKTELPLGAARAQVHETYIIAQTEDGVVIVDQHAAHERLVYERL 479

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           ++      +  Q LL PE++DL E + A + +  EDL ++G+  E FGP AIA+RE PAI
Sbjct: 480 KEALAKKDVARQILLIPEVVDLPEEDAARLADRAEDLEKVGLSLEAFGPGAIAVRETPAI 539

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L   +I  ++R + DE+ +  T  +L+++++++ ATMAC+GS+R+GR+M+  EM+ LLR+
Sbjct: 540 LGDMDIQGMVRTLADELAEWETADSLREKLDHVAATMACHGSVRAGRRMRPEEMDALLRD 599

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME  P S QCNHGRPT+++LKLSDIEKLFGR
Sbjct: 600 MEATPLSGQCNHGRPTWVELKLSDIEKLFGR 630


>gi|73542454|ref|YP_296974.1| DNA mismatch repair protein [Ralstonia eutropha JMP134]
 gi|72119867|gb|AAZ62130.1| DNA mismatch repair protein MutL [Ralstonia eutropha JMP134]
          Length = 652

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 207/646 (32%), Positives = 335/646 (51%), Gaps = 62/646 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +S++   +  GG     ITDNG 
Sbjct: 14  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGTSQLGIRLEEGGVRRIVITDNGC 73

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+P+A+ RH TSKI+  D+   + T GFRGEAL SI +VS L+L SR   +    
Sbjct: 74  GIPPAELPVALMRHATSKIASLDELEAVLTLGFRGEALASIASVSQLSLTSRTASDAHAT 133

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q++     +   +P +   GT V+V+ L+F  PAR  FLKSEQ E     +++RR+A+A 
Sbjct: 134 QVSADTGAM---QPASGGVGTTVDVQHLYFNTPARRKFLKSEQTELGHCLEMVRRVALAR 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N     G+   R +QV+G DF    + L+E++ ++ L G+ G+
Sbjct: 191 PDVAISVHHNGKPLEHWNA----GDVATRTAQVLGSDFARARLPLDEEAGDLHLYGFAGL 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG  +Q Y F+NGR V+DK +   +R+AY + +   R+P  VL L++ P  VDVNV
Sbjct: 247 PTASRGRPDQQYFFVNGRFVRDKLLNHAVRSAYQDVLHGDRFPSYVLCLDLPPEMVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP+K  +RFR    +  F+  ++Q+ + ++       L                      
Sbjct: 307 HPSKIEVRFRESRSVHQFVYHAVQRCLARQAGENGDSLHTGTDVEDVPAAGGAGELREPR 366

Query: 339 ------------------------------KKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
                                         +  +    +   P+ ++P           +
Sbjct: 367 APYGGTASSGSQWINYSAARQTELGIAQPRQAYLGMVREATMPRPYVPSSQPPAWLADAQ 426

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
               +   S  D +           D  E +E   + LG A AQ+H  Y+++Q   GLV+
Sbjct: 427 AARADEPPSLLDGVAPARMALPIAEDATEGAE--DHPLGYAIAQLHGIYVLAQNARGLVL 484

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           VD HAAHER+++E+++   ++  +  Q LL P  +     E     EH E L  LG    
Sbjct: 485 VDMHAAHERILYEQIKDALDARDLAVQPLLLPVTLPANPVEIGTAEEHRETLELLGFDIA 544

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
              P  +A+R +PA+L + +   L RD++ ++     +  L +R   +LAT+AC+ ++R+
Sbjct: 545 PVSPTTLAVRAVPALLQQADAEALARDVLRDLHSYGGSRVLAERRNELLATLACHSAVRA 604

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            RK+   EMN LLR+ME+   + QCNHGRPT+++L +S++++LF R
Sbjct: 605 NRKLTLEEMNALLRQMEQTERADQCNHGRPTWVQLSVSELDRLFLR 650


>gi|150395653|ref|YP_001326120.1| DNA mismatch repair protein [Sinorhizobium medicae WSM419]
 gi|166232108|sp|A6U6K5|MUTL_SINMW RecName: Full=DNA mismatch repair protein mutL
 gi|150027168|gb|ABR59285.1| DNA mismatch repair protein MutL [Sinorhizobium medicae WSM419]
          Length = 605

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 290/606 (47%), Positives = 408/606 (67%), Gaps = 14/606 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  ++TDNG
Sbjct: 1   MAIKQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM+  ++ +A++RHCTSK+    ++I T GFRGEALPSIG+V+ L++ +R  +   GA 
Sbjct: 61  LGMSPADLELAIRRHCTSKLDGSLADIRTLGFRGEALPSIGSVARLSITTRTAEAREGAT 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G +   VRP A   GT+VEVR+LFF  PARL F+KSE+ ET  I++V+RRMAIA+P
Sbjct: 121 ITITGGRSDPVRPSAAVVGTVVEVRELFFATPARLKFMKSERAETAAISEVVRRMAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           KV F  S   S+R  + F +T  +   R++QV+G DF +NA+E++ +     L G+ G+P
Sbjct: 181 KVRFVLS--GSDRSALEFPATGDDRLARMAQVLGRDFRDNAIEIDAEREGARLTGFAGVP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGN+ Q Y F+NGR VQDK I+S IR AYAET+P GRYPV VL L IDP  VDVNVH
Sbjct: 239 TFNRGNSLQQYAFVNGRPVQDKLIMSAIRAAYAETVPQGRYPVAVLSLTIDPALVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA---------- 350
           PAKS +RFR+P +IR  II +I++A+ ++G   ++  ++ ++ +F  +            
Sbjct: 299 PAKSDVRFRDPGLIRGLIIGAIREALMREGDRAATTGAQGLMRAFRPEFHRGDQQRPQEP 358

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGI 408
                  Y         + F +  + + +D         +   D ++  + +A  + LG 
Sbjct: 359 WTAATSPYRPFSPGGAARGFAETPQAAFSDFAQPSARNAAVPVDSIQAADGQAASFPLGA 418

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H+NYI++QT DGLVIVDQHAAHERL+FE MR   ++  + +Q LL PEI+DL E 
Sbjct: 419 ARAQLHENYIVAQTDDGLVIVDQHAAHERLVFETMRTALHARPVPAQALLIPEIVDLPEE 478

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           +C  ++ H  +  RLG+  ERFGP AIA+RE PA+L + +   L+R + DE+ +  T   
Sbjct: 479 DCDRLVAHAGEFTRLGLAIERFGPAAIAVRETPAMLGEMDAAGLVRQLADELAEWDTADG 538

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           L  R+E + ATMAC+GS+RSGR++++ EMN LLR ME  P S QCNHGRPT+I+LKL+DI
Sbjct: 539 LAGRLEYLAATMACHGSVRSGRRLRTEEMNALLRRMEATPGSGQCNHGRPTYIELKLADI 598

Query: 589 EKLFGR 594
           E+LFGR
Sbjct: 599 ERLFGR 604


>gi|315122189|ref|YP_004062678.1| DNA mismatch repair protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495591|gb|ADR52190.1| DNA mismatch repair protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 600

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 470/597 (78%), Positives = 526/597 (88%), Gaps = 4/597 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIRKLSEKI+NQIAAGEIIERP+IAIKELIENSLDAES+ +ETVI+GGGKSFFQITDNG
Sbjct: 5   MKIRKLSEKIVNQIAAGEIIERPAIAIKELIENSLDAESTCIETVISGGGKSFFQITDNG 64

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           FGMTSEEI MAVQRHCTSKI D+FSNI TFGFRGEALPSIGAV+HLTLMSR PQNNTGAQ
Sbjct: 65  FGMTSEEIQMAVQRHCTSKIFDNFSNICTFGFRGEALPSIGAVAHLTLMSRSPQNNTGAQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQ+ETNLI +VIRRMAIAYP
Sbjct: 125 ITISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQIETNLIANVIRRMAIAYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V FTFST K+NRY M+F+ST+GNFP+RISQVIGEDFINNAVE+NE S  ITL+GY GIP
Sbjct: 185 AVRFTFSTTKNNRYTMDFKSTDGNFPDRISQVIGEDFINNAVEINETSPNITLRGYAGIP 244

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNRGNANQ YVF+NGR +QDK ILSTIR AY+ETIPL RYPV+VLLLEI+P QVDVNVH
Sbjct: 245 TFNRGNANQLYVFVNGRIIQDKLILSTIRIAYSETIPLRRYPVIVLLLEINPTQVDVNVH 304

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA- 359
           PAKS +RFR+P+++RNFIIQSIQK+INKK   TSS+LS KMISSFHQ+NA K     Y  
Sbjct: 305 PAKSDVRFRDPSMVRNFIIQSIQKSINKKRNFTSSILSNKMISSFHQENAEKFRPITYEH 364

Query: 360 -TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
               +++QEKL LQEN LST +LL +++  + +DN  + ++  ++Y LG+ACAQIHQNYI
Sbjct: 365 KAIPSHSQEKLVLQENNLSTKELLTTNNKYFMDDNS-INDTTTSNYPLGMACAQIHQNYI 423

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFN-STKITSQTLLTPEIIDLLEGECALIMEHD 477
           ISQT D L+IVDQHAAHERLIFEKMRQDFN + KITSQTLL PEIIDLLEGECALI+EHD
Sbjct: 424 ISQTYDELIIVDQHAAHERLIFEKMRQDFNINDKITSQTLLIPEIIDLLEGECALILEHD 483

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           EDL RLG+  ERFG NAIAIREIPAILSK N+ QLLRDI+DEII+++T   L D+I+ IL
Sbjct: 484 EDLRRLGVTVERFGLNAIAIREIPAILSKNNVSQLLRDIVDEIIENNTKNNLTDKIDKIL 543

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ATMACYGSIRSGRKM   EMNRLLREME+N NSSQCNHGRPTFIKLKLSDIEKLFGR
Sbjct: 544 ATMACYGSIRSGRKMHLTEMNRLLREMEQNNNSSQCNHGRPTFIKLKLSDIEKLFGR 600


>gi|163734247|ref|ZP_02141687.1| DNA mismatch repair protein [Roseobacter litoralis Och 149]
 gi|161392255|gb|EDQ16584.1| DNA mismatch repair protein [Roseobacter litoralis Och 149]
          Length = 610

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/600 (41%), Positives = 377/600 (62%), Gaps = 13/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  +N+IAAGE++ERP+ AIKEL+EN+LDA + ++      GGK+  ++ D+G G
Sbjct: 15  IRQLDEGAVNRIAAGEVVERPASAIKELVENALDAGARKIAIDYGDGGKTLIRVQDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT+ ++P+A+ RH TSKI   D  NI TFGFRGEALPS+ AV  LT+++R   ++ G + 
Sbjct: 75  MTANDLPLALSRHATSKIDGSDLLNIQTFGFRGEALPSLAAVGRLTIVTRADGDD-GVEA 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G     ++P A NPGT V +RDLF+  PARL FL+S++ E   I+DV++R+A+A P 
Sbjct: 134 TVAGGTEKPLKPAACNPGTTVTIRDLFYATPARLKFLRSDRAEAQAISDVVKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQ 234
           V F     S     R      +  G+       R+++V+G +F  N++ ++ +   + L 
Sbjct: 194 VQFVLRDVSGDGPGREVFRADAQQGDLFGALHGRLARVLGREFAENSLAIDAEREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+  +PT++RG+A   Y+F+NGR V+DK ++  +R AY++ +   R+P   L L+ DP+ 
Sbjct: 254 GFAALPTYSRGSAVAQYLFVNGRPVKDKLLVGALRGAYSDFLSRDRHPAAALFLDCDPKL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P I R  I+ +++ A+ + G   S+ +S   + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGIARGLIVSALRHALAEAGHRASTTVSTATLGAMQPEPIGARV 373

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                 S   +   L       +  ++          D D     E   Y LG A  Q+H
Sbjct: 374 YQMDHASRPMSAPPL----QTPAFQEVAAPWGRVAETDPDGETADEPVDYPLGAARGQVH 429

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYII+QT  G+VIVDQHAAHERL++EK+++      + SQ LL PEI++L   +CA +M
Sbjct: 430 ENYIIAQTATGMVIVDQHAAHERLVYEKLKRQMAENGVASQALLIPEIVELSAADCASLM 489

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              +DL +LG+  E FG +AIA+RE PAIL   +   L+ DI+DE+ D +T+  ++ RI+
Sbjct: 490 HVADDLAQLGLVVEPFGGDAIAVRETPAILGLVDARALILDILDELADQNTSDNIRQRID 549

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIRSGR M++ EMN LLR+ME  P+S QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 550 AILSRVACHGSIRSGRWMKTEEMNALLRDMEATPHSGQCNHGRPTYVELKLSDIERLFGR 609


>gi|239833562|ref|ZP_04681890.1| DNA mismatch repair protein MutL [Ochrobactrum intermedium LMG
           3301]
 gi|239821625|gb|EEQ93194.1| DNA mismatch repair protein MutL [Ochrobactrum intermedium LMG
           3301]
          Length = 626

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/625 (44%), Positives = 391/625 (62%), Gaps = 31/625 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V  GGGK+  ++TDNG
Sbjct: 1   MPIRHLSETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTGGGGKTLLRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +E+P+AV RHCTSK+SDD  +I   GFRGEALPSIG+V+ L L SRP   ++G +
Sbjct: 61  SGIPVDELPLAVSRHCTSKLSDDVHDIRALGFRGEALPSIGSVAKLVLKSRPQDADSGFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +++SG  +   RP A+N GTI EVRDLF+  PARL F+K+++ E + ITDVI+R+AIA+P
Sbjct: 121 VSVSGGHLDGPRPSALNRGTIAEVRDLFYATPARLKFMKTDRAEASAITDVIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ +       ++    S      ERI+QV+G++F  NA+ ++ + + + L G+ GI
Sbjct: 181 HIRFSLAGSDRTPLELAATGSGAEATLERINQVLGKEFGENALAIDAERDGVRLAGFVGI 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ NRGNA   + ++NGR V+DK +   +R AYA+ +   R+PV VL L +DP  VDVNV
Sbjct: 241 PSHNRGNALHQFAYVNGRPVRDKQLFGALRGAYADVMARDRHPVAVLFLTLDPALVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HPAK+ +RFR+P ++R  I+ +I++A+ + GI  ++  +  M+ +F  +           
Sbjct: 301 HPAKADVRFRDPGLVRGLIVGAIKQALAQSGIRPATSGADAMLQAFRAEGLQPSPSSFAS 360

Query: 353 --------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND---------- 394
                   +   + A     T+             D   S     SE             
Sbjct: 361 RSSSTGYASGGWRPAPPAPRTEWSPQTAHPAHRPLDFATSPSFQESEQATLAAVNVLAAD 420

Query: 395 -----PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                    +E     LG A AQIH NYI+SQT D LVIVDQHAAHERL++E ++   +S
Sbjct: 421 ARATVHEAPAELQQKPLGAARAQIHANYIVSQTEDSLVIVDQHAAHERLVYEALKNALHS 480

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             I  Q LL PEI+DL E +   +  H E L R G+  E+FGP AI +RE PA+L + N+
Sbjct: 481 RPIPGQMLLIPEIVDLPEEDAERLATHAETLARFGLGIEQFGPGAIVVRETPAMLGEMNV 540

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            QL+RD+ DEI +  T+  L+  + ++ ATMAC+GS+RSGR+++  EMN LLREME  P 
Sbjct: 541 QQLIRDLSDEIAEHDTSDGLKAMLNHVAATMACHGSVRSGRRLKPEEMNALLREMESTPG 600

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S  CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 601 SGTCNHGRPTYIELKLTDIERLFGR 625


>gi|307292927|ref|ZP_07572773.1| DNA mismatch repair protein MutL [Sphingobium chlorophenolicum L-1]
 gi|306880993|gb|EFN12209.1| DNA mismatch repair protein MutL [Sphingobium chlorophenolicum L-1]
          Length = 590

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 223/595 (37%), Positives = 352/595 (59%), Gaps = 7/595 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E ++N+IAAGE++ERP+ A+KE++EN++DA S R+   IA GG    +++D+G
Sbjct: 1   MSIRRLPEHLVNRIAAGEVVERPASALKEIVENAVDAGSRRIAIRIANGGLDRIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM S EI +A++RH TSK+ DD   N+ T GFRGEALPSI +V+ L++ SRP  ++ G 
Sbjct: 61  CGMDSSEIALALERHATSKLPDDAIENVATLGFRGEALPSIASVARLSIDSRPAGSD-GW 119

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +    + +  P A+ PGT V V  LF  +PAR  FL+S + E     DV+RR+A+A+
Sbjct: 120 NRTVDNGVVVNEGPAALPPGTRVIVEQLFGKVPARRKFLRSAKAEYAACLDVVRRLAMAH 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+          +       +    ++ +      +N V +  +   + L G   +
Sbjct: 180 PAIAFSMEHDGRRVLGVQADEAREDR---VAALTDRALADNHVIVALEREGVRLSGVASL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+NRG  +  ++F+NGR V+D+ ++  +R AYA+ +   R+PVV L L++ P +VDVNV
Sbjct: 237 PTYNRGVGDHQFLFVNGRPVRDRLLVGAVRGAYADMLARDRHPVVALFLDVPPLEVDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+P +IR  I+  +++A++ +G           +S++  +  P +  P  A
Sbjct: 297 HPAKTEVRFRDPALIRGMIVSGLRRALDAEGFRAVQHADPAGLSAWRPE--PVSPTPIGA 354

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             +           +         +  P    +       E T + LG+A  Q+ + YI+
Sbjct: 355 MPIFEAAGAPVPAYSVAERRPTFLTPPPQARAEPAAAPAPEGTSFPLGVARGQVARTYIV 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  DGLVIVDQHAAHERL  E+MR+      + +Q LL PE+++L E  C  +     +
Sbjct: 415 AEAEDGLVIVDQHAAHERLTLERMRRAMEGQGVAAQALLLPEVVELDEPACDRLEARIAE 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G++ ERFGP A+ +R  PA+L + ++  L+ D+ D++    +  +L++R++ + AT
Sbjct: 475 LKDFGLELERFGPAAMLVRATPAMLGQGDVQGLVSDLADDLAAYDSALSLKERLDLVAAT 534

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC+GS+R+GR +   EMN LLREME  P S QCNHGRPT++KL   DIEKLFGR
Sbjct: 535 MACHGSVRAGRILSVAEMNALLREMEITPRSGQCNHGRPTWVKLGHGDIEKLFGR 589


>gi|260753121|ref|YP_003226014.1| DNA mismatch repair protein [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258552484|gb|ACV75430.1| DNA mismatch repair protein MutL [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 613

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/615 (34%), Positives = 363/615 (59%), Gaps = 24/615 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +IN+IAAGE++ERP+ A+KEL+EN++DA+S+R+   +  GG    ++ DNG
Sbjct: 1   MSIRRLPEDVINRIAAGEVVERPASALKELVENAIDAQSTRILIRLLKGGLDGIEVIDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++E+ +A++RH TSK+ D+     + T GFRGEALPSI +V+ LTL SR   +++G
Sbjct: 61  IGIPADEMRLALERHATSKLPDNDAIEAVTTLGFRGEALPSIASVARLTLESRTADSDSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I +            +  GT ++V  LF  IPAR  F++S + E     D++RR+A+ 
Sbjct: 121 WKIIVDNGHFEKEGIAPLPKGTRIKVDSLFARIPARRKFMRSAKSEYMACHDIVRRLAMT 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P ++F+        + +N      +   R++ +I     +N+V +  + +++ L+G   
Sbjct: 181 RPDIAFSLEHDGRRIFSLN---GGESRQRRVAALIDRTLKDNSVAVEYQRDQMQLEGVAS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+RG A+  Y+F+NGR V+D+ ++ ++R AY + +   R+PV+ L L +    VD+N
Sbjct: 238 LPTFHRGLADHQYLFVNGRPVKDRLLIGSVRAAYHDLLAKDRHPVLALFLTLPNSDVDIN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN---APKTHL 355
           VHPAK  +RFR+   +R+ I+ +++++++  G  ++     + +  + + +   AP   +
Sbjct: 298 VHPAKGEVRFRDSQAVRSLIVGALRESLDLSGFKSAQPADVQAMGKWQKSSELAAPSKAV 357

Query: 356 PKYATSLTNTQEKLFLQENRLST----------------NDLLPSDDPTYSEDNDPVEES 399
           P + +  + +   L  +   +                                N   + S
Sbjct: 358 PSHESRQSLSDSGLLFKSRTIEAPKSTSIPTPQGTASDLWSAATKSPLPPMGRNSATDSS 417

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           E + + LG+A  QI   YII+++ DGLVIVDQHAAHERL+ E+MR+   + ++TSQ LL 
Sbjct: 418 EQSDFPLGLARGQIAATYIIAESKDGLVIVDQHAAHERLVMERMRRALQNGQVTSQRLLM 477

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+++++ E  C L  +  ++   +G++ ERFG  AI +R  PA+L    +  +++D+  E
Sbjct: 478 PDVVEMDEVSCDLFEQRQDEFAAMGLETERFGHEAILVRATPAMLGNCEVKAMIKDLAAE 537

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           I     +  L+++ ++I+ATMAC+GS+R+GR +   EMN LLREME  P+S QCNHGRPT
Sbjct: 538 IAAYDQSLLLKEKFDHIVATMACHGSVRAGRLLSIAEMNALLREMEITPHSGQCNHGRPT 597

Query: 580 FIKLKLSDIEKLFGR 594
           ++KL   DIEKLFGR
Sbjct: 598 WVKLGHKDIEKLFGR 612


>gi|86139358|ref|ZP_01057927.1| DNA mismatch repair protein [Roseobacter sp. MED193]
 gi|85823861|gb|EAQ44067.1| DNA mismatch repair protein [Roseobacter sp. MED193]
          Length = 645

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 257/631 (40%), Positives = 384/631 (60%), Gaps = 39/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + R+   IA GGK+  ++TD+G 
Sbjct: 15  TIRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGAHRITIEIADGGKTLIRVTDDGC 74

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GMTS ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR   ++  AQ
Sbjct: 75  GMTSRDLPLALSRHATSKIDGTDLLNIHTFGFRGEALPSLGAVGRLTITSRAAGHD-AAQ 133

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++G K+  VRP A+  GTIVE+ DLF+  PARL F+++++ E+  I DV++R+A+A P
Sbjct: 134 IRVAGGKMEPVRPAALRAGTIVELADLFYATPARLKFMRTDRAESQAIGDVVKRLAMAEP 193

Query: 181 KVSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITL 233
            V FT    S     R         G+  +    R++ V+G +F  NA++++     I L
Sbjct: 194 SVGFTLRDVSGGGEGRVTFRADPLTGDLFDALHGRLASVLGREFAENALKIDATREGIRL 253

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L ++ DP 
Sbjct: 254 FGYAALPTYSRGAAVAQFLFVNSRPVKDKMLTGALRGAYFDFLSRDRHPAAALFIDCDPT 313

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVNVHPAKS +RFR+P + R  I+ +++ A+ + G   S+ ++   + +   +     
Sbjct: 314 LVDVNVHPAKSEVRFRDPGLARGLIVSALRHALAEAGHRASTTVAGATLGAMRPEAPTAN 373

Query: 354 HLP---------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                              YA       +++ +     +                DP+ +
Sbjct: 374 GAARVYQMDRPSLGARNLSYAAQAPGQPQEMSVPAPPAAAPGFAEFQHEYSGRLTDPLAD 433

Query: 399 SEAT---------------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +EA                H  LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK+
Sbjct: 434 TEAPGQMSDAPEPTAPGAEHLPLGAARGQVHENYIIAQTADGMVIVDQHAAHERLVYEKL 493

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +Q      + +Q LL PEI++L   +CA I+   E+L + G+  E FG NA+A+RE PAI
Sbjct: 494 KQQMAENGVAAQALLIPEIVELGSNDCARILAQAEELKKFGLGLEAFGGNAVAVRETPAI 553

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L + N   +++DI+DE+ D   +  +Q R+E IL+ +AC+GS+RSGR+M+  EMN LLRE
Sbjct: 554 LGEVNAEAMVKDILDELDDQGESQLVQARLEAILSRVACHGSVRSGRRMRGEEMNALLRE 613

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 614 MEATPHSGQCNHGRPTYVELKLADIERLFGR 644


>gi|302878544|ref|YP_003847108.1| DNA mismatch repair protein MutL [Gallionella capsiferriformans
           ES-2]
 gi|302581333|gb|ADL55344.1| DNA mismatch repair protein MutL [Gallionella capsiferriformans
           ES-2]
          Length = 629

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 212/627 (33%), Positives = 335/627 (53%), Gaps = 33/627 (5%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   IR L E +INQIAAGE+IERP+ A+KEL+ENSLDA ++ +   +  GG    +I D
Sbjct: 1   MPSYIRVLPELLINQIAAGEVIERPAAALKELLENSLDAGATDITVQLDNGGIKLLRIRD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+  +E+ +A+ RH TSKI+  DD  ++ + GFRGEAL S+ AV+ LTL SR   + 
Sbjct: 61  NGRGIVRDELALALMRHATSKIASLDDLQSVESMGFRGEALASMAAVAQLTLSSRTAHDT 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  +     +IS   P +  PGT +E+R+L+F  PAR  FLKSE  E     +  +R+A
Sbjct: 121 HGWMVEAIDGRISEAAPASHPPGTTIELRELYFNTPARRKFLKSEATEFAHCEEAFKRIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF---------------PERISQVIGEDFINNA 221
           ++ P V F+        +++N      +                 +R++ ++G +F N A
Sbjct: 181 LSRPDVGFSLQHNGRTVWQLNPGLRIEDRGLRGEDDGGWMQNAALKRVAALLGAEFGNAA 240

Query: 222 VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
           V ++  +  +TL G   +P ++RGN +  Y F+NGR V+DK     +R AY + +   R+
Sbjct: 241 VPVSGSAANLTLHGLAALPAYSRGNRDAQYFFVNGRFVRDKVASHALRQAYQDILHHQRH 300

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           P  VL LE+   QVDVNVHPAKS +RFR    I  FI  ++Q+A+    +S ++   + +
Sbjct: 301 PAFVLFLELPAEQVDVNVHPAKSEVRFREGQGIHQFIFHTLQQALAAPALSGAATQERAI 360

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE- 400
            +             +   +    + +    +  + + +    +    S    P E S  
Sbjct: 361 QAPIPTQQRIPLAAAQLNATYQVWEAQTGSGKWGVKSGEAASGEWKVESGQTAPAESSSL 420

Query: 401 -------------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                        +T + LG A AQ+   YI++Q   GL++VD HAAHER+++EK++   
Sbjct: 421 PAIQSPTTSHYPLSTDHPLGFALAQLSGVYILAQNEQGLIVVDMHAAHERIVYEKLKASM 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +   I +Q LL P        + A +    + LH+LG   +   P  IAIR +P +L + 
Sbjct: 481 DHEAIATQPLLIPVCFQTDAHDVATVEAEQDALHKLGFDIKPLSPTQIAIRAMPVLLKQA 540

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
                 RDI++E+     +  L +R   +LA++AC+G++R+ R +   EMN LLREME+ 
Sbjct: 541 EAEAAARDILNELRKYGGSRMLTERRNELLASLACHGAVRANRILSVPEMNALLREMEQT 600

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             S QCNHGRPT+  L +++++K+F R
Sbjct: 601 ERSGQCNHGRPTWFALTMNELDKMFMR 627


>gi|110678039|ref|YP_681046.1| DNA mismatch repair protein [Roseobacter denitrificans OCh 114]
 gi|109454155|gb|ABG30360.1| DNA mismatch repair protein, putative [Roseobacter denitrificans
           OCh 114]
          Length = 610

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/601 (41%), Positives = 377/601 (62%), Gaps = 15/601 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  +N+IAAGE++ERP+ AIKEL+EN+LDA + ++      GGK+  ++ D+G G
Sbjct: 15  IRQLDEGAVNRIAAGEVVERPASAIKELVENALDASARKIAIDYGDGGKTLIRVQDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT+ ++P+A+ RH TSKI   D  NI TFGFRGEALPS+ AV  LT+++R   ++ G + 
Sbjct: 75  MTATDLPLALSRHATSKIDGSDLLNIQTFGFRGEALPSLAAVGRLTIVTRAGGDD-GVEA 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           ++SG     ++P A NPGT V +RDLF+  PARL FL+S++ E   I DV++R+A+A P 
Sbjct: 134 SVSGGDEKPLKPAACNPGTTVTIRDLFYATPARLKFLRSDRAEAQAIIDVVKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQ 234
           V F     S     R      +  G+       R+++V+G +F  NA+ ++ +   + L 
Sbjct: 194 VQFVLRDVSGDGPGREVFRADAQQGDLFGALHGRLARVLGREFAENALAIDAEREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+  +PT++RG+A   Y F+NGR V+DK ++  +R AY++ +   R+P   L L+ DP+ 
Sbjct: 254 GFAALPTYSRGSAVAQYFFVNGRPVKDKLLVGALRGAYSDFLSRDRHPAAALFLDCDPKL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHPAKS +RFR+P I R  I+ +++ A+ + G   S+ +S   + +   +    + 
Sbjct: 314 VDVNVHPAKSEVRFRDPGIARGLIVSALRHALAEAGHRASTTVSTATLGAMQPEPIGARV 373

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +    A+   +            +  ++          D D     +   Y LG A  Q+
Sbjct: 374 YQMDQASRPVSAPPP-----QTPAFQEVAAPWGRVAETDPDEQTAGDPGDYPLGAARGQV 428

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYII+QT  G+VIVDQHAAHERL++EK+++      + SQ LL PEI++L   +CA +
Sbjct: 429 HENYIIAQTATGMVIVDQHAAHERLVYEKLKRQMAENGVASQALLIPEIVELSAADCASL 488

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           M+  +DL RLG   E FG +AIA+RE PAIL   +   L+ DI+DE+ D + +  ++ RI
Sbjct: 489 MQISDDLARLGFVVEPFGGDAIAVRETPAILGVVDARALILDILDELADQNASENIRMRI 548

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + IL+ +AC+GSIRSGR M++ EMN LLREME  P+S QCNHGRPT+++LKLSDIE+LFG
Sbjct: 549 DAILSRVACHGSIRSGRWMKTEEMNALLREMEATPHSGQCNHGRPTYVELKLSDIERLFG 608

Query: 594 R 594
           R
Sbjct: 609 R 609


>gi|118590698|ref|ZP_01548099.1| DNA mismatch repair protein [Stappia aggregata IAM 12614]
 gi|118436674|gb|EAV43314.1| DNA mismatch repair protein [Stappia aggregata IAM 12614]
          Length = 630

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 262/633 (41%), Positives = 393/633 (62%), Gaps = 43/633 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MK+R+L E++INQIAAGE+IERP+  IKELIEN++DA + +VE V A GGK+  ++ D+G
Sbjct: 1   MKVRQLGEQVINQIAAGEVIERPASVIKELIENAVDAGAKQVEIVTAAGGKTLMRVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM  E++ +A++RHCTSKISDD   +I T GFRGEALPSIG+V+ L + +R    +   
Sbjct: 61  EGMRREDLQLAIRRHCTSKISDDDLFDIRTLGFRGEALPSIGSVARLAIQTRHKDEDHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            IA+ G +   + P A   GT VEVRDLFF  PARL FLKS++ E   IT++++R+A+AY
Sbjct: 121 AIAVEGGREQPLVPAARTKGTQVEVRDLFFATPARLKFLKSDRAEAAAITEIVKRIALAY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F+                +     RI+Q++G+DF++NA+E++     + L G+ G+
Sbjct: 181 PEIGFSLGGADRQSQSWPAARGSEPHLARIAQILGQDFVDNAMEIDAAREGVRLTGFAGL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RGNA   + F+NGR V+DK +LS +R AYA+ +   R+PVVVL +++DP  VDVNV
Sbjct: 241 PTHHRGNAQNQFFFVNGRPVKDKLLLSGLRGAYADVLARDRHPVVVLFIDLDPTLVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA------PKT 353
           HPAK+ +RFR+  ++R  ++ +I+ A+ + G  +S+  +   + +    +A      P  
Sbjct: 301 HPAKADVRFRDSQLVRGLLVGAIKHALVQSGHRSSTSNAAVALDAIRAQSAGFAQPGPTP 360

Query: 354 HLPK--------------------------------YATSLTNTQEKLFLQENRLSTNDL 381
             P                                  AT      +  F ++N  +    
Sbjct: 361 SAPAGSGGYGGGSYTRTSAAPHWAPDAFSPLQMESTPATGFAEAPQPAFERQNGFADFAR 420

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
             +D       ND   E+E T   LG A AQ+H+ YII+QT DG+VIVDQHAAHERL++E
Sbjct: 421 PSADARA----NDVPVETEKTRLPLGAARAQVHETYIIAQTEDGVVIVDQHAAHERLVYE 476

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           ++++      +  Q LL PEI++L E +   + +  EDL ++G+  E FGP AIA+RE P
Sbjct: 477 RLKEALARKDVARQILLIPEIVELPEEDAIRLADRAEDLEKVGLSLEAFGPGAIAVRETP 536

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           AIL   +I  ++R++ DE+ +  T   L+++++++ ATMAC+GS+R+GR+M+  EM+ LL
Sbjct: 537 AILGDMDIQGMVRNLADELAEWDTAEGLKEKLDHVAATMACHGSVRAGRRMRPEEMDALL 596

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ME  P S QCNHGRPT+++LKL DIEKLFGR
Sbjct: 597 RDMEATPLSGQCNHGRPTWVELKLGDIEKLFGR 629


>gi|325266000|ref|ZP_08132686.1| DNA mismatch repair protein MutL [Kingella denitrificans ATCC
           33394]
 gi|324982638|gb|EGC18264.1| DNA mismatch repair protein MutL [Kingella denitrificans ATCC
           33394]
          Length = 623

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 214/624 (34%), Positives = 336/624 (53%), Gaps = 36/624 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENSLDA ++ +   +AGGG    ++TDNG 
Sbjct: 3   RIHALPDHLVNQIAAGEVVERPAAALKEIVENSLDAGATHISVELAGGGIKLIRVTDNGN 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI    D  ++ + GFRGE L SI +VS LTL SR        
Sbjct: 63  GIHADDLPLALSRHATSKIKQLHDLEHVRSMGFRGEGLASIASVSRLTLTSRTADLPHAH 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I      +S+V   A   GT VEVR+LFF  PAR  FLKSE  E      ++ R+A+A 
Sbjct: 123 EIRAEDGVLSAVNAAAHPEGTTVEVRELFFNTPARRKFLKSENTEYAHCAAMLERLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+ +F+ +      ++   QS      ER++ V+G +F + ++ ++     + + G+   
Sbjct: 183 PQAAFSLAHNGKTVFRYPVQS----LEERMAAVMGAEFQSASLPVDSGEGAVRVHGFVSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G +   + F+N R V+DK +L  ++ AY + +     P   L LE+ P  VDVNV
Sbjct: 239 PTFAKGKSELQFCFVNRRFVRDKVVLHAVKQAYRDVLHHKITPAFALFLEMPPEMVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI------------------NKKGISTSSVLSKKM 341
           HP K+ IRFR+   +   +  ++ KA+                   ++  +  S L  + 
Sbjct: 299 HPTKTEIRFRDSQAVHRLVFHTLDKALEGTRADMTGSVGNAGDILQQRFPNVQSSLHTET 358

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND-----------LLPSDDPTYS 390
            +      AP    P Y+      Q  L L+ENR +               +     T  
Sbjct: 359 AAMPTSGEAPSAPAP-YSAYRAPQQRSLSLKENRAALQTYAELYRRDDDFPIEKAACTPK 417

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
           +     E +E   Y LG A AQ+   YI++QT +GL++VD HAA ER+ +EKM+      
Sbjct: 418 QPAPEAEAAEPPEYPLGFALAQLLGIYILAQTAEGLILVDMHAAAERVNYEKMKAQRQQG 477

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            + +Q LL P +      E A++ EH E L   G+     G   IA+R +PA+L K +  
Sbjct: 478 SLQTQMLLIPPVFAASHTERAVLAEHGETLREYGLLLSDEGNGQIAVRSVPAMLGKADAV 537

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            L ++++ E+    ++ T++     I ATMAC+GS+R+GR++   EMN LLR+ME    S
Sbjct: 538 ALAQNVLRELGSVGSSQTVESMENRIFATMACHGSVRAGRQLTLPEMNALLRDMENTSRS 597

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
           +QCNHGRPT++ L L+D++ LF R
Sbjct: 598 NQCNHGRPTWVHLALADLDALFLR 621


>gi|49473918|ref|YP_031960.1| DNA mismatch repair protein [Bartonella quintana str. Toulouse]
 gi|81827643|sp|Q6G0J4|MUTL_BARQU RecName: Full=DNA mismatch repair protein mutL
 gi|49239421|emb|CAF25760.1| DNA mismatch repair protein mutL [Bartonella quintana str.
           Toulouse]
          Length = 612

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/611 (44%), Positives = 396/611 (64%), Gaps = 17/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KEL+EN++DA ++R+E V A GGKSF +++DNG
Sbjct: 1   MIIRHLSENIINQIAAGEVIERPANVVKELVENAIDAGATRIEIVTANGGKSFIKVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++++ +A+ RHCTSKI+DD  NI+  GFRGEALPSIG+V+ L L SR  +     +
Sbjct: 61  CGIPADQLTLAISRHCTSKITDDVHNIYFLGFRGEALPSIGSVAKLKLTSRTQEAENATE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  KI   +P A NPGTIVEVRDLFF  PARL F+K+++ ETN I+D+I+R+AIA+P
Sbjct: 121 IIVTAGKIIGPKPAAANPGTIVEVRDLFFVTPARLKFMKTDRAETNAISDMIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ S +     ++   + +     +RI+Q++G++F  N++ LN K   I L G+  +
Sbjct: 181 HIRFSLSGLDRTSMELPATANSTQGQLQRITQIMGKEFAPNSIALNAKRESIRLTGFACL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++N R V+DKF+  TIR AYA+ +   RYPV +L +++ P  VDVNV
Sbjct: 241 PSFNRSNSLHQFAYVNRRPVRDKFLWGTIRGAYADVMARDRYPVSILFIDLPPADVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RFR+P +IR  I+ +I +A+++ G+  +S  S+ M+S+F       T    + 
Sbjct: 301 HPTKADVRFRDPGLIRGLIVGAIHEALHQIGVRPASTCSEAMLSAFQTSQPLGTFKSTHQ 360

Query: 360 TS------LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV----------EESEATH 403
           T       L +       +    +    L  +     E  D              SE  H
Sbjct: 361 TFSSQHHHLASAAASPLHKPLDATNFVNLREEAVPLMECLDMPSGDICTANTTPSSEELH 420

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           Y LG A AQIH+NYII+QT D L+IVDQHAAHERL++E ++    S  + SQ LL PEI+
Sbjct: 421 YPLGAARAQIHKNYIIAQTQDSLIIVDQHAAHERLVYEALKDALYSKPLPSQLLLIPEIV 480

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +L E +   ++ H + L + G+  E FGP AI +RE P++L + N+  L++D+ DE  + 
Sbjct: 481 ELSEEDATCLLTHKDALQKFGLGIESFGPGAIVVRETPSMLGEVNVQALIKDLADEAAEY 540

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            TT  L+  I+ + ATMAC+GSIRSGR +++ EMN LLR++E  P++  CNHGRPT+I+L
Sbjct: 541 DTTNNLKAMIDCVAATMACHGSIRSGRLLRAEEMNALLRQIEATPHTGTCNHGRPTYIEL 600

Query: 584 KLSDIEKLFGR 594
           KL+DIE+LFGR
Sbjct: 601 KLADIERLFGR 611


>gi|148253233|ref|YP_001237818.1| DNA mismatch repair protein [Bradyrhizobium sp. BTAi1]
 gi|166231106|sp|A5ECL8|MUTL_BRASB RecName: Full=DNA mismatch repair protein mutL
 gi|146405406|gb|ABQ33912.1| DNA mismatch repair protein MutL [Bradyrhizobium sp. BTAi1]
          Length = 618

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/617 (38%), Positives = 368/617 (59%), Gaps = 23/617 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E+IIN+IAAGE++ERP+  +KEL+EN++DA +SR++    GGG+    ITD+G
Sbjct: 1   MPVRQLPEQIINRIAAGEVVERPASVVKELVENAIDAGASRIDIFTDGGGRRKIAITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT+ ++ +AV+RH TSK+ D D   I T GFRGEALPSIG+V+ L++ +R        
Sbjct: 61  GGMTAADLALAVERHATSKLDDEDLLQIRTLGFRGEALPSIGSVARLSITTRHKSEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +   + S V P A+N GT VEV DLF   PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 ALQVDCGEKSPVVPAALNQGTRVEVADLFHATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF ++A+ +      + ++G+  
Sbjct: 181 PDIAFTIAGEERAPVTWAAALPGAPGQLTRLGDILGADFRSHAIAVQSARESVAVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R NA   Y+F+NGR V+DK IL  +R AYA+ +P  R+PVV L + +DPR+VD N
Sbjct: 241 APALTRANALGQYLFVNGRPVRDKLILGAVRAAYADYLPRDRHPVVALFVTLDPREVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP-- 356
           VHPAK+ +RFRN  ++R  II ++++ + ++G  T++      I++F    AP    P  
Sbjct: 301 VHPAKTEVRFRNAGLVRALIIHALKEGLAREGRRTAANDGGATIAAFRPAFAPPRPNPGP 360

Query: 357 ---KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED----------------NDPVE 397
               +  S +     +       +           ++E                 ++   
Sbjct: 361 MNWDWQRSPSAPAAPVPRDHGADAMPAAAAFSPAAFAEPAQAAFDVGGPRADLRLHEQPA 420

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
             +     LG A  Q+H  YI++QT DGLVIVDQHAAHER+++E+++   ++  +  Q L
Sbjct: 421 APDLLDRPLGAARTQLHDTYIVAQTRDGLVIVDQHAAHERIVYERLKASLSAHGVQRQIL 480

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P+I++L E     ++   ++L   G+  E FGP A+A+RE P++L K N   LLRD+ 
Sbjct: 481 LIPDIVELDEAIVEALLARTDELASFGLAIESFGPGAVAVRETPSLLGKINAAGLLRDLA 540

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           + + +      L+ R+ ++ ATMAC+GS+R+GR+++  EMN LLREME+ PNS QCNHGR
Sbjct: 541 EHMEEWGEALPLERRLMHVAATMACHGSVRAGRRLKPEEMNALLREMEETPNSGQCNHGR 600

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT+++LKL+D+EKLFGR
Sbjct: 601 PTYVELKLADVEKLFGR 617


>gi|294011778|ref|YP_003545238.1| DNA mismatch repair protein MutL [Sphingobium japonicum UT26S]
 gi|292675108|dbj|BAI96626.1| DNA mismatch repair protein MutL [Sphingobium japonicum UT26S]
          Length = 590

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 223/595 (37%), Positives = 350/595 (58%), Gaps = 7/595 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E ++N+IAAGE++ERP+ A+KE++EN++DA S R+   I+ GG    +++D+G
Sbjct: 1   MSIRRLPEHLVNRIAAGEVVERPASALKEIVENAVDAGSRRIAIRISNGGLDRIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM S EI +A++RH TSK+ DD   N+ T GFRGEALPSI +V+ L++ SRP  ++ G 
Sbjct: 61  CGMDSSEIALALERHATSKLPDDAIENVATLGFRGEALPSIASVARLSIDSRPAGSD-GW 119

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +      S  P A+ PGT V V  LF  +PAR  FL+S + E     DV+RR+A+A+
Sbjct: 120 NRTVDNGVTVSEGPAALPPGTRVIVEQLFGKVPARRKFLRSAKAEYAACLDVVRRLAMAH 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+          +       +    ++ +      +N V +  +   + L G   +
Sbjct: 180 PAIAFSMEHDGRRVLGVQAGEAREDR---VAALTDRALADNHVIVALEREGVRLSGVASL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT++RG  +  ++F+NGR V+D+ ++  +R AYA+ +   R+PVV L L++ P +VDVNV
Sbjct: 237 PTYHRGVGDHQFLFVNGRPVRDRLLVGAVRGAYADMLARDRHPVVALFLDVPPLEVDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+P +IR  I+  +++A+  +G           +S++  +  P +  P  A
Sbjct: 297 HPAKTEVRFRDPALIRGMIVSGLRRALEAEGFRAVQHADPAGLSAWRSE--PVSPTPIGA 354

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             +           +         +  P    +       E T + LG+A  Q+ + YI+
Sbjct: 355 MPIFEAAGAPVPTHSMADRRPAFLTPPPQARAEPAAAPAPEGTSFPLGVARGQVARTYIV 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  DGLVIVDQHAAHERL  E+MR+      I +Q LL PE+++L E  C  +     +
Sbjct: 415 AEAEDGLVIVDQHAAHERLTLERMRRAMEGQGIAAQALLLPEVVELDEPACDRLEARIAE 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G++ ERFGP A+ +R  PA+L + ++  L+ D+ D++    +  +L++R++ + AT
Sbjct: 475 LKDFGLELERFGPAAMLVRATPAMLGQGDVQGLVSDLADDLAAYDSALSLKERLDLVAAT 534

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC+GS+R+GR +   EMN LLREME  P S QCNHGRPT++KL   DIEKLFGR
Sbjct: 535 MACHGSVRAGRILSVAEMNALLREMEITPRSGQCNHGRPTWVKLGHGDIEKLFGR 589


>gi|83951218|ref|ZP_00959951.1| DNA mismatch repair protein [Roseovarius nubinhibens ISM]
 gi|83839117|gb|EAP78413.1| DNA mismatch repair protein [Roseovarius nubinhibens ISM]
          Length = 636

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 259/622 (41%), Positives = 388/622 (62%), Gaps = 31/622 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN+LD+ ++R+E   A GGKS  ++TDNG G
Sbjct: 15  IRQLDDAAINRIAAGEVVERPASAVKELVENALDSGATRIEISQAQGGKSLIRVTDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++P+A+ RH TSKI   D  NIH+FGFRGEALPS+GAV  LT+ SR   ++  A+I
Sbjct: 75  MTPQDLPLALSRHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTIQSRAAGHD-AAEI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +SG  +S+ RP A++ GT+V +RDLF+  PARL F++S++ ET  I DV++R+A+A P 
Sbjct: 134 TVSGGDMSAPRPTALSAGTVVTLRDLFYATPARLKFMRSDRAETQAIADVVKRLAMAEPS 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    +     R         G+       R+++V+G +F  NA++++     + + 
Sbjct: 194 VGFTLRDVTGGGEGRVTFRADPEQGDLFDALHRRLARVLGAEFAENAIKIDASREALRMT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   Y+F+NGR V+DK +   +R AY + +   R+P  VL L  DP  
Sbjct: 254 GYAALPTYSRGAAVAQYLFVNGRPVRDKMLTGALRAAYHDLLSRDRHPAAVLFLTCDPTL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+  ++ A+ ++G   SS ++   + +F  +      
Sbjct: 314 VDVNVHPAKSEVRFRDPALARGLIVSGLRHALAEEGHRASSTVAGATLGAFRPEATAPGQ 373

Query: 355 LPK-YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN-------------------- 393
            P+ Y         +    + +        S  P +++                      
Sbjct: 374 APRVYQMDRPGPASRAMAYQAQAPLTGAPLSQSPGFADLQAGYSARVEPDELSAPLADHP 433

Query: 394 -DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
               +        LG A AQIH+NYII+QT DGLVIVDQHAAHERL++EK++       +
Sbjct: 434 GHEAQADAPLSAPLGAARAQIHENYIIAQTEDGLVIVDQHAAHERLVYEKLKTQQAERGV 493

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL PEI++L +G+   +++  EDL  LG+  E FG +A+A+RE+PAIL   +   L
Sbjct: 494 AAQALLIPEIVELSDGDRGALLDAAEDLAALGLVIEEFGGSAVAVREVPAILGAVDARAL 553

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L D++DE+ D  ++ T++ RI+ IL+ +AC+GSIRSGR+M++ EMN LLREME  P+S Q
Sbjct: 554 LLDVLDELSDQGSSMTIRGRIDAILSRVACHGSIRSGRRMRAEEMNALLREMEATPHSGQ 613

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT++KL+L+DIE+LFGR
Sbjct: 614 CNHGRPTYVKLQLADIERLFGR 635


>gi|241760909|ref|ZP_04758998.1| DNA mismatch repair protein MutL [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374528|gb|EER63989.1| DNA mismatch repair protein MutL [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 613

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/615 (35%), Positives = 359/615 (58%), Gaps = 24/615 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E +IN+IAAGE++ERP+ A+KEL+EN++DA+S+R+   +  GG    ++ DNG
Sbjct: 1   MSIRRLPEDVINRIAAGEVVERPASALKELVENAIDAQSTRILIRLLKGGLDGIEVIDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++E+ +A++RH TSK+ D+     + T GFRGEALPSI +V+ LTL SR   +++G
Sbjct: 61  IGIPADEMRLALERHATSKLPDNDAIEAVTTLGFRGEALPSIASVARLTLESRTADSDSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I +            +  GT ++V  LF  IPAR  F++S + E     DV+RR+A+ 
Sbjct: 121 WKIIVDNGHFEKEGIAPLPKGTRIKVDSLFARIPARRKFMRSAKSEYMACHDVVRRLAMT 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P ++F+        + +N      +   R++ +I     +N+V +  + +++ L+G   
Sbjct: 181 RPDIAFSLEHDGRRIFSLN---GGESRQRRVAALIDRTLKDNSVTVEYQRDQMQLEGVAS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+RG A+  Y+F+NGR V+D+ ++ ++R AY + +   R+PV+ L L +    VD+N
Sbjct: 238 LPTFHRGLADHQYLFVNGRPVKDRLLIGSVRAAYHDLLAKDRHPVLALFLTLPNSDVDIN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  +RFR+   +R+ I+ +++++++  G  ++     + +  + + +         
Sbjct: 298 VHPAKGEVRFRDSQAVRSLIVGALRESLDLSGFRSAQPADVQAMGKWRKSSDLPISTNPA 357

Query: 359 A---------------TSLTNTQEKLFLQENRLSTNDLLPS----DDPTYSEDNDPVEES 399
           A                S      K    +    T D L S            N   + S
Sbjct: 358 AIHEEKSALSDSGLLFKSRPTEAPKAPSAQAHQRTADDLWSAATKSPIPPMGRNTSTDSS 417

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           E + + LG+A  QI   YII+++ DGLVIVDQHAAHERL+ E+MR+   + ++ SQ LL 
Sbjct: 418 EQSDFPLGLARGQIAATYIIAESKDGLVIVDQHAAHERLVMERMRRALENGQVASQRLLM 477

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+++++ E  C L  +  ++   +G++ ERFG  AI +R  PA+L    +  +++D+  E
Sbjct: 478 PDVVEMDEVSCDLFEQRQDEFAAMGLETERFGHEAILVRATPAMLGNCEVKAMIKDLAAE 537

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           I     +  L+++ ++I+ATMAC+GS+R+GR +   EMN LLREME  P+S QCNHGRPT
Sbjct: 538 ITAYDQSLLLKEKFDHIVATMACHGSVRAGRLLSIAEMNALLREMEITPHSGQCNHGRPT 597

Query: 580 FIKLKLSDIEKLFGR 594
           ++KL   DIEKLFGR
Sbjct: 598 WVKLGHKDIEKLFGR 612


>gi|30249702|ref|NP_841772.1| mutL; DNA mismatch repair protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180739|emb|CAD85653.1| mutL; DNA mismatch repair protein [Nitrosomonas europaea ATCC
           19718]
          Length = 604

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 217/604 (35%), Positives = 330/604 (54%), Gaps = 15/604 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L + +I+QIAAGE+IERP+  +KEL+EN++DA ++ +   IA GG    ++TDNG 
Sbjct: 3   PIKLLPDGLISQIAAGEVIERPASVLKELLENAIDAGTTDISVNIAQGGLKLIRVTDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ EE+P+A+ RH TSKI+  +D   I + GFRGE L SI +VS+L L+S  P      
Sbjct: 63  GISGEELPLALTRHATSKIASQEDLYRITSLGFRGEGLASIASVSNLLLISHQPGGKHAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI   G ++    P +   GT VEVRDLFF +PAR  FLK+E  E     ++IRRMA+++
Sbjct: 123 QIRSEGIRVMQPEPSSHAAGTTVEVRDLFFNLPARRKFLKTEATEFAHCEEIIRRMALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++FT     +    +     +     RI  V+GE+F  +A  ++E+S  I LQG   +
Sbjct: 183 AGIAFTLRHNGN----LRGHWQSAEAAVRIKTVLGEEFTRSAAWIDERSAGIGLQGMLAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P ++R   +  Y F+NGR V+DK I   +R AY + + L R+   VL L+IDP QVDVNV
Sbjct: 239 PAYSRAARDMQYFFVNGRFVRDKLITHALREAYRDVLHLDRHAAFVLYLDIDPEQVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-----KKGISTSSVLSKKMISSFHQDNAPKTH 354
           HP K+ IRFR    I  FI   + KA++      +   +SS L    I    +   P   
Sbjct: 299 HPTKTEIRFREARAIHQFIYHGVSKALSLPRSGTELSQSSSQLMADDIVPPAEKRVPAAP 358

Query: 355 LPKYATSLTNTQE----KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
           +  Y        E         +    +     +    + +              LG A 
Sbjct: 359 MLNYPRQTGLPSEMIAQPFNFYQVLSGSESDSTATQNPFRQTGAGESNEHPALPPLGFAL 418

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+H  YI++Q   GLVIVD HAAHER+++E+++   +   +++Q LL P        + 
Sbjct: 419 GQLHGVYILAQNWKGLVIVDMHAAHERIVYEQLKLQMDEQTLSAQRLLIPVTFHADSLDI 478

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A   E+   L +LG +        +A+R +PAIL   +  +L+ +++DEI +      L 
Sbjct: 479 ATAEENQSLLQQLGFEVTVLTATTLAVRAVPAILQDADTEKLVCNVLDEIRNGDPGQLLA 538

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            R   +LATMAC+G++R+ R +  IEMN LLR+ME    S QCNHGRPT+ ++ L++++K
Sbjct: 539 ARRNELLATMACHGAVRANRPLTLIEMNELLRKMEVTERSDQCNHGRPTWFEISLAELDK 598

Query: 591 LFGR 594
           +F R
Sbjct: 599 MFMR 602


>gi|187929904|ref|YP_001900391.1| DNA mismatch repair protein [Ralstonia pickettii 12J]
 gi|187726794|gb|ACD27959.1| DNA mismatch repair protein MutL [Ralstonia pickettii 12J]
          Length = 647

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 202/631 (32%), Positives = 330/631 (52%), Gaps = 45/631 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 22  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 81

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR   +    
Sbjct: 82  GIPADELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTAHDAHAT 141

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     +    +P +   GT V+V+ L+F  PAR  FLK+EQ E     +VIRR A+A 
Sbjct: 142 QI---IAQTGRAQPASGGVGTTVDVQHLYFNTPARRKFLKTEQTELGHCMEVIRRTALAR 198

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N    +     R + V+G +F    +   E + E+ L G+ G+
Sbjct: 199 PDVAISVHHNGKPLEHWNATQADS----RSAAVLGTEFARARLPFEESAGELRLFGFAGL 254

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 255 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 314

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP+K  +RFR+   +  F+  ++Q+A+++        L   +  +           P   
Sbjct: 315 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIAEAPEGAGVATAPSPADN 374

Query: 357 --KYATSLTNTQEKLFLQENRLST-----NDLLPSDDPTYSEDNDPVEES---------- 399
             ++   +   Q  L + + R         D  P      +   D    +          
Sbjct: 375 TTRWINQMAARQTSLGIAQPRAEYLSMMRGDSAPMPPTRPAWMADVPSAATLFDGGAATA 434

Query: 400 ----------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                           E   + LG A AQ+H  Y+++Q T G+V+VD HAAHER+++E++
Sbjct: 435 QSPAAVAEPAAAQQADEDDAHPLGFAVAQLHGIYVLAQNTRGMVLVDMHAAHERILYEQL 494

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +    + ++  Q LL P        E     E  + L  LG       P  +A+R +P +
Sbjct: 495 KTALETKRVEVQPLLIPVTFAANPVEIGTAEEFRDTLTLLGFDISAVSPTTLAVRSVPTL 554

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN LLR+
Sbjct: 555 LQKADAQALARDVLRDLHAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMNALLRQ 614

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 615 MEATERADQCNHGRPTWIQLTVADLDRLFLR 645


>gi|82702273|ref|YP_411839.1| DNA mismatch repair protein MutL [Nitrosospira multiformis ATCC
           25196]
 gi|82410338|gb|ABB74447.1| DNA mismatch repair protein MutL [Nitrosospira multiformis ATCC
           25196]
          Length = 616

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 213/615 (34%), Positives = 336/615 (54%), Gaps = 27/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + +I+QIAAGE++ERP+ A+KEL+ENSLDA ++ V   +  GG    ++ DNG G
Sbjct: 4   IQPLPDLLISQIAAGEVVERPASALKELLENSLDAGATEVTVQLFQGGVKLVRVADNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E++P+A+ RH TSKI   +D  N+ + GFRGEAL SI +VS L L+SR   +    +
Sbjct: 64  ISGEDLPLALARHATSKIRTLEDLQNVPSLGFRGEALASIASVSRLALVSRSAGDKHAWR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     + +   P A   GT VE+RDL+F  PAR  FLK+E  E      V +R+A++ P
Sbjct: 124 IEAEAGRFTPPEPAAFAQGTAVEMRDLYFNTPARRKFLKTEATEFAHCESVFKRIALSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V FT     + R  +       +   RI+ V+G++F   +V +++++ ++ L G   +P
Sbjct: 184 SVGFTLQHNGTVRSHLRT----ADARLRIAAVLGDEFSQASVFVDDQAADLRLWGMAALP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            ++R + +  Y F+NGR V+DK +   +R AY + + L R+P  VL LEI+   VDVNVH
Sbjct: 240 AYSRSSGDAQYFFVNGRFVRDKLVAHALREAYRDILHLDRHPAFVLFLEINGGGVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSF------HQDNAPKT 353
           P+K+ +RFR+P  +  FI  ++ KA+    ++  ++V     +  F          AP  
Sbjct: 300 PSKTEVRFRDPRALHQFIFHTVDKALAMPHLTGGAAVPVAGKLPEFTRKAAGEVSLAPPA 359

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--------------S 399
           +  + A    +   ++   + +     L  SD    +                       
Sbjct: 360 YSRQDAIPFASAAPQIKAAQPQAFYQVLFGSDSNAGTRQTGYQAGINGQSAFMKPEGTVR 419

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           E     LG A AQ+   YI+SQ   GL+IVD HAAHER+++EK++   ++  ++ Q LL 
Sbjct: 420 EPEIPPLGFALAQLLGVYILSQNERGLLIVDMHAAHERILYEKLKSALDNHTLSMQPLLI 479

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P        + A   E+   LH +G +   F P  +A+R +PA L   ++  L RD+++E
Sbjct: 480 PAAFRADSQDIATAEENSAVLHDIGFEISPFSPVMLAVRAVPAALKDADVVTLARDVLNE 539

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           I +   +  L  R   +LATMAC+G+IR+ R +   EMN LLREME    S QCNHGRPT
Sbjct: 540 IREFGGSQVLVSRRNELLATMACHGAIRANRSLSIPEMNALLREMEITERSGQCNHGRPT 599

Query: 580 FIKLKLSDIEKLFGR 594
           + ++  +D++K+F R
Sbjct: 600 WFEISRTDLDKMFMR 614


>gi|13476839|ref|NP_108408.1| DNA mismatch repair protein [Mesorhizobium loti MAFF303099]
 gi|20455124|sp|Q983L2|MUTL_RHILO RecName: Full=DNA mismatch repair protein mutL
 gi|14027600|dbj|BAB53869.1| DNA mismatch repair protein; MutL [Mesorhizobium loti MAFF303099]
          Length = 627

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/627 (43%), Positives = 397/627 (63%), Gaps = 34/627 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+  +KEL+EN+LDA +SRVE V AGGG +  ++TD+G
Sbjct: 1   MPIRQLSETMINQIAAGEVIERPASVVKELVENALDAGASRVEVVTAGGGLNLIRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+   E+ +A+ RHCTSK+++D ++I + GFRGEALPSIG+VS L++ SR    ++ A+
Sbjct: 61  SGIPEPELALAIARHCTSKLAEDINDIRSLGFRGEALPSIGSVSRLSIRSRTALGDSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++  VRP A N GT VEVRDLFF  PARL F+K E+ E++  +DV++R+AIA+P
Sbjct: 121 IGIEGGRVLPVRPAAANRGTTVEVRDLFFATPARLKFMKGERAESSATSDVVKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            V FT +    +  ++     S  G+    ++QV+G +F +N++ ++     + L G+  
Sbjct: 181 AVRFTLAGSDRSTLELPATDDSPEGSLRR-VAQVMGAEFPDNSIAIDAMREGVHLTGHVS 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           IP+F+R NA Q Y ++NGR V+DK I   IR A+A+ +P  R+ V VL L +DP  VDVN
Sbjct: 240 IPSFSRANALQQYAYVNGRPVRDKLIAGAIRGAFADVLPRDRHAVTVLFLTLDPAIVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL--- 355
           VHPAK+ +RFR+P ++R  I+ +I++A+   GI +++  +  M+++F    A   H    
Sbjct: 300 VHPAKADVRFRDPGLVRGLIVGAIRQALADAGIRSATTGAAGMMAAFRPGAASYNHGGPA 359

Query: 356 -------------------PKYATSLT-----NTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                              P  +            E+   +    S       D      
Sbjct: 360 NGHRSYEAAYRASGSAGFDPARSPQRPLDMQFGDFERAGARHGGFSEPGQAAFDTGPLVS 419

Query: 392 DNDPVEESEATHYQLGIACA----QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +  V ++E T   LG        Q+H+NYI++QT D LVIVDQHAAHERL++E ++   
Sbjct: 420 ADARVGQNETTETLLGTVLGAARAQVHENYIVAQTRDSLVIVDQHAAHERLVYEALKNAL 479

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +S  + SQ LL PEIIDL E +   +  H E L R G+  ERFGP A+A+RE P++L + 
Sbjct: 480 HSRPVPSQMLLLPEIIDLPEEDAERLAMHSETLARFGLGIERFGPGAVAVRETPSMLGET 539

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           N+ QL+RD+ DEI D+ T  TL++R++ I ATMAC+GS+RSGR +++ EMN LLR+ME  
Sbjct: 540 NVQQLVRDLADEIADNDTVETLKERLDKIAATMACHGSVRSGRLLKAEEMNALLRQMEAT 599

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           P S  CNHGRPT+I+LKL+DIE+LFGR
Sbjct: 600 PGSGTCNHGRPTYIELKLADIERLFGR 626


>gi|240849931|ref|YP_002971320.1| DNA mismatch repair protein MutL [Bartonella grahamii as4aup]
 gi|240267054|gb|ACS50642.1| DNA mismatch repair protein MutL [Bartonella grahamii as4aup]
          Length = 617

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 267/617 (43%), Positives = 399/617 (64%), Gaps = 24/617 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KEL+EN++DA ++R+E + A GGK+F +++DNG
Sbjct: 1   MIIRHLSENIINQIAAGEVIERPANVVKELVENAIDAGATRIEIITANGGKNFIKVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +G+ ++++ +AV RHCTSKI+DD  NI   GFRGEALPSIG+V+ L L+SR     + A+
Sbjct: 61  YGIPADQLTLAVSRHCTSKITDDVHNICFLGFRGEALPSIGSVAKLKLISRTKDAESAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+++  KI   +P A N GTIVEVRDLFF  PARL F+K+++ ETN I+D+I+R+AIA+P
Sbjct: 121 ISVTAGKIVGPKPAAANLGTIVEVRDLFFVTPARLKFMKTDRAETNAISDMIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ S +     +++   +      +RI+Q++G++F  N++ LN +   + L G+  +
Sbjct: 181 HIRFSLSGLDRTSMELSATENNIQGQLQRITQIMGKEFAPNSIALNAEREAVRLTGFACL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DKF+   IR AYA+ +   RYPV +L +++ P +VDVNV
Sbjct: 241 PSFNRNNSLHQFAYVNGRPVRDKFLWGAIRGAYADVMTRDRYPVAILFIDLPPAEVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+P +IR  I+ +I++A+ + GI  +S  S+  +++F Q   P    P   
Sbjct: 301 HPAKADVRFRDPGLIRGLIVGAIREALQQSGIRPTSTRSEATLAAF-QIQKPLVQQPLGN 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED----------------------NDPVE 397
              T+       Q +  +   ++       S                         +   
Sbjct: 360 FKNTHQSSSYSPQPHHFAAASMVHKPLDITSSFGLKEDATPIMEGLNIPSGDTYIPNTTS 419

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
            SE   Y LG A AQIH+NYII+QT D L+IVDQHAAHERL++E ++    S  + SQ L
Sbjct: 420 SSEELSYPLGAARAQIHKNYIIAQTQDSLIIVDQHAAHERLVYEALKNALYSKPLPSQLL 479

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L PEI++L E +   ++ H + L + G+  E FGP AI +RE P++L + N+  L++D+ 
Sbjct: 480 LIPEIVELSEEDATCLLTHKDALQKFGLGIEPFGPGAIVVRETPSMLGEINVQALIKDLA 539

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           DE  +  TT  L+  ++ + ATMAC+GSIRSGR ++  EMN LLR+ME  PN+S CNHGR
Sbjct: 540 DEAAEYDTTNNLKAMLDYVAATMACHGSIRSGRLLRPEEMNTLLRQMEAIPNTSTCNHGR 599

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT+I+LKL+DIE+LFGR
Sbjct: 600 PTYIELKLADIERLFGR 616


>gi|83859480|ref|ZP_00953001.1| DNA mismatch repair protein MutL [Oceanicaulis alexandrii HTCC2633]
 gi|83852927|gb|EAP90780.1| DNA mismatch repair protein MutL [Oceanicaulis alexandrii HTCC2633]
          Length = 638

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/637 (38%), Positives = 377/637 (59%), Gaps = 43/637 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR+LS + +N+IAAGE++ERP+ A+KEL+EN+LDA + R++  I GGG +   I D+
Sbjct: 1   MTLIRRLSPETVNRIAAGEVVERPASAVKELVENALDAGAQRIDIRIEGGGLTRIVIEDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKI------SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP 113
           G GM +E +  A++RH TSK+       DD  NIH+ GFRGEALPSIG+V+ L + ++  
Sbjct: 61  GSGMDAEGLETAIERHATSKLPVGEDGQDDLLNIHSMGFRGEALPSIGSVARLNITTQDE 120

Query: 114 QNNTGAQIAISGEKISSVRPVA--MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +     ++++ G   S  RP       GT VEV DLF+  PARL FLKSE+ E+  ++DV
Sbjct: 121 ELGGAWELSVEGGTKSGPRPAPSLGRRGTRVEVCDLFYATPARLKFLKSERAESTAVSDV 180

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNEKS 228
           I+R+A+A P V F  S    +R     +ST         R+S ++G DF  NA+ ++++ 
Sbjct: 181 IKRLALARPDVGFFLSVDGRSRVSAPAESTEDRDEARRGRLSSILGADFGENALVIDQER 240

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
             + L G   +PT+NRG+    ++F+NGR V+DK I+  +R AY + +   R+PVV L +
Sbjct: 241 EGVHLTGLASLPTYNRGSNQHQFLFVNGRPVKDKLIVGAVRGAYQDFLARDRHPVVALYV 300

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           ++    VDVNVHPAK+ +RFR+  ++R  I+ +++ A+   G   S+ ++   +     +
Sbjct: 301 DLPSSHVDVNVHPAKAEVRFRDSGLVRGLIVGALRHALAGAGHRASTTVAGYALGRARPE 360

Query: 349 NAPKTHLP-----KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP-------- 395
            AP   LP       ++   N     +  +              + +E +          
Sbjct: 361 GAPTHALPLTRGSSISSGWANRPSPAWESQLSEHHETSGYGYGESQTEASQYGRGDLAPG 420

Query: 396 ------------------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                               E+    + LG+A AQ+H  Y+I+QT DGLVIVDQHAAHER
Sbjct: 421 MSARTEPSYGGEPADGAPAAETHTPDFPLGVARAQVHATYVIAQTEDGLVIVDQHAAHER 480

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L++E+M++    T +  Q LL PEI++L E E   +++  E L  LG+  E FGP A+A+
Sbjct: 481 LVYERMKKQLADTGVARQALLVPEIVELDEAEARRVLDRAEQLAELGLVIEPFGPGALAV 540

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           RE PA+L + ++  L+RD+ DEI +     +L++++E ++ TMAC+GS+RSGR++   EM
Sbjct: 541 RETPALLKRLDVQGLIRDLADEIAEYDEALSLKEKLEEVVGTMACHGSVRSGRRLTGDEM 600

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N LLREME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 601 NALLREMEATPHSGQCNHGRPTYVELKLADIERLFGR 637


>gi|224826520|ref|ZP_03699621.1| DNA mismatch repair protein MutL [Lutiella nitroferrum 2002]
 gi|224601121|gb|EEG07303.1| DNA mismatch repair protein MutL [Lutiella nitroferrum 2002]
          Length = 629

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 218/629 (34%), Positives = 329/629 (52%), Gaps = 40/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENSLDA + R+   +A GG    ++TDNG 
Sbjct: 3   RIHALPDHLVNQIAAGEVVERPASALKEMLENSLDAGADRITVDLAQGGIKLIRVTDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI+   D  ++ T GFRGE L SI +VS LTL+SRP +     
Sbjct: 63  GIVPDDLPLALDRHATSKIASLADLESVATLGFRGEGLASIASVSRLTLISRPHEEAHAY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI      + SV P A  PGT VEV DL+F  PAR  FLKSE  E         R+A+A+
Sbjct: 123 QIIAIDGALHSVEPAAHAPGTSVEVVDLYFNTPARRKFLKSENTEYAHCAATFERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F         +++  QS      ER+  ++G+DF+  A+ L   +  + L G+   
Sbjct: 183 PQVEFLLRHNGKVVWRLPAQS----LAERVGALLGKDFVEAALPLETAAGGLQLAGFVAS 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+++ + +  Y ++NGR V+DK     +R AY + +   R+P   L L IDP  VDVNV
Sbjct: 239 PTYSKASRDAQYFYVNGRFVRDKTAQHALRQAYRDVLHHDRHPAYALFLTIDPAGVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR    I  F+  S+ KA+       +  ++     +           P  A
Sbjct: 299 HPTKIEVRFRESQAIHQFLFHSVNKALAATTAGAAPAVALAEGVATPSSANLSGASPAPA 358

Query: 360 TSLTNTQ----------------------------------EKLFLQENRLSTNDLLPSD 385
                +Q                                    L  +E +  T    P  
Sbjct: 359 GLFATSQTGNGRTPVQSYRYEQQSIPLGVAREAIGVYDAMFSGLREEERQADTRPAGPLP 418

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
            P  +     + +S+     LG A AQ+H  YI+SQ  +GL++VD HAAHER+++E+++ 
Sbjct: 419 SPLPAATLATLPDSDDGIPPLGFALAQLHGVYILSQCQEGLIVVDMHAAHERIVYERLKN 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
              +  I  Q LL P        E A + EH E++ RLG++     P  IA+R +P  L 
Sbjct: 479 ALEADSIPMQPLLLPVSFAADRMEAATVHEHGEEMKRLGVELAPLSPTQIAVRGVPVWLK 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             N  +L R ++ ++ +   T  L +R   +LATMAC+G++R+ R++   EMN LLR+ME
Sbjct: 539 DGNPVELARAVLKDVREFGLTRVLTERRNELLATMACHGAVRANRQLTLAEMNALLRDME 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               S QCNHGRPT+ +L + D++ LF R
Sbjct: 599 ATERSGQCNHGRPTWSRLTMKDLDNLFMR 627


>gi|113869023|ref|YP_727512.1| DNA mismatch repair protein [Ralstonia eutropha H16]
 gi|113527799|emb|CAJ94144.1| DNA mismatch repair protein MutL [Ralstonia eutropha H16]
          Length = 660

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 205/648 (31%), Positives = 336/648 (51%), Gaps = 62/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++++   +  GG     ITDNG 
Sbjct: 18  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLGIRLEEGGVRRIVITDNGC 77

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ + E+P+A+ RH TSKI+  D+  ++ T GFRGEAL SI +VS L L SR   +    
Sbjct: 78  GIPAAELPVALMRHATSKIASLDELESVLTLGFRGEALASIASVSQLALTSRTAADAHAT 137

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q++     +   +P +   GT V+V+ L+F  PAR  FLKSEQ E     +++RR+A+A 
Sbjct: 138 QVSADTGTV---QPASGGVGTTVDVQHLYFNTPARRKFLKSEQTELGHCLEMVRRVALAR 194

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N     G+   R +QV+G DF    + L+E+++ + L G+ G+
Sbjct: 195 PDVTISVHHNGKPLEHWNA----GDVATRTAQVLGNDFARARLPLDEEADTLHLYGFAGL 250

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG  +Q Y F+NGR V+DK +   +R+AY + +   R+P  VL L++ P  VDVNV
Sbjct: 251 PTASRGRPDQQYFFVNGRFVRDKLLNHAVRSAYQDVLHGDRFPSYVLCLDLPPEMVDVNV 310

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL---- 355
           HP+K  +RFR    +  F+  ++Q+ + ++       L           +   T      
Sbjct: 311 HPSKIEVRFRESRAVHQFVYHAVQRCLARQAGGNGDSLHTDADGEITLPSGGATPAGGAR 370

Query: 356 ----------PKYATSLTNTQEKLFLQENRLST----NDLLPSDDPTYSEDNDPVEESEA 401
                      ++       Q +L + + R +      D        Y        ++ A
Sbjct: 371 PGFGGGSGGGGQWINYSAARQTELGIAQPRQAYLGMVRDAAAPAARPYGAMPGTPAQAPA 430

Query: 402 T-----------------------------------HYQLGIACAQIHQNYIISQTTDGL 426
                                                + LG A AQ+H  Y+++Q   GL
Sbjct: 431 WLADAQAARADDPPGLLDRLPPAARAGFADPADAPDDHPLGYAIAQLHGIYVLAQNARGL 490

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           V+VD HAAHER+++E+++   ++  +  Q LL P  +     E  +  EH E L  LG  
Sbjct: 491 VLVDMHAAHERILYEQIKAGLDARDLAVQPLLIPVTLPGSPVEIGVAEEHQETLTLLGFD 550

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
                P  +A+R +PA+L + +   L RD++ ++     +  L +R   +LAT+AC+ ++
Sbjct: 551 IAPVSPTTLAVRAVPALLQQADAEALARDVLRDLHAYGGSRVLAERRNELLATLACHSAV 610

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ RK+   EMN LLR+ME+   + QCNHGRPT+++L ++++++LF R
Sbjct: 611 RANRKLTLEEMNALLRQMEQTERADQCNHGRPTWVQLTVTELDRLFLR 658


>gi|253998998|ref|YP_003051061.1| DNA mismatch repair protein MutL [Methylovorus sp. SIP3-4]
 gi|253985677|gb|ACT50534.1| DNA mismatch repair protein MutL [Methylovorus sp. SIP3-4]
          Length = 624

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 210/623 (33%), Positives = 332/623 (53%), Gaps = 35/623 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+ A+KEL+ENSLDA SS +   +  GG    ++TD+G G
Sbjct: 4   IKLLPDQLISQIAAGEVVERPASALKELLENSLDAGSSDIAVTLGQGGVKLLRVTDDGNG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++ +A+ RH TSKI+  DD  ++ + GFRGEAL SI ++S  ++ SR  + +   +
Sbjct: 64  IPHGDLTLALTRHATSKIASLDDLESVASLGFRGEALASIASISRTSITSRHAEASHAWR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA  G  +    P A++ GTIVEV+D++F  PAR  FLK+EQ E     +  RR+A++ P
Sbjct: 124 IAADGGLLGDAAPAALDRGTIVEVQDIYFNTPARRKFLKTEQTEFGHCEEAFRRIALSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F          ++      G    R ++V+G DF   A EL+E +  + L G    P
Sbjct: 184 DVGFMLQHNGRALMRL----APGEAKRRFTEVLGPDFSAEAFELDESAGGLRLWGMAAKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+R   +  YV++NGR V+DK I   IR AY + +   R+P   L LE+DP  VDVNVH
Sbjct: 240 TFSRSARDTQYVYVNGRFVRDKLISHAIRQAYQDVLHHDRHPAFALFLELDPTLVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-----------VLSKKMISSFHQDN 349
           P+K+ +RFR    +  FI  ++ KA+       ++                 I +     
Sbjct: 300 PSKTEVRFREGQAVHRFIFHALHKALATPVGLPANGLVPPPAAAPATSYSPGIPAGQPYP 359

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLS------------TNDLLPSDDPTYSEDNDPVE 397
             +      A       + LF    R +            ++  L +        +    
Sbjct: 360 RQQGSFDLRANEAPGFYQTLFGGLPREAVDTASSFVPSAISSADLQATLSPSQASSSLSP 419

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E  A  Y LG A AQ+H  Y+++Q   GL++VD HAAHER+++E+++   +   +  Q L
Sbjct: 420 EQAAQEYPLGFALAQLHGVYVLAQNALGLIVVDMHAAHERIMYERLKNALDGDSVPMQPL 479

Query: 458 LTPEIIDLLEGECALIMEH------DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           L P   +    E A + E        + LH+LG +  +  P+ +A+R IPA+L   +   
Sbjct: 480 LLPVSFNADRFEVATVQEQLSTPEGQQTLHQLGFEIVQLSPSTLAVRAIPAMLQDADAVA 539

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L RD++ ++ +   +  L +R   +LATMAC+ ++R+ R +   EMN LLR+ME    S 
Sbjct: 540 LARDVLRDLREYGGSRVLTERRNELLATMACHAAVRANRILSIQEMNALLRDMEATERSG 599

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+ +  ++D++K+F R
Sbjct: 600 QCNHGRPTWFQATMADLDKMFMR 622


>gi|17547282|ref|NP_520684.1| DNA mismatch repair protein [Ralstonia solanacearum GMI1000]
 gi|20455088|sp|Q8XWB1|MUTL_RALSO RecName: Full=DNA mismatch repair protein mutL
 gi|17429584|emb|CAD16270.1| probable dna mismatch repair protein mutl [Ralstonia solanacearum
           GMI1000]
          Length = 636

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 206/632 (32%), Positives = 336/632 (53%), Gaps = 46/632 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 10  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR  Q+    
Sbjct: 70  GIPVDELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTAQDAHAT 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++   +P +   GT V+V+ L+F  PAR  FLK+EQ E     +VIRR A+A 
Sbjct: 130 QIIAQTGRV---QPASGGVGTTVDVQHLYFNTPARRKFLKTEQTELGHCLEVIRRTALAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N          R + V+G +F    +   E + E+ L G+ G+
Sbjct: 187 PDVAISVHHNGKPLEHWNA----AQADMRTAAVLGTEFARARLPFEEAAGELRLFGFAGL 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 243 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA---PKTHLP 356
           HP+K  +RFR+   +  F+  ++Q+A+++        L   +  +  Q  A   P  +  
Sbjct: 303 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIADAPEQPGATATPADNTT 362

Query: 357 KYATSLTNTQEKLFLQENRL--------------STNDLLPSDDPTYSEDND-------- 394
           ++   +   Q  L + + R               S+     +D P+ +   D        
Sbjct: 363 RWVNQMAARQTSLGIAQPRAEYLAMMRGGSAPQPSSRPAWMADVPSAATLFDGAASAPAD 422

Query: 395 ------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                       P  +     + LG A AQ+H  Y+++Q   G+V+VD HAAHER+++E+
Sbjct: 423 AAPAQASEPAAAPQADDSDDAHPLGFAVAQLHGIYVLAQNARGMVLVDMHAAHERILYEQ 482

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
           ++    + +I  Q LL P        E     E  + L  LG       P  +A+R +P 
Sbjct: 483 LKTALEARRIEVQPLLIPVTFAASPVEIGTAEEFGDTLDLLGFDISAVSPTTLAVRAVPT 542

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN LLR
Sbjct: 543 LLQKADAQALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMNALLR 602

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 603 QMEATERADQCNHGRPTWIQLTVADLDRLFLR 634


>gi|114799039|ref|YP_759640.1| DNA mismatch repair protein [Hyphomonas neptunium ATCC 15444]
 gi|114739213|gb|ABI77338.1| putative DNA mismatch repair protein MutL [Hyphomonas neptunium
           ATCC 15444]
          Length = 634

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 228/624 (36%), Positives = 359/624 (57%), Gaps = 32/624 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IRKL   ++N+IAAGE++ERP+ A+KEL+EN+LDA +  +   I  GG     I D+G 
Sbjct: 10  TIRKLPADVVNRIAAGEVVERPAAAVKELVENALDAGARSIAIAIEEGGLKRITIEDDGC 69

Query: 62  GMTSEEIPMAVQRHCTSKI------SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           G++++++ +A++RH TSK+        D  NI+T GFRGEALPSI +VS + ++SR    
Sbjct: 70  GLSADDLLIALERHATSKLVPDTEGRVDLLNIYTMGFRGEALPSIASVSRMRIVSRASGE 129

Query: 116 NTGAQIAISGEKISSVRPV----AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +  A+I     ++   RP         GT ++V DLF   PARL F++ E+ E   +TD 
Sbjct: 130 D-AAEIFSDAGRLDGPRPAAFTGRSETGTRIDVNDLFHATPARLKFMRGERAEAMAVTDA 188

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNE 230
           ++R+A+A P+V+F+  +   + ++   +   +    +R+  ++G DF +NAV ++     
Sbjct: 189 VKRLAMANPEVAFSLESNGRSLFRYPAEGPGDAGRLKRLGAIMGRDFSDNAVAVDATREG 248

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           + L G+ G+PT NRGNA   ++F+NGR V+D+ +   +R AY + +   R+P+  L +++
Sbjct: 249 VRLSGFAGLPTLNRGNAQMQFLFVNGRPVKDRMLTGVVRAAYQDFLARDRHPMAALFVDL 308

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           DP  VDVNVHPAK+ +RFR+   +R  +I +++ A+   G   S+ ++   +     + A
Sbjct: 309 DPEGVDVNVHPAKTEVRFRDAGGVRGLMISALRHALAAAGHRASTTVAGFALGKARAEPA 368

Query: 351 PKT----HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT---- 402
           P+       P+    +            R    D   +         D V +  A     
Sbjct: 369 PQAGFLWQAPQPGGYVQRPAMPPQGYAARQVEEDGASAPFAPRGYVPDYVPDQGAPGAKV 428

Query: 403 ------------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                        Y LG A AQ+H+ YII+QT DG+VIVDQHAAHERL++E M++     
Sbjct: 429 ETGPMPAPGMLGEYPLGAARAQVHETYIIAQTADGIVIVDQHAAHERLVYEAMKRQMAEG 488

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            +  Q LL P+I++L E E   +    E+L  LG++ E FGP AIA+R  PA+  + +  
Sbjct: 489 GVRRQALLIPDIVELSEDEAHRVCARAEELAALGLEIEPFGPGAIAVRATPALFGEMDAA 548

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            L+RD+ D+  +     TL +R E ++  MAC  SIR+GR++ + EMN LLR+ME  P+S
Sbjct: 549 GLIRDLADDFAEYEAGLTLSERFEEVMGNMACRSSIRAGRRLNADEMNALLRQMEATPHS 608

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 609 GQCNHGRPTYVELKLADIERLFGR 632


>gi|255263413|ref|ZP_05342755.1| mismatch repair protein MutL [Thalassiobium sp. R2A62]
 gi|255105748|gb|EET48422.1| mismatch repair protein MutL [Thalassiobium sp. R2A62]
          Length = 605

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/601 (40%), Positives = 376/601 (62%), Gaps = 20/601 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++D+ + R++   A GGKS  ++ D+G G
Sbjct: 15  IRQLDDAAINRIAAGEVVERPASAVKELVENAVDSGARRIDVSYADGGKSLIRVVDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + + ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  L++ SR   +     I
Sbjct: 75  IEAADLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLSITSRATGD--AHVI 132

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G  +  VRP A++ GT VE+RDLF+  PARL F++S++ E   I DV++R+A+A P 
Sbjct: 133 KVEGGTMQPVRPAALSAGTTVELRDLFYATPARLKFMRSDRAEAQAIGDVVKRIAMAEPF 192

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V+ T    +     R      +  G+  +    R+++V+G +F  N++ ++ +     L 
Sbjct: 193 VAITLRDVTGGGEGRVVFRADAEQGDLFDALHGRLARVLGREFAENSILVDTEREGFHLT 252

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG++   Y+F+NGR V+DK +   +R AY++ +   R+P   L ++ DP  
Sbjct: 253 GYAALPTYSRGSSVAQYLFVNGRPVRDKMLYGALRGAYSDFLSRDRHPAAALFIDCDPTL 312

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA-PKT 353
           VDVNVHPAKS +RFR P I+R  I+  ++ A+   G   S+ ++   + +F  +    + 
Sbjct: 313 VDVNVHPAKSEVRFREPGIVRGLIVSGLRHALADAGHRASTTVAGATLGAFTPEPTGARV 372

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +     T+      ++  Q         +  +        D   +     + LG A  Q+
Sbjct: 373 YQMDRPTAGFAIAAQMAPQ---------VFEEAAAVFARVDETPQVVEQDHPLGAARGQV 423

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYII+QT DG+VIVDQHAAHERL++E+++       + +Q LL PEI++L E +C  +
Sbjct: 424 HENYIIAQTKDGMVIVDQHAAHERLVYERLKNQMAENGVAAQALLIPEIVELSESDCTRL 483

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           ME   DL +LG+  E FG  A+A+RE PAIL + N   +LRD++DE+ D   +  +Q +I
Sbjct: 484 MEVAGDLAKLGLTIEPFGGGAVAVRETPAILGEVNAEAMLRDVLDELDDVGDSQLVQAKI 543

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E IL+ +AC+GSIRSGR M++ EMN LLREME  P+S QCNHGRPT+++LKL+DIE+LFG
Sbjct: 544 EAILSRVACHGSIRSGRWMRAEEMNALLREMEATPHSGQCNHGRPTYVELKLADIERLFG 603

Query: 594 R 594
           R
Sbjct: 604 R 604


>gi|163739395|ref|ZP_02146806.1| DNA mismatch repair protein MutL [Phaeobacter gallaeciensis BS107]
 gi|161387465|gb|EDQ11823.1| DNA mismatch repair protein MutL [Phaeobacter gallaeciensis BS107]
          Length = 650

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 256/635 (40%), Positives = 378/635 (59%), Gaps = 44/635 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++TD+G G
Sbjct: 16  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGATRITIEIADGGKTLIRVTDDGCG 75

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M+  ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  L++ SR       AQI
Sbjct: 76  MSPADLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLSITSRAKDQE-AAQI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G +   V+P A+  GT+VE+RDLF+  PARL F++S++ ET  I DVI+R+A+A P 
Sbjct: 135 RVAGGRTEPVKPAALRVGTVVELRDLFYATPARLKFMRSDRAETQAIGDVIKRLAMAEPS 194

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R         G+  +    R++ V+G +F  NA++++   + + L 
Sbjct: 195 VGFTLRDVSGGGEGRVTFRADPLTGDLFDALHGRLATVLGREFAENALKIDATRDGVRLF 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L L+ DP  
Sbjct: 255 GYAALPTYSRGAAVAQFLFVNTRPVKDKMLTGALRAAYFDFLSRDRHPAAALFLDCDPTL 314

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ +++  + + G   SS ++   + +   +      
Sbjct: 315 VDVNVHPAKSEVRFRDPGVARGLIVSALRHGLAEAGHRASSTVAGATLGAMRPEPMASQP 374

Query: 355 LPKYATSL----------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
               A  +                     +  +  + +           +YS       E
Sbjct: 375 GADGAPRIYQMDRPSLGARSLSYAAQAPGQSGIAGSDMPPPSGFAELAQSYSGRVTETPE 434

Query: 399 SEATHYQLGIAC-------------------AQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           S+      G                       Q+H+NYII+QT DG+VIVDQHAAHERL+
Sbjct: 435 SQNPAMAPGQPFERSETSAPGAEQLPLGAARGQVHENYIIAQTADGMVIVDQHAAHERLV 494

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +EK+++    T + +Q LL PEI++L EG+CA I+   +DL+R G+  E FG  AIA+RE
Sbjct: 495 YEKLKRQMAETGVAAQALLIPEIVELSEGDCARILAVADDLNRFGLGIEAFGGGAIAVRE 554

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            PAIL   N   ++RDI+DE+ D   +  +Q +IE IL+ +AC+GSIRSGR M+  EMN 
Sbjct: 555 TPAILGTVNAEAMVRDILDELDDQGESQLVQAKIEAILSRVACHGSIRSGRWMRGEEMNA 614

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LLREME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 615 LLREMEATPHSGQCNHGRPTYVELKLADIERLFGR 649


>gi|306840954|ref|ZP_07473695.1| DNA mismatch repair protein MutL [Brucella sp. BO2]
 gi|306289011|gb|EFM60276.1| DNA mismatch repair protein MutL [Brucella sp. BO2]
          Length = 618

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/616 (43%), Positives = 390/616 (63%), Gaps = 28/616 (4%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           SE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG G+ ++
Sbjct: 2   SETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNGSGIPAD 61

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G ++ ++G 
Sbjct: 62  ELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFEVCVTGG 121

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
            +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P + F+ 
Sbjct: 122 HLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFPHIRFSL 181

Query: 187 STIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
           +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GIP+FNRG
Sbjct: 182 AGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGIPSFNRG 241

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSY 305
           NA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNVHPAK+ 
Sbjct: 242 NALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNVHPAKAD 301

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKYATSLTN 364
           +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ A S + 
Sbjct: 302 VRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRPANSYSP 361

Query: 365 TQEKLFLQENRLSTNDLLPSDDP--------------------------TYSEDNDPVEE 398
              +      R   +                                    +  +     
Sbjct: 362 ASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPAFREDGQAILGDVAAPAADARASVAEAP 421

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I  Q LL
Sbjct: 422 VELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPIAGQMLL 481

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL+RD+ D
Sbjct: 482 IPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQLIRDLAD 541

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           EI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  CNHGRP
Sbjct: 542 EIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGTCNHGRP 601

Query: 579 TFIKLKLSDIEKLFGR 594
           T+I+LKL+DIE+LFGR
Sbjct: 602 TYIELKLTDIERLFGR 617


>gi|326553690|gb|ADZ88329.1| DNA mismatch repair protein [Brucella melitensis M5-90]
          Length = 618

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/616 (43%), Positives = 391/616 (63%), Gaps = 28/616 (4%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           SE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG G+ ++
Sbjct: 2   SETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNGSGIPAD 61

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL SRP   ++G ++ ++G 
Sbjct: 62  ELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSRPQDADSGFEVCVTGG 121

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
            +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P + F+ 
Sbjct: 122 HLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFPHIRFSL 181

Query: 187 STIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
           +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GIP+FNRG
Sbjct: 182 AGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGIPSFNRG 241

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSY 305
           NA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNVHPAK+ 
Sbjct: 242 NALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNVHPAKAD 301

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKYATSLTN 364
           +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ A S + 
Sbjct: 302 VRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRPANSYSP 361

Query: 365 TQEKLFLQENRLSTNDLLPSDDP--------------------------TYSEDNDPVEE 398
              +      R   +                                  + +  +     
Sbjct: 362 ASWRTAPPAPRSEWSPQTAQTAHRPLDLQAAPALRENGQAVLGDVAVPASDARASVAEAP 421

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I  Q LL
Sbjct: 422 VELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPIAGQMLL 481

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL+RD+ D
Sbjct: 482 IPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQLIRDLAD 541

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           EI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  CNHGRP
Sbjct: 542 EIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGTCNHGRP 601

Query: 579 TFIKLKLSDIEKLFGR 594
           T+I+LKL+DIE+LFGR
Sbjct: 602 TYIELKLTDIERLFGR 617


>gi|325983238|ref|YP_004295640.1| DNA mismatch repair protein MutL [Nitrosomonas sp. AL212]
 gi|325532757|gb|ADZ27478.1| DNA mismatch repair protein MutL [Nitrosomonas sp. AL212]
          Length = 597

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 221/597 (37%), Positives = 330/597 (55%), Gaps = 8/597 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L E +INQIAAGE++ERP+ A+KE++ENS+DA + ++   +  GG    ++ D+G 
Sbjct: 3   TIKPLPELLINQIAAGEVVERPAAALKEILENSVDAGAKKINVQLQQGGVKQIRVADDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+T +E+ +A+ RH TSKIS  +D   I + GFRGEAL SI A+S LTL SR    +   
Sbjct: 63  GITKDELQLALTRHSTSKISTLEDLHQITSLGFRGEALASIAAISRLTLASREAAQSHAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G+ +S   P ++  GT ++V DL+F IPAR  FLKSE  E     +  +R+A++ 
Sbjct: 123 QILVEGKSVSQPMPASLAQGTTLDVNDLYFNIPARRKFLKSEATEFAHCDETFKRIALSQ 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + F        R  +      G+  +RI+ V+G++F   A  ++E+S E+ L G   +
Sbjct: 183 SGIEFVLQHNGKVRRHLRA----GDPAQRIASVLGDEFKQTAAWIDEQSAEMHLHGMVAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P + R + +  Y F+N R V DK I   +R AY + + L R+P  VL L+I P  VDVNV
Sbjct: 239 PAYARSSRDTQYFFVNHRFVNDKLISHALREAYRDVLHLERHPAFVLFLDIHPGSVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RFR P  +  FI  +I KA++     +SS     +   +              
Sbjct: 299 HPTKTEVRFREPRALHQFIFHAINKALSSGQKESSSGEPVSIARPYPIYPKTGPAQGGTV 358

Query: 360 TSLTNTQEKLFLQENR--LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           +   +    LF  E R   +    +    P    D      +   ++ LG A  Q+H  Y
Sbjct: 359 SQPASFYGTLFGTEARSIPTIPVNIAPAAPAIKPDKSIAIGNNQDNHPLGFALGQLHGIY 418

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I++Q   GL++VD HAAHER+++EK++Q  +  +I  Q LL P        E A I E+ 
Sbjct: 419 ILAQNARGLIVVDMHAAHERILYEKLKQALDQHEIPMQPLLIPVTFYAEHLEIAAIEENQ 478

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             L +LG +     P  +A+R +PA L   +I QL RDI+ EI +   +  L  +   IL
Sbjct: 479 TILDQLGFEIAVLSPTTVAVRAVPATLQHADIAQLARDILREIREYGASQILTAKRNEIL 538

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ATMAC+G+IR+ RK+   EMN LLREME    + QCNHGRPT+ +  L+D++KLF R
Sbjct: 539 ATMACHGAIRANRKLTLEEMNALLREMEMTERADQCNHGRPTWFETSLADLDKLFMR 595


>gi|254473678|ref|ZP_05087074.1| DNA mismatch repair protein [Pseudovibrio sp. JE062]
 gi|211957390|gb|EEA92594.1| DNA mismatch repair protein [Pseudovibrio sp. JE062]
          Length = 679

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 258/652 (39%), Positives = 394/652 (60%), Gaps = 58/652 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+LS+  IN+IAAGE+IERP+  +KEL+EN++DA ++R+E V A GGKS  +ITDNG
Sbjct: 27  MAVRQLSDTTINRIAAGEVIERPASVVKELVENAVDAGATRIEIVTATGGKSLLRITDNG 86

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT E++ +AV+RHCTSK+ + D  +I T GFRGEALPSIGA+S L + +R        
Sbjct: 87  AGMTKEDLQLAVRRHCTSKLPENDLMDIRTMGFRGEALPSIGAISRLEITTRHASEPHAW 146

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G + S V P A+N GT VEV+D+FF++PARL FLKS++ E   IT++I+R+A+A 
Sbjct: 147 KIEVEGGQNSEVEPAALNAGTRVEVKDIFFSVPARLKFLKSDRAEATAITEIIKRIALAN 206

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + FT S     + ++   + +     RI Q++G +F  NA+E+      + L GY G+
Sbjct: 207 PTIRFTLSGSDRRQLELPACTGDDADLARIGQILGAEFTKNAMEIEALREGVHLYGYAGL 266

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF+R N+   + F+NGR V+DK +L +++ AY++ +   R+P+VVL +++DP QVDVNV
Sbjct: 267 PTFHRANSQHQFFFVNGRPVRDKLLLGSLKAAYSDVLSRDRHPIVVLNIDLDPHQVDVNV 326

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------------ 347
           HPAK+ +RFR+  ++R  +I +++ A  + G   S+  ++  I++               
Sbjct: 327 HPAKADVRFRDGQLVRGLLIGALKNAFVQSGFRASTANTQSAINAIRPMGQGAGFNVHSG 386

Query: 348 -DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-------- 398
                +    + A S +  Q     +E+  S        +    E    + E        
Sbjct: 387 ASAHTQQGHREAAQSYSWRQSAYRPEESSASVWSAADIPEAGTQETQLGLMEATAPYTAS 446

Query: 399 ------------------------------------SEATHYQLGIACAQIHQNYIISQT 422
                                                +  ++ LG A AQIH+ YI+SQT
Sbjct: 447 PEPSMGQDSAAEQGHQAYNLVDAPSADSRAHVHELPEDRENFPLGAARAQIHETYIVSQT 506

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            DGLVIVDQHAAHERL++E++++D     +  Q LL PEI+DL E + A + E   +L  
Sbjct: 507 KDGLVIVDQHAAHERLVYEQLKEDLAKRDVPRQMLLIPEIVDLPEDDVARLEERASELEE 566

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
           +G+  ERFGP AIA+RE P++L + NI  L++D+ D+  +  ++  ++++++ + ATMAC
Sbjct: 567 VGLVLERFGPGAIAVRETPSMLKRLNIKALVQDLADDFAEYDSSTRIREKLDLVAATMAC 626

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +GSIR+GR+M+  EM+ LLR+ME  P S QCNHGRPT+I+LKL DIE+LFGR
Sbjct: 627 HGSIRAGRRMRPEEMDNLLRDMEATPKSGQCNHGRPTWIELKLHDIERLFGR 678


>gi|163743610|ref|ZP_02150986.1| DNA mismatch repair protein [Phaeobacter gallaeciensis 2.10]
 gi|161383081|gb|EDQ07474.1| DNA mismatch repair protein [Phaeobacter gallaeciensis 2.10]
          Length = 650

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 257/635 (40%), Positives = 379/635 (59%), Gaps = 44/635 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GGK+  ++TD+G G
Sbjct: 16  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGATRITIEIADGGKTLIRVTDDGCG 75

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M+  ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  L++ SR       AQI
Sbjct: 76  MSPADLPLALSRHATSKIDGSDLLNIHTFGFRGEALPSLGAVGRLSITSRAKDQE-AAQI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G +   V+P A+  GT+VE+RDLF+  PARL F++S++ ET  I DVI+R+A+A P 
Sbjct: 135 RVAGGRTEPVKPAALRVGTVVELRDLFYATPARLKFMRSDRAETQAIGDVIKRLAMAEPS 194

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R         G+  +    R++ V+G +F  NA++++   + + L 
Sbjct: 195 VGFTLRDVSGGGEGRVTFRADPLTGDLFDALHGRLATVLGREFAENALKIDATRDGVRLF 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+N R V+DK +   +R AY + +   R+P   L L+ DP  
Sbjct: 255 GYAALPTYSRGAAVAQFLFVNTRPVKDKMLTGALRAAYFDFLSRDRHPAAALFLDCDPTL 314

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN----- 349
           VDVNVHPAKS +RFR+P + R  I+ +++  + + G   SS ++   + +   +      
Sbjct: 315 VDVNVHPAKSEVRFRDPGVARGLIVSALRHGLAEAGHRASSTVAGATLGAMRPEPMASQP 374

Query: 350 ----APKTHLPKYATSLTNTQEKLFLQENR-------LSTNDLLPSDDPTYSEDNDPVEE 398
               AP+ +     +    +         +       +            YS       E
Sbjct: 375 GADGAPRIYQMDRPSLGARSLSYAAQAPGQSCIAGGDMPPPSGFAELAQVYSGRVTEAPE 434

Query: 399 SEATHYQLGIAC-------------------AQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           S+      G                       Q+H+NYII+QT DG+VIVDQHAAHERL+
Sbjct: 435 SQNPAMAPGQPLERSETSAPGAEQLPLGAARGQVHENYIIAQTADGMVIVDQHAAHERLV 494

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +EK+++    T + +Q LL PEI++L EG+CA I+   +DL+R G+  E FG  AIA+RE
Sbjct: 495 YEKLKRQMAETGVAAQALLIPEIVELSEGDCARILAVADDLNRFGLGIEAFGGGAIAVRE 554

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            PAIL   N   ++RDI+DE+ D   +  +Q +IE IL+ +AC+GSIRSGR M+  EMN 
Sbjct: 555 TPAILGTVNAEAMVRDILDELDDQGESQLVQAKIEAILSRVACHGSIRSGRWMRGEEMNA 614

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LLREME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 615 LLREMEATPHSGQCNHGRPTYVELKLADIERLFGR 649


>gi|83941709|ref|ZP_00954171.1| DNA mismatch repair protein [Sulfitobacter sp. EE-36]
 gi|83847529|gb|EAP85404.1| DNA mismatch repair protein [Sulfitobacter sp. EE-36]
          Length = 632

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 258/618 (41%), Positives = 380/618 (61%), Gaps = 27/618 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + ++    A GGK+  ++TD+G G
Sbjct: 15  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGARQITVEYADGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + ++++ +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR    + GA+I
Sbjct: 75  IAADDLTLALSRHATSKIDGTDLLNIHTFGFRGEALPSLGAVGRLTICSRVAGQD-GAEI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           +++G     VRP A+N GT+V +RDLFF  PARL FL++++ E   I+D+I+R+A+A P 
Sbjct: 134 SVNGGVTGPVRPAALNGGTVVTLRDLFFATPARLKFLRTDRAEAQAISDIIKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGN----FPERISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R     ++  G+       R++QV+G +F  NA+ ++ +   + L 
Sbjct: 194 VRFTLRDVSGDGPGREVFRAEAEQGDMFAALHGRLAQVLGREFAENALAIDAEREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG+A   Y+F+NGR V+DK ++  +R AY + +   R+P   L ++ DP+ 
Sbjct: 254 GYAALPTYSRGSAVTQYLFVNGRPVRDKLLVGALRGAYFDLLSRDRHPAAALFVDCDPKL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR+P + R  I+ +++ A+   G   S+ ++   + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGLARGLIVSALRHALADAGHRASTTVANATLGAMRPEQPGARV 373

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSD------------------DPTYSEDNDPV 396
                 SL         Q       +                         T + D    
Sbjct: 374 YQMDRPSLGARSAAYQAQAPEPGFAETAGMWGRVETPPQYEAGGADVQTHDTRTHDAHTP 433

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
               A  + LG A  Q+H+NYII+QT  G+VIVDQHAAHERL++EK+++      + +Q 
Sbjct: 434 AAEPAPDFPLGTARGQVHENYIIAQTATGMVIVDQHAAHERLVYEKLKRQMAENGVAAQA 493

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PEI+DL   +CA ++E  EDL R G+  E FG +AIA+RE PAIL   +   ++ DI
Sbjct: 494 LLIPEIVDLSASDCARLLEVAEDLARFGLGIEAFGGSAIAVRETPAILGTVDAKAMVLDI 553

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +DE+ D + + TLQ RIE IL+ +AC+GSIRSGR M+  EMN LLREME  P+S QCNHG
Sbjct: 554 LDELADQNESNTLQARIEAILSRVACHGSIRSGRWMRGEEMNALLREMEATPHSGQCNHG 613

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+++LKLSDIE+LFGR
Sbjct: 614 RPTYVELKLSDIERLFGR 631


>gi|300690568|ref|YP_003751563.1| methyl-directed mismatch repair protein [Ralstonia solanacearum
           PSI07]
 gi|299077628|emb|CBJ50264.1| methyl-directed mismatch repair protein [Ralstonia solanacearum
           PSI07]
          Length = 637

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 199/633 (31%), Positives = 326/633 (51%), Gaps = 47/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 10  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ LTL SR  ++    
Sbjct: 70  GIPADELPVALMRHATSKIGSLEELEAVATLGFRGEALASIASVAELTLTSRTARDAHAT 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     +    +P +   GT V+V+ L+F  PAR  FLK+EQ E     +VIRR A+A 
Sbjct: 130 QI---IAQTGRTQPASGGIGTTVDVQHLYFNTPARRKFLKTEQTELGHCLEVIRRTALAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N    +       + V+G +F    +   E + E+ L G+ G+
Sbjct: 187 PDVAISVHHNGKPLEHWNAAQADART----AAVLGTEFARARLPFEEAAGELRLFGFAGL 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 243 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP+K  +RFR+   +  F+  ++Q+A+ +        L   +  +  Q     T  P   
Sbjct: 303 HPSKIEVRFRDSRAVHQFVYHAVQRALARHAGEQGDSLRTDIADAPDQPGTAATPSPADN 362

Query: 357 --KYATSLTNTQEKLFLQENRLST---------------------------------NDL 381
             ++   +   Q  L + + R                                       
Sbjct: 363 TTRWINQMAARQTSLGIAQPRAEYLAMMRGGNAPLPSSRPAWMADVPSAATLFDGTAAPA 422

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
             +          P  +     + LG A AQ+H  Y+++Q   G+V+VD HAAHER+++E
Sbjct: 423 ADAPVQASIPAAAPPADGSDDEHPLGFAVAQLHGIYVLAQNARGMVLVDMHAAHERILYE 482

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           +++    + ++  Q LL P        E     E  + L  LG       P  +A+R +P
Sbjct: 483 QLKTALEARRVEVQPLLIPVTFAASPVEIGTAEEFRDTLTLLGFDISAVSPTTLAVRAVP 542

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
            +L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN LL
Sbjct: 543 TLLQKADAHALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMNALL 602

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 603 RQMEATERADQCNHGRPTWIQLTVADLDRLFLR 635


>gi|152996647|ref|YP_001341482.1| DNA mismatch repair protein [Marinomonas sp. MWYL1]
 gi|150837571|gb|ABR71547.1| DNA mismatch repair protein MutL [Marinomonas sp. MWYL1]
          Length = 641

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 215/637 (33%), Positives = 354/637 (55%), Gaps = 44/637 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +S+++  +  GG    +I DNG 
Sbjct: 3   RINLLSPRLANQIAAGEVVERPASVVKELLENSLDAGASQLDIDVEQGGVRRIKIRDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKI   DD   + T GFRGEAL SI +VS + L S+        
Sbjct: 63  GIMKDDLSLALSRHATSKIITLDDLEAVRTLGFRGEALASISSVSRMHLTSQAESEVEAW 122

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++   G+ + +++RP +   GT +EVRDLFF  PAR  FL++E+ E   + +V++R+A++
Sbjct: 123 RVEAEGKDMATAIRPASHPQGTTIEVRDLFFNTPARRKFLRTEKTEFAHLEEVVKRLALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
             +  F  S      Y +   +   +   R++ ++G+ FI N++ L+ ++  + L G+ G
Sbjct: 183 RYETGFRLSHNGKQVYDLRPVTDQLHAEHRLATLLGKKFIENSLTLDVEAAGLRLWGWIG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 243 LPTFSRSQADLQYFFVNGRVVKDKLVAHAVRQAYRDVLYNGRHPTFVLYLELDPSTVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+  ++ +F+   I KAI      + S  +    +S ++  +  +++ + 
Sbjct: 303 VHPTKHEVRFRDGRLVHDFLFSRIHKAIADVRPESESAPTGMNDTSSNEPVSYGSNITEQ 362

Query: 359 AT-SLTNTQEKLFLQENRLSTNDLLPSD--------DPTYSEDNDPVEESEATHYQLGIA 409
           +   L+N      +   R ++N L  S+                + V ++E    + G  
Sbjct: 363 SALPLSNRSGSTSMDWMRSTSNSLGSSEVRGQLDGMGRMAGYAQEYVSKTEEIDPETGEI 422

Query: 410 --------------------------------CAQIHQNYIISQTTDGLVIVDQHAAHER 437
                                            AQ+H  YI+S++  GL++VD HAAHER
Sbjct: 423 REIAPASTLGQSENPLVGREDDYQAVPPLGFAVAQLHGVYILSESEQGLILVDMHAAHER 482

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           +++E+M+  F    I+SQ LL P  I + + E  L+ E  E     G + ER G  +  +
Sbjct: 483 IVYERMKAAFYQKNISSQPLLVPINIAVSQSEADLVEESGEVFEAFGFRVERTGLESAMV 542

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           RE+P IL + ++  L+RD+I ++  +  +  ++ R   ++A+MAC+G++R+ RK+   EM
Sbjct: 543 REVPVILIRGDVEGLVRDVISDLSTNGVSDLMESRANELMASMACHGAVRANRKLTIAEM 602

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N LLR+ME    S QCNHGRPT+  L +SD++KLF R
Sbjct: 603 NSLLRDMEMTERSGQCNHGRPTWAHLSMSDLDKLFLR 639


>gi|167648022|ref|YP_001685685.1| DNA mismatch repair protein [Caulobacter sp. K31]
 gi|189030394|sp|B0SWX9|MUTL_CAUSK RecName: Full=DNA mismatch repair protein mutL
 gi|167350452|gb|ABZ73187.1| DNA mismatch repair protein MutL [Caulobacter sp. K31]
          Length = 643

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/642 (37%), Positives = 376/642 (58%), Gaps = 48/642 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L  + +N+IAAGE++ERP+ AIKEL++N++DA ++R+E    GGG +   + D+G
Sbjct: 1   MPIRRLPPETVNRIAAGEVVERPASAIKELVDNAIDAGATRIEVEAHGGGLTRILVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD------DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            G+++EE+P+A++RH TSK++       D   IHT GFRGEALPSIG+V+ L++ SR   
Sbjct: 61  CGLSAEELPVALERHATSKLAPDAQGLWDLLAIHTMGFRGEALPSIGSVARLSISSRAKG 120

Query: 115 NNTGAQIAISGEKISSVRPV--AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
           ++    I + G  +  V P   A + G  +EVRDLF+  PARL F+KSE+ E   IT+ I
Sbjct: 121 SSDAWSILVEGGSVGDVAPAAFAGDHGARIEVRDLFYATPARLKFMKSERAEALAITEEI 180

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +R A+A   V F+         ++            R+S V+G DF +NA+E+++  + +
Sbjct: 181 KRQAMANESVGFSLDIDGRRIIRLPPEHPGPQGRLARLSAVLGRDFQDNAIEIDQTRDGV 240

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L G+ G+PT+NRGNA   Y+F+NGR V+D+ +   +R AYA+ +   R+P   L + +D
Sbjct: 241 RLTGFAGLPTYNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHPTAALYISLD 300

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--- 348
             +VDVNVHPAK+ +RFR+P ++R  I+ +++ A+   G   S+  +   + +       
Sbjct: 301 TSEVDVNVHPAKAEVRFRDPALVRGLIVGALRHALAGAGHRASTTTAASALDAIRAQSMV 360

Query: 349 -------NAPKTHLPKYATSLTNTQE-----------------------------KLFLQ 372
                    P  +    + +  +  +                                ++
Sbjct: 361 PPGAYSGYQPNAYQGGPSPAGFSAWQAGGWTRPSPQVLPGLSDVSARVEPGGYGVAEAVR 420

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
           E      D  P+         DP    +   + LG A AQ+H+ YI++QT DG+VIVDQH
Sbjct: 421 EAAFGEYDAPPNVAYPGGFSEDPAPVFDPVDFPLGAARAQVHETYIVAQTRDGVVIVDQH 480

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHERL++E+M+ +  + ++  Q LL PE+++L   E   ++   E+L  LG+  E FGP
Sbjct: 481 AAHERLVYERMKGEMAAGRVARQALLLPEVVELDPAEAERVVARAEELAALGLVIESFGP 540

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
            A+ +RE PA+L K +   L+RDI D++ ++     L++R+E + +TMAC+GS+R+GR++
Sbjct: 541 GAVLVRETPALLGKTDAAGLVRDIADDLAENGQALALKERLEEVCSTMACHGSVRAGRRL 600

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EMN LLREME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 601 TGAEMNALLREMEATPHSGQCNHGRPTYVELKLADIERLFGR 642


>gi|119502790|ref|ZP_01624875.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2080]
 gi|119461136|gb|EAW42226.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2080]
          Length = 614

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 217/610 (35%), Positives = 336/610 (55%), Gaps = 19/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L+ ++ NQIAAGE++ERP+  IKE IENSLDA +SR++  +  GG    ++ DNG 
Sbjct: 5   RIHRLATRLANQIAAGEVVERPASVIKEAIENSLDAGASRIDIELESGGVQLMRVRDNGQ 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+++E++ +A+ RH TSKI   DD   + T GFRGEAL SI +VS L+L S   +     
Sbjct: 65  GISAEDLILALARHATSKIDSIDDLEAVGTLGFRGEALASIASVSRLSLTSNASEQGAAG 124

Query: 120 QIAISGEKISSVR--PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            IA S  +  +V   P     GT +EVRDLF+  PAR  FL++E+ E   I +V +R A+
Sbjct: 125 MIAQSEGRDMTVSVSPAPHPRGTTLEVRDLFYNTPARRKFLRTEKTELGHIDEVFKRQAL 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F+        + +N          RI+ V G  F+  +V L  ++  ++L G+ 
Sbjct: 185 ARSDVAFSLRHNGKTLHSLNCADDQAGRERRIATVCGAAFMEQSVALAREAGRLSLHGWV 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PTF+R  A+  Y F+NGR ++DK +   I+ AY + +  GR+P  VL LE+DP  VDV
Sbjct: 245 GLPTFSRSQADLQYFFVNGRVIRDKLVTHAIKQAYRDVLFHGRHPAYVLFLEVDPAVVDV 304

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RFR    + +FI  ++ +A+    +      +        Q+    +  P+
Sbjct: 305 NVHPTKHEVRFREGREVHSFIFSTLHRALG--DLRPGDGGAADASGEDAQEGVGWSTTPQ 362

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED-------------NDPVEESEATHY 404
            A     T      Q    +    L +    Y                  P  + E+   
Sbjct: 363 QAPMGLLTPPGGHWQPEAQAGTADLDALSRLYKSPTFNRGGHGTPIMEQSPRGDDESEVP 422

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A AQ+H  +I+++  +GLV+VD HAAHER+ +E+++Q  + + I +Q LL P+ I 
Sbjct: 423 PLGFALAQLHGVFILAENAEGLVLVDMHAAHERITYERLKQMRDDSGIRTQPLLVPQTIT 482

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E A  +E  E L  LG+  +  G   + IRE+P  L    I  L+RD++ +++   
Sbjct: 483 LSSREVAAAVEMSEALIALGLVLDATGDEQLVIREVPIALIGGGIEALVRDVLSDMLAFG 542

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           T+  +    + +L+TMAC+GS+R+ R++   EMN LLR+ME    S QCNHGRPT+++L 
Sbjct: 543 TSDRIAAHEDELLSTMACHGSVRANRRLTVPEMNALLRDMEMTERSGQCNHGRPTWVQLG 602

Query: 585 LSDIEKLFGR 594
           + D++KLF R
Sbjct: 603 MQDLDKLFLR 612


>gi|84684369|ref|ZP_01012270.1| DNA mismatch repair protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84667348|gb|EAQ13817.1| DNA mismatch repair protein [Rhodobacterales bacterium HTCC2654]
          Length = 610

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/601 (43%), Positives = 383/601 (63%), Gaps = 13/601 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA S+R++   A GGK+  ++TD+G G
Sbjct: 13  IRQLDDAAINRIAAGEVVERPASAVKELVENTIDAGSTRIDVAYADGGKTLIRVTDDGCG 72

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + +E++P+A+ RH TSKI   D  +IHTFGFRGEALPS+GAV  LT+ SR       A I
Sbjct: 73  IPAEDLPLAMSRHATSKIDGSDLLDIHTFGFRGEALPSLGAVGRLTITSRCDGA--AASI 130

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G K   VRP A++ GT+VE+RDLFF  PARL FL++++ E   ITDV++R+A+A P 
Sbjct: 131 RVAGGKAEPVRPAALSRGTVVELRDLFFATPARLKFLRTDRAEAQAITDVVKRLAMAEPH 190

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPERISQ----VIGEDFINNAVELNEKSNEITLQ 234
           + FT    S     R        NG+  + +      V+G DF  NAV L+       L 
Sbjct: 191 IGFTLRDVSGGGEGRVTFRAAPENGDLFDALHARLGGVLGRDFAENAVPLDALREGFRLT 250

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+NGR V+DK ++  +R AYA+ +   R+P   L +  DP+ 
Sbjct: 251 GYAALPTYSRGAAVAQFLFVNGRPVRDKLLIGALRGAYADFLSRDRHPAAALFVTCDPKL 310

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHPAKS +RFR P ++R  I+ +I+ A+ + G   SS +++  + +   +    + 
Sbjct: 311 VDVNVHPAKSEVRFREPGLVRGLIVTTIRHALAEAGHRASSTVAQSTLGAMRPEPTHARV 370

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +     + +     +        +       D     E       +E+    LG A AQ+
Sbjct: 371 YQMDRPSQVVLHTAREAQSPMGFAETPSARFDPVIEPEPTPETPPAESL--PLGAARAQV 428

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYI++QT DG+VIVDQHAAHERL++EK+++      + SQ LL PEI+DL EG+ +L+
Sbjct: 429 HENYIVAQTEDGMVIVDQHAAHERLVYEKLKRQMAENGVASQALLIPEIVDLSEGDASLL 488

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           +   +DL RLG+  E FG  AIA+RE PAIL + N   ++RDI+DE+ D   + TLQ RI
Sbjct: 489 LGLADDLARLGLVIEPFGGGAIAVRETPAILGQVNAEAMIRDILDELADLGQSQTLQARI 548

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E +L+ +AC+GSIRSGR M+  EMN LLREME  P+S QCNHGRPT+++LKL+DIE+LFG
Sbjct: 549 EAVLSRVACHGSIRSGRWMRPEEMNALLREMEATPHSGQCNHGRPTYVELKLADIERLFG 608

Query: 594 R 594
           R
Sbjct: 609 R 609


>gi|209886353|ref|YP_002290210.1| DNA mismatch repair protein [Oligotropha carboxidovorans OM5]
 gi|229486325|sp|B6JIV1|MUTL_OLICO RecName: Full=DNA mismatch repair protein mutL
 gi|209874549|gb|ACI94345.1| DNA mismatch repair protein [Oligotropha carboxidovorans OM5]
          Length = 612

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 231/611 (37%), Positives = 366/611 (59%), Gaps = 17/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L E+I+N+IAAGE++ERP+ A+KEL+EN++DA  +R++    GGG+    ITD+G
Sbjct: 1   MPVRQLPEQIVNRIAAGEVVERPASAVKELVENAIDAGGTRIDIFTEGGGRRRIVITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT  ++ +AV+RH TSK+ D D   I T GFRGEALPSI +V+ L + +R        
Sbjct: 61  SGMTQGDLALAVERHATSKLDDEDLLRIRTLGFRGEALPSISSVAKLAITTRHAAEPHAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +     S++ P A+  GT VEV DLF+  PARL FLK+++ E   I +V+RR+A+A 
Sbjct: 121 AVEVDAGAKSAIAPAALQRGTRVEVSDLFYATPARLKFLKTDRTEAEAIREVVRRLAMAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P ++FT +  +                  R+  ++G DF  +A+E+  +   ++++G+  
Sbjct: 181 PDIAFTLAGEERAPVTWAAALPGAPGRLTRLGDILGSDFRTHAIEVGSEREGVSVEGFAA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  R NA   Y+F+NGR V+DK IL  +R AYA+ +P  R+P+V L + +DP++VD N
Sbjct: 241 APSLTRANALGQYLFVNGRPVRDKLILGAVRAAYADYLPRDRHPIVALFVTLDPQEVDAN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS-----------FHQ 347
           VHPAK+ +RFRN  ++R  I+ +++  + ++G  T++  +   I++           F +
Sbjct: 301 VHPAKTEVRFRNAGLVRALIVHALKDGLAREGRRTAANTNGAAITTAFRTEGFSREGFAR 360

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           ++ P+      ++       +   Q   +  ++   +     +   D           LG
Sbjct: 361 ESLPRGGYDWRSSPAAPWPPQAAAQAPAMGFDESAQAAFDAGAPSADTRGNEAPLGDALG 420

Query: 408 IACA----QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                   QIH+NYI++QT DGL++VDQHAAHER+++E+++       +  Q LL PEI+
Sbjct: 421 RPLGAARTQIHENYIVAQTNDGLILVDQHAAHERIVYERLKASLTKNGVARQMLLIPEIV 480

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           ++ E     ++    +L + G+  E FGP A+A+RE PA+L K N   LLRD+ + + + 
Sbjct: 481 EMDEASVEKLLARASELEKYGLSIESFGPGAVAVRETPALLGKANAASLLRDLAEHMAEW 540

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                L+ R+ ++ ATMAC+GS+RSGR ++  EMN LLREME  PNS QCNHGRPT+++L
Sbjct: 541 DEALPLERRLMHVAATMACHGSVRSGRILKVEEMNALLREMEATPNSGQCNHGRPTYVEL 600

Query: 584 KLSDIEKLFGR 594
           KL+DIEKLFGR
Sbjct: 601 KLADIEKLFGR 611


>gi|74317535|ref|YP_315275.1| DNA mismatch repair protein MutL [Thiobacillus denitrificans ATCC
           25259]
 gi|123759071|sp|Q3SIQ5|MUTL_THIDA RecName: Full=DNA mismatch repair protein mutL
 gi|74057030|gb|AAZ97470.1| DNA mismatch repair protein [Thiobacillus denitrificans ATCC 25259]
          Length = 598

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 193/607 (31%), Positives = 330/607 (54%), Gaps = 24/607 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS+ +I+QIAAGE++ERP+ A+KE++ENSLDA ++ ++  +  GG    +++D+G
Sbjct: 1   MSIQVLSDVLISQIAAGEVVERPAAALKEILENSLDAGATAIDVELEQGGVKRIRVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+   D   + + GFRGEAL SI +V+ + L SR   ++  
Sbjct: 61  VGIPRDELALALTRHATSKIATLADLEQVASLGFRGEALASIASVARVRLTSRHAGSDHA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             I + G  +    P A + GT +++ D+FF  PAR  FLK+E  E     + +RR+A+A
Sbjct: 121 WTIHVDGGPLQPSSPAARSGGTTIDIEDMFFNTPARRKFLKTEATEYAHCAETVRRLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+V+FT       + ++  ++       R+  V+GE F  +A+ ++  +  + L G+  
Sbjct: 181 WPQVAFTLVHNGRAQLRLKAEAAAA----RVRHVLGEVFEQHAIAVDAAAGALRLSGWVV 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P     + +  +VF+NGR V+DK I+  +R AY + +     P   L +E+ P  VDVN
Sbjct: 237 RPVAATASRDAQHVFVNGRYVRDKLIVHALREAYRDVLHHQLNPAYCLFVELPPEHVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI-----------STSSVLSKKMISSFHQ 347
           VHPAK+ IRFR+   +  F+  ++++ +                  + +  ++   S   
Sbjct: 297 VHPAKTEIRFRDSRGVHQFLYHAVERLLAAPVAPAAPPSGPDARPPTFLQPRQAAMSLQV 356

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           + A   + P  A +     E   + +   +           ++ D+  V         LG
Sbjct: 357 EEAMAFYAPFAAMAPGEGDEARHVPQASAAGLAGRAGPPRAFASDSSAVPP-------LG 409

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A  Q+H  Y+++Q   GLV+VD HAAHER+++EK++   +   + +Q LL P  +    
Sbjct: 410 YALGQLHGVYVLAQNAHGLVLVDMHAAHERVVYEKLKTALDRRAVPAQALLIPVALTADP 469

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E A I  H + L  +G +     PN++A+R +P++L   +  +L R I+ EI +     
Sbjct: 470 REVAEIAPHLDQLREIGFELSITSPNSVAVRAVPSLLKNADPVELTRAILAEIAEFGVAR 529

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L +R   +LAT+AC+G++R+ R +   EMN LLREME    + QCNHGRPT+ +L+L +
Sbjct: 530 LLAERRNELLATLACHGAVRAHRTLSVPEMNALLREMEATERAGQCNHGRPTWFQLRLDE 589

Query: 588 IEKLFGR 594
           ++ +F R
Sbjct: 590 LDAMFMR 596


>gi|207721715|ref|YP_002252154.1| DNA mismatch repair protein MutL [Ralstonia solanacearum MolK2]
 gi|206586877|emb|CAQ17462.1| dna mismatch repair protein mutl [Ralstonia solanacearum MolK2]
          Length = 644

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 202/636 (31%), Positives = 327/636 (51%), Gaps = 50/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 14  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 73

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR        
Sbjct: 74  GIPVDELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTADAAHAT 133

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++   +P +   GT V+V+ L+F  PAR  FLKSEQ E     +VIRR A+A 
Sbjct: 134 QILAQSGRL---QPASGGVGTTVDVQHLYFNTPARRKFLKSEQTELGHCLEVIRRTALAR 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N          R + V+G +F    +   E + E+ L G+ G+
Sbjct: 191 PDVAISVHHNGKPLEHWNA----AQADTRTAAVLGTEFARARLPFEEAAGELRLFGFAGL 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 247 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  +RFR+   +  F+  ++Q+A+++        L   +  +      P T      
Sbjct: 307 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIAEAADAPGQPGTTATPAP 366

Query: 360 TSLTNTQ--------------------------EKLFLQENRLSTNDLLPSDDPTYSEDN 393
              T                                 L  +R +    +PS    +    
Sbjct: 367 ADNTTRWINQMAARQTSLGIAQPRAEYLAMMRGSSTPLPSSRPAWMADVPSTATLFDGAT 426

Query: 394 DPVEESEATH---------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
              +E+                   + LG A AQ+H  Y+++Q   G+V+VD HAAHER+
Sbjct: 427 ATTDEAPVQAPVPVAAPQTDDADDAHPLGFAIAQLHGIYVLAQNARGMVLVDMHAAHERI 486

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           ++E+++    + ++  Q LL P  +     E     E  + L  LG       P  +A+R
Sbjct: 487 LYEQLKTALEARRVEVQPLLIPVTLAASPVEIGTAEEFRDTLTLLGFDISAVSPTTLAVR 546

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +P +L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN
Sbjct: 547 AVPTLLQKADAQALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMN 606

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LLR+ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 607 ALLRQMEATERADQCNHGRPTWIQLTVADLDRLFLR 642


>gi|83855187|ref|ZP_00948717.1| DNA mismatch repair protein [Sulfitobacter sp. NAS-14.1]
 gi|83843030|gb|EAP82197.1| DNA mismatch repair protein [Sulfitobacter sp. NAS-14.1]
          Length = 635

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 259/621 (41%), Positives = 388/621 (62%), Gaps = 30/621 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+ A+KEL+EN++DA + ++    A GGK+  ++TD+G G
Sbjct: 15  IRQLDDSAINRIAAGEVVERPASAVKELVENAIDAGARQITVEYADGGKTLIRVTDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + ++++ +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR    + GA+I
Sbjct: 75  IAADDLTLALSRHATSKIDGTDLLNIHTFGFRGEALPSLGAVGRLTICSRVAGQD-GAEI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           +++G     VRP A+N GT+V +RDLFF  PARL FL++++ E   I+D+I+R+A+A P 
Sbjct: 134 SVNGGVAGPVRPAALNGGTVVTLRDLFFATPARLKFLRTDRAEAQAISDIIKRLAMAEPF 193

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGN----FPERISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R     ++  G+       R++QV+G +F  NA+ ++ +   + L 
Sbjct: 194 VRFTLRDVSGDGPGREVFRAEAEQGDMFAALHGRLAQVLGREFAENALAIDAEREGLHLT 253

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG+A   Y+F+NGR V+DK ++  +R AY + +   R+P   L ++ DP+ 
Sbjct: 254 GYAALPTYSRGSAVTQYLFVNGRPVRDKLLVGALRGAYFDLLSRDRHPAAALFVDCDPKL 313

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP--- 351
           VDVNVHPAKS +RFR+P + R  I+ +++ A+   G   S+ ++   + +   +      
Sbjct: 314 VDVNVHPAKSEVRFRDPGLARGLIVSALRHALADAGHRASTTVANATLGAMRPEQPGARV 373

Query: 352 ----KTHLPKYATSLTNTQEKLFLQEN-------------RLSTNDLLPSDDPTYSEDND 394
               +  L   + +      +    E                   D+   D  T+   + 
Sbjct: 374 YQMDRPSLGARSAAYQAQAPEPGFAETAGMWGRVETPPQYEAGGADVQTHDTQTHDAHDA 433

Query: 395 PVEESE-ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
               +E A  + LG A AQ+H+NYII+QT  G+VIVDQHAAHERL++EK+++      + 
Sbjct: 434 HTPAAEPAPDFPLGTARAQVHENYIIAQTATGMVIVDQHAAHERLVYEKLKRQMAENGVA 493

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           +Q LL PEI+DL   +CA ++E  +DL R G+  E FG +AIA+RE PAIL   +   ++
Sbjct: 494 AQALLIPEIVDLSASDCARLLEVADDLARFGLGIEPFGGSAIAVRETPAILGTVDAKAMV 553

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            DI+DE+ D + + TLQ RIE IL+ +AC+GSIRSGR M+  EMN LLREME  P+S QC
Sbjct: 554 LDILDELADQNESNTLQARIEAILSRVACHGSIRSGRWMRGEEMNALLREMEATPHSGQC 613

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+++LKLSDIE+LFGR
Sbjct: 614 NHGRPTYVELKLSDIERLFGR 634


>gi|94496337|ref|ZP_01302914.1| DNA mismatch repair protein MutL [Sphingomonas sp. SKA58]
 gi|94424083|gb|EAT09107.1| DNA mismatch repair protein MutL [Sphingomonas sp. SKA58]
          Length = 594

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 223/599 (37%), Positives = 351/599 (58%), Gaps = 11/599 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E ++N+IAAGE++ERP+ A+KE++EN+LDA + R+   ++ GG    ++ D+G
Sbjct: 1   MSIRRLPEHLVNRIAAGEVVERPASALKEIVENALDAGAHRIAVRLSNGGLDRIEVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM S E+ +A++RH TSK+ DD   N+ T GFRGEALPSI +V+ L++ SRP   + G 
Sbjct: 61  CGMDSGEMALALERHATSKLPDDAIENVATLGFRGEALPSIASVARLSIDSRPRGAD-GW 119

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +   ++ +  P A+ PGT + V  LF  +PAR  FL+S + E     + IRR+A+A+
Sbjct: 120 NRTVDNGQLVAEGPAALPPGTRITVEQLFAKVPARRKFLRSPKAEYAACLNCIRRLAMAH 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+          +          ER++ +      +N V ++ +   I L G   +
Sbjct: 180 PAVAFSVEHDGRRVLGVQ---EGEAREERVAALTDRQLADNHVIVSLEREGIRLSGVASL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT NRG  +  Y+F+NGR V+D+ ++  +R AYA+ +   R+PVV L L++   +VDVNV
Sbjct: 237 PTCNRGVGDHQYLFVNGRPVKDRLLIGALRGAYADMLARDRHPVVALFLDVPAHEVDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+P +IR  I+  +++A++ +G           +S++  +  P +  P  A
Sbjct: 297 HPAKTEVRFRDPALIRGMIVSGLRRALDAEGFRAVQHADPAGLSAWRPE--PVSPTPIGA 354

Query: 360 TSLTNTQEKLFLQENRLST----NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
             +     +         T         +  P    +       E   + LG+A  Q+ +
Sbjct: 355 MPIFEAAGQPVSYNPSFQTVADRRASFQAPPPQARAEPAAAPAPEGASFPLGVARGQVAR 414

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+++  DGLVIVDQHAAHERL  E+MR+      + SQ LL PE+++L E  C  +  
Sbjct: 415 TYIVAEAEDGLVIVDQHAAHERLTLERMRRAMEGQGVASQALLLPEVVELDEPACDRLEA 474

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              +L   G++ ERFGP+A+ +R  PA+L + ++  L+ D+ D++    +  +L++R++ 
Sbjct: 475 RAGELREFGLELERFGPSAMLVRAAPAMLGQSDVQGLVTDLADDLAAYDSALSLKERLDL 534

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + ATMAC+GS+R+GR +   EMN LLREME  P S QCNHGRPT++KL   DIEKLFGR
Sbjct: 535 VAATMACHGSVRAGRVLSVAEMNALLREMEVTPRSGQCNHGRPTWVKLGHGDIEKLFGR 593


>gi|299065825|emb|CBJ37004.1| methyl-directed mismatch repair protein [Ralstonia solanacearum
           CMR15]
          Length = 636

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 204/632 (32%), Positives = 331/632 (52%), Gaps = 46/632 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 10  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR  Q+    
Sbjct: 70  GIPVDELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTAQDAHAT 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++   +P +   GT V+V+ L+F  PAR  FLK+EQ E     +VIRR A+A 
Sbjct: 130 QIIAQTGRV---QPASGGVGTTVDVQHLYFNTPARRKFLKTEQTELGHCLEVIRRTALAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N          R + V+G +F    +   E + E+ L G+ G+
Sbjct: 187 PDVAISVHHNGKPLEHWNA----AQADMRTAAVLGTEFARARLPFEEAAGELRLFGFAGL 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 243 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA---PKTHLP 356
           HP+K  +RFR+   +  F+  ++Q+A+++        L   +  +  Q  A   P  +  
Sbjct: 303 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIADAPEQPGATATPADNTT 362

Query: 357 KYATSLTNTQEKLFLQENRL---------STNDLLPSDDPTYSEDND------------- 394
           ++   +   Q  L + + R          ST              +              
Sbjct: 363 RWVNQMAARQTSLGIAQPRAEYLAMMRGGSTPQPPSRPAWMADVPSAATLFDGAADAPAD 422

Query: 395 ------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                       P  +     + LG A AQ+H  Y+++Q   G+V+VD HAAHER+++E+
Sbjct: 423 AAPAQASEPAAAPQADDSDDAHPLGFAVAQLHGIYVLAQNARGMVLVDMHAAHERILYEQ 482

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
           ++    + +I  Q LL P        E     E  + L  LG       P  +A+R +P 
Sbjct: 483 LKTALEAKRIEVQPLLIPVTFAASAVEIGTAEEFCDTLDLLGFDISAVSPTTLAVRAVPT 542

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN LLR
Sbjct: 543 LLQKADAQALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMNGLLR 602

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 603 QMEATERADQCNHGRPTWIQLTVADLDRLFLR 634


>gi|300703174|ref|YP_003744776.1| methyl-directed mismatch repair protein [Ralstonia solanacearum
           CFBP2957]
 gi|299070837|emb|CBJ42138.1| methyl-directed mismatch repair protein [Ralstonia solanacearum
           CFBP2957]
          Length = 644

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 200/636 (31%), Positives = 328/636 (51%), Gaps = 50/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 14  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 73

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR        
Sbjct: 74  GIPVDELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTADAAHAT 133

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++   +P +   GT V+V+ L+F  PAR  FLKSEQ E     +VIRR A+A 
Sbjct: 134 QILAQSGRL---QPASGGVGTTVDVQHLYFNTPARRKFLKSEQTELGHCLEVIRRTALAR 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N          R + V+G +F    +   E + E+ L G+ G+
Sbjct: 191 PDVAISVHHNGKPLEHWNA----AQADTRTAAVLGTEFARARLPFEEAAGELRLFGFAGL 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 247 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT------ 353
           HP+K  +RFR+   +  F+  ++Q+A+++        L   +  +      P T      
Sbjct: 307 HPSKIEVRFRDSRAVHQFVYHAVQRALSRHAGEQGDSLRTDIAEAADAPGQPGTAATPTP 366

Query: 354 --HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE-------------------- 391
             +  ++   +   Q  L + + R     ++                             
Sbjct: 367 ADNTTRWINQMAARQTSLGIAQPRAEYLAMMRGSSTPLPSSRPAWMADVPSAATLFDGAA 426

Query: 392 -------------DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                           P  +     + LG A AQ+H  Y+++Q   G+V+VD HAAHER+
Sbjct: 427 DDADEAPVQAPVPVAAPQTDDADDAHPLGFAIAQLHGIYVLAQNARGMVLVDMHAAHERI 486

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           ++E+++    + ++  Q LL P  +     E     E  + L  LG       P  +A+R
Sbjct: 487 LYEQLKTALEARRVEVQPLLIPVTLAASPVEIGTAEEFRDTLTLLGFDISAVSPTTLAVR 546

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +P +L K +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   EMN
Sbjct: 547 AVPTLLQKADAQALARDVLRDLQAYGGSRVLAERQNELLATLACHSAVRANRRLNLDEMN 606

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LLR+ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 607 ALLRQMEATERADQCNHGRPTWIQLTVADLDRLFLR 642


>gi|294853233|ref|ZP_06793905.1| DNA mismatch repair protein mutL [Brucella sp. NVSL 07-0026]
 gi|294818888|gb|EFG35888.1| DNA mismatch repair protein mutL [Brucella sp. NVSL 07-0026]
          Length = 618

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/616 (43%), Positives = 389/616 (63%), Gaps = 28/616 (4%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           SE IINQIAAGE+IERP+  IKEL+EN++DA ++R+E V AGGGK+  ++TDNG G+ ++
Sbjct: 2   SETIINQIAAGEVIERPASVIKELVENAIDAGATRIEVVTAGGGKTLLRVTDNGSGIPAD 61

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           E+ +AV RHCTSK++DD  +I   GFRGEALPSIG+VS LTL S P   ++G ++ ++G 
Sbjct: 62  ELALAVSRHCTSKLTDDVHDIRALGFRGEALPSIGSVSKLTLKSHPQDADSGFEVCVTGG 121

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
            +   RP A+N GTIVEVRDLF+  PARL F+K+++ E   ITDV++R+ IA+P + F+ 
Sbjct: 122 HLDGPRPTALNRGTIVEVRDLFYATPARLKFMKTDRAEATAITDVVKRIGIAFPHIRFSL 181

Query: 187 STIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
           +      ++M    +      ERI QV+G +F  NA+ ++ + + + L G+ GIP+FNRG
Sbjct: 182 AGTDRTPFEMPATGTGAEATLERIGQVLGREFGENALAIDAERDGVRLAGFVGIPSFNRG 241

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSY 305
           NA   + ++NGR V+DK I   +R AY++ I   R+PV VL L +DP  VDVNVHPAK+ 
Sbjct: 242 NALHQFAYVNGRPVRDKQIFGALRGAYSDVIARDRHPVAVLFLTLDPALVDVNVHPAKAD 301

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKYATSLTN 364
           +RFR+P ++R  I+ +I++A+ + GI  ++  ++ M+ +F  +    +   P+ A S + 
Sbjct: 302 VRFRDPGLVRGLIVGAIKQALAQSGIRPATSGAEAMLQAFRAEGFGAQQSAPRPANSYSP 361

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTY--------------------------SEDNDPVEE 398
              +      R   +                                    +  +     
Sbjct: 362 ASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPALRENGQAVLGDVAVPAADARASVAEAP 421

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E     LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++   ++  I  Q LL
Sbjct: 422 VELMQKPLGAARAQIHENYIVAQTEDSLVIVDQHAAHERLVYEALKNALHARPIAGQMLL 481

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI+DL E +   +  H E L R G+  E+FGP AIA+RE PA+L + N+ QL+RD+ D
Sbjct: 482 IPEIVDLPEEDAQRLAGHAETLARFGLGVEQFGPGAIAVRETPAMLGEMNVQQLIRDLAD 541

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           EI +  T   L+  + ++ ATMAC+GS+RSGR+++  EMN LLR+ME  P S  CNHGRP
Sbjct: 542 EIAEHDTADGLKAMLHHVAATMACHGSVRSGRRLKPEEMNALLRDMEATPGSGTCNHGRP 601

Query: 579 TFIKLKLSDIEKLFGR 594
           T+I+LKL+DIE+LFGR
Sbjct: 602 TYIELKLTDIERLFGR 617


>gi|307941694|ref|ZP_07657049.1| DNA mismatch repair protein MutL [Roseibium sp. TrichSKD4]
 gi|307775302|gb|EFO34508.1| DNA mismatch repair protein MutL [Roseibium sp. TrichSKD4]
          Length = 630

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 258/621 (41%), Positives = 385/621 (61%), Gaps = 28/621 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M++R+L E IIN+IAAGE+IERP+  IKEL+EN++DA +S V+ V A GGK+  +++D+G
Sbjct: 10  MQVRQLGEAIINRIAAGEVIERPASVIKELVENAIDAGASSVDIVTAAGGKTLMRVSDDG 69

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM   ++ +A++RHCTSKISDD   +I T GFRGEALPSIG+V+ L + +R  +     
Sbjct: 70  IGMRRSDLELAIRRHCTSKISDDDLFDIRTLGFRGEALPSIGSVARLAIQTRHSEEENAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G K SS+ P A   GT +EVRDLFF  PARL FLKS++ E   IT+++RR+A+AY
Sbjct: 130 TIKVEGGKESSIIPAARTKGTQIEVRDLFFATPARLKFLKSDRAEAAAITEIVRRIALAY 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F+ S              +     RISQV+G++F++NA+E++     + L G+ G+
Sbjct: 190 PHIGFSLSGSDRQPANWPAARGDEPHLARISQVLGKEFVDNAMEIDAAREGVRLSGFAGL 249

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF+RGNA   + F+NGR V+DK +LS +R AYA+ +   R+ VVVL +++DP  VDVNV
Sbjct: 250 PTFHRGNAQHQFFFVNGRPVKDKLLLSGLRGAYADVLARDRHSVVVLFIDLDPAFVDVNV 309

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-------VLSKKMISSFHQDNAPK 352
           HPAK+ +RFR+  ++R  ++ SI++A+ + G  +S+        + +    +    +   
Sbjct: 310 HPAKADVRFRDGQLVRGLLVGSIKQALVQAGHRSSTSNAAAAMDVIRAQGFAPRAPSGSG 369

Query: 353 THLPKYATSLTNTQ-------------------EKLFLQENRLSTNDLLPSDDPTYSEDN 393
              P Y    +N                     E+      R +    L           
Sbjct: 370 NATPAYQPQRSNAAWSQDAFRPLEPTARGFSDGEQSVFDAPREAGLSGLSMPSADARAHE 429

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             + E E T   LG   AQ+H+ YII+QT DG+VIVDQHAAHERL++EK+++      + 
Sbjct: 430 KQI-EPEKTSLPLGAPRAQVHETYIIAQTDDGVVIVDQHAAHERLVYEKLKESLAKKDVA 488

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL PEI+++ E +   + +H  +L  +G+  E FGP A+A+RE PAIL   NI  ++
Sbjct: 489 RQLLLIPEIVEMPEEDVGRLTDHATELEEVGLVLEAFGPGAVAVRETPAILGDMNIKGMV 548

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            ++ DE+ +  T   L+++++++ ATMAC+GSIR+GR+M+  EM +LLR+ME  P S QC
Sbjct: 549 LNLADELAEWETASGLKEKLDHVAATMACHGSIRAGRRMRVEEMAQLLRDMEATPLSGQC 608

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+++LKL DIEKLFGR
Sbjct: 609 NHGRPTWVELKLDDIEKLFGR 629


>gi|325128499|gb|EGC51377.1| DNA mismatch repair protein MutL [Neisseria meningitidis N1568]
          Length = 658

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 212/658 (32%), Positives = 342/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSEATEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVGNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +      + KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFNRASDYPTGNKPDTRNAFGASGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSPSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++      K+ SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGKLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D+++E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLNELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|218768445|ref|YP_002342957.1| DNA mismatch repair protein [Neisseria meningitidis Z2491]
 gi|20455150|sp|Q9JTS2|MUTL_NEIMA RecName: Full=DNA mismatch repair protein mutL
 gi|121052453|emb|CAM08789.1| DNA mismatch repair protein [Neisseria meningitidis Z2491]
          Length = 658

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 212/658 (32%), Positives = 341/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      +I R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMIERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   ++      K  +     ++ KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFNRASDYPTGNKPDTRNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
                    L       +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPAPKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPITFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +P +L K ++  L RD++ E+    ++ T+++   +I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPTMLGKADVVSLARDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|89056538|ref|YP_511989.1| DNA mismatch repair protein [Jannaschia sp. CCS1]
 gi|88866087|gb|ABD56964.1| DNA mismatch repair protein MutL [Jannaschia sp. CCS1]
          Length = 610

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 254/599 (42%), Positives = 379/599 (63%), Gaps = 12/599 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN++DA++ R+   +A GGK+  ++TD+G G
Sbjct: 16  IRQLDEAAINRIAAGEVVERPASAVKELVENAIDADARRIVIEVAHGGKTLIRVTDDGCG 75

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M + ++P+A+ RH TSKI   D  NIH+FGFRGEALPS+G+V  L++ SR      G  I
Sbjct: 76  MEAADLPLALSRHATSKIDGTDLLNIHSFGFRGEALPSLGSVGRLSITSRASDA--GHMI 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G    +V+P A+N GT+VE+RDLFF  PARL FL++++ E   ITDV++R+A+A P 
Sbjct: 134 RVTGGAHDAVKPAALNRGTLVELRDLFFATPARLKFLRTDRAEMQAITDVVKRLAMAEPA 193

Query: 182 VSFTFSTIKS-NRYKMNFQSTNGNFPERIS----QVIGEDFINNAVELNEKSNEITLQGY 236
           V FT   +    R         G+  + +      ++G DF +NA+ ++ +   + L GY
Sbjct: 194 VGFTLKDVSDGERVTFRVDPEQGDLFDALRGRLTAIMGRDFTDNALAIDAEREGLRLTGY 253

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PT++RG+A   ++F+NGR V+DK ++  +R AY + +   R+P  VL +     +VD
Sbjct: 254 AALPTYSRGSAVAQFLFVNGRPVRDKLLIGALRAAYMDVLSRDRHPAAVLFIGCPSERVD 313

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAKS +RFR P + R+ I+  ++ A+ + G   SS ++   +S+     +     P
Sbjct: 314 VNVHPAKSEVRFREPGVARSLIVTGLRHALAEAGHRASSTVADATLSAMQPAYSEPPSEP 373

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-HYQLGIACAQIHQ 415
             A  +   Q     Q+   +    L    P +S  +  V+E+       LG A AQ+H+
Sbjct: 374 LAAPRIY--QMDRLGQQRGFAPVRGLEEAAPQWSAPSARVDEAVIDSDGPLGAARAQVHE 431

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           NYII+QT  G+V+VDQHAAHERL++E+++       +  Q LL PEI+ L      L+ +
Sbjct: 432 NYIIAQTPGGIVLVDQHAAHERLVYERLKTQMAERGVARQALLIPEILTLGADADRLL-D 490

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           H  +L R G+  E FGP  +A+RE PAIL + N   LLRDI+DE+ D   + TLQ R+E 
Sbjct: 491 HAAELERFGLVIEAFGPGTVAVRETPAILGEINAEALLRDILDELSDLGDSQTLQARVEA 550

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +L+ +AC+GSIRSGR+M++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 551 VLSRVACHGSIRSGRQMRADEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLFGR 609


>gi|297538675|ref|YP_003674444.1| DNA mismatch repair protein MutL [Methylotenera sp. 301]
 gi|297258022|gb|ADI29867.1| DNA mismatch repair protein MutL [Methylotenera sp. 301]
          Length = 622

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 214/621 (34%), Positives = 327/621 (52%), Gaps = 33/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +++I+QIAAGE++ERP+ A+KEL+ENSLDA S+ +   +  GG    ++ DNG G
Sbjct: 4   IHLLPDQLISQIAAGEVVERPASALKELLENSLDAGSTDISVSLVQGGVKQLRVADNGNG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ MA+ RH TSKI+  DD   + + GFRGEAL SI +VS   + SR        +
Sbjct: 64  IAQEDLAMALTRHATSKIASLDDLEAVASLGFRGEALASIASVSRTQISSRALDTKHAWR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           IA +G +IS + P A++ GTI+EV DL+F  PAR  FLK+E  E         R+ ++ P
Sbjct: 124 IASNGSEISPIEPTALDAGTIIEVDDLYFNTPARRKFLKTEGTEFGHCEAAFNRVVLSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F          +           +R  +V+G DF    + + E +  + + G    P
Sbjct: 184 DVAFMLQHNGRALSRY----AVSEPTKRFGEVLGADFAAETIAVEESAAGLRIWGVVAKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TFNR  ++  YV++NGR V+DK I   IR AY + +   R+P  VL LE+DP  VDVNVH
Sbjct: 240 TFNRNKSDTQYVYVNGRFVRDKLISHAIRQAYQDVLHHDRHPAFVLFLELDPNLVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKK-GISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           PAK+ +RFR+   I  FI  S+ KA+    G+S +S  ++   + F   NA         
Sbjct: 300 PAKTEVRFRDGQAIHRFIFHSLHKALASPTGVSNASTANQAAYNPFGGQNANSPSYSASP 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------------DPVE 397
                 Q  L   E       L  ++      +N                      +  E
Sbjct: 360 YPQYQAQINLSANEPNSFYQTLFSANSAQNYSNNALNNTALQTNRDGLAGGAVFTSNASE 419

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
               + + LG A AQIH  Y+++Q   GLV+VD HAAHER+++E+++   ++  +  Q L
Sbjct: 420 NYAESAFPLGFAVAQIHGVYVLAQNAQGLVVVDMHAAHERIMYEQLKNALDNQAVGMQPL 479

Query: 458 LTPEIIDLLEGECALIME----HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           L P   +    E A + E    +D  L +LG       P  +A+R +P +L   +   L 
Sbjct: 480 LLPVSFNADRLEVATVQEALASNDGSLQQLGFDIAIISPTTLAVRAVPTMLQDADAVTLA 539

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           RD++ ++ +   +  L +R   +L TMAC+ ++R+ R +   EMN LLR+ME    S QC
Sbjct: 540 RDVLRDLREYGASRALTERRNELLGTMACHAAVRANRSLTIPEMNALLRDMEATERSGQC 599

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+ ++ +SD++K+F R
Sbjct: 600 NHGRPTWFQVSMSDLDKMFMR 620


>gi|254438381|ref|ZP_05051875.1| DNA mismatch repair protein MutL [Octadecabacter antarcticus 307]
 gi|198253827|gb|EDY78141.1| DNA mismatch repair protein MutL [Octadecabacter antarcticus 307]
          Length = 613

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/600 (44%), Positives = 392/600 (65%), Gaps = 16/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  IN+IAAGE++ERP+  +KELIEN+LDA +SRVE  +A GGK+  ++TDNG G
Sbjct: 21  IRQLDDAAINRIAAGEVVERPASVVKELIENALDARASRVEVFVADGGKTLIRVTDNGVG 80

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT++++P+A+ RH TSKI   D  NIH+FGFRGEALPS+GAV  LT+ SR      G +I
Sbjct: 81  MTAQDLPLALSRHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTIRSRTDGGE-GCEI 139

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           ++SG   ++VRP A+  GTIVE+RDLF+  PARL FL++++ E   I+D ++R+A+A P 
Sbjct: 140 SVSGGAHTAVRPAALTVGTIVELRDLFYATPARLKFLRTDRAEMQAISDAVKRLAMAEPF 199

Query: 182 VSF--TFSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQG 235
           V+F  T  +  ++R         G+  +    R+  V+G+DF  NA+ ++     + L G
Sbjct: 200 VTFVLTDVSGGNSRVTFRANGETGDMFDALHARLRSVLGKDFAENALAIDALREGVHLTG 259

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG+A Q ++++NGR V+DK ++  +R AY +T+   R+P   L +++DP +V
Sbjct: 260 YAALPTYSRGSAVQQFLYVNGRPVRDKVLIGALRGAYMDTLSRDRHPAACLFIDVDPTRV 319

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA-PKTH 354
           DVNVHPAKS +RFR+PTI+R  I+ +++ A+   G   SS ++   + +   +   P+ +
Sbjct: 320 DVNVHPAKSEVRFRDPTIVRGLIVSALRAALADAGHRASSTVASDTLGAMQPEQMEPRIY 379

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                T              R S    + +D     E  +  +   A    LG A AQ+H
Sbjct: 380 QMDRPTGGIGPAY-------RPSGFADIATDMSGRVEVVEANDGPSAQERPLGAARAQLH 432

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYII+QT  G+VIVD HAAHERL++EK++       + +Q LL PEII++  G+ A ++
Sbjct: 433 ENYIIAQTETGIVIVDGHAAHERLVYEKLKTQMAENGVAAQALLIPEIIEMSYGDAAQLL 492

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              +DL R G+  E FG NAIA+RE PAIL + N   +LRDI+DE+ D  ++  +Q+++E
Sbjct: 493 AVADDLSRFGLTIEPFGGNAIAVRETPAILGEVNAEAMLRDILDELSDQGSSTLVQEKLE 552

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIR+GR M+  EMN LLREME+ P S QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 553 AILSRVACHGSIRTGRSMRGEEMNALLREMERTPRSGQCNHGRPTYVELKLSDIERLFGR 612


>gi|325204429|gb|ADY99882.1| DNA mismatch repair protein MutL [Neisseria meningitidis
           M01-240355]
          Length = 658

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 217/658 (32%), Positives = 339/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      +I R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMIERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++ ++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQTASLGIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------------------KGIST 333
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGITPAPMSSEN 358

Query: 334 SSVLSKKMISSFHQDNAP----------KTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
            S       S++   N P          KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASNYPTGNKPDTRNTFGSSGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
                    L       +   +   E+                      G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPTPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++      K+ SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGKLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K +I  L RD++ E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKSDIVSLARDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|237745903|ref|ZP_04576383.1| DNA mismatch repair protein MutL [Oxalobacter formigenes HOxBLS]
 gi|229377254|gb|EEO27345.1| DNA mismatch repair protein MutL [Oxalobacter formigenes HOxBLS]
          Length = 627

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 202/616 (32%), Positives = 337/616 (54%), Gaps = 28/616 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS+ +I+QIAAGE++ERPS  +KEL+EN++DA +++++  +  GG     ++DNG 
Sbjct: 15  TIQLLSDTLISQIAAGEVVERPSAVVKELLENAVDAGATQIDIRLENGGIKRIAVSDNGC 74

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKI+   D  N+ T GFRGEAL SI +V+ +TL SR  +     
Sbjct: 75  GIAPDQLQLALTRHATSKIASLNDLENVSTLGFRGEALASIASVAEVTLQSRTSEQPHAW 134

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI  +    +   P +   GT V+V +L+   PAR  FLKSEQ E     +++RR+A+A 
Sbjct: 135 QIRGNDPSKTL-TPCSGVKGTAVDVHELYANTPARRKFLKSEQTEYGHCAEIVRRIALAR 193

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + FT         +    + +    + + +   +  +   +   E S+ ++L G+ G+
Sbjct: 194 PGIRFTLMHNGKVTAQYQADNLSQRCNQILGEAFSQSLLPVDLAAGEDSDRLSLTGFIGL 253

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +R   +  Y ++NGR V+D+ +   +R AY + +   RYPV +L L+++P +VDVNV
Sbjct: 254 PTASRTRGDMQYFYVNGRFVRDRLLTHAVRAAYEDVLHGNRYPVYLLYLKLEPSRVDVNV 313

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---------------------TSSVLS 338
           HPAK  +RFR+   I  FI  SI + + +                           S  S
Sbjct: 314 HPAKIEVRFRDSRAIHQFIYHSISRILARPMEPEPETTGEERPSSIRSPSPPRGPVSWRS 373

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
               +++  +   +++   +  +L  T+EK  LQ   +   D+     P  +E       
Sbjct: 374 APPPAAYRIEQKTESYGALFRDTLRQTEEKRPLQ---IQNPDIPSGTAPALAETGSQKS- 429

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E   + LG A AQ+H  YI++Q   GLV+VD HAAHER+++EK++   +   + +Q+LL
Sbjct: 430 GEIDDFPLGFALAQLHDIYILAQNRKGLVLVDMHAAHERIVYEKLKTALDEKTLETQSLL 489

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  + + E E    +E+ E L  LG       P  IAIR +P +L + +I   +R ++ 
Sbjct: 490 IPLTLKVGEVEAGTALENRETLLELGFDISALSPETIAIRTVPVLLKQADIATAIRHVLR 549

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++ +  T+   +++   +LAT+AC+ ++R+ R +   EMN LLR+MEK   + QCNHGRP
Sbjct: 550 DLHEYGTSSVTREKRNELLATVACHNAVRANRTLTIPEMNALLRQMEKTERADQCNHGRP 609

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L LS+++ LF R
Sbjct: 610 TWTQLALSELDALFMR 625


>gi|297184247|gb|ADI20365.1| DNA mismatch repair enzyme (predicted ATPase) [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 611

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/600 (43%), Positives = 388/600 (64%), Gaps = 12/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LS+   N+IAAGE++ERPS AIKEL+ENS+DA +SR++   + GGK+  ++ DNG G
Sbjct: 15  IRQLSDAAANRIAAGEVVERPSSAIKELVENSIDAGASRIDISYSDGGKTLIRVKDNGHG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +   ++ +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR    + GA I
Sbjct: 75  IAENQLMLALSRHATSKIDGTDLLNIHTFGFRGEALPSMGAVGRLTITSRIENVSMGATI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G  I  VRP   + GTIVE+R+LF   PARL FL++++ E+  I+DVI+R+A++ P 
Sbjct: 135 TVDGGVIHQVRPAPSSIGTIVELRNLFHATPARLKFLRTDRAESGAISDVIKRLAMSEPF 194

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           + FT    ++    R         G+  +    R+S+++G DF  N+  ++ + + ITL 
Sbjct: 195 IGFTLRDITSGGKGRIIFRADPEAGDLFDAMYGRLSKILGIDFAKNSFRVDAERDGITLT 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG++   Y+F+NGR V+DK +LS +R AY++ +  GRYP+  L +E D  +
Sbjct: 255 GYASLPTYSRGSSVSQYIFVNGRPVKDKSLLSALRAAYSDFLHNGRYPLAALFVECDFER 314

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAK+ +RFR P I+R  +I +++ A+ ++G   SS ++   + +F +       
Sbjct: 315 VDVNVHPAKAEVRFREPGIVRGLVISALRHALAEEGHRASSTVADATLGAFKKSEISNIS 374

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                    + +    +Q N L         +   +        ++    +LG A AQ+H
Sbjct: 375 TNLRMNQSWSRE----MQNNNLDQVGFSELQNNFSARQASIETNNDQISNRLGAARAQVH 430

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYIISQT DG+VIVDQHAAHERL++EK++       ++SQTLL PEII+L E + A++M
Sbjct: 431 ENYIISQTADGIVIVDQHAAHERLVYEKLKNKMALNGVSSQTLLIPEIIELSEQDSAVLM 490

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           +   DL R G+  E FG N+I +RE PAIL + N   L+ DI+DE+ D S +  ++++++
Sbjct: 491 DLSADLSRFGLSIENFGGNSIVVRETPAILGEVNAKSLILDILDELKDWSESNLIKEKLD 550

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIRSGR M+  EMN LLREME  P+S QCNHGRPT++KLKL+DIEKLFGR
Sbjct: 551 AILSRVACHGSIRSGRIMKGEEMNALLREMEITPHSGQCNHGRPTYVKLKLNDIEKLFGR 610


>gi|114769575|ref|ZP_01447185.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255]
 gi|114549280|gb|EAU52162.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255]
 gi|297183941|gb|ADI20062.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
          Length = 611

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/600 (43%), Positives = 388/600 (64%), Gaps = 12/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LS+   N+IAAGE++ERPS AIKEL+ENS+DA +SR++   + GGK+  ++ DNG G
Sbjct: 15  IRQLSDAAANRIAAGEVVERPSSAIKELVENSIDAGASRIDISYSDGGKTLIRVKDNGHG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +   ++ +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR    + GA I
Sbjct: 75  IAENQLMLALSRHATSKIDGTDLLNIHTFGFRGEALPSMGAVGRLTITSRIENVSMGATI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G  I  VRP   + GTIVE+R+LF   PARL FL++++ E+  I+DVI+R+A++ P 
Sbjct: 135 TVDGGVIHQVRPAPSSIGTIVELRNLFHATPARLKFLRTDRAESGAISDVIKRLAMSEPF 194

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
           + FT    ++    R         G+  +    R+S+++G DF  N+  ++ + + +TL 
Sbjct: 195 IGFTLRDITSGGKGRIIFRADPEAGDLFDAMYGRLSKILGIDFAKNSFRVDAERDGMTLT 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG++   Y+F+NGR V+DK +LS +R AY++ +  GRYP+  L +E D  +
Sbjct: 255 GYASLPTYSRGSSVSQYIFVNGRPVKDKSLLSALRAAYSDFLHNGRYPLAALFVECDFER 314

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAK+ +RFR P I+R  +I +++ A+ ++G   SS ++   + +F +       
Sbjct: 315 VDVNVHPAKAEVRFREPGIVRGLVISALRHALAEEGHRASSTVADATLGAFKKSEISNIS 374

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                    + +    +Q N L         +   +        ++    +LG A AQ+H
Sbjct: 375 TNLRMNQSWSRE----MQNNNLDQVGFSELQNNFSARQASIETNNDQISNRLGAARAQVH 430

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYIISQT DG+VIVDQHAAHERL++EK++       ++SQTLL PEII+L E + A++M
Sbjct: 431 ENYIISQTADGIVIVDQHAAHERLVYEKLKNKMALNGVSSQTLLIPEIIELSEQDSAVLM 490

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           +   DL R G+  E FG N+I +RE PAIL + N   L+ DI+DE+ D S +  ++++++
Sbjct: 491 DLSADLSRFGLSIENFGGNSIVVRETPAILGEVNAKSLILDILDELKDWSESNLIKEKLD 550

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIRSGR M+  EMN LLREME  P+S QCNHGRPT++KLKLSDIEKLFGR
Sbjct: 551 AILSRVACHGSIRSGRIMKGEEMNALLREMEITPHSGQCNHGRPTYVKLKLSDIEKLFGR 610


>gi|225075177|ref|ZP_03718376.1| hypothetical protein NEIFLAOT_00177 [Neisseria flavescens
           NRL30031/H210]
 gi|224953352|gb|EEG34561.1| hypothetical protein NEIFLAOT_00177 [Neisseria flavescens
           NRL30031/H210]
          Length = 658

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 216/658 (32%), Positives = 343/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPTQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--------------------------KKGIST 333
           HP K+ IRFR+   +   +  ++ KA+                           +     
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVVSTQMPSEN 358

Query: 334 SSVLSKKMISSFHQDNAP----------KTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
            S       S++   N P          KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASNYPTGNKPDTRNAFGASGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATH---------------YQLGIACAQIHQNY 417
               T            +   +   E+                     LG A AQ+   Y
Sbjct: 419 LYKKTDDIDLELNRLEQARFGNMPSETPTPKTDAPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D+++E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKSDVVSLAKDVLNELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|83748955|ref|ZP_00945964.1| MutL [Ralstonia solanacearum UW551]
 gi|207744182|ref|YP_002260574.1| dna mismatch repair protein mutl [Ralstonia solanacearum IPO1609]
 gi|83724378|gb|EAP71547.1| MutL [Ralstonia solanacearum UW551]
 gi|206595587|emb|CAQ62514.1| dna mismatch repair protein mutl [Ralstonia solanacearum IPO1609]
          Length = 647

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 199/639 (31%), Positives = 326/639 (51%), Gaps = 53/639 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA +++++  +  GG     ITDNG 
Sbjct: 14  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLQIKLEEGGVRRIAITDNGG 73

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI   ++  ++ T GFRGEAL SI +V+ LTL SR        
Sbjct: 74  GIPVDELPVALMRHATSKIGSLEELESVATLGFRGEALASIASVAELTLTSRTADAAHAT 133

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++   +P +   GT V+V+ L+F  PAR  FLKSEQ E     +VIRR A+A 
Sbjct: 134 QILAQSGRL---QPASGGVGTTVDVQHLYFNTPARRKFLKSEQTELGHCLEVIRRTALAR 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N          R + V+G +F    +   E + E+ L G+ G+
Sbjct: 191 PDVAISVHHNGKPLEHWNA----AQADTRTAAVLGTEFARARLPFEEAAGELRLFGFAGL 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  + ++NGR V+D+ +   +R+AY + +   R+P  VL LE+ P  VDVNV
Sbjct: 247 PTASRGRADHQFFYVNGRFVRDRLLTHAVRSAYEDVLHGDRFPAYVLCLELPPEAVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM-----------ISSFHQD 348
           HP+K  +RFR+   +  F+  ++Q+A+ +        L   +                  
Sbjct: 307 HPSKIEVRFRDSRAVHQFVYHAVQRALARHAGEQGDSLRTDIADAADAPDAAGQPGTAAT 366

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE----------------- 391
            AP  +  ++   +   Q  L + + R     ++                          
Sbjct: 367 PAPADNTTRWINQMAARQTSLGIAQPRSEYLAMMRGSSTPLPSSRPAWMADVPSAATLFD 426

Query: 392 ----------------DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                              P  +     + LG A AQ+H  Y+++Q   G+V+VD HAAH
Sbjct: 427 GAAANADEAPVQAPVPMATPQTDDADDAHPLGFAIAQLHGIYVLAQNARGMVLVDMHAAH 486

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+++E+++    + ++  Q LL P  +     E     E  + L  LG       P  +
Sbjct: 487 ERILYEQLKTALEARRVEVQPLLIPVTLAASPVEIGTAEEFRDTLTLLGFDISAVSPTTL 546

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
           A+R +P +L + +   L RD++ ++     +  L +R   +LAT+AC+ ++R+ R++   
Sbjct: 547 AVRAVPTLLQRADAQALARDMLRDLQAYGGSRVLAERQNELLATLACHSAVRANRRLNLD 606

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME    + QCNHGRPT+I+L ++D+++LF R
Sbjct: 607 EMNALLRQMEATERADQCNHGRPTWIQLTVADLDRLFLR 645


>gi|326387365|ref|ZP_08208974.1| DNA mismatch repair protein MutL [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208021|gb|EGD58829.1| DNA mismatch repair protein MutL [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 618

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 221/613 (36%), Positives = 348/613 (56%), Gaps = 24/613 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE++ERP+ A+KEL+EN++DA ++ V   ++ GG S  ++TD+G G
Sbjct: 8   IRRLPEHLVNRIAAGEVVERPASALKELVENAIDAGATHVSVRLSEGGLSLIEVTDDGCG 67

Query: 63  MTSEEIPMAVQRHCTSKISDDF-------SNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           M ++E+ +A++RH TSK+ +           + T GFRGEALPSI +V+ LT+ SR  + 
Sbjct: 68  MRADEMALALERHATSKLPESLIGEESALERVITLGFRGEALPSIASVARLTIESRSRET 127

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
               +  +    +    P A+ PGT V V DLF  +PAR  FL+S + E     DV+RR+
Sbjct: 128 GEAWKRVVDHGDLVGDGPAALPPGTRVRVEDLFGRVPARRKFLRSARSEWAAALDVVRRL 187

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A P + FT         ++           R++Q++  D I+N+V ++    +  L G
Sbjct: 188 AMARPDIGFTLEHDGRRALQVQ---PGERLDMRVAQLVSRDLISNSVAVDLVRGDYHLIG 244

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
             G+PT+NRG A+  Y+F+NGR V+D+ +L  +R AYA+ +   R+ V+ L L +   +V
Sbjct: 245 VAGLPTYNRGVADHQYLFVNGRPVRDRLLLGAVRGAYADMLARDRHAVLALFLTLPAEEV 304

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH------QDN 349
           DVNVHPAK+ +RFR+  ++R  I+  +++A+++    ++       + ++        + 
Sbjct: 305 DVNVHPAKTEVRFRDSALVRGMIVSGLRQALSEGDRRSAQAPDATAMQAWQVEPVAAPEP 364

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY-------SEDNDPVEESEAT 402
                 P  +        +      RL    +                 +       E  
Sbjct: 365 VFSPVPPVQSNLFARPASRPAYVPQRLGEAGVAWRGYEAEVMALPEARAEPATAPVPEGE 424

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT-PE 461
            + LG+A  QI + YI+++  DGLVIVDQHAAHERL+ E++R             L  PE
Sbjct: 425 AHPLGVARGQIGKTYIVAEAADGLVIVDQHAAHERLVLERLRAAGAGEGDAPAQALLLPE 484

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           +++L E +C  + E   +L R G+  ERFGP A+ IR +PA+L K +   L+RD+ D++ 
Sbjct: 485 VVELDEVDCDRLEEAAHELARFGLILERFGPGAVLIRSVPAMLGKGDPQALVRDVADDLA 544

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
            +  T  + +R++ +LATMAC+GS+R+GR +   EMN LLREME+ P S QCNHGRPT++
Sbjct: 545 RNGATLLVGERLDLVLATMACHGSVRAGRVLSVPEMNALLREMEETPRSGQCNHGRPTWV 604

Query: 582 KLKLSDIEKLFGR 594
           KL   DIEKLFGR
Sbjct: 605 KLAHGDIEKLFGR 617


>gi|90419989|ref|ZP_01227898.1| DNA mismatch repair protein MutL [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336030|gb|EAS49778.1| DNA mismatch repair protein MutL [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 621

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 261/621 (42%), Positives = 389/621 (62%), Gaps = 28/621 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LS+ +I+QIAAGE++ERP+  +KEL+EN+LDA + R+E   AGGGK+  +I+D+G
Sbjct: 1   MPIQQLSDALIDQIAAGEVVERPASVVKELVENALDAGARRIEIATAGGGKNLIRISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ + EIP+AV+RHCTSK++     I T GFRGEALPSIG+V  L+L SR   ++   +
Sbjct: 61  CGIPAAEIPLAVRRHCTSKLAGGLDAIGTLGFRGEALPSIGSVGRLSLKSRAAGSDEAYE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +   + S +RP A++ GT++EVRDLF  +PARL FLKS++ E++ IT+++RR+AIA+P
Sbjct: 121 ICVEAGRPSELRPTALSRGTVIEVRDLFHAVPARLKFLKSDRAESSAITEIVRRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S              +   P  I+ V+  DF +NA+ ++    ++ L+G+ GIP
Sbjct: 181 GVRFELSGPDRTTTVFEAVPGDAPLPR-IADVLTPDFADNAIPVDAMREDVRLRGFAGIP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T+NRGN  Q + ++NGR V+DK + S +R AYA+ +   R+PV VL LE+DP  VDVNVH
Sbjct: 240 TYNRGNGQQQFFYVNGRPVRDKTLHSALRGAYADVLARDRHPVAVLFLELDPALVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV----LSKKMISSFHQDNAPKTHLP 356
           PAK+ +RFR+P ++R  I+ S+++A N+ G+ +++     L  +   +   + AP T  P
Sbjct: 300 PAKADVRFRDPGLVRGLIVGSLRQAFNEAGLRSATTNSSGLMARFRGAAPAEPAPVTPAP 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDP-----------------------TYSEDN 393
           +              Q    +        D                           +  
Sbjct: 360 RRFDGFAPGGFAAPRQAAYAAEASPYRPLDMGAGATTLDRGPDAGSPAQAPVAIAAPDTE 419

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
              + +  + + LG A AQ H+N+I+S+T DG+VIVDQHAAHERL++E ++   +   + 
Sbjct: 420 SAEDAANGSDHPLGAAKAQFHRNFIVSETEDGIVIVDQHAAHERLVYEALKTALHGRPLA 479

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LL PEI+DL E +   + E  E   RLG+  ERFGP A+A+RE PAIL   +  +L+
Sbjct: 480 SQLLLIPEIVDLPEDDVDRLAEQAETFARLGLGIERFGPGAVAVRETPAILGSVDCQRLM 539

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           RD+ DE+ ++ T   ++ RI+++ AT+AC+GS+RSGR M+  EMN LLR+ME  P S QC
Sbjct: 540 RDLADELAEAGTADAVRGRIDHVAATIACHGSVRSGRLMKPEEMNALLRDMEATPGSGQC 599

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPTFI+LKL+DIEK+FGR
Sbjct: 600 NHGRPTFIELKLADIEKMFGR 620


>gi|319403683|emb|CBI77268.1| DNA mismatch repair protein MutL [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 612

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 269/612 (43%), Positives = 393/612 (64%), Gaps = 19/612 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KELIEN++DA +SR+E VIA GGKS  +++DNG
Sbjct: 1   MIIRHLSETIINQIAAGEVIERPANVVKELIENAIDAGASRIEIVIANGGKSLIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +++ +A+ RHCTSKI+DD  NI   GFRGEALPSIG+VS L L SR   +++ A+
Sbjct: 61  CGIPEDQLTLAISRHCTSKITDDVHNICFLGFRGEALPSIGSVSKLKLTSRTKNSDSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  KI   +P A NPGTIVEVRDLFF  PARL F+KS++ ET  ITD I+R+AIA+P
Sbjct: 121 IIVNAGKIEGPKPSAANPGTIVEVRDLFFVTPARLKFMKSDRSETITITDTIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ + I     +      N     +RI+Q++G++F  N++ L+ K   + L G+ G+
Sbjct: 181 HIRFSLAGIDRAPMEFPAMEQNTQGQLQRITQIMGKEFAPNSLILDAKRESVHLTGFIGL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DK +   IR AYA+ I   R+ V +L + + P  VDVNV
Sbjct: 241 PSFNRSNSLHQFAYVNGRPVRDKLLWGAIRGAYADVIARDRHAVAILFIHLPPTDVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR+P++IR  II +I++A+++ GI  +S  S+ M+++F  +      + +  
Sbjct: 301 HPAKMDVRFRDPSLIRGLIIGAIREALHQTGIRPTSTGSEAMLAAFRTEPLETAKMHQPF 360

Query: 360 TSLTNTQ-----------------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
           +     +                   +  QE+ +   + L +         + +  SE  
Sbjct: 361 SYDARPRHIDPNLTSIFHKPLDINSSIDFQEDTVPIMEHLSTPSGDTRATINALT-SEEL 419

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
           HY LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++    S  + SQ LL PEI
Sbjct: 420 HYPLGAARAQIHKNYIVAQTQDSLVIVDQHAAHERLVYEALKNALYSKPLPSQLLLIPEI 479

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++L E +   ++ H + L + G+  E FG  AIA+ E P++L + N+  L++D+ DE  +
Sbjct: 480 VELSEEDATCLLSHKDALKKFGLGIESFGIGAIAVHETPSMLGEINVQALIKDLADEAAE 539

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             T   L+  ++ + ATMAC+ SIRSGR +   EMN LLR++E  PNS+ CNHGRPT+I+
Sbjct: 540 YDTIDNLKGMLDYVAATMACHSSIRSGRLLHPEEMNALLRQIEATPNSATCNHGRPTYIE 599

Query: 583 LKLSDIEKLFGR 594
           LKL+DIE+LFGR
Sbjct: 600 LKLADIERLFGR 611


>gi|261380220|ref|ZP_05984793.1| DNA mismatch repair protein MutL [Neisseria subflava NJ9703]
 gi|284797072|gb|EFC52419.1| DNA mismatch repair protein MutL [Neisseria subflava NJ9703]
          Length = 658

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/658 (32%), Positives = 341/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATTIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDSKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNTLTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRF +   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFHDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   +++     K  +      + KT    Y  S    Q  L L+E+R + N    
Sbjct: 359 NSENLFDSASNYPTGNKPDTRNAFGPSGKTAPMPYQASRAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPTYSEDNDPVEESEATHYQL--------------------------GIACAQIHQNY 417
               T   D +  +  +A    +                          G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQACFGNMPSETPTPQTDTPLSDGLPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM+        + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKLQRQENGNLQSQRLLIPVTFAASHEECASLADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++   +I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|121635130|ref|YP_975375.1| DNA mismatch repair protein [Neisseria meningitidis FAM18]
 gi|166232098|sp|A1KUP6|MUTL_NEIMF RecName: Full=DNA mismatch repair protein mutL
 gi|120866836|emb|CAM10594.1| DNA mismatch repair protein [Neisseria meningitidis FAM18]
 gi|325132377|gb|EGC55070.1| DNA mismatch repair protein MutL [Neisseria meningitidis M6190]
 gi|325138442|gb|EGC61008.1| DNA mismatch repair protein MutL [Neisseria meningitidis ES14902]
 gi|325198576|gb|ADY94032.1| DNA mismatch repair protein MutL [Neisseria meningitidis G2136]
          Length = 658

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/658 (32%), Positives = 344/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSEATEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSDNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------ISTSSVLSKKMISSF 345
           HP K+ IRFR+   +   +  ++ KA+                     + V    M S  
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 346 HQDN----------------------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
           + +N                      + KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 NSENLFDRASNYPTGNKSDTHNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSPSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  PA+L K ++  L RD+++E     ++ T+++   +I
Sbjct: 539 AEALAGFGLELSDMGGNTLAVRAAPAMLGKSDVVSLARDVLNEFAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|91775737|ref|YP_545493.1| DNA mismatch repair protein MutL [Methylobacillus flagellatus KT]
 gi|91709724|gb|ABE49652.1| DNA mismatch repair protein MutL [Methylobacillus flagellatus KT]
          Length = 613

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 201/615 (32%), Positives = 329/615 (53%), Gaps = 25/615 (4%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +++I+QIAAGE++ERP+ A+KE++ENSLDA S+ V   +  GG    ++TDN
Sbjct: 1   MPSIKLLPDQLISQIAAGEVVERPASALKEILENSLDAGSTDVAVALQAGGIKQIKVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+ +A+ RH TSKI+  +D   + + GFRGEAL SI A+S   + S  P    
Sbjct: 61  GGGIARDELRLALTRHATSKIASLEDLECVASLGFRGEALASIAAISRTQITSYHPDERH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +IA  G  ++ + P A++ GTIV+++DL+F  PAR  FLK+E  E     +  RR+A+
Sbjct: 121 AWRIASEGSFLTDIEPAALDAGTIVDIQDLYFNTPARRKFLKTENTEFGHCEEAFRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+           ++   S +  F + +    G++F   A  L+E +  + + G  
Sbjct: 181 SCPDVNMLLQHNGRAVARLAAGSADKRFEDIL----GQEFAAEAFYLDEVAAGLRVWGMA 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PTF+R   +  YV++NGR V+DK I   IR AY + +   R+P  VL LE+DP  VDV
Sbjct: 237 AKPTFSRHARDTQYVYVNGRFVRDKLISHAIRQAYQDVLHHDRHPAFVLFLELDPALVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP+K+ +RFR+   +  FI  ++ K++        S++            A     P+
Sbjct: 297 NVHPSKTEVRFRDGQSVHRFIFHALHKSLATPVGLPGSLMPGLATGEKAAAPAQAPSYPR 356

Query: 358 YATSLTNTQEKL--------------FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
           + +++     +                 Q    S +D++ +   + +       + E   
Sbjct: 357 FQSNIDLRASEASGGFYQALFGNLSQVPQRQAESADDVITAQSTSVATAMGEGGQVEVED 416

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           + LG A AQIH  YI++Q   GL++VD HAAHER+++EK++   +++++  Q LL P   
Sbjct: 417 FPLGFAVAQIHGVYILAQNKLGLIVVDMHAAHERIMYEKLKNALDASRVAMQPLLLPVSF 476

Query: 464 DLLEGECALIMEHDED----LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
                E A + E        L +LG       P  +A+R IP +L   +   L RD++ +
Sbjct: 477 QADRLEVATVEEQQALAENGLAQLGFDIAVLSPTTLAVRAIPVMLKDADAVALARDVLAD 536

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           +     +    +R   +L TMAC+ ++R+ R +   EMN LLR+ME    S QCNHGRPT
Sbjct: 537 LRQYGASRAFTERRNALLGTMACHAAVRANRTLTIPEMNALLRDMEATERSGQCNHGRPT 596

Query: 580 FIKLKLSDIEKLFGR 594
           + ++ + +++K+F R
Sbjct: 597 WFQMTMGELDKMFMR 611


>gi|149184476|ref|ZP_01862794.1| DNA mismatch repair enzyme [Erythrobacter sp. SD-21]
 gi|148831796|gb|EDL50229.1| DNA mismatch repair enzyme [Erythrobacter sp. SD-21]
          Length = 600

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/602 (36%), Positives = 352/602 (58%), Gaps = 11/602 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR+L + ++N+IAAGE++ERPS A+KEL+EN++DA +SR+   +  GG +  ++TD+
Sbjct: 1   MPEIRRLPDTLVNRIAAGEVVERPSSALKELVENAIDAGASRIAVKLVEGGLTSLEVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G GM  +E+ +A++RH TSK+ D+    + T GFRGEALPSI +V+  TL SRP     G
Sbjct: 61  GCGMNPDEMALALERHATSKLPDEAIEQVATLGFRGEALPSIASVARFTLESRPRGAEQG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  +   ++ +  P A+ PGT V V +LF  IPAR  FL++ + E     DV++R+A+A
Sbjct: 121 WKRVVDHGELVAEGPAALPPGTRVRVENLFAKIPARRKFLRTPRSEYAACLDVVKRLAMA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V+ T          +           R++QV+  +   N V ++     + L G  G
Sbjct: 181 RPDVAITLDHGDRRILGLQ---GGEGLANRVAQVVARELKENGVAIDLDRGTMRLTGIAG 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT+NRG A+  Y+F+NGR V+D+ +   +R AY++ +   R+ V+ L L + P  VDVN
Sbjct: 238 LPTYNRGIADHQYLFVNGRPVKDRLLTGAVRGAYSDMLARDRHAVLALFLVLPPEMVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFR+   +R FI+  ++ A+      ++       +S + Q+   +   P  
Sbjct: 298 VHPAKTEVRFRDSQAVRGFIVSGLRNALATGDKRSAQTPDASAMSRWQQEPVREEPAPAL 357

Query: 359 AT-----SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            +       +  Q ++          +     +P    +      +    Y LG+A  Q+
Sbjct: 358 RSIFEGRDWSTPQTRVSEAGAAWRGYEAEVMAEPRGRAEEAAPAPAAEQDYPLGVARGQV 417

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGECAL 472
              YI+++  DGLV+VDQHAAHERL+ E+++       +  SQ LL PE+++L E  C  
Sbjct: 418 ANTYIVAEAKDGLVLVDQHAAHERLVLERLKAAGAEEAVARSQALLIPEVVELEETSCDR 477

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E  + L + G+  ERFGP+A+ +R +P  +++ +  +LLRDI D++  +     L ++
Sbjct: 478 LEEAADTLAKHGLAIERFGPSAMLVRSLPHAIARTDPEKLLRDIDDDLALNGEALHLGEK 537

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           ++ +LATMAC+GS+R+GR ++  EMN LLREME+ P S QCNHGRPT++KL + D+EKLF
Sbjct: 538 LDLVLATMACHGSVRAGRTLRVDEMNALLREMERTPRSGQCNHGRPTWVKLSMEDVEKLF 597

Query: 593 GR 594
           GR
Sbjct: 598 GR 599


>gi|189030396|sp|A9KE32|MUTL_COXBN RecName: Full=DNA mismatch repair protein mutL
          Length = 574

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/596 (35%), Positives = 327/596 (54%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 1   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  +I T GFRGEAL SI AVS LTL SR      G
Sbjct: 61  DGIHPEDLVLALERHATSKIAKIDDLQDITTLGFRGEALASISAVSRLTLTSRQKNAEMG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 121 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 181 HFTTEFLLHHNEKEIIHFKSATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK I   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 241 EAAYTRSQPDLQYIYVNGRFVRDKLIAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +     +  L +         N   T L + 
Sbjct: 301 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQAKPGIAHPLPQSTAEYNPITNFAPTPLIEG 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 361 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 396

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 397 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLAMQSLLVPINLSLNPQEITAWQTNKA 456

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI   LA
Sbjct: 457 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAALA 516

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 517 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 572


>gi|126729914|ref|ZP_01745726.1| DNA mismatch repair protein [Sagittula stellata E-37]
 gi|126709294|gb|EBA08348.1| DNA mismatch repair protein [Sagittula stellata E-37]
          Length = 629

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 254/622 (40%), Positives = 385/622 (61%), Gaps = 29/622 (4%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M+  IR+L +  +N+IAAGE++ERP+ A+KEL+EN++DA + RV   IA GGK+  ++TD
Sbjct: 8   MRPVIRQLDDAAVNRIAAGEVVERPASAVKELVENAIDAGARRVGIEIADGGKTLIRVTD 67

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           +G GMT  E+P+A+ RH TSKI   D  +IH+FGFRGEALPS+GAV  L+L SR     +
Sbjct: 68  DGCGMTGAELPLALSRHATSKIDGTDLLDIHSFGFRGEALPSLGAVGRLSLQSRVRG-ES 126

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G ++++ G  +S+V+P A+N GT+V +RDLF+  PARL FL++++ ET  I+D ++R+A+
Sbjct: 127 GVELSVEGGVMSAVKPCALNGGTVVTLRDLFYATPARLKFLRTDRAETQAISDTVKRLAM 186

Query: 178 AYPKVSFTFS--TIKSNRYKMNFQSTNGNFPERIS----QVIGEDFINNAVELNEKSNEI 231
           A P V FT    +   +R     +   G+  + +     +++G +F +NA+ +  +    
Sbjct: 187 AEPAVGFTLRDVSGGGDRVTFRVEPETGDLFDALRGRLTRIMGAEFTDNALAVEAEREGF 246

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L GY  +PT++RG A   Y+F+NGR V+DK ++  +R AY + +   R+P V L ++ D
Sbjct: 247 RLTGYAALPTYSRGTAVAQYLFVNGRPVRDKMLIGALRGAYHDFLSRERHPAVALFVDCD 306

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P +VDVNVHPAKS +RFR+P ++R  I+ +++ A+ + G   SS ++   + +   +  P
Sbjct: 307 PHKVDVNVHPAKSEVRFRDPGVVRGLIVSTLRHALAEAGHRASSTVAAATLGAMRPEAGP 366

Query: 352 KTHLPKY-ATSLTNTQEKLFLQENRLSTNDLL------------------PSDDPTYSED 392
                                Q +R S                        S     +  
Sbjct: 367 AYAPNAPLGAGPEPVSGPRVYQMDRPSLGARAAAYRAQAPAPGFADLGESYSGRVVETAP 426

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                  + T   LG A  Q+H+NYII+QT DG+VIVDQHAAHERL++EK+++      +
Sbjct: 427 VAEAPAEDVTRRPLGAARGQVHENYIIAQTEDGVVIVDQHAAHERLVYEKLKRQMAENGV 486

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL P+++DL   + A ++   +DL R+G+  E FG  AIA+RE PAIL + +   L
Sbjct: 487 PAQALLIPDVVDLSADDAARLLAVADDLSRMGLTVEPFGAGAIAVRETPAILGEVDSQGL 546

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +RDI+DE+ D   T  +Q++IE IL+ +AC+GSIRSGR M++ EMN LLREME  P+S Q
Sbjct: 547 IRDILDELDDMGETSLVQEKIEAILSRVACHGSIRSGRVMRAEEMNALLREMEATPHSGQ 606

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+++LKLSDIE+LFGR
Sbjct: 607 CNHGRPTYVELKLSDIERLFGR 628


>gi|212212503|ref|YP_002303439.1| DNA mismatch repair protein [Coxiella burnetii CbuG_Q212]
 gi|226723030|sp|B6J016|MUTL_COXB2 RecName: Full=DNA mismatch repair protein mutL
 gi|212010913|gb|ACJ18294.1| MutL [Coxiella burnetii CbuG_Q212]
          Length = 575

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/596 (35%), Positives = 328/596 (55%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 2   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  ++ T GFRGEAL SI AVS LTL SR      G
Sbjct: 62  DGIHPEDLVLALERHATSKIAKIDDLQDVTTLGFRGEALASISAVSRLTLTSRQKNAEMG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 122 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 182 HFTTEFLLHHNEKEIIHFKSATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 241

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK I   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 242 EAAYTRSQPDLQYIYVNGRFVRDKLIAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +     +  L +         N   T L + 
Sbjct: 302 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQTKPGIAHPLPQSTAEYNPITNFAPTPLIEG 361

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 362 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 397

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 398 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLVMQSLLVPINLSLNPQEITAWQTNKA 457

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI  +LA
Sbjct: 458 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAVLA 517

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 518 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 573


>gi|261364762|ref|ZP_05977645.1| DNA mismatch repair protein MutL [Neisseria mucosa ATCC 25996]
 gi|288567069|gb|EFC88629.1| DNA mismatch repair protein MutL [Neisseria mucosa ATCC 25996]
          Length = 664

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 218/664 (32%), Positives = 352/664 (53%), Gaps = 75/664 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   +    
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQDGSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQAVSLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------KGISTSSVLSKK 340
           HP K+ IRFR+   +   +  ++ KA+                      GI  ++  S+ 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVGNAGEVLHEITGIRPAATSSEN 358

Query: 341 MISSFHQDNA----------PKTHLPKYATSLTN--------------TQEKLFLQENRL 376
             + F Q+            P TH+ +   S ++               Q  L L+E+R 
Sbjct: 359 EHNQFLQNPTASSETIFAAVPNTHVSEPRNSFSSGKIAPMPYQAARAPQQRSLSLRESRA 418

Query: 377 STNDLLPSDDPTYSEDND-------------------------PVEESEATHYQLGIACA 411
           + N        T +++ D                           ++ +     LG A A
Sbjct: 419 ALNTYAELFKNTAADEADIELAQFEQARFGSTSATSSETPAHTFSDDPKPELPPLGFAIA 478

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGEC 470
           Q+   YI++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        EC
Sbjct: 479 QLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEEC 538

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A + +H + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T++
Sbjct: 539 ATLADHADTLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIE 598

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           +   +ILATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ 
Sbjct: 599 EHENHILATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDA 658

Query: 591 LFGR 594
           LF R
Sbjct: 659 LFLR 662


>gi|329889971|ref|ZP_08268314.1| DNA mismatch repair protein MutL family protein [Brevundimonas
           diminuta ATCC 11568]
 gi|328845272|gb|EGF94836.1| DNA mismatch repair protein MutL family protein [Brevundimonas
           diminuta ATCC 11568]
          Length = 640

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 369/639 (57%), Gaps = 45/639 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L  + +N+IAAGE++ERP+ AIKEL+EN++DA++  +E    GGG +   I D+G
Sbjct: 1   MTIRRLPPETVNRIAAGEVVERPASAIKELVENAIDADARSIEIQADGGGLTRILIADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD------FSNIHTFGFRGEALPSIGAVSHLTLMSR--- 111
            G+  +E+P+A++RH TSK+  D         I T GFRGEALPSIG+V+ L + +R   
Sbjct: 61  KGIPRDELPVAIERHATSKLEPDDAGDVDLLRIFTLGFRGEALPSIGSVARLNITTRARA 120

Query: 112 ----PPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
               P  +     +    ++  S        G  VEVRDLF+  PARL F+KSE+ E   
Sbjct: 121 ETGQPQNDAWAISVEGGAQRPLSPAAFPGPHGARVEVRDLFYATPARLKFMKSERAEAMA 180

Query: 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNE 226
           I++ I+R A+A+  V+FT +       ++      +    +R+  ++G DF  NA+ +++
Sbjct: 181 ISEEIKRQAMAHEAVAFTLTLDGKTTLRLPAEHPGDEGRLKRLGALLGRDFEANALLIDQ 240

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           + + + L GY G+PT++RGNA   ++F+NGR V+D+ +   +R AYA+ +   R+P   L
Sbjct: 241 ERDGVRLSGYAGLPTYSRGNAAHQFLFVNGRPVRDRLLQGALRGAYADFLARDRHPAAAL 300

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            ++IDP  VDVNVHPAK+ +RFR+P ++R  I+ +++ A++  G   S+ ++   +S F 
Sbjct: 301 FIDIDPLYVDVNVHPAKAEVRFRDPALVRGLIVGALRHALHAAGHRASTTVAADALSGFR 360

Query: 347 QDNAPKTHLPKYATSLTNTQEKLF----LQENRLSTNDLLPSDDPTYSEDNDPVEES--- 399
                  + P    + +N            +   +  +L   ++ +   ++    E+   
Sbjct: 361 PHTGDALYNPVAPQTFSNAAPGWSGWQGWSQPAAAAQNLPGLNERSARVEHTWSGEAAVP 420

Query: 400 ------------------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                                   +   Y LG A AQ+H NYI++QT DGLVIVDQHAAH
Sbjct: 421 SFRTLSEIQAEHAGQIAPGASAPVDLIDYPLGAARAQLHANYIVAQTRDGLVIVDQHAAH 480

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ERL++E+M+       +T Q LLTPE+++L   E   +    E+L  +G+  E FG  A+
Sbjct: 481 ERLVYERMKAQMADGAVTRQALLTPEVVELDPAEAERVAAKAEELAEMGLIVEAFGAGAV 540

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +RE PA+L   ++  L+RDI D++ +     +L++R+  +  TMAC+GS+RSGR + + 
Sbjct: 541 LVRETPALLGDTDVQGLIRDIADDLSEHGAALSLKERMAEVCGTMACHGSVRSGRVLSAP 600

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME  P+S QCNHGRPT+++LKL D+EKLFGR
Sbjct: 601 EMNALLRQMEATPHSGQCNHGRPTYVELKLHDLEKLFGR 639


>gi|209363988|ref|YP_001424550.2| DNA mismatch repair protein [Coxiella burnetii Dugway 5J108-111]
 gi|207081921|gb|ABS76590.2| DNA mismatch repair protein [Coxiella burnetii Dugway 5J108-111]
          Length = 575

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/596 (35%), Positives = 327/596 (54%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 2   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  +I T GFRGEAL SI AVS LTL SR      G
Sbjct: 62  DGIHPEDLVLALERHATSKIAKIDDLQDITTLGFRGEALASISAVSRLTLTSRQKNAEMG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 122 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 182 HFTTEFLLHHNEKEIIHFKSATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 241

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK I   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 242 EAAYTRSQPDLQYIYVNGRFVRDKLIAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +     +  L +         N   T L + 
Sbjct: 302 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQAKPGIAHPLPQSTAEYNPITNFAPTPLIEG 361

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 362 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 397

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 398 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLAMQSLLVPINLSLNPQEITAWQTNKA 457

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI   LA
Sbjct: 458 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAALA 517

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 518 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 573


>gi|164685701|ref|ZP_01946749.2| DNA mismatch repair protein MutL [Coxiella burnetii 'MSU Goat
           Q177']
 gi|164601208|gb|EAX32616.2| DNA mismatch repair protein MutL [Coxiella burnetii 'MSU Goat
           Q177']
          Length = 574

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/596 (35%), Positives = 327/596 (54%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 1   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  +I T GFRGEAL SI AVS LTL SR      G
Sbjct: 61  DGIHPEDLVLALERHATSKIAKIDDLQDITTLGFRGEALSSISAVSRLTLTSRQKNAEMG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 121 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 181 HFTTEFLLHHNEKEIIHFKPATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK I   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 241 EAAYTRSQPDLQYIYVNGRFVRDKLIAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +     +  L +         N   T L + 
Sbjct: 301 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQAKPGIAHPLPQSTAEYNPITNFAPTPLIEG 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 361 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 396

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 397 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLAMQSLLVPINLSLNPQEITAWQTNKA 456

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI   LA
Sbjct: 457 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAALA 516

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 517 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 572


>gi|328545053|ref|YP_004305162.1| DNA mismatch repair protein mutL [polymorphum gilvum SL003B-26A1]
 gi|326414796|gb|ADZ71859.1| DNA mismatch repair protein mutL [Polymorphum gilvum SL003B-26A1]
          Length = 606

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 254/605 (41%), Positives = 382/605 (63%), Gaps = 20/605 (3%)

Query: 8   EKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE 67
           E +IN+IAAGE+IERP+  +KEL+EN++DA +  VE V A GGK+  +++D+G GMT+ +
Sbjct: 3   EAVINRIAAGEVIERPASVVKELVENAVDAGAGMVEIVTAAGGKTLLRVSDDGSGMTAAD 62

Query: 68  IPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           + +AV+RHCTSKI+D D  +I T GFRGEALPSIGAV  L++++R        +IA+ G 
Sbjct: 63  LALAVRRHCTSKIADEDLFDIRTLGFRGEALPSIGAVGRLSIVTRHVDEPHAWRIAVEGG 122

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           + + + P A + GT VEVRDLFF  PARL FLKS++ E   IT+V+RR+A+AYP + F+ 
Sbjct: 123 RETPLGPAARHRGTQVEVRDLFFATPARLKFLKSDRAEAAAITEVVRRIALAYPHIGFSL 182

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
           S                    RI+Q++G DF++NA+EL+ +   + L G+ G+PTF+RG 
Sbjct: 183 SGADRQAQSWPPARDADPRLARIAQILGRDFVDNALELDAEREGVRLTGFAGLPTFHRGT 242

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
           A Q + ++NGR V+DK +LS +R AYA+ +   R+PV VL LE+DP  VDVNVHPAK+ +
Sbjct: 243 AQQQFFYVNGRPVKDKLLLSALRGAYADVLARDRHPVAVLFLELDPAHVDVNVHPAKADV 302

Query: 307 RFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS----------------SFHQDNA 350
           RFR+  ++R  ++ +I++A+   G   S+  +   +                  +    +
Sbjct: 303 RFRDGQLVRGLLVGAIRQALVTAGHRASTANAAAAMDAIRAGGFGGCAAAAEAPYRSPAS 362

Query: 351 PKTHLPKYATSL-TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                    ++         F +  +    D+LP      +       + EA    LG A
Sbjct: 363 GAAGWDWRRSAFRPGPAPAGFSEPMQAGLGDVLPLSADARA--GAVPVDEEALRRPLGAA 420

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            AQ+H  YII+QT DGLVIVDQHAAHERL++E++++   +  +  Q LL PEI++L E +
Sbjct: 421 RAQVHGTYIIAQTEDGLVIVDQHAAHERLVYERLKEALAARAVARQMLLIPEIVELPEED 480

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
              + E   +L  +G+  E FGP A+A+RE PA+L + +I  L+RD+ DE+ +  T   L
Sbjct: 481 VGRLAERAAELESVGLVLEPFGPGAVAVRETPALLGEIDIRGLVRDLADELAEWDTATGL 540

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           ++R++++ ATMAC+GS+R+GR++++ EM+ LLR+ME  P S QCNHGRPT+I+LKL DIE
Sbjct: 541 KERLDHVAATMACHGSVRAGRRLRAEEMDALLRDMEATPLSGQCNHGRPTWIELKLGDIE 600

Query: 590 KLFGR 594
           +LFGR
Sbjct: 601 RLFGR 605


>gi|309379702|emb|CBX21691.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 658

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/658 (32%), Positives = 343/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQKDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+       N  ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPA----QNLHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------------------KGIST 333
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVGNAGEVLHDITGVTPAPMPSEN 358

Query: 334 SSVLSKKMISSFHQDNAP----------KTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
            S       S++   N P          KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASNYPTGNKPDTRNAFGASGKTAPMPYQAAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM RQ   + ++ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRRENGRLQSQRLLIPSTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D+++E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLNELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|304387173|ref|ZP_07369416.1| DNA mismatch repair protein MutL [Neisseria meningitidis ATCC
           13091]
 gi|304338740|gb|EFM04851.1| DNA mismatch repair protein MutL [Neisseria meningitidis ATCC
           13091]
          Length = 658

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 214/658 (32%), Positives = 339/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQKDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVGNAGEVLHEITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +      + KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFNRASDYPTGNKPDTRNAFGASGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  PA+L K ++  L RD++ E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPAMLGKSDVVSLARDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|161830565|ref|YP_001596643.1| DNA mismatch repair protein [Coxiella burnetii RSA 331]
 gi|81839061|sp|Q83CM9|MUTL_COXBU RecName: Full=DNA mismatch repair protein mutL
 gi|189030397|sp|A9NCK3|MUTL_COXBR RecName: Full=DNA mismatch repair protein mutL
 gi|161762432|gb|ABX78074.1| DNA mismatch repair protein MutL [Coxiella burnetii RSA 331]
          Length = 574

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/596 (35%), Positives = 326/596 (54%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 1   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  +I T GFRGEAL SI AVS LTL SR      G
Sbjct: 61  DGIHPEDLVLALERHATSKIAKIDDLQDITTLGFRGEALASISAVSRLTLTSRQKNAEMG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 121 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 181 HFTTEFLLHHNEKEIIHFKSATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK +   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 241 EAAYTRSQPDLQYIYVNGRFVRDKLVAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +        L +         N   T L + 
Sbjct: 301 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQAKPGIVHPLPQSTAEYNPITNFAPTPLIEG 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 361 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 396

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 397 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLAMQSLLVPINLSLNPQEITAWQTNKA 456

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI   LA
Sbjct: 457 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAALA 516

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 517 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 572


>gi|261377459|ref|ZP_05982032.1| DNA mismatch repair protein MutL [Neisseria cinerea ATCC 14685]
 gi|269146187|gb|EEZ72605.1| DNA mismatch repair protein MutL [Neisseria cinerea ATCC 14685]
          Length = 658

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/658 (32%), Positives = 347/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELVGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMSSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN---- 379
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DNENLFDSASNYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMNTYAE 418

Query: 380 --------DLLPSDDPTYSEDNDPVE--------------ESEATHYQLGIACAQIHQNY 417
                   DL  S        N P E               S++    LG A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQVRFGNMPSEMLIPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++      K+ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGKLQSQRLLIPVTFAASHEECAALSDH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++   +I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|313668557|ref|YP_004048841.1| DNA mismatch repair protein [Neisseria lactamica ST-640]
 gi|313006019|emb|CBN87478.1| DNA mismatch repair protein [Neisseria lactamica 020-06]
          Length = 658

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 340/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATEIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   +    
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+       N  ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPA----QNLHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDRASDYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQRSLSLRESRTAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTGDIDLELSRLEQARFGNMPSETPAPKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM RQ   + ++ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRRENGRLQSQRLLIPSTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  PA+L K ++  L RD++ E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPAMLGKSDVVSLARDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|315500444|ref|YP_004089247.1| DNA mismatch repair protein mutl [Asticcacaulis excentricus CB 48]
 gi|315418456|gb|ADU15096.1| DNA mismatch repair protein MutL [Asticcacaulis excentricus CB 48]
          Length = 643

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/639 (36%), Positives = 374/639 (58%), Gaps = 47/639 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L +  IN+IAAGE++ERP+ AIKEL+EN++DA +++++     GG S   I DNG G
Sbjct: 4   ISRLPQDTINRIAAGEVVERPASAIKELVENAIDAGATQIDIFAEMGGLSRILIEDNGRG 63

Query: 63  MTSEEIPMAVQRHCTSKISD------DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           M ++++P+AV+RH TSK+        D  +I T GFRGEALPS+G+V+ L + SR    +
Sbjct: 64  MDADDLPLAVERHATSKLKPQADGTWDLLHIQTLGFRGEALPSMGSVARLDITSRAKGMD 123

Query: 117 TGAQIAISGEKISSVRPV--AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
               I +    +S +RP   +   GT VE++DLF+  PARL F+K+++ E   I++ ++R
Sbjct: 124 GAIAITVDAGAMSPLRPAAFSRPHGTRVELKDLFYATPARLKFMKTDRAENMAISEEVKR 183

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
            A+A+  V F+ +       ++  + +      +R++ ++G+DF +NA+ ++++   + L
Sbjct: 184 QAMAHEHVGFSLTLDGKRSLRLYPEEAGFEGRLKRLAALLGDDFGHNALLIDQQREGVRL 243

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY G+PTF+RGNA   Y+F+NGR V+DK +   +R AYA+ +   R+P+ VL +E DP+
Sbjct: 244 TGYAGLPTFSRGNAQHQYLFVNGRPVRDKLLTGALRGAYADFLARDRHPMAVLYVETDPQ 303

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH------- 346
            +DVNVHPAK+ +RFR+P ++R  I+ +++ A+   G   ++ ++ + +S+F        
Sbjct: 304 NIDVNVHPAKAEVRFRDPNLVRGLIVGALKHALASAGHRAATTVADQALSAFSPLSSGYR 363

Query: 347 ------------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                             Q  A  T    +          L    +     D + +    
Sbjct: 364 APVQPTLSLHSSALGAGYQPRAYATPQQPHPNYQPAWNADLTFAPSARVERDFVAAAPML 423

Query: 389 YSEDNDPVEE-------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
            +  +  + E              E   Y LG A AQ+H+ YI++QT DGL+IVDQHAAH
Sbjct: 424 QTPGDSGLAEAGGDLRTLSQPLPPEFESYPLGAARAQLHETYILAQTKDGLIIVDQHAAH 483

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ERL++E+M+       +  QTLL PEI+DL   + + +M   +DL   G+  E FGP  I
Sbjct: 484 ERLVYERMKAMMAEGNVARQTLLIPEIVDLDPADVSRLMARRDDLEGFGLMIESFGPATI 543

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +RE+PA++   ++  L+RD+ D+I ++     L++R+  I   MAC  S+R+GR++ + 
Sbjct: 544 LVREVPALIGDGDVAGLIRDLADDIAENGQALILKERMAEICGNMACRNSVRAGRRLSAS 603

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME  P+S QCNHGRPT+++LKL DIEKLFGR
Sbjct: 604 EMNALLRQMEATPHSGQCNHGRPTYVELKLKDIEKLFGR 642


>gi|212218528|ref|YP_002305315.1| DNA mismatch repair protein [Coxiella burnetii CbuK_Q154]
 gi|212012790|gb|ACJ20170.1| DNA mismatch repair protein [Coxiella burnetii CbuK_Q154]
          Length = 575

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 213/596 (35%), Positives = 327/596 (54%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 2   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  +I T GFRGEAL SI AVS LTL SR      G
Sbjct: 62  DGIHPEDLVLALERHATSKIAKIDDLQDITTLGFRGEALSSISAVSRLTLTSRQKNAEMG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 122 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 182 HFTTEFLLHHNEKEIIHFKPATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 241

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK I   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 242 EAAYTRSQPDLQYIYVNGRFVRDKLIAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +     +  L +         N   T L + 
Sbjct: 302 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQAKPGIAHPLPQSTAEYNPITNFAPTPLIEG 361

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 362 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 397

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 398 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLAMQSLLVPINLSLNPQEITAWQTNKA 457

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI   LA
Sbjct: 458 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAALA 517

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 518 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 573


>gi|302389748|ref|YP_003825569.1| DNA mismatch repair protein MutL [Thermosediminibacter oceani DSM
           16646]
 gi|302200376|gb|ADL07946.1| DNA mismatch repair protein MutL [Thermosediminibacter oceani DSM
           16646]
          Length = 593

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 198/600 (33%), Positives = 319/600 (53%), Gaps = 19/600 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E I ++IAAGEIIE+P   +KEL+ENS+DA S  +   I  GGKS  ++ D+G 
Sbjct: 3   KIKVLDENISSKIAAGEIIEKPVSVVKELVENSIDAGSRHIFVEIEKGGKSLIKVIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++ +A +RH TSKIS  DD  NI T GFRGEALPSI AVS LT++++   +  G 
Sbjct: 63  GMDPEDVRLAFERHATSKISSLDDIFNIKTLGFRGEALPSIAAVSLLTVLTKTHGSVVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  ++G  I      A+  G  V VR++FF  PARL FL+S+  E +L+ D++ R AI +
Sbjct: 123 KCVLNGGVIEKFEEAAVAEGCCVIVRNIFFNTPARLKFLQSDSREASLVVDLVTRYAIGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF  S       ++ +   NGN  E I+++ G +   + + +N+  +   + G+   
Sbjct: 183 PDISFRLSVDGK---EVLYTPGNGNLKEVIARIYGFNLAKDLIHINKTFDFGRIDGFISP 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P + RGN +    F+NGR V+D+ + +++  AY   +P  ++P+  + + ID   VDVNV
Sbjct: 240 PKYTRGNRSWETFFVNGRLVKDRGLSASLEKAYRTLLPGDKFPIAFIKISIDGSLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  IRF+    +   + +++++ +    +     L         +   PK      A
Sbjct: 300 HPAKIEIRFQRENEVHQALYETVKEGLFSNTLVPKEDL------PIPKTTFPKPKNYDGA 353

Query: 360 TSLTNTQEKLFLQ-----ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
            +    +E+ F +     EN+    +     +       +  EE +A          Q+ 
Sbjct: 354 VNENFLKEEYFTRTSGKIENKPVFTETAVPSETKKHSAPNIKEEKKAPEIYFSRILGQLF 413

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + YI+ Q      +VDQHAAHER+++E      +   + SQ L++P I+ L   E   I 
Sbjct: 414 ETYIVVQGNGEFYLVDQHAAHERILYEYYSCGMDL-PVISQELVSPFILKLTFEEINFIE 472

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E+ + + R+G   E FG + + IR +P   +K   P  L++I+DE+ ++          E
Sbjct: 473 ENRDFIKRMGFDIEVFGKDTVLIRSVPYFFNKPVEPASLQEIMDELKENGEFRLRS--RE 530

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ILA+MAC+ +I++G  +   EM  LL ++ +  N   C HGRPT I + L ++EK F R
Sbjct: 531 KILASMACHTAIKAGDTLSPDEMRELLDQLMRTQNPYTCPHGRPTMISISLYELEKKFRR 590


>gi|215919100|ref|NP_820082.2| DNA mismatch repair protein [Coxiella burnetii RSA 493]
 gi|206583985|gb|AAO90596.2| DNA mismatch repair protein [Coxiella burnetii RSA 493]
          Length = 575

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 212/596 (35%), Positives = 326/596 (54%), Gaps = 26/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+++  NQIAAGE++ERP+  +KELIENS+DA +S +   I  GG    +I D+G
Sbjct: 2   MYIRRLNDQTANQIAAGEVVERPASVVKELIENSIDAHASCIRVDILQGGAKQIRIQDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A++RH TSKI+  DD  +I T GFRGEAL SI AVS LTL SR      G
Sbjct: 62  DGIHPEDLVLALERHATSKIAKIDDLQDITTLGFRGEALASISAVSRLTLTSRQKNAEMG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+    KI +  P A   GT ++V+DLF+  PAR  FL+S   E   I  +I R+A++
Sbjct: 122 YRISNISHKIMTPVPAAHPQGTTIDVQDLFYNTPARRKFLRSPATEFQHIRRIIERLALS 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +    F     +         +T      RI  ++G+ F+ +A+ +    + +TL+GY  
Sbjct: 182 HFTTEFLLHHNEKEIIHFKSATTISGQENRIKSILGDVFMQSALAIEFSQSGLTLKGYIA 241

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + R   +  Y+++NGR V+DK +   +R AY + +  GR+P  VL LEIDP  VD+N
Sbjct: 242 EAAYTRSQPDLQYIYVNGRFVRDKLVAQALRQAYHDVLFHGRHPAYVLYLEIDPAFVDIN 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR+P  +R+F+I +++ A+ +        L +         N   T L + 
Sbjct: 302 VHPTKHEVRFRDPQWVRDFLIHAVKTALAQAKPGIVHPLPQSTAEYNPITNFAPTPLIEG 361

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L+  QE+       +                           + LG A AQ+   YI
Sbjct: 362 QGNLSLIQEQPAPYTQTI------------------------VHKHPLGHALAQLQGIYI 397

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +SQ   GLVIVD HAAHER+++EKM++      +  Q+LL P  + L   E      +  
Sbjct: 398 LSQNEKGLVIVDMHAAHERILYEKMKKQLAEVGLAMQSLLVPINLSLNPQEITAWQTNKA 457

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              RLG + E FGP+ I +R  P++L  KN+  L+RD++ ++I  +TT  + +RI   LA
Sbjct: 458 LFARLGFEIESFGPDKIVVRRHPSLLKPKNLENLIRDVLADLITHNTTSRVGERINAALA 517

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ ++R+   +   EM  LLREMEK  +   CNHGRPT+ +  +++++  F R
Sbjct: 518 TLACHAALRAPHYLTIEEMEALLREMEKTEHGGLCNHGRPTWKQFDIAELDTFFLR 573


>gi|220927109|ref|YP_002502411.1| DNA mismatch repair protein MutL [Methylobacterium nodulans ORS
           2060]
 gi|219951716|gb|ACL62108.1| DNA mismatch repair protein MutL [Methylobacterium nodulans ORS
           2060]
          Length = 621

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/610 (38%), Positives = 369/610 (60%), Gaps = 20/610 (3%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA ++ +E  I  GG+   ++ D+G GM
Sbjct: 12  RRLDPVLVDRIAAGEVVERPAAAVKELVENAIDAGATSIEVTIQAGGRRLIRVLDDGIGM 71

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
             E++ +AV+RH TSK+ + D   I T GFRGEALPSIGAV+ L+L+SR  +  +G  + 
Sbjct: 72  GPEDLALAVERHATSKLPEGDLDRIDTLGFRGEALPSIGAVARLSLVSRTAEAESGHGLV 131

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRPVA   GT VEV DLF   PARL FLKS++ E   + +++RR+A+A+P++
Sbjct: 132 VDAGIKGPVRPVAAERGTRVEVTDLFAATPARLKFLKSDRAEAGAVAEILRRLAVAHPQI 191

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
            FT             ++  G++  R++ V+G DF  N+V ++ +     L G+ G+PTF
Sbjct: 192 RFTLRGEGGAGLTFPAETGQGSWLRRLAAVLGADFAANSVPVSLEREGFALDGHIGLPTF 251

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R  A   +  +NGR V+D+ +L  +R AYA+ +   R+PV+ L L  DP +VDVNVHPA
Sbjct: 252 HRAAATHMHFVVNGRPVRDRLLLGAVRGAYADVMASDRHPVLALALTCDPTEVDVNVHPA 311

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN--------APKTH 354
           K+ +RFR P ++R  I+ +I +A+ ++G   S  ++ K + S                  
Sbjct: 312 KTEVRFREPGLVRGLIVSAIHEALRREGGRASGSVAAKTLESLRPAQGPLLPLRRPDPPP 371

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDD----------PTYSEDNDPVEESEATHY 404
                +    +  + FL     +      +D+          P  ++  +P  E  +  +
Sbjct: 372 AAPRGSGRVESFAQDFLGAPEAAEQPAGFADEAQAAFAGAAMPPGADWREPAPEPASPTH 431

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A AQ+H+ YI++QT DG+VIVDQHAAHERL++E+++++  +  I  Q LL P++++
Sbjct: 432 PLGAARAQLHETYIVAQTQDGIVIVDQHAAHERLVYERLKRERAAGGIARQLLLIPDVVE 491

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   + E   DL  LG+  E FG  A+ +RE+PA L+  ++  LL D++D + +  
Sbjct: 492 LDPAEADRLAEAAGDLEALGLVLEAFGHGAVLVREVPAALAGGSVRALLADVVDVLQE-G 550

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L  R++ +L+ M+C+GSIR+GR+++  EMN LLREME  P S QCNHGRPT+++LK
Sbjct: 551 GADPLARRLDAVLSRMSCHGSIRAGRRLRPEEMNALLREMEATPLSGQCNHGRPTYVELK 610

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 611 LHDIERLFGR 620


>gi|294496663|ref|YP_003543156.1| DNA mismatch repair protein MutL [Methanohalophilus mahii DSM 5219]
 gi|292667662|gb|ADE37511.1| DNA mismatch repair protein MutL [Methanohalophilus mahii DSM 5219]
          Length = 597

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 198/596 (33%), Positives = 304/596 (51%), Gaps = 12/596 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E  INQIAAGE+IERP+  +KELI+NSLDA +S +   I G G     + D+G G
Sbjct: 7   IHLLDEATINQIAAGEVIERPASVVKELIDNSLDAGASDIRVEIEGAGSKSITVIDDGSG 66

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EE P+A  +H TSKI   DD   I T GFRGEAL SI AVS + L+SR     +  +
Sbjct: 67  IGREEAPLAFTKHSTSKIESKDDLHRIITLGFRGEALSSIAAVSRVELISRTADCLSAVR 126

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G  +        + GT VEV+DLF+  PAR  +LKS++ E + ITD + R A+  P
Sbjct: 127 IGVEGGLVGEATETGSSVGTRVEVQDLFYNTPARRKYLKSKRTELSHITDTVTRQALGNP 186

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+FT         +       G   +R+ QV+G D     + L  K + ++L GY   P
Sbjct: 187 GVAFTLLNEGKVVLR----CGKGELFDRMVQVLGADVARQLIPLEYKDDLLSLWGYISKP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + R N    Y F+NGR +    I + +R  Y   +P GRYP  VL + I+  +VDVNVH
Sbjct: 243 GYYRSNREMNYFFVNGRNISSPAISNAVRLGYYTMLPKGRYPAAVLNVRINLEEVDVNVH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQDNAPKTHLPKY 358
           PAK Y+R      I + I  ++++A+ ++ +        +  M SS      P +  P  
Sbjct: 303 PAKRYVRLSRENEIMDGITAAVEQALKQEKLVPEVKPSRTTTMQSSLASPEKPNSKEPIS 362

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           + S    +           T   L S +  ++E+     E   +         Q++  YI
Sbjct: 363 SESPVIRENTPNYSAPPRDTQRRLKSSERAFAEEKAH-PERVGSGVSDARILGQVNDLYI 421

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++T +GL+++DQHAAHER+++E++ +     K   Q L++P  +DL   E  L+ E+  
Sbjct: 422 VAETDEGLLLIDQHAAHERIMYEQLSRR---VKHDWQELISPVTVDLTTREKVLLEEYIP 478

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG     FG     I  +P ++ K   P ++ D++ ++ +       +   + +  
Sbjct: 479 YLENLGFSLSEFGTQTYVITTVPTVMGKIEDPSVVHDLLADLFEQGRVKEKKGMEDMLCK 538

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC  +I++G      +M  LL ++EK  N   C HGRPT I L  ++++KLF R
Sbjct: 539 TMACRSAIKAGAPCNMEQMQNLLDQLEKTENPYTCPHGRPTMITLGKAELDKLFKR 594


>gi|161870311|ref|YP_001599481.1| DNA mismatch repair protein [Neisseria meningitidis 053442]
 gi|189030402|sp|A9M0G1|MUTL_NEIM0 RecName: Full=DNA mismatch repair protein mutL
 gi|161595864|gb|ABX73524.1| DNA mismatch repair protein [Neisseria meningitidis 053442]
          Length = 658

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 210/658 (31%), Positives = 341/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKPVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASDYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+                      G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRLEQARFGNMPSETPIPKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++      K+ SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGKLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++   +I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|319638431|ref|ZP_07993193.1| DNA mismatch repair protein mutL [Neisseria mucosa C102]
 gi|317400180|gb|EFV80839.1| DNA mismatch repair protein mutL [Neisseria mucosa C102]
          Length = 658

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 219/658 (33%), Positives = 349/658 (53%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   +    
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQDGSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKPVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------KGISTSSVLSKK 340
           HP K+ IRFR+   +   +  ++ KA+                      G++ + + S+ 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 341 MISSFHQDNAP-----------------KTHLPKYATSLTNTQEKLFLQENRLSTN---- 379
              +   D +                  KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 NSENLFDDVSNYPTGNKSDTRNAFGSSGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 380 --------DLLPSDDPTYSEDNDPVE--------------ESEATHYQLGIACAQIHQNY 417
                   DL  S        N P E               S++    LG A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSEMPTQKTDTPLSDGLPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++   +I
Sbjct: 539 AEALAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|71908777|ref|YP_286364.1| DNA mismatch repair protein MutL [Dechloromonas aromatica RCB]
 gi|71848398|gb|AAZ47894.1| DNA mismatch repair protein MutL [Dechloromonas aromatica RCB]
          Length = 615

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 207/611 (33%), Positives = 333/611 (54%), Gaps = 23/611 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L + +I+QIAAGE++ERP+  +KEL+ENSLDA S  ++  +  GG    +ITD+
Sbjct: 9   MPTIARLPDLLISQIAAGEVVERPASVLKELLENSLDAGSKAIQVHLEEGGVKLIRITDD 68

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+ +A+ RH TSKIS  DD   + T GFRGEAL S+ +V+ L++ SR      
Sbjct: 69  GCGIARDELALALTRHATSKISSLDDLERVGTLGFRGEALASVASVARLSITSRERGAAH 128

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             ++       +   P A+  GT+VE+RDL+F  PAR  FLKSE  E     D ++R+A+
Sbjct: 129 AWKLRGEPG--AEPEPAALMAGTVVEMRDLYFNTPARRKFLKSESTEFAHCADAVKRLAL 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P V+ + +    N +++       + P RI+ ++G++F+  A  ++  +  +++ G+ 
Sbjct: 187 TRPDVAISLTHNGRNLFQL----APADAPRRIADILGDEFLGAARAVDAGTGALSIGGFA 242

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT      +  YVF+NGR V+DK I   +R AY + +   R P V L + IDP  VDV
Sbjct: 243 IDPTRATDAKDGQYVFVNGRFVRDKIISHALREAYRDVLHGSRQPAVCLFVNIDPALVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-----------GISTSSVLSKKMISSFH 346
           NVHPAK+ +RFR+   +  F+  +IQ+ +                + SS      +S  +
Sbjct: 303 NVHPAKTEVRFRDSRAMHQFVFHAIQRTLAAPVQAEAAPALIERATPSSEYQAPALSPEN 362

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE---DNDPVEESEATH 403
           + N       ++  SL   +               +       SE      P+E + +  
Sbjct: 363 RPNVEYAPPLRHQGSLGVAEPAAAAYLAFARAAQDIGQSPAPRSEVAPQFQPIESTGSDG 422

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A AQ+H  YI++Q   GL+++D HAAHER+++EK++  F++ +I +Q LL P + 
Sbjct: 423 PPLGYALAQLHGIYILAQNARGLILIDMHAAHERILYEKLKTAFDNRQIATQALLIPAVF 482

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                + A + EH + L  LG +    GPN + +R +PA+L   +   L + +I E+ + 
Sbjct: 483 SADPLDIAAVEEHADALADLGFQITPLGPNQLGVRAVPALLQSGDPAALAKSLIAELREH 542

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             T     R   +LATMAC+G++R+ R++   EMN LLR+ME+   + QCNHGRPT+ +L
Sbjct: 543 GITQLATARRNELLATMACHGAVRARRQLTVPEMNALLRQMEETERAGQCNHGRPTWTEL 602

Query: 584 KLSDIEKLFGR 594
            +  ++KLF R
Sbjct: 603 TMDQLDKLFLR 613


>gi|319405154|emb|CBI78760.1| DNA mismatch repair protein MutL [Bartonella sp. AR 15-3]
          Length = 612

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 269/612 (43%), Positives = 392/612 (64%), Gaps = 19/612 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KEL+EN++DA +SR+E VIA GGKS  +++DNG
Sbjct: 1   MIIRHLSETIINQIAAGEVIERPANVVKELVENAIDAGASRIEIVIANGGKSLIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +++ +A+ RHCTSKI DD  NI   GFRGEALPSIG+VS L L SR   +N+ A+
Sbjct: 61  CGIPEDQLILAISRHCTSKIIDDVHNICFLGFRGEALPSIGSVSKLKLTSRTQNSNSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  +I   +P A NPGTIVEVRDLFF  PARL F+KS++ ETN ITD I+R+AIA+P
Sbjct: 121 IIVTAGRIEEPKPSAANPGTIVEVRDLFFVTPARLKFMKSDRAETNAITDTIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ + I     +      N     +RI+Q++G++F  N++ L+ K   + L G+ G+
Sbjct: 181 HIRFSLAGIDRAPMEFPAMEKNTQGQLQRITQIMGKEFAPNSLLLDAKRESVHLTGFVGL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DK +   IR AYA+ I   R+ V +L + + P  VDVNV
Sbjct: 241 PSFNRSNSLYQFAYVNGRPVRDKLLWGAIRGAYADVIAQNRHAVAILFIHLPPTDVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR+P++IR  II +I++A+++ GI  +S  S+ M+++F         + +  
Sbjct: 301 HPAKMDVRFRDPSLIRGLIIGAIREALHQTGIRPTSTGSEAMLAAFRTQPLETVKMHQPF 360

Query: 360 TSLTNTQ-----------------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
           +  T                      + LQE+ +   D L +         +    SE  
Sbjct: 361 SDSTPPYHFGPEITSIFHKPLDMTSSIDLQEDTIPIIDRLSTPSGDTRAAINK-PTSEEL 419

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
           HY LG A AQIH+NYI++QT D L+IVDQHAAHERL++E ++    S  + SQ LL PEI
Sbjct: 420 HYPLGAARAQIHKNYIVAQTQDSLIIVDQHAAHERLVYESLKNALYSKPLPSQLLLIPEI 479

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           +++ E +   ++ H + L + G+  + FG  AI + EIP++L + N+  L++D+ DE  +
Sbjct: 480 VEISEEDATCLLSHKDALKKFGLGIDSFGIGAIVVHEIPSMLGEINVQALIKDLADEAAE 539

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             T   L+  ++ + ATMAC+ SIRSGR +   EMN LLR++E  PNS+ CNHGRPT+I+
Sbjct: 540 YDTIDNLKGMLDYVAATMACHSSIRSGRLLHPEEMNALLRQIEATPNSATCNHGRPTYIE 599

Query: 583 LKLSDIEKLFGR 594
           LKL+DIE+LFGR
Sbjct: 600 LKLADIERLFGR 611


>gi|297184024|gb|ADI20144.1| DNA mismatch repair enzyme (predicted ATPase) [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 611

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 259/600 (43%), Positives = 387/600 (64%), Gaps = 12/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LS+   N+IAAGE++ERPS AIKEL+ENS+DA +SR++   + GGK+  ++ D+G G
Sbjct: 15  IRQLSDAAANRIAAGEVVERPSSAIKELVENSIDAGASRIDISYSDGGKTLIRVKDDGHG 74

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +   ++ +A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+ SR      GA I
Sbjct: 75  IAENQLLLALSRHATSKIDGTDLLNIHTFGFRGEALPSMGAVGRLTITSRIQDVAMGATI 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G  I  VRP     GT+VE+RDLF   PARL FL++++ E   I+DVI+R+A++ P 
Sbjct: 135 TVDGGLIGRVRPAPSTIGTVVELRDLFHATPARLKFLRTDRAEAGAISDVIKRLAMSEPF 194

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQ 234
            +FT    +     R         G+  +    R+S+V+G DF  N+  ++   + +TL 
Sbjct: 195 KAFTLRDVTGGGDGRIIFRADPETGDLFDAMYGRLSKVLGVDFAKNSFRVDADRDGMTLT 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT+++G++   ++F+NGR+V+DK +LS +R AY++ +  GRYPVV L +E D  +
Sbjct: 255 GYASLPTYSKGSSVSQFIFVNGRSVKDKNLLSALRAAYSDFLHSGRYPVVALFIECDFER 314

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAK+ +RFR P   R  +I  ++ A+ ++G   SS ++   + +F +       
Sbjct: 315 VDVNVHPAKAEVRFREPGTARGLVISGLRHALAEEGHRASSTIADATLGAFKKSGDINNS 374

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                 S + + E      +++  +++         ++ + +E+      +LG A AQIH
Sbjct: 375 S-NLRMSQSWSMEVPRHHPDQVGFSEIQNDFSSRQLDNENIIEQIS---NKLGAARAQIH 430

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           +NYI+SQT DGLVIVDQHAAHERL++EK++       +++QTLL PEII+L E + A +M
Sbjct: 431 ENYILSQTFDGLVIVDQHAAHERLVYEKLKNQMAMNGVSAQTLLIPEIIELSEQDAAELM 490

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E   +L+  G+  E FG N+I +RE PAIL + N   L+ DI+DE+ D S +  ++++++
Sbjct: 491 EISGELNGFGLNIENFGGNSIIVRETPAILGEVNAKNLILDILDELKDWSQSNIVKEKLD 550

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL+ +AC+GSIRSGR M+  EMN LLREME  P+S QCNHGRPT+++LKL+DIEKLFGR
Sbjct: 551 AILSRVACHGSIRSGRIMKVEEMNALLREMEATPHSGQCNHGRPTYVELKLNDIEKLFGR 610


>gi|325144738|gb|EGC67033.1| DNA mismatch repair protein MutL [Neisseria meningitidis
           M01-240013]
          Length = 658

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 342/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQNDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++ ++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQTASLGIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                    ++     K  +     ++ KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSVSNYPTGNKSDTHNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSPSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D+++E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLNELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|15677300|ref|NP_274454.1| DNA mismatch repair protein [Neisseria meningitidis MC58]
 gi|20455152|sp|Q9JYT2|MUTL_NEIMB RecName: Full=DNA mismatch repair protein mutL
 gi|7226683|gb|AAF41803.1| mismatch repair protein MutL [Neisseria meningitidis MC58]
 gi|316984569|gb|EFV63534.1| DNA mismatch repair MutL family protein [Neisseria meningitidis
           H44/76]
 gi|325134577|gb|EGC57221.1| DNA mismatch repair protein MutL [Neisseria meningitidis M13399]
 gi|325140613|gb|EGC63133.1| DNA mismatch repair protein MutL [Neisseria meningitidis CU385]
 gi|325199942|gb|ADY95397.1| DNA mismatch repair protein MutL [Neisseria meningitidis H44/76]
 gi|325205804|gb|ADZ01257.1| DNA mismatch repair protein MutL [Neisseria meningitidis
           M04-240196]
          Length = 658

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 342/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQNDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++ ++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQTASLGIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                    ++     K  +     ++ KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSVSNYPTGNKSDTHNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D+++E+    ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLNELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|238916922|ref|YP_002930439.1| DNA mismatch repair protein MutL [Eubacterium eligens ATCC 27750]
 gi|238872282|gb|ACR71992.1| DNA mismatch repair protein MutL [Eubacterium eligens ATCC 27750]
          Length = 625

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 189/627 (30%), Positives = 295/627 (47%), Gaps = 37/627 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  IN+IAAGE++ERPS  +KEL+EN++DA ++ +   I  GG SF ++TDNG
Sbjct: 1   MPITLLDQNTINKIAAGEVVERPSSVVKELVENAIDAGATAITVEIKEGGISFIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +EI +A +RH TSKI   +D   + + GFRGEAL SI AVS + L+++   + +G
Sbjct: 61  SGINKDEIEIAFKRHATSKIESIEDLMAVSSLGFRGEALASIAAVSQVELITKTADSLSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  I G     V  +    GT   VR+LF+  P R  FLK+   E   I  ++  +A++
Sbjct: 121 VRYTIDGGVPGEVAEIGAPEGTTFIVRNLFYNTPVRRKFLKTATTEGGYIGSLVEYLALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P +SF F +   N+      S N N  + I  V G D  NN  E++ KS +I   G+ G
Sbjct: 181 HPDISFRFISNNQNKLH---TSGNMNLKDIIYNVYGRDITNNLYEISGKSQDIEASGFIG 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   RGN      +INGR ++   I   I  AY   I    YP   +  +I+P  +DVN
Sbjct: 238 KPMVVRGNRTYENYYINGRYIKSSIITKAIEDAYKGFIMPHNYPFSAIHFKINPAIIDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RF N   I NF+  +  KA+N K +     +   +     ++   +  +P  
Sbjct: 298 VHPTKMELRFSNNEYIYNFVYDTCLKALNSKELIAEVSVPDPVAVKMQEEPVVRNVMPDV 357

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDD-----------------PTYSEDNDPVEESEA 401
                N  + +  +    S                                 + V +SE 
Sbjct: 358 KLPEKNVSDSMPCKTETKSAESAKAEIKPKRLPEPFEIKGSLQMVMEDKVRYEAVTKSEP 417

Query: 402 THYQLG--------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                                   Q+   Y + +  D   ++DQHAAHE++++E+     
Sbjct: 418 PKQMNLFENKLLDENSRNKYRIIGQLFDTYWLIEFEDKFYMMDQHAAHEKVLYERTMNKL 477

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           ++  I +Q +L P ++ L   E  +   + +   RLG + E FG N   +  IPA L K 
Sbjct: 478 HNKTIGTQMILPPIVLSLNMHEEEIYKTNQDIFKRLGYEIEEFGGNEYKVTGIPAGLPKM 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +  QLL D++D + + S      D I   +A+M+C  +++   ++   E   L+ E+ K 
Sbjct: 538 DYKQLLIDVLDGLSEESAGKD-PDIITEKVASMSCKAAVKGNNRLSFNEAFELMDELMKA 596

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            N   C HGRPT I +   +IEK F R
Sbjct: 597 ENPYNCPHGRPTLIMMSRYEIEKKFKR 623


>gi|291613850|ref|YP_003524007.1| DNA mismatch repair protein MutL [Sideroxydans lithotrophicus ES-1]
 gi|291583962|gb|ADE11620.1| DNA mismatch repair protein MutL [Sideroxydans lithotrophicus ES-1]
          Length = 640

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 203/641 (31%), Positives = 333/641 (51%), Gaps = 53/641 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L + +INQIAAGE+IERP+ A+KEL+ENSLDA ++ +   + GGG     + DNG 
Sbjct: 3   SIQLLPDLLINQIAAGEVIERPASALKELLENSLDAGATDIAVQLEGGGIKRLVVRDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A+ RH TSKI+  DD   + + GFRGEAL S+ AV+ +TL SR        
Sbjct: 63  GIAREQLPLALMRHATSKIASLDDLQRVASMGFRGEALASMAAVAQVTLTSRNADVAHAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I  +    S V P A   GT VE+R+L+F  PAR  FLKSE  E     +  +R+A++ 
Sbjct: 123 KIEAADGTQSDVTPAAHPQGTSVEMRELYFNTPARRKFLKSESTEFAWCEETFKRIALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN----------------------------------- 204
           P V+F+        +++    +  +                                   
Sbjct: 183 PDVAFSLQHNGKMVWQLAASKSTPSPYPLPEGEGFGGLPSPSGITSDLPARGLSRLASSS 242

Query: 205 -----------FPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
                        +RI+ ++G +F  +AV +  +   + L G   +P ++R   ++ Y F
Sbjct: 243 IRGIEGEEKHSLQQRITAILGPEFGQHAVNVERQIGPLHLYGIAALPAYSRSTRDEQYFF 302

Query: 254 INGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTI 313
           +NGR V+DK ++  +R AY + +   R+P  VL L++ P QVDVNVHPAKS +RFR    
Sbjct: 303 VNGRFVRDKVLMHAVRQAYQDILHHQRHPAFVLFLDMPPEQVDVNVHPAKSEVRFRESQG 362

Query: 314 IRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
           I  F+  ++Q A++    ST+S  S    S   +    +     +A      Q+ +    
Sbjct: 363 IHQFVFHALQDALSATMGSTASNQSATSPSPSGRGVGVREEPQPFAPI---QQQTMTFSA 419

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
            +      L  +     E      + +A    LG A  Q+   YI++Q   GL++VD HA
Sbjct: 420 AQPQAAYKLWEEAAVVREQESAAPQQDAH--PLGFALGQLSGIYILAQNQQGLIVVDMHA 477

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AHER+++E+++  F++ ++ +Q LL P        + A   E  E LH+LG        N
Sbjct: 478 AHERIVYERLKTAFDAQQMPTQPLLIPVTFAAEALDVATAEEEQEALHKLGFDIAPISTN 537

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
            +A+R +PA+L + +     R+++ E+ D   +  L +R   +LAT+AC+ ++R+ +++ 
Sbjct: 538 TLAVRAMPAMLKQSHAETAAREVLHELRDFGASRALTERRNELLATLACHSAVRANQQLS 597

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             EMN +LREME+   + QCNHGRPT+ ++ L++++ +F R
Sbjct: 598 LPEMNAILREMEQTERADQCNHGRPTWFQMTLAELDAMFMR 638


>gi|238022530|ref|ZP_04602956.1| hypothetical protein GCWU000324_02438 [Kingella oralis ATCC 51147]
 gi|237867144|gb|EEP68186.1| hypothetical protein GCWU000324_02438 [Kingella oralis ATCC 51147]
          Length = 636

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/638 (34%), Positives = 332/638 (52%), Gaps = 48/638 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L   +INQIAAGE++ERP+ A+KE++ENSLDA ++++   I GGG    ++ DN
Sbjct: 1   MPSIQFLPSHLINQIAAGEVVERPANALKEIVENSLDAGATQISVDIVGGGIKLLRVCDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM ++++P+A+ RH TSKI    D   + + GFRGE L SI +VS LTL SR   N  
Sbjct: 61  GCGMEADDLPLALSRHATSKIKSLSDLERVQSMGFRGEGLASIASVSRLTLTSRTTHNAH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             QI      +  V   A   GT +E+ +LFF  PAR  FLKSE  E      ++ R+A+
Sbjct: 121 AHQIRAVDGALGEVAAAAHPVGTTIEIAELFFNTPARRKFLKSENTEYAHCATMLERLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P VSF+        +    Q       ER++ ++G  F   A+ ++ ++ E+ L+G+ 
Sbjct: 181 ANPAVSFSLKNNGKTVFDYPAQP----LSERVAAIMGAAFQAAALPIDSQAGEMALRGFV 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PTF +G +++ + F+N R V+DK +L  ++ AY + +     P  VL L++ P QVDV
Sbjct: 237 SKPTFAQGKSDKQFFFVNNRFVRDKVMLHAVKQAYRDVLHNQITPAFVLFLDLPPEQVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK----MISSFHQDNAP-- 351
           NVHP K+ IRFR+   +   I  ++ KA+ +     +  +S            Q  AP  
Sbjct: 297 NVHPTKTEIRFRDSQAVHQMIFHALNKALAETRADVTESVSNAGALLQQRFVPQPAAPDE 356

Query: 352 ------------------------------KTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
                                            +P  A +    Q  L L ENR +    
Sbjct: 357 TLFLGSLKTEGFNGMTTAIPAADAFSGSPKSAPMPYQAAARAPQQRPLSLNENRAALQAY 416

Query: 382 L----PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                  DD    E            Y LG A AQ+   Y+++Q  D L++VD HAA ER
Sbjct: 417 AELYREDDDLAAFEPQAAQVRQPENAYPLGFAIAQLLGIYVLAQAADSLILVDMHAAAER 476

Query: 438 LIFEKMRQDFN-STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           + +EKM+   +    + +Q LL P   +    E A   ++  +L + G+     G   IA
Sbjct: 477 VNYEKMKAQRDAEGSLKTQMLLIPVAFEASHAELAARADYAAELAQYGLDLADLGNGQIA 536

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R +P +L K ++  L RD++ E+    ++ T++ +   IL+TMAC+GSIR+GR++   E
Sbjct: 537 VRAVPQMLGKADVAALARDVLRELAAVGSSQTIEAKENQILSTMACHGSIRAGRQLTLPE 596

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR+ME  P S+QCNHGRPT++KL L+D++ LF R
Sbjct: 597 MNALLRDMEATPRSNQCNHGRPTWVKLTLADLDGLFLR 634


>gi|241758859|ref|ZP_04756972.1| DNA mismatch repair protein MutL [Neisseria flavescens SK114]
 gi|241321067|gb|EER57280.1| DNA mismatch repair protein MutL [Neisseria flavescens SK114]
          Length = 658

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/658 (33%), Positives = 348/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHSDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTTTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN---- 379
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DGENLFDSASNYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 380 --------DLLPSDDPTYSEDNDPVE--------------ESEATHYQLGIACAQIHQNY 417
                   DL  S        N P E               S++    LG A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPTPKTDKQCSDGLPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++   +I
Sbjct: 539 AEMLTGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|121602207|ref|YP_989454.1| DNA mismatch repair protein [Bartonella bacilliformis KC583]
 gi|166231105|sp|A1UU01|MUTL_BARBK RecName: Full=DNA mismatch repair protein mutL
 gi|120614384|gb|ABM44985.1| DNA mismatch repair protein MutL [Bartonella bacilliformis KC583]
          Length = 611

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 266/611 (43%), Positives = 397/611 (64%), Gaps = 18/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  IKEL+EN++DA+++R+E  I  GGK+F +++DNG
Sbjct: 1   MIIRHLSENIINQIAAGEVIERPANVIKELVENAIDAQATRIEISIVNGGKNFIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ ++++ +AV RHCTSKI DD SNI   GFRGEALPSIG+V+ L L SR    +   +
Sbjct: 61  CGIPADQLTLAVSRHCTSKIVDDVSNICFLGFRGEALPSIGSVAKLKLTSRTQDADNANE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++   KI   +P A NPGTIVEVRDLFF  PARL F+K+++ ET+ ITD+I+R+AIA+P
Sbjct: 121 ISVIAGKIEGPKPAAANPGTIVEVRDLFFVTPARLKFMKTDRAETSAITDMIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ S+      +      N     +RI+Q++G++F  N++ LN +   + L G+T +
Sbjct: 181 HIRFSLSSTDRMLMEFPATENNTQGQLQRITQIMGKEFAPNSIALNAERESVRLTGFTCL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DK +   IR AYA+ I   R+ V ++ +++ P  VDVNV
Sbjct: 241 PSFNRSNSLHQFAYVNGRPVRDKLLWGAIRGAYADAIARDRHAVSIIFIDLPPADVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RFR+P +IR  II +I +A+++ G+  +S  S+ ++++F           +  
Sbjct: 301 HPTKADVRFRDPGLIRGLIIGAIHEALHQAGVRHTSTHSESVLTAFQIHPLENLKSAQRP 360

Query: 360 TSLTNTQ----------------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            S T+                  + + L+E  +   + L +   + +        +E  H
Sbjct: 361 FSYTSQPYHRVSTTTSMLQKPLDDSIDLREGIVPMMECLSAPS-SDTRATIQTSPTEELH 419

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           Y LG A AQIH+NYIISQT D L+IVDQHAAHERL++E ++    S  ++SQ LL PEI+
Sbjct: 420 YPLGAAKAQIHKNYIISQTQDSLIIVDQHAAHERLVYEALKNALYSKPLSSQLLLIPEIV 479

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +L E + A ++ H + L + G+  E FGP AI +RE PA+L + N   L++D+ DE  + 
Sbjct: 480 ELSEEDAACLLTHKDSLQKFGLGIEPFGPGAILVRETPAMLGEINAQALIKDLADEAAEY 539

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            TT  L+  ++ + ATMAC+ S+RSGR ++  EMN LLR++E+ P+SS CNHGRPT+I+L
Sbjct: 540 DTTNNLKAMLDYVAATMACHSSVRSGRLLRPEEMNALLRQIEETPHSSTCNHGRPTYIEL 599

Query: 584 KLSDIEKLFGR 594
           KL+DIE+LFGR
Sbjct: 600 KLADIERLFGR 610


>gi|167745631|ref|ZP_02417758.1| hypothetical protein ANACAC_00323 [Anaerostipes caccae DSM 14662]
 gi|167654943|gb|EDR99072.1| hypothetical protein ANACAC_00323 [Anaerostipes caccae DSM 14662]
          Length = 620

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 192/623 (30%), Positives = 305/623 (48%), Gaps = 39/623 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +K I+ IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG +  ++TDNG G
Sbjct: 4   IQLLDQKTIDNIAAGEVIERPASVVKELVENAIDAKATAVTVEIRDGGMTLMRVTDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EE+  A  RH TSKI   +D  ++ + GFRGEAL SI AV  + ++++     +G  
Sbjct: 64  IPKEEVRTAFLRHATSKIRTVEDLVSVSSLGFRGEALSSISAVGQVEVITKTAGAFSGVS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +   +  +    GT   VR+LF+  PAR  FLKS   E   +  ++  MA+++P
Sbjct: 124 YKIFGGEEQGLDEIGAPDGTTFLVRNLFYNTPARRKFLKSPVTEAGYVEQIMVHMALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F F     N+    + S NGN  + I  + G D     + ++ K   +++ GY G P
Sbjct: 184 DIAFKFIHNSKNKM---YTSGNGNVKDIIYHLYGRDVAGALLPISLKGPTVSVDGYVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +RGN N    FINGR ++ K I   I   Y       +YP V L +E++P  +DVNVH
Sbjct: 241 FISRGNRNYESYFINGRYIKSKIIYKAIEDGYKTFTMAHKYPFVCLNIEVEPELLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------SSVLSKKMISSFHQDN 349
           P K  IRFRN   +   +   I++ ++ + +               VL +KM   F Q  
Sbjct: 301 PTKMEIRFRNEKELYELLASGIKETLSHREMIPKAELGKQKKEAKPVLPEKMPEPFEQVR 360

Query: 350 APKTHLPKYA------------------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
             + H  K A                   +    ++ +F   N  + +        T +E
Sbjct: 361 REERHEEKAAEYTAPEIPAGPQGTLKKYAAKPEAKKSVFAGVNYRNDDGKEDLQQMTLNE 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            +   EE++           Q+ + Y + +  D L I+DQHAAHE++ +EK+ + F   K
Sbjct: 421 TSLLDEEAKPDR----KVIGQLFKTYWLIEYEDQLFIMDQHAAHEKVNYEKLMKSFREKK 476

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           I SQ +  P ++ L   E  ++ E  +    LG   E FG N   IR++PA L      +
Sbjct: 477 IYSQGVEPPYVVTLSMAEAKVLEETKDIFQELGFTIEAFGGNEFCIRQVPANLYGLKEKE 536

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L  +++D +          + I + +A+MAC  S +  ++M   E+  LL  + +  N  
Sbjct: 537 LFMELLDSLTADGVKKD-PEMITDKIASMACKMSAKGNQRMSLPEVRNLLDLLMECENPY 595

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRPT IK+   +IEK F R
Sbjct: 596 TCPHGRPTMIKMSKYEIEKKFKR 618


>gi|326795798|ref|YP_004313618.1| DNA mismatch repair protein mutL [Marinomonas mediterranea MMB-1]
 gi|326546562|gb|ADZ91782.1| DNA mismatch repair protein mutL [Marinomonas mediterranea MMB-1]
          Length = 661

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/657 (32%), Positives = 348/657 (52%), Gaps = 64/657 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  +KEL+ENSLDAE+++++  I  GG    +I DNG 
Sbjct: 3   RINLLSPRLANQIAAGEVVERPASVVKELLENSLDAEATQLDVDIEQGGVRRMKIRDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKIS  DD   + T GFRGEAL SI +VS + L S+    +   
Sbjct: 63  GIVKDDLSLAMSRHATSKISTLDDLEAVQTLGFRGEALASISSVSRMHLTSKAYGEDEAW 122

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++   G+ +++  RP +   GT +EVRDLFF  PAR  FL++E+ E N + +V++R+A++
Sbjct: 123 RVEAEGKDMTTAVRPASHPDGTTIEVRDLFFNTPARRKFLRTEKTEFNHLEEVVKRLALS 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F  S      Y +   +   +   R+  ++G+ FI NA+ ++ ++  + L G+ G
Sbjct: 183 RYDVGFRLSHNGKQVYDLRPVTDQLHAEHRLGTLLGKKFIENALTIDVEAAGLRLWGWIG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL LE+DP  VDVN
Sbjct: 243 LPTFSRSQADLQYFFVNGRVVRDKLVAHAVRQAYRDVLYNGRHPTFVLYLELDPATVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---------------SSVLSKKMIS 343
           VHP K  +RFR+  ++ +F+   I K I      +               +S+ +++   
Sbjct: 303 VHPTKHEVRFRDGRLVHDFLFSRIHKVIADVRPESGEAPTQIGGAPDAEVASMPTQQSRM 362

Query: 344 SFHQDNAPKTHLPKYATSLTNTQ------------------------------------- 366
           +F ++         +     N                                       
Sbjct: 363 AFQREPQSAAGGVPWGAPNNNPVGGEQVRGQLEGLRQLNENANQALGVVGGGEIPQGIDP 422

Query: 367 --------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-GIACAQIHQNY 417
                             +       +        + V ES+A      G A AQIH  Y
Sbjct: 423 LTGEILELASNSSMPRVETEQTFYRQEGDNGRRFEELVSESDAHDMPPLGYAVAQIHGVY 482

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+++++ GL++VD HAAHER+++E+M+  F +  + SQ LL P  + + + E  L+ +  
Sbjct: 483 ILAESSVGLIVVDMHAAHERIVYERMKNAFYAKSVPSQPLLVPINVTVSQSEADLVEDSQ 542

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
                 G K ER G  ++ +RE+P IL   ++  L+RD++ ++  +  T  L+ R   ++
Sbjct: 543 SVFEAFGFKVERTGVESVMVREVPIILINGDVENLVRDVVSDLTVNGATDLLEARANELM 602

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           A+MAC+G++R+ RK+   EMN LLR+ME    S QCNHGRPT+ +L +SD++KLF R
Sbjct: 603 ASMACHGAVRANRKLTIAEMNSLLRDMEVTERSGQCNHGRPTWTQLSMSDLDKLFLR 659


>gi|317472766|ref|ZP_07932078.1| DNA mismatch repair protein MutL [Anaerostipes sp. 3_2_56FAA]
 gi|316899758|gb|EFV21760.1| DNA mismatch repair protein MutL [Anaerostipes sp. 3_2_56FAA]
          Length = 620

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 192/621 (30%), Positives = 307/621 (49%), Gaps = 35/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +K I+ IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG +  ++TDNG G
Sbjct: 4   IQLLDQKTIDNIAAGEVIERPASVVKELVENAIDAKATAVTVEIRDGGMTLMRVTDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EE+  A  RH TSKI   +D  ++ + GFRGEAL SI AV  + ++++     +G  
Sbjct: 64  IPKEEVRTAFLRHATSKIRTVEDLVSVSSLGFRGEALSSISAVGQVEVITKTAGAFSGVS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +   +  +    GT   VR+LF+  PAR  FLKS   E   +  ++  MA+++P
Sbjct: 124 YKIFGGEEQGLDEIGAPDGTTFLVRNLFYNTPARRKFLKSPVTEAGYVEQIMVHMALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F F     N+    + S NGN  + I  + G D     + ++ K   +++ GY G P
Sbjct: 184 DIAFKFIHNSKNKM---YTSGNGNVKDIIYHLYGRDVAGALLPISLKGPTVSVDGYVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +RGN N    FINGR ++ K I   I   Y       +YP V L +E++P  +DVNVH
Sbjct: 241 FISRGNRNYESYFINGRYIKSKIIYKAIEDGYKTFTMAHKYPFVCLNIEVEPELLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------SSVLSKKMISSF---- 345
           P K  IRFRN   +   +   I++ ++ + +               VL +KM   F    
Sbjct: 301 PTKMEIRFRNEKELYELLASGIKETLSHREMIPKAELGKQKKEAKPVLPEKMPEPFEQVR 360

Query: 346 ----HQDNAPKTHLPKYATSLTNTQEKLFLQENRLST--------NDLLPSDDPTYSEDN 393
               H++ A +   P+       T +K  ++     +        ND    D    + + 
Sbjct: 361 REERHEEKAAEYTAPEIPAGPQGTLKKYAVKPEAKKSVFAGVNYRNDDGKEDLQQMTLNE 420

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             + + EA   +      Q+ + Y + +  D L I+DQHAAHE++ +EK+ + F   KI 
Sbjct: 421 TSLLDEEAKPDR--KVIGQLFKTYWLIEYEDQLFIMDQHAAHEKVNYEKLMKSFREKKIY 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ +  P ++ L   E  ++ E  +    LG   E FG N   IR++PA L      +L 
Sbjct: 479 SQGVEPPYVVTLSMAEAKVLEETKDIFQELGFTIEAFGGNEFCIRQVPANLYGLKEKELF 538

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            +++D +          + I + +A+MAC  S +  ++M   E+  LL  + +  N   C
Sbjct: 539 MELLDSLTADGVKKD-PEMITDKIASMACKMSAKGNQRMSLPEVRNLLDLLMECENPYTC 597

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRPT IK+   +IEK F R
Sbjct: 598 PHGRPTMIKMSKYEIEKKFKR 618


>gi|325201860|gb|ADY97314.1| DNA mismatch repair protein MutL [Neisseria meningitidis
           M01-240149]
 gi|325208388|gb|ADZ03840.1| DNA mismatch repair protein MutL [Neisseria meningitidis NZ-05/33]
          Length = 658

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/658 (32%), Positives = 343/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIGLALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E    T ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCTTMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS     PERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPTQS----LPERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +      + KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASDYPTGNKPDTRNAFGASGKTAPMPYQAARAPQQHSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRLEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++      K+ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGKLQSQRLLIPVTFATSHEECAALSDH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++    I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLSELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|78065327|ref|YP_368096.1| DNA mismatch repair protein [Burkholderia sp. 383]
 gi|77966072|gb|ABB07452.1| DNA mismatch repair protein MutL [Burkholderia sp. 383]
          Length = 661

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 198/644 (30%), Positives = 327/644 (50%), Gaps = 59/644 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA +S +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGASTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELALALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADAAHAMK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A + GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGSTGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDSFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLPK 357
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           +S   +  A     P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAQLSPAPRGPASFLDTPL 375

Query: 358 YATSLTNT-------------QEKLFLQENRLSTNDLLPSDDPTYSED------------ 392
             +   N                  ++++ R++   L  +      +             
Sbjct: 376 GQSQQGNAIGGSGFSPSSSSSSGNTWMRQARMTQGTLPVAQPLALYDALFGRKDTGAGTP 435

Query: 393 ----------------------NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
                                   P+  +      LG A  QIH  Y+++Q   GLVIVD
Sbjct: 436 DGTTTIARDSADAPLAPLPGFLASPIAATAHDEQPLGFALGQIHGIYVLAQNAHGLVIVD 495

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            HAAHER+++E+ +       +  Q LL P  +     E   + E  + L  LG      
Sbjct: 496 MHAAHERILYEQFKNALADRSVAVQALLLPISMTATPVEIGTVEEERDTLESLGFDLAVL 555

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
            P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R
Sbjct: 556 SPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRANR 615

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 RLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 659


>gi|319406600|emb|CBI80242.1| DNA mismatch repair protein MutL [Bartonella sp. 1-1C]
          Length = 612

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 275/612 (44%), Positives = 394/612 (64%), Gaps = 19/612 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KELIEN++DA +SR+E VIA GGKS  +++DNG
Sbjct: 1   MIIRHLSETIINQIAAGEVIERPANVVKELIENAIDAGASRIEIVIANGGKSLIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +++ +AV RHCTSKI+DD  NI   GFRGEALPSIG+VS L L SR   +++ A+
Sbjct: 61  CGIPEDQLTLAVSRHCTSKITDDVHNICFLGFRGEALPSIGSVSKLKLTSRIQNSDSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  KI   +P A NPGTIVEVRDLFF  PARL F+KS++ ET  ITD I+R+AIA+P
Sbjct: 121 IIVNAGKIEGPKPSAANPGTIVEVRDLFFVTPARLKFMKSDRSETIAITDTIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ + I     +      N     +RI+Q++G++F  N++ L+ K   + L G+ G+
Sbjct: 181 HIRFSLAGIDRAPMEFPAMEQNTQGQLQRITQIMGKEFAPNSLILDAKRESVHLTGFIGL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DK +   IR AYA+ I   R+ V +L + + P  VDVNV
Sbjct: 241 PSFNRSNSLHQFAYVNGRPVRDKLLWGAIRGAYADVIARDRHAVAILFIHLPPTDVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR+P++IR  II +I++A+++ GI  +S  S+ M+++F  +   +T     +
Sbjct: 301 HPAKMDVRFRDPSLIRGLIIGAIREALHQTGIRPTSTDSEAMLAAFRTEPL-ETEKMHQS 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-----------------SEAT 402
            S       +  +   +    L  +    + ED  P+ E                 SE  
Sbjct: 360 FSYDARPRHIDPKLTSIFHKPLDINSSIDFQEDTIPIMEHLSTPSGDTRATINALTSEEL 419

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
           HY LG A AQIH+NYI++QT D LVIVDQHAAHERL++E ++    S  + SQ LL PEI
Sbjct: 420 HYPLGAARAQIHKNYIVAQTQDSLVIVDQHAAHERLVYEALKNALYSQPLPSQLLLIPEI 479

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++L E +   ++ H + L + G+  E FG  AIA+ E P++L + NI  L++D+ DE  +
Sbjct: 480 VELSEEDATCLLSHKDALKKFGLGIESFGIGAIAVHETPSMLGEINIQALIKDLADEATE 539

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             T   L+  ++ + ATMAC+ SIRSGR +   EMN LLR++E  PNS+ CNHGRPT+I+
Sbjct: 540 YDTIDNLKGMLDYVAATMACHSSIRSGRLLHPEEMNALLRQIEATPNSATCNHGRPTYIE 599

Query: 583 LKLSDIEKLFGR 594
           LKL+DIE+LFGR
Sbjct: 600 LKLADIERLFGR 611


>gi|298368806|ref|ZP_06980124.1| DNA mismatch repair protein MutL [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282809|gb|EFI24296.1| DNA mismatch repair protein MutL [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 665

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/665 (32%), Positives = 348/665 (52%), Gaps = 76/665 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA+++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDADATAIEVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   +    
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQDGSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+S+    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSNPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDF-INNAVELNEKSNEITLQGYTG 238
           P ++F+        +K+       N  ERI+ ++GEDF    ++E++  +  + L G   
Sbjct: 183 PHIAFSLKRDGKQVFKLPA----QNLHERIAAIVGEDFQAAASLEIDSGNGALRLYGAIA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVN
Sbjct: 239 KPTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------KGISTSSVLSK 339
           VHP K+ IRFR+   +   +  ++ KA+                      GI  ++  S+
Sbjct: 299 VHPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVGNAGEVLHEITGIRPAATSSE 358

Query: 340 KMISSFHQDNAP------------------------KTHLPKYATSLTNTQEKLFLQENR 375
              S FH +                           KT    Y  +    Q  L L+E+R
Sbjct: 359 NEHSGFHPNPTASSENIFAAAPSAHTSEPRNAFSSGKTAPMPYQAARAPQQRSLSLRESR 418

Query: 376 LSTNDLLPSDDPTYSEDND-------------------------PVEESEATHYQLGIAC 410
            + N        T +++ D                           ++ +     LG A 
Sbjct: 419 AALNTYAELFKNTAADEADIELAQFEQARFGSTSATSSENSARSFSDDPKPELPPLGFAI 478

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGE 469
           AQ+   YI++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        E
Sbjct: 479 AQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEE 538

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           CA + +H + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+
Sbjct: 539 CAALADHADTLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTI 598

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           ++   +ILATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++
Sbjct: 599 EEHENHILATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELD 658

Query: 590 KLFGR 594
            LF R
Sbjct: 659 ALFLR 663


>gi|261400853|ref|ZP_05986978.1| DNA mismatch repair protein MutL [Neisseria lactamica ATCC 23970]
 gi|269209324|gb|EEZ75779.1| DNA mismatch repair protein MutL [Neisseria lactamica ATCC 23970]
          Length = 658

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/658 (32%), Positives = 341/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DNENLFDSASDYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQRSLSLRESRAAINTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSPSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM RQ   + ++ SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRRENGRLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  PA+L K ++  L RD++ E     ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPAMLGKSDVVSLARDVLGEFAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|319410690|emb|CBY91069.1| DNA mismatch repair protein MutL [Neisseria meningitidis WUE 2594]
          Length = 658

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 214/658 (32%), Positives = 340/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      +I  +A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMIELLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASDYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+                      G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELNRLEQARFGNMPSETPIPKTDTPLSDGLPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM RQ   + K+ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRRENGKLQSQRLLIPSTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++    I
Sbjct: 539 AEALAGFGLELSDMGGNTLAVRTVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|91206202|ref|YP_538557.1| DNA mismatch repair protein [Rickettsia bellii RML369-C]
 gi|122990884|sp|Q1RGP6|MUTL_RICBR RecName: Full=DNA mismatch repair protein mutL
 gi|91069746|gb|ABE05468.1| DNA mismatch repair protein MutL [Rickettsia bellii RML369-C]
          Length = 611

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/610 (40%), Positives = 373/610 (61%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKLLSESTINRIAAGEVIERPASVVKELVENAVDAGSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+ + DF NIHTFGFRGEALPSI A+S + + S+   N    
Sbjct: 61  VGMTDKELEIAVERHTTSKLDETDFLNIHTFGFRGEALPSIAAISKMLITSKKRDNQKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     + P   N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 121 QIKLIGGDEKQIAPAIHNEGTKIEIRDLFFATPARLKFLRTDKTELAATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQS--TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P++SF+ +       K+  Q+     N  +RI  VIGEDFI NA  ++ KS + ++ GYT
Sbjct: 181 PEISFSLTHDGKTLLKLKGQNKDAENNLKQRIIDVIGEDFIKNASYIDFKSPDFSIYGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+NR ++   ++FIN R V+DK +   +R AY + +P  RYP+  + L+IDP+ VDV
Sbjct: 241 SIPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYMPRDRYPLCAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL-- 355
           NVHPAK+ +RF +P  +RN +I SI+ A++ K    S+ ++   I  F      K     
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIDSIKNALSNKSHIASTTIASSAIELFKNPFVNKEPAIS 360

Query: 356 ---------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
                     +Y  + + T  K     +     D LP        +     E + +    
Sbjct: 361 KPLNVNSKPSEYRPATSPTVPKYTPNNSCQKLIDTLPHARIEQEVEQRIQNEPQKSSQYR 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  Y+ISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYVISQTEDSIVITDQHAAHERLGYEKIKNYIKNEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E    ++ E+ + L +LG+  E+FG  +I + EIP IL   N+ +L++D+ D + +  
Sbjct: 481 PDEKRADILYENKDKLSKLGLSLEKFGEKSIIVTEIPNILGDINVQKLIQDLADHLAECG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LK
Sbjct: 541 ENIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPFSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|115350714|ref|YP_772553.1| DNA mismatch repair protein [Burkholderia ambifaria AMMD]
 gi|115280702|gb|ABI86219.1| DNA mismatch repair protein MutL [Burkholderia ambifaria AMMD]
          Length = 661

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 199/644 (30%), Positives = 332/644 (51%), Gaps = 59/644 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR  +     +
Sbjct: 83  IPPDELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTAEVAHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DATTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLP- 356
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           +S      A   + P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAQLSPAPGGPASFLNTPL 375

Query: 357 -------------KYATSLTNTQEKLFLQENRLS-------------------------- 377
                           +S +++    ++++ R++                          
Sbjct: 376 GLGAASGTGGSGFSSPSSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDTGAGT 435

Query: 378 -------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
                   +D   +          P+  +      LG A  QIH  Y+++Q   GLVIVD
Sbjct: 436 PDGTTVIAHDSASAPTMPPGFVASPLAATAHDEQPLGFALGQIHGIYVLAQNAHGLVIVD 495

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            HAAHER+++E+ +       I  Q+LL P  +     E   + E  + L  LG      
Sbjct: 496 MHAAHERILYEQFKNALADRTIAVQSLLLPISMTATPVEIGTVEEERDTLESLGFDLAVL 555

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
            P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R
Sbjct: 556 SPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRANR 615

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 RLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 659


>gi|325136514|gb|EGC59118.1| DNA mismatch repair protein MutL [Neisseria meningitidis M0579]
          Length = 658

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 339/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG     ++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIHVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSLLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS        GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAATHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                    ++     K  +     ++ KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSVSNYPTGNKSDTHNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  PA+L K ++  L RD+++E     ++ T+++   +I
Sbjct: 539 AEALAGFGLELSDMGGNTLAVRAAPAMLGKSDVVSLARDVLNEFAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|255066273|ref|ZP_05318128.1| DNA mismatch repair protein MutL [Neisseria sicca ATCC 29256]
 gi|255049483|gb|EET44947.1| DNA mismatch repair protein MutL [Neisseria sicca ATCC 29256]
          Length = 664

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 215/664 (32%), Positives = 346/664 (52%), Gaps = 75/664 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS L L SR   +    
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLILTSRQDGSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+S+    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSNPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++GEDF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGEDFQAASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------KGISTSSVLSKK 340
           HP K+ IRFR+   +   +  ++ KA+                      GI  ++  S+ 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHEITGIRPTATSSEN 358

Query: 341 MISSFHQDNAP------------------------KTHLPKYATSLTNTQEKLFLQENRL 376
               F Q+                           KT    Y  +    Q  L L+E+R 
Sbjct: 359 EHHQFLQNPTASSENIFAAAPNTHASEPRSTFGSGKTAPMPYQAARAPQQRSLSLRESRA 418

Query: 377 STNDLLPSDDPTYSEDND-------------------------PVEESEATHYQLGIACA 411
           + N        T +++ D                           ++ +     LG A A
Sbjct: 419 ALNTYAELFKNTAADEADIELAQFEQARFGNTTATSSENPARAFSDDPKPELPPLGFAIA 478

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGEC 470
           Q+   YI++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        EC
Sbjct: 479 QLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQRLLIPVTFAASHEEC 538

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A + +H + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T++
Sbjct: 539 AALADHGDTLAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIE 598

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           +   +ILATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ 
Sbjct: 599 EHENHILATMSCHGSVRAGRQLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDA 658

Query: 591 LFGR 594
           LF R
Sbjct: 659 LFLR 662


>gi|294787957|ref|ZP_06753201.1| DNA mismatch repair protein MutL [Simonsiella muelleri ATCC 29453]
 gi|294484250|gb|EFG31933.1| DNA mismatch repair protein MutL [Simonsiella muelleri ATCC 29453]
          Length = 626

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 218/626 (34%), Positives = 339/626 (54%), Gaps = 37/626 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L   +INQIAAGE++ERP+ A+KE++ENSLDA +S+V   I GGG    ++TDNG 
Sbjct: 3   RIAQLPNHLINQIAAGEVVERPANALKEILENSLDAGASQVSVEITGGGIKLIRVTDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI    D  ++ + GFRGE L SI +VS LTL SR  +     
Sbjct: 63  GIHADDLPLALSRHATSKIKNLSDLEHVRSMGFRGEGLASIASVSRLTLTSRTAELPHAH 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I      +S +   +   GT VEV +LFF  PAR  FLKSE  E      ++ R+A+A 
Sbjct: 123 EIRAEDGVLSPIAAASHPIGTTVEVCELFFNTPARRQFLKSENTEYAHCATMLERLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F+      + +    Q+      +R+  ++GEDF    + ++   N + + G+   
Sbjct: 183 PQVAFSLKNNGKSVFNYPAQT----LAQRVGTIVGEDFQAACLPVDSGENILRVHGFVSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G ++  + F+N R V+DK IL  ++ AY + +     P  VL L+I P  VDVNV
Sbjct: 239 PTFAKGKSDMQFCFVNNRFVRDKVILHAVKQAYRDVLHNQIVPAFVLFLDIPPELVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-------------------K 340
           HP K+ +RFR+   +   I  ++ K + +     +  +S                    K
Sbjct: 299 HPTKTEVRFRDSQAVHQLIFHNLNKVLAETRADVTDSVSNAGDILHERILPNDTFSGSLK 358

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL------------LPSDDPT 388
             +S +  N  K     YA      Q  L L+E+R + N              L      
Sbjct: 359 SENSNNYSNNQKVAPANYAAFRAPIQRNLSLKESRAAMNTYAELYRQDNELAELEQTRLN 418

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            + +N      E   Y LG A AQ+   YI+SQT++GL++VD HAA ER+ +EKM+    
Sbjct: 419 VAPENPKNNHVENQEYPLGFALAQLLGIYILSQTSEGLILVDMHAAAERVNYEKMKTQRL 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           S  + +Q LL P        E A + +H + LH  G++ +  G   IAI  IPA+L + +
Sbjct: 479 SGSLKTQMLLIPMRFQATHEERATLADHADTLHEYGLQLQDLGDGQIAILAIPAMLGQAD 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              L +D++ E+    ++  ++     I++TMAC+GS+R+GR++   EMN LLR+ME  P
Sbjct: 539 AVALAQDVLRELACVGSSQIVEKLENQIISTMACHGSVRAGRQLTQPEMNALLRDMENTP 598

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S+QCNHGRPT+++L L+D++ LF R
Sbjct: 599 RSNQCNHGRPTWVRLALTDLDALFLR 624


>gi|332283318|ref|YP_004415229.1| DNA mismatch repair protein [Pusillimonas sp. T7-7]
 gi|330427271|gb|AEC18605.1| DNA mismatch repair protein [Pusillimonas sp. T7-7]
          Length = 624

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 203/624 (32%), Positives = 333/624 (53%), Gaps = 38/624 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L + +I+QIAAGE+IERP+  +KEL+EN++DA +  +E  + GGG     ++D+G 
Sbjct: 6   SIAQLPDLLISQIAAGEVIERPASVLKELLENAIDAGARAIEVRLDGGGIRRISVSDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+ +A+ RH TSKIS  D+   +++ GFRGEAL S+ +V+ LTL SR        
Sbjct: 66  GIPKSELKLALTRHATSKISSLDELEAVNSMGFRGEALASVASVARLTLTSRSAAEPHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI    ++       + + GT ++VR LF  +PAR  FL++E  E     D + R+A+A+
Sbjct: 126 QIEAEQDE---PSAASGSMGTTIDVRQLFDNVPARRKFLRAEATEYGHCVDALERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F        +             +R+  V+G++F +  + +  +   I+LQG    
Sbjct: 183 PHIAFRLFHNDKAQRNWRA----SEVGQRVRDVLGQEFTDQGLYVEHEQGLISLQGVITR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+ R  A++ Y+++NGR V+D+ +   +R AYA+ +   R P  VL L IDP  VDVNV
Sbjct: 239 PTYARSRADRQYLYVNGRYVKDRTVAHAVRQAYADVLHGDRQPAFVLFLTIDPAMVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR    I  F+ Q++ + ++  G  + +              A       YA
Sbjct: 299 HPAKHEVRFRESGAIHRFVNQTLTQVLSAAGGQSLATSELAANHPTESAQAGTMSTDSYA 358

Query: 360 TSL-------------------------TNTQEKLF----LQENRLSTNDLLPSDDPTYS 390
           T                              Q++ F        R      L       +
Sbjct: 359 TEPGIHQPAPTGAGGIADGQAPIPAPYRPQQQQQTFRLHEQAPGRKQDWQSLYRPLDAPA 418

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
              D  + + A  + LG+A  Q+H  YI++Q  DGLV+VD HAAHER+++E++++  ++ 
Sbjct: 419 VHADVADSTGAAEFPLGMALGQLHGIYILAQNHDGLVLVDMHAAHERVVYEELKKAMDAQ 478

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            +  Q LL P + +  E +  LI EH   L+ LG+     GPN+ A+R +PA+L+  +I 
Sbjct: 479 SLPRQELLVPVVFNATEKDIGLIEEHAHTLNELGLSIRPAGPNSAAVRAVPALLANGDIE 538

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            L R ++ ++     +  L ++   +L+TMAC+GS+R+ R++   EMN LLR+ME+   +
Sbjct: 539 ALARSVLRDLASVGVSPRLTEQRNELLSTMACHGSVRANRRLTLDEMNGLLRKMEQTERA 598

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT+++ K+ +++KLF R
Sbjct: 599 DQCNHGRPTWVQWKVGELDKLFMR 622


>gi|187477234|ref|YP_785258.1| DNA mismatch repair protein [Bordetella avium 197N]
 gi|123752220|sp|Q2KX20|MUTL_BORA1 RecName: Full=DNA mismatch repair protein mutL
 gi|115421820|emb|CAJ48337.1| DNA mismatch repair protein [Bordetella avium 197N]
          Length = 621

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 204/621 (32%), Positives = 331/621 (53%), Gaps = 35/621 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L + +I+QIAAGE+IERP+  +KE++EN++DA +  +E  + GGG     ++D+GF
Sbjct: 6   PIAQLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEIRLEGGGIRRIAVSDDGF 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+AV +H TSKI    +  ++ + GFRGEAL SI +V+ LT++SR    +   
Sbjct: 66  GIPPEELPLAVAQHATSKIRSLSELESVASMGFRGEALASIASVARLTIISRVRNGDHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI  S  +I    P +  PGT V+VR LF  +PAR  FL+SE  E     D + R+A+A 
Sbjct: 126 QIDASSGEI---SPASGPPGTTVDVRQLFDNVPARRKFLRSEATEFGHCLDALERIALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F        + +        +  +RI  V+G +F   A+ ++ +   I L G    
Sbjct: 183 PQIAFRLFHHDKAQRQWLP----ADPGQRIRDVLGAEFAGQALPVDTRYGAIGLMGMVTR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R+AYA+ +   R P  VL LE+DP  VDVNV
Sbjct: 239 PTAARARADRQYLYVNGRYVRDRTVSHALRSAYADVLHGDRQPAYVLYLEVDPAAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN---------- 349
           HPAK  +RFR+   +  F+ Q + +A+ + G + +             +           
Sbjct: 299 HPAKHEVRFRDSGAVHRFVSQVVGQALAQTGGAQALDAEDPPPEPIRPETPPPPSLSPAA 358

Query: 350 ----------------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P + +P           + +    R               +  
Sbjct: 359 ALPSAPAQPPAAPYPSRPHSQMPFRLQEPAGVSARDWQSLYRPLAEPGATPQTADRPQAA 418

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
            P        + LG+A  Q+H  YI++Q   GLV+VD HAAHER+++E+++   +   + 
Sbjct: 419 APARLVSEEEHPLGMALGQLHGVYILAQNARGLVLVDMHAAHERVVYEQLKHALDERSLP 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P +    E + AL  E+ E L  LG +    GP +IA+R +PA+L++ +I  L 
Sbjct: 479 RQDLLVPVVFHAQEKDVALAEEYAEQLSELGFEMRPSGPTSIAVRSVPALLARGDIEGLA 538

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           R ++ ++     +  L ++   +L+TMAC+GS+R+ R++   EMN LLR+ME    + QC
Sbjct: 539 RAVLRDLGAVGASQLLTEQRNELLSTMACHGSVRANRRLTIEEMNALLRQMEATERADQC 598

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+I+  ++D++KLF R
Sbjct: 599 NHGRPTWIQWTVNDLDKLFLR 619


>gi|117924347|ref|YP_864964.1| DNA mismatch repair protein MutL [Magnetococcus sp. MC-1]
 gi|117608103|gb|ABK43558.1| DNA mismatch repair protein MutL [Magnetococcus sp. MC-1]
          Length = 632

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 231/624 (37%), Positives = 358/624 (57%), Gaps = 31/624 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++++L E + NQIAAGE++ERP+  IKEL+ENS+DA +S +E     GGK   Q+ DNG 
Sbjct: 8   RVQQLPETLANQIAAGEVVERPASVIKELVENSIDAGASLIEVKAEQGGKRLMQVVDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +E  +A+ RH TSKI   +D   I T GFRGEALPS+G+V+ L L +R  +N  G 
Sbjct: 68  GMSEDEASLALTRHATSKIHTAEDLFRIATLGFRGEALPSVGSVAQLELATRIEENADGV 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G    + + +AM  GT V VR+LFF  PARL FLK+++ E N I ++++R AIAY
Sbjct: 128 ALTVMGGARQASKRLAMPVGTRVTVRNLFFNTPARLKFLKADRTEANQIMELMQRFAIAY 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  S            +    + ER+  V+G +FI N +E+N    ++ ++G+ G+
Sbjct: 188 PHVGFKLSLNGKEVQHYRAVADESAYVERLGAVLGAEFIPNCMEINSGDAQMRVRGWVGL 247

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT NRG+A+  ++F+NGR V+DK + + +R AY + +P  R+P+  L +++DP +VDVNV
Sbjct: 248 PTLNRGSASAMHLFVNGRWVRDKVVTAAVREAYRDLMPRERFPLTALFVQVDPEEVDVNV 307

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN---------- 349
           HPAK+ +RFR+   +   + +++ + ++  G          + S+               
Sbjct: 308 HPAKAEVRFRHGQSVYGLLRRTLAEVLHGMGARCYQASEAPLQSAEEPPEYGADLGKQRL 367

Query: 350 -----------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLL-------PSDDPTYSE 391
                       P+   P Y  +         +          L        S  P    
Sbjct: 368 AEPVQLPAAVSQPERWRPSYPPAGEGVPRAAAVANWSPQRQGALPLQSRDSYSPAPGQPR 427

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST- 450
              P  E+   H  LG A AQ+H  YI++Q+  G+V++DQHAAHER+++E+M+  +    
Sbjct: 428 PTAPHHEAAMDHGPLGQAVAQLHNLYIVAQSEQGMVLIDQHAAHERIVYERMKGAWARKE 487

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           K+ +Q LL PE++ L E E   +      L +LGI  E FG NA  IRE+PA+L++  I 
Sbjct: 488 KVETQMLLMPEVLQLSEVEAERMSHWRSTLQQLGIAVEPFGQNAFVIREVPALLARGQIA 547

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            L+RD+++++        L +  + +LA+MAC+GS+RSGR +   EMN LLREME+ P++
Sbjct: 548 PLVRDVVEQLEQVGQESALSEAQDAVLASMACHGSVRSGRALTREEMNALLREMERTPHT 607

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            QCNHGRPT ++L L+D+E+LF R
Sbjct: 608 GQCNHGRPTHVRLSLADLERLFER 631


>gi|260438406|ref|ZP_05792222.1| DNA mismatch repair protein HexB [Butyrivibrio crossotus DSM 2876]
 gi|292808992|gb|EFF68197.1| DNA mismatch repair protein HexB [Butyrivibrio crossotus DSM 2876]
          Length = 627

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 191/630 (30%), Positives = 310/630 (49%), Gaps = 41/630 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  IN+IAAGE+++RPS  +KEL+EN++DA ++ +   I  GG S  +ITDNG
Sbjct: 1   MAINLLDKNTINKIAAGEVVDRPSSVVKELVENAIDAGATAITVEIKDGGISLIRITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A  RH TSKI    D + I + GFRGEAL SI AV+ + L+++     TG
Sbjct: 61  CGIDKNEVRLAFLRHSTSKIKSAADLAGISSLGFRGEALSSISAVAQVELITKTKDALTG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  I G        V    GT   VR+LF+  PAR  FLK+   E   I+ ++  + ++
Sbjct: 121 TRYQIDGGTEKVFEEVGAPDGTTFLVRNLFYNTPARRKFLKTPATEGGYISSLMENLCLS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P++S  F      + +    + NG   + I  V G +  +N +E++ + N+ +++GY G
Sbjct: 181 HPEISIRFINNNQPKIQ---TTGNGKLKDNIYVVYGREITSNLLEIDRQFNDYSIKGYVG 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  +RGN N    +INGR V+   +   I  AYA  I   +YP   L + I+P  +DVN
Sbjct: 238 KPLISRGNRNFENYYINGRYVKSNIVARAIEDAYAGFIMQHKYPFTSLHITINPELLDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTH--- 354
           VHP+K  +RF N   I N + +SI  A+  + +     L K K       +   K     
Sbjct: 298 VHPSKMELRFSNEQEIYNNVKESILLALTHRELIPEINLEKAKKEEPLKVEYNKKEPDTV 357

Query: 355 ------------------------LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
                                   +P+    L + +     +  R    + +  +     
Sbjct: 358 VNYEKAVEKQPETVNEKEPVIVRKVPEVKKPLVSARMPEPFETKRAVVYEEVVKEIKQQE 417

Query: 391 EDNDPV-----EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           E          E  +  + +      Q+   Y I +  + + IVDQHAAHE+++FE+  +
Sbjct: 418 EPKQLELFKVNELLKKENKKDIKIIGQLFDTYWIMEFENSMYIVDQHAAHEKVLFERFMK 477

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
            +N   ITSQ +  P +  L   E  +  +++E L + G + E FG   +AIR IPA  S
Sbjct: 478 RYNDRSITSQMINPPVVFSLTTEEQNVYKDNEEYLAQFGYEIEDFGGGELAIRGIPADFS 537

Query: 506 KKNIPQLLRDIIDEI-IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
           + +  ++  +I+D + ID        + I+N +ATM+C  +++   ++   EM +L+ E+
Sbjct: 538 EADPKEIFTEIMDSLCIDYGKNT--PETIKNRIATMSCKAAVKGNNRLNIKEMEKLMDEL 595

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +  N   C HGRPTFI +   ++EK F R
Sbjct: 596 MELENPYNCPHGRPTFITISKYELEKKFKR 625


>gi|254805223|ref|YP_003083444.1| DNA mismatch repair protein MutL [Neisseria meningitidis alpha14]
 gi|254668765|emb|CBA06657.1| DNA mismatch repair protein MutL [Neisseria meningitidis alpha14]
          Length = 658

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/658 (32%), Positives = 346/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   +    
Sbjct: 63  GIHPDDIKLALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQDGSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSEATEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL- 382
                   ++      K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASDYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 383 ----------------------PSDDPTYSEDNDPVEE---SEATHYQLGIACAQIHQNY 417
                                    +    + + P+ +   S++    LG A AQ+   Y
Sbjct: 419 LYKKTDGIDLELNRLEQARFGNMPSEMPIPKTDAPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++      K+ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGKLQSQRLLIPVTFAASHEECAALSDH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++   +I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRAVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENHI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNVLLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|296314214|ref|ZP_06864155.1| DNA mismatch repair protein MutL [Neisseria polysaccharea ATCC
           43768]
 gi|296839113|gb|EFH23051.1| DNA mismatch repair protein MutL [Neisseria polysaccharea ATCC
           43768]
          Length = 658

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 342/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIEVELAGGGIRLIRVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQNDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPTQS----LHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   +++     K  +     ++ KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFNRASNYPTGNKPDTRNAFGSSGKTAPMPYQSAYAPQQRSLPLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + ++
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPVTFAASHEECAALADY 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  PA+L K ++  L +D+++E     ++ T+++    I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPAMLGKADVVSLAKDVLNEFAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|288940953|ref|YP_003443193.1| DNA mismatch repair protein MutL [Allochromatium vinosum DSM 180]
 gi|288896325|gb|ADC62161.1| DNA mismatch repair protein MutL [Allochromatium vinosum DSM 180]
          Length = 642

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 206/637 (32%), Positives = 354/637 (55%), Gaps = 44/637 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR LS+ ++NQIAAGE++ERP+  IKELIENSLDA  +R+E  +  GG    ++ D+G 
Sbjct: 4   PIRVLSDHLVNQIAAGEVVERPASVIKELIENSLDAGCARLEIDVEQGGIKRLRVRDDGR 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSR-------- 111
           G+  +++ +A+ RH TSK+ +  D   + T GFRGEALPSI +VS LTL SR        
Sbjct: 64  GIARDQLALALARHATSKLFELADLEAVGTLGFRGEALPSIASVSRLTLTSRVRPDSDDA 123

Query: 112 ---PPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
                 ++          ++   RP A   GT VEVRDLFF  PAR  FL++E+ E + +
Sbjct: 124 ASDRAGDSAWEVAVAIDGRLEGPRPAAHPSGTSVEVRDLFFNTPARRKFLRTEKTEFDHV 183

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQST-NGNFPERISQVIGEDFINNAVELNEK 227
             V+RR+A+A P V+          +++        +   R+ +++G  F   ++E++  
Sbjct: 184 DQVVRRLALARPDVALELRHNGRVVHQLPAADGRPESVLARLDRLLGAGFAEQSLEIDVS 243

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
           + ++ L G+   P F+R   +Q + ++NGR ++D+ I   IR A+++ +   R+P  VL 
Sbjct: 244 AVDLRLHGWVRRPAFSRSQPDQQFFYVNGRLIRDRLITHAIRQAFSDFLHQARHPGYVLF 303

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           LE+ PR VDVNVHPAK  +RFR    + +FI +++Q+ + +  +  +   +    +S   
Sbjct: 304 LELPPRLVDVNVHPAKHEVRFRESRQVHDFIQRALQRRLAQGVLGGAESDAPMPETSGMA 363

Query: 348 -------------------DNAPKTHLPKYATSLTNTQ-----------EKLFLQENRLS 377
                              D+A +   P    S   T+            +++     L 
Sbjct: 364 AGAFGGAPDRLAGSPGGGGDSAIQYRSPPPRASGVGTRHPTSALGVGDGRRVYQASLALQ 423

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
              +  +       D +P   +      LG A AQ++  Y+++++ +GL++VD HAAHER
Sbjct: 424 RPAVDAARAARAGGDTEPSVAAATDLPPLGFALAQLNGVYLLAESAEGLILVDIHAAHER 483

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           + +E++++ +++ ++TSQ LL P  + +   E   + E  E L RLG+  +R G + + +
Sbjct: 484 IGYERLKRAWSAGRVTSQPLLVPHSLQVDPREADRLEEQRETLARLGLVLDRLGIDRVVV 543

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           RE+PA+L + ++  L+RD++ ++     +  L++ I+++LAT+AC+GS+R+ R++   EM
Sbjct: 544 REVPALLRQADMDALVRDLLADLAAQGESTRLEEAIDSVLATLACHGSVRANRRLTLDEM 603

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N LLR+ME+     QCNHGRPT+++L  +D+++LF R
Sbjct: 604 NALLRDMERTERIDQCNHGRPTWVRLSHADLDRLFLR 640


>gi|302386430|ref|YP_003822252.1| DNA mismatch repair protein MutL [Clostridium saccharolyticum WM1]
 gi|302197058|gb|ADL04629.1| DNA mismatch repair protein MutL [Clostridium saccharolyticum WM1]
          Length = 639

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 192/641 (29%), Positives = 310/641 (48%), Gaps = 51/641 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L +  IN+IAAGE+IERP+  +KEL+EN++DA ++ V   I  GG S  ++TDN
Sbjct: 1   MPNITVLDQNTINKIAAGEVIERPASVVKELLENAIDARATAVTVEIKEGGTSLIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  EE+ +A  RH TSKI   +D   + + GFRGEAL SI AVS + L+++     T
Sbjct: 61  GCGIPKEEVSLAFLRHSTSKIKSVEDLFTVSSLGFRGEALASIAAVSQVELITKTSIGLT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G +  S+  V    GT    R+LF+  PAR  FLK+   E   + +++ ++A+
Sbjct: 121 GTRYQIDGGQERSMEEVGAPEGTTFIARNLFYNTPARKKFLKTPMTEGAHVAELVEKLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VS  F     N+      S N N  + +  V G +   N +E+  K  E+++ GY 
Sbjct: 181 SHPEVSIRFIQNNQNKLH---TSGNHNLKDIVYTVFGREIAANLLEVTVKKPEVSIHGYI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    FINGR ++   I   I  AY   +   +YP  +L   IDP  +DV
Sbjct: 238 GKPVISRGNRNYENYFINGRYIKSSIISRAIEEAYKPFMMQHKYPFTMLHFSIDPEMLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST----------------------SS 335
           NVHP K  +RFR+  +I + + Q++  A+  K +                          
Sbjct: 298 NVHPTKMELRFRDGEMIYHMVYQAVSSALAHKELIPEVKLEKKAEEKKGFLEKKHEPSPE 357

Query: 336 VLSKKMISSFHQDNA-----------PKTHLPKYAT-----------SLTNTQEKLFLQE 373
              K+ + +  Q  A           PK   P  A+            L      +  Q+
Sbjct: 358 PFEKRRLMAIEQQAAALENKELSIPFPKRLTPPPASLLMERDELGDNWLKPKAPDIDSQQ 417

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                  +   ++ T   D    +  E     +     Q+   Y + +  + L I+DQHA
Sbjct: 418 EVPPVPAVSKQEEKTEQLDLFDGKLLEPKARSMHKLIGQVFDTYWLVEFHEQLYIIDQHA 477

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AHE++++EK      S +  SQ +  P I+ L + E AL+  H +    +G + E FG  
Sbjct: 478 AHEKVLYEKTMGTLKSKEYLSQLVSPPIILTLNQNEEALLKRHLKYFTDIGFEIEPFGGR 537

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
             A+R +PA L      +LL ++ID + +  ++++  D I   +A+++C  +++ G ++ 
Sbjct: 538 EYAVRGVPANLFSIAKKELLIEMIDGLSEDGSSHS-PDIIYEKVASLSCKAAVKGGHRLS 596

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + E N L+ ++    N   C HGRPT I +   ++EK F R
Sbjct: 597 AAEANELIDQLLNLENPYACPHGRPTIISMSKYELEKKFKR 637


>gi|172059745|ref|YP_001807397.1| DNA mismatch repair protein [Burkholderia ambifaria MC40-6]
 gi|171992262|gb|ACB63181.1| DNA mismatch repair protein MutL [Burkholderia ambifaria MC40-6]
          Length = 661

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 200/644 (31%), Positives = 331/644 (51%), Gaps = 59/644 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA +S +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGASTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADVAHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DATTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLP- 356
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           +S      A   + P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAQLSPAPGGPASFLNTPL 375

Query: 357 -------------KYATSLTNTQEKLFLQENRLS-------------------------- 377
                           +S +++    ++++ R++                          
Sbjct: 376 GLGAATGTGGSGFSSPSSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDTGAGT 435

Query: 378 -------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
                   +D   +          P+  +      LG A  QIH  Y+++Q   GLVIVD
Sbjct: 436 PDGTTVIAHDSASAPTTPPGFVASPLAATAHDEQPLGFALGQIHGIYVLAQNAHGLVIVD 495

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            HAAHER+++E+ +       I  Q+LL P  +     E   + E  + L  LG      
Sbjct: 496 MHAAHERILYEQFKNALADRTIAVQSLLLPISMTATPVEIGTVEEERDTLESLGFDLAVL 555

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
            P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R
Sbjct: 556 SPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRANR 615

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 RLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 659


>gi|78485428|ref|YP_391353.1| DNA mismatch repair protein MutL [Thiomicrospira crunogena XCL-2]
 gi|78363714|gb|ABB41679.1| DNA mismatch repair protein MutL [Thiomicrospira crunogena XCL-2]
          Length = 630

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 210/614 (34%), Positives = 352/614 (57%), Gaps = 22/614 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L   + +QIAAGE++ERP+  +KEL+EN+LD+ ++++E  I  GG+    + DNG G
Sbjct: 15  ISLLPSHLADQIAAGEVVERPASVVKELLENALDSGATQIEIQIEEGGEKLISVIDNGMG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++ +AV RH TSKI    D + + T GFRGEAL SI +VS LTL S+    +   Q
Sbjct: 75  IRQSQLMLAVSRHATSKIHTAQDLAAVATLGFRGEALASISSVSRLTLTSKFQGESAAWQ 134

Query: 121 IAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     + S   P A   GT VEV+DLFF  PAR  FL++ + E   I  +++R+ ++ 
Sbjct: 135 LSGEGEGRWSEPTPTAHPQGTHVEVKDLFFNTPARKKFLRAARTEFMHIDQLVKRVMLSR 194

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S      +    +++    +    +R+ Q++G  F++ ++ELN ++ +I L G+ G 
Sbjct: 195 PEISMKLVHNQKVVRQVHAAHDDAALKQRLKQLMGTPFVDQSLELNFEAQDIQLSGWVGQ 254

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            TFNR   +  Y+F+NGR V+D+ +   ++ AYA+ +  GR+P  +L L I    VDVNV
Sbjct: 255 ATFNRSQTDMQYLFVNGRIVRDRLLSYAVKQAYADVLYHGRHPAYLLFLNIPHDLVDVNV 314

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTHLPK 357
           HPAK  +RF N   + +F+ +S+++A+ +     S+  +  +I S  F  +++ ++H   
Sbjct: 315 HPAKYEVRFANGRWVYDFLRRSVREAVTQPVGVASNPNNAALIPSNVFSGNHSGESHQMD 374

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPS--------DDPTYSEDNDPVEESEATHYQL--- 406
              S +  Q ++       S   +  S        D  T     +   E++A        
Sbjct: 375 SQVSQSAMQFQMPSSSASGSGMGVSESVPYYAMAPDAETVESLKNRFHEADAYSQNSTPI 434

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK-----MRQDFNSTKITSQTLLTP 460
            G A AQIH  +I+++   GLV+VD HAAHER+++E+     M+Q +   ++ SQ LL P
Sbjct: 435 LGYAKAQIHGVFILAENEKGLVLVDMHAAHERIVYERIVYERMKQQWQQDRLISQPLLVP 494

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            ++ L   +  +   + E+  +LG +AE FGP  +    +P++LSK +IP+L+ D+I ++
Sbjct: 495 IVVSLESSQVQVWEAYQEEFQKLGFEAEAFGPEQLKFTMVPSLLSKSDIPRLINDMIADL 554

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
             +  T  + ++I  IL+TMAC+GS+R+ R +   EMN LLR+ME   +S+QCNHGRPT+
Sbjct: 555 AVAGQTQLVDEKINAILSTMACHGSVRANRHLTLDEMNALLRDMEATESSAQCNHGRPTW 614

Query: 581 IKLKLSDIEKLFGR 594
           ++L +  ++ LF R
Sbjct: 615 VQLSMEQLDGLFMR 628


>gi|206561596|ref|YP_002232361.1| DNA mismatch repair protein [Burkholderia cenocepacia J2315]
 gi|198037638|emb|CAR53580.1| putative DNA mismatch repair protein [Burkholderia cenocepacia
           J2315]
          Length = 665

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 198/648 (30%), Positives = 326/648 (50%), Gaps = 63/648 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA +S +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGASTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELALALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADAAHAMK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGATGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDSFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLPK 357
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           +S   +  A     P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAQLSPVPRGPASFLDTPL 375

Query: 358 YATSLTNT-----------------QEKLFLQENRLSTNDLLPSDDPTYSE--------- 391
             +    T                     ++++ R++   L  +      +         
Sbjct: 376 GQSQGHATGSGGSGFSSPSSSSSSSSGNTWMRQARMTQGTLPVAQPLALYDALFGRKDTG 435

Query: 392 -------------------------DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                                       P+  +      LG A  QIH  Y+++Q   GL
Sbjct: 436 AGTPDGTTTLARDSADAPIAPLSGFTASPIATTTHDEQPLGFALGQIHGIYVLAQNAHGL 495

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           VIVD HAAHER+++E+ +       +  Q LL P  +     E   + E  + L  LG  
Sbjct: 496 VIVDMHAAHERILYEQFKNALADRSVAVQALLLPISMTATPVEIGTVEEERDTLESLGFD 555

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
                P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++
Sbjct: 556 LAVLSPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAV 615

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 RANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 663


>gi|83594278|ref|YP_428030.1| DNA mismatch repair protein [Rhodospirillum rubrum ATCC 11170]
 gi|123766944|sp|Q2RQ52|MUTL_RHORT RecName: Full=DNA mismatch repair protein mutL
 gi|83577192|gb|ABC23743.1| DNA mismatch repair protein MutL [Rhodospirillum rubrum ATCC 11170]
          Length = 629

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 237/630 (37%), Positives = 358/630 (56%), Gaps = 38/630 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   ++N+IAAGE++ERP+ A+KEL+EN++DA +SR++  +  GG++   + D+G
Sbjct: 1   MTIRLLPPVLVNRIAAGEVVERPASAVKELVENAIDAGASRIDITMTDGGRARILVVDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM   E+ +AV+RH TSK+  DD  +IHT GFRGEALPSIG+V+ LTL SR        
Sbjct: 61  RGMDPGELSLAVERHATSKLPGDDLLDIHTLGFRGEALPSIGSVARLTLTSRAAGAGDAW 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G       P +   GT VEVRDLF+  PARL FLK+ + E     DV+ R+A+A+
Sbjct: 121 ALTVEGGAKGEPEPASHPQGTRVEVRDLFYATPARLKFLKAPRTEQMHAVDVVHRLAMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQG 235
           P V FT S     R ++      G   E    R+  ++G +F +NA+ +  +   I L G
Sbjct: 181 PAVGFTLS--DGTRQQIRLSGAQGELFEARLTRLGAILGREFSDNAIAIEAEREGIRLTG 238

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +  +PT+N+  +   Y+F+NGR V+DK +   +R AY + +   R  V+ L L++ P  V
Sbjct: 239 HAALPTYNKATSAGQYLFVNGRPVRDKLLHGAVRGAYQDVLAHDRNAVLALYLDLPPEMV 298

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTH 354
           DVNVHPAK+ +RFR+P ++R  II +++ A+   G   SS +S   + +      +    
Sbjct: 299 DVNVHPAKAEVRFRDPGLVRGLIIGALRHALAAAGHRASSTVSLAALGALRPAQGSGAPA 358

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED---------------------- 392
           LP  A           L+E R +     P+  P                           
Sbjct: 359 LPWGAGGYGGGASHPGLEERRSAYAAQAPAGTPDPWAGRGMGAGGGSGQAAMAWLAGAPP 418

Query: 393 -------NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                        + A  + LG A  QIH  YII+QT DG+VIVDQHAAHERL+ E+M+ 
Sbjct: 419 AAPRLAGEPEAPPTGAEDFPLGAARGQIHDTYIIAQTRDGVVIVDQHAAHERLVMERMKA 478

Query: 446 DFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
                  +  Q LL PE+++L E     +     +L +LG+  E FGP A+ +RE+PA+L
Sbjct: 479 ALAERGEVARQILLLPEVVELDEPGAVRVATAAAELAKLGLVVEGFGPGAVVVREVPALL 538

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              ++  L+ D+ + + +  T   L+DR+ +++ATMAC+GS+R+GR+++  EMN LLR+M
Sbjct: 539 GDTDVKGLVADLAEGLAEWGTAQALEDRLGDVVATMACHGSVRAGRRLRIEEMNALLRDM 598

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E+ P + QCNHGRPT+++L+L DIE+LFGR
Sbjct: 599 ERTPRAGQCNHGRPTYVELRLGDIERLFGR 628


>gi|161525790|ref|YP_001580802.1| DNA mismatch repair protein [Burkholderia multivorans ATCC 17616]
 gi|189349489|ref|YP_001945117.1| DNA mismatch repair protein [Burkholderia multivorans ATCC 17616]
 gi|160343219|gb|ABX16305.1| DNA mismatch repair protein MutL [Burkholderia multivorans ATCC
           17616]
 gi|189333511|dbj|BAG42581.1| DNA mismatch repair protein [Burkholderia multivorans ATCC 17616]
          Length = 662

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 200/647 (30%), Positives = 329/647 (50%), Gaps = 64/647 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 83  IPPNELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMYITSRTADAAHATR 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCVEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +     + H + AP+      +T
Sbjct: 316 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGH--AAHLEPAPRGPASFLST 373

Query: 361 SLTNTQEKL-------------------FLQENRLSTNDLL------------------- 382
            L  +  +                    +L++ R++   L                    
Sbjct: 374 PLGQSPNQPASTGGSGFSSPSSSAPGSTWLRQARMTQGTLPVAQPLALYDALFGRKDTSA 433

Query: 383 -----------PSDDPTYSEDNDPVEESEATHYQLGIACA----QIHQNYIISQTTDGLV 427
                       + D + +          A              QIH  Y+++Q   GLV
Sbjct: 434 ATPDATTATAGDAPDDSAAPLAGFAALPSAASMHDEQPLGFALGQIHGIYVLAQNAHGLV 493

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           IVD HAAHER+++E+ +       +  Q+LL P  +     E   + E  + L  LG   
Sbjct: 494 IVDMHAAHERILYEQFKNALADRTVAVQSLLLPVSMTATPVEIGTVEEERDTLEALGFDL 553

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
               P ++AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R
Sbjct: 554 AVLSPTSLAIRAVPALLKDADLQALARAVLADLHAFGGSRVLTERQHELLGTLACHHAVR 613

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + R++   EMN LLR+ME    + QCNHGRPT+ +L LSD+++LF R
Sbjct: 614 ANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLSDLDRLFMR 660


>gi|308389547|gb|ADO31867.1| DNA mismatch repair protein [Neisseria meningitidis alpha710]
          Length = 658

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 216/658 (32%), Positives = 344/658 (52%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIGLALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E    T ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCTTMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS     PERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPTQS----LPERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +     ++ KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSASDYPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+                      G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELNRLEQARFGNMPSETPIPKTDTPLSDGLPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM RQ   + K+ SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRRENGKLQSQRLLIPSTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++    I
Sbjct: 539 AEALAGFGLELSDMGGNTLAVRTVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|167758189|ref|ZP_02430316.1| hypothetical protein CLOSCI_00527 [Clostridium scindens ATCC 35704]
 gi|167664086|gb|EDS08216.1| hypothetical protein CLOSCI_00527 [Clostridium scindens ATCC 35704]
          Length = 652

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 190/651 (29%), Positives = 312/651 (47%), Gaps = 61/651 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L    I++IAAGE+IERP+  +KEL+EN++DA ++ + T I  GG S  +I DNG 
Sbjct: 3   KIQVLDPVTIDKIAAGEVIERPASVVKELVENAIDAGATAIVTEIEEGGISMIRIADNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM + ++P A  RH TSKI   +D  +I + GFRGEAL SI AVS + ++++      G 
Sbjct: 63  GMDASDVPNAFLRHSTSKIRTVEDLVHIGSLGFRGEALSSIAAVSQVEMITKTKDQVLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I+G K   +       GT   +R LF+  PAR  FLK+   E + + D++ RMA+++
Sbjct: 123 RYRIAGGKEEELDETGARDGTTFLIRQLFYNTPARRKFLKTPMTEASHVGDLLTRMALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F     ++      S NGN  + I  V G +   N +  + +S  + ++G+ G 
Sbjct: 183 PEISFQFINNGQSKLH---TSGNGNLKDVIYHVYGREIAANLLAADYESPGLKIRGFLGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    FINGR V+   I   I  AY +     +YP VVL +EID   VDVNV
Sbjct: 240 PLISRGNRNFENYFINGRYVKSSIISKAIEDAYKDFTMQHKYPFVVLHIEIDGEHVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH----- 354
           HP K  +RF N   + N I  ++   ++ + +     +     ++  +      H     
Sbjct: 300 HPTKMELRFNNQQEVYNSIYAAVDHGLHAEELIPHVEVDAPKAAAPMKQEGGAPHAAQKK 359

Query: 355 --------------LPKYATSLTNTQEKL------------------------------- 369
                          P    S+   +E+                                
Sbjct: 360 DNPVVPDRTTSVQPAPSAKKSVPAPEERTLDYFMQKMKERVAAYHAQQNQEAPKKAPDVK 419

Query: 370 ----FLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNYIISQTT 423
                 ++ R + +D +       ++  +  EE+  E           Q+ + Y + +  
Sbjct: 420 VSAQPSEDRREAPSDRVCETPEYAAQQLNLFEENLVERKVQAEYKIIGQVFETYWLVEFN 479

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHAAHER+++EK  +   + + TSQ +  P ++DL   E  L+ ++ +   R+
Sbjct: 480 DSLYIIDQHAAHERVLYEKTLKSMKTREFTSQFISPPIVLDLSMQEAELLNQYMDQFTRI 539

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + E FG  + A+R +P  L       LL  ++D + D  +     D I+  +A+M+C 
Sbjct: 540 GFEIEEFGQESYAVRAVPGNLFGIAKKDLLLQMLDGLSDEVSRNLSPDMIDEKVASMSCK 599

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +++   K+ + E++ L+ E+    N   C HGRPT I +   ++EK F R
Sbjct: 600 AAVKGNMKLSATEVDSLIGELLTLENPYHCPHGRPTIIAMTKRELEKKFKR 650


>gi|293399028|ref|ZP_06643193.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae F62]
 gi|291610442|gb|EFF39552.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae F62]
          Length = 654

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/654 (32%), Positives = 338/654 (51%), Gaps = 65/654 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DGENLFDSASNHPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATH-----------YQLGIACAQIHQNYIISQ 421
                    L       +   +   ES   +             LG A AQ+   YI++Q
Sbjct: 419 LYKKTDNIDLELSQFEQARFGNMPSESSTNNVSDGIGQASELPPLGFAIAQLLGIYILAQ 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H E L
Sbjct: 479 AEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL 538

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      ILATM
Sbjct: 539 AGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATM 598

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 SCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 652


>gi|240123593|ref|ZP_04736549.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID332]
 gi|268682221|ref|ZP_06149083.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID332]
 gi|268622505|gb|EEZ54905.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID332]
          Length = 654

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/654 (32%), Positives = 338/654 (51%), Gaps = 65/654 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DSENLFDSASNHPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATH-----------YQLGIACAQIHQNYIISQ 421
                    L       +   +   ES   +             LG A AQ+   YI++Q
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSESSTNNVSDGIGQASELPPLGFAIAQLLGIYILAQ 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H E L
Sbjct: 479 AEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL 538

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      ILATM
Sbjct: 539 AGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATM 598

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 SCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 652


>gi|157827812|ref|YP_001496876.1| DNA mismatch repair protein [Rickettsia bellii OSU 85-389]
 gi|166232103|sp|A8GY89|MUTL_RICB8 RecName: Full=DNA mismatch repair protein mutL
 gi|157803116|gb|ABV79839.1| DNA mismatch repair protein [Rickettsia bellii OSU 85-389]
          Length = 611

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/610 (40%), Positives = 372/610 (60%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKLLSESTINRIAAGEVIERPASVVKELVENAVDAGSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+ + DF NIHTFGFRGEALPSI A+S + + S+   N    
Sbjct: 61  VGMTDKELEIAVERHTTSKLDETDFLNIHTFGFRGEALPSIAAISKMLITSKKRDNQKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     + P   N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 121 QIKLIGGDEKQIAPAIHNEGTKIEIRDLFFATPARLKFLRTDKTELAATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQS--TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P++SF+ +       K+  Q+     N  +RI  VIGEDFI NA  ++ KS + ++ GYT
Sbjct: 181 PEISFSLTHDGKTLLKLKGQNKDAENNLKQRIIDVIGEDFIKNASYIDFKSPDFSIYGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SIPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYMLRDRYPLCAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL-- 355
           NVHPAK+ +RF +P  +RN +I SI+ A++ K    S+ ++   I  F      K     
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIDSIKNALSNKSHIASTTIASSAIELFKNPFVNKEPAIS 360

Query: 356 ---------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
                     KY  + + T  K     +     D LP        +     E + +    
Sbjct: 361 KPLNVNSKPSKYRPATSPTVPKYTPNNSCQKLIDTLPHARIEQEVEQRIQNEPQKSSQYR 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  Y+ISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYVISQTEDSIVITDQHAAHERLGYEKIKNYIKNEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E    ++ E+ + L +LG+  E+FG  +I + EIP IL   N+ +L++D+ D + +  
Sbjct: 481 PDEKRADILYENKDKLSKLGLSLEKFGEKSIIVTEIPNILGDINVQKLIQDLADHLAECG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LK
Sbjct: 541 ENIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPFSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|240128296|ref|ZP_04740957.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268686693|ref|ZP_06153555.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268626977|gb|EEZ59377.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 654

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 212/654 (32%), Positives = 338/654 (51%), Gaps = 65/654 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKS+  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSKNTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DSENLFDSASNHPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATH-----------YQLGIACAQIHQNYIISQ 421
                    L       +   +   ES   +             LG A AQ+   YI++Q
Sbjct: 419 LYKKTDNIDLELSQFEQARFGNMPSESSTNNVSDGIGQASELPPLGFAIAQLLGIYILAQ 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H E L
Sbjct: 479 AEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL 538

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      ILATM
Sbjct: 539 AGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATM 598

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 SCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 652


>gi|294669657|ref|ZP_06734724.1| hypothetical protein NEIELOOT_01558 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308570|gb|EFE49813.1| hypothetical protein NEIELOOT_01558 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 638

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 221/638 (34%), Positives = 332/638 (52%), Gaps = 49/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +E  + GGG     + DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGAAEIEVELDGGGIKRLLVRDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+ RH TSKI+   D  ++ + GFRGE L SI +VS LTL SR P +    
Sbjct: 63  GIHADDLPLALSRHATSKIASLTDLEHVSSMGFRGEGLASIASVSRLTLTSRTPGSAHAH 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I      +S V   A   GT VEV DLFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 EIRAEDGILSPVAAAAHPEGTTVEVADLFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+ +F+      + +K   QS      ER + ++G DF   ++ +      + L G    
Sbjct: 183 PETAFSLKRDGKSVFKYPPQS----LEERAAAILGSDFQTASLPVEGGGGSMRLYGLIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G   Q Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTGQQYCFVNRRFVRDKVMLHAVKQAYRDVLHQALAPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKG----------------------ISTSSVL 337
           HP K+ IRFRN   +   +  ++ KA+                             S   
Sbjct: 299 HPTKTEIRFRNSQAVHQLVFHTLDKALAGTRADRTESVGNAGEVLHKMMGLAEERPSENH 358

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL--------------- 382
                       A KT    Y+ +    Q  L L E+R + +                  
Sbjct: 359 GGSHAPFSDGLQAGKTAPVSYSAARVPQQRSLSLNESRRAIDTYAELYRRDDELAQLEHE 418

Query: 383 -PSDDPTYSEDNDPVEESEA----THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                   +  +D  +E+        Y LG A AQ+   YI++Q  D L++VD HAA ER
Sbjct: 419 RFGGAIAQTAVSDGRDEAHGGGGGNAYPLGFAIAQLLGIYILAQAEDSLLLVDMHAAAER 478

Query: 438 LIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           + +EKM++       + SQ+LL P       GE A + +  ++L R G+     G N IA
Sbjct: 479 VNYEKMKRQRGEQGRLNSQSLLIPVTFSAGHGEIAALADFGDELRRFGLDLSPIGENRIA 538

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R +P +L K ++ QL RD++ E  +   +  ++ R   ILATM+C+GSIR+GRK+   E
Sbjct: 539 VRAVPQMLGKSDVEQLARDMLREFAEVGASQAVEARENRILATMSCHGSIRAGRKLTLPE 598

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR+ME+ P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 MNALLRDMEQTPRSNQCNHGRPTWVKLTLKELDALFLR 636


>gi|159042919|ref|YP_001531713.1| DNA mismatch repair protein [Dinoroseobacter shibae DFL 12]
 gi|157910679|gb|ABV92112.1| DNA mismatch repair protein MutL [Dinoroseobacter shibae DFL 12]
          Length = 621

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 256/601 (42%), Positives = 373/601 (62%), Gaps = 10/601 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE+IERP+ A+KEL+EN+LDA++ ++E   A GGK+  ++TD+G G
Sbjct: 21  IRQLDEAAINRIAAGEVIERPASAVKELVENALDAQARQIEIAYADGGKTLLRVTDDGIG 80

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + + ++P+A+ RH TSKI   D  NIHTFGFRGEALPS+GAV  LT+          A++
Sbjct: 81  IAAGDLPLALARHATSKIDGADLLNIHTFGFRGEALPSLGAVGRLTIA-SRAAGAEAAEV 139

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G ++  VRP A+N GT+V +RDLF   PARL FL+S++ E   I +V+RR+A+A P 
Sbjct: 140 TVEGGRMGPVRPAALNRGTVVTLRDLFSATPARLKFLRSDRAEVQAIGEVVRRLAMAEPS 199

Query: 182 VSFT---FSTIKSNRYKMNFQSTNGNF----PERISQVIGEDFINNAVELNEKSNEITLQ 234
           V FT    S     R         G+       R+ +V+G +F  NA+ +  +   + L 
Sbjct: 200 VGFTLRDVSGGGEGRVTFRVAPEQGDLFDALHRRLGRVLGSEFAENALRIEGEREGLRLS 259

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY  +PT++RG A   ++F+NGR V+DK ++  +R AYA+ +   R+P  VL ++  P +
Sbjct: 260 GYAALPTYSRGAAVAQFLFVNGRPVRDKLLVGALRGAYADFLSRDRHPAAVLFVDCPPER 319

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHPAKS +RFR P + R  I+ +++ A+ + G   SS ++   + +F   +A  + 
Sbjct: 320 VDVNVHPAKSEVRFREPGVARGLIVTALRHALAEAGHRASSTVADATLGAFRAPDAVGSG 379

Query: 355 LPKYATSLTNTQE-KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
              Y     +              T           S   +P E  EA    LG A AQ+
Sbjct: 380 ARIYQMDRPSAAALGRSTAWQAPETAAQGFGFAEAPSARVEPAETVEAIARPLGAARAQL 439

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+NYI++QT  G+V+VDQHAAHERL++E+++       + SQ LL PEI+++ E +   +
Sbjct: 440 HENYIVAQTETGMVLVDQHAAHERLVYERLKALMAENGVPSQALLIPEIVEMSEADARTL 499

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
           ++  E+L  LG++ E FGP A+A+RE PA+L       LLRDI+DE+ D   T  LQ RI
Sbjct: 500 LDRSEELAALGLRIEPFGPGAVAVRETPALLGPVKAEALLRDILDELSDLGQTDALQARI 559

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E IL+ MAC+GS+RSGR+M   EMN LLR+ME  P+S QCNHGRPT+++LKL+DIE+LFG
Sbjct: 560 EAILSRMACHGSVRSGRRMSGEEMNALLRQMEATPHSGQCNHGRPTYVELKLADIERLFG 619

Query: 594 R 594
           R
Sbjct: 620 R 620


>gi|87200143|ref|YP_497400.1| DNA mismatch repair protein MutL [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135824|gb|ABD26566.1| DNA mismatch repair protein MutL [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 603

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/605 (38%), Positives = 358/605 (59%), Gaps = 14/605 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ IR+L E +IN+IAAGE++ERP+ A+KEL+EN++DA SS V   ++ GG +  +++D+
Sbjct: 1   MRVIRRLPETLINRIAAGEVVERPASALKELVENAIDAGSSHVHVRLSEGGLAMIEVSDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G GM  +EI +A++RH TSK+ D+    + T GFRGEALPSI +V+ +T+ SRP     G
Sbjct: 61  GCGMRPDEIALALERHATSKLPDEAIELVETLGFRGEALPSIASVARVTIESRPHGTAEG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  +    + +  P A+ PGT V V  LF  IPAR  FL+S + E    +DV+RR+A+A
Sbjct: 121 WKRVVDNGALVAEGPAALPPGTRVRVEHLFEKIPARRKFLRSPRSEWAAASDVVRRLAMA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V FT          +    T      R++Q++  +   N+VE++    +  L G  G
Sbjct: 181 RPDVGFTLEHDGRRALHVQAGET---LEARVAQLVARELAGNSVEVDLVRGDFHLTGIAG 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTFNRG A+  Y+F+NGR V+D+ ++  +R AYA+ +   R+ V+ L L++   +VDVN
Sbjct: 238 LPTFNRGVADHQYLFVNGRPVKDRLLIGAVRGAYADMLARDRHAVLALFLQVPASEVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAKS +RFR+P ++R  ++  ++ A++     ++   S   ++++  +          
Sbjct: 298 VHPAKSEVRFRDPALVRGMVVSGLRHALSTGDQRSAQAPSASAMAAWQAEPIAPPPPSSP 357

Query: 359 ATSLTNTQ-EKLFLQENRLSTNDLLP-------SDDPTYSEDNDPVEESEATHYQLGIAC 410
           ++    +   + +  E R+S                P+   +       +A  + LG+A 
Sbjct: 358 SSDWQGSIFSQQWKPEPRVSEAGQAWRGYEQAIMAPPSARAEPAAQPVVDAAQHPLGVAR 417

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI-TSQTLLTPEIIDLLEGE 469
            QI   YI+++  DGLVIVDQHAAHERL+ E++R       +  SQ LL PE+++L E  
Sbjct: 418 GQISNTYIVAEAEDGLVIVDQHAAHERLVLERLRAAGAGQGVAPSQALLIPEVVELDETA 477

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           C  + E  E L   G+  ERFGPNA+ +R IPA L+K +  +L+ D+ D++        L
Sbjct: 478 CDRLEEASEKLAEFGLALERFGPNAVLVRAIPAALAKGDPARLVADVADDLAHHGDALLL 537

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            ++++ +LATMAC+GS+R+GR +   EMN LLREME  P S QCNHGRPT++KL   DIE
Sbjct: 538 GEKLDLVLATMACHGSVRAGRTLSVAEMNALLREMEVTPRSGQCNHGRPTWVKLAHGDIE 597

Query: 590 KLFGR 594
           KLFGR
Sbjct: 598 KLFGR 602


>gi|33598139|ref|NP_885782.1| DNA mismatch repair protein [Bordetella parapertussis 12822]
 gi|81836516|sp|Q7W4N5|MUTL_BORPA RecName: Full=DNA mismatch repair protein mutL
 gi|33566697|emb|CAE38907.1| DNA mismatch repair protein [Bordetella parapertussis]
          Length = 629

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 203/629 (32%), Positives = 337/629 (53%), Gaps = 43/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+  +KE++EN++DA +  +E  + GGG     +TD+G 
Sbjct: 6   PIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A+ RH TSKI   D+  ++ + GFRGEAL SI +V+ LT++SR        
Sbjct: 66  GIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P +  PGT ++VR LF  +PAR  FL+SE  E     D + R+A+A+
Sbjct: 126 QIDGGSLQV---SPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F        + +        +  +RI  V+G +F+++ + +   +  I L G    
Sbjct: 183 PEVAFRLFHHDRAQRQWLP----ADHGQRIRDVLGAEFVDHVLPVQAAAGAIALMGMVTR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R+AYA+ +   R P  VL L+IDP  VDVNV
Sbjct: 239 PTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---------------------- 337
           HPAK  +RFR+   +  F+ Q + + + + G + +                         
Sbjct: 299 HPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDAAYAGEPAAAAPG 358

Query: 338 ---SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL---------PSD 385
               +    + +       +    A   T    +L  +   +   D            + 
Sbjct: 359 LAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAP 418

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
             T            A  + LG A AQ+H  YI++Q + GLV+VD HAAHER+++E++++
Sbjct: 419 AATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKR 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
             +   +  Q LL P +    E + AL+ EH+  L+ LG +    GP +IA+R +PA+L+
Sbjct: 479 ALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLA 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           + +I  L R ++ ++     +  L ++   +L+TMAC+GS+R+ R++   EMN LLR+ME
Sbjct: 539 RGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQME 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               + QCNHGRPT+++  ++D++KLF R
Sbjct: 599 ITERADQCNHGRPTWVQWSVNDLDKLFLR 627


>gi|298676065|ref|YP_003727815.1| DNA mismatch repair protein MutL [Methanohalobium evestigatum
           Z-7303]
 gi|298289053|gb|ADI75019.1| DNA mismatch repair protein MutL [Methanohalobium evestigatum
           Z-7303]
          Length = 626

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 188/623 (30%), Positives = 308/623 (49%), Gaps = 36/623 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE+IERP+  +KELIENS+DA ++ ++  +  GG     ++DNG 
Sbjct: 5   RIHILDDSTINKIAAGEVIERPASVVKELIENSIDAGATEIKIDVKEGGAKKITVSDNGT 64

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++ +A  +H TSKI   +D  +  T GFRGEAL SI +VS + +++R   +  G 
Sbjct: 65  GMSYDDVRLAFTKHATSKIWKLEDLYSTTTLGFRGEALSSIASVSKVEMITRQKDDLAGT 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +  E I+ V  +  + GT V V DLF+  PAR  +LKS++ E   ITD + + A+  
Sbjct: 125 MIVVQPEGINDVSEIGASAGTSVNVYDLFYNTPARRKYLKSKRTELAHITDTVSKQALGN 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             VSFT ++       +    ++GN  + I  V G D   + + ++ +S  I + GY   
Sbjct: 185 INVSFTLTSNGR---NVLHTPSSGNLFDNIVHVYGRDVARSMIPVDHESELIRVSGYISK 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R   +    FIN R+V  + I + +RT Y   +P GRYP  VL ++I+P +VD+NV
Sbjct: 242 PEFTRSGTDFQSFFINNRSVSSRAISNALRTGYYTLLPKGRYPAAVLNIQINPEEVDINV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------- 344
           HP KS++R  +   I + I +S++ A+ +  +  S    +   S                
Sbjct: 302 HPRKSHVRLSHEQDIMDAISESVKTALGQAELIPSVNKKENDKSQETSVQLNIKEVGNKS 361

Query: 345 -FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
              +DN  +    +Y TS T  ++ L    N  S  D       +        E  E+  
Sbjct: 362 QVSKDNIIREKPAEYKTSKTGEKKHLKSATNVSSIKDTEKRLKRSERLTTAENENKESQI 421

Query: 404 YQLG------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            +                  Q+ + YI+++    LV++DQHAAHER+++E +R   NS  
Sbjct: 422 PKQSSGIQLQSESSNIKVLGQVDELYIVAEMDSRLVLIDQHAAHERIMYEHIR---NSKN 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              Q L++P  ++L   E  L+ E+   L   G     FGP+   I  +P I      P 
Sbjct: 479 PDWQELISPITLELSIKEKVLMEEYIPYLEEFGFAISEFGPSTYIITSVPVIFGNIEKPD 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
            L D+I EI+ +          + +  T+AC  +I++G    + +M  L+ +++   N  
Sbjct: 539 TLHDMISEILSAGRIKNDVGIYDYMCKTIACRSAIKAGHICNTEQMENLIVQLKNTQNPY 598

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRPT +     ++ ++F R
Sbjct: 599 TCPHGRPTMLSFTRDELYRMFKR 621


>gi|294084710|ref|YP_003551468.1| DNA mismatch repair enzyme [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664283|gb|ADE39384.1| DNA mismatch repair enzyme [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 613

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 222/609 (36%), Positives = 363/609 (59%), Gaps = 16/609 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L ++++NQIAAGE++ERP+ A+KEL+EN+LDA + ++   +  GG     +TD+G 
Sbjct: 4   RIRQLPDRLVNQIAAGEVVERPASALKELVENALDAGAGKISITLKRGGIDEIIVTDDGS 63

Query: 62  GMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GM+ ++I +AVQRH TSK+ DD   +I   GFRGEALPSIGAVS L+L S     +   +
Sbjct: 64  GMSLDDIKLAVQRHATSKLPDDNLVHIKALGFRGEALPSIGAVSRLSLTSIMADMDHAWR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +    +    P A+  G+++ V  LF  +PARL FLK+E+ E     D+++R+A+A+P
Sbjct: 124 LVVDAGHVHDPEPAALKQGSMIAVNQLFKAVPARLKFLKTERTEQGQCVDMVKRLAMAWP 183

Query: 181 KVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            V+F  S    +  +++           R+S ++G+ F + A E++   + ITL G  G+
Sbjct: 184 TVAFDLSNDGRSLIRLDACLPGAAGLKRRLSAIMGQSFADEAAEMDAVRDRITLTGLVGL 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT NR      ++F+NGR + D+ +L  +R  Y +T+P GR+P+  L + + P  VDVNV
Sbjct: 244 PTMNRPTTGHVFLFVNGRPINDRSLLGAVRAGYGDTLPRGRHPMCALFISLPPEDVDVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH----- 354
           HPAK+ +RF++   +R  ++  I+  +   GI  +S   ++ ++     ++  +      
Sbjct: 304 HPAKAEVRFKDAAAVRGLLVGGIRARLEDAGIQATSEGGQQALARLSSSSSSSSSSSSFS 363

Query: 355 ------LPKYATSLTNTQEKLFLQENRLST---NDLLPSDDPTYSEDNDPVEESEATHYQ 405
                       S   +  +   Q    ++           P   + +    +  A H  
Sbjct: 364 GFTAGGSGARGISHVASGPRAHYQPAPPASAHMWQSPVEAPPAARQIDINEADESARHNL 423

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           LG A AQ+H+ YI+++T DG+ I+DQHAAHERL+ E+M+     T + SQ LL PE+I++
Sbjct: 424 LGAAKAQLHKTYIVAETEDGIAIIDQHAAHERLVMERMKAAMAETGVPSQALLLPEVINM 483

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            E  C  +++  + L ++G+  E FG  A+ +R++PA+L   N+ QL++DI +E+I+   
Sbjct: 484 QEHHCEAVLDAADMLGKMGLTVENFGVGAVVVRDVPAMLGNPNVVQLVQDIAEELIELGD 543

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           + +L+DRI ++LAT++C+GS+R+GR +   EMN LLREME  P S QCNHGRPT++ L L
Sbjct: 544 STSLEDRINHVLATVSCHGSVRAGRILNGDEMNALLREMEVTPRSGQCNHGRPTWVSLSL 603

Query: 586 SDIEKLFGR 594
           ++IE LFGR
Sbjct: 604 TEIETLFGR 612


>gi|260440446|ref|ZP_05794262.1| DNA mismatch repair protein [Neisseria gonorrhoeae DGI2]
 gi|291043745|ref|ZP_06569461.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae DGI2]
 gi|291012208|gb|EFE04197.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae DGI2]
          Length = 658

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 337/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DSENLFDSASNHPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
                    L       +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPAHKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 656


>gi|240014088|ref|ZP_04721001.1| DNA mismatch repair protein [Neisseria gonorrhoeae DGI18]
 gi|240016522|ref|ZP_04723062.1| DNA mismatch repair protein [Neisseria gonorrhoeae FA6140]
 gi|240115743|ref|ZP_04729805.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID18]
 gi|240121649|ref|ZP_04734611.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID24-1]
 gi|268601421|ref|ZP_06135588.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID18]
 gi|268585552|gb|EEZ50228.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID18]
          Length = 654

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 215/654 (32%), Positives = 340/654 (51%), Gaps = 65/654 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------KGISTSSVLSKK 340
           HP K+ IRFR+   +   +  ++ KA+                      G++ + + S+ 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 341 MISSFHQDNAP-----------------KTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
              +     +                  KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DGENLFDSASNHPTGNKPDIRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATH-----------YQLGIACAQIHQNYIISQ 421
                    L       +   +   ES   +             LG A AQ+   YI++Q
Sbjct: 419 LYKKTDNIDLELSQFEQARFGNMPSESSTNNVSDGIGQASELPPLGFAIAQLLGIYILAQ 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H E L
Sbjct: 479 AEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL 538

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      ILATM
Sbjct: 539 AGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATM 598

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 SCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 652


>gi|59801161|ref|YP_207873.1| DNA mismatch repair protein [Neisseria gonorrhoeae FA 1090]
 gi|240118039|ref|ZP_04732101.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID1]
 gi|268603752|ref|ZP_06137919.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID1]
 gi|81311203|sp|Q5F8M6|MUTL_NEIG1 RecName: Full=DNA mismatch repair protein mutL
 gi|59718056|gb|AAW89461.1| putative DNA mismatch repair protein [Neisseria gonorrhoeae FA
           1090]
 gi|268587883|gb|EEZ52559.1| DNA mismatch repair protein [Neisseria gonorrhoeae PID1]
          Length = 658

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 337/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DGENLFDSASNHPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
                    L       +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPAHKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 656


>gi|33603032|ref|NP_890592.1| DNA mismatch repair protein [Bordetella bronchiseptica RB50]
 gi|81836878|sp|Q7WG61|MUTL_BORBR RecName: Full=DNA mismatch repair protein mutL
 gi|33568663|emb|CAE34421.1| DNA mismatch repair protein [Bordetella bronchiseptica RB50]
          Length = 629

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 203/629 (32%), Positives = 336/629 (53%), Gaps = 43/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+  +KE++EN++DA +  +E  + GGG     +TD+G 
Sbjct: 6   PIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A+ RH TSKI   D+  ++ + GFRGEAL SI +V+ LT++SR        
Sbjct: 66  GIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P +  PGT ++VR LF  +PAR  FL+SE  E     D + R+A+A+
Sbjct: 126 QIDGGSLQV---SPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F        + +        +  +RI  V+G +F+ + + +   +  I L G    
Sbjct: 183 PEVAFRLFHHDRAQRQWLP----ADHGQRIRDVLGAEFVGHVLPVQAAAGAIALMGMVTR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R+AYA+ +   R P  VL L+IDP  VDVNV
Sbjct: 239 PTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---------------------- 337
           HPAK  +RFR+   +  F+ Q + + + + G + +                         
Sbjct: 299 HPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDAAYAGEPAAAAPG 358

Query: 338 ---SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL---------PSD 385
               +    + +       +    A   T    +L  +   +   D            + 
Sbjct: 359 LAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAP 418

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
             T            A  + LG A AQ+H  YI++Q + GLV+VD HAAHER+++E++++
Sbjct: 419 AATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKR 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
             +   +  Q LL P +    E + AL+ EH+  L+ LG +    GP +IA+R +PA+L+
Sbjct: 479 ALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLA 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           + +I  L R ++ ++     +  L ++   +L+TMAC+GS+R+ R++   EMN LLR+ME
Sbjct: 539 RGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQME 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               + QCNHGRPT+++  ++D++KLF R
Sbjct: 599 ITERADQCNHGRPTWVQWSVNDLDKLFLR 627


>gi|329120521|ref|ZP_08249185.1| DNA mismatch repair protein MutL [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327461260|gb|EGF07592.1| DNA mismatch repair protein MutL [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 699

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 206/634 (32%), Positives = 327/634 (51%), Gaps = 45/634 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ +   I GGG    ++TDNG 
Sbjct: 68  RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAISVEIEGGGVKLLRVTDNGA 127

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKIS   D   + + GFRGE L SI +VS LTL SR        
Sbjct: 128 GIHPDDLALALSRHATSKISGLRDLERVASMGFRGEGLASIASVSRLTLTSRQSGEGHAR 187

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I      +S V   A   GT VEV DLFF  PAR  FLKS+  E      ++ R+A+A+
Sbjct: 188 TIRAEDGSLSPVSAAAAPEGTTVEVADLFFNTPARRKFLKSDNTEAAHCAAMLERLALAF 247

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P  +F+ +      +K+  Q+       R + ++G DF   ++ ++ ++  +TL G    
Sbjct: 248 PATAFSLTREGKPVFKLPPQT----LEARAAAIVGHDFQTASLPVSAQAGGMTLYGLIAK 303

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G + Q Y F+N R V+DK IL  ++ AY + +     P  VL L++ P  VD NV
Sbjct: 304 PTFAKGKSTQQYCFVNRRCVRDKVILHAVKQAYRDVLHHALVPAFVLFLDLPPEAVDANV 363

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL------------SKKMISSFHQ 347
           HPAK+ IRFR+ + +  F+  ++ KA+       +  +                      
Sbjct: 364 HPAKTEIRFRDSSAVHQFVFHTLDKALADTRADRTESIGNAGALLHQIAGIPDADRPSEN 423

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENR-----------------------LSTNDLLPS 384
              P +  P   T    T    + +  +                          +  L +
Sbjct: 424 PQNPFSDAPNAPTGGGKTAPAPYARAPQQRSLGLNESRRALDTYAELYRRSPQEDHELAA 483

Query: 385 DDPTYSEDNDPVEESE---ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
            + +     +   E+       + LG A AQ+   YI++Q  D L+++D HAA ER+ +E
Sbjct: 484 LEHSRRLPPERPSENPSDNPPEHPLGYAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYE 543

Query: 442 KMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           KM++  ++   + SQ+LL P        E A + EH + L   G+     G N IA+R +
Sbjct: 544 KMKRQRDTQGRLNSQSLLIPVTFAASREETAALAEHADSLRAYGLDLSAVGENRIAVRAV 603

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P +L   +I  L RD++ +  +   +  ++ R   +LATM+C+GS+R+GR++   EMN L
Sbjct: 604 PQMLGTSDIESLARDMLRDFAEHGASQQIEARENRLLATMSCHGSVRAGRRLTLPEMNAL 663

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 664 LRDMEHTPRSNQCNHGRPTWVKLTLKELDALFLR 697


>gi|85373986|ref|YP_458048.1| DNA mismatch repair protein [Erythrobacter litoralis HTCC2594]
 gi|84787069|gb|ABC63251.1| DNA mismatch repair enzyme [Erythrobacter litoralis HTCC2594]
          Length = 607

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 220/609 (36%), Positives = 357/609 (58%), Gaps = 18/609 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR+L E ++N+IAAGE++ERPS A+KEL+EN++DA ++R+   +  GG +  ++TD+
Sbjct: 1   MPTIRRLPEALVNRIAAGEVVERPSAALKELVENAVDAGATRIAVHLIDGGLTRIEVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDF-------SNIHTFGFRGEALPSIGAVSHLTLMSRP 112
           G GM    + +A++RH TSK+ DD          + T GFRGEALPSIG+VS   L SRP
Sbjct: 61  GCGMDPAAMELALERHATSKLPDDLIGEAQAIERVATLGFRGEALPSIGSVSRFALESRP 120

Query: 113 PQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
             +  G +  +    +    P A+ PGT   +  +F  +PAR  FL++ + E     DVI
Sbjct: 121 HGSEQGWRRVVDHGTLVEEGPAALPPGTRARIEQVFAKVPARRKFLRTPRSEYGACLDVI 180

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           RR+A+A P + FT    +   + +         P+R++Q++  +  +NAV L+ + + +T
Sbjct: 181 RRLAMARPDIGFTLDHGERRVFALQ---PGEELPDRVAQIVAPELKDNAVLLDMQRDTMT 237

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           L G  G+PT+NRG A+  Y+F+NGR V+D+ ++  +R AY++ +   R+ V+ L L++  
Sbjct: 238 LTGIAGLPTYNRGVADHQYLFVNGRPVKDRLLVGAVRGAYSDMLARDRHAVLALFLDLPS 297

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
             VDVNVHPAK+ +RFR+   +R FI+  +++A++     ++    +  +  + Q+   +
Sbjct: 298 EDVDVNVHPAKTEVRFRDAQAVRGFIVSGLRQALSTGDRRSAQGPDRTAMKRWQQEPVRE 357

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQL 406
              P   +              R  +++    +    +       E+E        H+ L
Sbjct: 358 EPSPALRSIFEGRGWSKPGTGVREPSHEWHSHEGEVIASPQGRAVEAEDIAADAKQHFPL 417

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDL 465
           G+A  Q+   YI+++  DGLV+VDQHAAHERL+ E+++       ++ SQ LL PE+++L
Sbjct: 418 GVARGQVANTYIVAEAADGLVLVDQHAAHERLVLERLKAAGAGEAVSRSQALLMPEVVEL 477

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            E  C  +    E L  +G+  ERFGP A+ +R +P  L+  N  +LL+DI D++     
Sbjct: 478 DEPSCDRLESAAEKLDAMGLSIERFGPGAMLVRSLPHALAGSNPGKLLQDIADDLAKHGD 537

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              L+++++ +L TMAC+GS+R+GR ++  EMN LLREME+ P S QCNHGRPT++KL +
Sbjct: 538 ALWLEEKLDLVLGTMACHGSVRAGRTLRVDEMNALLREMERTPRSGQCNHGRPTWVKLSM 597

Query: 586 SDIEKLFGR 594
            D+EKLFGR
Sbjct: 598 EDVEKLFGR 606


>gi|257094379|ref|YP_003168020.1| DNA mismatch repair protein MutL [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046903|gb|ACV36091.1| DNA mismatch repair protein MutL [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 615

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 199/612 (32%), Positives = 332/612 (54%), Gaps = 23/612 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + +I+QIAAGE+++RP+  +KEL+EN+LDA SS ++  +  GG    +++D+G 
Sbjct: 6   RIALLPDLLISQIAAGEVVDRPASVLKELLENALDAGSSTIQIQLEEGGVKLLRVSDDGG 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG- 118
           GM  +E+ +A+ RH TSKI+   D   + T GFRGEAL S+ AV+ LTL SR   ++   
Sbjct: 66  GMARDELALALTRHATSKINSLADLERVGTLGFRGEALASVAAVARLTLTSRQASSDRAA 125

Query: 119 --AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                 ++ E  +  +P A+  GT+VE+RDL++  PAR  FLKSE  E     + ++R+A
Sbjct: 126 GQHAWRLTDEPGAGPQPAALQAGTVVEMRDLYYNTPARRKFLKSEGSEFAHCAEAVKRIA 185

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +A+P V+FT S        ++      +   R+  ++G++F+  +  L+  +  + + GY
Sbjct: 186 LAHPGVAFTLSHNGRVALHLSA----SDSRVRVGAILGDEFLAESRCLDVSAGPLRVAGY 241

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +P ++R   +  Y ++NGR V+DK +   +R AY + +   RYP   L L+IDP  VD
Sbjct: 242 CALPAYSRARGDAQYCYVNGRFVRDKLLGHALRQAYQDLLHGSRYPAYCLFLDIDPAGVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-----GISTSSVLSKKMISSFHQDNAP 351
           VNVHP K+ +RFR+   +  F+  ++Q+ +          S+S V +     S   +  P
Sbjct: 302 VNVHPQKTEVRFRDARAVHQFVFHAVQRLLASPLATLGTASSSEVPTPNTQVSPWPEQRP 361

Query: 352 KTHLPKYATSL-----TNTQEKLFLQENRLSTNDLLPSDDPTYSEDND----PVEESEAT 402
                  A  +     T  Q  L + E   +   L   D     E            +  
Sbjct: 362 AAPAMHAAEPVAFGRRTPFQGSLHVGEPARAGTYLSFVDATQSPEPAPEELSNAAGDDGR 421

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
              LG A AQ+   YI++Q T GL++VD HAAHER+++E+++Q  +  ++ +Q LL P +
Sbjct: 422 APPLGYALAQLQGVYILAQNTHGLIVVDMHAAHERILYERLKQALDGERVATQPLLIPAV 481

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                 + A   EH   L RLG      GP  +A+R +PA+L   +   L+R ++ E+ +
Sbjct: 482 FMADALDVAAAEEHSVALQRLGFDVAAMGPRQLAVRSVPALLLGGDPAALVRSLLGELRE 541

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              +  +      +LA+MAC+G++R+ R +   EMN LLR+ME+   S  CNHGRPT+++
Sbjct: 542 HGISQLMTTHRNELLASMACHGAVRARRLLSLSEMNALLRQMEETERSDHCNHGRPTWMQ 601

Query: 583 LKLSDIEKLFGR 594
             ++++++ F R
Sbjct: 602 FSMAELDRYFQR 613


>gi|170698332|ref|ZP_02889407.1| DNA mismatch repair protein MutL [Burkholderia ambifaria IOP40-10]
 gi|170136751|gb|EDT05004.1| DNA mismatch repair protein MutL [Burkholderia ambifaria IOP40-10]
          Length = 661

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 199/644 (30%), Positives = 330/644 (51%), Gaps = 59/644 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPGELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADVAHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DATTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLP- 356
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           +S      A   + P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAQLSPAPGGPASFLNTPL 375

Query: 357 -------------KYATSLTNTQEKLFLQENRLS-------------------------- 377
                           +S +++    ++++ R++                          
Sbjct: 376 GLGAATGTGGSGFSSPSSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDTGAGT 435

Query: 378 -------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
                   +D     +        P+  +      LG A  QIH  Y+++Q   GLVIVD
Sbjct: 436 PDGTTVIAHDSASVTNTPPGFVASPLAATAHDEQPLGFALGQIHGIYVLAQNAHGLVIVD 495

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            HAAHER+++E+ +       I  Q+LL P  +     E   + E  + L  LG      
Sbjct: 496 MHAAHERILYEQFKNALADRTIAVQSLLLPISMTATPVEIGTVEEERDTLESLGFDLAVL 555

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
            P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R
Sbjct: 556 SPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRANR 615

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 RLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 659


>gi|182677997|ref|YP_001832143.1| DNA mismatch repair protein MutL [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|238691233|sp|B2II71|MUTL_BEII9 RecName: Full=DNA mismatch repair protein mutL
 gi|182633880|gb|ACB94654.1| DNA mismatch repair protein MutL [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 637

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/636 (36%), Positives = 368/636 (57%), Gaps = 42/636 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L   +I++IAAGE+IERP+ A+KEL+EN+LDA++S ++ V+ GGGK+  ++TDNG
Sbjct: 1   MTIRRLDPVLIDRIAAGEVIERPAAAVKELVENALDAQASEIDVVLEGGGKTLIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM++E++ ++V+RH TSK+ D D   I T GFRGEALPSIG+VS L+L SR      G 
Sbjct: 61  CGMSAEDLELSVERHATSKLPDGDLFAIATLGFRGEALPSIGSVSVLSLTSRMETATHGV 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++   +  +V P     GT +EVR+LF T PARL FLK ++ E     D ++R+A+A+
Sbjct: 121 ALSVEHGRKQTVIPCGQPRGTRIEVRELFRTTPARLKFLKGDRAEARAAADAVQRLAMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P   FTF++  +  +     +        RI  V+G+DF  NA+ +  +   I L+G+ G
Sbjct: 181 PTRRFTFTSTDTAGFDYLPCAEGPEGLLARIGAVLGKDFEANALPVEAEREGIILEGFIG 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT++R N    Y+F+NGR V+DK +   +R AY + +P GRYP + L L  DP++VDVN
Sbjct: 241 LPTWHRANGLAQYLFVNGRPVRDKLLTGAVRAAYMDYLPAGRYPALALFLRCDPQEVDVN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFR+  ++R  ++ ++++ + +     +    +  +      +A +   P  
Sbjct: 301 VHPAKAEVRFRDQGLVRGLLVGALKQTLQQAMHRATPDGGRVALGLLAMHSAGQGQRPVS 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------------- 393
           + S+ +   +      R    + +   D   S                            
Sbjct: 361 SASMPSASRQAPTMPPRDWIKEGVQDWDWRQSPARPQNPPQNPPPGDRIEMSGSLPLGFA 420

Query: 394 --------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                                     LG A AQ+H+ YI++QT DG V+VDQHAAHERL+
Sbjct: 421 ETPAGLNGDSGKELSEAASETPHDEPLGFARAQLHETYIVAQTRDGFVLVDQHAAHERLV 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E+++Q   +  +  Q LL P I++L E +   +++    L   G+  E FGP A+A+RE
Sbjct: 481 YERLKQARAAQTVERQILLLPTIVELPEADVERLVDAASMLADFGLVVESFGPGALAVRE 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           IP +L   ++P L+ D+ +++ +       L+ +++++LAT AC+ S+R+GR++   EMN
Sbjct: 541 IPIVLKDGSVPALIHDLANQLQEDDKALIPLERKLDHVLATFACHHSVRAGRRLGIEEMN 600

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LLREME+ P S QCNHGRPT+I+LKL DIE+LFGR
Sbjct: 601 ALLREMERTPGSGQCNHGRPTYIELKLGDIERLFGR 636


>gi|33591485|ref|NP_879129.1| DNA mismatch repair protein [Bordetella pertussis Tohama I]
 gi|81836381|sp|Q7W0A6|MUTL_BORPE RecName: Full=DNA mismatch repair protein mutL
 gi|33571127|emb|CAE40624.1| DNA mismatch repair protein [Bordetella pertussis Tohama I]
 gi|332380926|gb|AEE65773.1| DNA mismatch repair protein [Bordetella pertussis CS]
          Length = 629

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 203/629 (32%), Positives = 336/629 (53%), Gaps = 43/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+  +KE++EN++DA +  +E  + GGG     +TD+G 
Sbjct: 6   PIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A+ RH TSKI   D+  ++ + GFRGEAL SI +V+ LT++SR        
Sbjct: 66  GIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P +  PGT ++VR LF  +PAR  FL+SE  E     D + R+A+A+
Sbjct: 126 QIDGGSLQV---SPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F        + +        +  +RI  V+G +F+ + + +   +  I L G    
Sbjct: 183 PEVAFRLFHHDRAQRQWLP----ADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R+AYA+ +   R P  VL L+IDP  VDVNV
Sbjct: 239 PTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---------------------- 337
           HPAK  +RFR+   +  F+ Q + + + + G + +                         
Sbjct: 299 HPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPG 358

Query: 338 ---SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL---------PSD 385
               +    + +       +    A   T    +L  +   +   D            + 
Sbjct: 359 LAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAP 418

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
             T            A  + LG A AQ+H  YI++Q + GLV+VD HAAHER+++E++++
Sbjct: 419 AATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKR 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
             +   +  Q LL P +    E + AL+ EH+  L+ LG +    GP +IA+R +PA+L+
Sbjct: 479 ALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLA 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           + +I  L R ++ ++     +  L ++   +L+TMAC+GS+R+ R++   EMN LLR+ME
Sbjct: 539 RGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQME 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               + QCNHGRPT+++  ++D++KLF R
Sbjct: 599 ITERADQCNHGRPTWVQWSVNDLDKLFLR 627


>gi|307545956|ref|YP_003898435.1| DNA mismatch repair protein [Halomonas elongata DSM 2581]
 gi|307217980|emb|CBV43250.1| DNA mismatch repair protein [Halomonas elongata DSM 2581]
          Length = 661

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 210/653 (32%), Positives = 343/653 (52%), Gaps = 61/653 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++ NQIAAGE++ERPS  +KEL+EN++DA S R+E  +  GG    ++ D+G G
Sbjct: 7   IQVLDPRLANQIAAGEVVERPSSVVKELVENAIDAGSRRIEVELESGGARLIRVRDDGVG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN-TGA 119
           +  E++P+A+ RH TSKI+  DD   + + GFRGEAL SI +VS L LMS    +  +G 
Sbjct: 67  IGEEDLPLALSRHATSKIASLDDLEGVASLGFRGEALASISSVSRLELMSNVDDDPTSGW 126

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++ + G ++     P     GT V VRDLFF  PAR  FL++E+ E   + +  RR A++
Sbjct: 127 RVVVEGRRMEPRVTPSPHPRGTSVTVRDLFFNTPARRKFLRTEKTEFGHVEEAFRRQALS 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + +     +   ++++          R+  ++G+ F+ NA+ L+ ++  + L G+ G
Sbjct: 187 RLDLGWVLRHNQKTIHQLSPGGDLVGHERRLQALLGKAFLENALHLDIETGGLRLWGWVG 246

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT +R  A+Q Y F+NGR V+D+ +   IR AY + +  GR+PV VL LE+DP  VDVN
Sbjct: 247 LPTHSRAQADQQYFFVNGRVVRDRLVAHAIRQAYRDVLFHGRHPVFVLYLEVDPTVVDVN 306

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VHP K  +RFR+  ++ +F+  S+ +A+   + G      ++++  +      A      
Sbjct: 307 VHPTKHEVRFRDGRMVHDFLFSSLHRALGEARAGQPGEGRVTEESPAGESASQASAPAAS 366

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------------- 393
           + A S    Q++      R  ++    + D   +                          
Sbjct: 367 EVAESAGRWQQQPMALHGRDESDGQKVTPDRVRAFMEGYRALHPEHEESLLTPQPSAPGA 426

Query: 394 ---------------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                                         EE       LG A AQ+H  YI+SQT  GL
Sbjct: 427 GGNAAEVALAEREASPAAATSSPAPAPAMPEEDATKAPPLGYAVAQLHGIYILSQTERGL 486

Query: 427 VIVDQHAAHERLIFEKMRQDF-----NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           V+VD HAAHER+++E+M+        N   + +Q LL P  +     E A      E   
Sbjct: 487 VVVDMHAAHERIVYERMKAQVHGEAGNGGGLQAQPLLVPVSLAASAAEVATAEAEREAFS 546

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
           RLG++ +  GP  + +R++PA+L   ++  L+RD++ ++     +  L+  I  +L+TMA
Sbjct: 547 RLGVELDVAGPETLLVRQVPALLVDADVEPLVRDMLGDLERYGRSDRLEAHINELLSTMA 606

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C+GS+R+ R++ + EMN LLR+ME+   S QCNHGRPT+ ++ L ++++LF R
Sbjct: 607 CHGSVRANRQLTTAEMNALLRDMERTERSGQCNHGRPTWTEMSLKELDRLFLR 659


>gi|240125775|ref|ZP_04738661.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-92-679]
 gi|268684372|ref|ZP_06151234.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-92-679]
 gi|268624656|gb|EEZ57056.1| DNA mismatch repair protein [Neisseria gonorrhoeae SK-92-679]
          Length = 658

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 214/658 (32%), Positives = 339/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------KGISTSSVLSKK 340
           HP K+ IRFR+   +   +  ++ KA+                      G++ + + S+ 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 341 MISSFHQDNAP-----------------KTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
              +     +                  KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DGENLFDSASNHPTGNKPDIRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
                    L       +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPAHKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 656


>gi|91773654|ref|YP_566346.1| DNA mismatch repair protein MutL [Methanococcoides burtonii DSM
           6242]
 gi|91712669|gb|ABE52596.1| DNA mismatch repair protein MutL [Methanococcoides burtonii DSM
           6242]
          Length = 603

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 197/600 (32%), Positives = 314/600 (52%), Gaps = 13/600 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E  IN+IAAGE+IERP+  +KEL++N++DA ++ +   +   G     +TDNG 
Sbjct: 8   KIRVLDEATINKIAAGEVIERPASVVKELVDNAIDAGATEIRVEVVAAGTELITVTDNGS 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A  +H TSKI+  +D   + T GFRGEAL SI AV+ + L +R  +   G 
Sbjct: 68  GMPREDAILAFTKHGTSKIAQIEDLEEVLTLGFRGEALSSIAAVARVYLTTRQKKEIAGT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG  + +V  V   PGT + V  LF+  PAR  +LKS + E   ITD++ R A  +
Sbjct: 128 KVVISGGLVENVVEVGAAPGTSISVESLFYNTPARKKYLKSLRTELAHITDIVTRHAFGH 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SFT  +       +    T+GN  + I  ++G D     V +  +S+ + + GY   
Sbjct: 188 PDISFTLISDGK---VLVRSPTSGNVLDSIIYLLGVDIAKKIVPVEFRSDIVNISGYISK 244

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   +Q + FINGR V    I + +R  Y   IP GRYPV VL LE+D R+VDVNV
Sbjct: 245 PEVTRSGTDQQFFFINGRGVSSTSISNAVRLGYYNLIPKGRYPVAVLDLELDLREVDVNV 304

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST--SSVLSKKMISSFHQDNAPKTHLPK 357
           HPAK Y+R  +   + + +I +++ A+    +    S   ++ + + F +++   T +  
Sbjct: 305 HPAKRYVRLSHEREVSDAVILAVENALKGDDLVPKVSLPENRPVQAVFSEESKTGTEVIS 364

Query: 358 Y---ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
               + S+   +E            +             +   +  +T         Q++
Sbjct: 365 SEGVSVSVPVAKEADEPYHASARDTEKRLKRSERILSKTEKNPDRVSTGLDKARIVGQVN 424

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + YII +   G++IVDQHAAHER+++E++R   +S     Q L+TP ++DL   E  L+ 
Sbjct: 425 ELYIIVEFEGGIMIVDQHAAHERVMYEQIRDGNSSG---WQELITPVMLDLTSKEKVLLD 481

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E+   L  +G     FGPN+  +  IP++L K    +L+ DII +++ S          +
Sbjct: 482 EYIPLLEEMGFAISEFGPNSFVVTSIPSLLGKLENTELIHDIIMDVLSSGKVKRDTGMFD 541

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++  TMAC  +I++G      +M  LLR+++   N   C HGRPT I     +++KLF R
Sbjct: 542 SLCKTMACRAAIKAGAGCSMDQMENLLRQLDMAENPYTCPHGRPTVISFTKGELDKLFKR 601


>gi|289207679|ref|YP_003459745.1| DNA mismatch repair protein MutL [Thioalkalivibrio sp. K90mix]
 gi|288943310|gb|ADC71009.1| DNA mismatch repair protein MutL [Thioalkalivibrio sp. K90mix]
          Length = 626

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 222/627 (35%), Positives = 347/627 (55%), Gaps = 36/627 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KLSE++INQIAAGE++ERP+  +KEL+EN+LDA S+R+E  +  GG    QI+DNG
Sbjct: 1   MSIEKLSEQLINQIAAGEVVERPASVVKELVENALDAGSTRIEVRLEQGGIRLIQISDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+A+ RH TSKI   +D   +HT GFRGEALPSI +VS L++ S       G
Sbjct: 61  CGIHRDELPLALSRHATSKIRSMEDLEALHTLGFRGEALPSIASVSRLSMTSAVEGERNG 120

Query: 119 AQIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            ++   G  +     P A   GT VEVRDLFF +PAR  F+++E+ E N    VIR  A 
Sbjct: 121 WRLTGDGSDVFREAAPAAHPVGTTVEVRDLFFNVPARRKFVRTERTEFNHCETVIRTQAA 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P+V+FT          +   +   +  +R+  ++GE F+  A  + E+   + L G+ 
Sbjct: 181 ACPEVAFTLRHNDRVVLDLPAAA---DPAQRVRALLGEAFMGAATPVGEQRAGLKLSGWL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G PT +R   +Q + F+NGR ++D+ + + +R AY + +  GR+P+ VL LE+DP QVDV
Sbjct: 238 GAPTQSRAQPDQQFFFVNGRAIRDRVLAAAVRKAYQDVLYHGRHPMFVLELELDPVQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-------------GISTSSVLSKKMISS 344
           N HP K  +RFR   ++ +FI  ++ KA+                   ++    ++ I +
Sbjct: 298 NAHPTKQEVRFRESRMVHDFIFHALHKALADVRPGDGGMPGYLPADTGSAPAPQERAIPA 357

Query: 345 FHQDNA-PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT- 402
           F ++ A      P+Y     +       +    S      +           V E     
Sbjct: 358 FPRERALSGLGAPEYRAEARSPAAGSGDRREYASGTSSDYAAAWAEFRGPAAVAEPAPRS 417

Query: 403 ---------------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                             LG A  Q+ + +I+++   GL++VD HAAHER+ +E++++++
Sbjct: 418 FEAAGGASESDDAEGMPPLGFALGQVAETFILAENASGLIVVDMHAAHERITYERLKREW 477

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            S  ITSQ LL PE +D+   E AL  EH   L  LG + +R GP  +A+R  PA+L  +
Sbjct: 478 GSQGITSQPLLVPETLDVTPAEAALAEEHAGVLGALGFELDRAGPETLALRAAPALLRGR 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +  QL+RD++ ++     ++  +  +  +L TMAC+GS+R+GR++   EMN+LLR+ME  
Sbjct: 538 DTAQLVRDVLADLAAVGYSHRAEGEMNAVLGTMACHGSVRAGRRLTLPEMNQLLRDMEAT 597

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             S QCNHGRPT+++L    +++LF R
Sbjct: 598 ERSGQCNHGRPTWVELDHHALDRLFLR 624


>gi|304321473|ref|YP_003855116.1| DNA mismatch repair protein [Parvularcula bermudensis HTCC2503]
 gi|303300375|gb|ADM09974.1| DNA mismatch repair protein [Parvularcula bermudensis HTCC2503]
          Length = 632

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/612 (38%), Positives = 363/612 (59%), Gaps = 22/612 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L    +N+IAAGE+IERP+ A+KEL+EN++DA +  +   I  GGK+   + D+G 
Sbjct: 23  RIRRLPAVAVNRIAAGEVIERPAAAVKELVENAIDAGARTITVRIDQGGKALIDVEDDGC 82

Query: 62  GMTSEEIPMAVQRHCTSKISDD------FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           GM +E++ +A++RH TSK++ D        +I T GFRGEALPSIGAV+ L + SR    
Sbjct: 83  GMGAEDLILALERHATSKLAADETGCVDLLDIATLGFRGEALPSIGAVAELDIASRCHGG 142

Query: 116 NTGAQIAISGEKISSVRPVAMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
           + G +I+     I   RP      GT V V+ LFF  PARL FLK++  ET  +++ ++ 
Sbjct: 143 D-GIKISCRAGVIDPPRPHPFVGVGTKVSVKRLFFATPARLKFLKADSAETRAVSETLKA 201

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
           +A+A P++ FT       R+    +         R+  ++G++F +NA+ ++       L
Sbjct: 202 LAMAQPEIGFTLIADGRQRFSYPPEGEGPEGALRRLGHIMGKEFEDNALAIDIDREGARL 261

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G+ G+PT NRG  ++ Y+F+NGR V+D+ ++  +R AYA+ +   R+P++ L +++  +
Sbjct: 262 HGFAGVPTLNRGQPDRQYLFVNGRPVKDRLMVGAVRGAYADFLARDRHPLLALYIDLPFQ 321

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           QVDVNVHPAK+ +RFR+   IR  I+  ++  +   G   S+ ++   +S F    AP  
Sbjct: 322 QVDVNVHPAKTEVRFRDAAAIRGMIVSGLRHMLAAAGHRASTTIAASALSRFEGAEAPPP 381

Query: 354 HLPKYATS-----------LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
             P   T+           L   Q   F  E         PS      ED     E E  
Sbjct: 382 QGPNAPTTFVHGAHRERPILPPRQAPPFAAEGTTLFRGEAPSAQTI--EDPSQAHEEEGP 439

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            + LG+  AQ+H+ Y+++QTTDG+VIVDQHAAHERLI+E M+       I  QTLL PE+
Sbjct: 440 SFPLGVPRAQLHETYVLAQTTDGIVIVDQHAAHERLIYEAMKSRQRDRGIERQTLLIPEV 499

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           +DL + E  L+++  E+L  LG+  E FG  A+ +RE+P +    ++  L+RDI  +++ 
Sbjct: 500 VDLPQEEAELLIDRTEELAALGLVVEAFGGTAVLVREVPCLFGDGDVAGLIRDIAADLVT 559

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              +  L+ R+ +I   MAC G+I+SGR++ + EMNRLLR+ME  P+S QCNHGRPT+++
Sbjct: 560 LDGSAALETRLGDIAGNMACRGAIKSGRRLTAEEMNRLLRDMEAVPHSGQCNHGRPTYVE 619

Query: 583 LKLSDIEKLFGR 594
           LKL+DIE+LFGR
Sbjct: 620 LKLADIERLFGR 631


>gi|114319732|ref|YP_741415.1| DNA mismatch repair protein MutL [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226126|gb|ABI55925.1| DNA mismatch repair protein MutL [Alkalilimnicola ehrlichii MLHE-1]
          Length = 636

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 202/631 (32%), Positives = 338/631 (53%), Gaps = 38/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L  +++NQIAAGE++ERP+  +KEL+ENSLDA +  +   +  GGK   ++ D+G 
Sbjct: 4   PIQQLPLQLVNQIAAGEVVERPASVLKELVENSLDAGARSLAVELEQGGKRLIRVRDDGN 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI+   +   + + GFRGEALPSIGAVS L L+SRPP      
Sbjct: 64  GIPREQLGLALRRHATSKITSLSELEQVVSLGFRGEALPSIGAVSRLRLISRPPGAEHAW 123

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +      + +   P A  PGT VEVRDLFF  P R  FL++++ E +   + +RR+A+ 
Sbjct: 124 AVRTDGDSEPAGPEPAAHPPGTTVEVRDLFFNTPGRRKFLRTDRTEFSHAQEALRRLALG 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           +           R+ +++GE F+   + L   +  + L G+  
Sbjct: 184 RFDVAFRLQHNGRTVLDLPPAGDRAGAERRLGELLGEGFLGECIHLECAAAGLKLSGWLA 243

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R   +  Y ++NGR ++D+     +R AYA+ +   R+P  +L L++DP +VDVN
Sbjct: 244 LPTFSRSQGDLQYFYVNGRMIRDRMAGHALRRAYADVLYRDRFPAYLLYLDLDPDRVDVN 303

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP-- 356
           VHP K  +RFR+  ++ +F+ + +++A+ +   +T+S +     S    +          
Sbjct: 304 VHPTKHEVRFRDSRLVYDFLFRQVREALARVSPATASGVQPPQGSVASAEGPRSLAAAAG 363

Query: 357 -----------------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                                        + A  L   + K       +++   +  D P
Sbjct: 364 ERWGGAAPAAGAAPTARRSPHQHGLGLPLEEARLLYGERSKAHAAGPAVASPSGVVRDAP 423

Query: 388 TYSEDNDPV----EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                        + +E     LG A AQ+H  YI++Q   GLV+VD HAAHER+++E+M
Sbjct: 424 AGEAVACETGGAGDPTERGGPPLGHALAQVHGVYILAQNDQGLVLVDMHAAHERVVYERM 483

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +   + + I SQ LL PE + +   E   +    E   +LG + +R  P+ + +R +PA+
Sbjct: 484 KAQLSGSGIASQALLMPEGLSVTPAEGEEVERAGERFRQLGFQVDRVAPDRVLVRAVPAL 543

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L+      L+RD++ ++   S +  +++ + ++LATMAC+GS+R+ R++   EM+ LLRE
Sbjct: 544 LANAEPVALVRDVLADLRTQSRSRQVEEALNHVLATMACHGSVRANRRLTLPEMDALLRE 603

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME  PNS QCNHGRPT+  L +  +++LF R
Sbjct: 604 MEATPNSGQCNHGRPTWTVLDMDALDRLFMR 634


>gi|194098697|ref|YP_002001759.1| DNA mismatch repair protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999002|ref|ZP_04718926.1| DNA mismatch repair protein [Neisseria gonorrhoeae 35/02]
 gi|240080646|ref|ZP_04725189.1| DNA mismatch repair protein [Neisseria gonorrhoeae FA19]
 gi|240112989|ref|ZP_04727479.1| DNA mismatch repair protein [Neisseria gonorrhoeae MS11]
 gi|254493793|ref|ZP_05106964.1| DNA mismatch repair protein [Neisseria gonorrhoeae 1291]
 gi|268594850|ref|ZP_06129017.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae 35/02]
 gi|268596770|ref|ZP_06130937.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae FA19]
 gi|268599068|ref|ZP_06133235.1| DNA mismatch repair protein [Neisseria gonorrhoeae MS11]
 gi|238690209|sp|B4RLX4|MUTL_NEIG2 RecName: Full=DNA mismatch repair protein mutL
 gi|193933987|gb|ACF29811.1| DNA mismatch repair protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512833|gb|EEH62178.1| DNA mismatch repair protein [Neisseria gonorrhoeae 1291]
 gi|268548239|gb|EEZ43657.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae 35/02]
 gi|268550558|gb|EEZ45577.1| DNA mismatch repair protein mutL [Neisseria gonorrhoeae FA19]
 gi|268583199|gb|EEZ47875.1| DNA mismatch repair protein [Neisseria gonorrhoeae MS11]
 gi|317164295|gb|ADV07836.1| DNA mismatch repair protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 658

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/658 (32%), Positives = 338/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ V+  + GGG    ++ DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAVDVELEGGGIRLIRVGDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  ++ + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNSALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL LE+ P+ VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLELPPKAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRANLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL-- 381
                   +++     K  +     ++ KT    Y  +    Q  L L+E+R + +    
Sbjct: 359 DSENLFDSASNHPTGNKPDTRNAFGSSGKTAPMPYQAARAPQQHSLSLRESRAAMDTYAE 418

Query: 382 ---------LPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
                    L       +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSQFEQARFGNMPSETPAHKTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   G++    G N +A+R  P +L K ++  L RD++ E+    ++ T+      I
Sbjct: 539 AETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDTLFLR 656


>gi|85708576|ref|ZP_01039642.1| DNA mismatch repair enzyme [Erythrobacter sp. NAP1]
 gi|85690110|gb|EAQ30113.1| DNA mismatch repair enzyme [Erythrobacter sp. NAP1]
          Length = 610

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 227/610 (37%), Positives = 364/610 (59%), Gaps = 17/610 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR+L   ++N+IAAGE++ERP+ A+KEL+EN++DA + R+  V+  GG +  ++TD+
Sbjct: 1   MPQIRRLPTALVNRIAAGEVVERPAAALKELVENAIDAGARRIGVVLTDGGLTRLEVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G GMT +E+ +A++RH TSK+ D+    + T GFRGEALPSI +V+ LTL SRP     G
Sbjct: 61  GCGMTPDEMGLALERHATSKLPDEAIEMVATLGFRGEALPSIASVARLTLESRPKGAADG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  +   +     P A+  GT V V  +F  +PAR  FL++ + E     D++RR+A+A
Sbjct: 121 WRRVVDHGETVEDAPAALPVGTRVRVEQIFAKVPARRKFLRTPRSEYIACLDIVRRLAMA 180

Query: 179 YPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----SNEIT 232
            P ++FT         R  +  Q+  G    R++Q++  +  +NAVE+  +       + 
Sbjct: 181 RPDIAFTLENGAEGKIRKALATQTDEG-LSNRVAQIVARELKDNAVEIELERDGPHGPMR 239

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           L G  G+PT+NRG A+  Y+F+NGR V+DK +   +R AY++ +   R+ V+ L L++ P
Sbjct: 240 LSGLAGLPTYNRGVADHQYLFVNGRPVKDKLLTGAVRGAYSDMLARDRHAVLALFLDVPP 299

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--NA 350
             VDVNVHPAK+ +RFR+ T +R FI+  +++A+      ++    +  +  +  +  + 
Sbjct: 300 EDVDVNVHPAKTEVRFRDSTGVRGFIVSGLRQALATGDRRSAQGPDRAAMERWQAEPVHE 359

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
           P   +     S   +  +  + E R+       +  P    +     E+E   Y LGIA 
Sbjct: 360 PAPAMRSIFESRDWSAPQQRVAEPRVEYTPRPDAALPQGRAEEAAPIENEVAEYPLGIAR 419

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGE 469
            Q+   YI++++ D L++VDQHAAHERL+ E++++         SQ LL P+++++ E +
Sbjct: 420 GQVANTYIVAESKDALILVDQHAAHERLVLERLKRAGAGEATQRSQALLVPDVVEMDEAD 479

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-----DSS 524
           C  + +  E L R G+  ERFGP A+ +R +P+ ++K +  +LLRD+ D+I      + S
Sbjct: 480 CDRLEDAAEGLARFGLTVERFGPAAMLVRSVPSAIAKADTGKLLRDLADDIAKHGKQEDS 539

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +  L +R+E +LATMAC+GS+R+GR +   EMN LLREME  P S QCNHGRPT++KL 
Sbjct: 540 GSLLLAERLEYVLATMACHGSVRAGRVLSVAEMNALLREMEATPRSGQCNHGRPTWVKLS 599

Query: 585 LSDIEKLFGR 594
           + D+EKLFGR
Sbjct: 600 MEDVEKLFGR 609


>gi|171321502|ref|ZP_02910443.1| DNA mismatch repair protein MutL [Burkholderia ambifaria MEX-5]
 gi|171093210|gb|EDT38417.1| DNA mismatch repair protein MutL [Burkholderia ambifaria MEX-5]
          Length = 662

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 199/645 (30%), Positives = 330/645 (51%), Gaps = 60/645 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPGELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADVAHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DATTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLP- 356
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           +S      A   + P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAQLSPAPGGPASFLNTPL 375

Query: 357 -------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE------------ 391
                           +S +++    ++++ R++   L  +      +            
Sbjct: 376 GLGAATGTGGSGFSSPSSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDTGAGT 435

Query: 392 ----------------------DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                                    P+  +      LG A  QIH  Y+++Q   GLVIV
Sbjct: 436 PDGTTIVARDAAEAPNAPLSGFVASPLTATAHDEQPLGFALGQIHGIYVLAQNAHGLVIV 495

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           D HAAHER+++E+ +       I  Q+LL P  +     E   + E  + L  LG     
Sbjct: 496 DMHAAHERILYEQFKNALADRTIAVQSLLLPISMTATPVEIGTVEEERDTLESLGFDLAV 555

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
             P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ 
Sbjct: 556 LSPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRAN 615

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 RRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 660


>gi|221200993|ref|ZP_03574033.1| DNA mismatch repair protein MutL [Burkholderia multivorans CGD2M]
 gi|221206555|ref|ZP_03579568.1| DNA mismatch repair protein MutL [Burkholderia multivorans CGD2]
 gi|221214412|ref|ZP_03587383.1| DNA mismatch repair protein MutL [Burkholderia multivorans CGD1]
 gi|221165669|gb|EED98144.1| DNA mismatch repair protein MutL [Burkholderia multivorans CGD1]
 gi|221173864|gb|EEE06298.1| DNA mismatch repair protein MutL [Burkholderia multivorans CGD2]
 gi|221178843|gb|EEE11250.1| DNA mismatch repair protein MutL [Burkholderia multivorans CGD2M]
          Length = 661

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 199/646 (30%), Positives = 327/646 (50%), Gaps = 63/646 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 83  IPPGELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMFITSRTADAAHATR 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCVEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +     + H + AP+      +T
Sbjct: 316 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGH--AAHLEPAPRGPASFLST 373

Query: 361 SLTNTQEKL-------------------FLQENRLSTNDLLPSD---------------- 385
            L  +Q +                    +L++ R++   L  +                 
Sbjct: 374 PLGQSQNQPASTAGSGFSSPSSSAPGSTWLRQARMTQGTLPVAQPLALYDALFGRKDTGA 433

Query: 386 -------------DPTYSEDNDPVEESEATHYQLGIACAQ----IHQNYIISQTTDGLVI 428
                        D   +          A               IH  Y+++Q   GLVI
Sbjct: 434 GTPDATTTARDAADDPAAPLPGFAAMPSAASMHDEQPLGFALGQIHGIYVLAQNAHGLVI 493

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           VD HAAHER+++E+ +       +  Q+LL P  +     E   + E  + L  LG    
Sbjct: 494 VDMHAAHERILYEQFKNALADRAVAVQSLLLPVSMTATPVEIGTVEEERDTLEALGFDLA 553

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
              P ++AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+
Sbjct: 554 VLSPTSLAIRAVPALLKDADLQALARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRA 613

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            R++   EMN LLR+ME    + QCNHGRPT+ +L L D+++LF R
Sbjct: 614 NRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLGDLDRLFMR 659


>gi|325130516|gb|EGC53271.1| DNA mismatch repair protein MutL [Neisseria meningitidis
           OX99.30304]
          Length = 658

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 214/658 (32%), Positives = 341/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSEATEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSRQVHQLVFHTLNKALADTRADLTESVGNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   ++      K  +      + KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFNRASDYPTGNKPDTRNAFGASGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K +I  L RD++ E+    ++ T+++    I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRAVPAMLGKSDIVSLARDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|222056190|ref|YP_002538552.1| DNA mismatch repair protein MutL [Geobacter sp. FRC-32]
 gi|254766168|sp|B9M3N0|MUTL_GEOSF RecName: Full=DNA mismatch repair protein mutL
 gi|221565479|gb|ACM21451.1| DNA mismatch repair protein MutL [Geobacter sp. FRC-32]
          Length = 598

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 201/599 (33%), Positives = 325/599 (54%), Gaps = 10/599 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E++ N+IAAGE++ERP+  +KEL+EN+LDA  S V   I  GGK   +++D G 
Sbjct: 4   RIKILPEQLTNKIAAGEVVERPASVVKELVENALDAGCSEVMVEIEAGGKRLIRVSDTGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A++RH TSKI+  +D  ++ T GFRGEALPS+ +VS  TL +R   +  G 
Sbjct: 64  GMTREDALLALERHATSKIANDEDLFSLATLGFRGEALPSVASVSRFTLATREKGSLEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G +I  V+   M  GT++ VR+LFF  PARL F+KS + E   + D++ R+AI+ 
Sbjct: 124 EIYAEGGRIKEVKACGMAEGTVISVRNLFFNTPARLKFMKSSETEAGHVGDLLTRLAISR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F ++      ++    + N +  ER++ ++G     +   L+    ++ + G  G 
Sbjct: 184 PDIRFIYTNDGKTVFR----ALNADLRERVATLLGRTLSQDLYPLDFCDGQLNVTGLVGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R  A+  Y +INGR ++DK +   +  AY   +  GRYPVVVL + +   +VDVNV
Sbjct: 240 PECSRSAASHVYTYINGRFIRDKVVQHAVLQAYRNFMERGRYPVVVLFISVPAAEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP----KTHL 355
           HP K  +RFR    + + I ++++  +       +  + +K  +S     A     +  L
Sbjct: 300 HPTKHEVRFREQGRVHDAIQEAVESVLRSSPWVKTQPVVQKTQASTSIAAARIAQVRESL 359

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
            +Y    T  Q          ++       DP    D  P  E E  ++       Q + 
Sbjct: 360 TQYRPQKTTQQSFKMSTPAVPASFRETSLPDPVPVADAAPAPEVERGYFSGLSVIGQFNA 419

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+ Q  + LVI+DQHAAHER+ FE+++    +  + SQ LL PE ++    E A+I E
Sbjct: 420 AYILCQDGNSLVIIDQHAAHERVAFERLKTQHAAMGVESQRLLFPETVEFSFKEGAVIRE 479

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           H  +L R+G   E FG +   +  +P +LS  +  + LRDI++E+     + + QD +E+
Sbjct: 480 HQTELDRVGFSLEEFGGSTWLLNAVPHLLSGNDYVKTLRDILEELQSLGRSRSFQDILED 539

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ILA +AC+  +R    +   E+  L ++M+    SS C HGRP    L L++IE++F R
Sbjct: 540 ILARIACHSVVRGSHCLSQQEIKALFQQMDTTEFSSNCPHGRPVLHTLTLAEIERMFKR 598


>gi|67459779|ref|YP_247403.1| DNA mismatch repair protein [Rickettsia felis URRWXCal2]
 gi|75535831|sp|Q4UJQ1|MUTL_RICFE RecName: Full=DNA mismatch repair protein mutL
 gi|67005312|gb|AAY62238.1| DNA mismatch repair protein MutL [Rickettsia felis URRWXCal2]
          Length = 609

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/609 (40%), Positives = 375/609 (61%), Gaps = 15/609 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDAGSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+ + DF NIHTFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKLDESDFLNIHTFGFRGEALPSIAAISKMLITSKKQGADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 121 QIKLIGGNEKQVTVSVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P++SF+ +    N  K   Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PEISFSLTHDDRNLLKFKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SIPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPLCAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F      K     
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIASDALQLFKNPLVNKQPSVS 360

Query: 358 YATSLTNTQE--KLFLQENRLSTNDLLPS-------DDPTYSEDNDPVEESEATHYQL-- 406
            A S+ +     +  +  +   T +                 E    +E  +  H Q   
Sbjct: 361 KAVSVNSKPADYRPAMSPSFKPTPNTACQKLIDTLPHAKIEQEVERRIEHEQQVHKQYKL 420

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A AQ+H  YIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L 
Sbjct: 421 GAAKAQLHTTYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIKQRLLIPEIVELP 480

Query: 467 -EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            E +   + E+ E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D   
Sbjct: 481 NERKADCLYENREKLYKLGLTLEKFGEKSIIVTEIPNILEDVNVQKLIQDLADHLSDFGE 540

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LKL
Sbjct: 541 NIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPFSGQCNHGRPTYIELKL 600

Query: 586 SDIEKLFGR 594
            DIE+LFGR
Sbjct: 601 KDIERLFGR 609


>gi|77918908|ref|YP_356723.1| DNA mismatch repair protein [Pelobacter carbinolicus DSM 2380]
 gi|123729468|sp|Q3A504|MUTL_PELCD RecName: Full=DNA mismatch repair protein mutL
 gi|77544991|gb|ABA88553.1| DNA mismatch repair protein MutL [Pelobacter carbinolicus DSM 2380]
          Length = 628

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 199/627 (31%), Positives = 330/627 (52%), Gaps = 37/627 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E + NQIAAGE++ERP+  +KEL+EN+LDA +SR++  +  GGK   ++TDNG 
Sbjct: 4   KIHILPESLCNQIAAGEVVERPASVVKELVENALDAGASRIQVDVENGGKRLIRVTDNGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  + ++RH TSK+    D   + T GFRGEALPSI AVS  TL +R  ++  G 
Sbjct: 64  GMSREDAFLCLERHATSKVRAEQDLFRLTTLGFRGEALPSIAAVSRFTLRTRLAEDVEGW 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  +       + PGTI+E+R+LFF  PAR  FL+ ++ E   I + + R+A++ 
Sbjct: 124 ELVVEGGTVKRSSAAGVPPGTIIEIRNLFFNTPARRKFLRRDETELGHIGETLTRLALSC 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-ITLQGYTG 238
           P+V F F       +++N      +  ER ++++G + + + + +  +  E + L G   
Sbjct: 184 PEVCFRFMHNGRMLWEVN---RQKSLVERAAELLGREAVRDMLPVERQGPEGMRLHGLIS 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  NR      + FINGR ++DK +   +   Y   +  GR+PV+VL LEIDP QVDVN
Sbjct: 241 SPRLNRSGLGGMFTFINGRFIRDKVVQHALADGYRNLLAKGRHPVLVLFLEIDPSQVDVN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RFR   ++ +FI+++++  + +   S          +   ++NA      + 
Sbjct: 301 VHPTKHEVRFRQQALVHDFIVKALRDHLQQVPTSAMPAPGNSPFTVPARENAASVKPDET 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP----------------------- 395
             +L +T       E    ++   PS        +                         
Sbjct: 361 KPALADTPAAFSAGEGSSRSDVPYPSASQVTETTDSYDAHDSGVEGASTAPPLSEEGLFS 420

Query: 396 --------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                    +   +  +       Q   +Y++ Q+   L+++DQHAAHER+ FE +R+ +
Sbjct: 421 VTADVRPSEQTENSGFFASLRLIGQYQNSYLVCQSEKDLILIDQHAAHERIGFEHLRKQY 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +  I  Q LL P +++       ++ E  + L RLG   E FG NA A++E+P +L + 
Sbjct: 481 LAGSIERQLLLFPLVLEFDFRLGRIVEEQRDSLFRLGFALENFGGNAFALKELPRMLKEA 540

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +  +L+RD++DE      +  ++  +E IL  MAC+  +R+ +++   EM  LL E++K 
Sbjct: 541 DAERLVRDVVDEFAAIGRSQAVEIELERILLKMACHAMVRAHQRLSFDEMQALLDELDKT 600

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           P SS C HGRPTF++  L ++E+LF R
Sbjct: 601 PFSSNCPHGRPTFLRWSLGELERLFKR 627


>gi|329904231|ref|ZP_08273710.1| DNA mismatch repair protein MutL [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548094|gb|EGF32819.1| DNA mismatch repair protein MutL [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 612

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 203/608 (33%), Positives = 330/608 (54%), Gaps = 22/608 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L +++I+QIAAGE++ERPS  +KEL+EN+LDA ++++   +  GG     ITDNG 
Sbjct: 10  SIAALPDQLISQIAAGEVVERPSAVVKELLENALDAGATQITIRLEQGGIKRIAITDNGR 69

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EIP+A+ RH TSKI+   D  N+ T GFRGEAL SI +++ LTL +R        
Sbjct: 70  GIPADEIPLALARHATSKIASLSDLENVATLGFRGEALASIASIAQLTLTTRTATAAHAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +++ S     +  P +  PGT ++V+DL++  PAR  FLKS+Q E     +V+RR+A++ 
Sbjct: 130 EMSGSQ---PAPVPSSGAPGTTIDVQDLYYNTPARRKFLKSDQTEYGHCAEVVRRIALSR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+ +             T  +   R + ++G DF    + L+E +  + L GY G+
Sbjct: 187 PDVAFSLTHNGKTVDHW----TLADMDRRSAHILGSDFSAARLSLDEAAGPLRLHGYAGL 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG A+  Y ++NGR V+DK +   +R+AY + +   RYP  VL L++DP  VDVNV
Sbjct: 243 PTASRGRADAQYFYVNGRFVRDKLLTHAVRSAYQDVLHGDRYPSYVLALDLDPALVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS---SFHQDNAPKTHLP 356
           HP+K  +RFR+   +  F+  ++ +A+++   +   ++     +    +H          
Sbjct: 303 HPSKIEVRFRDSRAVHQFVFHAVTRALSQTSATADGMVPAPQAAGAMPWHSTQQTPAQPY 362

Query: 357 KYATSLTNTQEKLFLQ----------ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
               S +   E    Q          E    +N+          + +  V  S    + L
Sbjct: 363 TRQGSFSQQAEPGIAQNSARYGALFGEKSGDSNEAFEQVAVAGWQPSPAVAPSGTAEFPL 422

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A AQ+   YI++Q   GLV+VD HAAHER+++E+ +   ++  +  Q LL P      
Sbjct: 423 GFALAQLQGIYILAQNLTGLVLVDMHAAHERILYEQFKTALDTDAVVVQPLLIPVTFHAD 482

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             E     E+   L  LG       P  +A+R IPA+L   +   L RD++ ++ +   +
Sbjct: 483 AVEVGTTAENQATLAALGFDIAALSPTTLAVRAIPALLKNADAQSLARDVLRDVREFGGS 542

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             L +R   +L T+AC+ ++R+ R +   EMN LLR+ME    + QCNHGRPT++++ LS
Sbjct: 543 RVLMERRNELLGTLACHTAVRANRILTLPEMNALLRQMEATERADQCNHGRPTWVQMALS 602

Query: 587 DIEKLFGR 594
           D+++LF R
Sbjct: 603 DLDRLFQR 610


>gi|260574506|ref|ZP_05842510.1| DNA mismatch repair protein MutL [Rhodobacter sp. SW2]
 gi|259023402|gb|EEW26694.1| DNA mismatch repair protein MutL [Rhodobacter sp. SW2]
          Length = 605

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/599 (41%), Positives = 384/599 (64%), Gaps = 19/599 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  IN+IAAGE++ERP+ A+KEL+EN+LDA + R+   +A GGK+  +++D+G G
Sbjct: 18  IRQLDEAAINRIAAGEVVERPASAVKELVENALDAGALRIGIDVADGGKTLIRVSDDGCG 77

Query: 63  MTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT+ ++P+A+ RH TSKI   D  NIH+FGFRGEALPS+GAV  LTL SR          
Sbjct: 78  MTAADLPLALSRHATSKIDGSDLLNIHSFGFRGEALPSLGAVGRLTLTSRAAGAEAATLS 137

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
              G ++++VRP A+  GT+VE+RDLFF  PARL F+++++ E   I DV++R+A+A P+
Sbjct: 138 V-EGGRMAAVRPAALTRGTVVELRDLFFATPARLKFMRTDRAEMQAIADVVKRLALAQPQ 196

Query: 182 VSFTFS--TIKSNRYKMNFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQG 235
           V FT    +    R         G+F +    R+++V+G DF  NA+ ++   + + L G
Sbjct: 197 VGFTLRDVSGGEGRLLFRADPEPGDFFDALHGRVARVLGADFAENALRIDVAHDGLRLLG 256

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y  +PT++RG++   ++F+N R V D+ +   +R  Y + +   R+P  VL L+ DP+QV
Sbjct: 257 YAALPTYSRGSSVAQFLFVNSRPVLDRQLFGALRAGYMDVLSRDRHPAAVLNLQCDPQQV 316

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK+ +RFR P ++R  ++  +++A+   G   S+ ++ + +++F  +  P+ + 
Sbjct: 317 DVNVHPAKAEVRFREPALVRGLVVSGLRQALAAAGHRASTTVAGETLTAFRPE--PRIYQ 374

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
               +  T  Q  L  Q    +            +   +    S+     LG A AQ+H+
Sbjct: 375 MDRPSQPTLAQ-ALHWQAPGFAEA--------PQARFEEQAPASDEPPRPLGAAKAQLHE 425

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           NYII+QT  G+VIVDQHAAHERL++++++   +S+ I +Q LL PEI+ L   + + +++
Sbjct: 426 NYIIAQTASGMVIVDQHAAHERLVYQRLKAQRDSSGIAAQALLIPEIVSLSPADASRLLD 485

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              DL  LG+  E FG NA+A+RE PAIL + +   LLRDI+D++ D   +  +Q R++ 
Sbjct: 486 AAADLAALGLVIEPFGGNAVAVRETPAILGRVDAQALLRDILDDLADLGDSTRVQARMDA 545

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +L+ MAC+GS+RSGR+M++ EMN LLREME  P S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 546 VLSRMACHGSVRSGRQMRAEEMNALLREMEATPLSGQCNHGRPTYVELKLADIERLFGR 604


>gi|158424017|ref|YP_001525309.1| DNA mismatch repair protein [Azorhizobium caulinodans ORS 571]
 gi|172047960|sp|A8I6D2|MUTL_AZOC5 RecName: Full=DNA mismatch repair protein mutL
 gi|158330906|dbj|BAF88391.1| DNA mismatch repair protein [Azorhizobium caulinodans ORS 571]
          Length = 625

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/624 (38%), Positives = 381/624 (61%), Gaps = 30/624 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L   +I++IAAGE++ERP+ A+KEL+EN++DA ++ +E ++ GGG+   +I+DNG
Sbjct: 1   MTIRRLPPVLIDRIAAGEVVERPAAAVKELVENAIDAGATEIEVLVVGGGREMIRISDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI-SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM+++E+ +AV+RH TSK+ ++D   I T GFRGEALPSIGAV+ L++ SRP       
Sbjct: 61  SGMSADELSLAVERHATSKLPTEDLLAISTLGFRGEALPSIGAVARLSIASRPKSAPHAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G  ++  RP A+N GT VEVRDLFF  PARL FLKS++ E     DV+RR+A+A 
Sbjct: 121 EIRVEGGVVTPPRPAALNGGTRVEVRDLFFATPARLKFLKSDRAEAAAAADVVRRLALAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN-GNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V+FT  T          +S +      R++ V+G +   N + +  +   + L G  G
Sbjct: 181 PDVAFTLMTDDRQPLTWVARSMDEAGRAARVADVLGAEAGRNLIPVVGERGGVRLVGLAG 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT+++ N+   ++F+NGR V+DK ++  +R AY++ +P  RYPV+ L L +DPR+VDVN
Sbjct: 241 LPTYSKANSLSQFLFVNGRPVRDKLLMGALRAAYSDLLPSDRYPVLALFLSLDPREVDVN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI----SSFHQDNAPKTH 354
           VHPAK+ +RFR+   +R  +++++  A+  +  ST+  ++ +++    +   +   P   
Sbjct: 301 VHPAKTEVRFRDGGNVRALLVRTLTDALAARVPSTAGTIADRLVELARTPELEPARPAAA 360

Query: 355 LPKYATSLTNT--------QEKLFLQENRLSTNDLLPSDDPTYSE--------------- 391
           +P++               +       N    +  L ++  +++E               
Sbjct: 361 IPEFRPYRAEPMPAGGYDWRASPARPLNVAEPDGALEAEMESFAEAVQASFDVGMPAADA 420

Query: 392 -DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
             +  V E+      LG A AQ+H+ YI++QT +G+V+VDQHAAHERL++EK++      
Sbjct: 421 RADAAVPETGDLDRPLGAARAQLHETYIVAQTREGMVLVDQHAAHERLVYEKLKAALERD 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            +  Q LL P ++DL   E   + E   DL  LG+  E FG  A+ +RE+PA+L+K ++ 
Sbjct: 481 GVARQGLLVPAVVDLDPAEADRLAERAGDLAALGLVIEPFGIGAVLVREVPALLAKADVT 540

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +L+RD+ +   +      L+ R+ ++ ATMAC+GS+R+GR+++  EMN LLREME+ PN+
Sbjct: 541 KLVRDVAEHSAEWDDALPLERRLLHVAATMACHGSVRAGRRLRVEEMNALLREMEETPNA 600

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
            +CNHGRPTFI L L D+EKLF R
Sbjct: 601 GECNHGRPTFITLSLKDVEKLFAR 624


>gi|319898390|ref|YP_004158483.1| DNA mismatch repair protein MutL [Bartonella clarridgeiae 73]
 gi|319402354|emb|CBI75893.1| DNA mismatch repair protein MutL [Bartonella clarridgeiae 73]
          Length = 612

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/611 (43%), Positives = 390/611 (63%), Gaps = 17/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LSE IINQIAAGE+IERP+  +KELIEN++DA ++R+E VIA GGK+  +++DNG
Sbjct: 1   MIIRHLSETIINQIAAGEVIERPTNVVKELIENAIDAGANRIEIVIANGGKNLIKVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +++ +A+ RHCTSKI+DD  NI   GFRGEALPSIG+VS L L SR   +++ A+
Sbjct: 61  CGIPEDQLTLAISRHCTSKITDDVHNICFLGFRGEALPSIGSVSKLKLTSRTQNSDSAAE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++  KI   +P A NPGTIVEVRDLFF  PARL F+KS++ ET+ I D I+R+AIA+P
Sbjct: 121 IIVTAGKIEGPKPSAANPGTIVEVRDLFFVTPARLKFMKSDRAETSSIIDTIKRIAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            + F+ + I     +      N     +RI+Q++G++F +N++ L+ K   + L G+ G+
Sbjct: 181 HIRFSLAGIDRASMEFPAMEQNTQGQLQRITQIMGKEFASNSLILDAKRESVHLTGFAGL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNR N+   + ++NGR V+DK +   IR AYA+ I   R+ + +L + + P  VDVNV
Sbjct: 241 PSFNRSNSLHQFAYVNGRPVRDKLLWGAIRGAYADVIARDRHAIAILFINLPPTDVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD------NAPKT 353
           HPAK  +RFR+P++IR  II +I++A+++ G+  +S  S+ M+++F             +
Sbjct: 301 HPAKMDVRFRDPSLIRGLIIGAIREALHQTGVRPTSTGSEAMLAAFRTQSLETVKTHQTS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND----------PVEESEATH 403
                   L      +F +   ++++  L  D     E              V  SE  H
Sbjct: 361 SYGARPCHLEPELTSIFHKPLNINSSIDLQEDTIPIMECLSRPSGDTRATINVSTSEELH 420

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           Y LG A AQIH+NYI+SQT + L+IVDQHAAHERL++E ++    S  + SQ LL PEI+
Sbjct: 421 YPLGAARAQIHKNYIVSQTQNSLIIVDQHAAHERLVYEALKNALYSKPLPSQLLLIPEIV 480

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +L E +   ++ H + L + G+  E FG  AIA+ E P++L + NI  L++D+ DE  + 
Sbjct: 481 ELSEEDATCLLSHKDALKKFGLGIESFGIGAIAVHETPSMLGEINIQALIKDLADEAAEY 540

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            T   L+  ++ + ATMAC+ SI SGR +   EMN LLR++E  PNS  CNHGRPT+I+L
Sbjct: 541 DTIDNLKGMLDYVAATMACHSSICSGRLLHPEEMNALLRQIEATPNSGTCNHGRPTYIEL 600

Query: 584 KLSDIEKLFGR 594
           KL+DIE+LFGR
Sbjct: 601 KLADIERLFGR 611


>gi|298290347|ref|YP_003692286.1| DNA mismatch repair protein MutL [Starkeya novella DSM 506]
 gi|296926858|gb|ADH87667.1| DNA mismatch repair protein MutL [Starkeya novella DSM 506]
          Length = 611

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/610 (38%), Positives = 369/610 (60%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R L   ++++IAAGE++ERP+ A+KE++EN+LDA ++R+E VI GGG+   ++TD+G
Sbjct: 1   MPLRLLPSTLVDRIAAGEVVERPAAALKEIVENALDAGATRIEVVIDGGGRRLMRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI-SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM+++E+ +AV+RH TSK+ ++D  +I T GFRGEALPSIGAV+ L++ SRP  ++T  
Sbjct: 61  CGMSADELALAVERHATSKLDTEDLLSIATLGFRGEALPSIGAVARLSITSRPRGSDTAH 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   S+V+P A+  GT VEVRDLFF  PARL FLKSE+ ET    D ++R+A+A 
Sbjct: 121 EIRVEGGAKSAVKPAALGFGTRVEVRDLFFATPARLKFLKSERAETAAAVDAVKRLALAR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V F   T          +S +      RI+ V+G +   NA++++       L G  G
Sbjct: 181 PDVGFILVTDDRPPVTWPARSADAAGRRARIADVLGHEVGANALDIDGLREGARLSGLAG 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT+ + N+   Y+F+NGR V+DK ++  IR AYA+ +P  R+PV  L L++DP +VDVN
Sbjct: 241 LPTYAKANSLSQYLFVNGRPVRDKVLIGAIRAAYADLLPSDRHPVTALFLDLDPHEVDVN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFR+   +R  I++++  A+      T+S  ++K+      +       P  
Sbjct: 301 VHPAKTEVRFRDAGNVRALIVRTLTDALALGVPRTASTAAEKLAQFARPEFRQGAGNPPR 360

Query: 359 ATS--LTNTQEKLFLQENRLSTNDLLPSDD------------PTYSEDNDPVEESEATHY 404
             +   T +     +     S                        +  N      +    
Sbjct: 361 PGNYDWTRSWAAPDVAPREASPAGFREEAAGFDFGLGLALAPSADARANAAPPAPDLMER 420

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A AQ+H+ YII+QT DG+V++DQHAAHER+++EK++       +  Q LL P +++
Sbjct: 421 PLGAARAQLHETYIIAQTKDGVVVIDQHAAHERIVYEKLKAAMERDGLARQMLLVPLVVE 480

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   + A + E    L +LG+  E FGP A+ +RE+P++L   ++  L+ ++ +   +  
Sbjct: 481 LDPSDAARLAERAAALEKLGLVLEPFGPGAVLVREVPSLLGDADVCALVTELAEHAAEWD 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L+ R+ +I ATMAC+GS+R+GR+++  EMN LLREME+ PN++QCNHGRPTF+ L 
Sbjct: 541 DALPLERRLLHIAATMACHGSVRAGRRLRVEEMNALLREMEETPNAAQCNHGRPTFVTLA 600

Query: 585 LSDIEKLFGR 594
           L+DIE+LF R
Sbjct: 601 LADIERLFAR 610


>gi|157965005|ref|YP_001499829.1| DNA mismatch repair protein [Rickettsia massiliae MTU5]
 gi|157844781|gb|ABV85282.1| DNA mismatch repair protein MutL [Rickettsia massiliae MTU5]
          Length = 615

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/611 (40%), Positives = 369/611 (60%), Gaps = 17/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  INQIAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 5   MTIKFLSESTINQIAAGEVIERPASVVKELVENAVDASSTKIDIILERAGKNLIIISDDG 64

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NIHTFGFRGEALPSI A+S + + S+    +   
Sbjct: 65  IGMTDKELEIAVERHTTSKFDESDFLNIHTFGFRGEALPSIAAISKMLITSKKRDADKAF 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 125 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVDVVKKIALAH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P+ SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+   ++ GYT
Sbjct: 185 PETSFSLTHDGKNLLKLKGQNKDAKTNLKQRIIDVIGDDFIKNAAYIDFKTPNFSICGYT 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 245 SSPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPLCAIFLQIDPQLVDV 304

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TSS           ++       P 
Sbjct: 305 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSSTTIASDALELFKNPLVNKQSPV 364

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPT-----------YSEDNDPVEESEATHYQL 406
                 N++   +      + N +  +                 E  + +E  + T  Q 
Sbjct: 365 SKVIKVNSKSADYRPTTHSTLNTVPQNHVCQKLIDTLSHAKIEQEVENRIEHEQQTRKQY 424

Query: 407 --GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
             G A AQ H  YIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++
Sbjct: 425 KLGAAKAQFHTTYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIKQRLLIPEIVE 484

Query: 465 LL-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           L  E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D 
Sbjct: 485 LPNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDF 544

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+L
Sbjct: 545 GKNIALTELIEHVTKTYACHYSIRAGRKLSADEMNALLRQMENTPLSGQCNHGRPTYIEL 604

Query: 584 KLSDIEKLFGR 594
           KL DIE+LFGR
Sbjct: 605 KLKDIERLFGR 615


>gi|88810490|ref|ZP_01125747.1| DNA mismatch repair protein [Nitrococcus mobilis Nb-231]
 gi|88792120|gb|EAR23230.1| DNA mismatch repair protein [Nitrococcus mobilis Nb-231]
          Length = 632

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 209/617 (33%), Positives = 350/617 (56%), Gaps = 24/617 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++++L  +++NQIAAGE+IERP+  +KEL+EN+LDA++ R+E V+ GGGK   ++ D+G 
Sbjct: 14  RVQRLPPQLVNQIAAGEVIERPAAVVKELVENALDADAGRIEIVVEGGGKRLIRVRDDGV 73

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++  AV RH TSKI D  D   I + GFRGEALPSI +V+ LTL +R    + G 
Sbjct: 74  GMGREDLRSAVGRHATSKIRDLIDLERIASLGFRGEALPSIASVARLTLTTRSRAEDHGW 133

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++ ++G ++   V P    PGT V VRDLF  IPAR  FL+++Q E   I  +++R+A++
Sbjct: 134 RLELNGGELLDEVAPAPHPPGTSVVVRDLFHNIPARRKFLRTDQTELRHIQGLVKRIALS 193

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V F  +      Y++    T+     R+++++G +F+  ++ L+ ++  + L G+ G
Sbjct: 194 RPDVGFELNCHGRCNYRLAPTGTSVEQEARLAELLGREFVGQSLVLDAEAAGLRLHGWIG 253

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P+  R   +  Y+++NGR ++D+     IR AYA+ +   ++PV VL L +DP +VDVN
Sbjct: 254 LPSAARAQTDLQYLYLNGRMIRDRLAGHAIRRAYADLLYKEKHPVYVLYLGMDPAEVDVN 313

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS----SFHQDNAPKTH 354
           VHP+K  +RFR P ++ +F+   + +A+     +      +           Q+  P  H
Sbjct: 314 VHPSKYEVRFREPRLVYDFLFHQLHRALAHPNGAAEGRRYRAAPKRTCVDSPQEQQPTCH 373

Query: 355 LPKYATSLTNTQEKLFL---QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL----- 406
            P  ++      E   L        S  + + + + T+  + D +  S A          
Sbjct: 374 SPWQSSIAFPVAEATQLYAAAGEARSAGEPIGNGESTWGSEGDSLALSRALPQHPVPAAG 433

Query: 407 ---------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                    G A AQ+H  Y++S+   GL++VD HAAHER+++E+++ + +   +  Q L
Sbjct: 434 RGEEATPPLGYAVAQLHGVYVLSEDAAGLILVDMHAAHERIVYERLKDELDREGLAGQAL 493

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P  + +   E     +      RL  + +R  P+ + +R IPA+L + +I  LLRD++
Sbjct: 494 LVPLRVGVTPAEADAAEDCAALFRRLEFEVDRAAPDVLVVRRIPALLGQIDITALLRDVL 553

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             ++       L+  I  +LATMAC+GS+R+ R++   EMN LLR+ME+  N  QCNHGR
Sbjct: 554 SGLLIQGVGGQLEAVINQVLATMACHGSVRAQRRLTITEMNALLRDMERTRNIGQCNHGR 613

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT+ +L L+++++LF R
Sbjct: 614 PTWTRLTLAELDRLFLR 630


>gi|20807805|ref|NP_622976.1| DNA mismatch repair ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|25090753|sp|Q8RA70|MUTL_THETN RecName: Full=DNA mismatch repair protein mutL
 gi|20516363|gb|AAM24580.1| DNA mismatch repair enzyme (predicted ATPase) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 590

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 181/596 (30%), Positives = 315/596 (52%), Gaps = 13/596 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L EK +N+IAAGE++ERP+  +KEL+ENS+DA S  +   I  GG  + ++TD+G 
Sbjct: 3   KIHLLDEKTVNKIAAGEVVERPASIVKELVENSIDAGSKNITVEILEGGIPYIKVTDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI   +D  NI T GFRGEAL SI AVS + L ++      G 
Sbjct: 63  GMNEIDAVLAFERHATSKIRSDEDLFNITTLGFRGEALASIAAVSKVVLQTKEENETFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G KI          GT VEV+D+FF  PAR  FLK    E   +T+V+ R+ ++ 
Sbjct: 123 RLVVEGGKILEKTRCGCQKGTSVEVKDVFFNTPARRKFLKRPSTEAMYVTEVVTRLCLSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF +   K  ++     S NG+  + I ++ G++  +  +    ++ ++ ++ +   
Sbjct: 183 PGISFKYVKDKKVQF---ITSGNGSIEDVILRLFGKEVHSALIFSEFEAEDLKVKAFATK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              N  N N  + ++NGR V++K + + +  A+   +P  RYP V L LEI+PR +DVN+
Sbjct: 240 NFLNYSNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYVPSDRYPGVFLYLEINPRFIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLPKY 358
           HP+K  ++F +   I   + ++I++A+ +  +     L K + +   Q     K  LP +
Sbjct: 300 HPSKLEVKFSDDRRIFESVYRTIREALRESNLIPEVKLEKDLKNEEGQIGEQVKLSLPLF 359

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                     +F++E   +   +  +     S D+    E              +   Y+
Sbjct: 360 EVKEKTDDGAIFVREEVKTEEKIDKAPKHESSSDS----ERNVKRLSDIRIVGTLFSTYV 415

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I +  D   I+DQHAAHER+++EK+   +   ++ S+ +  P +++L  G+  ++ +  E
Sbjct: 416 IVEKGDVFYIIDQHAAHERILYEKLVSQYE--RVQSRQVTFPIVVELQPGDMEIVGQERE 473

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L++LG   E FG N++ +RE+P IL +    +L  +I++ + D   +  +  + E I A
Sbjct: 474 LLYKLGYVFEEFGNNSVVLREVPVILGQPEAKKLFVEIVERLRDKDFSSKVSFKEEEI-A 532

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC  ++++   +   E+ +L  +++   N   C HGRP  I +  + +EK+F R
Sbjct: 533 TMACKAAVKAMDTLSENEIYKLFEDLKIAENPYTCPHGRPVIISMTKTQLEKMFKR 588


>gi|254479236|ref|ZP_05092581.1| DNA mismatch repair protein MutL [Carboxydibrachium pacificum DSM
           12653]
 gi|214034837|gb|EEB75566.1| DNA mismatch repair protein MutL [Carboxydibrachium pacificum DSM
           12653]
          Length = 590

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 181/596 (30%), Positives = 315/596 (52%), Gaps = 13/596 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L EK +N+IAAGE++ERP+  +KEL+ENS+DA S  +   I  GG  + ++TD+G 
Sbjct: 3   KIHLLDEKTVNKIAAGEVVERPASIVKELVENSIDAGSKNITVEILEGGIPYIKVTDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI   +D  NI T GFRGEAL SI AVS + L ++      G 
Sbjct: 63  GMNEIDAVLAFERHATSKIKSDEDLFNITTLGFRGEALASIAAVSKVVLQTKEENETFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G KI          GT VEV+D+FF  PAR  FLK    E   +T+V+ R+ ++ 
Sbjct: 123 RLVVEGGKILEKTRCGCQKGTSVEVKDVFFNTPARRKFLKRPSTEAMYVTEVVTRLCLSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF +   K  ++     S NG+  + I ++ G++  +  +    ++ ++ ++ +   
Sbjct: 183 PGISFKYVKDKKVQF---ITSGNGSIEDVILRLFGKEIHSALIFSEFEAEDLKVKAFATK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              N  N N  + ++NGR V++K + + +  A+   +P  RYP V L LEI+PR +DVN+
Sbjct: 240 NFLNYSNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYVPSDRYPGVFLYLEINPRFIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLPKY 358
           HP+K  ++F +   I   + ++I++A+ +  +     L K + +   Q     K  LP +
Sbjct: 300 HPSKLEVKFSDDRRIFESVYRTIREALRESNLIPEVKLEKDLKNEEGQIGEQVKLSLPLF 359

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                     +F++E   +   +  +     S D+    E              +   Y+
Sbjct: 360 EVKEKTDDGAIFVREEVKTEEKIDKAPKHESSSDS----ERNVKRLSDIRIVGTLFSTYV 415

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I +  D   I+DQHAAHER+++EK+   +   ++ S+ +  P +++L  G+  ++ +  E
Sbjct: 416 IVEKGDVFYIIDQHAAHERILYEKLVSQYE--RVQSRQVTFPIVVELQPGDMEIVGQERE 473

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L++LG   E FG N++ +RE+P IL +    +L  +I++ + D   +  +  + E I A
Sbjct: 474 LLYKLGYVFEEFGNNSVVLREVPVILGQPEAKKLFVEIVERLRDKDFSSKVSFKEEEI-A 532

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC  ++++   +   E+ +L  +++   N   C HGRP  I +  + +EK+F R
Sbjct: 533 TMACKAAVKAMDTLSENEIYKLFEDLKIAENPYTCPHGRPVIISMTKTQLEKMFKR 588


>gi|159899518|ref|YP_001545765.1| DNA mismatch repair protein MutL [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892557|gb|ABX05637.1| DNA mismatch repair protein MutL [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 631

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 182/633 (28%), Positives = 319/633 (50%), Gaps = 43/633 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   +  QIAAGE++ERP+  +KELIENS+DA ++ +      GGK   +I DNG
Sbjct: 1   MPIRVLDPTLAAQIAAGEVVERPASVVKELIENSVDAGATEIRVEAREGGKRELRIQDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ S+E+  A  RH TSK+++  D  +I T GFRGEALPSI +V+ +T ++R   +  G
Sbjct: 61  CGIASDEVETAFLRHATSKVTEIEDLFSIRTLGFRGEALPSIASVAQVTCLTRTAADEVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G +I +  P   + GT   +R+LF+  PARL F++S+  E + I+ ++ + A+A
Sbjct: 121 TELRIAGGEIQAKTPRGCSVGTTFTIRNLFYNTPARLKFMRSDATEMSQISTIVTQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE----KSNEITLQ 234
           YP + +T         +      NG   + + ++ G D     + ++     +   + + 
Sbjct: 181 YPNIRWTLLLDGKLALQ---TPGNGRLLDALIELYGIDVGREMISVDRTSEAEDETVRVH 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDK-FILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           G+   P+  R   +  ++F+N R ++ +  ++  I  AY   +  GR+P+V L +E++P 
Sbjct: 238 GFVSQPSTFRAARSYMHLFVNQRWIKPQGNLVYMIEEAYHTLLMKGRHPIVALNIELEPE 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------ 347
            VDVNVHP KS ++FRN + +   + +++++A+  +    +        S   +      
Sbjct: 298 AVDVNVHPTKSEVKFRNQSHVYGALTKAVREALAAQSTIRAWTGFGANESVNRRVELRSP 357

Query: 348 --------------DNAPKTHLPKYAT------------SLTNTQEKLFLQENRLSTNDL 381
                         D+AP    P+                    Q +        +++ L
Sbjct: 358 NGERRGSSNDAPLFDDAPAAPRPQVNNYPDDDFDSTVNLPPIAKQARFETPTTSQTSSFL 417

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
            P            +         +     Q+++ YI+++++DG+ +VDQHAAHER+++E
Sbjct: 418 PPQQQAFDPAYAPSMPAPGEAKLPMLRVVGQVNETYIVAESSDGMYLVDQHAAHERVVYE 477

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           ++  +     I  QTL+  + I+L      L+  H  DL + G +AE FG   + +R +P
Sbjct: 478 RLMAEHQDVPIERQTLMLAQPIELPPAVTRLLSAHLADLEQWGFEAEEFGEGTLMLRAVP 537

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           + L    I   L +I D +       +  DR E +L T+AC+ SIR+G+ +   EM +LL
Sbjct: 538 SGLHVGQIATALMEIADHLSYEGGATS-DDRREKMLTTIACHSSIRAGKTLTHEEMRQLL 596

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++E+      C HGRPT +++    IE+ FGR
Sbjct: 597 QQLERCEMPRTCPHGRPTMLQITQGQIERQFGR 629


>gi|157826372|ref|YP_001494092.1| DNA mismatch repair protein [Rickettsia akari str. Hartford]
 gi|166232102|sp|A8GQA9|MUTL_RICAH RecName: Full=DNA mismatch repair protein mutL
 gi|157800330|gb|ABV75584.1| DNA mismatch repair protein [Rickettsia akari str. Hartford]
          Length = 609

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/609 (41%), Positives = 373/609 (61%), Gaps = 15/609 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSENTINRIAAGEVIERPASVVKELVENAVDAGSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+ + DF NIHTFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKLDESDFLNIHTFGFRGEALPSIAAISKMLITSKKQGYDKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL+S++ E     DV++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRSDKTELVATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K    + +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDDRNLLKFKGHNKDVETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SIPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPLCAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+      TS+ ++   +  F      K     
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNTSHVTSTTIASDALQLFKNHLVNKQPSVS 360

Query: 358 YATSLTN--TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE---------ATHYQL 406
            A S+ +  T  +  +  +  ST +                +E E            Y+L
Sbjct: 361 KAVSVNSKPTDYRPAMSPSFKSTPNTDCQKLIDTLPHAKIEQEVERRIEREQQAHKQYKL 420

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A AQ+H  YIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L 
Sbjct: 421 GAAKAQLHTTYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIRQRLLIPEIVELP 480

Query: 467 -EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            E     + E+ E L++LG+  E+FG  +I + EIP IL   N+ +L+ D+ D + D   
Sbjct: 481 NERNADSLYENREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIHDLADHLSDFGE 540

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LKL
Sbjct: 541 NIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPFSGQCNHGRPTYIELKL 600

Query: 586 SDIEKLFGR 594
            DIE+LFGR
Sbjct: 601 KDIERLFGR 609


>gi|90416479|ref|ZP_01224410.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2207]
 gi|90331678|gb|EAS46906.1| DNA mismatch repair protein [marine gamma proteobacterium HTCC2207]
          Length = 625

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 213/623 (34%), Positives = 331/623 (53%), Gaps = 34/623 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +  +E  I  GG    +I D+G G
Sbjct: 4   IKILSPQLANQIAAGEVVERPASVLKELVENSLDAGAQSIEIDIEQGGVKLIRIRDDGGG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKI D  D   + T GFRGEAL SI +VS L+L S     ++  +
Sbjct: 64  IDHDDLALALSRHATSKIDDLEDLEAVATLGFRGEALASIASVSRLSLTSN-NGGSSAWR 122

Query: 121 IAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G  +     P +   GT VEVRDLFF  PAR  FL++E+ E N I D I+++A++ 
Sbjct: 123 AISEGRDMQVEVTPASHPQGTSVEVRDLFFNTPARRKFLRTEKTEYNRIDDSIKKLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+F     +  +  +    T     +R++ + G  F+  A+ ++     + L G+ G+
Sbjct: 183 FDVAFNLRHNQRAQLSLRPAKTQLEQEKRVADICGTTFMEQALYVDNTRPGLRLWGWIGL 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF+R  A+  + F+NGR ++DK +   +R AY + +  GR+P  VL LEI P  VDVNV
Sbjct: 243 PTFSRSQADLQHFFVNGRCIRDKVVSHAVRQAYQDVLYHGRHPAFVLFLEITPADVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HP K  +RFR    I +FI  +++KA+ +        L       F  D + +       
Sbjct: 303 HPTKHEVRFRESGSIHSFISSTLKKALAED--RPQDHLQSNSTGEFPSDGSAQHTGGGGQ 360

Query: 353 ----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---------- 398
                + P          +      +R +  +         +      +           
Sbjct: 361 FSGMVNQPDPNWQAAPQSQPAMQFSSRPNFGNSSSGAMSGSAGSMQNYQSLYSTSGINLP 420

Query: 399 -------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                   +     LG A AQ+   YI+++  +GL+IVD HAAHER+ +E+M+  F+   
Sbjct: 421 ESGSELGDQQDIPPLGYAIAQLKGIYILAENREGLIIVDMHAAHERITYERMKSAFDDQG 480

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + SQ LL PE + + + E     +H+E   +LG   ER    ++ +REIPAIL    +  
Sbjct: 481 LISQPLLVPESLAVSQREADAAEQHNEVFAKLGFVVERAAAESVIVREIPAILRGSEVEA 540

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           LLRD++ ++++   +  ++D I  IL+TMAC+GS+R+ RK+   EMN LLR+ME    S 
Sbjct: 541 LLRDVLSDLLEHGNSERIRDHINEILSTMACHGSVRANRKLSVTEMNALLRDMEATERSG 600

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+ +L L  ++KLF R
Sbjct: 601 QCNHGRPTWSQLTLDQLDKLFLR 623


>gi|194290629|ref|YP_002006536.1| DNA mismatch repair protein [Cupriavidus taiwanensis LMG 19424]
 gi|193224464|emb|CAQ70475.1| methyl-directed mismatch repair protein [Cupriavidus taiwanensis
           LMG 19424]
          Length = 660

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 193/648 (29%), Positives = 325/648 (50%), Gaps = 62/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++++   +  GG     ITDNG 
Sbjct: 18  PIRPLPDQLISQIAAGEVVERPASVVKELLENALDAGATQLGIRLEEGGVRRIVITDNGC 77

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ + E+P+A+ RH TSKI+  D+  ++ T GFRGEAL SI +VS +TL SR   +    
Sbjct: 78  GIPAAELPVALMRHATSKIASLDELESVLTLGFRGEALASIASVSQMTLTSRTAADAHAT 137

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q++       +++P +   GT V+V+ L+F  PAR  FLK+EQ E     +++RR+A+A 
Sbjct: 138 QVSADS---GALQPASGGVGTTVDVQHLYFNTPARRKFLKTEQTELGHCLEMVRRVALAR 194

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +           N     G+   R +QV+G DF    + L+E ++ ++L G+ G+
Sbjct: 195 PDVTISVHHNGKPLEHWNA----GDVATRTAQVLGNDFARARLALDEHADTLSLYGFAGL 250

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +RG  +Q Y F+NGR V+DK +   +R+AY + +   R+P  VL L++ P  VDVNV
Sbjct: 251 PTASRGRPDQQYFFVNGRFVRDKLLNHAVRSAYQDVLHGDRFPSYVLCLDLPPEMVDVNV 310

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-QDNAPKTHLPKY 358
           HP+K  +RFR    +  F+  ++Q+ + ++  +    L             A     P  
Sbjct: 311 HPSKIEVRFRESRAVHQFVYHAVQRCLARQAGANGDSLHTDADGEITLPPGAATPAGPAR 370

Query: 359 ATSLTNTQ-------------------------EKLFLQENRLSTNDLLPSDDPTYSEDN 393
             + T  Q                          +      R        +     +   
Sbjct: 371 PGAGTPAQWINYSAARQTELGIAQPRQAYLGMVREATAPAPRPYGAPASGAGGWAGASAQ 430

Query: 394 DPVEESEATHYQLGIACAQIHQ------------------NYIISQTTDGLVIVDQHA-- 433
            P   ++    + G     + +                   Y I+Q     V+       
Sbjct: 431 PPAWLADVQAARAGDPPGLLDRLPPAPAPDETGAADEHPLGYAIAQLHGIYVLAQNARGL 490

Query: 434 -------AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
                  AHER+++E+++   ++ ++  Q LL P  +     E  +  EH E L  LG  
Sbjct: 491 VLVDMHAAHERILYEQIKAALDARELAVQPLLIPVTLPASPVEIGVAEEHQETLTLLGFD 550

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
                P  +A+R +PA+L + +   L RD++ ++     +  L +R   +LAT+AC+ ++
Sbjct: 551 IAPVSPTTLAVRAVPALLQQADAEALARDVLRDLHAYGGSRVLAERRNELLATLACHSAV 610

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ RK+   EMN LLR+ME+   + QCNHGRPT+++L ++++++LF R
Sbjct: 611 RANRKLTVEEMNALLRQMEQTERADQCNHGRPTWVQLTVTELDRLFLR 658


>gi|261392296|emb|CAX49822.1| DNA mismatch repair protein MutL [Neisseria meningitidis 8013]
          Length = 658

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/658 (32%), Positives = 342/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIKLALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVSNAGEVLHDITGVTPAPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                   +++     K  +      + KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFDRASNYPTGNKPDTRNAFGASGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++    I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRTVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|239501497|ref|ZP_04660807.1| DNA mismatch repair ATPase [Acinetobacter baumannii AB900]
          Length = 650

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/639 (32%), Positives = 342/639 (53%), Gaps = 46/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------------- 335
           NVHP K  IRF N   +  F+    ++ + +   +++                       
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDTQNLSVQPQPKYQ 369

Query: 336 ---VLSKKMISSFHQDNAPKTHLPKYA--TSLTNTQEKLFLQENRLSTND---------- 380
               L +   ++    + P  + P     T   N++ +      +    +          
Sbjct: 370 EQFTLHRTAQAADTAVDKPNGYQPSTELLTDFNNSRPQAVHYAEQTPKYNGSAQLNNALK 429

Query: 381 ----LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                L      +S D +    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHE
Sbjct: 430 TYLAPLRDQPTNFSVDENIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHE 489

Query: 437 RLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           R++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   +
Sbjct: 490 RILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQV 549

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   
Sbjct: 550 IVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLS 609

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 EMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 648


>gi|268316526|ref|YP_003290245.1| DNA mismatch repair protein MutL [Rhodothermus marinus DSM 4252]
 gi|262334060|gb|ACY47857.1| DNA mismatch repair protein MutL [Rhodothermus marinus DSM 4252]
          Length = 608

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 176/600 (29%), Positives = 308/600 (51%), Gaps = 12/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR + E + N+IAAGE+++RP+  +KEL+EN+LDA +  +  ++   GK+  Q+ D+G G
Sbjct: 12  IRIMPESLANKIAAGEVVQRPASVVKELVENALDAGARHITVILKDAGKTLVQVVDDGCG 71

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +  QRH TSKI   DD   IHT GFRGEAL SI AV+ + L ++  Q+  G +
Sbjct: 72  MSPADARLCFQRHATSKIRTIDDLERIHTLGFRGEALASIAAVARVELKTKRAQDAAGYR 131

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G ++ +  P A   GT V VR+LF+ +PAR NFLK+   E   I +  + +A+++P
Sbjct: 132 VQIEGGQLIAAEPCATANGTSVAVRNLFYNVPARRNFLKTPATEFKHIIETFQVLALSHP 191

Query: 181 KVSFTFSTIKSNRYKMNF---QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +V FT        Y++      S       RI  + G ++    + + E ++ ++++G+ 
Sbjct: 192 EVGFTLIHDDVEIYRLVPETDPSPAERLRRRIGTLFGPEYALQTIPVEETTSYLSVRGFL 251

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +R +  + + F+N R V+ +++   + ++Y   IP G +P  VL LE+DP+ VDV
Sbjct: 252 GRPELHRKSRGEQFFFVNRRYVRHRYLEHAVTSSYEHLIPEGAHPFFVLFLELDPKHVDV 311

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K+ ++F +   I   +   +++A+    +     L      +   D A     P+
Sbjct: 312 NVHPTKAEVKFDDERGIYGVLRAIVRRALGMADLVPQ--LESAAAVTVPSDVAQTAAAPR 369

Query: 358 YATSLTNTQEKLFLQENR---LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
              S          + +R       +++          +    ES+    +      Q+H
Sbjct: 370 TEVSGATPLRMPPGEVSRRLYAVEPEMVEPIPQQTVLPSSVRPESDEETPEHDTLIWQVH 429

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             YI++Q   GL+++DQ+AAHER+++E+  ++  S    SQ LL P+ ++    + ALI 
Sbjct: 430 DRYILTQIRSGLLLIDQNAAHERILYERALRNLESGFGLSQQLLFPQTLEFSPADFALIE 489

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E   +L  LG   E F    + +R +P  +   +   +L D++ +   +     L  R E
Sbjct: 490 ELMPELRALGFDLELFSGRTVVVRGVPDDIRPGDERTMLEDLLAQYKAN-LPLRLPSR-E 547

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N+  ++A   +IR G ++   +M  L+ ++           GRPT I+L L ++E+ FGR
Sbjct: 548 NLARSVARRNAIRPGTRLTEKQMRTLIDQLFLCETPYVSPTGRPTMIRLTLEELERRFGR 607


>gi|291524850|emb|CBK90437.1| DNA mismatch repair protein MutL [Eubacterium rectale DSM 17629]
          Length = 618

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 185/629 (29%), Positives = 302/629 (48%), Gaps = 48/629 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L+++ I++IAAGE++ERP   +KEL+EN++DA S+ +   I  GG SF +ITDN
Sbjct: 1   MPNIAILNQETIDKIAAGEVVERPCSVVKELVENAIDAGSTAITVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++ +A  RH TSKI   +D   + + GFRGEAL SI AV+ + L+++     T
Sbjct: 61  GCGIERDQVAVAFYRHSTSKIRSAEDLLTVKSLGFRGEALSSISAVARVELITKTYDELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S   +    GT   V+DLF+ +PAR  FLK+ Q E + I+D++ ++A+
Sbjct: 121 GTRYVIEGSKELSNEEIGAPDGTTFIVKDLFYNVPARRKFLKTAQTEGSYISDMVEKLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F      +      S NGN  + I  + G +  ++ +E+  +     ++G+ 
Sbjct: 181 SHPDISFKFINNNQTKLH---TSGNGNRKDIIYHIFGREISSSLLEVKHECEYFKVEGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    FINGR V+   +   I  AY   +   +YP  VL        +DV
Sbjct: 238 GKPVITRGNRNYENYFINGRYVKSNILSRAIEEAYKSFLMQHQYPFTVLYFTFFSE-LDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF N   I   +  +I   ++ K +     +            APK  + +
Sbjct: 297 NVHPTKMELRFDNNNEIYVELCDTIYAILSHKEMIPEVPVD--------STPAPKKIVHE 348

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI--------- 408
           Y   +    EK  + E R + +  +     T +  N    E  A   +            
Sbjct: 349 YKEPIPEPFEKRRINEVRAAESRSVYGQSVTSTVKNYSATEPAAKAPETSTAYEPAQVVT 408

Query: 409 -----------------------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                                     Q+ + Y + +  D L I+DQHAAHE++++EK   
Sbjct: 409 GTQQTLGDYDKVFLTESSKKQFSIIGQLFKTYWLIEFEDKLYIIDQHAAHEKVLYEKTMA 468

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
              +   TSQ +  P ++ L   EC ++ ++   + + G + E FG     I  IP  L 
Sbjct: 469 RLANKDFTSQRISPPIVMTLDARECEMLEKYRPQIEQFGYEVEHFGGKEYMISAIPDNLF 528

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             ++  L  +++D+  + +T     D I   +A+M+C  +++   K+   E+N+L+ E+ 
Sbjct: 529 NIDMKDLFIEMLDDFSN-ATGRQTPDIITEKVASMSCKAAVKGNDKLTLPEINKLIDELL 587

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              N   C HGRPT I +   +IEK F R
Sbjct: 588 SLDNPYNCPHGRPTIISMSKYEIEKKFKR 616


>gi|15614931|ref|NP_243234.1| DNA mismatch repair protein [Bacillus halodurans C-125]
 gi|20139217|sp|Q9KAC1|MUTL_BACHD RecName: Full=DNA mismatch repair protein mutL
 gi|10174988|dbj|BAB06087.1| DNA mismatch repair protein [Bacillus halodurans C-125]
          Length = 637

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 183/638 (28%), Positives = 312/638 (48%), Gaps = 50/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KL + + N+IAAGE++ERP+  +KEL+EN+LDA S ++   +  GG    ++ D+G 
Sbjct: 3   KIIKLDDHLSNKIAAGEVVERPASVVKELVENALDANSRKITIEVEAGGLDRIRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A  RH TSKI    D   I T GFRGEALPSI +VSH+ + +     + G 
Sbjct: 63  GIEREDVETAFFRHATSKIKTDKDLFQIATLGFRGEALPSIASVSHVQIKTST-GGDGGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I  +   AM  GT + V  LF+  PARL ++K+   E   I+DV+ R+A+A+
Sbjct: 122 EMVLEGGVIKKIGSTAMGKGTDLTVTQLFYNTPARLKYVKTVHTELGNISDVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF       N  +    S NG+  + I+ + G       V L+ ++ + T+ G+   
Sbjct: 182 PYVSFQLFHNGKNVLR---TSGNGDQLQVIAAIYGRTVAKQMVPLSGETIDFTVSGFAAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + +NGR +++  +   I+  +   +P+GRYP+ ++ +E+DP+ +DVNV
Sbjct: 239 PEVTRASRQYMSLLVNGRYIRNVALSKAIQQGFHTLLPIGRYPIAIVNIELDPQLIDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------LSKKMISSF 345
           HP+K  +R      +   + ++I++A  K+ +   +                     S+ 
Sbjct: 299 HPSKLEVRVSKEEELCRLVTETIERAFKKEQLIPEATKPTGGKQKSEQLSFTLDDFTSAK 358

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS--------------- 390
             ++   T   +     ++  + +  QE R  +NDL   +    +               
Sbjct: 359 PSEDRGSTSSNEENEQRSSIDKNVLFQEERKLSNDLPSINMVREASASVEPALEKEPPAA 418

Query: 391 ----------EDNDPVEESE----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                     E     EE+     A          Q+H  YI++Q   GL I+DQHAA E
Sbjct: 419 ELTAGAKGAMEQASMEEETSNSLPANRVPTMYPIGQMHGTYILAQNDQGLYIIDQHAAQE 478

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q L+ P  ++    E A I EH EDL ++G+  E FGP    
Sbjct: 479 RMKYEYFREKVGEVTNELQELIVPITVECTLQEAAYIEEHLEDLKQVGLFFEEFGPQTFM 538

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           IR+ P    K    + +R++ID++++      ++   E +   M+C  +I++ R ++  E
Sbjct: 539 IRQHPTWFPKGLEEETIREMIDQLMEKRKVD-IKKLREEVAILMSCKAAIKANRHLRHDE 597

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M  LL  + K+ +   C HGRP  +++   ++EK+F R
Sbjct: 598 MYALLEALRKSSDPFTCPHGRPIIVQITTYEMEKMFKR 635


>gi|260554622|ref|ZP_05826843.1| DNA mismatch repair ATPase [Acinetobacter baumannii ATCC 19606]
 gi|260411164|gb|EEX04461.1| DNA mismatch repair ATPase [Acinetobacter baumannii ATCC 19606]
          Length = 650

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/639 (32%), Positives = 342/639 (53%), Gaps = 46/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------------- 335
           NVHP K  IRF N   +  F+    ++ + +   +++                       
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDIQNLSVQPQPKYQ 369

Query: 336 ---VLSKKMISSFHQDNAPKTHLPKYA--TSLTNTQEKLFLQENRLSTND---------- 380
               L +   ++    + P  + P     T   N++ +      +    +          
Sbjct: 370 EQFTLHRTAQAADTAVDKPNGYQPSTELLTDFNNSRPQAVHYAEQTPKYNGSAQLNNALK 429

Query: 381 ----LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                L      +S D +    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHE
Sbjct: 430 TYLAPLRDQPANFSVDENIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHE 489

Query: 437 RLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           R++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   +
Sbjct: 490 RILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQV 549

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   
Sbjct: 550 IVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLS 609

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 EMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 648


>gi|154246983|ref|YP_001417941.1| DNA mismatch repair protein [Xanthobacter autotrophicus Py2]
 gi|154161068|gb|ABS68284.1| DNA mismatch repair protein MutL [Xanthobacter autotrophicus Py2]
          Length = 643

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/618 (38%), Positives = 367/618 (59%), Gaps = 24/618 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L   +I++IAAGE++ERP+  +KEL+EN+LDA +  +E VI GGG+   +++D+G
Sbjct: 25  MLIRRLPPVLIDRIAAGEVVERPAAVVKELVENALDAGARAIEVVIQGGGRRLVRVSDDG 84

Query: 61  FGMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM  +++ + V+RH TSK++ +D  +I T GFRGEALPSIG+V+HL + SRP       
Sbjct: 85  SGMGPDDLALCVERHATSKLAGEDLLSISTLGFRGEALPSIGSVAHLAIASRPRDAAHAF 144

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  ++  RP A+  GT VEVRDLF+  PARL FLKS++ E     DV+RR+A+A 
Sbjct: 145 EVRVDGGVVTPPRPAALGGGTRVEVRDLFYATPARLKFLKSDRAEGAAAADVVRRLALAR 204

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V+FT  T +        ++ + +    R++ V+G +   N V +N   +++ L+G  G
Sbjct: 205 PDVAFTLVTDERAAVTFPARADDADGRAARLADVLGAEAGRNVVAVNGIRDDVVLEGLAG 264

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF++ N+   Y+F+NGR V+DK ++  +R AYA+ +P  RYPV+ L + +DPR VDVN
Sbjct: 265 LPTFSKANSLSQYLFVNGRPVRDKLLMGAVRAAYADLLPSDRYPVLALFISLDPRDVDVN 324

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK+ +RFR+   +R  I++++  A+  +  ST+  ++ ++++               
Sbjct: 325 VHPAKTEVRFRDGGNVRALIVRTLSDALGARIPSTAGTMADRLVALARTPELGPRAAFAP 384

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT---------------- 402
           A          F         D      P     +   EE +A                 
Sbjct: 385 AAPFATPGGGAFAGFRPAPALDYDWRQSPARPMPSGLGEEEQARLDIAEPSADARADAAP 444

Query: 403 ------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                    LG A AQ+H+ YI++QT +GLV+VDQHAAHERL++EK++       +  Q 
Sbjct: 445 VSAVDLDRPLGAARAQLHETYIVAQTREGLVLVDQHAAHERLVYEKLKAALARDGVGRQG 504

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P ++DL   +   + E   DL  LG+  E FGP A+ +RE+PA+L   ++ +L+ D+
Sbjct: 505 LLIPAVVDLDPADADRLTERAGDLAALGLVLESFGPGAVLVREVPALLKDADVTRLVTDL 564

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
            +   +      L+ R+ ++ ATMAC+GS+R+GR+++  EMN LLREME+ PN+ +CNHG
Sbjct: 565 AEHAAEWDDALPLERRLLHVAATMACHGSVRAGRRLKVEEMNALLREMEETPNAGECNHG 624

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPTF+ L L D+EKLF R
Sbjct: 625 RPTFVTLSLKDVEKLFAR 642


>gi|184158632|ref|YP_001846971.1| DNA mismatch repair ATPase [Acinetobacter baumannii ACICU]
 gi|332874328|ref|ZP_08442240.1| DNA mismatch repair protein [Acinetobacter baumannii 6014059]
 gi|183210226|gb|ACC57624.1| DNA mismatch repair enzyme (predicted ATPase) [Acinetobacter
           baumannii ACICU]
 gi|322507604|gb|ADX03058.1| mutL [Acinetobacter baumannii 1656-2]
 gi|323518550|gb|ADX92931.1| DNA mismatch repair ATPase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737456|gb|EGJ68371.1| DNA mismatch repair protein [Acinetobacter baumannii 6014059]
          Length = 650

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/639 (32%), Positives = 341/639 (53%), Gaps = 46/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------------- 335
           NVHP K  IRF N   +  F+    ++ + +   +++                       
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDTQNLSVQPQPKYQ 369

Query: 336 ---VLSKKMISSFHQDNAPKTHLPKYA--TSLTNTQEKLFLQENRLSTND---------- 380
               L +   ++    + P  + P     T   N++ +      +    +          
Sbjct: 370 EQFTLHRTAQAADTAVDKPNGYQPSTELLTDFNNSRPQSVHYAEQTPKYNGSAQLNNALK 429

Query: 381 ----LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                L      +S D      ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHE
Sbjct: 430 TYLAPLRDQPANFSVDESIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHE 489

Query: 437 RLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           R++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   +
Sbjct: 490 RILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQV 549

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   
Sbjct: 550 IVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLS 609

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 EMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 648


>gi|169633284|ref|YP_001707020.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter
           baumannii SDF]
 gi|169152076|emb|CAP00963.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter
           baumannii]
          Length = 650

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 207/639 (32%), Positives = 340/639 (53%), Gaps = 46/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------------- 335
           NVHP K  IRF N   +  F+    ++ + +   +++                       
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDTQNLSVQPQPKYQ 369

Query: 336 ---VLSKKMISSFHQDNAPKTHLPKYA--TSLTNTQEKLFLQENRLSTND---------- 380
               L +   ++    + P  + P     T   N++ +      +    +          
Sbjct: 370 EQFTLHRTAQAADTAVDKPNGYQPSTELLTDFNNSRPQSVHYAEQTPKYNGSAQLNNALK 429

Query: 381 ----LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                L      +S D       +   + LGIA AQ+H  YI++Q T+GL+IVD HAAHE
Sbjct: 430 TYLAPLRDQPANFSVDESIEPVPKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHE 489

Query: 437 RLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           R++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   +
Sbjct: 490 RILLKQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKPQLERLGLEIDLYGDEQV 549

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   
Sbjct: 550 IVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLS 609

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 EMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 648


>gi|295399905|ref|ZP_06809886.1| DNA mismatch repair protein MutL [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111576|ref|YP_003989892.1| DNA mismatch repair protein MutL [Geobacillus sp. Y4.1MC1]
 gi|294978308|gb|EFG53905.1| DNA mismatch repair protein MutL [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216677|gb|ADP75281.1| DNA mismatch repair protein MutL [Geobacillus sp. Y4.1MC1]
          Length = 619

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 182/620 (29%), Positives = 297/620 (47%), Gaps = 32/620 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  +   G    ++ DNG 
Sbjct: 3   KIRKLDDQLSNKIAAGEVVERPASVVKELVENAIDANSTIIEIELEEAGLMKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSKI D  D   I T GFRGEALPSI +VS + + +       G 
Sbjct: 63  GMEEDDCLIAFERHATSKIKDEHDLFRIRTLGFRGEALPSIASVSEVEMKTGTGDGP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+   G K+          GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 QVVFKGGKLVKRERTTSRKGTDITVSNLFFNTPARLKYMKTIHTELGHITDVVNRLAMAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          ++ + S NG+  + ++ + G D     V +  +S + T+ G+  +
Sbjct: 182 PDISFRLRHHGK---QLLYTSGNGDVRQVLAAIYGMDVAKKMVPIQAESLDFTVHGFISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I   Y   +P+GRYP+V L + +DP  VDVNV
Sbjct: 239 PEVTRASRNYISTIVNGRYVRNIPLMKAIEAGYHTLLPIGRYPIVFLSVAMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------- 350
           HPAK  +RF     + + + +++++A+  + +     +  K       + A         
Sbjct: 299 HPAKLEVRFSKEAELNDLVTKAVRQALQAQTLIPEVTIKPKETPKPKAEQATWTFEHVVK 358

Query: 351 ------------PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                       PK             +E L L     +  +    +    S   +  E+
Sbjct: 359 EPMVSPLVRVEEPKPSSRMEEAKEEANEESLPLSPPAEAPQNSAADERERMSGQTESAEQ 418

Query: 399 SEATHYQ----LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
            +               Q+H  YI++Q   GL I+DQHAA ER+ +E  R+         
Sbjct: 419 EQVCVNNDRLPPLYPIGQMHGTYILAQNERGLYIIDQHAAQERIKYEYFREKVGEVTNEV 478

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P        E  LI  H E+L + G+  E FG N   +R  P+   K    +++ 
Sbjct: 479 QELLVPLTFHYPADEYVLIDAHREELAKCGVFLEPFGHNTFIVRSHPSWFPKGEEAEIIE 538

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++I ++I+      ++   E     M+C  SI++   ++  E+  LL  + K  +   C 
Sbjct: 539 EMIQQVIEMKKVD-IKQLREKAAILMSCKRSIKANEYLRDDEIFALLESLRKTTDPFTCP 597

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP  I     ++EK+F R
Sbjct: 598 HGRPIIIHFSTYELEKMFKR 617


>gi|239946682|ref|ZP_04698435.1| DNA mismatch repair protein MutL [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920958|gb|EER20982.1| DNA mismatch repair protein MutL [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 610

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/610 (40%), Positives = 370/610 (60%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDAGSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+ + DF NIHTFGFRGEALPSI  +S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKLDESDFLNIHTFGFRGEALPSIATISKMLITSKKQGADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E     DV++++ +A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVDVVKKITLAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDGKNLLKLKRQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L++DP+ VDV
Sbjct: 241 SIPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPLCAIFLQVDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F      K     
Sbjct: 301 NVHPAKVEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIATDALELFKNPLVNKQPQIS 360

Query: 358 YA----TSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDNDPVEESEATHYQL 406
            A    +   + +       N++  N       D LP        +N    E +      
Sbjct: 361 KAINVNSKSADYRPTTHSTLNKVPQNHVCQKLIDTLPHAKIEQEVENRIEHEQQTRKQYK 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A  Q+H  YIISQT D +VI DQH AHERL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKTQLHTTYIISQTEDSIVITDQHVAHERLGYEKIKDYLKTEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E +   + EH E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D  
Sbjct: 481 PNEKKADCLYEHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+G+K+   EMN LLR+ME  P S QCNHGRPT+I+LK
Sbjct: 541 ENIALTELIEHVTETYACHYSIRAGQKLSVDEMNALLRQMENTPFSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|222110664|ref|YP_002552928.1| DNA mismatch repair protein Mutl [Acidovorax ebreus TPSY]
 gi|221730108|gb|ACM32928.1| DNA mismatch repair protein MutL [Acidovorax ebreus TPSY]
          Length = 635

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 198/617 (32%), Positives = 320/617 (51%), Gaps = 27/617 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LD+ ++ +   +  GG     + D+G 
Sbjct: 20  PIRDLPDELISQIAAGEVVERPASVVRELVDNALDSGATAITVRLLAGGVRLISVEDDGC 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKI++  D   + T GFRGEAL +I +VS   L+SRP    +  
Sbjct: 80  GIPQDELPVALRRHATSKITNLHDLETVATMGFRGEALAAIASVSETALLSRPQAQASAF 139

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +I          GT VEV++LFF+ PAR  FLKS+  E     + +RR A+A 
Sbjct: 140 LLDARSGEIRPAARSH---GTTVEVKELFFSTPARRKFLKSDATELAHCVEAVRRHALAR 196

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN------FPERISQVIGEDFINNAVELNEKSNEITL 233
           P V F          +       G          R++ V+GEDF+  +V +  ++  +T+
Sbjct: 197 PDVGFAIWHEGKLLEQWRATFVPGAGQAQDALARRLADVLGEDFVAQSVAVLHRAGPVTV 256

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G  G+P   R  A+  Y ++NGR V+DK +    R+AY + +   + PV  L +EIDP 
Sbjct: 257 TGRAGLPDAARARADHQYCYVNGRFVRDKVLTHAARSAYEDVLHGQKQPVYALYVEIDPA 316

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQDNAP 351
           +VDVNVHP K  +RFR+   +   +  +++ A+     +    S ++   +     D  P
Sbjct: 317 RVDVNVHPTKIEVRFRDSREVHQAVRHAVENALAAPRAAALAPSFVAASALPESDSDRKP 376

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL----- 406
                + A +    +E+   + + L             +     V E     +       
Sbjct: 377 SEPFTRKAQAAIKFEERPGHKVSDLQALWQPTPSAAPTATPAQGVAEPPPRDWATPAPPA 436

Query: 407 --------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTL 457
                   G A AQIH  YI+++   G+V+VD HAAHER+++E+++   +S  +I SQ L
Sbjct: 437 AEEPAWPLGRAVAQIHGVYILAENAQGMVVVDMHAAHERIVYERLKAQVDSGARIASQPL 496

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P        E A   E  E L  LG++   F P  +A+R +P  L++ +  +L R ++
Sbjct: 497 LIPATFAATAQEVATAEECAEVLATLGLEVVPFSPKTLAVRAVPTSLAQGDAVELARSVL 556

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            E+     T  +Q     ILATMAC+G++R+ RK+   EMN LLR+M     S QCNHGR
Sbjct: 557 AELAAHDATTVVQRARNEILATMACHGAVRANRKLTLDEMNALLRQMGTTDRSDQCNHGR 616

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT+ +L + +++ LF R
Sbjct: 617 PTWRQLTMKELDALFLR 633


>gi|212639350|ref|YP_002315870.1| DNA mismatch repair protein [Anoxybacillus flavithermus WK1]
 gi|226723025|sp|B7GIA3|MUTL_ANOFW RecName: Full=DNA mismatch repair protein mutL
 gi|212560830|gb|ACJ33885.1| DNA mismatch repair enzyme (predicted ATPase) [Anoxybacillus
           flavithermus WK1]
          Length = 608

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 177/609 (29%), Positives = 305/609 (50%), Gaps = 21/609 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL + + N+IAAGE++ERP+  +KEL+EN++DA S+ +E  +   G +  ++ DNG 
Sbjct: 3   KIRKLDDALANKIAAGEVVERPASVVKELVENAIDAHSTIIEVELEEAGLAKIRVVDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G   E+  +A +RH TSKI D  D   I T GFRGEALPSI +VSHL L +       G 
Sbjct: 63  GFEEEDCFLAFERHATSKIKDEADLFRIRTLGFRGEALPSIASVSHLELKTST-GEGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G ++      +   GT + V  LFF  PARL ++K+   E   + DVI R+A+A+
Sbjct: 122 WLVLKGGELVQHGRTSSRKGTDITVSHLFFNTPARLKYMKTIHTELGHVVDVINRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF  +       ++ + + NG+  + ++ + G D     + ++ ++ + T+ GY  +
Sbjct: 182 PHISFRLTHNGK---QLFYTNGNGDVRQVLAAIYGLDVAKKMIAIHAETLDFTIDGYVAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  +   I   Y   +P+GR+P+  L + +DP  +DVNV
Sbjct: 239 PEVTRASRNYMTTIVNGRYIKNYSLYKAIEEGYHTLLPIGRHPITFLNIMMDPLLIDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RF   T +   + Q+I+++  KK +       +   +   Q      H+ K +
Sbjct: 299 HPAKLEVRFSKETELNELVQQTIRQSFQKKTLIPEVTAPRVEKTKAEQQTFSFEHIVKES 358

Query: 360 TSLTN------------TQEKLFLQENRLS--TNDLLPSDDPTYSEDNDPVEESEATHYQ 405
            +++             T+E++ L+++       D+   D  +         E +     
Sbjct: 359 NTMSPRVTEIHRDQEKKTEERIVLEKSDEHVRDQDVTLLDVESVVPSEHVTGEMDQERIP 418

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                 Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+   +     Q LL P  +  
Sbjct: 419 PLYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKLATVTNELQPLLIPLTLTY 478

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E  LI  + + L   G+  E FG N+  +R  P    K     ++ ++I ++++   
Sbjct: 479 SSSEYLLIESYRDQLAACGVFLEPFGHNSFIVRSHPQWFPKGEEVAIIEEMIKQVLEMKK 538

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              ++   E     M+C  SI++ + +++ E+  LL  + K  +   C HGRP  I    
Sbjct: 539 VD-MKQLREKAAIMMSCKQSIKANQFLRNDEIFALLESLRKTSDPFTCPHGRPIIIHFST 597

Query: 586 SDIEKLFGR 594
            ++EK+F R
Sbjct: 598 YELEKMFKR 606


>gi|332867099|ref|ZP_08437396.1| DNA mismatch repair protein [Acinetobacter baumannii 6013113]
 gi|332734292|gb|EGJ65421.1| DNA mismatch repair protein [Acinetobacter baumannii 6013113]
          Length = 650

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/639 (32%), Positives = 343/639 (53%), Gaps = 46/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIKEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS----KKMISSFHQDNAP-- 351
           NVHP K  IRF N   +  F+    ++ + +   +++ +          +SF Q      
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKADDTQASFVQSQPKYQ 369

Query: 352 -----------------KTHLPKYATSL-----TNTQEKLFLQENRLSTN---------- 379
                            K+   + +T L      +  + +   E     N          
Sbjct: 370 EQFTLHRTDQAVDTTLDKSSSYQPSTELLTDFNNSRPQAVHYAEQTPKYNGSAQLNNALK 429

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                L      +S D +    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHE
Sbjct: 430 TYLAPLRDQPTNFSVDENIESVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHE 489

Query: 437 RLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           R++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   +
Sbjct: 490 RILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAIRVEDLKPQLERLGLEIDLYGDEQV 549

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   
Sbjct: 550 IVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLS 609

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 EMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 648


>gi|254670262|emb|CBA05521.1| DNA mismatch repair protein MutL [Neisseria meningitidis alpha153]
          Length = 658

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/658 (31%), Positives = 339/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  + GGG     ++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELDGGGIRLIHVSDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   ++   
Sbjct: 63  GIHPDDIELALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQEDSSHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS        GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAATHPVGTTIEAAELFFNTPARRKFLKSENTEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  S  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGSGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP K+ IRFR+   +   +  ++ KA+                                 
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRANLTESVGNAGEVLHDITGVVSTPMPSEN 358

Query: 329 -----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                    ++     K  +     ++ KT    Y ++    Q  L L+E+R + N    
Sbjct: 359 DSENLFDSVSNYPTGNKSDTHNAFGSSGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATHYQL---------------GIACAQIHQNY 417
               T            +   +   E+ A                    G A AQ+   Y
Sbjct: 419 LYKKTDDIDLELSRFEQARFGNMPSETPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++    I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRTVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|169795562|ref|YP_001713355.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter
           baumannii AYE]
 gi|213158497|ref|YP_002319795.1| DNA mismatch repair protein MutL [Acinetobacter baumannii AB0057]
 gi|215483049|ref|YP_002325254.1| DNA mismatch repair protein MutL family protein [Acinetobacter
           baumannii AB307-0294]
 gi|301347865|ref|ZP_07228606.1| DNA mismatch repair protein MutL family protein [Acinetobacter
           baumannii AB056]
 gi|301510580|ref|ZP_07235817.1| DNA mismatch repair protein MutL family protein [Acinetobacter
           baumannii AB058]
 gi|301596368|ref|ZP_07241376.1| DNA mismatch repair protein MutL family protein [Acinetobacter
           baumannii AB059]
 gi|332850620|ref|ZP_08432867.1| DNA mismatch repair protein [Acinetobacter baumannii 6013150]
 gi|169148489|emb|CAM86355.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter
           baumannii AYE]
 gi|213057657|gb|ACJ42559.1| DNA mismatch repair protein MutL [Acinetobacter baumannii AB0057]
 gi|213988182|gb|ACJ58481.1| DNA mismatch repair protein MutL family protein [Acinetobacter
           baumannii AB307-0294]
 gi|332730457|gb|EGJ61773.1| DNA mismatch repair protein [Acinetobacter baumannii 6013150]
          Length = 650

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/639 (32%), Positives = 343/639 (53%), Gaps = 46/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS----KKMISSFHQDNAP-- 351
           NVHP K  IRF N   +  F+    ++ + +   +++ +          +SF Q      
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKADDTQASFVQSQPKYQ 369

Query: 352 -----------------KTHLPKYATSL-----TNTQEKLFLQENRLSTN---------- 379
                            K+   + +T L      +  + +   E     N          
Sbjct: 370 EQFTLHRTDQAVDTTLDKSSSYQPSTELLTDFNNSRPQAVHYAEQTPKYNGSAQLNNALK 429

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                L      +S D +    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHE
Sbjct: 430 TYLAPLRDQPTNFSVDENIESVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHE 489

Query: 437 RLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           R++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   +
Sbjct: 490 RILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAIRVEDLKPQLERLGLEIDLYGDEQV 549

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   
Sbjct: 550 IVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLS 609

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 EMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 648


>gi|103487111|ref|YP_616672.1| DNA mismatch repair protein [Sphingopyxis alaskensis RB2256]
 gi|123078316|sp|Q1GSN3|MUTL_SPHAL RecName: Full=DNA mismatch repair protein mutL
 gi|98977188|gb|ABF53339.1| DNA mismatch repair protein MutL [Sphingopyxis alaskensis RB2256]
          Length = 603

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 228/606 (37%), Positives = 354/606 (58%), Gaps = 16/606 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E ++N+IAAGE++ERP+ A+KEL+EN++DA ++R+   IA GG +  ++ D+G
Sbjct: 1   MSIRRLPETLVNRIAAGEVVERPAAALKELVENAIDAGATRIAVRIAEGGIARLEVEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT+ ++ +A++RH TSK+ DD    + T GFRGEALPSI +V+ LTL SR    + G 
Sbjct: 61  CGMTAADMVLALERHATSKLPDDAIEAVTTLGFRGEALPSIASVARLTLESRTAGGD-GW 119

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  +    + +  P A+  GT V V  LF  +PAR  FL+S + E     DV+RR+A+A 
Sbjct: 120 RRVVDNGAVVAEGPAALGQGTRVIVEHLFARVPARRKFLRSARSEYAACLDVVRRLAMAR 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT          +       +   R++ +   D   N++ ++    E+ L G   +
Sbjct: 180 PDVGFTLEHDGRRVLDVQ---GGQDRVGRVAALTSRDLAANSIGVDLDRGEVHLGGVISL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+NRG A+  Y+F+NGR V+D+ ++  +R AYA+ +   R+PVV L L++   +VDVNV
Sbjct: 237 PTYNRGIADHQYLFVNGRPVKDRLLVGALRGAYADLLARDRHPVVALFLDVPTGEVDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKTHLPKY 358
           HPAK+ +RFR+P +IR  I+  +++A+++ G  +    ++  ++++ Q+  AP       
Sbjct: 297 HPAKTEVRFRDPQLIRGMIVGGLRRALDEHGFRSVQKPAEAALAAWQQEPVAPPPATGFL 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDP----------TYSEDNDPVEESEATHYQLGI 408
                      F  E  L   D+    D               +        A  + LGI
Sbjct: 357 FDRRAGAAVHPFAAEVSLPAADVARVYDRLMPFTAPAPLAGRAEVAATPPPAAEAHPLGI 416

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A  QI + YI+++  DGLVIVDQHAAHERL+ E +++      + SQ LL PE+++L E 
Sbjct: 417 ARGQIAKTYIVAEAEDGLVIVDQHAAHERLVLETLKRGMAGQAVPSQGLLIPEVVELDEP 476

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
            C  +    + L  LG++ ERFGP A+ +R  PA+L   +  +L+ DI D++        
Sbjct: 477 ACDRLEAAADGLAALGVELERFGPGAVMVRATPAMLGAIDCHRLVTDIADDLAGYDAALG 536

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           L +R+E + ATMAC+GS+R+GR +   EMN LLR+ME  P+S QCNHGRPT++KL + D+
Sbjct: 537 LNERLELVAATMACHGSVRAGRTLSVAEMNALLRQMEVTPHSGQCNHGRPTWVKLAMGDV 596

Query: 589 EKLFGR 594
           E+LFGR
Sbjct: 597 ERLFGR 602


>gi|260549350|ref|ZP_05823569.1| DNA mismatch repair ATPase [Acinetobacter sp. RUH2624]
 gi|260407459|gb|EEX00933.1| DNA mismatch repair ATPase [Acinetobacter sp. RUH2624]
          Length = 651

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 209/640 (32%), Positives = 343/640 (53%), Gaps = 47/640 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGQQFVQNAYWIDAESINMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------VLSK 339
           NVHP K  IRF N   +  F+    ++ + +   +++                      +
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKVDDTQNLSVQPQPKYQ 369

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQ----------EKLFLQENRLSTNDLLP------ 383
           +  +    + A  T L K  +S  +T+          + +   E     N          
Sbjct: 370 EQFTLHRTEQAVDTTLDKPNSSQPSTELLTDFNNSRPQAVHYAEQTPKYNGSAQLNNALK 429

Query: 384 --------SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                        +S D +    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAH
Sbjct: 430 TYLAPLRDQPATNFSVDENVEPVAKIDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAH 489

Query: 436 ERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
           ER++ ++M+  ++  +  TSQ LL P++I +   +   + +    L RLG++ + +G   
Sbjct: 490 ERILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEDLKSQLERLGLEIDLYGDEQ 549

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
           + +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++  
Sbjct: 550 VIVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSL 609

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 SEMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 649


>gi|167626478|ref|YP_001676978.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596479|gb|ABZ86477.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 601

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 200/596 (33%), Positives = 325/596 (54%), Gaps = 8/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + NQIAAGE+IERPS  +KELIENS+DA ++ +   I  GGKS  +I DNG 
Sbjct: 9   QIRLLPEDLANQIAAGEVIERPSSVVKELIENSIDAGATAITIEIQEGGKSLIRIRDNGK 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   ++  ++ + GFRGEAL SI +VS L ++S+    +   
Sbjct: 69  GIVYDDLRLALAPHATSKVYTLEELESVASMGFRGEALASIASVSKLKIISKHQDYDDAW 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P A   GT +EV +LF+  PAR  FLK +  E   I+D++++  + Y
Sbjct: 129 QINNETREV---TPAAHVTGTTIEVSELFYNTPARRKFLKKDNTEFLHISDLLKKYMLCY 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   DFI NA+ ++++  +  L G+   
Sbjct: 186 FGIAFRLIHNGKEVKDLLLAEDAQLKYNRVLDLYSRDFIENAIYIDKEVGDAHLWGWVAS 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L++D ++VDVNV
Sbjct: 246 PRFNRARADMQSFYINGRIIKDKIVTHAIKNAYKDVMYGNRYPAFLLYLDMDYKEVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  ++ KAI         + S    +++ +       L    
Sbjct: 306 HPAKSEVRFRNQKFIYDFLFGTVNKAITTSADIEIEISSFSENNTYQESKGTNNPLNIGN 365

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            SL  + E    + +  S  D   S+  T  ++N+     +     LG A  QIH  YI+
Sbjct: 366 MSLDISIEDEKDESSNTSLLDKYFSNQTT--QENEIHISQKTKSSGLGQAICQIHGIYIL 423

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A I E+ E
Sbjct: 424 SQVEDGIVLVDMHAAHERILYEEMKKTWHADTAKFKQNLLMPLTCRLSSNIVATIDENLE 483

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +A+ +R  P  +  K++  L+ ++  E+  S  T +++  + +ILA
Sbjct: 484 VFEKLGFEISVVADDAVLVRSTPIYVKDKDVQNLISNVATELTSSGKTKSVEFYLNHILA 543

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 544 TVSCHAAVRANDKLGIPEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDNFFLR 599


>gi|241668914|ref|ZP_04756492.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877446|ref|ZP_05250156.1| DNA mismatch repair protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843467|gb|EET21881.1| DNA mismatch repair protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 601

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 198/596 (33%), Positives = 323/596 (54%), Gaps = 8/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + NQIAAGE+IERPS  +KELIENS+DA ++ +   I  GGKS  +I DNG 
Sbjct: 9   QIRLLPEDLANQIAAGEVIERPSSVVKELIENSIDAGATAITIEIQEGGKSLIRIRDNGK 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   ++  ++ + GFRGEAL SI +VS L ++S+    +   
Sbjct: 69  GIVYDDLRLALAPHATSKVYTLEELESVASMGFRGEALASIASVSKLKIISKHQDYDDAW 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     +++    V    GT +EV +LF+  PAR  FLK +  E   I+D++++  + Y
Sbjct: 129 QINNETREVTPAAHV---TGTTIEVSELFYNTPARRKFLKKDNTEFLHISDLLKKYMLCY 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   DFI NA+ ++++  +  L G+   
Sbjct: 186 FSIAFRLIHNGKEVKDLLSAEDAQLKYNRVLDLYSRDFIENAIYIDKEVGDAHLWGWVAS 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L++D ++VDVNV
Sbjct: 246 PRFNRARADMQSFYINGRIIKDKIVTHAIKNAYKDVMYGNRYPAFLLYLDMDYKEVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  ++ KAI           S    + + +       L    
Sbjct: 306 HPAKSEVRFRNQKFIYDFLFGTVNKAITTSADIEIETSSYSESNIYQESKGTNNPLNIGN 365

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            SL  + E    + +  S  D   S+    +++N+     +     LG A  QIH  YI+
Sbjct: 366 MSLDISIEDEKDESSSTSLLDKYFSNQT--NQENEIHISQKPKASGLGQAICQIHGIYIL 423

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A I E+ E
Sbjct: 424 SQVEDGVVLVDMHAAHERILYEEMKKTWHADAAKFKQNLLMPLTCRLSSNIVATIDENLE 483

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +A+ +R  P  +  K++  L+ ++  E+  S  T +++  + +ILA
Sbjct: 484 VFEKLGFEISVVADDAVLVRSTPIYVKDKDVQNLISNVATELTSSGKTKSVEFYLNHILA 543

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 544 TVSCHAAVRANDKLNIQEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDNFFLR 599


>gi|325142632|gb|EGC65023.1| DNA mismatch repair protein MutL [Neisseria meningitidis 961-5945]
          Length = 658

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 214/658 (32%), Positives = 342/658 (51%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + ++NQIAAGE++ERP+ A+KE++ENS+DA ++ ++  +AGGG    +++DNG 
Sbjct: 3   RIAALPDHLVNQIAAGEVVERPANALKEIVENSIDAGATAIDVELAGGGIRLIRVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A+ RH TSKI   +D  ++ + GFRGE L SI +VS LTL SR   +    
Sbjct: 63  GIHPDDIKLALHRHATSKIKTLNDLEHVASMGFRGEGLASIASVSRLTLTSRQDGSAHAT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     K+SS    A   GT +E  +LFF  PAR  FLKSE  E      ++ R+A+A+
Sbjct: 123 QVKAEDGKLSSPTAAAHPVGTTIEAAELFFNTPARRKFLKSEATEYAHCATMLERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+        +K+  QS      ERI+ ++G+DF   ++E++  +  + L G    
Sbjct: 183 PHIAFSLKRDGKQVFKLPAQS----LHERIAAIVGDDFQTASLEIDSGNGALRLYGAIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G  ++ Y F+N R V+DK +L  ++ AY + +     P  VL L++ P  VDVNV
Sbjct: 239 PTFAKGKTDKQYCFVNHRFVRDKVMLHAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------ISTSSVLSKKMISSF 345
           HP K+ IRFR+   +   +  ++ KA+                     + V    M S  
Sbjct: 299 HPTKTEIRFRDSQQVHQLVFHTLNKALADTRADLTESVGNAGEVLHDITGVTPAPMPSEN 358

Query: 346 HQDN----------------------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
           + +N                      + KT    Y  +    Q  L L+E+R + N    
Sbjct: 359 NSENLFDRASNYPTGNKPDTRNAFGASGKTAPMPYQAARAPQQRSLSLRESRAAMNTYAE 418

Query: 384 SDDPT-----------YSEDNDPVEESEATH---------------YQLGIACAQIHQNY 417
               T            +   +   E+                     LG A AQ+   Y
Sbjct: 419 LYKKTDDIDLELNRLEQARFGNMPSETPTPKTDAPLSDGIPSQSELPPLGFAIAQLLGIY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEH 476
           I++Q  D L+++D HAA ER+ +EKM++       + SQ LL P        ECA + +H
Sbjct: 479 ILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGRLQSQRLLIPVTFAASHEECAALADH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L   G++    G N +A+R +PA+L K ++  L +D++ E+    ++ T+++    I
Sbjct: 539 ADALAGFGLELSDMGGNTLAVRTVPAMLGKADVVSLAKDVLGELAQVGSSQTIEEHENRI 598

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LATM+C+GS+R+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 599 LATMSCHGSVRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTLKELDALFLR 656


>gi|15893284|ref|NP_360998.1| DNA mismatch repair protein [Rickettsia conorii str. Malish 7]
 gi|20455107|sp|Q92FW6|MUTL_RICCN RecName: Full=DNA mismatch repair protein mutL
 gi|15620505|gb|AAL03899.1| DNA mismatch repair protein MutL [Rickettsia conorii str. Malish 7]
          Length = 610

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 247/610 (40%), Positives = 375/610 (61%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NI+TFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKFDESDFLNINTFGFRGEALPSIAAISKMLITSKKRDADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELTATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDGKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SSPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPICAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKT 353
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++  ++  F        +P +
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIASDVLELFKNPLVNKQSPVS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDNDPVEESEATHYQL 406
            +    +   + +       N +  N       D L         +N    E +      
Sbjct: 361 KVINVNSKSADYRPTTHSTLNTVPQNHVCQKLIDTLSHAKIEQEVENRIEHEQQTRKQYK 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  YIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D  
Sbjct: 481 PNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LK
Sbjct: 541 KNIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPLSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|294650010|ref|ZP_06727398.1| enzyme in methyl-directed mismatch repair [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824103|gb|EFF82918.1| enzyme in methyl-directed mismatch repair [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 657

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 209/648 (32%), Positives = 340/648 (52%), Gaps = 55/648 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   +A GG +  +I DNG 
Sbjct: 8   RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIIRVAQGGATLIEIIDNGN 67

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+AV RH TSKI  +DD   I + GFRGEAL SI AVS LTL S   +   G 
Sbjct: 68  GIHPEDLPLAVMRHATSKIQTADDLHAIVSLGFRGEALASIAAVSRLTLTSSQDEQGVGY 127

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        ++ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 128 QVEVNGTAFDHQQIQAVAAQKGTHIRVQDLFFNVPARRKFLKKPSTEFGHIEEIVRRLAL 187

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            + ++ F      + R  +    +     +R+ Q++G+ FI NA  ++ +S  + L G+ 
Sbjct: 188 THFEIRFVLEHNDNIRLNLPVADSGELRYQRVQQLLGQQFIQNAYWIDAESINMRLSGWL 247

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 248 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYEGILHGHQHSSYLLFLEVDPENIDV 307

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  IRF N   +  F+    +  +++   +++ +     +       A     PK
Sbjct: 308 NVHPTKHEIRFLNQREVHEFVRHYAKAMLSQFQTASADLAQAMKVDETDHQAAQYQPQPK 367

Query: 358 YATSL---------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-------- 394
           Y                   T+   +LF + N+     +  +   +     +        
Sbjct: 368 YQEQFNLHKAVVTEPLSDQQTDISTELFTEFNQSRPQAVHYTSGQSQQPRYNGSGQLNNA 427

Query: 395 ---------------------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
                                       V +S    + LGIA AQ+H  YI++Q T+GL+
Sbjct: 428 LKTYLAPLRESDVPTTAFDSGNDTVDRDVAQSRVDEFPLGIAIAQLHGIYILAQNTEGLI 487

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           IVD HAAHER++ ++M+  ++  +   SQ LL P+++ +   +   I E    L RLG++
Sbjct: 488 IVDMHAAHERILLQQMKAAWDKPEFWVSQQLLIPKVVPITRMQATRIEELQPQLQRLGLE 547

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            +++G   + +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++
Sbjct: 548 IDQYGDEQVIVRGVPAILHKADFSNLIPELLNDLDPNDEARGLLQKRDELLAGMACHGAV 607

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ R++   EMN LLR+ME+   +SQCNHGRPT+    L  ++KLF R
Sbjct: 608 RAHRQLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLHQLDKLFAR 655


>gi|163846708|ref|YP_001634752.1| DNA mismatch repair protein MutL [Chloroflexus aurantiacus J-10-fl]
 gi|222524517|ref|YP_002568988.1| DNA mismatch repair protein MutL [Chloroflexus sp. Y-400-fl]
 gi|163667997|gb|ABY34363.1| DNA mismatch repair protein MutL [Chloroflexus aurantiacus J-10-fl]
 gi|222448396|gb|ACM52662.1| DNA mismatch repair protein MutL [Chloroflexus sp. Y-400-fl]
          Length = 624

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 177/627 (28%), Positives = 311/627 (49%), Gaps = 38/627 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L E I  QIAAGE++ERP+  +KEL+EN++DA + R+   + GGG    ++ D+G
Sbjct: 1   MPIRLLDETIAAQIAAGEVVERPASVVKELLENAIDAGAQRIVIEVRGGGLREIRVQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++EI +A  RH TSK+  +DD   I T GFRGEALPSI +V+ +  +SR      G
Sbjct: 61  CGIPADEIELAFARHATSKLQSADDLWAIRTLGFRGEALPSIASVAQVICISRVADAELG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G ++ S  P     GT + VR+LF+  P R  +L+SE  ET  I+ ++++ A+A
Sbjct: 121 VELRIAGGEVQSRLPCGCPVGTTITVRNLFYNTPVRREYLRSEATETGAISAIVQQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----SNEITLQ 234
           YP+VSF+         +    S +G+    + ++ G +     + +  +       + + 
Sbjct: 181 YPEVSFSLLIDGRMALQ---TSGDGDLRTVVVELYGLEVGRALLPVQAEAGVDETWVAVN 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDK-FILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           G    P   R + N   +F N R +Q +  + + +  AY   +  GR+P+ +L + + P 
Sbjct: 238 GLISPPELTRSSRNYLSLFANRRALQPRGALAAVVENAYHTMLMKGRFPIAILDVRVHPA 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----- 348
            +DVNVHP KS ++FR    + + + ++I+ A+ +     +        +    +     
Sbjct: 298 AIDVNVHPTKSEVKFRYAAHVHSVLGRAIRDALLRGADIPTWDAPDPATAQRRFELRRLG 357

Query: 349 ---NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
                P +     A++    + +  +     + N  LP           P    E     
Sbjct: 358 QVATTPSSGWSVGASAWDRERSRWDVGSPATALNTPLPIVPEAPQSPPSPTLVPEPARQT 417

Query: 406 LGIAC------------------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            G                      Q+   YI+++  +G+ ++DQHAAHER+ +EK+   +
Sbjct: 418 PGEPITPAVPAAAPSALPPLRVVGQVGLTYIVAEAPEGMYLIDQHAAHERITYEKLMNQY 477

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               + SQ LL P+ +++     AL++ + E L   G   E +G   + +R IPA L   
Sbjct: 478 AQHAVESQQLLIPQAVEVSPEASALLLGNAERLAEWGFVLEPWGTG-VLVRAIPATLPTD 536

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
            + Q + +I +++     +  L+   E +L T+AC+ S+R+G+ +   EM +LLR++E+ 
Sbjct: 537 ELTQAIHEIAEKLAGRGGSDPLE-WREAMLITLACHTSVRAGQPLSHEEMRQLLRQLEQC 595

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   C HGRPT I +  + +E+ FGR
Sbjct: 596 VSPRTCPHGRPTMILMTPAQLERQFGR 622


>gi|210612718|ref|ZP_03289433.1| hypothetical protein CLONEX_01635 [Clostridium nexile DSM 1787]
 gi|210151411|gb|EEA82419.1| hypothetical protein CLONEX_01635 [Clostridium nexile DSM 1787]
          Length = 663

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 192/661 (29%), Positives = 313/661 (47%), Gaps = 72/661 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +  I++IAAGE+IERP+  IKEL+EN++DA +S V   I  GG SF +ITDNG G
Sbjct: 4   IQVLDQITIDKIAAGEVIERPASIIKELVENAIDAGASAVTVEIKEGGISFIRITDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EE+P+A  RH TSKI   DD + + + GFRGEAL SI A++ + L+++     TG +
Sbjct: 64  IPKEEVPLAFLRHSTSKIRSVDDLTTVASLGFRGEALSSIAAIAQVELITKTKDEVTGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G    ++       GT   V  +F+  PAR  FLK+   E + +++++ R+A+++P
Sbjct: 124 YRIEGGAEKAIEDTGAPDGTTFLVHQIFYNTPARRKFLKTPMTEASHVSELMTRLALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VS  F      +      S NG   + I  V G D  NN +E NE+ + I +QG+ G P
Sbjct: 184 EVSIQFINNGQEKLH---TSGNGKLKDIIYHVFGRDIANNLLETNERIDGIQVQGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +RGN N    FINGR V+   I   I  AY +     +YP   L   +D   +DVNVH
Sbjct: 241 IISRGNRNYENYFINGRYVKSNIIAKAIEDAYKDFTMQHKYPFTALHFTMDGTDLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL----------------------- 337
           P K  +RF N   + NFI  ++++ +++  +     L                       
Sbjct: 301 PTKMELRFSNQQGVYNFIYNALKQTLSEPELIPRVELPEAKEVPVKAEKIVERKQEQPMT 360

Query: 338 -----------------------SKKMISSFHQDNAPKTHLPKYATSLTNTQE------- 367
                                   ++ ++++HQ        P  +    N          
Sbjct: 361 PVREERKTPVIEEEKNLDYFMKKMRERVTAYHQQAVEVKPTPAPSVIQENVNYEALPASQ 420

Query: 368 ----KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY----------QLGIACAQI 413
               K  + E R    + +P       E+   V E +   +          Q      Q+
Sbjct: 421 VAAVKQPVPEQRTVAKEPMPEQAVAPREEKSVVTEKQLDFFEEKLLTKKAAQEYKIIGQL 480

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            + Y + +  + L I+DQHAAHER+++EK  +     + TSQ L  P I++L   E   +
Sbjct: 481 FETYWLVEFHEQLYIIDQHAAHERVLYEKTLRGMKDREFTSQYLSPPIILNLSMQEEEAL 540

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
             H +    +G + E FG ++ AIR +P  L      +L  +++D+++D   +    D +
Sbjct: 541 NTHMDIFTNIGFEIEPFGGDSYAIRAVPDNLFSIAKRELFTEMLDQLVDGIHSSLAPDIV 600

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
              +A+M+C  +++   ++ + E+  L+ E+ +  N   C HGRPT I +   ++EK F 
Sbjct: 601 AEKVASMSCKAAVKGNSRLSAAEVETLIGELLELENPYHCPHGRPTIIAMTKRELEKKFK 660

Query: 594 R 594
           R
Sbjct: 661 R 661


>gi|114569167|ref|YP_755847.1| DNA mismatch repair protein [Maricaulis maris MCS10]
 gi|114339629|gb|ABI64909.1| DNA mismatch repair protein MutL [Maricaulis maris MCS10]
          Length = 633

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/623 (38%), Positives = 370/623 (59%), Gaps = 31/623 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L  + +N+IAAGE++ERP+  +KEL EN+LDA + R++    GGG     I D+G G
Sbjct: 10  IRRLPPETVNRIAAGEVVERPASVVKELAENALDAGARRIDITAEGGGLVRLLIEDDGKG 69

Query: 63  MTSEEIPMAVQRHCTSKI------SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           M+  E+ + ++RH TSK+      +DD  NI T GFRGEALPSIG+++ L++ ++     
Sbjct: 70  MSPAELELCIERHATSKLPVGENGADDLLNISTMGFRGEALPSIGSIARLSITTQAKGKG 129

Query: 117 TGAQIAISGEKISSVRPVA--MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
               I + G K + + P A     GT +EVRDLF+  PARL FLKSE+ E   ITDV++R
Sbjct: 130 DAWAILVEGGKTNGIAPAAPLGRGGTRIEVRDLFYATPARLKFLKSERSENLGITDVVKR 189

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE--RISQVIGEDFINNAVELNEKSNEIT 232
           MA++ P V F  +     R  +  +   G      R+S ++G DF  NA+E+++    + 
Sbjct: 190 MAMSRPDVGFFLTLDGRKRLSVAAERGEGADARIARMSAILGADFGENALEVDQTREGVR 249

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G+  +PT++RGNA   Y+F+NGR V+DK +   +R AY + +   R+PVV L +E+  
Sbjct: 250 IFGFASLPTYSRGNAMHQYLFVNGRPVRDKLLGGAVRGAYQDFLARDRHPVVALNVELPT 309

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
            +VDVNVHPAK+ +RFR+  ++R  I+ S++ A+   G   S+ ++   +     +    
Sbjct: 310 DEVDVNVHPAKAEVRFRDAALVRGLIVGSLRHALAGAGHRASTTVAGYALGRVRPEGYQP 369

Query: 353 ---------------THLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSE 391
                                       Q+++F        E      D    + P    
Sbjct: 370 PQPPPGGYQSHTNSLAGWGAPRPPSEPVQDRVFDPGMSARVEPDQPAYDGGMGEMPQAGF 429

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
           D      +    + LG+A AQ+H+ Y+++QT DG+VIVDQHAAHERL++E+M++    T 
Sbjct: 430 DPAQQPSAPPLDWPLGVARAQLHETYVVAQTGDGIVIVDQHAAHERLVYERMKKMIAETG 489

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           +  Q LL PEI++L E E   ++E  E+L  LG+  E FG  AIA+RE P++L K NI  
Sbjct: 490 VQRQRLLVPEIVNLDEAEARRLLERGEELEELGLVIEAFGQGAIAVRETPSLLKKLNIQG 549

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L+RD+ D++ +     +L++++E+++ TMAC+GS+RSGR++   EMN LLREME  P+S 
Sbjct: 550 LIRDLADDLAEYDQALSLKEKLEDVVGTMACHGSVRSGRRLTGEEMNALLREMEATPHSG 609

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+++LKLSDIE+LFGR
Sbjct: 610 QCNHGRPTYVELKLSDIERLFGR 632


>gi|163855132|ref|YP_001629430.1| DNA mismatch repair protein [Bordetella petrii DSM 12804]
 gi|163258860|emb|CAP41159.1| DNA mismatch repair protein [Bordetella petrii]
          Length = 641

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 206/631 (32%), Positives = 336/631 (53%), Gaps = 46/631 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + +I+QIAAGE+IERP+  +KE++EN++DA +  +E  + GGG     ++D+G G
Sbjct: 16  IAALPDLLISQIAAGEVIERPASVLKEVLENAIDAGARAIEVRLEGGGIRRIAVSDDGVG 75

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EE+P+A+ RH TSKI    +  ++ + GFRGEAL SI +V+ +TL+SR        Q
Sbjct: 76  IPPEELPLALARHATSKIRSLGELESVASMGFRGEALASIASVAQVTLISRTRDGEHAWQ 135

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     ++    P +  PGT V+VR LF ++PAR  FL++E  E     D + R+A+A+P
Sbjct: 136 IDGGSLQV---TPASGPPGTTVDVRQLFDSVPARRKFLRAEATEFGHCVDALERIALAHP 192

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F        + +        +  +RI  V+G +F  + + +   +  I L G    P
Sbjct: 193 DIAFRLFHHDRAQRQWLP----ADPGQRIRDVLGAEFTEHGLPVEASAGAIGLSGMITRP 248

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T  R  A++ Y+++NGR V+D+ +   +R AYA+ +   R P  VL L+IDP  VDVNVH
Sbjct: 249 TAARARADRQYLYVNGRYVRDRTVSHALRAAYADVLHGDRQPAYVLYLDIDPGAVDVNVH 308

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-------------------------S 335
           PAK  +RFR+   +  F+ Q + +A+ + G +++                          
Sbjct: 309 PAKHEVRFRDSGAVHRFVSQVVGQALAQTGGASAVPAAAGMAPGAPAAASDTGAPALTVE 368

Query: 336 VLSKKMISSFHQDNAPKTHLPKY-ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                M+S+     A     P   A        +L  +   +   D      P  +    
Sbjct: 369 TTPAAMLSAGGGSAAAWPAAPDRTARPHAQVPFRLHTEPAGIPATDWRTLYRPLDNTAPA 428

Query: 395 PVEESEA-----------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           P    E              + LG+A AQ+H  YI++Q   GLV+VD HAAHER+++E++
Sbjct: 429 PATLREPAPASPRALPADEEHPLGMALAQLHGIYILAQNRRGLVLVDMHAAHERVVYEQL 488

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +Q  ++  +  Q LL P +    E + AL  EH ++L  LG      GP +IA+R +PA+
Sbjct: 489 KQALDARDLPRQDLLVPVVFHAQEKDVALAEEHQQELAGLGFDLRPAGPTSIAVRSVPAL 548

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L++ +I  + R ++ ++     +  L ++   +L+TMAC+GS+R+ R++   EMN LLR+
Sbjct: 549 LARGDIETMARAVLRDLASVGVSRLLTEQRNELLSTMACHGSVRANRRLSIEEMNALLRQ 608

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    + QCNHGRPT+++  +SD++KLF R
Sbjct: 609 MEVTERADQCNHGRPTWVQWSVSDLDKLFLR 639


>gi|52080311|ref|YP_079102.1| DNA mismatch repair protein [Bacillus licheniformis ATCC 14580]
 gi|52785687|ref|YP_091516.1| DNA mismatch repair protein [Bacillus licheniformis ATCC 14580]
 gi|319645908|ref|ZP_08000138.1| DNA mismatch repair protein mutL [Bacillus sp. BT1B_CT2]
 gi|81825299|sp|Q65JE1|MUTL_BACLD RecName: Full=DNA mismatch repair protein mutL
 gi|52003522|gb|AAU23464.1| MutL [Bacillus licheniformis ATCC 14580]
 gi|52348189|gb|AAU40823.1| MutL [Bacillus licheniformis ATCC 14580]
 gi|317391658|gb|EFV72455.1| DNA mismatch repair protein mutL [Bacillus sp. BT1B_CT2]
          Length = 636

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 182/637 (28%), Positives = 304/637 (47%), Gaps = 49/637 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + N+IAAGE++ERP+  +KEL+EN++DA SS +E  +   G +  ++ D+G 
Sbjct: 3   KIVQLPDDLSNKIAAGEVVERPASVVKELVENAIDANSSVIEIDVEEAGLASIKVLDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A  RH TSKI D  D   + T GFRGEALPSI +VSHL++ +       G 
Sbjct: 63  GMDAEDCRTAFLRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLSIKTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +I S +      GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 HLTLQGGRIISEQKAPSRRGTEITVTNLFFNTPARLKYMKTIHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L  +S +  ++GY  +
Sbjct: 182 PEVSIRLRHQGK---TLLQTNGNGDVRHVLAAIYGTAVAKKMLPLEARSLDFEVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  I   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVVNGRYIKNFPLVKAIHEGYHTLLPIGRHPITFIEINMDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HP+K  +R    T +   I  +I+    ++ +  S  + KK                   
Sbjct: 299 HPSKLEVRLSKETELHELIRDAIKDVFKQQQLIPSVQVPKKTAPLINKPEQQKLDFDQVR 358

Query: 342 ------------------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
                                   +SS  +D  P   + +    + +T+ +    E    
Sbjct: 359 EPAPLSDSDVEREYKPEPSFSAMKLSSLVKDPPPSAPVEREENVMQDTEPEWPGAEEYTP 418

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                   +P  + +N   EE+      +     Q+H  YI++Q  +GL I+DQHAA ER
Sbjct: 419 EAAPAVQAEPEQAGENVQDEETPKERVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQER 478

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           + +E  R+     +   Q LL P      + E   I +H +DL ++G+  E FG  +  +
Sbjct: 479 IKYEYFREKVGEVESEVQDLLVPLTFHYSKNEALTIDQHLDDLAKVGVFLESFGAGSYIV 538

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           R  P    K     ++ DII +++D  T   ++   E     M+C GSI++   ++  E+
Sbjct: 539 RCHPTWFPKGEETTIIEDIIQQVLDDRTID-IKKLREEAAIMMSCKGSIKANHHLRDDEI 597

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             LL E+ +  +   C HGRP  I     ++EK+F R
Sbjct: 598 TALLDELRRTSDPFTCPHGRPIIIHYSTYEMEKMFKR 634


>gi|313623817|gb|EFR93943.1| DNA mismatch repair protein MutL [Listeria innocua FSL J1-023]
          Length = 603

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 198/604 (32%), Positives = 310/604 (51%), Gaps = 19/604 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHLTL +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLTLETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ITLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFKISGYAILP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNAP 351
           PAK  +R      +   I Q I+ A ++  +     +SKK            SF ++  P
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKDAFHQLQLIPDGEVSKKQKEQQKSEQIQMSFEENRQP 360

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIAC 410
           K   P    S  N  E +   E     +D +     TY+ +  P + E +          
Sbjct: 361 KE--PPTLFSKPNIPEYVPSDERAPKDDDFILETMSTYNPETQPEQVEEQKERIPKMYPI 418

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E 
Sbjct: 419 GQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPSDEY 478

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++ 
Sbjct: 479 VRLEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIH 537

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              E+    M+C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++EK
Sbjct: 538 KLREDTAIMMSCKKSIKANHYLTMQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEK 597

Query: 591 LFGR 594
           +F R
Sbjct: 598 MFKR 601


>gi|170746511|ref|YP_001752771.1| DNA mismatch repair protein MutL [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653033|gb|ACB22088.1| DNA mismatch repair protein MutL [Methylobacterium radiotolerans
           JCM 2831]
          Length = 648

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/638 (37%), Positives = 365/638 (57%), Gaps = 47/638 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  +E  +  GG+   ++ D+G GM
Sbjct: 10  RRLDPVLVDRIAAGEVVERPASAVKELVENAIDAGARAIEVTVEAGGRRLIRVVDDGRGM 69

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           T +++ +AV+RH TSK+   D + I T GFRGEALPSIGAVS L +++R P+   GA + 
Sbjct: 70  TPDDLDLAVERHATSKLPGGDLTAIDTLGFRGEALPSIGAVSRLAIVTRTPEAEAGASLM 129

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRP     GT +EV +LF   PARL FLKS++ E   I + +RR+A   P +
Sbjct: 130 VEAGLKGQVRPAPAQRGTRIEVTELFAATPARLKFLKSDRAENAAIAETLRRLAATQPGI 189

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
            FT          +  ++       R++ V+G+DF+ NA+ ++       + G+ G+PT+
Sbjct: 190 RFTLRADAGQPLVLPAETGAEAELRRLAAVLGQDFLANALPVSLAREGFAVTGHVGLPTY 249

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +RG A   ++ +NGR V+D+ +L  IR AYA+T+   R+PV+ L +  DP  VDVNVHPA
Sbjct: 250 HRGAATHIHLAVNGRPVRDRLLLGAIRGAYADTLASDRHPVLGLAVACDPGLVDVNVHPA 309

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP----------- 351
           K+ +RFR P ++R  I+ +I  A+ + G  +++  + + + +      P           
Sbjct: 310 KTEVRFREPGLVRALIVSAIHDALRRGGARSATTGAARTLDALRPAGPPLATHSGATAPS 369

Query: 352 ------KTHLPKYATSL-------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV-- 396
                     P  A S+        +T  +   Q  R+       S    ++        
Sbjct: 370 LFRPTRPGPFPSGAPSVAAPSGYRPSTAWRPAPQPARVEPAGFGESAQAVWTGPESVAVA 429

Query: 397 -----------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                      E +EA  + LG A AQIH+ YI++QT DGLVIVDQHAAHERL++E+M+ 
Sbjct: 430 APPQADTRVADEAAEALDHPLGAARAQIHETYILAQTRDGLVIVDQHAAHERLVYERMKT 489

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
           +  +  I  Q LL P+++++   E   ++    DL RLG+  E FGP A+ +RE+PA L 
Sbjct: 490 EREAGGIARQGLLIPDVVEMSPEEADRLVAAAPDLDRLGLSIEAFGPGAVLVREVPAALI 549

Query: 506 KKNIPQLLRDIIDEIIDSSTTYT---------LQDRIENILATMACYGSIRSGRKMQSIE 556
             +   L+ DI+D +  S    +         L  R++ IL+ M+C+GSIR+GR+++  E
Sbjct: 550 GASTRDLVTDILDALQASGDEESGVAATEGGPLGRRLDAILSRMSCHGSIRAGRRLRPEE 609

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLREME  PNS QCNHGRPT I+LKL+DIE+LFGR
Sbjct: 610 MNALLREMEATPNSGQCNHGRPTSIELKLADIERLFGR 647


>gi|34581050|ref|ZP_00142530.1| DNA mismatch repair protein MutL [Rickettsia sibirica 246]
 gi|28262435|gb|EAA25939.1| DNA mismatch repair protein MutL [Rickettsia sibirica 246]
          Length = 610

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/611 (40%), Positives = 373/611 (61%), Gaps = 18/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NI+TFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKFDESDFLNINTFGFRGEALPSIAAISKMLITSKKRDADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDGKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SSPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPICAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F      K   P 
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNKQS-PV 359

Query: 358 YATSLTNTQEKLFLQENRLSTN------------DLLPSDDPTYSEDNDPVEESEATHYQ 405
                 N++   +      + N            D L         +N    E +     
Sbjct: 360 SKVINVNSKSADYRPTTHSTLNIVPQNHVCQKLIDTLSHAKIEQEVENRIEHEQQTRKQY 419

Query: 406 L-GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
             G A AQ+H NYIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++
Sbjct: 420 KLGAAKAQLHTNYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIKQRLLIPEIVE 479

Query: 465 LL-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           L  E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D 
Sbjct: 480 LPNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDF 539

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+L
Sbjct: 540 GKNIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPLSGQCNHGRPTYIEL 599

Query: 584 KLSDIEKLFGR 594
           KL DIE+LFGR
Sbjct: 600 KLKDIERLFGR 610


>gi|312114924|ref|YP_004012520.1| DNA mismatch repair protein MutL [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220053|gb|ADP71421.1| DNA mismatch repair protein MutL [Rhodomicrobium vannielii ATCC
           17100]
          Length = 605

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/606 (39%), Positives = 371/606 (61%), Gaps = 14/606 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LS+  IN+IAAGE+IERP+ A+KEL+EN++DA ++ +E +   GG S  +++D+G
Sbjct: 1   MTIRELSQVEINRIAAGEVIERPASAVKELVENAIDAGATAIEVIAESGGLSLIRVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM   ++ + V+RH TSK+   D   I T GFRGEALPS+G+V  L++++RP     G 
Sbjct: 61  IGMDEADLALCVRRHATSKLPSGDLMAIRTLGFRGEALPSLGSVGTLSIVTRPRALTRGH 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G + S VRP A  PGT VEVRDLF   PARL F+KSE+ E   I+DV++R+A+A 
Sbjct: 121 EIEVRGGETSPVRPAAARPGTCVEVRDLFAATPARLKFMKSERAENAAISDVVKRLALAC 180

Query: 180 PKVSFTFSTIKSNRYKM--NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V F  +  +    ++             R+++++G +F  +A  ++ + + + L GY 
Sbjct: 181 PHVGFALTVGERASLQLARAADGDENAVRARLARIMGREFGEDAEPVHLERDGLALTGYA 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G PT NR +A+  YVF+NGR V+D+ + S IR AY + +P GR+P+ VL L +    VDV
Sbjct: 241 GRPTLNRPDASLQYVFVNGRPVKDRLLFSAIRGAYVDVVPRGRFPLAVLFLTVRVEDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------FHQDN 349
           NVHPAK+ +RFR  +++R  ++ ++  A+   G   +        +S        +    
Sbjct: 301 NVHPAKAEVRFREASLVRALVVSALHDALRCAGAMAARPTGALTPASAAAPEPLQYRAPL 360

Query: 350 APKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                 P  +T     T+     +E  L+ +    S        ++  +  +A + +LG+
Sbjct: 361 RTWPQSPYRSTYPQPMTEPGAGFEETALAFDTEDASQSSANGATHEARDSEDANYERLGM 420

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H  YI+S+T DG++++DQHAAHER+++EK++      +I  Q LL PEI+++ E 
Sbjct: 421 ARAQVHNTYILSETPDGVILIDQHAAHERIVYEKLKAALLGGRIARQLLLIPEIVEMPED 480

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           + AL+ EH E +   G+  E FGP AI +RE+PA+L   ++  L+RD+  E+ DS    T
Sbjct: 481 DAALVAEHAETVAGSGLALESFGPGAIIVREVPALLGHCDLQTLVRDLAHELKDS--ANT 538

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           ++ R+  I ATMAC+GS+R+GR M+  EMN LLREME  PN++QCNHGRPT+++L   D+
Sbjct: 539 VEARLHAICATMACHGSVRAGRPMRLDEMNALLREMETTPNAAQCNHGRPTYVELSRGDL 598

Query: 589 EKLFGR 594
           E+LF R
Sbjct: 599 ERLFER 604


>gi|262279503|ref|ZP_06057288.1| DNA mismatch repair ATPase [Acinetobacter calcoaceticus RUH2202]
 gi|262259854|gb|EEY78587.1| DNA mismatch repair ATPase [Acinetobacter calcoaceticus RUH2202]
          Length = 649

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 211/638 (33%), Positives = 338/638 (52%), Gaps = 45/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++ +AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHSEDLALAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQEVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G  F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGSQFVQNAYWMDAESISMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADMQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------VLSKKMI 342
           NVHP K  IRF N   +  F+    ++ +++   +++                    K  
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLSQFQTASADLAQAMKVDETSDYSVQPQPKYQ 369

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT-------------- 388
             F    A +   P       N   +L    N      +  +D                 
Sbjct: 370 EQFALHRANEALNPDNEARAQNAPTELLTDFNASRPQAVHYADQTPRYNGSPQLNNALKT 429

Query: 389 -----------YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                      +S + D    ++   + LGIA AQ+H  Y+++Q T+GL+IVD HAAHER
Sbjct: 430 YLAPLRDQPANFSVNEDIEPVTKVDEFPLGIAIAQLHGIYVLAQNTEGLIIVDMHAAHER 489

Query: 438 LIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           ++ ++M+  ++  +  TSQ LL P++I +   +   + E    L RLG++ + +G   I 
Sbjct: 490 ILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAMRVEELKPQLERLGLEIDLYGDEQII 549

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   E
Sbjct: 550 VRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLSE 609

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 MNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 647


>gi|16800509|ref|NP_470777.1| DNA mismatch repair protein [Listeria innocua Clip11262]
 gi|20455106|sp|Q92BV2|MUTL_LISIN RecName: Full=DNA mismatch repair protein mutL
 gi|16413914|emb|CAC96672.1| DNA mismatch repair protein [Listeria innocua Clip11262]
          Length = 603

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 199/604 (32%), Positives = 313/604 (51%), Gaps = 19/604 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +A  RH TSKI +  D   +HT GFRGEALPSI +VSHLTL +       G  
Sbjct: 65  IEEEDVAIAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLTLETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNAP 351
           PAK  +R      +   I Q I+ A ++  +     +SKK            SF ++  P
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKDAFHQLQLIPDGEVSKKQKEQQKSEQIQMSFEENRQP 360

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIAC 410
           K   P    S  N  E +   E     +D +    PTY+ +  P + E +          
Sbjct: 361 KE--PPTLFSKPNIPEYVPSDEIVPKEDDFILETMPTYNPETQPEQVEEQKERIPKMYPI 418

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E 
Sbjct: 419 GQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPSDEY 478

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++ 
Sbjct: 479 VRLEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIH 537

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              E+    M+C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++EK
Sbjct: 538 KLREDTAIMMSCKKSIKANHYLTMQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEK 597

Query: 591 LFGR 594
           +F R
Sbjct: 598 MFKR 601


>gi|325122664|gb|ADY82187.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 649

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 210/640 (32%), Positives = 342/640 (53%), Gaps = 49/640 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLALAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++    +   V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFEHQEVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G  F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGSQFVQNAYWIDAESISMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADMQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  IRF N   +  F+    ++ + +     S+ L + M +  + D + +   PK
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQT-ASADLVQAMKADENSDYSVQPQ-PK 367

Query: 358 YATSLTNTQEKLFLQENRLSTND------------------------------------- 380
           Y    +  +    L  +  +                                        
Sbjct: 368 YQEQFSLHRANETLNSDSEARTQHAPTELLTDFNASHPQAIHYADQTPKYNGSAQLNNAL 427

Query: 381 -----LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                 L     ++S + D    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAH
Sbjct: 428 KTYLAPLRDQPASFSVNEDVEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAH 487

Query: 436 ERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
           ER++ ++M+  ++  +  TSQ LL P++I +   +   + E    L RLG++ + +G   
Sbjct: 488 ERILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEELKPQLERLGLEIDLYGDEQ 547

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
           + +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++  
Sbjct: 548 VIVRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSL 607

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            EMN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 608 SEMNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 647


>gi|119899416|ref|YP_934629.1| DNA mismatch repair protein [Azoarcus sp. BH72]
 gi|119671829|emb|CAL95743.1| DNA mismatch repair protein [Azoarcus sp. BH72]
          Length = 621

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 205/627 (32%), Positives = 330/627 (52%), Gaps = 41/627 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I++L + ++NQIAAGE++ERP+  +KE++EN++DA +  VE  +  GG    +ITD+
Sbjct: 1   MPQIQRLPDLLVNQIAAGEVVERPASVLKEVLENAVDAGARAVEVQLEQGGVRRIRITDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+ +A++RH TSKI+  DD   + T GFRGEAL +I  V+   + SR      
Sbjct: 61  GCGIARDELALALERHATSKIATLDDLERVGTMGFRGEALAAIAGVARTVITSRAEGAAH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +I  S     S+ P A+N GT+V+V DL++  PAR  FLKSE  E     +V RR+A+
Sbjct: 121 AWRIDGSD---RSLAPAALNQGTVVDVADLYYNTPARRKFLKSEGTEYAHCDEVFRRVAL 177

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P ++   S      +++      G    RI+ ++G+DF+  A  +  +   + L GY 
Sbjct: 178 ARPDIALQLSHNGRVAHRLPV----GEPVRRIAALMGDDFLAQARAVVAEGGPLRLTGYA 233

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P ++R + +  Y F+NGR V+DK +   +R AYA+ +   R+P  VL LE+DP  VDV
Sbjct: 234 SLPAYSRASRDAQYFFVNGRFVRDKLLTHALRQAYADILHGARHPAYVLFLELDPAGVDV 293

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA-----PK 352
           NVHPAK  +RFR+   +  F+  ++ +A+ + G + +        +            P 
Sbjct: 294 NVHPAKIEVRFRDSRAVHQFVFHAVSRALAESGAALAGGNGAGEPAPLPSSGQRVAASPP 353

Query: 353 THLPKYATSLTNTQEKLFLQENRLS-------------------------TNDLLPSDDP 387
                   S    Q +L +     S                                   
Sbjct: 354 AAGAGQWPSAQAVQGRLAMDSGAASHRYYDFVAAARPDGTGGAAGAAGLVAAPPRMDAAA 413

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             S        S      LG A AQ+H  Y+++Q   GLV+VD HAAHER+++EK++   
Sbjct: 414 RPSGYAPAPLPSADKAPPLGYALAQLHGIYVLAQNESGLVLVDMHAAHERILYEKLKVVL 473

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           + T  + Q LL P +  +   + A+  E  E L R+G +    GP  +A+R +PA+L+  
Sbjct: 474 DGTP-SIQRLLIPAVFSVSARDLAVAEECGEVLARMGFEVGVAGPQELAVRTVPALLASA 532

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
            + +L+R +++E+ +   T  +  R   +LATMAC+G++R+ R +   EMN LLR+ME  
Sbjct: 533 PVAELMRKLLEELREFPATEVITARRNELLATMACHGAVRANRTLTLPEMNALLRDMEAT 592

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             + QCNHGRPT+ +L ++D+++ F R
Sbjct: 593 ERADQCNHGRPTWTQLTMADLDRFFMR 619


>gi|302670849|ref|YP_003830809.1| DNA mismatch repair protein MutL [Butyrivibrio proteoclasticus
           B316]
 gi|302395322|gb|ADL34227.1| DNA mismatch repair protein MutL [Butyrivibrio proteoclasticus
           B316]
          Length = 666

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 194/663 (29%), Positives = 325/663 (49%), Gaps = 74/663 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L +  I+QIAAGE++ERP+  +KEL+EN++D+ ++ V   I GGG    ++TDNG G
Sbjct: 4   INELDKNTIDQIAAGEVVERPASVVKELVENAIDSGATAVTVEIKGGGIDMIRVTDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   +I  A +RH TSK+   DD  +IH+ GFRGEAL SI +V+ +  +++   + TG +
Sbjct: 64  IEKSQIRKAFKRHATSKLKNIDDLFSIHSLGFRGEALSSISSVAQVDCITKTKDDLTGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
            +I+G + + +  +    GT   +R+LF+  PAR  FLK+ Q E + I DV+  +A+  P
Sbjct: 124 YSINGGEEAGMDEIGAPDGTTFIIRNLFYNTPARKKFLKTPQTEGSYIGDVMEHLALDNP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF +   K +++     S NG+  E I ++ G D   +   ++   + IT++GY G P
Sbjct: 184 TISFHYINNKDDKF---STSGNGDLKELIYRIYGRDVSVSVRPISASDHGITVEGYLGEP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T NR N N    F+NGR V+DK I   +   Y + + + ++P  +L + +DP  VDVNVH
Sbjct: 241 TLNRSNRNFEIFFVNGRYVKDKIISKALEEGYKQYLMMHKFPFAILHIRMDPSMVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +RF N  ++ +FI  S++  ++ + +   ++LS K      + N   +     +T
Sbjct: 301 PAKLEVRFNNQALLYDFIKTSVENVLSAQEMIPDALLSSKDDEKASEANGANSLSSTAST 360

Query: 361 -------------------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN-DPVEESE 400
                                    E++  +EN+++ ++ + +          + V +S 
Sbjct: 361 SGLAPEKVHAHETEKPSNRPAPQPFERVRFEENKVAESEPVYATGVKEKPIKIEDVNKSA 420

Query: 401 ATHYQLG------------------------------------------------IACAQ 412
                 G                                                    Q
Sbjct: 421 VWTRIFGDLDGSKAEKNDRPSSIIKQQDAIVVEKKPVQLNLFDEKVLTKENVKEYEILGQ 480

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           I   Y I    D + +VDQHAAHE++ +E+M + + S  I SQ +  P I+ L   E  +
Sbjct: 481 IFGTYWIIGFKDKMFMVDQHAAHEKVNYERMMKRYKSGDILSQMVNPPVIVTLSAAEEEI 540

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPA-ILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            +E+ +   +LG   E FG +  A+R IP  +    N  ++ ++I+DE+   ++     D
Sbjct: 541 FLEYRQYFEKLGFNIENFGGHEYAMRAIPVDLFGCDNEKEMFQEILDELSHETSLDRTPD 600

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            I   +A+MAC  S++   +M + EM  LL E+ K  N   C HGRPT I +   +I+K 
Sbjct: 601 VINYKIASMACKASVKGNTRMTTQEMEALLDELLKLDNPYNCPHGRPTIISMSKYEIDKK 660

Query: 592 FGR 594
           F R
Sbjct: 661 FKR 663


>gi|332973074|gb|EGK11011.1| DNA mismatch repair protein MutL [Kingella kingae ATCC 23330]
          Length = 624

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 217/624 (34%), Positives = 341/624 (54%), Gaps = 35/624 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L + +INQIAAGE++ERP+ A+KE++ENSLDA +++++  IAGGG    ++ DNG 
Sbjct: 3   SIIQLPDHLINQIAAGEVVERPANALKEILENSLDAGATQIQIDIAGGGIKLIRVCDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E +P+A+ RH TSKI    D   + + GFRGE L S+ +VS LTL SRP      A
Sbjct: 63  GIDAESLPLALSRHATSKIKTLSDLERVRSMGFRGEGLASVASVSRLTLTSRPATQAHAA 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI         V   +   GT VEV +LFF  PAR  FLKSE  E      ++ R+A+A 
Sbjct: 123 QIKAEDGVFQPVSAASHPVGTTVEVAELFFNTPARRKFLKSESTEYAHCLTMVERLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+FT        +    QS      +R++Q++G +F   ++ ++ ++  + L G+   
Sbjct: 183 PNVAFTLKNNDKLIFAYPAQSP----EQRVAQILGAEFHAASLPVSSENGALQLNGFVSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PTF +G ++  Y F+N R V+DK +L  ++ AY + +     P   L L IDP  VDVN+
Sbjct: 239 PTFAKGKSDTQYFFVNQRFVRDKVMLHAVKQAYRDVLHNQITPAFALFLTIDPSLVDVNI 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI-------STSSVLSKKMISSFHQDNAPK 352
           HP K+ IRFR+   +   +   + KA+            +  ++L ++M +    + AP 
Sbjct: 299 HPTKTEIRFRDSQAVHQLVFHCVNKALANTRADLTSSVSNAGAILHERMANDTAHEIAPN 358

Query: 353 THLPKYATSLTNT---------------QEKLFLQENRLS---TNDLLPSDDPTYSEDND 394
            +     T  T +               Q  L L+E + +     +L   DD      + 
Sbjct: 359 AYESSLHTRPTPSASVAPAPYAAYHAPRQSSLPLRERQAALDTYAELYRHDDDIEPMPSH 418

Query: 395 PVEE----SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
            V+          + LG A AQ+   YI++QT DGL++VD HAA ER+ +EK++   ++ 
Sbjct: 419 TVQAALPTESREQHTLGFALAQLLGIYILAQTEDGLILVDMHAAAERINYEKLKTAHHAN 478

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            I +Q LL P +      E A + E    L   G+         IA+R +P +LSK ++ 
Sbjct: 479 GIQAQMLLIPVVFAATHAEQAAVDEFSHSLREYGLDLVNAETGKIAVRTVPNMLSKSDVA 538

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            L R+++ +++ +  + T++DR   IL+TMAC+GS+R+GR++   EMN LLR+ME+ P S
Sbjct: 539 TLAREVLRDLMATGQSPTVRDRENEILSTMACHGSVRAGRQLTLPEMNALLRDMEQFPRS 598

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
           +QCNHGRPT++K+ L D++ LF R
Sbjct: 599 NQCNHGRPTWVKIGLDDLDALFLR 622


>gi|226952695|ref|ZP_03823159.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter sp. ATCC
           27244]
 gi|226836563|gb|EEH68946.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter sp. ATCC
           27244]
          Length = 657

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/648 (32%), Positives = 339/648 (52%), Gaps = 55/648 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   +A GG +  +I DNG 
Sbjct: 8   RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIIRVAQGGATLIEIIDNGN 67

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+AV RH TSKI  +DD   I + GFRGEAL SI AVS LTL S   +   G 
Sbjct: 68  GIHPEDLPLAVMRHATSKIQTADDLHAIVSLGFRGEALASIAAVSRLTLTSSQDEQGVGY 127

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        ++ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 128 QVEVNGTAFDHQQIQAVAAQKGTHIRVQDLFFNVPARRKFLKKPSTEFGHIEEIVRRLAL 187

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            + ++ F      + R  +    +     +R+ Q++G+ FI NA  ++ +S  + L G+ 
Sbjct: 188 THFEIRFVLEHNDNIRLNLPVADSGELRYQRVQQLLGQQFIQNAYWIDAESINMRLSGWL 247

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 248 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYEGILHGHQHSSYLLFLEVDPENIDV 307

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  IRF N   +  F+    +  +++   +++ +     +       A     PK
Sbjct: 308 NVHPTKHEIRFLNQREVHEFVRHYAKATLSQFQTASADLAQAMKVDETDHQAAQYQPQPK 367

Query: 358 YATSL---------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-------- 394
           Y                   T+   +L  + N+     +  +   +     +        
Sbjct: 368 YQEQFNLHKAVVTEPLSDQQTDISTELLTEFNQSRPQAVHYTSGQSQQPRYNGSGQLNNA 427

Query: 395 ---------------------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
                                       V +S    + LGIA AQ+H  YI++Q T+GL+
Sbjct: 428 LKTYLAPLRESDVPTTAFDSGNDTVDRDVAQSRVDEFPLGIAIAQLHGIYILAQNTEGLI 487

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           IVD HAAHER++ ++M+  ++  +   SQ LL P+++ +   +   I E    L RLG++
Sbjct: 488 IVDMHAAHERILLQQMKAAWDKPEFWVSQQLLIPKVVSITRMQATRIEELQPQLQRLGLE 547

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            +++G   + +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++
Sbjct: 548 IDQYGDEQVIVRGVPAILHKADFSNLIPELLNDLDPNDEARGLLQKRDELLAGMACHGAV 607

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ R++   EMN LLR+ME+   +SQCNHGRPT+    L  ++KLF R
Sbjct: 608 RAHRQLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLHQLDKLFAR 655


>gi|229587254|ref|YP_002845755.1| DNA mismatch repair protein [Rickettsia africae ESF-5]
 gi|259511149|sp|C3PM22|MUTL_RICAE RecName: Full=DNA mismatch repair protein mutL
 gi|228022304|gb|ACP54012.1| DNA mismatch repair protein MutL [Rickettsia africae ESF-5]
          Length = 610

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 248/610 (40%), Positives = 375/610 (61%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ V+   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKIDIVLERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NI+TFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKFDESDFLNINTFGFRGEALPSIAAISKMLITSKKRDADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E     DV++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVDVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDGKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R+V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SSPTYNRASSEDQFLFINNRSVKDKLLQVALRVAYQDYLARDRYPICAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKT 353
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F        +P +
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNKQSPVS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDNDPVEESEATHYQL 406
            +    +   + +       N +  N       D L         +N    E +      
Sbjct: 361 KVINVNSKSADYRPTTHSTLNTVPQNHVCQKLIDTLSHAKIEQEVENRIEHEQQTRKQYK 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  YIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIKQRLLIPEIVEL 480

Query: 466 -LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D  
Sbjct: 481 LNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LK
Sbjct: 541 KNIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPLSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|95931317|ref|ZP_01314032.1| DNA mismatch repair protein MutL [Desulfuromonas acetoxidans DSM
           684]
 gi|95132618|gb|EAT14302.1| DNA mismatch repair protein MutL [Desulfuromonas acetoxidans DSM
           684]
          Length = 628

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/626 (31%), Positives = 322/626 (51%), Gaps = 37/626 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E + NQIAAGE++ERP+  +KEL+EN+LDA+++ V   +  GGK   +++DNGF
Sbjct: 6   RIAILPETLCNQIAAGEVVERPASVVKELVENALDAQATEVTVDVERGGKKKIRVSDNGF 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ +  +RH TSKI    D  ++ + GFRGEALPSI AVS L ++S      TG 
Sbjct: 66  GMSKEDLFLCFERHATSKIRSEKDLFHLSSLGFRGEALPSIAAVSRLAVVSGQAGEETGN 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +   ++    P A + GT  E+RDLFF +PAR  FL+ ++ E   I ++I R+++A+
Sbjct: 126 RLELVAGEVRHHEPEAASVGTRFEIRDLFFNLPARRKFLRRDETEFGHIAEIITRLSLAH 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F     +     +       +   R++ V+G   +   ++++   + + L G+ G 
Sbjct: 186 PHVHFRLIHNQRTILDLY---RQKSLKARVADVLGRSVVEKLIDVDCGDDRLHLSGFIGD 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT NR +    Y FINGR V+D+ +   I   Y   +  GRYP+ VL L ++P +VDVNV
Sbjct: 243 PTLNRSSTQGIYSFINGRFVKDRVLQHAILDGYRHLLMKGRYPMCVLFLALEPEKVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI----------------- 342
           HP K  +RF +   + +F+  S+++ + +           KM                  
Sbjct: 303 HPTKHEVRFHDQRGVHDFVSTSLRQQLRRHQDVPVCDGEPKMAPAVAPPAEPVTQPDLNL 362

Query: 343 ----------SSFHQDNAPKTHLPKYATSLTNTQEKLFL----QENRLSTNDLLPSDDPT 388
                     S+   +      +P    + +  +E         +  +S     P     
Sbjct: 363 RHVPAPSSVRSASVVEAQAAVSMPLQPPAASQVRESFPAYDDGGKPPVSVISSSPVGCHA 422

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
             E    +EES A  +       Q H++YI+ +  D LV++DQHAAHER+ FE+++    
Sbjct: 423 DGEKTLDLEESSAY-FSTLRIIGQFHRSYILCEDGDDLVLIDQHAAHERIGFERLKNQLA 481

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
              I  Q LL PE+I+L   E A + +  E    +G   E FG  + A++ +PA + KK+
Sbjct: 482 QGSIEQQELLFPEVIELNLREDAELQDCRERFESMGFVLEPFGGTSWAVKAVPAYIEKKD 541

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
           I  ++ D++ +     ++   Q  I+ +L  MAC+G IR+ + +Q  EM  LL +++   
Sbjct: 542 IKTMVCDMLTDFSSVGSSDISQQAIDEVLIKMACHGMIRANQTLQLDEMVALLHQLDDVD 601

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +  C HGRP   +L L D+EK+F R
Sbjct: 602 FNRHCPHGRPVMQRLTLHDVEKMFRR 627


>gi|332185051|ref|ZP_08386800.1| DNA mismatch repair MutL family protein [Sphingomonas sp. S17]
 gi|332014775|gb|EGI56831.1| DNA mismatch repair MutL family protein [Sphingomonas sp. S17]
          Length = 583

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/585 (36%), Positives = 348/585 (59%), Gaps = 14/585 (2%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +ERP+ A+KEL+ENS+DA ++R+  V+  GG    ++ D+G GM+++++ +A++RHCTSK
Sbjct: 2   VERPASALKELVENSIDAGATRIAIVLVQGGIGRIEVADDGCGMSADDMALALERHCTSK 61

Query: 80  ISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
           + D+    + T GFRGEALPSI +V+ +T+ SRP  ++ G    +   ++    P A+ P
Sbjct: 62  LPDEAIEAVLTLGFRGEALPSIASVARVTIESRPAGSD-GWSRVVDNGEVLRDGPAAVPP 120

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF 198
           GT + V DLF  +PAR  FL+S + E     D++RR+A+A P ++FT          +  
Sbjct: 121 GTRIVVEDLFARVPARRKFLRSPRSEYAACLDMVRRLAMARPDIAFTLEHDGRRVLTV-- 178

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRT 258
                  P R++ +       N+V ++   + ++L G  G+PTFNRG A+  Y+F+NGR 
Sbjct: 179 -PGGEERPGRVAGLTDRALAENSVAIDWVRDMVSLGGVAGLPTFNRGIADHQYLFVNGRP 237

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           V+D+ ++  IR AYAE +P  R+ VV L L++ P +VDVNVHPAK+ +RFR+P +IR  I
Sbjct: 238 VRDRLLMGAIRGAYAEMLPRDRHAVVALFLDMPPSEVDVNVHPAKTEVRFRDPALIRGMI 297

Query: 319 IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS---------LTNTQEKL 369
           +  +++A+++ G  +        ++ +  +   +      A +             + ++
Sbjct: 298 VSGLRRALDEAGHRSVQRPPDSALAMWQTEAVGEAGAFPPAPAAPLPRDGWGPAAPETRV 357

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
             +++  +      +  P    +       E   + +G+A  Q+ + YI+++  DGLV+V
Sbjct: 358 MERQSLFAPRPGFMAPPPLARAEAAHAPPPEVRQFPMGVARGQVAKTYIVAEAEDGLVLV 417

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAAHERL+ E+MR      ++ SQ +L PE+++L E  C  +    E+L   G+  ER
Sbjct: 418 DQHAAHERLVLERMRAALTGGRVASQAMLIPEVVELDEPACDRLEARAEELAEFGLDLER 477

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FGP A+ +R  PA+L + +   L+ D+ DE+       +L++R++++ ATMAC+GS+R+G
Sbjct: 478 FGPTAMLVRSTPALLGQSDPKGLVSDLADELAAFDQALSLRERLDHVAATMACHGSVRAG 537

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R +   EMN LLREME  P+S QCNHGRPT++KL+  DIEKLFGR
Sbjct: 538 RILSVAEMNALLREMEVTPHSGQCNHGRPTWVKLQHGDIEKLFGR 582


>gi|329851130|ref|ZP_08265887.1| DNA mismatch repair protein MutL family protein [Asticcacaulis
           biprosthecum C19]
 gi|328839976|gb|EGF89548.1| DNA mismatch repair protein MutL family protein [Asticcacaulis
           biprosthecum C19]
          Length = 616

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 229/612 (37%), Positives = 359/612 (58%), Gaps = 20/612 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L +  IN+IAAGE++ERP+ A+KEL+EN++DA +  ++     GG S   I DNG G
Sbjct: 4   IQRLPQDTINRIAAGEVVERPASAVKELVENAIDAGARHIDIRAEQGGLSRILIEDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKISD------DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           M   ++ +AV+RH TSK+        D  +I T GFRGEALPS+G+V+ L ++S+    +
Sbjct: 64  MAGPDLELAVERHATSKLKPQADGTWDLLHIQTLGFRGEALPSMGSVARLNIVSKSRGGD 123

Query: 117 T-GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
               Q+               + GT +++RDLF+  PARL F+KSE+ E   I + ++R 
Sbjct: 124 ALAIQVDGGAVSGLKPAAFGGDHGTRIDLRDLFYATPARLKFMKSERSENMAIAEEVKRQ 183

Query: 176 AIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           A+A+  V F+         K+   Q+       R++ ++G DF +NA+ +++    + L 
Sbjct: 184 AMAHEDVGFSLELDGKRVLKLFAEQAGFEGRLRRLAAILGSDFGDNALLIDQAREGVRLT 243

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY G+PTF+RGNA   Y+F+N R V+DK +   +R AYA+ +   R+P+  L +EIDP+ 
Sbjct: 244 GYAGLPTFSRGNAMHQYLFVNNRPVRDKLLTGALRAAYADFLARDRHPLAALFVEIDPQD 303

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-- 352
           +DVNVHPAK+ +RFR+P ++R  II +++  +   G   ++ +++  ++ F  ++     
Sbjct: 304 LDVNVHPAKAEVRFRDPNLVRGLIIGALKHGLASAGHRAATTVAQTALTGFRVESVQPLL 363

Query: 353 ----------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
                       +  Y           F   +  +    L   +    E    V  S   
Sbjct: 364 NLNRPTPSQIAAVRPYMAPEPFAPTARFEPVSYETAAYALGVSEAPVLERPVDVAASAVD 423

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            + LG A AQIH+ YII+QT DGLVIVDQHAAHERL++E+M+       + SQ+LL PEI
Sbjct: 424 AFPLGAARAQIHETYIIAQTADGLVIVDQHAAHERLVYEEMKVAMAQGHVQSQSLLIPEI 483

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           +DL   E A ++   +DL  +G++ E FGP ++ +R+IPA++   +I  L+RD++D++ +
Sbjct: 484 VDLEREEVARLVARRDDLATMGLQVEAFGPTSVLVRDIPALMGDCDISGLVRDLVDDLTE 543

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                 L++R+  I    AC  S+RSGR++ + EMN LLR+ME  P+S QCNHGRPT+++
Sbjct: 544 HGELLALKERMAEICGDHACRHSVRSGRRLNAHEMNALLRQMEATPHSGQCNHGRPTYVE 603

Query: 583 LKLSDIEKLFGR 594
           LKL DIEKLFGR
Sbjct: 604 LKLKDIEKLFGR 615


>gi|293609402|ref|ZP_06691704.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827854|gb|EFF86217.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 649

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 205/638 (32%), Positives = 339/638 (53%), Gaps = 45/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHPDDLALAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQEVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G  F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGSQFVQNAYWIDAESISMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADMQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------- 338
           NVHP K  IRF N   +  F+    ++ + +   +++ +                     
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTASADLAQAMKADESSDYSVQPQPKYQ 369

Query: 339 -----KKMISSFHQDNAPKTHLPKYA--TSLTNTQEKLFLQENRLSTND----------- 380
                 +   + + D+  +T        T    ++ K     ++    +           
Sbjct: 370 EQFSLHRANETLNSDSEARTQPAPTELLTDFNASRPKAVHYADQTPKYNGSAQLNNALKT 429

Query: 381 ---LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
               L      +S + D    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHER
Sbjct: 430 YLAPLRDQPTNFSVNEDIEPVAKVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHER 489

Query: 438 LIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           ++ ++M+  ++  +  TSQ LL P++I +   +   + E    L RLG++ + +G   + 
Sbjct: 490 ILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEELKPQLERLGLEIDLYGDEQVI 549

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   E
Sbjct: 550 VRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLSE 609

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR+ME+   +SQCNHGRPT+    L  ++KLF R
Sbjct: 610 MNALLRQMEQTEFASQCNHGRPTWRAFPLPQLDKLFAR 647


>gi|299822954|ref|ZP_07054840.1| DNA mismatch repair protein MutL [Listeria grayi DSM 20601]
 gi|299816483|gb|EFI83721.1| DNA mismatch repair protein MutL [Listeria grayi DSM 20601]
          Length = 605

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 191/605 (31%), Positives = 307/605 (50%), Gaps = 17/605 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + N+IAAGE++ERP+  +KEL EN++DA S+ ++ +I   G +   + DNG 
Sbjct: 4   KIVELTELLSNKIAAGEVVERPASVVKELTENAIDAGSTVIDILIEEAGLNKITVIDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A  RH TSKI +  D   +HT GFRGEALPSI +V+ + + +       G 
Sbjct: 64  GIEPEDVETAFLRHATSKIKNEHDLFRVHTLGFRGEALPSIASVAQVKITTST-GEKQGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G KI          GT +EV  LF+  PARL +LKS   E   ITD+I R+A+++
Sbjct: 123 HLTIQGGKILEEISSDARKGTEIEVTQLFYNTPARLKYLKSLPTELGNITDIINRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF  S        +   S NG+  + I+ + G      A+ ++ +S +  + GY  +
Sbjct: 183 PEISFRLSHNGK---SLLQTSGNGDLRQVIAAIYGVSIARKALPVSAESLDFKVNGYAIL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NR N N   + +NGR +++  ++  I+  Y   +P+GRYP++VL +E+DP  VDVNV
Sbjct: 240 PEINRANRNYVSMIVNGRYIKNFALVKAIQEGYHTLLPIGRYPIIVLQIEMDPIIVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---------QDNA 350
           HPAK  +R      +   I Q ++ A +++ +  S  +SKK   +           Q   
Sbjct: 300 HPAKLEVRLSKEKELGQLIAQMLKGAFHQQQLIPSGEVSKKQKLASEQLQIDFDKKQSEP 359

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTN-DLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
           P+   P +             +EN L  + D L        E+ + V  +          
Sbjct: 360 PRLDQPFHYKQPPEQDNSYVAEENALYESLDALLDRPEEKQEEQEEVTITPTERLPKLYP 419

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+H  YI++Q   GL I+DQHAA ER+ +E  R+         Q LL P +++    E
Sbjct: 420 IGQMHATYILAQNEKGLYIIDQHAAQERIKYEFYREKIGEVARELQDLLVPIVLEFSTDE 479

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
              + E  + L  +G+  E FG N+  IR  P    K    + LR+IIDE +++  + ++
Sbjct: 480 YVRLEEQKQKLEEVGVFLESFGQNSYIIRSHPNWFPKDQEEETLREIIDEALNAP-SISI 538

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               E+    M+C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++E
Sbjct: 539 HKLREDTAIMMSCKKSIKANHYLTKEDMEALLDTLREASDPFTCPHGRPVVIEYTTYELE 598

Query: 590 KLFGR 594
           K+F R
Sbjct: 599 KMFKR 603


>gi|262370364|ref|ZP_06063690.1| DNA mismatch repair ATPase [Acinetobacter johnsonii SH046]
 gi|262314706|gb|EEY95747.1| DNA mismatch repair ATPase [Acinetobacter johnsonii SH046]
          Length = 646

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 210/636 (33%), Positives = 350/636 (55%), Gaps = 43/636 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+  + NQIAAGE+IERP+  +KEL+ENS+DA ++ +   +  GG +  +I DNG 
Sbjct: 9   RIHTLNPALANQIAAGEVIERPASVVKELLENSIDAGATELIIRVEQGGSTLIEIMDNGR 68

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++P+AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S    +  G 
Sbjct: 69  GIHAEDLPLAVMRHATSKIQTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQVDDGIGY 128

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        ++ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 129 QVEVNGTAFDRQEIQAVAAPKGTHIRVQDLFFNVPARRKFLKKPGTEFGHIEEIVRRLAL 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F     +S +  +    +     +R+ Q++G  F  NA  ++  S  + L G+ 
Sbjct: 189 THFDIRFVLEHNQSIKLNLPIADSGELRFQRVQQLLGRAFTENAYWMDADSINMRLTGWL 248

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 249 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHAGYLLFLEVDPENIDV 308

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------------- 335
           NVHP K  IRF N   +  F+    ++ +++   +T+                       
Sbjct: 309 NVHPTKHEIRFLNQREVHEFVRHYAKETLSQFQTATADLSDAMKIAENQASMSVQPRYQE 368

Query: 336 --VLSKKMISSFHQDNAPKTHLPKYATSLT-----NTQEKLFLQENRLST---------N 379
              L +++ S+   + AP   L  +++S       + Q   +    +L+           
Sbjct: 369 PLQLHRRVESAQTGEQAPSDVLTDFSSSQPQGVHYSAQPSRYQGSQQLNNALQSYLAPLR 428

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D   + D   S  +  V+ ++   + LGIA AQ+H  Y+++Q T+GL+IVD HAAHER++
Sbjct: 429 DASSAVDQAQSLADFTVQSTKVDEHPLGIAIAQLHGIYVLAQNTEGLIIVDMHAAHERIL 488

Query: 440 FEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            ++M+  ++  +  TSQ LL P++I++   +   + E  + L RLG++ +++G   + +R
Sbjct: 489 LQQMKSAWDKPEFWTSQQLLIPKVINITRMQAIRVEELKDQLARLGLEIDQYGDEQVIVR 548

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +PAIL K N   L+ ++++++  +     L  + + ILA MAC+G++R+ R +   EMN
Sbjct: 549 GVPAILHKANFEALVPELLNDLDPNDEAQGLLQKRDQILAGMACHGAVRAHRILGLSEMN 608

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LLR+ME+   +SQCNHGRPT+    L+ ++KLF R
Sbjct: 609 ALLRQMEQTEFASQCNHGRPTWRAFPLAQLDKLFAR 644


>gi|39997099|ref|NP_953050.1| DNA mismatch repair protein [Geobacter sulfurreducens PCA]
 gi|81832022|sp|Q74BP0|MUTL_GEOSL RecName: Full=DNA mismatch repair protein mutL
 gi|39983989|gb|AAR35377.1| DNA mismatch repair protein MutL [Geobacter sulfurreducens PCA]
 gi|298506112|gb|ADI84835.1| DNA mismatch repair protein MutL [Geobacter sulfurreducens KN400]
          Length = 606

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 200/606 (33%), Positives = 324/606 (53%), Gaps = 17/606 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N+IAAGE++ERP+  +KEL+EN+LDA    +   I GGG+   +ITD+G 
Sbjct: 4   RIRILPEILTNKIAAGEVVERPASVVKELVENALDAGCGEIIVEIEGGGRRLIRITDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  MA++RH TSKI+  DD  ++ T GFRGEALPS+ +VS  TL +R   +  G 
Sbjct: 64  GMSREDALMALERHATSKIATDDDLFSLATLGFRGEALPSVASVSRFTLATRERGSIEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G KI  V+   M  GT+V VR+LFF  PARL F+KS + E   + D++ R+A++ 
Sbjct: 124 EIYAEGGKIREVKACGMAEGTVVSVRNLFFNTPARLKFMKSVETEGGHVADLVTRLALSR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT  +         F++ +G   +R++ ++G+   +    ++  +  + + G    
Sbjct: 184 PEVRFTCVSDGKT----LFRALDGTLLDRVAALLGKTVASALHPVDLATEGVRVTGLVAR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R  A+  Y +INGR ++D+ +   I  AY   +  GRYPVVVL +E+ P +VDVNV
Sbjct: 240 PDVSRSAASHLYTYINGRFIRDRVVQHAILQAYRNFLERGRYPVVVLFIEVSPGEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           HP K  +RFR   I+ + I  ++++ +        + S ++  +     Q     T   +
Sbjct: 300 HPTKHEVRFRQQGIVHDVIQGAVEETLRLTPWIRRSESPVAAPLAVPRPQQYVQGTGARQ 359

Query: 358 YAT---------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                               LF  +     +   P  D      +D        ++    
Sbjct: 360 VEEVRELLENYRPAVAPHRPLFAPQPAPQPDREPPLPDSGSRMLDDTAVRRHGGYFSSLA 419

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q + +YI+ Q    LVI+DQHAAHER+ FE+++  F + ++  Q LL PE ++L   
Sbjct: 420 VIGQYNASYILCQDGSDLVIIDQHAAHERVAFERLKTQFAAGRVEGQGLLFPETVELSHR 479

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E A++ EH  +L RLG   E FG     ++ IP +L+  +  +LLRD ++E+     + +
Sbjct: 480 ESAVVREHGGELGRLGFDLEDFGGTTWIVKGIPRLLAGTDYLRLLRDTLEELQSLGASRS 539

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           + D +E+IL  +AC+  +R    + + E+  L   M+    S+ C HGRP   +L L ++
Sbjct: 540 IADAVEDILTRVACHSVVRGEHPLTTGEIEALFAHMDATDFSTNCPHGRPVLQRLTLGEV 599

Query: 589 EKLFGR 594
           EK+F R
Sbjct: 600 EKMFKR 605


>gi|260587681|ref|ZP_05853594.1| DNA mismatch repair protein MutL [Blautia hansenii DSM 20583]
 gi|331084030|ref|ZP_08333137.1| hypothetical protein HMPREF0992_02061 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541946|gb|EEX22515.1| DNA mismatch repair protein MutL [Blautia hansenii DSM 20583]
 gi|330402392|gb|EGG81962.1| hypothetical protein HMPREF0992_02061 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 636

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 296/636 (46%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS+  I++IAAGE++ERP+  +KEL+EN++DA ++ +   I  GG SF ++TDNG 
Sbjct: 3   KIAVLSQNTIDKIAAGEVVERPASVVKELVENAIDAGATAITVEIKEGGISFIRVTDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A  RH TSKI  ++D   I + GFRGEAL SI AVS + ++++ P++  G 
Sbjct: 63  GIPKEQVPLAFLRHATSKITQAEDLLQITSLGFRGEALSSISAVSQMEVITKAPEDFMGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G +   +  V    GT + VR+LFF  PAR  FLK+   E   ++  + ++A+++
Sbjct: 123 RYVIEGGQEKVLEDVGAPNGTTMLVRNLFFNTPARKKFLKTAMTEAGYVSSYMEQLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +SF +      R      S N N  + I  + G D     + +  + + +++ G+ G 
Sbjct: 183 HNISFKYMVNGQLRLH---TSGNANLKDVIYGIYGRDITRELLPVQYEVSGLSVSGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  RGN N    +INGR V+ K ++  I  AY   +   +YP V L  +I    VDVNV
Sbjct: 240 PSIARGNRNFENYYINGRYVKSKLLMKAIEEAYKPYMMQHKYPFVCLQYDIHGEDVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------------SS 335
           HP K  +RF+N + I N     I  A+  K I                            
Sbjct: 300 HPTKMEVRFKNQSAIYNATYDLITDALAGKEIIPEVSLTPKPAVGEKQAQIKEEKIPVPE 359

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
              K  I+      AP    P  A   T ++ +       +   +      P   +    
Sbjct: 360 PFEKNRIAEEKPVYAPVGLRPASAEPKTESKAEPINVNEPIKPTEPEIQAKPEEQKKEAF 419

Query: 396 VEESEATH-----------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
            +E +A                           Q+   Y + +  +   I+DQHAAHE++
Sbjct: 420 PKEKQAVEKAEQLELFDNRLLSKEARIHHRIIGQLFDTYWLVEYDNKFYIIDQHAAHEKV 479

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           ++E+  ++F   +I SQ +  P +I L   E  L+  + E     G +   FG    +I 
Sbjct: 480 LYERFLKEFAKKEILSQMISPPSLISLNLQESNLLKANLEIFREFGFEISEFGGKEYSIH 539

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +PA +   ++ +L   I+D + +        D +   +AT AC  +++   ++   E +
Sbjct: 540 AVPANIYGVSVQELFIQILDSL-EQEHVSKTPDILAERIATAACKAAVKGNNRLSVKEAD 598

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            L+ E+    N   C HGRPT I +   ++EK F R
Sbjct: 599 ALIDELLSLENPYNCPHGRPTIISMTKYELEKKFKR 634


>gi|299769558|ref|YP_003731584.1| DNA mismatch repair ATPase [Acinetobacter sp. DR1]
 gi|298699646|gb|ADI90211.1| DNA mismatch repair ATPase [Acinetobacter sp. DR1]
          Length = 649

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 208/638 (32%), Positives = 344/638 (53%), Gaps = 45/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++ +AV RH TSKI  ++D   I + GFRGEAL SI AVS LTL S   ++  G 
Sbjct: 70  GIHSEDLALAVMRHATSKIKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGH 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQEVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G  F+ NA  ++ +S  + L G+ 
Sbjct: 190 THFDIRFVLEHNDNIRINLPIADSGELRFQRVQQLLGSQFVQNAYWMDAESISMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 250 GHPSDARAQADMQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------- 338
           NVHP K  IRF N   +  F+    ++ +++   +++ +                     
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLSQFQTASADLAQAMKVDEQSDYSVQPQPKYQ 369

Query: 339 -----KKMISSFHQDNAPKTHLPKYA--TSLTNTQEKLFLQENRLSTND----------- 380
                 +   + + D+ P+T        T    ++ +     ++    +           
Sbjct: 370 EQFSLHRANETLNADSEPQTQHAPTELLTDFNASRPQAVHYADQTPKYNGSAQLNNALKT 429

Query: 381 ---LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
               L     T+S + +    ++   + LGIA AQ+H  YI++Q T+GL+IVD HAAHER
Sbjct: 430 YLAPLRDQPATFSLNENIEPVTKFDEFPLGIAIAQLHGIYILAQNTEGLIIVDMHAAHER 489

Query: 438 LIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           ++ ++M+  ++  +  TSQ LL P++I +   +   + E    L RLG++ + +G   + 
Sbjct: 490 ILLQQMKNAWDKPEFWTSQQLLIPKVISISRMQAVRVEELKPQLERLGLEIDLYGDEQVI 549

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R +PAIL K +   L+ ++++++  +     L  + + +LA MAC+G++R+ R++   E
Sbjct: 550 VRGVPAILQKADFENLIPELLNDLDPNDEAQGLLQKRDELLAGMACHGAVRAHRQLSLSE 609

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR+ME+   +SQCNHGRPT+    LS ++KLF R
Sbjct: 610 MNALLRQMEQTEFASQCNHGRPTWRAFPLSQLDKLFAR 647


>gi|89100700|ref|ZP_01173556.1| DNA mismatch repair protein [Bacillus sp. NRRL B-14911]
 gi|89084575|gb|EAR63720.1| DNA mismatch repair protein [Bacillus sp. NRRL B-14911]
          Length = 640

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 183/642 (28%), Positives = 299/642 (46%), Gaps = 55/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + N+IAAGE++ERP+  +KEL+ENS+DA S+ +E      G +  +I DNG 
Sbjct: 3   KIVQLDDALSNKIAAGEVVERPASVVKELVENSIDAGSTIIEIDAEEAGLAKIRIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A QRH TSKI D  D   I T GFRGEALPSI +VS L L +       G 
Sbjct: 63  GIEEDDVMTAFQRHATSKIKDENDLFRIRTLGFRGEALPSIASVSRLELKTSTGDA--GT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K++     A   GT + + DLF+  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 121 RILIEGGKVAEFEKAASRKGTDITISDLFYNTPARLKYMKTIHTELGNITDVVNRLALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF          K+   + NGN  + ++ + G + +   + +   S +  + GY  +
Sbjct: 181 PEVSFRLVHNGR---KLLHTAGNGNVQQVLASIYGMNIVKKMIPVEASSLDFHVHGYIAL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  ++  I+  Y   +P+GRYP+V+L +++DP  VDVNV
Sbjct: 238 PEITRASRNYISTMINGRFIKNYPLVKAIQEGYHTLLPIGRYPIVLLNVQMDPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------FHQDNAPKT 353
           HP+K  +R      +   +  +I++    + +  +     +  +       F  D+ P+ 
Sbjct: 298 HPSKMEVRLSKEHELNELVAGTIKEVFKSQELIPAGFAPARAETPKSEQTFFELDHLPEK 357

Query: 354 HLPKYATSLTNTQEK-----------------------------------------LFLQ 372
            +     +     +                                           F  
Sbjct: 358 EMEYKEQAQNRQNDSRQAPSESGQPMFIKEEIAVRQHEEAPAFKPQDLLRTDSMAFPFKA 417

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
           E    +   L  D+    E     E S            Q+H  YI++Q   GL ++DQH
Sbjct: 418 EQPAESQAFLEDDEEEVIEGTAEPEASAVHRVPPLYPIGQMHGTYILAQNDRGLYVIDQH 477

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  R      +   Q +L P   +    E   I EH  +L ++GI  E FG 
Sbjct: 478 AAQERIKYEYFRDKVGQVESELQEMLVPLTFEYPADEYIKINEHIAELEKVGIFLEHFGQ 537

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +R  P    K    Q++ D+I++++       ++   E     M+C  SI++   +
Sbjct: 538 NTFIVRSHPQWFPKGEEQQIIEDMIEQVLSMKKAD-VKKLREEAAIMMSCKASIKANHHL 596

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ E+  LL  + K+ +   C HGRP  I     ++EK+F R
Sbjct: 597 RNDEIQALLDMLRKSSDPFTCPHGRPIIIHYSTYEMEKMFKR 638


>gi|153954200|ref|YP_001394965.1| hypothetical protein CKL_1575 [Clostridium kluyveri DSM 555]
 gi|219854808|ref|YP_002471930.1| hypothetical protein CKR_1465 [Clostridium kluyveri NBRC 12016]
 gi|146347081|gb|EDK33617.1| MutL [Clostridium kluyveri DSM 555]
 gi|219568532|dbj|BAH06516.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 609

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 195/609 (32%), Positives = 326/609 (53%), Gaps = 20/609 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L     N+IAAGE++E PS  +KEL+ENS+D+ +  +   I  GG+   ++ D+G 
Sbjct: 3   RINLLDMDTSNKIAAGEVVEGPSSVVKELLENSIDSGAKNITIEIEDGGQKSIRVIDDGV 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+  E++  A   H TSKIS  +D + I+T GFRGEAL SI AVSH+ L S+     N G
Sbjct: 63  GIHPEDVEKAFMPHATSKISTLEDLNKIYTMGFRGEALSSIAAVSHVILRSKVKDEFNYG 122

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+ISG  ++ ++    N GT V V+DLFF +PAR  FLKS   E +LI+D+I R+++A
Sbjct: 123 REISISGGVLNYIQDTGCNIGTTVLVKDLFFNVPARKKFLKSPGREGSLISDIINRLSLA 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P + F F        K      +G   + I  + G++   N + +   S+  ++ GY G
Sbjct: 183 NPNIVFKFFRDGK---KSLVTYGSGEVMDVIRCIYGKNIYENIIPIENHSDIASIYGYIG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
               +RG+ N   +F+N R V+DK I + +  A+   + + ++P  VL L++ P  VD+N
Sbjct: 240 NSEVSRGSRNNQSIFVNRRYVKDKSITAAVEKAFKSFLTVNKFPFFVLFLDLFPEFVDIN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  I+F +  +I  F+  +I +A+ +    +  +   +      ++ + +T+  + 
Sbjct: 300 VHPAKWEIKFSDSRMIFKFVFDTIHQALRESLKDSFKIDIIEDKILEKEEESVQTNKIQI 359

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED-------------NDPVEESEATHYQ 405
              L +   + +++E   +      +    Y                ND ++ES+ +   
Sbjct: 360 PIDLRSPIYESYIKEEYGNNEKQEDNISFEYGNTLEGGNTAEENVRLNDSLKESKISKLP 419

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                 Q +  YII++    L I+DQHAAHE+++FEK + +    ++ SQ L+T  +++L
Sbjct: 420 PFKMIGQFNNTYIIAEAASNLYIIDQHAAHEKILFEKYKSNIEKKEVISQILITSVVMEL 479

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              + A  +E+ +   + G   E FG N I +RE+P IL K +I  L  DIID + +  +
Sbjct: 480 TNDDYACYVENKDVFKKAGFNIELFGNNTINVREVPVILGKPDIKNLFTDIIDNLKNMGS 539

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
             T++ +  +I AT+AC  +I++   +  +EM  LL E+    +   C HGRPT +K  L
Sbjct: 540 GDTVEVKYLSI-ATLACRAAIKAKHNLSQVEMEHLLHELGFLEDPFTCPHGRPTIVKFTL 598

Query: 586 SDIEKLFGR 594
           +D+EK F R
Sbjct: 599 NDLEKKFKR 607


>gi|78223260|ref|YP_385007.1| DNA mismatch repair protein [Geobacter metallireducens GS-15]
 gi|78194515|gb|ABB32282.1| DNA mismatch repair protein MutL [Geobacter metallireducens GS-15]
          Length = 622

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 195/600 (32%), Positives = 317/600 (52%), Gaps = 16/600 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N+IAAGE++ERP+  +KEL+ENSLDA    +   I  GG+   ++TD+G 
Sbjct: 32  QIRILPENLTNKIAAGEVVERPASVVKELVENSLDAGCRDIIVEIEAGGRRLIRVTDDGS 91

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  ++++RH TSKI+  DD  ++ T GFRGEALPSI +VS  +L +R      G 
Sbjct: 92  GMSREDALLSLERHATSKIASDDDLFSLCTLGFRGEALPSIASVSRFSLATRQRGAIEGT 151

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G +I  V+   M  GT++ VR+LFF  PARL F+KS + E   + D++ R+AI+ 
Sbjct: 152 EIYAEGGRIKEVKACGMAEGTVITVRNLFFNTPARLKFMKSAETEAGHVGDLLTRLAISR 211

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT+       ++    + NG   ER++ ++G         L+     +T++G    
Sbjct: 212 PEVRFTYVNDGKTVFR----ALNGTMEERVAALLGRTIAGALYPLDSTVEGVTVRGLVAR 267

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R  A   Y FINGR ++D+ +   +  AY   +  GRYPVVVL +++    VDVNV
Sbjct: 268 PDVSRSAAGHLYTFINGRFIRDRVVQHAVLQAYRNFLERGRYPVVVLFIQVPAGDVDVNV 327

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR   ++ + I   I++A+       +  L K+  S+       +      +
Sbjct: 328 HPTKHEVRFRQQGVVHDVIQGVIEEAL-----RPTPWLRKESQSTVSSPPPERREPATSS 382

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA-----CAQIH 414
             +   +E L       + +       P      D   E        G         Q H
Sbjct: 383 ERVAEVRELLVNYRPSPAPSRPFFQPLPAVVPAPDQSAEEPDRPMDRGYFSRLAIIGQFH 442

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
            +YI+ Q    LVI+DQHAAHER+ FE+++  F +  +  Q LL P+ ++L   E A + 
Sbjct: 443 ASYILCQDGSDLVIIDQHAAHERVAFERLKAQFAAGGVEGQGLLFPDTLELSHREVAELR 502

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           EH E+L R+G   + FG     ++ +P +L+ K+  ++LRD ++E        ++ D +E
Sbjct: 503 EHGEELRRIGFDLDEFGGTTWVVKGVPRLLAGKDYLRILRDTLEEFQAVGANRSVADAVE 562

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            IL  +AC+  +R    + + ++  L  +M+    S+ C HGRP   +L L+++E++F R
Sbjct: 563 EILTRIACHSVVRGEHPLTTAQIEALFAQMDATDYSTNCPHGRPVLQRLTLAEVERMFKR 622


>gi|226939940|ref|YP_002795013.1| DNA mismatch repair protein [Laribacter hongkongensis HLHK9]
 gi|226714866|gb|ACO74004.1| MutL [Laribacter hongkongensis HLHK9]
          Length = 662

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 202/662 (30%), Positives = 328/662 (49%), Gaps = 73/662 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L + ++NQIAAGE++ERP+ A+KEL+ENSLDA +  ++  +AGGG    ++ D+G 
Sbjct: 3   RIQRLPDHLVNQIAAGEVVERPASALKELLENSLDAGARAIQIELAGGGIRLIRVADDGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++ +A+ RH TSKI   D+   + T GFRGE L SI AVS LTL SR       +
Sbjct: 63  GMPPDDLALALDRHATSKIHSLDELEAVATLGFRGEGLASIAAVSRLTLTSRTADAPHAS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I+     + ++ P A + GT V V DL+F  PAR  FLKSE  E      V+ R+A+A+
Sbjct: 123 EISAEDGVLGTLGPAARDTGTTVSVADLYFNTPARRKFLKSESTEYGHCAQVVERLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P   F              ++      ER+  ++G+DF+  A+ L  ++  + L+G+   
Sbjct: 183 PHTGFVLKHNGKTTLNRPAET----LAERVGALLGKDFLEVALPLEAEAGPLRLRGFVAA 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ ++      + F+NGR V+D+     +R AY + + L R P  VL LE+ P +VDVNV
Sbjct: 239 PSLSKTGREAQHAFVNGRFVRDRVFSHAVRQAYRDVLHLERQPCYVLFLELPPAEVDVNV 298

Query: 300 HPAKSYIRFRNPTI--------IRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           HP K  +RFR            +   +  S  ++  +   +T    ++       QD+ P
Sbjct: 299 HPTKIEVRFRESQAIHQFVFHAVNRVLAASRTQSAGQPEPATRIADTRLEPRLPEQDDTP 358

Query: 352 --------------KTHLPKYATSLTNTQEKL---------------------------- 369
                            +P+ + S      +                             
Sbjct: 359 LADAGTATVLPSPVAADMPRPSFSYPTAPPRPATHRVNDHGAGLDAYRLLFGDLPAAPAP 418

Query: 370 --------------FLQENRLSTNDLLPSDDPTYSEDNDPVE---ESEATHYQLGIACAQ 412
                         F   +R          D         V       A    LG A AQ
Sbjct: 419 RQTPATPPATAPLDFGAPSRAGAQAPAARADSAPLPAEASVPAAGHESAPVPPLGFAVAQ 478

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  Y+++Q   GLVIVD HAAHER+++E++++ F+   + SQ LL P   +    + AL
Sbjct: 479 LHGIYVLAQNARGLVIVDMHAAHERIVYERLKRAFDRDGLPSQPLLMPLAFEADALQQAL 538

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
             EH + L RLGI+ +     ++ I+ +PA+L++ +   L+R ++ ++     T  +  R
Sbjct: 539 AQEHADALARLGIQLDAPSRGSLTIKAVPAMLAQADAVALVRGVLADLEQHGATDAVDAR 598

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            + +LA+MAC+G++R+ R +   EMN LLR+ME    + QCNHGRPT+ +L +++++ LF
Sbjct: 599 RDALLASMACHGAVRAHRPLTLPEMNALLRDMEATERADQCNHGRPTWRELSMTELDALF 658

Query: 593 GR 594
            R
Sbjct: 659 LR 660


>gi|331091140|ref|ZP_08339982.1| hypothetical protein HMPREF9477_00625 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405362|gb|EGG84898.1| hypothetical protein HMPREF9477_00625 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 638

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 183/639 (28%), Positives = 307/639 (48%), Gaps = 48/639 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+EN++DA ++ V   I  GG SF +ITDN
Sbjct: 1   MPNIQVLDQITIDKIAAGEVIERPASIVKELVENAIDANATAVTVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  EE+ +A  RH TSKI    D + + + GFRGEAL SI A++ + ++++  +N+ 
Sbjct: 61  GCGIPKEEVSLAFLRHSTSKIRSEKDLATVSSLGFRGEALSSISAIAQVEVITKTKENDF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G    S+  V    GT   V  +F+  PAR  FLK+   E + + +++ R+A+
Sbjct: 121 GVKYTIEGGVEKSIEEVGAPDGTTFLVHQIFYNTPARRKFLKTPMTEASHVNELMVRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VS  F     ++      + NG   + I  V G +  NN +E+N    ++ + GY 
Sbjct: 181 SHPEVSIQFINNGQSKLH---TAGNGKVKDVIYHVFGREIANNLLEVNRDEGKMRVSGYI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    +INGR V+   I   I  AY +     +YP  VL   +D   +DV
Sbjct: 238 GKPLISRGNRNYENYYINGRYVKSNIIAKAIEDAYKDFTMQHKYPFTVLHFWLDGNDIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---------SSVLSKKMISSFHQD 348
           NVHP K  +RF +   + +F+ +++++ + +  +              + +K +   H +
Sbjct: 298 NVHPTKMELRFSHRQEVYDFVYRAVKETLIEPELIPRVEISKPTEEKNVPEKKVPEVHDE 357

Query: 349 NAPKTHLPKYATSLTNTQEKLFL-------------------------QENRLSTNDLLP 383
                 + +   S      +  +                         +E    +   + 
Sbjct: 358 AYFMKKMRERVQSYHRQASQAEVKDTTELHRGNLQIDRIKEAVTYNKNREREERSAQPVM 417

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIA--------CAQIHQNYIISQTTDGLVIVDQHAAH 435
                        E+      +L             Q+   Y + +  + L I+DQHAAH
Sbjct: 418 QPAQPDMSQEMKAEQLNFFEEKLLTKKAVQEYKLIGQVFDTYWLVEFQEQLYIIDQHAAH 477

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+++EK          TSQ L  P I++L   E  L+ EH +   ++G + E FG ++ 
Sbjct: 478 ERVLYEKTLHGMKDRTFTSQYLSPPIILNLSMQEARLLTEHMDLFSKIGFEIENFGGDSF 537

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
           A+R +P  L      +LL +++D + D  T+    D I   +A M+C  +++   K+ S 
Sbjct: 538 AVRAVPDNLFSIAKKELLMEMLDNLSDDITSAEAPDLIGEKIAAMSCKAAVKGNAKLSSA 597

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E+N L+ E+ +  N   C HGRPT I +   ++EK F R
Sbjct: 598 EVNALIGELLELENPYHCPHGRPTIIAMTKRELEKKFKR 636


>gi|315658412|ref|ZP_07911284.1| DNA mismatch repair protein HexB [Staphylococcus lugdunensis
           M23590]
 gi|315496741|gb|EFU85064.1| DNA mismatch repair protein HexB [Staphylococcus lugdunensis
           M23590]
          Length = 637

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 172/638 (26%), Positives = 310/638 (48%), Gaps = 50/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDADATEINVEVEESGISSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +   RH TSK+   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEADDLDLVFHRHATSKLHDDDDLFHIRTLGFRGEALASISSVAKVTLTTCT-DNEQGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I   +P     GT V+V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGQIVHKKPAKARKGTDVKVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F+  +      + N    +G   E ++ + G     + V +   +++  ++GY   
Sbjct: 182 PDIRFSLVSDGKIMLQTN---GSGKTNEVMADIYGMKVARDLVHITGDTSDYHIEGYVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFILNKAIVEGYHTLMMIGRYPICYINIKMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM-----ISSFHQDNAPKTH 354
           HP K  +R      +   I++ I++A + + +   +   +K      + +F Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVEKIREAFHDRILIPQNKWDEKPKKNKVLHTFEQQQMDFEK 358

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSD-----DPTYSEDNDP-------------- 395
             +   S   + E+   +  + +T+D    +     D TY++ N                
Sbjct: 359 QRQNTNSNDTSSERPSNELEQTTTSDDFNEETVQPVDSTYNKRNSNDDYFERQKEFLSEL 418

Query: 396 -------------------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                              V ++ +          Q+H  YII+Q  +G+ ++DQHAA E
Sbjct: 419 ENSTSSNSSLLEQEDIKGTVSKTPSRRVPYMEIVGQVHGTYIIAQNENGMFMIDQHAAQE 478

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R          Q LL P      + E  +I ++  +L ++G+  E FG +   
Sbjct: 479 RIKYEYFRDKIGEVTNEVQDLLIPMTFHFSKDEQIIINQYQSELDKVGVHLEHFGGSDYI 538

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +   P  L K ++  +++D+I+ +++      ++   E+    M+C  SI++   ++  E
Sbjct: 539 VNSYPVWLPKADVEDIIKDMIELVLEHKKID-IKKLREDAAIMMSCKKSIKANHYLKINE 597

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M  L+ ++ K  +   C HGRP  I     ++EKLF R
Sbjct: 598 MADLIDQLRKAEDPFTCPHGRPIIINFSNYELEKLFKR 635


>gi|30263774|ref|NP_846151.1| DNA mismatch repair protein [Bacillus anthracis str. Ames]
 gi|47529193|ref|YP_020542.1| DNA mismatch repair protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186618|ref|YP_029870.1| DNA mismatch repair protein [Bacillus anthracis str. Sterne]
 gi|65321094|ref|ZP_00394053.1| COG0323: DNA mismatch repair enzyme (predicted ATPase) [Bacillus
           anthracis str. A2012]
 gi|165872424|ref|ZP_02217059.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0488]
 gi|167639830|ref|ZP_02398099.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0193]
 gi|170706899|ref|ZP_02897357.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0389]
 gi|177652043|ref|ZP_02934589.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0174]
 gi|190568430|ref|ZP_03021337.1| DNA mismatch repair protein MutL [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813324|ref|YP_002813333.1| DNA mismatch repair protein MutL [Bacillus anthracis str. CDC 684]
 gi|229604532|ref|YP_002868010.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0248]
 gi|254735808|ref|ZP_05193514.1| DNA mismatch repair protein [Bacillus anthracis str. Western North
           America USA6153]
 gi|254751062|ref|ZP_05203101.1| DNA mismatch repair protein [Bacillus anthracis str. Vollum]
 gi|254759380|ref|ZP_05211405.1| DNA mismatch repair protein [Bacillus anthracis str. Australia 94]
 gi|81837840|sp|Q81WR4|MUTL_BACAN RecName: Full=DNA mismatch repair protein mutL
 gi|254766156|sp|C3P5H4|MUTL_BACAA RecName: Full=DNA mismatch repair protein mutL
 gi|254766157|sp|C3L823|MUTL_BACAC RecName: Full=DNA mismatch repair protein mutL
 gi|30258418|gb|AAP27637.1| DNA mismatch repair protein MutL [Bacillus anthracis str. Ames]
 gi|47504341|gb|AAT33017.1| DNA mismatch repair protein MutL [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180545|gb|AAT55921.1| DNA mismatch repair protein MutL [Bacillus anthracis str. Sterne]
 gi|164711862|gb|EDR17404.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0488]
 gi|167512231|gb|EDR87608.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0193]
 gi|170128317|gb|EDS97186.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0389]
 gi|172082412|gb|EDT67477.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0174]
 gi|190560434|gb|EDV14412.1| DNA mismatch repair protein MutL [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007230|gb|ACP16973.1| DNA mismatch repair protein MutL [Bacillus anthracis str. CDC 684]
 gi|229268940|gb|ACQ50577.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0248]
          Length = 626

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 184/627 (29%), Positives = 300/627 (47%), Gaps = 39/627 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLPK-----------------------YATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
            +  +P+                       +  S     E+   +E    +N+     + 
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPTQLWQPSTKPIIEEPIQEEKSWDSNEEGFELEE 418

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                     E             Q+H  YI +Q   GL ++DQHAA ER+ +E  R   
Sbjct: 419 LEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGLYMIDQHAAQERINYEYFRDKV 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
                  Q LL P  IDL   E   + E  E+L ++G+  E+FG  +  +R  P    K 
Sbjct: 479 GRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLFLEQFGHQSFIVRSHPTWFPKG 538

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
              +++ +++++++       ++   E     M+C  SI++ + + + ++  LL E+   
Sbjct: 539 QETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASIKANQYLTNDQIFALLEELRTT 597

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            N   C HGRP  +     ++EK+F R
Sbjct: 598 TNPYTCPHGRPILVHHSTYELEKMFKR 624


>gi|218132527|ref|ZP_03461331.1| hypothetical protein BACPEC_00386 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992637|gb|EEC58639.1| hypothetical protein BACPEC_00386 [Bacteroides pectinophilus ATCC
           43243]
          Length = 644

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 187/645 (28%), Positives = 303/645 (46%), Gaps = 54/645 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  IN+IAAGE+IERP+  +KEL EN++DA ++ V   I  GG SF +ITDNG
Sbjct: 1   MPIQILDQNTINKIAAGEVIERPASVVKELAENAIDAMATAVTIEIKDGGISFIRITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   EIPMA  RH TSKI   +D   + + GFRGEAL SI AV+ + L+++  +  TG
Sbjct: 61  CGIDKGEIPMAFLRHSTSKIKSVEDLMCVRSLGFRGEALSSIAAVAQIELITKTKEAFTG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  I G K  ++  +    GT   VR+LF+  P R  FLK+   E   ++ ++  +A +
Sbjct: 121 VRYVIEGGKEQNMEDIGAPDGTTFIVRNLFYNTPVRRKFLKTATTEAGYVSALVEHLAFS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+VSF F     N+    + S NG+  + I  V G D   N +E++ K+ +I + G+ G
Sbjct: 181 HPEVSFRFINNGQNKL---YTSGNGSLKDIIYHVNGRDIATNLLEVSAKTQDIQISGFIG 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  +RGN      FINGR ++   I   I   Y   I   +YP   L   I+   +DVN
Sbjct: 238 KPMISRGNRTYENYFINGRYIKSNIITRAIEEGYKGYIMQHQYPFTALHFTIEQSIIDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  +RF     + +F++ +I+  ++ + +     LS+      ++    +    K 
Sbjct: 298 VHPTKMELRFSQNEFVYDFVLNAIRNTLSGRELVPEVRLSRSENVPVNKTRPAEPFEVKR 357

Query: 359 ATS----------------------------LTNTQEKLFLQENRLST------------ 378
             +                            +++T     L+E+                
Sbjct: 358 MAAEAEKDKKNSTAGLTAALAATGHTLRQAYVSDTIRPKQLREDPAEYKTTAAIEPSAAP 417

Query: 379 ---------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                     + L        E    +   +       +   Q+   Y I Q  D + I+
Sbjct: 418 AARPPEAPVTETLQKSASPAPEQLSLITPDDTASIPKPVLVGQVFDTYWIIQFEDKMFIM 477

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAAHE++++E+      S  I +Q +  P I+ L   E  ++ ++ +   RLG + E 
Sbjct: 478 DQHAAHEKILYERTMHRLESGSIDTQIIAPPVILSLNMREKEVVSQNIDIFTRLGFEIES 537

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG N   +  +PA L   +  +LL DIID +++     +  + I   +A+M+C  +++  
Sbjct: 538 FGGNEYKVTGMPATLPSLDDRELLMDIIDSLMEEGGASSKPELITQRVASMSCKAAVKGN 597

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +M   E   L+ E+    N   C HGRPT I +   ++EK F R
Sbjct: 598 MRMSFAEAQNLVEELMNADNPYNCPHGRPTLISMSKYELEKKFKR 642


>gi|239826704|ref|YP_002949328.1| DNA mismatch repair protein [Geobacillus sp. WCH70]
 gi|259509936|sp|C5D9H6|MUTL_GEOSW RecName: Full=DNA mismatch repair protein mutL
 gi|239806997|gb|ACS24062.1| DNA mismatch repair protein MutL [Geobacillus sp. WCH70]
          Length = 619

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 183/620 (29%), Positives = 303/620 (48%), Gaps = 32/620 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  +   G +  ++ DNG 
Sbjct: 3   KIRKLDDQLSNKIAAGEVVERPASVVKELVENAVDANSTIIEIELEEAGLTKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSKI D  D   I T GFRGEALPSI +VS + + +       G 
Sbjct: 63  GMEEDDCLVAFERHATSKIKDEHDLFRIRTLGFRGEALPSIASVSEVEMKTSTGDGP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K+          GT + V +LFF  PARL ++K+   E   +TDV+ R+A+A+
Sbjct: 122 KVVLKGGKLVVHERTTSRKGTDITVSNLFFNTPARLKYMKTIHTELGHVTDVVNRLAMAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          ++ + S NG+    ++ + G D     + +  +S + T+QGY  +
Sbjct: 182 PDISFRLRHHGK---QLLYTSGNGDVRHVLAAIYGMDVAKKMIPIQAESLDFTVQGYISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  +   I   Y   +P+GRYP+V L + +DP  VDVNV
Sbjct: 239 PEVTRASRNYISTIVNGRYVRNIPLAKAIEAGYHTLLPIGRYPIVFLSIAMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------- 344
           HPAK  +RF     +   + Q+I++A+  + +    ++ +K                   
Sbjct: 299 HPAKLEVRFSKEAELNELVTQAIRQALQARTLIPEMMIKQKETPKPKAEQTAWTFEHVVK 358

Query: 345 -------FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD---DPTYSEDND 394
                   H D   +   PK ++ +   +E++      + +      D   +     ++ 
Sbjct: 359 EPFVSPLVHVDEPKQVDEPKQSSPVQEPKEEIPSFLPTVESKQNDVDDELVEMDEQTESS 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             +E             Q+H  YI++Q   GL I+DQHAA ER+ +E  R+         
Sbjct: 419 DEQEHVNDRLPPLYPIGQMHGTYILAQNERGLYIIDQHAAQERIKYEYFREKVGEVINEV 478

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P        E  LI  H E+L + G+  E FG N   +R  P+   K    +++ 
Sbjct: 479 QELLVPLTFHYPTDEYVLIDAHREELAKCGVFLEPFGHNTFIVRSHPSWFPKGEEAEIIE 538

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++I ++ID      ++   E     M+C  SI++   ++  E+  LL  + K  +   C 
Sbjct: 539 EMIQQVIDMKKVD-MKQLREKAAILMSCKRSIKANEYLRDDEIFALLESLRKTTDPFTCP 597

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP  I     ++EK+F R
Sbjct: 598 HGRPIIIHFSTYELEKMFKR 617


>gi|226224005|ref|YP_002758112.1| DNA mismatch repair protein [Listeria monocytogenes Clip81459]
 gi|259511145|sp|C1L2W0|MUTL_LISMC RecName: Full=DNA mismatch repair protein mutL
 gi|225876467|emb|CAS05176.1| DNA mismatch repair protein [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
          Length = 603

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 195/602 (32%), Positives = 305/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLEMETST-GEAKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      +V +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSVPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++  +K  +     +SKK       +    +   K   
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKETFHKLQLIPDGEISKKQKEDQKSEQIQISFEEKKPV 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-------GIACAQ 412
             T T   K  + E   S  D    DD           ES+A   +             Q
Sbjct: 361 KETPTLFSKPTIPEYVPSDEDAPREDDFILETMPSYEPESQAEQEEHTKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|254852550|ref|ZP_05241898.1| DNA mismatch repair protein mutL [Listeria monocytogenes FSL
           R2-503]
 gi|300765758|ref|ZP_07075734.1| DNA mismatch repair protein MutL [Listeria monocytogenes FSL
           N1-017]
 gi|258605861|gb|EEW18469.1| DNA mismatch repair protein mutL [Listeria monocytogenes FSL
           R2-503]
 gi|300513533|gb|EFK40604.1| DNA mismatch repair protein MutL [Listeria monocytogenes FSL
           N1-017]
          Length = 603

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 194/602 (32%), Positives = 304/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLEMETST-GEAKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      +V +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSVPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++  +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKETFHKLQLIPDGEISKKQKEDQKSEQIQMSFEENKPV 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-------GIACAQ 412
             T T   K  + E   S  D    DD           ES+A   +             Q
Sbjct: 361 KETPTLFSKPTIPEYVPSDEDAPREDDFILETMPSYEPESQAEQEEHTKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVTRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|254824536|ref|ZP_05229537.1| DNA mismatch repair protein mutL [Listeria monocytogenes FSL
           J1-194]
 gi|254932589|ref|ZP_05265948.1| DNA mismatch repair protein mutL [Listeria monocytogenes HPB2262]
 gi|293584148|gb|EFF96180.1| DNA mismatch repair protein mutL [Listeria monocytogenes HPB2262]
 gi|293593775|gb|EFG01536.1| DNA mismatch repair protein mutL [Listeria monocytogenes FSL
           J1-194]
 gi|328466113|gb|EGF37280.1| DNA mismatch repair protein [Listeria monocytogenes 1816]
 gi|332311845|gb|EGJ24940.1| DNA mismatch repair protein mutL [Listeria monocytogenes str. Scott
           A]
          Length = 603

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 194/602 (32%), Positives = 304/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLEMETST-GEAKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      +V +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSVPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++  +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKETFHKLQLIPDGEISKKQKEDQKSEQIQMSFEENKPV 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-------GIACAQ 412
             T T   K  + E   S  D    DD           ES+A   +             Q
Sbjct: 361 KETPTLFSKPTIPEYVPSDEDAPREDDFILETMPSYEPESQAEQEEHTKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|218782320|ref|YP_002433638.1| DNA mismatch repair protein MutL [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763704|gb|ACL06170.1| DNA mismatch repair protein MutL [Desulfatibacillum alkenivorans
           AK-01]
          Length = 643

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 192/643 (29%), Positives = 322/643 (50%), Gaps = 53/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            +R L E + N+IAAGE++ERPS  +KEL+ENSLDA+S+R+   +  GG+S  Q+ DNG 
Sbjct: 3   PVRILPEILTNKIAAGEVVERPSSVLKELVENSLDAKSTRIVVEVKKGGRSLIQVADNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  + ++R+ TSKI   DD  +I T GFRGEALPSIG+VS LTL++R   N  G 
Sbjct: 63  GMDKDDALLCLERYATSKIYTDDDLFSISTLGFRGEALPSIGSVSRLTLITRKKDNPAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G KI +V  +   PGT++ V DLF+ +PAR  FLK+   E   I D +  MA+ +
Sbjct: 123 KVVMQGGKIVNVSEIGAPPGTMITVADLFYNVPARRKFLKTVATEMGHIADTMSAMALGW 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+ +F          K+       +  +RI+ V+G+D     +  ++K  E++++G   +
Sbjct: 183 PETAFELIHNDR---KLFSWPAAQDPQDRIADVLGKDVAPGLIRFSQKEPEVSIEGCLAM 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F+R      Y+F+NGR V DK +   +   Y   +  G+YPV V+ L + P QVDVNV
Sbjct: 240 PEFSRTTKRGLYIFVNGRLVTDKLVTHALMEGYKGRLMKGKYPVAVVFLRVPPDQVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RF N  ++   +  +++++++    +      K  + +   ++  +    + +
Sbjct: 300 HPAKAEVRFVNGAMVHQALSSTVKESLDALDQTPWKSAPKPPVRTEANEDLLRQPPSQES 359

Query: 360 TS------------------------------------------------LTNTQEKLFL 371
            S                                                    +E    
Sbjct: 360 FSSFVKEEPSWIKAAAATPPQAPMYRPEPRFDAPREPRRPSSPSSHSAALSPQPREDSAF 419

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                   D        Y         +         A  Q    Y+I +++ GL+IVDQ
Sbjct: 420 SRPEPPVPDPGTVQPEPYKAPQSQAAAAPQDGVSDLKALGQFANAYVICRSSKGLLIVDQ 479

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAAHER++FE+ ++      I  Q LL PE  +L   E  ++     DL + GI  +RF 
Sbjct: 480 HAAHERILFEQFKKHMEVGGIEIQNLLIPETFELSHIEAEILERILPDLQKTGIDVDRFS 539

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
                ++  PA+L+  +I ++++++++++ ++       D ++  L  MAC+GS+R+ + 
Sbjct: 540 GRTFVVKAAPAMLANSDIGKIVKEMVEKVAEAGGNAHFFDALDECLIVMACHGSVRAHQS 599

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   EM+ LL+++E     SQC HGRPT++     D+E+ F R
Sbjct: 600 LSIQEMDALLKQLEACERPSQCPHGRPTWLLWTEYDLERAFKR 642


>gi|56963951|ref|YP_175682.1| DNA mismatch repair protein [Bacillus clausii KSM-K16]
 gi|81822107|sp|Q5WFY4|MUTL_BACSK RecName: Full=DNA mismatch repair protein mutL
 gi|56910194|dbj|BAD64721.1| DNA mismatch repair protein MutL [Bacillus clausii KSM-K16]
          Length = 654

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 186/655 (28%), Positives = 306/655 (46%), Gaps = 69/655 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L + + N+IAAGE++ERP+  +KEL+EN++DA SS++   I  GG S  +I DNG G
Sbjct: 4   IQQLDDALSNKIAAGEVVERPASIVKELVENAIDANSSQILVEIEEGGLSSIRIVDNGTG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A  RH TSKI    D   I T GFRGEALPSI +VS + + +       G Q
Sbjct: 64  IEPNELELAFSRHATSKIKTDRDLFTICTLGFRGEALPSIASVSRVNMQTSTGSA--GMQ 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G KI   +P     GT + V DLF+  PARL +LK+   E   +++V+ RMA+AYP
Sbjct: 122 VELEGGKIVHKQPSEARKGTTIVVTDLFYNTPARLKYLKTVLTEAGHVSEVMNRMALAYP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F + +      K    + NG+  + I+QV G       V +   S +  L+GY   P
Sbjct: 182 HIRFHYVSDGKTVLK---TAGNGDLRQVIAQVYGRKTAEKMVPITGSSLDYELRGYIAKP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N     +FINGR +++  +   I+  +   +P+GR+P+ VL LE+DP  +DVNVH
Sbjct: 239 ELTRANRQYMSIFINGRYIRNFKLAKAIQQGFHTKLPIGRFPIAVLKLEMDPTLIDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------- 335
           PAK  +R      +   I +SI+KA++++ +                             
Sbjct: 299 PAKLEVRLSKEEALSEMIAESIKKALSEETLIPEPKKENTAKTKSEQLSFSLAYELQPEK 358

Query: 336 -VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
             + + M          +    K +TS+ N+      QE  +       +  P  +E  +
Sbjct: 359 EHVRETMQQPRQLAADDQVDRKKESTSIGNSWSPSHQQEEEVEQGRGSNASIPPRNERVE 418

Query: 395 PVEESEATH-----------------------------------YQLGIACAQIHQNYII 419
              E +                                              Q+H  YI+
Sbjct: 419 TNTEEKYEQADRRTDESLPMEMEEEAAVVEPQLPLGNDAEAKGAMPPLYPVGQMHGTYIV 478

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q   G+ ++DQHAA ER+ +E   Q        +Q LL P  ++L   E  ++ E  E 
Sbjct: 479 AQNEQGMYLIDQHAAQERIKYEHFHQKLAEPLGQTQELLVPITLELTTRETLVVTESKEK 538

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  +G+  E FG N   +R  P    + +    +R+++++++D+    ++ +  E     
Sbjct: 539 LEAVGVFLEEFGKNTFVVRSHPTWFPQGDEESTIREMVEQLLDNKRI-SIGELREEAAIM 597

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M+C  +I++ R +++ EM +LL  + +      C HGRP  I     ++EK+F R
Sbjct: 598 MSCKAAIKANRHLRTDEMFQLLETLRRCQEPYTCPHGRPVVIHFSTYELEKMFKR 652


>gi|315282284|ref|ZP_07870726.1| DNA mismatch repair protein MutL [Listeria marthii FSL S4-120]
 gi|313614067|gb|EFR87769.1| DNA mismatch repair protein MutL [Listeria marthii FSL S4-120]
          Length = 603

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 192/603 (31%), Positives = 306/603 (50%), Gaps = 17/603 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL+L +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLSLETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNAP 351
           PAK  +R      +   I Q I+ A +K  +     +SKK            SF ++  P
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKAAFHKLQLIPDGEISKKQKEVQKSEQIQMSFEENKPP 360

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
           K     ++           +   R     L        +  N+  E+ +           
Sbjct: 361 KEIPTLFSKPTIPEYVPSDVDAPREDDFILETMPSYESAPQNEHTEQPKER-IPKMYPIG 419

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E  
Sbjct: 420 QMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYV 479

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++  
Sbjct: 480 RLEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHK 538

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
             E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+
Sbjct: 539 LREDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKM 598

Query: 592 FGR 594
           F R
Sbjct: 599 FKR 601


>gi|289550909|ref|YP_003471813.1| DNA mismatch repair protein MutL [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180441|gb|ADC87686.1| DNA mismatch repair protein MutL [Staphylococcus lugdunensis
           HKU09-01]
          Length = 637

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 171/638 (26%), Positives = 310/638 (48%), Gaps = 50/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDADATEINVEVEESGISSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +   RH TSK+   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEADDLNLVFHRHATSKLHDDDDLFHIRTLGFRGEALASISSVAKVTLTTCT-DNEQGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I   +P     GT V+V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGQIVYKKPAKARKGTDVKVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F+  +      + N    +G   E ++ + G     + V +   +++  ++GY   
Sbjct: 182 PDIRFSLVSDGKIMLQTN---GSGKTNEVMADIYGMKVAKDLVHITGDTSDYHIEGYVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFILNKAIVEGYHTLMMIGRYPICYINIKMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM-----ISSFHQDNAPKTH 354
           HP K  +R      +   I++ I++A + + +   +   +K      + +F Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVEKIREAFHDRILIPQNKWDEKPKKNKVLHTFEQQQMDFEK 358

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSD-----DPTYSEDNDP-------------- 395
             +   S   + E+   +  + +T+D    +     D TY++ N                
Sbjct: 359 QRQNTNSNDTSSERASNELEQTTTSDDFNEETVQPVDSTYNKRNSNDDYFERQKEFLSEL 418

Query: 396 -------------------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                              + ++ +          Q+H  YII+Q  +G+ ++DQHAA E
Sbjct: 419 ENSTSSNSSLLEQEDIKGTISKTPSRRVPYMEIVGQVHGTYIIAQNENGMFMIDQHAAQE 478

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R          Q LL P      + E  +I ++  +L ++G+  E FG +   
Sbjct: 479 RIKYEYFRDKIGEVTNEVQDLLIPMTFHFSKDEQIIINQYQSELDKVGVHLEHFGGSDYI 538

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +   P  L K ++  +++D+I+ +++      ++   E+    M+C  SI++   ++  E
Sbjct: 539 VNSYPVWLPKADVEDIIKDMIELVLEHKKID-IKKLREDAAIMMSCKKSIKANHYLKINE 597

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M  L+ ++ K  +   C HGRP  I     ++EKLF R
Sbjct: 598 MADLIDQLRKAEDPFTCPHGRPIIINFSNYELEKLFKR 635


>gi|289434686|ref|YP_003464558.1| DNA mismatch repair protein MutL [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170930|emb|CBH27472.1| DNA mismatch repair protein MutL [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 603

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/606 (32%), Positives = 313/606 (51%), Gaps = 17/606 (2%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I D
Sbjct: 1   MTKNIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHLTL +     +
Sbjct: 61  NGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLTLETST-GES 119

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A
Sbjct: 120 KGTTISLEGGKIIEQKSGHARKGTQIEVTQLFFNTPARLKYLKSLPTELGNITDILNRLA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +A+P +SF FS        +   S NG+  + I+ + G      ++ +  +S +  + GY
Sbjct: 180 LAHPNISFRFSHNGKP---LLQTSGNGDLRQVIAAIYGVSIAKKSIPVKAESLDFKISGY 236

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +P  NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VD
Sbjct: 237 AILPEINRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVD 296

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---ISSFHQDNAPKT 353
           VNVHPAK  +R      +   I Q I++A ++  +     +SKK      S     + + 
Sbjct: 297 VNVHPAKLEVRLSKEKELGQLISQMIKQAFHELQLIPDGEISKKQKEIQKSEQIQMSFEE 356

Query: 354 HLPKYATS---LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH--YQLGI 408
           + PK  T       +  +    +N +S  +    +        + +E+ E T        
Sbjct: 357 NKPKEETPTLFSKPSIPEYVPSDNDVSIENDFVFETAPVYTSEEHIEQKETTQERIPKMY 416

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    
Sbjct: 417 PIGQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPTD 476

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E   + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +S + +
Sbjct: 477 EYVRLEEQKVKLEEVGVFLENFGQNSYIIRAHPTWFPKDEEEEMLREIIDEAL-TSPSIS 535

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           +    E+    M+C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++
Sbjct: 536 IHKLREDTAIMMSCKKSIKANHYLTMKDMETLLDTLREASDPFTCPHGRPVIIQYSTYEL 595

Query: 589 EKLFGR 594
           EK+F R
Sbjct: 596 EKMFKR 601


>gi|148263827|ref|YP_001230533.1| DNA mismatch repair protein [Geobacter uraniireducens Rf4]
 gi|189030400|sp|A5GEV5|MUTL_GEOUR RecName: Full=DNA mismatch repair protein mutL
 gi|146397327|gb|ABQ25960.1| DNA mismatch repair protein MutL [Geobacter uraniireducens Rf4]
          Length = 602

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/603 (32%), Positives = 307/603 (50%), Gaps = 14/603 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + N+IAAGE++ERP+  +KEL+EN+LDA  S V   I  GG+   ++TD+G 
Sbjct: 4   RIKILPENLTNKIAAGEVVERPASVVKELVENALDAGCSEVVVEIEAGGRRLIKVTDSGC 63

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A++RH TSKI+ D     + T GFRGEALPSI +VS   L +R      G 
Sbjct: 64  GMTREDALLALERHATSKIASDSDLFGLATLGFRGEALPSIASVSRFALATREKGAIEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G ++  V+   M  GT++ VR+LFF  PARL F+KS   E   + D++ ++AI+ 
Sbjct: 124 EIYAEGGRVKEVKVCGMAEGTVISVRNLFFNTPARLKFMKSSDTEAGHVGDLLTKLAISR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F ++      ++    + + +  ER++ ++G     +   L+     + + G    
Sbjct: 184 PDVRFIYNNDGRTIFR----ALDADLRERVATLLGRALSADLYPLDFHDGPLGVTGLIAK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R  A+  Y +INGR ++DK +   +  AY   +  GRYPVVVL + +   +VDVNV
Sbjct: 240 PECSRSAASHLYTYINGRFIKDKVVQHAVLQAYRNFMERGRYPVVVLFITVPADEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR    + + I  +++  +            +   S      A  T + +  
Sbjct: 300 HPTKHEVRFREQGRVHDAIQAALESVLRATPWVRKQAAPQPFASPPPASEASATRVAEVR 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--------SEATHYQLGIACA 411
            +L     +  LQ++                       E            +Y       
Sbjct: 360 ETLARYSPEKHLQQSFTVPPAATFQRQQGAVSLPVAAREDDTASDKTESKGYYCSLSVIG 419

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q +  YI+ Q    LVI+DQHAAHER+ FEK++  F + ++ SQ LL PE I+L   E A
Sbjct: 420 QFNAAYILCQDGTDLVIIDQHAAHERVAFEKLKAQFAAAQVESQRLLFPETIELSFKEGA 479

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            + EH  +L RLG   E FG     +  +P +LS  +  + LRDI++E+     + T  D
Sbjct: 480 TLREHLAELGRLGFSLEEFGGATWLLNAVPRLLSGTDYLRTLRDILEELQTLGRSRTFAD 539

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            +E IL+ +AC+  +R    +   E++ L  +M+    SS C HGRP    L L +IE++
Sbjct: 540 ALEEILSRIACHSVVRGIHPLNGQEISALFAQMDATEFSSNCPHGRPVLRSLTLPEIERM 599

Query: 592 FGR 594
           F R
Sbjct: 600 FKR 602


>gi|239816439|ref|YP_002945349.1| DNA mismatch repair protein MutL [Variovorax paradoxus S110]
 gi|239803016|gb|ACS20083.1| DNA mismatch repair protein MutL [Variovorax paradoxus S110]
          Length = 622

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/612 (32%), Positives = 317/612 (51%), Gaps = 25/612 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L +++I+QIAAGE++ERP+  ++EL++N+LDA + +V   +A GG     + D+G 
Sbjct: 15  PIRELPDELISQIAAGEVVERPASVVRELLDNALDAGARQVTVRLASGGVRLISVEDDGQ 74

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+ +A++RH TSKI+   D   + T GFRGEAL +I A++ L+++SR    +   
Sbjct: 75  GIPREELTVALRRHATSKIASLNDLETVGTMGFRGEALAAINAIAELSILSRFAGADGAF 134

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RPVA   GT VEVR+LFF  PAR  FLK++  E     + +RR A+A 
Sbjct: 135 ALDGRTGEL---RPVARAVGTTVEVRELFFATPARRKFLKTDATELAHCIEAVRRHALAR 191

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F+         +           +R++  + +DF+  +V +      + + G  GI
Sbjct: 192 PEVGFSVWHDGKLMEQWRAA---DRREQRLADALSDDFVAQSVAVEYMGGAVRVAGRAGI 248

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R  A+Q + ++NGR V+DK +   +R+AY + +   R PV  L LEIDP +VDVNV
Sbjct: 249 PDAARSRADQQFFYVNGRFVRDKVLSHAVRSAYEDVLHGQRQPVYALYLEIDPSRVDVNV 308

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKG------ISTSSVLSKKMISSFHQDNAPKT 353
           HP K  +RFR+   +   +  +I+ A+           +      K  + +     A   
Sbjct: 309 HPTKIEVRFRDGREVHQAVRHAIENALAAPRAGDAVTPAAPQPFFKPNVPASGATWAQPG 368

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP-----------TYSEDNDPVEESEAT 402
                A       E L+ Q    S   L P+                         +   
Sbjct: 369 INFVAAERGAGDFEALWPQRTAESGPSLWPAAGAAPAAFRAPAGLPAESPGADTPATSEH 428

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            + LG A AQ+   YI+++ + GL++VD HAAHER+++E+++   +   ITSQ LL P  
Sbjct: 429 AWPLGRALAQLQGIYILAENSQGLIVVDMHAAHERIVYERLKTQLDGAAITSQPLLIPAT 488

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                 E A        L  LG++   F P  +A+R +P  L+  +  +L R ++ E+  
Sbjct: 489 FAATPQEVATAEACAAVLPTLGLEITPFSPRTLAVRAVPGTLADGDPVELARSVLAELAQ 548

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              +  +Q     +L+TMAC+G++R+ R++   EMN LLR+ME    S QCNHGRPT+ +
Sbjct: 549 HDASTVVQRAQNELLSTMACHGAVRANRRLTIDEMNALLRQMEATERSDQCNHGRPTWRQ 608

Query: 583 LKLSDIEKLFGR 594
           L + +++ LF R
Sbjct: 609 LSIRELDALFMR 620


>gi|238651126|ref|YP_002916984.1| DNA mismatch repair protein [Rickettsia peacockii str. Rustic]
 gi|259511150|sp|C4K2Y5|MUTL_RICPU RecName: Full=DNA mismatch repair protein mutL
 gi|238625224|gb|ACR47930.1| DNA mismatch repair protein [Rickettsia peacockii str. Rustic]
          Length = 610

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/610 (40%), Positives = 372/610 (60%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NI+TFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKFDESDFLNINTFGFRGEALPSIAAISKMLITSKKRDADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E      V++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVGVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+S + +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISLSLTHDGKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+I+P+ VDV
Sbjct: 241 SSPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPICAIFLQINPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKT 353
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F        +P +
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNKQSPVS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDNDPVEESEATHYQL 406
            +    +   + +       N +  N       D L         +N    E +      
Sbjct: 361 KVINVNSKSADYRPTTHSTLNTVPQNHVCQKLIDTLSHAKIEQEVENHIEHEQQTRKQYK 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  YIISQT D +VI DQHAAHERL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYIISQTEDSIVITDQHAAHERLGYEKIKDYLKTEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D  
Sbjct: 481 PNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+LK
Sbjct: 541 KNIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPLSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|219848834|ref|YP_002463267.1| DNA mismatch repair protein MutL [Chloroflexus aggregans DSM 9485]
 gi|219543093|gb|ACL24831.1| DNA mismatch repair protein MutL [Chloroflexus aggregans DSM 9485]
          Length = 612

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 303/615 (49%), Gaps = 26/615 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L E I  QIAAGE++ERP+   KEL+EN+LDA + R+   + GGG    ++ D+G
Sbjct: 1   MPIRLLDETIAAQIAAGEVVERPASVAKELVENALDAGARRIVVEVRGGGLREIRVQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+++EE+ +A  RH TSK+   DD   I T GFRGEALPSI +V+ +  ++R      G
Sbjct: 61  CGISAEEVELAFARHATSKLHSADDLWAIRTLGFRGEALPSIASVAQVICVTRVADAELG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G ++ S  P     GT + VR+LF+  P R  +L+SE  ET  I+ ++++ A+A
Sbjct: 121 VELRIAGGEVQSRLPCGCPAGTTITVRNLFYNTPVRREYLRSEATETGAISAIVQQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN----EITLQ 234
           YP+VSF+        ++    + +G+    + ++ G       + +  +       + + 
Sbjct: 181 YPEVSFSLVIDGRLAFQ---TTGDGDLRAVVVELYGLAVGRALLPVQAEVGDGELWVAVN 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDK-FILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           G    P   R + +    F N R +Q +  + + +  AY   +  GR+P+ ++ L + P 
Sbjct: 238 GLISPPDLTRSSRSYLSFFANRRALQPRGALAAVVENAYHTMLMKGRFPIAIIDLRVHPA 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------ 341
            +DVNVHP KS ++FR P  + + + Q+I+ A+ K                         
Sbjct: 298 AIDVNVHPTKSEVKFRYPAHVHSVLGQAIRDALIKGSDIPVWEAPDPATAQRRFELRRLG 357

Query: 342 --ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
              +S                +  +    +   E  L  + +      T     D    +
Sbjct: 358 QEQASSPATWGVGAQAWDRERAHWDVGTPVSRSEPSLLVSPVAVPTSNTAVPTPDASFAT 417

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
            ++         Q+   YI+++  +G+ ++DQHAAHER+ +EK+   +    + SQ LL 
Sbjct: 418 SSSALPPLRVVGQVGLTYIVAEAPEGMYLIDQHAAHERITYEKLMNQYAQRAVESQQLLI 477

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+ ++L      L++ + E L   G   E +G   + +R IPA L    + Q L ++ + 
Sbjct: 478 PQAVELSPEASTLLVGNAEKLAEWGFALEPWGTG-VLVRAIPATLPPDELTQALHEVAER 536

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           +     +  L+   E +L T+AC+ S+R+G+ +   EM  LLR++E+  +   C HGRPT
Sbjct: 537 LAGRGGSSPLE-WREAMLITLACHTSVRAGQPLSHDEMRHLLRQLEQCVSPRTCPHGRPT 595

Query: 580 FIKLKLSDIEKLFGR 594
            I +  + +E+ FGR
Sbjct: 596 MILMTPAQLERQFGR 610


>gi|308272776|emb|CBX29380.1| DNA mismatch repair protein mutL [uncultured Desulfobacterium sp.]
          Length = 613

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 198/606 (32%), Positives = 335/606 (55%), Gaps = 15/606 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIR LSE I N+IAAGEI+ERP+  +KEL+EN+LDA+S+R+   I  GGKS  +++DNG
Sbjct: 9   MKIRILSENISNKIAAGEIVERPASVVKELVENALDAKSTRILVEIEKGGKSLIRVSDNG 68

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  ++  ++++R+ TSKI   +D  +I+TFGFRGEALPSI +VS  +L+++  ++ TG
Sbjct: 69  TGMVKDDALLSIERYATSKIETDEDLFSINTFGFRGEALPSIASVSRFSLVTKGNESQTG 128

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I I G KI SV       GT++ V+D+FF  PAR  FLKS   E   I DVI  MA+ 
Sbjct: 129 IEIKIEGGKILSVTDKGSPEGTMISVKDIFFNTPARRKFLKSVDTEMGHIADVISTMALV 188

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + F  +      Y +       +   R  +++G+D  ++   L      I++ G+  
Sbjct: 189 NSNIQFNLTHNGRTVYNLLSSP---DSAVRTEEILGKDTKSSLYRLGFSKETISVSGWIS 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R  +   Y+++NGR V DK +   +  AY   +  G +PV V+L+ +   +VDVN
Sbjct: 246 SPVVKRHTSRGIYIYVNGRFVHDKIVQHALLEAYTSRLIKGEFPVAVVLINLPFNEVDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VHPAK  +RF  PT +   +  ++++ +  +     +++   +K+  +   D +      
Sbjct: 306 VHPAKHEVRFSEPTRVHEAVKAAVKETLDLSDPFKKSAADYVQKVQHNKSVDISEHQVAY 365

Query: 357 KYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGI 408
           K A      Q ++         ++ L    +    + T  + +  ++E+  E   ++  I
Sbjct: 366 KPAVKANPVQSEIVTDLPLKKVQSDLPLKKVQSYTEKTNPKQDSHIQENLWEKKQFKDLI 425

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q+H  YII ++ +G+ ++DQHAAHER+++E+++   ++ +   Q LL PE+I+    
Sbjct: 426 VLGQLHGTYIICESVEGIFLIDQHAAHERILYEQIKAREDAYRYAIQNLLVPEVIEFGYR 485

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E  +  +   D  R G   E FG NA A++ +PA LS K++  ++ + I+ +I++     
Sbjct: 486 EAGVFEKLLPDFQRAGFDVEPFGGNAFAVKSVPAFLSGKDVKSIITETIENLIETGFVPG 545

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
            +   + +L  +AC+G+IR+ +K+   EM  LL +++     S C HGRPT+IK  + ++
Sbjct: 546 FEKASDELLKLIACHGAIRANQKLSDKEMITLLSQLDDCKMPSNCPHGRPTWIKFSIKEL 605

Query: 589 EKLFGR 594
           EK F R
Sbjct: 606 EKFFKR 611


>gi|328675701|gb|AEB28376.1| DNA mismatch repair protein MutL [Francisella cf. novicida 3523]
          Length = 600

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/596 (33%), Positives = 319/596 (53%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIENS+DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENSIDAGATQITIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+        
Sbjct: 70  GIAQQDLKLALAAHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKYQDAKDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P A   GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNYTREV---VPAAHVTGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++ ++  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLLAEDVQLKYNRVLDLYSREFIENAIYVDKQVDDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR   +    +INGR ++DK +   I+ AY + +   RYP  +L L ID  +VDVNV
Sbjct: 247 PRFNRARPDMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLNIDYHEVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  ++ KAI        S    + ++S  +  +    L    
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGTVNKAITTNADIKISS--DQQVTSQERQTSNNNPLNIGN 364

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            SL    E     E+  S N      +    + N      ++    LG A  QIH  YI+
Sbjct: 365 MSLDINIED--EAESDTSVNLFNKYFEKQTIQQNQINISEQSKSSGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A I E+ E
Sbjct: 423 SQVEDGVVLVDMHAAHERILYEEMKKTWHADTDKFKQNLLVPLTCQLSSNIVATIEENLE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ ++  E+  SS T +++  + +ILA
Sbjct: 483 VFEKLGFEISIVADDAILVRATPIYVKNKDIQDLISNVATELSSSSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSISEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|170732087|ref|YP_001764034.1| DNA mismatch repair protein [Burkholderia cenocepacia MC0-3]
 gi|169815329|gb|ACA89912.1| DNA mismatch repair protein MutL [Burkholderia cenocepacia MC0-3]
          Length = 667

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/650 (29%), Positives = 324/650 (49%), Gaps = 65/650 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELALALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADAAHAMK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A + GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGSIGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDSFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNP----TIIRNFIIQSIQKA---------------INKKGISTSSVLSKKM 341
           P+K  +RFR+       + + + +++ +                +       +S L   +
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAHLEPAPRGPASFLDTPL 375

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT------------- 388
                            + S +++    ++++ R++   L  +                 
Sbjct: 376 GQGTSHTTGGTGGSSFSSPSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGA 435

Query: 389 ------------------------YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                                         P+         LG A  QIH  Y+++Q   
Sbjct: 436 GTPEGTTLIARDAADSTDAPVAPLPGFAAAPLAAGAHDEQPLGFALGQIHGIYVLAQNAY 495

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GLVIVD HAAHER+++E+ +       +  Q+LL P  +     E   + E  + L  LG
Sbjct: 496 GLVIVDMHAAHERILYEQFKNALADRTVAVQSLLLPISMTATPVEIGTVEEERDTLESLG 555

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
                  P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ 
Sbjct: 556 FDLAVLSPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHH 615

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 AVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 665


>gi|107021841|ref|YP_620168.1| DNA mismatch repair protein [Burkholderia cenocepacia AU 1054]
 gi|116688788|ref|YP_834411.1| DNA mismatch repair protein [Burkholderia cenocepacia HI2424]
 gi|105892030|gb|ABF75195.1| DNA mismatch repair protein MutL [Burkholderia cenocepacia AU 1054]
 gi|116646877|gb|ABK07518.1| DNA mismatch repair protein MutL [Burkholderia cenocepacia HI2424]
          Length = 667

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 193/650 (29%), Positives = 325/650 (50%), Gaps = 65/650 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELALALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADAAHAMK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A + GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGSIGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDSFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNP----TIIRNFIIQSIQKA---------------INKKGISTSSVLSKKM 341
           P+K  +RFR+       + + + +++ +                +       +S L   +
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAHLEPAPRGPASFLDTPL 375

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED--------- 392
                            + S +++    ++++ R++   L  +      +          
Sbjct: 376 GQGTSHTTGGTGGSGFSSPSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGA 435

Query: 393 ----------------------------NDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                                         P+         LG A  QIH  Y+++Q   
Sbjct: 436 GTPDGTTLIARDAADSTDAPAAPLQGFAASPLAAGAHDEQPLGFALGQIHGIYVLAQNAY 495

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GLVIVD HAAHER+++E+ +       +  Q+LL P  +     E   + E  + L  LG
Sbjct: 496 GLVIVDMHAAHERILYEQFKSALADRTVAVQSLLLPISMTATPVEIGTVEEERDTLESLG 555

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
                  P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ 
Sbjct: 556 FDLAVLSPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHH 615

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 AVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 665


>gi|124267220|ref|YP_001021224.1| DNA mismatch repair protein MutL [Methylibium petroleiphilum PM1]
 gi|124259995|gb|ABM94989.1| DNA mismatch repair protein MutL [Methylibium petroleiphilum PM1]
          Length = 604

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 201/599 (33%), Positives = 327/599 (54%), Gaps = 15/599 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L +++++QIAAGE++ERP+  ++EL++N+LDA +  +   +  GG     + D+G 
Sbjct: 13  QIRELPDELVSQIAAGEVVERPASVVRELVDNALDAGAREIVVKLMAGGVRAILVEDDGA 72

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ + E+P+A++RH TSKI+  D+  N+ T GFRGEAL +I AVS L++ SR        
Sbjct: 73  GIPASELPLALKRHATSKIASLDELENVSTMGFRGEALAAIAAVSELSIASRHADAPHAQ 132

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     ++    P A   GT VEVR+LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 133 RLDARSGEL---VPAARGVGTSVEVRELFFSTPARRKFLKTDATELAHCLEAVRRHALAR 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F           +  Q       +RI   +GEDF+ ++ E+  +   + + G  G+
Sbjct: 190 PDVGFAVWHEGK----LLAQWRRAPLEQRIRDALGEDFMAHSREVTAQPTGLRISGRIGL 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R  A++ YV++NGR V+D+ I   +RTAYA+ +  GR P  VL +EI P +VDVNV
Sbjct: 246 PDAARARADEQYVYVNGRHVRDRLISHGLRTAYADVLHGGRQPSYVLFIEIAPSRVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           HP K  +RFR+   +   +  + + A+   +   T   L +    +     A +  L   
Sbjct: 306 HPTKIEVRFRDGREVHQAVRHAAEDALALPRADETRPALFEPTRPAVWSPLAEQAGLGLG 365

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLP---SDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           A    + +   +   +  S + LL    + D        P+       + LG A AQ+  
Sbjct: 366 A--GVSERRPAWPAPSGESVDLLLHLDAAPDGGAPSPFLPLTLQSGDDWPLGRALAQLGG 423

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+++  DGLVIVD HAAHER+++E+++      +I SQ LL P I      E A    
Sbjct: 424 VYILAENRDGLVIVDMHAAHERVVYERLKAGLAGARIESQPLLIPAIFPATAAEVATAEA 483

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E L RLG+       N +A+R  PA L+  ++  L R ++ E+     ++ ++     
Sbjct: 484 QVETLARLGLDLTVLSSNVLALRSHPAALAGGDMVALARSVLAELARYDASHAIERAQHE 543

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +L++MAC+G++R+ R++   EMN LLR+ME+   + QCNHGRPT+ +L L ++++ F R
Sbjct: 544 LLSSMACHGAVRANRRLSVEEMNALLRDMERTERADQCNHGRPTWRQLTLKELDQRFLR 602


>gi|160871897|ref|ZP_02062029.1| DNA mismatch repair protein MutL [Rickettsiella grylli]
 gi|159120696|gb|EDP46034.1| DNA mismatch repair protein MutL [Rickettsiella grylli]
          Length = 615

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 209/610 (34%), Positives = 333/610 (54%), Gaps = 17/610 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L   + NQIAAGE+IERP+  +KELIENSLDA+S  ++  I  GG    ++ D+G 
Sbjct: 4   RIQRLPHHLANQIAAGEVIERPASIVKELIENSLDADSQHIDIDILKGGIQRIRVRDDGR 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A+ RH TSK++  +D   I T GFRGEAL SI A++ L L S     + G 
Sbjct: 64  GIHKEDLILALDRHATSKMNTLNDLERIKTLGFRGEALASISAIARLRLSSSIETTHGGW 123

Query: 120 QIAISGE--KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            I       +I+   P     GT VE++DLFF  PAR  FLKSEQ E   I +++ R+++
Sbjct: 124 MITSDYHHDRIADPVPCPHTQGTCVEIQDLFFNTPARRKFLKSEQTEFGHIENIVTRLSL 183

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++    FT    K   Y +          +RI+ +    FI NA+ ++ ++ ++ L G+ 
Sbjct: 184 SHFSTRFTLHHNKQRIYHLLPAPDEITKEKRIATLCHPSFIENAIYIDMQATDLHLWGWI 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +PTF+R   +  Y ++N R ++DK I   I+ AY + +  GR+P  +L LEIDP  VDV
Sbjct: 244 SLPTFSRSQPDLHYFYVNQRIIKDKLINHAIKHAYQDVLYKGRHPGFILFLEIDPSAVDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS-----------FH 346
           N HPAK  +RFR   ++ +F+ QS+  A+      +        + S             
Sbjct: 304 NAHPAKYEVRFRESRLVYDFVKQSLLNALANTYPQSPPCSDPLPVQSTELSQKIVDRPMP 363

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL--LPSDDPTYSEDNDPVEESEATHY 404
             ++ + HLP   T          + +  +   D   L   +           E      
Sbjct: 364 PPHSQQNHLPLQVTKNDVPLATKTVHDASVMVQDAQKLFIAEEPTVSQVKKSNEKPIADP 423

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A AQ+   YI+++ T GL+IVD HAAHER+++E+++Q+  S  + +Q LL P  + 
Sbjct: 424 PLGFALAQLRGIYILAENTQGLIIVDIHAAHERILYERLKQNLQSAGLKTQVLLLPITLT 483

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   + +  + L + G + E  GP  + IR+IP +LS  NI QL+ D+++++    
Sbjct: 484 LTREELQFVEQCKQLLTQFGFEIETLGPETVVIRQIPELLSDTNIEQLIHDVLNDLTQHD 543

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +  L  +I  +L+++AC+ +IR+ R M   EMN+LLR+ME+   S+QCNHGRPT+ +  
Sbjct: 544 ESQQLSVKINELLSSIACHSAIRAHRTMTLPEMNQLLRDMEQTLRSNQCNHGRPTWKQWS 603

Query: 585 LSDIEKLFGR 594
           +S+I++LF R
Sbjct: 604 ISEIDRLFYR 613


>gi|91789069|ref|YP_550021.1| DNA mismatch repair protein MutL [Polaromonas sp. JS666]
 gi|91698294|gb|ABE45123.1| DNA mismatch repair protein MutL [Polaromonas sp. JS666]
          Length = 660

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 197/635 (31%), Positives = 327/635 (51%), Gaps = 42/635 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L +++I+QIAAGE++ERP+  ++EL++N+LDA +++V   +  GG     + D+G 
Sbjct: 24  PIRELPDELISQIAAGEVVERPASVVRELVDNALDAGATQVTVRLLAGGVRLILVEDDGQ 83

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG- 118
           G+  EE+P+A++RH TSKI+   D   + T GFRGEAL +I +++ ++L+SR     +G 
Sbjct: 84  GIPREELPVALRRHATSKIASLQDLEAVGTMGFRGEALAAINSIADMSLLSRTLDGASGN 143

Query: 119 ----AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
               A       +   ++P A + GT VEVR+LF+  PAR  FLK++  E     + +RR
Sbjct: 144 AGEAAHAWQLDGRTGELKPAARSRGTSVEVRELFYATPARRKFLKTDATELAHCIEAVRR 203

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKS---- 228
            A+  P V F          +             +R++ V+G DF+  +V +  +S    
Sbjct: 204 HALVRPDVGFAIWHEGKLVEQWRACPGEPAAAHTQRLADVLGSDFVEQSVAVYYESAARR 263

Query: 229 ----NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
                 + + G  GIP   R  A+Q + ++NGR V+DK +    R+AY + +   R PV 
Sbjct: 264 TDGLPAVRVWGRAGIPDAARSRADQQFAYVNGRYVRDKVLTHAARSAYEDVLHGHRQPVY 323

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-----------GIST 333
            L +E+DP +VDVNVHP K  +RFR+   +   +  + + A+                 T
Sbjct: 324 ALYVEMDPARVDVNVHPTKIEVRFRDSREVHQAVRHATENALATPRSAAAASPDGAAADT 383

Query: 334 SSVLSKKMISSFHQDNAPKTHLPK---------YATSLTNTQEKLFLQENRLSTNDLLPS 384
           ++ L     S+ +     KT             +  S       + +Q  R + +D    
Sbjct: 384 AAPLISSEFSASNTGFTQKTWGQPTINFAANGGHRASDFEAMWPVPVQPGRPAASDGFSP 443

Query: 385 DD--PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
               P  +    P +      + LG A AQ+   Y++++   GLVIVD HAAHER+++E+
Sbjct: 444 SPSLPQGASSAGPADSLPPGDWPLGRAIAQLQGIYVLAENAQGLVIVDMHAAHERIVYER 503

Query: 443 MRQDFNSTK---ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           ++   +S++   I SQ LL P        E A      E L  LG++   F P  +A+R 
Sbjct: 504 LKSQMDSSEGAHIASQPLLIPATFAASPQEVATAEACIETLATLGLEITPFSPRTLAVRA 563

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P  L++ +  +L R ++ E+     +  +Q     +L+TMAC+G++R+ RK+   EMN 
Sbjct: 564 VPTSLAQGDAVELARSVLAELAQHDASTVIQRAQNELLSTMACHGAVRANRKLTIDEMNA 623

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LLR+ME    S QCNHGRPT+ ++ + +++ LF R
Sbjct: 624 LLRQMEATERSDQCNHGRPTWRQVSIRELDALFLR 658


>gi|262375385|ref|ZP_06068618.1| DNA mismatch repair ATPase [Acinetobacter lwoffii SH145]
 gi|262309639|gb|EEY90769.1| DNA mismatch repair ATPase [Acinetobacter lwoffii SH145]
          Length = 655

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 210/645 (32%), Positives = 340/645 (52%), Gaps = 52/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   + NQIAAGE+IERP+  +KEL+ENS+DA ++ +   +  GG +  +I DNG 
Sbjct: 9   RIRALDPALANQIAAGEVIERPASVVKELLENSIDAGATELIIRVEQGGSTLIEIIDNGR 68

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+AV RH TSKI  +D+   I + GFRGEAL SI AVS LT++S       G 
Sbjct: 69  GIHHEDLPLAVMRHATSKIQSADELYAISSLGFRGEALASIAAVSRLTMISSQSDEGIGY 128

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        ++ VA + GT + V+DLFF +PAR  FLK    E   I +++RRMA+
Sbjct: 129 QVEVNGTAFDHQEIQAVAASKGTHIRVQDLFFNVPARRKFLKKPGTEFGHIEEIVRRMAL 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F     +S +  +    +     +R+ Q++G  F  NA  ++  S  + L G+ 
Sbjct: 189 THFDIRFVLEHNESIKLNLPVADSGALRFQRVQQLLGRQFTENAYWIDADSINMRLSGWL 248

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  VDV
Sbjct: 249 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHAAYLLFLEVDPENVDV 308

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  IRF N   +  F+    ++ + +   +T+ +             AP+    +
Sbjct: 309 NVHPTKHEIRFLNQREVHEFVRHYAKETLAQFQTATADLAEAMKQDEQPGLTAPQPRYQE 368

Query: 358 YAT--SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT------------- 402
             +     ++Q ++    + LS N+         S     V  S+               
Sbjct: 369 QFSLHQTAHSQPQVVRTTSALSENETSDVLTDFASSGPQTVHYSQDYRKSYSGSQQLNNA 428

Query: 403 --------------------------------HYQLGIACAQIHQNYIISQTTDGLVIVD 430
                                            + LGIA AQ+H  YI++Q T+GL+IVD
Sbjct: 429 LQSYLAPLRESSETEIFSPEQSFQTHVNTKVDEHPLGIAIAQLHGIYILAQNTEGLIIVD 488

Query: 431 QHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
            HAAHER++ ++M+  ++  +  TSQ LL P+++++   +   + E  E L RLG++ ++
Sbjct: 489 MHAAHERIVLQQMKSAWDKPEFWTSQQLLIPKVVNISRMQAMRVEELKEQLARLGLEIDQ 548

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G   I +R +PAIL K +   L+ ++++++       +L  + + ILA MAC+G++R+ 
Sbjct: 549 YGDEQIIVRGVPAILHKADFDALIPELLNDLDPGDQAQSLLQKRDQILAGMACHGAVRAH 608

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R +   EMN LLR+ME+   +SQCNHGRPT+    L+ ++KLF R
Sbjct: 609 RILSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLAQLDKLFAR 653


>gi|116872836|ref|YP_849617.1| DNA mismatch repair protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123458462|sp|A0AIK6|MUTL_LISW6 RecName: Full=DNA mismatch repair protein mutL
 gi|116741714|emb|CAK20838.1| DNA mismatch repair protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 603

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 195/602 (32%), Positives = 309/602 (51%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL++ +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLSMETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIMEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFNISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP----KTHLP 356
           PAK  +R      +   I Q I++A ++  +     +SKK       +       +  LP
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHQLQLIPDGEVSKKQKEQQKSEQIQMSFEENKLP 360

Query: 357 KYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPTY-SEDNDPVEESEATHYQLGIACAQ 412
           K      S  N  E +   E+    +D +    PTY S+      E             Q
Sbjct: 361 KETPTLFSKPNVPEYVPSDEDTSREDDFILETLPTYDSKIQPEQAEEPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPTDEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKTKLEEVGVFLENFGQNSFIIRAHPTWFPKNQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTMQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|167635859|ref|ZP_02394168.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0442]
 gi|170687873|ref|ZP_02879087.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0465]
 gi|254683523|ref|ZP_05147383.1| DNA mismatch repair protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722044|ref|ZP_05183833.1| DNA mismatch repair protein [Bacillus anthracis str. A1055]
 gi|254739666|ref|ZP_05197360.1| DNA mismatch repair protein [Bacillus anthracis str. Kruger B]
 gi|167528816|gb|EDR91574.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0442]
 gi|170668189|gb|EDT18938.1| DNA mismatch repair protein MutL [Bacillus anthracis str. A0465]
          Length = 627

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 185/628 (29%), Positives = 301/628 (47%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---VLSKKMISSFHQDNAPKTHLP 356
           HPAK  +RF     +   I +++Q A  K  +   +      K+   S  +    +   P
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 357 KYATSLT---NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ-------- 405
           K  +       T      +E +            T     +P++E ++            
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPTQLWQPSTKPIIEEPIQEEKSWDSNEEGFELEE 418

Query: 406 -------------------LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                                    Q+H  YI +Q   GL ++DQHAA ER+ +E  R  
Sbjct: 419 LEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGLYMIDQHAAQERINYEYFRDK 478

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
                   Q LL P  IDL   E   + E  E+L ++G+  E+FG  +  +R  P    K
Sbjct: 479 VGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLFLEQFGHQSFIVRSHPTWFPK 538

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               +++ +++++++       ++   E     M+C  SI++ + + + ++  LL E+  
Sbjct: 539 GQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASIKANQYLTNDQIFALLEELRT 597

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             N   C HGRP  +     ++EK+F R
Sbjct: 598 TTNPYTCPHGRPILVHHSTYELEKMFKR 625


>gi|170744658|ref|YP_001773313.1| DNA mismatch repair protein MutL [Methylobacterium sp. 4-46]
 gi|168198932|gb|ACA20879.1| DNA mismatch repair protein MutL [Methylobacterium sp. 4-46]
          Length = 641

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/630 (37%), Positives = 374/630 (59%), Gaps = 40/630 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA ++ +E  I  GG+   ++ D+G GM
Sbjct: 12  RRLDPVLVDRIAAGEVVERPAAAVKELVENAIDAGATSIEVTIQAGGRRLIRVVDDGIGM 71

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           ++E++ +AV+RH TSK+ D D   I T GFRGEALPSIGAV+ L+L+SR  +  +G  + 
Sbjct: 72  SAEDLALAVERHATSKLPDGDLDRIDTLGFRGEALPSIGAVARLSLVSRTAEAASGHGLV 131

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRPVA   GT VEV DLF   PARL FLKS++ E   + +++RR+A+A+P++
Sbjct: 132 VDAGIRGPVRPVAAERGTRVEVTDLFAATPARLKFLKSDRAEAGAVAEILRRLAVAHPQI 191

Query: 183 SFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            FT         + +  ++  G++  R++ V+G DF  N+  L+ +     L G+ G+PT
Sbjct: 192 RFTLRGESGGGGFVLPAETGPGSWLRRLAAVLGPDFAENSAPLSLEREGFALDGHVGLPT 251

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           F+R  A   +  +NGR V+D+ +L  +R AYA+ +   R+PV+ L L  DP QVDVNVHP
Sbjct: 252 FHRAAATHMHFVVNGRPVRDRLLLGAVRGAYADVMASDRHPVLALALTCDPTQVDVNVHP 311

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP---------- 351
           AK+ +RFR P ++R  I+ +I +A+ ++G  +++ ++ + + S      P          
Sbjct: 312 AKTEVRFREPGLVRGLIVNAIHEALRREGGRSAASVAARTLESLRPAQTPLPMQAPLAAR 371

Query: 352 -------KTHLPKYATSLTNTQEKLFLQENRLSTND--------------------LLPS 384
                  ++  P+   +    Q+  F Q+    + D                       +
Sbjct: 372 SASPDARRSDPPRGGRAEPFAQDGPFAQDGPGPSPDGREPFGAQAGPPPGFAEAAQASFA 431

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
            +             E   + LG A AQ+H+ YI++QT DG+VIVDQHAAHERL++E+++
Sbjct: 432 AEALPPAAEARPPAPETPAHPLGAARAQLHETYIVAQTRDGIVIVDQHAAHERLVYERLK 491

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
           ++  +  I  Q LL PE+++L   E   + E  EDL  LG+  E FG  A+ +RE+PA L
Sbjct: 492 REREAGGIARQLLLIPEVVELDPAEADRLAEAAEDLAALGLVLEGFGHGAVLVREVPAAL 551

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
           +   +  LL D++D + +      L  R++ +L+ M+C+GSIR+GR+++  EMN LLREM
Sbjct: 552 AGGGVRALLTDVVDVLQE-GGADPLARRLDAVLSRMSCHGSIRAGRRLRPEEMNALLREM 610

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E  P S QCNHGRPT+++LKL DIE+LFGR
Sbjct: 611 EATPLSGQCNHGRPTYVELKLHDIERLFGR 640


>gi|229544350|ref|ZP_04433409.1| DNA mismatch repair protein MutL [Bacillus coagulans 36D1]
 gi|229325489|gb|EEN91165.1| DNA mismatch repair protein MutL [Bacillus coagulans 36D1]
          Length = 638

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 182/639 (28%), Positives = 306/639 (47%), Gaps = 51/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + N+IAAGE++ERP+  +KEL EN++DAES+ +E  +   G    ++ DNG 
Sbjct: 3   KIAQLDELLSNRIAAGEVVERPASVVKELAENAIDAESTVIEIDVWEAGMEKIRMIDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI +  D   I + GFRGEALPSI AVS + +++    N  G 
Sbjct: 63  GIEPDDVELAFSRHATSKIKNEHDLFRIRSLGFRGEALPSIAAVSRVEIVTST-GNGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G K  +        GT + V DLFF  PARL ++KS   E   ITDV+ R+A+++
Sbjct: 122 KAVIEGGKWVAREQAPSRRGTEITVTDLFFNTPARLKYMKSIHTELGNITDVVNRLALSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF           +   S NG+  + ++ + G +     + +  ++ +  + G+  +
Sbjct: 182 PEVSFRLRHGGKM---LLQTSGNGDVRQVLAAIYGVNIAKKMIPVQSQTLDFEINGFIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  I   Y   +P+GRYP+V++ L++DP  VD NV
Sbjct: 239 PEITRASRNYISTMVNGRFIKNYALVKAILEGYHTLLPIGRYPIVLMSLKMDPVLVDANV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS-----SFHQDNAP--- 351
           HPAK  +RF     +   I  +I+ A  K+ +  S ++ +         SF  D+ P   
Sbjct: 299 HPAKLEVRFSKEKELCRAITGAIKAAFKKQELIPSGMVRQAEKPKQEQVSFQLDHLPGKT 358

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------ 393
           +   PK  ++          +E  +  +D  P  +P  S +                   
Sbjct: 359 EPETPKAFSAPVAPHPSPRPEETEMGQHDKSPDAEPHLSVEQPAADFPAFSGENLDSVFP 418

Query: 394 ------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                                 +  A+         Q+H  YI +Q  +GL I+DQHAA 
Sbjct: 419 DEIHEPARDGFDVEEARGQDAAQQPASRIPPMYPIGQMHGTYIFAQNENGLYIIDQHAAQ 478

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+ +E  R+     K   Q +L P  ++    E   I E+ + L  +G+  E FG N+ 
Sbjct: 479 ERVKYEFFREKVGEVKKEVQEMLVPLTLEYATDEAIKIQENLDALKEVGVFLEPFGHNSF 538

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +R  P    K    +++ ++I+ ++       ++   E     M+C GSI++ R +++ 
Sbjct: 539 IVRSHPTWFPKNEEKEVIEEMIEHVLSIKKVD-IKKLREKAAIMMSCRGSIKANRHLRND 597

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E+  LL  +    +   C HGRP  I   + ++EK+F R
Sbjct: 598 EIQALLDALRMASDPFTCPHGRPIIIHYSVYELEKMFKR 636


>gi|304316822|ref|YP_003851967.1| DNA mismatch repair protein MutL [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778324|gb|ADL68883.1| DNA mismatch repair protein MutL [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 608

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 184/610 (30%), Positives = 318/610 (52%), Gaps = 23/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +++IN+I+AGE++ERP+  +KEL+ENS+DA S+ +   I  GG  + +++D+G 
Sbjct: 3   KINLLDDELINKISAGEVVERPASIVKELVENSIDAGSNNITVEIMDGGIPYIKVSDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A  RH TSKI    D  NI T GFRGEAL SI ++S + L ++   +  G 
Sbjct: 63  GMDEIDAVLAFGRHATSKIKSINDLFNIETLGFRGEALASIASISKVLLKTKEENSLYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G KI          G  +EVRD+F+  PAR  FLK    E   ITD++ ++A++ 
Sbjct: 123 LINVEGGKIIKKVKCGCPKGCSIEVRDIFYNTPARRKFLKRPSTEAMYITDMVAKIALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF +   K    +    S N +  + I ++ G++  ++ V+    +  + ++ +   
Sbjct: 183 PDISFKYIKDKKIELQ---TSGNNSVSDVILRLYGDELYSSLVQSEYTNEYLNVKVFLCK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P++ +GN N   +F+NGR V++K     I   Y   IP+ RYPVV+  + IDPR++DVNV
Sbjct: 240 PSYTKGNRNMQILFVNGRFVKNKVYNVAIEEVYKTLIPINRYPVVITYINIDPRKIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------MISSFHQ 347
           HP K  ++F +   I + I  +I+ A+NK  +       KK              +  +Q
Sbjct: 300 HPTKLEVKFSDEKEIFDSIYNTIKNALNKSNLIPVVKYEKKFTFSDVDKDYKHEQTQINQ 359

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                  +  ++  +   +++     N  + N    +D  + +  +  +    +      
Sbjct: 360 FERTTKEITNHSGDVPFIKDETISSSNGSNKNIYFDNDKISETVQDKYISNFNSLPDNND 419

Query: 408 ---IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                   +   +II +  D + ++DQHAAHER+++E+    +N+  +  +    P +++
Sbjct: 420 DKYKLIGVLFSTFIIVEKDDMVYLIDQHAAHERILYERFMSKYNN--VQGKQTTIPILVN 477

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           +  G+  +I E+ E  ++LG K E FG N+I +RE+P IL +    QL  DIID++ +  
Sbjct: 478 IEPGDEEIINENIELFNKLGYKFESFGNNSIILREVPVILGQPESRQLFIDIIDKLRNGD 537

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++ + ENI+  MAC  ++++  K+   E+  L  E++   N   C HGRP  I +K
Sbjct: 538 FNKDIKLKEENII-MMACKKAVKAMDKLSKEEIKSLFDELKITENPYTCPHGRPVIISIK 596

Query: 585 LSDIEKLFGR 594
             +IEK+F R
Sbjct: 597 KYEIEKMFKR 606


>gi|47095355|ref|ZP_00232965.1| DNA mismatch repair protein MutL [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898430|ref|ZP_05258354.1| DNA mismatch repair protein [Listeria monocytogenes J0161]
 gi|254912079|ref|ZP_05262091.1| DNA mismatch repair protein mutL [Listeria monocytogenes J2818]
 gi|254936406|ref|ZP_05268103.1| DNA mismatch repair protein MutL [Listeria monocytogenes F6900]
 gi|47016176|gb|EAL07099.1| DNA mismatch repair protein MutL [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608998|gb|EEW21606.1| DNA mismatch repair protein MutL [Listeria monocytogenes F6900]
 gi|293590047|gb|EFF98381.1| DNA mismatch repair protein mutL [Listeria monocytogenes J2818]
          Length = 603

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL++ +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLSMETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ITLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++A +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPGGEISKKQKEVQKSEQIQMSFEENKPQ 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH-------YQLGIACAQ 412
             T T   K  + E   S  D    DD           E E  H               Q
Sbjct: 361 KETPTLFSKPSIPEYVPSDLDAPREDDFILETMPSYEPEQEVEHAEQPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|46907632|ref|YP_014021.1| DNA mismatch repair protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|67460881|sp|Q71ZR6|MUTL_LISMF RecName: Full=DNA mismatch repair protein mutL
 gi|46880900|gb|AAT04198.1| DNA mismatch repair protein MutL [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 603

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLEMETST-GEAKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG   + I+ + G      +V +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGELRQVIAAIYGVSIAKKSVPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++  +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKETFHKLQLIPDGEISKKQKEDQKSEQIQMSFEENKPV 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-------GIACAQ 412
             T T   K  + E   S  D    DD           ES+A   +             Q
Sbjct: 361 KETPTLFSKPTIPEYVPSDEDAPREDDFILETMPSYEPESQAEQEEHTKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|254829837|ref|ZP_05234492.1| DNA mismatch repair protein [Listeria monocytogenes 10403S]
          Length = 601

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/600 (32%), Positives = 304/600 (50%), Gaps = 13/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLAMETST-GETKGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGISIAKKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT-HLPKYA 359
           PAK  +R      +   I Q I++A +K  +     +SKK       +    +    K A
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPDGEISKKQKEVQKSEQIQMSFEENKPA 360

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDD-----PTYSEDNDPVEESEATHYQLGIACAQIH 414
             +     K  + E   S  D    DD         E     EE             Q+H
Sbjct: 361 KEIPTLFSKPTIPEYVPSDEDAPREDDFILETMPPYEPQAEQEEHSKERIPKMYPIGQMH 420

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   + 
Sbjct: 421 ATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVRLE 480

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++    E
Sbjct: 481 EQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKLRE 539

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F R
Sbjct: 540 DAAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKR 599


>gi|290894465|ref|ZP_06557423.1| DNA mismatch repair protein MutL [Listeria monocytogenes FSL
           J2-071]
 gi|290555980|gb|EFD89536.1| DNA mismatch repair protein MutL [Listeria monocytogenes FSL
           J2-071]
          Length = 603

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/602 (32%), Positives = 303/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL++ +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLSMETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 VTLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++A +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPDGEISKKQKEVQKSEQIQMSFEENKPQ 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH-------YQLGIACAQ 412
             T T   K  + E   S  D    DD           E E  H               Q
Sbjct: 361 KETPTLFSKPSIPEYVPSDLDAPREDDFILETMPSYEPEQEVEHAEQPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKVKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|255319552|ref|ZP_05360766.1| DNA mismatch repair enzyme [Acinetobacter radioresistens SK82]
 gi|262378427|ref|ZP_06071584.1| DNA mismatch repair ATPase [Acinetobacter radioresistens SH164]
 gi|255303492|gb|EET82695.1| DNA mismatch repair enzyme [Acinetobacter radioresistens SK82]
 gi|262299712|gb|EEY87624.1| DNA mismatch repair ATPase [Acinetobacter radioresistens SH164]
          Length = 654

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 208/643 (32%), Positives = 334/643 (51%), Gaps = 50/643 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERP+  +KEL+ENS+DA ++ +   +A GG +  +I DNG 
Sbjct: 10  RIHTLDAALANQIAAGEVIERPASVVKELLENSIDAGATELIIRVAQGGSTLIEIIDNGR 69

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +AV RH TSKI  ++D   I + GFRGEAL SI AVS L+L S    +  G 
Sbjct: 70  GIHPEDLALAVMRHATSKIQSAEDLYAIASLGFRGEALASIAAVSRLSLCSSQDDSGIGY 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        ++ VA   GT + V+DLFF +PAR  FLK    E   I +++RRMA+
Sbjct: 130 QVEVNGTAFDHQEIQAVAAQKGTHIRVQDLFFNVPARRKFLKKPTTEFGHIEEIVRRMAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  V F      S R  +    +     +R+ Q++G  F  NA  ++ +S  + L G+ 
Sbjct: 190 THFDVRFVLEHNDSIRLNLPIADSGELRSQRVQQLLGRSFTENAYWIDAQSINMHLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  VDV
Sbjct: 250 GHPSDARPQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHAGYLLFLEVDPENVDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--------------------SVL 337
           NVHP K  IRF N   +  F+    ++ +++   +T+                       
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHYAKETLSQFQTATADLAQAMKAESVIHTTTGSYNPQP 369

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND--- 394
             +     H+   P+      A   T    +L  +    +   +  +    Y+       
Sbjct: 370 RHQEQFQLHRPTQPEASALGIAAPQTEISTELLTEFKASAPRTVQYAPQRPYAGSQQLNN 429

Query: 395 ----------------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                                  V       + LGIA AQ+H  YI++Q T+GL+IVD H
Sbjct: 430 ALKSYLSPLREESTQAPVIPAASVVSDHVDEFPLGIAIAQLHGIYILAQNTEGLIIVDMH 489

Query: 433 AAHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           AAHER++ ++M+  ++ ++   +Q LL P+++ +   + A I E    L RLG+  +++G
Sbjct: 490 AAHERILLQQMKSAWDQSEFWIAQQLLIPKVVSITRMQAARIEELKPQLERLGLDIDQYG 549

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
              + +R +PAIL K +   L+ ++++++  S     L  + + ILA MAC+G++R+ R+
Sbjct: 550 DEQVIVRGVPAILQKADFNTLIPELLNDLDPSDEARGLTQKRDQILAGMACHGAVRAHRQ 609

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   EMN LLR+ME+   +SQCNHGRPT+    L+ ++KLF R
Sbjct: 610 LSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLTQLDKLFAR 652


>gi|217964449|ref|YP_002350127.1| DNA mismatch repair protein MutL [Listeria monocytogenes HCC23]
 gi|254766170|sp|B8DFS3|MUTL_LISMH RecName: Full=DNA mismatch repair protein mutL
 gi|217333719|gb|ACK39513.1| DNA mismatch repair protein MutL [Listeria monocytogenes HCC23]
 gi|307570986|emb|CAR84165.1| DNA mismatch repair protein [Listeria monocytogenes L99]
          Length = 603

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL++ +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLSMETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ITLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++A +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPDGEISKKQKEVQKSEQIQMSFEENKPQ 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH-------YQLGIACAQ 412
             T T   K  + E   S  D    DD           E E  H               Q
Sbjct: 361 KETPTLFSKSSIPEYVPSDLDAPREDDFILETMPSYEPEQEVEHAEQPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|217979001|ref|YP_002363148.1| DNA mismatch repair protein MutL [Methylocella silvestris BL2]
 gi|254766172|sp|B8ETE4|MUTL_METSB RecName: Full=DNA mismatch repair protein mutL
 gi|217504377|gb|ACK51786.1| DNA mismatch repair protein MutL [Methylocella silvestris BL2]
          Length = 605

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/604 (38%), Positives = 356/604 (58%), Gaps = 10/604 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +R+L   +I++IAAGE+IERP+ A+KELIEN+LDA + R++  I  GG+   ++ D+G
Sbjct: 1   MPVRRLDPVLIDRIAAGEVIERPASALKELIENALDAGARRIDVAIEAGGRKLIRVVDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GM  E++ +AV+RH TSK+ + D S+I T GFRGEALPSIG+V+ L + SR   +  GA
Sbjct: 61  CGMAPEDLDLAVERHATSKLPEGDLSSIETLGFRGEALPSIGSVAALEIFSRAMGSAVGA 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +         P A   GT VE+RDLF   PARL FL++++ E     +++ R+A+A+
Sbjct: 121 RVKVDCGVKEGPAPAAQPQGTRVEIRDLFAGTPARLKFLRTDRAEARASAEIVERLAMAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P+V F F++     + +   + +      R S V+G+DF +NA+ +  +   + LQG+ G
Sbjct: 181 PQVRFGFASSDVRGFDLAACADSPEGRLTRFSAVLGKDFRDNALFVEAEREGVRLQGFAG 240

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT++R +A   +VF+NGR V+D+ +L   R AY + +P GR+  +VL L  DPR+VDVN
Sbjct: 241 LPTWHRASAAAQHVFVNGRPVRDRLLLGAARAAYMDFLPSGRHAALVLFLTCDPREVDVN 300

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-------SSFHQDNAP 351
           VHPAK+ +RFR+P + R  I+ ++++ +       S V     +         F     P
Sbjct: 301 VHPAKAEVRFRDPGLTRGLIVGALKQTLADAQHRASPVNGASALDVLARRGPGFSGAGGP 360

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-EATHYQLGIAC 410
                + + +                       +        +    S E     LG A 
Sbjct: 361 ANWDWRRSPANPGFDAAALAGFAEAPAAAFAAVESLAADTRANAAAPSLEDLEAPLGAAR 420

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           AQIH+ YI+SQT DG+VIVDQHAAHERL++E+++     +K   Q LL P I++L   E 
Sbjct: 421 AQIHETYIVSQTRDGIVIVDQHAAHERLVYERLKAARAGSKAPRQALLIPAIVELARAEV 480

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             I++    L   G+  E FGP A+A+ E PA+L   +  +L RD+   +++      L+
Sbjct: 481 EAILDAAVLLAEFGLIIEPFGPGAVAVTETPALLQDPDPTRLARDLAAALVEDDGAAALE 540

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            R   +LATMAC+ S+R+GR+M+  EMN LLR+ME+ P S QCNHGRPT+++LKL+D+EK
Sbjct: 541 RRFNLVLATMACHNSVRAGRRMRPEEMNALLRDMERTPGSGQCNHGRPTYVELKLADVEK 600

Query: 591 LFGR 594
           LFGR
Sbjct: 601 LFGR 604


>gi|89256853|ref|YP_514215.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315236|ref|YP_763959.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134302436|ref|YP_001122406.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156503027|ref|YP_001429092.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167009252|ref|ZP_02274183.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187932042|ref|YP_001892027.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|254368131|ref|ZP_04984151.1| DNA mismatch repair protein mutL [Francisella tularensis subsp.
           holarctica 257]
 gi|254369732|ref|ZP_04985742.1| DNA mismatch repair protein MutL [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290954345|ref|ZP_06558966.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312232|ref|ZP_06803031.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144684|emb|CAJ80015.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130135|gb|ABI83322.1| DNA mismatch repair protein MutL [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134050213|gb|ABO47284.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253941|gb|EBA53035.1| DNA mismatch repair protein mutL [Francisella tularensis subsp.
           holarctica 257]
 gi|156253630|gb|ABU62136.1| DNA mismatch repair protein MutL [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157122691|gb|EDO66820.1| DNA mismatch repair protein MutL [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712951|gb|ACD31248.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 600

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/596 (33%), Positives = 328/596 (55%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    PVA   GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREV---MPVAHVTGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLIAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L+ID  +VDVNV
Sbjct: 247 PRFNRARADMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYCEVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI     +++ +          Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAI----TTSADIKVSSHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T+ L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTSLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVEDGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENVE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ +I  E+I SS T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILVRSTPIYVKDKDIQTLITNIATELISSSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSIPEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|121604065|ref|YP_981394.1| DNA mismatch repair protein MutL [Polaromonas naphthalenivorans
           CJ2]
 gi|120593034|gb|ABM36473.1| DNA mismatch repair protein MutL [Polaromonas naphthalenivorans
           CJ2]
          Length = 644

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/635 (30%), Positives = 317/635 (49%), Gaps = 45/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LDA +++V   ++ GG     + D+G 
Sbjct: 11  PIRDLPDELISQIAAGEVVERPASVVRELLDNALDAGATQVTVRLSAGGVRLILVEDDGL 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A++RH TSKI+   D   + T GFRGEAL +I +++ ++L+SR        
Sbjct: 71  GIPREELPVALRRHATSKIASLQDLEAVGTMGFRGEALAAINSIADMSLLSRTLDTEHAW 130

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+     +I          GT VEVR+LF+  PAR  FLK++  E     D +RR A+  
Sbjct: 131 QLDGRTGEIKPASRAR---GTSVEVRELFYATPARRKFLKTDATELAHCIDAVRRHALVR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN-------GNFPERISQVIGEDFINNAVELNEK----- 227
           P V F          +    S          +  +R++ V+G +F+  ++ ++ +     
Sbjct: 188 PDVGFAIWHEGKLVEQWRACSGALAGEHSLPHHDQRLADVLGAEFVEQSIAVHYESSARR 247

Query: 228 ---SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
                 + + G  GIP   R  A+Q + ++NGR V+DK +    R+AY + +   R PV 
Sbjct: 248 ADGRPAVRVWGRAGIPDAARTRADQQFAYVNGRYVRDKVLSHAARSAYEDVLHGQRQPVY 307

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L +EIDP ++DVNVHP K  +RFR+   +   +  + + A+       +        S+
Sbjct: 308 ALYVEIDPARIDVNVHPTKIEVRFRDSREVHQAVRHATEDALAAPRAGAALADKPAAESA 367

Query: 345 FHQ----------------DNAPKTHLPKYATSLTNTQEKLFLQEN---RLSTNDLLPSD 385
                                 P  +      S  +  E L+       R S        
Sbjct: 368 VQPVVGGMFESNKAFAQQGWAQPAINFRANQGSHASDFEALWPAPPGTGRPSAPSSPMPG 427

Query: 386 DPTYSEDNDPVEESEAT------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            P    +N        T       + LG A AQ+   YI+++   GL+IVD HAAHER++
Sbjct: 428 APPAPTENPQASAPPETSSLPQGDWPLGRALAQLQGVYILAENAQGLIIVDMHAAHERIV 487

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E+++  F++++I SQ LL P        E A      + L  LG++   F P  +A+R 
Sbjct: 488 YERLKSQFDASRIASQPLLIPATFAATAQEVATAEASTDTLALLGLEITPFSPKTLAVRA 547

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P  L+  +  +L R ++ E+     +  +Q     +L TMAC+G++R+ R++   EMN 
Sbjct: 548 VPTSLAAGDAVELARSVLAELAQHDASTVIQRAQNELLGTMACHGAVRANRRLTVDEMNA 607

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LLR+ME    S QCNHGRPT+ +L L +++ LF R
Sbjct: 608 LLRQMEATERSDQCNHGRPTWRQLSLKELDSLFLR 642


>gi|16803444|ref|NP_464929.1| DNA mismatch repair protein [Listeria monocytogenes EGD-e]
 gi|224501653|ref|ZP_03669960.1| DNA mismatch repair protein [Listeria monocytogenes FSL R2-561]
 gi|254827665|ref|ZP_05232352.1| DNA mismatch repair protein mutL [Listeria monocytogenes FSL
           N3-165]
 gi|20455092|sp|Q8Y788|MUTL_LISMO RecName: Full=DNA mismatch repair protein mutL
 gi|16410833|emb|CAC99482.1| DNA mismatch repair protein [Listeria monocytogenes EGD-e]
 gi|258600044|gb|EEW13369.1| DNA mismatch repair protein mutL [Listeria monocytogenes FSL
           N3-165]
          Length = 601

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/600 (32%), Positives = 304/600 (50%), Gaps = 13/600 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLAMETST-GETKGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGISIAKKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT-HLPKYA 359
           PAK  +R      +   I Q I++A +K  +     +SKK       +    +    K A
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPEGEISKKQKEVQKSEQIQMSFEENKPA 360

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDD-----PTYSEDNDPVEESEATHYQLGIACAQIH 414
             +     K  + E   S  D    DD         E     EE             Q+H
Sbjct: 361 KEIPTLFSKPTIPEYVPSDEDAPREDDFILETMPPYEPQAEQEEHSKERIPKMYPIGQMH 420

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   + 
Sbjct: 421 ATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVRLE 480

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++    E
Sbjct: 481 EQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKLRE 539

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F R
Sbjct: 540 DTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKR 599


>gi|238924111|ref|YP_002937627.1| DNA mismatch repair enzyme (putative ATPase) [Eubacterium rectale
           ATCC 33656]
 gi|259509932|sp|C4ZA52|MUTL_EUBR3 RecName: Full=DNA mismatch repair protein mutL
 gi|238875786|gb|ACR75493.1| DNA mismatch repair enzyme (predicted ATPase) [Eubacterium rectale
           ATCC 33656]
          Length = 648

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 181/651 (27%), Positives = 303/651 (46%), Gaps = 62/651 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L+++ I++IAAGE++ERP   +KEL+EN++DA S+ +   I  GG SF +ITDN
Sbjct: 1   MPNIAILNQETIDKIAAGEVVERPCSVVKELVENAIDAGSTAITVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++ +A  RH TSKI   +D   + + GFRGEAL SI AV+ + L+++     T
Sbjct: 61  GCGIERDQVAVAFYRHSTSKIRSAEDLLTVKSLGFRGEALSSISAVARVELITKTYDELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S   +    GT   V+DLF+ +PAR  FLK+ Q E + I+D++ ++A+
Sbjct: 121 GTRYVIEGSKELSNEEIGAPDGTTFIVKDLFYNVPARRKFLKTAQTEGSYISDMVEKLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F      +      S NGN  + I  + G +  ++ +E+  +     ++G+ 
Sbjct: 181 SHPDISFKFINNNQTKLH---TSGNGNRKDIIYHIFGREISSSLLEVKHECEYFKVEGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    FINGR V+   +   I  AY   +   +YP  VL        +DV
Sbjct: 238 GKPVITRGNRNYENYFINGRYVKSNILSRAIEEAYKSFLMQHQYPFTVLYFTFFSE-LDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS----SVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF N   I   +  +I   +  K +       S  + K I   +++  P+ 
Sbjct: 297 NVHPTKMELRFDNNNEIYVELCDTIYAILAHKEMIPEVPVDSTPAPKKIVHEYKEPIPEP 356

Query: 354 HLPKYATSLTNTQEKLFLQEN-----------------------------RLSTNDLLPS 384
              +    +   + +    ++                             + S +  +  
Sbjct: 357 FEKRRINEVRAAESRSVYGQSVTATVKSSTVKGPAVNEPLTENTLNQQKVKTSASTPVVH 416

Query: 385 DDPTYSEDNDPVEESEATHYQLGIA---------------------CAQIHQNYIISQTT 423
              +     +     E  H   G                         Q+ + Y + +  
Sbjct: 417 TGNSVEPKPETSTAYEPAHVVTGTQQTLGDYDKVFLTESAKKQFSIIGQLFKTYWLIEFE 476

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHAAHE++++EK      +   TSQ +  P ++ L   EC ++ ++   + + 
Sbjct: 477 DKLYIIDQHAAHEKVLYEKTMARLANKDFTSQRISPPIVMTLDARECEMLEKYRPQIEQF 536

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + E FG     I  IP  L   ++  L  +++D+  + +T     D I   +A+M+C 
Sbjct: 537 GYEVEHFGGKEYMISAIPDNLFNIDMKDLFIEMLDDFSN-ATGRQTPDIITEKVASMSCK 595

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +++   K+   E+N+L+ E+    N   C HGRPT I +   +IEK F R
Sbjct: 596 AAVKGNDKLTLPEINKLIDELLSLDNPYNCPHGRPTIISMSKYEIEKKFKR 646


>gi|313633306|gb|EFS00158.1| DNA mismatch repair protein MutL [Listeria seeligeri FSL N1-067]
          Length = 603

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 197/606 (32%), Positives = 312/606 (51%), Gaps = 17/606 (2%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I D
Sbjct: 1   MTKNIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHLTL +     +
Sbjct: 61  NGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLTLETST-GES 119

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A
Sbjct: 120 KGTTISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +A+P +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY
Sbjct: 180 LAHPNISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSIPVKAESLDFKISGY 236

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +P  NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VD
Sbjct: 237 AILPEINRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVD 296

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +R      +   I Q I++A ++  +     +SKK            +   
Sbjct: 297 VNVHPAKLEVRLSKEKELGQLISQMIKQAFHELQLIPDGEISKKQKEIQKXXXIQMSFEE 356

Query: 357 KYATSLTNT-QEKLFLQENRLSTNDLLPSDDPTY-------SEDNDPVEESEATHYQLGI 408
                 T T   K  + E   S ND+   +D  +       SE++   +E+         
Sbjct: 357 NKPKEETPTLFSKPSIPEYVPSDNDVPIENDFVFETAPVYTSEEHIEQKETTQERIPKMY 416

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    
Sbjct: 417 PIGQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPTD 476

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E   + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +S + +
Sbjct: 477 EYVRLEEQKVKLEEVGVFLENFGQNSYIIRAHPTWFPKDEEEEMLREIIDEAL-TSPSIS 535

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           +    E+    M+C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++
Sbjct: 536 IHKLREDTAIMMSCKKSIKANHYLTMKDMETLLDTLREASDPFTCPHGRPVIIQYSTYEL 595

Query: 589 EKLFGR 594
           EK+F R
Sbjct: 596 EKMFKR 601


>gi|56707628|ref|YP_169524.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670099|ref|YP_666656.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456698|ref|ZP_03665171.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370144|ref|ZP_04986150.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874448|ref|ZP_05247158.1| mutL, DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604120|emb|CAG45119.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320432|emb|CAL08502.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568388|gb|EDN34042.1| hypothetical protein FTBG_01248 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840447|gb|EET18883.1| mutL, DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158785|gb|ADA78176.1| DNA mismatch repair protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 600

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/596 (33%), Positives = 328/596 (55%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    PVA   GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREV---MPVAHVTGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLMAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L+ID  +VDVNV
Sbjct: 247 PRFNRARADMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYCEVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI     +++ +          Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAI----TTSADIKVSSHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T+ L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTSLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVEDGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENVE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ +I  E+I SS T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILVRSTPIYVKDKDIQTLITNIATELISSSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSIPEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|284801790|ref|YP_003413655.1| DNA mismatch repair protein [Listeria monocytogenes 08-5578]
 gi|284994932|ref|YP_003416700.1| DNA mismatch repair protein [Listeria monocytogenes 08-5923]
 gi|284057352|gb|ADB68293.1| DNA mismatch repair protein [Listeria monocytogenes 08-5578]
 gi|284060399|gb|ADB71338.1| DNA mismatch repair protein [Listeria monocytogenes 08-5923]
          Length = 603

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 192/602 (31%), Positives = 308/602 (51%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLAMETST-GETKGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGISIAKKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAPK 352
           PAK  +R      +   I Q I++A +K  +     +SKK         I    ++N P 
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPDGEISKKQKEVQKSEQIQMSFEENKPA 360

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
             +P   +  T  +     ++     + +L +      E     EE             Q
Sbjct: 361 KEIPTLFSKPTIPEYVPSDEDAPRDDDFILETMPSYEPELQAEQEEHPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 REDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|121593398|ref|YP_985294.1| DNA mismatch repair protein MutL [Acidovorax sp. JS42]
 gi|120605478|gb|ABM41218.1| DNA mismatch repair protein MutL [Acidovorax sp. JS42]
          Length = 657

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 194/643 (30%), Positives = 328/643 (51%), Gaps = 54/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA ++++   +  GG     + D+G 
Sbjct: 17  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGATQITVRLLAGGVRLIAVEDDGS 76

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKI++  D  ++ T GFRGEAL +I +VS + L+SR  Q  +  
Sbjct: 77  GIPQDELPVALRRHATSKITNLHDLESVATMGFRGEALAAIASVSEMALLSRTAQQASAF 136

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 137 LLDARSGEL---RPAARSRGTTVEVKELFFSTPARRKFLKTDATELAHCIEAVRRHALAR 193

Query: 180 PKVSFTFSTIKSNRYKMNFQST----------NGNFPERISQVIGEDFINNAVELNEKSN 229
           P V F          +                     +R+S V+GEDFI ++V ++ +  
Sbjct: 194 PDVGFAIWHEGKLVEQWRATLAPAAAPDEGERQQALQQRLSDVLGEDFIRDSVPVHLRLG 253

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            +T+ G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   + PV  L ++
Sbjct: 254 AVTVTGRAGLPDAARSRADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGHKQPVYALYVQ 313

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ------------------------KA 325
           IDP++VDVNVHP K  +RFR+   +   +  +++                         +
Sbjct: 314 IDPQRVDVNVHPTKIEVRFRDSREVHQAVRHAVENALAAPRAQALAAAAASTSVAPAAPS 373

Query: 326 INKKGISTSSVLSKKMISSFHQD-------------NAPKTHLPKYATSLTNTQEKLFLQ 372
           +     + +     +  ++   +                 T  P      T     +   
Sbjct: 374 VGDSDRNPAHPPYWQAQAAIKFEERAGHKVSDLQALWGTSTAAPPPGMPATTAMAPVAPG 433

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                +     +      +        +   + LG A AQ+H  YI++++  GLV+VD H
Sbjct: 434 APTAPSFSPASAAPLAAVDM-ATAHVEDGHTWPLGRAVAQVHGVYILAESAQGLVVVDMH 492

Query: 433 AAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           AAHER+++E+++   +   +I SQ LL P        E A    H + L  LG++   F 
Sbjct: 493 AAHERIVYERLKAQVDQGARIASQPLLIPATFAATPEEVATAEAHADTLALLGLEVVPFS 552

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
           P  +A+R +P  L++ N  +L R ++ E+     +  +Q     ILATMAC+G++R+ R+
Sbjct: 553 PRTLAVRAVPTTLAQGNPVELARSVLAELATHDASTVVQRAQSEILATMACHGAVRANRR 612

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   EMN LLR+ME    S QCNHGRPT+ +L + +++ LF R
Sbjct: 613 LTLDEMNALLRQMEVTDRSDQCNHGRPTWRQLSMKELDALFLR 655


>gi|222110107|ref|YP_002552371.1| DNA mismatch repair protein Mutl [Acidovorax ebreus TPSY]
 gi|221729551|gb|ACM32371.1| DNA mismatch repair protein MutL [Acidovorax ebreus TPSY]
          Length = 657

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 197/642 (30%), Positives = 329/642 (51%), Gaps = 52/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA ++++   +  GG     + D+G 
Sbjct: 17  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGATQITVRLLAGGVRLIAVEDDGS 76

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++ H TSKI++  D  ++ T GFRGEAL +I +VS + L+SR  Q  +  
Sbjct: 77  GIPQDELPVALRSHATSKITNLHDLESVATMGFRGEALAAIASVSEMALLSRTAQQASAF 136

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 137 LLDARSGEL---RPAARSRGTTVEVKELFFSTPARRKFLKTDATELAHCIEAVRRHALAR 193

Query: 180 PKVSFTFSTIKSNRYKMNFQST----------NGNFPERISQVIGEDFINNAVELNEKSN 229
           P V F          +                     +R+S V+GEDFI ++V ++ +  
Sbjct: 194 PDVGFAIWHEGKLVEQWRATLAPAATADEGERQQALQQRLSDVLGEDFIRDSVPVHLRLG 253

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            +T+ G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   + PV  L ++
Sbjct: 254 AVTVTGRAGLPDAARSRADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGHKQPVYALYIQ 313

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ------------------------KA 325
           IDP++VDVNVHP K  +RFR+   +   +  +++                         +
Sbjct: 314 IDPQRVDVNVHPTKIEVRFRDSREVHQAVRHAVENALAAPRAQALAAAAASTSVAPAAPS 373

Query: 326 INKKGISTSSVLSKKMISSFH------------QDNAPKTHLPKYATSLTNTQEKLFLQE 373
           +     + +     +  S+              Q     +           T        
Sbjct: 374 VGDSDRNPAHPPYWQAQSAIKFEERAGHKVSDLQALWGTSTAAPPPGMPATTAMAPVAPG 433

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
              + +    S  P  + D       +   + LG A AQ+H  YI++++  GLV+VD HA
Sbjct: 434 APTAPSFSPASAAPLAAVDMATAHVEDGHTWPLGRALAQVHGVYILAESAQGLVVVDMHA 493

Query: 434 AHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AHER+++E+++   +   +I SQ LL P        E A    H + L RLG++   F P
Sbjct: 494 AHERIVYERLKAQVDQGARIASQPLLIPATFAATPEEVATAEAHADTLARLGLEVVPFSP 553

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
             +A+R +P  L++ N  +L R ++ E+     +  +Q     ILATMAC+G++R+ R++
Sbjct: 554 RTLAVRAVPTTLAQGNPVELARSVLAELATHDASTVVQRAQSEILATMACHGAVRANRRL 613

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EMN LLR+ME    S QCNHGRPT+ +L + +++ LF R
Sbjct: 614 TLDEMNALLRQMEVTDRSDQCNHGRPTWRQLSMKELDALFLR 655


>gi|295706199|ref|YP_003599274.1| DNA mismatch repair protein MutL [Bacillus megaterium DSM 319]
 gi|294803858|gb|ADF40924.1| DNA mismatch repair protein MutL [Bacillus megaterium DSM 319]
          Length = 625

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 181/626 (28%), Positives = 301/626 (48%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS+++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIVQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIELEEAGLSKIRILDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE+   A +RH TSKI    D   I T GFRGEALPSI +VS L L +       G 
Sbjct: 63  GIASEDCLTAFKRHATSKIKTEQDLFRIRTLGFRGEALPSIASVSMLELKTST-GEEAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +I      +   GT + + +LFF  PARL ++K+   E   +TDV+ R+A+++
Sbjct: 122 HLKLRGGEIVHHELTSSRKGTELVIENLFFNTPARLKYMKTVNTELGNVTDVVNRLAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS           ++ + + +G+  + ++ + G       + +N +S +  + GY  +
Sbjct: 182 PEVSIRLMHQGR---QLLYTNGSGDVRQVLAAIYGMAVAKKMIPINVQSLDYEVNGYVAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR V++  +L  ++  Y   +P+GR+P+V L + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSTIINGRFVKNYGLLKAVQQGYHTLLPIGRFPIVFLTITMDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--------DNAP 351
           HPAK  +R      +   I Q ++ A  K+ +   +V+  K  S+           D+  
Sbjct: 299 HPAKLEVRLSKEAELFELIEQGVKAAFKKQQLIPDAVVPTKSKSAVQPTEQQTFTFDHQS 358

Query: 352 KTH-----------------------LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
           KT                         P   T +    E+L      +   +    ++  
Sbjct: 359 KTSGYQPSNTVREPSFKEAPARVDEIRPPVKTEVIRQDEELQPTFREIEHYEESVEENAP 418

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
             E N   E+             Q+H  YI++Q   GL I+DQHAA ER+ +E  ++   
Sbjct: 419 IPEPNHSAEDQPEPRVPAMYPIGQMHGTYILAQNEKGLFIIDQHAAQERIKYEYFKRKLG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
                 Q LL P  ++    E  ++ E+ + L  +G+  E FG N+  +R  P    K  
Sbjct: 479 EVDSEVQELLMPLTLEFSGNEALILEEYKDMLAEVGVFLEPFGQNSYIVRSHPQWFPKGE 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             + + ++I +I        ++   E     M+C GSI++   +++ E+  LL  + K  
Sbjct: 539 EQETIEEMIQQIFTMKRV-NIEKLREEAAIMMSCKGSIKANHHLRNDEIFALLETLRKTT 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   C HGRP  I     ++EK+F R
Sbjct: 598 DPFTCPHGRPIIIHHSTYEMEKMFKR 623


>gi|291559007|emb|CBL37807.1| DNA mismatch repair protein MutL [butyrate-producing bacterium
           SSC/2]
          Length = 645

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 185/645 (28%), Positives = 303/645 (46%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L +K I+ IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG +  ++TDNG 
Sbjct: 3   KIQLLDQKTIDNIAAGEVIERPASVVKELVENAVDAKANAVTVEIKDGGMTLIRVTDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI   +D  ++ + GFRGEAL SI AV+ + L+++  ++ +G 
Sbjct: 63  GIPKDQVKTAFLRHATSKIRSVEDLLSVSSLGFRGEALSSISAVAQVELVTKTAESFSGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G +  +   +    GT   V++LF+  PAR  FLKS   E   +  ++  +A+++
Sbjct: 123 SYKIYGGEEEAFDDIGAPDGTTFLVKNLFYNTPARRKFLKSATTEAGYVEQMMVHIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F     N+    + S NG   + I  + G D     + L  ++ ++ + G+   
Sbjct: 183 PEISFKFIHNNKNK---IYTSGNGKVKDIIYHIYGRDVAGALIPLEAQNEDVKVTGFVAK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    FINGR ++   I   I   Y       RYP V L  +ID   +DVNV
Sbjct: 240 PYVSRGNRNYESYFINGRYIKSSIIYKAIEEGYRTFTMKHRYPFVCLDFKIDQELLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  IRFRN   I   ++ +++ A+ +K +                            
Sbjct: 300 HPTKMEIRFRNGREIYELVVDAVRAALLQKDLVQDVLRETPKKKELPKTKEVKKPEPFEV 359

Query: 335 ---------------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
                                    + +     + + P    P  + S  NT++  +   
Sbjct: 360 NRRKEEVQKVDQQGQGVQQQVEKQRQAVQQQIEKPSHPVKKTPTASESSKNTKKPTYAGL 419

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEA----THYQLGIACAQIHQNYIISQTTDGLVIV 429
           N  +     P         N      +               Q+ + Y + +  D L I+
Sbjct: 420 NYNTQKKDFPQYKTDELSSNQMTLREDPVFSVQARPDRKILGQLFKTYWLIEYEDQLFIM 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAAHE++ +E++ ++F   +I SQ L  P ++ +   E   +  + +    LG   E 
Sbjct: 480 DQHAAHEKVNYERLMKNFKEKEIYSQRLEPPMVVTVSMTEAEALTRYKDAFAGLGFTIES 539

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG N   IRE+PA L       L  +++D +   + T    + I + +ATMAC  SI+  
Sbjct: 540 FGGNEYCIREVPANLYGIGERDLFMELLDAVSQENGTLD-TEVIASKIATMACKMSIKGN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++  +E+  LL E+ K  N  QC HGRPT IK+   +I+K F R
Sbjct: 599 QRVSLMEVEHLLDELMKLENPYQCPHGRPTIIKMSKYEIDKKFKR 643


>gi|330826560|ref|YP_004389863.1| DNA mismatch repair protein mutL [Alicycliphilus denitrificans
           K601]
 gi|329311932|gb|AEB86347.1| DNA mismatch repair protein mutL [Alicycliphilus denitrificans
           K601]
          Length = 654

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 204/633 (32%), Positives = 336/633 (53%), Gaps = 47/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA +++V   +  GG     + D+G 
Sbjct: 27  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGATQVTVRLLAGGVRLIAVEDDGM 86

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKI +  D  ++ T GFRGEAL +I +VS + L+SR  Q  +  
Sbjct: 87  GIPRDELPIALRRHATSKIGNLHDLESVATMGFRGEALAAIASVSEMALLSRTAQQASAF 146

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 147 MLDARSGEL---RPAARSQGTTVEVKELFFSTPARRKFLKTDATELAHCVEAVRRHALAR 203

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN------FPERISQVIGEDFINNAVELNEKSNEITL 233
           P V F          +      +G          R++ V+GEDFI  +V ++ +S  IT+
Sbjct: 204 PDVGFAIWHEGKLVEQWRATLAHGEPADAQALERRLADVLGEDFIRESVPVHLRSGAITV 263

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   + PV  L +++DP+
Sbjct: 264 TGRAGLPDAARSRADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGQKQPVYALYVQMDPQ 323

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           +VDVNVHP K  +RFR+   +   +  +++ A+        + +     ++   D+  K 
Sbjct: 324 RVDVNVHPTKIEVRFRDSREVHQAVRHAVENALAAPRAQALASVPVAAAAAPASDSGRK- 382

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH---------- 403
              ++   +   Q  +  +E        L +   T +    P   + AT           
Sbjct: 383 ---QFQLPIWQAQAAIRFEERAGHKVSDLQALWGTPAAAPQPAMPAAATPPAAIEAPPLP 439

Query: 404 ---------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                                + LG A AQIH  YI++++  GLV+VD HAAHER+++E+
Sbjct: 440 AAAAAAAAAAASVPAAPTESAWPLGRAVAQIHGVYILAESAQGLVVVDMHAAHERIVYER 499

Query: 443 MRQDFNST-KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           ++   +   ++ SQ LL P        E A    H + L  LG++   F P  +A+R +P
Sbjct: 500 LKAQVDQGARLASQPLLIPATFAATPEEVATAESHADTLALLGLEIVPFSPRTLAVRAVP 559

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
             L++ N  +L R ++ E+     +  +Q     ILATMAC+G++R+ RK+   EMN LL
Sbjct: 560 NTLAQGNPVELARSVLAELGQHDASTVVQRARNEILATMACHGAVRANRKLTIDEMNALL 619

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ME    S QCNHGRPT+ +L + +++ LF R
Sbjct: 620 RQMEVTERSDQCNHGRPTWRQLTVKELDALFLR 652


>gi|328676645|gb|AEB27515.1| DNA mismatch repair protein MutL [Francisella cf. novicida Fx1]
          Length = 600

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 198/596 (33%), Positives = 325/596 (54%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++     V    GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREVVPAAHV---TGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLIAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L+ID  +VDVNV
Sbjct: 247 PRFNRARADMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYCEVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI     +++ +          Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAI----TTSADIKVSSHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T+ L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTSLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVDDGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENVE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ +I  E+  SS T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILVRSTPIYVKDKDIQTLITNIATELTSSSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSISEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|254246240|ref|ZP_04939561.1| DNA mismatch repair enzyme [Burkholderia cenocepacia PC184]
 gi|124871016|gb|EAY62732.1| DNA mismatch repair enzyme [Burkholderia cenocepacia PC184]
          Length = 667

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/650 (29%), Positives = 322/650 (49%), Gaps = 65/650 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELALALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADAAHAMK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A + GT +EVR+L F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGVLSPAAGSIGTTIEVRELHFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDSFATAHLPLDEQAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L + P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLVLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNP----TIIRNFIIQSIQKA---------------INKKGISTSSVLSKKM 341
           P+K  +RFR+       + + + +++ +                +       +S L   +
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAHLEPAPRGPASFLDTPL 375

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT------------- 388
                            + S +++    ++++ R++   L  +                 
Sbjct: 376 GQGTSHTTGGTGGSSFSSPSSSSSAGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGA 435

Query: 389 ------------------------YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                                         P+         LG A  QIH  Y+++Q   
Sbjct: 436 GTPEGTTLIARDAADSTDAPVAPLPGFAAAPLAAGAHDEQPLGFALGQIHGIYVLAQNAY 495

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GLVIVD HAAHER+++E+ +       +  Q+LL P  +     E   + E  + L  LG
Sbjct: 496 GLVIVDMHAAHERILYEQFKNALADRTVAVQSLLLPISMTATPVEIGTVEEERDTLESLG 555

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
                  P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ 
Sbjct: 556 FDLAVLSPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHH 615

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 616 AVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 665


>gi|319649470|ref|ZP_08003626.1| DNA mismatch repair protein [Bacillus sp. 2_A_57_CT2]
 gi|317398632|gb|EFV79314.1| DNA mismatch repair protein [Bacillus sp. 2_A_57_CT2]
          Length = 640

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 177/642 (27%), Positives = 306/642 (47%), Gaps = 55/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + N+IAAGE++ERP+  +KEL+ENS+DA S+ +E      G +  +I DNG 
Sbjct: 3   KIIQLDDALSNKIAAGEVVERPASVVKELMENSIDAGSTIIEIEAEEAGLAKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI D  D   I T GFRGEALPSI +VS + + +    +  G 
Sbjct: 63  GIEEDDVLNAFHRHATSKIKDENDLFRIRTLGFRGEALPSIASVSRIEMKTSTGDD--GT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+  +       GT + V DLFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 121 RVVIEGGKVEVMEKAPGRKGTDLTVTDLFFNTPARLKYMKTIHTELGNITDVVNRLALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+      +    K+   + NG+  + ++ + G + +   V +   S +  + GY  +
Sbjct: 181 PEVAIRLIHNER---KLLQTNGNGDVRQVLAAIYGLNIVKKMVRIEASSLDFKISGYAAM 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I+  Y   +P+GRYP+V+L +E+DP  VDVNV
Sbjct: 238 PEITRASRNYISTMINGRFIKNYSLAKAIQEGYHTLLPIGRYPIVLLNIEMDPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------------------VLS 338
           HP+K  +R      +   +  +++ A  K+ +  S                         
Sbjct: 298 HPSKMEVRLSKEHELNELVSDALKAAFKKEELIPSGFTQPKTMKPKSEQTALELDHLPEH 357

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           ++ + SF ++            +   + + L  +       DL  +     S   + + E
Sbjct: 358 REHVPSFVREAREDAIRQYPNGADPQSPQSLPGEPAAAEYPDLQDAPLIDLSPSAEELPE 417

Query: 399 SEATHYQ--------------------------LGIACAQIHQNYIISQTTDGLVIVDQH 432
           ++   +Q                                Q+H  YI +Q   GL I+DQH
Sbjct: 418 ADQHIFQPEEPRAAGLEQFLAETATVDEPSRVPPLYPIGQMHGTYIFAQNDRGLYIIDQH 477

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  R+     +   Q +L P   +    +   I E+  +L ++G+  E+FG 
Sbjct: 478 AAQERIKYEYFREKVGQVESELQEMLIPLTFEYSTDDYIKIDEYKGELEKVGVFLEQFGH 537

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N+  +R  P  L K    +++ D+I++++       ++   E     M+C  SI++   +
Sbjct: 538 NSFIVRSHPQWLPKGEEQEIIEDMIEQLLAMKRVD-IKKLREEAAIMMSCKASIKANHHL 596

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ E+  LL E+ ++ +   C HGRP  I     ++EK+F R
Sbjct: 597 RNDEIQALLDELRRSSDPFTCPHGRPIIIHYSTYEMEKMFKR 638


>gi|229168508|ref|ZP_04296231.1| DNA mismatch repair protein mutL [Bacillus cereus AH621]
 gi|228614914|gb|EEK72016.1| DNA mismatch repair protein mutL [Bacillus cereus AH621]
          Length = 647

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 304/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            ++I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLSIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPIGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHTKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
                                              Q+  P   L +   S   + + +  
Sbjct: 359 RESSMPNIVLPTGMDEKQEETTTVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSSKPVIE 418

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ-----LGIACAQIHQNYIISQTTDGL 426
           Q  R         DD    E  + V E +                Q+H  YI +Q  +GL
Sbjct: 419 QTVREEKEWTSNDDDFELEELEEEVHEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVTQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|114705763|ref|ZP_01438666.1| DNA mismatch repair protein [Fulvimarina pelagi HTCC2506]
 gi|114538609|gb|EAU41730.1| DNA mismatch repair protein [Fulvimarina pelagi HTCC2506]
          Length = 641

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/642 (38%), Positives = 386/642 (60%), Gaps = 49/642 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L E +I+QIAAGE++ERP+  +KEL+EN+LDA + R++   AGGGK+  ++TD+G
Sbjct: 1   MPIVQLDEFLIDQIAAGEVVERPASVVKELLENALDAGARRIQIATAGGGKTLIRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+  +E+ +AV+RHCTSK++     I + GFRGEALPSIG+V+ L+L SR    +   +
Sbjct: 61  RGVPKDELRLAVKRHCTSKLAGGLDKIMSLGFRGEALPSIGSVARLSLASRAEGASEAFE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +   +     P  ++ GT VEVRDLF ++PARL FLKS++ E + ITD++RR AIA+P
Sbjct: 121 VKVEAGRCDGPMPAGLSKGTTVEVRDLFQSVPARLKFLKSDRAEASAITDIVRRSAIAFP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F  S    +R  +   + +      IS V+G+DF +NAV +     ++ L G+ G+P
Sbjct: 181 GVRFELSGPDRSRLVLEAAAPDDPLAR-ISDVVGKDFADNAVAIEAVREDVYLSGFAGLP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +F+RGN+   Y ++NGR V+D  ++S ++ AY++ +  GRYPV  L +E+DP  VDVNVH
Sbjct: 240 SFDRGNSLAQYFYVNGRPVRDWMLVSALQGAYSDMMAKGRYPVAALFVELDPALVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------HQDNAPK- 352
           PAK+ +RFR+P ++R  I+ +I++A+  +G+  S+V +  +++ F        Q+ A + 
Sbjct: 300 PAKADVRFRDPQLVRGLIVGAIREAMATEGVRGSTVAASGLMARFSAGPKREPQEQAGRF 359

Query: 353 ----------------------------THLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                                       T  P       +   + F       T D   S
Sbjct: 360 DGFSPGAPDIAMKPRQSFGASNLAGYEATKRPMTPFDPASAAYRPFEAGAFTETTDRQVS 419

Query: 385 DDPTYSEDNDP------------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                                   + +    Y LG A AQ+ +N+I+++T DGLV+VD H
Sbjct: 420 SGFAEDGQTPFDAGLATEVFAGTADAAVVKSYPLGAAKAQLFENFILAETKDGLVLVDGH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHERL++E+++   + T+I SQ LL PEI+DL EG+   + E  E    LG+  ERFGP
Sbjct: 480 AAHERLVYERLKAALHGTQIASQMLLIPEIVDLSEGDADRLAEASEAFSVLGLHLERFGP 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
            AIA+RE PAIL + +  +L++D+ +E+ +  T  +++ RI+++ AT+AC+GS+R+GR++
Sbjct: 540 GAIAVRETPAILGQCDAKRLVKDLAEELAEFGTGDSVRSRIDSVAATIACHGSVRTGRRL 599

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +  EMN LLREME  P S  CNHGRPTFI+LK +D+E LF R
Sbjct: 600 KPEEMNALLREMEVTPGSGTCNHGRPTFIELKRADLEALFKR 641


>gi|291528991|emb|CBK94577.1| DNA mismatch repair protein MutL [Eubacterium rectale M104/1]
          Length = 648

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 183/651 (28%), Positives = 305/651 (46%), Gaps = 62/651 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L+++ I++IAAGE++ERP   +KEL+EN++DA S+ +   I  GG SF +ITDN
Sbjct: 1   MPNIAILNQETIDKIAAGEVVERPCSVVKELVENAIDAGSTAITVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++ +A  RH TSKI   +D   + + GFRGEAL SI AV+ + L+++     T
Sbjct: 61  GCGIERDQVAVAFYRHSTSKIRSAEDLLTVKSLGFRGEALSSISAVARVELITKTYDELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S   +    GT   V+DLF+ +PAR  FLK+ Q E + I+D++ ++A+
Sbjct: 121 GTRYVIEGSKELSNEEIGAPDGTTFIVKDLFYNVPARRKFLKTAQTEGSYISDMVEKLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F      +      S NGN  + I  + G +  ++ +E+  +     ++G+ 
Sbjct: 181 SHPDISFKFINNNQTKLH---TSGNGNRKDIIYHIFGREISSSLLEVKHECEYFKVEGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    FINGR V+   +   I  AY   +   +YP  VL        +DV
Sbjct: 238 GKPVITRGNRNYENYFINGRYVKSNILSRAIEEAYKSFLMQHQYPFTVLYFTFFSE-LDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS----SVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF N   I   +  +I   +++K +       S  + K I   +++  P+ 
Sbjct: 297 NVHPTKMELRFDNNNEIYVELCDTIYAILSRKEMIPEVPVDSTPAPKKIVHEYKEPIPEP 356

Query: 354 HLPK-----------------------------YATSLTNTQEKLFLQENRLSTNDLLPS 384
              +                              A +   T+  L  Q+ + S +  +  
Sbjct: 357 FEKRRINEVRAAESRSVYGQSVTATVKNSTVKGPAVNEPLTENTLNQQKAKTSASTPVVH 416

Query: 385 DDPTYSEDNDPVEESEATHYQLGIA---------------------CAQIHQNYIISQTT 423
              +     +     E      G                         Q+ + Y + +  
Sbjct: 417 TGNSVELTPETSTSYEPAQAVTGTQQTLGDYDKVFLTESAKKQFSIIGQLFKTYWLIEFE 476

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHAAHE++++EK      +   TSQ +  P ++ L   E  ++ ++   + + 
Sbjct: 477 DKLYIIDQHAAHEKVLYEKTMARLANKDFTSQRISPPIVMTLDARESEMLEKYRPQIEQF 536

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + E FG     I  IP  L   ++  L  +++D+  + +T     D I   +A+M+C 
Sbjct: 537 GYEVEHFGGKEYMISAIPDNLFNIDMKDLFIEMLDDFSN-ATGRQTPDIITEKVASMSCK 595

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +++   K+   E+N+L+ E+    N   C HGRPT I +   +IEK F R
Sbjct: 596 AAVKGNDKLTLPEINKLIDELLSLDNPYNCPHGRPTIISMSKYEIEKKFKR 646


>gi|220932003|ref|YP_002508911.1| DNA mismatch repair protein MutL [Halothermothrix orenii H 168]
 gi|254766169|sp|B8CX97|MUTL_HALOH RecName: Full=DNA mismatch repair protein mutL
 gi|219993313|gb|ACL69916.1| DNA mismatch repair protein MutL [Halothermothrix orenii H 168]
          Length = 644

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/646 (29%), Positives = 320/646 (49%), Gaps = 55/646 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I++L E + NQI+AGE++ERP+  +KEL+ENSLDA S+++   I  GGK   ++ DN
Sbjct: 1   MPEIKRLPESVANQISAGEVVERPASVVKELVENSLDAGSNKILIEIENGGKDLIRVKDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ S+EI +A  R+ TSKI+D  D  ++ + GFRGEAL SI +VS L ++SR      
Sbjct: 61  GHGIPSDEIEIAFDRYATSKITDINDLYSLKSLGFRGEALASIASVSILDIISRTKSQTK 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             ++ + G K+ S  P   + GT + V+DLFF  PAR  +LK+ + E   I+++I R A+
Sbjct: 121 AIKMRLKGGKVISKEPCGASVGTDIIVKDLFFNTPARYKYLKTTRNEFKHISNIITREAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           AYP V+FT         K       G   + I  + G++   + V+++ +   I + GY 
Sbjct: 181 AYPGVNFTLIHNGRIVLK---TPGTGKTLDCIYAIYGKEMAQSLVKIDYEDRYIKVSGYI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P + R N +    F+N R V +  +   +  AY   +P G YPVV L L+++P  VDV
Sbjct: 238 SRPDYYRYNRSYEIFFVNKRAVHNSILNRGVEEAYQGLLPPGAYPVVFLNLKLNPILVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST----SSVLSKKMISSFHQDNAPKT 353
           NVHP K  ++F    +I+  I   I   ++K   S     +     +   +  +    K 
Sbjct: 298 NVHPTKKEVKFSRDKVIKEVIQNGINIELSKLDKSPRLKRNINPLNRDDKTKDKSEYQKI 357

Query: 354 HLPKYATSLTNTQEKLFLQENRLS------------------------------------ 377
            LP+    +TN      + +N+                                      
Sbjct: 358 KLPEDKEQITNKSSDAGILKNQNPLDSQDSILLPSKKNGFYSKKNSQVSQNKFMDINNKL 417

Query: 378 ---------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D     D    +DN   E        +     QI   YII++  DGL I
Sbjct: 418 EKTEINDNYKKDKHYKTDSINIKDNSIKENKNKMDIPIKRVLGQIKNTYIIAEGRDGLYI 477

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQH AHER++++   + +N+++I SQ L+ P  I+    E  ++  +   L ++G K E
Sbjct: 478 IDQHNAHERILYQSFIEKYNNSEIVSQPLVVPVNIETTAPEAEVLKSYLPQLEKMGFKLE 537

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG N+  +RE+P+++ K++  +++R++ID++++        + I  I++ M+C G+I++
Sbjct: 538 VFGINSFIVREVPSLIKKRSNKRVVREVIDKLLEHDKAMKPSELINEIISYMSCRGAIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           G  +   E  +++  + K  N  +C HGRP  I +   DI K  GR
Sbjct: 598 GEYLDKKEAEQIIEGLFKTDNPYRCPHGRPIIIHITEDDINKGMGR 643


>gi|254372542|ref|ZP_04988031.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570269|gb|EDN35923.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           novicida GA99-3549]
          Length = 600

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 201/596 (33%), Positives = 322/596 (54%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P A   GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREV---VPAAHVTGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLIAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR V+DK +   I+ AY + +   RYP  +L L+ID R+VDVNV
Sbjct: 247 PRFNRARADMQNFYINGRIVKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYREVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI        S           Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAITTNADIKVS----SHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T  L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTTLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVEDGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENVE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ +I  E+   S T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILVRSTPIYVKDKDIQTLITNIATELTSLSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSISEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|163941456|ref|YP_001646340.1| DNA mismatch repair protein [Bacillus weihenstephanensis KBAB4]
 gi|229890121|sp|A9VS12|MUTL_BACWK RecName: Full=DNA mismatch repair protein mutL
 gi|163863653|gb|ABY44712.1| DNA mismatch repair protein MutL [Bacillus weihenstephanensis
           KBAB4]
          Length = 644

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 184/645 (28%), Positives = 304/645 (47%), Gaps = 57/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            ++I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLSIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPIGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQSAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHTKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
                                              Q+  P   L +   S   + +   +
Sbjct: 359 RESSMPNIVLPTGMDEKQEETTTVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSSKPETV 418

Query: 372 QENR--LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +E +   S +D    ++           E             Q+H  YI +Q  +GL ++
Sbjct: 419 REEKEWTSNDDDFELEELEEEVGEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGLYMI 478

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+  E+
Sbjct: 479 DQHAAQERINYEYFRDKVGRVTQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLFLEQ 538

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI++ 
Sbjct: 539 FGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASIKAN 597

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 QYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 642


>gi|224499740|ref|ZP_03668089.1| DNA mismatch repair protein [Listeria monocytogenes Finland 1988]
          Length = 603

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 193/602 (32%), Positives = 308/602 (51%), Gaps = 15/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLAMETST-GETKGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGISIAKKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAPK 352
           PAK  +R      +   I Q I++A +K  +     +SKK         I    ++N P 
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPEGEISKKQKEVQKSEQIQMSFEENKPA 360

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
             +P   +  T  +     ++     + +L +      E     EE             Q
Sbjct: 361 KEIPTLFSKPTIPEYVPSDEDAPREDDFILETMPSYEPELQAEQEEHPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVR 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++   
Sbjct: 481 LEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKL 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            EN    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F
Sbjct: 540 RENTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMF 599

Query: 593 GR 594
            R
Sbjct: 600 KR 601


>gi|311068228|ref|YP_003973151.1| DNA mismatch repair protein [Bacillus atrophaeus 1942]
 gi|310868745|gb|ADP32220.1| DNA mismatch repair protein [Bacillus atrophaeus 1942]
          Length = 625

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 185/626 (29%), Positives = 303/626 (48%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  I   G +  ++ DNG 
Sbjct: 3   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLASIRVLDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEIKTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G  I S    +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 QLMLQGGNIISETRSSGRKGTEITVTNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       V L+  S +  ++GY  +
Sbjct: 182 PEVSIRLRHQGK---NLLQTTGNGDVRHVLAAIYGMATAKKMVPLHVSSLDFDVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------- 350
           HP+K  +R    T +   I   I+    ++ +  S+ L KK       +           
Sbjct: 299 HPSKLEVRLSKETELHELIRDGIKDVFKQQQLIPSAQLPKKSAPIIKNEQQFMNFDTRPA 358

Query: 351 ----PKTHLPKYAT------------------SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                KT  P Y+                   +     + L   +    T       +  
Sbjct: 359 EQKPEKTSEPSYSPMKLSSVVKEPAETEEEIRTDIPVPDPLIETDQGDHTAFAEHQPEAA 418

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            SE     E S++    +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+   
Sbjct: 419 ESEQELVQEHSQSERVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             +   Q ++ P        E  +I +H  +L  +G+  E FG N+  +R  PA   K  
Sbjct: 479 EVEPEVQDMIVPLTFHYSTNEALIIEQHQYELENVGVFLEPFGSNSYIVRCHPAWFPKGE 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              L+ +II +++DS     ++   E     M+C GSI++ R +++ E+  LL E+    
Sbjct: 539 EALLIEEIIQQVLDSKNID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDELRGTS 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   C HGRP  I     ++EK+F R
Sbjct: 598 DPFTCPHGRPIIIHHSTYEMEKMFKR 623


>gi|167765540|ref|ZP_02437604.1| hypothetical protein CLOSS21_00034 [Clostridium sp. SS2/1]
 gi|167712725|gb|EDS23304.1| hypothetical protein CLOSS21_00034 [Clostridium sp. SS2/1]
          Length = 645

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 185/645 (28%), Positives = 303/645 (46%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L +K I+ IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG +  ++TDNG 
Sbjct: 3   KIQLLDQKTIDNIAAGEVIERPASVVKELVENAVDAKANAVTVEIKDGGMTLIRVTDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI   +D  ++ + GFRGEAL SI AV+ + L+++  ++ +G 
Sbjct: 63  GIPKDQVKTAFLRHATSKIRSVEDLLSVSSLGFRGEALSSISAVAQVELVTKTAESFSGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G +  +   +    GT   V++LF+  PAR  FLKS   E   +  ++  +A+++
Sbjct: 123 SYKIYGGEEEAFEDIGAPDGTTFLVKNLFYNTPARRKFLKSATTEAGYVEQMMVHIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F     N+    + S NG   + I  + G D     + L  ++ ++ + G+   
Sbjct: 183 PEISFKFIHNNKNK---IYTSGNGKVKDIIYHIYGRDVAGALIPLEAQNEDVKVTGFVAK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    FINGR ++   I   I   Y       RYP V L  +ID   +DVNV
Sbjct: 240 PYVSRGNRNYESYFINGRYIKSSIIYKAIEEGYRTFTMKHRYPFVCLDFKIDQELLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  IRFRN   I   ++ +++ A+ +K +                            
Sbjct: 300 HPTKMEIRFRNGREIYELVVDAVRAALLQKDLVQDVLRETPKKKELPKTKEVKKPEPFEV 359

Query: 335 ---------------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
                                    + +     + + P    P  + S  NT++  +   
Sbjct: 360 NRRKEEVQKVDQQGQGVQQQVEKQRQGVQQQIEKPSHPVKKTPTASESSKNTKKPTYAGL 419

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI----ACAQIHQNYIISQTTDGLVIV 429
           N  +     P         N      +               Q+ + Y + +  D L I+
Sbjct: 420 NYNTQKKEFPQYKTDELSSNQMTLREDPVFSVQARADRKILGQLFKTYWLIEYEDQLFIM 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAAHE++ +E++ ++F   +I SQ L  P ++ +   E   +  + +    LG   E 
Sbjct: 480 DQHAAHEKVNYERLMKNFKEKEIYSQRLEPPMVVTVSMTEAEALTRYKDAFAGLGFTIES 539

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG N   IRE+PA L       L  +++D +   + T    + I + +ATMAC  SI+  
Sbjct: 540 FGGNEYCIREVPANLYGIGERDLFMELLDAVSQENGTLD-TEVIASKIATMACKMSIKGN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++  +E+  LL E+ K  N  QC HGRPT IK+   +I+K F R
Sbjct: 599 QRVSLMEVEHLLDELMKLENPYQCPHGRPTIIKMSKYEIDKKFKR 643


>gi|118497176|ref|YP_898226.1| DNA mismatch repair protein [Francisella tularensis subsp. novicida
           U112]
 gi|194323474|ref|ZP_03057251.1| DNA mismatch repair protein MutL [Francisella tularensis subsp.
           novicida FTE]
 gi|118423082|gb|ABK89472.1| DNA mismatch repair enzyme with ATPase activity [Francisella
           novicida U112]
 gi|194322329|gb|EDX19810.1| DNA mismatch repair protein MutL [Francisella tularensis subsp.
           novicida FTE]
          Length = 600

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 198/596 (33%), Positives = 326/596 (54%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++     V    GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREVVPAAHV---TGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLIAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L+ID R+VDVNV
Sbjct: 247 PRFNRARADMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYREVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI     +++ +          Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAI----TTSADIKVSSHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T+ L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTSLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  +G+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVENGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENVE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ +I  E+  SS T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILVRSTPIYVKDKDIQTLITNIATELTSSSKTKSIEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSIPEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|157829199|ref|YP_001495441.1| DNA mismatch repair protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|166232105|sp|A8GU58|MUTL_RICRS RecName: Full=DNA mismatch repair protein mutL
 gi|157801680|gb|ABV76933.1| DNA mismatch repair protein [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 610

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/610 (39%), Positives = 372/610 (60%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NI+TFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKFDESDFLNINTFGFRGEALPSIAAISKMLITSKKRDADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E      V++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVGVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDGKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+I+P+ VDV
Sbjct: 241 SSPTYNRASSEDQFLFINNRPVKDKLLQIALRVAYQDYLARDRYPICAIFLQINPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKT 353
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F        +P +
Sbjct: 301 NVHPAKAEVRFHDPDYVRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNKQSPVS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDNDPVEESEATHYQL 406
            +    +   + +       N +  N       D L         +N    E +      
Sbjct: 361 KVINVNSKSADYRPTTHSTLNTVPQNHVCQKLIDTLSHAKIEQEVENRIEHEQQIRKQYK 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  YIISQT D +VI DQHAAH+RL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYIISQTEDSIVITDQHAAHKRLGYEKIKHYLKTEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D  
Sbjct: 481 PNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME    S QCNHGRPT+I+LK
Sbjct: 541 KNIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTLLSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|229018964|ref|ZP_04175806.1| DNA mismatch repair protein mutL [Bacillus cereus AH1273]
 gi|229025207|ref|ZP_04181631.1| DNA mismatch repair protein mutL [Bacillus cereus AH1272]
 gi|228736140|gb|EEL86711.1| DNA mismatch repair protein mutL [Bacillus cereus AH1272]
 gi|228742292|gb|EEL92450.1| DNA mismatch repair protein mutL [Bacillus cereus AH1273]
          Length = 647

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 185/648 (28%), Positives = 303/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLMIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  ++  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAVQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQSAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHTKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
                                              Q+  P   L +   S   + + +  
Sbjct: 359 RESSMPNIVLPTGMDEKQEETTTVKRPAQLWQPPKQEWQPPQSLVREEQSWQPSSKPVIE 418

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ-----LGIACAQIHQNYIISQTTDGL 426
           +  R         DD    E  + V E +                Q+H  YI +Q  +GL
Sbjct: 419 ETVREEKEWTSNDDDFELEELEEEVPEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|15895111|ref|NP_348460.1| DNA mismatch repair protein [Clostridium acetobutylicum ATCC 824]
 gi|20455120|sp|Q97I20|MUTL_CLOAB RecName: Full=DNA mismatch repair protein mutL
 gi|15024811|gb|AAK79800.1|AE007692_8 DNA mismatch repair enzyme, MutL [Clostridium acetobutylicum ATCC
           824]
 gi|325509250|gb|ADZ20886.1| DNA mismatch repair protein [Clostridium acetobutylicum EA 2018]
          Length = 622

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 190/624 (30%), Positives = 322/624 (51%), Gaps = 34/624 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I  LSE   N+IAAGE++ERP   +KEL+ENS+DA +  +   I  GG++  ++ D+G
Sbjct: 1   MRINILSEDTSNKIAAGEVVERPFSVVKELVENSIDAGAKTINIEIENGGRTLIKVLDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           +G+  ++I  A   H TSKIS   D  +I+T GFRGEALPSI +VS  TL SR  +N  G
Sbjct: 61  YGIDKDDIEKAFMPHATSKISKLQDIYSINTLGFRGEALPSIASVSKTTLKSRTKENEFG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I+ISG  +  ++    N GT +EVRDLF+ +PAR  FLKS   E + I+D++ R+A+A
Sbjct: 121 REISISGGSVDYIKDCGTNIGTHIEVRDLFYNVPAREKFLKSTAKEASSISDIVNRLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           + ++SF          ++       N  + I  + G+   +N +     ++ +++ GY G
Sbjct: 181 HSEISFRLINNGK---RVITTYATDNLIDTIRAIYGKKICDNVISFERHTDLVSVHGYVG 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
               +RG+ N   +FIN R +++K I + +  A    + + ++P  ++ L+I P  VDVN
Sbjct: 238 NAEISRGSRNNQSIFINKRYIKNKLITAAVENAVKSFMMINKFPFFIIFLDIFPEFVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQ----KAINKKGISTSSVLSKKMISSFHQD------ 348
           VHP KS ++F+N   I   I  ++      ++ +     +    +  +    +D      
Sbjct: 298 VHPTKSEVKFQNERDIFKIIFDTVHEGIRNSLKESFKVEALKEEEDKLFDIKEDVITKNE 357

Query: 349 ---------NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE-DNDPVEE 398
                       K   P       + +  +   +N    N     DD    +   +  +E
Sbjct: 358 IKHDDKIDGYIKKDSFPVPVQIPIDLKRPIENYDNSTKENKDRSFDDFREKDIIKETSQE 417

Query: 399 SEATH--------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
            E           +       Q +  YI++++ + L I+DQHAAHE+++FEK R+D  + 
Sbjct: 418 KETYDIITNKKAKFPELRVIGQFNNTYILAESFEELYIIDQHAAHEKILFEKYREDIKNK 477

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            ++SQ L+TP +++LL  +     E+ E     G   E FG N +AI+E+P  L K  + 
Sbjct: 478 GVSSQILITPSVVELLPEDFIYYDENKEVFKNAGFVIEYFGDNTVAIKEVPLFLGKPLVK 537

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            L  +IID + +  +  T + +  +I AT AC  ++++  ++   EM  L++++    + 
Sbjct: 538 DLFLEIIDNLKNMGSGETSEVKYRSI-ATAACKSAVKAYHELTHDEMKTLIQDLRFAEDP 596

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C HGRPT ++L ++D EK F R
Sbjct: 597 FNCPHGRPTIVRLTVTDFEKKFKR 620


>gi|262372217|ref|ZP_06065496.1| DNA mismatch repair protein MutL [Acinetobacter junii SH205]
 gi|262312242|gb|EEY93327.1| DNA mismatch repair protein MutL [Acinetobacter junii SH205]
          Length = 657

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 212/648 (32%), Positives = 343/648 (52%), Gaps = 55/648 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERPS  +KEL+ENS+DA ++ +   +A GG +  +I DNG 
Sbjct: 8   RIHTLDAALANQIAAGEVIERPSSVVKELLENSIDAGATELIIRVAQGGSTLIEIIDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S+++P+AV RH TSKI  S+D   I + GFRGEAL SI AVS LTL S       G 
Sbjct: 68  GIHSDDLPLAVMRHATSKIKTSEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDDQGIGY 127

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        V+ VA   GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 128 QVEVNGTAFDHQQVQAVAAQKGTHIRVQDLFFNVPARRKFLKKPSTEFGHIEEIVRRLAL 187

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + F      + R  +    +     +R+ Q++G+ FI NA  ++ +S  + L G+ 
Sbjct: 188 THFDIRFVLEHNDNIRLNLPVADSGELRYQRVQQLLGQQFIQNAYWIDAESINMRLSGWL 247

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   ++   +L LE+DP  +DV
Sbjct: 248 GHPSDARAQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQHSSYLLFLEVDPENIDV 307

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS----KKMISSFHQDNAPK- 352
           NVHP K  IRF N   +  F+    ++ +++   +++ +      ++  ++F+  + PK 
Sbjct: 308 NVHPTKHEIRFLNQREVHEFVRHYAKETLSQFQTASADLSQAMKVEESTTNFNYQSQPKY 367

Query: 353 --------------------------------------------THLPKYATSLT-NTQE 367
                                                          P Y  S   N   
Sbjct: 368 QEQFNLHRNHVETEFSINDQNQISTDLLTEFNQSRPQAVQYNSVPQEPSYNGSFQLNNAL 427

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
           K +L   R         D  +    +    ++    + LGIA AQ+H  YI++Q T+GL+
Sbjct: 428 KTYLAPLRDEKTSFEHEDTSSVKNGDLEGFKTRVDEFPLGIAIAQLHGIYILAQNTEGLI 487

Query: 428 IVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           IVD HAAHER++ ++M+  ++  +  TSQ LL P+++ +   +   I E    L RLG++
Sbjct: 488 IVDMHAAHERILLQQMKSAWDKPEFWTSQQLLIPKVVSITRMQAVRIEELQSQLQRLGLE 547

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
             ++G   + +R +PAIL K +  +L+ ++++++  +     L  + + +LA MAC+G++
Sbjct: 548 INQYGDEQVIVRGVPAILQKADFDRLIPELLNDLDPNDEARGLLQKRDELLAGMACHGAV 607

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ R++   EMN LLR+ME+   +SQCNHGRPT+    L  ++KLF R
Sbjct: 608 RAHRQLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLHQLDKLFAR 655


>gi|254374003|ref|ZP_04989485.1| hypothetical protein FTDG_00161 [Francisella novicida GA99-3548]
 gi|151571723|gb|EDN37377.1| hypothetical protein FTDG_00161 [Francisella novicida GA99-3548]
          Length = 600

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 199/596 (33%), Positives = 326/596 (54%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++     V    GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREVVPAAHV---TGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIAFKLIHNGKEVKDLLIAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L+ID R+VDVNV
Sbjct: 247 PRFNRARADMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYREVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI     +++ +          Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAI----TTSTDIKVSSHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T+ L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTSLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVEDGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENVE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI +R  P  +  K+I  L+ +I  E+  SS T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILVRSTPIYVKDKDIQTLITNIATELTSSSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSISEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|319794619|ref|YP_004156259.1| DNA mismatch repair protein mutl [Variovorax paradoxus EPS]
 gi|315597082|gb|ADU38148.1| DNA mismatch repair protein MutL [Variovorax paradoxus EPS]
          Length = 631

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 200/621 (32%), Positives = 325/621 (52%), Gaps = 34/621 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L +++I+QIAAGE++ERP+  ++EL++N+LDA +S+V   +A GG     + D+G 
Sbjct: 15  PIRELPDELISQIAAGEVVERPASVVRELLDNALDAGASQVTVRLASGGVRLISVEDDGL 74

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+ +A++RH TSKI+  DD   + T GFRGEAL +I A++ L+++SR    ++  
Sbjct: 75  GIPREELTVALRRHATSKIASLDDLETVGTMGFRGEALAAINAIAELSILSRFGGADSAF 134

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RPVA + GT VEVR+LFF  PAR  FLK++  E     + +RR A+A 
Sbjct: 135 ALDGRTGEL---RPVARSVGTTVEVRELFFATPARRKFLKTDATELAHCIEAVRRHALAR 191

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F+         +           +R++  + +DF+  +V +      + + G  GI
Sbjct: 192 PEVGFSVWHDGKLVEQWRAA---DAREQRLADALSDDFVAKSVAVEHLGGVVRVVGRAGI 248

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   +Q + ++NGR V+DK +   +R+AY + +   R P+  L LEIDP +VDVNV
Sbjct: 249 PDAARSRGDQQFFYVNGRFVRDKVLSHAVRSAYEDVLHGQRQPIYALYLEIDPSRVDVNV 308

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR+   +   +  +I+ A+       +   S      F +   P++      
Sbjct: 309 HPTKIEVRFRDGREVHQAVRHAIEDALAAPRAGDAVAPSGPPEPFFRETKLPESASWSQP 368

Query: 360 TSLTNTQEK---LFLQENRLSTNDLLPSDDPTYSEDN----------------------- 393
                 +E+    F       T++L  + D T S                          
Sbjct: 369 AMNFVARERGAGDFEAMWPRRTDELGHAPDSTPSHWPLTGAAPMAFRAPVGLPPSPAEDA 428

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                +    + LG A AQ+   YI+++ T GLV+VD HAAHER+++E+++   +   IT
Sbjct: 429 SAPAATNDEAWPLGRALAQLQGIYILAENTQGLVVVDMHAAHERIVYERLKTQLDGAAIT 488

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LL P        E A      E L  LG++   F    +A+R +P  L+  +  +L 
Sbjct: 489 SQPLLIPATFAATPQEVATAEACAEVLPTLGLEITAFSARTLAVRAVPGTLADGDPVELA 548

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           R ++ E+     +  +Q     +L+TMAC+G++R+ RK+   EMN LLR+ME    S QC
Sbjct: 549 RSVLAELGQHDASTVVQRAQNELLSTMACHGAVRANRKLTIDEMNALLRQMEATERSDQC 608

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
           NHGRPT+ +L + +++ LF R
Sbjct: 609 NHGRPTWRQLSIRELDTLFMR 629


>gi|218532518|ref|YP_002423334.1| DNA mismatch repair protein MutL [Methylobacterium chloromethanicum
           CM4]
 gi|218524821|gb|ACK85406.1| DNA mismatch repair protein MutL [Methylobacterium chloromethanicum
           CM4]
          Length = 661

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/646 (36%), Positives = 363/646 (56%), Gaps = 56/646 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  +E  I GGG+   ++ D+G GM
Sbjct: 16  RRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARSIEVAIEGGGRRLIRVIDDGIGM 75

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
             +++ +AV+RH TSK+ D D + I + GFRGEALPSIGAVS LT+ SR      G  + 
Sbjct: 76  GPDDLALAVERHATSKLPDGDLTRIGSLGFRGEALPSIGAVSRLTITSRTADGE-GVSLT 134

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRP     GT +EV +LF   PARL FLK+++ ET  +++++RR+A+A P++
Sbjct: 135 LDSGVKGPVRPAPAARGTRIEVTELFAATPARLKFLKTDRAETAAVSEILRRLAVAQPQI 194

Query: 183 SFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            FT  T   +        +        R+  V+G DF  NAV ++       L G+ G+P
Sbjct: 195 RFTLRTESGSPTVFPAESEPGPAALLRRLGAVLGPDFPGNAVPVDMAREGFALAGHVGLP 254

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+RG A+  Y  +NGR V+D+ +L  +R AYA+T+   R+PV+ L L  DP  VDVNVH
Sbjct: 255 TFHRGAASHIYFVVNGRPVRDRLLLGAVRGAYADTMSSDRHPVLALHLTCDPALVDVNVH 314

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD------------ 348
           PAK+ +RFR P ++R  I+ +I +A+ + G  +SS  ++  + +                
Sbjct: 315 PAKTELRFREPGLVRALIVSAIHEALRRAGARSSSTGTQAALDALRAGAGMGGAPPMAGV 374

Query: 349 -----------------------------NAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
                                         AP  + P    + T            L + 
Sbjct: 375 GRFAVHSGASTASALNPRPASRLFSGPSVAAPAGYRPALRPAFTEDHPGFAETPQALFSA 434

Query: 380 DLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           DL P       +     E E+    + LG A AQIH+ YI++QT DG+V+VDQHAAHERL
Sbjct: 435 DLAPPGADLRPDPEAGSEAETHPETHPLGAARAQIHETYIVAQTRDGIVLVDQHAAHERL 494

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           ++E+++++     + +Q LL P+++++   E   ++E   +L RLG+  E FGP A+ +R
Sbjct: 495 VYERLKRERAGGGVLAQGLLIPDVVEMAPEEADRLVEAAPELERLGLTLEAFGPGAVLVR 554

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDS----------STTYTLQDRIENILATMACYGSIRS 548
            +P+ L+  ++  L+ D++D +  S               +  R++ IL+ M+C+GSIR+
Sbjct: 555 SVPSALAGGSVKGLVLDVLDALAASGVEEGGPAGAGDPDPVSRRLDAILSRMSCHGSIRA 614

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           GR+++  EMN LLREME  P S  CNHGRPTF+ L L+DIE+LFGR
Sbjct: 615 GRRLKPEEMNALLREMEATPLSGSCNHGRPTFVSLGLADIERLFGR 660


>gi|208778969|ref|ZP_03246315.1| DNA mismatch repair protein MutL [Francisella novicida FTG]
 gi|208744769|gb|EDZ91067.1| DNA mismatch repair protein MutL [Francisella novicida FTG]
          Length = 600

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 200/596 (33%), Positives = 324/596 (54%), Gaps = 10/596 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+IERPS  +KELIEN++DA ++++   I  GGKS  +I DNG 
Sbjct: 10  QIKILPESLANQIAAGEVIERPSSVVKELIENAIDAGATQIIIEIQEGGKSLIRIRDNGK 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+  H TSK+   D+   + + GFRGEAL SI +V+ L ++S+   +    
Sbjct: 70  GIAQQDLKLALAPHATSKVYTLDELEAVASMGFRGEALASIASVAKLKIISKHQNSQDAW 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++     V    GT +EV +LF+  PAR  FLK +  E   I D++++  + Y
Sbjct: 130 QINNQTREVVPAAHV---TGTTIEVSELFYNTPARRKFLKKDNTEFLHIYDLLKKYMLCY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + F           +           R+  +   +FI NA+ ++++  +  L G+   
Sbjct: 187 FGIDFKLIHNGKEVKDLLIAEEVQLKYNRVLDLYSREFIENAIYVDKQVGDAHLWGWVAS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR  A+    +INGR ++DK +   I+ AY + +   RYP  +L L+ID R+VDVNV
Sbjct: 247 PRFNRARADMQSFYINGRIIKDKIVSHAIKNAYKDVMYGNRYPAFLLYLDIDYREVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFRN   I +F+  +I KAI     +++ +          Q+     + P   
Sbjct: 307 HPAKSEVRFRNQKFIYDFLFGNINKAI----TTSADIKVSSHQQVISQERQTSNNNPLNI 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +++        +E   +T+ L    +   S++N+     ++    LG A  QIH  YI+
Sbjct: 363 GNMSLDISIDDEKEESSNTSLLDKYFNNQNSQENEIRISQQSKSNGLGQAICQIHGIYIL 422

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDE 478
           SQ  DG+V+VD HAAHER+++E+M++ +++     +  L  P    L     A + E+ E
Sbjct: 423 SQVEDGVVLVDMHAAHERILYEEMKKTWHANADKFKQNLLMPLTCQLSSSIVAAVDENAE 482

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              +LG +      +AI IR  P  +  K+I  L+  I  E+  SS T +++  + +ILA
Sbjct: 483 VFKKLGFEISVVADDAILIRSTPIYVKDKDIQTLITSIATELTSSSKTKSVEFYLNHILA 542

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T++C+ ++R+  K+   EMN LLR+ME   NS QCNHGRPT++KL  + ++  F R
Sbjct: 543 TVSCHAAVRANDKLSIPEMNHLLRQMETVENSGQCNHGRPTWVKLNFAQLDSFFLR 598


>gi|116618669|ref|YP_819040.1| DNA mismatch repair protein MutL [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097516|gb|ABJ62667.1| DNA mismatch repair protein MutL [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 648

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 309/636 (48%), Gaps = 46/636 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I +LS  + NQIAAGE+IERP+  +KEL+EN++DA +++++ ++   G+S  ++ DNG
Sbjct: 1   MRIHELSNLLANQIAAGEVIERPASVVKELVENAIDAGATQIDVIVEEAGESLIRVVDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+A  RH TSKIS+  D  NI + GFRGEALPSI A+S +TL +      +G
Sbjct: 61  EGINPEDVPLAFTRHATSKISNRHDLFNIMSLGFRGEALPSIAAISDVTLNTTTQDAPSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               I G K  S  P     GT+V VRDLF+  PARL +LK  Q E + I D++ R+A++
Sbjct: 121 IMYHIKGGKQVSATPANGRRGTVVSVRDLFYNTPARLKYLKRPQTELSRIADIMNRIALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  V+FT +    N  + N    +GN    I+ + G D       +  + ++  + G+  
Sbjct: 181 YTNVAFTVTADGRNILQTN---GDGNQQRVIAAIYGRDVAQKMRAITGEDDDFNITGFVS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P   RG+ +   + +NGR +++  + + +   Y   + +GR+P+ V+ +  DP  VDVN
Sbjct: 238 LPELTRGSRDYLTILVNGRFIKNFSVSNAVIRGYGSKLMVGRFPMGVININTDPLLVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLP 356
           VHP K+ IR      +   II +I+     + +   +   L  +  ++  +  APK   P
Sbjct: 298 VHPQKAEIRLSKEAELSALIIDTIKSCFADENLIPDAYENLYGQAQTNKIEPPAPKQVAP 357

Query: 357 KYATSLTNTQE-----------------------KLFLQENRLSTNDLLPSDDPTYSEDN 393
                +  T                           F Q+     N  +  D+ T     
Sbjct: 358 WAKPDMEQTIAINTGMDSNEVVINQEADLMNHAVNEFTQKYAHEPNLPIFDDEITVQVSE 417

Query: 394 D---------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           D                +   + + +       Q+H  ++ +Q+++G  ++DQHAA ER+
Sbjct: 418 DISSYNKPDIPTQEELDISPKKPSGFPSLEYIGQMHGTFLFAQSSEGFYLIDQHAAQERV 477

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R++        Q +L P  I+    +   I + + +L  +G+  E FGP  + +R
Sbjct: 478 KYEYYRKEIGQVGTDKQRMLVPITINYSVADMLKIADKEAELEAIGLTLEPFGPTTVIVR 537

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    K    + +++++D I+      T+ +  E     M+C  S+R+   +  ++  
Sbjct: 538 EHPTWFEKGQETETIKEMVDWILRDGN-LTVAEFRERTAIMMSCKRSVRANMHLSDLQAR 596

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL  +    N   C HGRP      L+++EK+F R
Sbjct: 597 TLLESLASTENPYNCPHGRPVVTSFTLTEMEKMFKR 632


>gi|319761780|ref|YP_004125717.1| DNA mismatch repair protein mutl [Alicycliphilus denitrificans BC]
 gi|317116341|gb|ADU98829.1| DNA mismatch repair protein MutL [Alicycliphilus denitrificans BC]
          Length = 658

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 204/637 (32%), Positives = 336/637 (52%), Gaps = 51/637 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA +++V   +  GG     + D+G 
Sbjct: 27  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGATQVTVRLLAGGVRLIAVEDDGM 86

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKI +  D  ++ T GFRGEAL +I +VS + L+SR  Q  +  
Sbjct: 87  GIPRDELPIALRRHATSKIGNLHDLESVATMGFRGEALAAIASVSEMALLSRTAQQASAF 146

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 147 MLDARSGEL---RPAARSQGTTVEVKELFFSTPARRKFLKTDATELAHCVEAVRRHALAR 203

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN------FPERISQVIGEDFINNAVELNEKSNEITL 233
           P V F          +      +G          R++ V+GEDFI  +V ++ +S  IT+
Sbjct: 204 PDVGFAIWHEGKLVEQWRATLAHGEPADAQALERRLADVLGEDFIRESVPVHLRSGAITV 263

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   + PV  L +++DP+
Sbjct: 264 TGRAGLPDAARSRADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGQKQPVYALYVQMDPQ 323

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           +VDVNVHP K  +RFR+   +   +  +++ A+        + +     ++   D+  K 
Sbjct: 324 RVDVNVHPTKIEVRFRDSREVHQAVRHAVENALAAPRAQALASVPVAAAAAPASDSGRK- 382

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH---------- 403
              ++   +   Q  +  +E        L +   T +    P   + AT           
Sbjct: 383 ---QFQLPIWQAQAAIRFEERAGHKVSDLQALWGTPAAAPQPAMPAAATPPAAIEAPPLP 439

Query: 404 -------------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                                    + LG A AQIH  YI++++  GLV+VD HAAHER+
Sbjct: 440 AAAAAAAAAAAAAAASVPAAPTESAWPLGRAVAQIHGVYILAESAQGLVVVDMHAAHERI 499

Query: 439 IFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           ++E+++   +   ++ SQ LL P        E A    H + L  LG++   F P  +A+
Sbjct: 500 VYERLKAQVDQGARLASQPLLIPATFAATPEEVATAESHADTLALLGLEIVPFSPRTLAV 559

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           R +P  L++ N  +L R ++ E+     +  +Q     ILATMAC+G++R+ RK+   EM
Sbjct: 560 RAVPNTLAQGNPVELARSVLAELGQHDASTVVQRARNEILATMACHGAVRANRKLTIDEM 619

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N LLR+ME    S QCNHGRPT+ +L + +++ LF R
Sbjct: 620 NALLRQMEVTERSDQCNHGRPTWRQLTVKELDALFLR 656


>gi|163853662|ref|YP_001641705.1| DNA mismatch repair protein MutL [Methylobacterium extorquens PA1]
 gi|163665267|gb|ABY32634.1| DNA mismatch repair protein MutL [Methylobacterium extorquens PA1]
          Length = 687

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/647 (36%), Positives = 364/647 (56%), Gaps = 57/647 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  +E  I GGG+   ++ D+G GM
Sbjct: 41  RRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARSIEVAIEGGGRRLIRVVDDGIGM 100

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
             +++ +AV+RH TSK+ D D + I + GFRGEALPSIGAVS LT+ SR      G  + 
Sbjct: 101 GPDDLALAVERHATSKLPDGDLTRIGSLGFRGEALPSIGAVSRLTITSRTADGE-GVSLT 159

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRP   + GT +EV +LF   PARL FLK+++ ET  +++++RR+A+A P++
Sbjct: 160 LDSGVKGPVRPAPASRGTRIEVTELFAATPARLKFLKTDRAETAAVSEILRRLAVAQPRI 219

Query: 183 SFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            FT  T   +        +        R+  V+G DF  NAV ++       L G+ G+P
Sbjct: 220 RFTLRTESGSPTVFPAESEPGPAALLRRLGAVLGPDFPGNAVPVDMAREGFALAGHVGLP 279

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+RG A+  +  +NGR V+D+ +L  +R AYA+T+   R+PV+ L L  DP  VDVNVH
Sbjct: 280 TFHRGAASHIHFVVNGRPVRDRLLLGAVRGAYADTMSSDRHPVLALHLTCDPALVDVNVH 339

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD------------ 348
           PAK+ +RFR P ++R  I+ +I +A+ + G  +SS  ++ ++ +                
Sbjct: 340 PAKTELRFREPGLVRALIVSAIHEALRRAGARSSSTGTQAVLDALRAGAGMGSAPPMAAG 399

Query: 349 ------------------------------NAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                                          AP  + P    + T            L +
Sbjct: 400 VGRFAVHSGASTASALNPRPASRLFSGPSVAAPAGYRPAPRPAFTEDHPGFAETPQALFS 459

Query: 379 NDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            DL P       E     E E+    + LG A AQIH+ YI++QT DG+V+VDQHAAHER
Sbjct: 460 ADLAPPGADLRPEPEAVSEAETHPEAHPLGAARAQIHETYIVAQTRDGIVLVDQHAAHER 519

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L++E+++ +     + +Q LL P+++++   E   ++E   +L RLG+  E FGP A+ +
Sbjct: 520 LVYERLKSERAGGGVLAQGLLIPDVVEMAPEEADRLVEAAPELERLGLTLEAFGPGAVLV 579

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDS----------STTYTLQDRIENILATMACYGSIR 547
           R +P+ L+  ++  L+ D++D +  S               +  R++ IL+ M+C+GSIR
Sbjct: 580 RSVPSALAGGSVKGLVLDVLDALAASGVEEGGPAGAGDPDPVSRRLDAILSRMSCHGSIR 639

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +GR+++  EMN LLREME  P S  CNHGRPTF+ L L+DIE+LFGR
Sbjct: 640 AGRRLKPEEMNALLREMEATPLSGSCNHGRPTFVSLGLADIERLFGR 686


>gi|157804273|ref|YP_001492822.1| DNA mismatch repair protein [Rickettsia canadensis str. McKiel]
 gi|166232104|sp|A8F0A4|MUTL_RICCK RecName: Full=DNA mismatch repair protein mutL
 gi|157785536|gb|ABV74037.1| DNA mismatch repair protein [Rickettsia canadensis str. McKiel]
          Length = 610

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/611 (40%), Positives = 376/611 (61%), Gaps = 18/611 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S+++  ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKINIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+ + DF  IHTFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKLDESDFLKIHTFGFRGEALPSIAAISKMLITSKKRGTDKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     +     N GT +E+RDLFF  PARL FL++++ E  +  D+++++A+A+
Sbjct: 121 QIKLIGGNEKQITISVHNEGTKIEIRDLFFATPARLKFLRADKTELAVTVDIVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P++SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K  + ++ GYT
Sbjct: 181 PEISFSLTNDSKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKILDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+IDP+ VDV
Sbjct: 241 SIPTYNRASSEDQFLFINNRPVKDKLLQVALRVAYQDYLARDRYPLCAIFLQIDPQFVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F      K     
Sbjct: 301 NVHPAKAEVRFHDPNYVRNLLIEAIKNALANKSHVTSTTIASDTLKLFKNPLINKQPTIN 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPT-----------YSEDNDPVEESEATHYQL 406
              ++ N++   +   +  +T  +L +                 E  + +E  +  H Q 
Sbjct: 361 KEVNV-NSKSVDYRSYSSANTPKILQNHICQKLIDTLPHAKVEQEVENRIEHKQQIHKQY 419

Query: 407 --GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
             G A AQ+H  YIISQT D +VI DQHAAHERL +EK++      ++  Q LL PEI++
Sbjct: 420 KLGAAKAQLHTTYIISQTEDSIVITDQHAAHERLGYEKIKSYIKMDELIKQRLLIPEIVE 479

Query: 465 LL-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           L  E     + +H E L +LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D 
Sbjct: 480 LPNEKRADCLYDHREKLSKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDF 539

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           S    L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME  P S QCNHGRPT+I+L
Sbjct: 540 SENVALMELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTPFSGQCNHGRPTYIEL 599

Query: 584 KLSDIEKLFGR 594
           KL DIE+LFGR
Sbjct: 600 KLKDIERLFGR 610


>gi|296132999|ref|YP_003640246.1| DNA mismatch repair protein MutL [Thermincola sp. JR]
 gi|296031577|gb|ADG82345.1| DNA mismatch repair protein MutL [Thermincola potens JR]
          Length = 627

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 180/628 (28%), Positives = 296/628 (47%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L +   N+IAAGE++ERP+  IKEL+EN+LDA SS++E  I+ GG     + DNG 
Sbjct: 3   KIKILDDFTANKIAAGEVVERPASVIKELVENALDAGSSKIEIQISRGGLDKITVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A  RH TSKI +  D   I T GFRGEALPSI AVS + + +RP     GA
Sbjct: 63  GMDREDARLAFHRHATSKIRNDADLDAIATLGFRGEALPSIAAVSTVEVRTRPHNEVCGA 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G KI     +    GT + V +LF  +PARL  +KS  +E   I+DV+ ++A+AY
Sbjct: 123 RLIVEGGKIVKDEDIGCPAGTTITVSNLFANVPARLKNIKSVSLEAGHISDVVSKLAVAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF+        +K    S NG+  + I+ + G +     + +N + + I + GY   
Sbjct: 183 PEVSFSLQHDNRFLFK---TSGNGDMLDIIASLYGTETARALLPINAERDGIGINGYIAR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  R   N     +N R V+ + +   +   Y   I  GRYPV  L + +    +D NV
Sbjct: 240 PSVTRSTRNHQTFIVNRRIVKSRPLSQALEQGYHSLIMTGRYPVAFLNIHLPYNLIDPNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HPAK  +R      I + +  +++ A++   +   + +  +  S     N  +       
Sbjct: 300 HPAKMEVRLFVLDKISDLLSSAVKVALSSNTLIPETKIPVEKPSGIQNRNQAQYVQQFLD 359

Query: 353 -----------------------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                                    LP  + +     E     +       L    D   
Sbjct: 360 VDEGHYHGKQAECSLVKEGSPVLAELPDRSIADEPQDEPQKEPQKEPQDIPLNMLLDLPR 419

Query: 390 SEDNDPVEESEATHYQL--GIACAQIHQNYIISQTTD-GLVIVDQHAAHERLIFEKMRQD 446
               D           +       QI   YI++Q  + GL ++DQHAAHER+++EK  Q 
Sbjct: 420 RISLDTPYNYFPKDKVIAGLRPIGQIDCTYIVAQGREAGLYLIDQHAAHERILYEKNMQV 479

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             +    SQ L  P+ I+L   E  +++ +  +   +G   E FG ++  +R +P     
Sbjct: 480 PTTN--YSQLLAIPQHIELTHLEAQVLITNILEFQAIGFVIEHFGGDSFLLRGVPGGFPP 537

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               ++  D++D    +    T ++  E+++  M+C  +I++G ++   +M +LL ++  
Sbjct: 538 GKEKKIFLDLLDYFFSNQHKLTNKELREDLIIMMSCKAAIKAGDRLLQGQMEKLLADLSN 597

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                 C HGRPT I +   ++EK+F R
Sbjct: 598 TELPYTCPHGRPTVIHISGYELEKMFKR 625


>gi|311104119|ref|YP_003976972.1| DNA mismatch repair protein MutL [Achromobacter xylosoxidans A8]
 gi|310758808|gb|ADP14257.1| DNA mismatch repair protein MutL [Achromobacter xylosoxidans A8]
          Length = 650

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 205/650 (31%), Positives = 336/650 (51%), Gaps = 64/650 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+  +KE++EN++DA    +E  + GGG     +TD+G 
Sbjct: 6   SILALPDLLISQIAAGEVIERPASVLKEILENAIDAGGRAIEVRLEGGGIRRIAVTDDGG 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A+ RH TSKI    +  ++ + GFRGEAL SI +V+ +T++SR        
Sbjct: 66  GIPPEELPLALARHATSKIRSLNELESVASMGFRGEALASIASVAQVTIISRTRDGEHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P +  PGT V+VR LF  +PAR  FL+SE  E     D + R+A+A+
Sbjct: 126 QIDAGSMQV---SPASGPPGTTVDVRQLFDAVPARRKFLRSEATEFGHCVDAMERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F        + +           +RI  V+G +F  + + L+     ++L G    
Sbjct: 183 PQIAFRLFHHDRAQRQWLPAEPP----QRIRDVLGAEFAEHGLLLSHSVGTVSLAGMITR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R AYA+ +   R P  VL L+IDP  VDVNV
Sbjct: 239 PTAARARADRQYLYVNGRYVRDRTVSHALRAAYADVLHGDRQPAYVLFLDIDPAAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS----FHQDNAPKTHL 355
           HPAK  +RFR+   +  F+  ++ + + + G +++ V   +   +    F     P    
Sbjct: 299 HPAKHEVRFRDSGAVHRFVSHAVGQTLAQTGGASAVVAPAQNDDADDAGFETVARPAASA 358

Query: 356 -------------------------------------PKYATSLTNTQEKLFLQENRLST 378
                                                P  A    +TQ    L       
Sbjct: 359 EGAAPQAAPYAPAASPMADTPRPAYNGGGLSSSYGLRPSPAPQRAHTQVPFRLHAEPAGI 418

Query: 379 NDLLPSDDPTYSEDNDPVEESEAT--------------HYQLGIACAQIHQNYIISQTTD 424
                       +++   + +                  + LG+A AQ+H  YI++QT  
Sbjct: 419 PAADWQSLYRPLDEDSAAKTAPLREPAPAPATALPADEEHPLGMALAQLHGIYILAQTRR 478

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           G+V+VD HAAHER+++E+++   ++  +  Q LL P +    E + AL+ E ++ L+ LG
Sbjct: 479 GIVLVDMHAAHERVVYEQLKHALDARSLPRQDLLVPVVFHAQEKDVALVEEFEDQLNELG 538

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
            +    GP +IA+R +PAIL++ +I  L R ++ ++     +  L ++   +L+TMAC+G
Sbjct: 539 FEMRPSGPTSIAVRSVPAILARGDIETLARAVLRDLGAVGVSRLLTEQRNELLSTMACHG 598

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           S+R+ RK+   EMN LLR+ME    + QCNHGRPT+I+  +SD++KLF R
Sbjct: 599 SVRANRKLTIEEMNGLLRQMEATERADQCNHGRPTWIQWSVSDLDKLFLR 648


>gi|165933924|ref|YP_001650713.1| DNA mismatch repair protein [Rickettsia rickettsii str. Iowa]
 gi|189030407|sp|B0BVP7|MUTL_RICRO RecName: Full=DNA mismatch repair protein mutL
 gi|165909011|gb|ABY73307.1| DNA mismatch repair protein [Rickettsia rickettsii str. Iowa]
          Length = 610

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/610 (39%), Positives = 372/610 (60%), Gaps = 16/610 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++DA S++++ ++   GK+   I+D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDASSTKIDIILERAGKNLIIISDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK  + DF NI+TFGFRGEALPSI A+S + + S+    +   
Sbjct: 61  IGMTDKELEIAVERHTTSKFDESDFLNINTFGFRGEALPSIAAISKMLITSKKRDADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     V     N GT +E+RDLFF  PARL FL++++ E      V++++A+A+
Sbjct: 121 QIKLIGGNEKQVTISVHNEGTKIEIRDLFFATPARLKFLRADKTELAATVGVVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF+ +    N  K+  Q+ +   N  +RI  VIG+DFI NA  ++ K+ + ++ GYT
Sbjct: 181 PKISFSLTHDGKNLLKLKGQNKDAETNLKQRIIDVIGDDFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PT+NR ++   ++FIN R V+DK +   +R AY + +   RYP+  + L+I+P+ VDV
Sbjct: 241 SSPTYNRASSEDQFLFINNRPVKDKLLQIALRVAYQDYLARDRYPICAIFLQINPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKT 353
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   TS+ ++   +  F        +P +
Sbjct: 301 NVHPAKAEVRFHDPDYVRNLLIEAIKNALTNKSHVTSTTIASDALELFKNPLVNKQSPVS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDNDPVEESEATHYQL 406
            +    +   + +       N +  N       D L         +N    E +      
Sbjct: 361 KVINVNSKSADYRPTTHSILNTVPQNHVCQKLIDTLSHAKIEQEVENRIEHEQQIRKQYK 420

Query: 407 -GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            G A AQ+H  YIISQT D +VI DQHAAH+RL +EK++    + ++  Q LL PEI++L
Sbjct: 421 LGAAKAQLHTTYIISQTEDSIVITDQHAAHKRLGYEKIKDYLKTEELIKQRLLIPEIVEL 480

Query: 466 L-EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E +   + +H E L++LG+  E+FG  +I + EIP IL   N+ +L++D+ D + D  
Sbjct: 481 PNEKKADCLYDHREKLYKLGLTLEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFG 540

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               L + IE++  T AC+ SIR+GRK+ + EMN LLR+ME    S QCNHGRPT+I+LK
Sbjct: 541 KNIALTELIEHVTETYACHYSIRAGRKLSADEMNALLRQMENTLLSGQCNHGRPTYIELK 600

Query: 585 LSDIEKLFGR 594
           L DIE+LFGR
Sbjct: 601 LKDIERLFGR 610


>gi|254563596|ref|YP_003070691.1| DNA mismatch repair protein mutL [Methylobacterium extorquens DM4]
 gi|254270874|emb|CAX26879.1| DNA mismatch repair protein mutL [Methylobacterium extorquens DM4]
          Length = 662

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/647 (36%), Positives = 364/647 (56%), Gaps = 57/647 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  +E  I GGG+   ++ D+G GM
Sbjct: 16  RRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARSIEVAIEGGGRRLIRVVDDGIGM 75

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++++ +AV+RH TSK+ D D + I + GFRGEALPSIGAVS LT+ SR      G  + 
Sbjct: 76  GADDLALAVERHATSKLPDGDLTRIGSLGFRGEALPSIGAVSRLTITSRTADGE-GVSLT 134

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRP     GT +EV +LF   PARL FLK+++ ET  +++++RR+A+A P++
Sbjct: 135 LDSGVKGPVRPAPAARGTRIEVTELFAATPARLKFLKTDRAETAAVSEILRRLAVAQPQI 194

Query: 183 SFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            FT  T   +        +        R+  V+G DF  NAV ++       L G+ G+P
Sbjct: 195 RFTLRTESGSPTVFPAESEPGPAALLRRLGAVLGPDFPGNAVPVDMAREGFALAGHVGLP 254

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+RG A+  +  +NGR V+D+ +L  +R AYA+T+   R+PV+ L L  DP  VDVNVH
Sbjct: 255 TFHRGAASHIHFVVNGRPVRDRLLLGAVRGAYADTMSSDRHPVLALHLTCDPALVDVNVH 314

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD------------ 348
           PAK+ +RFR P ++R  I+ +I +A+ + G  +SS  ++  + +                
Sbjct: 315 PAKTELRFREPGLVRALIVSAIHEALRRAGARSSSTGTQAALDALRAGAGMGSAPPMAAG 374

Query: 349 ------------------------------NAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                                          AP  + P    + T            L +
Sbjct: 375 MGQFAVHSGASTASALNPRPASRLFSGPSVAAPAGYRPAPRPAFTEDHPGFAETPQALFS 434

Query: 379 NDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            DL P       E     E E+    + LG A AQIH+ YI++QT DG+V+VDQHAAHER
Sbjct: 435 ADLAPPGADLRPEPEMLSEAETHPETHPLGAARAQIHETYIVAQTRDGIVLVDQHAAHER 494

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L++E+++++     + +Q LL P+++++   E   ++E   +L RLG+  E FGP A+ +
Sbjct: 495 LVYERLKRERAGGGVLAQGLLIPDVVEMAPEEADRLVEAAPELERLGLTLEAFGPGAVLV 554

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDS----------STTYTLQDRIENILATMACYGSIR 547
           R +P+ L+  ++  L+ D++D +  S               +  R++ IL+ M+C+GSIR
Sbjct: 555 RSVPSALAGGSVKGLVLDVLDALAASGVEEGGPAGAGDPDPVSRRLDAILSRMSCHGSIR 614

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +GR+++  EMN LLREME  P S  CNHGRPTF+ L L+DIE+LFGR
Sbjct: 615 AGRRLKPEEMNALLREMEATPLSGSCNHGRPTFVSLGLADIERLFGR 661


>gi|320160707|ref|YP_004173931.1| DNA mismatch repair protein MutL [Anaerolinea thermophila UNI-1]
 gi|319994560|dbj|BAJ63331.1| DNA mismatch repair protein MutL [Anaerolinea thermophila UNI-1]
          Length = 586

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 193/598 (32%), Positives = 316/598 (52%), Gaps = 20/598 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E++ +QIAAGE++ERP+  +KELIEN+LDA + ++   +   G+   ++ D+G
Sbjct: 1   MPIHLLPEEVASQIAAGEVVERPASVVKELIENALDAHARQIVVRVENAGRRAIEVADDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +AV RH TSK+  ++D   I T GFRGEAL SI +VSH +L+SRP   +  
Sbjct: 61  DGIPQSELALAVMRHATSKLQTAEDLFRIATLGFRGEALASIASVSHFSLVSRPAHQSVA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A+I + G KI +V  V    GT+V V DLFF +PARL FLK +Q E   I  ++ R A+A
Sbjct: 121 ARIRVDGGKIGTVEVVGAPVGTLVRVEDLFFNVPARLKFLKRDQTERQQIDALVTRYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           YP+V F      +  ++    + NGN  E ++Q+   +     +E+  +   +++ G+T 
Sbjct: 181 YPQVRFQLFHDGTPIFQ---TTGNGNRREVLAQLYDVEISRQMLEVEYEDEMVSVSGFTS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R N  +   F+NGR VQD  + + +  AY   + +GRYP+ +L + + P +VDVN
Sbjct: 238 PVGLTRSNRKEITFFVNGRWVQDTALSTALLQAYHTLLMVGRYPMAILFINLHPEEVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-QDNAPKTHLPK 357
           VHP K+ +RFRNP  + + + +++++++       S V               P   + +
Sbjct: 298 VHPTKAEVRFRNPDRVFSAVSRAVRRSLMISNPVPSVVPPSVWQRPLSTPQIDPAWEMSR 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
            A +L  T E+        +  +L  +          P+               Q+   Y
Sbjct: 358 QAQNLWTTSEQTGETTVSPTPENLPQATQSPLPSGVLPL----------LRLVGQVAMAY 407

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           ++++  DGL ++DQHAAHER++FE+         I +Q LL P ++ L   +  L+ +  
Sbjct: 408 LVAEGPDGLYLIDQHAAHERVLFERF-IQKKGEGIPAQALLEPALVHLSPSQARLLEDEV 466

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           + L+RLG   E FGP+   +  IPA+LS  +  Q +R ++++  +  T   LQ  +E  L
Sbjct: 467 DTLNRLGFHIEPFGPSTFRVSAIPALLSGADPVQAVRAVVEDFEEDET--PLQSEVEARL 524

Query: 538 ATMAC-YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               C   ++++G+ +   E   LLR++E   +   C HGRPT I L    +E+ FGR
Sbjct: 525 IARICKRTAVKAGQVLSPEEQRALLRDLEACQSPRTCPHGRPTMIHLSADLLERQFGR 582


>gi|240141086|ref|YP_002965566.1| DNA mismatch repair protein mutL [Methylobacterium extorquens AM1]
 gi|240011063|gb|ACS42289.1| DNA mismatch repair protein mutL [Methylobacterium extorquens AM1]
          Length = 662

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/647 (36%), Positives = 365/647 (56%), Gaps = 57/647 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  +E  I GGG+   ++ D+G GM
Sbjct: 16  RRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARSIEVAIEGGGRRLIRVIDDGIGM 75

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++++ +AV+RH TSK+ D D + I + GFRGEALPSIGAVS LT+ SR      G  + 
Sbjct: 76  GADDLALAVERHATSKLPDGDLTRIGSLGFRGEALPSIGAVSRLTITSRTADGE-GVSLT 134

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +       VRP   + GT +EV +LF   PARL FLK+++ ET  +++++RR+A+A P++
Sbjct: 135 LDSGVKGPVRPAPASRGTRIEVTELFAATPARLKFLKTDRAETAAVSEILRRLAVAQPQI 194

Query: 183 SFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            FT  T   +        +        R+  V+G DF  NAV ++       L G+ G+P
Sbjct: 195 RFTLRTESGSPTVFPAESEPGPAALLRRLGAVLGPDFPGNAVPVDMAREGFALAGHVGLP 254

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+RG A+  +  +NGR V+D+ +L  +R AYA+T+   R+PV+ L L  DP  VDVNVH
Sbjct: 255 TFHRGAASHIHFVVNGRPVRDRLLLGAVRGAYADTMSSDRHPVLALHLICDPALVDVNVH 314

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN----------- 349
           PAK+ +RFR P ++R  I+ +I +A+ + G  +SS  ++  + +                
Sbjct: 315 PAKTELRFREPGLVRALIVSAIHEALRRAGARSSSTGTQAALDALRAGTGMGGAPPMAAG 374

Query: 350 -------------------------------APKTHLPKYATSLTNTQEKLFLQENRLST 378
                                          AP  + P    + T            L +
Sbjct: 375 VGRFAVHSGASTASALNPRPASRLFSGPSVAAPAGYRPAPRPAFTEDHPGFAETPQALFS 434

Query: 379 NDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            DL P       +     E E+    + LG A AQIH+ YI++QT DG+V+VDQHAAHER
Sbjct: 435 ADLAPPGADLRPDPEAGSEAETHPETHPLGAARAQIHETYIVAQTRDGIVLVDQHAAHER 494

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L++E+++++     + +Q LL P+++++   E   ++E   +L RLG+  E FGP A+ +
Sbjct: 495 LVYERLKRERAGGGVLAQGLLIPDVVEMAPEEADRLVEAAPELERLGLTLEAFGPGAVLV 554

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDS----------STTYTLQDRIENILATMACYGSIR 547
           R +P+ L+  ++  L+ D++D +  S               +  R++ IL+ M+C+GSIR
Sbjct: 555 RSVPSALAGGSVKGLVLDVLDALAASGVEEGGPAGAGDPDPVSRRLDAILSRMSCHGSIR 614

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +GR+++  EMN LLREME  P S  CNHGRPTF+ L L+DIE+LFGR
Sbjct: 615 AGRRLKPEEMNALLREMEATPLSGSCNHGRPTFVSLGLADIERLFGR 661


>gi|21674838|ref|NP_662903.1| DNA mismatch repair protein MutL [Chlorobium tepidum TLS]
 gi|25090732|sp|Q8KAX3|MUTL_CHLTE RecName: Full=DNA mismatch repair protein mutL
 gi|21648059|gb|AAM73245.1| DNA mismatch repair protein MutL [Chlorobium tepidum TLS]
          Length = 624

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 190/626 (30%), Positives = 314/626 (50%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L + + N+I+AGE+++RP+  +KELIENS+DA +SR+  +I   G+   QI DNG 
Sbjct: 3   SIARLPDIVANKISAGEVVQRPASVVKELIENSIDAGASRITVIIKDAGRQLVQIIDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM S+++ ++V+R  TSKIS  DD   + T GFRGEAL SI +VSH  L +R   N+ G 
Sbjct: 63  GMESDDVLLSVERFATSKISEVDDLDALRTLGFRGEALASISSVSHFELKTRKAGNSLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I + +P    PGT + VR+LFF +PAR  FLKS   E   I + ++   ++Y
Sbjct: 123 LLRSDGGVIETPQPAQCEPGTSIAVRNLFFNVPARRKFLKSNATEFKHIHETVKAFVLSY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ +         +         +  ER+S   GE F  + +E+ E+++ +T+ GY G 
Sbjct: 183 PEIEWRMMNDDEELFHFRT----SDVRERLSHFYGEGFGESLIEVTEENDYMTIGGYLGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P          Y FIN R +Q++ ++  ++ AY E +   + P  +L L +DP  VDVNV
Sbjct: 239 PGMMVRQKYDQYFFINRRLIQNRMLVQAVQQAYGELLEERQSPFALLFLGLDPSLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKY 358
           HPAK  +RF +   IR+ +   +++A+     S+ +  +     +   + + P+    K 
Sbjct: 299 HPAKLEVRFEDEKSIRSMVYPVVKRAVRTADFSSEASFAAPSAPTVSGEVDLPEVSSRKL 358

Query: 359 ATSL------------TNTQEKLFLQENRLS---TNDLLPSDDPTYSEDNDPVEE----- 398
           + S              N +   F   + +S    +  L +     S     V+E     
Sbjct: 359 SYSSFSGKASTTGDLYRNYRAGAFSAPSSVSPMLFDSSLETSLSAGSRPTPMVQESLLTP 418

Query: 399 ----------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                           +      Q+H  YII Q   GL+I+DQH AHER+++E+     N
Sbjct: 419 SVDQPDTGDGENPVAPEKEPKIWQLHNKYIICQIKTGLMIIDQHVAHERVLYERAIDIMN 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
                SQ LL P+ IDL   +  +  E  ++L+RLG     FG  ++ I  +P  +    
Sbjct: 479 EAAPNSQQLLFPQKIDLKPWQYEVFEEISDELYRLGFNIRPFGGMSVMIEGVPPDVRDGA 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              +L+D+I E  +++    L+ R +N+  + +C  +I +G+K+   EM  L+  +    
Sbjct: 539 EATILQDMIAEYQENAAKLKLEKR-DNLAKSYSCRNAIMTGQKLSVEEMRMLIDRLFATR 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
               C HGRP  I+L L +++++FGR
Sbjct: 598 MPYVCPHGRPVIIRLSLGELDRMFGR 623


>gi|229012952|ref|ZP_04170117.1| DNA mismatch repair protein mutL [Bacillus mycoides DSM 2048]
 gi|228748206|gb|EEL98066.1| DNA mismatch repair protein mutL [Bacillus mycoides DSM 2048]
          Length = 647

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 185/648 (28%), Positives = 303/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            ++I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLSIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPIGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHTKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
                                              Q+  P   L +   S   + + +  
Sbjct: 359 RESSMPNIVLPTGMDEKQEETTTVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSSKPVIE 418

Query: 372 QENR-----LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
           Q  R      S +D    ++           E             Q+H  YI +Q  +GL
Sbjct: 419 QTVREEKEWTSNDDDFELEELEEEVGEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|315640094|ref|ZP_07895217.1| DNA mismatch repair protein HexB [Enterococcus italicus DSM 15952]
 gi|315484141|gb|EFU74614.1| DNA mismatch repair protein HexB [Enterococcus italicus DSM 15952]
          Length = 656

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 178/649 (27%), Positives = 303/649 (46%), Gaps = 59/649 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++ ++   G    Q+ DNG
Sbjct: 1   MKIKELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDILLEDAGLKKIQVVDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++  A +RH TSKI    D   I T GFRGEALPSI +VS +T+ +       G
Sbjct: 61  EGIADEDVENAFKRHATSKIHHQADLFRIRTLGFRGEALPSIASVSEMTIETASQGATNG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + + G  I S +   +  GT + V +LFF  PARL ++K+ Q E   I D++ R+A++
Sbjct: 121 SIVHLQGGTILSHKMGPLRKGTKIVVENLFFNTPARLKYVKTFQTELANIGDIVNRLALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P V+F      +   KM   + NG+  + I+ + G       + +     +  ++GY  
Sbjct: 181 HPSVAFRLVHDGN---KMTQTAGNGDLKQTIAGIYGLQTAKKMLVIAADDLDFQIKGYIS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P   R N N   + INGR +++  +   I   Y   + +GR+P+ ++ + +DP  VDVN
Sbjct: 238 LPEVTRANRNYLSLIINGRFIKNYALNKAIIQGYGSKLMVGRFPIAIIEITMDPLLVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLP- 356
           VHP K  +R    T +   +  +I +A+ +  +  +    K+    F +     +T LP 
Sbjct: 298 VHPTKQEVRLSKETELTQLLKSAIVEALKEPSLIPNVGQQKEFKQRFQEKQTMEQTSLPL 357

Query: 357 ---------------------------------KYATSLTNTQEKLFLQENRLSTNDLLP 383
                                                +   TQ+ L     + ST +   
Sbjct: 358 TQANDKPLVYDAASGDFFVPGDTQKLEKVPPTDSVEPTYEATQQPLDTAAQQTSTENRTT 417

Query: 384 SDDPTYS------------------EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
                                     +    E+     +       Q+H  ++ +Q  DG
Sbjct: 418 IPKIAEELARFDETVHDTTAISVQMVEKMLHEKPSTQRFPELEYFGQMHGTFLFAQGEDG 477

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I+DQHAA ER+ +E  R+         Q L+ P +++    +   I+E  + L ++G+
Sbjct: 478 LYIIDQHAAQERIKYEYYREQIGEVSRDLQELIIPIVLEYPADDYLRIIEGKDTLEQVGL 537

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FG   + IR  P         Q+ +D+ID  + +    +++  +E     M+C  S
Sbjct: 538 FLEDFGQYTLIIRAHPTWFPAGQEEQVAKDLIDMYLATGKV-SVKSFLEATAIMMSCKRS 596

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I++   +   +   LL+E+    N   C HGRP  +   LSD+E++F R
Sbjct: 597 IKANHYLDDKQARALLKELTTCENPFNCPHGRPVLVHFTLSDMERMFKR 645


>gi|197117368|ref|YP_002137795.1| DNA mismatch repair protein [Geobacter bemidjiensis Bem]
 gi|238690886|sp|B5EGD4|MUTL_GEOBB RecName: Full=DNA mismatch repair protein mutL
 gi|197086728|gb|ACH37999.1| DNA mismatch repair protein MutL [Geobacter bemidjiensis Bem]
          Length = 647

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 200/647 (30%), Positives = 330/647 (51%), Gaps = 58/647 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E + N+IAAGE++ERP+   KEL+EN+LDA S  V   I  GG+   +++D G 
Sbjct: 4   KIRILPENLTNKIAAGEVVERPASVAKELVENALDAGSKEVVVEIESGGRRLIKVSDTGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ ++  +A++RH TSKI+  +D  ++ T GFRGEALPS+ +VS LT+ +R   +  G 
Sbjct: 64  GMSRDDALLALERHATSKIATDEDLFSLCTLGFRGEALPSVASVSRLTISTRTSDSVEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G +I  V+   M  GT++ VR+LFF  PARL F+KS + E   + +++ R+AI+ 
Sbjct: 124 EIYAEGGRIKEVKECGMAVGTVISVRNLFFNTPARLKFMKSAETEGGHVGELLTRLAISR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT+         + F++ + +  ER++ ++G    +    ++ +   + + G    
Sbjct: 184 PEVRFTYKNDGK----VVFRALDADLKERVATMLGRSIASFLYPVSYQEGGLKVSGLVAA 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R   +  Y +INGR ++DK +   I  AY   +  GRYPVV + +EI P +VDVNV
Sbjct: 240 PECSRSAGSHLYTYINGRFIKDKVVQHAILQAYRNFLERGRYPVVAVFIEIAPGEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQ------KAINKKGISTSSVLSKKMISSFH------Q 347
           HP K  +RFR    + + I  +++        + +  ++  S  ++K  ++        Q
Sbjct: 300 HPTKHEVRFREQGRVHDAIQNAVESVLKETPWLKRPAVAAVSRPTEKDAAAARAVLEGSQ 359

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
              P T  P+ A +          Q  + S ++   ++      D  P  +        G
Sbjct: 360 APLPVTPQPRPALTSEKPVPAPQAQPQQSSISEARVAEVRELLVDFQPRPQPSLRPQYQG 419

Query: 408 I----------------------------------------ACAQIHQNYIISQTTDGLV 427
                                                       Q + +YI+ Q    LV
Sbjct: 420 SVTSKEALPYAPMAAPVPVREPETAAPEPDPAAAGYFSSLGVIGQFNASYILCQRGTDLV 479

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQHAAHER+ FEK++  F   ++ SQ LL PE ++    E A++ EH  +L RLG + 
Sbjct: 480 LIDQHAAHERVAFEKLKGQFAGREVDSQGLLFPETMEFSFRESAVLREHLAELARLGFEF 539

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E FG N   ++ +P +LS       +RDI++E+   S +    D  E++LA +AC+  +R
Sbjct: 540 EEFGGNTWLLKGVPQVLSATRYVDTIRDILEELGSLSRSRAFSDIQEDLLARIACHSVVR 599

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             R +  +E+  L ++M++   SS C HGRP    L L+++EK+F R
Sbjct: 600 GKRTLSQVEITALFKQMDETDFSSNCPHGRPVMQTLTLAEVEKMFKR 646


>gi|23099087|ref|NP_692553.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831]
 gi|22777315|dbj|BAC13588.1| DNA mismatch repair protein [Oceanobacillus iheyensis HTE831]
          Length = 630

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 187/633 (29%), Positives = 297/633 (46%), Gaps = 44/633 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I ++ + + N+IAAGE++ERP+  +KEL+ENS+DA ++ +   I   G    +ITDNG
Sbjct: 1   MPIIQMPDALANKIAAGEVVERPASVVKELLENSIDAGATWIRVEIKEAGLEEIRITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  +++  A  RH TSKI    D  ++ T GFRGEAL SI +VS L+  +    +  G
Sbjct: 61  AGMEEDDVERAFLRHATSKIKNESDLFHVKTLGFRGEALASIASVSKLSAQT-SQGDQAG 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + + G  +          GT + V +LF+  PARL ++KS   E   I+DV+ RMA+A
Sbjct: 120 TLLQLEGGSVKHRGKSDARQGTDITVSELFYNTPARLKYMKSLHTELGHISDVLNRMALA 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+V            K N    NG+  + ISQV G       + ++ K+ +  + GY  
Sbjct: 180 HPEVRIEALHNDKGLIKTN---GNGDILQVISQVYGMSVAKQMLPVDVKTLDYRVHGYIA 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R + N     INGR +++  +   I   Y   +P+GR P+VVL +E+DP  VDVN
Sbjct: 237 KPEVTRASRNYMSTIINGRFIRNIGLNKAILQGYHTLLPIGRSPIVVLNIEMDPILVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----SSVLSKKMISSFHQDNAPKT 353
           VHPAK  +RF     +   I   I+    +  +            K   SSF  D+  + 
Sbjct: 297 VHPAKLEVRFSKDKELFTSIESMIRDRFREITLIPKVEKQPVQRQKSEQSSFRFDSNNRE 356

Query: 354 HLP-------KYATSLTNTQEKLFLQENR-------------------------LSTNDL 381
             P          + + +  EK  L E R                         +S +  
Sbjct: 357 KQPINSDFSQDSRSIIRDQTEKFDLPETRDKMINREIEQHANLVDNDESEVTEKVSVDMS 416

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
             S +  ++ + +    +      +     Q+   YI++Q  +GL +VDQHAA ER+ +E
Sbjct: 417 TSSFEAAHAPNREEQTNTIDKRVPMMYPIGQLQGTYILAQNENGLFMVDQHAAQERVKYE 476

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
             R         SQ LL P   D  + E   I  H EDL ++G+  E FG     IR  P
Sbjct: 477 FFRNKLGKPMNESQELLIPMTFDFAKQESLFIENHKEDLEQVGLFFEAFGNQTYVIRSHP 536

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
               K    +++R+++D++++ S   +++   E     M+C  SI++   + S EM +LL
Sbjct: 537 TWFPKGFEEEVIREMVDQVMNESKI-SVEGIREEAAILMSCKRSIKANHYLTSDEMYQLL 595

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++    +   C HGRP  +     ++EK+F R
Sbjct: 596 EDLRNTTDPFTCPHGRPIIVHFSTYELEKMFKR 628


>gi|229134576|ref|ZP_04263386.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-ST196]
 gi|228648837|gb|EEL04862.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-ST196]
          Length = 647

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 184/648 (28%), Positives = 303/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            ++I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLSIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPIGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHTKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
                                              Q+  P   L +   S   + + +  
Sbjct: 359 RESSMPNIVLPTGMDEKQEETTTVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSSKPVIE 418

Query: 372 QENR-----LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +  R      S +D    ++           E             Q+H  YI +Q  +GL
Sbjct: 419 ETVREEKEWTSNDDDFELEELEEEVGEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVTQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|193213544|ref|YP_001999497.1| DNA mismatch repair protein MutL [Chlorobaculum parvum NCIB 8327]
 gi|238692607|sp|B3QL59|MUTL_CHLP8 RecName: Full=DNA mismatch repair protein mutL
 gi|193087021|gb|ACF12297.1| DNA mismatch repair protein MutL [Chlorobaculum parvum NCIB 8327]
          Length = 626

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 184/630 (29%), Positives = 309/630 (49%), Gaps = 41/630 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I KL + + N+I+AGE+++RP+  +KEL+ENS+D+ +S +  VI   G+   +I DN
Sbjct: 1   MPSIAKLPDIVANKISAGEVVQRPASVVKELLENSIDSGASAITVVIKEAGRQLVRIIDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM S++  ++V+R  TSKISD  D + + T GFRGEAL SI +VSH  L +R      
Sbjct: 61  GCGMDSDDALLSVERFATSKISDVDDLNALRTLGFRGEALASISSVSHFELKTRRQSEPV 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G Q+  +G +I   +P    PGT + VR+LFF +PAR  FLKS   E   I + ++   +
Sbjct: 121 GIQLISNGGEIEGPQPAQCEPGTSISVRNLFFNVPARRKFLKSNATEFKHIHETVKAFVL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           AYP++ +         +         +  ER+S   GE F  + +E+ E+++ +T+ GY 
Sbjct: 181 AYPEIEWRLINDDHELFYFRTP----DVRERLSHFYGEGFGESLIEVTEENDYMTIGGYL 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P          Y +IN R +Q++ ++  ++ AYAE +   + P  +L L +DP  VDV
Sbjct: 237 GKPGMMVRQKYDQYFYINRRLIQNRMLVQAVQQAYAELLEERQSPFALLFLGLDPSLVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS-------------- 343
           NVHPAK  ++F +   IR+ +   +++A+     S  + ++                   
Sbjct: 297 NVHPAKLEVKFEDEKSIRSMVYPVVKRAVRTADFSPEATVAPSPAPVGSHGIGLPESSSR 356

Query: 344 -------------------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                              ++ Q     +       S+   +            + +  S
Sbjct: 357 KLAYSDFSGKSSTTGDLYRNYRQGAFDLSGASVPPPSIDPVESSFGSGSGEPYPSMVQES 416

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                ++     +E             Q+H  YII Q   GL+I+DQH AHER+++E+  
Sbjct: 417 LLTPSADQPSAADEQNPVAPDKEPKIWQLHNKYIICQIKTGLMIIDQHVAHERVLYERAI 476

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
              N     SQ LL P+ IDL   +  +  E  E+L+RLG     FG  ++ I  +P  +
Sbjct: 477 DVMNEAVPNSQQLLFPQKIDLKPWQYEVYEEISEELYRLGFTIRPFGGLSVMIEGVPPDV 536

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              N   +L+D+I E  ++++   L+ R +N+  + +C  +I +G+K+   +M  L+  +
Sbjct: 537 RDGNEATILQDMIAEYQENASKLKLEKR-DNLAKSYSCRNAIMTGQKLDVEQMRMLIDRL 595

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                   C HGRP  I+L L +++++FGR
Sbjct: 596 FATRMPYVCPHGRPVIIRLSLGELDRMFGR 625


>gi|294500853|ref|YP_003564553.1| DNA mismatch repair protein MutL [Bacillus megaterium QM B1551]
 gi|294350790|gb|ADE71119.1| DNA mismatch repair protein MutL [Bacillus megaterium QM B1551]
          Length = 625

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 173/626 (27%), Positives = 295/626 (47%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS+++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIVQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIELEEAGLSKIRILDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE+   A +RH TSKI    D   I T GFRGEALPSI +VS L L +       G 
Sbjct: 63  GIASEDCLTAFKRHATSKIKTEQDLFRIRTLGFRGEALPSIASVSMLELKTST-GEEAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +I      +   GT + + +LFF  PARL ++K+   E   +TDV+ R+A+++
Sbjct: 122 HLKLRGGEIVHHELTSSRKGTELVIENLFFNTPARLKYMKTVNTELGNVTDVVNRLAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS           ++ + + +G+  + ++ + G       + +N +S +  + GY  +
Sbjct: 182 PEVSIRLMHQGR---QLLYTNGSGDVRQVLAAIYGMAVARKMIPINVQSLDYEVSGYVAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR V++  +L  ++  Y   +P+GR+P+V L + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSTIINGRFVKNYGLLKAVQQGYHTLLPIGRFPIVFLTITMDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R      +   I Q ++ A  K+ +   +V+  K  S+              +
Sbjct: 299 HPAKLEVRLSKEAELFELIEQGVKAAFKKQQLIPDAVVPTKSKSAVQPTEQQTFTFDHRS 358

Query: 360 TSLTNTQEKLFLQEN-------------------------------RLSTNDLLPSDDPT 388
                    +  + +                                +   +    ++  
Sbjct: 359 KPSGYQPSDMVREPSLKEAPARVDEIMPPVKKEVIRQDEELEPTFREIEHYEESVEENAP 418

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
             E +   +E             Q+H  YI++Q   GL I+DQHAA ER+ +E  ++   
Sbjct: 419 IPEPSHSAKERPEPRVPAMYPIGQMHGTYILAQNEKGLFIIDQHAAQERIKYEYFKRKLG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
                 Q LL P  ++    E  ++ E+ + L  +G+  E FG N+  +R  P    K  
Sbjct: 479 EVDSEVQELLMPLTLEFSGNEALILEEYKDMLAEVGVFLEPFGQNSYIVRSHPQWFPKGE 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             + + ++I +I        ++   E     M+C GSI++   +++ E+  LL  + K  
Sbjct: 539 EQETIEEMIQQIFTMKRV-NIEKLREEAAIMMSCKGSIKANHHLRNDEIFALLETLRKTT 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   C HGRP  I     ++EK+F R
Sbjct: 598 DPFTCPHGRPIIIHHSTYEMEKMFKR 623


>gi|229086317|ref|ZP_04218495.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-44]
 gi|228697012|gb|EEL49819.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-44]
          Length = 645

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 185/647 (28%), Positives = 304/647 (46%), Gaps = 60/647 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLVIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLAAIYSIQVAKKLIPIEAESLDFTIRGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNYVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM-------ISSFHQDNAPK 352
           HPAK  +RF     +   I +++Q A  K  +   + ++ K           FH ++   
Sbjct: 299 HPAKLEVRFSKEQELLQLIEKTLQDAFKKIQLIPDAGVTTKKKEKDESVQEQFHFEHTKP 358

Query: 353 THLPKY----ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY---- 404
              P       T +   QE++ +++ +     L       +      V E E+       
Sbjct: 359 KESPMPNIVLPTGMDEKQEEVSIRK-QTPAPQLWQQPKQEWQPPQSLVREEESWQPSSKP 417

Query: 405 -------------------------------------QLGIACAQIHQNYIISQTTDGLV 427
                                                       Q+H  YI +Q   GL 
Sbjct: 418 IIEKSVQEAKEWDSSDEDFELEEIEEIQEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGLY 477

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+  
Sbjct: 478 MIDQHAAQERINYEYFRDKVGQVTQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLFL 537

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E+FG  +  +R  P    K    +++ +++ +++       ++   E     M+C  SI+
Sbjct: 538 EQFGHQSFIVRSHPTWFPKGKETEIIDEMMQQVVKLKKVD-IKKLREEAAIMMSCKASIK 596

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + + + + ++  LL ++    N   C HGRP  +     ++EK+F R
Sbjct: 597 ANQYLTNDQIFALLEKLRTTTNPYTCPHGRPILVHHSTYELEKMFKR 643


>gi|218904896|ref|YP_002452730.1| DNA mismatch repair protein MutL [Bacillus cereus AH820]
 gi|226723026|sp|B7JJ46|MUTL_BACC0 RecName: Full=DNA mismatch repair protein mutL
 gi|218536438|gb|ACK88836.1| DNA mismatch repair protein MutL [Bacillus cereus AH820]
          Length = 647

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 188/648 (29%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T+QGY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIQGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPTQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229098237|ref|ZP_04229184.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-29]
 gi|229117254|ref|ZP_04246632.1| DNA mismatch repair protein mutL [Bacillus cereus Rock1-3]
 gi|228666154|gb|EEL21618.1| DNA mismatch repair protein mutL [Bacillus cereus Rock1-3]
 gi|228685135|gb|EEL39066.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-29]
          Length = 647

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 183/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  ++  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAVQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------------------- 333
           HPAK  +RF     +   I +++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHTKP 358

Query: 334 --------------------------SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
                                      + L +     +    +       +  S     E
Sbjct: 359 KEPQMPNIVLPTDMDEKQEERTTVKQPAQLWQPAKREWQPPQSLVREEQSWQPSSKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E   ++ND     +    E  +  E E             Q+H  YI +Q  +GL
Sbjct: 419 EPIREEKSWNSNDDDFELEELEEEVGEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|332982486|ref|YP_004463927.1| DNA mismatch repair protein MutL [Mahella australiensis 50-1 BON]
 gi|332700164|gb|AEE97105.1| DNA mismatch repair protein MutL [Mahella australiensis 50-1 BON]
          Length = 579

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 171/591 (28%), Positives = 294/591 (49%), Gaps = 17/591 (2%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L +   ++IAAGE++ERP+  +KEL+ENS+DA ++ +   I  GG +  ++TDNG GM  
Sbjct: 2   LDQDTRSKIAAGEVVERPASVVKELVENSIDAAATAITVEIENGGMTLIRVTDNGEGMER 61

Query: 66  EEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           E+  +A +RH TSKI  +DD   I T GFRGEAL SI AVS + + +    ++ G  + I
Sbjct: 62  EDAVLAFERHATSKIARADDLEAIFTLGFRGEALASIAAVSKVRMETVRQGSSEGTFVEI 121

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            G K+ S   +    GT V V DLF+  PARL ++KS + E + I D+I R  + YP +S
Sbjct: 122 EGGKLISQGVIGRPGGTSVTVSDLFYNTPARLKYVKSPKTEASRIKDIIDRFVLGYPHLS 181

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
           F + ++     ++ +    G+  E I+ V G +     + +  +   I + GY G P   
Sbjct: 182 FRYLSVGK---QVLYSPGTGHLDEAIAAVYGHETAKKMISVQYEWEGIEINGYIGSPDTA 238

Query: 244 RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAK 303
           R N      F+NGR ++   +   +  A++  I + R+P+ V+ + +DP  VDVNVHPAK
Sbjct: 239 RANRAFQTFFVNGRYIRSPLLSRALEEAFSTLIMVNRFPMCVINITLDPHDVDVNVHPAK 298

Query: 304 SYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
           + +RF +   +      +I++A++  G+S+       +I    +D               
Sbjct: 299 TEVRFTDDRRVAAVFFHAIKRALSGDGMSSEQDQDNGIIEPVREDGQQ-----------A 347

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTT 423
            T+  L  Q      ++        ++  +   ++  A           +   Y++ + T
Sbjct: 348 QTERNLDRQPVLPWVDNGRSYHQQNFASIDKVNDDRGAYEAPSMRVIGVLFSTYLLIEKT 407

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHAAHER+++E+         +  Q L++P ++D+   E  L+ ++ E L  +
Sbjct: 408 DQLYIIDQHAAHERILYEQYMSMLQKQHLELQYLVSPLVLDITPQERQLLEDNMELLRSM 467

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + E F  +   +R +P +  +     LL+DIID +           R E ++  MAC 
Sbjct: 468 GFEIEEFDSDTYVLRAVPVLFGRPRAEGLLKDIIDGMRLFDAHSPYDYRREEVM-MMACR 526

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++++   +   ++ RL  E+        C HGRP    +   ++EK+F R
Sbjct: 527 SAVKAHDHLDQSQIIRLAGEILSGNVPPTCPHGRPIVRSISKYELEKMFKR 577


>gi|228992456|ref|ZP_04152384.1| DNA mismatch repair protein mutL [Bacillus pseudomycoides DSM
           12442]
 gi|228767277|gb|EEM15912.1| DNA mismatch repair protein mutL [Bacillus pseudomycoides DSM
           12442]
          Length = 643

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 183/644 (28%), Positives = 293/644 (45%), Gaps = 56/644 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELVTSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIMQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLAAIYSIQVAKKLIPIEVESLDFTIRGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  + +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYISTIVNGRYVRNYVLMKAIQQGYHTLLPVGRYPIGFVSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HPAK  +RF     +   I +++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLQLIEKTLQDAFKKIQLIPDAGVTSKKKEKDESVQEQFHFEHTKP 358

Query: 335 ----------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                          +           K  L +         E L  +EN    +  +  
Sbjct: 359 KEVPLPNIVLPTGMDEKQEEIQAKPQNKNLLWQPPKQEWQPPESLVKEENGWQLSKSMIG 418

Query: 385 DDPTYSEDNDPVEES--------------EATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
                    D  EE                           Q+H  YI +Q   GL ++D
Sbjct: 419 KSVQDGNGWDNSEEDFELEEVAEIQEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGLYMID 478

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+  E+F
Sbjct: 479 QHAAQERINYEYFRDKVGQVTKEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLFLEQF 538

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G  +  +R  P    K    +++ +++ +++       ++   E     M+C  SI++ +
Sbjct: 539 GHQSFIVRSHPTWFPKGQEIEIIDEMMQQVVKLKKVD-IKKLREEAAIMMSCKASIKANQ 597

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 YLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 641


>gi|323705359|ref|ZP_08116934.1| DNA mismatch repair protein MutL [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535261|gb|EGB25037.1| DNA mismatch repair protein MutL [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 609

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 189/611 (30%), Positives = 315/611 (51%), Gaps = 24/611 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +++IN+I+AGE++ERP   +KEL+ENS+DA+S  +   I  GG  + ++ D+G 
Sbjct: 3   KINLLDDELINKISAGEVVERPMSIVKELVENSIDADSKNITIEIIDGGIPYIKVLDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A  RH TSKI  +DD  NI T GFRGEAL SI A+S + L ++   +  G 
Sbjct: 63  GMNEIDAVLAFGRHATSKIKSTDDLFNIGTLGFRGEALASIAAISKVLLKTKEENSLYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G KI          G  VEV+D+F+  PAR  FLK    E   ITD++ ++A++ 
Sbjct: 123 LINVEGGKILKKVKCGCEKGCSVEVKDVFYNTPARRKFLKRPSTEAMYITDMVAKIALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF +   K   +     S N +  E I ++ G++  +N +E       + ++ +   
Sbjct: 183 PDISFRYIKDKRMEFM---TSGNNSVNEVILRLYGDELYSNLIETEYNDEYMNIKIFLCK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P++ RGN N   +F+NGR V++K   + +  AY   IP+ RYPVV+  L IDP+ +DVNV
Sbjct: 240 PSYTRGNRNMQILFVNGRFVKNKIYTTAVEEAYKTLIPVNRYPVVITYLNIDPKNIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  ++F +   I + I +SI+ A+N+  +  +        +   ++   +   PK  
Sbjct: 300 HPTKLEVKFSDEKEIFDSIYKSIKNALNRSNLIPTIRHDMFTYADITENKVEEKSNPKQL 359

Query: 360 TSLTNTQEKLFLQ---------ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--- 407
             +        L+          N   +++    D    +  N  +E +   ++      
Sbjct: 360 NMIEEESTNKILEVYPNNKSFVSNVKESSEKAYFDYNDVNAFNKEIENTHIENFNTLPDE 419

Query: 408 ----IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                    I   YII +  D + +VDQHAAHER+++EK    +N+  +  +    P +I
Sbjct: 420 RDDYKIVGVIFSTYIIVEKDDVIYLVDQHAAHERILYEKFMNMYNN--VQGKQTTIPILI 477

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           ++  G+  +I E+ E  ++LG K E FG N+I +RE+P +L +    QL  DIID++   
Sbjct: 478 NIEPGDDVIINENIELFNKLGYKFESFGNNSIVLREVPVVLGQPESRQLFIDIIDKLKRD 537

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                +  + E  +  MAC  ++++   +   E+N L  +++   N   C HGRP  + +
Sbjct: 538 DFNKDINLK-EETIIMMACKKAVKAMDSLSKEEINSLFNDLKVTENPYTCPHGRPVIVSI 596

Query: 584 KLSDIEKLFGR 594
           K  ++EK+F R
Sbjct: 597 KKYELEKMFKR 607


>gi|188583966|ref|YP_001927411.1| DNA mismatch repair protein MutL [Methylobacterium populi BJ001]
 gi|179347464|gb|ACB82876.1| DNA mismatch repair protein MutL [Methylobacterium populi BJ001]
          Length = 671

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 233/656 (35%), Positives = 363/656 (55%), Gaps = 66/656 (10%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  +E  I GGG+   ++ D+G GM
Sbjct: 16  RRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARSIEVAIEGGGRRLIRVIDDGIGM 75

Query: 64  TSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            +E++ +AV+RH TSK+ D D + I + GFRGEALPSIGAVS LT+ SR      G  + 
Sbjct: 76  GAEDLALAVERHATSKLPDGDLTRIGSLGFRGEALPSIGAVSRLTITSRTADGE-GLSLT 134

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           I       VRP     GT +EV +LF   PARL FLKS++ ET  +++++RR+A+A P++
Sbjct: 135 IDSGAKGPVRPAPATRGTRIEVTELFAATPARLKFLKSDRAETAAVSEILRRLAVAQPQI 194

Query: 183 SFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            FT  T   +        +        R+  V+G DF  NAV ++       L G+ G+P
Sbjct: 195 RFTLRTESGSPTVFPAESEPGPAALLRRLGAVLGPDFPGNAVPVDMAREGFALAGHVGLP 254

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+RG AN  +  +NGR V+D+ +L  +R AYA+T+   R+PV+ L L  DP  VDVNVH
Sbjct: 255 TFHRGAANHIHFVVNGRPVRDRLLLGAVRGAYADTMSSDRHPVLALHLTCDPALVDVNVH 314

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD------------ 348
           PAK+ +RFR P ++R  I+ +I +A+ + G  +SS  ++  + +                
Sbjct: 315 PAKTELRFREPGLVRALIVSAIHEALRRAGARSSSTGTQAALDALRAGGSLASGSLGGGG 374

Query: 349 ------------NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-- 394
                        A  T     +     +  +LF   +  +         P ++ +    
Sbjct: 375 LGGVPAMRSGGGFAVHTGASAASPLTPRSAARLFSGPSVAAPAGYRAPQHPAFATERPGF 434

Query: 395 --------------------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                                        E+    + LG A AQIH+ YI++QT DG+V+
Sbjct: 435 AETPQALFAADLAPPGADLRPEPEAVFEAETPPDSHPLGAARAQIHETYILAQTRDGIVL 494

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           VDQHAAHERL++E+++++     +  Q LL P+++++   E   ++E   +L RLG+  E
Sbjct: 495 VDQHAAHERLVYERLKRERAGGGVARQGLLIPDVVEMAPEEADRLVEAAPELERLGLSLE 554

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS----------STTYTLQDRIENILA 538
            FGP A+ +R +PA L+  ++  L+ D++D +  S               +  R++ +L+
Sbjct: 555 AFGPGAVLVRAVPAALAGGSVRNLVLDVLDALQASGVEEGGPAGEGDPDPVSRRLDALLS 614

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            M+C+GSIR+GR+++  EMN LLREME  P S  CNHGRPTF+ L L+DIE+LFGR
Sbjct: 615 RMSCHGSIRAGRRLKPEEMNALLREMEATPLSGSCNHGRPTFVTLGLADIERLFGR 670


>gi|269925916|ref|YP_003322539.1| DNA mismatch repair protein MutL [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789576|gb|ACZ41717.1| DNA mismatch repair protein MutL [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 586

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 189/595 (31%), Positives = 331/595 (55%), Gaps = 18/595 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L ++ I Q+AAGE++ERP+  +KELI+NS+DA +++++  +  GG    ++ DNG G
Sbjct: 5   IKPLDQETIRQLAAGEVVERPASVVKELIDNSIDASATKIQIYVENGGLDLIRVVDNGTG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ + VQ+H TSKIS  +D   I+T GFRGEAL +I +VS L + S+   +  GA+
Sbjct: 65  IPRKDLELCVQKHATSKISSPEDLYKINTLGFRGEALYAIASVSRLRIRSKHGDSP-GAE 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +       + +R V M  GT VEVR+LF+ +PARL F+     E + IT  +++ A+ +P
Sbjct: 124 LECLSPGNTRIRTVGMPQGTQVEVRNLFYNVPARLKFIGGPTSEASRITSTVKQYALGHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F        + +       GN  + I  V G    ++ + +  + +EI ++GY  +P
Sbjct: 184 NIAFELQIDGKKQLETF---GKGNILDCIGSVFGLQIRDHMIPVAYEEDEIEIKGYVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + NR N +  +VF+NGR V  K ++  I+ +Y+  + +GR+P+V++ L I P  VDVNVH
Sbjct: 241 SINRSNRSDIHVFVNGRPVSAKQLMFAIQESYSSLLMVGRFPIVIINLLIPPEFVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ +RF +   + + + ++I+ A+ +   S  + L         QD+ P+  L   A 
Sbjct: 301 PTKAEVRFADDRRVASVVGRTIRTALQEAFSSRDAEL--------PQDDQPQGKLRPLAF 352

Query: 361 SLTNTQ-EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           S  +    +        ST      +  +    +   EE             QI   YII
Sbjct: 353 SFNSASISEKHAWHVTTSTQTHQHIESTSTEATSSLEEERTLPKLPPLRVLGQIALTYII 412

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  +G+ ++DQHAAHER++ E+++++  + K+ SQ LL P II L + +   +    ++
Sbjct: 413 AEGPNGMYLIDQHAAHERILLERIQKELETDKVASQMLLDPLIITLGDHQATFMKNLVDE 472

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L+RLG +AE FG   I +R IPAIL K+ +   + D+  +I + S    ++ R   +  +
Sbjct: 473 LNRLGFEAESFGVKEIIVRSIPAILPKEEVMAFIEDLCQDINNFSN---VELRRNAVAVS 529

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  +I++G+++   EM  L+ ++E+    + C HGRPT ++L  S +E+ FGR
Sbjct: 530 LACRSAIKAGQQLSMQEMRSLIEQLEQTNFPTACAHGRPTILELTKSQLEREFGR 584


>gi|148658624|ref|YP_001278829.1| DNA mismatch repair protein MutL [Roseiflexus sp. RS-1]
 gi|148570734|gb|ABQ92879.1| DNA mismatch repair protein MutL [Roseiflexus sp. RS-1]
          Length = 605

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 182/608 (29%), Positives = 311/608 (51%), Gaps = 19/608 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   +  QIAAGE+IERP+  ++EL+EN+LDA + R+     GGG    ++ D+G
Sbjct: 1   MPIRVLDATVAAQIAAGEVIERPASVVRELVENALDAGARRIAVEARGGGLREIRVQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++E+ +A  RH TSK+S  DD  +I T GFRGEALPSI AV+ +  ++R    + G
Sbjct: 61  CGIPADEVELAFARHATSKLSTADDLWSISTLGFRGEALPSIAAVAQVICITRAAGADVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G ++ ++ P   +PGT + VR+LF+  P R  FL+S+  E+  IT V+ + A+A
Sbjct: 121 VELRIAGGEVQAIMPRGCSPGTTISVRNLFYNTPVRREFLRSDATESAAITAVVTQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS----NEITLQ 234
           YP+V F+ +            S NG+      +V G D     + +   +      + + 
Sbjct: 181 YPEVRFSLAIDGRATLH---TSGNGDLRAAAIEVYGLDVARQLLPVEASTGEGVEYVQVS 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI-RTAYAETIPLGRYPVVVLLLEIDPR 293
           G    P   R +    ++F+N R +Q +  ++ +   AY   +  GR+PV +L + + P 
Sbjct: 238 GLVSPPGLTRSSRAAIHLFVNRRAIQPRGQIAMVLEEAYHTLLMKGRHPVAILNISVHPA 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-------SSFH 346
            VDVNVHP KS ++FR+ T + + + ++++ A+ + G+                      
Sbjct: 298 AVDVNVHPTKSEVKFRDTTRVMSTLGRAVRSALLESGVRPWDDPGVPATLETAQRRFELR 357

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           +         +    +T         +    T+D   +         DP+  + A+    
Sbjct: 358 RLGTSHESGWEAFPHMTAGDSPAAPTQVNAWTDDGHSAWQREPVTSPDPLPPTRASRLPP 417

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                QI Q+YI++++ DG+ ++DQHAAHER+ +E++     +  + SQ LL P+++DL 
Sbjct: 418 LRIIGQIAQSYIVAESADGMYLIDQHAAHERITYERLMAQRGAGAVESQELLMPQVVDLP 477

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
                L++     L   G   E FG  ++ +R IPA+L   ++   L +I D +      
Sbjct: 478 PTAHDLLLAAANRLAEWGFVVEPFG-RSLRVRAIPAVLYPGDLTTALLEIADHLSGRGGA 536

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
               D  E +L T++C+ S+R+G+ +   EM  L+ ++E+  +   C HGRPT I L  +
Sbjct: 537 TP-HDWREAMLITLSCHTSVRAGQTLSFDEMRGLVMQLEQCESPRTCPHGRPTMILLTTT 595

Query: 587 DIEKLFGR 594
            IE+ FGR
Sbjct: 596 QIERQFGR 603


>gi|228954045|ref|ZP_04116074.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229071265|ref|ZP_04204489.1| DNA mismatch repair protein mutL [Bacillus cereus F65185]
 gi|229081020|ref|ZP_04213533.1| DNA mismatch repair protein mutL [Bacillus cereus Rock4-2]
 gi|228702334|gb|EEL54807.1| DNA mismatch repair protein mutL [Bacillus cereus Rock4-2]
 gi|228711886|gb|EEL63837.1| DNA mismatch repair protein mutL [Bacillus cereus F65185]
 gi|228805611|gb|EEM52201.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 647

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIVLPTGMDAKQEEPQAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229174433|ref|ZP_04301965.1| DNA mismatch repair protein mutL [Bacillus cereus MM3]
 gi|228608993|gb|EEK66283.1| DNA mismatch repair protein mutL [Bacillus cereus MM3]
          Length = 647

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 185/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLMIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQSAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPDIVLPTGMDEKREEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+++ ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIQKEKSWNSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|167041133|gb|ABZ05893.1| putative DNA mismatch repair protein, C-terminal domain protein
           [uncultured marine microorganism HF4000_001A02]
          Length = 585

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 174/594 (29%), Positives = 310/594 (52%), Gaps = 13/594 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++LSE + N+I+AGE++ERP+  +KEL+EN +DA ++ +  V+  GG+   Q+TDNG G
Sbjct: 2   IKQLSEDLRNKISAGEVVERPASVVKELVENGIDAGATEITVVVEKGGQQLIQVTDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++++E+P+A + + TSKI   DD  NI T GFRGEAL SI +VS + ++S   ++  G++
Sbjct: 62  ISAKELPIAFESYSTSKIGSVDDLFNIDTLGFRGEALASIASVSEVNVLS-ANESGDGSE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I    + +V+P     GT + +R+LF+  PAR  FLKS ++E   + +++RR A++YP
Sbjct: 121 MSILNGHLGAVQPAPAVQGTSITIRNLFYNTPARKKFLKSPRMEFRKVVEMVRRFALSYP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
             +F   +   +   +           RI  V+   + +  + ++    + T+ GY G  
Sbjct: 181 DRNFKLISDNRDILNLQS----EKLESRIVHVMDPAYRDQLLPVDFTKGDYTISGYLGNL 236

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + Y+F+N R +Q++ + S +  AY   I  G YP   L + +   +VDVNVH
Sbjct: 237 NLIRTRPGEQYIFLNERFIQNRLMNSGVYQAYKSIINRGEYPFFALNISVPHDEVDVNVH 296

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ +RF++   I + +  +I++A++    +            F  D    T       
Sbjct: 297 PMKTEVRFKDEWRIYHVLKSAIEEALSPILHTIPDFEK----PGFSSDFEFPTTFTPKEG 352

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                QE L L       N     D                T         Q+H  YI+S
Sbjct: 353 QANPDQEGLHLTHGDTGNNFQPALDRAKSYASQLATRPEPDTGRVDLEKIWQVHSKYIVS 412

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             T GLVI+DQH AHER+++E++   F++  + +QTLL PE+++    E + +++    L
Sbjct: 413 PITSGLVIIDQHVAHERILYEEVMAAFDANPMAAQTLLFPEVMEFSPDEFSTLLDVLPYL 472

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
            ++G + + FG N + I  IP+ ++  N   ++R+++D  +D+   +      E + A+ 
Sbjct: 473 EKMGFRMKEFGKNTVMIEAIPSEMAWGNEKTIIREMLDNYLDTQKKHA--SFQEALAASF 530

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AC  ++++G  +   EM  L+  +    +   C HGRP  I+L + ++++ F R
Sbjct: 531 ACKAAVKAGDVLNGEEMRELVNRLFGTKHPYYCPHGRPIIIQLSMDELDRRFER 584


>gi|42782852|ref|NP_980099.1| DNA mismatch repair protein [Bacillus cereus ATCC 10987]
 gi|81830999|sp|Q732V8|MUTL_BACC1 RecName: Full=DNA mismatch repair protein mutL
 gi|42738779|gb|AAS42707.1| DNA mismatch repair protein MutL [Bacillus cereus ATCC 10987]
          Length = 647

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 188/648 (29%), Positives = 303/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S  +  E
Sbjct: 359 KEPSMPEIILPTGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKSIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +ND     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNDEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229180045|ref|ZP_04307389.1| DNA mismatch repair protein mutL [Bacillus cereus 172560W]
 gi|228603254|gb|EEK60731.1| DNA mismatch repair protein mutL [Bacillus cereus 172560W]
          Length = 647

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIVLPTGMDAKQEEPRAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229186007|ref|ZP_04313177.1| DNA mismatch repair protein mutL [Bacillus cereus BGSC 6E1]
 gi|228597426|gb|EEK55076.1| DNA mismatch repair protein mutL [Bacillus cereus BGSC 6E1]
          Length = 647

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPLAVKQPTQLWQPPKQEWQPPQSLVREEKSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|118478989|ref|YP_896140.1| DNA mismatch repair protein [Bacillus thuringiensis str. Al Hakam]
 gi|166231104|sp|A0RHE0|MUTL_BACAH RecName: Full=DNA mismatch repair protein mutL
 gi|118418214|gb|ABK86633.1| DNA mismatch repair protein MutL [Bacillus thuringiensis str. Al
           Hakam]
          Length = 647

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPLAVKQPTQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|167037587|ref|YP_001665165.1| DNA mismatch repair protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116002|ref|YP_004186161.1| DNA mismatch repair protein MutL [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|238687658|sp|B0K9L6|MUTL_THEP3 RecName: Full=DNA mismatch repair protein mutL
 gi|166856421|gb|ABY94829.1| DNA mismatch repair protein MutL [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929093|gb|ADV79778.1| DNA mismatch repair protein MutL [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 614

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 195/616 (31%), Positives = 322/616 (52%), Gaps = 29/616 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L EK IN+I+AGE++ERP+  +KELIENS+DA S  +   I  GG  + +++D+G 
Sbjct: 3   KIHLLDEKTINKISAGEVVERPASIVKELIENSIDAGSKNITVEILEGGIPYIKVSDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI    D  +I T GFRGEAL SI AVSH+TL ++      G 
Sbjct: 63  GMNEIDAILAFERHATSKIKSDNDLYSIGTLGFRGEALASIAAVSHVTLQTKEEGALFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K+          G  +EVRD+FF  PAR  FLK    E+  ITDV+ ++ +++
Sbjct: 123 KVVVEGGKVVEKTTCGCAKGCSIEVRDVFFNTPARRKFLKRPSTESMYITDVVTKLCLSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF +   +  ++     S NGN  + I ++ G +  ++ +  + +S ++ L+   G 
Sbjct: 183 PEVSFKYVKDRKLQF---ITSGNGNIEDVILRLFGNEVYSSLMSASFESEDLKLKILAGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            + N  N N  + ++NGR V++K + + +  A+   IP+ RYP V L +EIDPRQ+DVN+
Sbjct: 240 NSLNYSNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAP 351
           HP+K  I+F +   I   + ++I+ +++K  +     + +K           S  Q    
Sbjct: 300 HPSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISAEQTKLY 359

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG---- 407
            T   K         +  F  +N    +++L  +    S DN      E  H +      
Sbjct: 360 FTSSDKEVEKEKKKFDNEFKGKNVFLKDNVLKENSKNSSLDNHLAVYEEYEHEKEEINKN 419

Query: 408 ---------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                         +   YII +  D   I+DQHAAHER+++EK    +   KI ++ + 
Sbjct: 420 DLAKKISDIRIVGTLFSTYIIVEKEDVFYIIDQHAAHERILYEKFTSQYE--KIQTRQVT 477

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P +++L   +  L+ +  E L++LG   E FG N+I +RE+P IL +    QL  DI++
Sbjct: 478 FPIVVELQPRDLELVHQEKELLNKLGYVFEEFGNNSIILREVPVILGQPEARQLFIDIVE 537

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++ D      +  + ENI+  MAC  ++++   +   E+N+L  +++   N   C HGRP
Sbjct: 538 KLKDKELVNKISLKEENII-MMACKAAVKAMDNLSEKEINKLFDDLKITENPYTCPHGRP 596

Query: 579 TFIKLKLSDIEKLFGR 594
             I +  + +EK+F R
Sbjct: 597 VIIAITKTQLEKMFKR 612


>gi|229151969|ref|ZP_04280165.1| DNA mismatch repair protein mutL [Bacillus cereus m1550]
 gi|228631524|gb|EEK88157.1| DNA mismatch repair protein mutL [Bacillus cereus m1550]
          Length = 647

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSIPDIVLPTGMDAKQEEPQAVKQPPQLWQPPKQEWQPPQSLIREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|269837642|ref|YP_003319870.1| DNA mismatch repair protein MutL [Sphaerobacter thermophilus DSM
           20745]
 gi|269786905|gb|ACZ39048.1| DNA mismatch repair protein MutL [Sphaerobacter thermophilus DSM
           20745]
          Length = 585

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 189/604 (31%), Positives = 310/604 (51%), Gaps = 30/604 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L E  I +IAAGE+IERP+  +KEL+EN+LDA +  V   I  GG+   +++D+G
Sbjct: 1   MPIRLLDEDTIGKIAAGEVIERPASVVKELVENALDAGARSVRVEIRAGGRELIRVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ +EE+P+A+QRH TSK++  DD + + ++GFRGEAL SI AV+ L ++SRPP +   
Sbjct: 61  HGIPAEELPLAIQRHATSKVTRFDDLARLTSYGFRGEALASIAAVAELRIVSRPPDSPHA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A +     ++     V   PGT V VRDLF  +PAR  FL+ +  E   +  V++  A+A
Sbjct: 121 ASLVSRNGRVEPPTTVPAAPGTTVTVRDLFAHVPARRAFLRQDHTEAAYVQRVVQACALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--------ELNEKSNE 230
            P+V F   +       +     +G+    I  V G D     V        E + +   
Sbjct: 181 APEVRFELVSDGR---TVLATDGSGDLGNTIVGVFGPDIAAEMVPIVPPADDEHDPERPA 237

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           +T+ GY G+PT  RGN     + +N R ++ + +   +  AY   I +GR+PV VL + +
Sbjct: 238 VTVSGYVGLPTLTRGNRQHIILLVNRRWIESRSLTFALEQAYHSLIMVGRFPVAVLHITV 297

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
            P ++DVNVHP K  +RF +  ++   I ++++  + +   +              Q   
Sbjct: 298 APERLDVNVHPTKREVRFSDERLVFAAIQRAVRGTLTQHTPA--------------QTIP 343

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
             T  P  A ++            R +             E    V     +   +    
Sbjct: 344 SFTTTPLSAPTVQRRLALSHPDRFRPTPPPPPEDTPGDDQEAGMTVVPDPGSAVPVLRVL 403

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+   YII++  DG+ ++DQHAAHER++FE++ Q F   K   QTLL P +I+L   + 
Sbjct: 404 GQVGATYIIAEGPDGMYLIDQHAAHERVLFEQLWQQFERAKPDIQTLLEPLVIELSPVQL 463

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
                  E++ ++G   E FG +A+A+R +PAI ++++   +L  I+DE+       TL 
Sbjct: 464 ETAERCREEMAQIGFHIEPFGGSAVAVRAVPAIAARRDPRAVLLGILDEMAAGGRGTTL- 522

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
             +E++  + AC+ +IR+G+ +   EM  L+ ++E+      C HGRPT + L   ++E+
Sbjct: 523 --LESLTISTACHSAIRAGQTLSLPEMRELIAQLERCTAPRACGHGRPTMLHLSQEELER 580

Query: 591 LFGR 594
            F R
Sbjct: 581 QFER 584


>gi|229191893|ref|ZP_04318863.1| DNA mismatch repair protein mutL [Bacillus cereus ATCC 10876]
 gi|228591444|gb|EEK49293.1| DNA mismatch repair protein mutL [Bacillus cereus ATCC 10876]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIILPTGMDAKQEEPQTVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|228966711|ref|ZP_04127755.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792810|gb|EEM40368.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 184/648 (28%), Positives = 298/648 (45%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T+ GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTITGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HPAK  +RF     +   I +++Q A  K  +   +                        
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKDKDESVQEQFQFEHAKP 358

Query: 336 --VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                  ++     D   +  LP    +      K   Q  +    +       T     
Sbjct: 359 KEPSMPDIVLPTGMDEKQEEPLPVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTRPIME 418

Query: 394 DPVEESEATHYQ---------------------------LGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|30021860|ref|NP_833491.1| DNA mismatch repair protein [Bacillus cereus ATCC 14579]
 gi|218231496|ref|YP_002368571.1| DNA mismatch repair protein [Bacillus cereus B4264]
 gi|228959975|ref|ZP_04121640.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047451|ref|ZP_04193043.1| DNA mismatch repair protein mutL [Bacillus cereus AH676]
 gi|229111241|ref|ZP_04240795.1| DNA mismatch repair protein mutL [Bacillus cereus Rock1-15]
 gi|229129045|ref|ZP_04258018.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-Cer4]
 gi|229146340|ref|ZP_04274711.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-ST24]
 gi|296504267|ref|YP_003665967.1| DNA mismatch repair protein [Bacillus thuringiensis BMB171]
 gi|81837324|sp|Q81A26|MUTL_BACCR RecName: Full=DNA mismatch repair protein mutL
 gi|226723028|sp|B7HDP3|MUTL_BACC4 RecName: Full=DNA mismatch repair protein mutL
 gi|29897416|gb|AAP10692.1| DNA mismatch repair protein mutL [Bacillus cereus ATCC 14579]
 gi|218159453|gb|ACK59445.1| DNA mismatch repair protein MutL [Bacillus cereus B4264]
 gi|228636973|gb|EEK93432.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-ST24]
 gi|228654282|gb|EEL10147.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-Cer4]
 gi|228672235|gb|EEL27525.1| DNA mismatch repair protein mutL [Bacillus cereus Rock1-15]
 gi|228723895|gb|EEL75248.1| DNA mismatch repair protein mutL [Bacillus cereus AH676]
 gi|228799718|gb|EEM46670.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296325319|gb|ADH08247.1| DNA mismatch repair protein [Bacillus thuringiensis BMB171]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIVLPTGMDAKQEEPQAVKQPPQLWQPPKQEWQPPQSLIREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229123282|ref|ZP_04252486.1| DNA mismatch repair protein mutL [Bacillus cereus 95/8201]
 gi|228660058|gb|EEL15694.1| DNA mismatch repair protein mutL [Bacillus cereus 95/8201]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPTQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEESFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|196034149|ref|ZP_03101559.1| DNA mismatch repair protein MutL [Bacillus cereus W]
 gi|228916406|ref|ZP_04079973.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228947489|ref|ZP_04109779.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195993223|gb|EDX57181.1| DNA mismatch repair protein MutL [Bacillus cereus W]
 gi|228812009|gb|EEM58340.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228843209|gb|EEM88290.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPTQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|196044440|ref|ZP_03111675.1| DNA mismatch repair protein MutL [Bacillus cereus 03BB108]
 gi|225865749|ref|YP_002751127.1| DNA mismatch repair protein MutL [Bacillus cereus 03BB102]
 gi|254766158|sp|C1ENZ2|MUTL_BACC3 RecName: Full=DNA mismatch repair protein mutL
 gi|196024475|gb|EDX63147.1| DNA mismatch repair protein MutL [Bacillus cereus 03BB108]
 gi|225787379|gb|ACO27596.1| DNA mismatch repair protein MutL [Bacillus cereus 03BB102]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 394 DPVEESEATHYQ---------------------------LGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|228935065|ref|ZP_04097895.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824635|gb|EEM70437.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|152976134|ref|YP_001375651.1| DNA mismatch repair protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189030390|sp|A7GR98|MUTL_BACCN RecName: Full=DNA mismatch repair protein mutL
 gi|152024886|gb|ABS22656.1| DNA mismatch repair protein MutL [Bacillus cytotoxicus NVH 391-98]
          Length = 649

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 188/650 (28%), Positives = 306/650 (47%), Gaps = 62/650 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL E++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDEQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELVTSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G +I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGEIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS           K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNTK---KLLHTSGNGDVRQVLAAIYSIQVAKKLIPIEAESLDFTIRGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNYVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HPAK  +RF     +  FI Q++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLQFIEQTLQDAFKKVQLIPDAGVTTKKKTKDESVQEQFHFEHTKP 358

Query: 335 -------------------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
                                      ++ ++     Q+  P   L +   S  +T + L
Sbjct: 359 KEPSMPNIVLPTGMDEAQEEESAEKPSVAPQLWQQPKQEWQPPQSLVREEESWQSTSKPL 418

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ-----LGIACAQIHQNYIISQTTD 424
             ++   +  +    ++    E+ D ++  E                Q+H  YI +Q   
Sbjct: 419 IEEKAAHNEQEWDHHEEEFELEELDELQNIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDK 478

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G
Sbjct: 479 GLYMIDQHAAQERINYEYFRDKVGQVTQEVQELLVPYRIDLSLNEFLRVEEQLEELKKVG 538

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           +  E+FG  +  +R  P    K    +++ +++ +++       ++   E     M+C  
Sbjct: 539 LFLEQFGHQSFIVRSHPIWFPKGKETEIIDEMMQQVVKLKKVD-IKKLREEAAIMMSCKA 597

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++ + + + ++  LL E+    N   C HGRP  I     ++EK+F R
Sbjct: 598 SIKANQYLTNDQIFALLEELRTTSNPYTCPHGRPIIIHHSTYELEKMFKR 647


>gi|229092806|ref|ZP_04223944.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-42]
 gi|228690604|gb|EEL44385.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-42]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAVKQPTQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|322517656|ref|ZP_08070521.1| DNA mismatch repair protein HexB [Streptococcus vestibularis ATCC
           49124]
 gi|322123733|gb|EFX95318.1| DNA mismatch repair protein HexB [Streptococcus vestibularis ATCC
           49124]
          Length = 645

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 176/633 (27%), Positives = 305/633 (48%), Gaps = 44/633 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEAYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKAGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+     + +T LP   
Sbjct: 300 HPTKQEVRISKEKELMALISSAIAQSLREQDLIPDALENLAKSSTRGAAKSVQTSLPLKQ 359

Query: 357 -----------------------------------KYATSLTNTQEKLFLQENRLSTNDL 381
                                              K     +  Q +  + E+      L
Sbjct: 360 TNLYYDSSRNDFFVKPETVQEDIKPLVSESSVSSVKNKPQPSVKQAQRSVDESDSEHEKL 419

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
              +        + +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E
Sbjct: 420 DYKNKSKLKRMLENLTNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVKYE 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
             R+       + Q LL P + +    +   + E    L+++GI  E +G N   +RE P
Sbjct: 480 YYREKIGEVDSSLQQLLVPYLFEFSGSDYISLQEKMSLLNQVGIYLEPYGNNTFILREHP 539

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
             + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       LL
Sbjct: 540 IWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARDLL 598

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 VQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 631


>gi|114327127|ref|YP_744284.1| DNA mismatch repair protein mutL [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315301|gb|ABI61361.1| DNA mismatch repair protein mutL [Granulibacter bethesdensis
           CGDNIH1]
          Length = 619

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 221/611 (36%), Positives = 337/611 (55%), Gaps = 22/611 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS+  IN+IAAGE+IERP+  +KEL+EN+LDA ++R+   + GGG +  ++ D+G 
Sbjct: 12  RIRLLSDTTINRIAAGEVIERPAAVVKELVENALDAGATRIVVALEGGGITRIEVRDDGS 71

Query: 62  GMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GMT EE+ +A+QRH TSK++DD    I T GFRGEALPSIGA   L++ SR    +    
Sbjct: 72  GMTEEELALAIQRHATSKLTDDSLIRIATLGFRGEALPSIGAAGRLSITSRTAACDHAHS 131

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G ++ +V P +   GT + VRDLFF  PAR  FLK+ + E +     +RR+A + P
Sbjct: 132 ITVEGGRVGAVIPASGPQGTRIVVRDLFFATPARRKFLKTPRSEADQAEIAVRRLAFSAP 191

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F         + +   +       RI+ ++GE+     + ++ + + + L G+   P
Sbjct: 192 HVAFRCEIDGREIFDLPAATPQA----RIAALLGEEAAAAILPVSAERDTLLLGGFICAP 247

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T  R         +NGR V D  + + +R AY + IP GR+PVV L L + P  VDVNVH
Sbjct: 248 TLTRATGASQSFVVNGRPVTDPMLRTALRVAYRDVIPYGRHPVVALELTVPPEDVDVNVH 307

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAIN----------KKGISTSSVLSKKMI------SS 344
           PAK+ +RFR+   +R  II +I + +           + G   SS LS           S
Sbjct: 308 PAKTELRFRDAAAVRGLIIGAISRTLAAGVGGPVGQTENGGKASSTLSIPPPRLNISRPS 367

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
           +                     E     ++  +    + S   T  + + P        Y
Sbjct: 368 YTPTRGGGYAAAPPVRPHFGFAEAQLPLQDAPAARGAMSSAPETVQDRSAPAPPLPDPAY 427

Query: 405 QLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
            LG A AQ+   Y+I+   DG LV+VDQHAAHERL  E +R       + SQ LL PE++
Sbjct: 428 PLGAAVAQVLDTYVIAVAADGALVLVDQHAAHERLTHEALRSALLDGTVNSQALLLPEVV 487

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           ++   E   +++    L +LG+  E FGP A+ +R +PA+L  +++  LLRDI +E+ + 
Sbjct: 488 EMPPREATHLLDAASSLAKLGLDIEAFGPGAVLVRALPALLKPQSVSALLRDIAEELAEL 547

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +  L+ R++ ++A MAC+GSIR+GR++   EMN LLR+ME  P ++ C+HGRPT ++L
Sbjct: 548 GASIALESRLDAVIARMACHGSIRAGRRLTVPEMNALLRQMEATPRAATCSHGRPTVLRL 607

Query: 584 KLSDIEKLFGR 594
             ++IE LFGR
Sbjct: 608 SKAEIESLFGR 618


>gi|218898868|ref|YP_002447279.1| DNA mismatch repair protein MutL [Bacillus cereus G9842]
 gi|226723027|sp|B7ITM0|MUTL_BACC2 RecName: Full=DNA mismatch repair protein mutL
 gi|218541786|gb|ACK94180.1| DNA mismatch repair protein MutL [Bacillus cereus G9842]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 184/648 (28%), Positives = 298/648 (45%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T+ GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTITGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HPAK  +RF     +   I +++Q A  K  +   +                        
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 336 --VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                  ++     D   +  LP    +      K   Q  +    +       T     
Sbjct: 359 KEPSMPDIVLPTGMDEKQEEPLPVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTRPIME 418

Query: 394 DPVEESEATHYQ---------------------------LGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|52141721|ref|YP_085109.1| DNA mismatch repair protein [Bacillus cereus E33L]
 gi|81686628|sp|Q636Q8|MUTL_BACCZ RecName: Full=DNA mismatch repair protein mutL
 gi|51975190|gb|AAU16740.1| DNA mismatch repair protein, MutL family [Bacillus cereus E33L]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWNSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|49479185|ref|YP_037829.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|81828232|sp|Q6HF47|MUTL_BACHK RecName: Full=DNA mismatch repair protein mutL
 gi|49330741|gb|AAT61387.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQTAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPDIILPMGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 394 DPVEESEATHYQ---------------------------LGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVREIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|47568272|ref|ZP_00238975.1| DNA mismatch repair protein HexB [Bacillus cereus G9241]
 gi|47555100|gb|EAL13448.1| DNA mismatch repair protein HexB [Bacillus cereus G9241]
          Length = 647

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQGAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|228922483|ref|ZP_04085785.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837197|gb|EEM82536.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HPAK  +RF     +   I +++Q A  K  +   +     KK      Q+     H   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 358 YATSLTN------------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
              S+ +                           K   Q  +    +       T     
Sbjct: 359 KEPSMPDIVLPTGMDAKQEEPEAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIIE 418

Query: 394 DPVEESEATHYQ---------------------------LGIACAQIHQNYIISQTTDGL 426
           +P++E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIQEKKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|194337682|ref|YP_002019476.1| DNA mismatch repair protein MutL [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|238693415|sp|B4SGC3|MUTL_PELPB RecName: Full=DNA mismatch repair protein mutL
 gi|194310159|gb|ACF44859.1| DNA mismatch repair protein MutL [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 626

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/628 (29%), Positives = 311/628 (49%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + + N+I+AGE+++RP+  +KEL+EN++DA + ++   I   GK   +I DNG 
Sbjct: 3   RIARLPDIVANKISAGEVVQRPASVVKELLENAIDAGADKITVAIKDAGKELIRIVDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  + V+R  TSKI+  DD  ++ + GFRGEAL SI +VSH  L +R  +   G 
Sbjct: 63  GMLREDALLCVERFATSKITGVDDLDSLQSLGFRGEALASISSVSHFELKTRTAKATLGL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  +     V    GT + VR+LF+ +PAR  FLKS   E N I ++++  A+AY
Sbjct: 123 RLRYEGGVLVEESGVQGEQGTTISVRNLFYNVPARRKFLKSNATEYNHIFEIVKSFALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ +   +     + +       +  ER++   G+DF  + +EL+E+++ ++++GY G 
Sbjct: 183 PEIEWRMYSDDEELFHVK----RPDILERLNVFYGDDFAASMIELSEENDYLSIKGYLGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +      Y F+N R VQ++ +   ++ AY + +   + P V+L L IDP ++DVNV
Sbjct: 239 PAMQKRRKLDQYFFVNRRVVQNRMLSQAVQQAYGDLLVERQTPFVLLFLTIDPSRIDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------KKMISSFHQDNAP 351
           HPAK  IRF +   +RN     I++AI     S   V +        +   S+F + + P
Sbjct: 299 HPAKMEIRFDDERNVRNMFYPVIKRAIQLHDFSPDLVSTECDQLSSLQPQNSAFRKFSFP 358

Query: 352 KTHLPKYATS--LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV------------- 396
                   T     N +E    +            +        D               
Sbjct: 359 DIPHRSITTGDLYRNYREGAVDEPAISRVASAHQGEMFPRHSSADYALAGSGLREGDEGL 418

Query: 397 ----------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                     ++      ++     Q+H  Y+I Q   GL+I+DQH AHER+++E+    
Sbjct: 419 SSILLAPLYDDDVVPNPKEVEPKIWQLHNKYLICQIKTGLMIIDQHVAHERVLYERAVDV 478

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
            N     SQ LL P+ ++    E  +  E  EDL+RLG     FG   I I  +P  +  
Sbjct: 479 MNQNVPNSQQLLFPQKVEFRPWEYEIFEEIREDLYRLGFNLRLFGNKTIMIEGVPQDVKP 538

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            +   +L+D+I E  D+++   L D+ +N+  + +C  +I +G+K+   EM  L+  +  
Sbjct: 539 GSEVTILQDMIAEYQDNASKLKL-DKRDNLAKSYSCRNAIMAGQKLSLEEMRSLIDNLFA 597

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                 C HGRP  IKL L  ++K+FGR
Sbjct: 598 TREPYSCPHGRPVIIKLSLDQLDKMFGR 625


>gi|301055258|ref|YP_003793469.1| DNA mismatch repair protein [Bacillus anthracis CI]
 gi|300377427|gb|ADK06331.1| DNA mismatch repair protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWESNEEDFELEELEEEVREIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|196038472|ref|ZP_03105781.1| DNA mismatch repair protein MutL [Bacillus cereus NVH0597-99]
 gi|228986912|ref|ZP_04147039.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229197879|ref|ZP_04324595.1| DNA mismatch repair protein mutL [Bacillus cereus m1293]
 gi|196030880|gb|EDX69478.1| DNA mismatch repair protein MutL [Bacillus cereus NVH0597-99]
 gi|228585597|gb|EEK43699.1| DNA mismatch repair protein mutL [Bacillus cereus m1293]
 gi|228772861|gb|EEM21300.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|228940846|ref|ZP_04103406.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973767|ref|ZP_04134344.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980322|ref|ZP_04140633.1| DNA mismatch repair protein mutL [Bacillus thuringiensis Bt407]
 gi|228779427|gb|EEM27683.1| DNA mismatch repair protein mutL [Bacillus thuringiensis Bt407]
 gi|228785919|gb|EEM33921.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818860|gb|EEM64925.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941481|gb|AEA17377.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 184/648 (28%), Positives = 298/648 (45%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------------------- 333
           HPAK  +RF     +   I +++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 334 --------------------------SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
                                        L +     +    +       +  S     E
Sbjct: 359 KEPSMPDIVLPTGMDAKQEEPQAVKQPPQLWQPPKQEWQPPQSLIKEEQSWQPSTRPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|218290140|ref|ZP_03494302.1| DNA mismatch repair protein MutL [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239849|gb|EED07038.1| DNA mismatch repair protein MutL [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 628

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/628 (28%), Positives = 312/628 (49%), Gaps = 39/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ + + + +QIA+GE++ RP+  +KEL+ENSLDA ++R+E  +A GG +   + D+G 
Sbjct: 3   KIQVMPKVMADQIASGEVVARPASCVKELVENSLDAGATRIEVSLAEGGIACVTVVDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +A  RH TSK+ +  D + I T GFRGEAL +I +V+ + L++R     +G 
Sbjct: 63  GMSPEDAVLAFHRHATSKVHEPRDLARIRTLGFRGEALAAIASVARVRLITRARGEESGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +I    PV    GT +EVRDLFF  PARL +L+S Q E     +V++R ++A+
Sbjct: 123 LVRVEGGEIHPPEPVGAPFGTTMEVRDLFFNTPARLKYLRSAQTEQARSVEVVQRESLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F   T    R  +      G+  E  + + G       +E++  + +  L+GY G 
Sbjct: 183 PEVAFVCRTE---RQVLFQTPGRGDAREVWAALYGVGEARMLLEVHGATGDYALRGYVGR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R +    Y+FINGR V++  +   +  AY E + +GRYPV  L LE+DP  VD NV
Sbjct: 240 PTQARSSRQHGYLFINGRPVRNPAVQQAVERAYGERLMVGRYPVYALYLEMDPALVDPNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-----QDNAPKTH 354
           HP K  +R      + + +  +++ A++   ++ +  +      +        + +    
Sbjct: 300 HPQKWEVRLSEERDVCDLVESAVRAALDNVMLTAAPRVRTSAPLASPVPLNLPEESAGPR 359

Query: 355 LPKYATSLTNTQEK----------------------------LFLQENRLSTNDLLPSDD 386
             + + S    Q+K                            L ++E+  +  ++     
Sbjct: 360 EMRQSPSPAAAQKKRPQVLTRWPSFGEGSGRTPAPREAWESALAVRESAAAQVEIEHETR 419

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
            + +E +      E           Q  + YI+++  + L I+DQHAAHER+++E +   
Sbjct: 420 ASQAEGDGRDVPQERPADWRLRPIGQALRMYILAEDGNDLYIIDQHAAHERVLYEDLLDA 479

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
           +   +I    LLTP  + L       +M   E+L  LG + + FG + I +R IP     
Sbjct: 480 WQQGEIQPMPLLTPLELSLTPSAFEEVMARREELLALGFEIDPFGAHTILVRTIPDSWQG 539

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            +   LLRD++D++       T +D +   LAT AC  +I++   +   EM  L R + +
Sbjct: 540 LDYAALLRDVLDDLASMGPKATARDIMHR-LATRACKAAIKAHDSLTMPEMEALCRRLTR 598

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   C HGRP F+++   ++ K F R
Sbjct: 599 ARDPYHCPHGRPIFLRMSERELAKSFRR 626


>gi|229031398|ref|ZP_04187399.1| DNA mismatch repair protein mutL [Bacillus cereus AH1271]
 gi|228729893|gb|EEL80872.1| DNA mismatch repair protein mutL [Bacillus cereus AH1271]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 184/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  ++  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAVQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPDIILPTGMDEKREEPLAAKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPITE 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWNSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229162703|ref|ZP_04290660.1| DNA mismatch repair protein mutL [Bacillus cereus R309803]
 gi|228620585|gb|EEK77454.1| DNA mismatch repair protein mutL [Bacillus cereus R309803]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLMIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHTKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    L   Q     Q  +           +       T     
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAIKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWSSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229061371|ref|ZP_04198717.1| DNA mismatch repair protein mutL [Bacillus cereus AH603]
 gi|228717910|gb|EEL69556.1| DNA mismatch repair protein mutL [Bacillus cereus AH603]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 184/648 (28%), Positives = 303/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIRQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPIGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HPAK  +RF     +   I +++Q A  K  +   + ++ K             F     
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQGQFQFEHTKP 358

Query: 351 PKTHLP----------KYATSLTNTQEKLFLQENRLSTN-------DLLPSDDPTYSEDN 393
            +  +P          K    +   Q     Q  +           +       T +   
Sbjct: 359 KEPSMPNIVLPTGMDEKREEPMPVKQPAQLWQPPKQEWQPPQSLVREEQNWQPSTKTIIE 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q  +GL
Sbjct: 419 EPIREEKSWNSNEEDFELEELEEEVGEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|312863945|ref|ZP_07724182.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus vestibularis F0396]
 gi|311100511|gb|EFQ58717.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus vestibularis F0396]
          Length = 645

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 176/633 (27%), Positives = 305/633 (48%), Gaps = 44/633 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEAYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKAGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+     + +T LP   
Sbjct: 300 HPTKQEVRISKEKELMVLISSAIAQSLREQDLIPDALENLAKSSTRGAAKSVQTSLPLKQ 359

Query: 357 -----------------------------------KYATSLTNTQEKLFLQENRLSTNDL 381
                                              K     +  Q +  + E+      L
Sbjct: 360 TNLYYDSSRNDFFVKPETVQEDIKPLVSESSVSSVKNKPQPSVKQAQRSVDESDSEHEKL 419

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
              +        + +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E
Sbjct: 420 DYKNKSKLKRMLENLTNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVKYE 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
             R+       + Q LL P + +    +   + E    L+++GI  E +G N   +RE P
Sbjct: 480 YYREKIGEVDSSLQQLLVPYLFEFSGSDYISLQEKMSLLNQVGIYLEPYGNNTFILREHP 539

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
             + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       LL
Sbjct: 540 IWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARDLL 598

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 VQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 631


>gi|229157347|ref|ZP_04285425.1| DNA mismatch repair protein mutL [Bacillus cereus ATCC 4342]
 gi|228626074|gb|EEK82823.1| DNA mismatch repair protein mutL [Bacillus cereus ATCC 4342]
          Length = 647

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 185/648 (28%), Positives = 300/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------------------- 333
           HPAK  +RF     +   I +++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKNKEKDESVQEQFQFEHAKP 358

Query: 334 --------------------------SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
                                     S+ L +     +    +       +  S     E
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPLAVKQSAQLWQPPKQEWQPPQSLVREEQSWQPSTKPIME 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|229104332|ref|ZP_04235001.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-28]
 gi|228679030|gb|EEL33238.1| DNA mismatch repair protein mutL [Bacillus cereus Rock3-28]
          Length = 647

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  +      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDVIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLIPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  ++  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAVQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------------------- 333
           HPAK  +RF     +   I +++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHTKP 358

Query: 334 --------------------------SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
                                      + L +     + Q  +       +  S     E
Sbjct: 359 KEPQMPNIVLPTDMDEKQEERTTVKQPAQLWQPPKQEWQQPQSLIREEQSWQPSSKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E   + N+     +    E  +  E E             Q+H  YI +Q  +GL
Sbjct: 419 EPIREEKSWNNNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDNGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|194014279|ref|ZP_03052896.1| DNA mismatch repair protein MutL [Bacillus pumilus ATCC 7061]
 gi|194013305|gb|EDW22870.1| DNA mismatch repair protein MutL [Bacillus pumilus ATCC 7061]
          Length = 633

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/634 (29%), Positives = 311/634 (49%), Gaps = 46/634 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS+ + N+IAAGE++ERP+  +KEL+EN++DA S+ +E  +   G S  ++ DNG 
Sbjct: 3   KIIQLSDDLSNKIAAGEVVERPASVVKELMENAIDASSTVIEIDVEEAGLSSIRMIDNGV 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+  +A QRH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GIDAEDCKLAFQRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEMKTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G KI S +  +   GT + V +LF+  PARL ++K+   E   I+DV+ R+A+A+
Sbjct: 122 HLVLQGGKIISEKKTSSRRGTEIVVTNLFYNTPARLKYMKTVHTELGNISDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       V L+ +S +  ++GY  +
Sbjct: 182 PEVSIRLRHQGK---VLLQTNGNGDVRHVLAAIYGTAVAKKMVPLHVQSLDFEVKGYISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V+   ++  +   Y   +P+GR+P+  + +++DP  VDVNV
Sbjct: 239 PEVTRASRNYMSSVVNGRYVKHFPLVKAVHEGYHTLLPIGRHPITFIEMKMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------------- 345
           HP+K  +R      +   I Q I+    K+ +  S+ + KK                   
Sbjct: 299 HPSKLEVRLSKEQELHELIKQGIKDVFQKQQLIPSASVPKKAPMPAIKNEQQSLTFDAKK 358

Query: 346 ---HQDNAPKTHLPKYATSL-----------------TNTQEKLFLQENRLSTNDLLPSD 385
               +   P ++ P+   S+                 T     +F +E       L  S 
Sbjct: 359 GNTSEAETPLSYQPEPLESVLYETSHTEAYGMPNQEKTEPSSPVFYEEASSERVQLEESA 418

Query: 386 DPTYSEDNDPVEE-----SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                E+++  E+     SE     +     Q+H  YI++Q   GL I+DQHAA ER+ +
Sbjct: 419 ASLEYEESELREDAAEAISENERVPVMYPIGQMHGTYILAQNERGLYIIDQHAAQERIKY 478

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E  R+     K   Q +L P      + +  +I EH E L ++G+  E FG  +  +R  
Sbjct: 479 EYYREKVGEIKQEVQEMLVPLTFHYSKNDMLIIEEHKEILTKVGVFLEPFGSGSYIVRSH 538

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P    K    +L+ +II++++D      ++   E     M+C GSI++ R +++ E+  L
Sbjct: 539 PQWFPKGEEAELIEEIIEQVLDEKRVD-IKKLREEAAIMMSCKGSIKANRHLRNDEIKAL 597

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L E+ +  +   C HGRP  I     ++EK+F R
Sbjct: 598 LDELRQTKDPFTCPHGRPIIIHHSTYEMEKMFKR 631


>gi|324327662|gb|ADY22922.1| DNA mismatch repair protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 647

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HPAK  +RF     +   I +++Q A  K  +   +     KK      Q+     H   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 358 YATSLTN------------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
              S+ +                           K   Q  +    +       T S   
Sbjct: 359 KEPSMPDIILPTGMDEKQEEPQAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKSIIE 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWNSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|319778435|ref|YP_004129348.1| DNA mismatch repair protein MutL [Taylorella equigenitalis MCE9]
 gi|317108459|gb|ADU91205.1| DNA mismatch repair protein MutL [Taylorella equigenitalis MCE9]
          Length = 584

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 201/595 (33%), Positives = 333/595 (55%), Gaps = 20/595 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +K+I+QIAAGE+IERPS  +KEL+EN++DA+S+ +E  + GGG     I DNG 
Sbjct: 6   QIHLLPDKLISQIAAGEVIERPSSVVKELVENAVDAQSTEIEIRLDGGGIRRIYIRDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A+ RH TSKI    +   + + GFRGEAL SI +++ L+++SR   +    
Sbjct: 66  GIPREELPLALTRHATSKIRGLSELETVKSMGFRGEALASIASIARLSIVSRTGDSKNAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I  S  +I        + GT VEV  +F  +PAR  FLK+E  E     D+I+++A+A 
Sbjct: 126 KIDGSSLEI---AVANGSQGTTVEVNQIFDEVPARRKFLKTEATEFAHSIDIIKKIALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F                    F  RI +V+G DF++   +++E  N   L+G    
Sbjct: 183 PDITFRVFHNDKAYANWIASP----FIHRIREVVGADFLSKVFKIDESINICRLRGLIIK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+     +++ Y+F+N R V+D+ +   ++ AY++ +   R P  +L ++IDP  VDVNV
Sbjct: 239 PSEASSKSDKQYIFVNSRFVRDRSLAHAVKNAYSDVLHGDRQPSYILFVDIDPSLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ IRFR+ + I +F+ +SI+  + K      S+ +        Q+N       K  
Sbjct: 299 HPAKNEIRFRDQSTIYSFVQKSIKATLAKSSGVQESIYT-------PQENHNANFPKKIT 351

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              T TQ+   LQ     T   +       +   + +E+       +G A  Q+H  YI+
Sbjct: 352 PQYTPTQKSFDLQTLESYTPLFISEPQQIKNVTPNSLEDE----LPMGFAIGQLHGIYIL 407

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  +GL+IVD HAAHER+++EK++       I  Q LL P  +++ E + +LI E+ E 
Sbjct: 408 AQNKNGLIIVDMHAAHERVVYEKLKNLAFQKNIEVQELLIPIAVNIPEKQLSLIDEYSEF 467

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  +G+   + GP+++A+  +P++LSK NI  +++++ +++     +  L+++  +IL T
Sbjct: 468 LESVGLYMRQTGPSSVAVTAVPSLLSKGNISLMVQEVFEDLEKYGESTILEEKRNHILGT 527

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC+ + R+   +   EMN LLR+ME    +  CNHGRPT+    + D++KLF R
Sbjct: 528 MACHNAFRANDNISLTEMNALLRQMEITDRADLCNHGRPTWYSWTIQDLDKLFMR 582


>gi|222097214|ref|YP_002531271.1| DNA mismatch repair protein [Bacillus cereus Q1]
 gi|254766159|sp|B9IV58|MUTL_BACCQ RecName: Full=DNA mismatch repair protein mutL
 gi|221241272|gb|ACM13982.1| DNA mismatch repair protein MutL [Bacillus cereus Q1]
          Length = 647

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---VLSKKMISSFHQDNAPKTHLP 356
           HPAK  +RF     +   I +++Q A  K  +   +      K+   S  +    +   P
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFKFEHAKP 358

Query: 357 KYATSLT-----------------------NTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
           K  +                              K   Q  +    +       T S   
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQPAQLWQPPKQEWQPPQSLVREEQSWQPSTKSIIE 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWNSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|206977890|ref|ZP_03238778.1| DNA mismatch repair protein MutL [Bacillus cereus H3081.97]
 gi|217961189|ref|YP_002339757.1| DNA mismatch repair protein [Bacillus cereus AH187]
 gi|229140409|ref|ZP_04268964.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-ST26]
 gi|226723029|sp|B7HLA2|MUTL_BACC7 RecName: Full=DNA mismatch repair protein mutL
 gi|206743890|gb|EDZ55309.1| DNA mismatch repair protein MutL [Bacillus cereus H3081.97]
 gi|217067416|gb|ACJ81666.1| DNA mismatch repair protein MutL [Bacillus cereus AH187]
 gi|228642970|gb|EEK99246.1| DNA mismatch repair protein mutL [Bacillus cereus BDRD-ST26]
          Length = 647

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 300/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HPAK  +RF     +   I +++Q A  K  +   +     KK      Q+     H   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 358 YATSLTN------------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
              S+                             K   Q  +    +       T S   
Sbjct: 359 KEPSMPEIVLPTGMDEKQEEPQAVKQSAQLWQPPKQEWQPPQSLVREEQSWQPSTKSIIE 418

Query: 394 DPVEESEAT---------------------------HYQLGIACAQIHQNYIISQTTDGL 426
           +P+ E ++                                     Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWNSNDEDFELEELEEEVQEIEEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|228909592|ref|ZP_04073415.1| DNA mismatch repair protein mutL [Bacillus thuringiensis IBL 200]
 gi|228849881|gb|EEM94712.1| DNA mismatch repair protein mutL [Bacillus thuringiensis IBL 200]
          Length = 647

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/648 (28%), Positives = 301/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T+ GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTITGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---------------------- 337
           HPAK  +RF     +   I +++Q A  K  +   + +                      
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 338 --------------------------SKKMISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                       +      Q+  P   L      + TS     E
Sbjct: 359 KESSMPDIVLPTGMDEKQEEPQAVKQPAQHWQPPKQEWQPPQSLVREEQSWQTSTKPIME 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIREEKSWDSNEEDFELEELEVEVQEIKEIEMNGNDLPPLYPIGQMHGTYIFAQNEKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|322374232|ref|ZP_08048764.1| DNA mismatch repair protein HexB [Streptococcus sp. C150]
 gi|321276836|gb|EFX53909.1| DNA mismatch repair protein HexB [Streptococcus sp. C150]
          Length = 647

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 309/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEAYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKGGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS---------------- 343
           HP K  +R      +   I  +I +++ ++ +   ++ +    S                
Sbjct: 300 HPTKQEVRISKEKELMALISSAIAQSLREQDLIPDALENLAKSSTRGATKPVQTSLPLKQ 359

Query: 344 -----------------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND------ 380
                            +  +D  P     K   +    + K  +++ + S ++      
Sbjct: 360 TNLYYDSSRNDFFVKPETVQEDIKPLVSESKSTATPDENKAKPTVKQAQRSVDEGDNEHE 419

Query: 381 -LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            L   +        + ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 KLDYKNKSKMKRMLENLDNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E    L+++GI  E +G N   +RE
Sbjct: 480 YEYYREKIGEVDSSLQQLLVPYLFEFSGSDYISLQEKMPLLNQVGIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLVQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|78188128|ref|YP_378466.1| DNA mismatch repair protein [Chlorobium chlorochromatii CaD3]
 gi|123757053|sp|Q3AUA2|MUTL_CHLCH RecName: Full=DNA mismatch repair protein mutL
 gi|78170327|gb|ABB27423.1| DNA mismatch repair protein MutL [Chlorobium chlorochromatii CaD3]
          Length = 644

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 181/648 (27%), Positives = 309/648 (47%), Gaps = 59/648 (9%)

Query: 1   MKI-RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M I  +L + + N+I+AGE+++RP+  +KEL+EN++DA ++++   I   GK   +I DN
Sbjct: 1   MPIITRLPDSVANKISAGEVVQRPASVVKELLENAIDAGATKISVTIKDAGKELIRIADN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM  ++  + V+R  TSKI  +DD   +HT GFRGEAL SI +VSH  L +R      
Sbjct: 61  GVGMNRDDALLCVERFATSKIKSADDLDALHTLGFRGEALASICSVSHFELKTRQADATL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G      G  +     V    GT   VR+LF+ +PAR  FLKS   E + + ++++   +
Sbjct: 121 GLLFRYDGGSLVEELEVQAEQGTSFSVRNLFYNVPARRKFLKSNATEYHHLFEIVKSFTL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           AYP++ +         +       N +  ER++   G+DF ++ +E+ E+++ + + GY 
Sbjct: 181 AYPEIEWRMVNDDEELFNFK----NNDVLERLNFYYGDDFASSLIEVAEQNDYLPIHGYL 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   +    + Y FIN R VQ++ +L  ++ AY + +   + P V+L L IDP ++DV
Sbjct: 237 GKPALQKKRKLEQYFFINRRLVQNRMLLQAVQQAYGDLLVERQTPFVLLFLTIDPSRIDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---------- 347
           NVHPAK  IRF +   +R+     I++A+     ST+  + +   S+             
Sbjct: 297 NVHPAKLEIRFDDERQVRSMFYPVIKRAVQLHDFSTNISVIEPFASASEPFVGSSSQPIF 356

Query: 348 ----DNAPKTHLPKYATSLTNTQEKLFLQ------------------------------- 372
                 AP+         L++  E+   +                               
Sbjct: 357 SSTSSQAPRMGGGSRRFDLSDAPERAITKNELYRNYREGAFSSPSVASYDAPSPLQQGGL 416

Query: 373 ------ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                 E  L     +               ++   H ++     Q+H  Y+I Q   GL
Sbjct: 417 FALASAEESLFGAQAVHEASENIEAFQLSPLDNIVEHKEVEPKIWQLHNKYLICQIKTGL 476

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           +I+DQH AHER+++E+  +        +Q LL P+ ++    E  +  E  +DL+RLG  
Sbjct: 477 MIIDQHVAHERVLYERALEVMQQNVPNAQQLLFPQKVEFRAWEYEVFEEIRDDLYRLGFN 536

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
              FG   + I  +P  +   +   +L+D+I +  +++T   L+ R +N+  + +C  +I
Sbjct: 537 VRLFGNRTVMIEGVPQDVKSGSEVTILQDMITQYQENATKLKLE-RRDNLAKSYSCRNAI 595

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +G+K+   EM  L+  +        C HGRP  IKL L  ++K+FGR
Sbjct: 596 MTGQKLSMEEMRSLIDNLFATREPYTCPHGRPIIIKLSLDQLDKMFGR 643


>gi|225378111|ref|ZP_03755332.1| hypothetical protein ROSEINA2194_03771 [Roseburia inulinivorans DSM
           16841]
 gi|225210112|gb|EEG92466.1| hypothetical protein ROSEINA2194_03771 [Roseburia inulinivorans DSM
           16841]
          Length = 647

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 189/649 (29%), Positives = 313/649 (48%), Gaps = 59/649 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L+++ I++IAAGE++ERPS  +KEL+EN++DA+++ V   I  GG SF +ITDN
Sbjct: 1   MPEIMLLNQETIDKIAAGEVVERPSSVVKELVENAIDAKATAVTVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++P+A  RH TSKI   +D  +IH+ GFRGEAL SI AV+ + L+++  +  T
Sbjct: 61  GCGIEKKQVPIAFLRHSTSKIRSVEDLLSIHSLGFRGEALSSIAAVAQVELITKTYEELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K      +    GT   VR+LF+ +PAR  FLK+ Q E   I+D++ RMA+
Sbjct: 121 GTRYVIEGSKEIENEEIGAPEGTTFIVRNLFYNVPARRKFLKTAQTEAGYISDLMERMAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P VSF F      +      S NGN  + I  + G D  +  +++  ++    L+G+ 
Sbjct: 181 SHPDVSFKFINNGQTKLH---TSGNGNEKDLIYHIYGRDITSAVLKVEHETELFKLRGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    FINGR ++   I  +I  AY   +   +YP  VL  E+D   +DV
Sbjct: 238 GKPMISRGNRNYENYFINGRYIKSALIAKSIEEAYKGFMMQHQYPFCVLYFEMDSELLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHP K  +RF     I + + + I+  I+ +       ++++   +             
Sbjct: 298 NVHPTKMELRFSQNEEIYHSLFEIIRDTISHRDFIPEVPVTEEKKETIPPVPKHTPEPFE 357

Query: 347 -----QDNAPKTHLPKYATSLTNTQEKLFLQE---------NRLSTNDLLPSDDPTYSED 392
                QD   +      A+ LT  +E LF +          ++    ++        +  
Sbjct: 358 IRRRGQDAFFEKMKQTSASPLTVQEENLFAKPLAAEAETNTSKEPIAEIHSEQPTLENNF 417

Query: 393 NDPVEESEATH---------------------------YQLGIACAQIHQNYIISQTTDG 425
            + V E                                 +      Q+   Y + +  D 
Sbjct: 418 KEIVSEIHDIESTPQETAPIYEQQNLEQLDSHFLTKDARKKHKIIGQLFDTYWLIEYEDK 477

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I+DQHAAHE++++E+  +  +    TSQT+  P I+ L + E   +  ++  L   G 
Sbjct: 478 LFIIDQHAAHEKVLYERTMKKISEKTFTSQTISPPIILTLNQDEVQALETYEAQLSMFGY 537

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
           + E FG    AI  IPA  +  ++  +  +++D+  + S        +E + A+M+C  +
Sbjct: 538 EIEPFGGKEYAITAIPADFTDIDMKTMFIEMLDDFANISGKDAPNLIMEKV-ASMSCKAA 596

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    +   E+  L+ E+ +  N   C HGRPT I +   +IEK F R
Sbjct: 597 VKGNNHLSRPEIEALIDELLELDNPYNCPHGRPTIISMTKYEIEKKFRR 645


>gi|309792273|ref|ZP_07686745.1| DNA mismatch repair protein MutL [Oscillochloris trichoides DG6]
 gi|308225814|gb|EFO79570.1| DNA mismatch repair protein MutL [Oscillochloris trichoides DG6]
          Length = 609

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 185/612 (30%), Positives = 309/612 (50%), Gaps = 23/612 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   I  QIAAGE++ERP+  IKEL+EN+LDA +SR+   + GGG    ++ D+G
Sbjct: 1   MPIRLLDATIAAQIAAGEVVERPASVIKELVENALDAGASRITIEVRGGGLRELKVQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ S E+ +A +RH TSK+  +DD  NI T GFRGEALPSI +V+ L  ++R      G
Sbjct: 61  CGIASHEVELAFERHATSKLQVADDLFNIRTLGFRGEALPSIASVAQLVCITRNANEEVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G  + +  P   +PGT + VR+LF+ +P R  +L+SE  E + I+ V+++ A+A
Sbjct: 121 TELRIAGGDLQARVPCGCSPGTSISVRNLFYNLPVRREYLRSEATELSAISAVVQQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS----NEITLQ 234
           YP+V F+         +    S +G+    + ++ G D     + +  +       + + 
Sbjct: 181 YPEVRFSMILDGRLALQ---TSGDGDRRSVLIEIYGLDIARQLLPVEAEVGEDLQAVRVS 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDK-FILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           G    P   R + +  +VF+N R +Q +  +++ +  AY   +  GR+P+V L + + P 
Sbjct: 238 GLISPPELTRSSRSYIHVFVNRRALQPRGPLVAVVEDAYHTMLMKGRHPLVALDIRVHPT 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------SFHQ 347
            VDVNVHP KS ++FR    + + I +++++A+           +    S         Q
Sbjct: 298 AVDVNVHPTKSEVKFRFGPQVHSAIGRAVREALVAGAGIPDWADTNYDPSGVQRRFELRQ 357

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLS-----TNDLLPSDDPTYSEDNDPVEESEAT 402
              P       A++         ++ +R       T           + +     +    
Sbjct: 358 LGQPSRPAEPPASAWGVGAAAWDVERSRWDVGGGYTAPAPVDQPEAAAPEIIAAPQPSPA 417

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
                    Q+   YI+++  +G+ ++DQHAAHER+ +E++     S  I SQ LL P +
Sbjct: 418 ALPPLRVVGQVGLTYIVAEAPEGMYLIDQHAAHERITYERLMTQRASGAIESQGLLLPLV 477

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           + L     AL++ + ++L  LG   E +G   + +R  PA L    I   L ++ D +  
Sbjct: 478 VPLAPASSALLLGYPDELAALGFTLEEWGEG-VRVRSAPATLPSDEIAPALTELADHLAG 536

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              +    DR E IL T+AC+ S+R+G+ +   EM +LLR++E   +   C HGRPT I 
Sbjct: 537 RGGSTP-SDRYEEILITLACHTSVRAGQALSHEEMRQLLRQLEACISPRTCPHGRPTMIL 595

Query: 583 LKLSDIEKLFGR 594
           L  + +E  FGR
Sbjct: 596 LSPAQLEHQFGR 607


>gi|329924184|ref|ZP_08279384.1| DNA mismatch repair protein MutL [Paenibacillus sp. HGF5]
 gi|328940834|gb|EGG37146.1| DNA mismatch repair protein MutL [Paenibacillus sp. HGF5]
          Length = 659

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 178/658 (27%), Positives = 295/658 (44%), Gaps = 70/658 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E I NQIAAGE++ERP+  +KEL+EN++DA S++++  +  GG    ++TDNG G
Sbjct: 4   IRILDEHIANQIAAGEVVERPASVVKELVENAIDAGSTKIDVSVEEGGLDSIRVTDNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+   A  RH TSKI++  D   I + GFRGEALPSI AVS + L++   Q+  G +
Sbjct: 64  IDPEDCETAFYRHATSKIAEGRDLFQITSLGFRGEALPSIAAVSKVRLVTSNAQDGRGRK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  +      A   GT   V++LF+  PARL ++K+ Q E   I+D + R+A++ P
Sbjct: 124 IEIEGGHLRVNEETAAPRGTDFLVKELFYNTPARLKYMKTIQTELGHISDYMYRLALSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT     +    +     NG+  + I+ V G       +    ++ + TL GY   P
Sbjct: 184 DIAFTLRHNGN---SLLQTLGNGDALQVIAAVYGTQSAKAMLPFEAENMDYTLSGYISRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + R N N   + INGR +++  ++  I   Y   +P+ R+P+VV+ L + P  +DVNVH
Sbjct: 241 DYTRANRNGMSLIINGRYIRNYGLMQAILRGYHTLLPINRFPLVVIQLSMHPSLIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---------SSVLSKKMISSFHQDN-- 349
           P+K  +RF     +  F+ + ++K + ++ +           S     +   SF Q    
Sbjct: 301 PSKLEVRFSKEQELFAFVEEEVRKVLQQEILIPRPAKQNIGKSDNAYIQEQLSFPQAQGH 360

Query: 350 -------------------------------------------APKTHLPKYATSLTNTQ 366
                                                       P   +  Y      T 
Sbjct: 361 VGAARGGQDRDLEIPGSGDRSAGGITPPPTPPAAWPDKQSLAPPPSGTMRSYGDGTAETA 420

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES----------EATHYQLGIACAQIHQN 416
               ++E   S++      +   S  N  V +           E   +       Q H  
Sbjct: 421 AASQMRETAASSSYRSDYRNDAKSGGNPAVTKEWLQAVSGPAPEIPPFPELTLIGQHHGT 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y+I+Q   GL ++DQHAAHER+ +E   + F +    SQ LL P  ++    E   + E 
Sbjct: 481 YLIAQNDTGLYLIDQHAAHERINYEYYYEQFGNPADASQELLLPITLEFTSSESEKVKER 540

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
                ++G+  E FG +   +R  P    K     ++ ++ + +++  T   +    E  
Sbjct: 541 LHWFEKVGVYMEFFGGHTFLVRSHPFWFPKGEEKAIIEEMAEWVLNERTID-IAKLRETS 599

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               +C  SI++ +K+   E   L++ +        C HGRP  +     D+EK+F R
Sbjct: 600 SIMCSCKASIKANQKLTEQEAMTLIQRLGACRQPYTCPHGRPIVVSFSAYDLEKMFKR 657


>gi|229000592|ref|ZP_04160132.1| DNA mismatch repair protein mutL [Bacillus mycoides Rock3-17]
 gi|229006014|ref|ZP_04163703.1| DNA mismatch repair protein mutL [Bacillus mycoides Rock1-4]
 gi|228755213|gb|EEM04569.1| DNA mismatch repair protein mutL [Bacillus mycoides Rock1-4]
 gi|228759147|gb|EEM08153.1| DNA mismatch repair protein mutL [Bacillus mycoides Rock3-17]
          Length = 643

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 183/644 (28%), Positives = 294/644 (45%), Gaps = 56/644 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELVTSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIMQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         + +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLAAIYSIQVAKKLIPIEAESLDFTIRGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYISTIVNGRYVRNYVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HPAK  +RF     +   I +++Q A  K  +                            
Sbjct: 299 HPAKLEVRFSKEQELLQLIEKTLQDAFKKIQLIPDAGVTSKKKEKDESVQEQFHFEHTKP 358

Query: 335 ----------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                          +           K  L +         E L  +EN    +  +  
Sbjct: 359 KEVPLPNIVLPTGMDEKQEEIQAKPQNKNLLWQPPKQEWQPPESLVKEENSWQLSKSMIG 418

Query: 385 DDPTYSEDNDPVEES--------------EATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
                  + D  EE                           Q+H  YI +Q   GL ++D
Sbjct: 419 KSVQDGNEWDNSEEDFELEEVAEIQEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGLYMID 478

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAA ER+ +E  R          Q LL P  IDL   E   + E  E++ ++G+  E+F
Sbjct: 479 QHAAQERINYEYFRDKVGQVTREVQELLVPYRIDLSLTEFLRVEEQLEEVKKVGLFLEQF 538

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G  +  +R  P    K    +++ +++ +++       ++   E     M+C  SI++ +
Sbjct: 539 GHQSFIVRSHPTWFPKGQEIEIIDEMMQQVVKLKKVD-IKKLREEAAIMMSCKASIKANQ 597

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 YLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 641


>gi|326389402|ref|ZP_08210969.1| DNA mismatch repair protein MutL [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994407|gb|EGD52832.1| DNA mismatch repair protein MutL [Thermoanaerobacter ethanolicus JW
           200]
          Length = 616

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 198/618 (32%), Positives = 321/618 (51%), Gaps = 31/618 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L EK IN+I+AGE++ERP+  +KELIENS+DA S  +   I  GG  + +++D+G 
Sbjct: 3   KIHLLDEKTINKISAGEVVERPASIVKELIENSIDAGSKNITVEILEGGIPYIKVSDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI    D  +I T GFRGEAL SI AVSH+TL ++      G 
Sbjct: 63  GMNEIDAILAFERHATSKIKSDNDLYSIGTLGFRGEALASIAAVSHVTLQTKEEGALFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K+          G  +EVRD+FF  PAR  FLK    E   ITDV+ ++ +++
Sbjct: 123 KVVVEGGKVIEKTTCGCAKGCSIEVRDVFFNTPARRKFLKRPSTEAMYITDVVTKLCLSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF +   +  ++     S NGN  + I ++ G +  ++ +  + +S ++ L+   G 
Sbjct: 183 PEVSFKYVKDRKLQF---ITSGNGNIEDVILRLFGNEVYSSLMSASFESEDLKLKILAGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            + N  N N  + ++NGR V++K + + I  A+   IP+ RYP V L +EIDPRQ+DVN+
Sbjct: 240 NSLNYSNRNMQFFYVNGRYVKNKTLTAAIDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-SVLSKKMISSFHQDNAPKTHLPKY 358
           HP+K  I+F +   I   + ++I+ +++K  +     +  KK I               Y
Sbjct: 300 HPSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISAEQTKLY 359

Query: 359 ATSLTNTQ-------------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
            TS                  + +FL++N L  N    S D   +   +   E E     
Sbjct: 360 LTSSDKELEEEKKKFDNELKGKNVFLKDNVLKENSKNSSLDNHLAVYEEYEYEYEKEEVN 419

Query: 406 LG---------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                           +   YII +  D   I+DQHAAHER+++EK    +   KI ++ 
Sbjct: 420 KNDLAKKISDIRIVGTLFSTYIIVEKEDVFYIIDQHAAHERILYEKFTSQYE--KIQTRQ 477

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +  P +++L  G+  L+ +  E L++LG   E FG N+I +RE+P IL +    QL  DI
Sbjct: 478 VTFPIVVELQPGDLELVNQEKELLNKLGYAFEEFGNNSIILREVPVILGQPEARQLFIDI 537

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           ++++ D      +  + ENI+  MAC  ++++   +   E+ +L  +++   N   C HG
Sbjct: 538 VEKLKDKELINKISLKEENII-MMACKAAVKAMDNLSEREIYKLFEDLKITENPYTCPHG 596

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP  I +  + +EK+F R
Sbjct: 597 RPVIIAITKTQLEKMFKR 614


>gi|75760973|ref|ZP_00740979.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228902271|ref|ZP_04066431.1| DNA mismatch repair protein mutL [Bacillus thuringiensis IBL 4222]
 gi|74491537|gb|EAO54747.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228857386|gb|EEN01886.1| DNA mismatch repair protein mutL [Bacillus thuringiensis IBL 4222]
          Length = 654

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/655 (28%), Positives = 298/655 (45%), Gaps = 67/655 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T+ GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTITGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---VLSKKMISSFHQDNAPKTHLP 356
           HPAK  +RF     +   I +++Q A  K  +   +      K+   S  +    +   P
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 357 KYATSLT---------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE---------- 397
           K  +              +E L +++             P   E   P            
Sbjct: 359 KEPSMPDIVLPTGMDEKQEEPLPVKQPAQLWQPPKQEWQPPKQEWQPPQSLVREEQSWQP 418

Query: 398 --------------------------------------ESEATHYQLGIACAQIHQNYII 419
                                                 E             Q+H  YI 
Sbjct: 419 STRPIMEEPIREEKSWDSNEEDFELEELEEEVQEIKEIEMNGNDLPPLYPIGQMHGTYIF 478

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q   GL ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+
Sbjct: 479 AQNDKGLYMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEE 538

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L ++G+  E+FG  +  +R  P    K    +++ +++++++       ++   E     
Sbjct: 539 LKKVGLFLEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIM 597

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M+C  SI++ + + + ++  LL E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 MSCKASIKANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 652


>gi|326791329|ref|YP_004309150.1| DNA mismatch repair protein MutL [Clostridium lentocellum DSM 5427]
 gi|326542093|gb|ADZ83952.1| DNA mismatch repair protein MutL [Clostridium lentocellum DSM 5427]
          Length = 663

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/666 (29%), Positives = 326/666 (48%), Gaps = 76/666 (11%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I+ L    IN+IAAGE++ERP   +KEL+ENS+DA++S +   I  GG    ++TDN
Sbjct: 1   MRAIKILDTHTINKIAAGEVVERPCSVVKELVENSIDAKASSITVEIKNGGIDLIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++ +A  RH TSKI  ++D   + + GFRGEAL SI AVS++ L+++  Q  T
Sbjct: 61  GVGIPKDQVEVAFLRHATSKITSAEDLYEVISLGFRGEALASIAAVSNVELLTKEEQELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +I ISG K+S+   VA   GT   +R LFF +PAR  FL S   E   I+D + ++A+
Sbjct: 121 GKRIEISGGKMSAAEEVACPNGTTFIMRHLFFNVPARKAFLSSSSSEGAKISDYMYKLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+VSF +       +     S +      I  + G+++  N +E   KS+ I   G  
Sbjct: 181 AHPEVSFKYIQNGKTIFT---TSGDHELKHAILNIYGKEYARNTLECYYKSDTIECMGLI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  NRGN N  + FINGR ++ + +   +  AY   + +G++P  VL L +DP  VDV
Sbjct: 238 GKPVLNRGNRNYEHFFINGRYIKSQLLQGAVEDAYKTLVMVGKFPFSVLHLYLDPSLVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------SSVLSKKMISS 344
           NVHP K  +RF+NP  I   + + +  A+ +  +                 V+ + +I +
Sbjct: 298 NVHPTKLQVRFKNPDTIYKAVYEGVSHALREAYLVPQVATEPGPKEAKVEPVIEQGIIDT 357

Query: 345 FHQDNAPKTHL-------------------PKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           F      K  +                   P   + L   ++   +    + T +   S 
Sbjct: 358 FFAPRKEKEEVTPQSLLKHNPTDFQREDVNPPSISRLFGNRDSHHVSPQSIDTYEKQLSQ 417

Query: 386 --------DPTYSEDNDPVEESEATHYQLG-----------------------------I 408
                     T    ++ + E E  + + G                              
Sbjct: 418 VFKEEMIHQSTTEPTDEMIHELEKPNKEYGISRFEDVPLPPKIQVEEKPTSPAILPTDYR 477

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q+ + Y + +  + + I+DQHAAHER+++E+   +F + ++ +Q LL PE + +   
Sbjct: 478 IVGQVFKTYWLIEYHEKVFIIDQHAAHERVLYEQFMAEFKANEVATQLLLMPETLMVTPV 537

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E  L+ EH+E   +LG + E FG NA+AIRE+P IL++   P + ++++D +        
Sbjct: 538 EMTLLNEHEELFKKLGFQFEAFGENAVAIREVPFILNEPLSPAVFKEVLDRLT-HDKLQD 596

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           + +     +  M+C  +I++  ++   E  +L+  +    N   C HGRPT + L   DI
Sbjct: 597 IAELKAEAIIRMSCRSAIKAHDQISDRECRKLIELLLALDNPFTCPHGRPTLVALTQVDI 656

Query: 589 EKLFGR 594
           EK+F R
Sbjct: 657 EKMFKR 662


>gi|47092694|ref|ZP_00230480.1| DNA mismatch repair protein MutL [Listeria monocytogenes str. 4b
           H7858]
 gi|47018882|gb|EAL09629.1| DNA mismatch repair protein MutL [Listeria monocytogenes str. 4b
           H7858]
          Length = 602

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 188/601 (31%), Positives = 299/601 (49%), Gaps = 14/601 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLEMETST-GEAKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      +V +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSVPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I Q I++  +K  +     +SKK       +    +       
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKETFHKLQLIPDGEISKKQKEDQKSEQIQMSFEENKPV 360

Query: 361 SLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-----ESEATHYQLGIACAQIH 414
             T T   K  + E   S  D    DD    +     +     +               +
Sbjct: 361 KETPTLFSKPTIPEYVPSDEDAPREDDFILKQCRPMNQNLKRSKKSIRRNVFLKCIQWSN 420

Query: 415 -QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
             N   +Q  +GL I+DQHAA ER+ +E  R+         Q LL P +++    E   +
Sbjct: 421 ACNLYFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVRL 480

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            E    L  +G+  E FG N+  IR  P    K    ++LR+IIDE + +  + ++    
Sbjct: 481 EEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAP-SISIHKLR 539

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E+    M+C  SI++   + + +M  LL  + +  +   C HGRP  I+    ++EK+F 
Sbjct: 540 EDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMFK 599

Query: 594 R 594
           R
Sbjct: 600 R 600


>gi|171778536|ref|ZP_02919663.1| hypothetical protein STRINF_00515 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282759|gb|EDT48183.1| hypothetical protein STRINF_00515 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 646

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 177/634 (27%), Positives = 309/634 (48%), Gaps = 45/634 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+ENS+DA SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGSSQITIEIEESGLKNIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +++ RH TSKI    D   I T GFRGEA+PSI ++SH T+ +     + G 
Sbjct: 63  GISQEDVALSLHRHATSKIKSQADLFRIRTLGFRGEAIPSIASISHFTVKTATADEHYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I     ++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLVAKGGEIERQEAISTPVGTKITVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         +M   S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEIAFTLINDGR---QMTTTSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKEKELMGLISSAIAESLREQDLIPDALENLAKSSTRGFSKPQQTSLPLKQ 359

Query: 357 --------------------KYATSLTNTQEKLFLQENRLST----------------ND 380
                               +    L N  +K   Q ++ S+                +D
Sbjct: 360 TNLYYDKERHDFFVKSDTVEEEPAQLFNEVDKAVKQVDKQSSVRYAQRSLAGQAYDEHDD 419

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
           L   +    +   + +++ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +
Sbjct: 420 LDFKNKTKINRMIESLDKEEVSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQERVKY 479

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E  R        + Q LL P + +    +   I E  E L ++GI  E +G N   +RE 
Sbjct: 480 EYYRDKIGEVDDSLQQLLMPYLFEFSGADFIKIQEKMELLKQVGINLEPYGNNTFILREH 539

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +      +L
Sbjct: 540 PIWMKEEEIETAVYEMCDMLLLTNGV-SVKKYRAELAIMMSCKRSIKANHTLDDYSARQL 598

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 IVQLSQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 632


>gi|110597213|ref|ZP_01385501.1| DNA mismatch repair protein MutL [Chlorobium ferrooxidans DSM
           13031]
 gi|110341049|gb|EAT59517.1| DNA mismatch repair protein MutL [Chlorobium ferrooxidans DSM
           13031]
          Length = 626

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 187/628 (29%), Positives = 314/628 (50%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + I N+I+AGE+++RP+  +KEL+ENS+DA + ++   +   GK   +I DNG 
Sbjct: 3   RIARLPDSIANKISAGEVVQRPASVVKELLENSIDAGADKITLSVKDAGKELIRIVDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  + V+R  TSKI   +D  ++ T GFRGEAL SI +VSH  L +R  +   G 
Sbjct: 63  GMLREDALLCVERFATSKIIGVEDLDSLKTLGFRGEALASISSVSHFELKTRTAKETLGL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G  ++    V    GT + VR+LF+ +PAR  FLKS   E   I +VI+  A+AY
Sbjct: 123 RFRYEGGVLAEESGVQGEQGTTMSVRNLFYNVPARRKFLKSNATEFQHIFEVIKSFALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ +         +            ER++   G DF ++ +EL+E+++ ++++G+ G 
Sbjct: 183 PEIEWRMYNDDEELFHFRTP----EMAERLNFFYGSDFSDSLIELSEENDYLSIRGFLGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +      Y FIN R +Q++ +   ++ AY E +   + P V+L LEIDP ++DVNV
Sbjct: 239 PAMQKRKKLDQYFFINRRVIQNRMLSQAVQQAYGELLVERQAPFVLLFLEIDPSRIDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST--SSVLSKKMISSFHQDNAPK----T 353
           HPAK  +RF +   +RN     I++AI     S   ++        +  Q++A +     
Sbjct: 299 HPAKLEVRFDDERSVRNMFYPVIKRAIQLHDFSPDLAATARDDAFGAPRQESAWRKLSFQ 358

Query: 354 HLPKYATS----LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV------------- 396
            +P  + +      N +E  F       ++ LL S+  T    +                
Sbjct: 359 DIPDRSMTTGDLYRNYREGAFQHAPETRSSTLLQSELFTGRSGSPAPKSQSELREGDDGL 418

Query: 397 ----------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                     +E +    +      Q+H  Y+I Q   GL+I+DQH AHER+++E+    
Sbjct: 419 SFALLSPLPGDEGQPNPKEAEPKIWQLHNKYLICQIKTGLMIIDQHVAHERVLYERAVDV 478

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
                  SQ LL P+ ++    E  +  E  +DL+RLG     FG   I I  +P  +  
Sbjct: 479 MTQNVPNSQQLLFPQKVEFRPWEYEVFEEIRDDLYRLGFNLRLFGNKTIMIEGVPQDVKP 538

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
                +L+++I E  D+++   L D+ +N+  + +C  +I +G+K+   EM  L+  +  
Sbjct: 539 GTEVTILQEMIAEYQDNASRLKL-DKRDNLAKSYSCRNAIMTGQKLNLEEMRTLIDNLFA 597

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   C HGRP  IKL L  ++++FGR
Sbjct: 598 TRDPYSCPHGRPVIIKLSLDQLDRMFGR 625


>gi|172057082|ref|YP_001813542.1| DNA mismatch repair protein MutL [Exiguobacterium sibiricum 255-15]
 gi|229486322|sp|B1YMD8|MUTL_EXIS2 RecName: Full=DNA mismatch repair protein mutL
 gi|171989603|gb|ACB60525.1| DNA mismatch repair protein MutL [Exiguobacterium sibiricum 255-15]
          Length = 607

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 169/607 (27%), Positives = 290/607 (47%), Gaps = 20/607 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LS+ + N+IAAGE++ERP+  +KEL+EN+LDA +++V+  +   G     I DNG G
Sbjct: 4   IRELSDSLANRIAAGEVVERPASVVKELVENALDAGATQVDVELEEAGMKRITIRDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
              E+  +A  RH TSKI D  D   I T GFRGEAL SI +VS +TL ++  +   G Q
Sbjct: 64  FYPEDAELAFVRHATSKIKDEHDLFRIKTLGFRGEALASIASVSKVTLKTKREEQE-GIQ 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +   +++    +AMN GT + V  LFF  PARL +LK+   E   ITD++ R+A A+P
Sbjct: 123 LTLDCGRLTDRSAIAMNRGTELTVEQLFFNTPARLKYLKTTHTELAAITDILNRVAFAHP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V             +   + +G+  + ++ V G   I   +     + +  L  +   P
Sbjct: 183 DVKLYAVHEGK---VLIQTNGSGDVRQALASVYGHQTIQGTLVATGTTADYQLTCHLVKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N   + +NGR+V++  +   +   Y   +P+GR+P+ V+ + +DP  +DVNVH
Sbjct: 240 EVTRASKNYITLILNGRSVKNFALTQAVLNGYHTLLPIGRFPIAVIEVTMDPLLIDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I ++I+  ++++ +       K       Q+    +++ +   
Sbjct: 300 PAKREVRLSKEAELCQLIQETIRLTLSRQTLIPKVTPQKPKKDPSAQEKLEFSYVAEPVE 359

Query: 361 SLTNTQ-------------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
            L++                +     NR+   D           +      +    +   
Sbjct: 360 ELSSRSVWNYPIPKRTEAGNEHVPSANRIQPPDPSIDMPDEPVPEQTDEPVATGPKFPHL 419

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
               Q+H +YI+    DG+ ++DQHAA ER+ +E  +  F       Q LL P   ++  
Sbjct: 420 DVIGQLHSSYIVCSGADGMYLIDQHAAQERIKYETYKVMFGRPLEQKQQLLLPYTFEIAS 479

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +   + E    L  +GI+ E FGP +  +RE+P         + +++++DE +      
Sbjct: 480 DDMRRMDEVLPLLRDVGIELEAFGPQSFIVREVPTWFPSHRQEETIQELMDEAL-MKRKV 538

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L+   E+    MAC  SI++   +    M +L+ ++ K      C HGRP  I+    +
Sbjct: 539 DLETYREDAAIMMACKKSIKANHPLNHEMMRQLIVDLAKTEMPFTCPHGRPVIIEWTTYE 598

Query: 588 IEKLFGR 594
           +EKLF R
Sbjct: 599 LEKLFKR 605


>gi|16078768|ref|NP_389587.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221309580|ref|ZP_03591427.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221313904|ref|ZP_03595709.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221318827|ref|ZP_03600121.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221323099|ref|ZP_03604393.1| DNA mismatch repair protein [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|1709188|sp|P49850|MUTL_BACSU RecName: Full=DNA mismatch repair protein mutL
 gi|1002521|gb|AAB19236.1| MutL [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634077|emb|CAB13578.1| DNA mismatch repair factor [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 627

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 182/628 (28%), Positives = 316/628 (50%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA+S+ +E  I   G +  ++ DNG 
Sbjct: 3   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I S    +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 KLVLQGGNIISESRSSSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L+  S +  ++GY  +
Sbjct: 182 PEVSIRLRHHGK---NLLQTNGNGDVRHVLAAIYGTAVAKKMLPLHVSSLDFEVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------P 351
           HP+K  +R    T + + I   I+    ++ +  S+ + KK   +   +          P
Sbjct: 299 HPSKLEVRLSKETELHDLIRDGIKDVFKQQQLIPSAQVPKKSAPAIKNEQQFITFDEKPP 358

Query: 352 KTHLPKYATSLTNTQEKLFL------------------------QENRLSTNDLLPSDDP 387
           +  +P+ +T+ + +  KL                          QE  L  +D+      
Sbjct: 359 EKKVPEKSTAPSYSPMKLSSVVKEPVDAEEKLPPLQFDAPPIVDQEQTLEVSDVSAEQPE 418

Query: 388 TY-SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
           T+  E ++   +  +    +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+ 
Sbjct: 419 TFEQECHEEQPQPASDRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREK 478

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +   Q ++ P        E  +I +H ++L  +G+  E FG N+  +R  PA   K
Sbjct: 479 VGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPK 538

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               +L+ +II +++DS     ++   E     M+C GSI++ R +++ E+  LL ++  
Sbjct: 539 GEEAELIEEIIQQVLDSKNID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRS 597

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   C HGRP  I     ++EK+F R
Sbjct: 598 TSDPFTCPHGRPIIIHHSTYEMEKMFKR 625


>gi|116513153|ref|YP_812060.1| DNA mismatch repair protein [Lactococcus lactis subsp. cremoris
           SK11]
 gi|123025082|sp|Q02VS5|MUTL_LACLS RecName: Full=DNA mismatch repair protein mutL
 gi|116108807|gb|ABJ73947.1| DNA mismatch repair protein MutL [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 656

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 198/642 (30%), Positives = 326/642 (50%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++TDNG 
Sbjct: 3   KIIELNEALANQIAAGEVVERPASVVKELVENSIDAGSSKITVSVEEAGLRLIEVTDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   Q   G 
Sbjct: 63  GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSNAQEEAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 123 KLIAKGGTIETLEPLAKRLGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        E+N    +  L GY  +
Sbjct: 183 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMREINGSDLDFELTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  VL ++IDP+  DVNV
Sbjct: 240 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAVLSIKIDPKLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+++  +   ++ + +      +  + +T LP   
Sbjct: 300 HPTKQEVRLSKERELMTLISKAIDEALSEGVLIPEALENLQGRVKEKETVSVQTELPLQN 359

Query: 360 TSL--TNTQEKLFLQE------NRLSTNDLLPSDDPTYSEDN------------------ 393
             L   N ++  F++E      N+   +D L   + T    N                  
Sbjct: 360 NPLYYDNVRQDFFVREEAIFEINKNDNSDSLTEQNSTDYTVNQPETGSVSEKITDRTVES 419

Query: 394 --------------------DPVEE-SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                               D +E+ S+ + +      AQ+H  Y++ Q+ +GL +VDQH
Sbjct: 420 SNEFTDRTPKNSVSNFGVDFDNIEKLSQQSTFPQLEYLAQLHATYLLCQSKEGLYLVDQH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  +       +  Q LL P +  L + +  ++ E  + LH  G+  E +G 
Sbjct: 480 AAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLPKNDFIVLAEKKDLLHEAGVFLEEYGE 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +RE P  L +  I + + ++ID I+ SS  ++L+    ++ A +AC  SI++   +
Sbjct: 540 NQFILREHPIWLKETEIEKSINEMIDIIL-SSKEFSLKKYRHDLAAMVACKSSIKANHPL 598

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +     LLRE+    N   C HGRPT +     DI+K+F R
Sbjct: 599 DAESARALLRELATCKNPYSCAHGRPTIVHFSGDDIQKMFRR 640


>gi|300855301|ref|YP_003780285.1| putative DNA mismatch repair protein MutL [Clostridium ljungdahlii
           DSM 13528]
 gi|300435416|gb|ADK15183.1| predicted DNA mismatch repair protein MutL [Clostridium ljungdahlii
           DSM 13528]
          Length = 610

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 200/610 (32%), Positives = 323/610 (52%), Gaps = 22/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   N+IAAGE++E PS  IKEL+ENS+D+ +  +   I  GG+   +I D+G+
Sbjct: 4   RINLLDENTSNKIAAGEVVEGPSSVIKELLENSIDSGAKNITIEIEEGGEKSIKIIDDGW 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKIS  +D   I T GFRGEAL SI +VS+  L S+    + G 
Sbjct: 64  GIHPLDIKKAFMPHATSKISTVEDLDKISTLGFRGEALCSIASVSNTILKSKAEGFDVGN 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I ISG  +   + +  N GT + V DLFF +PAR  FLKS   E   I+D++ R+++A 
Sbjct: 124 EIIISGGVLKETQEIGCNKGTTILVEDLFFNVPARKKFLKSPSREAAGISDIVTRLSLAN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF F        K       G   + I  V G++   N + + + S+ I++ GY G 
Sbjct: 184 PNISFKFFKNGK---KALTTYGTGKVMDVIRCVYGKNIYENIIPVEKHSDIISICGYIGN 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +FIN R V++K I S    A+   + + ++P  +L ++I P  VDVNV
Sbjct: 241 SEISRGSRNNQSIFINKRYVKNKSITSAAEQAFKSFLTINKFPFFILFIDIFPEFVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  ++F +  ++  F+  +I +A+ +  +  S  +  K      +    +    +  
Sbjct: 301 HPAKWEVKFSDSRMVFKFVFDAIHEALRE-SLKDSFTIDLKEDDLKPKKTETEIKEVQIP 359

Query: 360 TSLTNTQEKLFLQENRLS----------TNDLLPSDDPTYSEDNDPV-----EESEATHY 404
             L +  E +++++N  S           N+ +     +++   + V     EE     +
Sbjct: 360 IDLKSPNEGIYIEKNGSSLFKKSKENSNKNEFIKEPKVSFTAKENAVSKNKQEEPRVAKF 419

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
           Q      Q H  YII++ +  L ++DQHAAHE+++FEK ++      + SQ L+TP I++
Sbjct: 420 QPLRIIGQFHSTYIIAEDSSNLYMIDQHAAHEKILFEKYKKSIQKGMVLSQVLITPVIME 479

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   +    +E+ +   + G   E FG N I+IRE+P IL K ++  L  DI+D + +  
Sbjct: 480 LTIKDYNCFIENRDLFKKTGFNVELFGNNTISIREVPMILGKPDMKNLFMDILDNLKNMG 539

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           +  T + +  + LAT+AC  +I++   +  IEMN L+ E+    +   C HGRPT IKL 
Sbjct: 540 SGDTWEVKYLS-LATLACKAAIKANASISEIEMNHLIEELRFIDDPFNCPHGRPTIIKLT 598

Query: 585 LSDIEKLFGR 594
           L+D+EK F R
Sbjct: 599 LNDLEKKFKR 608


>gi|239630090|ref|ZP_04673121.1| DNA mismatch repair protein mutL [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239527702|gb|EEQ66703.1| DNA mismatch repair protein mutL [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 651

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 174/642 (27%), Positives = 309/642 (48%), Gaps = 54/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++ +I+  G    +++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVLISAAGLQEIRVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ + L +    +  G 
Sbjct: 63  GIAPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVKLTTAT-DSGIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G ++ +    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 QIHVKGGEVEAQSTAAHRRGTDVEVNDLFFNTPARLKYMKSQQTELGKIVDIVSRLAMAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PDIAFTVSHDGNMVVR---TAGQGDLRQTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +E+D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVINIEMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------------LSK 339
           HP K+ +R      + + + ++I+  + K+ +   ++                    +S 
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRTRLAKENLIPDALDNLPKRERYDLDQLELTLNKISP 358

Query: 340 KMISSFHQDNAPK-----------THLPKYATSLTNTQ--------EKLFLQENRLSTND 380
           K + S       +           T   +   + T+          + +F +  RL+  D
Sbjct: 359 KTMPSVQPQQGQQLRENTTTNLADTAAEEPTPAPTSPDLEIGDLDDQPIFNEPQRLAAWD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQ--------LGIACAQIHQNYIISQTTDGLVIVDQH 432
                  +        +E E                  AQ+H  Y+++++ DGL I+DQH
Sbjct: 419 QRYQRLASNVVPTLMADEPEPDISHVESAERFPNLTYLAQVHGTYLLAESGDGLYILDQH 478

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  RQ         Q LL P ++D    +   I +H + L  +G+  E FG 
Sbjct: 479 AAQERVNYEYYRQAIGEVSNDQQHLLVPIVLDYSAADAISIRDHRDVLESVGLYLEDFGQ 538

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N+  +   P           +++++D ++      T+    E     M+C  +I++   +
Sbjct: 539 NSFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGR-MTVAAFREKTAIMMSCKRAIKANHHL 597

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DDRQARALLQKLPECENPFNCPHGRPVLVHFSNTDLEKMFKR 639


>gi|288906382|ref|YP_003431604.1| DNA mismatch repair protein mutL [Streptococcus gallolyticus UCN34]
 gi|325979396|ref|YP_004289112.1| DNA mismatch repair protein mutL [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288733108|emb|CBI14689.1| DNA mismatch repair protein mutL [Streptococcus gallolyticus UCN34]
 gi|325179324|emb|CBZ49368.1| DNA mismatch repair protein mutL [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 647

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 175/635 (27%), Positives = 311/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+ENS+DA SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGSSQITIEIEEAGLKKIQVTDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +++ RH TSKI +  D   I T GFRGEA+PSI ++SH T+ +     N G 
Sbjct: 63  GIAQDDVALSLHRHATSKIKNQADLFRIRTLGFRGEAIPSIASISHFTVKTATADENYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLVAKGGEIEKQEPISTPVGTKITVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F+         +M   S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEVAFSLINDGR---QMTTTSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + + I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKEKELMSLISSAIAESLREQDLIPDALENLAKSSTRGLPKPEQTSLPLKQ 359

Query: 360 TSLTNTQEKL-----------------------------------FLQENRLSTNDLLPS 384
           T L   +E+                                    + Q + + + D    
Sbjct: 360 TDLYYDKERRDFFVKSDTVEEQPVQLFNEVDNSVKEVDKQQTSVKYAQRSEVDSQDDEHD 419

Query: 385 -----DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                +    ++  + ++  E++ +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 NLDFKNKTKINKMIESLDNEESSTFPELDYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E  E L+++GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDSSLQQLLMPYLFEFSGADFIKLQEKMELLNQVGIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIETAVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKANHILDDYSARH 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 LLVQLSQCKNPYNCPHGRPVLVNFTKADMEKMFRR 633


>gi|206972646|ref|ZP_03233588.1| DNA mismatch repair protein MutL [Bacillus cereus AH1134]
 gi|206732459|gb|EDZ49639.1| DNA mismatch repair protein MutL [Bacillus cereus AH1134]
          Length = 647

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 186/648 (28%), Positives = 302/648 (46%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL +++ N IAAGE++ERP+  +KEL+ENS+DA S+ +E  +   G S  +I DNG 
Sbjct: 3   KIRKLDDQLSNLIAAGEVVERPASVVKELVENSIDANSTSIEIHLEEAGLSKIRIIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS L L++       G 
Sbjct: 63  GIAEEDCIVAFERHATSKIKDENDLFRIRTLGFRGEALPSIASVSELELITSTGDAP-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I      A   GT + V++LFF  PARL ++K+   E   ITD++ R+A+++
Sbjct: 122 HLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLKYMKTIHTELGNITDIVYRIAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS      +    K+   S NG+  + ++ +         V +  +S + T++GY  +
Sbjct: 182 PEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQVAKKLVPIEAESLDFTIKGYVTL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V++  ++  I+  Y   +P+GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLLPVGRYPIGFLSIEMDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  +RF     +   I +++Q A  K  +   + ++ K                   
Sbjct: 299 HPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAGVTTKKKEKDESVQEQFQFEHAKP 358

Query: 342 ------------------------------ISSFHQDNAPKTHL----PKYATSLTNTQE 367
                                              Q+  P   L      +  S     E
Sbjct: 359 KEPSMPDIVLPTGMDAKQEEPQAVKQPPQLWQPPKQEWQPPQSLIREEQSWQPSTKPIIE 418

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGL 426
           +   +E    +N+     +    E  +  E E             Q+H  YI +Q   GL
Sbjct: 419 EPIQEEKSWDSNEEDFELEELEEEVREIKEIEMNGNDLPPLYPIGQMHGTYIFAQNDKGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ER+ +E  R          Q LL P  IDL   E   + E  E+L ++G+ 
Sbjct: 479 YMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRIDLSLTEFLRVEEQLEELKKVGLF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E+FG  +  +R  P    K    +++ +++++++       ++   E     M+C  SI
Sbjct: 539 LEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKLKKVD-IKKLREEAAIMMSCKASI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ + + + ++  L+ E+    N   C HGRP  +     ++EK+F R
Sbjct: 598 KANQYLTNDQIFALMEELRTTTNPYTCPHGRPILVHHSTYELEKMFKR 645


>gi|296284037|ref|ZP_06862035.1| DNA mismatch repair protein [Citromicrobium bathyomarinum JL354]
          Length = 590

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 227/591 (38%), Positives = 346/591 (58%), Gaps = 19/591 (3%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           IERP+ A+KEL+EN++D+ ++R+   +  GG    ++ D+G GM+ EE+ +A++RH TSK
Sbjct: 2   IERPAAALKELVENAIDSGATRITVSLEDGGIGAIEVVDDGCGMSPEEMALALERHATSK 61

Query: 80  ISDD-------FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
           + +D          + T GFRGEALPSI +V+  TL SRP   ++G +  +   ++   +
Sbjct: 62  LPEDLVGEGHALEQVATLGFRGEALPSIASVARFTLESRPHNADSGWRRVVDHGRVVEDK 121

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
           P A+ PGT   + D F  +PAR  FL++ + E     D++RR+A+A P + FTFS     
Sbjct: 122 PSAVPPGTRARIEDFFREVPARRKFLRTPRSEFAACQDIVRRLAMARPDIGFTFSNNGRR 181

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             ++         PER+ +++  D  +N V ++    E+TL G  G+PT+NRG A+  Y+
Sbjct: 182 SLQLQRGEA---LPERVVRLVSRDLKDNCVPIDLARGEMTLTGIAGLPTYNRGVADHQYL 238

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
           F+NGR V+D+ ++  +R AYAE +   R+ V+ L L++ P  VDVNVHPAKS +RFR+P 
Sbjct: 239 FVNGRPVKDRLLVGAVRGAYAEMLARDRHAVLALFLDLPPEDVDVNVHPAKSEVRFRDPQ 298

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKTHLPKYATSLT-NTQEKLF 370
            +R  I+  ++ A++     ++       ++ +  +  AP+             +     
Sbjct: 299 GVRGMIVGGLRAALSTGDKRSAQAPDASAMAKWQAEPVAPEPPAASIFDRFAGGSASATA 358

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           LQE R+       +D P      +      EA  Y LGIA  QI   YI+++  DGLV+V
Sbjct: 359 LQEPRMDWRAQQAADAPPSGRAEEAAPLPQEARDYPLGIARGQIANTYIVAEAADGLVLV 418

Query: 430 DQHAAHERLIFEKMRQ-DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           DQHAAHERL  E++R  D  S    SQ LL PE+++L E EC  +     DL R+G+  E
Sbjct: 419 DQHAAHERLTLERLRSADAGSATARSQALLMPEVVELSEAECDRLEGIAADLDRMGLAIE 478

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS-----STTYTLQDRIENILATMACY 543
           RFGP A+ +R +P  L K +   LLRDI D++  +       +  L ++IE +LATMAC+
Sbjct: 479 RFGPAAMLVRSLPHALPKADPHALLRDIADDLATNGVDGEGGSLLLTEKIEYVLATMACH 538

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           GS+R+GR ++  EMN LLREME+ P S QCNHGRPT++KL + ++EKLFGR
Sbjct: 539 GSVRAGRTLRVEEMNALLREMERTPRSGQCNHGRPTWVKLSMEEVEKLFGR 589


>gi|306832429|ref|ZP_07465582.1| DNA mismatch repair protein HexB [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425469|gb|EFM28588.1| DNA mismatch repair protein HexB [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 647

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 175/635 (27%), Positives = 311/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+ENS+DA SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGSSQITIEIEEAGLKKIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +++ RH TSKI +  D   I T GFRGEA+PSI ++SH T+ +     N G 
Sbjct: 63  GIAQDDVALSLHRHATSKIKNQADLFRIRTLGFRGEAIPSIASISHFTVKTATADENYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLVAKGGEIEKQEPISTPVGTKITVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F+         +M   S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEVAFSLINDGR---QMTTTSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + + I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKEKELMSLISSAIAESLREQDLIPDALENLAKSSTRGLPKPEQTSLPLKQ 359

Query: 360 TSLTNTQEKL-----------------------------------FLQENRLSTNDLLPS 384
           T L   +E+                                    + Q + + + D    
Sbjct: 360 TDLYYDKERRDFFVKSDTVEEQPVQLFNEVDNSVKEVDKQQTSVKYAQRSEVDSQDDEHD 419

Query: 385 -----DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                +    ++  + ++  E++ +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 NLDFKNKTKINKMIESLDNEESSTFPELDYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E  E L+++GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDSSLQQLLMPYLFEFSGADFIKLQEKMELLNQVGIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIETAVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKANHILDDYSARH 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 LLVQLSQCKNPYNCPHGRPVLVNFTKADMEKMFRR 633


>gi|81427977|ref|YP_394976.1| DNA mismatch repair protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78609618|emb|CAI54664.1| DNA mismatch repair protein MutL [Lactobacillus sakei subsp. sakei
           23K]
          Length = 653

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 177/644 (27%), Positives = 296/644 (45%), Gaps = 56/644 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA S++V+ V+   G    Q+ DNG 
Sbjct: 4   KIHELSEILSNQIAAGEVIERPASVVKELVENAIDANSTQVDIVVEQAGLQMIQVIDNGD 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A +RH TSKI+   D   I + GFRGEAL SI +VS LT+ +    +  G 
Sbjct: 64  GIEPEDVPVAFKRHATSKIATRQDLFKIQSLGFRGEALASIASVSDLTIETATADS-LGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                G  +   +   + PGT + VRDLFF  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 FAHFKGGLLEEQKTNPIRPGTAITVRDLFFNTPARLKYVKTFQTELANIVDIVNRLAMSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT +        +   + N +  + I+ + G       + ++    +  L GY  +
Sbjct: 183 PQIAFTLTNDGHL---LLKTAGNNDLKQTIAGIYGVTMAKKLLAVSASDLDFKLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + INGR +++  +   I   Y   + +GRYP+ VL +E+DP  +DVNV
Sbjct: 240 PELTRATRNYLSILINGRFIKNYQLNKAIIKGYGSKLMVGRYPIAVLAIEMDPLLIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HP K  +R    T +   I  +I++ +  + +   +                        
Sbjct: 300 HPTKQEVRLSKETALMTLIEGAIKERLATENLIPDAMQNLKRTKTVDVDQLQMNLNQITQ 359

Query: 336 ---------------VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
                           +  K ++    +       P         +  LF Q   L+  D
Sbjct: 360 ERRHPSGTVRPVSPMPIPVKTVTPEIAETETPLAAPTAKAPAITPERPLFEQPQALAEWD 419

Query: 381 LLPSDDPTYSEDNDPVEE----------SEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
              + +       D V +               +       Q+H  +++++  DG  I+D
Sbjct: 420 QKYATEAVGKPFGDQVVDETDESEENVVEPTVRFPELRYIGQLHSTFLLAEGEDGFYILD 479

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAA ER+ +E  R+       + Q LL P +++    +   I E  E L  +GI+ E F
Sbjct: 480 QHAAQERIKYEYYREKIGEVSTSVQNLLVPLVLEYPNSDALKIQEKTELLASVGIQLENF 539

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G N+  +   P  + +      +R +ID+++      ++    E     M+C  SI++  
Sbjct: 540 GQNSFVVHSHPTWIGQGQEEMTIRGMIDDVLKDGRI-SIAQFREKTAIMMSCKQSIKAHH 598

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   +   LL ++ K  N   C HGRP  I     D+EK+F R
Sbjct: 599 HLDDAQAKALLADLAKTENPFNCPHGRPVLIHYTQKDLEKMFKR 642


>gi|291519453|emb|CBK74674.1| DNA mismatch repair protein MutL [Butyrivibrio fibrisolvens 16/4]
          Length = 632

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 177/632 (28%), Positives = 296/632 (46%), Gaps = 43/632 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS++ I++IAAGE++ERP+   KELIENS+DA ++ +   I GGG  + +ITDNG 
Sbjct: 3   KINLLSQETIDKIAAGEVVERPASVAKELIENSIDAGATAISVEIKGGGIEYLRITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKIS   D  N+ + GFRGEAL SI AVS + L+++   +  GA
Sbjct: 63  GIDKDQIQIAFLRHSTSKISSAVDLDNVRSLGFRGEALSSISAVSKVELITKTKDSLLGA 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G K  S+  V    GT   VR LF+  PAR  FLKSE  E + + DV+  +A+++
Sbjct: 123 SYIIEGAKEISLTDVGAPDGTTFIVRQLFYNTPARKKFLKSESTEGSYVFDVVEHLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F      +      S NG   + I Q+ G    +N +++     ++++ G+ G 
Sbjct: 183 PEISFKFLVNGKEKLM---TSGNGTLSDTIYQIYGRQIASNVLDIEYVDEKVSITGFIGQ 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               RGN    + F+N R ++   +       Y   +   +YP  V+ +      VDVNV
Sbjct: 240 SVIARGNRAFEHFFVNSRYIKSNNLSRACEEGYYGFLMGHQYPFFVINIAFTDSAVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-----------KKGISTSSVLSKKMIS--SFH 346
           HP K  +RF N + +   + ++I + +            +  I  + ++ +  +S     
Sbjct: 300 HPTKQEVRFENESEVCQLLTKTINQRLRRREDVLETHIDEPTIKQAPIIQQPTVSTVPVE 359

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS------DDPTYSEDNDPVEESE 400
            +  P+T+       ++ T  ++   +   +                T    ND   E +
Sbjct: 360 AEVKPETNYQSIPAQVSATSSEVIPPKPVKTPEPFEKDRLERIKQSITAQIHNDTPYEKK 419

Query: 401 ATHYQLG------------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                 G                      Q+   Y I +    + I+DQHAAHE+++FEK
Sbjct: 420 FAEKNRGGEKYEQISFLNKEAVKEHKIIGQVFDTYWIVEYDKNMYIIDQHAAHEKVLFEK 479

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
                 + ++TSQ +  P I+ L   +  L   + E   +LG + E FG N +AI  IP 
Sbjct: 480 TMARLKNNQMTSQMISPPVIVSLSPQDVLLFENYREAFEKLGYRVESFGGNELAINGIPG 539

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            L   +      +++ +      + +    IE + A+M+C  +++   ++   E+  L+ 
Sbjct: 540 NLLNLDPKAFFLEVLADCQSYKASDSFDMIIERV-ASMSCKAAVKGNNRLSIPEIKTLID 598

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ +  N   C HGRPT I     ++ K F R
Sbjct: 599 DLLELENPYHCPHGRPTMISFSEYELGKKFKR 630


>gi|228476690|ref|ZP_04061359.1| DNA mismatch repair protein MutL [Streptococcus salivarius SK126]
 gi|228251639|gb|EEK10736.1| DNA mismatch repair protein MutL [Streptococcus salivarius SK126]
          Length = 647

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 177/635 (27%), Positives = 306/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++S+LT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISYLTIVTAAAGEAYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G KI S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKGGKIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQISGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKEKELMALISSAIAQSLREQDLIPDALENLAKSSTRGATKPVQTSLPLKQ 359

Query: 360 TSL-----------------------------------TNTQEKLFLQENRLSTNDLLPS 384
           T+L                                      Q  +   +  +   D    
Sbjct: 360 TNLYYDSSRNDFFVKPETVQEDIKPLISESESPVSSVENKPQPSVKQAQRSVDEGDSEHE 419

Query: 385 -----DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                +        + ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 KLDYKNKSKMKRMLETLDNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E    L+++GI  E +G N   +RE
Sbjct: 480 YEYYREKIGEVDSSLQQLLVPYLFEFSGSDYISLQEKMSLLNQVGIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLVQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|255525227|ref|ZP_05392169.1| DNA mismatch repair protein MutL [Clostridium carboxidivorans P7]
 gi|296188727|ref|ZP_06857114.1| DNA mismatch repair protein [Clostridium carboxidivorans P7]
 gi|255511090|gb|EET87388.1| DNA mismatch repair protein MutL [Clostridium carboxidivorans P7]
 gi|296046654|gb|EFG86101.1| DNA mismatch repair protein [Clostridium carboxidivorans P7]
          Length = 633

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 192/634 (30%), Positives = 323/634 (50%), Gaps = 46/634 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  L  +  N+IAAGE++ERP   +KEL+ENS+D+ +  +      GG+   ++ D+G 
Sbjct: 3   RVNVLDLETSNKIAAGEVVERPFSVVKELVENSIDSGAKNITVETIDGGQKSIKVLDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +++I      H TSKI   +D  +I+T GFRGEAL SI +VS+  L SR  + + G 
Sbjct: 63  GIHADDIEKVFMPHATSKIKNIEDVYSINTMGFRGEALASIASVSNTVLRSRAEEFDFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I+ISG  I+ ++  A N GT +EV DLFF +PAR  FLKS   E+  ITD++ R+++A+
Sbjct: 123 EISISGGNINYIKDAACNLGTTIEVNDLFFNVPARKKFLKSSSRESAYITDILNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             VSF          K+      GN  + I  V G+   +N +     ++ +++ GY G 
Sbjct: 183 SDVSFKLINNGK---KVLTTYGTGNLLDAIRCVYGKTICDNVLTFERHTDIMSIYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R +++K I + +  A+   + + +YP  VL L+I P  +DVNV
Sbjct: 240 SEISRGSRNNESIFVNKRYIKNKLITAAVENAFKSFLMINKYPFFVLFLDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS---------------- 343
           HP KS I+FR+   I   I  ++  A+      + ++  +++ +                
Sbjct: 300 HPTKSEIKFRDDREIFKIIFDTVHAALRDSIKDSFNIPVEEINNDLPDIGDKNKGEDSLT 359

Query: 344 ------------------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENR-----LSTND 380
                               +         PK A   +  + ++    ++        N+
Sbjct: 360 KDGLGKIENKKDLIQLPIDLNSKWQHNYESPKPAQDKSYIKNQIQEYNSKDFQLCKENNE 419

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
           LL  D    +E+++   E EA  +       Q H  YI++Q  D L ++DQHAAHE+++F
Sbjct: 420 LLKIDSNCKNENDEKNIEMEA-KFPKLNVIGQFHNTYILAQYGDTLYLIDQHAAHEKILF 478

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           EK +       + +Q L+TP II+L   +     ++ E   + G   E FG N I+IRE+
Sbjct: 479 EKYKNSIKENDVIAQILITPVIIELYHEDFLYYTDNKEIFSKAGFNIEIFGDNTISIREV 538

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P IL K ++  L  DI++ + +  +  T   +   I A +AC  +I++   + +IEM+ L
Sbjct: 539 PLILGKPDVKNLFMDILENLKNMGSGETWTIKYNAI-AKLACKAAIKANDNLSNIEMDAL 597

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + ++    +   C HGRPT IK  L+++EK F R
Sbjct: 598 VEDLRFIEDPFNCPHGRPTIIKFTLNELEKKFKR 631


>gi|261406194|ref|YP_003242435.1| DNA mismatch repair protein MutL [Paenibacillus sp. Y412MC10]
 gi|261282657|gb|ACX64628.1| DNA mismatch repair protein MutL [Paenibacillus sp. Y412MC10]
          Length = 660

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 174/659 (26%), Positives = 292/659 (44%), Gaps = 71/659 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E I NQIAAGE++ERP+  +KEL+EN++DA S++++  +  GG    ++TDNG G
Sbjct: 4   IRILDEHIANQIAAGEVVERPASVVKELVENAIDAGSTKIDVSVEEGGLDSIRVTDNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+   A  RH TSKI++  D   I + GFRGEALPSI AVS + L++   Q+  G +
Sbjct: 64  IDPEDCETAFYRHATSKIAEGRDLFQITSLGFRGEALPSIAAVSKVRLVTSNAQDGRGRK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  +      A   GT   V++LF+  PARL ++K+ Q E   I+D + R+A++ P
Sbjct: 124 IEIEGGHLRVNEETAAPRGTDFLVKELFYNTPARLKYMKTIQTELGHISDYMYRLALSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT     +    +     NG+  + I+ V G       +    ++ + TL GY   P
Sbjct: 184 DIAFTLRHNGN---SLLQTLGNGDALQVIAAVYGTQSAKAMLPFAAENMDYTLSGYISRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + R N N   + INGR +++  ++  I   Y   +P+ R+P+VV+ L + P  +DVNVH
Sbjct: 241 DYTRANRNGMSLIINGRYIRNYGLMQAILRGYHTLLPINRFPLVVIQLSMHPSLIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---------SSVLSKKMISSFHQ---D 348
           P+K  +RF     +  F+ + ++K + ++ +           S+    +   SF Q   D
Sbjct: 301 PSKLEVRFSKEQELFAFVEEEVRKVLQQEILIPRPAKQNIGKSNNAYIQEQLSFPQAQGD 360

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV------------ 396
                        +  + E+       L T      D  T +   + +            
Sbjct: 361 VGAARGGQDRDLEIPGSDERSAGGNTPLPTPPAAWPDKQTLATSPNCIKRSYGDGTAETA 420

Query: 397 -----------------------------------------EESEATHYQLGIACAQIHQ 415
                                                       E   +       Q H 
Sbjct: 421 AASQMRETAASSSYRSDYRNEARGGAGIPAVTKEWLQAVSGPAPEIPPFPELTLIGQHHG 480

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y+I+Q   GL ++DQHAAHER+ +E   + F +    SQ LL P  ++    E   + +
Sbjct: 481 TYLIAQNDTGLYLIDQHAAHERINYEYYYEQFGNPADASQELLLPITLEFTPSESEKVKD 540

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
                 ++G+  E FG +   +R  P    K     ++ ++ + +++      +    E 
Sbjct: 541 RLHWFEKVGVYMEFFGGHTFLVRSHPFWFPKGEEKAIIEEMAEWVLNERNID-IAKLRET 599

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                +C  SI++ +K+   E   L++ +        C HGRP  +     D+EK+F R
Sbjct: 600 SSIMCSCKASIKANQKLTEQEAMTLIQRLGACRQPYTCPHGRPIVVSFSAYDLEKMFKR 658


>gi|306834545|ref|ZP_07467658.1| DNA mismatch repair protein HexB [Streptococcus bovis ATCC 700338]
 gi|304423347|gb|EFM26500.1| DNA mismatch repair protein HexB [Streptococcus bovis ATCC 700338]
          Length = 647

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 175/635 (27%), Positives = 310/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+ENS+DA SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGSSQITIEIEEAGLKKIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +++ RH TSKI +  D   I T GFRGEA+PSI ++SH T+ +     N G 
Sbjct: 63  GIAQDDVALSLHRHATSKIKNQADLFRIRTLGFRGEAIPSIASISHFTVKTATADENYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLVAKGGEIEKQEPISTPVGTKITVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F+         +M   S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEVAFSLINDGR---QMTTTSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + + I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKEKELMSLISSAIAESLREQDLIPDALENLAKSSTRGLPKPEQTSLPLKQ 359

Query: 360 TSLTNTQEKL-----------------------------------FLQENRLSTNDLLPS 384
           T L   +E+                                    + Q + +   D    
Sbjct: 360 TDLYYDKERRDFFVKSDTVEEQPVQLFNEVDNSVKEVDKQQTSVKYAQRSEVDNQDDEHD 419

Query: 385 -----DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                +    ++  + ++  E++ +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 NLDFKNKTKINKMIESLDNEESSTFPELDYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E  E L+++GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDSSLQQLLMPYLFEFSGADFIKLQEKMELLNQVGIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIETAVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKANHILDDYSARH 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 LLVQLSQCKNPYNCPHGRPVLVNFTKADMEKMFRR 633


>gi|116495687|ref|YP_807421.1| DNA mismatch repair protein [Lactobacillus casei ATCC 334]
 gi|301067237|ref|YP_003789260.1| DNA mismatch repair protein [Lactobacillus casei str. Zhang]
 gi|122262911|sp|Q035Z3|MUTL_LACC3 RecName: Full=DNA mismatch repair protein mutL
 gi|116105837|gb|ABJ70979.1| DNA mismatch repair protein MutL [Lactobacillus casei ATCC 334]
 gi|300439644|gb|ADK19410.1| DNA mismatch repair enzyme (predicted ATPase) [Lactobacillus casei
           str. Zhang]
          Length = 651

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 174/642 (27%), Positives = 309/642 (48%), Gaps = 54/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++ +I+  G    +++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVLISAAGLQEIRVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ + L +    +  G 
Sbjct: 63  GIAPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVKLTTAT-DSGIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G ++ +    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 QIHVKGGEVEAQSTAAHRRGTDVEVNDLFFNTPARLKYMKSQQTELGKIVDIVSRLAMAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PDIAFTVSHDGNMVVR---TAGQGDLRQTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +E+D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVINIEMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------------LSK 339
           HP K+ +R      + + + ++I+  + K+ +   ++                    +S 
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRTRLAKENLIPDALDNLPKRERYDLDQLELTLNKISP 358

Query: 340 KMISSFHQDNAPK-----------THLPKYATSLTNTQ--------EKLFLQENRLSTND 380
           K + S       +           T   +   + T+          + +F +  RL+  D
Sbjct: 359 KTMPSVQPQQGQQLRENTTTNLADTAAEEPTPAPTSPDLEIGDLDDQPIFNEPQRLAAWD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQ--------LGIACAQIHQNYIISQTTDGLVIVDQH 432
                  +        +E E                  AQ+H  Y+++++ DGL I+DQH
Sbjct: 419 QRYQRLASNVVPTLVADEPEPDISHVESAERFPNLTYLAQVHGTYLLAESGDGLYILDQH 478

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  RQ         Q LL P ++D    +   I +H + L  +G+  E FG 
Sbjct: 479 AAQERVNYEYYRQAIGEVSNDQQHLLVPIVLDYSAADAISIRDHRDVLESVGLYLEDFGQ 538

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N+  +   P           +++++D ++      T+    E     M+C  +I++   +
Sbjct: 539 NSFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGR-MTVAAFREKTAIMMSCKRAIKANHHL 597

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DDRQARALLQKLPECENPFNCPHGRPVLVHFSNTDLEKMFKR 639


>gi|289578352|ref|YP_003476979.1| DNA mismatch repair protein MutL [Thermoanaerobacter italicus Ab9]
 gi|289528065|gb|ADD02417.1| DNA mismatch repair protein MutL [Thermoanaerobacter italicus Ab9]
          Length = 616

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 189/617 (30%), Positives = 320/617 (51%), Gaps = 30/617 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L EK IN+I+AGE++ERP+  +KELIENS+DA S  +   I  GG  + +++D+G 
Sbjct: 4   KIRLLDEKTINKISAGEVVERPASIVKELIENSIDAGSKNITVEILEGGIPYIKVSDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI    D  NI T GFRGEAL SI A+SH+TL ++      G 
Sbjct: 64  GMNEIDAILAFERHATSKIKSDNDLYNIGTLGFRGEALASIAAISHVTLQTKEEGALFGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K+          G  VEVRD+FF  PAR  FLK    E   ITD + ++ +++
Sbjct: 124 KVVVEGGKVIEKTNCGCAKGCSVEVRDVFFNTPARRKFLKKPSTEAMYITDTVTKLCLSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF +   K  ++     S  G+  + I ++ G +  ++ + ++ ++ ++ L+   G 
Sbjct: 184 PEVSFKYVKDKKLQF---ITSGKGDVEDVILRLFGNEVYSSLMSVSFQTEDLKLKILAGK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            + N  N N  + ++NGR V+++ + + I  A+   IP+ RYP V L +EIDPRQ+DVN+
Sbjct: 241 NSLNYSNRNMQFFYVNGRYVKNRTLSAAIDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAP 351
           HP+K  I+F +   +   + ++I+ +++K  +     + +K           S  Q    
Sbjct: 301 HPSKLEIKFSDERRVFETVYKTIKDSLHKYNLIPEVKIEEKKNIFKIETPTISAEQTKLY 360

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG---- 407
            T   K         +  F  +N    +++L  +    S DN      E    +      
Sbjct: 361 LTSSDKELEEEKKKLDNEFRGKNVFLKDNVLKENSKNSSLDNHLAVYEEYEDEKEEVNKK 420

Query: 408 ----------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                          +   YII +  D   I+DQHAAHER+++EK    +   KI ++ +
Sbjct: 421 NDITKKISDIRIVGTLFSTYIIVEKEDVFYIIDQHAAHERILYEKFTSQYE--KIQTKQV 478

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
             P +++L  G+  L+ +  + L++LG   E FG N+I +RE+P IL +    QL  +I+
Sbjct: 479 TFPIVVELQPGDLELVQQEKKLLNKLGYTFEEFGNNSIILREVPVILGQPEARQLFIEIV 538

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           +++ D      +  + E+I+  MAC  ++++   +   E+ +L  +++   N   C HGR
Sbjct: 539 EKLRDKELINKISLKEESII-MMACKAAVKAMDNLSEREIYKLFEDLKITENPYTCPHGR 597

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I +  + +EK+F R
Sbjct: 598 PVIIAITKTQLEKMFKR 614


>gi|327467944|gb|EGF13434.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK330]
          Length = 647

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 187/635 (29%), Positives = 304/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 63  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLVAQGGEIEEHEPASSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + + I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 300 HPTKQEVRISKERELMDLISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 359

Query: 360 TSLTNTQE------KLFLQENRLSTN---------------------------------- 379
             L   +E      K  + E +LS                                    
Sbjct: 360 NRLYYDKEQNDFFLKPQVAEQQLSFEETAGLVHEATDEKVEPQPTSVKFAERKLASYDQL 419

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 540 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|320547649|ref|ZP_08041934.1| DNA mismatch repair protein HexB [Streptococcus equinus ATCC 9812]
 gi|320447724|gb|EFW88482.1| DNA mismatch repair protein HexB [Streptococcus equinus ATCC 9812]
          Length = 647

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 177/635 (27%), Positives = 310/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+ENS+DA SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGSSQITIEIEESGLKKIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +++ RH TSKI    D   I T GFRGEA+PSI ++SH T+ +     N G 
Sbjct: 63  GIAQEDVALSLHRHATSKIKSQADLFRIRTLGFRGEAIPSIASISHFTVKTATADENYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLIAKGGEIEKQEPISTPVGTKITVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         +M   S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEIAFTLINDGR---QMTTTSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++  + +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKEKELMTLISSAIAESLRAQDLIPDALENLAESSTRGMPKPEQTSLPLKQ 359

Query: 360 TSLTNTQEK--LFLQENRLSTN-------------------------------------- 379
           ++L   +E+   F++ + +                                         
Sbjct: 360 SNLYYDKERHDFFVKSDTVEEQPVQLYNEVDTPVKEVDKQSSVKYAQRSTQGNLADGEHD 419

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           DL   +    ++  + ++  E++ +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DLDFKNKSKINKLLENLDGEESSTFPELDYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R        + Q LL P + +    +   + E  E L+++GI  E +G N   +RE
Sbjct: 480 YEYYRDKIGDVDASLQQLLMPYLFEFSGADFIKLQEKMELLNQVGINLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +      +
Sbjct: 540 HPIWMKEEEIESAVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKANHTLDDYSARQ 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLVQLSQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|20455140|sp|Q9CDL1|MUTL_LACLA RecName: Full=DNA mismatch repair protein mutL
          Length = 656

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/642 (28%), Positives = 320/642 (49%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++ DNG 
Sbjct: 3   KIIELNEALANQIAAGEVVERPASVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   +  +G 
Sbjct: 63  GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSTAEEESGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 123 KLVAKGGNIETLEPLAKRVGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        ++     +  L GY  +
Sbjct: 183 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMRQIKGSDLDFELTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  +L ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAILSIKIDPTLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+++  +   ++ + +  +   +  + +T LP   
Sbjct: 300 HPTKQEVRLSKERELMALISKAIDEALSEGVLIPEALENLQGRAKEKESLSVQTELPLQN 359

Query: 360 TSL--TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE------------------- 398
             L   N ++  +++E      +   + + +  +  D   E                   
Sbjct: 360 NPLYYDNVRQDFYVREEATFKINKNQASNDSSEQTFDNFTENQLNTDAVSEKMTDRTVES 419

Query: 399 --------------------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                                     S+++ +      AQ+H  Y++ Q+ +GL +VDQH
Sbjct: 420 TTEITDNSLENTVSNFEIDFDNEAKISQSSTFPQLEYLAQLHATYLLCQSKEGLYLVDQH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  +       +  Q LL P +  L + +  ++ E  + LH  G+  E +G 
Sbjct: 480 AAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLAKNDFIVLAEKKDLLHEAGVFLEEYGE 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +RE P  L +  I + + ++ID I+ SS  ++L+    ++ A +AC  SI++   +
Sbjct: 540 NQFILREHPIWLKETEIEKSINEMIDIIL-SSKEFSLKKYRHDLAAMVACKSSIKANHPL 598

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +     LL E+    N   C HGRPT +     DI+K+F R
Sbjct: 599 DAESARALLAELATCKNPYSCAHGRPTIVHFSGDDIQKMFRR 640


>gi|329736310|gb|EGG72582.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus epidermidis VCU028]
          Length = 645

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 171/646 (26%), Positives = 311/646 (48%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGVSSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     KI   +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGKIIHQKPAKAKKGTDIQVDSLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++  +  +      K+   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PEIRISLVSDGK---KLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDNAPKTH 354
           HP K  +R      + + I+  I++A   K +   + L+      K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNHAPKKNKVLETFEQQKINFEK 358

Query: 355 LPKY---------------------------ATSLTNTQEKLFLQE-------------- 373
                                          +TSLTN +      E              
Sbjct: 359 QQSQIGETSAPYVHDQKDKNHDVESHKNNLDSTSLTNNESTEVSNELHNYIDDSYLQSQK 418

Query: 374 -----NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                   +T++     +   ++    V ++            Q+H  YII+Q  +G+ +
Sbjct: 419 EVLFDMEQNTSNEYEISNQQSNDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 479 IDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K+   ++++D+I+ ++    +  ++   E+    M+C  SI++
Sbjct: 539 HFGGHDYIVNSYPVWFPKEEAEEIIKDMIELVLKH-KSVDVKKIREDAAIMMSCKKSIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 NHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 643


>gi|328957013|ref|YP_004374399.1| DNA mismatch repair protein MutL [Carnobacterium sp. 17-4]
 gi|328673337|gb|AEB29383.1| DNA mismatch repair protein MutL [Carnobacterium sp. 17-4]
          Length = 663

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 190/658 (28%), Positives = 317/658 (48%), Gaps = 70/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS+ + NQIAAGE+IERP+  +KELIEN++DAESS+++ +I   G    QI DNG 
Sbjct: 6   KIQELSDVLANQIAAGEVIERPASVVKELIENAIDAESSQIDILIEEAGLKKIQIIDNGL 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +       G 
Sbjct: 66  GIEPEEVQNAFKRHATSKIYSRDDLFRIRTLGFRGEALPSIASVSEVTLET-SIGGERGT 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G KI   R      G+ + + +LFF  PARL ++KS Q E + +TD++ RMAI++
Sbjct: 125 YLSLKGGKIIEERANEARKGSKITIENLFFNTPARLKYVKSLQTELSNVTDIVNRMAISH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   ++   + NG+  + ++ + G        E+ ++  +  + G+  +
Sbjct: 185 PNIAFRLVHDGN---QLLRTAGNGDLKQTLAGIYGVATAKKMREIKKEDLDFRVSGFISL 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + INGR +++  +   I + Y   + +GRYPV  + +++DP  VDVNV
Sbjct: 242 PELTRASRNYISIIINGRYIKNYLLNKAIISGYRSKLMVGRYPVAAIEIDMDPLLVDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--------------VLSKKMISSF 345
           HP K  +R      +   I  +I ++++K+ +   +              V +++    F
Sbjct: 302 HPTKQEVRISKEKELMQLIESAIHESLSKEQLIPDALENLSFKKKTDLPMVETEQTTFQF 361

Query: 346 HQDNAPK-------THLPKYATSLT---------------------------NTQEKLFL 371
           HQ+  P+            Y++S +                           NTQE  F 
Sbjct: 362 HQERNPEVKNENNKESENNYSSSTSYNAHHQSRSFEKDSVDEEEKDSFFLKENTQETPFG 421

Query: 372 QENRLS---------------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
              + S                +   P    +   +   +       +       Q+H  
Sbjct: 422 YAPQESHIGEVPNKLVSELVDYHQESPLKTASKLMEKKKIPTESVDQFPTLEYVGQMHGT 481

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y+ +Q   GL I+DQHAA ER+ +E  R+         Q LL P ++D    +   I E+
Sbjct: 482 YLFAQNDKGLYILDQHAAQERIKYEYFRKKIGEVSNDLQDLLVPIMLDYPNSDAIKIKEN 541

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
           ++ L  +GI  E FG N+  +R  P   ++     ++R++ID +++   + ++    E  
Sbjct: 542 NDALETVGIFLEPFGQNSFLLRSHPVWFNQGEEESIVREMIDLLLEQG-SISVAKFREAT 600

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              M+C GSI++   +   E   LL++++K  N   C HGRP  I     D+EK+F R
Sbjct: 601 AIMMSCKGSIKANHYLNDAEARALLKDLKKTENPYNCPHGRPVLIHFTNKDMEKMFKR 658


>gi|224476433|ref|YP_002634039.1| DNA mismatch repair protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254766175|sp|B9DPC0|MUTL_STACT RecName: Full=DNA mismatch repair protein mutL
 gi|222421040|emb|CAL27854.1| putative DNA mismatch repair protein MutL [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 646

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 173/646 (26%), Positives = 301/646 (46%), Gaps = 59/646 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L   + N+IAAGE++ERP   +KEL+EN+LDA+++ +   I   G    ++ DNG G
Sbjct: 4   IKELQTSLANKIAAGEVVERPGSVVKELLENALDAKATEINIEIKQSGIESIRVVDNGTG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +   RH TSK+ +  D  +I T GFRGEAL SI +V+ +TL +      +G +
Sbjct: 64  IEEDDLKLVFHRHATSKLHEDSDLFHIRTLGFRGEALASISSVAKVTLRTCTDGQ-SGHE 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I      I   +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++P
Sbjct: 123 IYAEDGAILEQKPAKAKKGTDILVESLFYNTPARLKYVKSLYTELGKITDIVNRMAMSHP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V FT ++       +   + +G   E ++++ G     + V +   +++  L+GY   P
Sbjct: 183 NVRFTLTSDDK---VLIKTNGSGRTNEVMAEIYGMKVAKDLVHITGDTSDYHLEGYVAKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +E+DP  VDVNVH
Sbjct: 240 EHSRSNRHYISIFINGRYIKNFVLNKAIVEGYHTLLTIGRYPICYINIEMDPILVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDN------ 349
           P K  +R      +   I+Q IQ+A   K +   +  +K     K++  F Q        
Sbjct: 300 PTKLEVRLSKEEQLYQLIVQKIQEAFKDKILIPHNDENKLYKKNKVLDVFEQQKLDFENR 359

Query: 350 ---APKTHLPKYATSLTNTQEKL---------------------------FLQENRLSTN 379
               P    P   T   N                                 L+ N  ++ 
Sbjct: 360 TASNPPAEKPDEETDRVNENSDTQAFQTNEQTSENGSDASYQAGQRAVLQDLEGNTKNSE 419

Query: 380 DLLPSDDPTYSEDNDPVEESE-----------ATHYQLGIACAQIHQNYIISQTTDGLVI 428
            L  S+  +    +  +E SE                      Q+H  YII+Q   G+ +
Sbjct: 420 GLFDSEATSNEAASAEIESSEDDVRETEHAKPHRRVPYMEVVGQVHGTYIIAQNETGMFM 479

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R          Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 480 IDQHAAQERIKYEYFRDKIGEVTNEVQNLLIPMTFHFSKDEQMIINQYKDELDKVGVHLE 539

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K+   ++++D+++ +++      ++   E     M+C  SI++
Sbjct: 540 PFGSHDYIVNSYPVWFPKEEAQEIIQDMVEYVLEHRKVD-IKKIREEAAIMMSCKKSIKA 598

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++E+LF R
Sbjct: 599 NHYLRNHEMADLIDQLREMEDPFTCPHGRPIIISFSNYELERLFKR 644


>gi|191639174|ref|YP_001988340.1| DNA mismatch repair protein [Lactobacillus casei BL23]
 gi|238693004|sp|B3W9W3|MUTL_LACCB RecName: Full=DNA mismatch repair protein mutL
 gi|190713476|emb|CAQ67482.1| DNA mismatch repair protein mutL [Lactobacillus casei BL23]
 gi|327383246|gb|AEA54722.1| DNA mismatch repair protein HexB [Lactobacillus casei LC2W]
 gi|327386431|gb|AEA57905.1| DNA mismatch repair protein HexB [Lactobacillus casei BD-II]
          Length = 651

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 174/642 (27%), Positives = 309/642 (48%), Gaps = 54/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++ +I+  G    +++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVLISAAGLQEIRVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ + L +    +  G 
Sbjct: 63  GIAPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVKLTT-AMDSGIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G ++ +    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 QIHVKGGEVEAQSTAAHRRGTDVEVNDLFFNTPARLKYMKSQQTELGKIVDIVSRLAMAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PDIAFTVSHDGNMVVR---TAGQGDLRQTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +E+D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVINIEMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------------LSK 339
           HP K+ +R      + + + ++I+  + K+ +   ++                    +S 
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRTRLAKENLIPDALDNLPKRERYDLDQLELTLNKISP 358

Query: 340 KMISSFHQDNAPK-----------THLPKYATSLTNTQ--------EKLFLQENRLSTND 380
           K + S       +           T   +   + T+          + +F +  RL+  D
Sbjct: 359 KTMPSVQPQQGQQLRENTTTNLADTAAEEPTPAPTSPDLEIGDLDDQPIFNEPQRLAAWD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQ--------LGIACAQIHQNYIISQTTDGLVIVDQH 432
                  +        +E E                  AQ+H  Y+++++ DGL I+DQH
Sbjct: 419 QRYQRLASNVVPTLMADEPEPDISHVESAERFPNLTYLAQVHGTYLLAESGDGLYILDQH 478

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  RQ         Q LL P ++D    +   I +H + L  +G+  E FG 
Sbjct: 479 AAQERVNYEYYRQAIGEVSNDQQHLLVPIVLDYSAADAISIRDHRDVLESVGLYLEDFGQ 538

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N+  +   P           +++++D ++      T+    E     M+C  +I++   +
Sbjct: 539 NSFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGR-MTVAAFREKTAIMMSCKRAIKANHHL 597

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DDRQARALLQKLPECENPFNCPHGRPVLVHFSNTDLEKMFKR 639


>gi|325686750|gb|EGD28776.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK72]
          Length = 698

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/636 (28%), Positives = 302/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 53  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 112

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 113 GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 172

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 173 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 232

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 233 PEVAFTLISDGREMIR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYISL 289

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 290 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 349

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +    +   +T LP   
Sbjct: 350 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRANKPEQTSLPLKE 409

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                                   +  S    Q     +     +  +  ++    S D 
Sbjct: 410 NRLYYDKEQNDFFLKPQVAEQQLSFEESAKPFQANTDEKTEPPQSTSVKFAERRPVSYDQ 469

Query: 394 ---------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                          D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 470 LDHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERV 529

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +R
Sbjct: 530 KYEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILR 589

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 590 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 648

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 649 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 684


>gi|293366739|ref|ZP_06613415.1| DNA mismatch repair protein HexB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319040|gb|EFE59410.1| DNA mismatch repair protein HexB [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 645

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 170/646 (26%), Positives = 310/646 (47%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGVSSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     KI   +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAEDGKIIHQKPAKAKKGTDIQVDSLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++  +  +      K+   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PEIRISLVSDGK---KLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDNAPKTH 354
           HP K  +R      + + I+  I++A   K +   + L+      K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNHAPKKNKVLETFEQQKINFEK 358

Query: 355 LPKY---------------------------ATSLTNTQEKLFLQE-------------- 373
                                          +TS TN +      E              
Sbjct: 359 QQSQIGETSAPYVHDQKDKNHDVESHKNNLDSTSSTNNESTEVSNELHNYIDDSYLQSQK 418

Query: 374 -----NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                   +T++     +   ++    V ++            Q+H  YII+Q  +G+ +
Sbjct: 419 EVLFDMEQNTSNEYEISNQQSNDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 479 IDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K+   ++++D+I+ ++    +  ++   E+    M+C  SI++
Sbjct: 539 HFGGHDYIVNSYPVWFPKEEAEEIIKDMIELVLKH-KSVDVKKIREDAAIMMSCKKSIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 NHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 643


>gi|125719036|ref|YP_001036169.1| DNA mismatch repair protein [Streptococcus sanguinis SK36]
 gi|166232112|sp|A3CR14|MUTL_STRSV RecName: Full=DNA mismatch repair protein mutL
 gi|125498953|gb|ABN45619.1| DNA mismatch repair protein, putative [Streptococcus sanguinis
           SK36]
          Length = 647

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 185/635 (29%), Positives = 301/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 63  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGRHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLVAQGGEIEEHVPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRASKPEQTSLPLKE 359

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTN-------------- 379
                                   +  S     E    +    ST+              
Sbjct: 360 NRLYYDKKQNDFFLKPQVAEQQLSFEESAKPVHEATDEKAEPQSTSVKFAERKPVSYDQL 419

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 540 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|156740125|ref|YP_001430254.1| DNA mismatch repair protein MutL [Roseiflexus castenholzii DSM
           13941]
 gi|156231453|gb|ABU56236.1| DNA mismatch repair protein MutL [Roseiflexus castenholzii DSM
           13941]
          Length = 605

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/608 (30%), Positives = 321/608 (52%), Gaps = 19/608 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   +  QIAAGE+IERP+  ++EL+EN+LDA + R+     GGG    ++ D+G
Sbjct: 1   MPIRVLDATVAAQIAAGEVIERPASVVRELVENALDAGARRIVVEARGGGLREIRVQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++E+ +A  RH TSK+S  DD  +I T GFRGEALPSI AV+ +  ++R    + G
Sbjct: 61  CGIPADEVELAFARHATSKLSTADDLWSIATLGFRGEALPSIAAVAQVICVTRAAGADVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G ++ ++ P   +PGT + VR+LF+  P R +FL+S+  E+  IT V+ + A+A
Sbjct: 121 VELRIAGGEVQAIMPRGCSPGTTISVRNLFYNTPVRRDFLRSDAAESAAITSVVTQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----ITLQ 234
           YP+V F+         +    S NG+      ++ G D     + ++    E    + ++
Sbjct: 181 YPEVRFSLVIDGRATLQ---TSGNGDLRAATIEIYGLDVARQLLAIDAAVGEGVDLVQVR 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI-RTAYAETIPLGRYPVVVLLLEIDPR 293
           G    P   R +    ++FIN R +Q +  ++ +   AY   +  GR+P+ +L + + P 
Sbjct: 238 GLVSPPGLTRSSRAAIHLFINRRAIQPRGQIAIVLEEAYHTLLMKGRHPMAILNITVHPA 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST--SSVLSKKMISSFHQDNAP 351
            VDVNVHP KS ++FRN T + + + ++++ A+ + G+       +   + ++  +    
Sbjct: 298 AVDVNVHPTKSEVKFRNTTQVMSVLGRAVRTALLESGVRPWEEPGVPASLDTAQRRFELR 357

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-----SEATHYQL 406
           +      +     +      +   +   D   +   + + + +P        + A+    
Sbjct: 358 RLGTSPESAWDAPSWMTAGDKHGEIPAMDDRRAVGQSSAWEREPAPPDAQLITHASKLPP 417

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                QI Q+YI++++ DG+ ++DQHAAHER+ +E++     +  I  Q LL P++IDL 
Sbjct: 418 LRIVGQIAQSYIVAESPDGMYLIDQHAAHERITYERLMAQRGAGAIERQELLIPQVIDLP 477

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
                ++++  + L   G   E FG  ++ IR IPA+L   ++   L +I D +     T
Sbjct: 478 PTAQDVLLDAADRLAEWGFAVEPFG-RSLRIRAIPAVLYPGDLATALLEIADHLSGRGGT 536

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
               D  E +L T++C+ S+RSG+ +   EM  L+ ++E+  +   C HGRPT I L  +
Sbjct: 537 TP-HDWREALLITLSCHTSVRSGQTLSFDEMRGLVLQLERCSSPRTCPHGRPTMILLTTT 595

Query: 587 DIEKLFGR 594
            IE+ FGR
Sbjct: 596 QIERQFGR 603


>gi|227533757|ref|ZP_03963806.1| DNA mismatch repair protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227188593|gb|EEI68660.1| DNA mismatch repair protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 651

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 175/642 (27%), Positives = 308/642 (47%), Gaps = 54/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++ +I+  G    +++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVLISAAGLQEIRVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ + L +    +  G 
Sbjct: 63  GIAPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVKLTTAT-DSGIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G ++ +    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+AIA 
Sbjct: 122 QIHVKGGEVEAQSTAAHRRGTDVEVNDLFFNTPARLKYMKSQQTELGKIVDIVSRLAIAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PDIAFTVSHDGNMVVR---TAGQGDLRQTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +E+D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVINIEMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------------LSK 339
           HP K+ +R      + + + ++I+  + K+ +   ++                    +S 
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRTRLAKENLIPDALDNLPKRERYDLDELELTLNKISP 358

Query: 340 KMISSFHQDNAP-------------KTHLPKYATSLTNTQ------EKLFLQENRLSTND 380
           K + S                        P  A +  + +      + +F +  RL+  D
Sbjct: 359 KTMPSVQPQQGQHLRENTTTNLADAAAEEPTPAPTSPDLEIGDLDDQPIFNEPQRLAAWD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQ--------LGIACAQIHQNYIISQTTDGLVIVDQH 432
                  +        +E E                  AQ+H  Y+++++ DGL I+DQH
Sbjct: 419 QRYQRLASNVVPTLVADEPEPDISHVESAERFPNLTYLAQVHGTYLLAESGDGLYILDQH 478

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  RQ         Q LL P ++D    +   I +H + L  +G+  E FG 
Sbjct: 479 AAQERVNYEYYRQAIGEVSNDQQHLLVPIVLDYSAADAISIRDHRDVLESVGLYLEDFGQ 538

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N+  +   P           +++++D ++      T+    E     M+C  +I++   +
Sbjct: 539 NSFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGR-MTVAAFREKTAIMMSCKRAIKANHHL 597

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DDRQARALLQKLPECENPFNCPHGRPVLVHFSNTDLEKMFKR 639


>gi|325695324|gb|EGD37224.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK150]
          Length = 698

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 187/636 (29%), Positives = 303/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 53  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 112

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 113 GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 172

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 173 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 232

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 233 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 289

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 290 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 349

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 350 HPTKQEVRISKERELMALISQAISTSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 409

Query: 360 TSLTNTQE------KLFLQENRLSTN---------------------------------- 379
             L   +E      K  + E +LS                                    
Sbjct: 410 NRLYYDKEQNDFFLKPQVAEQQLSFEETADPVQANTDEKAEPPQSTSVKFAERRPVSYDQ 469

Query: 380 -DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
            D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 470 LDHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERV 529

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +R
Sbjct: 530 KYEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILR 589

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 590 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 648

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 649 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 684


>gi|121997465|ref|YP_001002252.1| DNA mismatch repair protein MutL [Halorhodospira halophila SL1]
 gi|121588870|gb|ABM61450.1| DNA mismatch repair protein MutL [Halorhodospira halophila SL1]
          Length = 620

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 203/613 (33%), Positives = 337/613 (54%), Gaps = 21/613 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + +I+QIAAGE++ERP   +KEL+ENSLDA + RVE  I  GGK   +I D+G G
Sbjct: 6   IRPLPDNLIDQIAAGEVVERPGSVVKELVENSLDAGAGRVEVQIERGGKQRIRIADDGDG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EE+ +A++RH TSK++  ++   I + GFRGEALPSI AVS LTL SR  +   G Q
Sbjct: 66  IPPEELELALRRHATSKLTGLEELERIASLGFRGEALPSIAAVSRLTLASRTAEAELGHQ 125

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  + +  PVA  PGT V V DLF+  P R  FL++E+ E   + + +RR+A++  
Sbjct: 126 LRCDGGALGAPEPVAHPPGTTVTVDDLFYNTPGRRKFLRTERTELYHVQEALRRLALSRF 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F+        + +    +     ER+++++G  F ++A+ +  +   + L+G+ G+P
Sbjct: 186 DVGFSLVHQGRRLWSVPRAESETERHERLAELLGRAFADHALAVELEGAGLQLRGWLGLP 245

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T  R   +  Y+F+NGR V+D+     IR AY++ +    YP  VL LE+DP +VDVNVH
Sbjct: 246 TAARRQGDLQYLFVNGRLVRDRGAAHGIRQAYSDCLYRDHYPAYVLFLEMDPARVDVNVH 305

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RFR+   + +F+ + I  A+     + ++               P        T
Sbjct: 306 PMKHEVRFRDGRTVHDFLARRIADALATAEPAGAAAPPAAERPPSGAPTGPGQPAAAERT 365

Query: 361 SLTN--------------TQEKLFLQENRLSTNDLLPSDDPTYSE-----DNDPVEESEA 401
              +                 +L+   +  +      ++  + +       +   +    
Sbjct: 366 GPASEGLGGTAELGLPLAEARQLYGGADAAAEGPGGAAEGASSAIAGSPGPSQTRDRESE 425

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
              +LG A  QI   YI++++  GLV+VD HAAHER+++E+M+    ++ I +Q+LL P 
Sbjct: 426 ATPELGYAVGQIRDAYILAESQRGLVVVDMHAAHERVVYERMKAQLVASGIATQSLLVPV 485

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
            + +   E   +  H   L R G++ +R GP ++ +  +PA+L++ +   L+RD +  + 
Sbjct: 486 SVPVTPAEAERVELHAATLARAGLEVDRAGPESVRVHRVPALLAEADAAALVRDAVAALE 545

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
              T   ++DR+  +LA MAC+GS+R+GR+++  EM+ LLR++E+ P ++QCNHGRPT+ 
Sbjct: 546 SEGTGGRVEDRVHALLAQMACHGSVRAGRRLERAEMDALLRDIERTPRAAQCNHGRPTYT 605

Query: 582 KLKLSDIEKLFGR 594
            L    + +LF R
Sbjct: 606 VLDDEALARLFMR 618


>gi|254168302|ref|ZP_04875148.1| DNA mismatch repair protein MutL [Aciduliprofundum boonei T469]
 gi|197622811|gb|EDY35380.1| DNA mismatch repair protein MutL [Aciduliprofundum boonei T469]
          Length = 574

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/594 (31%), Positives = 319/594 (53%), Gaps = 42/594 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   I+ +IAAGE++ERP+  +KEL+ENS+DA ++++   + GGG    ++ D+G G
Sbjct: 19  IRVLPPNIVEKIAAGEVVERPASVVKELVENSIDAGATKIAIYVDGGGTKRIRVVDDGCG 78

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E+  +A++RH TSKI   +D + I T GFRGEALPSI AVS LT++++  ++  G +
Sbjct: 79  MSEEDAILALKRHATSKIKSEEDLNRISTLGFRGEALPSIAAVSKLTIITKRKEDLVGTK 138

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G +I ++  +   PGT V V +LF+  PAR  FLKSE+ E   I  ++ + AI Y 
Sbjct: 139 IHVEGGEIKNITSIGAPPGTSVLVEELFYNAPARRKFLKSERSEFFQIYSIVEKYAIIYE 198

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F         + +       N   RI+++ G++  +  VE+ +  N + ++G    P
Sbjct: 199 NIHFKLVHNGKEIFNLPP----SNLKARIARLWGKEIADAMVEIKKS-NRMKIKGLIAKP 253

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N+  +F+NGR V+ + I   +   Y   +    YP+ +L ++++P ++DVNVH
Sbjct: 254 YQVRRDKNKLLIFVNGRYVKSRIIEDALVEGYGTLLFRDSYPIAILKIQVEPDEIDVNVH 313

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK +++F++   I+  I   I  ++ K+    S +++++                    
Sbjct: 314 PAKLFVKFKDENRIKKEIANLIWSSLTKEENIPSKIIARE-------------------- 353

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                 EK+ ++  +    D+         ED  P+               Q+   YII 
Sbjct: 354 ---ERAEKIKIEREKQMVFDVEEPSKMRRIEDFIPI-----MRTIPMEILGQVDDTYIIL 405

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           ++++GLVIVDQHAAHER+ +E+  +D     I    LL P I++L   E   I+E  E L
Sbjct: 406 KSSEGLVIVDQHAAHERIRYERFLRDMKDKNIQ--KLLEPIILNLDYKEYQFILEQKESL 463

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G   E FG N+I +R IP IL+K++    +R+I           +++++ + ++  +
Sbjct: 464 RDYGFIIEDFGTNSIVVRGIPPILTKRDAEDAIREIAQL-----GPKSIEEKRDELIKLI 518

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C G+I++ +K+   EM +L+ ++ +  N   C HGRPT IK+K  D+EK+F R
Sbjct: 519 SCKGAIKAHQKLSQFEMEKLIMDLLRCENPYTCPHGRPTMIKIKNEDLEKMFKR 572


>gi|324989666|gb|EGC21610.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK353]
 gi|327472200|gb|EGF17637.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK408]
          Length = 688

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 184/635 (28%), Positives = 301/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 44  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 103

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 104 GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 163

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 164 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 223

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 224 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 280

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 281 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 340

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 341 HPTKQEVRISKERELMALISQAISTSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 400

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTN-------------- 379
                                   +  +    Q     +    ST+              
Sbjct: 401 NRLYYDKEQNDFFLKPQVAEQQLSFEETADPVQANTDEKAEPQSTSVKFAERKPASYDQL 460

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 461 DHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 520

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 521 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 580

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 581 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 639

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 640 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 674


>gi|322421005|ref|YP_004200228.1| DNA mismatch repair protein MutL [Geobacter sp. M18]
 gi|320127392|gb|ADW14952.1| DNA mismatch repair protein MutL [Geobacter sp. M18]
          Length = 665

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 199/665 (29%), Positives = 332/665 (49%), Gaps = 76/665 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N+IAAGE++ERP+   KEL+EN+LDA S  V   I  GG+   ++TD+G 
Sbjct: 4   RIRILPENLTNKIAAGEVVERPASVAKELVENALDAGSKEVAVEIESGGRRLIKVTDSGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +A++RH TSKI+  +D   + T GFRGEALPS+ +VS LT+ +R   +  G 
Sbjct: 64  GMSREDALLALERHATSKIASDEDLFALTTLGFRGEALPSVASVSRLTISTRTSDSLEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G +I  V+   M  GT++ VR+LFF  PARL F+KS   E   + +++ R+AI+ 
Sbjct: 124 EIYLEGGRIKEVKECGMATGTVIAVRNLFFNTPARLKFMKSADTEGGHVGELLTRLAISR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-EITLQGYTG 238
           P V FT+         + F++ + +  ER++ ++G    +    ++ +    + + G   
Sbjct: 184 PDVRFTYKNDGK----VVFRALDADLKERVATLLGRSIASFLYPVSYQDQGGVRVSGLVA 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  +R  A+  Y +INGR ++DK +   I  AY   +  GRYPVV + ++I P +VDVN
Sbjct: 240 APECSRSAASHLYTYINGRFIKDKVVQHAILQAYRNFLERGRYPVVAVFIDIAPGEVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI--------------------------- 331
           VHP K  +RFR    + + I  +++  + +                              
Sbjct: 300 VHPTKHEVRFREQGRVHDAIQCAVESVLKQTPWLKRAVPAAAPGRPAEGASVAMVEPAVV 359

Query: 332 ----------STSSVLSKKMISSFHQDNAPKTHLPKYATSLT------------------ 363
                      + +   +  + +       +  LP    + +                  
Sbjct: 360 ARAEAATASLRSPADAWQPPVPTPSAPLRQEQALPAQTANRSVSEATQSVSEAKVAEIRE 419

Query: 364 -----NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---------SEATHYQLGIA 409
                  + +  L+    +      + + +   D   ++E             ++     
Sbjct: 420 LLVGYQPKPQPPLRPQYHAEPPARNAAEVSPPVDQPKLDEKASARQPESEAPGYFSSLAV 479

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q + +YI+ Q    LV++DQHAAHER+ FEK++ +F   ++ SQ LL PE ++L   E
Sbjct: 480 IGQFNASYILCQRGTDLVLIDQHAAHERVAFEKLKGEFVGREVDSQGLLFPETLELSFRE 539

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
            A++ EH E+L RLG   E FG N   +  +P ILS     + +RDI++E+   S + T 
Sbjct: 540 SAVLREHVEELRRLGFSFEEFGGNTWLLNGVPQILSGTQYLRTIRDILEELASLSRSRTF 599

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            D  E++LA +AC+  +R  R +  +E++ L R+M++   SS C HGRP    L L+++E
Sbjct: 600 TDIQEDLLARIACHSVVRGRRTLTPLEISALFRQMDQTDFSSNCPHGRPVMQALTLAEVE 659

Query: 590 KLFGR 594
           K+F R
Sbjct: 660 KMFKR 664


>gi|329736536|gb|EGG72802.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 645

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 169/646 (26%), Positives = 309/646 (47%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGVSSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     KI   +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAEDGKIIHQKPAKAKKGTDIQVDSLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++  +  +      K+   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PEIRISLVSDGK---KLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FIN R +++  +   I   Y   + +GR+P+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINSRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDNAPKTH 354
           HP K  +R      + + I+  I++A   K +   + L+      K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNHAPKKNKVLETFEQQKINFEK 358

Query: 355 LPKY---------------------------ATSLTNTQEKLFLQE-------------- 373
                                          +TS TN +      E              
Sbjct: 359 QQSQIGETSAPYVHDQKDKNHDVESHKNNLDSTSSTNNESTEVSNELHNYIDDSYLQSQK 418

Query: 374 -----NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                   +T++     +   ++    V ++            Q+H  YII+Q  +G+ +
Sbjct: 419 EVLFDMEQNTSNEYEISNQQSNDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 479 IDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K+   ++++D+I+ ++    +  ++   E+    M+C  SI++
Sbjct: 539 HFGGHDYIVNSYPVWFPKEEAEEIIKDMIELVLKH-KSVDVKKIREDAAIMMSCKKSIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 NHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 643


>gi|167040249|ref|YP_001663234.1| DNA mismatch repair protein [Thermoanaerobacter sp. X514]
 gi|300914333|ref|ZP_07131649.1| DNA mismatch repair protein MutL [Thermoanaerobacter sp. X561]
 gi|307724431|ref|YP_003904182.1| DNA mismatch repair protein MutL [Thermoanaerobacter sp. X513]
 gi|238687562|sp|B0K1A3|MUTL_THEPX RecName: Full=DNA mismatch repair protein mutL
 gi|166854489|gb|ABY92898.1| DNA mismatch repair protein MutL [Thermoanaerobacter sp. X514]
 gi|300889268|gb|EFK84414.1| DNA mismatch repair protein MutL [Thermoanaerobacter sp. X561]
 gi|307581492|gb|ADN54891.1| DNA mismatch repair protein MutL [Thermoanaerobacter sp. X513]
          Length = 614

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 193/616 (31%), Positives = 320/616 (51%), Gaps = 29/616 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L EK IN+I+AGE++ERP+  +KELIENS+DA S  +   I  GG  + +++D+G 
Sbjct: 3   KIHLLDEKTINKISAGEVVERPASIVKELIENSIDAGSKNITVEILEGGIPYIKVSDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI    D  +I T GFRGEAL SI AVSH+TL ++      G 
Sbjct: 63  GMNEIDAILAFERHATSKIKSDNDLYSIGTLGFRGEALASIAAVSHVTLQTKEEGALFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K+          G  +EVRD+FF  PAR  FLK    E+  I DV+ ++ +++
Sbjct: 123 KVVVEGGKVVEKTTCGCAKGCSIEVRDVFFNTPARRKFLKRPSTESMYIIDVVTKLCLSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF +   +  ++     S NGN  + I ++ G +  ++ +  + +S ++ L+   G 
Sbjct: 183 PEVSFKYVKDRKLQF---ITSGNGNIEDVILRLFGNEVYSSLMSASFESEDLKLKILAGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            + N  N N  + ++NGR V++K + + +  A+   IP+ RYP V L +EIDPRQ+DVN+
Sbjct: 240 NSLNYSNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAP 351
           HP+K  I+F +   I   + ++I+ +++K  +     + +K           S  Q    
Sbjct: 300 HPSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISAEQTKLY 359

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG---- 407
            T   K         +  F  +N    +++L  +    S DN      E  H +      
Sbjct: 360 LTSSDKELEEEKKKFDNEFKGKNVFLKDNVLKENSKNSSLDNHLAVYEEYEHEKEEINKN 419

Query: 408 ---------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                         +   YII +  D   I+DQHAAHER+++EK    +   KI ++ + 
Sbjct: 420 DLAKKISDIRIVGTLFSTYIIVEKEDVFYIIDQHAAHERILYEKFTSQYE--KIQTRQVT 477

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P +++L   +  L+ +  E L++LG   E FG N I +RE+P IL +    QL  DI++
Sbjct: 478 FPIVVELQPRDLELVHQEKELLNKLGYVFEEFGNNCIILREVPVILGQPEARQLFIDIVE 537

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++ D      +  + ENI+  MAC  ++++   +   E+++L  +++   N   C HGRP
Sbjct: 538 KLKDKELINKISLKEENII-MMACKAAVKAMDNLSEKEIHKLFDDLKITENPYTCPHGRP 596

Query: 579 TFIKLKLSDIEKLFGR 594
             I +  + +EK+F R
Sbjct: 597 VIIAITKTQLEKMFKR 612


>gi|50085465|ref|YP_046975.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter sp.
           ADP1]
 gi|49531441|emb|CAG69153.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Acinetobacter sp.
           ADP1]
          Length = 653

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 209/642 (32%), Positives = 342/642 (53%), Gaps = 49/642 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE+IERP+  +KEL+EN++DA ++ +   +A GG +  +I DNG 
Sbjct: 10  RIHTLDPALANQIAAGEVIERPASVVKELLENAIDAGATELIIRVAQGGSTLIEIIDNGL 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV RH TSKI   +D   I + GFRGEAL SI AVS L+LMS    +  G 
Sbjct: 70  GIHPDDLPLAVMRHATSKIKTPEDLHAIVSLGFRGEALASIAAVSRLSLMSSQTDDGVGY 129

Query: 120 QIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++        ++ +A+  GT + V+DLFF +PAR  FLK    E   I +++RR+A+
Sbjct: 130 QVEVNGTAFDHQEIQAIALRKGTHIRVQDLFFNVPARRKFLKKPSTEFGHIEEIVRRLAL 189

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            + ++ F        +  +    +     +R+ Q++G+ F  NA  L+ +S  + L G+ 
Sbjct: 190 THFEIRFVLEHNDQIKLNLPIADSGVLRFQRVQQLLGQQFTQNAYWLDTESISMRLSGWL 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R  A+  YV++NGR V+DK I   +R AY   +   +Y   +L LE+DP QVDV
Sbjct: 250 GHPSDARSQADLQYVYVNGRIVKDKTISHALRMAYDGILHGHQYSAYLLFLEVDPDQVDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS----------------KKM 341
           NVHP K  IRF N   +  F+    ++ + +   +++ +                   + 
Sbjct: 310 NVHPTKHEIRFLNQREVHEFVRHHAKETLAQFQTASADLAQAMKSNEPKDILRDQPKHQE 369

Query: 342 ISSFHQDNAPKTHLPKYA----------------TSLTNTQEKLFLQENRLSTNDLLPSD 385
             S H+ +A +  +   A                T    ++ K      R+   D +  +
Sbjct: 370 QFSLHRTDATENPVVNRAEDTQIEYRKELSTDLLTEFNASRPKTVEYSTRMPVRDPVQLN 429

Query: 386 DPTYSEDNDPVEESEA------------THYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
           +   +      EES +              + LG+A AQ+H  YI++Q T+GL+IVD HA
Sbjct: 430 NALKTYLAPLREESGSAITASSDVVSGVDEFPLGVAIAQLHGIYILAQNTEGLIIVDMHA 489

Query: 434 AHERLIFEKMRQDFNSTKIT-SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AHER++ ++M+  ++  +   SQ LL P+II +   + + I +    L RLG+  +++G 
Sbjct: 490 AHERILLQQMKAAWDKPEFWISQQLLIPKIISITRMQASRIEDLKSQLLRLGLDIDQYGD 549

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
               +R +PAIL K N  +L+ +++ ++  +     L  + + ILA MAC+G++R+ R +
Sbjct: 550 EQAIVRGVPAILQKANFEKLIPELLHDLDPNDEAQALLQKRDTILAGMACHGAVRAHRML 609

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EMN LLR+ME+   +SQCNHGRPT+    L  ++KLF R
Sbjct: 610 SLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLHQLDKLFAR 651


>gi|227891124|ref|ZP_04008929.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741]
 gi|227866998|gb|EEJ74419.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741]
          Length = 659

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/649 (28%), Positives = 309/649 (47%), Gaps = 61/649 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE++ERP+  +KEL+ENS+DA + +++ +I   G    QI D+G 
Sbjct: 3   KIHELSEILANQIAAGEVVERPASVVKELVENSIDAGAKQIDIIIEDAGLKSIQIIDDGN 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++  A +RH TSKI D  D   +HT GFRGEALPSI +VS + + +       G 
Sbjct: 63  GIEAEDVETAFKRHATSKIIDRKDLFKVHTLGFRGEALPSIASVSDVVMETAVSGQA-GT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G ++      A   GT + V DLF+  PARL +LKS Q E + I+D++ R+A+++
Sbjct: 122 KIHIKGGEVLEKTLSASREGTTITVSDLFYNTPARLKYLKSVQTELSYISDIVNRLALSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+ + +       ++   + NGN  + I  + G       V+  + + +  + GYT +
Sbjct: 182 TDVALSLTNNGR---QLLQSAGNGNLQQTIGAIYGVQNARQMVKFEDANLDFKISGYTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  +   +   Y   +  GRYP+ VL + +DP  VDVNV
Sbjct: 239 PKLTRASRNYISLLVNGRYVKNFQLTKAVIEGYGSKLMTGRYPITVLSIGLDPTLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------QDN 349
           HP K  I+      +  FI ++I + I ++ +    + + K  +              + 
Sbjct: 299 HPTKQEIKISKEDELVTFIKKTIFERIGQENLIPDGLQNIKSKTKEKLDFEQLKVGLNEA 358

Query: 350 APKTHLPKYATSLTNT------------------------------------QEKLFLQE 373
           + +    ++ T +T                                      ++K  L+ 
Sbjct: 359 SKQYQTKQHRTGITPEVTAALVGEKLTKDESQTQTNEKIKEETKVELSPIIIKDKQDLKS 418

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEES--------EATHYQLGIACAQIHQNYIISQTTDG 425
           +R+   D         +E     EES        +A  + +     Q+H  ++ ++  +G
Sbjct: 419 DRVKEWDEKYQSRNKETEVTSIAEESGSVDDERKDAPRFPILRYIGQMHGTFLFAEGEEG 478

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L IVDQHAA ER+ +E  R++      T Q LL P ++     +  +I E+ + L  LGI
Sbjct: 479 LYIVDQHAAQERVKYEYYREEIGKVSPTQQNLLVPIVLTYPTTDSLIINENVDKLKELGI 538

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FG N   IR+ P    +     ++R++ID  +      ++    E     M+C  S
Sbjct: 539 YLEDFGQNTYIIRQHPTWFKEGQEESIIREMIDYFL-KDRKLSIAKFREKTAIMMSCKRS 597

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I++   +   +   +L +++   N   C HGRP  +KL   D+E +F R
Sbjct: 598 IKANHHLDDKQAKSILEQLKTCENPFNCPHGRPVLVKLSNKDLEHMFKR 646


>gi|193214447|ref|YP_001995646.1| DNA mismatch repair protein MutL [Chloroherpeton thalassium ATCC
           35110]
 gi|238692707|sp|B3QW86|MUTL_CHLT3 RecName: Full=DNA mismatch repair protein mutL
 gi|193087924|gb|ACF13199.1| DNA mismatch repair protein MutL [Chloroherpeton thalassium ATCC
           35110]
          Length = 640

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/641 (28%), Positives = 299/641 (46%), Gaps = 54/641 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL + + N+I+AGE+++RP+ A+KEL+EN++DA +  +   I   GK+  Q+ DNG G
Sbjct: 4   IKKLPDIVANKISAGEVVQRPASAVKELLENAIDAGADEITLAIKAAGKTLIQVIDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E+  +  +R  TSKISD  D  N+HT GFRGEAL SI +VS + L ++   + TG  
Sbjct: 64  LSEEDATLCFERFATSKISDVGDLENLHTLGFRGEALASIASVSQVELKTKRYDDRTGTL 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG +   V       GT   +R+LF+ +PAR  FLK+   E   I + ++   + YP
Sbjct: 124 VKISGGRFEEVSRTETPNGTAFSIRNLFYNVPARRKFLKTNATEYKHIFETVQAQTLVYP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + + F +     +       N N  ER+    G+DF  N +E  E+++ + L+GY G P
Sbjct: 184 DIKWRFYSDDEEIFSFL----NNNLSERLDYFFGKDFSQNLIEFTEENDFMKLRGYLGKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +   NQ ++FIN R  Q K + S I TAY E +    YP  ++ ++I P  +DVNVH
Sbjct: 240 AMMKRTKNQQFLFINNRVTQSKLLSSAIMTAYGELLGEREYPFFLIYMDIAPHYIDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA---------- 350
           P K  ++F +   I N +   ++  I     S +  + +K  S      +          
Sbjct: 300 PTKMEVKFDDERNIYNMVHSVVKHRIKTLDFSPNVQVEEKPDSPRPTGESFNFPGVAKRL 359

Query: 351 -------------------------------------PKTHLPKYATSLTNTQEKLFLQE 373
                                                PK  +   ++   +T+  L   +
Sbjct: 360 SYNDRDADMRSSNALFRDYKTYYKAQDERAEPGFFANPKREMDWRSSLPAHTEASLTPPK 419

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                 +    D     E      + E           Q+H  YI++Q   GL+I+DQH 
Sbjct: 420 QAEPEGNPTFHDGSRQMEIFIQSRDDEPATAGQERFVWQLHNTYILTQIKSGLLIIDQHV 479

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AHER+++E+      S    SQ LL P    L   E  ++ E   DL +LG         
Sbjct: 480 AHERILYERAIAVMESNVPNSQQLLFPHSAKLSAWEFDVLKEIKTDLVQLGFSLRILDQR 539

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
            + +  IP  +      ++L +++++  D      L+ R +N+  + AC  SI +G+K+ 
Sbjct: 540 TVLVEGIPPDVMPGREERILHEMLEQYQDYQQNLKLEQR-DNVAKSYACRSSIMAGQKLS 598

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             EM  L+ ++        C HGRP  IKL + +++K+FGR
Sbjct: 599 RNEMTSLIDQLFATSMPYVCPHGRPIIIKLSIEELDKMFGR 639


>gi|262283653|ref|ZP_06061418.1| DNA mismatch repair protein mutL [Streptococcus sp. 2_1_36FAA]
 gi|262260710|gb|EEY79411.1| DNA mismatch repair protein mutL [Streptococcus sp. 2_1_36FAA]
          Length = 648

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 185/636 (29%), Positives = 301/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENSLDA +S++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPSSVVKELVENSLDAGASQITIEIEEAGLKTIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 63  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATENGQHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 359

Query: 357 -------------------KYATSLTNTQEKLFLQENRLSTN------------------ 379
                              +   S   + + +    N  S                    
Sbjct: 360 NRLYYDKEQNDFFLKPQVAEQQISFEKSAKPVHEATNEKSEPPQSTSVKFAERKLVSYDQ 419

Query: 380 -DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
            D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 420 LDHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERV 479

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +R
Sbjct: 480 KYEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILR 539

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 540 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 598

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 634


>gi|332799275|ref|YP_004460774.1| DNA mismatch repair protein mutL [Tepidanaerobacter sp. Re1]
 gi|332697010|gb|AEE91467.1| DNA mismatch repair protein mutL [Tepidanaerobacter sp. Re1]
          Length = 613

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 195/615 (31%), Positives = 319/615 (51%), Gaps = 27/615 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L + I +QIAAGEIIERP   +KEL+ENS+DA S  +   I  GGK   ++ D+G 
Sbjct: 3   KINILEQDIASQIAAGEIIERPVSVVKELVENSIDAGSKNIIVEIEKGGKKSIRVIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ ++I +A +RH TSKI+  +D  +I+T GFRGEAL SI AVS+L++ ++      G 
Sbjct: 63  GISRDDIRLAFERHATSKINVIEDIFHINTLGFRGEALASIAAVSNLSVTTKTRNEPIGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              IS   I  V   A   G ++EV++LFF  PARL FL S+  E + ITD+I R A+  
Sbjct: 123 ICKISAGVIEDVSETASKNGCLIEVKNLFFNTPARLKFLSSDTHENSRITDLITRFAMGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +SF     K    ++ + S NG++ E I++V G D     + + +  +   + GY   
Sbjct: 183 INISFRLIIDKK---ELFYSSGNGDYREVIAKVYGMDLAKQILYIEKAFDNGKIWGYISK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+FNRGN      F+N R V+D  +   +  AY   IP+ R+P+ ++ ++ID   VDVNV
Sbjct: 240 PSFNRGNRTGQTFFVNNRFVKDLGLTFCLERAYKTMIPIRRFPIAIIFIDIDNSLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------- 350
           HP+K  I+F+N   + + +  +I + +    +     LS   +    Q  +         
Sbjct: 300 HPSKMEIKFQNENQVHHALFHAINETLKNHVLIPKETLSISPVKQSQQQISIETQVELTS 359

Query: 351 ---PKTHLPKYATSLTNTQEKLFLQENRLSTN----DLLPSDDPTYSEDNDPVEESEATH 403
              P        +S  N Q     +  R +      D + + +   ++   P+E  E   
Sbjct: 360 DGLPDNEYDVSDSSNINNQTAATKEFVREAYTVIDVDAIKNKEHLQNDSYIPIESDETMQ 419

Query: 404 ----YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
               Y+      Q+   YI+ ++ +   ++DQHAAHER+++E   + +      SQTL  
Sbjct: 420 IIKKYEFQKILGQLFNTYIVVESKNRFYLIDQHAAHERILYEYYSKKYAKQLSNSQTLAA 479

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P ++ L   E  L+  + ED+ ++G     FG ++I IR +P I +K   P  LRD +D+
Sbjct: 480 PYVLYLSAQEMMLLDNYKEDILKIGFDFSIFGSDSILIRSVPYIFNKPVDPITLRDALDQ 539

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           +  +          E ++ +M+C+ +I++G  +  IE+  LL +++K      C HGRPT
Sbjct: 540 LSSNEYARYPSK--ERLIISMSCHAAIKAGDVLSPIEIQELLDQLKKTEVPYTCPHGRPT 597

Query: 580 FIKLKLSDIEKLFGR 594
            I + L++++K F R
Sbjct: 598 IIDITLNELQKKFKR 612


>gi|323464584|gb|ADX76737.1| DNA mismatch repair protein MutL [Staphylococcus pseudintermedius
           ED99]
          Length = 646

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 301/647 (46%), Gaps = 59/647 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   + N+IAAGE++ERPS  +KEL+ENS+DA ++ +   +   G +  ++ DNG 
Sbjct: 3   KIKTLHTSLANKIAAGEVVERPSSVVKELLENSIDAGATEINIEVMESGIASIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSK+   DD  +I T GFRGEAL SI +V+ +TL +       G 
Sbjct: 63  GILQDDLGLVFHRHATSKLVEDDDLFHIRTLGFRGEALASIASVAKVTLQTST-DGVAGY 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I S +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EVYAEEGEIISEKPAKARKGTDIRVDALFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +    S       + N    +G   E ++++ G     + + +   +++  L GY   
Sbjct: 182 PDIRIALSNDGKKILQTN---GSGRTNEVMAEIYGMKVARDLIRIEGDTSDYHLTGYVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   ++  Y   + +GRYP+V L +E+DP  VDVNV
Sbjct: 239 PEHSRSNRHYISLFINGRYIKNFLLNKAVQEGYHTLMMIGRYPIVYLNIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL-----SKKMISSFHQDNAPKTH 354
           HP K  +R      + + I+  I++A   + +   + L      KK+++ F Q       
Sbjct: 299 HPTKLEVRLSKEDQLFDLIVAKIREAFKDQLLIPKNDLKSKYEPKKVLNQFEQQKMAFDQ 358

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT-------------------------- 388
           +    T  +++ +++ + E      D+    D                            
Sbjct: 359 IQAAQTQTSHSNKEMTIDEEPAPYTDVTEPSDTAKTPTTSETNDDYAERQRALLNDMVEA 418

Query: 389 ---------------------YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
                                  +++    +             Q+H  YII+Q  +G+ 
Sbjct: 419 PSPINEVNSTDDSSDGATVSEIQQNHPQPSDKPKRRVPYMEVVGQVHGTYIIAQNDEGMY 478

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQHAA ER+ +E  R         +Q+LL P   +  + E  +I +H + L   GI  
Sbjct: 479 LIDQHAAQERIKYEYYRDKIGEVNNENQSLLIPLTFNFTKDEQLIIEQHLDPLREAGIFL 538

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E FG +   +   P    ++N+ ++++D+I+ +I       +    E     M+C  SI+
Sbjct: 539 EPFGGHDYIVDSYPVWFPQENVEEMIKDMIEYVIRHKKVD-IAKFREEAAIMMSCKRSIK 597

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   ++  EM  L+ ++ +  +   C HGRP  I     ++E+LF R
Sbjct: 598 ANHYLKPNEMADLIDQLGEMEDPFTCPHGRPVIINFSNYELERLFKR 644


>gi|27467893|ref|NP_764530.1| DNA mismatch repair protein [Staphylococcus epidermidis ATCC 12228]
 gi|57866809|ref|YP_188446.1| DNA mismatch repair protein [Staphylococcus epidermidis RP62A]
 gi|251810728|ref|ZP_04825201.1| DNA mismatch repair protein MutL [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876271|ref|ZP_06285138.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus epidermidis SK135]
 gi|38372356|sp|Q8CPE9|MUTL_STAES RecName: Full=DNA mismatch repair protein mutL
 gi|71151980|sp|Q5HPP4|MUTL_STAEQ RecName: Full=DNA mismatch repair protein mutL
 gi|27315438|gb|AAO04572.1|AE016747_69 DNA mismatch repair protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637467|gb|AAW54255.1| DNA mismatch repair protein HexB [Staphylococcus epidermidis RP62A]
 gi|251805888|gb|EES58545.1| DNA mismatch repair protein MutL [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295296|gb|EFA87823.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus epidermidis SK135]
 gi|329728043|gb|EGG64487.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus epidermidis VCU144]
          Length = 645

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 170/646 (26%), Positives = 310/646 (47%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGVSSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     KI   +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGKIIHQKPAKAKKGTDIQVDSLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++  +  +      K+   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PEIRISLVSDGK---KLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDNAPKTH 354
           HP K  +R      + + I+  I++A   K +   + L+      K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNHASKKNKVLETFEQQKINFEK 358

Query: 355 LPKY---------------------------ATSLTNTQEKLFLQE-------------- 373
                                          +TS TN +      E              
Sbjct: 359 QQSQIGETSAPYVHDQKDKNHDVESHKNNLDSTSSTNNESTEVSNELHNHIDDSYLQSQK 418

Query: 374 -----NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                   +T++     +   ++    V ++            Q+H  YII+Q  +G+ +
Sbjct: 419 EVLFDMEQNTSNEYEISNQQSNDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 479 IDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K+   ++++D+I+ ++    +  ++   E+    M+C  SI++
Sbjct: 539 HFGGHDYIVNSYPVWFPKEEAEEIIKDMIELVLKH-KSVDVKKIREDAAIMMSCKKSIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 NHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 643


>gi|319892318|ref|YP_004149193.1| DNA mismatch repair protein MutL [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162014|gb|ADV05557.1| DNA mismatch repair protein MutL [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 646

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 169/647 (26%), Positives = 299/647 (46%), Gaps = 59/647 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   + N+IAAGE++ERPS  +KEL+ENS+DA ++ +   +   G +  ++ DNG 
Sbjct: 3   KIKTLHTSLANKIAAGEVVERPSSVVKELLENSIDAGATEINIEVMESGIASIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSK+   DD  +I T GFRGEAL SI +V+ +TL +       G 
Sbjct: 63  GILQDDLGLVFHRHATSKLVEDDDLFHIRTLGFRGEALASIASVAKVTLQTST-DGVAGY 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I S +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EVYAEEGEIISEKPAKARKGTDIRVDALFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +    S       + N    +G   E ++++ G     + + +   +++  L GY   
Sbjct: 182 PDIRIALSNDGKKILQTN---GSGRTNEVMAEIYGMKVARDLIRIEGDTSDYHLTGYVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   ++  Y   + +GRYP+V L +E+DP  VDVNV
Sbjct: 239 PEHSRSNRHYISLFINGRYIKNFLLNKAVQEGYHTLMMIGRYPIVYLNIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL-----SKKMISSFHQDNAPKTH 354
           HP K  +R      + + I+  I++A   + +   + L      KK++  F Q       
Sbjct: 299 HPTKLEVRLSKEDQLFDLIVAKIREAFKDQLLIPKNDLKSKYEPKKVLDQFEQQKMAFDQ 358

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT-------------------------- 388
                T  +++ +++ + E      D+    D                            
Sbjct: 359 TQAAQTQTSHSNKEMTIDEEPAPYTDVTEPSDTAKTPTTSETNDDYAERQRALLNDMVEA 418

Query: 389 ---------------------YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
                                  +++    +             Q+H  YII+Q  +G+ 
Sbjct: 419 PSPINEVNSTDDSSDGATVSEIQQNHPQPSDKPKRRVPYMEVVGQVHGTYIIAQNDEGMY 478

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQHAA ER+ +E  R         +Q+LL P   +  + E  +I +H + L   GI  
Sbjct: 479 LIDQHAAQERIKYEYYRDKIGEVNNENQSLLIPLTFNFTKDEQLIIEQHLDPLREAGIFL 538

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E FG +   +   P    ++N+ ++++D+I+ +I       +    E     M+C  SI+
Sbjct: 539 EPFGGHDYIVDSYPVWFPQENVEEMIKDMIEYVIRHKKVD-IAKFREEAAIMMSCKRSIK 597

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   ++  EM  L+ ++ +  +   C HGRP  I     ++E+LF R
Sbjct: 598 ANHYLKPNEMADLIDQLGEMEDPFTCPHGRPVIINFSNYELERLFKR 644


>gi|253701877|ref|YP_003023066.1| DNA mismatch repair protein [Geobacter sp. M21]
 gi|259509935|sp|C6E4L2|MUTL_GEOSM RecName: Full=DNA mismatch repair protein mutL
 gi|251776727|gb|ACT19308.1| DNA mismatch repair protein MutL [Geobacter sp. M21]
          Length = 650

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 198/650 (30%), Positives = 331/650 (50%), Gaps = 61/650 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E + N+IAAGE++ERP+   KEL+EN+LDA S  V   I  GG+   +++D G 
Sbjct: 4   KIRILPENLTNKIAAGEVVERPASVAKELVENALDAGSKEVVVEIESGGRRLIKVSDTGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ ++  +A++RH TSKI+  +D  ++ T GFRGEALPS+ +VS LT+ +R   +  G 
Sbjct: 64  GMSRDDALLALERHATSKIATDEDLFSLCTLGFRGEALPSVASVSRLTISTRTSDSVEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G +I  V+   M  GT++ VR+LFF  PARL F+KS + E   + +++ R+AI+ 
Sbjct: 124 EIYAEGGRIKEVKECGMAVGTVISVRNLFFNTPARLKFMKSAETEGGHVGELLTRLAISR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT+         + F++ + +  ER++ ++G    +    ++ +   + + G    
Sbjct: 184 PEVRFTYKNDGK----VMFRALDADLKERVATMLGRSISSFLYPVSYQEGGLKVSGLVAA 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R   +  Y +INGR ++DK +   I  AY   +  GRYPVV + ++I P +VDVNV
Sbjct: 240 PECSRSAGSHLYTYINGRFIKDKVVQHAILQAYRNFLERGRYPVVAVFIDIAPGEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------------KMISSFHQ 347
           HP K  +RFR    + + I ++++  + +      S ++             +  SS   
Sbjct: 300 HPTKHEVRFREQGRVHDAIQKAVESVLKETPWLKRSAVAAASRPAEKGGGALRPFSSMEA 359

Query: 348 DNAPKTHLPKYATSLTNTQE---------------------------------------- 367
             A     P+   +LT                                            
Sbjct: 360 SQAALPVTPQPRPALTPGHPDPPPQAQLQQPLVSESRVAEVRELLVNFQPRPQPPLRPQY 419

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE---ATHYQLGIACAQIHQNYIISQTTD 424
           +  +     S    + +     SE     ++S+   A ++       Q + +YI+ Q   
Sbjct: 420 RGSVAPREGSPYAPIAAAPVPASEPQSAAQDSDHVAAGYFSSLGVIGQFNASYILCQRGT 479

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            L+++DQHAAHER+ FEK++  F   ++ SQ LL PE ++    E A++ EH  +L RLG
Sbjct: 480 DLILIDQHAAHERVAFEKLKGQFAGREVDSQGLLFPETMEFSFRESAVLREHQAELARLG 539

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
            + E FG N   ++ +P +LS       +RDI++E+   S +    D  E++LA +AC+ 
Sbjct: 540 FEFEEFGGNTWLLKGVPQVLSATRYVDTIRDILEELGSLSRSRAFSDIQEDLLARIACHS 599

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +R  R +  +E+  L ++M++   SS C HGRP    L L+++EK+F R
Sbjct: 600 VVRGKRTLSPVEIAALFKQMDETDFSSNCPHGRPVMQTLTLAEVEKMFKR 649


>gi|84501416|ref|ZP_00999621.1| DNA mismatch repair protein [Oceanicola batsensis HTCC2597]
 gi|84390707|gb|EAQ03195.1| DNA mismatch repair protein [Oceanicola batsensis HTCC2597]
          Length = 597

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/596 (40%), Positives = 369/596 (61%), Gaps = 23/596 (3%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           ERP+ A+KEL+EN+LDA + R+E  +A GGKS  ++ D+G G+ +E +P+A+ RH TSKI
Sbjct: 2   ERPASAVKELVENALDAGARRIEITLAEGGKSLIRVKDDGCGIPAEALPLALARHATSKI 61

Query: 81  S-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
              D  NIHTFGFRGEALPS+GAV  L + +R     T A+IA+SG ++  VRP A++ G
Sbjct: 62  DGSDLLNIHTFGFRGEALPSLGAVGRLRITTRVAGA-TAAEIAVSGSRMGEVRPAALSGG 120

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT---FSTIKSNRYKM 196
           T+VE+RDLFF  PARL FL++++ ET  +TD+++R+A+A P V F     S     R   
Sbjct: 121 TVVELRDLFFATPARLKFLRTDRAETQAVTDIVKRLAMAEPYVGFVLRDVSGGGEGRVTF 180

Query: 197 NFQSTNGNFPE----RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
                +G+  +    R++ V+G +F  NA+ ++ +   + + GY  +PT++RG A   ++
Sbjct: 181 RADPESGDMFDALHGRLAAVLGREFAENALRIDAEREGLHMTGYAALPTYSRGAAVAQFL 240

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
           F+NGR V+DK +   +R AY + +   R+P   L ++ DP  VDVNVHPAKS +RFR+P 
Sbjct: 241 FVNGRPVRDKLLTGALRAAYMDVLSRDRHPAAALFIDCDPMLVDVNVHPAKSEVRFRDPG 300

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
           + R  ++  ++ A+ + G   S+ ++   + +   + AP   + +        +   +L 
Sbjct: 301 LARGLVVSGLRHALAEAGHRASTTVAGATLGAMRPEPAPAGRVYQMDRPSGPARAMAYLG 360

Query: 373 E--------------NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           +              +R        +      E   P    E   + LG A AQ+H+NYI
Sbjct: 361 QGPACPDPGVGGVVQDREPDGFDGFAAPSARYEPAAPGPAPELEGHPLGAARAQVHENYI 420

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           ++QT  G+VIVDQHAAHERL++EK++    +  + +Q LL PEI++L  G+CA + E   
Sbjct: 421 VAQTERGMVIVDQHAAHERLVYEKLKAQTAARGVPAQALLIPEIVELSAGDCARLTEAAG 480

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L  LG+  E FG +A+A+RE PAIL + +   L+ DI+DE+ D   + TL+ RI+ IL+
Sbjct: 481 ELGALGLTVEPFGGSAVAVRETPAILGEVDARALILDILDELTDGDDSTTLRARIDAILS 540

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            MAC+GS+RSGR+M+  EMN LLREME  P S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 541 RMACHGSVRSGRRMRIEEMNALLREMEATPMSGQCNHGRPTYVELKLADIERLFGR 596


>gi|125625245|ref|YP_001033728.1| DNA mismatch repair protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166232095|sp|A2RP08|MUTL_LACLM RecName: Full=DNA mismatch repair protein mutL
 gi|124494053|emb|CAL99053.1| DNA mismatch repair protein mutL [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300072055|gb|ADJ61455.1| DNA mismatch repair protein [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 656

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 196/642 (30%), Positives = 324/642 (50%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++ DNG 
Sbjct: 3   KIIELNEALANQIAAGEVVERPASVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   Q   G 
Sbjct: 63  GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSNAQEEAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 123 KLIAKGGTIETLEPLAKRLGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        E+N    +  L GY  +
Sbjct: 183 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMREINGSDLDFELTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  VL ++IDP+  DVNV
Sbjct: 240 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAVLSIKIDPKLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I + +++  +   ++ + +  +      + +T LP   
Sbjct: 300 HPTKQEVRLSKERELMTLISKAIDETLSEGVLIPEALENLQGRAKEKGTVSVQTELPLQN 359

Query: 360 TSL--TNTQEKLFLQE------NRLSTNDLLPSDDPTYSEDN------------------ 393
             L   N ++  F++E      N+   +D L   + T    N                  
Sbjct: 360 NPLYYDNVRQDFFVREEAIFEINKNDNSDSLTEQNSTDYTVNQPETGSVSEKITDRTVES 419

Query: 394 --------------------DPVEE-SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                               D +E+ S+ + +      AQ+H  Y++ Q+ +GL +VDQH
Sbjct: 420 SNEFTDRTPKNSVSNFGVDFDNIEKLSQQSTFPQLEYLAQLHATYLLCQSKEGLYLVDQH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  +       +  Q LL P +  L + +  ++ E  + LH  G+  E +G 
Sbjct: 480 AAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLPKNDFIVLAEKKDLLHEAGVFLEEYGE 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +RE P  L +  I + + ++ID I+ SS  ++L+    ++ A +AC  SI++   +
Sbjct: 540 NQFILREHPIWLKETEIEKSINEMIDIIL-SSKEFSLKKYRHDLAAMVACKSSIKANHPL 598

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +     LLRE+    N   C HGRPT +     DI+K+F R
Sbjct: 599 DAESARALLRELSTCKNPYSCAHGRPTIVHFSGDDIQKMFRR 640


>gi|321315471|ref|YP_004207758.1| DNA mismatch repair protein [Bacillus subtilis BSn5]
 gi|320021745|gb|ADV96731.1| DNA mismatch repair protein [Bacillus subtilis BSn5]
          Length = 627

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/628 (29%), Positives = 312/628 (49%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA+S+ +E  I   G +  ++ DNG 
Sbjct: 3   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I S    +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 KLVLQGGNIISESRSSSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L+  S +  ++GY  +
Sbjct: 182 PEVSIRLRHHGK---NLLQTNGNGDVRHVLAAIYGTAVAKKMLPLHASSLDFEVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------- 350
           HP+K  +R    T + + I   I+    ++ +  S+ L KK   +   +           
Sbjct: 299 HPSKLEVRLSKETELHDLIRDGIKDVFKQQQLIPSAQLPKKSAPAIKNEQQFITFDEKPP 358

Query: 351 -----PKTHLPKYA------------------TSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                 K H P Y+                    L      +  QE  L  +D+      
Sbjct: 359 ERKVPEKAHAPSYSPMKLSSVVKEPVDAEEELPPLQFDAPPIVDQEQTLEVSDVSEEQLE 418

Query: 388 TYSEDNDPVEESEATHY-QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
           T+ ++    ++  A+    +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+ 
Sbjct: 419 TFEQECHEEQQQPASDRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREK 478

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +   Q ++ P        E  +I +H ++L  +G+  E FG N+  +R  PA   K
Sbjct: 479 VGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPK 538

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               +L+ +II +++DS     ++   E     M+C GSI++ R +++ E+  LL ++  
Sbjct: 539 GEEAELIEEIIQQVLDSKNID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRS 597

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   C HGRP  I     ++EK+F R
Sbjct: 598 TSDPFTCPHGRPIIIHHSTYEMEKMFKR 625


>gi|15674190|ref|NP_268365.1| DNA mismatch repair protein [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12725273|gb|AAK06306.1|AE006449_12 DNA mismatch repair protein MutL [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 695

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/642 (28%), Positives = 320/642 (49%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++ DNG 
Sbjct: 42  KIIELNEALANQIAAGEVVERPASVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGL 101

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   +  +G 
Sbjct: 102 GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSTAEEESGT 161

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 162 KLVAKGGNIETLEPLAKRVGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 221

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        ++     +  L GY  +
Sbjct: 222 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMRQIKGSDLDFELTGYVSL 278

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  +L ++IDP   DVNV
Sbjct: 279 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAILSIKIDPTLADVNV 338

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+++  +   ++ + +  +   +  + +T LP   
Sbjct: 339 HPTKQEVRLSKERELMALISKAIDEALSEGVLIPEALENLQGRAKEKESLSVQTELPLQN 398

Query: 360 TSL--TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE------------------- 398
             L   N ++  +++E      +   + + +  +  D   E                   
Sbjct: 399 NPLYYDNVRQDFYVREEATFKINKNQASNDSSEQTFDNFTENQLNTDAVSEKMTDRTVES 458

Query: 399 --------------------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                                     S+++ +      AQ+H  Y++ Q+ +GL +VDQH
Sbjct: 459 TTEITDNSLENTVSNFEIDFDNEAKISQSSTFPQLEYLAQLHATYLLCQSKEGLYLVDQH 518

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  +       +  Q LL P +  L + +  ++ E  + LH  G+  E +G 
Sbjct: 519 AAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLAKNDFIVLAEKKDLLHEAGVFLEEYGE 578

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +RE P  L +  I + + ++ID I+ SS  ++L+    ++ A +AC  SI++   +
Sbjct: 579 NQFILREHPIWLKETEIEKSINEMIDIIL-SSKEFSLKKYRHDLAAMVACKSSIKANHPL 637

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +     LL E+    N   C HGRPT +     DI+K+F R
Sbjct: 638 DAESARALLAELATCKNPYSCAHGRPTIVHFSGDDIQKMFRR 679


>gi|158520166|ref|YP_001528036.1| DNA mismatch repair protein MutL [Desulfococcus oleovorans Hxd3]
 gi|158508992|gb|ABW65959.1| DNA mismatch repair protein MutL [Desulfococcus oleovorans Hxd3]
          Length = 605

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 181/603 (30%), Positives = 291/603 (48%), Gaps = 14/603 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E + N+IAAGE++ERP+  +KEL+EN++DA +S +   I  GG+S  ++TDNG G
Sbjct: 4   IRILPEHLSNKIAAGEVVERPASVVKELVENAIDAGASAIFVEIQNGGRSLVRVTDNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  ++  + ++R+ TSKI+D+     I T GFRGEA+PSI +VS   L +RP   + G +
Sbjct: 64  MGKDDALLCLERYATSKIADEKSLFAISTLGFRGEAIPSIASVSEFVLTTRPADADAGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +SG  I+ V      PGT VEV  LFF  PAR  FLK+   ET  I D +   A+  P
Sbjct: 124 IRVSGGTITDVADTGAPPGTTVEVGRLFFNTPARRKFLKAVATETGHIADTLAAFALCRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F                   +  ERI+ V+G     +   ++   + +T+ G+T  P
Sbjct: 184 DIHFKLVQDGRTVKN---WPRTADPLERITDVLGSQTRGHMAPISCADDTVTISGWTSSP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R  + + ++F+NGR V+D+ +   +   Y   +  G +PV  + + I   +VDVNVH
Sbjct: 241 AVTRSTSQKIHLFVNGRIVKDRGLQYALFEGYRGRLVKGAFPVAAIFINIPFDRVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS-------FHQDNAPKT 353
           P K+ +RF +   +   +  ++  A         S   K    +                
Sbjct: 301 PTKNEVRFADQRRVYQALKTAVAGAWAINAAPPWSDGQKPSRPAPAFSLPGVRPAPKVSE 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--SEATHYQLGIACA 411
            + +YAT L          E        L  D      +     +       +       
Sbjct: 361 SVFQYATPLPLPSFANAGDEPPAPARPRLSGDAEPRPLETPVSSDGHQSFFRFSDLAVVG 420

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q+   YI+ Q    +V++DQHAAHER++FE ++Q   +  +  Q LL PE ++L     A
Sbjct: 421 QVFNTYIVCQADAQVVLIDQHAAHERILFEALKQRGQNRPLPGQNLLVPETVELTHKSAA 480

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            I    +    +G++ E FGP A  I+ +PA+L+   +  ++ +I ++  D+        
Sbjct: 481 AIEPLLDAFAAMGLEIEPFGPTAFVIKAVPAVLADTAVGPMVAEIAEKQADTGFAPDPDT 540

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
              ++L  MAC+ +IR+ +++   E+  LL  ++   N   C HGRPT I    S+IEK 
Sbjct: 541 LTNDVLHVMACHAAIRAHQRLSEAEIKALLARLDGCDNPRHCPHGRPTAIFWSTSEIEKA 600

Query: 592 FGR 594
           F R
Sbjct: 601 FKR 603


>gi|281492891|ref|YP_003354871.1| DNA mismatch repair protein MutL [Lactococcus lactis subsp. lactis
           KF147]
 gi|281376543|gb|ADA66029.1| DNA mismatch repair protein MutL [Lactococcus lactis subsp. lactis
           KF147]
          Length = 656

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 187/642 (29%), Positives = 322/642 (50%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++ DNG 
Sbjct: 3   KIIELNEALANQIAAGEVVERPASVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   +  +G 
Sbjct: 63  GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSTAEEESGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 123 KLIAKGGNIETLEPLAKRVGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        ++     +  L GY  I
Sbjct: 183 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMRQIKGSDLDFELTGYVSI 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  +L ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAILSIKIDPTLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+++  +   ++ + +  +   +  + +T LP   
Sbjct: 300 HPTKQEVRLSKERELMALISKAIDEALSEGVLIPEALENLQGRAKEKEALSVQTELPLQN 359

Query: 360 TSL--TNTQEKLFLQEN------------------------------------------- 374
             L   N ++  +++E                                            
Sbjct: 360 NPLYYDNVRQDFYVREEATFKINKNQPSNDSSEQTFDNFTENQLNTDAVNEKITDRTVES 419

Query: 375 --RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
              ++ N L  +      + ++  + S+++ +      AQ+H  Y++ Q+ +GL +VDQH
Sbjct: 420 TTEITDNSLENTVSNFEIDFDNEAKISQSSTFPQLEYLAQLHATYLLCQSKEGLYLVDQH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  +       +  Q LL P +  L + +  ++ E  + LH  G+  E +G 
Sbjct: 480 AAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLAKNDFIVLAEKKDLLHEAGVFLEEYGE 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +RE P  L +  I + + ++ID I+ SS  ++L+    ++ A +AC  SI++   +
Sbjct: 540 NQFILREHPIWLKETEIEKSINEMIDIIL-SSKEFSLKKYRHDLAAMVACKSSIKANHPL 598

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +     LL E+    N   C HGRPT +     DI+K+F R
Sbjct: 599 DAESARALLAELATCKNPYSCAHGRPTIVHFSGDDIQKMFRR 640


>gi|324995820|gb|EGC27731.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK678]
          Length = 648

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 183/635 (28%), Positives = 300/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 4   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEDAGLKSIQVTDNGE 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS   + +       G 
Sbjct: 64  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFIIETATEAGQHGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 124 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 184 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 241 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +    +   +T LP   
Sbjct: 301 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRANKPEQTSLPLKE 360

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTN-------------- 379
                                   +  S     E    +     T+              
Sbjct: 361 NRLYYDKEQNDFFLKPQVAEQQLSFEESAEPVHEATDEKAESQPTSVKFAERKLASYDQL 420

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 421 DQPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 481 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 541 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 599

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 634


>gi|327463453|gb|EGF09772.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK1057]
          Length = 673

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 188/635 (29%), Positives = 303/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 29  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 88

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 89  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 148

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 149 LLVAQGGEIEEHVPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 208

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + IS + G       VE++    +  + GY  +
Sbjct: 209 PEVAFTLISDGREMTR---TAGSGNLRQAISGIYGLATAKKMVEISASDLDFEVSGYVSL 265

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 266 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 325

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 326 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 385

Query: 360 TSLTNTQE------KLFLQENRLSTN---------------------------------- 379
             L   +E      K  + E +LS                                    
Sbjct: 386 NRLYYDKEQNDFFLKPQVAEQQLSFEESAGPVHEATNEKAEPQPTSVKFAERKLASYDQL 445

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 446 DHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 505

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 506 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 565

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 566 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 624

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 625 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 659


>gi|289595835|ref|YP_003482531.1| DNA mismatch repair protein MutL [Aciduliprofundum boonei T469]
 gi|289533622|gb|ADD07969.1| DNA mismatch repair protein MutL [Aciduliprofundum boonei T469]
          Length = 559

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 186/597 (31%), Positives = 313/597 (52%), Gaps = 43/597 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR L   I+ +IAAGE++ERP+  +KEL+ENS+DA ++++   + GGG    ++ D+
Sbjct: 1   MPEIRVLPPNIVEKIAAGEVVERPASVVKELVENSIDAGATKIAIHVEGGGTKRIRVVDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E+  +A++RH TSKI   +D + I T GFRGEALPSI AVS LT++++  ++  
Sbjct: 61  GCGMSEEDAILALKRHATSKIKSEEDLNRISTLGFRGEALPSIAAVSKLTIITKRKEDLV 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +I + G +I ++  +    GT V V DLF+  PAR  FLKSE+ E   I  ++ + AI
Sbjct: 121 GTKIHVEGGEIKNITSIGAPSGTSVLVEDLFYNTPARRKFLKSERSEFFQIYSIVEKYAI 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            Y  + F         + +       N   RI+++ G++  +  VE+ +  N + ++G  
Sbjct: 181 IYENIHFKLVHNGKEVFNLPP----SNLKARIARLWGKEIADAMVEIKKS-NRMKIKGLI 235

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R + N+  +F+NGR V+ + I   +   Y   +    YP+ +L ++++P ++DV
Sbjct: 236 AKPYQVRRDKNKLLIFVNGRYVKSRIIEDALVEGYGTLLFRDSYPIAILKIQVEPDEIDV 295

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK +++F++   I+  I   I  ++ K+    S +  ++                 
Sbjct: 296 NVHPAKLFVKFKDENRIKKEIANLIWNSLTKEENIPSKIGGRE----------------- 338

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
                    EK+ ++  +    D+         ED  PV               Q+   Y
Sbjct: 339 ------ERAEKIKIEREKQMVFDVEEPSKMRKIEDFIPV-----MRTLPMEILGQVDGTY 387

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II ++ +GLVIVDQHAAHER+ +E+  +D     I    LL P I++L   E   I+E  
Sbjct: 388 IILKSPEGLVIVDQHAAHERIRYERFLKDMKDRNIQ--KLLEPIILNLDYKEYQFILEQK 445

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             L   G   E FG N+I +R IP IL+K++    +R+I           ++ ++ + ++
Sbjct: 446 GSLRDYGFIIEDFGTNSIVVRGIPPILTKRDAEDAIREIAQL-----GPKSIDEKRDELI 500

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             ++C G+I++ +K+   EM +L+ ++ +  N   C HGR T IK+K  D+EK+F R
Sbjct: 501 KLISCKGAIKAHQKLSQFEMEKLIMDLLRCKNPYTCPHGRSTMIKIKNEDLEKMFKR 557


>gi|242242580|ref|ZP_04797025.1| DNA mismatch repair protein MutL [Staphylococcus epidermidis
           W23144]
 gi|242234007|gb|EES36319.1| DNA mismatch repair protein MutL [Staphylococcus epidermidis
           W23144]
          Length = 645

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 171/646 (26%), Positives = 310/646 (47%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGISAIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     KI   +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAEDGKIIHEKPAKAKKGTDIQVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++  +  +      K+   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PEIRISLVSDGK---KILSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDN----- 349
           HP K  +R      + + I+  I++A   K +   + L++     K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNRTPKKNKVLETFEQQKINFEK 358

Query: 350 ----------------------------------APKTHLPKYATSLTNTQEKLFLQENR 375
                                             +      + +  L N  +  +LQ  +
Sbjct: 359 KQSQIGETSAPYVHDQKDKNHDVESHRNNLDSTSSTNNESTEVSNELNNHIDDTYLQSQK 418

Query: 376 LSTNDLLPSDDPTYSEDNDP-------VEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
               D+       Y   N         V ++            Q+H  YII+Q  +G+ +
Sbjct: 419 EVLFDMEQDTSNEYEILNQQSKDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 479 IDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K    ++++D+I+ ++    +  ++   E+    M+C  SI++
Sbjct: 539 HFGGHDYIVNSYPVWFPKVEAEEIIKDMIELVLKH-KSVDVKKIREDAAIMMSCKKSIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 NHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 643


>gi|312277479|gb|ADQ62136.1| DNA mismatch repair protein mutL [Streptococcus thermophilus ND03]
          Length = 647

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 310/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKGGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------- 344
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+               
Sbjct: 300 HPTKQEVRISKEKELMALIKSAIAQSLREQDLIPDALENLAKSSTRGATRSVQTSLPLKQ 359

Query: 345 ------------------FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND------ 380
                               +D  P     + + SL   +++  +++ + S +D      
Sbjct: 360 TNLYYDSNRNDFFVTPETVQEDIKPLVSKSESSVSLVANKQQPTVKQAKRSADDSDSEHG 419

Query: 381 -LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            L   +        + +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 KLDYKNKSKLKRMLENLTNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E    L+++ I  E +G N   +RE
Sbjct: 480 YEYYREKIGVVDSSLQQLLVPYLFEFSGSDYISLQEKMPLLNQVCIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLVQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|55820157|ref|YP_138599.1| DNA mismatch repair protein [Streptococcus thermophilus LMG 18311]
 gi|55822045|ref|YP_140486.1| DNA mismatch repair protein [Streptococcus thermophilus CNRZ1066]
 gi|81559962|sp|Q5M1Y6|MUTL_STRT1 RecName: Full=DNA mismatch repair protein mutL
 gi|81561138|sp|Q5M6H7|MUTL_STRT2 RecName: Full=DNA mismatch repair protein mutL
 gi|55736142|gb|AAV59784.1| DNA mismatch repair protein [Streptococcus thermophilus LMG 18311]
 gi|55738030|gb|AAV61671.1| DNA mismatch repair protein [Streptococcus thermophilus CNRZ1066]
          Length = 647

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 310/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKGGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------- 344
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+               
Sbjct: 300 HPTKQEVRISKEKELMALIKSAIAQSLREQDLIPDALENLAKSSTRGATRSVQTSLPLKQ 359

Query: 345 ------------------FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND------ 380
                               +D  P     + + SL   +++  +++ + S +D      
Sbjct: 360 TNLYYDSSRNDFFVTPETVQEDIKPLVSKSESSVSLVANKQQPTVKQAKRSADDSDSEHG 419

Query: 381 -LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            L   +        + +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 KLDYKNKSKLKRMLENLTNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E    L+++ I  E +G N   +RE
Sbjct: 480 YEYYREKIGVVDSSLQQLLVPYLFEFSGSDYISLQEKMPLLNQVCIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLVQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|217970237|ref|YP_002355471.1| DNA mismatch repair protein MutL [Thauera sp. MZ1T]
 gi|217507564|gb|ACK54575.1| DNA mismatch repair protein MutL [Thauera sp. MZ1T]
          Length = 628

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 193/635 (30%), Positives = 328/635 (51%), Gaps = 50/635 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +LS+ ++NQIAAGE++ERP+  +KE++EN++DA +  +E  +  GG    ++ D+
Sbjct: 1   MPHIHRLSDLLVNQIAAGEVVERPASVLKEILENAVDAGARAIEVQLEQGGVRRIRVADD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+ +A++RH TSKI+  DD   + T GFRGEAL +I AV+   + SR    + 
Sbjct: 61  GCGIARDELALALERHATSKIATLDDLERVGTMGFRGEALAAIAAVARTGITSRAEGASH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +I           P A++ GT+V+V DL++  PAR  FLK+E  E     D+ RR+A+
Sbjct: 121 AWRIEAG----REPEPAALDQGTVVDVADLYYNTPARRKFLKTESTEFAHCDDMFRRVAL 176

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P +    +      +++           R++ ++G+DF+ +A E+   +  + L G+ 
Sbjct: 177 ARPDIGLQLAHNGRVIHRLPPSPPAA----RVAALMGDDFLQHAREVQADAGILRLAGFA 232

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P ++R + +  Y F+NGR V+DK +   +R AYA+ +   R+P  VL LE+DP  VDV
Sbjct: 233 SLPAYSRASRDAQYFFVNGRFVRDKLLAHAVREAYADILHGARHPAYVLFLELDPAGVDV 292

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------------- 341
           NVHPAK  +RFR    +  F+  ++++ + + G   ++ L                    
Sbjct: 293 NVHPAKIEVRFRESRAVHQFVFHAVRRTLAESGAGRAAELHAPAAIGVGAGPAASPASGT 352

Query: 342 --ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD-------------- 385
                F     P +         + +      ++ RL+      +               
Sbjct: 353 VPQGGFSSALPPLSVPTAAHHPASRSWPPADARQGRLAMESASRAYFDFAAGARDSGGAS 412

Query: 386 ------DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                 +        P E +      LG A  Q+H  YI++Q   GLV+VD HAAHER++
Sbjct: 413 LPDRPGEIQSGPRPAPTETATGEAPPLGYALGQLHGIYILAQNAAGLVLVDMHAAHERIL 472

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +EK++   +      Q LL P +  +   + A   E  E L  +G +    GP  + +R 
Sbjct: 473 YEKLKTVIDGRP-AVQRLLIPAVFSVGAKDMAAAEEGTEVLAGMGFEIAAAGPQELVVRS 531

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +PA+L+   + +L+R+++ E+ +   T  +  R   +LATMAC+G++R+ R++   EMN 
Sbjct: 532 VPALLASAPVAELVRELLQELREFPATEVVTARRNELLATMACHGAVRANRQLTLPEMNA 591

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LLR+ME    + QCNHGRPT+ +L L+++++ F R
Sbjct: 592 LLRDMEATERADQCNHGRPTWTQLSLAELDRFFMR 626


>gi|196247547|ref|ZP_03146249.1| DNA mismatch repair protein MutL [Geobacillus sp. G11MC16]
 gi|196212331|gb|EDY07088.1| DNA mismatch repair protein MutL [Geobacillus sp. G11MC16]
          Length = 645

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/646 (27%), Positives = 304/646 (47%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL +++ N+IAAGE++ERP+  +KEL+EN++DA S+ VE  +   G +  ++ DNG 
Sbjct: 3   RIHKLDDQLANKIAAGEVVERPASVVKELVENAIDAHSTAVEIELEEAGMTKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS + L++    +  G 
Sbjct: 63  GMEEEDCLLAFERHATSKIQDEHDLFRIRTLGFRGEALPSIASVSEVELVTST-GSGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  + +    A   GT + V +LFF  PARL ++K+   E     DV+ R+A+A+
Sbjct: 122 KLVLKGGALVARERAAGRKGTDITVSNLFFNTPARLKYMKTIHTELGHAADVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF           +   + +G+    ++ + G +     + +  +S + T++GY  +
Sbjct: 182 PDVSFRLRHHGK---TLLATNGSGDVRHVLAAIYGMETAKQMIPIEAESLDFTVRGYISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  ++  I   Y   +P+GRYP+V L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSLIVNGRYVRNIPLMKAIEAGYHTLLPIGRYPIVFLAIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKTHL 355
           HPAK  +RF     +   I  +I++A  ++ +  S     K + +  +      A + H 
Sbjct: 299 HPAKLEVRFSKEAELNELITATIRQAFRQRTLIPSVSADSKTVKAKAEQASWTFAHRVHE 358

Query: 356 PKYATS----------------------------------LTNTQEKLFLQENRLS---- 377
           P                                       ++   E   + E R      
Sbjct: 359 PPAQPDGKAGGTSDVTAAASLASEGSLSPLPAAAQADAPAVSEEAEASVVPERRTGVVND 418

Query: 378 ------TNDLLPSDDPTYSEDNDPVEESEAT---HYQLGIACAQIHQNYIISQTTDGLVI 428
                   D    ++PT +      +  E              Q+H  YI+++   GL +
Sbjct: 419 LPAAELKRDAEVEEEPTEACLPADEQAEEKRAVDRLPPLYPIGQLHGTYILAENEHGLYM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P   +    E   I    ++L R G+  E
Sbjct: 479 IDQHAAQERINYEYFREKLGEVTNEVQELLVPLTFEYPADEYERIAACRDELARCGVFLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FGP A  +R  P    K    +++ ++I+ ++ + T   ++   E     M+C  +I++
Sbjct: 539 PFGPRAFLVRSHPVWFPKGKEKEIIEEMIEHVLTAKTVD-IKQLREQAAIIMSCKRAIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +++ E+  LL  + +  +   C HGRP  +     +IEKLF R
Sbjct: 598 NQHLRTDEIFALLETLRQTTDPFTCPHGRPIIVHFSTYEIEKLFKR 643


>gi|319401415|gb|EFV89625.1| DNA mismatch repair protein mutL [Staphylococcus epidermidis
           FRI909]
          Length = 645

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 171/646 (26%), Positives = 308/646 (47%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGVSSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     KI   +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAEDGKIIHQKPAKAKKGTDIQVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK+     +       +   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PKIRIALVSDGK---TLLSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDN----- 349
           HP K  +R      + + I+  I++A   K +   + L++     K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNRTPKKNKVLETFEQQKINFEK 358

Query: 350 ----------------------------------APKTHLPKYATSLTNTQEKLFLQENR 375
                                             +      + +  L N  +  +LQ  +
Sbjct: 359 KQSQIGETSAPYVHDQKDKNHDVESHRNDLDSTSSTNNESTEVSNELHNHIDDSYLQSQK 418

Query: 376 LSTNDLLPSDDPTYSEDNDP-------VEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
               D+       Y   N         V ++            Q+H  YII+Q  +G+ +
Sbjct: 419 EVLFDMEQDTSNEYKTLNQQSNDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P      + E  +I ++ ++L ++G+  E
Sbjct: 479 IDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG +   +   P    K    ++++D+I+ ++    +  ++   E+    M+C  SI++
Sbjct: 539 HFGGHDYIVNSYPVWFPKVEAEEIIKDMIELVLKH-KSVDVKKIREDAAIMMSCKKSIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 NHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 643


>gi|323341471|ref|ZP_08081712.1| DNA mismatch repair protein HexB [Lactobacillus ruminis ATCC 25644]
 gi|323091082|gb|EFZ33713.1| DNA mismatch repair protein HexB [Lactobacillus ruminis ATCC 25644]
          Length = 639

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 175/627 (27%), Positives = 292/627 (46%), Gaps = 39/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +LS  + +QIAAGE++ERP+  +KEL+EN+LDA+++++       G    ++TD+G G
Sbjct: 4   IHELSAVLADQIAAGEVVERPASVVKELVENALDAKAAQITIETKEAGLEMIRVTDDGEG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++++  A +RH TSKI   +D   + T GFRGEALPSI +VS + LM+    + TG  
Sbjct: 64  IEADDVETAFKRHATSKITSREDLFRVVTLGFRGEALPSIASVSDVVLMTAHAGDETGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI S     +  GT + V DLFF  PARL +L S   E + ++D++ R+A+++ 
Sbjct: 124 IHIKGGKIVSNDASQLRNGTQITVSDLFFNTPARLKYLSSLATELSHVSDIVNRLALSHS 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F           +   + NGN  +  S + G       +  N K  +  + G    P
Sbjct: 184 DVAFVLKNNGK---TLLKTAGNGNQKQTFSAIYGVKAAAKMISFNAKDLDFEVDGMVSYP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   + INGR +++  +   +   Y   + +GR+P  V+ + +DP   DVNVH
Sbjct: 241 ELTRSNRNGISLLINGRYIRNFKLTKAVLNGYGSKLMVGRFPYAVINIRLDPLLCDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----LSKKMISSFHQDNAPKTHL 355
           P K  +R      +   I + I   ++++ +  ++V       +   S    D   K+  
Sbjct: 301 PTKQEVRISKEPQLEKLISEGIFARLSQENLIPNAVKNLNHSKRTGFSGEQTDLLEKSPK 360

Query: 356 PKYATSLTNTQE----------------------------KLFLQENRLSTNDLLPSDDP 387
            K   S   T                              +  L++  L   D       
Sbjct: 361 YKGPVSAEVTAALVGESLDDKLDGKQNVLAKDVRPIVISKRTDLEKAELKIWDQKYVQKK 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
           T  +D +   ES    +       Q+H  Y+ +++ DGL I+DQHAA ER  +E  R + 
Sbjct: 421 TSVKDQEISAESSQKRFPELRYIGQMHGTYLFAESEDGLYIIDQHAAQERCKYEYYRIEI 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +     Q LL P ++     +   I E+ + L  LGI+ E FG N   +R+ P    + 
Sbjct: 481 GNVSSNQQRLLVPIVLTYPTTDALKIEENLDKLADLGIELEDFGKNTYILRQHPTWFKQG 540

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
              +++R++ID  ++     T+    E     M+C  SI++   ++  +   LL+++   
Sbjct: 541 EEEEIVREMIDMFLNDDK-LTVAKFREKTAIMMSCKRSIKANHHLEEEQAKVLLKKLSTC 599

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            N   C HGRP  +     D+E +F R
Sbjct: 600 ENPFNCPHGRPVLVHFTSKDMEHMFKR 626


>gi|323350706|ref|ZP_08086367.1| DNA mismatch repair protein HexB [Streptococcus sanguinis VMC66]
 gi|322123126|gb|EFX94817.1| DNA mismatch repair protein HexB [Streptococcus sanguinis VMC66]
          Length = 672

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/635 (28%), Positives = 301/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 28  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKTIQVTDNGE 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 88  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 147

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 148 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 207

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 208 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 264

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 265 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 324

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 325 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 384

Query: 357 -------------------KYATSLTNTQEKLFLQENRLSTN------------------ 379
                              +   S   + E +    N  +                    
Sbjct: 385 NRLYYDKEQNDFFLKPQVAEQQLSFEESAEPIHEATNEKAEPQPTSVKFAERKPVSYDQL 444

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 445 DHPELDQVSLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 504

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 505 YEYYREKIGDVDNSQQQLLVPYIFEFPADDILRIKQRMELLEDAGIFLEEYGANQFILRE 564

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 565 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 623

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 624 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 658


>gi|325697264|gb|EGD39150.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK160]
          Length = 672

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/635 (28%), Positives = 301/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 28  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 88  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 147

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 148 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 207

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 208 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 264

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 265 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 324

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 325 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 384

Query: 357 -------------------KYATSLTNTQEKLFLQENRLSTN------------------ 379
                              +   S   + E +    N  +                    
Sbjct: 385 NRLYYDKEQNDFFLKPQVAEQQLSFEESAEPIHEATNEKAEPQPTSVKFAERKPVSYDQL 444

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 445 DHPELDQVSLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 504

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 505 YEYYREKIGDVDNSQQQLLVPYIFEFPADDILRIKQRIELLEDAGIFLEEYGANQFILRE 564

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 565 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 623

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 624 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 658


>gi|329115863|ref|ZP_08244580.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326906268|gb|EGE53182.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 658

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/646 (28%), Positives = 318/646 (49%), Gaps = 57/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G     ITDNG 
Sbjct: 3   KIVELPEVLANQIAAGEVIERPASVVKELVENAIDAKSSQITIEIEESGLKSITITDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++P+++ RH TSKI    D   I T GFRGEALPSI ++S LT+ S   + + G 
Sbjct: 63  GMSKEDLPLSLLRHATSKIKNQSDLFRIRTLGFRGEALPSIASISLLTIKSATAEADYGN 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+   G ++ S+ PV+   GT ++V +LFF  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 QLISKGGEVESIEPVSTPVGTKIKVENLFFNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S   +  + I+ + G +     VE++    +  + G+  +
Sbjct: 183 PEVAFTLICDGR---ELTKTSGTADLKQAIAGIYGINTAKKMVEISTADLDFEVSGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + + I  +I +++  + +   ++ +    ++ + +   +T LP  A
Sbjct: 300 HPTKQEVRISKERELMSLISSAISESLRLQDLIPDALENLAKSTTRNNNKFEQTSLPLQA 359

Query: 360 TSL------------TNTQEKLFLQENR-------------------------------- 375
             +             N +E+   Q  +                                
Sbjct: 360 NKIYYDKEKGDFFTVDNRKEEPSNQPGQSNIVDSGVKIGDQVPPLVEETSPTFSVKHASR 419

Query: 376 -------LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                   +  DL  S+    ++  + +E  E + +       Q+H  Y+ +Q   GL I
Sbjct: 420 TISDVDDANHPDLDLSNQKKLTKLIENLENEETSVFPELDYFGQMHGTYLFAQGNGGLFI 479

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+       + Q LL P + +    +   + E  + L+++GI  E
Sbjct: 480 IDQHAAQERVKYEYYREKIGQVDNSLQQLLVPYLFEFSGSDFINLQEKMDLLNQVGIYLE 539

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            +G N   +RE P  + +  I   + ++ D ++ ++   +++     +   M+C  SI++
Sbjct: 540 EYGQNTFILREHPIWMKENEIESGVYEMCDMLLLTNNV-SIKTYRAELAIMMSCKRSIKA 598

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +      +LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 599 NHSLDDYSARQLLLQLAQCKNPYNCPHGRPVLINFSKADMEKMFRR 644


>gi|227363259|ref|ZP_03847391.1| DNA mismatch repair protein [Lactobacillus reuteri MM2-3]
 gi|227071715|gb|EEI10006.1| DNA mismatch repair protein [Lactobacillus reuteri MM2-3]
 gi|290558719|gb|ADD37853.1| DNA mismatch repair protein HexB [Lactobacillus reuteri]
          Length = 668

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/653 (27%), Positives = 299/653 (45%), Gaps = 64/653 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L   + NQIAAGE+IERP+  +KEL+ENSLDA S RV+ ++   G    ++ D+G 
Sbjct: 3   KIHELDNILANQIAAGEVIERPASIVKELVENSLDAHSHRVDIIVENSGLDSVRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+I +A  RH TSKI+   D   + T GFRGEALPSI +V+ +TL +       G 
Sbjct: 63  GIAAEDISLAFHRHATSKINSRHDLFKVQTMGFRGEALPSIASVADVTLTTAQAGQEEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G K   V+P     GT ++V DLFF  PARL +LKS Q E   ITD+I R+A+A 
Sbjct: 123 MIHLRGGKELVVKPAGARQGTDIKVTDLFFNTPARLKYLKSPQTELTRITDIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+F+       ++   + N N  + ++ + G       +E++   ++  + G+  +
Sbjct: 183 PAVAFSFTHNGR---ELFRSAGNNNLQQVVAAIYGVQAGRKMLEISGADDDFKVSGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R +++  +   I   Y   + +GRYP+ V+ +++DP  VDVNV
Sbjct: 240 PELTRASRQYITITINHRYIRNFELTKAIIQGYESKLMVGRYPIAVINIDLDPVLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------------SS 335
           HPAK  +R      +   I ++I++ I  + +                          S 
Sbjct: 300 HPAKREVRLSKEQQLIKLIAETIRQRIAVENLIPDVDADQFIPNDDEVADLDRRLKEASP 359

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--------------ENRLSTNDL 381
           V     IS+        T +P          + L  +                 +   D 
Sbjct: 360 VYHAAPISAVPATEKAATEIPTPEADNPAHADALDSEIPAPIVIHHLEDLNTPAMQKFDE 419

Query: 382 LPSDDPTYSEDNDPV--------------------EESEATHYQLGIACAQIHQNYIISQ 421
              ++   +  + PV                    ++ +   +       Q+   ++++Q
Sbjct: 420 RYQNEGEVTPFSAPVPTMTKKPVKPANIELDVHDKQDQQQNRFPDLQYIGQLQGTFLLAQ 479

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             DGL IVDQHAA ER+ +E  RQ         Q  L P +++    +   I +H + L 
Sbjct: 480 AGDGLYIVDQHAAQERINYEYYRQKIGEVSADQQNFLVPLVLNYSTVDAMTINQHLDTLA 539

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            +G++ E FG N+  +R  P    +        ++ID +I +    T+++        M+
Sbjct: 540 AVGLELESFGQNSFILRSHPTWFKEGQEEDTAEEMIDWLIKNGK-LTVKEFRMKTAIMMS 598

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +I++   +   E   LL+ + +  N   C HGRP  +     D+EK+F R
Sbjct: 599 CKRAIKANHHLDEREAKALLKRLPQCENPFNCPHGRPVTVHFNDQDLEKMFKR 651


>gi|296330918|ref|ZP_06873393.1| DNA mismatch repair protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674436|ref|YP_003866108.1| DNA mismatch repair protein [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296151923|gb|EFG92797.1| DNA mismatch repair protein [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412680|gb|ADM37799.1| DNA mismatch repair protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 628

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/629 (28%), Positives = 311/629 (49%), Gaps = 41/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA+S+ +E  I   G +  ++ DNG 
Sbjct: 3   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I S    +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 KLVLQGGNIISESRSSSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L+  S +  ++GY  +
Sbjct: 182 PEVSIRLRHHGK---NLLQTNGNGDVRHVLAAIYGTAVAKKMLPLHVSSLDFEVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------- 350
           HP+K  +R    T + + I   I+    ++ +  S+ L K+   +   +           
Sbjct: 299 HPSKLEVRLSKETELHDLIRDGIKDVFKQQQLIPSAQLPKRSAPAIKNEQQFITFDEKPA 358

Query: 351 -----PKTHLPKYAT--------SLTNTQEKL----FLQENRLSTNDLLPSDDPTY---- 389
                 K   P Y+            NT+E+L    F     +  +  + + D +     
Sbjct: 359 ERKVPEKAPAPSYSPMKLSSVVKEPVNTEEELPSAQFDAPPIVDQDQSIEAPDVSEDQPG 418

Query: 390 ----SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                   +   E  +    +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+
Sbjct: 419 ALEQEHHQEEQPEPTSERVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFRE 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                +   Q ++ P        E  +I +H ++L  +G+  E FG N+  +R  PA   
Sbjct: 479 KVGEVEPEVQDMIVPLTFHYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFP 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           K    +L+ +II +++DS     ++   E     M+C GSI++ R +++ E+  LL ++ 
Sbjct: 539 KGEEAELIEEIIQQVLDSKNID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLR 597

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +   C HGRP  I     ++EK+F R
Sbjct: 598 STSDPFTCPHGRPIIIHHSTYEMEKMFKR 626


>gi|157692389|ref|YP_001486851.1| DNA mismatch repair protein [Bacillus pumilus SAFR-032]
 gi|167017336|sp|A8FDH4|MUTL_BACP2 RecName: Full=DNA mismatch repair protein mutL
 gi|157681147|gb|ABV62291.1| DNA mismatch repair protein MutL [Bacillus pumilus SAFR-032]
          Length = 633

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 186/634 (29%), Positives = 312/634 (49%), Gaps = 46/634 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS+ + N+IAAGE++ERP+  +KEL+EN++DA S+ VE  +   G S  ++ DNG 
Sbjct: 3   KIIQLSDDLSNKIAAGEVVERPASVVKELMENAIDASSTVVEIDVEEAGLSSIRMIDNGV 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+  +A QRH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GIDAEDCKLAFQRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEMKTST-GEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G KI S +  +   GT + V +LF+  PARL ++K+   E   I+DV+ R+A+A+
Sbjct: 122 HLVLQGGKIISEKKTSGRRGTEIVVTNLFYNTPARLKYMKTVHTELGNISDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       V L+ +S +  ++GY  +
Sbjct: 182 PEVSIRLRHQGK---VLLQTNGNGDVRHVLAAIYGTAVAKKMVPLHVQSLDFEVKGYISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR V+   ++  +   Y   +P+GR+P+  + +++DP  VDVNV
Sbjct: 239 PEVTRASRNYMSSVVNGRYVKHFPLVKAVHEGYHTLLPIGRHPITFIEMKMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------NAPK 352
           HP+K  +R      +   I Q I+    K+ +  S+ + KK      ++       +A K
Sbjct: 299 HPSKLEVRLSKEQELHELIKQGIKDVFQKQQLIPSASVPKKAPMPAIKNEQQSLTFDAKK 358

Query: 353 THLPKYATSLTNTQEKL---------------FLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            +  +  T L+   E L                +QE   +++ +   D P+     +   
Sbjct: 359 GNTNEMETPLSYEPEPLESVVYETNQMSTYGMPVQEMTGASSPVFREDAPSERVHKEESA 418

Query: 398 E-----------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                             SE     +     Q+H  YI++Q   GL I+DQHAA ER+ +
Sbjct: 419 ASLEYEESVLREDDAEAISENERVPVMYPIGQMHGTYILAQNERGLYIIDQHAAQERIKY 478

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E  R+     +   Q +L P      + +  +I EH E L ++G+  E FG  +  +R  
Sbjct: 479 EYYREKVGEIEQEVQEMLVPLTFHYSKNDMLIIEEHKEILTKVGVFLEPFGSGSYIVRSH 538

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P    K    +L+ +II++++       ++   E     M+C GSI++ R +++ E+  L
Sbjct: 539 PQWFPKGEEAELIEEIIEQVLVEKRVD-IKKLREEAAIMMSCKGSIKANRHLRNDEIKAL 597

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L E+ +  +   C HGRP  I     ++EK+F R
Sbjct: 598 LDELRQTKDPFTCPHGRPIIIHHSTYEMEKMFKR 631


>gi|328944744|gb|EGG38905.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK1087]
          Length = 688

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/635 (29%), Positives = 300/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 44  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 103

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 104 GIDYEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 163

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 164 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 223

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 224 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 280

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 281 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 340

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 341 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 400

Query: 357 ---------------------------KYATSLTNTQEKLFLQENRLSTN---------- 379
                                             NT EK   Q   +             
Sbjct: 401 NRLYYDKEQNDFFLKPQVAEQQLSFEESVGPVQANTDEKAEPQPTSVKFAERKPASYDQL 460

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +++ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 461 DHPELDQASLERAVDKLKQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 520

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 521 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 580

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 581 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 639

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 640 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 674


>gi|332365450|gb|EGJ43211.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK355]
          Length = 649

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 299/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 4   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKTIQVTDNGE 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 64  GIDHQDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 124 RLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 184 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ ++ ++IDP   DVNV
Sbjct: 241 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAIINIQIDPYLADVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HP K  +R      +   I Q+I  ++ ++ +   +                        
Sbjct: 301 HPTKQEVRISKERELMALISQAIVTSLKEQDLIPDALENLAKSTVKRVTKPEQITLPLKE 360

Query: 336 ---------------VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
                              +   SF +   P          L  +    F +    S + 
Sbjct: 361 NRLYYDKEQNDFFLKPQVAEQQLSFEESAEPGHEATDEKAELPQSTSVKFAERKPASYDQ 420

Query: 381 LLPS--DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L     D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 421 LDHPELDQASLERVVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +R
Sbjct: 481 KYEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 541 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 635


>gi|121611141|ref|YP_998948.1| DNA mismatch repair protein MutL [Verminephrobacter eiseniae
           EF01-2]
 gi|121555781|gb|ABM59930.1| DNA mismatch repair protein MutL [Verminephrobacter eiseniae
           EF01-2]
          Length = 687

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 210/672 (31%), Positives = 333/672 (49%), Gaps = 82/672 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L E++I+QIAAGE++ERP+  ++EL++N+LDA +++V   ++ GG     + D+G 
Sbjct: 17  PIRDLPEELISQIAAGEVVERPASVVRELLDNALDAGATQVTVRLSAGGVRLIAVEDDGS 76

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +A++RH TSKIS   D   + T GFRGEAL +I +VS L+L+SRP    +  
Sbjct: 77  GIAQDELAVALRRHATSKISSLSDLETVATMGFRGEALAAIASVSELSLLSRPAAQASAF 136

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 137 VLDARSGEL---RPAARSTGTTVEVKELFFSTPARRKFLKADATELAHCLESVRRHALAR 193

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN------FPERISQVIGEDFINNAVELNEKSNEITL 233
           P V F          +       G          R+S V+G DF+  +V L  +   +T+
Sbjct: 194 PDVGFAVWHDGKLVEQWRASFVPGQGDARDALARRLSDVLGADFVAQSVALQHRGGSVTV 253

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G+ G+P   R  A+  Y ++NGR V+DK I    R+AY + +   + PV VL LEIDP 
Sbjct: 254 TGHAGLPDAARARADHQYCYVNGRFVRDKVISHAARSAYEDVLHGHKQPVYVLYLEIDPA 313

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ------------------------------ 323
           +VDVNVHP K  +RFR+   +   +  +++                              
Sbjct: 314 RVDVNVHPTKIELRFRDSREVHQAVRHAVENALATPRAAALAAAEAGAAVTAAKQPQAHA 373

Query: 324 -------------------KAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTN 364
                              +A+            +    S      P+      A  L+ 
Sbjct: 374 WRAQSALRLEERGHHVADLQALWGPKKDPPPDSGQAHGQSSEPWAGPRLAQRAPAPPLSP 433

Query: 365 --------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV-EESEATH 403
                               +QE+     +     ++  S D    E   P+ +E +   
Sbjct: 434 AGTAARDIGTEAQRPTLPPGSQEQGHALPSGREGQEVARSLDQEGREAAWPLGQEGQEVA 493

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEI 462
           + LG A AQIH  YI+++   G+VIVD HAAHER+++E+++   +S  ++ SQ LL P  
Sbjct: 494 WPLGRAVAQIHGVYILAENAQGMVIVDMHAAHERIVYERLKAQLDSGARMASQPLLIPGT 553

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                 E A   E  E L  LG++   F P  +A+R +PA+L++ +  +L R ++ E+  
Sbjct: 554 FAATAEEVATAEESAEVLATLGLEVIPFSPKTLAVRAVPAVLAQGDAVELARSVLAELAA 613

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             T+  +Q     +L TMAC+G++R+ R +   EMN LLR+ME    S QCNHGRPT+ +
Sbjct: 614 HDTSTVVQRARNELLGTMACHGAVRANRHLTIDEMNALLRQMEATERSDQCNHGRPTWRQ 673

Query: 583 LKLSDIEKLFGR 594
           L + +++ LF R
Sbjct: 674 LSMKELDALFLR 685


>gi|138894827|ref|YP_001125280.1| DNA mismatch repair protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|166232089|sp|A4IMI1|MUTL_GEOTN RecName: Full=DNA mismatch repair protein mutL
 gi|134266340|gb|ABO66535.1| DNA mismatch repair protein MutL [Geobacillus thermodenitrificans
           NG80-2]
          Length = 645

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/646 (27%), Positives = 303/646 (46%), Gaps = 58/646 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL +++ N+IAAGE++ERP+  +KEL+EN++DA S+ VE  +   G +  ++ DNG 
Sbjct: 3   RIHKLDDQLANKIAAGEVVERPASVVKELVENAIDAHSTAVEIELEEAGMTKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A +RH TSKI D  D   I T GFRGEALPSI +VS + L++    +  G 
Sbjct: 63  GMEEEDCLLAFERHATSKIQDEHDLFRIRTLGFRGEALPSIASVSEVELVTST-GSGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  + +    A   GT + V +LFF  PARL ++K+   E     DV+ R+A+A+
Sbjct: 122 KLVLKGGALVARERAAGRKGTDITVSNLFFNTPARLKYMKTIHTELGHAADVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF           +   + +G+    ++ + G +     + +  +S + T++GY  +
Sbjct: 182 PDVSFRLRHHGK---TLLATNGSGDVRHVLAAIYGMETAKQMIPIEAESLDFTVRGYISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  ++  I   Y   +P+GRYP+V L +E+DP  VDVNV
Sbjct: 239 PEVTRASRNYMSLIVNGRYVRNIPLMKAIEAGYHTLLPIGRYPIVFLAIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD----NAPKTHL 355
           HPAK  +RF     +   I  +I++A  ++ +  S     K + +  +      A + H 
Sbjct: 299 HPAKLEVRFSKEAELNELITATIRQAFRQRTLIPSVSADSKTVKAKAEQASWTFAHRVHE 358

Query: 356 PKYATS----------------------------------LTNTQEKLFLQENRLS---- 377
           P                                       ++   E     E R      
Sbjct: 359 PPAQPDGKAEGTSDVTAAASLASEGSLSPLPAAAQADAPAVSEEAEASVFSERRTGVVND 418

Query: 378 ------TNDLLPSDDPTYSEDNDPVEESEAT---HYQLGIACAQIHQNYIISQTTDGLVI 428
                   D    ++PT +      +  E              Q+H  YI+++   GL +
Sbjct: 419 LPAAELKRDAEVEEEPTEACLPADEQAEEKRAVDRLPPLYPIGQLHGTYILAENEHGLYM 478

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAA ER+ +E  R+         Q LL P   +    E   I    ++L R G+  E
Sbjct: 479 IDQHAAQERINYEYFREKLGEVTNEVQELLVPLTFEYPADEYERIAACRDELARCGVFLE 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FGP A  +R  P    K    +++ ++I+ ++ + T   ++   E     M+C  +I++
Sbjct: 539 PFGPRAFLVRSHPVWFPKGKEKEIIEEMIEHVLTAKTVD-IKQLREQAAIVMSCKRAIKA 597

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +++ E+  LL  + +  +   C HGRP  +     +IEKLF R
Sbjct: 598 NQHLRTDEIFALLETLRQTTDPFTCPHGRPIIVHFSTYEIEKLFKR 643


>gi|223043270|ref|ZP_03613317.1| DNA mismatch repair protein MutL [Staphylococcus capitis SK14]
 gi|222443481|gb|EEE49579.1| DNA mismatch repair protein MutL [Staphylococcus capitis SK14]
          Length = 655

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 171/656 (26%), Positives = 315/656 (48%), Gaps = 68/656 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+S+ +   +   G S  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAKSTEINIEVEQSGISSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSK+   DD  +I T GFRGEAL SI +VS +TL +    N  G 
Sbjct: 63  GIEQDDLSLVFHRHATSKLDVDDDLFHIRTLGFRGEALASISSVSKVTLKTCT-DNENGF 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EVYAENGEIVNRKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +       +   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PDIRISLLSDGK---TLISTNGSGRTNEVMAEIYGMRVAKDLVHISGDTSDYHLEGFFAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFILNKAILEGYHTLLTIGRYPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDN----- 349
           HP K  +R      + + I++ I++A   + +   + L +     K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEDQLYDLIVEKIREAFKDRILIPQNDLDRTPKKNKVLKSFEQQKMDFEK 358

Query: 350 -------------APKTHLPKYATSLTNTQE------------KLFLQENRLSTNDLLPS 384
                         P ++   Y T+ +  +E                 E   +++++  S
Sbjct: 359 RNSEVTNDDLTTAHPSSNKDHYNTNDSEIREGINNYQDTNTTLSNHENEQGFTSHNIQRS 418

Query: 385 DDPTYSEDNDPV--------------------------EESEATHYQLGIACAQIHQNYI 418
           ++  YS+    +                           +             Q+H  YI
Sbjct: 419 EEDNYSQVQKDILNDMEDDYLLNTESTSNNEEDIKGTVSQDPKRRVPYMEVVGQVHGTYI 478

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I+Q  +G+ ++DQHAA ER+ +E  R          Q LL P      + E  +I ++ +
Sbjct: 479 IAQNENGMFMIDQHAAQERIKYEYFRDKIGEVSNDVQNLLIPLTFHFSKDEQMIIDQYID 538

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L ++GI  E FG +   +   P    K    ++++D+I+ ++++     ++   E+   
Sbjct: 539 ELDKVGIHLEHFGGHDYIVNSYPVWFPKAEAQEIIKDMIELVLENKKVD-VKKIREDAAI 597

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            M+C  SI++   +++ EM+ L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 MMSCKKSIKANHYLKNNEMSDLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 653


>gi|332365310|gb|EGJ43073.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK1059]
          Length = 689

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/636 (29%), Positives = 305/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 44  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 103

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 104 GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 163

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 164 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 223

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +G+  + I+ + G       VE++    +  + GY  +
Sbjct: 224 PEVAFTLISDGREMTR---TAGSGDLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 280

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 281 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 340

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 341 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 400

Query: 360 TSLTNTQE------KLFLQENRLSTNDLLPSDDPTYSEDNDP------------------ 395
             L   +E      K  + E +LS  +   +      E ++P                  
Sbjct: 401 NRLYYDKEQDDFFLKPHVSEQQLSFEESAETVHEAADEKSEPPQPTSVKFAERKPASYDQ 460

Query: 396 -----------------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                            +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 461 LDHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERV 520

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +R
Sbjct: 521 KYEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILR 580

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 581 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 639

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 640 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 675


>gi|324992651|gb|EGC24572.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK405]
 gi|327460054|gb|EGF06393.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK1]
 gi|327488644|gb|EGF20444.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK1058]
          Length = 688

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/635 (28%), Positives = 300/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 44  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEDAGLKSIQVTDNGE 103

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS   + +       G 
Sbjct: 104 GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFIIETATEAGQHGT 163

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 164 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 223

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 224 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 280

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 281 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 340

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +    +   +T LP   
Sbjct: 341 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRANKPEQTSLPLKE 400

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTN-------------- 379
                                   +  S     E    +     T+              
Sbjct: 401 NRLYYDKEQNDFFLKPQVAEQQLSFEESAEPVHEATDEKAESQPTSVKFAERKLASYDQL 460

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 461 DQPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 520

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 521 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILRE 580

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 581 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 639

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 640 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 674


>gi|331701279|ref|YP_004398238.1| DNA mismatch repair protein mutL [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128622|gb|AEB73175.1| DNA mismatch repair protein mutL [Lactobacillus buchneri NRRL
           B-30929]
          Length = 643

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 168/631 (26%), Positives = 297/631 (47%), Gaps = 45/631 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL   + NQIAAGE++ERP+  +KEL+ENS+DA+SS ++  +   G    ++ D+G G
Sbjct: 7   IHKLPTILSNQIAAGEVVERPASVVKELVENSIDAKSSEIDVTVENSGLKLIKVVDDGNG 66

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + S ++  A  RH TSKIS+  D   + T GFRGEALPSI +V+++ + +     + G +
Sbjct: 67  IDSSQVQTAFLRHATSKISEQRDLFRVRTLGFRGEALPSISSVANVRMKTST--GSIGTE 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G K+ + +      GT VEV  LF+  PARL +L S   E + I+D++ R+A+++P
Sbjct: 125 VEYKGGKLVTQKASESRKGTTVEVASLFYNTPARLKYLSSPNTELSKISDIVNRLALSHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F+F +      ++   S  G+  + +  + G   ++    +     +I + GY  +P
Sbjct: 185 EIAFSFISNGR---ELLRTSGRGDLRQVLGAIYGVKTVSKMAAIKGNDLDIKVSGYVSLP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N   + +NGR +++  +   +   Y   + +GR+P+ V+ ++ DP  +DVNVH
Sbjct: 242 ELTRSSRNYISLILNGRFIRNFPLTKAVIAGYGSKLMIGRFPIAVINIDADPALIDVNVH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV----------------------LS 338
           P K  +R  +  +I   I  +I   +  K +   +                        +
Sbjct: 302 PTKQEVRISDEPMIGKLIANAIYDMLRDKQLIPDATRDFKQPVQAAPRQFDVSTATQAQT 361

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE---------------NRLSTNDLLP 383
              + +      P    P+    +  T++ L   +                         
Sbjct: 362 NPPLFAVDTPTTPSISQPEVTPVVVKTRDDLASSQVAQFDDFLKNEPSGLPAFEGTQPKT 421

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
            D+   S   +  E    T +       QIH  Y++++T D + +VDQHAA ER+ +E  
Sbjct: 422 IDNHQPSAKPEQSELVVETGFPHLDYIGQIHGTYLVAETADNMYLVDQHAAQERINYEFY 481

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           R+         Q LL P ++D    +  +I +  + L +LGI  E FG N+  +RE P  
Sbjct: 482 RKQIGEVSDDQQKLLVPIVLDYSTSDFLMISDRLDLLDKLGIHLEPFGQNSFIVREHPMW 541

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
                    ++++ID I+ S    ++    E     M+C  +I++   +  ++   LL+ 
Sbjct: 542 FKAGQEEDTIKEMIDWIL-SDHKISVAAFREKTAIMMSCKRAIKANHHLDELQAKALLKR 600

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  N   C HGRP  +K    DIEK+F R
Sbjct: 601 LPECENPYNCPHGRPVLVKFTNEDIEKMFKR 631


>gi|148543761|ref|YP_001271131.1| DNA mismatch repair protein [Lactobacillus reuteri DSM 20016]
 gi|184153167|ref|YP_001841508.1| DNA mismatch repair protein [Lactobacillus reuteri JCM 1112]
 gi|325682133|ref|ZP_08161651.1| DNA mismatch repair protein HexB [Lactobacillus reuteri MM4-1A]
 gi|167017343|sp|A5VIX0|MUTL_LACRD RecName: Full=DNA mismatch repair protein mutL
 gi|229486324|sp|B2G6E6|MUTL_LACRJ RecName: Full=DNA mismatch repair protein mutL
 gi|148530795|gb|ABQ82794.1| DNA mismatch repair protein MutL [Lactobacillus reuteri DSM 20016]
 gi|183224511|dbj|BAG25028.1| DNA mismatch repair protein HexB [Lactobacillus reuteri JCM 1112]
 gi|324978777|gb|EGC15726.1| DNA mismatch repair protein HexB [Lactobacillus reuteri MM4-1A]
          Length = 668

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/653 (27%), Positives = 299/653 (45%), Gaps = 64/653 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L   + NQIAAGE+IERP+  +KEL+ENSLDA S RV+ ++   G    ++ D+G 
Sbjct: 3   KIHELDNILANQIAAGEVIERPASIVKELVENSLDAHSHRVDIIVENSGLDSVRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+I +A  RH TSKI+   D   + T GFRGEALPSI +V+ +TL +       G 
Sbjct: 63  GIAAEDISLAFHRHATSKINSRHDLFKVQTMGFRGEALPSIASVADVTLTTAQAGQEEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G K   V+P     GT ++V DLFF  PARL +LKS Q E   ITD+I R+A+A 
Sbjct: 123 MIHLRGGKELVVKPAGARQGTDIKVTDLFFNTPARLKYLKSPQTELTRITDIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+F+       ++   + N N  + ++ + G       +E++   ++  + G+  +
Sbjct: 183 PAVAFSFTHNGR---ELFRSAGNNNLQQVVAAIYGVQAGRKMLEISGADDDFKVSGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R +++  +   I   Y   + +GRYP+ V+ +++DP  VDVNV
Sbjct: 240 PELTRASRQYITITINHRYIRNFELTKAIIQGYESKLMVGRYPIAVINIDLDPVLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------------SS 335
           HPAK  +R      +   I ++I++ I  + +                          S 
Sbjct: 300 HPAKREVRLSKEQQLIKLIAETIRQRIAVENLIPDVDADQFIPNDDEVADLDRRLKEASP 359

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--------------ENRLSTNDL 381
           V     IS+        T +P          + L  +                 +   D 
Sbjct: 360 VYHAAPISAVPATEKAATEIPTPEADNPAHADALDSEIPAPIVIHHLEDLNTPAMQKFDE 419

Query: 382 LPSDDPTYSEDNDPV--------------------EESEATHYQLGIACAQIHQNYIISQ 421
              ++   +  + PV                    ++ +   +       Q+   ++++Q
Sbjct: 420 RYQNEGEVTPFSAPVPTMTKKPVKPANIELDVHDKQDQQQNRFPDLQYIGQLQGTFLLAQ 479

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             DGL IVDQHAA ER+ +E  RQ         Q  L P +++    +   I +H + L 
Sbjct: 480 AGDGLYIVDQHAAQERINYEYYRQKIGEVSADQQNFLVPLVLNYSTVDAMTINQHLDTLA 539

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            +G++ E FG N+  +R  P    +        ++ID +I +    T+++        M+
Sbjct: 540 AVGLELESFGQNSFILRSHPTWFKEGQEEDTAEEMIDWLIKNGK-LTVKEFRMKTAIMMS 598

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +I++   +   E   LL+ + +  N   C HGRP  +     D+EK+F R
Sbjct: 599 CKRAIKANHHLDEREAKALLKRLPQCENPFNCPHGRPVTVHFNDQDLEKMFKR 651


>gi|319946047|ref|ZP_08020296.1| DNA mismatch repair protein HexB [Streptococcus australis ATCC
           700641]
 gi|319747855|gb|EFW00100.1| DNA mismatch repair protein HexB [Streptococcus australis ATCC
           700641]
          Length = 649

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 182/637 (28%), Positives = 311/637 (48%), Gaps = 48/637 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++   I   G    QITDNG 
Sbjct: 3   QIIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIVVEIEEAGLKSIQITDNGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+ +A++RH TSKI    D   I T GFRGEALPSI +VS +T+++     + G 
Sbjct: 63  GIAHEEVELALRRHATSKIKSQADLFRIRTLGFRGEALPSIASVSVMTILTAQEGASHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I+S+ P     GT + V DLFF  PARL ++KS+Q E + I D++ R+++A+
Sbjct: 123 KLEAKGGEITSLEPATSPVGTKITVEDLFFNTPARLKYMKSQQAELSHIVDILNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         +    +  GN  + I+ V G       V +     +  + G+  +
Sbjct: 183 PEIAFTLINDGHEMTR---TAGTGNLRQAIAGVYGLATAKKMVAIETGDLDFEVSGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  A+ ++ +   ++ +    +    +   +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIVSALKEQDLIPDALENLAKSTLRRTEKPVQTSLPLKE 359

Query: 357 ---------------------KYATSLTNTQEKLFLQE--NRLSTNDLLPSDDPTYSEDN 393
                                + +  LT  Q  LF  E  N+ + +  +   +    + +
Sbjct: 360 NSLYYDRDKGDFFVRPEVAESQPSGELTPEQTVLFASEEGNQEAKSPAIKFAERKAPQYD 419

Query: 394 ----------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                           D +E  E + +       Q+H  Y+ +Q   GL I+DQHAA ER
Sbjct: 420 QLDHPELDLASLDKAYDKLEGEEHSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQER 479

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           + +E+ R+       + Q LL P I +    +   + +    L  +G+  E +G N + +
Sbjct: 480 VKYEEYRESIGDVDGSQQQLLVPYIFEFPADDLIRLQQRKHLLEEVGVYLEEYGANQLIL 539

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           RE P  + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +     
Sbjct: 540 REHPIWMKEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHTLDDYSA 598

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             L+ ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 RDLIYQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 635


>gi|116627019|ref|YP_819638.1| DNA mismatch repair protein [Streptococcus thermophilus LMD-9]
 gi|122268376|sp|Q03MY0|MUTL_STRTD RecName: Full=DNA mismatch repair protein mutL
 gi|116100296|gb|ABJ65442.1| DNA mismatch repair protein MutL [Streptococcus thermophilus LMD-9]
          Length = 647

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 179/635 (28%), Positives = 308/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 KLVAKGGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         ++   S  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLLNDGR---QLTQTSGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAIFDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+     + +T LP   
Sbjct: 300 HPTKQEVRISKEKELMALIKSAIAQSLREQDLIPDALENLAKSSTRGATRSVQTSLPLKQ 359

Query: 360 TSL----------------------------------TNTQEKLFLQENRLSTND----- 380
           T+L                                   N Q+    Q  R + +      
Sbjct: 360 TNLYYDSSRNDFFVTPETVQEDIKPLVSKSESSVSSVANKQQPTVKQAKRSADDSDSEHG 419

Query: 381 -LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            L   +        + +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 KLDYKNKSKLKRMLENLTNEETSTFPELEFFGQMHGTYLFAQGQGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P + +    +   + E    L+++ I  E +G N   +RE
Sbjct: 480 YEYYREKIGVVDSSLQQLLVPYLFEFSGSDYISLQEKMPLLNQVCIYLEPYGNNTFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIESAVYEMCDMLLLTNEV-SVKTYRAELAIMMSCKRSIKANHALDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLVQLAQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|301301379|ref|ZP_07207521.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300214788|gb|ADJ79204.1| DNA mismatch repair protein mutL [Lactobacillus salivarius CECT
           5713]
 gi|300851039|gb|EFK78781.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 659

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/649 (28%), Positives = 308/649 (47%), Gaps = 61/649 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE++ERP+  +KEL+ENS+DA + +++ +I   G    QI D+G 
Sbjct: 3   KIHELSEILANQIAAGEVVERPASVVKELVENSIDAGAKQIDIIIEDAGLKSIQIIDDGN 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++  A +RH TSKI D  D   +HT GFRGEALPSI +VS + + +       G 
Sbjct: 63  GIEAEDVETAFKRHATSKIIDRKDLFKVHTLGFRGEALPSIASVSDVVMETAVSG-RAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G ++      A   GT + V DLF+  PARL +LKS Q E + I+D++ R+A+++
Sbjct: 122 KIHIKGGEVLEKTLSASREGTTITVSDLFYNTPARLKYLKSVQTELSYISDIVNRLALSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+ + +       ++   + NGN  + I  + G       V+  + + +  + GYT +
Sbjct: 182 TDVALSLTNNGR---QLLQSAGNGNLQQTIGAIYGVQNARQMVKFEDANLDFKISGYTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  +   +   Y   +  GRYP+ VL +E+DP  VDVNV
Sbjct: 239 PKLTRASRNYISLLVNGRYVKNFQLTKAVIEGYGSKLMTGRYPITVLSIELDPTLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------QDN 349
           HP K  I+      +  FI ++I + I ++ +    + + K  +              + 
Sbjct: 299 HPTKQEIKISKEDELVTFIQKTIFERIGQENLIPDGLQNIKSKTKEKLDFEQLKVGLNEA 358

Query: 350 APKTHLPKYATSLTNT------------------------------------QEKLFLQE 373
           + +    ++ T +T+                                     ++K  L+ 
Sbjct: 359 SKQYQTKQHRTGITSEVTAALVGEKLTKDESQTQNNEKIKEETKVELSPIIIKDKQDLKS 418

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEES--------EATHYQLGIACAQIHQNYIISQTTDG 425
            R+   D         +E     EE+        +   +       Q+H  ++ ++  +G
Sbjct: 419 YRVKEWDEKYQSRNKETEVTSIAEENRSVDDERKDTQRFPTLRYIGQMHGTFLFAEGEEG 478

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L IVDQHAA ER+ +E  R++      T Q LL P ++     +  +I E+ + L  LGI
Sbjct: 479 LYIVDQHAAQERVKYEYYREEIGKVSPTQQNLLVPIVLTYPTTDALIIDENMDKLKELGI 538

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FG N   IRE P    +     ++R++ID  +      ++    E     M+C  S
Sbjct: 539 YLEDFGQNTYIIREHPTWFKEGQEESIIREMIDYFL-KDRKLSIAKFREKTAIMMSCKRS 597

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I++   +   +   +L +++   N   C HGRP  +KL   D+E +F R
Sbjct: 598 IKANHHLDDKQAKSILEQLKTCENPFNCPHGRPVLVKLSNKDLEHMFKR 646


>gi|254168392|ref|ZP_04875237.1| DNA mismatch repair protein MutL [Aciduliprofundum boonei T469]
 gi|197622673|gb|EDY35243.1| DNA mismatch repair protein MutL [Aciduliprofundum boonei T469]
          Length = 574

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 185/594 (31%), Positives = 312/594 (52%), Gaps = 42/594 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   I+ +IAAGE++ERP+  +KEL+ENS+DA ++++   + GGG    ++ D+G G
Sbjct: 19  IRVLPPNIVEKIAAGEVVERPASVVKELVENSIDAGATKIAIHVEGGGTKRIRVVDDGCG 78

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E+  +A++RH TSKI   +D + I T GFRGEALPSI AVS LT++++  ++  G +
Sbjct: 79  MSEEDAILALKRHATSKIKSEEDLNRISTLGFRGEALPSIAAVSKLTIITKRKEDLVGTK 138

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G +I ++  +    GT V V DLF+  PAR  FLKSE+ E   I  ++ + AI Y 
Sbjct: 139 IHVEGGEIKNITSIGAPSGTSVLVEDLFYNTPARRKFLKSERSEFFQIYSIVEKYAIIYE 198

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F         + +       N   RI+++ G++  +  VE+ +  N + ++G    P
Sbjct: 199 NIHFKLVHNGKEVFNLPP----SNLKARIARLWGKEIADAMVEIKKS-NRMKIKGLIAKP 253

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N+  +F+NGR V+ + I   +   Y   +    YP+ +L ++++P ++DVNVH
Sbjct: 254 YQVRRDKNKLLIFVNGRYVKSRIIEDALVEGYGTLLFRDSYPIAILKIQVEPDEIDVNVH 313

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK +++F++   I+  I   I  ++ K+    S +  ++                    
Sbjct: 314 PAKLFVKFKDENRIKKEIANLIWNSLTKEENIPSKIGGRE-------------------- 353

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                 EK+ ++  +    D+         ED  PV               Q+   YII 
Sbjct: 354 ---ERAEKIKIEREKQMVFDVEEPSKMRKIEDFIPV-----MRTLPMEILGQVDGTYIIL 405

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           ++ +GLVIVDQHAAHER+ +E+  +D     I    LL P I++L   E   I+E    L
Sbjct: 406 KSPEGLVIVDQHAAHERIRYERFLKDMKDRNIQ--KLLEPIILNLDYKEYQFILEQKGSL 463

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G   E FG N+I +R IP IL+K++    +R+I           ++ ++ + ++  +
Sbjct: 464 RDYGFIIEDFGTNSIVVRGIPPILTKRDAEDAIREIAQL-----GPKSIDEKRDELIKLI 518

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C G+I++ +K+   EM +L+ ++ +  N   C HGR T IK+K  D+EK+F R
Sbjct: 519 SCKGAIKAHQKLSQFEMEKLIMDLLRCKNPYTCPHGRSTMIKIKNEDLEKMFKR 572


>gi|157151210|ref|YP_001451301.1| DNA mismatch repair protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189030419|sp|A8AZU1|MUTL_STRGC RecName: Full=DNA mismatch repair protein mutL
 gi|157076004|gb|ABV10687.1| DNA mismatch repair protein hexB [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 647

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/635 (28%), Positives = 304/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKTIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 63  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATENGQHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIAASLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 359

Query: 357 -------------------KYATSLTNTQEKLF---------------LQENRLSTNDLL 382
                              +   S   + E +                  E + ++ D L
Sbjct: 360 NRLYYDKERNDFFLKPQVAEQQISFEESAEPIHEATDEKAEPQPTSVKFAERKPASYDQL 419

Query: 383 PSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
              +   +      D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DHPELNQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  + L   GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMKLLEDAGIFLEEYGANQFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 540 HPIWFKEEEIEDGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHGLDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|239636984|ref|ZP_04677978.1| DNA mismatch repair protein MutL [Staphylococcus warneri L37603]
 gi|239597334|gb|EEQ79837.1| DNA mismatch repair protein MutL [Staphylococcus warneri L37603]
          Length = 649

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 177/650 (27%), Positives = 308/650 (47%), Gaps = 62/650 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+S+ +   +   G +  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAQSTEINIEVEQSGVASIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +   RH TSK+   DD  +I T GFRGEAL SI +VS +TL +    N  G 
Sbjct: 63  GIEADDLSLVFHRHATSKLDADDDLFHIRTLGFRGEALASISSVSKVTLRTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGEIINQKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +      K N    +G   E ++++ G     + V +   +++  L+GY   
Sbjct: 182 PDIRISLVSDGKTLLKTN---GSGKTNEVMAEIYGMKVAKDLVHITGDTSDYHLEGYVAR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAIVEGYHTLLTIGRYPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQ-----DN 349
           HP K  +R      + + I++ I++A   K +   + L       K+++SF Q     + 
Sbjct: 299 HPTKLEVRLSKEEQLYDLIVEKIREAFKDKILIPKNDLDHHPKKNKVLNSFEQQKLDFER 358

Query: 350 APKTHLPKYATSLTNTQEKLFL------------QENRLSTNDLLPSDDPTYSEDNDP-- 395
                  +  +S    QE L              Q N  + + L           +D   
Sbjct: 359 KQNEVQNRPQSSEDERQEDLSATTLDKVENQNISQVNEDNESTLFNDSQYIKRNHDDHYF 418

Query: 396 -------------------------------VEESEATHYQLGIACAQIHQNYIISQTTD 424
                                          V  S            Q+H  YII+Q  +
Sbjct: 419 NNQKDILNELDNQNETLEQEENQNENDIKGTVSASTRRRVPYMEVVGQVHGTYIIAQNEN 478

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           G+ ++DQHAA ER+ +E  R+         Q LL P      + E  +I ++ E+L R+G
Sbjct: 479 GMFMIDQHAAQERIKYEYFREKIGEVTNEVQNLLIPMTFHFSKDEQFIIDQYQEELDRVG 538

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           +  E FG +   +   P    K    ++++D+I+ ++++     ++   E+    M+C  
Sbjct: 539 VHLEHFGGHDYIVNSYPVWFPKAEAEEIIKDMIELVLENKKID-VKKMREDAAIMMSCKK 597

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 SIKANHYLKNNEMADLIDQLREMEDPFTCPHGRPIIINFSNYELEKLFKR 647


>gi|229915837|ref|YP_002884483.1| DNA mismatch repair protein MutL [Exiguobacterium sp. AT1b]
 gi|259509933|sp|C4L192|MUTL_EXISA RecName: Full=DNA mismatch repair protein mutL
 gi|229467266|gb|ACQ69038.1| DNA mismatch repair protein MutL [Exiguobacterium sp. AT1b]
          Length = 605

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 176/605 (29%), Positives = 297/605 (49%), Gaps = 18/605 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E++ N+IAAGE++ERP+  +KEL+EN++DA +++V+  +   G    ++ DNG G
Sbjct: 4   IRELPEQLANRIAAGEVVERPASVVKELVENAIDAGATKVDVDLQEAGIRLIKVRDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
              E+   A  RH TSKI D  D   I T GFRGEAL SI +VSH+ L S+    + G +
Sbjct: 64  FHEEDAARAFLRHATSKIRDEHDLFRIRTLGFRGEALASIASVSHVLLKSKRADED-GFE 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G  +    P A N GT + V  LFF  PARL +LK+   E   ITD + R+A+++P
Sbjct: 123 MTLEGGVVKETNPTATNVGTEIAVSQLFFNTPARLKYLKTSATELASITDTLNRLALSHP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ FT    +    ++   + NG+  + +  + G       V  + K+++ TL  +   P
Sbjct: 183 EIRFTVFHEEK---ELLRTNGNGDLKQVMLAIYGRQVAAQIVTASSKTSDYTLSAHLVRP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N     + +NGR++++  +  ++   Y   +P+GRYP+ VL +++DP  +DVNVH
Sbjct: 240 EVTRSNKQYVTLILNGRSIKNFALTQSVLEGYHTLLPIGRYPIAVLEVKMDPMLIDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQDNAPKTHLPKY 358
           P K  +R      +   I +++Q  + ++ +  S       K ++   Q     +  P+ 
Sbjct: 300 PTKREVRLSKEKELCQLIRETVQLTLREQRLIPSVKQEPKLKRVTPSEQSKLDFSMEPQP 359

Query: 359 ATSLTNTQEKLFLQE-------NRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIA 409
             + +        +E               L  +      + + VEES  ++        
Sbjct: 360 KQADSVEWNYPIPRERKETLTSPSQWNPAPLVHEPEAEMIEPEQVEESVRQSERLPALDV 419

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+H +YII    DG+ ++DQHAA ER+ +E   +     +   Q LL P  ++  + E
Sbjct: 420 IGQLHSSYIICGAEDGMYVMDQHAAQERIKYELFYEQLGRPEKEYQLLLIPLTLEFTQEE 479

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
              I E    L   GI  E FG N   +REIP    + ++   +RD+++  I    +  +
Sbjct: 480 TLAIEEVLPLLAEAGITLEPFGGNTFLVREIPTWYPQHDLEGTIRDLVEMAIQQ-RSIDI 538

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               E     MAC  SI++   +    M +L+ ++ +  +   C HGRP  +K    ++E
Sbjct: 539 AKYREEASILMACKRSIKANHPLNMEMMRQLIDDLSRTTSPFTCPHGRPILVKWSTYELE 598

Query: 590 KLFGR 594
           KLF R
Sbjct: 599 KLFKR 603


>gi|258423863|ref|ZP_05686748.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9635]
 gi|257845892|gb|EEV69921.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9635]
          Length = 669

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 170/670 (25%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------------------- 333
           HP K  +R      +   I+  IQ+A   + +                            
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 334 -------------SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
                        S   ++K   + +Q++        Y   +T T E L   +     ND
Sbjct: 359 RQNTEDNQEKTFSSEESNRKPFMAENQNDEIVIREDSYNPFVTKTSESLIADDESSGYND 418

Query: 381 LLPSDDPTYSEDNDPVEESEA------------------------------------THY 404
               D+  + +  + ++E +                                        
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  Q+H  YII+Q   G+ ++DQHAA ER+ +E  R          Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|332363705|gb|EGJ41485.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK49]
          Length = 698

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 302/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 53  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 112

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 113 GIAHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 172

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 173 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 232

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 233 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 289

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 290 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 349

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +    + + +T LP   
Sbjct: 350 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRANKSEQTSLPLKE 409

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                                   +  S     E    +     +  +  ++    S D 
Sbjct: 410 NRLYYDKEQNDFFLKPQVAEQQLSFEESAEPVHEATDEKAEPPQSTSVKFAERKPVSYDQ 469

Query: 394 ---------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                          D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 470 LDHPELDQVSLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERV 529

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   I +    L   GI  E +G N   +R
Sbjct: 530 KYEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMGLLEDAGIFLEEYGANQFILR 589

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 590 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 648

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 649 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 684


>gi|332360163|gb|EGJ37977.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK1056]
          Length = 647

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/635 (28%), Positives = 302/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 63  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATETGQHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLVAQGGEIEEHEPTSSPVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 359

Query: 360 TSLTNTQE------KLFLQENRLSTNDLLPSDDPTYSEDNDPVE---------------- 397
             L   +E      K  + E +LS  +          E ++P                  
Sbjct: 360 NRLYYDKERNDFFLKPEVAEQQLSFEESAKPVHQATDEKSEPQPTSVKFAERRPVSYDQL 419

Query: 398 ------------------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                             + E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DHPELDQASLERAVDKLGQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  + L   GI  E +G N   +RE
Sbjct: 480 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRMKLLEDAGIFLEEYGANQFILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 540 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|313890398|ref|ZP_07824029.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121241|gb|EFR44349.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 655

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/643 (28%), Positives = 309/643 (48%), Gaps = 54/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G     ITDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPASVVKELVENAIDAKSSQITIDIEESGLKSITITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++PM++ RH TSKI +  D   I T GFRGEALPSI ++S LT+ S   ++  G+
Sbjct: 63  GMSEQDLPMSILRHATSKIKNQGDLFRIRTLGFRGEALPSIASISELTIASATEESEHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G KI     ++M  GT + V +LF+  PARL ++KS Q E   I DV+ R+++ +
Sbjct: 123 QLFVRGGKIEGQEAISMPVGTRIRVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT  +      +    S +G   + I+ + G       +E+     +  + GY  +
Sbjct: 183 PEIAFTLISDGREMTR---TSGSGQLKQAIAGIYGLKTAKKMIEIANADLDFDVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I  +I +++  + +   ++ +    S+     A +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISTAIAESLKAQDLIPDALENLAKSSTRSLPKAEQTRLPLQT 359

Query: 357 ---------------------------------------------KYATSLTNTQEKLFL 371
                                                        + ++       +   
Sbjct: 360 RKLYYDPHENDFFVEKKDVSEAQTPIYSDSFDLDRPVKLAEEASVELSSPAVKHASRPDT 419

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
           +E     +DL   +     +  + +E  EA+ +       Q+H  Y+ +Q  DGL I+DQ
Sbjct: 420 EELVGDHSDLTFKNKHKLEQVVERLENEEASTFPELDYFGQMHGTYLFAQGVDGLFIIDQ 479

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAA ER+ +E  R+       + Q LL P + +    +   + E    L+ +GI  E +G
Sbjct: 480 HAAQERVKYEYYREKIGEVDSSLQQLLVPYLFEFSGSDFLTLQEKMSLLNDVGIYLEPYG 539

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
            +   +RE P  + +  I   + ++ D ++ +    +++     +   M+C  SI++   
Sbjct: 540 HHTFILREHPIWMKESEIEAGVYEMCDMLLLTQEV-SIKTYRAELAIMMSCKKSIKANHT 598

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +      +LL ++ +  N   C HGRP  I    SD+EK+F R
Sbjct: 599 LDDYSARQLLLQLAQCKNPYNCPHGRPVLIHFSKSDMEKMFRR 641


>gi|145220427|ref|YP_001131136.1| DNA mismatch repair protein MutL [Prosthecochloris vibrioformis DSM
           265]
 gi|189030405|sp|A4SGM5|MUTL_PROVI RecName: Full=DNA mismatch repair protein mutL
 gi|145206591|gb|ABP37634.1| DNA mismatch repair protein MutL [Chlorobium phaeovibrioides DSM
           265]
          Length = 614

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/615 (28%), Positives = 301/615 (48%), Gaps = 28/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + N+I+AGE+++RP   +KEL+EN++DA + R+  +I+  GK   +I DNG G
Sbjct: 4   IARLPESVANKISAGEVVQRPVSVVKELLENAIDAGADRISVIISDAGKELVRIVDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  ++  ++V+R  TSKI   +D  ++ + GFRGEAL SI +VSH  L +    +     
Sbjct: 64  MERDDALLSVERFATSKIRGVEDLEDLSSLGFRGEALASISSVSHFELRTAVEGSPLALS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
               G  +     V    GT + VR+LF+ +PAR  FLKS   E   I +++R   +A P
Sbjct: 124 FRYEGGVLVEEARVQGERGTSISVRNLFYNVPARRKFLKSNATEYGHIYELVRSFVLACP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++S+         +         +  ER+    G  F  + V + E+++ I+++G+ G P
Sbjct: 184 EISWQMVNDGEELFNFRTP----DLNERLDFFYGSGFAESLVPVTEENDYISIRGFIGRP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      Y FIN R VQ++ +   ++ AY E +   + P  +L  E+DP ++DVNVH
Sbjct: 240 ALQKRRRLDQYFFINRRLVQNRMLSQALQQAYGELLVERQAPFALLFFEMDPSRIDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKYA 359
           PAK  +RF +   +RN     I++A+     S      +   +S+ +   +P        
Sbjct: 300 PAKLEVRFEDERSVRNMFYPVIKRAVRSYDFSPDLASGELPPLSTRYPSPSPIAFQDVAE 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA------------------ 401
            ++T  +     +E   ST+    +    + E      E  A                  
Sbjct: 360 PAVTKGELYRNYREGAFSTSRPQDNLPEGFQEQLFSPPEPPAGFVGTASLAGSGGNEDEV 419

Query: 402 --THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                   +   Q+H  Y+I Q   GL+I+DQH AHER+++E+      ++   SQ LL 
Sbjct: 420 PLGDAVAEVKIWQLHNKYLICQIKTGLMIIDQHVAHERVLYERAVDVMETSVPNSQQLLF 479

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+ ++L   +  +  E  +DL+RLG     FG   + I  +P  +   +   +L+D+I E
Sbjct: 480 PQKVELRPWDWEIFEEIRDDLYRLGFNLSLFGSRTVMIEGVPQDVRPGSEVSILQDMIAE 539

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
             ++++   L+ R +N+  + +C  +I +G+K+   EM  L+  +    +   C HGRP 
Sbjct: 540 YSENASKLKLEKR-DNLAKSYSCRNAIMTGQKLSLQEMRSLIDSLFATRDPYCCPHGRPV 598

Query: 580 FIKLKLSDIEKLFGR 594
            IK+ L  ++ +FGR
Sbjct: 599 IIKMTLGQLDHMFGR 613


>gi|302342260|ref|YP_003806789.1| DNA mismatch repair protein MutL [Desulfarculus baarsii DSM 2075]
 gi|301638873|gb|ADK84195.1| DNA mismatch repair protein MutL [Desulfarculus baarsii DSM 2075]
          Length = 615

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 195/604 (32%), Positives = 317/604 (52%), Gaps = 14/604 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            +R L +++ NQIAAGE++ERP+  +KEL+EN+LDA + RV+  +   G+   ++ D+G 
Sbjct: 9   PVRLLPDEVANQIAAGEVVERPASVLKELVENALDAGARRVQIDVEAAGRGLIRVADDGH 68

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+++++ +AV+RH TSK+  +DD   + T GFRGEALPSI +VS L + +R   +  GA
Sbjct: 69  GMSADDLLLAVERHATSKLGQADDLIGVRTLGFRGEALPSIASVSRLRITTRQAADEVGA 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  I     +    G+ VE RDLFF IPAR  FL+ +  E   ++  + R+A+ +
Sbjct: 129 LLVIEGGVIRQSGQIGCRVGSTVEARDLFFNIPARRKFLRGQITEAGHLSAALTRLALGW 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F ++      + +       +   R++ ++G +   + V L+++   I L G    
Sbjct: 189 PGVAFRYAVGGKALHDLPAT---DDLTGRVAGLLGREAAAHMVGLDQRVGPIRLWGLAAT 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R  A+Q +VF+NGR V+DK +L  +  AY   +P  R PV VL LE+DP  VDVNV
Sbjct: 246 PAHSRSAADQVFVFVNGRFVRDKILLHAVGQAYHGLLPAERRPVAVLHLELDPELVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---------SSVLSKKMISSFHQDNA 350
           HPAK  +RFR    + + ++ ++++ + +   +          +S  +   +       A
Sbjct: 306 HPAKIEVRFRQQREVHDALVLALRRGLAQAAPARGVAPAFGGDASAPAPLAVEKAAWTPA 365

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
            +   P  +T   +   ++   E       L     P       P  E            
Sbjct: 366 SQEAPPPASTPAWSPAPRVPPAETPPRRPWLDDPPAPQPWAGPAPRLEPLFGPAGELSLI 425

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+H  YI+    DGLVI+DQHAAHERL FE+++       + SQ LL P +++L   E 
Sbjct: 426 GQLHGLYILCSAPDGLVIIDQHAAHERLTFERLKGQLARGAVASQGLLAPVVLELSPQEA 485

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A          RLG++   FG NA A+R +PA+ +  +  +L RD++  +  S       
Sbjct: 486 AWAALQAPIWARLGLEIAPFGGNAWAVRSLPALAAGADPGRLARDMLSTMSASGMPVDTP 545

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           + +E  L ++AC+GSIR G+++   EM+ L+R   + P    C HGRP F+ L   ++ +
Sbjct: 546 EFLEAALISLACHGSIRQGQQLSRPEMDELVRACAQLPPPVTCPHGRPVFLSLGRRELAR 605

Query: 591 LFGR 594
            F R
Sbjct: 606 CFKR 609


>gi|22538232|ref|NP_689083.1| DNA mismatch repair protein [Streptococcus agalactiae 2603V/R]
 gi|77414024|ref|ZP_00790195.1| DNA mismatch repair protein HexB [Streptococcus agalactiae 515]
 gi|22535144|gb|AAN00956.1|AE014286_19 DNA mismatch repair protein HexB [Streptococcus agalactiae 2603V/R]
 gi|77159906|gb|EAO71046.1| DNA mismatch repair protein HexB [Streptococcus agalactiae 515]
          Length = 659

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 304/645 (47%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + NQIAAGE++ERPS  +KEL+EN++DA SS++   +   G    QITDNG 
Sbjct: 5   KIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGE 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMTSE+  ++++RH TSKI    D   I T GFRGEALPSI ++S +T+ +   Q   G 
Sbjct: 65  GMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGT 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I     V+   GT + V +LFF  PARL ++KS Q E   I D++ R+++A+
Sbjct: 125 LLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 185 PEVAFTLINDGKEMTK---TSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSL 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 242 PELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      + + I  +I +++ +  +   ++ +    S+   D   +T      
Sbjct: 302 HPTKQEVRISKERELMSLISTAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQ 361

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                           T +    +   +
Sbjct: 362 PGLYYDRAKNDFFIGADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRD 421

Query: 375 RLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +  + + + S D   S+ +     + ++  E++ +       Q+H  Y+ +Q   GL I+
Sbjct: 422 QADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYII 481

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R+       + Q LL P + +    +   + E    L  +GI  E 
Sbjct: 482 DQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEP 541

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G N   +RE P  + ++ +   + ++ D ++ ++   +++     +   M+C  SI++ 
Sbjct: 542 YGNNTFILREHPIWMKEEEVESGIYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKAN 600

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 601 HTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKR 645


>gi|90962102|ref|YP_536018.1| DNA mismatch repair protein [Lactobacillus salivarius UCC118]
 gi|123391342|sp|Q1WT16|MUTL_LACS1 RecName: Full=DNA mismatch repair protein mutL
 gi|90821296|gb|ABD99935.1| DNA mismatch repair protein [Lactobacillus salivarius UCC118]
          Length = 659

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/649 (27%), Positives = 309/649 (47%), Gaps = 61/649 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE++ERP+  +KEL+ENS+DA + +++ +I   G    QI D+G 
Sbjct: 3   KIHELSEILANQIAAGEVVERPASVVKELVENSIDAGAKQIDIIIEDAGLKSIQIIDDGN 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++  A +RH TSKI D  D   +HT GFRGEALPSI +VS + + +       G 
Sbjct: 63  GIEAEDVETAFKRHATSKIIDRKDLFKVHTLGFRGEALPSIASVSDVVMETAVSG-RAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G ++      A   GT + V DLF+  PARL +LKS Q E + I+D++ R+A+++
Sbjct: 122 KIHIKGGEVLEKTLSASREGTTITVSDLFYNTPARLKYLKSVQTELSYISDIVNRLALSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+ + +       ++   + NGN  + I  + G       ++  + + +  + GYT +
Sbjct: 182 TDVALSLTNNGR---QLLQSAGNGNLQQTIGAIYGVQNARQMIKFEDANLDFKISGYTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  +   +   Y   +  GRYP+ VL +E+DP  VDVNV
Sbjct: 239 PKLTRASRNYISLLVNGRYVKNFQLTKAVIEGYGSKLMTGRYPITVLSIELDPTLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------QDN 349
           HP K  I+      +  FI ++I + I ++ +    + + K  +              + 
Sbjct: 299 HPTKQEIKISKEDELVTFIQKTIFERIGQENLIPDGLQNIKSKTKEKLDFEQLKVGLNEA 358

Query: 350 APKTHLPKYATSLTNT------------------------------------QEKLFLQE 373
           + +    ++ T +T+                                     ++K  L+ 
Sbjct: 359 SKQYQTKQHRTGITSEVTAALFGEKLTKDESQTQTNEKIKEETKVELSPIIIKDKQDLKS 418

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEES--------EATHYQLGIACAQIHQNYIISQTTDG 425
           +R+   D         +E     E++        +   +       Q+H  ++ ++  +G
Sbjct: 419 DRVKEWDEKYQSRNKETEVTSIAEKNGSVDDKRKDTPRFPTLRYIGQMHGTFLFAEGEEG 478

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L IVDQHAA ER+ +E  R++      T Q LL P ++     +  +I E+ + L  LGI
Sbjct: 479 LYIVDQHAAQERVKYEYYREEIGKVSPTQQNLLVPIVLTYPTTDALIIDENIDKLKELGI 538

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FG N   IR+ P    +     ++R++ID  +      ++    E     M+C  S
Sbjct: 539 YLEDFGQNTYIIRQHPTWFKEGQEESIIREMIDYFL-KDRKLSIAKFREKTAIMMSCKRS 597

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I++   +   +   +L +++   N   C HGRP  +KL   D+E +F R
Sbjct: 598 IKANHHLDDKQAKSILEQLKTCENPFNCPHGRPVLVKLSNKDLEHMFKR 646


>gi|25012090|ref|NP_736485.1| DNA mismatch repair protein [Streptococcus agalactiae NEM316]
 gi|81588689|sp|Q8E2R5|MUTL_STRA3 RecName: Full=DNA mismatch repair protein mutL
 gi|24413634|emb|CAD47711.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 657

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 304/645 (47%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + NQIAAGE++ERPS  +KEL+EN++DA SS++   +   G    QITDNG 
Sbjct: 3   KIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMTSE+  ++++RH TSKI    D   I T GFRGEALPSI ++S +T+ +   Q   G 
Sbjct: 63  GMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I     V+   GT + V +LFF  PARL ++KS Q E   I D++ R+++A+
Sbjct: 123 LLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEVAFTLINDGKEMTK---TSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      + + I  +I +++ +  +   ++ +    S+   D   +T      
Sbjct: 300 HPTKQEVRISKERELMSLISTAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQ 359

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                           T +    +   +
Sbjct: 360 PGLYYDRAKNDFFIGADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRD 419

Query: 375 RLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +  + + + S D   S+ +     + ++  E++ +       Q+H  Y+ +Q   GL I+
Sbjct: 420 QADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYII 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R+       + Q LL P + +    +   + E    L  +GI  E 
Sbjct: 480 DQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEP 539

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G N   +RE P  + ++ +   + ++ D ++ ++   +++     +   M+C  SI++ 
Sbjct: 540 YGNNTFILREHPIWMKEEEVESGIYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKAN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 HTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKR 643


>gi|253681623|ref|ZP_04862420.1| DNA mismatch repair protein MutL [Clostridium botulinum D str.
           1873]
 gi|253561335|gb|EES90787.1| DNA mismatch repair protein MutL [Clostridium botulinum D str.
           1873]
          Length = 637

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/638 (30%), Positives = 320/638 (50%), Gaps = 49/638 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LSE+  N+IAAGE++ERP+  +KEL+ENS+DA S  +   I   GK   +ITD+G 
Sbjct: 3   RINLLSEETSNKIAAGEVVERPASVVKELVENSIDANSQNITIEIKESGKEEIKITDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKIS  +D  +I+TFGFRGEALPSI AVS++ L +R    + G 
Sbjct: 63  GIHPEDVEKAFMPHGTSKISFIEDLYSINTFGFRGEALPSIAAVSNVLLKTRTKDCDFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I++SG K+  +     N GT++EV+DLFF +PAR  FLKS++ E  LI+++I R+A+A 
Sbjct: 123 EISVSGGKVKHLNDTGCNIGTVIEVKDLFFNVPAREKFLKSDKREAGLISNIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +SF +                 +  + I  + G++   N V   + S+ +++ GY G 
Sbjct: 183 HNISFKYYNNDKRSLITFAS---EDVKDTIRAIYGKNIYENIVGFEKHSDIVSVYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R ++   I + +  A+     + ++P  VL L+I P  +DVNV
Sbjct: 240 SEISRGSRNNQSIFVNKRYIKSGIITAAVENAFKSFSTVNKFPFFVLFLDIYPEFLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP-------- 351
           HP KS ++F++  II   +  ++  A++     + S+  ++   +      P        
Sbjct: 300 HPTKSEVKFQDERIIYKVVFDAVHSALSDSVRKSFSIEFEEEDPNPIPVQIPIDLKNKEI 359

Query: 352 ------------KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
                         +  K   SL N    +  +EN ++ N+   +      +    +  +
Sbjct: 360 KPVINDLEHSKSNLNTIKLKNSLNNDSNNIVNKENYININEKEYNKYHKEDKILKEINNN 419

Query: 400 EATHYQL-----------------------GIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
            +                                 Q ++ YI++QT D   ++DQHAAHE
Sbjct: 420 ISIDNTYKTTNNEKGKKQLDTLDKVDKFPELNIIGQFNKTYILAQTLDIFYMIDQHAAHE 479

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           +++FEK R    +  + SQ LLTP +I++   + A   E+       G   E FG N I+
Sbjct: 480 KILFEKFRNQIKNRDVISQILLTPVVIEMSAEDFAYYSENKNIFEESGFSLELFGDNTIS 539

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           IRE P +L K +      +I+D I +      +++   N++A++AC  +I++   +   E
Sbjct: 540 IREAPMLLGKVSTKNFFLEILDNIKNMGKG-NIEEVKHNMIASLACKAAIKANHTLSYDE 598

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M  L+ E+        C HGRPT I+L L +IEK F R
Sbjct: 599 MCSLVEELRYIEEPFNCPHGRPTIIRLPLKEIEKKFKR 636


>gi|196233474|ref|ZP_03132317.1| DNA mismatch repair protein MutL [Chthoniobacter flavus Ellin428]
 gi|196222470|gb|EDY16997.1| DNA mismatch repair protein MutL [Chthoniobacter flavus Ellin428]
          Length = 627

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 194/626 (30%), Positives = 322/626 (51%), Gaps = 36/626 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LSE++ +Q+AAGE++ERP+  +KEL+ENS+DA + ++E  I  GG S  ++ D+GF
Sbjct: 3   RIALLSEQVASQVAAGEVVERPASVVKELVENSIDAGAKKIEVAIRRGGISSIRVVDDGF 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  + ++RH TSKI   DD ++IHT GFRGEALPSI +VS   L +R P    G 
Sbjct: 63  GMDRDDALLCLERHATSKIRTGDDLASIHTLGFRGEALPSIASVSRFRLATREPAALAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++G KI SV+     PGT +EVR LF+ +PAR  FL++E  E++ +   +   AI +
Sbjct: 123 EVIVNGGKIESVKDCGDAPGTQIEVRSLFYNLPARRKFLRTENTESSHVEHQLHLQAIGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN-EKSNEITLQGYTG 238
           P++ F F   +   Y++   +      ERI  + G       +E+    ++ I ++G+ G
Sbjct: 183 PEIGFVFVNDERVVYQLPPTTH---LRERIRDLCGAALAAELLEVPEFAADNIRIRGFVG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
               +R +  Q  +F+NGR V++  +   +R  Y   +  G++PV  L +++DP  VDVN
Sbjct: 240 KAGVSRSSRAQQLIFLNGRAVENSTLNFALREGYHTALMKGQHPVTFLFIDMDPAAVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL--- 355
           VHPAK  +RFRN   IR  I+++I++ +       S+       +    + +  + L   
Sbjct: 300 VHPAKREVRFRNSAEIREAIVEAIRRTLETDRAEWSATFRAGTSAETANEVSGFSFLVSG 359

Query: 356 -------------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE----- 397
                        P +           F Q  R     + P    T +E +         
Sbjct: 360 SPAPPVPETPPLIPIHEQVALRRDWGAFPQPPRAPITPISPIPPITPTEVSPTSPTVPAA 419

Query: 398 ---------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                    + E    Q       + + Y++ +   GLV+VDQHAAHER++FE+M +   
Sbjct: 420 AEPIPPAFPDPETPSAQDFKILGVLGKLYVLMENATGLVLVDQHAAHERILFEEMLKRME 479

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           S  + +Q LL P  + +   +   I  H + L+R GI  E FG     I  +P  L    
Sbjct: 480 SQGVPTQRLLLPLTLQVSPRDADWITHHLDVLNRAGIGLEPFGAGTFKIDSLPTFLRGSE 539

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             QLLR+IID++ ++S   +     E+++A   C  ++++   ++  E+ RL++++    
Sbjct: 540 PSQLLREIIDDLRETSAQTSKLRLGEHMIAKTVCRHAVKANDVLREPELVRLIQDLLACD 599

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
               C HGRPT I++  S++EK FGR
Sbjct: 600 LPYCCPHGRPTMIQMSYSELEKKFGR 625


>gi|326407802|gb|ADZ64873.1| DNA mismatch repair protein MutL [Lactococcus lactis subsp. lactis
           CV56]
          Length = 656

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 186/642 (28%), Positives = 320/642 (49%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++ DNG 
Sbjct: 3   KIIELNEALANQIAAGEVVERPASVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   +  +G 
Sbjct: 63  GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSTAEEESGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 123 KLIAKGGNIETLEPLAKRVGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        ++     +  L GY  I
Sbjct: 183 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMRQIKGSDLDFELTGYVSI 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  +L ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAILSIKIDPTLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+++  +   ++ + +  +   +  + +T LP   
Sbjct: 300 HPTKQEVRLSKERELMALISKAIDEALSEGVLIPEALENLQGRAKEKETLSVQTELPLQN 359

Query: 360 TSL--TNTQEKLFLQEN------------------------------------------- 374
             L   N ++  +++E                                            
Sbjct: 360 NPLYYDNVRQDFYVREEATFKINKNQPSNDSSEQTFDNFTENQLNTDAVNEKITDRTVES 419

Query: 375 --RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
              ++ N L  +      + ++  + S+++ +      AQ+H  Y++ Q+ +GL +VDQH
Sbjct: 420 TTEITDNSLENTVSNFEIDFDNEAKISQSSTFPQLEYLAQLHATYLLCQSKEGLYLVDQH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA ER+ +E  +       +  Q LL P +  L + +  ++ E  + LH  G+  E +G 
Sbjct: 480 AAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLAKNDFIVLAEKKDLLHEAGVFLEEYGE 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           N   +RE P  L +  I + +  +ID I+ S   ++L+    ++ A +AC  SI++   +
Sbjct: 540 NQFILREHPIWLKETEIEKSINAMIDIILASKE-FSLKKYRHDLAAMVACKSSIKANHPL 598

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +     LL E+    N   C HGRPT +     DI+K+F R
Sbjct: 599 DAESARALLAELATCKNPYSCAHGRPTIVHFSGDDIQKMFRR 640


>gi|24380423|ref|NP_722378.1| DNA mismatch repair protein [Streptococcus mutans UA159]
 gi|81588215|sp|Q8DRX0|MUTL_STRMU RecName: Full=DNA mismatch repair protein mutL
 gi|24378448|gb|AAN59684.1|AE015030_14 putative mismatch repair protein HexB [Streptococcus mutans UA159]
          Length = 651

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 182/639 (28%), Positives = 303/639 (47%), Gaps = 50/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENAIDADSSQITIEIEESGLKKIQVTDNGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++ M+++RH TSKI    D   I T GFRGEALPSI ++S LTL +       G 
Sbjct: 63  GIEQADVIMSLRRHATSKIKKQSDLFRIRTLGFRGEALPSIASISRLTLKTATKGEIYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +  +G KI     ++   GT V V +LFF  PARL ++KS Q E   I DVI R+++A+
Sbjct: 123 LLIANGGKIEKEEAISTPIGTKVSVENLFFNTPARLKYMKSLQAELAHIIDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         ++   +  G+  + ++ + G       VE++    +  + GY  +
Sbjct: 183 PEIAFTLINDGR---ELTKTAGKGDLRQALAGIYGVTIAKKMVEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + N +  +I  ++ ++ +   ++ +    S+  +    +T LP   
Sbjct: 300 HPTKQEVRISKEKELMNLVSSAIADSLREQELIPDALENLAKTSTNKKQKFEQTQLPLKQ 359

Query: 360 TSL--TNTQEKLFLQENRLSTNDLLP---------------------------------- 383
           ++L    TQ   FL+E  +S                                        
Sbjct: 360 SNLYYDKTQNDFFLKETTVSEASSEFTVVDKAVNITDNVSGHSSVKYAQRQMRTCENKEH 419

Query: 384 --------SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                         S   + +E  E + +       Q+H  Y+ +Q   GL I+DQHAA 
Sbjct: 420 PSLTMTDKQQKRQLSRIVESLENEEKSTFPELEYFGQMHGTYLFAQGEGGLYIIDQHAAQ 479

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+ +E  R        + Q LL P + +    +   + E    L+ +GI  E +G N  
Sbjct: 480 ERVKYEYYRDKIGEVDNSLQQLLVPYLFEFPANDFMTLQEKMSILNEVGIHLENYGENTF 539

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +RE P  L +K I   + ++ D ++ ++   +++     +   M+C  SI++   +   
Sbjct: 540 ILREHPIWLQEKEIESAVYEMCDMLLLTNEV-SIKKYRAELAIMMSCKRSIKANHTLDDY 598

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 SARNLLIQLSQCKNPYNCPHGRPVLVNFTKADMEKMFRR 637


>gi|258541836|ref|YP_003187269.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632914|dbj|BAH98889.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635971|dbj|BAI01940.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639026|dbj|BAI04988.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642080|dbj|BAI08035.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645135|dbj|BAI11083.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648190|dbj|BAI14131.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651243|dbj|BAI17177.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654234|dbj|BAI20161.1| DNA mismatch repair protein MutL [Acetobacter pasteurianus IFO
           3283-12]
          Length = 643

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/625 (36%), Positives = 350/625 (56%), Gaps = 38/625 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L E I+N+IAAGE+IERP+ A+KEL+EN++DA + R+E  +AGGG     +TD+G GM
Sbjct: 22  RRLPEVIVNRIAAGEVIERPAAAVKELVENAIDAGARRLEVSLAGGGVDRIIVTDDGVGM 81

Query: 64  TSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +++++ +AV RHCTSK+ D+   +I T GFRGEALPSIGA + L + SRP   +   +I 
Sbjct: 82  SADDLALAVDRHCTSKLRDETLVHISTLGFRGEALPSIGAAARLCITSRPRGESGAWRIR 141

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+S V P A  PGT V V DLFF  PAR  FLKS +VE     +V+RR+A+A P+ 
Sbjct: 142 VEGGKVSPVEPAAGAPGTSVVVEDLFFATPARRKFLKSARVEGRHAENVVRRLALAVPQT 201

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           +F F   +   + +       +   R + ++     +  +E++ + + +TL G+   P+ 
Sbjct: 202 AFRFMLDERVLFDLPA----QDMATRSAALLDASEADGFLEISGERDGMTLSGFICPPSV 257

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R  AN  ++ +NGR V D  + + +R AY   I  GR+PVV L+L + P +VDVNVHPA
Sbjct: 258 HRSTANGQFMLVNGRPVVDPVLKTAVRVAYRRVIEPGRHPVVALMLTVPPDRVDVNVHPA 317

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINK----KGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           K+ +RF +   +R+ +I +IQ+A+       G+      + +    ++            
Sbjct: 318 KTELRFADEASVRSLVIGTIQRALEHGAGSVGVRPVLSSAPRQARIWYPPEKGAAPPVPA 377

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-----------------------P 395
                 T E +   E RL   D   +                                  
Sbjct: 378 PAFHAPTPEGVRFAEGRLQFGDAPAARTLPPVAMPSLHARWDAPAVGTPATGQAEPAYTA 437

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             +  A  + LG A AQ+   YI++   DG LV+VDQHAAHERL  E++R  F S  + +
Sbjct: 438 SAQPVAADHPLGAAIAQVLDTYILAVAADGSLVLVDQHAAHERLTHERLRAQFLSGHVQA 497

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P+++DL   +  L++     L +LG++ E FG +++ +R +PA+L   +   LLR
Sbjct: 498 QRLLVPDVVDLPRVQVDLLLARQPTLEKLGVEIEAFGGDSVLVRALPAMLRSSDAVSLLR 557

Query: 515 DIIDEIIDSSTTYT-----LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           D+ DE+             L  R++ ++A MAC+GSIR+GR++   EMN LLR+ME+ P 
Sbjct: 558 DLADELEADENGAPDEMAALDGRLDAVIARMACHGSIRAGRRLSVEEMNALLRQMEETPR 617

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           +  C+HGRPT++KL  +D+EKLFGR
Sbjct: 618 AGTCSHGRPTWLKLSKADLEKLFGR 642


>gi|225871418|ref|YP_002747365.1| DNA mismatch repair protein MutL [Streptococcus equi subsp. equi
           4047]
 gi|254766176|sp|C0MAS4|MUTL_STRE4 RecName: Full=DNA mismatch repair protein mutL
 gi|225700822|emb|CAW95527.1| DNA mismatch repair protein MutL [Streptococcus equi subsp. equi
           4047]
          Length = 660

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 176/648 (27%), Positives = 310/648 (47%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G    QITDNG 
Sbjct: 3   TIIELPEVLANQIAAGEVIERPASVVKELVENAIDAKSSQITVEIEESGLKMIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S LT+ +       G+
Sbjct: 63  GMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKLTIKTATADAEHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +  SG KI  +  V+   GT ++V +LF+  PARL ++KS Q E   + DV+ R+++A+
Sbjct: 123 ILVASGGKIEQLEAVSTPVGTKIKVENLFYNTPARLKYMKSLQAELAHVVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT  +      ++   S  G+  + ++ + G +     ++++    +  + G+  +
Sbjct: 183 PEIAFTLISDGK---QLTQTSGAGDLRQALAGIYGLNTAKKMIDISSADLDFEVGGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  IR      +   I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEIRISKERELMALISTAISESLREQDLIPDALENLARSSTRSFSKPEQTSLPLQP 359

Query: 360 TSL--TNTQEKLFLQENRLSTNDLL----------------------------------- 382
           + L     +   F +E  +S +                                      
Sbjct: 360 SQLYYDPQKNDFFTKETVVSEDSPQGFNHETLVDSGVKQVDNLQLAKTESEAAAPSVKYA 419

Query: 383 ----------------PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                             +    S+  D +E  E + +       Q+H  Y+ +Q  DGL
Sbjct: 420 SRPDPMLSDGEHPGLDVHNKQKLSQMLDRLENEEQSVFPELDYFGQMHGTYLFAQGRDGL 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 480 FIIDQHAAQERVKYEYYRDKIGEVDNSLQQLLVPYLFEFSGSDFINLQEKMSLLNEVGIY 539

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G +   +RE P  + +  I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 540 LEPYGNHTFILREHPIWMKEAEIESGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKRSI 598

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +      +LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 599 KANHSLDDYSARQLLLQLAQCKNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|258511467|ref|YP_003184901.1| DNA mismatch repair protein MutL [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478193|gb|ACV58512.1| DNA mismatch repair protein MutL [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 622

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 181/623 (29%), Positives = 312/623 (50%), Gaps = 39/623 (6%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
            + + +QIAAGE++ RP+  +KEL+ENSLDA ++R+E  +A GG +   + D+G GM+ E
Sbjct: 2   PKVMADQIAAGEVVARPASCVKELVENSLDAGATRIEVSLAEGGIACVTVVDDGEGMSPE 61

Query: 67  EIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
           +  +A  RH TSK+ +  D + I T GFRGEAL +I +V+ + L++R     +G  + + 
Sbjct: 62  DAVLAFHRHATSKVHEPRDLARIRTLGFRGEALAAIASVARVRLITRARGEESGVLVRVE 121

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           G +I    P+    GT +EVRDLFF  PARL +L+S Q E     +V++R ++A+P+V+F
Sbjct: 122 GGEIHPPEPIGAPFGTTMEVRDLFFNTPARLKYLRSAQTEQARSVEVVQRESLAHPEVAF 181

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
              T    R  +      G+  E  + + G       +E+   + +  L+GY G PT  R
Sbjct: 182 VCRTE---RQVLFQTPGRGDAREVWAALYGVGEARMLIEVRGTTGDYALRGYVGRPTQAR 238

Query: 245 GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKS 304
            +    Y+FINGR V++  +   +  AY E + +GRYPV  L LE+DP  VD NVHP K 
Sbjct: 239 SSRQHGYLFINGRPVRNPAVQQAVERAYGERLMVGRYPVYALYLEMDPALVDPNVHPQKW 298

Query: 305 YIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            +R      + + +  +++ A+          + TS+ L+  +  +  +++A  + + + 
Sbjct: 299 EVRLSEERDVCHLVESAVRAALDNAMLTAAPRVRTSAPLASPVPLNLPEESAGPSEMRQS 358

Query: 359 ATSLTNTQEKL---------------------------FLQENRLSTNDLLPSDDPTYSE 391
            +  T+ +E+                             ++E+  +  ++      + +E
Sbjct: 359 PSPATDPKERPRVLARSPSFGQGPGRTAAPREAWESALAVRESAAAQVEIEHGTRESQAE 418

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            +      E           Q  + YI+++  + L I+DQHAAHER+++E +   +    
Sbjct: 419 GDGRDVPQERPADWRLRPIGQALRMYILAEDGNDLYIIDQHAAHERVLYEDVLDAWQQGD 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           I    LLTP  + L       +M   E+L  LG + + FG + I +R IP      +   
Sbjct: 479 IQPMPLLTPLELSLTPSAFEEVMARREELLALGFEIDPFGVHTILVRTIPDSWQGLDYAA 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L+RD++D++       T +D +   LAT AC  +I++   +   EM  L R + +  +  
Sbjct: 539 LVRDVLDDLASMGPKATARDIMHR-LATRACKAAIKAHDSLTMPEMEALCRRLTRARDPY 597

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRP F+++   ++ K F R
Sbjct: 598 HCPHGRPIFLRMSERELAKSFRR 620


>gi|322386540|ref|ZP_08060167.1| DNA mismatch repair protein HexB [Streptococcus cristatus ATCC
           51100]
 gi|321269459|gb|EFX52392.1| DNA mismatch repair protein HexB [Streptococcus cristatus ATCC
           51100]
          Length = 648

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 187/636 (29%), Positives = 304/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 63  GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P + + GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLVAQGGEIEKHEPTSSSVGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 359

Query: 360 TSLTNTQE------KLFLQENRLSTNDLLPS----------------------------- 384
             L   +E      K  + E +LS  +L                                
Sbjct: 360 NRLYYDKEQNDFFLKPQVAEQQLSFEELAKPVHQATDEKAEPQPTSVKFAERKPVSYDQL 419

Query: 385 -----DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                D  +     D +E+ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DHPELDQASLERAVDKLEQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKI-TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           +E  R+          Q LL P I +    +   I +  E L   GI  E +G N   +R
Sbjct: 480 YEYYREKIGDVDNSQQQQLLVPYIFEFPADDMLRIKQRMELLEDAGIFLEEYGANQFILR 539

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 540 EHPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 598

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 DLLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 634


>gi|172087927|emb|CAQ35199.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
          Length = 669

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 171/670 (25%), Positives = 302/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------------------------- 333
           HP K  +R      +   I+  IQ+A   + +                            
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 334 ---SSVLSKKMISSFHQDNAPK----------THLPKYATSLTNTQEKLFLQENRLSTND 380
              +    +K  SS   +  P                Y   +T T E L   +     ND
Sbjct: 359 RQNTEDNQEKTFSSEESNRKPFMVENQNDEIVIREDSYNPFVTKTSESLIADDESSGYND 418

Query: 381 LLPSDDPTYSEDNDPVEESEA------------------------------------THY 404
               D+  + +  + ++E +                                        
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  Q+H  YII+Q   G+ ++DQHAA ER+ +E  R          Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|73662773|ref|YP_301554.1| DNA mismatch repair protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761519|sp|Q49X89|MUTL_STAS1 RecName: Full=DNA mismatch repair protein mutL
 gi|72495288|dbj|BAE18609.1| DNA mismatch repair protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 655

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 175/656 (26%), Positives = 310/656 (47%), Gaps = 68/656 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERP   +KEL+EN++DA+++ +   +   G +  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPGSVVKELLENAIDAQATEINIEVEQSGVASIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSK+   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIHIDDLGLVFHRHATSKLDADDDLFHIRTLGFRGEALASISSVAKVTLSTCT-DNEEGQ 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +   +I   +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 QIYVENGEILDQKPAKAKRGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +      K N    +G   E +S++ G     + V ++  +++  L+G+   
Sbjct: 182 PDIRISLISDGKTIMKTN---GSGRTNEVMSEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFLLNKAILEGYHTLLMIGRYPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQ---DNAP 351
           HP K  +R      + N I++ I++A   + +   + + K     K++  F Q   D   
Sbjct: 299 HPTKLEVRLSKEDQLFNLIVEKIREAFKDRILIPQNDMDKITKKNKVLDQFEQQKLDFEK 358

Query: 352 KTHLPKYATSLTNTQEK--------------------LFLQENRLSTNDLLPSDD----- 386
           K     ++  + + +E                     +  +EN  S +    SDD     
Sbjct: 359 KQQQENHSQPVNSHEEDEKNDDKAYHSSQTHYEPTDYILKEENNTSVSTSPNSDDDYTQT 418

Query: 387 ----------------------------PTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                                        + S+    V +  +          Q+H  YI
Sbjct: 419 QKSVLYDLENENQSEFINEADFDSDISNHSDSDIKGSVSKDPSRRVPYMEVVGQVHGTYI 478

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I+Q  +G+ ++DQHAA ER+ +E  R+         Q LL P        E  +I +H E
Sbjct: 479 IAQNENGMYMIDQHAAQERIKYEYFREKIGEVTNEIQNLLIPLTFHFSTDELMIINQHKE 538

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L ++G+  E FG N   +   P         ++++D+I+ +++      ++   E+   
Sbjct: 539 ELDKVGVHLEPFGGNDYIVDSYPVWFPTAEAEEIIKDMIEYVLEHKKV-NVKKIREDAAI 597

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            M+C  SI++   +++ EM  L+ ++ +  +   C HGRP  I     ++E+LF R
Sbjct: 598 MMSCKKSIKANHYLKNNEMADLVNQLRETEDPFTCPHGRPIIINFSNYELERLFKR 653


>gi|330686132|gb|EGG97752.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus epidermidis VCU121]
          Length = 649

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 311/650 (47%), Gaps = 62/650 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+S+ +   +   G +  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAQSTEINIEVEQSGVASIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +   RH TSK+   DD  +I T GFRGEAL SI +VS +TL +    N  G 
Sbjct: 63  GIEADDLSLVFHRHATSKLDADDDLFHIRTLGFRGEALASISSVSKVTLRTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGEIINQKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +      K N    +G   E ++++ G     + V +   +++  L+GY   
Sbjct: 182 PDIRISLVSDGKTLLKTN---GSGKTNEVMAEIYGMKVAKDLVHITGDTSDYHLEGYVAR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAIVEGYHTLLTIGRYPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------- 347
           HP K  +R      + + I++ I++A   K +   + L       K+++SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYDLIVEKIREAFKDKILIPKNDLDTHPKKNKVLNSFEQQKLDFER 358

Query: 348 ---DNAPKTHLPK-------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP-- 395
              ++  ++HL +         ++      +   Q N  + + L           ND   
Sbjct: 359 KQIEDPNRSHLSEDEKQDELSGSAFEKDNNQNISQVNEDNESTLFNDSQYIKRNHNDHYF 418

Query: 396 -------------------------------VEESEATHYQLGIACAQIHQNYIISQTTD 424
                                          V  S            Q+H  YII+Q  +
Sbjct: 419 NNQKDILNELDNQNETLEQEEDRNENDIKGAVSASTRRRVPYMEVVGQVHGTYIIAQNEN 478

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           G+ ++DQHAA ER+ +E  R+         Q LL P      + E  +I ++ E+L R+G
Sbjct: 479 GMFMIDQHAAQERIKYEYFREKIGEVTNEVQNLLIPMTFHFSKDEQFIIDQYQEELDRVG 538

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           +  E FG +   +   P    K    ++++D+I+ ++++     ++   E+    M+C  
Sbjct: 539 VHLEHFGGHDYIVNSYPVWFPKAEAEEIIKDMIELVLENKKID-VKKMREDAAIMMSCKK 597

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 SIKANHYLKNNEMADLIDQLREMEDPFTCPHGRPIIINFSNYELEKLFKR 647


>gi|319745993|gb|EFV98275.1| DNA mismatch repair protein HexB [Streptococcus agalactiae ATCC
           13813]
          Length = 676

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 304/645 (47%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + NQIAAGE++ERPS  +KEL+EN++DA SS++   +   G    QITDNG 
Sbjct: 22  KIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGE 81

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMTSE+  ++++RH TSKI    D   I T GFRGEALPSI ++S +T+ +   Q   G 
Sbjct: 82  GMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGT 141

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I     V+   GT + V +LFF  PARL ++KS Q E   I D++ R+++A+
Sbjct: 142 LLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAH 201

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 202 PEVAFTLINDGKEMTK---TSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSL 258

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 259 PELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 318

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      + + I  +I +++ +  +   ++ +    S+   D   +T      
Sbjct: 319 HPTKQEVRISKERELMSLISSAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQ 378

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                           T +    +   +
Sbjct: 379 SGLYYDRTKNDFFIDADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRD 438

Query: 375 RLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +  + + + S D   S+ +     + ++  E++ +       Q+H  Y+ +Q   GL I+
Sbjct: 439 QADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYII 498

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R+       + Q LL P + +    +   + E    L  +GI  E 
Sbjct: 499 DQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEP 558

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G N   +RE P  + ++ +   + ++ D ++ ++   +++     +   M+C  SI++ 
Sbjct: 559 YGNNTFILREHPIWMKEEEVESGVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKAN 617

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 618 HTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKR 662


>gi|227544211|ref|ZP_03974260.1| DNA mismatch repair protein MutL [Lactobacillus reuteri CF48-3A]
 gi|300908207|ref|ZP_07125673.1| DNA mismatch repair protein MutL [Lactobacillus reuteri SD2112]
 gi|133930483|gb|ABO43813.1| MutL [Lactobacillus reuteri]
 gi|227185804|gb|EEI65875.1| DNA mismatch repair protein MutL [Lactobacillus reuteri CF48-3A]
 gi|300894634|gb|EFK87990.1| DNA mismatch repair protein MutL [Lactobacillus reuteri SD2112]
          Length = 668

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 180/653 (27%), Positives = 300/653 (45%), Gaps = 64/653 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L   + NQIAAGE+IERP+  +KEL+ENSLDA S RV+ ++   G    ++ D+G 
Sbjct: 3   KIHELDNILANQIAAGEVIERPASIVKELVENSLDAHSHRVDIIVENSGLDSVRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+I +A  RH TSKI+   D   + T GFRGEALPSI +V+ +TL +       G 
Sbjct: 63  GIAAEDIRLAFHRHATSKINSRHDLFKVQTMGFRGEALPSIASVADVTLTTAQAGQEEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G K   V+P     GT ++V DLFF  PARL +LKS Q E   ITD+I R+A+A 
Sbjct: 123 MIHLRGGKELVVKPAGARQGTDIKVTDLFFNTPARLKYLKSPQTELTRITDIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+F+       ++   + N N  + ++ + G       +E++   ++  + G+  +
Sbjct: 183 PAVAFSFTHNGR---ELFRSAGNNNLQQVVAAIYGVQAGRKMLEISGADDDFKVSGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R +++  +   I   Y   + +GRYP+ V+ +++DP  VDVNV
Sbjct: 240 PELTRASRQYITITINHRYIRNFELTKAITQGYESKLMVGRYPIAVINIDLDPVLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------------SS 335
           HPAK  +R      +   I ++I++ I  + +                          S 
Sbjct: 300 HPAKREVRLSKEQQLIKLIAETIRQRIAVENLIPDVDADQFIPNDDEVADLDRRLKEASP 359

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN--------------RLSTNDL 381
           V     IS+        T +   A       + L  +                 +   D 
Sbjct: 360 VYHAAPISAVPATEKAATEISTPAADNPAHADALDSEIPAPIVIHHLEDLNTLAMQKFDE 419

Query: 382 LPSDDPTYSEDNDPV--------------------EESEATHYQLGIACAQIHQNYIISQ 421
              ++   +  + PV                    ++ +   +       Q+   ++++Q
Sbjct: 420 RYQNEGEVTPFSAPVPTMTKKPVKPANIELDVHDKQDQQQNRFPDLQYIGQLQGTFLLAQ 479

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             DGL IVDQHAA ER+ +E  RQ         Q  L P +++    +   I +H + L 
Sbjct: 480 AGDGLYIVDQHAAQERINYEYYRQKIGEVSADQQNFLVPLVLNYSTVDAMTINQHLDTLA 539

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            +G++ E FG N+  +R  P    +       +++ID +I +    T+++        M+
Sbjct: 540 AVGLELESFGQNSFILRSHPTWFKEGQEEDTAKEMIDWLIKNGK-LTVKEFRMKTAIMMS 598

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +I++   +   E   LL+ + +  N   C HGRP  +     D+EK+F R
Sbjct: 599 CKRAIKANHHLDEREAKALLKRLPQCENPFNCPHGRPVTVHFNDQDLEKMFKR 651


>gi|323703570|ref|ZP_08115215.1| DNA mismatch repair protein MutL [Desulfotomaculum nigrificans DSM
           574]
 gi|323531473|gb|EGB21367.1| DNA mismatch repair protein MutL [Desulfotomaculum nigrificans DSM
           574]
          Length = 627

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 190/630 (30%), Positives = 304/630 (48%), Gaps = 42/630 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   NQIAAGE++ERP   +KEL+ENSLDA ++R+   +  GG S  ++ DNG 
Sbjct: 3   RIIVLDETTANQIAAGEVVERPVSVVKELVENSLDAGATRIIVELTQGGLSGIKVVDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +  QRH TSKI    D + I T GFRGEALPSI +V+ LTL +R  ++  G 
Sbjct: 63  GMSPEDAMLCWQRHATSKIRQAADLNRITTLGFRGEALPSIASVAKLTLTTRAGEDLAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +   +I    PV    GT +EV++LFF  PAR  +LKS   E   ++D+I R+A+A 
Sbjct: 123 EVLVEAGQILRSSPVGCPAGTTIEVKELFFNTPARRKYLKSPHAEAGQVSDLINRLALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V     +     +   F   NG+  +  + V G D + + +E+N +     ++G    
Sbjct: 183 PDVRIELRSNGRVVF---FSPGNGSLRDTAAAVFGADNVRSMIEVNYQGRLFCIKGLISK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +      FINGR ++   I S ++ AY   IP GR+P+ VL + +DP QVDVNV
Sbjct: 240 PVLTRASRQYQSFFINGRYIRSGLISSVLQQAYQTQIPSGRFPIAVLHISLDPTQVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-----------------------------KKG 330
           HP K  +R      +   ++ ++ + +N                             +  
Sbjct: 300 HPTKMEVRLAQEKEVAEELLAALSEPLNLPPAITGLWEIMPGRQHQSAKKITPVASPQPE 359

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE---KLFLQENRLSTNDLLPSDDP 387
                   K  +     DN  +  L     + T TQ     +  ++  ++T + +     
Sbjct: 360 QIKDISEEKSELPPLAPDNGVRKQLSWPLAADTVTQSEVKPVVTKQVPIATGNPIKPQLA 419

Query: 388 TYSEDNDPVEESE--ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
            + +  +  +E    A  +       Q+   Y+++Q T GL I+DQHAAHER+++EK   
Sbjct: 420 NHQKVLEVSQEYSTGAEVFPNLSPVGQVLPTYVLAQGTTGLYIIDQHAAHERVLYEKYLH 479

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                 + SQ LL P  + L   E  LI+EH  +    G   E FG +   +R +P    
Sbjct: 480 QLQ-QGVQSQVLLNPLTLQLSHHEAQLIIEHILEFSEFGFILEHFGGDTFLLRGVPPQAG 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            K I  +  D++  + D+          I+++ A MAC  +I++G+++   E+  LL  +
Sbjct: 539 NKPIE-IFMDLLTRLQDNPANRLDRGLIIDHLAAVMACRDAIKAGQRLGPTEIMALLDGL 597

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +      C HGRPT I +   +++K F R
Sbjct: 598 AECQRPFTCPHGRPTVINITHEELKKRFKR 627


>gi|77405115|ref|ZP_00782214.1| DNA mismatch repair protein HexB [Streptococcus agalactiae H36B]
 gi|77410860|ref|ZP_00787217.1| DNA mismatch repair protein HexB [Streptococcus agalactiae CJB111]
 gi|77163078|gb|EAO74032.1| DNA mismatch repair protein HexB [Streptococcus agalactiae CJB111]
 gi|77176258|gb|EAO79028.1| DNA mismatch repair protein HexB [Streptococcus agalactiae H36B]
          Length = 659

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 304/645 (47%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + NQIAAGE++ERPS  +KEL+EN++DA SS++   +   G    QITDNG 
Sbjct: 5   KIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGE 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMTSE+  ++++RH TSKI    D   I T GFRGEALPSI ++S +T+ +   Q   G 
Sbjct: 65  GMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGT 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I     V+   GT + V +LFF  PARL ++KS Q E   I D++ R+++A+
Sbjct: 125 LLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 185 PEVAFTLINDGKEMTK---TSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSL 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 242 PELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      + + I  +I +++ +  +   ++ +    S+   D   +T      
Sbjct: 302 HPTKQEVRISKERELMSLISSAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQ 361

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                           T +    +   +
Sbjct: 362 PGLYYDRTKNDFFIDADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRD 421

Query: 375 RLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +  + + + S D   S+ +     + ++  E++ +       Q+H  Y+ +Q   GL I+
Sbjct: 422 QADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYII 481

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R+       + Q LL P + +    +   + E    L  +GI  E 
Sbjct: 482 DQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEP 541

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G N   +RE P  + ++ +   + ++ D ++ ++   +++     +   M+C  SI++ 
Sbjct: 542 YGNNTFILREHPIWMKEEEVESGVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKAN 600

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 601 HTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKR 645


>gi|312865750|ref|ZP_07725972.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus downei F0415]
 gi|311098625|gb|EFQ56847.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus downei F0415]
          Length = 651

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 305/639 (47%), Gaps = 50/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERPS  +KEL+EN++DA S+++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPSSVVKELVENAIDAGSTQITVEIEESGLKKIQVTDNGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ ++++RH TSKI +  D   I T GFRGEALPSI ++S LT+ +     + G 
Sbjct: 63  GIENDDVALSLRRHATSKIKNQADLFRIRTLGFRGEALPSIASISDLTIKTAVKGADYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I S  P++   GT + V DLFF  PARL ++KS Q E   I DVI R ++ +
Sbjct: 123 LLVAKGGEILSQEPISTPVGTKITVEDLFFNTPARLKYMKSLQAELGHIVDVINRQSLGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F          ++   +  G+  + I+ + G       VE++    +  + GY  +
Sbjct: 183 PEIAFILINEGR---ELTKTAGTGDLRQAIAGIYGLTTAKKMVEISNSDLDFKVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +++ ++ +   ++ +    S    +   +T LP   
Sbjct: 300 HPTKQEVRISKEKELMQLIREAIAESLREQDLIPDALENLAKSSVRKVEKPVQTSLPLKQ 359

Query: 360 TSLTNTQ--------------------------------------------EKLFLQENR 375
           TSL   Q                                            ++   +   
Sbjct: 360 TSLYYDQKRQDFFLKSDNQIAENQSGPASEPVNQVDNSVKSVSSSTSVKQAQRPQPEGQD 419

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
               D+  S      +  D ++  E++ +       Q+   Y+ +Q   GL I+DQHAA 
Sbjct: 420 GEHPDIDFSKKAQTHKLMDRLDREESSAFPELDYFGQMQGTYLFAQGQGGLYIIDQHAAQ 479

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+ +E  R+       + Q LL P + +    +   + E    L+++GI  E +G N  
Sbjct: 480 ERVKYEYYREKIGDVDSSLQQLLVPYLFEFRAEDFINLQEKMPLLNQVGIYLEPYGNNTF 539

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI++   +   
Sbjct: 540 ILREHPIWMKEEEIESGVYEMCDMLLLTNQV-SIKVYRAELAIMMSCKRSIKANHALDDY 598

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 SARNLLVQLSQCKNPYNCPHGRPVLVNFTKSDMEKMFRR 637


>gi|76787614|ref|YP_330627.1| DNA mismatch repair protein [Streptococcus agalactiae A909]
 gi|123744498|sp|Q3JYM6|MUTL_STRA1 RecName: Full=DNA mismatch repair protein mutL
 gi|76562671|gb|ABA45255.1| DNA mismatch repair protein HexB [Streptococcus agalactiae A909]
          Length = 657

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 304/645 (47%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + NQIAAGE++ERPS  +KEL+EN++DA SS++   +   G    QITDNG 
Sbjct: 3   KIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMTSE+  ++++RH TSKI    D   I T GFRGEALPSI ++S +T+ +   Q   G 
Sbjct: 63  GMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I     V+   GT + V +LFF  PARL ++KS Q E   I D++ R+++A+
Sbjct: 123 LLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEVAFTLINDGKEMTK---TSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      + + I  +I +++ +  +   ++ +    S+   D   +T      
Sbjct: 300 HPTKQEVRISKERELMSLISSAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQ 359

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                           T +    +   +
Sbjct: 360 PGLYYDRTKNDFFIDADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRD 419

Query: 375 RLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +  + + + S D   S+ +     + ++  E++ +       Q+H  Y+ +Q   GL I+
Sbjct: 420 QADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYII 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R+       + Q LL P + +    +   + E    L  +GI  E 
Sbjct: 480 DQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEP 539

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G N   +RE P  + ++ +   + ++ D ++ ++   +++     +   M+C  SI++ 
Sbjct: 540 YGNNTFILREHPIWMKEEEVESGVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKAN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 HTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKR 643


>gi|77408142|ref|ZP_00784888.1| DNA mismatch repair protein HexB [Streptococcus agalactiae COH1]
 gi|77173242|gb|EAO76365.1| DNA mismatch repair protein HexB [Streptococcus agalactiae COH1]
          Length = 659

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 174/645 (26%), Positives = 304/645 (47%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + NQIAAGE++ERPS  +KEL+EN++DA SS++   +   G    QITDNG 
Sbjct: 5   KIIELPDILANQIAAGEVVERPSSVVKELVENAIDAGSSQITIEVEESGLKKIQITDNGE 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMTSE+  ++++RH TSKI    D   I T GFRGEALPSI ++S +T+ +   Q   G 
Sbjct: 65  GMTSEDAVLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSIASISLMTIKTATEQGKQGT 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  I     V+   GT + V +LFF  PARL ++KS Q E   I D++ R+++A+
Sbjct: 125 LLVAKGGNIEKQEVVSSPRGTKILVENLFFNTPARLKYMKSLQSELAHIIDIVNRLSLAH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 185 PEVAFTLINDGKEMTK---TSGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSL 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 242 PELTRANRNYITLLINGRYIKNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      + + I  +I +++ +  +   ++ +    S+   D   +T      
Sbjct: 302 HPTKQEVRISKERELMSLISSAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQ 361

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                           T +    +   +
Sbjct: 362 SGLYYDRTKNDFFIDADTVSEPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRD 421

Query: 375 RLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           +  + + + S D   S+ +     + ++  E++ +       Q+H  Y+ +Q   GL I+
Sbjct: 422 QADSENFIHSQDYLSSKQSLNKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYII 481

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  R+       + Q LL P + +    +   + E    L  +GI  E 
Sbjct: 482 DQHAAQERVKYEYYREKIGEVDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEP 541

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           +G N   +RE P  + ++ +   + ++ D ++ ++   +++     +   M+C  SI++ 
Sbjct: 542 YGNNTFILREHPIWMKEEEVESGVYEMCDMLLLTNEV-SVKKYRAELAIMMSCKRSIKAN 600

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 601 HTLDDYSARHLLDQLAQCKNPYNCPHGRPVLVNFTKADMEKMFKR 645


>gi|291484260|dbj|BAI85335.1| DNA mismatch repair protein [Bacillus subtilis subsp. natto
           BEST195]
          Length = 629

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 183/628 (29%), Positives = 311/628 (49%), Gaps = 40/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA+S+ +E  I   G +  ++ DNG 
Sbjct: 5   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDADSTVIEIDIEEAGLASIRVLDNGE 64

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 65  GMENEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEITTST-GEGAGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I S    +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 124 KLVLQGGNIISESRSSSRKGTEIVVSNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L+  S +  ++GY  +
Sbjct: 184 PEVSIRLRHHGK---NLLQTNGNGDVRHVLAAIYGTAVAKKMLPLHASSLDFEVKGYIAL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     +NGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 241 PEITRASRNYMSSVVNGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA--------- 350
           HP+K  +R    T + + I   I+    ++ +  S+ L KK       +           
Sbjct: 301 HPSKLEVRLSKETELHDLIRDGIKDVFKQQQLIPSAQLPKKSAPVIKNEQQFITFDEKPP 360

Query: 351 -----PKTHLPKYA------------------TSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                 K H P Y+                    L      +  QE  L  +D+      
Sbjct: 361 ERKVPEKAHAPSYSPMKLSSVVKEPIDAEEELPPLQFDAPSIVDQEQTLEVSDVSEELPE 420

Query: 388 TYSEDNDPVEESEATHY-QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
           T+ ++    ++  A+    +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+ 
Sbjct: 421 TFEQECHEEQQQPASERVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREK 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +   Q ++ P        E  +I +H ++L  +G+  E FG N+  +R  PA   K
Sbjct: 481 VGEVEPEVQDMIVPLTFHYSTNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPK 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
               +L+ +II +++DS     ++   E     M+C GSI++ R +++ E+  LL ++  
Sbjct: 541 GEEAELIEEIIQQVLDSKNID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRS 599

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   C HGRP  I     ++EK+F R
Sbjct: 600 TSDPFTCPHGRPIIIHHSTYEMEKMFKR 627


>gi|89902077|ref|YP_524548.1| DNA mismatch repair protein MutL [Rhodoferax ferrireducens T118]
 gi|89346814|gb|ABD71017.1| DNA mismatch repair protein MutL [Rhodoferax ferrireducens T118]
          Length = 664

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 191/651 (29%), Positives = 327/651 (50%), Gaps = 61/651 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L +++I+QIAAGE++ERP+  ++EL++N+LDA +++V   +  GG     + D+G 
Sbjct: 15  PILELPDELISQIAAGEVVERPASVVRELVDNALDAGATQVTVRLLAGGVRLIAVEDDGA 74

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+PMA +RH TSKIS   D  ++ T GFRGEAL +I +++   + SR    N   
Sbjct: 75  GILREELPMAFKRHATSKISSLTDLESVGTMGFRGEALAAINSIADCVIRSRATGQNNAY 134

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   +PVA + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 135 LLDGGSGEL---QPVARSTGTTVEVKELFFSTPARRKFLKTDATELAHCVEAVRRHALAR 191

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG----NFPERISQVIGEDFINNAVELNEK-------- 227
           P V F          +       G       +R++ V+G +F+  +V ++ +        
Sbjct: 192 PDVGFAIWHEGKLVEQWRRCEGRGPALAALEQRLADVLGAEFVARSVWVDFQSSTSPGRS 251

Query: 228 --SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
             +  I + G  GIP   R  A+Q + ++NGR V+DK +    R+AY + +   R PV  
Sbjct: 252 DNTPSIRVWGRAGIPDAARARADQQFAYVNGRFVRDKVLSHAARSAYDDVLHGQRQPVFA 311

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---VLSKKMI 342
           L +EIDP +VDVNVHP K  +RFR+   +   +  +++ A+    + +++      ++ +
Sbjct: 312 LYVEIDPTRVDVNVHPTKIEVRFRDSREVHQAVRHALEDALAAPRVGSATSLGTTGRQSV 371

Query: 343 SSFHQDNAPKTHLP------KYATSLTNTQEKLFL---------------QENRLSTNDL 381
           ++ +   AP+   P      +    + + Q  +                 Q +  +   L
Sbjct: 372 AAANAGLAPEPSAPVVYIQNQSLAPVISEQAAINFGVQTGHRVSDLGALWQPDGAAPVGL 431

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                        P        + LG A AQ+   YI+++   GL+IVD HAAHER+++E
Sbjct: 432 HNKPALAAPLTAPPAAPLPGGDWPLGRALAQLQGIYILAENAQGLIIVDMHAAHERIVYE 491

Query: 442 KMRQDFNSTK------------------ITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           +++  +                      + SQ LL P        E      H + L  L
Sbjct: 492 RLKAQWRERGSAVNATSGWIGSSATRPGLASQPLLIPATFAATPSEVTTAEAHVDTLQTL 551

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G++   F    +A+R +P  L++ +  +L R ++ E+     +  ++     +L++MAC+
Sbjct: 552 GLEITAFSAKTLAVRAVPTTLAQGDAVELARGVLAELAQHEASTVIERAQNELLSSMACH 611

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           G++R+ R++   EMN LLR+ME    S QCNHGRPT+ + KLS+++ LF R
Sbjct: 612 GAVRANRRLTLEEMNALLRQMEATERSDQCNHGRPTWRQFKLSELDALFLR 662


>gi|325689188|gb|EGD31195.1| DNA mismatch repair protein HexB [Streptococcus sanguinis SK115]
          Length = 688

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 184/635 (28%), Positives = 301/635 (47%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KEL+ENS+DA +S++   I   G    Q+TDNG 
Sbjct: 44  KIIELPEILANQIAAGEVIERPSSVVKELVENSIDAGASQITIEIEEAGLKSIQVTDNGE 103

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A++RH TSKI    D   I T GFRGEA+PSI +VS  T+ +       G 
Sbjct: 104 GIDHEDVPLALRRHATSKIKKQADLFRIRTLGFRGEAIPSIASVSRFTIETATEAGQHGT 163

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I    P +   GT +++ DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 164 LLVAQGGEIEEHEPTSSPLGTKIKIEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 223

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT  +      +    + +GN  + I+ + G       VE++    +  + GY  +
Sbjct: 224 PEVAFTLISDGREMTR---TAGSGNLRQAIAGIYGLATAKKMVEISASDLDFEVSGYVSL 280

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 281 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVINIQIDPYLADVNV 340

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +        +T LP   
Sbjct: 341 HPTKQEVRISKERELMALISQAIATSLKEQDLIPDALENLAKSTVKRATKPEQTSLPLKE 400

Query: 357 -----------------------KYATSLTNTQEKLFLQENRLSTN-------------- 379
                                   +  S     E    +    ST+              
Sbjct: 401 NRLYYDKEQNDFFLKPQVAEQQLSFEESAKPVHEATDEKVEPQSTSVKFAERKPVSYDQL 460

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +     D +++ E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 461 DHPELDQASLERAVDKLKQEEKSSFPELEYFGQMHGTYLFAQGKGGLYIIDQHAAQERVK 520

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  R+       + Q LL P I +    +   I +  E L   GI  E +G N   +RE
Sbjct: 521 YEYYREKIGDVDNSQQQLLVPYIFEFPADDMLRIKQRIELLEDAGIFLEEYGANQFILRE 580

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P    ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 581 HPIWFKEEEIEAGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSARD 639

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 640 LLFQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 674


>gi|329114388|ref|ZP_08243150.1| DNA mismatch repair protein MutL [Acetobacter pomorum DM001]
 gi|326696464|gb|EGE48143.1| DNA mismatch repair protein MutL [Acetobacter pomorum DM001]
          Length = 646

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 229/628 (36%), Positives = 352/628 (56%), Gaps = 41/628 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L E I+N+IAAGE+IERP+ A+KEL+EN++DA + R+E  +AGGG     +TD+G GM
Sbjct: 22  RRLPEVIVNRIAAGEVIERPAAAVKELVENAIDAGARRLEVSLAGGGVDRIIVTDDGVGM 81

Query: 64  TSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +++++ +AV RHCTSK+ D+   +I T GFRGEALPSIGA + L + SRP   +   +I 
Sbjct: 82  SADDLALAVDRHCTSKLRDETLVHISTLGFRGEALPSIGAAARLCITSRPKGESGAWRIR 141

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+S V P A  PGT V V DLFF  PAR  FLKS +VE     +V+RR+A+A P+ 
Sbjct: 142 VEGGKVSPVEPAAGAPGTSVVVEDLFFATPARRKFLKSARVEGRHAENVVRRLALAVPQT 201

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           +F F   +   + +       +   R + ++     +  +E++ + + +TL G+   P+ 
Sbjct: 202 AFRFVLDERVLFDLPA----QDMAARSAALLDASEADGFLEISGERDGMTLSGFICPPSV 257

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R  AN  ++ +NGR V D  + + +R AY   I  GR+PVV ++L + P +VDVNVHPA
Sbjct: 258 HRSTANGQFMLVNGRPVVDPVLKTAVRVAYRRVIEPGRHPVVAIMLTVPPDRVDVNVHPA 317

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINK----KGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           K+ +RF +   +R+ +I +IQ+A+       G+      + +    ++            
Sbjct: 318 KTELRFADEAGVRSLVIGTIQRALEHGAGSVGMRPVLSSAPRQARIWYPPEKGAAPPMPA 377

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--------------------- 397
               T T E +   E RL   D   +          P                       
Sbjct: 378 PAFHTPTPEGVRFAEGRLQFGDAPAARTLPPVAMPSPSAGWDASAVNTPTTGQAASSYVM 437

Query: 398 -----ESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTK 451
                 S A  + LG A AQ+   YI++   DG LV+VDQHAAHERL  E++R  F S  
Sbjct: 438 DGASGPSVAADHPLGAAIAQVLDTYILAVAADGSLVLVDQHAAHERLTHERLRAQFLSGH 497

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P+++DL   +  L++     L +LG++ E FG +++ +R +PA+L   +   
Sbjct: 498 VQAQRLLVPDVVDLPRVQVELLLARQPTLEKLGVEIEAFGGDSVLVRALPAMLRSSDAVN 557

Query: 512 LLRDIIDEIIDSSTTYT-----LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
           LLRD+ DE+             L  R++ ++A MAC+GSIR+GR++   EMN LLR+ME+
Sbjct: 558 LLRDLADELEADENGAPDEMAALDGRLDAVIARMACHGSIRAGRRLSVEEMNALLRQMEE 617

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            P +  C+HGRPT++KL  +D+EKLFGR
Sbjct: 618 TPRAGTCSHGRPTWLKLSKADLEKLFGR 645


>gi|227432073|ref|ZP_03914086.1| DNA mismatch repair protein MutL [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352155|gb|EEJ42368.1| DNA mismatch repair protein MutL [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 651

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 178/632 (28%), Positives = 310/632 (49%), Gaps = 46/632 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I +LS  + NQIAAGE+IERP+  +KEL+EN++DA +++++ ++   G+S  ++ DNG
Sbjct: 1   MRIHELSNLLANQIAAGEVIERPASVVKELVENAIDAGATQIDVIVEEAGESLIRVVDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+A  RH TSKIS+  D  NI + GFRGEALPSI A+S +TL +   +  +G
Sbjct: 61  EGINPEDVPLAFSRHATSKISNRHDLFNIMSLGFRGEALPSIAAISDVTLNTTTQEAPSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               I G K  S  P     GT+V VRDLF+  PARL +LK  Q E + I D++ R+A++
Sbjct: 121 IMYHIKGGKQVSATPANGRRGTVVSVRDLFYNTPARLKYLKRPQTELSRIADIMNRIALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  V+FT +    N  + N    +GN    I+ + G D       +  + ++  + G+  
Sbjct: 181 YTNVAFTVTADGRNILQTN---GDGNQQRVIAAIYGRDVAQKMRAIAGEDDDFNITGFVS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P   RG+ +   + +NGR +++ F+ + +   Y   + +GR+P+ V+ +  DP  VDVN
Sbjct: 238 LPELTRGSRDYLTILVNGRFIKNFFVSNAVIRGYGSKLMVGRFPMGVININTDPLLVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLP 356
           VHP K+ IR      +   II +++     + +   +   L  ++ ++  +  APK   P
Sbjct: 298 VHPQKAEIRLSKEAELSALIIDTVKSCFADENLIPDAYENLYGQVQTNKIEPPAPKQVAP 357

Query: 357 KYATSLTNTQE-----------------------KLFLQENRLSTNDLLPSDDPTYSEDN 393
               ++  T                           F Q+     N  +  D+ T     
Sbjct: 358 WAKPNMEQTIAINTGIDSNEVVINQKADLMNDAVNEFTQKYAHEPNLPIFDDEITVQVSE 417

Query: 394 D---------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           D                +   + + +       Q+H  ++ +Q+++G  ++DQHAA ER+
Sbjct: 418 DISSYNKPEISTQEGLDISPKKPSGFPNLEYIGQMHGTFLFAQSSEGFYLIDQHAAQERV 477

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R++        Q +L P  I+    +   I + + +L  +G+  E FGP  + +R
Sbjct: 478 KYEYYRKEIGQVGTNKQRMLVPITINYSVADMLKIADKEAELEAIGLTLEPFGPTTVIVR 537

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P    K    + +++++D I+      T+ +  E     M+C  S+R+   +  ++  
Sbjct: 538 EHPTWFEKGQETETIKEMVDWILRDGN-LTVAEFRERTAIMMSCKRSVRANMHLSDLQAR 596

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            LL  +    N   C HGRP      L+++EK
Sbjct: 597 TLLESLASTENPYNCPHGRPVVTSFTLTEMEK 628


>gi|258509229|ref|YP_003171980.1| DNA mismatch repair protein [Lactobacillus rhamnosus GG]
 gi|257149156|emb|CAR88129.1| DNA mismatch repair protein mutL [Lactobacillus rhamnosus GG]
 gi|259650513|dbj|BAI42675.1| DNA mismatch repair protein [Lactobacillus rhamnosus GG]
          Length = 650

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 170/641 (26%), Positives = 301/641 (46%), Gaps = 53/641 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++  ++  G     ++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVKVSAAGLQTIHVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ +TL +       GA
Sbjct: 63  GIDPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVTLTTAT-DAGIGA 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G ++ S    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 KIHVKGGQVESQTTAAHRRGTDVEVSDLFFNTPARLKYMKSQQTELGKIVDIVSRLALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PKIAFTVSHDGNMMVR---TAGQGDLRQTLAGIYGLPVARSMVDFQAEDLDFKVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +++D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVISIQMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HP K+ +R      + + + ++I+  + K+ +   +                        
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRARLAKENLIPDAMDNLPKRERYDLDQLELTLNKISP 358

Query: 336 --VLSKKMISSFHQDNAPKTHLPKYATSLTNTQE------------KLFLQENRLSTNDL 381
                    +   ++    T     +     T+              +F +  RL+  D 
Sbjct: 359 KTTAVPNQGAEVRENADTNTGNTPTSQPAAQTEAAVDLTINDLDDRPIFDEPQRLAAWDQ 418

Query: 382 LPSDDPTY--------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                           +  +D         +      AQ+H  Y++++  DGL I+DQHA
Sbjct: 419 RYQTLDANVAPALVEDTAASDLKRPEPTERFPDLTYLAQVHGTYLLAEAGDGLYILDQHA 478

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A ER+ +E  RQ         Q LL P ++D    +   I  H + L  +G+  E FG N
Sbjct: 479 AQERVNYEFYRQAIGEVSNDQQHLLVPIVLDYSAADAINIRTHRDVLEAVGLYLEDFGQN 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
           +  +   P           +++++D ++      ++    E     M+C  +I++   + 
Sbjct: 539 SFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGKI-SVAAFREKTAIMMSCKRAIKANHHLD 597

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DQQARALLQKLPQCENPFNCPHGRPVLVHFSNTDLEKMFKR 638


>gi|58698260|ref|ZP_00373179.1| mismatch repair protein MutL [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225631007|ref|YP_002727798.1| DNA mismatch repair protein MutL [Wolbachia sp. wRi]
 gi|254766185|sp|C0R515|MUTL_WOLWR RecName: Full=DNA mismatch repair protein mutL
 gi|58535232|gb|EAL59312.1| mismatch repair protein MutL [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592988|gb|ACN96007.1| DNA mismatch repair protein MutL [Wolbachia sp. wRi]
          Length = 605

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 233/611 (38%), Positives = 351/611 (57%), Gaps = 24/611 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA S  +E  I  GG++   +TD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIEIKIESGGRNLIIVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+  + +   
Sbjct: 61  NGVEKNDLELAFMRHATSKLSDSELIEIKHLGFRGEALPSIAAVSRIKLSSKAREASEAW 120

Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I+  G EKI    P +++ GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SISYEGGEKIGEQTPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K+   +   +   R+ +V  E+F  +++E+NE+ + I L G+  
Sbjct: 181 NYHIGFTLTSGNK---KLLKYAKQTSLFHRLCEV-EEEFQGSSLEINEEEDGIKLTGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NRG + Q Y F+NGR ++D  ++  +R AY + IP  RYP   L LEI   QVDVN
Sbjct: 237 KPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP KS +RF+N  +I   + + + KA++++  +  +   K   +     + P     + 
Sbjct: 297 VHPNKSEVRFQNKKLIYEIMTRGLIKALSRRIGTFPAHDQKMDSTLPDPFDKPDVQNERR 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT--------------HY 404
            +   N   K F   N  +      S    Y+       ++EA                +
Sbjct: 357 PSPFENQLIKEFASPNEKAKGLSEQSKSFDYTGIQKFPAQAEAMVLEKKVLEQVDLIESH 416

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A  Q++  YII++  D L+IVDQHAAHERL++E ++     + I  Q LL PE ++
Sbjct: 417 PLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---QKSSIKRQKLLLPETVE 473

Query: 465 L-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +  +    +I  + + L  +G   E    N + ++EIPAIL   ++ ++L +IID + + 
Sbjct: 474 IKNQAGMEMIEIYKDKLFEMGFDIEIKSENKVIVKEIPAILGAIDVKEMLINIIDRLTEI 533

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             T  ++D++  ILAT+AC+GSIR+GRKM+  EMN LLR+MEK P S QCNHGRPT+I++
Sbjct: 534 EDTLPVEDKVNKILATIACHGSIRAGRKMRLDEMNELLRQMEKTPYSGQCNHGRPTYIEM 593

Query: 584 KLSDIEKLFGR 594
           KLSDIEKLF R
Sbjct: 594 KLSDIEKLFER 604


>gi|260887306|ref|ZP_05898569.1| DNA mismatch repair protein MutL [Selenomonas sputigena ATCC 35185]
 gi|330838940|ref|YP_004413520.1| DNA mismatch repair protein MutL [Selenomonas sputigena ATCC 35185]
 gi|260862942|gb|EEX77442.1| DNA mismatch repair protein MutL [Selenomonas sputigena ATCC 35185]
 gi|329746704|gb|AEC00061.1| DNA mismatch repair protein MutL [Selenomonas sputigena ATCC 35185]
          Length = 640

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 192/643 (29%), Positives = 310/643 (48%), Gaps = 56/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE++ERP+  +KEL+ENS+DA ++++E  I  GG S  ++TDNG 
Sbjct: 3   RIHVLDDNTINKIAAGEVVERPASVVKELVENSIDAGATKIEVEIMAGGTSLMRVTDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +A++RH TSKI +  D  ++ T GFRGEALP+I AVS   + +R      G 
Sbjct: 63  GMSLEDAKLAIERHATSKIQEVGDLYSLRTLGFRGEALPTIAAVSRFRMRTRKEGEELGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q++I G     +     + GT ++V DLFF  PAR  FLK+   E   I+D + ++A++ 
Sbjct: 123 QVSIIGGVTHDIGETGCSLGTTIQVEDLFFNTPARKKFLKTTHTEGGRISDFMTKLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F   +             NG+  + I  + G    +  + L+ +  ++ + GY   
Sbjct: 183 PDIAFRLISNNKTAAM---TPGNGSLFDAIRSIYGSQAADALLALSFEDEDVKITGYITK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  + +       +NGR + +K I   I  AY   +P   +P+VVL + +  R VDVNV
Sbjct: 240 PSMLKSSRAWQTFIVNGRIISNKAIAKAIDNAYHSLLPKSGFPMVVLNIAVPQRSVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----------------LSKKMI 342
           HP KS ++F +   I   + +++  AI   G +   V                       
Sbjct: 300 HPQKSEMKFEDEGRIFKAVYKTVVDAIRPVGQTLEDVAASVQNVERRYAMEPMQFVAATQ 359

Query: 343 SSFHQDNA-----------------PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           +S  +D A                  +    + A S    Q  L  +    S +D +P+D
Sbjct: 360 ASEEEDFAGNGSAKTSFGIRYTENPYQASPAQPAMSFAEAQSVLKGEGAAYSAHDGVPAD 419

Query: 386 DPTYSEDNDPVEESEAT--------------HYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                E  D   + + +              ++       Q+   YII++  DGL IVDQ
Sbjct: 420 GGLVREARDAAYKPQGSTAEMPLADVSEAGLYHGGITPIGQVDLCYIIAKDKDGLYIVDQ 479

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAAHER++++K      + +I SQ LL   I+     E AL+ E+ E   RLG   E  G
Sbjct: 480 HAAHERILYDKF--SAMAERIPSQQLLVHPILSFDAREAALVSENQELFRRLGFDMEACG 537

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
                ++E+PA +       ++R+I+  + D   T T Q+     LATMAC  +I+SG +
Sbjct: 538 ERDFRLKEVPADVPVSEAEDMIREILARLYDMHET-TAQEIRHACLATMACRAAIKSGDE 596

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   +M  +L E+ +      C HGRPT +K    ++ K+F R
Sbjct: 597 LNFRQMQIVLEELSQTARPYTCPHGRPTILKFSSEELAKMFKR 639


>gi|253750975|ref|YP_003024116.1| DNA mismatch repair protein MutL [Streptococcus suis SC84]
 gi|253752875|ref|YP_003026015.1| DNA mismatch repair protein MutL [Streptococcus suis P1/7]
 gi|251815264|emb|CAZ50829.1| DNA mismatch repair protein MutL [Streptococcus suis SC84]
 gi|251819120|emb|CAR44195.1| DNA mismatch repair protein MutL [Streptococcus suis P1/7]
 gi|319757227|gb|ADV69169.1| DNA mismatch repair protein MutL [Streptococcus suis JS14]
          Length = 645

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 178/632 (28%), Positives = 306/632 (48%), Gaps = 44/632 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++E  +   G    QITDNG G
Sbjct: 4   IIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VSH+ + +    +  G  
Sbjct: 64  IAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  I    PV+   GT + V DLF+  PARL +++S+Q E + I DV+ R+++A+P
Sbjct: 124 LEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKYVRSQQAELSHIVDVVNRLSLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G   + IS + G       VE+  +  +  + GY  +P
Sbjct: 184 EIAFVLVNEGR---ELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ +EIDP   DVNVH
Sbjct: 241 ELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   I ++I +A+ ++ +   ++ +    S+  +  A +  LP    
Sbjct: 301 PTKQEVRISKEKELMTLIREAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREP 360

Query: 361 -----------------------------------SLTNTQEKLFLQENRLSTNDLLPSD 385
                                               + N    +   E +   ++     
Sbjct: 361 KIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPVENRPTSVQFAERQSVESEDQEHP 420

Query: 386 DPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           + +  E     D ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E 
Sbjct: 421 NLSAKELAKLADKLDREETSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYEY 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+       ++Q LL P I +  + +   ++   + L ++G+  E +G N   +RE P 
Sbjct: 481 YREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPI 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       LLR
Sbjct: 541 WMKEEEIESGIYEMCDMLLLTDQV-SIKQYRAELAIMMSCKRSIKANHALDDYSARDLLR 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRR 631


>gi|199597366|ref|ZP_03210796.1| DNA mismatch repair protein [Lactobacillus rhamnosus HN001]
 gi|199591626|gb|EDY99702.1| DNA mismatch repair protein [Lactobacillus rhamnosus HN001]
          Length = 650

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/641 (26%), Positives = 304/641 (47%), Gaps = 53/641 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++  ++  G     ++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVKVSAAGLQTIHVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ +TL +       GA
Sbjct: 63  GIDPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVTLTTAT-DAGIGA 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G ++ S    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 KIHVKGGQVESQTTAAHRRGTDVEVSDLFFNTPARLKYMKSQQTELGKIVDIVSRLALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PKIAFTVSHDGNMMVR---TAGQGDLRQTLAGIYGLPVARSMVDFQAEDLDFKVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +++D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVISIQMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HP K+ +R      + + + ++I+  + K+ +   +                        
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRARLAKENLIPDAMDNLPKRERYDLDQLELTLNKISP 358

Query: 336 -VLSKKMISSFHQDNAPKTHLPKYATSLTNTQE-------------KLFLQENRLSTNDL 381
              +     +  ++NA    +    +      E              +F +  RL+  D 
Sbjct: 359 KTTAVPNQGAEVRENADTNTVNTPTSQPAAQTEAAVDLTINDLDDRPIFDEPQRLAAWDQ 418

Query: 382 LPSDDPTY--------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                           +  +D         +      AQ+H  Y+++++ DGL I+DQHA
Sbjct: 419 RYQTLDANVAPALVEDAAASDLKRPEPTERFPDLTYLAQVHGTYLLAESGDGLYILDQHA 478

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A ER+ +E  RQ         Q LL P ++D    +   I  H + L  +G+  E FG N
Sbjct: 479 AQERVNYEFYRQAIGEVSNDQQHLLVPIVLDYSAADAINIRTHRDVLEAVGLYLEDFGQN 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
           +  +   P           +++++D ++      ++    E     M+C  +I++   + 
Sbjct: 539 SFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGKI-SVAAFREKTAIMMSCKRAIKANHHLD 597

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DQQARALLQKLPQCENPFNCPHGRPVLVHFSNTDLEKMFKR 638


>gi|314933476|ref|ZP_07840841.1| DNA mismatch repair protein HexB [Staphylococcus caprae C87]
 gi|313653626|gb|EFS17383.1| DNA mismatch repair protein HexB [Staphylococcus caprae C87]
          Length = 655

 Score =  501 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 170/656 (25%), Positives = 315/656 (48%), Gaps = 68/656 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA S+ +   +   G +  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDANSTEINIEVEQSGIASIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSK+   DD  +I T GFRGEAL SI +VS +TL +    N  G 
Sbjct: 63  GIEQDDLSLVFHRHATSKLDVDDDLFHIRTLGFRGEALASISSVSKVTLKTCT-DNENGF 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EVYAENGEIINRKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +       +   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PDIRISLVSDGK---TLISTNGSGRTNEVMAEIYGMRVAKDLVHVSGDTSDYHLEGFFAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNRHYISIFINGRYIKNFILNKAILEGYHTLLTIGRYPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQ------- 347
           HP K  +R      + + I++ I++A   + +   + L +     K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYDLIVEKIREAFKDRILIPQNDLDRTPRKNKVLESFGQQKMDFEK 358

Query: 348 ------------------DNAPKTHLPKYATSLTNTQE-----KLFLQENRLSTNDLLPS 384
                             D+   T+  +    + N Q+         +E   +++++  S
Sbjct: 359 RNSEVAQNGDPSEHFSSKDHFNNTNDSEIREGINNYQDTNISLSNQDEEQENASHNIQRS 418

Query: 385 DDPTYSEDNDPV--------------------------EESEATHYQLGIACAQIHQNYI 418
            +  YS+    +                           ++            Q+H  YI
Sbjct: 419 GEDNYSQIQKDILNDMEDDDLSNSESTSNNEGDIKGTVSQNPKRRVPYMEVVGQVHGTYI 478

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I+Q  +G+ ++DQHAA ER+ +E  R          Q LL P      + E  +I ++ +
Sbjct: 479 IAQNENGMFMIDQHAAQERIKYEYFRDKIGEVSNEVQNLLIPLTFHFSKDEQMIIDQYQD 538

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L ++G+  E FG +   +   P    K    ++++D+I+ ++D+     ++   E+   
Sbjct: 539 ELDKVGVHLEHFGGHDYIVNSYPVWFPKAEAQEIIKDMIELVLDNKKVD-VKKIREDAAI 597

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            M+C  SI++   +++ EM+ L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 MMSCKKSIKANHYLKNNEMSDLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 653


>gi|194468324|ref|ZP_03074310.1| DNA mismatch repair protein MutL [Lactobacillus reuteri 100-23]
 gi|194453177|gb|EDX42075.1| DNA mismatch repair protein MutL [Lactobacillus reuteri 100-23]
          Length = 668

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 181/653 (27%), Positives = 303/653 (46%), Gaps = 64/653 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L   + NQIAAGE+IERP+  +KEL+ENSLDA S RV+ ++   G    ++ D+G 
Sbjct: 3   KIHELDNILANQIAAGEVIERPASIVKELVENSLDAHSHRVDIIVENSGLDSVRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+I +A  RH TSKI+   D   + T GFRGEALPSI +V+ +TL +       G 
Sbjct: 63  GIAAEDISLAFHRHATSKINSRHDLFKVQTMGFRGEALPSIASVADVTLTTAQAGQEEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G K   V+P     GT ++V DLFF  PARL +LKS Q E   ITD+I R+A+A 
Sbjct: 123 MIHLRGGKELVVKPAGARQGTDIKVTDLFFNTPARLKYLKSPQTELTRITDIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+F+       ++   + N N  + ++ + G       +E++   ++  + G+  +
Sbjct: 183 PAVAFSFTHNGR---ELFRSAGNNNLQQVVAAIYGVQAGRKMLEISGADDDFKVSGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R +++  +   I   Y   + +GRYP+ V+ +++DP  VDVNV
Sbjct: 240 PELTRASRQYITITINHRYIRNFELTKAIIQGYESKLMVGRYPIAVINIDLDPVLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------------SS 335
           HPAK  +R      +   I ++I+K I  + +                          S 
Sbjct: 300 HPAKREVRLSKEQQLIKLIAETIRKRIAVENLIPDVDADQFIPNDDEVADLDRRLKEASP 359

Query: 336 VLSKKMISSFHQDNA-------PKTHLPKYATSLTNTQEKLFL-------QENRLSTNDL 381
           V     IS+             P+   P +A +L +      +           +   D 
Sbjct: 360 VYHAAPISAVPATEKKATEISTPEADNPAHADALDSEIPAPIVIHHLEDLNTPAMQKFDE 419

Query: 382 LPSDDPTYSEDNDPV--------------------EESEATHYQLGIACAQIHQNYIISQ 421
              ++   +  + P+                    ++ +   +       Q+   ++++Q
Sbjct: 420 RYQNEGEVTPFSAPIPTMTKKPVKPANIELDVHDKQDQQQNRFPDLQYIGQLQGTFLLAQ 479

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             DGL IVDQHAA ER+ +E  RQ         Q  L P +++    +   I +H + L 
Sbjct: 480 AGDGLYIVDQHAAQERINYEYYRQKIGEVSADQQNFLVPLVLNYSTVDAMTINQHLDTLA 539

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            +G++ E FG N+  +R  P    +       +++ID +I +    T+++        M+
Sbjct: 540 AVGLELESFGQNSFILRSHPTWFKEGQEEDTAKEMIDWLIKNGK-LTVKEFRMKTAIMMS 598

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +I++   +   E   LL+ + +  N   C HGRP  +     D+EK+F R
Sbjct: 599 CKRAIKANHHLDEREAKALLKRLPQCENPFNCPHGRPVTVHFNDQDLEKMFKR 651


>gi|258540413|ref|YP_003174912.1| DNA mismatch repair protein [Lactobacillus rhamnosus Lc 705]
 gi|257152089|emb|CAR91061.1| DNA mismatch repair protein mutL [Lactobacillus rhamnosus Lc 705]
          Length = 650

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/641 (26%), Positives = 306/641 (47%), Gaps = 53/641 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++  ++  G     ++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVKVSAAGLQTIHVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ +TL +       GA
Sbjct: 63  GIDPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVTLTTAT-DAGIGA 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G ++ S    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 KIHVKGGQVESQTTAAHRRGTDVEVSDLFFNTPARLKYMKSQQTELGKIVDIVSRLALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PKIAFTVSHDGNMMVR---TAGQGDLRQTLAGIYGLPVARSMVDFQAEDLDFKVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +++D   VDVNV
Sbjct: 239 PETTRMSRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVISIQMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------------- 345
           HP K+ +R      + + + ++I+  + K+ +   ++ +      +              
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRARLAKENLIPDAMDNLPKRERYDLDQLELTLNKISP 358

Query: 346 ------------------HQDNAPKTHLPKYATSLTN------TQEKLFLQENRLSTNDL 381
                             + +N P +     A +  +          +F +  RL+  D 
Sbjct: 359 KTTAVSHQGTEVRENADTNTENTPTSQPAAQAEAAVDLTINDLDDRPIFDEPQRLAAWDQ 418

Query: 382 LPSDDPTY--------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                           +  +D         +      AQ+H  Y+++++ DGL I+DQHA
Sbjct: 419 RYQTLDANVAPALVEDTAASDLKRSEPTERFPDLTYLAQVHGTYLLAESGDGLYILDQHA 478

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A ER+ +E  RQ         Q LL P ++D    +   I  H + L  +G+  E FG N
Sbjct: 479 AQERVNYEFYRQAIGEVSNDQQHLLVPIVLDYSAADAINIRTHRDVLEAVGLYLEDFGQN 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
           +  +   P           +++++D ++      ++    E     M+C  +I++   + 
Sbjct: 539 SFVVEHHPTWFKAGQEEDTIKEMVDWVLRDGKI-SVAAFREKTAIMMSCKRAIKANHHLD 597

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DQQARALLQKLPQCENPFNCPHGRPVLVHFSNTDLEKMFKR 638


>gi|146317719|ref|YP_001197431.1| DNA mismatch repair protein [Streptococcus suis 05ZYH33]
 gi|146319909|ref|YP_001199620.1| DNA mismatch repair protein [Streptococcus suis 98HAH33]
 gi|145688525|gb|ABP89031.1| DNA mismatch repair enzyme (predicted ATPase) [Streptococcus suis
           05ZYH33]
 gi|145690715|gb|ABP91220.1| DNA mismatch repair enzyme (predicted ATPase) [Streptococcus suis
           98HAH33]
 gi|292557519|gb|ADE30520.1| putative mismatch repair protein HexB [Streptococcus suis GZ1]
          Length = 646

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 178/632 (28%), Positives = 306/632 (48%), Gaps = 44/632 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++E  +   G    QITDNG G
Sbjct: 5   IIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VSH+ + +    +  G  
Sbjct: 65  IAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  I    PV+   GT + V DLF+  PARL +++S+Q E + I DV+ R+++A+P
Sbjct: 125 LEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKYVRSQQAELSHIVDVVNRLSLAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G   + IS + G       VE+  +  +  + GY  +P
Sbjct: 185 EIAFVLVNEGR---ELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSLP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ +EIDP   DVNVH
Sbjct: 242 ELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   I ++I +A+ ++ +   ++ +    S+  +  A +  LP    
Sbjct: 302 PTKQEVRISKEKELMTLIREAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREP 361

Query: 361 -----------------------------------SLTNTQEKLFLQENRLSTNDLLPSD 385
                                               + N    +   E +   ++     
Sbjct: 362 KIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPVENRPTSVQFAERQSVESEDQEHP 421

Query: 386 DPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           + +  E     D ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E 
Sbjct: 422 NLSAKELAKLADKLDREETSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYEY 481

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+       ++Q LL P I +  + +   ++   + L ++G+  E +G N   +RE P 
Sbjct: 482 YREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPI 541

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       LLR
Sbjct: 542 WMKEEEIESGIYEMCDMLLLTDQV-SIKQYRAELAIMMSCKRSIKANHALDDYSARDLLR 600

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    N   C HGRP  +    SD+EK+F R
Sbjct: 601 QLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRR 632


>gi|242373589|ref|ZP_04819163.1| DNA mismatch repair protein MutL [Staphylococcus epidermidis
           M23864:W1]
 gi|242348952|gb|EES40554.1| DNA mismatch repair protein MutL [Staphylococcus epidermidis
           M23864:W1]
          Length = 656

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/657 (25%), Positives = 308/657 (46%), Gaps = 69/657 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DAES+ +   +   G +  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAESTEINVEVEQSGVASIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSKI   DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEQDDLGLVFHRHATSKIDADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGF 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EVYAENGEIINSKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +       +   + +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PDIRISLVSDGK---TLISTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +++DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFLLNKAIIEGYHTLLTIGRYPICYINIQMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQ------- 347
           HP K  +R      +   I++ I++A   + +   +   +     K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLFALIVEKIREAFKDRILIPQNDFDRSPKKNKVLESFEQQKMDFEK 358

Query: 348 --------------------------------DNAPKTHLPKYATSLTNTQEKLFLQENR 375
                                           D+  K         + N+         R
Sbjct: 359 RNNSSASNQSASSYQSSENGYRSDSDNSVVNEDSGQKYEYDNSTIDVENSNSDSSHYIQR 418

Query: 376 LSTNDLLPSDDPTYSEDNDP------------------VEESEATHYQLGIACAQIHQNY 417
            S ++   +     +E  +                   + +S            Q+H  Y
Sbjct: 419 TSEDNYFQNQKDILNEIENDQYNELDSSFAKEDDIKGTISKSPHRRVPYMEVVGQVHGTY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II+Q  +G+ ++DQHAA ER+ +E  R+         Q LL P      + E  +I ++ 
Sbjct: 479 IIAQNENGMFMIDQHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYQ 538

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           ++L R+G+  E FG +   +   P    K +  ++++D+I+ +++      ++   E + 
Sbjct: 539 DELDRVGVHLEHFGGHDYIVNSYPVWFPKGDAEEIIKDMINLVLEHKKVD-VKKIREEVA 597

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             M+C  SI++   +++ EM+ L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 598 IMMSCKKSIKANHYLKNNEMSDLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 654


>gi|229552975|ref|ZP_04441700.1| DNA mismatch repair protein MutL [Lactobacillus rhamnosus LMS2-1]
 gi|229313664|gb|EEN79637.1| DNA mismatch repair protein MutL [Lactobacillus rhamnosus LMS2-1]
          Length = 650

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/641 (26%), Positives = 307/641 (47%), Gaps = 53/641 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+ENS+DA++++++  ++  G     ++DNG 
Sbjct: 3   KIHQLSATLSNQIAAGEVIERPASVVKELVENSIDAQATQIDVKVSAAGLQTIHVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI  + D  N+H+ GFRGEAL SI AV+ +TL +       GA
Sbjct: 63  GIDPDDVATAFLRHATSKILTTRDLFNVHSLGFRGEALASIAAVADVTLTTAT-DAGIGA 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G ++ S    A   GT VEV DLFF  PARL ++KS+Q E   I D++ R+A+A 
Sbjct: 122 KIHVKGGQVESQTTAAHRRGTDVEVSDLFFNTPARLKYMKSQQTELGKIVDIVSRLALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK++FT S   +   +    +  G+  + ++ + G     + V+   +  +  + G T +
Sbjct: 182 PKIAFTVSHDGNMMVR---TAGQGDLRQTLAGIYGLPVARSMVDFQAEDLDFKVSGLTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   +   Y   + +GRYP+ V+ +++D   VDVNV
Sbjct: 239 PETTRASRNYLSLVVNGRYIKNFQLTKAVIAGYGSKLMVGRYPMGVISIQMDAALVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------------- 345
           HP K+ +R      + + + ++I+  + K+ +   ++ +      +              
Sbjct: 299 HPTKAEVRLSKEDQLSHLLSEAIRARLAKENLIPDAMDNLPKRERYDLDQLELTLNKISP 358

Query: 346 ------------------HQDNAPKTHLPKYATSLTN------TQEKLFLQENRLSTNDL 381
                             + +N P +     A +  +          +F +  RL+  D 
Sbjct: 359 KTTAVSHQGTEVRENADTNTENTPTSQPAAQAEAAVDLTINDLDDRPIFDEPQRLAAWDQ 418

Query: 382 LPSDDPTY--------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                           +  +D         +      AQ+H  Y+++++ DGL I+DQHA
Sbjct: 419 RYQTLDANVAPALVEDTAASDLKRSEPTERFPDLTYLAQVHGTYLLAESGDGLYILDQHA 478

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A ER+ +E  RQ         Q LL P ++D    +   I  H + L  +G+  E FG N
Sbjct: 479 AQERVNYEFYRQAIGEVSNDQQHLLVPIVLDYSAADAINIRTHRDVLEAVGLYLEDFGQN 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
           +  ++  P           +++++D ++      ++    E     M+C  +I++   + 
Sbjct: 539 SFVVKHHPTWFKAGQEEDTIKEMVDWVLRDGKI-SVAAFREKTAIMMSCKRAIKANHHLD 597

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 598 DQQARALLQKLPQCENPFNCPHGRPVLVHFSNTDLEKMFKR 638


>gi|225869420|ref|YP_002745368.1| DNA mismatch repair protein MutL [Streptococcus equi subsp.
           zooepidemicus]
 gi|259511151|sp|C0MGC4|MUTL_STRS7 RecName: Full=DNA mismatch repair protein mutL
 gi|225702696|emb|CAX00809.1| DNA mismatch repair protein MutL [Streptococcus equi subsp.
           zooepidemicus]
          Length = 660

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 176/648 (27%), Positives = 311/648 (47%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G    QITDNG 
Sbjct: 3   TIIELPEVLANQIAAGEVIERPASVVKELVENAIDAKSSQITVEIEESGLKMIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S LT+ +   +   G+
Sbjct: 63  GMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKLTIKTATAEAEHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +  SG KI  +  V+   GT ++V +LF+  PARL ++KS Q E   + DV+ R+++A+
Sbjct: 123 ILVASGGKIEQLEAVSTPVGTKIKVENLFYNTPARLKYMKSLQAELAHVVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT  +      ++   S  G+  + ++ + G +     ++++    +  + G+  +
Sbjct: 183 PEIAFTLISDGK---QLTQTSGTGDLRQALAGIYGLNTAKKMIDISSADLDFEVGGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  IR      +   I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEIRISKERELMALISTAISESLREQDLIPDALENLARSSTRSFSKPEQTSLPLQP 359

Query: 360 TSL--TNTQEKLFLQENRLSTNDLL----------------------------------- 382
           + L     +   F +E  +S +                                      
Sbjct: 360 SQLYYDPQKNDFFTKETVVSEDSPQGFNHEVLIDSDVKQVDNLQVTKTESEAAAPSVKYA 419

Query: 383 ----------------PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                             +    S+  D +E  E + +       Q+H  Y+ +Q  DGL
Sbjct: 420 SRPDPMLSDGEHPGLDVHNKQKLSQMLDRLENEEQSVFPELDYFGQMHGTYLFAQGRDGL 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 480 FIIDQHAAQERVKYEYYRDKIGEVDNSLQQLLVPYLFEFSGSDFINLQEKMSLLNEVGIY 539

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G +   +RE P  + +  I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 540 LEPYGNHTFILREHPIWMKETEIESGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKHSI 598

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +      +LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 599 KANHSLDDYSARQLLLQLAQCKNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|332522949|ref|ZP_08399201.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314213|gb|EGJ27198.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 655

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 181/643 (28%), Positives = 310/643 (48%), Gaps = 54/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G     ITDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPASVVKELVENAIDAKSSQITIDIEESGLKSITITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++PM++ RH TSKI +  D   I T GFRGEALPSI ++S +T+ S   ++  G+
Sbjct: 63  GMSEQDLPMSILRHATSKIRNQGDLFRIRTLGFRGEALPSIASISEMTIASATEESEHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G KI     ++M  G+ + V +LF+  PARL ++KS Q E   I DVI R+++ +
Sbjct: 123 QLFVRGGKIEGQETISMPVGSRIRVENLFYNTPARLKYMKSLQSELAHIVDVINRLSLGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT  +      +    S +G   + I+ + G       +E+     +  + GY  +
Sbjct: 183 PEIAFTLISDGREMTR---TSGSGQLKQAIAGIYGLKTAKKMIEIANADLDFDISGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+PVVV+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPVVVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I  +I +++  + +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISTAIAESLKAQDLIPDALENLAKSSTRSLPKTEQTRLPLQT 359

Query: 357 ---------------------------------------------KYATSLTNTQEKLFL 371
                                                        + ++       +  +
Sbjct: 360 RKLYYDPHENDFFVEKNEVNEVQTKLYSGSTDLDNAVKLTEEEPIELSSPAVKYASRPEI 419

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
           +E     +DL   +     +  + +E  EA+ +       Q+H  Y+ +Q  DGL I+DQ
Sbjct: 420 EEITGDHSDLTFKNKHKLEQVMERLENEEASIFPELDYFGQMHGTYLFAQGVDGLFIIDQ 479

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAA ER+ +E  R+       + Q LL P + +    +   + E    L+ +GI  E +G
Sbjct: 480 HAAQERVKYEYYREKIGQVDSSLQQLLVPYLFEFSGSDFLTLQEKMSLLNDVGIYLEPYG 539

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
            N   +RE P  + +  I   + ++ D ++ +    ++++    +   M+C  SI++   
Sbjct: 540 QNTFILREHPIWMKESEIEVGIYEMCDMLLLTQEV-SIKNYRAELAIMMSCKKSIKANHT 598

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +      +LL ++ +  N   C HGRP  I    SD+EK+F R
Sbjct: 599 LDDYSARQLLLQLAQCKNPYNCPHGRPVLIHFSKSDMEKMFRR 641


>gi|148259642|ref|YP_001233769.1| DNA mismatch repair protein MutL [Acidiphilium cryptum JF-5]
 gi|166231100|sp|A5FW68|MUTL_ACICJ RecName: Full=DNA mismatch repair protein mutL
 gi|146401323|gb|ABQ29850.1| DNA mismatch repair protein MutL [Acidiphilium cryptum JF-5]
          Length = 582

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/596 (36%), Positives = 334/596 (56%), Gaps = 18/596 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L    IN+IAAGE+IERP+ A+KEL+EN+LDA + R+   I GGG    ++TD+G
Sbjct: 1   MPIRRLDPTTINRIAAGEVIERPAAAVKELVENALDAGARRIGVTIEGGGIGRIEVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   E+P+A++RH TSK++D+    I T GFRGEALPSIGA   LT+ SRP   ++ A
Sbjct: 61  HGIPEAELPLAIERHATSKLTDEALVRIATLGFRGEALPSIGAAGRLTVTSRPAGQDSAA 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G  +  V PVA   GT V V DLF   PAR  FL+S   E     D +R +A+A 
Sbjct: 121 RIVVDGGAVREVEPVAGPVGTCVTVEDLFHATPARRKFLRSAGSEAGSCADAVRHLALAA 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F+ +   +  + +       +  ER++ + G       +E+     E+ L+G+   
Sbjct: 181 PAVGFSLTIDGAASFDLPP----QDRRERVAAIYGRADAEKLLEIEAVREEVALRGFISP 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            +  R  A   ++ +NGR V+D  +   +R AY E IP GR+P+  L LEI    +DVNV
Sbjct: 237 ASLTRAAARHQHMVVNGRPVRDPLLRMALRLAYRERIPAGRHPLAALWLEIPAEMLDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RF  P  +R+ +I ++Q+A+       + + +   +S      A  + +P+Y 
Sbjct: 297 HPAKAELRFATPDAVRSLMIGAVQRALAT----PADLAAAPSVSMPRTSWAASSPMPRYP 352

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            + +         E        L   D   +     V       Y LG   AQ+   YI+
Sbjct: 353 QAESRAARGFAEAE--------LRGLDLPPARVAPEVLPESRPDYPLGTPIAQVFDTYIL 404

Query: 420 SQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +Q+ DG LV+VDQHAAHERL   ++R + +S  I +Q LL P +++L   + A ++   E
Sbjct: 405 AQSGDGTLVLVDQHAAHERLTEIRLRAERDSGAIPAQALLAPSVVELPAEDIARLLGAAE 464

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG++ E FGP A+ +R +PA L+K +   L RD+ D + +S T   L+ +++ +L 
Sbjct: 465 RLAGLGLEIEAFGPGAVLVRAVPAALAKADPAALARDVADTLAESGTAMALEAKLDAVLI 524

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            MAC+ S+R+GR++   EM  LLR ME  P +  C HGRPT ++L   D+E++FGR
Sbjct: 525 RMACHRSVRAGRRLAFAEMEALLRAMETTPLAQTCPHGRPTVLRLSRGDLERMFGR 580


>gi|290581354|ref|YP_003485746.1| putative mismatch repair protein [Streptococcus mutans NN2025]
 gi|254998253|dbj|BAH88854.1| putative mismatch repair protein [Streptococcus mutans NN2025]
          Length = 651

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 183/639 (28%), Positives = 303/639 (47%), Gaps = 50/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G    Q+TDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVIERPASVVKELVENAIDADSSQITIEIEESGLKKIQVTDNGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++ M+++RH TSKI    D   I T GFRGEALPSI ++S LTL +       G 
Sbjct: 63  GIEQADVIMSLRRHATSKIKKQSDLFRIRTLGFRGEALPSIASISRLTLKTATKGEIHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +  +G KI     ++   GT V V +LFF  PARL ++KS Q E   I DVI R+++A+
Sbjct: 123 LLIANGGKIEKEEAISTPIGTKVSVENLFFNTPARLKYMKSLQAELAHIIDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         ++   +  G+  + ++ + G       VE++    +  + GY  +
Sbjct: 183 PEIAFTLINDSR---ELTKTAGKGDLRQALAGIYGVTTAKKMVEISNADLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + N I  +I  ++ ++ +   ++ +    S+  +    +T LP   
Sbjct: 300 HPTKQEVRISKEKELMNLISSAIADSLREQELIPDALENLAKTSTNKKQKFEQTQLPLKQ 359

Query: 360 TSL--TNTQEKLFLQENRLSTNDLLP---------------------------------- 383
           ++L    TQ   FL+E  +S                                        
Sbjct: 360 SNLYYDKTQNDFFLKEMTVSEASSEFTVVDKAVNITDNVSGHSSVKYAQRQMRTCENKEH 419

Query: 384 --------SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                         S   + +E  E + +       Q+H  Y+ +Q   GL I+DQHAA 
Sbjct: 420 PSLAMTDKQQKRQLSRIVESLENEEKSTFPELEYFGQMHGTYLFAQGEGGLYIIDQHAAQ 479

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+ +E  R        + Q LL P + +    +   + E    L+ +GI  E +G N  
Sbjct: 480 ERVKYEYYRDKIGEVDNSLQQLLVPYLFEFPANDFMTLQEKMSILNEVGIHLENYGENTF 539

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +RE P  L +K I   + ++ D ++ ++   +++     +   M+C  SI++   +   
Sbjct: 540 ILREHPIWLQEKEIESAVYEMCDMLLLTNEV-SIKKYRAELAIMMSCKRSIKANHTLDDY 598

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 SARNLLIQLSQCKNPYNCPHGRPVLVNFTKADMEKMFRR 637


>gi|315221511|ref|ZP_07863431.1| DNA mismatch repair protein [Streptococcus anginosus F0211]
 gi|315189345|gb|EFU23040.1| DNA mismatch repair protein [Streptococcus anginosus F0211]
          Length = 688

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 179/636 (28%), Positives = 300/636 (47%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KELIENS+DA ++++   I   G    Q+ DNG 
Sbjct: 43  KIIELPENLANQIAAGEVIERPSSVVKELIENSIDAGATQIIVEIEEAGLRSIQVIDNGE 102

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+ +A++RH TSKI    D   I T GFRGEALPSI +VS LT+ +       G 
Sbjct: 103 GIEHEEVSLALRRHATSKIKKQADLFRIRTLGFRGEALPSIASVSRLTIETATSSGAHGT 162

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G ++ ++ P +   GT ++V DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 163 LLIAQGGEVETLEPSSCPRGTKIKVEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 222

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         +    +  GN  + I+ + G       +E+     +  + GY  +
Sbjct: 223 PEVAFTLVNDGKEMTR---TAGTGNLRQAIAGIYGLTTAKKMIEILASDLDFEVSGYISL 279

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNV
Sbjct: 280 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIRIDPYLADVNV 339

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  ++ ++ +   ++ +    +    +   +T LP   
Sbjct: 340 HPTKQEVRISKERELMVLISQAISASLKEQDLIPDALENLAKSTINRANKPEQTSLPLKE 399

Query: 357 ----------------KYATSLTNTQEKLFLQENRLSTN--------------------- 379
                           + + +  + +E   L +    T+                     
Sbjct: 400 NRLYYDKERNDFFVKPQVSEAQPSFEESARLDQQSADTDELNSKAASVKFAERQSPSYNQ 459

Query: 380 -DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
            D    D  +     D +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 460 LDHPELDQASLERALDKLNGEETSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQERV 519

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   + +    L  +G+  E +G N   +R
Sbjct: 520 KYEYYREKIGDVDASQQQLLVPYIFEFPADDMLRLKQRMTLLEEVGVFLEEYGTNQFILR 579

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  L ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 580 EHPIWLKEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 638

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            L+ ++ +  N   C HGRP  +    SD+ K+F R
Sbjct: 639 DLIFQLSQCDNPYNCPHGRPVLVNFTKSDMGKMFRR 674


>gi|326403389|ref|YP_004283470.1| DNA mismatch repair protein MutL [Acidiphilium multivorum AIU301]
 gi|325050250|dbj|BAJ80588.1| DNA mismatch repair protein MutL [Acidiphilium multivorum AIU301]
          Length = 582

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 219/596 (36%), Positives = 334/596 (56%), Gaps = 18/596 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L    IN+IAAGE+IERP+ A+KEL+EN+LDA + R+   I GGG    ++TD+G
Sbjct: 1   MPIRRLDPTTINRIAAGEVIERPAAAVKELVENALDAGARRIGVTIEGGGIGRIEVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   E+P+A++RH TSK++D+    I T GFRGEALPSIGA   LT+ SRP   ++ A
Sbjct: 61  HGIPEAELPLAIERHATSKLTDEALVRIATLGFRGEALPSIGAAGRLTVTSRPAGQDSAA 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G  +  V PVA   GT V V DLF   PAR  FL+S   E     D +R +A+A 
Sbjct: 121 RIVVDGGAVREVEPVAGPVGTCVTVEDLFHATPARRKFLRSAGAEAGSCADAVRHLALAA 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F+ +   +  + +       +  ER++ + G       +E+     E+ L+G+   
Sbjct: 181 PAVGFSLTIDGAASFDLPP----QDRRERVAAIYGRADAEKLLEIEAVREEVALRGFISP 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            +  R  A   ++ +NGR V+D  +   +R AY E IP GR+P+  L LEI    +DVNV
Sbjct: 237 ASLTRAAARHQHMVVNGRPVRDPLLRMALRLAYRERIPAGRHPLAALWLEIPAEMLDVNV 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RF  P  +R+ +I ++Q+A+       + + +   +S      A  + +P+Y 
Sbjct: 297 HPAKAELRFAAPDAVRSLMIGAVQRALAT----PADLAAAPSVSMPRTSWAASSPMPRYP 352

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            + +         E        L   D   +     V       Y LG   AQ+   YI+
Sbjct: 353 QAESRAARGFAEAE--------LRGLDLPPARVAPEVLPESRPDYPLGTPIAQVFDTYIL 404

Query: 420 SQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +Q+ DG LV+VDQHAAHERL   ++R + +S  I +Q LL P +++L   + A ++   E
Sbjct: 405 AQSGDGTLVLVDQHAAHERLTEIRLRAERDSGAIPAQALLAPSVVELPAEDIARLLGAAE 464

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG++ E FGP A+ +R +PA L+K +   L RD+ D + +S T   L+ +++ +L 
Sbjct: 465 RLAGLGLEIEAFGPGAVLVRAVPAALAKADPAALARDVADTLAESGTATALEAKLDAVLI 524

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            MAC+ S+R+GR++   EM  LLR ME  P +  C HGRPT ++L   D+E++FGR
Sbjct: 525 RMACHRSVRAGRRLAFAEMEALLRAMETTPLAQTCPHGRPTVLRLSRGDLERMFGR 580


>gi|253754700|ref|YP_003027840.1| DNA mismatch repair protein MutL [Streptococcus suis BM407]
 gi|251817164|emb|CAZ54885.1| DNA mismatch repair protein MutL [Streptococcus suis BM407]
          Length = 645

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 178/632 (28%), Positives = 307/632 (48%), Gaps = 44/632 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++E  +   G    QITDNG G
Sbjct: 4   IIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VSH+ + +    +  G  
Sbjct: 64  IAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  I    PV+   GT + V DLF+  PARL +++S+Q E + I DV+ R+++A+P
Sbjct: 124 LEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKYVRSQQAELSHIVDVVNRLSLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G   + IS + G       VE+  +  +  + GY  +P
Sbjct: 184 EIAFVLVNEGR---ELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ +EIDP   DVNVH
Sbjct: 241 ELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   I ++I +A+ ++ +   ++ +    S+  +  A +  LP    
Sbjct: 301 PTKQEVRISKEKELMTLIREAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREP 360

Query: 361 -----------------------------------SLTNTQEKLFLQENRLSTNDLLPSD 385
                                               + N    +   E +   ++     
Sbjct: 361 KIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPVENRPTSVQFAERQSVESEDQEHP 420

Query: 386 DPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           + +  E     D ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E 
Sbjct: 421 NLSAKELAKLADKLDREETSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYEY 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+       ++Q LL P I +  + +   ++   + L ++G+  E +G N   +RE P 
Sbjct: 481 YREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPI 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            + ++ I   + ++ D ++ +    +++     ++  M+C  SI++   +       LLR
Sbjct: 541 WMKEEEIESGIYEMCDMLLLTDQV-SIKQYRAELVIMMSCKRSIKANHALDDYSARDLLR 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRR 631


>gi|259502856|ref|ZP_05745758.1| DNA mismatch repair protein HexB [Lactobacillus antri DSM 16041]
 gi|259169223|gb|EEW53718.1| DNA mismatch repair protein HexB [Lactobacillus antri DSM 16041]
          Length = 675

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 180/660 (27%), Positives = 305/660 (46%), Gaps = 71/660 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L++ + +QIAAGE+IERP+  +KEL+ENSLDA+S RV+ ++   G    ++ D+G 
Sbjct: 3   QIHELNDILADQIAAGEVIERPASIVKELVENSLDAQSQRVDIIVENAGLDSIRVIDDGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +A +RH TSKIS   D   + T GFRGEALPSI +V+ + L +       G 
Sbjct: 63  GIAADDVELAFKRHATSKISSRHDLFRVQTMGFRGEALPSIASVADVELTTAVAGATAGR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G ++ + +P     GT V V +LFF  PARL +LKS   E   ITD+I R+A+A 
Sbjct: 123 LVHLRGGELVANQPAPARRGTDVRVTELFFNTPARLKYLKSPHTELARITDIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F+F+       ++   + NGN  + I+ + G       + +    N+  + G+  +
Sbjct: 183 PQVAFSFTHNGK---ELFRSAGNGNLQQVIATIYGIQAGRKMLAIQGTDNDFAVTGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R V++  +   I   Y   + +GRYPV VL +E+DP  VDVNV
Sbjct: 240 PELTRASRQYITIMINHRYVRNYALTKAIIQGYESKLMVGRYPVAVLNIELDPVLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------------SVLSKKMISS 344
           HPAK  +R      +   I Q+I++ I ++ +                  + L++++  +
Sbjct: 300 HPAKREVRLSKEDQLAKLIAQTIRQRIARENLIPDVDADRFSPQPDPDLVNDLNRRLTEA 359

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN------------------------- 379
                  +   P+  +S             +   +                         
Sbjct: 360 AVPYGVHQAGTPESPSSTAKAASPQPTSTAKAGADTVDSQIPAPVIIHQSSQLNSARMKE 419

Query: 380 ------------------DLLPSDDPTYSEDNDPVE-------ESEATHYQLGIACAQIH 414
                              L  +D  T     + +E             +       Q+ 
Sbjct: 420 FDTRYQDEKLPTGISDQGALQTADQQTPPAKAENLELDVHDKSNQATGRFPDLQYIGQLQ 479

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             ++++Q +DGL IVDQHAA ER+ +E+ RQ+        QT L P +++    +   I 
Sbjct: 480 GTFLLAQASDGLYIVDQHAAQERINYERYRQEIGQVSADQQTFLVPLVLNYSTVDALTIT 539

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            H + L  +G++ E FG N+  +R  P    +      +R++ID +I      T+Q    
Sbjct: 540 NHADVLASVGLRLEHFGQNSFLLRSHPTWFKEGQEEDTVREMIDWLIKDGK-LTVQQFRM 598

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                M+C  +I++ R +   E   LL+ + +  N   C HGRP  +     D+EK+F R
Sbjct: 599 KTAIMMSCKRAIKANRHLDDREARALLKRLPQCENPFNCPHGRPVTVHFNDRDLEKMFKR 658


>gi|121533676|ref|ZP_01665503.1| DNA mismatch repair protein MutL [Thermosinus carboxydivorans Nor1]
 gi|121307667|gb|EAX48582.1| DNA mismatch repair protein MutL [Thermosinus carboxydivorans Nor1]
          Length = 602

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 172/605 (28%), Positives = 311/605 (51%), Gaps = 19/605 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L E   N+IAAGE++ERP+  +KEL+ENS+DA+S  +E  I  GG ++ +++D+G 
Sbjct: 4   TIRVLDETTANKIAAGEVVERPASVVKELVENSIDAQSRSIEVEIVDGGINYIRVSDDGI 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM++ +  +A+ RH TSKI   DD  NI++ GFRGEALPSI AVS  TL +R      G 
Sbjct: 64  GMSAADARLAILRHATSKIRTADDLYNINSLGFRGEALPSIAAVSRFTLTTRLHAEPIGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I G  ++ +R    + GT V V DLFF  PAR  FLK+   E+  I D++ ++A+A 
Sbjct: 124 YIEIQGGLVTDIREAGGSVGTTVTVSDLFFNTPARRKFLKTPATESAYIHDILGKIALAR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+      K    ++   +  G   +  + + G       + L+    +I + GY G 
Sbjct: 184 PDVAIKLINNKR---QVLATTGTGRLFDAAASLYGYKAATELLPLDYTDGDIHITGYVGK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   + +       +NGRT+ ++ +   +  AY   +P   +P+ ++ + I   +VDVNV
Sbjct: 241 PHLLKSSRQWQTWTVNGRTISNRMLSKALDNAYHSLLPKNGFPLAIIQIVIPSDKVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK----KGISTSSVLSKKMISSFHQDNAPKTH- 354
           HP K+ ++F +   +   + +++  A+      + I+ +  L         ++       
Sbjct: 301 HPQKNEVKFSDEQAVFRAVYKAVLSALETAKGPQQIAATVSLPASSPGKIAEEFKRTPEN 360

Query: 355 --LPKYATSLTNTQEKLFLQE--NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
             +P     L  +   ++ +E     +  + + S     +      +++      +    
Sbjct: 361 NVVPAALFMLKESNAPVWREETLPVTTVRETMQSATELPAIRYGLHQDTHDRSSLVLRVL 420

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            QI+  +I++  +DGL I+DQHAAHER+++E +    ++ ++ +Q LL P ++D  E + 
Sbjct: 421 GQINDCFIVAAGSDGLYIIDQHAAHERILYEHL--AQSAGRVPAQQLLVPRVVDFDERDI 478

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
            LI++++   + LG + E+ GP ++ + E+P+ +    I  LLR+I+  + +  T    +
Sbjct: 479 DLILQNEPLFYELGFRLEQIGPRSMRLLEVPSDIPGTEIEGLLREILSALHNMQTPKAHE 538

Query: 531 DRIENI-LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
             I +I L T AC  ++++G  +   +M  L+ E+        C HGRP  ++   +++ 
Sbjct: 539 --IRHIFLQTAACRSAVKAGENLNMRQMQALIDELCSTNRPYTCPHGRPAIVRFTSAELA 596

Query: 590 KLFGR 594
           K+F R
Sbjct: 597 KMFKR 601


>gi|87311735|ref|ZP_01093850.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645]
 gi|87285519|gb|EAQ77438.1| DNA mismatch repair protein [Blastopirellula marina DSM 3645]
          Length = 637

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 185/639 (28%), Positives = 329/639 (51%), Gaps = 48/639 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR+L   ++N+IAAGE+IERP+  +KEL+ENS+DA ++RV+  I  GG    +I DN
Sbjct: 1   MPTIRQLPTSVVNKIAAGEVIERPASVVKELMENSVDAGATRVDVTIEHGGSELVRIADN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++ ++V  H TSKI  +DD  ++ T GFRGEAL SI  VS   L SR P+++ 
Sbjct: 61  GCGIAEDQLALSVASHATSKILDADDLFHVGTLGFRGEALASIAEVSQFRLRSRIPESDA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            A++ I+G ++  V P     GT +EVR+LFF  P R  FL++ Q E   +++   R+A+
Sbjct: 121 AAEMYINGGQLVEVTPCGAAVGTTIEVRNLFFNTPVRKKFLRTTQTEFGHLSEAFTRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P V FT        Y +     + N+ ER++   G++   + + ++   + I L GY 
Sbjct: 181 AFPHVHFTLKHGARQIYDL---PPSDNWRERLAAFFGDEIATHLIPIDNADDTIRLSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P FNRGN    ++F+NGR ++D+ +   +  AY   +  GRYP+  L L++ P  VDV
Sbjct: 238 ADPKFNRGNNKMQFLFLNGRHIRDRALQHALSEAYRGLLLTGRYPIAFLRLQMPPEMVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS----------------------- 334
           NVHP K  +RF++   I + ++ +++       ++ +                       
Sbjct: 298 NVHPTKLEVRFQDSGRIYSQLLGTLRTKFLSTDLTATYKPVDSDELHGNNRHGAASGGGN 357

Query: 335 ----------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                              +K  + +  +D   +  + +       +Q    L+ +R   
Sbjct: 358 INGHDVETAARMREELVAWAKGQLPADDEDLRERRSVQESLDLDFRSQRHPPLELSRFDR 417

Query: 379 NDLLPSDDPTYSEDNDPVEESEATHYQLGIACA---QIHQNYIISQTTDGLVIVDQHAAH 435
           + L  +   +  +  +                    Q+H+ Y++++T +G+V++DQHA H
Sbjct: 418 DALAAASSRSNGQPGEGARLDAPHETPPQPTPGRALQLHRRYLVTETPEGMVVIDQHALH 477

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+++E+ R+   + ++ +Q LL PE + L   E + +M+  E L +LG + E FG + I
Sbjct: 478 ERILYEEFREKALAGRLETQNLLAPETMHLSPSEFSAVMQAQEPLAQLGFQVESFGGDTI 537

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            I   PAIL ++   + LR+IID ++        +D ++ +L  M+C  ++++G ++ + 
Sbjct: 538 LISSYPAILDRRKPSETLREIIDHLVGDGKRPDRRDLLDELLHMMSCKAAVKAGDRLSAE 597

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E++ LL       ++  C HGRPT +     ++++ F R
Sbjct: 598 EIDALLELRHLCQDAHHCPHGRPTSLVFTKEELDRRFER 636


>gi|223933913|ref|ZP_03625875.1| DNA mismatch repair protein MutL [Streptococcus suis 89/1591]
 gi|223897415|gb|EEF63814.1| DNA mismatch repair protein MutL [Streptococcus suis 89/1591]
          Length = 645

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 177/632 (28%), Positives = 304/632 (48%), Gaps = 44/632 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++E  +   G    QITDNG G
Sbjct: 4   IIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VSH+ + +    +  G  
Sbjct: 64  IAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  I    PV+   GT + V DLF+  PARL +++S+Q E + I DV+ R+++A+P
Sbjct: 124 LEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKYVRSQQAELSHIVDVVNRLSLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G   + IS + G       VE+  +  +  + GY  +P
Sbjct: 184 EMAFALVNEGR---ELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ +EIDP   DVNVH
Sbjct: 241 ELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   I ++I +A+ ++ +   ++ +    S+  +  A +  LP    
Sbjct: 301 PTKQEVRISKEKELMTLIREAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREP 360

Query: 361 -----------------------------------SLTNTQEKLFLQENRLSTNDLLPSD 385
                                                 N    +   E +   ++     
Sbjct: 361 KIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPAENKPTSVQFAERQSVESEDQEHP 420

Query: 386 DPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           + +  E     D ++    + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E 
Sbjct: 421 NLSAKELAKLADKLDREATSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYEY 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+       ++Q LL P I +  + +   ++   + L ++G+  E +G N   +RE P 
Sbjct: 481 YREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPI 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       LLR
Sbjct: 541 WMKEEEIESGIYEMCDMLLLTDQV-SIKQYRAELAIMMSCKRSIKANHALDDYSARDLLR 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRR 631


>gi|326202165|ref|ZP_08192035.1| DNA mismatch repair protein MutL [Clostridium papyrosolvens DSM
           2782]
 gi|325987960|gb|EGD48786.1| DNA mismatch repair protein MutL [Clostridium papyrosolvens DSM
           2782]
          Length = 664

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 193/664 (29%), Positives = 320/664 (48%), Gaps = 75/664 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   N+IAAGE++E+P+  +KEL+ENS+DA ++ +   I  GG S+ +ITDNG 
Sbjct: 3   RIIVLDENTSNKIAAGEVVEKPASVVKELVENSIDAGATSISVDIKNGGISYIKITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++ +A +RH TSKI  ++D  ++ T GFRGEAL SI +V+ + LM++   +  G 
Sbjct: 63  GMDEDDVEIAFERHATSKIKRAEDLDSVITMGFRGEALASIASVASVELMTKTAASTYGM 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G     VR      GT   ++DLFF  PAR  FLK +  E   I+D I R+A+  
Sbjct: 123 YVHIRGGVFQDVRQTGCPVGTTFIIKDLFFNTPARYKFLKKDSTEAGYISDTISRIALGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF  +   + +  +     N +    I  + G++ I + V +     +I + GY G 
Sbjct: 183 PDISFKLT---NGKTTLIHTPGNNDLKSVIYSIYGKELIKDLVAVEYADEKIKISGYVGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   ++IN R V+ K +  ++  A+   +   R+P  VL ++I+P  VD NV
Sbjct: 240 PEAARSNRNYQSLYINKRYVKSKMVSYSVEQAFTSILMKNRFPFFVLNIDINPVLVDANV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------------ 347
           HPAK+ +RF + + +   I  ++  A+   G   + V          +            
Sbjct: 300 HPAKTEVRFADESNLSRTIYMAVSNALTTGGSLFNPVSVPNKDRELFKFTGNSQNKVEYL 359

Query: 348 -------------------------DNAPKTHLPKYATSLTNTQ-----------EKLFL 371
                                    +   KT + K +TSL   Q           E+  +
Sbjct: 360 QKEIELNKQEDYKKAEEIRLFTKALEPLAKTDVNKVSTSLEKPQTDTSSFTFTKSEEYNV 419

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESE---------------------ATHYQLGIAC 410
           ++ +  T ++        + +++ ++E++                               
Sbjct: 420 RQPQEVTVEVKQEKTTELNNNSEVIKEADFSEEVAAVLSEDDGEIHTENVHPELADMKYI 479

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q    YI+ Q+ D LV+VDQHAAHER+I+EK+R  F+S + T+Q LL P +I L   E 
Sbjct: 480 GQAFSTYILLQSNDELVMVDQHAAHERIIYEKLRVKFDSQENTTQLLLEPVVIQLQPFEL 539

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             +    E L  +G   E FG N+I IR IP ++   +   +  ++  ++ +S    +  
Sbjct: 540 DAVKSKHELLKGIGFVFEDFGNNSIIIRGIPYMVGDCSPRDIFIELTQKLQESIRPVSTP 599

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              + I+ T+AC  +I++ +K+   E+++LL E+ K      C HGRPT I+L   +IEK
Sbjct: 600 -LADEIIHTIACKAAIKANKKLDEKEVHQLLIELSKTGRRYTCPHGRPTVIRLTKYEIEK 658

Query: 591 LFGR 594
           +F R
Sbjct: 659 MFKR 662


>gi|163790797|ref|ZP_02185223.1| DNA mismatch repair protein [Carnobacterium sp. AT7]
 gi|159873977|gb|EDP68055.1| DNA mismatch repair protein [Carnobacterium sp. AT7]
          Length = 659

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/657 (29%), Positives = 319/657 (48%), Gaps = 69/657 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS+ + NQIAAGE+IERP+  +KELIEN++DAESS+++ +I   G    QI DNG 
Sbjct: 3   KIQELSDVLANQIAAGEVIERPASVVKELIENAIDAESSQIDILIEEAGLKKIQIIDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+  A +RH TSKI   DD   I T GFRGEALPSI +VS ++L +       G 
Sbjct: 63  GIEPEEVQNAFKRHATSKIYSRDDLFRIRTLGFRGEALPSIASVSEVSLETST-GGTRGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G KI   +      G+ + V +LFF  PARL ++KS Q E + +TD++ R+AI++
Sbjct: 122 YLSLKGGKIIEEKSNEARKGSKITVENLFFNTPARLKYVKSLQTELSNVTDIVNRLAISH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F      +   ++   + NG+  + ++ + G        E+N++  +  + G+  +
Sbjct: 182 PRIAFRLINDGN---QLLRTAGNGDLKQTLAGIYGVAAAKKMREINKEDLDFRVSGFISL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + INGR +++  +   I   Y   + +GR+P+V + +E+DP  VDVNV
Sbjct: 239 PELTRASRNYISIIINGRYIKNYLLNKAIIAGYRSKLMVGRFPMVAIEIEMDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--------------VLSKKMISSF 345
           HP K  +R      +   I  +IQ  ++K+ +   +                ++++   F
Sbjct: 299 HPTKQEVRISKEKELMQLIELAIQDCLSKEQLIPDALENLSFKKKINRPIEQNEQITFEF 358

Query: 346 HQD-----------------------NAPKTHLP-KYATSLTNTQEKLFLQENR------ 375
            Q+                        + +   P +  ++  +  E  FL+E        
Sbjct: 359 QQETNIENKSEENEETESTHLARESYYSHRQSTPFEKESNYVDEVEPFFLKEKERESLIS 418

Query: 376 -LSTNDLLPSDDPTYSEDNDPVEESEAT-----------------HYQLGIACAQIHQNY 417
            +   +       T SE  D  +ES                     +       Q+H  Y
Sbjct: 419 GVPEEEASDVPIETVSELVDYHQESPLKTADKLMKKHAKVKESIGQFPTLEYVGQMHGTY 478

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           + +Q   GL I+DQHAA ER+ +E  R+         Q LL P ++D    +   I E++
Sbjct: 479 LFAQNETGLYILDQHAAQERIKYEYFRKKIGEVSTDLQDLLVPIMLDYPNSDAIKIKENN 538

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           + L  +GI  E FG N+  +R  P   ++     ++R++ID ++D   + ++    E   
Sbjct: 539 DALEMVGIFLEPFGQNSFLLRSHPVWFNQGEEETIVREMIDLLLDHG-SVSVAKFREATA 597

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             M+C GSI++   +   E   LLR+++K  N   C HGRP  I     D+EK+F R
Sbjct: 598 IMMSCKGSIKANHYLNDAEARALLRDLKKTENPYNCPHGRPVLIHFTNKDMEKMFKR 654


>gi|326693691|ref|ZP_08230696.1| DNA mismatch repair protein MutL [Leuconostoc argentinum KCTC 3773]
          Length = 665

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 182/651 (27%), Positives = 315/651 (48%), Gaps = 62/651 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+EN++DA +++++ V+   G+S  ++ DNG 
Sbjct: 3   KIHELSNLLANQIAAGEVIERPASVVKELVENAIDAGATQIDVVVENAGQSLIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A  RH TSKI+D  D  NI + GFRGEALPSI A++ +TL +       G 
Sbjct: 63  GIDPEDVPLAFTRHATSKITDRHDLFNIVSLGFRGEALPSIAAIADVTLNTTTETAPAGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G K   V P     GT++ VRDLF+  PARL +LK  Q E + ITD++ R+A+AY
Sbjct: 123 MYHIKGGKEVQVTPANGRRGTVISVRDLFYNTPARLKYLKRPQTELSRITDIMNRLALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++FT +        +   + NGN  + I+ + G D     + +  + +   + G+  +
Sbjct: 183 TNIAFTVTADNRP---LLKTTGNGNQQQVIAAIYGRDVAQKMLAIAGEDDTFNITGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG+     V INGR +++  + + +   Y   + +GR+P+ V+ +  DP  +DVNV
Sbjct: 240 PELTRGSREYLTVLINGRFIKNFAVSNAVIHGYGSKLMVGRFPMGVININTDPLLIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---VLSKKMISSFHQDNAPKTHLP 356
           HP KS IR      +   ++++I+  + ++ +   +   +  ++ + + H    P+ H  
Sbjct: 300 HPQKSEIRLAKEDELSALLVETIKARLAQENLIPDAYENLYGQQSVITAHDRPTPQQHPT 359

Query: 357 KYATSLTNT-----------------------------------------------QEKL 369
           + A  +T +                                               +  L
Sbjct: 360 QRAPWVTTSDTVVTQPIEPAKSTETAVDSPARVIHITNRTQLTSDAVQAFSEKYANEPAL 419

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEE------SEATHYQLGIACAQIHQNYIISQTT 423
            + E     N +  S     +     V+E      +  + +       Q+H  ++ +Q  
Sbjct: 420 TVFEQPAVVNQVTESAITYQAPTEKAVQETLDVTPTRPSGFPTLAYIGQMHGTFLFAQNE 479

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            GL ++DQHAA ER+ +E  RQ         Q LL P  ++    +   I ++  DL  +
Sbjct: 480 TGLFLIDQHAAQERVNYEYYRQIIGDVSADQQRLLVPITLNYATSDMLKIADYAADLTAV 539

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G+  E FGPN + +RE P   +K+ + + +R++ID ++      T+ +  E     M+C 
Sbjct: 540 GLHLETFGPNTLIVREHPTWFAKEQVAETIREMIDWLLRDGH-LTVAEFRERTAIMMSCK 598

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +I +   +   +   LL  + +  N   C HGRP   +  L+++EK+F R
Sbjct: 599 RAIPANMHLSDSQARTLLETLSQAENPYNCPHGRPVLTQFTLTEMEKMFKR 649


>gi|296117465|ref|ZP_06836052.1| DNA mismatch repair protein MutL [Gluconacetobacter hansenii ATCC
           23769]
 gi|295975986|gb|EFG82777.1| DNA mismatch repair protein MutL [Gluconacetobacter hansenii ATCC
           23769]
          Length = 633

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 212/624 (33%), Positives = 341/624 (54%), Gaps = 36/624 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LSE+++N+IAAGE+IERP+ A+KEL+EN+LD+ + R+   +  GG    ++ D+G G
Sbjct: 13  IRRLSEQVVNRIAAGEVIERPAAALKELVENALDSGAQRISVALLHGGIERIEVIDDGCG 72

Query: 63  MTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++ +AV+RHCTSK+SD+    I T GFRGEALPSIGA + L + SR     T   I
Sbjct: 73  MTPDDLRLAVERHCTSKLSDETLVRIATLGFRGEALPSIGAAARLNVTSRTRGAPTAWSI 132

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G ++   RP A   GT V V DLFF  PAR  FLKS +VE+    + +RR+A++ P 
Sbjct: 133 RVEGGRVDEPRPCAGVVGTCVVVEDLFFATPARRKFLKSARVESGHAENTVRRLALSAPH 192

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           V+F     +     +       +   R + ++     +  + +  +  ++ L GY   P+
Sbjct: 193 VAFRLQFDQRVVLDLPA----QDMAARAAAILDAGQADGLIPVEAERGDLRLSGYICAPS 248

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            +R  AN   + +NGR V D  + + +R AY   +  GR+ VV L L+I P QVDVNVHP
Sbjct: 249 VHRATANGQLLLVNGRPVVDPVLRTAVRVAYRNVMEHGRHAVVALSLQIPPEQVDVNVHP 308

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAIN-------------KKGISTSSVLSKKMISSFHQD 348
           AK+ +R+ +   +R  +I ++ +A+              +   +  + +      +    
Sbjct: 309 AKTELRYADAAAVRALVIGALGRALGIGAGVAGVRPGLLQSRPAGGARIWYPPEPASAPP 368

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE----------- 397
            +P    P              + E RL   D+ P            +            
Sbjct: 369 VSPVQMSPFPPDGDDGPPMAEGVAERRLPLMDIAPGARQVVRWSEADIPAVQGAVSSPAP 428

Query: 398 -ESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
               A  + LG A AQ+   YI+++T  G LV+VDQHAAHERL  E++R  +   +I +Q
Sbjct: 429 NPEPAADFPLGAAVAQVLGTYILAETARGELVLVDQHAAHERLTHERLRAQYLGGEIRAQ 488

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PE++++  G+  L+M   + L  LG++ + FG +A+ +R +PA+L   +   +LRD
Sbjct: 489 RLLLPEVVNMPRGQADLLMSFADTLSALGLEIDAFGGDAVMVRTVPALLGGGDAAAMLRD 548

Query: 516 IIDEIIDSS-----TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           + +E+ +           +  R++ I+A MAC+GS+R+GR++   EMN LLR+ME+ P +
Sbjct: 549 LAEELAEDELLAPAQAQAVDGRLDAIIARMACHGSVRAGRRLTHEEMNALLRDMERTPRA 608

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C+HGRPT++KL+  D+E++FGR
Sbjct: 609 GTCSHGRPTWLKLEKGDLERMFGR 632


>gi|322390454|ref|ZP_08063974.1| DNA mismatch repair protein HexB [Streptococcus parasanguinis ATCC
           903]
 gi|321142853|gb|EFX38311.1| DNA mismatch repair protein HexB [Streptococcus parasanguinis ATCC
           903]
          Length = 686

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 182/635 (28%), Positives = 308/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++   I   G    +ITDNG 
Sbjct: 42  QIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGASQIVVEIEEAGLKSIRITDNGE 101

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +A++RH TSKI    D   I T GFRGEA+PSI +VS LTL++       G 
Sbjct: 102 GIAHDEVALALRRHATSKIKSQADLFRIRTLGFRGEAMPSIASVSILTLLTAQEGAAHGT 161

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I  V P     GT + V DLFF  PARL +LKS+Q E + I D++ R+++A+
Sbjct: 162 KLVAKGGEIEEVEPATSPVGTKITVEDLFFNTPARLKYLKSQQAELSHIVDILNRLSLAH 221

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         K    +  GN  + I+ V G       V +  +  +  + G+  +
Sbjct: 222 PEIAFTLINDGKEMTK---TAGTGNLRQAIAGVYGLASAKKMVAIENRDLDFEVTGFVSL 278

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +FINGR +++  +   I   Y   + +GR+P+ ++ ++IDP   DVNV
Sbjct: 279 PELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAIINIKIDPYLADVNV 338

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  A+ ++ +   ++ +    +    +   +T LP   
Sbjct: 339 HPTKQEVRISKERELMALISQAIANALKEQDLIPDALENLAKSTIRRTEKPVQTTLPLKE 398

Query: 357 ------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS-------------- 390
                       K    + + Q  L  +    ST+   P + PT +              
Sbjct: 399 NRLYYDRESQDFKLRPEVADPQRPLTDEVTADSTSQENPVEKPTSAIKFAERKTVVYDEL 458

Query: 391 -----------EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                      +  D ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 459 DHPELDLASLDKAYDKLDGEEHSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 518

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E+ R+       + Q LL P I +    +   + +    L  +G+  E +G N + +RE
Sbjct: 519 YEEYRESIGDVDGSQQQLLVPYIFEFPADDLIRLQQRKHLLEEVGVYLEEYGANQLILRE 578

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 579 HPIWMKEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHTLDDYSARD 637

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L+ ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 638 LIYQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 672


>gi|330994147|ref|ZP_08318075.1| DNA mismatch repair protein mutL [Gluconacetobacter sp. SXCC-1]
 gi|329758614|gb|EGG75130.1| DNA mismatch repair protein mutL [Gluconacetobacter sp. SXCC-1]
          Length = 620

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 220/613 (35%), Positives = 352/613 (57%), Gaps = 26/613 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LSE+++N+IAAGE+IERP+ A+KEL+EN++D+ + R+   +  GG     ++D+G G
Sbjct: 12  IRRLSEQVVNRIAAGEVIERPAAALKELVENAVDSGARRIHIRLDRGGIDRIDVSDDGCG 71

Query: 63  MTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M+ +++ +AV+RHCTSK+ D+   +I T GFRGEALPSIGA + L++MSR    ++   I
Sbjct: 72  MSPDDLLLAVERHCTSKLRDETLVHISTLGFRGEALPSIGAAARLSVMSRQAGADSAWSI 131

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G  +S+  P A  PGT V V DLFF  PAR  FLKS +VE+    +V+RR+A++ P 
Sbjct: 132 RVEGGVVSTPEPCAGAPGTRVLVEDLFFATPARRKFLKSPRVESGHAENVVRRLALSAPH 191

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           ++F           +       +   R++ ++     +  + +  +  ++ L GY   P+
Sbjct: 192 IAFRLEFDDRLILDLPA----QDRAARVAAILESGDADGLLAVEGQRGDLKLSGYICAPS 247

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            +R  AN   + +NGR V D  + + +R AY   +  GR+ VV L LEI P QVDVNVHP
Sbjct: 248 VHRATANGQMLLVNGRPVVDPVLRTAVRVAYRNVMEHGRHAVVALSLEIPPEQVDVNVHP 307

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAI--------------NKKGISTSSVLSKKMISSFHQ 347
           AK+ +R+ +   +R  +I ++ +A+                +G S + +      ++   
Sbjct: 308 AKTELRYADSAAVRALVIGALGRALGTGAGVAGVRPDLIQSRGSSPARIWYPPERNADAA 367

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           D + +   P       +     F  E+ L    L  +        +D    + A  + LG
Sbjct: 368 DLSTRLARPLVPARPDSGLPSGF-AESSLPLAGLPAARQTAPDTLHDQAATTAAMAHPLG 426

Query: 408 IACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
            A AQ+   YI+SQT DG LV+VDQHAAHERL  E +R+ +   +I +Q LL PE++DL 
Sbjct: 427 AAVAQVLGTYIVSQTADGALVLVDQHAAHERLTHEILREQYMGGEIRAQRLLLPEVVDLP 486

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-- 524
             +  +++     L RLG++ E FG  A+ +R +PA+L K+N   +LRD+ +E+      
Sbjct: 487 ARQVDVLLSFGAALARLGVEIEPFGGTAVLVRAMPALLGKENPGGMLRDLAEELEADDLA 546

Query: 525 ---TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
                  L  R++ ++A MAC+GS+R+GR++   EMN LLR+ME+ P +  C+HGRPT++
Sbjct: 547 SPAQADALDARMDAVIARMACHGSVRAGRRLTHEEMNALLRDMERTPRAGTCSHGRPTWL 606

Query: 582 KLKLSDIEKLFGR 594
           KL+ +DIE++FGR
Sbjct: 607 KLEKADIERMFGR 619


>gi|322436381|ref|YP_004218593.1| DNA mismatch repair protein MutL [Acidobacterium sp. MP5ACTX9]
 gi|321164108|gb|ADW69813.1| DNA mismatch repair protein MutL [Acidobacterium sp. MP5ACTX9]
          Length = 659

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 195/659 (29%), Positives = 316/659 (47%), Gaps = 69/659 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS+++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+   +  GG+   +I DNG 
Sbjct: 3   RIRILSDQVANQIAAGEVVERPASVVKELLENSLDAGATRIRIEVEAGGRKLIRIVDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSK+  SDD  +I T GFRGEALPSI +V+ L+L +R  ++++G 
Sbjct: 63  GMGKDDALLAFERHATSKLRTSDDLLSIATLGFRGEALPSIASVARLSLETRAAEDDSGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I+G  I +V    +  GT + +RDLFF  PAR  FLKSE  E + I  ++   A+A+
Sbjct: 123 HIEIAGGNILTVEDAGLPIGTTIAIRDLFFNTPARRKFLKSESTELSHIAALVTHYALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN---------- 229
               F      S    +       +  +R+ Q+ G D     +    + +          
Sbjct: 183 FNRHFEL---HSTTQALLVAPAVASAGDRLFQIFGRDTAALMIPTTAEMDFTRAGLPEPP 239

Query: 230 --------------EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                          + + G+   P   + N N  YVF+N R ++D+ +L  +  AY   
Sbjct: 240 PWKRELDYEAPDPGFLRISGFVSKPELQKLNRNSVYVFVNQRLIRDRLVLHALTEAYRNI 299

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS- 334
           IP   +PVV+L LE+ P +VDVNVHPAK+ +RFR P  + +FI  +++  + +   + S 
Sbjct: 300 IPPSSFPVVLLFLEMPPHEVDVNVHPAKTEVRFRQPAFVHDFIRDTVRTTLMQARPAASF 359

Query: 335 -----SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST----------- 378
                        SS   D +P    P           + F Q +   +           
Sbjct: 360 ASALNGAPYNDAHSSLLIDVSPLPGAPSDPVFDPRRAPEGFPQSDHDPSHEDSAPFFLAP 419

Query: 379 -----------------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                                   +   + +      +  +E              QI  
Sbjct: 420 IPVPESPGRLDFSAAATLAVGYEQEAAHAPEQVDYGKDRVIENPSLYSLSTLKPLGQIRD 479

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           ++I++   +GL IVDQH AHER++FEK+ ++ N+ +I  Q LL P +IDL+  +      
Sbjct: 480 SFILAVNDEGLWIVDQHVAHERILFEKILRERNTEQIQRQRLLMPLLIDLMPDQMVAFAR 539

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E+L R G +AE FGP  +A++  P  L  + + Q++ D++        T     R   
Sbjct: 540 IAEELERQGFEAEPFGPRTLAVKSAPVGLEGRELEQMIEDLLSVEDRIGQTENADTRARR 599

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I A+MAC+ +++    ++  +++ LL E+ K    + C HGRP  ++    +IEK F R
Sbjct: 600 IAASMACHAAVKINMPLERSKIDWLLAELGKTEYPTSCPHGRPIALRYSHKEIEKAFQR 658


>gi|289424087|ref|ZP_06425873.1| DNA mismatch repair protein MutL [Peptostreptococcus anaerobius
           653-L]
 gi|289155512|gb|EFD04191.1| DNA mismatch repair protein MutL [Peptostreptococcus anaerobius
           653-L]
          Length = 627

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 192/629 (30%), Positives = 309/629 (49%), Gaps = 42/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +  IN+IAAGE++ERPS  IKEL+ENS+DA SS +   I  GGK   +I DNG 
Sbjct: 3   KINILDDSTINKIAAGEVVERPSSIIKELVENSIDAGSSYISIEIENGGKDLIRIVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI+  +D S++ + GFRGEAL SI AVS L ++++  +   G 
Sbjct: 63  GIDKDDVNKAFLRHATSKINTVEDLSSLESLGFRGEALASISAVSKLEMLTKTEEALIGL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G KI      + N GT + VRDLFF  PAR  FLKS Q E   ITD++ ++AI  
Sbjct: 123 RIVLDGGKIREKEATSANRGTQISVRDLFFNTPARRKFLKSNQAEAQAITDIVNKIAIGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +   +       Y+      +G+    I  + G D   N +E++ +S   ++ GY G 
Sbjct: 183 PSIKIKYINNSKTIYETL---GDGSIINAIRMIYGRDISENLIEIDYRSKYFSISGYLGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               RGN N  +++INGR ++   I   I  AY   IP+ +YP+  + + +DP +VDVN+
Sbjct: 240 NNIYRGNRNHQHLYINGRYIKSPNISKKINDAYKAIIPINKYPIYFVNISVDPAKVDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  ++F     I N +   ++  + K  +      + +    +++++    +   Y+
Sbjct: 300 HPSKLEVKFDQEEEILNELSDFVRGILLKSSLVGRYKDNSRGKDLYNKNSFAGFNSFSYS 359

Query: 360 T--------------------SLTNTQEKLFLQENRLST------------NDLLPSDDP 387
                                S  NT E   +Q + + T             D    D  
Sbjct: 360 PKEVENNLTSTAIREDVSNSCSNQNTNESPRVQADMIQTPIRLSDINNGGIQDKKEVDSK 419

Query: 388 TYSEDNDPVEESE--ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
              + +  +EES      +        I   YII    D ++++DQHAAHER+ FE    
Sbjct: 420 MEYQQSSFIEESPDRNPDFIGLKFIGIIFDTYIIFSKNDDMIMLDQHAAHERIRFEMYMS 479

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
            + +  I+ Q L+ P I+DL   +   + ++ +     G   E FG  +I+IR +P    
Sbjct: 480 KYKANDISVQMLIDPIIMDLDANDMDTVRKNIDVFSSFGFLVEEFGHRSISIRGLPNTFG 539

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           +    + + ++ID +        + D   + +A +AC  +I+   K+   E   L+ ++E
Sbjct: 540 EPESKRFIYELIDGL---GKIDNIYDTKYDEIAEIACKSAIKGNDKISIEEAKHLIGQLE 596

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +  N   C HGRPT +K+   +IEKLF R
Sbjct: 597 ECSNPYTCPHGRPTMVKMTRYEIEKLFKR 625


>gi|315646576|ref|ZP_07899694.1| DNA mismatch repair protein MutL [Paenibacillus vortex V453]
 gi|315278219|gb|EFU41539.1| DNA mismatch repair protein MutL [Paenibacillus vortex V453]
          Length = 660

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 173/659 (26%), Positives = 292/659 (44%), Gaps = 71/659 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E I NQIAAGE++ERP+  +KEL+EN++DA S++++  +  GG    ++TDNG G
Sbjct: 4   IRILDEHIANQIAAGEVVERPASVVKELVENAIDAGSTKIDVTVEEGGLDSIRVTDNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+   A  RH TSKI++  D   I + GFRGEALPSI AVS + L++   Q+  G +
Sbjct: 64  IDPEDCETAFYRHATSKITEGRDLFQITSLGFRGEALPSIAAVSKVRLVTSNVQDGRGRK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  +      A   GT   V++LFF  PARL ++K+ Q E   I+D + R+A++ P
Sbjct: 124 IEIEGGHLRVNEETAAPRGTDFLVKELFFNTPARLKYMKTIQTELGHISDYMYRLALSRP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT     +    +     NG+  + I+ + G       +    ++ + TL GY   P
Sbjct: 184 DIAFTLRHNGN---SLLQTLGNGDALQVIAAIYGTQSAKAMLAFEAENMDYTLSGYISRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + R N N   + INGR V++  ++  I   Y   +P+ R+P+VV+ L + P  +DVNVH
Sbjct: 241 DYTRANRNGMSLIINGRYVRNYGLMQAILRGYHTLLPINRFPLVVIQLTMHPSLIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---------------------------------N 327
           P+K  +RF     +  F+ + I+K +                                  
Sbjct: 301 PSKLEVRFSKEQELFAFVEEEIRKVLQQEILIPRPAKQAIGKSEHAFIQEQLHFPNAQGR 360

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE-------------- 373
              + +          S  Q +   T  P + ++    ++ L  +               
Sbjct: 361 DASVRSREDGEAPAARSGDQSDQGMTSFPPHGSAWPEKRDHLQPESGIKRSYGDGSGGTP 420

Query: 374 -----NRLSTNDLLPSDDPTYSEDNDPVEE-------------SEATHYQLGIACAQIHQ 415
                   +      S+    ++ N  +                E   +       Q H 
Sbjct: 421 ATASMRETAAASSYRSEYRYENKGNAHIPSVTKEWLQAASGPAPEIPPFPELTLIGQHHG 480

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y+I+Q   GL ++DQHAAHER+ +E   + F      SQ LL P  ++    E   + +
Sbjct: 481 TYLIAQNDSGLYLIDQHAAHERINYEYYYEQFGKPADASQELLLPITLEFTPSESEKVKQ 540

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
                 ++G+  E FG     +R  P    K +   ++ ++ + ++        + R  +
Sbjct: 541 RLHWFEKVGVYMEFFGGQTFLVRSHPFWFPKGDEKAIIEEMAEWVLSERNIDVAKLRETS 600

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   +C  SI++ +K+   E   L++ +        C HGRP  +     D+EK+F R
Sbjct: 601 SI-MCSCKASIKANQKLTEQEAMTLIQRLGDCRQPYTCPHGRPIVVSFSAYDLEKMFKR 658


>gi|225174621|ref|ZP_03728619.1| DNA mismatch repair protein MutL [Dethiobacter alkaliphilus AHT 1]
 gi|225169748|gb|EEG78544.1| DNA mismatch repair protein MutL [Dethiobacter alkaliphilus AHT 1]
          Length = 605

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 186/611 (30%), Positives = 310/611 (50%), Gaps = 27/611 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   N+IAAGE++ERP+  IKEL+EN+LDA ++R++  IAGGG    ++ DNG 
Sbjct: 3   RILLLDEVTANKIAAGEVVERPAAVIKELVENALDAGATRIDISIAGGGLESMRVADNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E++P+A+QRH TSKI  ++D + + + GFRGEALPSI AVS   L+SR  ++  G 
Sbjct: 63  GMAAEDVPLALQRHATSKIQCAEDLTRVTSMGFRGEALPSIAAVSRFRLVSRRAEDMAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G K   V       GT V V DLFF  PARL F KS+  ET  ITD ++R+A+A+
Sbjct: 123 EIEVEGGKTLQVTETGCPVGTEVRVEDLFFNTPARLKFTKSQGAETARITDTVQRLALAW 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF+ +              NG   +   QV+G   +   + L+ +   + L G+   
Sbjct: 183 PNVSFSLTVNGK---NTLVTPGNGQLADAAGQVLGRQNMRQMIPLDWQGELLALHGFLAK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N N  + F+N R ++   +   ++TAY   +P  R+P  ++ +E+D  +VDVNV
Sbjct: 240 PALSRANRNLQFFFVNKRPIRSPLLSDALQTAYQTLLPRNRFPAAIVFVEMDTSEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---------------TSSVLSKKMISS 344
           HPAK  +RF     I   ++   + A+ +  +                 ++    + I  
Sbjct: 300 HPAKREVRFSRERDIYRQLLAGAKAALRQASLIGEMGTPHTAALRETAAATGFYDQAIDF 359

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             Q   P+ ++P  +      + +    E + +     P+   T  E  + V E+   ++
Sbjct: 360 DRQKKLPQDNVPLESPFAGKREAEAVPAEIKETNETAEPAAAETNREATEDVRET-THNF 418

Query: 405 QLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                  Q    YI++Q+  G L +VDQHAAHER+++++++++ +   +  Q ++     
Sbjct: 419 PRLRPIGQYRDTYILAQSQTGELYVVDQHAAHERVLYDQLKRELSDGTLPVQDVIPQ-TF 477

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +L     A +++       LG++ E FG N   +R IP           L +I++   D+
Sbjct: 478 ELDPLTAAALLKSLNIFAELGLRFETFGNNIFILRSIPMFFRHCLNQDDLTEILNSAADA 537

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             T+      E  L  M+C G++++ + +   EM+ LL  + +      C HGRPT + L
Sbjct: 538 DNTH----LFEKTLQMMSCKGAVKANQSLDPKEMSALLNNLAETSQPHTCPHGRPTVLVL 593

Query: 584 KLSDIEKLFGR 594
               + + F R
Sbjct: 594 TEQAVARNFRR 604


>gi|237733850|ref|ZP_04564331.1| DNA mismatch repair protein mutL [Mollicutes bacterium D7]
 gi|229383188|gb|EEO33279.1| DNA mismatch repair protein mutL [Coprobacillus sp. D7]
          Length = 610

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 173/612 (28%), Positives = 300/612 (49%), Gaps = 25/612 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR+L + + N+IAAGE+IERP+  +KEL+ENS+DA S++++ +I  GG +  QI DNG 
Sbjct: 3   KIRQLDDVLANKIAAGEVIERPANVVKELVENSIDANSTKIDVIIEEGGLNLIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +   RH TSKI D  D   I T GFRGEA+PSI ++S+  L  +     TG 
Sbjct: 63  GMVKEDALLCFSRHATSKIKDDQDLFCIQTLGFRGEAIPSIASISNFEL--KTSTGGTGT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +           GT ++V  LF  +PARL ++KS   E   I   + R+++++
Sbjct: 121 TVTYEYGRFVECNESDSKKGTNIKVEKLFQNVPARLKYIKSTNAEFANIQTYLERLSLSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F         YK N    NGN  E IS + G +     + ++ + +E  + GY   
Sbjct: 181 PHIAFMLVHNGRTIYKTN---GNGNLLEVISNIYGLNVAKAMIPVDFEDDEFHVTGYVSK 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              NR + N     +N R V++K  + +I  AY   +   RYP+ ++ +EIDP  VDVNV
Sbjct: 238 IDVNRASKNHMVTMVNSRVVKNKVSVDSINNAYRRYLADKRYPIAIVNIEIDPYLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HP+K  +RF   + +R  I Q +  A+ K  ++  +    K   +      P        
Sbjct: 298 HPSKLEVRFSKESQLRELIYQGVSDALAKVNLTYDATAEYKKTKAPLNLEQPSLDLTYES 357

Query: 353 -----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EAT 402
                   P++        +++  ++        +  +   Y   +  + E+     E  
Sbjct: 358 VPIKTIEQPRFEADFPQNDQEVVFKDASFDDFTFVKEETSEYIIPDQQIIETKVEPREKL 417

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
             +      Q+H  YII +   G+ IVDQHA  ER+ +E   + + +  ++ + LL P  
Sbjct: 418 MKKKLFVKGQVHGTYIICEDETGMYIVDQHAGQERINYEYFLEKYQNLDLSMRDLLVPIT 477

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++    E  +I E  + L ++GI  E FG +   I+++P  +   +    + D++ ++++
Sbjct: 478 LEYPLSEFLIIEERKDLLTKVGINLEVFGNSGYVIKQLPLWMQNIDEQVFIEDMMTQLLN 537

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            +    ++   ++ +AT++C  S+++   + +  M  ++  + +  N   C HGRPT I 
Sbjct: 538 DNKIDVIK-LQDHAIATLSCKASLKANTHLSTEGMQNIIDNLMRCDNPYVCPHGRPTIIY 596

Query: 583 LKLSDIEKLFGR 594
               +IEKLF R
Sbjct: 597 YSTYEIEKLFKR 608


>gi|195978975|ref|YP_002124219.1| DNA mismatch repair protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|238689788|sp|B4U0J7|MUTL_STREM RecName: Full=DNA mismatch repair protein mutL
 gi|195975680|gb|ACG63206.1| DNA mismatch repair protein MutL [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 660

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 176/648 (27%), Positives = 311/648 (47%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L E + NQIAAGE+IERP+  +KEL+EN++DA+SS++   I   G    QITDNG 
Sbjct: 3   TIIELPEVLANQIAAGEVIERPASVVKELVENAIDAKSSQITVEIEESGLKMMQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S LT+ +   +   G+
Sbjct: 63  GMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKLTIKTATAEAEHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +  SG KI  +  V+   GT ++V +LF+  PARL ++KS Q E   + DV+ R+++A+
Sbjct: 123 ILVASGGKIEQLEAVSTPVGTKIKVENLFYNTPARLKYMKSLQAELAHVVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT  +      ++   S  G+  + ++ + G +     ++++    +  + G+  +
Sbjct: 183 PEIAFTLISDGK---QLTQTSGTGDLRQALAGIYGLNTAKKMIDISSADLDFEVGGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  IR      +   I  +I +++ ++ +   ++ +    S+       +T LP   
Sbjct: 300 HPTKQEIRISKERELMALISTAISESLREQDLIPDALENLARSSTRSFSKPEQTSLPLQP 359

Query: 360 TSL--TNTQEKLFLQENRLSTNDLL----------------------------------- 382
           + L     +   F +E  +S +                                      
Sbjct: 360 SQLYYDPQKNDFFTKETVVSEDSPQGFNHEVLIDSDVKQVDNLQVAKTESEAAAPSVKYA 419

Query: 383 ----------------PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                             +    S+  D +E  E + +       Q+H  Y+ +Q  DGL
Sbjct: 420 SRPDPMLSDGEHPGLDVHNKQKLSQMLDRLENEEQSVFPELDYFGQMHGTYLFAQGRDGL 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 480 FIIDQHAAQERVKYEYYRDKIGEVDNSLQQLLVPYLFEFSGSDFINLQEKMSLLNEVGIY 539

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G +   +RE P  + +  I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 540 LEPYGNHTFILREHPIWMKEAEIESGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKRSI 598

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +      +LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 599 KANHSLDDYSARQLLLQLAQCKNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|224370233|ref|YP_002604397.1| MutL [Desulfobacterium autotrophicum HRM2]
 gi|223692950|gb|ACN16233.1| MutL [Desulfobacterium autotrophicum HRM2]
          Length = 638

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 185/636 (29%), Positives = 312/636 (49%), Gaps = 47/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + N+IAAGE++ERP   +KEL+EN+LD+ ++R+   I  GG+   +I+DNG G
Sbjct: 4   IRILPDILTNKIAAGEVVERPVSVVKELVENALDSGATRIVAEIERGGRDLIRISDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ +   +A++R+ TSKI   +D   I TFGFRGEALPS+ AVS  TL +R  + + G +
Sbjct: 64  MSPDNALLAIERYATSKIFTDEDLFAIKTFGFRGEALPSMAAVSKFTLTTREQEGHAGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I  V+      GT+VEV  L++  PAR  FLK    E   I DV   MA+  P
Sbjct: 124 IRIHGGRIMDVQETGAPAGTMVEVAQLYYNTPARRKFLKGVNTEMGHIADVFSGMALGNP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F           +   S +     R  +V G   + N   +   ++EI + G+   P
Sbjct: 184 GVGFRLIHNNRP---VKAFSASATMETRAGEVFGPATLENLKRVELVADEIAITGFLSDP 240

Query: 241 T---FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               F R  A    +F+N R V D+ +++ I   Y   +  GRYP+ ++ + + P +VDV
Sbjct: 241 VDPLFTRSTARNLRLFVNNRLVNDRGLVAAIFQGYRGRLMKGRYPLGLIFVTLPPDRVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN---------------------------KKG 330
           NVHP+K  +RF +   I + ++Q++++A +                           + G
Sbjct: 301 NVHPSKLEVRFCDQRRIFSLVVQAVREAFSGSYKGTAPAASQVKEPTETNRIDRSLFQWG 360

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN---------RLSTNDL 381
                  S   +    +    +  LP+  +S      +     N          L   D 
Sbjct: 361 TPAKDSSSPSALEIEPEPLFSEPTLPEPPSSKPPVSGRPLPDSNVPDSTVSDLSLHEPDH 420

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIAC-AQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             ++   + E    + E +    +       Q+   YI+ +    +V+VDQHAAHER+++
Sbjct: 421 FLAESDVWFEPVPVLPEKQRQQGKSDPIIVGQVFGTYIVVEDNGEMVVVDQHAAHERIVY 480

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           EK+++  ++ +  SQ+L+ PE ++L   E  L+     DL  +G++ E FG  A  ++ I
Sbjct: 481 EKLKKRSDNHRPPSQSLVVPETLELTYREADLLESILPDLAAIGMEIEPFGGTAFIVKSI 540

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQD--RIENILATMACYGSIRSGRKMQSIEMN 558
           PAI+  +++  L+ DI+  +++S      +    ++  +  MAC+ +IR+   +   EM 
Sbjct: 541 PAIIEHRDVRPLVLDIVANLVESGGDAGGETGQWLDECIILMACHTAIRANNPLNHREMK 600

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL  ++   N   C HGRP  I+  +  +E++F R
Sbjct: 601 DLLLALDDCENPDHCPHGRPIRIRWDIHALERMFKR 636


>gi|118340526|gb|ABK80576.1| putative mutL [uncultured marine Nitrospinaceae bacterium]
          Length = 643

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 182/595 (30%), Positives = 304/595 (51%), Gaps = 5/595 (0%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS+ + NQIAAGE++ERP+  +KEL+ENS+DA ++ +   I GGGK   +I DNG 
Sbjct: 51  QIRVLSDDLANQIAAGEVVERPASVVKELVENSIDAGANLIRLDIEGGGKKKIRIMDNGM 110

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  EE  +A  RH TSKIS  +D  NI + GFRGEALPSI +V+ +   S   ++  G 
Sbjct: 111 GMAPEECLLAFSRHATSKISQFEDLDNIQSLGFRGEALPSIASVAKVRCTSARSESEGGK 170

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G ++   + VA   GT +EV  LF+  PAR  FLK +  E + IT V+ + A+A 
Sbjct: 171 LIVVEGGELVEQKDVACTRGTTLEVAQLFYVTPARSKFLKGDSTEFSHITQVVTQQALAN 230

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F  +                    R++++ G D   + +E+  +S +  + G+   
Sbjct: 231 PHIQFHLTHNGREVINTL---PTDQLHYRVAELFGRDLAKSLLEVEAQSGDYQISGFVSS 287

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P + R + N  Y F+NGR V+DK IL   +  Y+  +P G++P + L L +DP+ +DVNV
Sbjct: 288 PVYTRSSRNAQYCFVNGRFVRDKVILHATQQGYSHLLPKGQHPAMFLYLTMDPKLLDVNV 347

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K+ +RF     +  F+   ++ A+ K      +    +      + +       +  
Sbjct: 348 HPSKAEVRFAFQQDVHQFVAHGVRAALEKNQQVNLTTARDETDIPLQEPSYSTRSSYQPP 407

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              +    +  L ++  +            +  +          Y       Q+ +++II
Sbjct: 408 QWTSPPPVQGDLSQSLRTMLSPDAESTQQITCFDKAPTPVSNLIYSEFEPLGQLDRSFII 467

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            Q   G+++VDQH AHER+++E+ R    + K+  Q LL P  I+L   E  ++  H   
Sbjct: 468 MQGKQGVLVVDQHVAHERILYERFRAFAKNRKVEVQKLLFPLPIELSPEETEVLTPHLTR 527

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG++ E FG N   +R +PAIL   +  +LLR++I+ +   +    L ++ E++L  
Sbjct: 528 LLDLGLELELFGKNEFLLRSVPAILKNGDHEKLLREMIESLPKDAHGDVLNEKYEDVLIM 587

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M+C  +I+    +   ++ +L+ ++E+      C HGRP  +   + DI K F R
Sbjct: 588 MSCRNAIKVNHTLNFDQIKKLISDLEQTSMPYTCPHGRPISLLFYMDDILKKFLR 642


>gi|229829058|ref|ZP_04455127.1| hypothetical protein GCWU000342_01143 [Shuttleworthia satelles DSM
           14600]
 gi|229792221|gb|EEP28335.1| hypothetical protein GCWU000342_01143 [Shuttleworthia satelles DSM
           14600]
          Length = 654

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 181/650 (27%), Positives = 299/650 (46%), Gaps = 62/650 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS++ I++I+AGE+IERP+  +KEL EN++DA ++ +   I  GG  + ++TDNG G
Sbjct: 6   IALLSQETIDKISAGEVIERPASVVKELTENAIDAGATAISVEIKEGGIDYIRVTDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+I +A   H TSKI   +D   IH  GFRGEAL SI AVS + L+S+  ++ TG++
Sbjct: 66  IPREQISLAFLPHSTSKIRSSEDLLAIHLLGFRGEALSSIAAVSRVELISKTSESLTGSR 125

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G K  S+  +    GT   VR LFF  PAR  FL++   E N I+D++ R+A+++P
Sbjct: 126 YVIEGAKEISLTEIGAPDGTTFIVRQLFFNTPARRKFLRTAATEGNYISDIMERLALSHP 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF F +    +      +  G+  + I Q+ G     + + +  +    TL+G+ G P
Sbjct: 186 GISFRFISNGKQKM---ATAGKGSLKDAIYQIYGRSVAMDLLPVRCERETYTLEGFIGKP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  RGN +    FINGR V+ + +   +   Y   +   +YP  VL L      VDVNVH
Sbjct: 243 SLTRGNRSFENFFINGRYVRSQLLSKALEEGYKGYMMQHQYPFCVLELTFPDGSVDVNVH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RF +   +   +  ++ + +  +   ++  +  +  +     +A       +  
Sbjct: 303 PTKMEVRFDDADEVYAGLASAVSQRLLMREDISNIPIQSQKPARTPAPSAKAAGAEPFER 362

Query: 361 SL--------------TNTQEKLFLQENRLS-------------TNDLLPSDDPTYSEDN 393
           S                +  EK + +    S              +D+   DD T +  +
Sbjct: 363 SRLEEIRRQIMDDIKNDSPYEKQYDRPISASHTDDASRKDKGIHEDDVSCKDDGTSTGLS 422

Query: 394 DPV-----EESEATHYQLGIA------------------------CAQIHQNYIISQTTD 424
           D       EE       L                             Q+   Y I Q  D
Sbjct: 423 DQKKRKLREEPSGREMNLSERAKKGFGDYTQPKFFSQEARESFTIVGQVFGTYWIIQYAD 482

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            + I+DQHAAHE++++E+        ++TSQ L  P I+ L   E        +  +R+G
Sbjct: 483 KMYIIDQHAAHEKVLYERTMAQLKDKEMTSQLLSPPIIVSLSPLEQEAYDRCSDAFYRIG 542

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
            + E FG    AI+  P  L + +   L  D+I +  D     + +  +E + A+M+C  
Sbjct: 543 FRLEPFGGKEYAIKGGPGNLFQIDARTLFLDMIAQACDFKANASSELVMEKV-ASMSCKA 601

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++   K+   E+  L+ E+    N   C HGRPT I     D+++ F R
Sbjct: 602 AVKGNSKLSLAEIKELIAELLTLENPYHCPHGRPTIISFSHYDLDRKFKR 651


>gi|296111737|ref|YP_003622119.1| DNA mismatch repair protein [Leuconostoc kimchii IMSNU 11154]
 gi|295833269|gb|ADG41150.1| DNA mismatch repair protein [Leuconostoc kimchii IMSNU 11154]
          Length = 659

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 181/645 (28%), Positives = 311/645 (48%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+EN++D+ ++++E V+   G++  ++ DNG 
Sbjct: 3   KIHELSNLLANQIAAGEVIERPASVVKELVENAIDSGATQIEVVVEDAGEALIRVVDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A  RH TSKI D  D  NI + GFRGEALPSI A++ +TL +       G 
Sbjct: 63  GIDPEDVPLAFTRHATSKIVDRHDLFNIMSLGFRGEALPSIAAIADVTLNTTTHDAPEGL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G K  S  P     GT+V VRDLF+  PARL +LK  Q E + I D++ R+A++Y
Sbjct: 123 MYHIKGGKQVSATPANGRFGTVVSVRDLFYNTPARLKYLKRPQTELSKIADIMNRLALSY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++FT +        +   + NGN  + I+ + G +     + +  + ++  + GY  +
Sbjct: 183 TNIAFTITADGR---VLLKTTGNGNQQQVIAAIYGRESAQKMLSIAGEDDDFNITGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG+     + +NGR +++  + + +   Y   + +GR+P+ V+ +  DP  +DVNV
Sbjct: 240 PELTRGSREYLTILVNGRFIKNFTVSNAVIHGYGSKLMVGRFPMGVVNINTDPLLIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP KS IR    T +   I+++IQ+ + ++ +   +  +        Q   P    P   
Sbjct: 300 HPQKSEIRLSKETELSALIVKTIQERLAEENLIPDAYENLYGKKQVSQTTRPTQTAPWVQ 359

Query: 360 TSLT------------------------------NTQEKLFLQ----------------- 372
            +++                              NT +  F +                 
Sbjct: 360 KNVSEVGQARPNVTTNTGSDIAGISITKRTQLSQNTVQDFFNKYTNEATLPVFNDLEQDM 419

Query: 373 ---ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                 ++T      DD    ++   V   + + +       Q+H  ++ +Q+ D L ++
Sbjct: 420 AQVTEPVTTYQSSVYDDVVAQQETLDVIPDKPSGFPELSYIGQMHGTFLFAQSADSLFLI 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAA ER+ +E  RQ         Q LL P  I+    +   I +H+++L  +G+   +
Sbjct: 480 DQHAAQERINYEYYRQKIGEVSADKQRLLVPITINYTASDMLKIADHEQELVDVGLAVTQ 539

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FGP  + IRE P         + +R++ID I+    + T+    E     M+C  +I++ 
Sbjct: 540 FGPTTVIIREHPTWFETGQEEETIREMIDWILRDG-SLTVAKFRERAAIMMSCKRAIKAN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   +   LL+ +    N   C HGRP   +L L+++EK+F R
Sbjct: 599 MHLSDSQAKALLQSLSLAKNPYNCPHGRPVLTQLTLTEMEKMFKR 643


>gi|302023154|ref|ZP_07248365.1| DNA mismatch repair protein [Streptococcus suis 05HAS68]
          Length = 645

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 177/632 (28%), Positives = 304/632 (48%), Gaps = 44/632 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++E  +   G    QITDNG G
Sbjct: 4   IIELPEILANQIAAGEVIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VSH+ + +    +  G  
Sbjct: 64  IAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  I    PV+   GT + V DLF+  PARL +++S+Q E + I DV+ R+++A+P
Sbjct: 124 LEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKYVRSQQAELSHIVDVVNRLSLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G   + IS + G       VE+  +  +  + GY  +P
Sbjct: 184 EMAFALVNEGR---ELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ +EIDP   DVNVH
Sbjct: 241 ELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   I ++I +A+ ++ +   ++ +    S+  +  A +  LP    
Sbjct: 301 PTKQEVRISKEKELMTLIREAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREP 360

Query: 361 -----------------------------------SLTNTQEKLFLQENRLSTNDLLPSD 385
                                                 N    +   E +   ++     
Sbjct: 361 KIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPAENKPTSVQFAERQSVESEDQEHP 420

Query: 386 DPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           + +  E     D ++    + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E 
Sbjct: 421 NLSAKELAKLADKLDREATSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYEY 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+       ++Q LL P I +  + +   ++   + L ++G+  E +G N   +RE P 
Sbjct: 481 YREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPI 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       LLR
Sbjct: 541 WMKEEAIESGIYEMCDMLLLTDQV-SIKQYRAELAIMMSCKRSIKANHALDDYSARDLLR 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRR 631


>gi|331269501|ref|YP_004395993.1| DNA mismatch repair protein hexb [Clostridium botulinum BKT015925]
 gi|329126051|gb|AEB75996.1| DNA mismatch repair protein hexb [Clostridium botulinum BKT015925]
          Length = 643

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 199/643 (30%), Positives = 331/643 (51%), Gaps = 54/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LSE+  N+IAAGE++ERP+  +KEL+ENS+DA S  +   I   GK   +ITD+G 
Sbjct: 3   RINLLSEETSNKIAAGEVVERPASVVKELVENSIDASSQNITIEIKESGKEEIKITDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKIS  +D  +I+TFGFRGEALPSI AVS++ L +R   ++ G 
Sbjct: 63  GIHPEDVEKAFMPHGTSKISLIEDLYSINTFGFRGEALPSIAAVSNVLLKTRTKDSDFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++++SG K++ V+    N GT++EV+DLFF +PAR  FLKS++ E+ LI+++I R+A+A 
Sbjct: 123 ELSMSGGKVNYVKDTGCNIGTVIEVKDLFFNVPAREKFLKSDKRESGLISNIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +SF +               + +  + I  + G++   N +   + S+ +++ GY G 
Sbjct: 183 HNISFKYYNNDKRSLITFA---SEDAKDTIRAIYGKNIYENIISFEKYSDIVSVYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R ++   I + +  A+     + ++P  VL L+I P  +DVNV
Sbjct: 240 SKISRGSRNNQSIFVNKRYIKSGIITAAVENAFKSFSTVNKFPFFVLFLDIYPEFLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP-------- 351
           HP KS ++F++  II   +  ++  A++     + S+  ++  S       P        
Sbjct: 300 HPTKSEVKFQDERIIYKVVFDAVHSALSDSVRKSFSIEFQEEDSEPTPVQIPIDLKDKEI 359

Query: 352 KTHLPKYATSLTN----------------------------------TQEKLFLQENR-- 375
           K+ +     SL N                                   +E  FL+EN   
Sbjct: 360 KSVINDLERSLNNLNDTKLNNDCNNINNQLINKDTFTNINEKEYNKYDKEDTFLKENTNI 419

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATH----YQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                     +   + +N+  E+SE       +       Q ++ YI++QT D   ++DQ
Sbjct: 420 SKYTTYKIDTNCKTTNNNESKEQSETLEQIAKFPKLNVIGQFNKTYILAQTLDVFYMIDQ 479

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAAHE+++FEK R    +  + SQ LLTP +I++   + A   ++       G   E FG
Sbjct: 480 HAAHEKILFEKFRNQIKNRDVISQILLTPVVIEMSAEDFAYYSDNKNIFEESGFSVELFG 539

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
            N I+IRE P +L K +      +I+D+I +      +++   N++A++AC  +I++   
Sbjct: 540 DNTISIREAPMLLGKVSTKDFFLEILDDIKNMGNG-NIEEVKHNMIASLACKAAIKANHS 598

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   EM+ L+ E+        C HGRPT IK  L +IEK F R
Sbjct: 599 LSYEEMSSLVEELRYIEEPFNCPHGRPTIIKSSLKEIEKKFKR 641


>gi|304385249|ref|ZP_07367594.1| DNA mismatch repair protein MutL [Pediococcus acidilactici DSM
           20284]
 gi|304328456|gb|EFL95677.1| DNA mismatch repair protein MutL [Pediococcus acidilactici DSM
           20284]
          Length = 640

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 179/629 (28%), Positives = 303/629 (48%), Gaps = 41/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS+ + +QIAAGE++ERP+  +KEL+EN++DA SSR++ ++A  G    ++ DNG 
Sbjct: 3   KIQELSDILADQIAAGEVVERPASVVKELVENAIDAGSSRIDILLAESGLKMIRVIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++  A +RH TSKI+   D   + T GFRGEALPSI +++ + + S   +   G 
Sbjct: 63  GIEGSQVETAFKRHATSKITSRADLFRVGTLGFRGEALPSIASIADVKMTSSTAEGP-GQ 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G ++   R      GT + V DLFF  PARL +LKS   E + ITD+I R+A++Y
Sbjct: 122 FVHYRGGELIEHREAQSRQGTDITVSDLFFNTPARLKYLKSLATELSKITDIINRIALSY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F+    +    ++   S  GN  + ++ + G       ++++ +S +  + GY  +
Sbjct: 182 PEIAFSLQNDER---QLMRTSGQGNVQQVLANIYGTHNAQKMLDIHGESVDFRIDGYVSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R N +   + +NGR +++  I   I   Y   + +GRYPV V+ ++ DP  VDVNV
Sbjct: 239 PEFTRANRSYITILVNGRYIKNFHISKAIIEGYGSKLMVGRYPVAVINIQTDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV----------------------- 336
           HP+K  +R      +   I ++I   +  + +   +V                       
Sbjct: 299 HPSKLEVRISEENTLTELISKTIFDRLADQNLIPDAVDNLKKKRISKPAGEQLDLTETVL 358

Query: 337 -------LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                     +  +    D+A   H    AT       +  LQ +R++      +D  T 
Sbjct: 359 SGSFGKPTPTESAAVEEDDSAAALHPSVAATKPIIISTRQDLQSDRIAEFKEKYADSTTP 418

Query: 390 SEDNDPVEESEAT----HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
              N+  E  E T     +       Q+H  Y+ ++  DGL I+DQHAA ER+ +E  R 
Sbjct: 419 VTKNENTEGEEKTPSTSRFPALTYIGQMHGTYLFAEADDGLYIIDQHAAQERINYEYYRV 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                    Q LL P  +D    +   I E    L   G+  E FG N   +R  P    
Sbjct: 479 QIGQVSDDQQDLLVPIYLDYSTTDTLRIKEKQSVLEACGLYLEEFGRNTFIVRHHPTWFK 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           K      +++++D +++     T+    E     M+C  +I++   +  ++  +LL+++ 
Sbjct: 539 KGQEEDTVKEMVDYVLNDRN-MTVAKFREATAIMMSCKRAIKANHHLDDLQAKQLLKDLA 597

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           K  N   C HGRP  +    +D+EK+F R
Sbjct: 598 KVENPFNCPHGRPVLVHFSTTDMEKMFKR 626


>gi|190570725|ref|YP_001975083.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356997|emb|CAQ54386.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 602

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/611 (37%), Positives = 349/611 (57%), Gaps = 27/611 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG++   +TDNG
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSSEIEIKIESGGRNLITVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  E++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+        
Sbjct: 61  NGIEKEDLELAFMRHATSKLSDGELIEIRHLGFRGEALPSIAAVSRMKLSSKASGAKEAW 120

Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I   G EK+  + P ++  GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SIRYEGGEKVREITPCSLLQGTYIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K   Q++  N    I     ++F +N++E+ E+   I L+G+  
Sbjct: 181 NYSIGFTLTSGNKKLLKYVKQTSLFNRLCEIE----KEFQSNSLEVKEEEEGIKLKGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  NRGN+ Q Y F+NGR ++D  ++  IR AY + IP  RYP  VL LE+   QVDVN
Sbjct: 237 KPNVNRGNSTQIYTFVNGRPMKDNLLVGAIRYAYHDFIPNNRYPFAVLHLEVPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-----SSFHQDNAPKT 353
           VHP KS +RF+N  +I   + + I K ++ +  +    + +++I     S    D+  K 
Sbjct: 297 VHPNKSEVRFQNKRLIYEIVRRGIIKTLSTRFAAGDQGIEEELIFNDSKSQEQIDSQEKK 356

Query: 354 HLPKYATSLTNTQEKLFLQE------NRLSTNDLLPSDDPTYSEDNDPVEESEAT---HY 404
              ++     +  E   ++E       R S  +     +    +    +E  +      +
Sbjct: 357 DQKEFYEKRPSLLENRLMKEFNAPDERRQSLPETFKYGESPPQKGTMVLERKQIDLIADH 416

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A  Q++  YII++    L+IVDQHAAHERLI+E +      T I  Q  L PE ++
Sbjct: 417 PLGYARCQVYNTYIIAEAKGKLIIVDQHAAHERLIYECL------TSIKRQKFLLPETVE 470

Query: 465 L-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +  +    ++  + + L  +G   E    + + ++EIPAIL   N+ +++ +I+D +++ 
Sbjct: 471 IKNQAGMEMVGMYKDRLFEMGFGIEIESEDKVRVKEIPAILGTINVKEMVMNIVDRLMEI 530

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             T  +++++  ILAT+AC+GSIR+GR M+  EMN L+R+ME+ P + QCNHGRPT+I++
Sbjct: 531 GDTLPIEEKVNKILATIACHGSIRAGRAMKLEEMNELMRQMEETPYAGQCNHGRPTYIEM 590

Query: 584 KLSDIEKLFGR 594
           KLSDIEKLF R
Sbjct: 591 KLSDIEKLFER 601


>gi|190571443|ref|YP_001975801.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018841|ref|ZP_03334649.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357715|emb|CAQ55164.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995792|gb|EEB56432.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 609

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/615 (38%), Positives = 356/615 (57%), Gaps = 28/615 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG++   + D+G
Sbjct: 1   MAIVLLDTKTINRIAAGEVIERPASVVKELVENAIDARSSEIEIKIESGGRNLITVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  +++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+  + +   
Sbjct: 61  SGVKKDDLELAFMRHATSKLSDSELIEIKHLGFRGEALPSIAAVSRIKLSSKASKADQAW 120

Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I   G EKI  + P  ++ GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SIRYEGGEKIGELVPYPLSIGTYIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT  +      K+   +   +   R+ +V  E+F  N+++++E+ + I L GY  
Sbjct: 181 NYGIEFTLISDNK---KLLKYAKQNSLFSRLCEV-EEEFHENSLQISEEEDGIRLTGYIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NR N+ Q Y F+NGR ++D  ++  IR AY + IP  RYP   L LEI   QVDVN
Sbjct: 237 KPTVNRSNSTQIYTFVNGRPIKDNLLIGAIRYAYHDLIPSNRYPFAALHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP-- 356
           VHP KS +RF+N  +I   + + + K ++K+     +VL++   ++ H  + P +     
Sbjct: 297 VHPNKSEVRFQNKRLIYEIVRRGLIKVLSKRIDLAETVLAQNGTTTNHLSSDPFSRSSLK 356

Query: 357 -----KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA---------- 401
                + +    N   + F   N  + +    S    Y+        +E           
Sbjct: 357 NEFYGRRSDPFENQLMRKFTSPNIETKSLSEHSKSFDYTGMQKSPPRAETTILERKQTDL 416

Query: 402 -THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              Y LG A  QI+  YII++  D L+IVDQHAAHERL++E ++     + I  Q LL P
Sbjct: 417 IRDYPLGFAHCQIYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---EKSSIKRQKLLLP 473

Query: 461 EIIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           E++++  +    +I  + + L  +G   E    NAI ++EIPAIL   ++ ++L DI+D 
Sbjct: 474 EMVEIKSQAGMEMIEVYKDKLFEMGFDIEIKSENAIIVKEIPAILGSIDVKKMLIDIVDR 533

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           +I+   T  ++D+I  ILAT+AC+GSIR+GRKM+  EMN LLR++EK P S QCNHGRPT
Sbjct: 534 LIEIEDTLPIEDKINKILATIACHGSIRAGRKMKLEEMNELLRQIEKTPYSGQCNHGRPT 593

Query: 580 FIKLKLSDIEKLFGR 594
           +I++KLSDIEKLF R
Sbjct: 594 YIEMKLSDIEKLFER 608


>gi|319940113|ref|ZP_08014467.1| DNA mismatch repair protein mutL [Streptococcus anginosus 1_2_62CV]
 gi|319810827|gb|EFW07154.1| DNA mismatch repair protein mutL [Streptococcus anginosus 1_2_62CV]
          Length = 648

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 295/636 (46%), Gaps = 47/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERPS  +KELIENS+DA ++++   I   G    Q+ DNG 
Sbjct: 3   KIIELPENLANQIAAGEVIERPSSVVKELIENSIDAGATQIIVEIEEAGLRSIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+ +A++RH TSKI    D   I T GFRGEALPSI +VS LT+ +       G 
Sbjct: 63  GIEHEEVSLALRRHATSKIKKQADLFRIRTLGFRGEALPSIASVSRLTIETATSSGAHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G ++ ++ P +   GT ++V DLFF  PARL ++KS+Q E + I DVI R+++A+
Sbjct: 123 LLIAQGGEVETLEPSSCPRGTKIKVEDLFFNTPARLKYMKSQQAELSHIVDVINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT         +    +  GN  + I+ + G       +E+     +  + GY  +
Sbjct: 183 PEVAFTLVNDGKEMTR---TAGTGNLRQAIAGIYGLTTAKKMIEILASDLDFEVSGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIAVIDIRIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---------------------- 337
           HP K  +R      +   I Q+I  ++ ++ +   ++                       
Sbjct: 300 HPTKQEVRISKERELMVLISQAIAASLKEQDLIPDALENLAKSTINRAIKPEQTSLPLKE 359

Query: 338 ----SKKMISSFHQDNAPKTHLPKYATSLTNTQEKL-------------FLQENRLSTND 380
                 K  + F          P +  S    Q+               F +    S N 
Sbjct: 360 NRLYYDKERNDFFVKPQVSEAQPSFEESARLDQQSADTDELNSKAASVKFAERQSPSYNQ 419

Query: 381 LLPS--DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L     D  +     D +   E + +       Q+H  Y+ +Q   GL I+DQHAA ER+
Sbjct: 420 LDHPELDQASLERALDKLNGEETSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQERV 479

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E  R+       + Q LL P I +    +   + +    L  +G+  E +G N   +R
Sbjct: 480 KYEYYREKIGDVDASQQQLLVPYIFEFPADDMLRLKQRMTLLEEVGVFLEEYGTNQFILR 539

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  L ++ I   + ++ D ++ +    +++     +   M+C  SI++   +      
Sbjct: 540 EHPIWLKEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHSLDDYSAR 598

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            L+ ++ +  N   C HGRP  +    SD+ K+F R
Sbjct: 599 DLIFQLSQCDNPYNCPHGRPVLVNFTKSDMGKMFRR 634


>gi|168186344|ref|ZP_02620979.1| DNA mismatch repair protein hexb [Clostridium botulinum C str.
           Eklund]
 gi|169295821|gb|EDS77954.1| DNA mismatch repair protein hexb [Clostridium botulinum C str.
           Eklund]
          Length = 647

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/647 (30%), Positives = 338/647 (52%), Gaps = 58/647 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  LSE+  N+IAAGE++ERP+  +KEL+ENS+DA +  +   +   GK   +I+D+G 
Sbjct: 3   RVNLLSEETSNKIAAGEVVERPASVVKELVENSIDANAKNITIEVKESGKESIKISDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A   H TSKIS  +D  +I+TFGFRGEALPSI AVS++ L S+   ++ G 
Sbjct: 63  GIHPDDVEKAFMPHGTSKISLIEDLYSINTFGFRGEALPSIAAVSNVLLKSKTMDSDFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +++ISG +I+ ++  A N GT++ V DLFF +PAR  FLKS++ E++LI++++ R+A+A 
Sbjct: 123 ELSISGGRINHIKDTACNVGTVISVEDLFFNVPAREKFLKSDRRESSLISNIVNRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +SF + T           S   +    I  + G++   N +   E S+ +++ GY G 
Sbjct: 183 NNISFKYYTNNKKTLMTYASS---DVKNTIRSIYGKNIYENIISFEEHSDIVSVYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R ++   I + +  A+     + ++P  VL ++I P  +DVNV
Sbjct: 240 SEISRGSRNNQSIFVNKRYIKSGTITAAVENAFKSFSTVNKFPFFVLFVDIYPEFIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-----KKGISTSSVLSKKMIS-SFHQDNAPKT 353
           HP KS ++F++  II   +  ++  A++        I+ +S+   K  +    QD  PK 
Sbjct: 300 HPTKSEVKFQDERIIYKVVFDAVHSALSTSIKDSFNINKNSIFDNKDTNYKLMQDEVPKQ 359

Query: 354 -------------------HLPKYATSLTNTQEKLFLQEN-------------RLSTNDL 381
                               LPK+  +++  + K   +EN              L T ++
Sbjct: 360 EQVEIPIDLQNKRSASIIESLPKFKPNVSYEEPKDSCRENCFKNRDIKFNNTEELETPNI 419

Query: 382 LPSDDPTYSEDNDPVEESEATH--------------YQLGIACAQIHQNYIISQTTDGLV 427
              +  + S  ++ + E   +               +       Q ++ YI+++++D   
Sbjct: 420 NYENFMSASTTDNIICEKPQSKSTKATDTCTALESKFPRLNILGQFNKTYILAESSDTFY 479

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQHAAHE+++FEK +    + ++ SQ LLTP II++   +     E+    H  G   
Sbjct: 480 MIDQHAAHEKILFEKFKNQIENREVVSQILLTPVIIEMNAEDFVYYSENINIFHESGFVT 539

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E FG N I IRE P +L K N      +I+D+I +       + +  N++A++AC  +I+
Sbjct: 540 EIFGDNIINIREAPMLLGKVNTKDFFLEILDDIKNMGNGNIAKVK-HNMIASLACKAAIK 598

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   +   EMN L+ ++        C HGRPT IKL L +IEK F R
Sbjct: 599 ANHTLSYEEMNSLVEDLRYIEEPFNCPHGRPTIIKLTLKEIEKKFKR 645


>gi|171913433|ref|ZP_02928903.1| DNA mismatch repair protein MutL [Verrucomicrobium spinosum DSM
           4136]
          Length = 645

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 195/643 (30%), Positives = 326/643 (50%), Gaps = 53/643 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR LS+ + +Q+AAGE++ERP+  ++EL+ENSLDA +S VE  +  GG +  ++TDNG 
Sbjct: 3   KIRILSDALASQVAAGEVVERPAAVVRELVENSLDAGASHVEVHVQRGGTALIRVTDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  + ++RH TSKI   +D + I TFGFRGEA+PSI +VS   L SR P+  +G 
Sbjct: 63  GMDREDALLCLERHATSKIRTKEDLAAIRTFGFRGEAMPSIASVSRFRLASRQPEALSGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+ SV+     PGT+VE R LFF IPAR  FL+SEQ E + +    R  AIA 
Sbjct: 123 EVEIQGGKMVSVKDYGGAPGTVVEARSLFFNIPARRKFLRSEQTEFSHVEQQFRLHAIAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE-LNEKSNEITLQGYTG 238
             V+FT        + +       +   RI  + G +     +E  +   N +T+ G+  
Sbjct: 183 AHVAFTLVRDGDVLFHLPA---TQDLRHRIEGLSGRETARRLIEVQSFTLNGVTVSGFIS 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  +R N      F+NGR V    +   +R  Y  ++  G++P+  L L + P   D+N
Sbjct: 240 GPGVSRPNRQMQLTFLNGRPVDSATVNFGLREGYHTSLMKGQHPITFLFLTMAPEAFDIN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------------------SS 335
           VHPAK  +RF +   +R  ++Q++ +A+      +                         
Sbjct: 300 VHPAKKEVRFHDGHGVREAVVQAVSRALAGSAEISTGHMPIGAQRAAQPTRQQVLEQMPP 359

Query: 336 VLSKKMISSFHQDNAP----KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
           ++ +    S  +D A         P ++ +     +    +    +T    PSD P +S 
Sbjct: 360 LIPESEQRSLRRDWAELPQRTPSPPGHSPAPAPRTQDFGSRPQPFATTAPAPSDAPVHSS 419

Query: 392 DNDPVEESEATHY--------------------QLGIACAQIHQNYIISQTTDGLVIVDQ 431
             +P E     +                             +H+ Y++ ++++GLV++DQ
Sbjct: 420 STEPAEIPSPEYPASQTPSPAPPPPGAPSEVSADSFRILGVLHKLYVLMESSEGLVLMDQ 479

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAAHER++FE+MR       + SQ LL P  +++   +  ++      LH+LG++AE FG
Sbjct: 480 HAAHERVLFEQMRNAMEQQGVPSQRLLLPLTLEVSPRDFDMMSRSLPTLHKLGVEAEPFG 539

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
            NA  +  +PA +   +   LLRDI++E+  +S+  +     E+++AT  C  ++++   
Sbjct: 540 ANAFKVDAMPAFIRTDDPLALLRDIMEELASASSRTSSLRLGEDMIATTVCRHAVKANDD 599

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++  E+ +LL+++        C HGRPT I++  +++E+ FGR
Sbjct: 600 LREPELRKLLQDLFTCEMPYCCPHGRPTLIQISFAELERKFGR 642


>gi|119356019|ref|YP_910663.1| DNA mismatch repair protein MutL [Chlorobium phaeobacteroides DSM
           266]
 gi|166232082|sp|A1BCW2|MUTL_CHLPD RecName: Full=DNA mismatch repair protein mutL
 gi|119353368|gb|ABL64239.1| DNA mismatch repair protein MutL [Chlorobium phaeobacteroides DSM
           266]
          Length = 624

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 178/626 (28%), Positives = 306/626 (48%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + N+I+AGE+++RP+  IKEL+EN++DA +S++   I   GK   QI DNG 
Sbjct: 3   KIARLPDNVANKISAGEVVQRPASVIKELLENAIDACASKITVTIKDAGKELVQIVDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ ++  ++V+R  TSKIS  +D  ++ + GFRGEALPSI +VS   L ++P     G 
Sbjct: 63  GMSRQDALLSVERFATSKISGVEDLDSLMSLGFRGEALPSIASVSQFELKTKPEGALLGF 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G +      V    GT + VR+LF+ +PAR  FLKS   E   I + ++ +A+AY
Sbjct: 123 RFRCDGGEPVEESEVNAEKGTTITVRNLFYNVPARRKFLKSNATEFRHIFESVKSLALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ +   +     +         +  ER+    GE+F  + + ++E+++ +++ G+ G 
Sbjct: 183 PEIEWKMVSDDEELFHFRTP----DIYERLDAFYGENFSLSLIPVSEENDYLSISGFLGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +      Y+++N R +Q++ +   ++ AY E +   + P  +L L IDP ++DVNV
Sbjct: 239 PGMQKRQKLDQYIYVNRRIIQNRMLSQALQQAYGELLVERQAPFALLFLGIDPSRIDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------------- 340
           HPAK  ++F +   +R      I++ I     S  +   +                    
Sbjct: 299 HPAKLEVKFEDERSVRTMFYPVIKRTIQLHDFSPDAAEKEPCSIKEGTLDCSSRKLGFQD 358

Query: 341 ----------MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
                     + +++ Q     T   + A +    +             DL    D   +
Sbjct: 359 IAEPASTTSTLYANYRQGAFGDTPFERPAYAEKEPRPSSINTGFERFEPDLREGGDLFST 418

Query: 391 EDN--DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                   +++     +      Q+H  YII Q   G++I+DQH AHER+++E+     N
Sbjct: 419 TLQARPYEDDNTPDPGENDPKIWQLHNKYIICQIKTGMMIIDQHVAHERVLYERAVDVMN 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
                SQ LL P+ I+L   E  +  E  +DL+RLG     FG   + I  IP  +    
Sbjct: 479 QNVPNSQQLLFPQKIELRAWEYEVFEEIRDDLYRLGFNLRSFGAKTVMIEGIPQDVRPGT 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              +L+D+I E  ++S+   L+ R EN+  + +C  +I +G+K+   EM  L+  +    
Sbjct: 539 EVTILQDMITEFQENSSKLKLE-RRENLARSYSCRNAIMAGQKLSLEEMRSLIDNLFATR 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
               C HGRP  IKL L  ++++FGR
Sbjct: 598 VPYTCPHGRPVIIKLSLDQLDRMFGR 623


>gi|270290978|ref|ZP_06197201.1| DNA mismatch repair protein mutL [Pediococcus acidilactici 7_4]
 gi|270280374|gb|EFA26209.1| DNA mismatch repair protein mutL [Pediococcus acidilactici 7_4]
          Length = 640

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 178/629 (28%), Positives = 302/629 (48%), Gaps = 41/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS+ + +QIAAGE++ERP+  +KEL+EN++DA SSR++ ++A  G    ++ DNG 
Sbjct: 3   KIQELSDILADQIAAGEVVERPASVVKELVENAIDAGSSRIDILLAESGLKMIRVIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++  A +RH TSKI+   D   + T GFRGEALPSI +++ + + S   +   G 
Sbjct: 63  GIEGSQVETAFKRHATSKITSRADLFRVGTLGFRGEALPSIASIADVKMTSSTAEGP-GQ 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G ++   R      GT + V DLFF  PARL +LKS   E + ITD+I R+A++Y
Sbjct: 122 FVHYRGGELIEHREAQSRQGTDITVSDLFFNTPARLKYLKSLATELSKITDIINRIALSY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F+    +    ++   S  GN  + ++ + G       ++++ +S +  + GY  +
Sbjct: 182 PEIAFSLQNDER---QLMRTSGQGNVQQVLANIYGTHNAQKMLDIHGESVDFRIDGYVSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R N +   + +NGR +++  I   I   Y   + +GRYPV V+ ++ DP  VDVNV
Sbjct: 239 PEFTRANRSYITILVNGRYIKNFHISKAIIEGYGSKLMVGRYPVAVINIQTDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV----------------------- 336
           HP+K  +R      +   I ++I   +  + +   +V                       
Sbjct: 299 HPSKLEVRISEENTLTELISKTIFDRLADQNLIPDAVDNLKKKRISKPAGEQLDLTETVL 358

Query: 337 -------LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                     +  +    D+    H    AT       +  LQ +R++      +D  T 
Sbjct: 359 SGSFGKPTPTESAAVEEDDSTAALHPSVAATKPIIISTRQDLQSDRIAEFKEKYADSTTP 418

Query: 390 SEDNDPVEESEAT----HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
              N+  E  E T     +       Q+H  Y+ ++  DGL I+DQHAA ER+ +E  R 
Sbjct: 419 VTKNENTEGEEKTPSTSRFPALTYIGQMHGTYLFAEADDGLYIIDQHAAQERINYEYYRV 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                    Q LL P  +D    +   I E    L   G+  E FG N   +R  P    
Sbjct: 479 QIGQVSDDQQDLLVPIYLDYSTTDTLRIKEKQSVLEACGLYLEEFGRNTFIVRHHPTWFK 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           K      +++++D +++     T+    E     M+C  +I++   +  ++  +LL+++ 
Sbjct: 539 KGQEEDTVKEMVDYVLNDRN-MTVAKFREATAIMMSCKRAIKANHHLDDLQAKQLLKDLA 597

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           K  N   C HGRP  +    +D+EK+F R
Sbjct: 598 KVENPFNCPHGRPVLVHFSTTDMEKMFKR 626


>gi|167754511|ref|ZP_02426638.1| hypothetical protein CLORAM_00012 [Clostridium ramosum DSM 1402]
 gi|167705343|gb|EDS19922.1| hypothetical protein CLORAM_00012 [Clostridium ramosum DSM 1402]
          Length = 613

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 173/612 (28%), Positives = 300/612 (49%), Gaps = 25/612 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR+L + + N+IAAGE+IERP+  +KEL+ENS+DA S++++ +I  GG +  QI DNG 
Sbjct: 6   KIRQLDDVLANKIAAGEVIERPANVVKELVENSIDANSTKIDVIIEEGGLNLIQIIDNGE 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +   RH TSKI D  D   I T GFRGEA+PSI ++S+  L  +     TG 
Sbjct: 66  GMVKEDALLCFSRHATSKIKDDQDLFCIQTLGFRGEAIPSIASISNFEL--KTSTGGTGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +           GT ++V  LF  +PARL ++KS   E   I   + R+++++
Sbjct: 124 TVTYEYGRFVECNESDSKKGTNIKVEKLFQNVPARLKYIKSTNAEFANIQTYLERLSLSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F         YK N    NGN  E IS + G +     + ++ + +E  + GY   
Sbjct: 184 PHIAFMLVHNGRTIYKTN---GNGNLLEVISNIYGLNVAKAMIPVDFEDDEFHVTGYVSK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              NR + N     +N R V++K  + +I  AY   +   RYP+ ++ +EIDP  VDVNV
Sbjct: 241 IDVNRASKNHMVTMVNSRVVKNKVSVDSINNAYRRYLADKRYPIAIVNIEIDPYLVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HP+K  +RF   + +R  I Q +  A+ K  ++  +    K   +      P        
Sbjct: 301 HPSKLEVRFSKESQLRELIYQGVSDALAKVNLTYDATAEYKKTKAPLNLEQPSLDLTYES 360

Query: 353 -----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EAT 402
                   P++        +++  ++        +  +   Y   +  + E+     E  
Sbjct: 361 VPIKTIEQPRFEADFPQNDQEVVFKDASFDDFTFVKEETSEYIIPDQQIIETKVEPREKL 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
             +      Q+H  YII +   G+ IVDQHA  ER+ +E   + + +  ++ + LL P  
Sbjct: 421 MKKKLFVKGQVHGTYIICEDETGMYIVDQHAGQERINYEYFLEKYQNLDLSMRDLLVPIT 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++    E  +I E  + L ++GI  E FG +   I+++P  +   +    + D++ ++++
Sbjct: 481 LEYPLSEFLIIEERKDLLTKVGINLEVFGNSGYVIKQLPLWMQNIDEQVFIEDMMMQLLN 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            +    ++   ++ +AT++C  S+++   + +  M  ++  + +  N   C HGRPT I 
Sbjct: 541 DNKIDVIK-LQDHAIATLSCKASLKANTHLSTEGMQNIIDNLMRCDNPYVCPHGRPTIIY 599

Query: 583 LKLSDIEKLFGR 594
               +IEKLF R
Sbjct: 600 YSTYEIEKLFKR 611


>gi|296875590|ref|ZP_06899661.1| DNA mismatch repair protein HexB [Streptococcus parasanguinis ATCC
           15912]
 gi|296433387|gb|EFH19163.1| DNA mismatch repair protein HexB [Streptococcus parasanguinis ATCC
           15912]
          Length = 693

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 182/635 (28%), Positives = 308/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++   I   G    +ITDNG 
Sbjct: 49  QIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGASQIVVEIEEAGLKSIRITDNGE 108

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +A++RH TSKI    D   I T GFRGEA+PSI +VS LTL++       G 
Sbjct: 109 GIAHDEVALALRRHATSKIKSQADLFRIRTLGFRGEAMPSIASVSILTLLTAQEGAVHGT 168

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I  V P     GT + V DLFF  PARL +LKS+Q E + I D++ R+++A+
Sbjct: 169 KLVAKGGEIEEVEPATSPVGTKITVEDLFFNTPARLKYLKSQQAELSHIVDILNRLSLAH 228

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         K    +  GN  + I+ V G       V +  +  +  + G+  +
Sbjct: 229 PEIAFTLINDGKEMTK---TAGTGNLRQAIAGVYGLASAKKIVAIENRDLDFEVTGFVSL 285

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +FINGR +++  +   I  +Y   + +GR+P+ ++ ++IDP   DVNV
Sbjct: 286 PELTRANRNYISLFINGRYIKNFLLNRAILDSYGSKLMVGRFPLAIINIQIDPYLADVNV 345

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  A+ ++ +   ++ +    +    +   +T LP   
Sbjct: 346 HPTKQEVRISKERELMALISQAIANALKEQDLIPDALENLAKSTIRRTEKPVQTTLPLKE 405

Query: 357 ------------KYATSLTNTQEKLFLQ---ENRLSTN---------------------- 379
                       K    + + Q  L  +   E R+  N                      
Sbjct: 406 NRLYYDRESQDFKLRPEVADPQRPLADETATEARIQENPVEKPTSAIKFAERKAVVYDEL 465

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +  +  D ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 466 DHPELDLASLDKAYDKLDGEEHSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 525

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E+ R+       + Q LL P I +    +   + +    L  +G+  E +G N + +RE
Sbjct: 526 YEEYRESIGDVDGSQQQLLVPYIFEFPADDLIRLQQRKHLLEEVGVYLEEYGANQLILRE 585

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 586 HPIWMKEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHTLDDYSARD 644

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L+ ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 645 LIYQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 679


>gi|189424059|ref|YP_001951236.1| DNA mismatch repair protein [Geobacter lovleyi SZ]
 gi|238692123|sp|B3E5Z2|MUTL_GEOLS RecName: Full=DNA mismatch repair protein mutL
 gi|189420318|gb|ACD94716.1| DNA mismatch repair protein MutL [Geobacter lovleyi SZ]
          Length = 589

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/595 (32%), Positives = 309/595 (51%), Gaps = 16/595 (2%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R LSE + N+IAAGE++ERP+  +KELIEN+LDA ++ +   I+ GG+   +++DNG GM
Sbjct: 6   RILSESLANKIAAGEVVERPASVVKELIENALDAGATDIRLEISAGGRRLIRVSDNGHGM 65

Query: 64  TSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           + E+  +A++RH TSKI  D     I T GFRGEALPSI +VS L L SR   +  G +I
Sbjct: 66  SREDALLALERHATSKIRSDQDLETILTLGFRGEALPSIASVSRLRLKSREAGSIEGTEI 125

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
              G  + SV    M  GT + V  LFF  PARL FL+S + E   + D++ RMAI+ P 
Sbjct: 126 TAEGGTVRSVTACGMAVGTDLTVEQLFFNTPARLKFLRSAETEAAHVGDLMVRMAISRPD 185

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           VSF++        ++      G+  +R+ ++   D       ++ ++    + GY   P 
Sbjct: 186 VSFSYYHDGRELLRVVP----GDLRQRLLKLAARD--ATLFPVDGETAAARISGYLAPPA 239

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
             R   +  + +INGR V+DK I   I  A+   +  GRYP+V L +E+   +VDVNVHP
Sbjct: 240 AARSTTSAMFTYINGRFVRDKVIQHAIMQAFRPILEKGRYPLVALFIELPAGEVDVNVHP 299

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
            K  +RFR    + + I   +++ +        S   ++  +    + A     P  ++ 
Sbjct: 300 TKHEVRFRRQAQVHDTIQGVLEEVLRD------SPWLQRREAPQRPEPARPYTTPPPSSH 353

Query: 362 LTNTQEKL--FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
               Q  L  F+    ++   +    +P    +     E  + ++       Q    YI+
Sbjct: 354 REGVQHALDRFMAATPVAPPRIYEQPEPYRPPEPPAASEPTSGYFSGLSVIGQFRAAYIL 413

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            Q  D LVI+DQHAA+ER+ FE+++  F +  I SQ LL P+ ++L   E   +  +   
Sbjct: 414 CQAEDRLVIIDQHAAYERVRFEQLKAGFATGGIESQRLLLPDTLELSFSEADTVRRYLNI 473

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG + E FG     I  +P I+++++  +LLRD++ E+ +  +        + +LA 
Sbjct: 474 LEPLGFELEEFGGQTWRINAVPRIVAEQDHCRLLRDLLAELAEQGSNAHFDQLRDELLAR 533

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC+  +R    ++  +M  LLR M++   S+ C HGRP   ++ L ++EK F R
Sbjct: 534 VACHSVVRGSHPLERRQMEELLRAMDRTDFSAHCPHGRPVSHEITLRELEKFFNR 588


>gi|308173668|ref|YP_003920373.1| DNA mismatch repair factor [Bacillus amyloliquefaciens DSM 7]
 gi|307606532|emb|CBI42903.1| DNA mismatch repair factor [Bacillus amyloliquefaciens DSM 7]
 gi|328553400|gb|AEB23892.1| DNA mismatch repair protein [Bacillus amyloliquefaciens TA208]
 gi|328911808|gb|AEB63404.1| DNA mismatch repair factor [Bacillus amyloliquefaciens LL3]
          Length = 625

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/626 (29%), Positives = 309/626 (49%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  I   G S  ++ DNG 
Sbjct: 3   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GMETEDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEIKT-SIGEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  + S +  +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 HLILQGGNMISEQRTSSRKGTEIIVTNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L+  S +  ++GY  +
Sbjct: 182 PEVSIRLRHQGK---NLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP-------- 351
           HP+K  +R    T +   I   I++   K+ +  S+ L KK   +  ++           
Sbjct: 299 HPSKLEVRLSKETELHELIRDGIKEVFQKQRLIPSAQLPKKSAPAPIKNEQQFMTFGESE 358

Query: 352 -------KTHLPKYATS--LTNTQEKLFLQENRLSTNDLLPS--------------DDPT 388
                  KT  P Y+     +  +E   + E     N+                   D  
Sbjct: 359 PERKLPEKTPEPSYSPMKLSSVVKEPAPVTEEEFHPNEADHEVPSETSMPEMAAPVSDIP 418

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
             E+    EE +     +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+   
Sbjct: 419 APEEEAVSEEIQEERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             +   Q ++ P        E  +I +H  +L  +G+  E FG N+  +R  PA   K  
Sbjct: 479 QVEPEVQDMIVPLTFHYAANEALIIEQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGE 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             +L+ +II +++D+     ++   E     M+C GSI++ R +++ E+  LL ++ +  
Sbjct: 539 EAELIEEIIQQVLDAKQID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTA 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   C HGRP  I     ++EK+F R
Sbjct: 598 DPFTCPHGRPIIIHHSTYEMEKMFKR 623


>gi|259046524|ref|ZP_05736925.1| DNA mismatch repair protein HexB [Granulicatella adiacens ATCC
           49175]
 gi|259036689|gb|EEW37944.1| DNA mismatch repair protein HexB [Granulicatella adiacens ATCC
           49175]
          Length = 636

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 183/626 (29%), Positives = 302/626 (48%), Gaps = 38/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++LS  + NQIAAGE+IERPS  +KEL+EN++DA S+R+E  I   G    +I DNG 
Sbjct: 3   TIKELSPLLTNQIAAGEVIERPSSVVKELLENAIDAGSTRIEIEIEESGLRKIRIQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  M+++RH TSK+   +    I T GFRGEAL SI AVS +TL +     ++G 
Sbjct: 63  GMTKEDARMSIKRHTTSKLYSPEQLFRIRTLGFRGEALASITAVSKVTLTTST-GEDSGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I   +I   + V    GT   V DLF+  PARL F+++ Q E   ITDV+ + ++++
Sbjct: 122 ELKIESGEIKEEKTVPPLKGTTFLVEDLFYNTPARLKFVRTLQTELAHITDVVSKASLSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F      +    +   S  G   + ++  IG       +  + +  +  + GYT +
Sbjct: 182 PEIAFILKNDGNL---LLQTSGKGELLQAVAGNIGPVNARKMLPFSGEDEDFKVSGYTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +FINGR +++  I   I   Y  T+ +GR+P+ ++ +E+D + VDVNV
Sbjct: 239 PELTRSNRNYLSIFINGRPIRNMAIAKAITLGYGSTLMVGRFPITIISIEMDVQLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT------ 353
           HP K  +R      +   I ++I++AI        S+         ++  APK       
Sbjct: 299 HPTKQEVRISKEQELSLVIQKAIREAIQGVQRIPESIEDLSFKRKENRVEAPKPVQQTLE 358

Query: 354 -------------HLPKYATSLTNTQEKLFLQENRLSTNDLLPS--DDPTYSEDNDPVE- 397
                          P Y+ ++    E L + +  +    ++     +      +D  + 
Sbjct: 359 WQLKTPIVEPTRVETPSYSENVREEVEVLPVDDAPIQVRKVVEPVLQEKLVDSHDDHADY 418

Query: 398 ---------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                    +     +       Q+H  Y+ +Q   GL ++DQHAA ER+ +E+ + +  
Sbjct: 419 LKLAEKIDTQPFEKEFPELHYFGQMHGTYLFAQNEKGLYMIDQHAAQERIKYEQFKVEIG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
                SQ L+ P +++  + +   + E    +   GI+ E FG N   I+  PA + K  
Sbjct: 479 QVGRVSQPLMVPILLEFSKKDSVKLEERLSLVEEFGIEMEPFGQNTFQIQSHPAWIKKGQ 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              ++ +IID I+      T+    E     M+C GSI++   +   E  +LL ++ K  
Sbjct: 539 EKAIIEEIIDFILADEKI-TVAKLREATAIMMSCKGSIKANHHLSEWEARQLLVDLAKCK 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N   C HGRP  + L   D+E LF R
Sbjct: 598 NPYNCPHGRPVLVHLTNKDLEHLFKR 623


>gi|28210986|ref|NP_781930.1| DNA mismatch repair protein [Clostridium tetani E88]
 gi|81841224|sp|Q895H3|MUTL_CLOTE RecName: Full=DNA mismatch repair protein mutL
 gi|28203425|gb|AAO35867.1| DNA mismatch repair protein mutL [Clostridium tetani E88]
          Length = 620

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/620 (29%), Positives = 319/620 (51%), Gaps = 31/620 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   N+IAAGE++ERP   +KEL+ENS+DAE+  +   +  GG+   +++D+G 
Sbjct: 3   RINILDECTFNKIAAGEVVERPFSVVKELVENSIDAEAKNITVEVKNGGQDLIKVSDDGA 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +++I  A   H TSKI   DD  +++T GFRGEALPSI ++S + L S+P    +G 
Sbjct: 63  GIYADDIQKAFLTHATSKILNIDDIFSLNTMGFRGEALPSIASISKILLKSKPLSETSGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G    S   V MN GT ++V DLF+ +PARL FLKS   E++LI+D+I+R+++A 
Sbjct: 123 EIYMEGGNFISFNDVGMNTGTTIKVTDLFYNVPARLKFLKSSSRESSLISDIIQRLSLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F                 +GN  + I  + G+  + N       S+ I++ GY G 
Sbjct: 183 PDIAFKLINNGKTVLNTY---GSGNLEDAIRVIYGKKTLENISYFESHSDIISVYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R ++   I + +  A+   + + ++P  V+ ++I P  +DVNV
Sbjct: 240 AELSRGSRNNQSIFVNKRYIKSGLITAAVENAFKSFLTINKFPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-----KGISTSSVLSKKMISSFHQDNAPKTH 354
           HP K+ I+F+   I+ +F+ +++ ++I K             + +       ++ +   +
Sbjct: 300 HPTKTEIKFKEDKIVFSFVFKTVHESIKKSLYKEFNEQIKEDVKEDNKEIIKENPSLFQN 359

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV------------------ 396
           + K    +      + ++   L  + L   ++      N  +                  
Sbjct: 360 VEKVQIPIDLKSASMDIERKSLVNSVLCNENNIVKDNINKNIYIDTKENLSENKLKNILK 419

Query: 397 --EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
              E   +         Q    YI++++   L I+DQHAAHE+++FE  R      ++ S
Sbjct: 420 ENTEDMVSKLPDMKIIGQFDNTYILAESVKNLYIIDQHAAHEKILFETYRDKIKKDEVKS 479

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P +++L   + +  +++ E  ++ G   E FG N I IRE+P I+ K +I  L  
Sbjct: 480 QLLLQPIVLELDSEDFSYYVDNKELFYKTGFNIEVFGENTINIREVPFIMGKPDINNLFM 539

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           DII+ I    +  T++ + ++I A +AC  ++++  K+   EM  L+ ++    +   C 
Sbjct: 540 DIINNIKAMGSGETIEVKYDSI-AMLACKSAVKAHDKLSKEEMEALINDLRFAKDPFNCP 598

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT IK+   ++EK F R
Sbjct: 599 HGRPTIIKITSLELEKKFKR 618


>gi|20089411|ref|NP_615486.1| DNA mismatch repair protein [Methanosarcina acetivorans C2A]
 gi|19914309|gb|AAM03966.1| DNA mismatch repair protein [Methanosarcina acetivorans C2A]
          Length = 656

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/654 (28%), Positives = 319/654 (48%), Gaps = 67/654 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L    IN+IAAGE+IERP+  +KEL++NS+DA ++ +   +  GGK    I DNG 
Sbjct: 7   KIRILDRDTINKIAAGEVIERPASVVKELVDNSIDAGATEIRIEVEKGGKHSILIRDNGC 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  ++ ++H TSK++  +D   + T GFRGEAL SI A++ + +++RPP+  TG 
Sbjct: 67  GMSKADALLSYEKHATSKLTRIEDLDTVSTMGFRGEALASITAIAKVEILTRPPEELTGT 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+         PGT V V++LF+  PAR  +LKS++ E   ITD + R+A+A 
Sbjct: 127 KLVIHGGKVQETSDAGTAPGTSVYVKELFYNTPARRKYLKSDRTELAHITDTVTRLALAN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SFT  +      +    + + +  + +  ++G D   + + L  ++ +  ++GY   
Sbjct: 187 PGISFTLLSEGKPVIR---STGSSDLFKSLVNLLGPDTARSMLPLEYRTEDFEIRGYVSK 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NRG ++Q YVF+N R V  + I   +R  Y   IP GRYPV VL L ++P +VDVNV
Sbjct: 244 PETNRGGSDQLYVFVNTRPVTSRAINMAVREGYYTKIPKGRYPVAVLALTLNPEEVDVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS----------SVLSKKMISSFHQDN 349
           HP K+ +RF     + + +I++++K +++ G++                   +S   Q  
Sbjct: 304 HPRKAEVRFSREKEVGDAVIRAVEKVLSEHGLAPEVREKEGKRLQKTFEDPGLSEKIQPQ 363

Query: 350 APKTHLPKYAT----------------------------SLTNTQEKLFLQENRLSTNDL 381
                LP+ A                              + +T+ +L   E  L ++  
Sbjct: 364 ETPATLPEKAAGKEIGVREEAKVSENSRLLKEKSEAYTYPIKDTERRLKKSERLLDSDGK 423

Query: 382 LPSDDPTYSEDNDPVEESEATHYQ---------------------LGIACAQIHQNYIIS 420
               D     +    +E E  + +                           Q+ + YI++
Sbjct: 424 AGIQDGLKKVEPASKKEEEKVNERIKAEEKQSQKLKPKANTDLLEDLRIIGQVSKMYILA 483

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +  + LVI+DQHAAHER+++E++ +     K   Q L+TP +I+L   E  L+ E+   L
Sbjct: 484 EKGEDLVIIDQHAAHERVLYEQVLRT---KKARVQELITPVMIELTPKERVLMEEYIPHL 540

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G     FG N   +  +P +  +     ++ D+I +++            E +  T+
Sbjct: 541 EEYGFGISEFGDNTYVVTFVPEVFGRLEDTGVIHDVISDLLAEGKVKKDTGISEKVSKTL 600

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AC  +I+ G    + +M  L+ +++   +   C HGRPT I     +++++F R
Sbjct: 601 ACRAAIKGGAACNTRQMEELIEQLKAAESPYSCPHGRPTVITFTKGELDRMFAR 654


>gi|255101104|ref|ZP_05330081.1| DNA mismatch repair protein [Clostridium difficile QCD-63q42]
          Length = 655

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 189/659 (28%), Positives = 301/659 (45%), Gaps = 71/659 (10%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I  L +  IN+IAAGE++ERPS  +KELIENS+DA ++++   I  GGKS  +ITD
Sbjct: 1   MKNIINILDDLTINKIAAGEVVERPSSVVKELIENSIDAGANKISIDIIDGGKSLIKITD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+ S E+  +  RH TSKI   DD  ++++ GFRGEAL SI AVS L + ++     
Sbjct: 61  NGIGIPSSEVEKSFLRHATSKIKKIDDLYDLYSLGFRGEALASISAVSKLEMTTKTKDEI 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G +I + G KI S  P+    GT + ++D+FF  PAR  FLKS   ET  I+D+I ++A
Sbjct: 121 IGTKIYVEGGKIISKEPIGSTNGTTIIIKDIFFNTPARQKFLKSTHAETINISDLINKLA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           I  P + F ++              +G     I  + G++   N +++  K N   + GY
Sbjct: 181 IGNPNIQFKYTNNNKQMLN---TPGDGKLVNTIRSIYGKEITENIIDVEFKCNHFKMNGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G     R N N  +++IN R V+ K I+  I  +Y   IP+G++ V  L +E+DP  +D
Sbjct: 238 IGNNNIYRSNKNLQHIYINKRFVKSKIIIDAITESYKSIIPIGKHAVCFLNIEVDPSCID 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VN+HP K  I+F     +   +   ++  +    +           +        +    
Sbjct: 298 VNIHPNKLEIKFEKEQEVYIELRDFLKVKLIHSNLIGKYATYSDKKTQPRIAINSREKST 357

Query: 357 KY-------------------------------ATSLTNTQEKLFLQENRLSTNDLLPSD 385
            Y                               +    N  + +    N    +D+   +
Sbjct: 358 DYKLRNNDLLESTPKKSNITKGKDEVIEVVTLSSEKPINEFQSVSEVLNASVEDDVKNIN 417

Query: 386 DPTYSEDNDPVEESEATHYQLGI------------------------------ACAQIHQ 415
             +    ND ++E                                            +  
Sbjct: 418 YLSEDSANDNIQEEFQVDGIKNEGNYYLGDSIKDSEEEYSCSSKRKFSLYGYSVIGVVFN 477

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YII    D + ++DQHAAHER+++E+  + F    I  Q LL P +I++   +   I  
Sbjct: 478 TYIILSKDDSMYLLDQHAAHERILYERYMEKFYRQDINMQILLDPVVIEVSNVDMLQIEN 537

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E   + G + E FG N I +R +P I       + +  IID I + ++ Y L+     
Sbjct: 538 NLELFMKFGFELEIFGNNHIMVRCVPTIFGVPETEKFILQIIDNIEEITSNYDLKGER-- 595

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             A+MAC  +I++  K+  IE+  LL ++EK  N   C HGRP  +++  ++IEK+F R
Sbjct: 596 -FASMACRSAIKANDKIYDIEIKSLLEQLEKCENPFTCPHGRPIMVEISKTEIEKMFKR 653


>gi|293364379|ref|ZP_06611105.1| DNA mismatch repair protein HexB [Streptococcus oralis ATCC 35037]
 gi|307702655|ref|ZP_07639607.1| DNA mismatch repair protein mutL [Streptococcus oralis ATCC 35037]
 gi|291317225|gb|EFE57652.1| DNA mismatch repair protein HexB [Streptococcus oralis ATCC 35037]
 gi|307623771|gb|EFO02756.1| DNA mismatch repair protein mutL [Streptococcus oralis ATCC 35037]
          Length = 649

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQITIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEKVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKERELMALLSEAISNSLKEQALIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E + +  D 
Sbjct: 361 TLYYEKTEVTRASQAEVADHQVELTEEGQDLTLFAKETLEQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMALLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|299535289|ref|ZP_07048612.1| DNA mismatch repair protein [Lysinibacillus fusiformis ZC1]
 gi|298729271|gb|EFI69823.1| DNA mismatch repair protein [Lysinibacillus fusiformis ZC1]
          Length = 620

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 177/621 (28%), Positives = 296/621 (47%), Gaps = 35/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + E + N+IAAGE++ERP+  +KEL+EN++DA S+ ++  +   G +  Q+ DNG G
Sbjct: 4   IQIMDEWLSNKIAAGEVVERPASVVKELVENAIDAGSTSIDVFLLEAGLTSIQVIDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  M+  RH TSKI    D   I T GFRGEAL SI +VS +TL++      +G  
Sbjct: 64  MDEEDALMSFSRHATSKIHQEHDLFRIRTLGFRGEALASIASVSKMTLIT--SNGESGTH 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G  I + +P  +  GT + V  LFF  PARL ++K+ Q E     D++ R+A+  P
Sbjct: 122 LELEGGHILTHKPGPLRKGTDLTVSQLFFNTPARLKYMKTIQTELGHTIDLMNRLALGNP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G+  + ++ + G       V    +S++  + G+  +P
Sbjct: 182 QIAFRLLHNGQ---QLLQTNGRGDVQQVLAAIYGIHNAKKMVSFQGESHDYRISGFVSLP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N   +F+NGR V+   +   I  AY   +P+ R+P+VVL +E DP   DVNVH
Sbjct: 239 EVTRASKNYMTLFVNGRWVKHYLVQKAIVDAYHTYLPIERFPIVVLYIEGDPYLTDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK--- 357
           PAK  IR      +   I ++I++ I            +K++    +        PK   
Sbjct: 299 PAKHQIRLSKEADLLKLIEETIRETIRNIIRVPQMEKKEKIVKPATEQLNIWKPAPKIDV 358

Query: 358 ----------------YATSLTNTQEKLFLQENRLSTNDLLPS------DDPTYSEDNDP 395
                              +L    E   +   R  +  L P       D+ T +E ++ 
Sbjct: 359 EKMNAIVEKLYDVQTIQENNLEQIDEPKPISTVREESWQLTPQIEAETIDEVTIAEQSEI 418

Query: 396 VEESEATHYQL-GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS-TKIT 453
           +EE              QIH  YI++Q  DG  ++DQHAA ER+ +E  R+         
Sbjct: 419 LEEMPTKEPFPELEVVGQIHGTYIVAQMEDGFYLIDQHAAQERIKYEFFREKVGQVNPHE 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P        E  ++ EH  +L  +G+  E FG ++  +RE P+   +    +++
Sbjct: 479 RQALLLPLTFHYAADEALILREHRHELEAVGVFLEEFGQSSFVVREHPSWFPQGEEQEII 538

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            D+I++++ +     ++   E     M+C  SI++   +   +M  LLR++    N   C
Sbjct: 539 EDLIEQVLTTKKAD-IKKLREAAAIMMSCKKSIKANYYLTKEQMETLLRDLRNADNPFTC 597

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRP  I     ++EK+F R
Sbjct: 598 PHGRPVLIHFTSYEVEKMFKR 618


>gi|126699585|ref|YP_001088482.1| DNA mismatch repair protein [Clostridium difficile 630]
 gi|115251022|emb|CAJ68851.1| DNA mismatch repair protein MutL [Clostridium difficile]
          Length = 655

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 189/659 (28%), Positives = 301/659 (45%), Gaps = 71/659 (10%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I  L +  IN+IAAGE++ERPS  +KELIENS+DA ++++   I  GGKS  +ITD
Sbjct: 1   MKNIINILDDLTINKIAAGEVVERPSSVVKELIENSIDAGANKISIDIIDGGKSLIKITD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+ S E+  +  RH TSKI   DD  ++++ GFRGEAL SI AVS L + ++     
Sbjct: 61  NGIGIPSSEVEKSFLRHATSKIKKIDDLYDLYSLGFRGEALASISAVSKLEMTTKTKDEI 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G +I + G KI S  P+    GT + ++D+FF  PAR  FLKS   ET  I+D+I ++A
Sbjct: 121 IGTKIYVEGGKIISKEPIGFTNGTTIIIKDIFFNTPARQKFLKSTHAETINISDLINKLA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           I  P + F ++              +G     I  + G++   N +++  K N   + GY
Sbjct: 181 IGNPNIQFKYTNNNKQMLN---TPGDGKLVNTIRSIYGKEITENIIDVEFKCNHFKMNGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G     R N N  +++IN R V+ K I+  I  +Y   IP+G++ V  L +E+DP  +D
Sbjct: 238 IGNNNIYRSNKNLQHIYINKRFVKSKIIIDAITESYKSIIPIGKHAVCFLNIEVDPSCID 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VN+HP K  I+F     +   +   ++  +    +           +        +    
Sbjct: 298 VNIHPNKLEIKFEKEQEVYIELRDFLKVKLIHSNLIGKYATYSDKKTQPRIAINSREKST 357

Query: 357 KY-------------------------------ATSLTNTQEKLFLQENRLSTNDLLPSD 385
            Y                               +    N  + +    N    +D+   +
Sbjct: 358 DYKLRNNDLLESTPKNSNITKGKDEVIEVVTLSSEKPINEFQSVSEVLNASVEDDVKNIN 417

Query: 386 DPTYSEDNDPVEESEATHYQLGI------------------------------ACAQIHQ 415
             +    ND ++E                                            +  
Sbjct: 418 YLSEDSANDNIQEEFQVDGIKNEGNYYLGDSIKDSEEEYLCSSKRKFSLYGYSVIGVVFN 477

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YII    D + ++DQHAAHER+++E+  + F    I  Q LL P +I++   +   I  
Sbjct: 478 TYIILSKDDSMYLLDQHAAHERILYERYMEKFYRQDINMQILLDPVVIEVSNVDMLQIEN 537

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E   + G + E FG N I +R +P I       + +  IID I + ++ Y L+     
Sbjct: 538 NLELFMKFGFELEIFGNNHIMVRCVPTIFGVPETEKFILQIIDNIEEITSNYDLKGER-- 595

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             A+MAC  +I++  K+  IE+  LL ++EK  N   C HGRP  +++  ++IEK+F R
Sbjct: 596 -FASMACRSAIKANDKIYDIEIKSLLEQLEKCENPFTCPHGRPIMVEISKTEIEKMFKR 653


>gi|306828751|ref|ZP_07461943.1| DNA mismatch repair protein HexB [Streptococcus mitis ATCC 6249]
 gi|304428929|gb|EFM32017.1| DNA mismatch repair protein HexB [Streptococcus mitis ATCC 6249]
          Length = 649

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 179/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQITIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEKVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKERELMALVSEAISNSLKEQALIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E + +  D 
Sbjct: 361 TLYYEKTELSKPSQAEVADHQVELTEEGKDLTLFAQETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLRERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKQSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|255306972|ref|ZP_05351143.1| DNA mismatch repair protein [Clostridium difficile ATCC 43255]
          Length = 655

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 189/659 (28%), Positives = 301/659 (45%), Gaps = 71/659 (10%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I  L +  IN+IAAGE++ERPS  +KELIENS+DA ++++   I  GGKS  +ITD
Sbjct: 1   MKNIINILDDLTINKIAAGEVVERPSSVVKELIENSIDAGANKISIDIIDGGKSLIKITD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+ S E+  +  RH TSKI   DD  ++++ GFRGEAL SI AVS L + ++     
Sbjct: 61  NGIGIPSSEVEKSFLRHATSKIKKIDDLYDLYSLGFRGEALASISAVSKLEMTTKTKDEI 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G +I + G KI S  P+    GT + ++D+FF  PAR  FLKS   ET  I+D+I ++A
Sbjct: 121 IGTKIYVEGGKIISKEPIGSTNGTTIIIKDIFFNTPARQKFLKSTHAETINISDLINKLA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           I  P + F ++              +G     I  + G++   N +++  K N   + GY
Sbjct: 181 IGNPNIQFKYTNNNKQMLN---TPGDGKLVNTIRSIYGKEITENIIDVEFKCNHFKMNGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G     R N N  +++IN R V+ K I+  I  +Y   IP+G++ V  L +E+DP  +D
Sbjct: 238 IGNNNIYRSNKNLQHIYINKRFVKSKIIIDAITESYKSIIPIGKHAVCFLNIEVDPSCID 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VN+HP K  I+F     +   +   ++  +    +           +        +    
Sbjct: 298 VNIHPNKLEIKFEKEQEVYIELRDFLKVKLIHSNLIGKYATYSDKKTQPRIAINSREKST 357

Query: 357 KY-------------------------------ATSLTNTQEKLFLQENRLSTNDLLPSD 385
            Y                               +    N  + +    N    +D+   +
Sbjct: 358 DYKLRNNDLLESTHKNSNITKGKDEVIEVVTLSSEKPINEFQSVSEVLNASVEDDVKNIN 417

Query: 386 DPTYSEDNDPVEESEATHYQLGI------------------------------ACAQIHQ 415
             +    ND ++E                                            +  
Sbjct: 418 YLSEDSVNDNIQEEFQVDGIKNEGNYYLGDSIKDSEEEYSCSSKLKFSLYGYSVIGVVFN 477

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YII    D + ++DQHAAHER+++E+  + F    I  Q LL P +I++   +   I  
Sbjct: 478 TYIILSKDDSMYLLDQHAAHERILYERYMEKFYRQDINMQILLDPVVIEVSNVDMLQIEN 537

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E   + G + E FG N I +R +P I       + +  IID I + ++ Y L+     
Sbjct: 538 NLELFMKFGFELEIFGNNHIMVRCVPTIFGVPETEKFILQIIDNIEEITSNYDLKGER-- 595

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             A+MAC  +I++  K+  IE+  LL ++EK  N   C HGRP  +++  ++IEK+F R
Sbjct: 596 -FASMACRSAIKANDKIYDIEIKSLLEQLEKCENPFTCPHGRPIMVEISKTEIEKMFKR 653


>gi|254975572|ref|ZP_05272044.1| DNA mismatch repair protein [Clostridium difficile QCD-66c26]
 gi|255092960|ref|ZP_05322438.1| DNA mismatch repair protein [Clostridium difficile CIP 107932]
 gi|255314701|ref|ZP_05356284.1| DNA mismatch repair protein [Clostridium difficile QCD-76w55]
 gi|255517376|ref|ZP_05385052.1| DNA mismatch repair protein [Clostridium difficile QCD-97b34]
 gi|255650482|ref|ZP_05397384.1| DNA mismatch repair protein [Clostridium difficile QCD-37x79]
 gi|260683592|ref|YP_003214877.1| DNA mismatch repair protein [Clostridium difficile CD196]
 gi|260687252|ref|YP_003218386.1| DNA mismatch repair protein [Clostridium difficile R20291]
 gi|306520447|ref|ZP_07406794.1| DNA mismatch repair protein [Clostridium difficile QCD-32g58]
 gi|260209755|emb|CBA63546.1| DNA mismatch repair protein [Clostridium difficile CD196]
 gi|260213269|emb|CBE04803.1| DNA mismatch repair protein [Clostridium difficile R20291]
          Length = 655

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 189/659 (28%), Positives = 301/659 (45%), Gaps = 71/659 (10%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I  L +  IN+IAAGE++ERPS  +KELIENS+DA ++++   I  GGKS  +ITD
Sbjct: 1   MKNIINILDDLTINKIAAGEVVERPSSVVKELIENSIDAGANKISIDIIDGGKSLIKITD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+ S E+  +  RH TSKI   DD  ++++ GFRGEAL SI AVS L + ++     
Sbjct: 61  NGIGIPSSEVEKSFLRHATSKIKKIDDLYDLYSLGFRGEALASISAVSKLEMTTKTKDEI 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G +I + G KI S  P+    GT + ++D+FF  PAR  FLKS   ET  I+D+I ++A
Sbjct: 121 IGTKIYVEGGKIISKEPIGSTNGTTIIIKDIFFNTPARQKFLKSTHAETINISDLINKLA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           I  P + F ++              +G     I  + G++   N +++  K N   + GY
Sbjct: 181 IGNPNIQFKYTNNNKQMLN---TPGDGKLVNTIRSIYGKEITENIIDVEFKCNHFKMNGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G     R N N  +++IN R V+ K I+  I  +Y   IP+G++ V  L +E+DP  +D
Sbjct: 238 IGNNNIYRSNKNLQHIYINKRFVKSKIIIDAITESYKSIIPIGKHAVCFLNIEVDPSCID 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VN+HP K  I+F     +   +   ++  +    +           +        +    
Sbjct: 298 VNIHPNKLEIKFEKEQEVYIELRDFLKVKLIHSNLIGKYATYSDKKTQPRIAINSREKST 357

Query: 357 KY-------------------------------ATSLTNTQEKLFLQENRLSTNDLLPSD 385
            Y                               +    N  + +    N    +D+   +
Sbjct: 358 DYKLRNNDLLESTPKNSNITKDKDEVIEVVTLSSEKPINEFQSVSEVLNASVEDDVKNIN 417

Query: 386 DPTYSEDNDPVEESEATHYQLGI------------------------------ACAQIHQ 415
             +    ND ++E                                            +  
Sbjct: 418 YLSEDSANDNIQEEFQVDGIKNEGNYYLGDSIKDSEEEYLCSSKRKFSLYGYSVIGVVFN 477

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YII    D + ++DQHAAHER+++E+  + F    I  Q LL P +I++   +   I  
Sbjct: 478 TYIILSKDDSMYLLDQHAAHERILYERYMEKFYRQDINMQILLDPVVIEVSNVDMLQIEN 537

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E   + G + E FG N I +R +P I       + +  IID I + ++ Y L+     
Sbjct: 538 NLELFMKFGFELEIFGNNHIMVRCVPTIFGVPETEKFILQIIDNIEEITSNYDLKGER-- 595

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             A+MAC  +I++  K+  IE+  LL ++EK  N   C HGRP  +++  ++IEK+F R
Sbjct: 596 -FASMACRSAIKANDKIYDIEIKSLLEQLEKCENPFTCPHGRPIMVEISKTEIEKMFKR 653


>gi|303259226|ref|ZP_07345204.1| DNA mismatch repair protein [Streptococcus pneumoniae SP-BS293]
 gi|303260982|ref|ZP_07346931.1| DNA mismatch repair protein [Streptococcus pneumoniae SP14-BS292]
 gi|303263309|ref|ZP_07349232.1| DNA mismatch repair protein [Streptococcus pneumoniae BS397]
 gi|303265474|ref|ZP_07351374.1| DNA mismatch repair protein [Streptococcus pneumoniae BS457]
 gi|303267968|ref|ZP_07353770.1| DNA mismatch repair protein [Streptococcus pneumoniae BS458]
 gi|302637819|gb|EFL68305.1| DNA mismatch repair protein [Streptococcus pneumoniae SP14-BS292]
 gi|302639644|gb|EFL70101.1| DNA mismatch repair protein [Streptococcus pneumoniae SP-BS293]
 gi|302642664|gb|EFL73009.1| DNA mismatch repair protein [Streptococcus pneumoniae BS458]
 gi|302644914|gb|EFL75161.1| DNA mismatch repair protein [Streptococcus pneumoniae BS457]
 gi|302647082|gb|EFL77306.1| DNA mismatch repair protein [Streptococcus pneumoniae BS397]
          Length = 649

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL +     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLSTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           + SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 ETSFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAISNSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   +  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPTRPSQAEVADYQVELTEERQDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+       + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGDVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|320529999|ref|ZP_08031075.1| DNA mismatch repair protein [Selenomonas artemidis F0399]
 gi|320137796|gb|EFW29702.1| DNA mismatch repair protein [Selenomonas artemidis F0399]
          Length = 621

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/620 (30%), Positives = 302/620 (48%), Gaps = 33/620 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE++ERP+  +KEL+EN++DA ++ +E  I GGG SF ++TDNG 
Sbjct: 3   RIHVLDDTTINKIAAGEVVERPASVVKELVENAIDAGATAIEIEIMGGGTSFIRVTDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +   A+ RH TSKIS+  D   + T GFRGEALP+I +VS  +L++R    + G 
Sbjct: 63  GMERSDAETAILRHATSKISNVADLQTVGTLGFRGEALPTIASVSRFSLITRTADADLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K + +     + GT V V DLFF  PAR  FLK ++ E   I+D +  +A++ 
Sbjct: 123 RVEILGGKTTEIEDAGCDVGTTVRVEDLFFNTPARKKFLKMDRTEAGKISDYVIMLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQGYT 237
           P ++F F             + + +    I  + G D     +     +++ +I + GY 
Sbjct: 183 PDIAFRFVNNNRLTLM---TAGDDSLRRAIESIYGGDAAGALIPLDFTDEAGDIRITGYI 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+  R +       +NGRT+Q++ I   I   Y   +P   +P+ VL +E+  R +DV
Sbjct: 240 SKPSMIRSSRAWQTYIVNGRTIQNRAIAKAIDNVYRALVPKMGFPLAVLRIEVPQRTIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--------N 349
           NVHP K+ ++F +   I   + +++Q A+      T+S+ +      FH +         
Sbjct: 300 NVHPQKTEMKFEDEGRIFKAVYKTVQGAVRGAAGETASIAAAVEKPKFHYESMPLRMPVT 359

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-----PVEESEATHY 404
            P   +P          + +     R ++ DL    D      ++       EES   + 
Sbjct: 360 PPPASVPHTYAPTAMPAQTVHEAAQRAASADLRSVQDIVGRARSEERAALMAEESPGAYR 419

Query: 405 QL----------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                        I   Q+   YI++Q+T  L I+DQHAAHER++F++      +  I S
Sbjct: 420 AEPAPAGTIESGLIPIGQVDLTYIVAQSTRALYIIDQHAAHERILFDRF--CALAEGIPS 477

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q +L   I+     E   I E+ E   RLG + E  G     + E PA +       ++R
Sbjct: 478 QQMLVHAILSFDARETQYIEENAELFSRLGFRMEPAGDREYRLTESPADVPTDEAEDVIR 537

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +I+  + +       + R    LATMAC  +I++G ++   +M  LL E+   P    C 
Sbjct: 538 EILVSLGELHAATPAELRQAG-LATMACRAAIKAGEELSFRQMEILLEELRTTPFPFTCP 596

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT +    +D+ K+F R
Sbjct: 597 HGRPTILTFDTTDLAKMFKR 616


>gi|251783478|ref|YP_002997783.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242392110|dbj|BAH82569.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 660

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/648 (27%), Positives = 314/648 (48%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS+V   I   G    QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQVTIDIEESGLKKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   ++N G+
Sbjct: 63  GMSPEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEDNHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I ++   +   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLVAIGGEIETLEETSTPVGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSFT  +      ++   S  G+  + I+ + G +     + ++    +  + GY  +
Sbjct: 183 PEVSFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTAKKMIAISNADLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYMTILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP  +
Sbjct: 300 HPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPLQS 359

Query: 360 TSL--TNTQEKLFLQENRLST--------------------------------------- 378
             L     +   F++E+ +S                                        
Sbjct: 360 KGLYYDPQRNDFFVKESDVSEKIPESNFHNTEIDKTVKDQRTEQFPDLGENTGFSSVKRA 419

Query: 379 ------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                             +    S+    +E  E + +       Q+H  Y+ +Q  DGL
Sbjct: 420 SRSQDEITDADHPGFDLKNKQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKDGL 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 480 FIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVGIF 539

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 540 LEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKRSI 598

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 599 KANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|254293353|ref|YP_003059376.1| DNA mismatch repair protein [Hirschia baltica ATCC 49814]
 gi|254041884|gb|ACT58679.1| DNA mismatch repair protein MutL [Hirschia baltica ATCC 49814]
          Length = 667

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/653 (36%), Positives = 362/653 (55%), Gaps = 61/653 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L    IN+IAAGE++ERP+ A KEL+EN+LDA +  +  +I GGG S   I D+G G
Sbjct: 14  IHRLPADAINRIAAGEVVERPAAAAKELMENALDAGARHIRVLIEGGGLSRMVIEDDGKG 73

Query: 63  MTSEEIPMAVQRHCTSKISD------DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           M++EE+P+A++RH TSK+        D  NIHT GFRGEALPSIG+VS +T+ SR    +
Sbjct: 74  MSAEELPIAIERHATSKLQADAEGRVDLLNIHTLGFRGEALPSIGSVSRMTITSRAKGAD 133

Query: 117 TGAQIAISGEKISSVRPVAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
              Q+ I G  +    P A     + GT +EVRDLF+  PARL F+KSE+ ET  +TD +
Sbjct: 134 EAYQLRIEGGVVEGPLPAAWTGLSDSGTRIEVRDLFYATPARLKFMKSERAETMALTDTV 193

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQST--NGNFPERISQVIGEDFINNAVELNEKSNE 230
           +R+A+A   V     +       +  +         +R+  ++G++F  NA E++ +   
Sbjct: 194 KRLAMANADVGMVLESNGRKVINLAPEDGAFEEARLKRLGAIMGKEFRENACEIDAEREG 253

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           + + G+ G+PT NRGNA   Y+F+NGR V+D+ +   IR AY + +   R+P+  L +++
Sbjct: 254 VFVTGFAGLPTLNRGNAQHQYLFVNGRPVKDRLLTGVIRAAYQDFLARDRHPMAALFVDL 313

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-------- 342
            P  VDVNVHPAK+ +RFR+   +R  +I +++  +   G   S+ ++   +        
Sbjct: 314 HPEFVDVNVHPAKTEVRFRDAGNVRGLLIGALRHTLAAAGHRASTTVAGDALGRVITETQ 373

Query: 343 -----------SSFHQDNAPKTHL---------------PKYATSLTN------------ 364
                              P T +               P  + S               
Sbjct: 374 ARQAELQMGPNGPMQSAYQPGTSVLQSTMGRSASGGQWRPSASPSSDEINTYLDATGLSG 433

Query: 365 -TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--SEATHYQLGIACAQIHQNYIISQ 421
             +E    Q N  S      SD     E N+   +   E + + LG+A AQ+H+ Y+++Q
Sbjct: 434 GFREDAPSQYNGQSGAFAATSDMSARVEPNEMESQRAQELSRFPLGVARAQLHETYVVAQ 493

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           T DG+VIVDQHAAHERL++E+M++      +  Q LL PEI++L E E   ++   E+L 
Sbjct: 494 TDDGIVIVDQHAAHERLVYERMKRQMELDGVKRQALLIPEIVELTEDEAMRVLSRSEELL 553

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            LG++ E FG   IA+R  PA+    +   L++D+ D+  +      L++R E ++  MA
Sbjct: 554 ELGLEIEPFGVGCIAVRATPALFGDMDAVGLIKDLADDFAEYDAGLALKERFEEVMGNMA 613

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C GS+R+GR++   EMN LLR+ME  P+S QCNHGRPT+++LKL+DIE+LFGR
Sbjct: 614 CRGSVRAGRRLTGEEMNSLLRQMENTPHSGQCNHGRPTYVELKLADIERLFGR 666


>gi|78187823|ref|YP_375866.1| DNA mismatch repair protein [Chlorobium luteolum DSM 273]
 gi|123743593|sp|Q3B1F8|MUTL_PELLD RecName: Full=DNA mismatch repair protein mutL
 gi|78167725|gb|ABB24823.1| DNA mismatch repair protein MutL [Chlorobium luteolum DSM 273]
          Length = 626

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 177/632 (28%), Positives = 303/632 (47%), Gaps = 45/632 (7%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L + + N+I+AGE+++RP+  +KEL+EN++D+ + R+  VI   G+   +I DN
Sbjct: 1   MPSIARLPDNVANKISAGEVVQRPASVVKELLENAIDSGADRISVVIKDAGRELVRIIDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+  +  ++V+R  TSK+   DD   + T GFRGEAL SI +VSH  L +R      
Sbjct: 61  GRGMSRADALLSVERFATSKLRDVDDLDTLGTLGFRGEALASISSVSHFELRTRMTDAPV 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +    G        V    GT V VR+LF+ +PAR  FLKS   E   I +++R  ++
Sbjct: 121 ALRFRYEGGIAVEESEVQGEAGTSVSVRNLFYNVPARRKFLKSNATEYGHIFELVRSFSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           AYP++ +         +         +  ER+    G+ F ++ +E+ E+++ ++++GY 
Sbjct: 181 AYPEIQWQLLNDDQELFNFRT----SDMLERLDTFYGKGFADSLIEVGEENDYLSIRGYI 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   +      Y FIN R +Q++ +   ++ AYAE +   + P  +L L IDP +VDV
Sbjct: 237 GRPALQKRKKLDQYFFINRRPIQNRMLTQALQQAYAELLVERQAPFALLFLGIDPSRVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------- 344
           NVHPAK  +RF +   +RN     I++A+     S       +   +             
Sbjct: 297 NVHPAKLEVRFDDERSVRNMFYPVIKRAVTLHDFSPDLAAGGRTSQAGDDSASRGFTHAG 356

Query: 345 ----------------------FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
                                 +           + A    + QE +F      +  + +
Sbjct: 357 GGGFRTLAFQEVPERAITTGELYGSYREGAFGSSRPAVPQPSHQEVMFPVPEVPAAREDI 416

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                  S  ++  E +            Q+H  Y+I Q   GL+I+DQH AHER+++E+
Sbjct: 417 --SQLLRSSMHEGPEGAGVEPKGEEPKIWQLHNKYLICQIKTGLMIIDQHVAHERVLYER 474

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
             +   S    SQ LL P+ ++    E  +  E  +DL+RLG     FG  A+ I  +P 
Sbjct: 475 AVEVMESRVPNSQQLLFPQKVEFRPWEYEVFEEIKDDLYRLGFNLRSFGTRAVMIEGVPQ 534

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            +   +   +++D+I E  +++T   L+ R +N+  + +C  +I +G+K+   EM  L+ 
Sbjct: 535 DVRPGSEATIMQDMIAEYRENATRLRLE-RRDNLAKSYSCRNAIMAGQKLSMGEMRTLID 593

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +        C HGRP  IK+ L++++ +FGR
Sbjct: 594 NLFATREPYSCPHGRPVIIKMTLTELDHMFGR 625


>gi|42521099|ref|NP_967014.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410840|gb|AAS14948.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 608

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 236/614 (38%), Positives = 352/614 (57%), Gaps = 27/614 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA S  +E  I  GG++   +TD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIEIKIESGGRNLIIVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+  + N   
Sbjct: 61  NGVEKNDLELAFMRHATSKLSDNELIEIKHLGFRGEALPSIAAVSRIKLSSKAREANEAW 120

Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I+  G EKI    P +++ GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SISYEGGEKIGEQTPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K+   +   +   R+ +V  E+F  N++E+NE+ + I L G+  
Sbjct: 181 NYHIGFTLTSGNK---KLLKYAKQTSLFHRLCEV-EEEFQGNSLEINEEEDGIKLTGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NRG + Q Y F+NGR ++D  ++  +R AY + IP  RYP   L LEI   QVDVN
Sbjct: 237 KPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK---KMISSFHQDNAPKTHL 355
           VHP KS +RF+N  +I   + + + KA++++  +  +   K    +   F + N  K   
Sbjct: 297 VHPNKSEVRFQNKKLIYEIMTRGLIKALSRRIGTFPAHDQKMDSTLPDPFDKPNVQKEFY 356

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT------------- 402
            K  +   N   K F   N  +      S    Y+       ++E               
Sbjct: 357 EKRPSPFKNQLIKEFASPNEKAKGLSEQSKSFDYTGIQKFPSQAETMVLEKKVLEQVDLI 416

Query: 403 -HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
             + LG A  Q++  YII++  D L+IVDQHAAHERL++E ++     + +  Q LL PE
Sbjct: 417 ESHPLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---QKSSVKRQKLLLPE 473

Query: 462 IIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            +++  +    +I  + + L  +G   E    N + ++EIPAIL   ++ ++L +I+D +
Sbjct: 474 TVEIKNQAGMEMIEIYKDKLFEMGFDIEIKPENKVIVKEIPAILGAIDVKEMLINIVDRL 533

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            +   T  ++D++  ILAT+ACYGSIR+GRKM+  EMN LLR+MEK P S QCNHGRPT+
Sbjct: 534 TEIEDTLPVEDKVNKILATIACYGSIRAGRKMRFEEMNVLLRQMEKTPYSGQCNHGRPTY 593

Query: 581 IKLKLSDIEKLFGR 594
           I++KLSDIEKLF R
Sbjct: 594 IEMKLSDIEKLFER 607


>gi|300172902|ref|YP_003772067.1| DNA mismatch repair protein MutL [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887280|emb|CBL91248.1| DNA mismatch repair protein MutL [Leuconostoc gasicomitatum LMG
           18811]
          Length = 661

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/647 (27%), Positives = 308/647 (47%), Gaps = 58/647 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+EN++D+ ++++E ++   G++  ++ DNG 
Sbjct: 3   KIHELSNLLANQIAAGEVIERPASVVKELVENAIDSGATQIEVIVEDAGETLIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+A  RH TSKI    D  NI + GFRGEALPSI A++ +TL +       G 
Sbjct: 63  GIEPEDVPLAFTRHATSKIMNRHDLFNIVSLGFRGEALPSIAAIADVTLNTTTELATQGL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G K  S  P     GT++ VRDLF+  PARL +LK  Q E + + D++ R+A++Y
Sbjct: 123 MYHIKGGKQVSATPANGRRGTVISVRDLFYNTPARLKYLKRPQTELSRVADIMNRLALSY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++FT  +       +   + NGN  + I+ + G D     +    + ++  + GY  +
Sbjct: 183 TNIAFTVVSDGR---DLLKTTGNGNQQQVIAAIYGRDTAQKMLSFAGEDDDFNVTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG+     + +NGR +++  + + I   Y   + +GR+P+ V+ +  DP  +DVNV
Sbjct: 240 PELTRGSREYLTILVNGRFIKNFTVSNAIIHGYGSKLMIGRFPMGVININTDPLLIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HP KS IR    T +   ++Q+I+  +  + +   +   L  +   + ++   P    P 
Sbjct: 300 HPQKSEIRLSKETELSELLVQTIKARLADENLIPDAYENLYGQTKKTEYKRVQPAQIAPW 359

Query: 358 YATSLTNTQEKLFLQE-------------------------------------------- 373
             T+L   ++                                                  
Sbjct: 360 LNTNLATVKQPDSKTNITINTGSDIAGISITKRAQLSARSVSTFVTKYEHEATLPVFDTP 419

Query: 374 ------NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
                   ++T     +D    S++   V     + +       Q+H  ++ +QT DGL 
Sbjct: 420 VTEQVTESVATYQSPFTDIAVKSQETLDVTPQRPSGFPDLSYIGQMHGTFLFAQTEDGLF 479

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQHAA ER+ +E  RQ         Q LL P +I+    +   I +H++DL  +G+  
Sbjct: 480 LIDQHAAQERINYEYYRQKIGEVSDDKQRLLVPIVINYTASDMLKIADHEQDLLHVGLTV 539

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
             FGP ++ IRE P           +R++ID I+      T+ +  E     M+C  +IR
Sbjct: 540 MPFGPTSVIIREHPTWFENGQEEDTIREMIDWILRDG-ALTVAEFREKAAIMMSCKRAIR 598

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   +   +   LL+ +  + N   C HGRP   +  L+++EK+F R
Sbjct: 599 ANMHLSDAQARTLLQTLANSENPYNCPHGRPVVTQFTLTEMEKMFKR 645


>gi|307711077|ref|ZP_07647499.1| DNA mismatch repair protein mutL [Streptococcus mitis SK321]
 gi|307617039|gb|EFN96217.1| DNA mismatch repair protein mutL [Streptococcus mitis SK321]
          Length = 649

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAMDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  + P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEIIPATSPAGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I K++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAISKSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQAEVADYQVELTDEGQDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+       + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGDVDQSQQQLLVPYIFEFPADDALRLKERMAHLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|312866835|ref|ZP_07727048.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus parasanguinis F0405]
 gi|311097618|gb|EFQ55849.1| DNA mismatch repair protein, C-terminal domain protein
           [Streptococcus parasanguinis F0405]
          Length = 647

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 182/635 (28%), Positives = 307/635 (48%), Gaps = 46/635 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + NQIAAGE+IERP+  +KEL+ENS+DA +S++   I   G    +ITDNG 
Sbjct: 3   QIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGASQIIVEIEEAGLKSIRITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +A++RH TSKI    D   I T GFRGEA+PSI +VS LTL++       G 
Sbjct: 63  GIAQDEVALALRRHATSKIKSQADLFRIRTLGFRGEAMPSIASVSILTLLTAQEGAAHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G +I  V P     GT + V DLFF  PARL +LKS+Q E + I D++ R+++A+
Sbjct: 123 KLVAKGGEIEEVEPATSPVGTKITVEDLFFNTPARLKYLKSQQAELSHIVDILNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT         K    +  GN  + I+ V G       V +  +  +  + G+  +
Sbjct: 183 PEIAFTLINDGKEMTK---TAGTGNLRQAIAGVYGLASAKKMVAIENRDLDFEVTGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +FINGR +++  +   I   Y   + +GR+P+ ++ ++IDP   DVNV
Sbjct: 240 PELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAIINIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HP K  +R      +   I Q+I  A+ ++ +   ++ +    +    +   +T LP   
Sbjct: 300 HPTKQEVRISKERELMALISQAIANALKEQDLIPDALENLAKSTIRRTEKLVQTTLPLKE 359

Query: 357 ------------KYATSLTNTQEKLFLQ---ENRLSTN---------------------- 379
                       K    + + Q  L  +   E R+  N                      
Sbjct: 360 NRLYYDRESQDFKLRPEVADPQRPLADETATEARIQENPVEKPTSAIKFAERKTAVYDEL 419

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D    D  +  +  D ++  E + +       Q+H  Y+ +Q   GL I+DQHAA ER+ 
Sbjct: 420 DHPELDLASLDKAYDKLDGEEHSTFPELEYFGQMHGTYLFAQGNGGLYIIDQHAAQERVK 479

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E+ R+       + Q LL P I +    +   + +    L  +G+  E +G N + +RE
Sbjct: 480 YEEYRESIGDVDGSQQQLLVPYIFEFPADDLIRLQQRKHLLEEVGVYLEEYGANQLILRE 539

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P  + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       
Sbjct: 540 HPIWMKEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHTLDDYSARD 598

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L+ ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 599 LIYQLSQCDNPYNCPHGRPVLVNFTKSDMEKMFRR 633


>gi|225853787|ref|YP_002735299.1| DNA mismatch repair protein [Streptococcus pneumoniae JJA]
 gi|254766179|sp|C1CBX8|MUTL_STRZJ RecName: Full=DNA mismatch repair protein mutL
 gi|225722823|gb|ACO18676.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae JJA]
          Length = 649

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALCLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|307710211|ref|ZP_07646654.1| DNA mismatch repair protein mutL [Streptococcus mitis SK564]
 gi|307618973|gb|EFN98106.1| DNA mismatch repair protein mutL [Streptococcus mitis SK564]
          Length = 641

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 177/628 (28%), Positives = 309/628 (49%), Gaps = 40/628 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA S+++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSNQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAMDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  + P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEIIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 361 SLTNT-------------------------------QEKLFLQENRLSTNDLLPSDD--- 386
           +L                                    KL   E + +  D L   +   
Sbjct: 361 TLYYEKAEVADYQVELTEEGQDLTLFAKETLDQLTKPAKLHFAERKPANYDQLDHPELDL 420

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
            +  +  D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+ +E+ R+ 
Sbjct: 421 TSLDKAYDKLEREESSRFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERVKYEEYRES 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
                 + Q LL P I +    +   + E    L  +G+    +G N   +RE P  +++
Sbjct: 481 IGDVDQSQQQLLVPYIFEFPADDALRLKERMALLEEVGVFLAEYGENQFILREHPIWMAE 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
           + I   + ++ D ++ +    +++     +   M+C  SI++  ++      +LL ++ +
Sbjct: 541 EEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQ 599

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             N   C HGRP  +    SD+EK+F R
Sbjct: 600 CDNPYNCPHGRPVLVHFTKSDMEKMFRR 627


>gi|322388580|ref|ZP_08062180.1| exopolyphosphatase [Streptococcus infantis ATCC 700779]
 gi|321140500|gb|EFX36005.1| exopolyphosphatase [Streptococcus infantis ATCC 700779]
          Length = 649

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 311/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIVEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVKLALRRHATSKIKSQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  + P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGQVEEIIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       VE+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMVEIENADLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIQIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I K++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKERELMALVSEAIAKSLKEQTLIPDALENLAKSTVRNREKVEQTTLPLREN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E + +  D 
Sbjct: 361 TLYYEKNEPNRPTQAEVADHQVNLTEERQDLNLFAKETLDQMTKPAKLHFAERKTANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|270291963|ref|ZP_06198178.1| DNA mismatch repair protein HexB [Streptococcus sp. M143]
 gi|270279491|gb|EFA25333.1| DNA mismatch repair protein HexB [Streptococcus sp. M143]
          Length = 649

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 179/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAISNSLREQALIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E + +  D 
Sbjct: 361 TLYYEKTELSKPSQAEVADHQVELTDEGQDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|313896663|ref|ZP_07830211.1| DNA mismatch repair family protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974580|gb|EFR40047.1| DNA mismatch repair family protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 621

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 186/620 (30%), Positives = 301/620 (48%), Gaps = 33/620 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE++ERP+  +KEL+EN++DA ++ +E  I GGG SF ++TDNG 
Sbjct: 3   RIHVLDDTTINKIAAGEVVERPASVVKELVENAIDAGATAIEIEIMGGGTSFIRVTDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +   A+ RH TSKIS   D   + T GFRGEALP+I +VS  +L++R    + G 
Sbjct: 63  GMERPDAETAILRHATSKISTVADLQTVGTLGFRGEALPTIASVSRFSLITRTADADLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K + +     + GT V V DLFF  PAR  FLK ++ E   I+D +  +A++ 
Sbjct: 123 RVEILGGKTTEIEDAGCDVGTTVRVEDLFFNTPARKKFLKMDRTEAGKISDYVIMLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQGYT 237
           P ++F F             + + +    I  + G D     +     +++ +I + GY 
Sbjct: 183 PDIAFRFVNNNRLTLM---TAGDDSLRRAIESIYGGDAAGALIPLDFTDEAGDIRITGYI 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+  R +       +NGRT+Q++ I   I   Y   +P   +P+ VL +E+  R +DV
Sbjct: 240 SKPSMIRSSRAWQTYIVNGRTIQNRAIAKAIDNVYRALVPKMGFPLAVLRIEVPQRTIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--------N 349
           NVHP K+ ++F +   I   + +++Q A+      T+S+ +      FH +         
Sbjct: 300 NVHPQKTEMKFEDEGRIFKAVYKTVQGAVRGAAGETASIAAAVEKPKFHYESMPLRMPVT 359

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-----PVEESEATHY 404
            P   +P          + +     R ++ DL    D      ++       EES   + 
Sbjct: 360 PPPASVPHTYAPTAMPAQTVHEAAQRAASADLRSVQDIVGRARSEERAALMAEESPGAYR 419

Query: 405 QL----------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                        I   Q+   YI++Q+T  L I+DQHAAHER++F++      +  I S
Sbjct: 420 AEPAPAGTIESGLIPIGQVDLTYIVAQSTRALYIIDQHAAHERILFDRF--CALAEGIPS 477

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q +L   I+     E   I E+ E   RLG + E  G     + E PA +       ++R
Sbjct: 478 QQMLVHAILSFDAREMQYIEENAELFSRLGFRMEPAGDREYRLTESPADVPTDEAEDVIR 537

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +I+  + +       + R    LATMAC  +I++G ++   +M  LL E+   P    C 
Sbjct: 538 EILVSLGELHAATPAELRQAG-LATMACRAAIKAGEELSFRQMEILLEELRTTPFPFTCP 596

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT +    +D+ K+F R
Sbjct: 597 HGRPTILTFDTTDLAKMFKR 616


>gi|194398020|ref|YP_002036880.1| DNA mismatch repair protein [Streptococcus pneumoniae G54]
 gi|238690840|sp|B5E6C5|MUTL_STRP4 RecName: Full=DNA mismatch repair protein mutL
 gi|194357687|gb|ACF56135.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae G54]
          Length = 649

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TFYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|169350634|ref|ZP_02867572.1| hypothetical protein CLOSPI_01406 [Clostridium spiroforme DSM 1552]
 gi|169292688|gb|EDS74821.1| hypothetical protein CLOSPI_01406 [Clostridium spiroforme DSM 1552]
          Length = 607

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/607 (29%), Positives = 303/607 (49%), Gaps = 20/607 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L +   N+IAAGE+IERP+  +KEL+ENS+DA S++++ +I  GG +  Q+ DNG 
Sbjct: 6   KIKQLDDIFANKIAAGEVIERPANVVKELVENSIDANSNKIDVIIEEGGLNLIQVIDNGE 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +   RH TSKI D  D   I T GFRGEA+PSI ++S+  L +       G 
Sbjct: 66  GMVKEDALLCFSRHATSKIKDDQDLFCIQTLGFRGEAIPSIASISNFELKTST--GEKGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     K  S        GT ++V+ LF  +PARL +++S   E   I   + R+++++
Sbjct: 124 TVIYQYGKFISCDESDSKKGTDIKVKKLFQNVPARLKYIRSINAEFANIQTYLERLSLSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SFT        YK N    NGN  E IS + G +   N + +N + +E  + G+   
Sbjct: 184 PDISFTLINNGKIVYKTN---GNGNLLEVISNIYGLNVAKNMIPVNFEDDEFIISGFISK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              NR + N     +N R V++K    +I  AY   +   R+P+ ++ +EIDP  VDVNV
Sbjct: 241 IDINRASKNHIVTMVNSRVVKNKITTDSINNAYRRYLIDKRFPIAIVNIEIDPFLVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS----------KKMISSFHQDN 349
           HP+K  +RF     +++ + Q I  A++K  ++ S  ++          ++M   F  D 
Sbjct: 301 HPSKLEVRFSKEYKLKDLVYQGISDALSKVNLTYSPSVTNSRPKFVPDLQQMDFEFKYDE 360

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--SEDNDPVEESEATHYQLG 407
                  +    L     +  + EN+++T +    +            +E       +  
Sbjct: 361 QSNDEKIENENILDKRIYQETILENQINTINESKKEYIVPDKQTIESKLEPKPKIMKKKL 420

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
           +   QIH +YII +   G+ IVDQHA  ER+ +E   + + +  ++ + LL P  ++   
Sbjct: 421 LVKGQIHGSYIICEDETGMYIVDQHAGQERINYEYYLEKYANLDLSMRDLLVPITLEYPM 480

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E  +I E  + L +LGI  E FG N   I+++P  +   +    + D++ +++  +   
Sbjct: 481 SEFLIIEERKQILAKLGINLEIFGDNGYVIKQLPMWMQNIDEHVFIEDMVTQLLHDNKVD 540

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            ++   E+ +AT++C  S+++   +    M  L+  +    N   C HGRPT I     +
Sbjct: 541 VIK-LQEHAIATLSCKASLKANTHLSQEGMQNLIDNLMCCDNPYVCPHGRPTIIYYSTYE 599

Query: 588 IEKLFGR 594
           IEKLF R
Sbjct: 600 IEKLFKR 606


>gi|328953244|ref|YP_004370578.1| DNA mismatch repair protein mutL [Desulfobacca acetoxidans DSM
           11109]
 gi|328453568|gb|AEB09397.1| DNA mismatch repair protein mutL [Desulfobacca acetoxidans DSM
           11109]
          Length = 586

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 187/595 (31%), Positives = 306/595 (51%), Gaps = 15/595 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+ ++ ++IAAGE+I RP+  +KEL+EN+LDA +  +   I  GG    ++TDNG 
Sbjct: 3   RIGILAPEVASKIAAGEVITRPASVVKELVENALDAGARSITVEIEEGGCRQIRVTDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +E P+++QRH TSKI    D  ++ T GFRGEALPSI A+S L + SR  + + G 
Sbjct: 63  GMWPQEAPLSLQRHATSKIRQDTDLLHLKTMGFRGEALPSIAAISRLEMCSRSRELDLGC 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I    P A   GT V V DLF+  PAR  FL+S+  E   I ++IR +A+ Y
Sbjct: 123 RLTVEGGSIREQVPWAGPAGTHVTVTDLFYNTPARRKFLRSKAAEQGRIVELIRHLALGY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++             +     + +  ER++ ++G ++    + LN     + + G    
Sbjct: 183 PEIHLHLLAQGK---TLLHTPAHTDVRERLAALLGLEWAEKMLTLNLSGQGMRITGLVSG 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +       ++ IN R V D+ ++  +R AY   +P GR+PVVVL LE  P QVD+NV
Sbjct: 240 PDQHVATGRYQFLLINRRIVADRLLMGALRQAYQGLLPRGRHPVVVLNLEAAPDQVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RF+    +    + ++Q+A+       +    ++  +S  +  AP        
Sbjct: 300 HPTKAEVRFKEGGRVYALTLSAMQQALQ-----PTQTAGRQEFASSWRPQAPNRTEEARP 354

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L      L       +     P + P      +    S    +       Q+ + YI+
Sbjct: 355 AELFPHLPPL----PTAAVTAPQPLEPPPMPGLPEAGAPSANWRFAELKIIGQLQETYIL 410

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  DGL+IVDQHAAHER++FE + Q +       QTLL P  ++L     A  ++H   
Sbjct: 411 AQAPDGLLIVDQHAAHERILFENLSQSW-GKSGARQTLLFPVTLELDAASAAWSIDHLPV 469

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G++ E FG N   +R +P  LS +++  L  ++I E+    ++   +     +L T
Sbjct: 470 LQAAGMELEPFGGNTFLLRTVPTCLSGQDLESLAPEMIAELSPIKSSGDGETLRRQLLLT 529

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M+C G+I++G+ +   EM+ LL ++++   SS C HGRP +  L + +I + F R
Sbjct: 530 MSCRGAIKAGQSLSPEEMHHLLAQLDQLTVSSHCPHGRPLWRLLTMPEIRQNFRR 584


>gi|322412856|gb|EFY03764.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 661

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 177/648 (27%), Positives = 315/648 (48%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    +ITDNG 
Sbjct: 4   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITIDIEESGLKMIEITDNGE 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+SE++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   ++N G+
Sbjct: 64  GMSSEDLPLSLRRHATSKIKTQSDLFRIRTLGFRGEALPSVASISKITIKTATKEDNHGS 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I ++   +   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 124 LLVAIGGEIETLVETSTPVGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY  +
Sbjct: 184 PEIAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTAKKMIPISSADLDFEVSGYVSL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DVNV
Sbjct: 241 PELTRANRNYMTILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP  +
Sbjct: 301 HPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPLQS 360

Query: 360 TSL--TNTQEKLFLQENRLST--------------------------------------- 378
             L     +   F++E+ +S                                        
Sbjct: 361 KGLYYDPQKNDFFVKESDVSEKLPESNFHDTEIDKTVKDQRTEQFPDLGENIGFSSVKRA 420

Query: 379 ------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                             +    S+    +E  E + +       Q+H  Y+ +Q  DGL
Sbjct: 421 SRSQDEVTDADHPGFDLKNKQKLSQMLTRLENEERSVFPELDYFGQMHGTYLFAQGKDGL 480

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 481 FIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVGIF 540

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 541 LEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKRSI 599

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 600 KANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 647


>gi|289168758|ref|YP_003447027.1| DNA mismatch repair protein hexB [Streptococcus mitis B6]
 gi|288908325|emb|CBJ23167.1| DNA mismatch repair protein hexB [Streptococcus mitis B6]
          Length = 649

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 311/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEITGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 361 SLTNTQ---------------------------------------EKLFLQENRLSTNDL 381
           +L   Q                                        KL   E + +  D 
Sbjct: 361 TLYYEQTEANRSSQAEVADYQVELTDEGQDLTLFAKETLDQLTKPAKLRFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   I E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRIKERMALLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|323128224|gb|ADX25521.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 660

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/648 (27%), Positives = 314/648 (48%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS+V   I   G    QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQVTIDIEESGLKKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   ++N G+
Sbjct: 63  GMSPEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEDNHGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I ++   +   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++A+
Sbjct: 123 LLVAIGGEIETLEETSTPVGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF   +      ++   S  G+  + I+ + G +     + ++    +  + GY  +
Sbjct: 183 PEVSFILISDGR---QLTQTSGTGDLRQAIAGIYGLNTAKKMIAISNADLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYMTILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP  +
Sbjct: 300 HPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPLQS 359

Query: 360 TSL--TNTQEKLFLQENRLST--------------------------------------- 378
             L     +   F++E+ +S                                        
Sbjct: 360 KGLYYDPQRNDFFVKESDVSEKIPESNFHNTEIDKTVKDQRTEQFPDLGENTGFSSVKRA 419

Query: 379 ------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                         L   +    S+    +E  E + +       Q+H  Y+ +Q  DGL
Sbjct: 420 SRSQDEITDADHPGLDLKNKQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKDGL 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 480 FIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVGIF 539

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 540 LEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKRSI 598

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 599 KANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|322392517|ref|ZP_08065977.1| DNA mismatch repair protein HexB [Streptococcus peroris ATCC
           700780]
 gi|321144509|gb|EFX39910.1| DNA mismatch repair protein HexB [Streptococcus peroris ATCC
           700780]
          Length = 649

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 178/636 (27%), Positives = 310/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA S+++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSNQIIVEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  + P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGQVEEIIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+         +    +  G   + I+ + G       VE+     +  + G+  +P
Sbjct: 184 EISFSLICDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMVEIENADLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I K++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKERELMALVSEAIAKSLKEQTLIPDALENLAKSTVRNREKVEQTTLPLREN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +                                             KL   E + ++ D 
Sbjct: 361 TFYYEKNEPTRPTQAEVADHQVNLTEEKQDLNLFAKEALDQMTKPAKLHFAERKPASYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMSLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|154686122|ref|YP_001421283.1| DNA mismatch repair protein [Bacillus amyloliquefaciens FZB42]
 gi|166231103|sp|A7Z4X6|MUTL_BACA2 RecName: Full=DNA mismatch repair protein mutL
 gi|154351973|gb|ABS74052.1| MutL [Bacillus amyloliquefaciens FZB42]
          Length = 624

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/625 (29%), Positives = 308/625 (49%), Gaps = 37/625 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +LS+++ N+IAAGE++ERP+  +KEL+EN++DA S+ +E  I   G S  ++ DNG 
Sbjct: 3   KVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +++   A +RH TSKI D  D   + T GFRGEALPSI +VSHL + +       G 
Sbjct: 63  GMETDDCKRAFRRHATSKIKDENDLFRVRTLGFRGEALPSIASVSHLEIKT-SIGEGAGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  I S +  +   GT + V +LFF  PARL ++K+   E   ITDV+ R+A+A+
Sbjct: 122 HLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYMKTVHTELGNITDVVNRIALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VS            +   + NG+    ++ + G       + L+  S +  ++GY  +
Sbjct: 182 PEVSIRLRHQGK---NLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHISSLDFEVKGYIAL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  ++  +   Y   +P+GR+P+  + + +DP  VDVNV
Sbjct: 239 PEITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---------QDNA 350
           HP+K  +R    T +   I   I++   K+ +  S+ L KK   +           +++A
Sbjct: 299 HPSKLEVRLSKETELHELIRDGIKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESA 358

Query: 351 PKTHLPKYATSLTNTQEKLF----------------LQENRLSTNDLLPSDDPTY----- 389
           P+  LP+     + +  KL                   E        L   +        
Sbjct: 359 PERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADHGVPPELGMPETAAPVSDT 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
            E     EE       +     Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+    
Sbjct: 419 PEPEAVSEEIREERVPMMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQ 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
            +   Q ++ P        E  +I +H  +L  +G+  E FG N+  +R  PA   K   
Sbjct: 479 VEPEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEE 538

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ +II +++D+     ++   E     M+C GSI++ R +++ E+  LL ++ +  +
Sbjct: 539 AELIEEIIQQVLDAKQID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTD 597

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRP  I     ++EK+F R
Sbjct: 598 PFTCPHGRPIIIHHSTYEMEKMFKR 622


>gi|307705926|ref|ZP_07642763.1| DNA mismatch repair protein mutL [Streptococcus mitis SK597]
 gi|307620522|gb|EFN99621.1| DNA mismatch repair protein mutL [Streptococcus mitis SK597]
          Length = 649

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 311/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K  ++  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTESTRPSQAEVADYQVELTEEGQDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+       + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGDVDQSQQQLLVPYIFEFPADDALRLKERMALLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|323489620|ref|ZP_08094847.1| DNA mismatch repair protein [Planococcus donghaensis MPA1U2]
 gi|323396751|gb|EGA89570.1| DNA mismatch repair protein [Planococcus donghaensis MPA1U2]
          Length = 606

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 180/606 (29%), Positives = 300/606 (49%), Gaps = 20/606 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR + E + N+IAAGE++ERP+  +KEL+EN++DA S+ +E ++   G +  QI DNG G
Sbjct: 4   IRLMDEPLSNKIAAGEVVERPTSVVKELVENAIDAGSTAIEVLLIEAGLTSIQIIDNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M +++  ++  RH TSKI++  D   I T GFRGEAL SI +VS +TL +      +G  
Sbjct: 64  MDADDALLSFSRHATSKIANEHDLFRIRTLGFRGEALASIASVSKVTLHT--SNGESGTF 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G +++  R  ++  GT +++  LFF  PARL ++K+ Q E     D++ R A++YP
Sbjct: 122 VQMEGGRLTEHRAGSLRKGTDIKIDQLFFNTPARLKYMKTLQTELGHSIDLLNRFALSYP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F          +    S +G     ++ + G       V    +S++  + GY  +P
Sbjct: 182 GIAFKLVHDGRIILQ---TSGSGEIKRVLADIYGVAIAKKMVPFEGQSHDYKISGYASLP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +F+NGR V+   I +T+  AY   +PL R P+VV+ +E DP   DVNVH
Sbjct: 239 EITRANKNYISLFVNGRWVKHYAIANTVHKAYHTFLPLERQPIVVMNIEGDPYLTDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-----------MISSFHQDN 349
           PAK  IR      +   I +++++ I+    +      K              SSF    
Sbjct: 299 PAKQQIRLSKEKELMELIHETLRRTISTVVRAPVIDKPKPVKQAPTRQLDLWKSSFTVQE 358

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
           A +  + +Y+      ++ +  Q+      D    +     ++ +  ++ +   +     
Sbjct: 359 AKEEPVQRYSEVPVEQEKVVVPQDKERVQQDFPTIEQTPAVQEYEEEQQEQGPQFPELEV 418

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEG 468
             QIH  YI++Q+ DG  ++DQHAA ER+ +E  R+          Q LL P        
Sbjct: 419 VGQIHGTYIVAQSNDGFYLIDQHAAQERIKYEYFREKVGDIDSNERQALLLPLTFHYSRD 478

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E   + +H   L   G+  E FG  +  +RE P    K    +++ D+I++I+       
Sbjct: 479 EALRLKDHLPVLTDSGVFLEEFGDTSFIVREYPTWFPKGFEQEVIEDLIEQILTERKVD- 537

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           ++   E+    M+C  SI++   +Q  EM RLL +++K      C HGRP  I  K  D+
Sbjct: 538 VKKLREDAAIMMSCKRSIKANHFLQKHEMERLLMDLKKAEQPFTCPHGRPVIIHFKTYDV 597

Query: 589 EKLFGR 594
           EK+F R
Sbjct: 598 EKMFKR 603


>gi|331267171|ref|YP_004326801.1| DNA mismatch repair protein MutL [Streptococcus oralis Uo5]
 gi|326683843|emb|CBZ01461.1| DNA mismatch repair protein MutL [Streptococcus oralis Uo5]
          Length = 649

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 179/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGQVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEITGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKERELMALLSEAISNSLKEQALIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E + +  D 
Sbjct: 361 TLYYEKTELSKPSQAEVADHQVELTEEGRDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|169827226|ref|YP_001697384.1| DNA mismatch repair protein [Lysinibacillus sphaericus C3-41]
 gi|168991714|gb|ACA39254.1| DNA mismatch repair protein [Lysinibacillus sphaericus C3-41]
          Length = 614

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 176/617 (28%), Positives = 291/617 (47%), Gaps = 35/617 (5%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
            E + N+IAAGE++ERP+  +KEL+EN++DA S+ ++  +   G +  Q+ DNG GM  E
Sbjct: 2   DEWLSNKIAAGEVVERPASVVKELVENAIDAGSTSIDVFLLEAGLTSIQVIDNGSGMDEE 61

Query: 67  EIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
           +  M+  RH TSKI    D   I T GFRGEAL SI +VS +TL++      +G  + + 
Sbjct: 62  DAIMSFSRHATSKIHQEHDLFRIRTLGFRGEALASIASVSKMTLIT--SNGESGTHLELE 119

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           G  + + +P  +  GT + V  LFF  PARL ++K+ Q E     D++ R+A++ P+++F
Sbjct: 120 GGHMLTHKPGPLRKGTDLTVSQLFFNTPARLKYMKTIQTELGHTIDLMNRLALSNPQIAF 179

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                      +   +  G+  + ++ + G       V    +S++  + GY  +P   R
Sbjct: 180 RLLHNGQI---LLQTNGRGDVQQVLAAIYGVHNAKKMVSFQGESHDYRISGYVTLPEVTR 236

Query: 245 GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKS 304
            + N   +F+NGR V+   +   I  AY   +P+ R+P+VVL +E DP   DVNVHPAK 
Sbjct: 237 ASKNYMSLFVNGRWVKHYLVQKAIVDAYHTYLPIERFPIVVLYIEGDPYLTDVNVHPAKH 296

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY------ 358
            IR      +   I ++I++ I            +K++    +        PK       
Sbjct: 297 QIRLSKEPELLKLIEETIRERIRSVIRVPQMEKKEKIVKPATEQLNIWKPAPKIDVEKMN 356

Query: 359 ---------ATSLTNTQEKLFLQEN-----------RLSTNDLLPSDDPTYSEDNDPVEE 398
                     T   N +E     E              S       +     +  D V+E
Sbjct: 357 AIVEKLYDVQTIRENQRETPVEPEPVSTIVKDYGQTTPSLEAEEIEEITITEQHEDLVDE 416

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTL 457
           +    +       QIH  YI++Q  DG  ++DQHAA ER+ +E  R+          Q L
Sbjct: 417 TGKEPFPELEVVGQIHGTYIVAQMEDGFYLIDQHAAQERIKYEFFREKVGQVNPHERQAL 476

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P        E  L+ EH ++L  +G+  E FG ++  +RE P+   +    +++ D+I
Sbjct: 477 LLPLTFHYAADEALLLREHKQELEAVGVFLEEFGQSSFVVREHPSWFPQGEEQEIIEDLI 536

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           ++++ +     ++   E     M+C  SI++   +   +M  LLR++ K  N   C HGR
Sbjct: 537 EQVLTTKKAD-IKKLREAAAIMMSCKKSIKANYYLTKEQMEILLRDLRKADNPFTCPHGR 595

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I     ++EK+F R
Sbjct: 596 PVLIHFTSYEVEKMFKR 612


>gi|118443055|ref|YP_878179.1| DNA mismatch repair protein [Clostridium novyi NT]
 gi|166232086|sp|A0Q0M7|MUTL_CLONN RecName: Full=DNA mismatch repair protein mutL
 gi|118133511|gb|ABK60555.1| DNA mismatch repair protein hexb [Clostridium novyi NT]
          Length = 645

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 199/645 (30%), Positives = 332/645 (51%), Gaps = 56/645 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LSE+  N+IAAGE++ERP+  +KEL+ENS+DA +  +   I   GK   +I+D+G 
Sbjct: 3   RINVLSEETSNKIAAGEVVERPASVVKELVENSIDANAKNITIEIKESGKDSIKISDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKIS  +D  +I+TFGFRGEALPSI AVS++ L S+   ++ G 
Sbjct: 63  GIHPNDIEKAFMPHGTSKISLIEDLYSINTFGFRGEALPSIAAVSNVLLKSKTMDSDFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +SG +I+ ++  A N GT++ V +LFF +PAR  FLKS++ E++LI+++I R+A+A 
Sbjct: 123 EILVSGGRINHIKDTACNIGTVISVENLFFNVPAREKFLKSDRRESSLISNIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +SF + T           S   +    I  + G++   N +   E S+ +++ GY G 
Sbjct: 183 HNISFKYYTNNKKTLMTYASS---DVKNTIRSIYGKNIYENIISFEEHSDIVSVYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R ++   I + +  A+     + ++P  VL ++I P  +DVNV
Sbjct: 240 SEISRGSRNNQSIFVNKRYIKSGTITAAVENAFKSFSTVNKFPFFVLFVDIYPEFIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------SSVLSKKMISSFHQDNAPKT 353
           HP KS ++F++  II   +  ++  A++     +      S    K    +  QD  PK 
Sbjct: 300 HPTKSEVKFQDERIIYKVVFDAVHSALSTSIKESFNINKDSIFDDKDTTYNLIQDETPKQ 359

Query: 354 -------------------HLPKYATSLTNTQEKLFLQEN--------------RLSTND 380
                              +LPK+  +++  + K   +EN               L T D
Sbjct: 360 EQVQIPIDLQNKRSDSIIENLPKFNPNVSYEKPKDSCRENCLNSIDINLKNTTEELKTKD 419

Query: 381 LLPSDDPTYSEDNDPVEESEATH-----------YQLGIACAQIHQNYIISQTTDGLVIV 429
           +   +  + S  ++ + E   +            +       Q ++ YI++++ D   ++
Sbjct: 420 IYYENSISASPKDNILCEKSQSKNIDNYNTIEAKFPRLNILGQFNKTYILAESLDTFYMI 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAAHE+++FEK +    +  + SQ LLTP II++   + A   E+    H  G   E 
Sbjct: 480 DQHAAHEKILFEKFKNQIENRDVISQILLTPVIIEMSAEDFAYYSENINIFHESGFVTEV 539

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG N I+IRE P +L K +      +I D+I +      +     N+++++AC  +I++ 
Sbjct: 540 FGDNIISIREAPMLLGKVSTKDFFLEIFDDIKNMGNG-NIAKIKHNMISSLACKAAIKAN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   EMN L+ ++        C HGRPT IKL L +IEK F R
Sbjct: 599 HTLSYEEMNSLIEDLRYIEEPFNCPHGRPTIIKLTLKEIEKKFKR 643


>gi|302874907|ref|YP_003843540.1| DNA mismatch repair protein MutL [Clostridium cellulovorans 743B]
 gi|307690473|ref|ZP_07632919.1| DNA mismatch repair protein MutL [Clostridium cellulovorans 743B]
 gi|302577764|gb|ADL51776.1| DNA mismatch repair protein MutL [Clostridium cellulovorans 743B]
          Length = 658

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/658 (27%), Positives = 327/658 (49%), Gaps = 69/658 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L     N+IAAGE++ERP   +KE++ENS+D+ ++++   I  GG++  +ITD+G 
Sbjct: 3   RINLLDNNTSNKIAAGEVVERPLSVVKEMMENSIDSGATKITIEILDGGETLIRITDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI   DD   + + GFRGEAL SI +V+ + L ++    + G 
Sbjct: 63  GIHPEDVEKAFLPHATSKIETIDDLYKLKSLGFRGEALASIASVAKVNLKTKIGSEDFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G +I  +     N GT++EVRD+F+ +PAR  FLKS+Q E  LI+D++ R+A+AY
Sbjct: 123 EIEIHGGEIKYLNSCGCNKGTVIEVRDIFYNVPARKKFLKSKQREAALISDIVSRIALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF F +       +      G   + I  + G++ + N        + +++ GY G 
Sbjct: 183 PNISFKFFSNNK---NVLTTFGTGQLTDTIRNIYGKNVVENLSFFEGHGDIVSIYGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +RG+ N   +F+N R +++K I + +  A      + +YP  ++ L+I P  +DVNV
Sbjct: 240 SELSRGSRNNQSIFVNNRFIKNKLIATAVENAVKSFFMVNKYPFFIIFLDIYPEFLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------------------KGISTS 334
           HP K+ I+F++ + I   +  +I K +                             +   
Sbjct: 300 HPTKAEIKFQDESRIFKIVFDTIHKVVRDLVKDDFLETDKEEINEKPIMQVKLPVDLKAP 359

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE--------------------------- 367
            + ++ +++S +++     +L         +QE                           
Sbjct: 360 EIPTEVLVNSNNKNPKENNYLDYQILQNDKSQETQKQDNIRIDSAQEKDTLWNTTISQDV 419

Query: 368 --KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
             ++ ++EN ++T+    S + + ++ +   EE             +     II Q ++ 
Sbjct: 420 NSEIAVKENEINTSYNKSSVEESVAKVSIEKEEVNDFTNSEIKPVEKFPMMRIIGQYSNT 479

Query: 426 LVIV---------DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
            +++         DQHAAHE++IFEK  ++   +K+ SQ L+ PE+I++   + ++  E+
Sbjct: 480 YILMEGYDGLYLVDQHAAHEKIIFEKYIKEMKLSKVVSQILMLPEVIEMTPYDFSIYKEN 539

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E   + G   E FG N +++RE+P  L +  + +L  +I+D + +  +  TL+ +   I
Sbjct: 540 HEMFTKAGFLIEDFGENTVSVREVPVFLGRPVVKELFTNILDNLKNYGSGSTLEVKYYKI 599

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AT+AC  +I++   +   EM  L+ E+        C HGRPT IK+  ++IEK F R
Sbjct: 600 -ATLACKSAIKANDNLDIREMIALIEELRFIDEPFNCPHGRPTIIKMTNNEIEKRFKR 656


>gi|149175950|ref|ZP_01854567.1| DNA mismatch repair protein [Planctomyces maris DSM 8797]
 gi|148845104|gb|EDL59450.1| DNA mismatch repair protein [Planctomyces maris DSM 8797]
          Length = 648

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 177/639 (27%), Positives = 311/639 (48%), Gaps = 50/639 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L   +IN+IAAGE+IERP+ A+KEL++NS+DA ++R+E  I  GG    ++ DNG 
Sbjct: 12  RIHQLDTSVINKIAAGEVIERPASAVKELLDNSIDALATRIEVDIMNGGADLIRVVDNGE 71

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV  + TSKIS  DD  ++ T GFRGEAL SI  VSH  + +R    + G 
Sbjct: 72  GIHPDDLLLAVASNATSKISTADDLFSVQTMGFRGEALASISEVSHFRIRTRTADQSQGL 131

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  +        +P     GT +EVR LF   P R  FLK+ + E   I++   R A+A+
Sbjct: 132 EFEVKTGIPGKPQPCGCPLGTAIEVRQLFANTPVRRKFLKTTKTEFGHISEQFTRAALAH 191

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++           + +     + N  +R+    G       + ++ + ++I + GY   
Sbjct: 192 PRLYMVLRHNNKVIFDL---PPSDNLLDRLRLFYGSKLAEQLIWVDSEVDDIRIWGYVSH 248

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ N+      Y+F+NGR +QD+ +   +  AY   + +GR P+  L L++   QVDVNV
Sbjct: 249 PSENKSTRKGQYLFLNGRWIQDRTLQHALTEAYRGLLMVGRQPISFLYLDMPASQVDVNV 308

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP-------- 351
           HP KS +RFR+   +   ++ +++       + +   L KK          P        
Sbjct: 309 HPTKSEVRFRDGQHLYRQLLSTLRSQFLSMDLQSQMSLGKKADFDVTAPPPPLTPEQKQT 368

Query: 352 ----------------------KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                                 K      + S T+     F   + +  +    + + + 
Sbjct: 369 QMELTSWAKEQLNQVHDNLSDIKISSAPRSVSPTSDLAAPFTAADAIPLSHFQQNREQSP 428

Query: 390 SEDNDPVEESE--------------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
            E  +   E                A      +   Q+   YI+ +    L I+DQHA H
Sbjct: 429 VELPETENEPADLVVPDIDRPADKFADVATSDLRPIQVLNCYIVVENKGALTIIDQHALH 488

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+++E  R+   +  + +Q LL P  +++   E AL+++H E L+  G+  E FG N +
Sbjct: 489 ERIMYEYFRKRVLAQSVEAQKLLVPLTLEMSGKEAALLLDHAEMLNSFGLGIEEFGGNTL 548

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            I   P +L K N+ QL+RDI D + D++   + +D +++++  M+C  +I++G+++   
Sbjct: 549 LITSYPVMLKKVNLEQLVRDIADNL-DNAKQPSRRDLLDDLITMMSCKAAIKAGQRLTQE 607

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E+  LL +     ++  C HGRP+ + L  +++++ FGR
Sbjct: 608 EIYSLLEQRHLIDDAHHCPHGRPSALVLSHAELDRQFGR 646


>gi|133950292|gb|ABO44018.1| MutL [Streptococcus pneumoniae]
          Length = 649

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|222153878|ref|YP_002563055.1| DNA mismatch repair protein [Streptococcus uberis 0140J]
 gi|254766178|sp|B9DW70|MUTL_STRU0 RecName: Full=DNA mismatch repair protein mutL
 gi|222114691|emb|CAR43777.1| DNA mismatch repair protein MutL [Streptococcus uberis 0140J]
          Length = 660

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 174/648 (26%), Positives = 302/648 (46%), Gaps = 59/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE+IERP+  +KEL+EN++DA S ++   I   G    +ITDNG 
Sbjct: 3   KIIELPEILANQIAAGEVIERPASVVKELVENAIDANSRQITIEIEESGLKSIKITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E +P+++ RH TSKI    D   I T GFRGEALPSI ++S L + +    +  G+
Sbjct: 63  GMSEENLPLSILRHATSKIKNQSDLFRIRTLGFRGEALPSIASISELRIETSTADSPYGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G +I     ++   GT + V +LF+  PARL ++KS Q E   I DV+ R+++ +
Sbjct: 123 LLVAKGGQIERQEVISTPVGTKITVENLFYNTPARLKYMKSLQSELAHIVDVVNRLSLGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSFT         K    S  G+  + I+ + G +     +E++    +  + GY  +
Sbjct: 183 PEVSFTLICDGREMTK---TSGTGDLKQAIAGIYGLNTAKKMIEISNADLDFEVSGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +I +++  + +   ++ +    +        +T LP  +
Sbjct: 300 HPTKQEVRISKEKELMALISTAIAESLKSQDLIPDALENLAKSTVRSSTKYEQTKLPLQS 359

Query: 360 TSL--TNTQEKLFLQENRLST--------------------------------------- 378
           + L     +   +++E + +T                                       
Sbjct: 360 SKLYFDPQKNDFYIKEPQKTTELTVSEESPNFTLYTNIDNTVKEDRNLDQTSASASVKHA 419

Query: 379 ------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                        +L  ++     +    +E  + + +       Q+H  Y+ +Q  DGL
Sbjct: 420 SRSQDENQLSEHPNLDFTNKQKMEQLISKLENEKTSTFPELDFFGQMHGTYLFAQGKDGL 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +GI 
Sbjct: 480 FIIDQHAAQERVKYEYYRDKIGKVDTSLQQLLVPYLFEFSGADFIQLQEKMSFLNEVGIF 539

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E +G N   +RE P  + +  I   + ++ D ++ ++   +++     +   M+C  SI
Sbjct: 540 LEPYGMNTFILREHPIWMKESEIESGVYEMCDMLLLTNQV-SIKTYRAELAIMMSCKRSI 598

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +       LL ++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 599 KANHALDDYSARHLLEQLSQCQNPYNCPHGRPVLVHFTKADMEKMFRR 646


>gi|301793453|emb|CBW35826.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae INV104]
          Length = 649

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 313/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG+G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGYG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|307126400|ref|YP_003878431.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae 670-6B]
 gi|133950174|gb|ABO44014.1| MutL [Streptococcus pneumoniae]
 gi|183393274|gb|ACC61797.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|306483462|gb|ADM90331.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae 670-6B]
          Length = 649

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|168493871|ref|ZP_02718014.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC3059-06]
 gi|169833770|ref|YP_001693695.1| DNA mismatch repair protein [Streptococcus pneumoniae Hungary19A-6]
 gi|238688359|sp|B1I8F2|MUTL_STRPI RecName: Full=DNA mismatch repair protein mutL
 gi|168996272|gb|ACA36884.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183576093|gb|EDT96621.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC3059-06]
          Length = 649

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKKV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|322375073|ref|ZP_08049587.1| DNA mismatch repair protein HexB [Streptococcus sp. C300]
 gi|321280573|gb|EFX57612.1| DNA mismatch repair protein HexB [Streptococcus sp. C300]
          Length = 649

 Score =  494 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 308/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAMDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       + +     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIAIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKERELMALVSEAISNSLKEQSLIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E + +  D 
Sbjct: 361 TLYYEKTELSKPSQAEVADHQVELTEEGRDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  N   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLNKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMALLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|56419842|ref|YP_147160.1| DNA mismatch repair protein [Geobacillus kaustophilus HTA426]
 gi|81819748|sp|Q5L0E4|MUTL_GEOKA RecName: Full=DNA mismatch repair protein mutL
 gi|56379684|dbj|BAD75592.1| DNA mismatch repair protein [Geobacillus kaustophilus HTA426]
          Length = 630

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/631 (28%), Positives = 296/631 (46%), Gaps = 43/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL + + N+IAAGE++ERP+  +KEL+EN++DA S+ +   +   G +  ++ DNG 
Sbjct: 3   RIRKLDDLLANKIAAGEVVERPASVVKELVENAIDAHSTVINIELEEAGMAKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSKI D  D   I T GFRGEALPSI +VS + L      +  G 
Sbjct: 63  GMEEDDCLLAFERHATSKIHDEHDLFRIRTLGFRGEALPSIASVSEVELT-TGTGSGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  + S    A   GT + V +LFF  PARL ++K+   E     DV+ R+A+A+
Sbjct: 122 KLVLQGGALVSRERAAGRKGTDITVSNLFFNTPARLKYMKTIHTELGHAADVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF           +   + +G+    ++ + G +     + +  +S + T++GY   
Sbjct: 182 PDVSFRLRHQGK---TLLATNGSGDVRHVLAAIYGAETARQMIPIEAESLDFTIRGYISP 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V+   ++  I   Y   +P+GRYP+V L +E+DP  VDVNV
Sbjct: 239 PDVTRASRNYISLVVNGRYVRSVPLMKAIEAGYHTLLPIGRYPIVFLSIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-SSFHQDNAPKTHLPKY 358
           HPAK  +RF     +   +  +I++A  K+ +  S     KM      Q     TH  + 
Sbjct: 299 HPAKLEVRFSKEAELNELVTDAIRQAFRKRTLIPSVSADSKMAKPKAEQAAWTFTHRVRE 358

Query: 359 ATSLTN---------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            + L++               T +    + +     D     D          EE     
Sbjct: 359 PSVLSSDIGGGEDATAPLAPLTGDAPAERPSAAVQTDECGILDEHGPAFERKQEEEVGEE 418

Query: 404 YQ--------------------LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                                       Q+H  YI+++   GL ++DQHAA ER+ +E  
Sbjct: 419 RCSPRLPTDGQAEDKAAADRLPPLYPIGQLHGTYILAENEHGLYMIDQHAAQERINYEYF 478

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           R+         Q LL P + +    E   I    ++L R G+  E FGP A  +R  P  
Sbjct: 479 REKLGEATKEVQELLVPLMFEYPADEYERIAACRDELARCGVFLEPFGPRAFLVRSHPTW 538

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
             K    +++ ++I++++ + T   ++   E     M+C  +I++ + ++  E+  LL  
Sbjct: 539 FPKGREREIIEEMIEQVLAAKTVD-IKQLREQAAILMSCKRAIKANQHLRQDELFALLEA 597

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  +   C HGRP  +     +IEKLF R
Sbjct: 598 LRQTTDPFTCPHGRPIIVHFSTYEIEKLFKR 628


>gi|184154990|ref|YP_001843330.1| DNA mismatch repair protein [Lactobacillus fermentum IFO 3956]
 gi|227514528|ref|ZP_03944577.1| DNA mismatch repair protein MutL [Lactobacillus fermentum ATCC
           14931]
 gi|260663385|ref|ZP_05864276.1| DNA mismatch repair protein HexB [Lactobacillus fermentum 28-3-CHN]
 gi|238692956|sp|B2GB18|MUTL_LACF3 RecName: Full=DNA mismatch repair protein mutL
 gi|183226334|dbj|BAG26850.1| DNA mismatch repair protein HexB [Lactobacillus fermentum IFO 3956]
 gi|227087085|gb|EEI22397.1| DNA mismatch repair protein MutL [Lactobacillus fermentum ATCC
           14931]
 gi|260552237|gb|EEX25289.1| DNA mismatch repair protein HexB [Lactobacillus fermentum 28-3-CHN]
 gi|299782995|gb|ADJ40993.1| DNA mismatch repair protein mutL [Lactobacillus fermentum CECT
           5716]
          Length = 647

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 177/633 (27%), Positives = 298/633 (47%), Gaps = 45/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L   + +QIAAGE+IERP+  +KEL ENSLDA S R++ ++   G    ++ D+G 
Sbjct: 3   KIHELDSVLADQIAAGEVIERPASIVKELAENSLDANSHRIDIIVEEAGLKSVRVIDDGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A  RH TSKI+D  D   + T GFRGEALPSI +V+ + L +       G+
Sbjct: 63  GIEADDVARAFLRHATSKIADKGDLFKVTTMGFRGEALPSIASVADVLLTTATGGAA-GS 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI I G +I +    +  PGT + V DLF+  PARL +LKS   E   I D++ R+A+A 
Sbjct: 122 QIHIKGGEILAHGQASARPGTDILVSDLFYNTPARLKYLKSPHTELARIVDIVNRLALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+ +      ++    + NGN  + ++ + G       VE+  +     + G   +
Sbjct: 182 PTVAFSLTHDGKEVFR---SAGNGNLKQVVAAIYGVQAGRKMVEVKGEDPNFKVSGLVSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R       + IN R V++  +   +   Y   + +GRYP+ V+ +++DP  VDVNV
Sbjct: 239 PELTRAGRQYMTIMINHRYVRNFQLTKALVAGYRSKLMVGRYPLAVINIDLDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------SSVLSKKMISSFHQ 347
           HPAK  +R      + + + + + +AI+++ +                 +     ++   
Sbjct: 299 HPAKREVRLSMEPQLVDLLERVVSQAIDQQNLIPDVGDRADELLTREQTVHAPRSAAPRV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----------------DPTYSE 391
                   P +  S T+ +  +  + + L++  +   D                D   S+
Sbjct: 359 SERASDEPPAWQPSPTSGEPVIISRRSELASPAVQAFDRRYQNEEVATPFGAQADAKVSQ 418

Query: 392 DNDPVEESEATHYQLG----------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
               VE+        G              Q+H  Y+++Q +DGL IVDQHAA ER+ +E
Sbjct: 419 AQPAVEQVSLDIDDRGDVASERFPDLTYLGQLHGTYLLAQASDGLYIVDQHAAQERINYE 478

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
             R++        Q  LTP +++    +   I +H   L   G+K E FG N+  +   P
Sbjct: 479 YYREEIGKVSADQQNFLTPLVLNYSLADALKIQQHQAVLAACGLKLEPFGQNSFMLASHP 538

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
                       R++ID ++ S    +++D        M+C  +I++  ++   +   LL
Sbjct: 539 TWFVAGQEEDTAREMIDWVLASGK-LSVKDFRAKAAIMMSCKRAIKANHRLDERQAKALL 597

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             + +  N   C HGRP  I    +D+EKLF R
Sbjct: 598 ARLPQCENPFNCPHGRPVTIHFTTTDLEKLFKR 630


>gi|94970246|ref|YP_592294.1| DNA mismatch repair protein MutL [Candidatus Koribacter versatilis
           Ellin345]
 gi|123256270|sp|Q1ILN0|MUTL_ACIBL RecName: Full=DNA mismatch repair protein mutL
 gi|94552296|gb|ABF42220.1| DNA mismatch repair protein MutL [Candidatus Koribacter versatilis
           Ellin345]
          Length = 647

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 190/649 (29%), Positives = 317/649 (48%), Gaps = 61/649 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LSE + N+IAAGE++ERP+  +KELIENSLDA + R+   +  GGK    I D+G 
Sbjct: 3   RIHVLSEHVANKIAAGEVVERPASVVKELIENSLDAGAKRIRVHVEAGGKKLIHIVDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSK+   +D  +I T GFRGEALPSI +V+ + L +R  +  +G 
Sbjct: 63  GMFRDDAMLAFERHATSKLKNPEDLLSISTLGFRGEALPSIASVARVRLETRANEEPSGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I+G KI  +    +  GT + ++DLFF  PAR  FLKSE  E + I  ++   A+A+
Sbjct: 123 VLEIAGGKILKIEEAGLPLGTSIAIKDLFFNTPARKKFLKSESTELSHIASLVTHYALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV----------------- 222
           P++ +   +  +    +          ERI QV G + ++  +                 
Sbjct: 183 PEMHWELHSATNA---LLIAPPVATQSERIYQVFGNETLDQLIPLAAQIKLERIGLPKPP 239

Query: 223 -----------ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
                      E   +  E+ L G+   P   + N N  +VF+NGR ++D+ +   +  A
Sbjct: 240 PWLRKNEDDEEEQTVEPGEVRLHGFISKPEIQKLNRNSIFVFVNGRLIRDRLVQHALTEA 299

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y   +P   +PVV+L LE+   +VDVNVHP+K+ +RFR  +++ +F+  S++ A++K   
Sbjct: 300 YRNILPPTLFPVVLLFLEMPYTEVDVNVHPSKTEVRFRQQSLVHDFVRDSVRAALSKARP 359

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP---- 387
               +              P              QE+  L E      D +  +      
Sbjct: 360 IPQFISEIHAQPKASPSLTPGAQTA--PAFALEAQEEPVLPERLQFGGDAISVEANAAVP 417

Query: 388 ----------TYSEDNDPVEESEATHYQ------------LGIACAQIHQNYIISQTTDG 425
                     ++      V E+    Y+                  QI +++I++ + +G
Sbjct: 418 VARFGAQTFGSHVAQQQTVPETSGCDYELPDLPAADAPLASLRPLGQIRESFILATSNEG 477

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I+DQH AHER++FEK+ +   +  + +Q LL P I++L  G+ A+  E  E+LH+ G 
Sbjct: 478 LWIIDQHVAHERVLFEKVLKQRAAASVETQQLLMPLIVELTPGQQAVFTEIAEELHQNGF 537

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
           + E FG    A++  PA +  ++I + L +++D        + L+     I AT+AC+ +
Sbjct: 538 EVEPFGSRTFAVKAAPAGIRAEDIEKTLSEVLDSFEREQQAFNLEHAQSRIAATIACHAA 597

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I+    +   +M  LL E+ K  +   C HGRP  ++  + DI+K F R
Sbjct: 598 IKVNMPLTQDKMEWLLAELAKTEHPMTCPHGRPIVLRYSVKDIQKAFKR 646


>gi|168492131|ref|ZP_02716274.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573591|gb|EDT94119.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC0288-04]
          Length = 649

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V +LFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVENLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFKISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ +   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEVESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|168486054|ref|ZP_02710562.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570845|gb|EDT91373.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC1087-00]
          Length = 649

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|189485479|ref|YP_001956420.1| DNA mismatch repair protein MutL [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|238058939|sp|B1H0C7|MUTL_UNCTG RecName: Full=DNA mismatch repair protein mutL
 gi|170287438|dbj|BAG13959.1| DNA mismatch repair protein MutL [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 595

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 184/601 (30%), Positives = 304/601 (50%), Gaps = 14/601 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  LS++ +N+IAAGE++ERP  A+KEL+ENSLDA +S +   I   GK   +++DNG
Sbjct: 1   MPINILSQETVNKIAAGEVVERPLNAVKELVENSLDAFASSITVEIEEAGKKLIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           FGM  +++ +++ RH TSKI D  D  +IH+ GFRGEAL SI AVS+  + +R    N+G
Sbjct: 61  FGMDKKDLELSILRHATSKIDDFKDLMHIHSLGFRGEALASIAAVSNFAIKTRKKGENSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +++++G K   V P +   GTI EV+ LFF  PAR  FLKS+  E + I + +   A+A
Sbjct: 121 WKLSVAGAKDIKVMPWSGAEGTITEVKSLFFNTPARQKFLKSDSTERSRIINSLEETALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              +SF   +     +     +   +  ERI+ ++G+DF      +     +I+L  Y  
Sbjct: 181 NYDISFKIFSENKTVF---SAAQTDSKTERIADILGKDFAKTLKNIKIDHPKISLDVYFT 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFI-LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               +  N    Y+F+N R V      +  +  +Y E+IP  +YP +++  ++DP ++DV
Sbjct: 238 GRDNSLPNKKYQYLFVNSRPVNYPKRLMHCVYQSYKESIPRDKYPGILIYTDVDPSEIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           N+HPAK  ++F +   I + + ++++ A+  +G     +    +     +    +     
Sbjct: 298 NIHPAKREVKFADENGIYDILFKALRNALMSQGHPEIKITYPPLDK--EKSAKQEVEGST 355

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG----IACAQI 413
                   Q  ++ +E +   N        +  +  D   + E    +          Q+
Sbjct: 356 APRFPKIQQPVIYAREPKPKYNYASLKQTCSIDKYADVFAKQEELTPENFDSNIKVIGQV 415

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
              YII+     L I DQHAA ER+ +E       S  I  Q +L PE  DL      L+
Sbjct: 416 FDTYIIASNKGDLYIFDQHAAAERVRYEFYLSQMKSQTIKIQQMLMPENFDLSPSISELL 475

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
             +    + LGI  E FG N+  I   PA+L   ++ Q+++ II +I D      ++ + 
Sbjct: 476 KANINIFNELGISIEEFGQNSFRITAYPALLGNISMEQIVKTIISDIEDDKHAE-IEQKR 534

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + I+ + AC  SI++G  +  IE  +L+ ++ K      C HGRPT  K+ L++IEK F 
Sbjct: 535 DKIIRS-ACRASIKAGDNVSFIEAKKLINDLFKCKQPFTCPHGRPTAYKISLNEIEKFFK 593

Query: 594 R 594
           R
Sbjct: 594 R 594


>gi|15900110|ref|NP_344714.1| DNA mismatch repair protein [Streptococcus pneumoniae TIGR4]
 gi|15902204|ref|NP_357754.1| DNA mismatch repair protein [Streptococcus pneumoniae R6]
 gi|111657934|ref|ZP_01408643.1| hypothetical protein SpneT_02000883 [Streptococcus pneumoniae
           TIGR4]
 gi|116516396|ref|YP_815684.1| DNA mismatch repair protein [Streptococcus pneumoniae D39]
 gi|148983575|ref|ZP_01816894.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP3-BS71]
 gi|148987911|ref|ZP_01819374.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992754|ref|ZP_01822397.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP9-BS68]
 gi|148996599|ref|ZP_01824317.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP11-BS70]
 gi|149017847|ref|ZP_01834306.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP23-BS72]
 gi|168483814|ref|ZP_02708766.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC1873-00]
 gi|168490361|ref|ZP_02714560.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae SP195]
 gi|168576395|ref|ZP_02722278.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae MLV-016]
 gi|182683158|ref|YP_001834905.1| DNA mismatch repair protein [Streptococcus pneumoniae CGSP14]
 gi|221231085|ref|YP_002510237.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae ATCC
           700669]
 gi|237649752|ref|ZP_04524004.1| DNA mismatch repair protein [Streptococcus pneumoniae CCRI 1974]
 gi|237821450|ref|ZP_04597295.1| DNA mismatch repair protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230110|ref|ZP_06963791.1| DNA mismatch repair protein [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255027|ref|ZP_06978613.1| DNA mismatch repair protein [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501976|ref|YP_003723916.1| DNA mismatch repair protein [Streptococcus pneumoniae TCH8431/19A]
 gi|303255123|ref|ZP_07341199.1| DNA mismatch repair protein [Streptococcus pneumoniae BS455]
 gi|307066856|ref|YP_003875822.1| DNA mismatch repair protein [Streptococcus pneumoniae AP200]
 gi|61225739|sp|P0A3R1|HEXB_STRPN RecName: Full=DNA mismatch repair protein hexB
 gi|61225740|sp|P0A3R2|HEXB_STRR6 RecName: Full=DNA mismatch repair protein hexB
 gi|122279430|sp|Q04MR4|MUTL_STRP2 RecName: Full=DNA mismatch repair protein mutL
 gi|238691184|sp|B2IS10|MUTL_STRPS RecName: Full=DNA mismatch repair protein mutL
 gi|254766177|sp|B8ZKC9|MUTL_STRPJ RecName: Full=DNA mismatch repair protein mutL
 gi|14971640|gb|AAK74354.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae TIGR4]
 gi|15457702|gb|AAK98964.1| DNA mismatch repair protein [Streptococcus pneumoniae R6]
 gi|116076972|gb|ABJ54692.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae D39]
 gi|147757174|gb|EDK64213.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP11-BS70]
 gi|147923722|gb|EDK74834.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP3-BS71]
 gi|147926375|gb|EDK77448.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928480|gb|EDK79495.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP9-BS68]
 gi|147931411|gb|EDK82389.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP23-BS72]
 gi|172042907|gb|EDT50953.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           CDC1873-00]
 gi|182628492|gb|ACB89440.1| DNA mismatch repair protein [Streptococcus pneumoniae CGSP14]
 gi|183393266|gb|ACC61793.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|183393272|gb|ACC61796.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|183571322|gb|EDT91850.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae SP195]
 gi|183577800|gb|EDT98328.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae MLV-016]
 gi|202073440|gb|ACC61792.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|202073445|gb|ACC61795.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|220673545|emb|CAR68031.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae ATCC
           700669]
 gi|251765212|gb|ACC61794.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|298237571|gb|ADI68702.1| DNA mismatch repair protein [Streptococcus pneumoniae TCH8431/19A]
 gi|301799330|emb|CBW31865.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae OXC141]
 gi|301801125|emb|CBW33798.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae INV200]
 gi|302597953|gb|EFL65023.1| DNA mismatch repair protein [Streptococcus pneumoniae BS455]
 gi|306408393|gb|ADM83820.1| DNA mismatch repair enzyme (predicted ATPase) [Streptococcus
           pneumoniae AP200]
 gi|332075846|gb|EGI86313.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA17570]
 gi|332202095|gb|EGJ16164.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA41317]
 gi|332203336|gb|EGJ17403.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA47368]
 gi|332204187|gb|EGJ18252.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA47901]
          Length = 649

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|302038646|ref|YP_003798968.1| DNA mismatch repair protein MutL [Candidatus Nitrospira defluvii]
 gi|300606710|emb|CBK43043.1| DNA mismatch repair protein MutL [Candidatus Nitrospira defluvii]
          Length = 599

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/595 (30%), Positives = 316/595 (53%), Gaps = 7/595 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   +I +IAAGE++ERP+  +KEL+ENSLDA SS +   +  GG    ++TD+G 
Sbjct: 9   KIQVLPSDVIGRIAAGEVVERPAAVVKELVENSLDAGSSTITVEVKDGGLGLIRVTDDGE 68

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  +A +RH TSK+  D     I T GFRGEALPSI AVS + L +   Q   G 
Sbjct: 69  GMSRRDASLAFERHATSKLQSDQQLGAIRTMGFRGEALPSIAAVSKVRLTTLSRQEQVGT 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ ++   I+ V   A  PGT +EV +LF+  PAR  FLKS   E + I+ V+++ A+A 
Sbjct: 129 QLWLTAGTITRVEDAAAIPGTSIEVLELFYNTPARRKFLKSTTTEFSHISHVVQQAALAS 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V           + +    +     +R+ QV    F + A+ ++ + N ++L+G+   
Sbjct: 189 PQVHMRLIHNGYEVFALPAVPSP---RDRVLQVYRAAFGDRALAVDVQQNGLSLKGFIID 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R       +F+N R +++  +   +   Y+  +  G  P+ VL L+++P++VDVNV
Sbjct: 246 PVRARAGRTPQELFVNRRPIKNSTVQHAVVDGYSSFLAKGHAPLFVLFLDVEPQRVDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF +   I   +  +++  + +  I +S   +       +  +   T + +  
Sbjct: 306 HPTKREVRFADNEQIHQLVRSAVRHTLGRAHIESSMAGAAHAHPDGNGVSHAATSVEEAG 365

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              T      F + N    +     +  ++    +     +A      +   Q+H+ Y+I
Sbjct: 366 VEPTGLSYPPFARVNVPVPSTPSAENQTSFVR--EGAMPYQAGEAVDIVPLGQMHRTYVI 423

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  D L ++DQH AHER++FE++ + +    + SQ LL PE ++L   +  ++  H  +
Sbjct: 424 AQVGDELQVIDQHTAHERVLFERLLRAWQGKSLPSQPLLLPEPLELPVQQALILQRHLAE 483

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L RLG+  E FGP++  IR +P +L   ++  L++D+ID++    +  +L+ +++ ILA+
Sbjct: 484 LERLGLLIEPFGPSSFLIRSLPVMLGHPDLAALVQDLIDDLEQWDSISSLETKVKPILAS 543

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC+G++R+GR M   E+ +L ++     +   C HGR    +L   ++ +LF R
Sbjct: 544 LACHGAVRAGRAMVLPEIKQLAQDWVAEGSIMTCPHGRRVAFRLSGDELARLFDR 598


>gi|261856601|ref|YP_003263884.1| DNA mismatch repair protein MutL [Halothiobacillus neapolitanus c2]
 gi|261837070|gb|ACX96837.1| DNA mismatch repair protein MutL [Halothiobacillus neapolitanus c2]
          Length = 617

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 196/618 (31%), Positives = 331/618 (53%), Gaps = 27/618 (4%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L  +++NQIAAGE++ERP+  +KEL+EN++DA + R++  I   G    ++ D+
Sbjct: 1   MPHIAQLPPELVNQIAAGEVVERPASVVKELVENAIDAGARRIDVRIEEAGSRLIEVRDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P+A   H TSKI   D+  ++ T GFRGEAL SI +++ +++ SR  ++  
Sbjct: 61  GSGMSEEDLPLAFAAHATSKIRSLDELESVATMGFRGEALASIASIAQVSVSSRRERDAH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G  ++ +  +    RP A   GT V V DLF+  PAR  FL++E+ E + I  ++RR A+
Sbjct: 121 GWILSPN--ESLECRPTAHPVGTTVTVADLFYNTPARRKFLRTERTEFSQIDQLMRRFAL 178

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG---NFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           A+P + F+ +      ++++           P RI  ++G +F+N A  ++  ++ ++L 
Sbjct: 179 AHPGIGFSLTHQGRLVFELSPLPRAQLAEQMPARIEALLGAEFLNRARRIDSAASGLSLS 238

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+   P + R   +Q   F+NGR V+D+ I   IR AYA+ +   R P  VL L+++PR 
Sbjct: 239 GWVADPAYARSTTDQQLFFVNGRIVRDRLIGFAIRRAYADVLHHARQPAYVLALDLEPRA 298

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI-------------STSSVLSKKM 341
           VDVNVHP K+ +RFR+   +++FI + I +A+ +  +               +      M
Sbjct: 299 VDVNVHPTKAEVRFRDARAVQDFIFREIHRALAQGAVAGAQQESGVEQASRGAPAFDAGM 358

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
                 D    T     +   ++ Q  L L     +   L+ +   +  E +   ++   
Sbjct: 359 GRGERVDGWSGTASMPSSAPSSSVQGYLNLLAASAAAPQLVDACLSSVQEPSQ-AQQPTQ 417

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
               LG A A +H  YI++Q   GLVIVD HAA ER+ +E+++  + + ++T Q LL P 
Sbjct: 418 DMPPLGYAVAHLHGVYILAQNAQGLVIVDAHAAAERITYERLKAAYAAQQMTIQPLLLPV 477

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII---- 517
              + E E        E   RLG+   R  P  + +  + A+L   +   L R ++    
Sbjct: 478 TFAVTESEAEQYEAQAEAFARLGVVLARVAPTRVRVTALAALLRHADAEALARALLSALS 537

Query: 518 DEIIDSSTTYT-LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +E  D       L + I  +L+ MAC+GS+R+ R +   EM+ LLR+ME+   + QCNHG
Sbjct: 538 EEEPDWGQPQAVLTEPINAVLSRMACHGSVRANRILARPEMDALLRDMERTERADQCNHG 597

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ +L ++D+++LF R
Sbjct: 598 RPTWRQLSMTDLDRLFMR 615


>gi|149927687|ref|ZP_01915939.1| DNA mismatch repair protein [Limnobacter sp. MED105]
 gi|149823513|gb|EDM82743.1| DNA mismatch repair protein [Limnobacter sp. MED105]
          Length = 624

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 190/623 (30%), Positives = 316/623 (50%), Gaps = 35/623 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+++RP+  +KEL+EN+LDA +S +   I GGG     I DNG 
Sbjct: 5   PISLLPDVLISQIAAGEVVDRPASVVKELLENALDAGASEITVRIDGGGIQRICIQDNGK 64

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +AV RH TSKI    +  ++ + GFRGEAL SI +VS  TL S P    +  
Sbjct: 65  GIPKDELELAVTRHATSKIQSLSELESVLSLGFRGEALASIASVSQFTLSSYPKGQESAY 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I+    +     P   +PGT V+V+ L+F+ PAR  FLK+EQ E     DV++RMA+A 
Sbjct: 125 SISNQSGRWLV-EPSPASPGTTVDVQSLYFSTPARRKFLKTEQTEFFQCLDVVKRMALAN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V++           +  +    ++  R+  ++       +  ++ ++ ++ L G  G+
Sbjct: 184 PSVTWLVYRDGK----LQSRFQESSWSARVFSILETMANGASKPIDVQTADMQLHGAVGL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG  +  + ++NGR V+DK I   +R+AY + +   ++P  VL L +   +VDVNV
Sbjct: 240 PDAARGKGDMQFFYVNGRFVKDKLIGHAVRSAYEDVLHGDKFPAFVLFLNLPATEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI------STSSVLSKKMISSFHQDNAPKT 353
           HPAK+ +RFRN   +  ++ QSIQ  +           S SSV       +        +
Sbjct: 300 HPAKTEVRFRNARAVHQWVRQSIQACLAPSRAVVPLSDSPSSVGVSAPAIATPPATTSGS 359

Query: 354 HLPKYATSLTNTQEKLFLQE---------------------NRLSTNDLLPSDDPTYSED 392
                A+S ++   ++  +                         S               
Sbjct: 360 GNVWRASSDSSPAIQVQAKSAALPFLREELADYIQAYRPLAPAQSAPRPANITAQPKMPG 419

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK- 451
           N    ++      LG A AQ+H  YI++   DG+V+VD HAAHER+++E+ +   ++ + 
Sbjct: 420 NTQPSQAADEAEYLGQAIAQVHGIYILALRPDGMVVVDMHAAHERVLYEQFKNALDNQQT 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           I+SQ LL P ++ +     + +        +LG +        IA+R +P +L+ +++  
Sbjct: 480 ISSQELLVPLLVQIDPRLASEVDHGQHLWEKLGFRLSLISTQEIAVRAVPTMLAGQDLSA 539

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           LL+  ++++      + L+ +    LA +AC+ ++R+ RK+   EMN LLR ME+   S 
Sbjct: 540 LLQQWLEDLHQYGVAHVLERQRNEWLAGLACHTAVRANRKLTVPEMNALLRSMERTERSD 599

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+    LS+++K F R
Sbjct: 600 QCNHGRPTWRHFSLSEMDKWFLR 622


>gi|225855945|ref|YP_002737456.1| DNA mismatch repair protein [Streptococcus pneumoniae P1031]
 gi|225860206|ref|YP_002741715.1| DNA mismatch repair protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|254766180|sp|C1CI68|MUTL_STRZP RecName: Full=DNA mismatch repair protein mutL
 gi|254766181|sp|C1CP43|MUTL_STRZT RecName: Full=DNA mismatch repair protein mutL
 gi|225726107|gb|ACO21959.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae P1031]
 gi|225727696|gb|ACO23547.1| DNA mismatch repair protein MutL [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|327390582|gb|EGE88922.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA04375]
          Length = 649

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVDQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|332076625|gb|EGI87087.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA17545]
          Length = 649

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEEQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|332077480|gb|EGI87941.1| DNA mismatch repair MutL family protein [Streptococcus pneumoniae
           GA41301]
          Length = 649

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 312/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLALFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRSELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|73921024|sp|Q5X9H5|MUTL_STRP6 RecName: Full=DNA mismatch repair protein mutL
          Length = 660

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 317/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYFGAVDNSVKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+  + +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLNRLENEEKSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|21911341|ref|NP_665609.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS315]
 gi|28896715|ref|NP_803065.1| DNA mismatch repair protein [Streptococcus pyogenes SSI-1]
 gi|25090724|sp|Q8K5J6|MUTL_STRP3 RecName: Full=DNA mismatch repair protein mutL
 gi|21905556|gb|AAM80412.1| putative DNA mismatch repair protein [Streptococcus pyogenes
           MGAS315]
 gi|28811969|dbj|BAC64898.1| putative DNA mismatch repair protein [Streptococcus pyogenes SSI-1]
          Length = 660

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 316/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYFGTVDNSVKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|319936494|ref|ZP_08010910.1| DNA mismatch repair protein mutL [Coprobacillus sp. 29_1]
 gi|319808609|gb|EFW05161.1| DNA mismatch repair protein mutL [Coprobacillus sp. 29_1]
          Length = 611

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 175/613 (28%), Positives = 292/613 (47%), Gaps = 26/613 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR+L + + N+IAAGE++ERPS  +KEL+ENS+DA ++R+E  I  GG    ++ DNG 
Sbjct: 3   KIRQLDDVLSNKIAAGEVVERPSSVVKELVENSVDAGATRIEVFIEDGGLQKIKVVDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +   RH TSKI D  D  NI T GFRGEA+PSI +VSH  L +   +   G 
Sbjct: 63  GMAREDARLCFSRHATSKIKDDHDLFNIMTLGFRGEAIPSIASVSHFDLRTSTGEE--GT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     K        +  GT + V  LF  +PARL +LKS   E   I   + R+A+AY
Sbjct: 121 YVQYEFGKYKDEGICDLPRGTQMTVTKLFQNVPARLKYLKSVNSEFASIHQYVERIALAY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++ T        ++ N     GN  E I+ + G     N + ++ +++E  + GY   
Sbjct: 181 PTIAITLYHNDKMIFQTN---GKGNLLEVIASMFGVSTAKNMLPISLENDEFEMSGYISK 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +R +       +N R V++   +  I +AY   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 238 IDTSRASKTNIITLVNHRYVKNAMSIDAINSAYRAYLADNRYPIAVINIEVDPYLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  +RF     +R+ I   +  A+ +  ++      +    +F       T      
Sbjct: 298 HPSKLEVRFSKEYELRDLIYNGVLDALQQVDLTYQVKNKQTERETFKPQLDQVTFDLPEE 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG------------ 407
             +   Q  +    +   T DL+        ++   + +++    +              
Sbjct: 358 KPIVYIQPAVQSVSHDSQTTDLIDEQYANMVQEEKVIYQNDEMSCKSLEKTTSHETFQQK 417

Query: 408 ------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
                  A  QIH  Y+I +   G+ +VDQHAA ER+ +E  ++ F+   +T Q LL P 
Sbjct: 418 PIKEKIYAKTQIHGTYLIGENEKGMYMVDQHAAQERINYEYYKEQFSHLDLTMQPLLVPL 477

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
             +    E  ++ E    L ++GI  E FG +   +R +P  + K +    + +++ EI+
Sbjct: 478 QFEYPMSEFLILEERKGILEKVGINLEVFGEHGYILRNLPLWMKKIDENIFVDEMVQEIL 537

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
             +    +    E+ +AT++C  S+++   +   +M  +   + +  N   C HGRPT +
Sbjct: 538 KKNHLDVV-ALQEHAIATLSCKASLKANTYLSPSDMQTIFDNLMRCENPYVCPHGRPTIL 596

Query: 582 KLKLSDIEKLFGR 594
                ++EKLF R
Sbjct: 597 FYSDYELEKLFKR 609


>gi|94989445|ref|YP_597546.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS9429]
 gi|94993334|ref|YP_601433.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS2096]
 gi|123257691|sp|Q1J9C2|MUTL_STRPB RecName: Full=DNA mismatch repair protein mutL
 gi|123258098|sp|Q1JJH1|MUTL_STRPC RecName: Full=DNA mismatch repair protein mutL
 gi|94542953|gb|ABF33002.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS9429]
 gi|94546842|gb|ABF36889.1| DNA mismatch repair protein mutL [Streptococcus pyogenes MGAS2096]
          Length = 660

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 317/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLVISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYSGAVDNSVKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+  + +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLNRLENEEQSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGDVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|50915149|ref|YP_061121.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS10394]
 gi|50904223|gb|AAT87938.1| MutL [Streptococcus pyogenes MGAS10394]
          Length = 673

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 317/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 14  MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 73

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 74  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 133

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 134 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 193

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 194 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 250

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 251 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 310

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 311 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 370

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 371 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYFGAVDNSVKVEKAELLPHSEEVIGPSSVK 430

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+  + +E  E + +       Q+H  Y+ +Q  D
Sbjct: 431 HASRPQNTFTETDHPNLDLKNRQKLSQMLNRLENEEKSVFPELDYFGQMHGTYLFAQGKD 490

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 491 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 550

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 551 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 609

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 610 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 659


>gi|315612294|ref|ZP_07887208.1| DNA mismatch repair protein HexB [Streptococcus sanguinis ATCC
           49296]
 gi|315315687|gb|EFU63725.1| DNA mismatch repair protein HexB [Streptococcus sanguinis ATCC
           49296]
          Length = 649

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGQVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEITGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKERELMALLSEAISNSLKEQALIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E +  + D 
Sbjct: 361 TLYYEKTEVTRASQAEVADHQVELTEEGQDLTLFAKETLEQLTKPAKLHFAERKPVSYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLRERMPLLEEVGVFLAEYGANQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKKV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|83589962|ref|YP_429971.1| DNA mismatch repair protein MutL [Moorella thermoacetica ATCC
           39073]
 gi|83572876|gb|ABC19428.1| DNA mismatch repair protein MutL [Moorella thermoacetica ATCC
           39073]
          Length = 620

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/621 (28%), Positives = 293/621 (47%), Gaps = 39/621 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L     NQIAAGE++ERP+  +KEL+ENSLDA +  +   I GGG    ++ D+G 
Sbjct: 8   RITILDAMTANQIAAGEVVERPASVVKELVENSLDAAARHITVEIEGGGLQLIRVRDDGR 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+ P+A  RH TSKI    D + I T GFRGEAL SI AV+ + + +RPP    G 
Sbjct: 68  GIEPEDAPLAFARHATSKIRRAADLARITTLGFRGEALASIAAVARVEMATRPPGRPGGT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + ++G K   V      PGT V V+DLF+  PAR  +LK    E   I   + R+A+ +
Sbjct: 128 LVRVAGGKPPEVTETGCPPGTSVTVKDLFYNTPARRQYLKKPSTEARAIVATVERLALGH 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+ S       +      NG+    ++ + G +     +  N      +L G+T  
Sbjct: 188 PGVAFSLSLDGR---RSLATPGNGDLQAVLAALYGLEIGRELLPFNGSGAGWSLHGFTSP 244

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +Q  + INGR + ++ +   I + Y   IP GR+P+ VL L +DP +VDVNV
Sbjct: 245 PWLHRSNRDQQVLLINGRYITNRLLTWAIESCYRNVIPAGRHPLFVLHLAVDPGEVDVNV 304

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-------------KMISSFH 346
           HPAK  +R +    +   +   ++ A+        + +S+             +   +F 
Sbjct: 305 HPAKLEVRLQREQDLARQVTNLVKGALFTPRAVAPATISRSGDRKGAGSAPPVQQGFTFR 364

Query: 347 QDNAPKTHLPKY-------ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV--- 396
           + +    +  +Y               EK       + T ++   + P   +  DP+   
Sbjct: 365 EPDKQARYWGEYVLRERARENREPEWPEKTGENTGAIKTREVPEGNGPVERDKPDPIGPE 424

Query: 397 ---EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
              EE+         A  Q+   YI++   DGL I+DQHAAHER  +E + ++       
Sbjct: 425 TPAEETGKQVLPPLRALGQVFNTYILAGGEDGLYIIDQHAAHERCRYEALVKEGTPGSHP 484

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           +Q L  P  + L       +++    L  LG   E FG     +R +P  +      ++L
Sbjct: 485 AQMLEPPLPLHLAPDMQVKLIDQIITLRELGFIIEEFGTGVFLLRSVPLGIPPGKEREVL 544

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            D + E     +T    +R   +L  +AC+G+I++G+ +   EM +LL ++    +   C
Sbjct: 545 EDFLAE-----STLPAPER---LLKLIACHGAIKAGQSLAGAEMQKLLDDLRGVDHPYTC 596

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRP  ++L  + + + F R
Sbjct: 597 PHGRPAVVRLDEAQLARYFHR 617


>gi|266623036|ref|ZP_06115971.1| DNA mismatch repair protein MutL [Clostridium hathewayi DSM 13479]
 gi|288865200|gb|EFC97498.1| DNA mismatch repair protein MutL [Clostridium hathewayi DSM 13479]
          Length = 662

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 181/663 (27%), Positives = 292/663 (44%), Gaps = 73/663 (11%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L +  IN+IAAGE+IERP+  +KEL+EN++DA ++ V   I  GG +F ++TDN
Sbjct: 1   MPNITLLDQNTINKIAAGEVIERPASVVKELLENAIDARATAVTVEIKEGGTTFIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  EE+P+A  RH TSKI   +D   I + GFRGEAL SI AV  + L+++  +  T
Sbjct: 61  GCGIPREEVPLAFLRHSTSKIKSVEDLFTISSLGFRGEALASIAAVCQVELITKTSEALT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G++  I G     +  +    GT    R+LF+  PAR  FLK+   E + + +++ ++A+
Sbjct: 121 GSRYQIEGGMERPLEEIGAPEGTTFIARNLFYNTPARRKFLKTPMTEGSHVAELVEKIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P++S  F     N+      S N N  + I  V G +   N + +  K  +I++ G+ 
Sbjct: 181 SHPEISIRFIQNNQNKLH---TSGNHNLKDIIYTVFGREIAANLLAVEAKKQDISISGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    FINGR ++   I   I  AY   +   +YP  +L   I+P  +DV
Sbjct: 238 GKPVIARGNRNYENYFINGRYIRSSIISKAIEEAYKPFMMQHKYPFTMLHFTIEPELLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RFR+  ++   +  ++  A+  K +     L+K       ++   +   P+
Sbjct: 298 NVHPTKMELRFRDGEMVYRMVYDAVSGALAHKELIPEVELNKDRTDQEAKEARKREPSPE 357

Query: 358 Y------------------------ATSLTNTQEKLFLQEN-------RLSTNDLLPSDD 386
                                        +  ++  FL EN          TN L     
Sbjct: 358 PFELRRLEAMSRQQAACAPGSKRLKPAEPSLMKDPDFLAENWLKKPAAPPETNPLRGPSQ 417

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH-------------- 432
                  +            G      H N   +   + L + D                
Sbjct: 418 EPVPSSREEAAAVTKPAAPEGETITPEHDNTAGAGKPEQLDLFDGKLLEPKSRQMHKLIG 477

Query: 433 ----------------AAHERLIFEKMRQDFN-----STKITSQTLLTPEIIDLLEGECA 471
                              +    EK+  +       + + +SQ L  P I+ L   E  
Sbjct: 478 QVFDTYWLVEFNEQLYIIDQHAAHEKVLYEKTMATLKNREYSSQMLDPPIILTLNMNEEV 537

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
           L+ EH +    +G + E FG    A+R +PA L       LL ++ID + D   +    D
Sbjct: 538 LLKEHMKYFSDMGFEIEPFGGREYAVRGVPANLLSIAKKDLLIEMIDGLSD-DVSTHNPD 596

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            I + +ATM+C  +++ G ++ + E N L+ ++    N   C HGRPT I +   ++EK 
Sbjct: 597 IIYDRVATMSCKAAVKGGNRLSAAEANELIDQLLNLENPYACPHGRPTIISMSKYELEKK 656

Query: 592 FGR 594
           F R
Sbjct: 657 FKR 659


>gi|19746988|ref|NP_608124.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS8232]
 gi|25090741|sp|Q8NZ25|MUTL_STRP8 RecName: Full=DNA mismatch repair protein mutL
 gi|19749243|gb|AAL98623.1| putative DNA mismatch repair protein [Streptococcus pyogenes
           MGAS8232]
          Length = 660

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 316/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLVISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYFGAVDNSVKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|139474561|ref|YP_001129277.1| DNA mismatch repair protein [Streptococcus pyogenes str. Manfredo]
 gi|166232111|sp|A2RGV3|MUTL_STRPG RecName: Full=DNA mismatch repair protein mutL
 gi|134272808|emb|CAM31085.1| DNA mismatch repair protein MutL [Streptococcus pyogenes str.
           Manfredo]
          Length = 660

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 317/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYFGAVDNSVKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+  + +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLNRLENEEKSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEADSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|227524331|ref|ZP_03954380.1| DNA mismatch repair protein [Lactobacillus hilgardii ATCC 8290]
 gi|227088562|gb|EEI23874.1| DNA mismatch repair protein [Lactobacillus hilgardii ATCC 8290]
          Length = 651

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/640 (27%), Positives = 304/640 (47%), Gaps = 53/640 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L   + NQI+AGE++ERP+  +KEL+EN++DA S+ ++  +   G    ++ D+G 
Sbjct: 6   RIHELPAILANQISAGEVVERPASVVKELVENAIDAHSTEIDITVEDSGLKVIKVVDDGD 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S ++  A  RH TSKI++  D   + T GFRGEALPSI +VS++ L +     + G 
Sbjct: 66  GIDSSQVQTAFLRHATSKITEQRDLFRVRTLGFRGEALPSISSVSNVELKTST--GSVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G K  S +      GT V V  LF+  PARL +L S   E + I+D++ R+A+++
Sbjct: 124 EVVFKGGKFISQQASESRKGTTVIVSSLFYNTPARLKYLSSPNTELSKISDIVNRLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF+F +      ++   S  G+  + +  + G   ++    +  K+ +I++ GY  +
Sbjct: 184 PEVSFSFISNGR---ELLRTSGRGDLLQVLGAIYGVKTVSKMQPIKSKTPDISIDGYVSL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  +  ++   Y   + +GR+P+ V+ +  DP  +DVNV
Sbjct: 241 PELTRSSRNYISLILNGRYVRNFPLTKSVINGYGSKLMIGRFPIAVVNISADPALIDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------------- 345
           HP K  +R      I   +  +I++ +  K +   +    K   +               
Sbjct: 301 HPTKQEVRISEEPKIGGMLSNAIREMLADKQLIPDATRDFKKSFAPSDQSINYSKSVIQS 360

Query: 346 ---HQDNAPKTHLPKYATSLTNT------QEKLFLQENRLSTNDLLPSDDPTYSEDND-- 394
               Q        P  +T   N       + +  LQ  R++  D L S + +     D  
Sbjct: 361 IPEEQPLFAVNSKPVVSTKQQNEVDPIVIKNRDDLQSPRVAKLDSLLSSEASSVPVFDES 420

Query: 395 -----------------PVEESE---ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                              E+ E    T +       QIH  Y++++T + + ++DQHAA
Sbjct: 421 GFGVTAKVQPKNPVQVTKPEQEELVVETGFPDLQYIGQIHGTYLVAETPNNMYLIDQHAA 480

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
            ER+ +E  RQ         Q LL P ++D    +  L+ E    L+ LGI  E+FG N+
Sbjct: 481 QERINYEYYRQAIGEVGRAQQKLLVPIVLDYSTSDFLLVNEKIPLLNELGIHLEQFGQNS 540

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             IRE P           +++++D I+ S    ++    E     M+C  +I++   +  
Sbjct: 541 FIIREHPMWFKAGQEESTIKEMVDWIL-SDHRLSVAAFREKTAIMMSCKRAIKANHHLDE 599

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   LL ++ +  N   C HGRPT +K    DIEK+F R
Sbjct: 600 RQAKALLAKLPECENPYNCPHGRPTLVKFTNEDIEKMFKR 639


>gi|306826472|ref|ZP_07459783.1| DNA mismatch repair protein MutL [Streptococcus pyogenes ATCC
           10782]
 gi|304431331|gb|EFM34329.1| DNA mismatch repair protein MutL [Streptococcus pyogenes ATCC
           10782]
          Length = 660

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 315/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLVISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYFGAVDNSVKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R          Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEVDSRLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|307708033|ref|ZP_07644502.1| DNA mismatch repair protein MutL [Streptococcus mitis NCTC 12261]
 gi|307615923|gb|EFN95127.1| DNA mismatch repair protein MutL [Streptococcus mitis NCTC 12261]
          Length = 649

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 313/636 (49%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PTKQEVRISKEKELMALVSEAIANSLKEQTLIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 357 ----KYATSLTNTQ-------------------------------EKLFLQENRLSTNDL 381
               +   S+ ++Q                                KL   E + +  D 
Sbjct: 361 TLYYEKTESIRSSQAEVADYQVELTEEGQDLTLFAKETLDQLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMTHLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|306826020|ref|ZP_07459356.1| DNA mismatch repair protein HexB [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431736|gb|EFM34716.1| DNA mismatch repair protein HexB [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 649

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/636 (28%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAMDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  + P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEIIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEITGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I K++ ++ +   ++ +    +  + +   +T LP    
Sbjct: 301 PTKQEVRISKERELMKLVSEAIAKSLKEQTLIPDALENLAKSTLRNCEKVEQTTLPLKEN 360

Query: 361 SLTNTQE---------------------------------------KLFLQENRLSTNDL 381
            L   Q                                        KL   E +  + D 
Sbjct: 361 MLYYEQPAITSPTQAEVADHQVELTEEGQDLTLFAKETLEQLTKPAKLHFAERKPVSYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLRERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  + ++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMVEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|261419512|ref|YP_003253194.1| DNA mismatch repair protein [Geobacillus sp. Y412MC61]
 gi|319766327|ref|YP_004131828.1| DNA mismatch repair protein MutL [Geobacillus sp. Y412MC52]
 gi|261375969|gb|ACX78712.1| DNA mismatch repair protein MutL [Geobacillus sp. Y412MC61]
 gi|317111193|gb|ADU93685.1| DNA mismatch repair protein MutL [Geobacillus sp. Y412MC52]
          Length = 630

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 296/631 (46%), Gaps = 43/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL + + N+IAAGE++ERP+  +KEL+EN++DA S+ +   +   G +  ++ DNG 
Sbjct: 3   RIRKLDDLLANKIAAGEVVERPASVVKELVENAIDAHSTVINIELEEAGMAKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSKI +  D   I T GFRGEALPSI +VS + L      +  G 
Sbjct: 63  GMEEDDCLLAFERHATSKIHNEHDLFRIRTLGFRGEALPSIASVSEVELT-TGTGSGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  + S    A   GT + V +LFF  PARL ++K+   E     DV+ R+A+A+
Sbjct: 122 KLVLQGGALVSRERAAGRKGTDITVSNLFFNTPARLKYMKTIHTELGHAADVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF           +   + +G+    ++ + G +     + +  +S + T++GY   
Sbjct: 182 PDVSFRLRHQGK---TLLATNGSGDVRHVLAAIYGAETARQMIPIEAESLDFTVRGYISP 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V+   ++  I   Y   +P+GRYP+V L +E+DP  VDVNV
Sbjct: 239 PDVTRASRNYISLVVNGRYVRSVPLMKAIEAGYHTLLPIGRYPIVFLSIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-SSFHQDNAPKTHLPKY 358
           HPAK  +RF     +   +  +I++A  ++ +  S     KM      Q     TH  + 
Sbjct: 299 HPAKLEVRFSKEAELNELVTDAIRQAFRERTLIPSVSADSKMAKPKAEQAAWTFTHRVRE 358

Query: 359 ATSLTN---------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            + L++               T +    + +     D     D          EE     
Sbjct: 359 PSVLSSDIGGGEDATAPFALLTGDAPAERPSAAVQTDEWGIPDEHGPAFERKQEEEVGEE 418

Query: 404 Y--------------------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                                       Q+H  YI+++   GL ++DQHAA ER+ +E  
Sbjct: 419 RRALRLPTDGQAEDKAAADRLPPLYPIGQLHGTYILAENEHGLYMIDQHAAQERINYEYF 478

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           R+         Q LL P + +    E   I    ++L R G+  E FGP A  +R  P  
Sbjct: 479 REKLGEATKEVQELLIPLMFEYPADEYERIAACRDELARCGVFLEPFGPRAFLVRSHPTW 538

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
             K    +++ ++I++++ + T   ++   E     M+C  +I++ + ++  E+  LL  
Sbjct: 539 FPKGREKEIIEEMIEQVLAAKTVD-IKQLREQAAILMSCKRAIKANQHLRQDELFALLEA 597

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  +   C HGRP  +     +IEKLF R
Sbjct: 598 LRQTTDPFTCPHGRPIIVHFSTYEIEKLFKR 628


>gi|94995292|ref|YP_603390.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS10750]
 gi|94548800|gb|ABF38846.1| DNA mismatch repair protein mutL [Streptococcus pyogenes MGAS10750]
          Length = 673

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 316/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 14  MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 73

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 74  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 133

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 134 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 193

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 194 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 250

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 251 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 310

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 311 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 370

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 371 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYSGAVDNSVKVEKAELLPHSEEVIGPSSVK 430

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 431 HASRPQNIFTETDHPNLDLKNRQKLSQMLTRLENEEKSVFPELDYFGQMHGTYLFAQGKD 490

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 491 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 550

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 551 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 609

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 610 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 659


>gi|94991382|ref|YP_599482.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS10270]
 gi|94544890|gb|ABF34938.1| DNA mismatch repair protein mutL [Streptococcus pyogenes MGAS10270]
          Length = 673

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 175/650 (26%), Positives = 316/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 14  MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 73

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 74  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 133

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 134 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 193

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 194 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 250

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 251 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 310

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 311 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 370

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 371 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYSGAVDNSVKVEKAELLPHSEEVIGPSSVK 430

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 431 HASRPQNTFTETDHPNLDLKNRQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKD 490

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 491 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 550

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           +  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 551 VFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 609

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 610 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 659


>gi|227513116|ref|ZP_03943165.1| DNA mismatch repair protein [Lactobacillus buchneri ATCC 11577]
 gi|227083691|gb|EEI19003.1| DNA mismatch repair protein [Lactobacillus buchneri ATCC 11577]
          Length = 651

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/640 (27%), Positives = 306/640 (47%), Gaps = 53/640 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L   + NQI+AGE++ERP+  +KEL+EN++DA S+ ++  +   G    ++ D+G 
Sbjct: 6   QIHELPAILANQISAGEVVERPASVVKELVENAIDAHSTEIDITVEDSGLKLIKVVDDGD 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S ++  A  RH TSKI++  D   + T GFRGEALPSI +VS++ L +     + G 
Sbjct: 66  GIDSSQVQTAFLRHATSKITEQRDLFRVRTLGFRGEALPSISSVSNIELKTST--GSVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G K  S +      GT V V  LF+  PARL +L S   E + I+D++ R+A+++
Sbjct: 124 EVVFKGGKFISQQASESRKGTTVIVSSLFYNTPARLKYLSSPNTELSKISDIVNRLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF+F +      ++   S  G+  + +  + G   ++    +  K+ +I++ GY  +
Sbjct: 184 PEVSFSFISNGR---ELLRTSGRGDLLQVLGAIYGVKTVSKMQPIKSKTPDISIDGYVSL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  +  ++   Y   + +GR+P+ V+ +  DP  +DVNV
Sbjct: 241 PELTRSSRNYISLILNGRYVRNFPLTKSVINGYGSKLMIGRFPIAVVNISADPALIDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV---------------LSKKMISS 344
           HP K  +R      I   +  +I++ +  K +   +                 SK +I S
Sbjct: 301 HPTKQEVRISEEPKIGGMLSNAIREMLADKQLIPDATRDFKKSFAPSDQSINYSKSVIQS 360

Query: 345 FHQDNAPKTHLPKYATSLTNTQE--------KLFLQENRLSTNDLLPSDDPTYSEDND-- 394
             ++        K   S     E        +  LQ  R++  D L S + +     D  
Sbjct: 361 IPEEQPLFAVNSKPVVSTKQQNEVDPIVIKNRDDLQSPRVAKLDSLLSSEASSVPVFDES 420

Query: 395 -----------------PVEESE---ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                              E+ E    T +       QIH  Y++++T + + ++DQHAA
Sbjct: 421 GFGVTAKVQPKNPVQVTKPEQEELVVETGFPDLQYIGQIHGTYLVAETPNNMYLIDQHAA 480

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
            ER+ +E  RQ         Q LL P ++D    +  L+ E    L+ LGI  E+FG N+
Sbjct: 481 QERINYEYYRQAIGEVGRAQQKLLVPIVLDYSTSDFLLVNEKIPLLNELGIHLEQFGQNS 540

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             IRE P           ++++ID I+ S    ++    E     M+C  +I++   +  
Sbjct: 541 FIIREHPMWFKAGQEESTIKEMIDWIL-SDHRLSVAAFREKTAIMMSCKRAIKANHHLDE 599

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   LL ++ +  N   C HGRPT +K    DIEK+F R
Sbjct: 600 RQAKALLAKLPECENPYNCPHGRPTLVKFTNEDIEKMFKR 639


>gi|116493021|ref|YP_804756.1| DNA mismatch repair protein [Pediococcus pentosaceus ATCC 25745]
 gi|122265515|sp|Q03EQ8|MUTL_PEDPA RecName: Full=DNA mismatch repair protein mutL
 gi|116103171|gb|ABJ68314.1| DNA mismatch repair protein MutL [Pediococcus pentosaceus ATCC
           25745]
          Length = 645

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/633 (28%), Positives = 301/633 (47%), Gaps = 46/633 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +LSE + +QIAAGE++ERP+  +KEL+EN++DA SSR++ ++   G    +I DNG G
Sbjct: 4   IHELSEILADQIAAGEVVERPASVVKELVENAIDAGSSRIDILLEESGLKMIRIIDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + + ++ +A +RH TSKIS   D   + T GFRGEALPSI +++ + +++       G +
Sbjct: 64  IDANQVEIAFKRHATSKISSRSDLFKVGTLGFRGEALPSIASIADVEMLTATTDGP-GKK 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G K+          GT + V+DLFF  PARL +LKS Q E + ITD++ R+A++YP
Sbjct: 123 IHYRGGKLEDSGDAQSRQGTDITVQDLFFNTPARLKYLKSLQTELSKITDIVNRIALSYP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+ +    +    ++   S NGN  + ++ + G       V + E++ + T+ GY  +P
Sbjct: 183 EVAISLQNNER---ELMRTSGNGNIQQVLANIYGAKNAQKMVHVKEQNIDFTIDGYISLP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F R N +   V +NGR +++  I   I   Y   + +GRYPV VL ++ DP  VDVNVH
Sbjct: 240 EFTRANRSYITVLVNGRYIKNFQISKAIIDGYGSKLMVGRYPVAVLNIKTDPILVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV------------------LSKKMI 342
           P K  +R      + + I +++   +  K +   +V                      + 
Sbjct: 300 PTKQEVRISEEQTLLDLISKAVFNELADKNLIPDAVDNLKKSRVKVSSSEQLDLARMAIS 359

Query: 343 SSFHQDNAPKT---------------------HLPKYATSLTNTQEKLFLQENRLSTNDL 381
            SF  +    T                       P    S  + +     +      ND 
Sbjct: 360 GSFEMEQDHVTIPDTDNDEVEKEVNISDRYVEPEPIVINSRQDLKSDTIAEFKTKYANDA 419

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
           + ++     +  +  E+     +       Q+H  Y+ ++  DGL I+DQHAA ER+ +E
Sbjct: 420 VVNNTVEDGDQPELKEKDAVQRFPTLTYIGQMHGTYLFAEAEDGLYIIDQHAAQERINYE 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
             R          Q LL P  +D    +   I E    L   G+  E FG N   +R  P
Sbjct: 480 YYRVQIGEVSDDQQDLLVPIYLDYSTTDAIRIKEKQTVLESCGLFLEEFGKNTFIVRHHP 539

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
               K      +++++D +++  ++ T+    E     M+C  +I++   +   +  +LL
Sbjct: 540 TWFKKGQEEDTVKEMVDYVLN-DSSMTVAKFREATAIMMSCKRAIKANHHLDEPQAKQLL 598

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++ K  N   C HGRP  +    +D+EK+F R
Sbjct: 599 KDIAKAENPFNCPHGRPVLVHFSTTDMEKMFKR 631


>gi|56808551|ref|ZP_00366285.1| COG0323: DNA mismatch repair enzyme (predicted ATPase)
           [Streptococcus pyogenes M49 591]
 gi|209560231|ref|YP_002286703.1| DNA mismatch repair protein [Streptococcus pyogenes NZ131]
 gi|238058937|sp|B5XJ09|MUTL_STRPZ RecName: Full=DNA mismatch repair protein mutL
 gi|209541432|gb|ACI62008.1| DNA mismatch repair protein MutL [Streptococcus pyogenes NZ131]
          Length = 660

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 316/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYSGAVDNSIKVEKAELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNIFTETDHPNLDLKNRQKLSQMLTRLENEEKSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|304438412|ref|ZP_07398352.1| DNA mismatch repair protein MutL [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368495|gb|EFM22180.1| DNA mismatch repair protein MutL [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 622

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 190/621 (30%), Positives = 298/621 (47%), Gaps = 34/621 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE++ERP+  +KEL+EN++DA ++ VE  I GGG SF ++TDNG 
Sbjct: 3   RIHVLDDATINKIAAGEVVERPASVVKELVENAMDAGATAVEVEIMGGGTSFIRVTDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+   A+ RH TSKI  + D   I T GFRGEALP+I +VSH +L++R   ++ G 
Sbjct: 63  GMTGEDARAAILRHATSKIAAASDLETIATLGFRGEALPTIASVSHFSLLTRQAADDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG     +       GT V V DLFF  PAR  FLK+   E   I+D + R+A++ 
Sbjct: 123 RVDISGGGTPMIEDAGCAVGTSVRVEDLFFNTPARKKFLKTNATEAGKISDYVIRLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGYT 237
           P ++F F             + +G+    I  + G D  +  + L+   +  +I + GY 
Sbjct: 183 PDIAFRFINNNRMTIM---TAGDGDLARTIGSIYGGDAASALIPLDFYDDAADIRITGYI 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+  R +       +NGRT+Q++ I   I   Y   +P   +P+ V+++ +  R +DV
Sbjct: 240 SKPSLIRSSRAWQTYIVNGRTIQNRAIAKAIDNVYRSLVPKMGFPLAVIVITVPQRTIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP---KTH 354
           NVHP K+ ++F +   I   + +++  AI      T+ + +      FH +  P    T 
Sbjct: 300 NVHPQKTEMKFEDEGRIFKAVYKAVLDAIRGAAGETTGIAAAVEKPRFHYEAVPLDVSTP 359

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY---------- 404
                ++              +                 D V+E+ A             
Sbjct: 360 SASPVSAPARGYAAPTPHPQTVHEAVQWAGARVDLRTAQDAVQEARAQERAAFSDVPSAP 419

Query: 405 -----------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                      +  +   Q+   YII+Q+T  L I+DQHAAHER++F++      +  I 
Sbjct: 420 RAAQGDDISMEERMLPIGQVDLTYIIAQSTATLYIIDQHAAHERILFDRF--SAQTDGIP 477

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ +L   I+     E   I E+ E   RLG   E  G     + E PA +  K    ++
Sbjct: 478 SQQMLVHAILSFDAHEAQYIEENAELFDRLGFHLEAAGERTYRLTETPADVPTKEAEGII 537

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           R+I+  + D  T        E  +ATMAC  +I++G ++   +M  LL E+   P    C
Sbjct: 538 REILASLGDLHTATPAN-LREAGIATMACRAAIKAGEELSIRQMEILLEELRATPFPFTC 596

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRPT +K    D+ K+F R
Sbjct: 597 PHGRPTILKFGTHDLAKMFKR 617


>gi|290968594|ref|ZP_06560132.1| DNA mismatch repair protein, C-terminal domain protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781247|gb|EFD93837.1| DNA mismatch repair protein, C-terminal domain protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 632

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 179/633 (28%), Positives = 302/633 (47%), Gaps = 47/633 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E   N+IAAGE++ERP+  IKEL+ENS+DA ++ +E  IA GG+S+ ++TD+G G
Sbjct: 5   IAVLDEATRNKIAAGEVVERPASCIKELVENSIDAGATMIEVEIADGGQSYMRVTDDGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  + + RH TSKI   +D  +I + GFRGEA+PSI AVSH  + +R  ++   + 
Sbjct: 65  MGPEDARICIVRHATSKIRTVEDIFSITSLGFRGEAVPSIAAVSHFQITTRRKEDEFASH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +   +I +   V    GT +EV DLFF  PAR  FLKS + ET  I++++ ++++A+P
Sbjct: 125 LVLQAGEIITQEQVGAPAGTTMEVSDLFFNTPARRKFLKSTRTETAKISEMLTKLSLAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE-LNEKSNEITLQGYTGI 239
            + FTF        +      +G+  E ++ + G +           ++ EI + G+ G 
Sbjct: 185 AIGFTFINNGRTTLQ---TGGSGSLQETVADIYGAEVAKEVFPLGASETEEIGVSGFVGR 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  + +       +N R V +  +   I  AY   +P   YP  +L +++DP  +DVNV
Sbjct: 242 PSILKSSRMWQTCVVNHRIVYNPMLFKAIDNAYHAMLPKAGYPFALLHIQLDPAALDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-------------------KKGISTSSVLSKK 340
           HPAK+ I+F +   +   +  +I  A+                    +     ++   + 
Sbjct: 302 HPAKTEIKFADEKAVYRAVYHAIVGALVAQEEPERIARPIAADSRQLQHREEAAADFVRT 361

Query: 341 ------------MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                        +    ++     +     ++L  +     ++E R +     P  +  
Sbjct: 362 QEPERVWEPTALTLPEIPEERRSAGYAAHRGSALQASAPVASVRERRENPYTAAPGTERD 421

Query: 389 YSEDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
           +S      E +     Q+             +   YII++    L I+DQHAAHER+ ++
Sbjct: 422 FSVALHAGEATTRPDAQIHFEEETDFVPLGAVADCYIIAKKGRDLYIIDQHAAHERVRYD 481

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           +         + SQ LLTPE ++  E +  L+ E  E   +LG      GP  I I E+P
Sbjct: 482 RF--CRQMENVPSQQLLTPEFVEADETDMVLLTEQRELFRKLGYTYSEAGPTTIRIEEVP 539

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           A L    I + L+ I   + ++   +         LA MAC G+I++G K+   EM +LL
Sbjct: 540 ADLPGGEIKESLQTICRGLRENKH-WDKATIRHRALAYMACRGAIKAGDKITIREMQKLL 598

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++ +      C HGRP  I+   +++ KLF R
Sbjct: 599 EDLFRTEKPFVCPHGRPVIIRFTAAELAKLFKR 631


>gi|15675871|ref|NP_270045.1| DNA mismatch repair protein [Streptococcus pyogenes M1 GAS]
 gi|71911617|ref|YP_283167.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS5005]
 gi|20455130|sp|Q99XN7|MUTL_STRP1 RecName: Full=DNA mismatch repair protein mutL
 gi|13623105|gb|AAK34766.1| putative DNA mismatch repair protein [Streptococcus pyogenes M1
           GAS]
 gi|71854399|gb|AAZ52422.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS5005]
          Length = 660

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 175/650 (26%), Positives = 315/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 1   MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 61  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 121 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 181 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 238 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 298 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 357

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
            +  L     +   F++E+ +S                                      
Sbjct: 358 QSRGLYYDPQKNDFFVKESAVSEKIPETDFYSGAVDNSVKVEKVELLPHSEEVIGPSSVK 417

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E    + +       Q+H  Y+ +Q  D
Sbjct: 418 HASRPQNTFTETDHPNLDLKNRQKLSQMLTRLENEGQSVFPELDYFGQMHGTYLFAQGKD 477

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 478 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 537

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 538 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 596

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 597 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 646


>gi|293376441|ref|ZP_06622673.1| DNA mismatch repair protein, C-terminal domain protein
           [Turicibacter sanguinis PC909]
 gi|325845058|ref|ZP_08168374.1| DNA mismatch repair protein MutL [Turicibacter sp. HGF1]
 gi|292644950|gb|EFF63028.1| DNA mismatch repair protein, C-terminal domain protein
           [Turicibacter sanguinis PC909]
 gi|325488934|gb|EGC91327.1| DNA mismatch repair protein MutL [Turicibacter sp. HGF1]
          Length = 609

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 180/610 (29%), Positives = 301/610 (49%), Gaps = 22/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR++SE++ N IAAGE+IERP+  +KEL+EN++DA S+ +E  +   G    ++ DNG 
Sbjct: 3   KIRRMSEQLANMIAAGEVIERPASVVKELLENAIDANSTSIEIQLQDSGVRQIRVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  +A +RH TSK+    D   I T GFRGEALPSI +VS + + +     ++G 
Sbjct: 63  GMSESDALLAFERHATSKVKTQYDIFRIQTLGFRGEALPSIASVSDVHVKT-SDGASSGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I   ++    P  M  GT +EV  LFF  PARL  +KS   E + ITD + ++A+++
Sbjct: 122 HLNIKAGEVLVNEPGVMRKGTEMEVNHLFFNTPARLKHIKSLNTELSHITDYLNKIALSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F     +   ++ N      N    I+ V G D     +  + K+++  + G+   
Sbjct: 182 PEIAFKLLNNQRLLFQTN---GQNNLQSVIASVYGFDVAKKMIPFSAKNDDFEISGFLSD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NR + N   + +NGR +++  ++ +I  AY   +P  +YP+VVL L++DP  VDVNV
Sbjct: 239 PIINRASRNYVTIIVNGRAIRNYNLMRSIIEAYHTLLPKDKYPIVVLNLKLDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------VLSKKMISSFHQDNAPKT 353
           HPAK  +RF     ++ FI   ++  + +      +      V+  K I          T
Sbjct: 299 HPAKLEVRFSQEESLKTFIYHELRNVLKQVEYIPETQIEEPKVVMPKPIQQTLSLTKEAT 358

Query: 354 HLPKYATSLTNTQEKLFLQEN---------RLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             P  A  + +       +E+              + + S +    +    V   +A   
Sbjct: 359 FKPTIAVQMVDENPIELKKESVDVKKESVHVEEVAEPMVSLEQPAQDFKVVVPTRQAIPQ 418

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  Q+H  Y+++Q  +GL IVDQHAA ER+ +EK        K     L+ P ++ 
Sbjct: 419 LELHYIGQLHGTYLLAQNEEGLFIVDQHAAMERIQYEKNYALLKDVKGDCIELIIPMVLK 478

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
               E  L+ E    L + G + E FG  ++ +R IP  +   +   ++  I+ +II   
Sbjct: 479 YSANELLLLKESLPSLMKFGFEIEEFGGQSLVVRTIPVWVQNLDAKLIVETILQQII-YD 537

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               +    E++   M+C GSI++ + +   E+ ++L ++        C HGRP  +KL 
Sbjct: 538 NKVDIGKLRESVAIMMSCKGSIKANQYINEHEIKQMLVDLCLCDQPYTCPHGRPIIVKLT 597

Query: 585 LSDIEKLFGR 594
             +IEKLF R
Sbjct: 598 KYEIEKLFKR 607


>gi|227510188|ref|ZP_03940237.1| DNA mismatch repair protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190393|gb|EEI70460.1| DNA mismatch repair protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 651

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 176/640 (27%), Positives = 303/640 (47%), Gaps = 53/640 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L   + NQI+AGE++ERP+  +KEL+EN++DA S+ ++  +   G    ++ D+G 
Sbjct: 6   QIHELPAILANQISAGEVVERPASVVKELVENAIDAHSTEIDITVEDSGLKVIKVVDDGD 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S ++  A  RH TSKI++  D   + T GFRGEALPSI +VS++ L +     + G 
Sbjct: 66  GIDSSQVQTAFLRHATSKITEQRDLFRVRTLGFRGEALPSISSVSNVELKTST--GSVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G K  S +      GT V V  LF+  PARL +L S   E + I+D++ R+A+++
Sbjct: 124 EVVFKGGKFISQQASESRKGTTVIVSSLFYNTPARLKYLSSPNTELSKISDIVNRLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF+F +      ++   S  G+  + +  + G   ++    +  K+ +I++ GY  +
Sbjct: 184 PEVSFSFISNGR---ELLRTSGRGDLLQVLGAIYGVKTVSKMQPIKSKTPDISIDGYVSL 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V++  +  ++   Y   + +GR+P+ V+ +  DP  +DVNV
Sbjct: 241 PELTRSSRNYISLILNGRYVRNFPLTKSVINGYGSKLMIGRFPIAVVNISADPALIDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------------- 345
           HP K  +R      I   +  +I++ +  K +   +    K   +               
Sbjct: 301 HPTKQEVRISEEPKIGGMLSNAIREMLADKQLIPDATRDFKKSFAPSDQSINYSKSVIQS 360

Query: 346 ---HQDNAPKTHLPKYATSLTNT------QEKLFLQENRLSTNDLLPSDDPTYSEDND-- 394
               Q        P  +T   N       + +  LQ  R++  D L S + +     D  
Sbjct: 361 IPEEQPLFAVNSKPVVSTKQQNEVDPIVIKNRDDLQSPRVAKLDSLLSSEASSVPVFDES 420

Query: 395 -----------------PVEESE---ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                              E+ E    T +       QIH  Y++++T   + ++DQHAA
Sbjct: 421 GFGVTAKVQPKNPVQVTKPEQEELVVETGFPDLQYIGQIHGTYLVAETPSNMYLIDQHAA 480

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
            ER+ +E  R+         Q LL P ++D    +  L+ E    L+ LGI  E+FG N+
Sbjct: 481 QERINYEYYRKAIGEVGRAQQKLLVPIVLDYSTSDFLLVNEKIPLLNELGIHLEQFGQNS 540

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             IRE P           ++++ID I+ S    ++    E     M+C  +I++   +  
Sbjct: 541 FIIREHPMWFKAGQEESTIKEMIDWIL-SDHRLSVAAFREKTAIMMSCKRAIKANHHLDE 599

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   LL ++ +  N   C HGRPT +K    DIEK+F R
Sbjct: 600 RQAKALLAKLPECENPYNCPHGRPTLVKFTNEDIEKMFKR 639


>gi|238927478|ref|ZP_04659238.1| DNA mismatch repair protein MutL [Selenomonas flueggei ATCC 43531]
 gi|238884760|gb|EEQ48398.1| DNA mismatch repair protein MutL [Selenomonas flueggei ATCC 43531]
          Length = 622

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/621 (30%), Positives = 306/621 (49%), Gaps = 34/621 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE++ERP+  +KEL+EN++DA ++ VE  I GGG SF ++TDNG 
Sbjct: 3   RIHVLDDATINKIAAGEVVERPASVVKELVENAMDAGATAVEVEIMGGGTSFIRVTDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+   A+ RH TSKI  + D   I T GFRGEALP+I +VSH +L++R   ++ G 
Sbjct: 63  GMTGEDARAAILRHATSKIAAASDLETIATLGFRGEALPTIASVSHFSLLTRQAADDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG     +       GT V V DLFF  PAR  FLK+   E   I+D + R+A++ 
Sbjct: 123 RVDISGGGTPMIEDAGCAVGTSVRVEDLFFNTPARKKFLKTNATEAGKISDYVIRLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGYT 237
           P ++F F             + +G+    I  + G D  +  + L+   +  +I + GY 
Sbjct: 183 PDIAFRFINNNRMTIM---TAGDGDLARTIGSIYGGDAASALIPLDFYDDAADIRITGYI 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+  R +       +NGRT+Q++ I   I   Y   +P   +P+ V+++ +  R +DV
Sbjct: 240 SKPSLIRSSRAWQTYIVNGRTIQNRAIAKAIDNVYRSLVPKMGFPLAVIVITVPQRTIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP------ 351
           NVHP K+ ++F +   I   + +++  AI      T+ + +      FH +  P      
Sbjct: 300 NVHPQKTEMKFEDEGRIFKAVYKAVLDAIRGAAGETTGIAAAVEKPKFHYEAVPLDVSTL 359

Query: 352 -----KTHLPKYATSLTNTQ----------EKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                      YA    + Q           ++ L+  + +  ++   +   +S+     
Sbjct: 360 SASPVSAPARGYAAPPPHPQTVHEAVQWAGARVDLRTAQDAVQEVRAQERAAFSDVPSAP 419

Query: 397 EESEATHYQL---GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             ++     +    +   Q+   YII+Q+T  L I+DQHAAHER++F++      +  I 
Sbjct: 420 RAAQGDDISMEERMLPIGQVDLTYIIAQSTATLYIIDQHAAHERILFDRF--SAQTDGIP 477

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ +L   I+     E   I E+ E   RLG   E  G     + E PA +  +    ++
Sbjct: 478 SQQMLVHAILSFDAHEAQYIEENAELFDRLGFHLEAAGERTYRLTETPADVPTEEAEGII 537

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           R+I+  + D  T        E  +ATMAC  +I++G ++   +M  LL E+   P    C
Sbjct: 538 REILASLGDLHTATPAN-LREAGIATMACRAAIKAGEELSIRQMEILLAELRATPFPFTC 596

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRPT +K    D+ K+F R
Sbjct: 597 PHGRPTILKFGTHDLAKMFKR 617


>gi|326803737|ref|YP_004321555.1| DNA mismatch repair protein, C-terminal domain protein [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650557|gb|AEA00740.1| DNA mismatch repair protein, C-terminal domain protein [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 632

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 171/626 (27%), Positives = 292/626 (46%), Gaps = 40/626 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E++ NQIAAGE++ERP+  +KEL+EN++DA+++ ++  +   G    Q+ DNG G
Sbjct: 2   IHELPEQVANQIAAGEVVERPASVVKELLENAIDAQATSIDIKVEEAGLKSIQVIDNGLG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E++ +A +RH TSKI  S D   I T GFRGEALPSI +V+ ++L +       G+ 
Sbjct: 62  MSGEDVKLAFKRHATSKIYHSRDLFRIKTLGFRGEALPSIASVAEVSLET--SDGKEGSS 119

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G      RP  +  GT + V +LF+  PARL  +K    E + ITDV+ R+A+A P
Sbjct: 120 ISLIGGDEVEYRPSHLRQGTTIRVENLFYNTPARLKHIKQLSTELSHITDVVNRLAMARP 179

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FT++       K+   +  G   E I+ V G     + + +  + ++  L GY   P
Sbjct: 180 DIRFTYTHDGR---KLLKTNGKGRLQEVIAAVYGFKQAQDMLAIENEDHDFQLSGYISKP 236

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N   +F+NGR +++  +  +I   YA  + +GRYP+ VL +  D + +DVNVH
Sbjct: 237 ELTRASRNYMSLFVNGRYIKNYVLSQSIIKGYASKLMIGRYPIAVLNISTDAQLLDVNVH 296

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  IR      + + I  S+Q+ ++           +   ++ HQ +           
Sbjct: 297 PTKQEIRISKEEELYDLIQSSVQERLSPLRRIPDIGKKEITETANHQASIDLKSQEDSQQ 356

Query: 361 SLTNTQEKLFLQENRL--------------------------------STNDLLPSDDPT 388
              + + ++   EN                                  ST         +
Sbjct: 357 LRFDFKNQVEPAENEAFLVKETDHGKDWQAETQTADQGKGAHRASFPPSTTTPSDLKPAS 416

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            + +   V+      +       Q+  +Y++     G+ +VDQHAA ER+ +E  R+   
Sbjct: 417 PNHEEGQVQGQRNPSFPQLDYVGQLQASYLVCSDETGMYLVDQHAAQERIKYEYFREAIG 476

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
                SQ LL P ++D    E   + +  + +  +GI  E FGPN   +   PA +    
Sbjct: 477 DMDTASQELLVPLVLDYPSSESHDVRQVLDRIRAMGIGIEEFGPNQFLVNYHPAWMGSDQ 536

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
           + + +  +I   I++   +++    E     M+C  SI++   +   +  +LL ++    
Sbjct: 537 VQEHIDSMIQLAIENKD-FSVNTYREKTAIMMSCRFSIKANHYLDDRQARQLLDDLTYCE 595

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N   C HGRP  I     +IE+ F R
Sbjct: 596 NPYNCPHGRPVLIHYSNYEIERSFKR 621


>gi|227824421|ref|ZP_03989253.1| DNA mismatch repair protein mutL [Acidaminococcus sp. D21]
 gi|226904920|gb|EEH90838.1| DNA mismatch repair protein mutL [Acidaminococcus sp. D21]
          Length = 628

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 169/630 (26%), Positives = 300/630 (47%), Gaps = 43/630 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K++ L +   NQIAAGE++E+P   +KEL+EN+LDA ++ V+  I  GG  + ++ DNG 
Sbjct: 4   KVQLLDQNTSNQIAAGEVVEKPMSVVKELVENALDAGATHVDVTIYEGGTEYIRVKDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E   +AV RH TSKI  ++D   + T GFRGEALPSI +VSH  L++R        
Sbjct: 64  GMDEENARLAVLRHATSKIVKAEDLLTLKTLGFRGEALPSIASVSHFNLLTREEGAEFAT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I G +  SV  +  + GT V V+DLF+ +PAR  FL++   E   I D++ +MA++ 
Sbjct: 124 SITIDGGENMSVDVMGGDVGTTVTVKDLFYNVPARRKFLRTVSTEGRYINDILSKMALSR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT                +G+  + I  + G++ +   + ++ + + I ++G+   
Sbjct: 184 PDVHFTLQNNDKEVLN---TPGSGDELDVIGALYGKNVVEALLPVDHEQDGIRVKGFISR 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +G      +F+N R +  + +   I  AY   IP   +P  +L L +D   +D+NV
Sbjct: 241 PTLLKGTRQWQTLFVNDRYIVSRMVSRAIDHAYQSQIPKSGFPFAMLKLTVDTHAIDINV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------------SSVLSKKMI 342
           HP KS I+F +   +   +  ++  A+      T                  S+  +  I
Sbjct: 301 HPQKSEIKFGDEQAVYRAVYHALTNALTHPMRGTENGKDEVTFKKPSPQKDESLAEEVSI 360

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV------ 396
               Q  +     P +   +  T E    + +R  T+++  +                  
Sbjct: 361 FPHSQGRSFLPQNPAFGQPIWRTPEPQVERPDRSYTDEIFGAQRTVPRATEPHAITGEET 420

Query: 397 ------------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                       E    +   +     Q+++ +I++Q+   L ++DQHAAHER+++++  
Sbjct: 421 SGGIAGSVNERGEIQAPSGIDVIWPLGQVNRTFIVAQSETSLYLIDQHAAHERIMYDRF- 479

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
                  + SQTLL P  + +   +   + EH ++  +LG+ AE  G  ++ +  +PA +
Sbjct: 480 -IRQQKPVPSQTLLMPLFLSVSAADVDAVTEHRDEFLKLGVDAEPAGETSLRVSALPADV 538

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
                   ++DI+  +++ + +    D  E +L   AC+ +IR+G  +   +M  ++ E+
Sbjct: 539 EDGEAEAFIQDILT-LLEENRSIKTSDLREEVLHYAACHSAIRAGELLNIRQMREVILEL 597

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               +   C HGRP  I++   ++ KLF R
Sbjct: 598 LNTEHPFTCPHGRPCMIEVTTPELFKLFKR 627


>gi|322377273|ref|ZP_08051765.1| DNA mismatch repair protein HexB [Streptococcus sp. M334]
 gi|321281986|gb|EFX58994.1| DNA mismatch repair protein HexB [Streptococcus sp. M334]
          Length = 649

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 178/636 (27%), Positives = 308/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKIQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVGLALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVEGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+ 
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHH 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  +R      +   + ++I  ++ ++ +   ++ +    +  ++    +T LP    
Sbjct: 301 PSKQEVRISKEKELMTLVSEAISNSLKEQTLIPDALENLAKSTVRNRQKVEQTILPLKEN 360

Query: 361 SLTNT---------------------------------------QEKLFLQENRLSTNDL 381
           +L                                            KL   E +    D 
Sbjct: 361 TLYYENTEPTRPSQAEVADYQVELTDEGQDLTLFAKETLDQLTKPAKLHFAERKPVNYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  E++ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASLDKAYDKLEREESSSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMALLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|71904450|ref|YP_281253.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS6180]
 gi|71803545|gb|AAX72898.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS6180]
          Length = 673

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 176/650 (27%), Positives = 314/650 (48%), Gaps = 60/650 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I +L E + NQIAAGE++ERP+  +KEL+EN++DA+SS++   I   G    Q+TDN
Sbjct: 14  MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEESGLKMIQVTDN 73

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+ E++P++++RH TSKI    D   I T GFRGEALPS+ ++S +T+ +   +   
Sbjct: 74  GEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEALPSVASISKITIKTATKEVTH 133

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ +  +G +I ++  ++   GT ++V +LF+  PARL ++KS Q E   I DV+ R+++
Sbjct: 134 GSLLIATGGEIETLEAISTPTGTKIKVENLFYNTPARLKYMKSLQAELAHIVDVVNRLSL 193

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+V+FT  +      ++   S  G+  + I+ + G +     + ++    +  + GY 
Sbjct: 194 AHPEVAFTLISDGR---QLTQTSGTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYV 250

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R N N   + +NGR +++  +   I   Y   + +GR+P+VV+ ++IDP   DV
Sbjct: 251 SLPELTRANRNYMTILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADV 310

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R      +   I  +I +++ ++ +   ++ +    S+ H     +T LP 
Sbjct: 311 NVHPTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKPEQTQLPL 370

Query: 358 YATSL--TNTQEKLFLQENRLST------------------------------------- 378
               L     +   F +E+ +S                                      
Sbjct: 371 QFRGLYYDPQKNDFFAKESAVSEKIPETDFYFGAVDNSVKVEKAELLPHSEEVIGPSSVK 430

Query: 379 --------------NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          +L   +    S+    +E  E + +       Q+H  Y+ +Q  D
Sbjct: 431 HASRPQNTFIETDHPNLDLKNRQKLSQMLTRLENEEQSVFPELDYFGQMHGTYLFAQGKD 490

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R        + Q LL P + +    +   + E    L+ +G
Sbjct: 491 GLFIIDQHAAQERVKYEYYRDKIGEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVG 550

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E +G N   +RE P  + ++ I   + ++ D ++ ++   +++     +   M+C  
Sbjct: 551 IFLEVYGHNTFILREHPIWMKEEEIASGVYEMCDMLLLTNEV-SIKTYRAELAIMMSCKR 609

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   +       LL ++ +  N   C HGRP  I    +D+EK+F R
Sbjct: 610 SIKANHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRR 659


>gi|186477234|ref|YP_001858704.1| DNA mismatch repair protein [Burkholderia phymatum STM815]
 gi|184193693|gb|ACC71658.1| DNA mismatch repair protein MutL [Burkholderia phymatum STM815]
          Length = 691

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/657 (28%), Positives = 311/657 (47%), Gaps = 72/657 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++ +  ++  GG     ITD+G G
Sbjct: 40  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGATALRILLDEGGVKRISITDDGCG 99

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +VS + + SR    +   +
Sbjct: 100 IPEGELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVSEMHITSRTETVSHATR 159

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +  ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 160 I---DAQTGALSPAAGTRGTTIEVRELYFNTPARRKFLKSEQTELGHCLEMIRRAALARP 216

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N      +   R+++++GE F +  + L+E +  + + G  G+P
Sbjct: 217 DVAISVLHNGRAVEHWNA----SDPATRVAKILGETFASAHLPLDESAGPLAVYGCAGLP 272

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 273 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 332

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV------LSKKMISSFHQDNAPKTH 354
           P+K  +RFR+   I  F+  ++Q+A+ +   ++            + + S    +   T 
Sbjct: 333 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTSGGHAARIEPMPSASPVSTFSTG 392

Query: 355 LPKYATSLT------------NTQEKLFLQENRLSTNDLLPSDDPT-------------- 388
            P    S              +     ++++ R++   L  +                  
Sbjct: 393 TPASFGSAPLGAGFRVGDGGGSQPGNTWMRQARMTQGTLPVAQPLALYDALFGRKDSGAG 452

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH---------------- 432
            S+    +E  +A     G        ++  +Q        + H                
Sbjct: 453 TSQGTTSLELRDAADAADGAVAPLPFGSFATAQPFAAAQSFNPHDEQPLGFALGQIHGIY 512

Query: 433 ----------AAHERLIFEKMRQDFNSTKI-----TSQTLLTPEIIDLLEGECALIMEHD 477
                             E++  +     +       Q LL P  +     E  ++ E  
Sbjct: 513 VLAQNARGLVIVDMHAAHERILYEQFKNALADRAIAVQPLLIPVSMTADAVEIGVVEEER 572

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           E L  LG       P  IAIR +PA+L   ++  L R ++ ++     +  L +R   +L
Sbjct: 573 ETLDALGFDLAVLSPTTIAIRAVPALLKDADLQALARAVLSDLHAYGGSRVLTERQHELL 632

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 633 GTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLADLDRLFMR 689


>gi|297530517|ref|YP_003671792.1| DNA mismatch repair protein MutL [Geobacillus sp. C56-T3]
 gi|297253769|gb|ADI27215.1| DNA mismatch repair protein MutL [Geobacillus sp. C56-T3]
          Length = 630

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 177/631 (28%), Positives = 297/631 (47%), Gaps = 43/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL + + N+IAAGE++ERP+  +KEL+EN++DA S+ +   +   G +  ++ DNG 
Sbjct: 3   RIRKLDDLLANKIAAGEVVERPASVVKELVENAIDAHSTVINIELEEAGMAKIRVIDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSKI +  D   I T GFRGEALPSI +VS + L      +  G 
Sbjct: 63  GMEEDDCLLAFERHATSKIHNEHDLFRIRTLGFRGEALPSIASVSEVELT-TGTGSGPGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  + S    A   GT + V +LFF  PARL ++K+   E     DV+ R+A+A+
Sbjct: 122 KLVLQGGALVSRERAAGRKGTDITVSNLFFNTPARLKYMKTIHTELGHAADVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF           +   + +G+    ++ + G +     + +  +S + T++GY   
Sbjct: 182 PDVSFRLRHQGK---TLLATNGSGDVRHVLAAIYGAETARQMIPIEAESLDFTVRGYISP 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR V+   ++  I   Y   +P+GRYP+V L +E+DP  VDVNV
Sbjct: 239 PDVTRASRNYISLVVNGRYVRSVPLMKAIEAGYHTLLPIGRYPIVFLSIEMDPVLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-SSFHQDNAPKTHLPKY 358
           HPAK  +RF     +   +  +I++A  ++ +  S     KM      Q     TH  + 
Sbjct: 299 HPAKLEVRFSKEAELNELVTDAIRQAFRERTLIPSVSADSKMAKPKAEQAAWTFTHRVRE 358

Query: 359 ATSLTN-----------------------------------TQEKLFLQENRLSTNDLLP 383
            + L++                                     E     E +    +   
Sbjct: 359 PSVLSSDIGGGEDATAPLAPLTGDAPAERPSAAVQTDECGIPDEHGPAFERKQEEEEGEE 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
              P    D    +++ A          Q+H  YI+++   GL ++DQHAA ER+ +E  
Sbjct: 419 RCSPRLPTDGQAEDKAAADRLPPLYPIGQLHGTYILAENEHGLYMIDQHAAQERINYEYF 478

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           R+         Q LL P + +    E   I    ++L R G+  E FGP A  +R  P  
Sbjct: 479 REKLGEATKEVQELLVPLMFEYPADEYERIAACRDELARCGVFLEPFGPRAFLVRSHPTW 538

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
             K    +++ ++I++ + + T   ++   E     M+C  +I++ + ++  E+  LL  
Sbjct: 539 FPKGREKEIIEEMIEQALAAKTVD-IKQLREQAAILMSCKRAIKANQHLRQDELFALLEA 597

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  +   C HGRP  +     +IEKLF R
Sbjct: 598 LRQTTDPFTCPHGRPIIVHFSTYEIEKLFKR 628


>gi|330831909|ref|YP_004400734.1| DNA mismatch repair protein MutL [Streptococcus suis ST3]
 gi|329306132|gb|AEB80548.1| DNA mismatch repair protein MutL [Streptococcus suis ST3]
          Length = 645

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 176/632 (27%), Positives = 302/632 (47%), Gaps = 44/632 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAG  IERP+  +KEL+ENS+DA +S++E  +   G    QITDNG G
Sbjct: 4   IIELPEILANQIAAGGGIERPASVVKELVENSIDAGASQIEISVEEAGLKMIQITDNGEG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI    D   I T GFRGEALPSI +VSH+ + +    +  G  
Sbjct: 64  IAPDEVALALRRHATSKIKNQSDLFRIRTLGFRGEALPSIASVSHMIIETATADSAHGLH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G  I    PV+   GT + V DLF+  PARL +++S+Q E + I DV+ R+++A+P
Sbjct: 124 LEAKGGVIEKEEPVSRPVGTQITVSDLFYNTPARLKYVRSQQAELSHIVDVVNRLSLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F          ++   +  G   + IS + G       VE+  +  +  + GY  +P
Sbjct: 184 EMAFALVNEGR---ELIRTAGTGKLRQAISGIYGIASAKKMVEIEAEDLDFQISGYVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ +EIDP   DVNVH
Sbjct: 241 ELTRANRNYISIFINGRYIKNFLLNRAILEGYGSKLMVGRFPLAVISIEIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   I ++I +A+ ++ +   ++ +    S+  +  A +  LP    
Sbjct: 301 PTKQEVRISKEKELMTLIREAISQALKEQDLIPDALENLAQSSTRPKVKAEQGTLPLREP 360

Query: 361 -----------------------------------SLTNTQEKLFLQENRLSTNDLLPSD 385
                                                 N    +   E +   ++     
Sbjct: 361 KIYYDTIKQDFFLKPDVVAEDVKPLEEDRQEIVESPAENKPTSVQFAERQSVESEDQEHP 420

Query: 386 DPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           + +  E     D ++    + +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E 
Sbjct: 421 NLSAKELAKLADKLDREATSTFPELEYFGQMHGTYLFAQGKTGLYIIDQHAAQERVKYEY 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+       ++Q LL P I +  + +   ++   + L ++G+  E +G N   +RE P 
Sbjct: 481 YREKIGQVDNSAQQLLVPYIFEFPQNDALDLVHKMDALRQVGVNLEEYGSNQFILREHPI 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            + ++ I   + ++ D ++ +    +++     +   M+C  SI++   +       LLR
Sbjct: 541 WMKEEEIESGIYEMCDMLLLTDQV-SIKQYRAELAIMMSCKRSIKANHALDDYSARDLLR 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++    N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLSYCQNPYNCPHGRPVLVHFSKSDMEKMFRR 631


>gi|255530395|ref|YP_003090767.1| DNA mismatch repair protein MutL [Pedobacter heparinus DSM 2366]
 gi|255343379|gb|ACU02705.1| DNA mismatch repair protein MutL [Pedobacter heparinus DSM 2366]
          Length = 623

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 171/622 (27%), Positives = 304/622 (48%), Gaps = 37/622 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KEL+EN++DA +++++ ++   GK+  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVVQRPASAVKELLENAIDAGANKIQLLVKDAGKALIQVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M  +RH TSK+   +D   I T GFRGEA+ SI A++ + + +R      G  
Sbjct: 65  MSVTDARMCFERHATSKVRKAEDLFAIRTMGFRGEAMASIAAIAQVEMKTRKHDEELGTV 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G       PVA + GT + +++LF+  PAR NFLKS   E   I D  +R+++A+P
Sbjct: 125 IEIEGSVFVKQEPVACSEGTSISIKNLFYNTPARRNFLKSNPAEMRHIIDEFQRISLAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+        Y++          +RI  + G ++    + + E+++ I L+GY G P
Sbjct: 185 SIAFSLHHDGVEIYRLPA----SVLKQRIVHLFGNNYNERLIPVEEETSIINLKGYIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++D ++   +  AY E +    +P+ VL ++IDP  +DVNVH
Sbjct: 241 EFAKKTRGEQFFFVNNRFIKDAYLNHAVNKAYEELLADDHFPLYVLFIDIDPANIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I++ +   I   +  +I++++ +  IS +    ++   S    +     +   + 
Sbjct: 301 PTKTEIKYLDEKSIYAILHSAIKRSLGRFNISPTIDFDQETGFSNMITHKAPEEIVPPSI 360

Query: 361 SLTNTQEKLFLQENRLSTN----------------------------DLLPSDDPTYSED 392
           S           +   S +                            ++   +  T S  
Sbjct: 361 SFNPDFNPFAEDKPSPSRDAAYASFPKSYGGGGGNIKPSTKNWGSLYEIANHNPETQSAL 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           + P + +      +     Q+H  YIISQ   GL+++DQ AAHER+++E+        K 
Sbjct: 421 DLPADPAGHQFSPVQKQLMQLHNRYIISQIKSGLMLIDQQAAHERILYERFTLHLEDRKG 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI--P 510
            SQ  L P+ + L   +  L     ED+  LG +   FG N + I  IP  L   NI   
Sbjct: 481 ASQQSLFPQTVTLSPNDYELAKSLLEDIKSLGFEVREFGKNTLVIEGIPVDLGGGNINET 540

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           QL   +I+   +S     L D+ + +  +MA   +I++G  +   EMN L+ ++      
Sbjct: 541 QLFEHLIEGFKNSQQELKL-DKRDALARSMARNSAIKNGTVLGQEEMNTLIEQLFACKTP 599

Query: 571 SQCNHGRPTFIKLKLSDIEKLF 592
           +    G+P    + L++++K F
Sbjct: 600 NFSISGKPVIQTIGLAELDKKF 621


>gi|313677400|ref|YP_004055396.1| DNA mismatch repair protein mutl [Marivirga tractuosa DSM 4126]
 gi|312944098|gb|ADR23288.1| DNA mismatch repair protein MutL [Marivirga tractuosa DSM 4126]
          Length = 615

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 314/615 (51%), Gaps = 30/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I NQIAAGE+++RP+  +KEL+ENS+DA SS+++ V+   GK   Q+ D+G G
Sbjct: 5   IQLLPDAIANQIAAGEVVQRPASVVKELLENSIDAGSSKIKLVVKDAGKQLIQVIDDGAG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M  +RH TSKI  SDD   + T GFRGEA+ SI AV+ + L ++      G  
Sbjct: 65  MSETDARMCFERHATSKIRKSDDLFALKTMGFRGEAMASIAAVAQVELKTKTADAELGVL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I   +I +        GT + V++LF+ +PAR NFLKS  VE   I D   R+A+A P
Sbjct: 125 LEIEASEIKNQSHTTHTGGTTISVKNLFYNVPARRNFLKSNPVEMRHIIDEFHRVALANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+      + Y++N     G   +RI  + G+++    V   E ++++ + GY G P
Sbjct: 185 QVAFSLHQNDMDVYQLNA----GKLSQRIVGLFGKNYQEQLVACEETTDQLKIYGYIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++  ++   +   +   +    +P  VL LEIDP+++DVNVH
Sbjct: 241 EFAKKTRGEQFFFVNNRYIKSGYLHHAVVNGFEGLLAKEAHPFYVLCLEIDPKRIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN----------- 349
           P K+ I+F +  ++   +  +I++A+    ++ +      +  SF+              
Sbjct: 301 PTKTEIKFDDERMVYGILAAAIRQALGAHNVAPALDFDSDVNFSFNAPRRNQVDDFSRKT 360

Query: 350 -------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
                   PK +  ++   L+N QE            D+      + +  +   EE+E+ 
Sbjct: 361 TNYQKFKQPKDNDGEWDKILSNFQELSQKISEEEENEDIADESQQSMTFGSAINEENESK 420

Query: 403 HYQLGIA-----CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
             Q           QIHQ YI +Q   GL++VDQ AAHER++FEK  +   ++  +SQ  
Sbjct: 421 VPQSERVEAKSSIFQIHQKYIATQVKSGLMLVDQQAAHERILFEKFNRHLQNSDGSSQQF 480

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L PE + L   + AL+M+ +E+L  LG     FG + + I   P  L+  ++  +   +I
Sbjct: 481 LFPEQVQLSAPDYALVMDMEEELKALGFVISSFGKDTVVINGAPTELTDTSVKSVFEGLI 540

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D+   +    ++  + ENI  ++A   +IR+G K+ + EMN L+ ++    N +    G 
Sbjct: 541 DQFKHNKNVLSV-SKNENIARSLAKRSAIRAGHKLNAEEMNALIDKLFACQNPNYAPSGN 599

Query: 578 PTFIKLKLSDIEKLF 592
            TFI   L+ I   F
Sbjct: 600 STFIIFDLNKIASFF 614


>gi|293603562|ref|ZP_06685983.1| DNA mismatch repair protein MutL [Achromobacter piechaudii ATCC
           43553]
 gi|292817998|gb|EFF77058.1| DNA mismatch repair protein MutL [Achromobacter piechaudii ATCC
           43553]
          Length = 656

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 194/656 (29%), Positives = 324/656 (49%), Gaps = 70/656 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+  +KE++EN++DA    +E  + GGG     +TD+G 
Sbjct: 6   SILALPDLLISQIAAGEVIERPASVLKEILENAIDAGGRAIEVRLEGGGIRRIAVTDDGG 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI    +  ++ + GFRGEAL SI +V+ +T++SR        
Sbjct: 66  GIPPDELPLALARHATSKIRSLNELESVASMGFRGEALASIASVAQVTIISRTRDGEHAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P +  PGT V+VR LF  +PAR  FL+SE  E     D + R+A+A+
Sbjct: 126 QIDAGSMQV---SPASGPPGTTVDVRQLFDAVPARRKFLRSEATEFGHCVDAMERIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F        + +           +RI  V+G +F  + + L+     ++L G    
Sbjct: 183 PQIAFRLFHHDRAQRQWLPAEPP----QRIRDVLGAEFAEHGLLLSHSVGTVSLAGMITR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R AYA+ +   R P  VL L+IDP  VDVNV
Sbjct: 239 PTAARARADRQYLYVNGRYVRDRTVSHALRAAYADVLHGDRQPAYVLFLDIDPAAVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI----------------- 342
           HPAK  +RFR+   +  F+  ++ + + + G S++   +++                   
Sbjct: 299 HPAKHEVRFRDSGAVHRFVSHAVGQTLAQTGGSSAVAPAQQEAAVQADAGTGGQANADED 358

Query: 343 --------------------------------SSFHQDNAPKTHLPKYATSLTNTQ--EK 368
                                             +   NA     P       +TQ   +
Sbjct: 359 GDFETVARAPAATHAGASLSNGGAAPAADAARPGYSGQNAAYGLRPSPPAQRAHTQVPFR 418

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
           L  +   +   D      P   +    V           +   + H   +      G+ I
Sbjct: 419 LHAEPAGIPAADWQSLYRPLNDDTATKVTPVSEPRPAPTLPADEEHPLGMALAQLHGIYI 478

Query: 429 VDQHAA----------HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + Q+            HER+++E+++Q  ++  +  Q LL P +    E + ALI E +E
Sbjct: 479 LAQNRRGMVLVDMHAAHERVVYEQLKQALDTRSLPRQDLLVPVVFHAQEKDVALIEEFEE 538

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG +    GP +IA+R +PAIL++ +I  L R ++ ++     +  L ++   +L+
Sbjct: 539 QLGELGFEMRPSGPTSIAVRSVPAILARGDIETLARAVLRDLGAVGVSRLLTEQRNELLS 598

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC+GS+R+ R++   EMN LLR+ME    + QCNHGRPT+++  +SD++KLF R
Sbjct: 599 TMACHGSVRANRRLTIEEMNGLLRQMEATERADQCNHGRPTWVQWSVSDLDKLFLR 654


>gi|296161798|ref|ZP_06844600.1| DNA mismatch repair protein MutL [Burkholderia sp. Ch1-1]
 gi|295887962|gb|EFG67778.1| DNA mismatch repair protein MutL [Burkholderia sp. Ch1-1]
          Length = 682

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 180/658 (27%), Positives = 300/658 (45%), Gaps = 73/658 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGAQSLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +T+ SR        +
Sbjct: 90  IPENELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVAQMTITSRTADAAHAVR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 150 V---DAQTGVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E +  + + G  G+P
Sbjct: 207 DVAISVLHNGKAVEHWNASEPP----VRVAKILGDTFATAHLPLDESAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGERYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA- 359
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +                 
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLEPSVGGPASFGATPL 382

Query: 360 ---------------------------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE- 391
                                       S +      ++++ R++   L  +    + + 
Sbjct: 383 GGAGVGGVGFGAGNGAGGLGGASGGGFGSSSQQPGNTWMRQARMTQGTLPVAQPLAFYDA 442

Query: 392 -----------------DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH-- 432
                                   +EA       A       +   +   G  +   H  
Sbjct: 443 LFGRKETNAGTAEGATLFEARDSAAEAPSPYNASAPYPAPAFHAADEQPLGFALGQIHGI 502

Query: 433 -----------AAHERLIFEKMRQDFNSTKI-----TSQTLLTPEIIDLLEGECALIMEH 476
                              E++  +     +       Q LL P+ +     E   + E 
Sbjct: 503 YVLAQNAHGLVIVDMHAAHERILYEQFKNALADRTIAVQPLLIPQSMQADPIEIGTVEEE 562

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L  LG       P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +
Sbjct: 563 RDTLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLSDLHAFGGSRVLTERQHEL 622

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L LSD+++LF R
Sbjct: 623 LGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLSDLDRLFMR 680


>gi|153657|gb|AAA88600.1| mismatch repair protein [Streptococcus pneumoniae]
          Length = 649

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 181/636 (28%), Positives = 311/636 (48%), Gaps = 48/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+   KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVCKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N   +R
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILR 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E P  ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      
Sbjct: 541 EHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSAR 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LL ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 600 QLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 635


>gi|51474047|ref|YP_067804.1| DNA mismatch repair protein [Rickettsia typhi str. Wilmington]
 gi|81826273|sp|Q68VN4|MUTL_RICTY RecName: Full=DNA mismatch repair protein mutL
 gi|51460359|gb|AAU04322.1| DNA mismatch repair protein MutL [Rickettsia typhi str. Wilmington]
          Length = 600

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/599 (38%), Positives = 369/599 (61%), Gaps = 6/599 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++D  S++++ ++   GK+   ++D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAVDGGSTKIDIILERAGKNLIIVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+++ DF NIHTFGFRGEALPSI A+S + + S+  + +   
Sbjct: 61  IGMTDKELEIAVERHTTSKLNESDFLNIHTFGFRGEALPSIAAISKMLITSKKREADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     +     N GT +E+RDLFF  PARL FLKS++ E     D+++++A+A+
Sbjct: 121 QIKLIGGNKQQITVSVHNEGTKIEIRDLFFATPARLKFLKSDRTELAASLDIVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           PK+SF       N  K+  Q+ +   N  +RI  VIG+ FI NA  +N K+ + ++ GYT
Sbjct: 181 PKISFNLIHNSKNLLKLKGQNKDFETNLKQRIIDVIGDVFIKNASYINFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT++R ++   ++FIN R ++DK +   +R AY + +   RY +  + L+IDP+ VDV
Sbjct: 241 SIPTYSRASSEDQFLFINNRPIKDKLLQVALRVAYQDYLARDRYALCAIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI-NKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK+ +RF +P  +RN +I++I+ A+ NK  ++ ++  + ++  +   +  P  +  
Sbjct: 301 NVHPAKAEVRFHDPNYVRNILIEAIKNALTNKSQVTVTTTDAIELFKNPLVNKQPPINKA 360

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-HYQLGIACAQIHQ 415
               S  +         N +     L SD            ++++   Y+ GIA AQ+H 
Sbjct: 361 INVNSKASEYISFNFNRNTVCQKLTLQSDKIEQEVGKCIEHDNQSYKQYKFGIAKAQLHT 420

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE-GECALIM 474
            YIISQT D +VI+DQHA +ERL +EK++    + ++  Q LL PEI++L    +   + 
Sbjct: 421 TYIISQTEDSIVIIDQHAVYERLGYEKIKYCLKNGELVKQRLLIPEIVELSSGEKADYLY 480

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E+ + L +L +  E+FG  +I + E+P +L   N+ +L++D+ D + D S    L++ IE
Sbjct: 481 ENRDKLFKLSLTIEKFGEKSIIVTEVPNLLRDVNVQKLIQDLADHLSDFSKNIALKELIE 540

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           +++    C+ SIR+ RK+   EMN LLR+ME    S+QCNH RPT+I+LKL DIE+LF 
Sbjct: 541 HVIKIYICHYSIRAVRKLSVDEMNSLLRQMENMSFSAQCNHNRPTYIELKLKDIERLFR 599


>gi|110636441|ref|YP_676648.1| DNA mismatch repair protein [Cytophaga hutchinsonii ATCC 33406]
 gi|122967050|sp|Q11Z58|MUTL_CYTH3 RecName: Full=DNA mismatch repair protein mutL
 gi|110279122|gb|ABG57308.1| DNA mismatch repair protein MutL [Cytophaga hutchinsonii ATCC
           33406]
          Length = 610

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 177/611 (28%), Positives = 305/611 (49%), Gaps = 25/611 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + I NQIAAGE+++RP+  +KEL+ENS+DA S+ ++ ++   GK   Q+ DNG G
Sbjct: 5   IRLLPDNIANQIAAGEVVQRPASVVKELLENSVDAGSTNIQLIVKDAGKQLIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +  +RH TSKI   DD   I TFGFRGEA+ SI +V+ + + ++ P N  G  
Sbjct: 65  MSDGDARLCFERHATSKIRSADDLFAIRTFGFRGEAMASIASVAQVEMKTKLPGNELGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  I      A   GT + V++LF+ +PAR NFLKS  VE   I D   R+A+A+P
Sbjct: 125 IRIEGSAILVHEQTAHPQGTSISVKNLFYNVPARRNFLKSNSVEMRHIMDEFVRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+F       + +          +R   ++G  +    +   E+++ +++ GY G P
Sbjct: 185 EVAFSFYHNDLELFNVP----EETLSKRAVSLLGGSYREQLIPCKEETDFVSISGYIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+N R ++  ++   +  A+ E IP   +P  +L +EIDP  +DVNVH
Sbjct: 241 ESARKTRGDQYFFVNNRYIRSNYLHHAVMHAFEELIPTDAFPFYLLFIEIDPAHIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------KKMI 342
           P K+ I+F +   +   I   +++++    I  S                      ++  
Sbjct: 301 PTKTEIKFDDEKTVYAIIKACVKRSLGTHNIMPSLDFDFNVNVSGFTGMGLSDSSGRESN 360

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
           ++F   +   +   + +      +    L+ NR              +   D  + S+  
Sbjct: 361 TNFTPKSFSTSDSIQRSNQSNWERMYSGLENNREEVYQESIKMVSAINGTEDLKQLSKEQ 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            Y    +  Q+HQ YI++Q   G+++VDQ AAHER++FEK      +   +SQ  L P+ 
Sbjct: 421 LYTENTSTFQLHQKYIVTQVKSGVLLVDQQAAHERILFEKYIGMLQNRFGSSQQFLFPQT 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++L   + A+++E +ED+ +LG     F    I +  +P+ +   N   L   +I++   
Sbjct: 481 LELSAADFAMVVEMEEDIRKLGFVFNVFSNTTIVVNGVPSDVKSGNEKNLFEGLIEQFKQ 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
           + T   + DR EN+  ++A   +IR+G K+  +EMN ++ ++    + +    G  T + 
Sbjct: 541 NRTDLKI-DRQENLARSLAKRSAIRAGNKLSLMEMNSIIDQLFACKSPNYAPDGNLTVVM 599

Query: 583 LKLSDIEKLFG 593
           L +  I +LF 
Sbjct: 600 LDMDKIGRLFM 610


>gi|311748627|ref|ZP_07722412.1| DNA mismatch repair protein MutL [Algoriphagus sp. PR1]
 gi|126577153|gb|EAZ81401.1| DNA mismatch repair protein MutL [Algoriphagus sp. PR1]
          Length = 616

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 188/616 (30%), Positives = 322/616 (52%), Gaps = 30/616 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I NQIAAGE+++RP+ A+KEL+ENS+D+ +++++ V+   GK   Q+ DNG G
Sbjct: 5   IQLLPDAIANQIAAGEVVQRPASALKELLENSIDSGATKIQVVVKDAGKQLIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI    D  +I TFGFRGEAL SI AV+ + L ++P   + G  
Sbjct: 65  MSPTDARMSFERHATSKIRSSKDLFSIRTFGFRGEALASIAAVAQVELKTKPANADLGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I +  P+A   GT V +++LFF +PAR NFLKS  VE   + D  +R+A++YP
Sbjct: 125 IQIEGSEIKNQEPIAATEGTSVCMKNLFFNVPARRNFLKSNPVEMRHLVDEFQRVALSYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+        + +      G   +RI  + G+++    V   E +  I ++GY G P
Sbjct: 185 EISFSLYQQDLEMFNLLP----GKLSQRIVGLFGKNYQGQLVPCEELTPHINIKGYIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    + + F+N R ++  ++   +  A+   I   ++P  VL LEIDP  +D+NVH
Sbjct: 241 ENAKKTRGEQFFFVNNRYIKSSYLNHAVSNAFEGLIQSDQHPFYVLFLEIDPSHIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT------- 353
           P K+ I+F +   +   I  ++++A+    +  S   S  +  + + D  P+        
Sbjct: 301 PTKTEIKFDDERTVYAVIRSAVKQALGAHHVVPSLDFSFDVNYTENWDKNPEKKEQVDRE 360

Query: 354 ------HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE---DNDPVEESEATHY 404
                 + P++  S  +  EKLF       T +    ++    E       V   E+  +
Sbjct: 361 YSYKSYNTPEFKKSSASGWEKLFEGNTPQKTQEQPRDENEEEPEVLTFPSRVNPEESQDF 420

Query: 405 QLGIAC-------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
              I+         Q+  +YI++Q + G++I+DQ  AHER+++E+  +  NS +  SQ  
Sbjct: 421 FPKISVEESTGTTFQVELSYIVAQLSTGMLILDQQIAHERILYERYTKQLNSAQGPSQQC 480

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P  + L   + AL+M+   +LH LG     FG + I I+ +PA +  K+   L   ++
Sbjct: 481 LFPPTVVLSASDFALVMDILPELHSLGFMVSEFGKDTIIIQGVPADIQPKSEKDLFESLL 540

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           ++  +     ++ D+ EN+  ++A   S++ G+K+   EM  L+ ++    N +    G 
Sbjct: 541 EQFKNFKNELSI-DKRENLARSLARKSSLKRGQKLTPQEMETLVGQLFACQNPNYGLSGN 599

Query: 578 PTFIKLKLSDIEKLFG 593
            TF+KL LS I   FG
Sbjct: 600 KTFVKLDLSSIHSFFG 615


>gi|295110016|emb|CBL23969.1| DNA mismatch repair protein MutL [Ruminococcus obeum A2-162]
          Length = 674

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 184/673 (27%), Positives = 310/673 (46%), Gaps = 87/673 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +  I++IAAGE++ERPS  +KEL+EN++DA ++ V   I  GGK   +ITDNG 
Sbjct: 7   KIAVLDQNTIDKIAAGEVVERPSSVVKELVENAIDAGATAVTVEITDGGKKLIRITDNGS 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM SE+IP+A  RH TSKI   +D  +I + GFRGEAL SI AVS + L+++ P + +G+
Sbjct: 67  GMESEQIPLAFLRHATSKIEKVEDLEHIASLGFRGEALSSIAAVSQVELITKTPSDISGS 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G K  ++  +    GT   VR+LF+  PAR  FLKS+  E N I  ++ ++A+++
Sbjct: 127 RYVIEGGKEIALEELGAPEGTTFLVRNLFYNTPARSKFLKSDMTEANYIHTLMEQLALSH 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF +   K  +      S N +  + I  V G +     +++N +++ + ++G+ G 
Sbjct: 187 PEISFKYIQNKQVKLH---TSGNYSVKDVIYSVYGREIAKALLDVNYENSFMKVEGFVGK 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RGN +    +INGR V++  I   I  AY   +   ++P V L +E++   +DVNV
Sbjct: 244 PEIARGNRSFENYYINGRYVKNNIITKAIENAYRGFLMQHKFPFVSLRMEMEGNDLDVNV 303

Query: 300 H----------------------------------------PAKSYIRFRNPTIIRNFII 319
           H                                        PAK+         I    +
Sbjct: 304 HPAKREVRFAREQEVYDAVYDMVRSALTRKEMIPKVSVDSTPAKTET---KEEKITRAAV 360

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQ------------------------DNAPKTHL 355
               +   ++ +  ++V   ++ +S +                         +   +   
Sbjct: 361 PEPFETKRREEMYPNTVRKPEVQASLNPKPEVRDGSNARTEIRKPFSQGTQSETIVREPA 420

Query: 356 PKYATSLTNTQEKLF---LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG----- 407
            +Y  + +  +E++F   L+EN+    +   ++     E        +            
Sbjct: 421 AEYRPAFSEAEEEMFSGTLRENQKLDEEKKQAELKLTEEPEKKQAPPQQLELFEEKLLAP 480

Query: 408 ------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
                     QI   Y + Q  D   I+DQHAAHE++ +E+M + F    I SQ L  P 
Sbjct: 481 ESRSRIRVVGQIFDTYWLVQFEDNFYIIDQHAAHEKVYYERMVKQFREHSIDSQYLSPPM 540

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I+ L   E  ++  + +   + G + E FG     I  +P+ L       L  +++D + 
Sbjct: 541 IVTLSMQEEEVLNSNKDYFEQFGFEIENFGGREYRISAVPSNLYGLTEEDLFLEMLDNLS 600

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
            +++   L D   + LATMAC  +++    M   E  +L+ E+    N   C HGRPT I
Sbjct: 601 GNNSRDAL-DIFASKLATMACKAAVKGNHAMSFEEAEKLIDELLTLDNPYHCPHGRPTII 659

Query: 582 KLKLSDIEKLFGR 594
            +  +++EK F R
Sbjct: 660 AMTRTELEKKFKR 672


>gi|110801747|ref|YP_698494.1| DNA mismatch repair protein [Clostridium perfringens SM101]
 gi|123341838|sp|Q0STR3|MUTL_CLOPS RecName: Full=DNA mismatch repair protein mutL
 gi|110682248|gb|ABG85618.1| DNA mismatch repair protein MutL [Clostridium perfringens SM101]
          Length = 674

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 182/674 (27%), Positives = 314/674 (46%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GVHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARVDFKSKTEDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVR+LFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELIISGGEKESLTDCSMNRGTQIEVRNLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNPT----IIRNFIIQSIQKAINKKGIST---------------------- 333
           HP KS I+F++      ++ + +  ++++ +                             
Sbjct: 300 HPTKSEIKFKDERFIFKLVFDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDKE 359

Query: 334 ---------------SSVLSKKMISSFHQDN-----------------APKTHLPKYATS 361
                          S    K+ I S++                      +    K+  S
Sbjct: 360 ISTLEKLKENINYKVSDDKRKEEIYSYNPSKDYEAKTEVNIPVDFLSKENQEESSKFNNS 419

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL--------------- 406
           L N   K    +  +S + +L  ++       +  +  E++ Y+                
Sbjct: 420 LENNDFKEVSAKREISYDPILIKNELKDKVSENTYDSLESSDYKCNKNEYGNSLEERIYR 479

Query: 407 ------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                      Q ++ YI+++    L ++DQHAAHE+++FEK   D    K+  Q L+ P
Sbjct: 480 EAKFPKLKVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIP 539

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            ++ L   +     E+ E   + G K   FG N+I I E+P  L K N  +L+  +I+ +
Sbjct: 540 LVVTLPTEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEVPYFLDKLNPTELIISMINNL 599

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
               T  T++ +   I A+M+C  ++++   +  +EM  L+ ++    +   C HGRPT 
Sbjct: 600 KKMGTGETVEVKYNKI-ASMSCRAAVKANDVLSILEMENLIEDLRYINDPFHCPHGRPTI 658

Query: 581 IKLKLSDIEKLFGR 594
           IK    +++K F R
Sbjct: 659 IKFTSYELDKKFKR 672


>gi|312892181|ref|ZP_07751678.1| DNA mismatch repair protein MutL [Mucilaginibacter paludis DSM
           18603]
 gi|311295311|gb|EFQ72483.1| DNA mismatch repair protein MutL [Mucilaginibacter paludis DSM
           18603]
          Length = 618

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 176/619 (28%), Positives = 308/619 (49%), Gaps = 34/619 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KEL+EN++DA + +++ ++   GKS  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVVQRPASAVKELVENAIDAGADKIQLILKDAGKSLIQVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M  +RH TSKI   +D   I T GFRGEA+ SI A++ + L +R  ++  G  
Sbjct: 65  MSLTDARMCFERHATSKIRKAEDLFAIRTMGFRGEAMASIAAIAQVELKTRRFEDELGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++      + N GT + +++LF+ IPAR NFLK   VE   I D  +R+A+A P
Sbjct: 125 IEIEGSQVIKQEACSCNAGTSICIKNLFYNIPARRNFLKGNPVEMRHIIDEFQRVALANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ FT        Y +       +  +RI  ++G  +    V + E ++ I L+GY G P
Sbjct: 185 QIFFTMHHDGQEVYHLPA----ASLKQRIIHLLGNQYNQRLVPVEEDTSIINLRGYVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F R    + + F+N R ++D ++   + TA+ E +P   YP+ VL ++IDP ++D+NVH
Sbjct: 241 EFARKTRGEQFFFVNNRFIKDAYLNHAVMTAFEELLPEESYPLYVLFIDIDPSKIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI------------------ 342
           P K+ I++++   I   I  ++++++ +  I+ +    ++                    
Sbjct: 301 PTKTEIKYQDEKSIYAIIRSAVKRSLGRYNITPTIDFDQENSIEHLITAKPFEEIVAPSI 360

Query: 343 ---SSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN-----RLSTNDLLPSDDPTYSEDND 394
                F+     KT  P  A       +K  + +N     ++S  D              
Sbjct: 361 TFNPDFNPFAPEKTARPDPAFRNYGDYQKSAIPQNWDTLYQISQRDTAQQQQMDIDRQKV 420

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
            + E E           QIH  +I+SQ   G ++V+Q AAHER+++E+  Q   +    S
Sbjct: 421 EINE-EQISKSSERQLFQIHNRFILSQIKSGFMLVNQQAAHERVLYERFLQQLENHSGVS 479

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q  L P+ I     +  L+ E   D+  LG     FG N + +  IPA L   N   LL 
Sbjct: 480 QQTLFPQSITFNAADFELLRELLPDVRALGFDVREFGKNTVVVEGIPAELHNANEHALLE 539

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            +++   ++     L D+ +N+  ++A   ++++G ++   EMN L+ ++      +   
Sbjct: 540 HLLEGFKNNQAVLKL-DKRDNLARSLARNAALKAGTRLSLEEMNILIDQLFACQMPNISL 598

Query: 575 HGRPTFIKLKLSDIEKLFG 593
            G+P  I   L+++ + F 
Sbjct: 599 SGKPIIITFTLTELLEKFE 617


>gi|288556898|ref|YP_003428833.1| DNA mismatch repair protein [Bacillus pseudofirmus OF4]
 gi|288548058|gb|ADC51941.1| DNA mismatch repair protein [Bacillus pseudofirmus OF4]
          Length = 658

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 186/659 (28%), Positives = 314/659 (47%), Gaps = 71/659 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL   + N+IAAGE++ERP+  +KEL+EN+LDA S+ +   +  GG S  +I DNG 
Sbjct: 3   QIVKLDAFLSNKIAAGEVVERPASIVKELLENALDAHSTNILIEMEEGGMSSIRILDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A  RH TSKI    D   I T GFRGEALPSI +VSHLT+ +       G 
Sbjct: 63  GIQADDVETAFYRHATSKIKTDRDLFQIRTLGFRGEALPSIASVSHLTMRTCT-GEGPGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  I+S  P     GT V V++LF+  PARL +LK+   E   ++DV+ R+A+A+
Sbjct: 122 ELTLEGGHITSRTPSKTRKGTEVIVQNLFYNTPARLKYLKTVHTEAGHVSDVVNRLALAH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +         K    + N +  + I+ + G +     V ++  S + +++GY   
Sbjct: 182 PNVAISLYHNGKEMLK---TTGNKDVRQVIASIYGRNVAKEMVAVSGTSLDYSIEGYIAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     +FINGR +++  +   ++  +   +P+GRYPVVVL +E+DP  +DVNV
Sbjct: 239 PEVTRASRQYMSLFINGRYIRNFHLARAVQEGFHTLLPIGRYPVVVLSIEMDPTLIDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---------------SSVLSKKMISS 344
           HP+K  +R      +   I  SIQ A NK+ +                  ++  +K  S 
Sbjct: 299 HPSKLEVRLSKEDELAKLITSSIQSAFNKQTLIPEIKHTTEKPKQIHYQETLPFEKATSD 358

Query: 345 FHQDNAPKTHLPKYATSLTNTQ------------------------------------EK 368
                  ++ L +   S   T+                                    E+
Sbjct: 359 TDSSLFDQSLLNQVNNSGAQTKGNHAKDPLPSIVKEAGTIEKDGNGSKFFDKAEGSKVEE 418

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN------------ 416
              +++++  ++L  +   +         E +           ++H              
Sbjct: 419 DKFEKSKVKEDNLEKNQVDSLEMPETHKAEGDFASSVHEQQTNELHDRVPVMYPVGQMHG 478

Query: 417 -YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI++Q  +G+ ++DQHAA ER+ +E  R+        +Q LL P  I+    E  +I +
Sbjct: 479 TYIVAQNENGMYLIDQHAAQERIKYEYYREKVGEVPRETQELLVPMTIECTNQEAIIIDQ 538

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           H +DL ++G+  E FG     +R  P  L K    + +R+IID ++ ++    ++   E+
Sbjct: 539 HLDDLKQVGVFLEEFGSKTYIVRSHPVWLPKGLEEETIREIIDHLLTTAKID-IKRLRED 597

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               M+C  SI++ R ++  EM  LL  + K+ +   C HGRP  I     ++EK+F R
Sbjct: 598 AAILMSCKASIKANRHLRQDEMFALLESLRKSSDPFTCPHGRPILIHFSSYELEKMFKR 656


>gi|295696239|ref|YP_003589477.1| DNA mismatch repair protein MutL [Bacillus tusciae DSM 2912]
 gi|295411841|gb|ADG06333.1| DNA mismatch repair protein MutL [Bacillus tusciae DSM 2912]
          Length = 661

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 181/658 (27%), Positives = 305/658 (46%), Gaps = 69/658 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L   + N+IAAGE++ERP+  +KELIENS+DA+++ +   +   G    ++ D+G G
Sbjct: 4   IHILDPGLSNRIAAGEVVERPASVVKELIENSIDAQATHIRVAVEEAGMKTIRVVDDGTG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  +A++RH TSKI+   D   I T GFRGEALPSI AVS L L +R  +++ G +
Sbjct: 64  MDREDAELALRRHATSKIASERDLFRIRTLGFRGEALPSIAAVSKLVLKTRRREDDAGTE 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G  I S   V M PGT + V +LFF  PARL ++KS   E   + D + R A+A+P
Sbjct: 124 IRAEGGTIVSTAEVGMAPGTDIFVEELFFNTPARLKYIKSLHTEGAHVVDAVTRAALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+FT S        +     +G     ++ + G D     + + E+  ++ + G  G+P
Sbjct: 184 EVAFTLSADGRP---VATTPGDGRLLHAVAALYGRDLAEKCIPVEERGLDLRVWGLAGLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R        F+NGR V++  +   +   YA  +P+ R PVV L LE+DP  VD NVH
Sbjct: 241 EIHRAGRGHVMFFVNGRPVRNPALTRAVLDVYAGRLPIHRNPVVFLHLELDPGLVDPNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---------------------------------- 326
           PAK  +RF     +   + +++ + +                                  
Sbjct: 301 PAKLDVRFSEERDVAGAVERALGRVLDRARAIPGLHSPTEGPREGRNPPPQGPDAAAGDA 360

Query: 327 -NKKGISTSSVLSKKMISSFHQDNAP----KTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
             K    + +   ++   +F  D+ P        P            +  +E   ++ + 
Sbjct: 361 AQKTQRGSRAQTLRESQMAFRWDSPPGGGRSPASPLARQRTLEALAPITAEEQPEASGER 420

Query: 382 LPSDDPTYSEDNDPVEESEATHYQL-------------------------GIACAQIHQN 416
                   S   +   +SE T                               A AQ+   
Sbjct: 421 GGETGSRSSLGPEVPVDSERTESNRTTEEAAAAVELEGVGTAVVRPRVPELRAVAQVLNL 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI+++  + L ++DQHAAHE++++E+  +     ++    LL P  ++L   E   +  H
Sbjct: 481 YIVAEAENSLFLIDQHAAHEKILYERFSRQITRREVGPMPLLVPITVELSVAEMHRLAPH 540

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + +   G+ AE FG NA+ +R +P I   ++I  L R+ + E ++       + R+E  
Sbjct: 541 LDMMQEYGLTAEPFGDNALVVRTVPDIWDGQDITALTREFLTECVERPMGQDPRKRLEQG 600

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + T AC G++++G+ +   EM  L  ++ +  N   C HGRPT ++    D+++ F R
Sbjct: 601 VITRACRGAVKAGQPLSMPEMQALCDQLRELDNPFSCPHGRPTILQWTRRDLDRQFQR 658


>gi|58039705|ref|YP_191669.1| DNA mismatch repair protein MutL [Gluconobacter oxydans 621H]
 gi|58002119|gb|AAW61013.1| DNA mismatch repair protein MutL [Gluconobacter oxydans 621H]
          Length = 619

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 221/612 (36%), Positives = 340/612 (55%), Gaps = 24/612 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+LS  +I+ IAAGE+IERP+ A+KEL+EN++DA ++R+   +  GG     +TDNG 
Sbjct: 11  TIRRLSGHVIDLIAAGEVIERPAAALKELVENAIDAGATRIVVALRAGGTDRIDVTDNGC 70

Query: 62  GMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GMT  E+ +AV+RHCTSK+ D+    I T GFRGEALPSIGA + L++ SR P+++T   
Sbjct: 71  GMTPGELELAVERHCTSKLQDERLVQIRTLGFRGEALPSIGASARLSITSRTPESDTAWC 130

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G  I+  +P +   GT + V DLFF  PAR  FLKS +VE++    V+RR+A++ P
Sbjct: 131 IRVDGGVITPPQPASGPVGTRIVVTDLFFATPARRKFLKSARVESSHAESVMRRLALSAP 190

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
             +          + +  QS        +     +   +  + L+E+   + L G+   P
Sbjct: 191 HCAMRVLLDDKVLFDLPEQSPIARVASVL-----DTTPDTLIPLDEQRGAVRLSGFACGP 245

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R   +  ++ +N R V D  + + IR AY   I  GR+PV+ L L +   ++DVNVH
Sbjct: 246 ARTRATGSGQFILVNNRPVTDPMLRTAIRVAYRPVIERGRFPVMALHLTVPLERLDVNVH 305

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGI----------STSSVLSKKMISSFHQDNA 350
           PAK+ +RF +   IR+ +I  + +A+               S  S++         +  A
Sbjct: 306 PAKTELRFADEAEIRSLVIGGLGRALGHGSNGGGGIHASFGSRPSIVYPPRPPEPREAPA 365

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD-DPTYSEDNDPVEESEATHYQLGIA 409
                    T        L      L+      +D     +       E+    + LG A
Sbjct: 366 SIPLQGSLPTGYAPRSSPLPGATPSLARPGFAETDPAFAPAARAPQQPEALDPAFPLGAA 425

Query: 410 CAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLE 467
            AQ+   YI++   DG LV+VDQHAAHERL  E++R+ + +   + SQ LL PE++DL  
Sbjct: 426 IAQVFDTYILALAPDGDLVLVDQHAAHERLTHERLREQYANGGTLRSQALLLPEVVDLPR 485

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI-----ID 522
            E   +M   EDL +LGI  E FGP ++ +R +PA+L  ++I  LL+DI DE+     +D
Sbjct: 486 REAEALMARAEDLSKLGIDLESFGPGSVLLRSVPALLGAQDIQGLLKDIADELASDPDLD 545

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
           +++T +    ++ ILA MAC+GSIR+GR+++  EM+ LLREME  P ++ C+HGRPT++K
Sbjct: 546 AASTGSFSHHLDAILARMACHGSIRAGRRLKPEEMDALLREMELTPRANTCSHGRPTWLK 605

Query: 583 LKLSDIEKLFGR 594
           L   ++E+LFGR
Sbjct: 606 LTRRELERLFGR 617


>gi|330999347|ref|ZP_08323064.1| DNA mismatch repair protein [Parasutterella excrementihominis YIT
           11859]
 gi|329575205|gb|EGG56756.1| DNA mismatch repair protein [Parasutterella excrementihominis YIT
           11859]
          Length = 631

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 189/626 (30%), Positives = 332/626 (53%), Gaps = 43/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS+++I+QIAAGE++ERP+  +KEL+EN++DA +  VE  I GGG     ++DNG 
Sbjct: 14  KIQELSDQLISQIAAGEVVERPASVVKELVENAIDAGADSVEVRIEGGGIKRIVVSDNGC 73

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV+RH TSK+S  D+  ++ + GFRGEAL SI +VS + ++SR    +   
Sbjct: 74  GIPKDQLALAVKRHATSKVSNLDELESVSSLGFRGEALASIASVSDMKVISRVAGEDA-- 131

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                      +   + N GT +EV DLF+  PAR  FLKSE  E      VI R+A+AY
Sbjct: 132 ----FSIADGEISAASGNKGTRIEVADLFYKTPARRKFLKSEGTEAAHCQTVIERIALAY 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F F         +       +  ER+++++  DF +    L+ K+  + L G+  +
Sbjct: 188 PEVAFLFVANGKPIINLPA----SSIEERLTRLMPRDFRDAHRALDIKAPALRLYGWVCL 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A+  Y ++NGR V+DK +   +R AY + +     P   L L++DP +VDVNV
Sbjct: 244 PTAARSRADCQYFYVNGRFVRDKVLSHGVRMAYQDVLHGSSQPSYCLFLQMDPHKVDVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI--STSSVLSKKMISSFHQDNAPKTHLPK 357
           HP KS +R R+   +  FI  +++ A+ +  I   +S  +    + S  +D + +     
Sbjct: 304 HPTKSEVRMRDSQAVHQFIFHAVEDALARTTIVDPSSGEIMDTALPSSPRDASAQAPAEA 363

Query: 358 YATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDND--------------------- 394
                 N         + +R +T   L    P      +                     
Sbjct: 364 PVAPTVNPSSFRPAQPKPSRTNTEAYLDFSSPHPKSFQNSFPTTIAAMKVDPATLSANHA 423

Query: 395 ---PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              P  E+      LG A  Q+   +II++ + G+V+VD HAAHER+++E++++ F+  K
Sbjct: 424 TPKPAAEAPKRPQPLGRAVGQVCGTFIIAENSAGMVLVDMHAAHERILYERLKKSFDERK 483

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK---KN 508
           +  Q +L P +  +   + A   +  E+L +LG++    GPN +++R +P ++     + 
Sbjct: 484 MPMQEMLIPLVFTVTPEQMATFEDAREELEQLGLELSAVGPNQLSLRSVPQLMINQISQA 543

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
            P ++R+++D+      +  + ++   +L+ MAC+ ++R  R +   EM+ +LR+ME+  
Sbjct: 544 GPTIVREVLDDFRQYGKSTAMTEKRNEVLSRMACHAAVRVNRILTIEEMDAILRQMEQTD 603

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +CNHGRPT+++L   +++  F R
Sbjct: 604 RADECNHGRPTWVQLSAKELDSFFMR 629


>gi|118581367|ref|YP_902617.1| DNA mismatch repair protein [Pelobacter propionicus DSM 2379]
 gi|166232100|sp|A1AT89|MUTL_PELPD RecName: Full=DNA mismatch repair protein mutL
 gi|118504077|gb|ABL00560.1| DNA mismatch repair protein MutL [Pelobacter propionicus DSM 2379]
          Length = 608

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 192/608 (31%), Positives = 314/608 (51%), Gaps = 19/608 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E I N+IAAGE++ERP+  IKELIENSLDA ++ +   IA GG+   +ITDNG 
Sbjct: 4   RIAILPEIITNKIAAGEVVERPASVIKELIENSLDAGATDISVEIAAGGRRLIRITDNGH 63

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  ++++RH TSKI  D     IHT GFRGEALPS+ +VS L L SR   +  G 
Sbjct: 64  GMSREDALLSLERHATSKIRSDNDLDGIHTLGFRGEALPSVASVSRLRLSSRETDSPEGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G K+  VR   M PGT++ V  +FF  PARL FL+S + E   + D + RMAI+ 
Sbjct: 124 EIIVEGGKVRDVRACGMAPGTVISVEQIFFNTPARLKFLRSAETEAGHVGDCLTRMAISR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+ S+   +  ++      G+   R+SQ +G+    +  EL+   + I + GY   
Sbjct: 184 PDVAFSCSSDGRDLLRVQ----RGDLLRRLSQALGKGTAASLHELHLSRDGIDISGYISS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   +  + +INGR ++DK I   I  AY   +  GRYPVV L +++ P +VDVNV
Sbjct: 240 PAACRSTTSAMFTYINGRFIRDKVIQHAIMQAYRGVMDRGRYPVVALFIQLPPAEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTSSVLSKKMISSFHQDNAPKTHL-- 355
           HP K  +RFR  +++ + +  ++++ + +        + +    + +     A +  +  
Sbjct: 300 HPTKHEVRFRRQSLVHDTLQSALEELLKRSPWLPRPQTPVQPAAVGAPSISQAYRERVAA 359

Query: 356 ---------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
                     K      +   +           + +   +                ++  
Sbjct: 360 AAQASLAMARKPDPPRFHETARPQPDPRHTPGTESVSVREAPTPFLPREPAADPQGYFSA 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q H  YI+ Q+ D LVI+DQHAA ER+ F+K+R  F++  + SQ LL PE ++L 
Sbjct: 420 LRIIGQFHDEYILCQSGDQLVIIDQHAASERVAFQKLRHQFDTDGVESQRLLFPETLELS 479

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             E         +L R+G + E FG N + +  IP +   ++   L+RD++ E+     +
Sbjct: 480 FSEADTARRFGNELARIGFELEPFGGNTVIVSAIPRLAIARDASGLIRDLLAELTQLGAS 539

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
               D  + +L+ +AC+  +R   +++  ++  LL  M+    ++ C HGRP    + L 
Sbjct: 540 SAFLDSRDALLSRIACHSVVRGVHRLEERQIRELLHGMDGTDFAASCPHGRPVSHVITLG 599

Query: 587 DIEKLFGR 594
           ++E++F R
Sbjct: 600 ELERIFKR 607


>gi|134299735|ref|YP_001113231.1| DNA mismatch repair protein [Desulfotomaculum reducens MI-1]
 gi|172044301|sp|A4J5Q3|MUTL_DESRM RecName: Full=DNA mismatch repair protein mutL
 gi|134052435|gb|ABO50406.1| DNA mismatch repair protein MutL [Desulfotomaculum reducens MI-1]
          Length = 640

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 185/642 (28%), Positives = 318/642 (49%), Gaps = 55/642 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E   N+IAAGE++ERP   +KEL+ENSLDA ++R+   +  GG +  ++ DNG+G
Sbjct: 4   ITILDEATANKIAAGEVVERPVSVVKELVENSLDAGANRISVELTQGGITGIKVVDNGYG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M +E++ +   RH TSKI  ++D ++I T GFRGEALPSI AVS +TL +R      G  
Sbjct: 64  MPAEDVQLCFLRHATSKIKRAEDLNSILTLGFRGEALPSIAAVSKVTLTTRTEDELAGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G  + +V P     GTI+E++DLFF  PAR  FLK+   ET+ ++D+I R+A+A P
Sbjct: 124 MQIEGGYMQNVVPTGCPVGTIIEIKDLFFNTPARRKFLKTANAETSQVSDLITRLAMARP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F   +       +      G+  +  + + G D + + +E+  +   +++ G    P
Sbjct: 184 DVRFELRSGNR---VLFSSPGTGSLKDTAAVIFGLDNVRSMLEIGYQGKLLSVAGLISKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +    FINGR ++  F+ S ++ AY   IP GR+P+ +L ++IDP QVDVNVH
Sbjct: 241 VLTRASRHYQNFFINGRYIRSGFLSSILQQAYDTLIPAGRFPIAILHIDIDPTQVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------SSVLSKKMISSFHQD 348
           P K  IR      I+  ++ ++  ++N     T            ++   +        D
Sbjct: 301 PTKMEIRMAREGEIQEELLAALSDSLNVPTAITGLWEIMPGRTKNTATDQRAENLEVKPD 360

Query: 349 NAPKTHLPKYA---------------TSLTNTQEKLFLQE-------------------- 373
           +  K   PK +                   + QE+L                        
Sbjct: 361 SKEKELQPKESQHPRLVACDLPSGKIMPPRHDQEQLHFSSRRIAPVRGKNSLLPDEGSSI 420

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
           NR     ++   +    E+ +  + +E   + + +   Q+   Y+++    GL I+DQHA
Sbjct: 421 NREEIPPVVDVKEQQLKENPNTYQPAETLGFPVLVPAGQVPPTYVLAHGEGGLYIIDQHA 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AHER+++EK         + +Q LL P  +++   E  LI++H  D + LG   E FG +
Sbjct: 481 AHERVLYEKYLYLL-GNYVEAQMLLEPLTLEIPHHEAQLIIKHIVDFNELGFILEHFGGD 539

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI-ENILATMACYGSIRSGRKM 552
              +R +P   +     ++  D++  + ++ +    ++ + +++ A MAC  +++SG+  
Sbjct: 540 TFLLRGVPTN-AITEPKEVFLDLLARLQENPSQKVEKNLVLDHLAAAMACRDAVKSGQHF 598

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++E   LL  + +      C HGRPT I++   +++K F R
Sbjct: 599 SAVETKALLDGLARCQKPYTCPHGRPTLIQISQEELKKRFKR 640


>gi|222151138|ref|YP_002560292.1| DNA mismatch repair protein MutL [Macrococcus caseolyticus
           JCSC5402]
 gi|254766171|sp|B9EBI5|MUTL_MACCJ RecName: Full=DNA mismatch repair protein mutL
 gi|222120261|dbj|BAH17596.1| DNA mismatch repair protein MutL [Macrococcus caseolyticus
           JCSC5402]
          Length = 633

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 181/635 (28%), Positives = 299/635 (47%), Gaps = 50/635 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L   I N+IAAGE+IERP   +KEL+EN++DA+S+ +   +   G S  ++TDNG G
Sbjct: 4   IKTLDSTISNKIAAGEVIERPQSVVKELVENAIDAKSTSITIEVEEAGLSKIKVTDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +RH TSKI +  D  +I + GFRGEAL SI +VS + + +     + G Q
Sbjct: 64  ILEEDLELMFRRHATSKIENEHDLFHIRSLGFRGEALASIASVSKVRVTTCH-DGSIGRQ 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +   +  +        GT + V  LF+  PARL ++KS   E   ITD+I R  I++P
Sbjct: 123 IDVIDGETVNRTLAQARQGTEITVESLFYNTPARLKYVKSLHTELGKITDIINRFVISFP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FT          +   + NG   E ++ V G     + VE+N ++ +  + G+   P
Sbjct: 183 YIKFTLVADGR---VLIASNGNGKMQEAMAVVYGMKIAQDLVEVNGRTGDYEVHGFIAKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N +   +FINGR +++  +   I + Y   +P+GRYP++ + + +DP  VDVNVH
Sbjct: 240 EHTRSNRHYMSLFINGRYIKNFMLTKAILSGYHTLLPVGRYPILAINIVMDPALVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---------DNAP 351
           P K  +R    + +   I + I++ I K+ +    V  KK++ +F Q         ++  
Sbjct: 300 PTKQEVRLSKESQLMELIERLIKEKIWKQNLIP-KVEKKKVLETFQQQKFEYDLLREHRD 358

Query: 352 KTHLPKYATSLTNTQ----------------EKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
           KT    Y+      Q                +++   E+   T   +          ++ 
Sbjct: 359 KTKQSDYSEQTAVNQIDEKFKEQHKTAQLDKQRVPDGESTQKTTGFISDSAAELDTTSEI 418

Query: 396 VEES----------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           + E                 E           Q+H  YII+Q  DG+ ++DQHAA ER+ 
Sbjct: 419 LPEKNESSDVIENISTDTSREKRKIPYMEIVGQVHGTYIIAQNEDGMFMIDQHAAQERIK 478

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +E  ++      +  Q+LL P  + L + E   + + +  L  +GI  E FG N   I +
Sbjct: 479 YEYFKKQIGDVGLEMQSLLIPITVTLSKDEAINLNKINILLKDIGIHLEHFGGNDYIIND 538

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           IP      N  + ++++ID  +       L    E     M+C  SI++   ++  +MN 
Sbjct: 539 IPVWFPD-NYEETVQELIDYALQHRQID-LNKFREETAIMMSCKKSIKANHYLRITDMNY 596

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL E+        C HGRP  I+    ++EKLF R
Sbjct: 597 LLEELAHTVEPYTCPHGRPIIIQFTTYELEKLFKR 631


>gi|168218089|ref|ZP_02643714.1| DNA mismatch repair protein MutL [Clostridium perfringens NCTC
           8239]
 gi|182379888|gb|EDT77367.1| DNA mismatch repair protein MutL [Clostridium perfringens NCTC
           8239]
          Length = 674

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 183/674 (27%), Positives = 309/674 (45%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GVHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARVDFKSKVSDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVRDLFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELVISGGEKESLTDCSMNRGTQIEVRDLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNP--------TIIRNFIIQSIQKAI------------------------- 326
           HP KS I+F++           +   + + ++                            
Sbjct: 300 HPTKSEIKFKDERFIFKVVFDAVHAAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDKE 359

Query: 327 ----------------------NKKGISTSSVLSKKMISSFHQDNAPKTHL---PKYATS 361
                                      + S     K   +   D   K +     K+  S
Sbjct: 360 ISTLEKLKENINYKVSEDRKKEEIYSYNPSKDYEAKTEVNIPVDFLSKENQDESSKFNNS 419

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL--------------- 406
           L N + K    +  +S + +L  ++       +  +  E + Y+                
Sbjct: 420 LENNEFKEVSAKREISYDPILIKNEIRDKVSENTYDSLERSDYKCNKNEYGNSLEETIYK 479

Query: 407 ------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                      Q ++ YI+++    L ++DQHAAHE+++FEK   D    K+  Q L+ P
Sbjct: 480 EAKFPKLKVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIP 539

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            ++ L   +     E+ E   + G K   FG N+I I E+P  L K N  +L+  +I+ +
Sbjct: 540 LVVTLPIEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEVPYFLDKLNPTELITSMINNL 599

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
               T  T++ +   I A+M+C  ++++   +  +EM  L+ ++    +   C HGRPT 
Sbjct: 600 KKMGTGETVEVKYNKI-ASMSCRAAVKANDVLSILEMENLIEDLRYINDPFHCPHGRPTI 658

Query: 581 IKLKLSDIEKLFGR 594
           IK    +++K F R
Sbjct: 659 IKFTSYELDKKFKR 672


>gi|332528775|ref|ZP_08404752.1| DNA mismatch repair protein MutL [Hylemonella gracilis ATCC 19624]
 gi|332041841|gb|EGI78190.1| DNA mismatch repair protein MutL [Hylemonella gracilis ATCC 19624]
          Length = 677

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 202/667 (30%), Positives = 341/667 (51%), Gaps = 77/667 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L +++I+QIAAGE++ERP+  ++EL++N+LDA ++++   +  GG     + D+G 
Sbjct: 12  PIRELPDELISQIAAGEVVERPASVVRELVDNALDAGANQITVRLLAGGVRLITVEDDGG 71

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+ +A++RH TSKI+   +  ++ T GFRGEAL +I +V+ LTL+SR     T  
Sbjct: 72  GIPPGELAIALKRHATSKIASLQELESVATMGFRGEALAAINSVAELTLLSRSADQATAF 131

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +I   +P A  PGT VEV++LFF+ PAR  FLK++  E     D +RR A+A 
Sbjct: 132 MLDGRTGEI---QPAARGPGTTVEVKELFFSTPARRKFLKTDATELAHCIDAVRRHALAR 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--------------FPERISQVIGEDFINNAVELN 225
           P+V F          +      +G               F +R++ V+G DFI  +V ++
Sbjct: 189 PEVGFAIWHEGKLVEQWRACGKDGTVTSDDADEAAGSRAFDQRLADVLGADFITASVAVD 248

Query: 226 EKSNE-----ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
            +  +     I ++G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   R
Sbjct: 249 YRGRDASGRAIRVRGRAGVPDTARSRADQQFSYVNGRYVRDKVLTHAARSAYEDVLHGQR 308

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ----------------- 323
            PV  L +EIDP +VDVNVHP K  +RFR+   +   +  +++                 
Sbjct: 309 QPVYALHIEIDPTRVDVNVHPTKIEVRFRDSREVHQAVRHALEDALAAPRAQAAVSGDIA 368

Query: 324 --KAINKKGISTSSVLSKKMISSFH------QDNAPKTHLPKYATSLTNTQE-------K 368
              A     +S  +    +    F       ++ AP+++   ++ +  +           
Sbjct: 369 PAYAQLSATLSPPAPAWTQPAMRFDASDTEAREAAPRSYGAPWSGARADAPRGHPIQDLA 428

Query: 369 LFLQENRLSTNDLLPSDDPT------------------YSEDNDPVEESEATHYQLGIAC 410
              Q + + T  +  +   T                     D+   E S+ + + LG A 
Sbjct: 429 ALWQPSTVRTTPIGDAQAMTNDVYSTGGTIGADAQASAVMRDSSTQEGSDGSDWPLGKAL 488

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           AQ+   YI+++   GLVIVD HAAHER+++E+++Q  +   +TSQ LL P        E 
Sbjct: 489 AQLQGVYILAENAQGLVIVDMHAAHERIVYERLKQQLDLHTLTSQPLLIPAPFAATPQEV 548

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS---TTY 527
           A    H + L+ LG++     P  +A+R +P+ L++ +  +L R ++ E+ +        
Sbjct: 549 ATAEAHADTLNSLGMEVSALSPKTLAVRAVPSTLAQGDPVELARGVLAELAELPHGEGAR 608

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            ++     IL TMAC+G++R+ R++   EMN LLR+ME+   S QCNHGRPT+ ++ L D
Sbjct: 609 VIERARNEILGTMACHGAVRAHRQLTLAEMNALLRDMERTERSDQCNHGRPTWRQVTLKD 668

Query: 588 IEKLFGR 594
           ++ LF R
Sbjct: 669 LDALFLR 675


>gi|255657967|ref|ZP_05403376.1| DNA mismatch repair protein MutL [Mitsuokella multacida DSM 20544]
 gi|260850168|gb|EEX70175.1| DNA mismatch repair protein MutL [Mitsuokella multacida DSM 20544]
          Length = 655

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 192/656 (29%), Positives = 308/656 (46%), Gaps = 68/656 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  IN+IAAGE++ERP+  IKELIEN++DA ++R+E  I  GG SF ++TDNG
Sbjct: 1   MTIHVLDDNTINKIAAGEVVERPASVIKELIENAMDAGATRIEVEIMAGGTSFMRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM++E+  +A+ RH TSKI +  D + I T GFRGEALP+I +VS  TL++R   ++ G
Sbjct: 61  RGMSAEDAHLAILRHATSKIREVGDLNTIGTLGFRGEALPTIASVSRFTLLTRREGDDLG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I+G +         N GT V+V DLFF  PAR  FLK+   E   I D I ++A++
Sbjct: 121 TRVTITGGREPDFIEAGCNIGTTVKVEDLFFNTPARKKFLKTNHTEGARINDFIVKLALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P + F F                GN  + I  + G+   ++ + L  +  +I + GY  
Sbjct: 181 RPDIEFHFINNNKMSVV---TPGTGNLYDTIQAIYGDKTADSLLGLTLEDEDIKISGYIT 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  + +       +N R +Q++ I   I  AY   IP   +P+ VL +E+  R +DVN
Sbjct: 238 KPSMLKSSRAWQTYIVNSRIIQNRAIAKAIDNAYKSLIPKSGFPLAVLCIEVPQRTIDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN----------------KKGISTSSVLSKKMI 342
           VHP KS ++F + + I   + +++  AI                 ++ ++   +      
Sbjct: 298 VHPQKSELKFEDESRIFKAVYKAVLDAIRPAGRGLGEVAAVVEKPEQHVTMEPMQFVPAT 357

Query: 343 SSFHQDNAPKTH------------------------LPKYATSL---TNTQEKLFLQ--- 372
               +   P+                           P  A+SL   ++TQE L  +   
Sbjct: 358 EPLAEPIIPQWPQAAAASPIAAQSKPKTIYEAVHRTAPSAASSLAGFSDTQESLRREREA 417

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                         E  ++     P      +   +  +     +    +   Q+   YI
Sbjct: 418 AVPLHDIHAAHPVLEGTVAETAAAPLSSAQETPCAEGEKGERLQYEGTVVPIGQVDLTYI 477

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I+Q   GL IVDQHAAHER++F+K      +  I SQ LL  +I+     E  L+  H E
Sbjct: 478 IAQDAKGLYIVDQHAAHERILFDKF--SAMAGDIPSQQLLVHQILTFDRKESELVEAHQE 535

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
               LG   E  G     + E+PA +       ++R+I+  ++D   T T ++  +  LA
Sbjct: 536 LFASLGFHMEMSGEREFRLIEVPADVPVSEAEDIIREILTNLMDMHET-TAKEIRQACLA 594

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T AC  +I++G ++   +M  +L  +        C HGRPT +K    ++ K+F R
Sbjct: 595 TTACRAAIKAGEELSFRQMQIILDALAHTDFPYTCPHGRPTILKFSSEELAKMFKR 650


>gi|218283240|ref|ZP_03489301.1| hypothetical protein EUBIFOR_01889 [Eubacterium biforme DSM 3989]
 gi|218215995|gb|EEC89533.1| hypothetical protein EUBIFOR_01889 [Eubacterium biforme DSM 3989]
          Length = 608

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 186/611 (30%), Positives = 302/611 (49%), Gaps = 24/611 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LSE + N IAAGE++ERP+  +KE +ENS+DA ++ +E     GG     ITD+G 
Sbjct: 3   KIHVLSEHLTNMIAAGEVVERPAGIVKECVENSIDAGATVIEVEAFQGGIERIVITDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A  RH TSK+   ++  NI T GFRGEALPSI +V+ + L +       G 
Sbjct: 63  GMDHEDAHLAFMRHATSKMHSEEELFNIQTMGFRGEALPSIASVAQVELQT--SNGEEGT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +  +   +          GT ++V  LF   PAR   LKS   E ++I D++ +MA+++
Sbjct: 121 LLRYNYGSLDVDEKCNCPRGTKLDVSGLFIKTPARFKHLKSTSYEFSVIADLMNKMALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F  S      ++    S NGN  E + Q+ G++   NA+     + +  + GY   
Sbjct: 181 PDIRFQLSHDGRVVFQ---TSGNGNIQEILYQMYGKEVAQNAIHFEGSNEDFHIHGYAIQ 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NR      ++ +N R ++   I   I  AY++ +P  R+P+VVL ++ D + VDVNV
Sbjct: 238 PKINRATKYFMFLTLNTRLIRSVAIQKAILDAYSDYMPPNRFPIVVLQMDSDTQLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      + + I ++IQ A+N    + S    +K    F Q     ++  K  
Sbjct: 298 HPNKWEVRLSKQGEMLDLIKKTIQDALNASLKTVSVSKPEKKSVIFEQPEIQYSYPVKPR 357

Query: 360 TSLTNTQEKLF----------LQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATH 403
                T E+ F          ++E R+     +P         + P+ + E         
Sbjct: 358 LKEDKTIEQSFQNYKPIKETIVEEKRIYEEKKIPEIKIQEEPISYPLPKVEETNDKGPEF 417

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           ++     AQ+H +YI+    +GLVIVDQHAA ER  +E++ +         Q L+ P  +
Sbjct: 418 FKHLQVLAQLHDSYILCSNEEGLVIVDQHAAQERYHYEQLNEKLLVQCTNKQPLMVPIQL 477

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           D+     A  M  +E     GI+ E FG + + +REIP      +  Q L+D++D  +++
Sbjct: 478 DVSSNVLAQYMTINEKTAFFGIEFEPFGTDQLILREIPLWFHDVDQKQFLQDLLDYFVEN 537

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                +    ++++ATMAC+ SIR  R +   EM +++ +++K      C HGRPT I +
Sbjct: 538 QDVD-MAKLRKHMIATMACHSSIRFNRPLSMQEMEQVILDLQKCKQPYHCPHGRPTVIVM 596

Query: 584 KLSDIEKLFGR 594
              ++ K F R
Sbjct: 597 SDGELRKEFER 607


>gi|189347801|ref|YP_001944330.1| DNA mismatch repair protein MutL [Chlorobium limicola DSM 245]
 gi|238692206|sp|B3EHI9|MUTL_CHLL2 RecName: Full=DNA mismatch repair protein mutL
 gi|189341948|gb|ACD91351.1| DNA mismatch repair protein MutL [Chlorobium limicola DSM 245]
          Length = 629

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 176/631 (27%), Positives = 304/631 (48%), Gaps = 43/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L + + N+I+AGE+++RP+  +KEL+EN++DA +SR+  +I   GK   +I DNG 
Sbjct: 3   KISRLPDTVANKISAGEVVQRPASVVKELLENAIDAGASRITVMIKDAGKELIRIIDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  + V+R  TSKIS  DD   + + GFRGEAL SI +VSH  L +R   +    
Sbjct: 63  GMNREDALLCVERFATSKISVVDDLDTLMSLGFRGEALASISSVSHFELKTRQAFSPLAL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G  ++    V+   GT + VR+LF+ +PAR  FLKS   E   I + +R +++AY
Sbjct: 123 KFRYEGGALAEESEVSGEEGTSISVRNLFYNVPARRKFLKSNATEFRHIFESVRSLSLAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +         +       N +  ER++   G DF    + + E+++ +++ G+ G 
Sbjct: 183 ADIEWRMYNDDEELFHFR----NPDIRERLNYYYGSDFSEGLISITEENDYLSIHGFIGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   + +      +IN R +Q++ +   ++ AY E +   + P  +L L IDP +VDVNV
Sbjct: 239 PGMLKRHKADQLFYINRRIIQNRMLSQALQQAYGELLEDRQAPFAMLFLGIDPSRVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------ 341
           HPAK  ++F +   +RN     +++A+     S  +                        
Sbjct: 299 HPAKLEVKFEDERSVRNMFYPVVKRAVQLHDFSPDASFVPDQGVQGESIQPEDEALNRRL 358

Query: 342 ---------------ISSFHQDNAPKTHLPKY-ATSLTNTQEKLFLQENRLSTNDLLPSD 385
                           + + Q + P++   ++   S             R     + P  
Sbjct: 359 MYHERPGRMATTAELYTDYRQHSLPQSSGKEHGPQSRQGEFFSAHEPLERWKKEGVEPEG 418

Query: 386 DPTYSED--NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           D  ++    +   ++  A          Q+H  YII Q  +G++I+DQH AHER+++E+ 
Sbjct: 419 DEVFTTMLQSRFHDDESAAGGGTEPKIWQLHNKYIICQIKNGMMIIDQHVAHERVLYERA 478

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
               N     SQ LL P+ I++ + E  +  E  +DL+RLG     FG   + I  IP  
Sbjct: 479 LDVMNQNVPNSQQLLFPQKIEMRQWEYEVFEEIRDDLYRLGFNLRDFGSKTVMIEGIPQD 538

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           +       +L+D+I    ++++   L+ R +N+  + +C  +I +G+K+   EM  L+  
Sbjct: 539 VRSGTEVTILQDMIAGYQENASKLKLEKR-DNLAKSYSCRNAIMAGQKLSLEEMRSLIDN 597

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +        C HGRP  IKL L  ++++FGR
Sbjct: 598 LFATRVPYSCPHGRPVIIKLMLDQLDRMFGR 628


>gi|182626338|ref|ZP_02954093.1| DNA mismatch repair protein MutL [Clostridium perfringens D str.
           JGS1721]
 gi|177908357|gb|EDT70902.1| DNA mismatch repair protein MutL [Clostridium perfringens D str.
           JGS1721]
          Length = 674

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 183/674 (27%), Positives = 312/674 (46%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GVHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARIDFKSKVSDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVRDLFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELVISGGEKESLTDCSMNRGTQIEVRDLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNP--------TIIRNFIIQSIQKAI------------------------- 326
           HP KS I+F++           + + + + ++                            
Sbjct: 300 HPTKSEIKFKDERFIFKVVFDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDKE 359

Query: 327 ----------------------NKKGISTSSVLSKKMISSFHQDNAPKTHL---PKYATS 361
                                      + S     K   +   D   K +     K+  S
Sbjct: 360 ISTLEKLKENINYKVSDDRKKEEIYSYNPSKDYEAKTEVNIPVDFLSKENQDESSKFNNS 419

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL--------------- 406
           L N + K    +  +S + +L  ++       +  +  E++ Y+                
Sbjct: 420 LENNEFKEVSAKREISYDPILIKNEIRDKVSENTYDSLESSDYKCNKNEYGNSLEETIYK 479

Query: 407 ------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                      Q ++ YI+++    L ++DQHAAHE+++FEK   D    K+  Q L+ P
Sbjct: 480 EAKFPKLKVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIP 539

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            +++L   +     E+ E   + G K   FG N+I I E+P  L K N  +L+  +I+ +
Sbjct: 540 LVVNLPTEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEVPYFLDKLNPTELITSMINNL 599

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
               T  T++ +   I A+M+C  ++++   +  +EM  L+ ++    +   C HGRPT 
Sbjct: 600 KKMGTGETVEVKYNKI-ASMSCRAAVKANDVLSILEMENLIEDLRYINDPFHCPHGRPTI 658

Query: 581 IKLKLSDIEKLFGR 594
           IK    +++K F R
Sbjct: 659 IKFTSYELDKKFKR 672


>gi|85859791|ref|YP_461993.1| DNA mismatch repair protein mutL [Syntrophus aciditrophicus SB]
 gi|123738831|sp|Q2LUR5|MUTL_SYNAS RecName: Full=DNA mismatch repair protein mutL
 gi|85722882|gb|ABC77825.1| DNA mismatch repair protein mutL [Syntrophus aciditrophicus SB]
          Length = 616

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 180/615 (29%), Positives = 311/615 (50%), Gaps = 25/615 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E + ++IAAGE++ERP+  +KEL+EN+LD+ ++ +   +  GG    ++ DNG 
Sbjct: 4   RIVLLPETLTHRIAAGEVVERPASIVKELLENALDSGATDINVELERGGCGLIRVADNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +A  RH TSKI+  DD   + +FGFRGEAL SI ++S   L++R   +  G 
Sbjct: 64  GIFAQDVTLAFARHATSKIAEFDDLYRVRSFGFRGEALASIASISRTELVTRTADDLAGM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G  I          GT + V  +F ++P R  FLK+E  E     DVI R+++A 
Sbjct: 124 RIVVEGGNICEKTEAGCPIGTSITVSRIFDSVPVRKKFLKAEATERAYCLDVITRLSLAN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V     +      ++          ER++ V+G    +    +  +++ + + G+   
Sbjct: 184 PEVRIRVFSKGR---ELCHYPATSRLSERVALVLGNADADRLQPIEGETDRVRVTGFASR 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F      Q Y F+N R V+D  +   + TAY   I   RYP VVL +++DP  VDVNV
Sbjct: 241 PDFTCATTRQIYTFVNRRHVRDHLLNHAVMTAYRRVIEPRRYPAVVLYVDLDPADVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR P  +   +++++   +   G S  S+       +    + P+       
Sbjct: 301 HPAKLEVRFRQPRTVYEAVVEALSGMLRGMGQSALSLTRYGPAGTAEIGHIPQEDYESRI 360

Query: 360 TSL--------------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +                       N   K      R+   ++   +    S      + S
Sbjct: 361 SEALRRYSLASGSRKMMYGTGTEANPVNKKHFLAERIRGEEIHARESLLLSPAPALPQNS 420

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
               +   +    +  +Y+I    DG++++DQHAAHER++FEK+++     K   Q LL 
Sbjct: 421 FHPVFADLVYLGSLWDSYLIFSVADGMLLIDQHAAHERILFEKIKKAAERNKTAVQVLLI 480

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           PEI++L   +     +    L ++GI+AE FG   I I+ +P +L+  +   L++D+I E
Sbjct: 481 PEILNLSRPDFERFGDVVPLLEQVGIEAEPFGGEEIIIKALPTLLAHLDPGVLVKDLIAE 540

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
             D     +LQ++ E I A +AC G++++G+K+   E+ +L R+++  P ++ C HGRP 
Sbjct: 541 CADRGGGLSLQEKGEKIYAYLACRGAVKAGQKLIREEVAQLCRDLDATPFAATCPHGRPV 600

Query: 580 FIKLKLSDIEKLFGR 594
           ++   L DIE++F R
Sbjct: 601 YVLYPLKDIERMFRR 615


>gi|222474963|ref|YP_002563378.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str.
           Florida]
 gi|222419099|gb|ACM49122.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str.
           Florida]
          Length = 632

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 213/628 (33%), Positives = 336/628 (53%), Gaps = 38/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L  K +N+IAAGE+I+ P+  +KEL+ENS+DA ++ +  +I  GG++   + D+G 
Sbjct: 7   PIVVLDAKTVNKIAAGEVIDCPASVVKELVENSIDAGATTINVLIDKGGRNLISVIDDGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+  +E+  A   H TSK+ D D +NI + GFRGE L SI AV+   ++S+         
Sbjct: 67  GIPRDEMERAFICHATSKLPDNDLNNIRSMGFRGEGLTSIAAVARTKMVSKYRGCTEAWS 126

Query: 121 IAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           I + G EK   + P A+  GT +EVRDLFF  P RL FL++E+ ET  I D++ R A A 
Sbjct: 127 IVLEGGEKTRDLSPEALPCGTSIEVRDLFFATPTRLKFLRTEKAETQSIVDLMYRFATAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGYT 237
              +F+ +      +K   +    +   R+ ++   G+ F   ++E+   S+ I + GY 
Sbjct: 187 FSTAFSLTIADKQIFKYPAR---EDLMSRLWEMKPFGDAFREQSLEVRFHSDAINITGYI 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +PTFNR   +  Y F+NGR V     +  I++AY+E IP  R+PVVV+ +EI P  VDV
Sbjct: 244 SVPTFNRSRPDMIYTFVNGRPVHSTLFMGAIKSAYSEFIPRDRHPVVVMCMEILPGDVDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--TSSVLSKKMISSFHQDNAPKTHL 355
           NVHP+K  +RFRN   + + +++++  A++                +  F  DN P    
Sbjct: 304 NVHPSKLEVRFRNRKQVYSVVVEALATALSSNVYRELPPRTPVGGGLDHFAVDNTPVLDT 363

Query: 356 PKYAT---------------------SLTNTQEKLFLQENRLS-------TNDLLPSDDP 387
           P Y                         ++  E       R +       +     +  P
Sbjct: 364 PHYGKVHDYGVAVGPKLSVQQTGGGGEFSSKPEHAIENPPRAAELFSFLGSGSSRRTTRP 423

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             S D++           LG A  Q+   YI+S+  D ++IVDQHAAHERL +E M++  
Sbjct: 424 VLSYDSEAHIVPLIEELPLGNAVCQLFDRYIVSRAGDHVIIVDQHAAHERLTYEYMKKVT 483

Query: 448 NSTKITSQTLLTPEIIDLLEGEC-ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +  Q LL PE+++L       L+ E+ E L + G+  E  G   +A+RE+PAIL  
Sbjct: 484 ADEGMKRQVLLMPELVELDNEYELELLGEYKEKLLKFGLVIEPMGSMVVAVREVPAILGV 543

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            ++  ++  I++ I++      ++++I+++  T+ACY SIRSGR ++  EMN LLR+ME 
Sbjct: 544 FDVKAMIAKIVESIVEVGDALFMREKIKHVCGTIACYSSIRSGRTLKLEEMNSLLRQMED 603

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            P+S QCNHGRPT++KL LS+I++LF R
Sbjct: 604 TPHSGQCNHGRPTYVKLSLSEIDRLFER 631


>gi|18310138|ref|NP_562072.1| DNA mismatch repair protein [Clostridium perfringens str. 13]
 gi|20455087|sp|Q8XL86|MUTL_CLOPE RecName: Full=DNA mismatch repair protein mutL
 gi|18144817|dbj|BAB80862.1| DNA mismatch repair protein [Clostridium perfringens str. 13]
          Length = 674

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 183/674 (27%), Positives = 308/674 (45%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GVHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARVDFKSKTEDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVRDLFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELIISGGEKESLTDCSMNRGTQIEVRDLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNP--------TIIRNFIIQSIQKAI------------------------- 326
           HP KS I+F++           + + + + ++                            
Sbjct: 300 HPTKSEIKFKDERFIFKVVFDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDKE 359

Query: 327 ----------------------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKY---ATS 361
                                      + S     K   +   D   K +  +      S
Sbjct: 360 ISTLEKLKENINYKVSEDKKKEEIYSYNPSKDYEAKTEVNIPVDFLSKENQDESFSINNS 419

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL--------------- 406
           L N + K    +  +S + +L  ++          E  E + Y+                
Sbjct: 420 LENNEFKEVSAKREISYDPILIKNELKDKVSESTSESLERSDYKCNKNEYGNSIEEIIYR 479

Query: 407 ------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                      Q ++ YI+++    L ++DQHAAHE+++FEK   D    K+  Q L+ P
Sbjct: 480 EAKFPKLRVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIP 539

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            ++ L   +     E+ E   + G K   FG N+I I E+P  L K N  +L+  +I+ +
Sbjct: 540 LVVTLPTEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEVPYFLDKLNPTELITSMINNL 599

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
               T  T++ +   I A+M+C  ++++   +  +EM  L+ ++    +   C HGRPT 
Sbjct: 600 KKMGTGETVEVKYNKI-ASMSCRAAVKANDVLSILEMENLIEDLRYINDPFHCPHGRPTI 658

Query: 581 IKLKLSDIEKLFGR 594
           IK    +++K F R
Sbjct: 659 IKFTSYELDKKFKR 672


>gi|15604708|ref|NP_221226.1| DNA mismatch repair protein [Rickettsia prowazekii str. Madrid E]
 gi|6225738|sp|Q9ZC88|MUTL_RICPR RecName: Full=DNA mismatch repair protein mutL
 gi|3861403|emb|CAA15302.1| DNA MISMATCH REPAIR PROTEIN MUTL (mutL) [Rickettsia prowazekii]
          Length = 595

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/597 (38%), Positives = 363/597 (60%), Gaps = 7/597 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++D  S++++ ++   GK+   ++D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAIDGGSTKIDIILERAGKNLIIVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+++ DF NIHTFGFRGEAL SI A+S + + S+  + +   
Sbjct: 61  IGMTDKELEIAVKRHTTSKLNESDFFNIHTFGFRGEALASIAAISKMLITSKKREADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     +     N GT +EVRDLFF  PARL FL+S++ E     D+++++A+A+
Sbjct: 121 QIKLIGGNKQQITVSVHNEGTKIEVRDLFFATPARLKFLRSDKTELAASIDIVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P++SF       N  K+  Q+ +   N  +RI  VIG+ FI NA  ++ K+ + ++ GYT
Sbjct: 181 PRISFNLIHDNKNLLKLKGQNKDSETNLKQRIIDVIGDVFIKNAAYIDFKTPDFSICGYT 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+N+ ++   ++FIN R ++DK +   +R AY + +   RY + V+ L+IDP+ VDV
Sbjct: 241 SIPTYNKASSEDQFLFINNRPIKDKLLQVALRVAYQDYLARDRYALCVIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   T++ +     S  +++  P  H   
Sbjct: 301 NVHPAKAEVRFHDPNYVRNILIEAIKNALTNKSQITATTIGSDKNSLVNKE--PTIHKAT 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              S  +       + N           +    +  +         Y+ G+A AQ+H  Y
Sbjct: 359 NVNSKASEYTSFNFKRNTAYHTLPYGKIEQEVGKCIEH-NNQSHKQYKFGVAKAQLHTTY 417

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI-MEH 476
           IISQT D +VI+DQHAA+ERL + K++    + ++  Q LL PEI++L   + A    E+
Sbjct: 418 IISQTEDSIVIIDQHAAYERLGYAKIKYCLKNGELVKQRLLIPEIVELSSQKKADCLYEN 477

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L +L +  E+FG  +I + EIP IL   N+ +L++D+ D + D +    L++ IE++
Sbjct: 478 REKLFKLSLTIEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFAKNMPLKELIEHV 537

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           +    C+ SIR+ RK+ + EMN LLR+ME    S+QCN+ RPT+I+LKL DIE LF 
Sbjct: 538 IKIYICHYSIRAARKLSADEMNSLLRQMENMSFSAQCNNNRPTYIELKLKDIELLFR 594


>gi|189499282|ref|YP_001958752.1| DNA mismatch repair protein MutL [Chlorobium phaeobacteroides BS1]
 gi|238692253|sp|B3EL44|MUTL_CHLPB RecName: Full=DNA mismatch repair protein mutL
 gi|189494723|gb|ACE03271.1| DNA mismatch repair protein MutL [Chlorobium phaeobacteroides BS1]
          Length = 624

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 179/627 (28%), Positives = 308/627 (49%), Gaps = 40/627 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + + N+I+AGE+++RP+  +KEL+EN++DA ++R+   I   GK   Q+ DNG 
Sbjct: 3   RIARLPDIVANKISAGEVVQRPASVVKELLENAIDAGATRITVAIKDAGKELVQVIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+    V+R  TSKISD  +   + T GFRGEAL SI  VSH  L +R   +N G 
Sbjct: 63  GMDEEDALRCVERFATSKISDAEELDALTTLGFRGEALASISTVSHFELRTRRENDNVGI 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+   G  +S     A  PGT V VR+LF+ +PAR  FLKS   E   I + ++   +AY
Sbjct: 123 QLRYEGGVLSERGKAASEPGTAVSVRNLFYNVPARRKFLKSNATEFKHIFESVKAQVLAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ +         +         +  ER++   G+DF  + +E+++ ++ ++L GY G 
Sbjct: 183 PEIQWQMINDDETLFDFRS----SDMHERLNFFFGDDFAGSLIEVHDDNDFLSLHGYVGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  +   N+ ++++N R +Q++ +   ++ AY E +     P V+L L IDP+Q DVNV
Sbjct: 239 PSMQKRQKNEQFIYLNRRVIQNRMLSQALQQAYGELLVERHSPFVLLFLGIDPQQTDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--------------------------- 332
           HPAK  ++F +   +R      I++++  +  S                           
Sbjct: 299 HPAKLEVKFEDERSVRTMFYTIIKRSVRMQDFSPDVGGEGFHETSDSFSSRSSQHSDARL 358

Query: 333 -----TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                 S   S   +    Q++ PK  +P   T ++  +E      +     D       
Sbjct: 359 GFQAVPSRASSTDDLYREFQESTPKRPMPDR-TRVSEQEEMFSHSADIFCEPDREFRSSD 417

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                 + V+       +      Q+H  YII Q   GL+++DQH AHER+++E+     
Sbjct: 418 FGQVSEEFVDGVRLEPEEKDPKIWQLHNKYIICQIKTGLMLIDQHVAHERVLYERAVDIM 477

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           ++    +Q LL P+ ++L   E  + +E  +DL RLG      G   + I  +P  +   
Sbjct: 478 DNNVPNAQQLLFPQKVELKPWEFEIYLEICDDLDRLGFNLGTLGTRTVMIEGVPQDVRSG 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +   +L+D+I E   +++   L+ R EN+  + +C  +I SG+ +   +M  L+  +   
Sbjct: 538 SEAYILQDMIQEYQQNASKLKLEKR-ENLAKSYSCRNAIMSGQALSLEDMRSLIDRLFAT 596

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                C HGRP  I++ L  ++++FGR
Sbjct: 597 KMPYVCPHGRPVIIRISLDQLDRMFGR 623


>gi|224542101|ref|ZP_03682640.1| hypothetical protein CATMIT_01276 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525034|gb|EEF94139.1| hypothetical protein CATMIT_01276 [Catenibacterium mitsuokai DSM
           15897]
          Length = 592

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 183/594 (30%), Positives = 300/594 (50%), Gaps = 10/594 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LSE + N+IAAGE++ERP+  IKEL ENS+DA++ R+  ++  GG S   + D+G G
Sbjct: 4   IRQLSENLANKIAAGEVVERPASVIKELTENSIDAKAKRITILVEQGGTSSMSVIDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M   +  +   RH TSKI D  D  NI T GFRGEA+PSI ++S  TL +         +
Sbjct: 64  MNRTDALLCFSRHATSKIVDENDLFNITTLGFRGEAIPSIASISVFTLET--SDGEENTK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     K  SV  VAMN GT + V  +F  +PARL ++KS   E   I   + R+A+A+P
Sbjct: 122 VEYEFGKRKSVDSVAMNRGTKITVERIFQNVPARLKYMKSINAEFAAIYSYVERLALAHP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SFT        +K N      N  E IS++ G     N + ++  + E  + GY    
Sbjct: 182 EISFTLVHDHKTIFKTN---GRNNLLEVISEIYGLPVAKNMIHVDFGNEEFHVSGYISKI 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R + N     +N R V++   ++TI   Y   +   R+P+ +L +++DP  VDVNVH
Sbjct: 239 DTSRSSKNHIVTLVNHRYVKNMKTINTINEVYRRYLADKRFPIAILEIDVDPYLVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +RF   T ++  +++ +++A++KK ++      +   +SF    A  T       
Sbjct: 299 PAKLEVRFSKETELKELLLKGLEEALSKKNLTYKPSTRETEKASFKPSLAQMTI--PLDE 356

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                +E+  L+       D+   +         P EE      +      Q    YI+ 
Sbjct: 357 VFEEVKEEPVLETVETVHEDIPVYEPEKVEVKAQPKEEPLKPIKEKIKVIGQTRGTYILG 416

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +   G  I+DQHAA ER+ +E     F+   ++ Q ++ P   +  E EC +I EH E L
Sbjct: 417 ENERGFYIIDQHAAQERINYEYFLNKFSHPDLSIQPMIVPLTFEYPESECLVIDEHKELL 476

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
             +GI  E FG ++  +R +P  +   +    + ++I E++++  +  +    E+ +AT+
Sbjct: 477 EEVGIHLESFGRHSYIVRGLPLWMKNIDEKIFIDEMIQEVLNN-QSVDIVAMQEHAIATL 535

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AC  S++    + + +M  ++  + +  N   C HGRPT I     +IEKLF R
Sbjct: 536 ACKASVKGNTYLTTQDMQTIVDNLMRCDNPYVCPHGRPTIIFYSDYEIEKLFKR 589


>gi|147677677|ref|YP_001211892.1| DNA mismatch repair protein [Pelotomaculum thermopropionicum SI]
 gi|189030403|sp|A5D2K5|MUTL_PELTS RecName: Full=DNA mismatch repair protein mutL
 gi|146273774|dbj|BAF59523.1| DNA mismatch repair enzyme [Pelotomaculum thermopropionicum SI]
          Length = 605

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/607 (30%), Positives = 291/607 (47%), Gaps = 20/607 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E    QIAAGE++ERP   +KEL+ENS+DA + R+   + GGG     + D+G G
Sbjct: 4   IIILDEFTAGQIAAGEVVERPVSVVKELVENSIDAGAGRIVVELEGGGLQAISVLDDGCG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E++ +A QRH TSKI  SDD + I T GFRGEALPSI AVS +T+ +R      G +
Sbjct: 64  MSEEDLVLAFQRHATSKIKCSDDLNRITTLGFRGEALPSIAAVSKITVATRTRDALAGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
              +G ++    P+   PGT + VRDLF+  PAR   +K+   E  L   +I R+A+A P
Sbjct: 124 AEFAGGELIGKGPIGCPPGTSITVRDLFYNTPARRKAMKAPSAEGALCGGLISRLALARP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F          ++ +   +GN  + ++ V G       + +   +  +++ GY G P
Sbjct: 184 EICFEVGIKGR---RVFYSPGSGNLIDSLAAVYGRQIAAEMIAVKAVAEGLSINGYLGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + +R   +   V INGR V+   I   I  AY   +  GR PV VL L + P  +DVN+H
Sbjct: 241 SLSRSTRSHITVIINGRYVRCPAIAEAIEGAYGTLLSRGRRPVAVLSLSVSPELLDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK--- 357
           PAK  +R        + +   ++ A+  K +  S+   ++       +            
Sbjct: 301 PAKLEVRLLEEEKTASLLAGILKDALADKAVIPSAGNFRQAALRLENNKPGAEIFDGLGA 360

Query: 358 --YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ--------LG 407
               T    + ++    + +     L   D   Y  D   V E+E T           + 
Sbjct: 361 GIIKTPGGGSSDRHVPGDKKNIQECLTLPDAHEYVADRVWVREAEDTPAYGNKVEKLPVL 420

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A A     YI++   DGL IVDQHAAHER+I+E++          SQ LL P +++L  
Sbjct: 421 NALAHFPPVYILAGGEDGLYIVDQHAAHERIIYEEILSS--GRTRPSQYLLVPVMLELDY 478

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E ++++E        G   E FG N   +R +P  L      +++ D++D      T  
Sbjct: 479 REASILIERIIWFTDAGFVIEHFGGNTFLLRGVPFELPAGQEREIILDLLDYFESKGTGA 538

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            + D  +   A++AC  ++R+G K+    MN LL+ +    +   C HGRP  IKL   +
Sbjct: 539 GMTDFFKWAAASIACRSAVRAGEKLSLPSMNALLQRLSGTASPYTCPHGRPVVIKLSFRE 598

Query: 588 IEKLFGR 594
           +E  F R
Sbjct: 599 LELRFRR 605


>gi|303256707|ref|ZP_07342721.1| DNA mismatch repair protein MutL [Burkholderiales bacterium 1_1_47]
 gi|302860198|gb|EFL83275.1| DNA mismatch repair protein MutL [Burkholderiales bacterium 1_1_47]
          Length = 631

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 189/626 (30%), Positives = 331/626 (52%), Gaps = 43/626 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS+++I+QIAAGE++ERP+  +KEL+EN++DA +  VE  I GGG     ++DNG 
Sbjct: 14  KIQELSDQLISQIAAGEVVERPASVVKELVENAIDAGADSVEVRIEGGGIKRIVVSDNGC 73

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV+RH TSK+S  D+  ++ + GFRGEAL SI +VS + ++SR    +   
Sbjct: 74  GIPKDQLALAVKRHATSKVSNLDELESVSSLGFRGEALASIASVSDMKVISRVAGEDA-- 131

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                      +   + N GT +EV DLF+  PAR  FLKSE  E      VI R+A+AY
Sbjct: 132 ----FSIADGEISAASGNKGTRIEVADLFYKTPARRKFLKSEGTEAAHCQTVIERIALAY 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F F         +       +  ER+++++  DF +    L+ K+  + L G+  +
Sbjct: 188 PEVAFLFVANGKPIINLPA----SSIEERLTRLMPRDFRDAHRALDIKAPALRLYGWVCL 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A+  Y ++NGR V+DK +   +R AY + +     P   L L++DP +VDVNV
Sbjct: 244 PTAARSRADCQYFYVNGRFVRDKVLSHGVRMAYQDVLHGSSQPSYCLFLQMDPHKVDVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI--STSSVLSKKMISSFHQDNAPKTHLPK 357
           HP KS +R R+   +  FI  +++ A+ +  I   +S  +    + S  +D + +     
Sbjct: 304 HPTKSEVRMRDSQAVHQFIFHAVEDALARTTIVDPSSGEIMDTALPSSPRDASAQAPAEA 363

Query: 358 YATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDND--------------------- 394
                 N         + +R +T   L    P      +                     
Sbjct: 364 PVAPTVNPSSFRPAQPKPSRTNTEAYLDFSSPHPKSFQNSFPTTIAAMKVDPATLSANHA 423

Query: 395 ---PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              P  E+      LG A  Q+   +II++ + G+V+VD HAAHER+++E +++ F+  K
Sbjct: 424 TPKPAAEAPKRPQPLGRAVGQVCGTFIIAENSAGMVLVDMHAAHERILYEHLKKSFDERK 483

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK---KN 508
           +  Q +L P +  +   + A   +  E+L +LG++    GPN +++R +P ++     + 
Sbjct: 484 MPMQEMLIPLVFTVTPEQMATFEDAREELEQLGLELSAVGPNQLSLRSVPQLMINQISQA 543

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
            P ++R+++D+      +  + ++   +L+ MAC+ ++R  R +   EM+ +LR+ME+  
Sbjct: 544 GPTIVREVLDDFRQYGKSTAMTEKRNEVLSRMACHAAVRVNRILTIEEMDAILRQMEQTD 603

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +CNHGRPT+++L   +++  F R
Sbjct: 604 RADECNHGRPTWVQLSAKELDSFFMR 629


>gi|149280309|ref|ZP_01886431.1| DNA mismatch repair protein [Pedobacter sp. BAL39]
 gi|149228998|gb|EDM34395.1| DNA mismatch repair protein [Pedobacter sp. BAL39]
          Length = 615

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 177/614 (28%), Positives = 313/614 (50%), Gaps = 29/614 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KEL+EN++DA +++++ ++   GK+  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVVQRPASAVKELLENAIDAGATKIQLILKDAGKALIQVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M  +RH TSK+   +D   I T GFRGEA+ SI A++ + L +R  ++  G  
Sbjct: 65  MSITDARMCFERHATSKVRKAEDLFAIRTMGFRGEAMASIAAIAQVELKTRRHEDELGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++ S  PVA + GT + +++LFF  PAR NFLKS   E   + D  +R+++AYP
Sbjct: 125 IHIEGSEVVSQEPVAASEGTSICIKNLFFNTPARRNFLKSNPAEMRHVIDEFQRVSLAYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+        Y++          +R+  + G ++    + + E+++ I L+G+ G P
Sbjct: 185 AIAFSLHHDGVEIYRLPS----SVLKQRVVHLFGNNYNQRLIPVEEETSIINLKGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++D ++   +  AY + +P   +P+ VL ++IDP ++DVNVH
Sbjct: 241 EFAKKTRGEQFFFVNNRFIKDNYLNHAVNRAYEDLLPDDHFPLYVLFIDIDPAKIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM-ISSFHQDNAPKTHLPKY- 358
           P K+ I++ +   I   +  ++++++ +  IS +    ++   S      AP+  +P   
Sbjct: 301 PTKTEIKYLDEKSIYAILHSAVKRSLGRFNISPTIDFDQETGFSGMITPKAPEEIVPPSI 360

Query: 359 -------ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG---- 407
                    S    Q++     N          +  +  E  +   E + +    G    
Sbjct: 361 SFNPDFNPFSEDKPQKETHFSRNYSGGISPSTKNWGSLYEIANHAPEEQTSMELPGLPAD 420

Query: 408 -------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                      Q+H  YIISQ   GL+++DQ AAHER+++E+        K  SQ  L P
Sbjct: 421 DSLVPVQKQLMQLHNKYIISQIKSGLMVIDQQAAHERILYERFSLHLEDRKGASQQSLFP 480

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI--PQLLRDIID 518
           + + L   +  L     +D+  LG +   FG N + I  IP  L   NI   QL   +I+
Sbjct: 481 QTVTLSHNDYELAKSLLDDIKSLGFEVREFGKNTLVIEGIPVDLGSNNINETQLFEHLIE 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
              +S     L D+ + +  +MA   SI+SG  +   EMN L+ E+    + +    G+P
Sbjct: 541 GFKNSQQELKL-DKRDALARSMARNSSIKSGAVLGQQEMNTLIEELFACKSPNFSISGKP 599

Query: 579 TFIKLKLSDIEKLF 592
               + L++++K F
Sbjct: 600 VIQTIGLTELDKKF 613


>gi|294339880|emb|CAZ88243.1| putative DNA mismatch repair protein mutL [Thiomonas sp. 3As]
          Length = 613

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 192/607 (31%), Positives = 336/607 (55%), Gaps = 16/607 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L + +I+QIAAGE+IERP+ A++EL++N++D+ +S +   +  GG    Q+ D+G 
Sbjct: 7   PIRPLPDVLISQIAAGEVIERPASALRELLDNAIDSGASALTVRLEQGGLGSVQVEDDGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +EE+P+A+ RH TSKI+D  +  +    GFRGEAL ++ AV+ + ++SR    + GA
Sbjct: 67  GIPAEELPLALLRHATSKIADLDELHHAAHLGFRGEALAAMAAVAEIEIISRRAGAD-GA 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I  S  ++++V+P A   GT V +R LFF +PAR  FLKS Q E     DV +R AIA+
Sbjct: 126 RIHASAGQVAAVQPTAAQQGTRVTLRQLFFNLPARRKFLKSPQTEYAWCADVFKRTAIAH 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++         + +     +     +R++ V+GE F  +A+ ++ +   + ++G    
Sbjct: 186 PQIALRLWHDGQLKLQFERDPSPHGL-DRLAAVLGEAFSAHALPVSAQIGPLAVRGLICK 244

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A+  ++ +N R V+D+ +   +R AYA+ +     P   LLL++    VDVNV
Sbjct: 245 PTAARARADVQHIIVNNRWVRDRTVAHGVRAAYADVLHGALQPQYALLLDLPSELVDVNV 304

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL---- 355
           HPAKS +RFR+ + +   +  ++++ + + G   SS       +++ Q  +         
Sbjct: 305 HPAKSEVRFRDSSAVHQAVRHAVEQVLARAGGEASSSHPSAPPAAWEQPPSALPTTAALA 364

Query: 356 -----PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND--PVEESEATHYQLGI 408
                P  +    +   + +          L   D            +  ++   + LG 
Sbjct: 365 FGVARPSPSPIPWDALSRAYAPLATADAAPLQAQDSAAPRPYAQATDLAAAQPDDFPLGF 424

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLE 467
           A AQ+   YI++Q   GLVIVD HAAHER+++E+++    +   +  Q LL P      +
Sbjct: 425 ALAQLLGIYILAQNRHGLVIVDMHAAHERIVYERLKAAEQADAPVAVQPLLIPAAFAASD 484

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E     +H + L  LG++ +R GP+++ +R  P +L+  +  +L R ++ ++I   T+ 
Sbjct: 485 AEMGAAEDHADALRSLGVELDRAGPSSLVVRATPTLLAHADPIRLARGLLADLISQGTSS 544

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            LQ+R   +L++MAC+G++R+ R++   EMN LLR+ME+   + QCNHGRPT+ ++ L+D
Sbjct: 545 RLQERRNALLSSMACHGAVRANRQLTLAEMNGLLRDMERTERADQCNHGRPTWRQIGLAD 604

Query: 588 IEKLFGR 594
           ++ LF R
Sbjct: 605 LDALFLR 611


>gi|303232202|ref|ZP_07318905.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302513308|gb|EFL55347.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 652

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 188/655 (28%), Positives = 304/655 (46%), Gaps = 68/655 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  +KELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVVKELIENSIDAGATSIEVEIGEGGSAYMRITDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +AV RH TSKI   +D  +I + GFRGEAL SI +VSH  L +R      G 
Sbjct: 63  GMTEEDARLAVLRHATSKIQNVEDLFDIASLGFRGEALASIASVSHFVLTTRTVDQELGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G   +   P    PGT +EV++LFF  PAR  FLK+E+ E++ I D++ ++A++ 
Sbjct: 123 RILIDGGTFTDCIPYGAAPGTTIEVKELFFNTPARRKFLKTERTESSKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F  +              + +  + ++ + G    N+   +  +S  I ++G    
Sbjct: 183 PHIAFKLTIDDR---VAIITPGSSSIQDTVAALYGYKTKNDIFPIAYESEHIYIEGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK IL  I  AY   +P   YP+V+L + +    VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTILKAIDNAYHALLPKSGYPLVLLHITVPASMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN----KKGISTSSVLSKKMISSFHQDNAPKTHL 355
           HP KS ++F +  II   +  +I  A+N    ++    SS  ++ + +            
Sbjct: 300 HPRKSEVKFEDDKIIFKAVYHAILNALNNPLHERYERESSSFTQPLETESQGSGYNSYQA 359

Query: 356 PKYATSLTNT------------------------------------QEKLFLQENRLSTN 379
           P+  +   +T                                    +EK F      +T 
Sbjct: 360 PQVLSDHNDTAEHIATAIDYDKVFGGRRTKGYEVLRQDTRDFVDALKEKGFTPPAPKATY 419

Query: 380 DLLPSDDPTYSE-----DNDPVEESEATHYQLGIAC---------------AQIHQNYII 419
           +    ++ +++       +   E+ E  H                       Q+   YI+
Sbjct: 420 EQETFEESSFTSVPTAYTSYTAEDKEKFHQIQEQHIEDESRDIQKSGFLPMGQVASCYIL 479

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  D L I+DQHAAHER+ ++++    +S  I  Q+LL P   +  E E  L+    + 
Sbjct: 480 AKKGDDLYIIDQHAAHERVRYDRL--CKSSEAIPMQSLLVPTYSNATEDEMNLVENEQDA 537

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG + E  GPN I +   P  L +    ++L  +   + D       Q     +LA 
Sbjct: 538 LLDLGFEVELGGPNQIKLVGAPVDLVESKAQEILSYVFTFLHDHEQPTKAQ-LRHEMLAY 596

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +C G+I+SG  +   +M  L+ ++        C HGRPT IK    ++ KLF R
Sbjct: 597 ASCRGAIKSGHNLNMYQMTTLIEDLFHTDKPYVCPHGRPTIIKFTPDELGKLFLR 651


>gi|303228550|ref|ZP_07315378.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516797|gb|EFL58711.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 652

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 189/655 (28%), Positives = 303/655 (46%), Gaps = 68/655 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  +KELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVVKELIENSIDAGATSIEVEIGEGGSAYMRITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +AV RH TSKI   +D  +I + GFRGEAL SI +VSH  L +R      G 
Sbjct: 63  GMTEEDARLAVLRHATSKIQNVEDLFDIASLGFRGEALASIASVSHFVLTTRTVDQELGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G   +   P    PGT +EV++LFF  PAR  FLK+E+ E++ I D++ ++A++ 
Sbjct: 123 RILIDGGTFTDCIPYGAAPGTTIEVKELFFNTPARRKFLKTERTESSKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F  +               G   + ++ + G    N+   +  +S  I ++G    
Sbjct: 183 PHIAFKLTIDDR---VAIITPGTGPIQDTVAALYGYKTKNDIFPIAYESEHIYIEGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK IL  I  AY   +P   YP+V+L + +    VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTILKAIDNAYHALLPKSGYPLVLLHITVPASMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN----KKGISTSSVLSKKMISSFHQDNAPKTHL 355
           HP KS ++F +  II   +  +I  A+N    ++    SS  ++ + +            
Sbjct: 300 HPRKSEVKFEDDKIIFKAVYHAILNALNNPLHERYERESSSFTQPLETESQGSGYNSYQA 359

Query: 356 PKYATSLTNT------------------------------------QEKLFLQENRLSTN 379
           P+  +   +T                                    +EK F      +T 
Sbjct: 360 PQVLSDHNDTAEHIATAIDYDKVFGGRRTKGYEVLRQDTRDFVDALKEKGFTPPAPKATY 419

Query: 380 DLLPSDDPTYSE-----DNDPVEESEATHYQLGIAC---------------AQIHQNYII 419
           +    ++ +++       +   E+ E  H                       Q+   YI+
Sbjct: 420 EQEAFEESSFTSVPTAYTSYTAEDKEKFHQIQEQHIEDESRDIQKSGFLPMGQVASCYIL 479

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  D L I+DQHAAHER+ ++++    +S  I  Q+LL P   +  E E  L+    + 
Sbjct: 480 AKKGDDLYIIDQHAAHERVRYDRL--CKSSEAIPMQSLLVPTYSNATEDEMNLVENEQDA 537

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG + E  GPN I +   P  L +    ++L  +   + D       Q     +LA 
Sbjct: 538 LLDLGFEVELGGPNQIKLVGAPVDLVESKAQEILSYVFTFLHDHEQPTKAQ-LRHEMLAY 596

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +C G+I+SG  +   +M  L+ ++        C HGRPT IK    ++ KLF R
Sbjct: 597 ASCRGAIKSGHNLNMYQMTTLIEDLFHTDKPYVCPHGRPTIIKFTPDELGKLFLR 651


>gi|292572544|gb|ADE30459.1| DNA mismatch repair protein MutL [Rickettsia prowazekii Rp22]
          Length = 595

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 227/597 (38%), Positives = 363/597 (60%), Gaps = 7/597 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  IN+IAAGE+IERP+  +KEL+EN++D  S++++ ++   GK+   ++D+G
Sbjct: 1   MTIKFLSESTINRIAAGEVIERPASVVKELVENAIDGGSTKIDIILERAGKNLIIVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            GMT +E+ +AV+RH TSK+++ DF NIHTFGFRGEAL SI A+S + + S+  + +   
Sbjct: 61  IGMTDKELEIAVKRHTTSKLNESDFFNIHTFGFRGEALASIAAISKMLITSKKREADKAF 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G     +     N GT +EVRDLFF  PARL FL+S++ E     D+++++A+A+
Sbjct: 121 QIKLIGGNKQQITVSVHNEGTKIEVRDLFFATPARLKFLRSDKTELAASIDIVKKIALAH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P++SF       N  K+  Q+ +   N  +RI  VIG+ FI NA  ++ K+ + ++ GY+
Sbjct: 181 PRISFNLIHDNKNLLKLKGQNKDSETNLKQRIIDVIGDVFIKNAAYIDFKTPDFSICGYS 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            IPT+N+ ++   ++FIN R ++DK +   +R AY + +   RY + V+ L+IDP+ VDV
Sbjct: 241 SIPTYNKASSEDQFLFINNRPIKDKLLQVALRVAYQDYLARDRYALCVIFLQIDPQLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RF +P  +RN +I++I+ A+  K   T++ +     S  +++  P  H   
Sbjct: 301 NVHPAKAEVRFHDPNYVRNILIEAIKNALTNKSQITATTIGSDKNSLVNKE--PTIHKAT 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              S  +       + N           +    +  +         Y+ G+A AQ+H  Y
Sbjct: 359 NVNSKASEYTSFNFKRNTAYHTLPYGKIEQEVGKCIEH-NNQSHKQYKFGVAKAQLHTTY 417

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI-MEH 476
           IISQT D +VI+DQHAA+ERL + K++    + ++  Q LL PEI++L   + A    E+
Sbjct: 418 IISQTEDSIVIIDQHAAYERLGYAKIKYCLKNGELVKQRLLIPEIVELSSQKKADCLYEN 477

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L +L +  E+FG  +I + EIP IL   N+ +L++D+ D + D +    L++ IE++
Sbjct: 478 REKLFKLSLTIEKFGEKSIIVTEIPNILGDVNVQKLIQDLADHLSDFAKNMPLKELIEHV 537

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           +    C+ SIR+ RK+ + EMN LLR+ME    S+QCN+ RPT+I+LKL DIE LF 
Sbjct: 538 IKIYICHYSIRAARKLSADEMNSLLRQMENMSFSAQCNNNRPTYIELKLKDIELLFR 594


>gi|269958988|ref|YP_003328777.1| DNA mismatch repair protein (MutL) [Anaplasma centrale str. Israel]
 gi|269848819|gb|ACZ49463.1| DNA mismatch repair protein (MutL) [Anaplasma centrale str. Israel]
          Length = 632

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/628 (34%), Positives = 334/628 (53%), Gaps = 38/628 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L  K +N+IAAGE+I+ P+  +KEL+ENS+DA ++ +  +I  GG++   + D+G 
Sbjct: 7   PIVVLDAKTVNKIAAGEVIDCPASVVKELVENSIDAGATTINVLIDKGGRNLISVIDDGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+  +E+  A   H TSK+ D D +NI + GFRGE L SI AV+   ++S+         
Sbjct: 67  GIPRDEMERAFICHATSKLPDNDLNNIRSMGFRGEGLTSIAAVARTKMVSKYRGCTEAWS 126

Query: 121 IAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           I +  GEK   + P A+  GT +EVRDLFF  P RL FL++E+ ET  I D++ R A A 
Sbjct: 127 IVLEGGEKTRDLSPEALPCGTSIEVRDLFFATPTRLKFLRTEKAETQSIVDLMYRFATAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGYT 237
              +F+ +      +K        +   R+ ++   G+ F   ++E+   S+ I + GY 
Sbjct: 187 FSTAFSLTIADKQIFKYPA---REDLMSRLWEMKPFGDAFREQSLEVRFHSDAINITGYI 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +PTFNR   +  Y F+NGR V     +  I++AY+E IP  R+PVVV+ +EI P  VDV
Sbjct: 244 SVPTFNRSRPDMIYTFVNGRPVHSTLFMGAIKSAYSEFIPRDRHPVVVMCMEILPGDVDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--TSSVLSKKMISSFHQDNAPKTHL 355
           NVHP+K  +RFRN   + + +++++  A++                +  F  DN P    
Sbjct: 304 NVHPSKLEVRFRNRKQVYSVVVEALATALSSNVYRELPPRTPVGGGLDHFAVDNTPVLDT 363

Query: 356 PKYAT---------------------SLTNTQEKLFLQENRLS-------TNDLLPSDDP 387
           P Y                          +  E       R +       +     +  P
Sbjct: 364 PHYGKVHDYGVAVGPKLSVQQTGGGGEFLSKPEHAIENPPRAAELFSFLGSGSSRRTTRP 423

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             S D++           LG A  Q+   YI+S+  D ++IVDQHAAHERL +E M++  
Sbjct: 424 VLSYDSEAHIVPLIEELPLGNAVCQLFDRYIVSRAGDHVIIVDQHAAHERLTYEYMKKVT 483

Query: 448 NSTKITSQTLLTPEIIDLLEGEC-ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +  Q LL PE+++L       L+ E+ E L + G+  E  G   +A+RE+PAIL  
Sbjct: 484 ADEGMKRQVLLMPELVELDNEYELELLGEYKEKLLKFGLVIEPMGSMVVAVREVPAILGV 543

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            ++  ++  I++ I++      ++++I+++  T+ACY SIRSGR ++  EMN LLR+ME 
Sbjct: 544 FDVKAMIAKIVESIVEVGDALFMREKIKHVCGTIACYSSIRSGRTLKLEEMNSLLRQMED 603

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            P+S QCNHGRPT++KL LS+I+KLF R
Sbjct: 604 TPHSGQCNHGRPTYVKLSLSEIDKLFER 631


>gi|317052213|ref|YP_004113329.1| DNA mismatch repair protein MutL [Desulfurispirillum indicum S5]
 gi|316947297|gb|ADU66773.1| DNA mismatch repair protein MutL [Desulfurispirillum indicum S5]
          Length = 595

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/603 (31%), Positives = 294/603 (48%), Gaps = 17/603 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI  L + +INQIAAGE++ERP   +KEL+EN+LDA++ RVE  I GGG    +ITD+G
Sbjct: 1   MKIGVLPDTVINQIAAGEVVERPVNVVKELVENALDADARRVEIAIEGGGIKRIRITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM   ++ + V+RH TSKI   DD + +H+ GFRGEALPSI +VS + + SR P   TG
Sbjct: 61  CGMARHDLMLCVERHATSKIRSFDDLTQLHSMGFRGEALPSIASVSRMHITSRQPDELTG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + I G +++ VR    NPGT VE+ DLF+ +PAR  FL++ Q E NLIT +++  A+A
Sbjct: 121 HCLHIEGGRMTEVREEGANPGTRVEIADLFYNVPARKKFLRTPQTEQNLITSLVQSFALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT-LQGYT 237
           +P+ +F++S     +++           ERI QV G +      E   + ++ T    Y 
Sbjct: 181 HPQTAFSYSVDGRAQFQFPP----ATIDERIRQVFGRENATALREGRSQQDDGTGFHLYL 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y F+N R V+D+ + + ++ AY   IP GR+P   L L IDP  VDV
Sbjct: 237 SRPDNTRSRRDSLYFFVNRRHVKDRLLGAWLQRAYRHLIPQGRHPFGALFLNIDPALVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K+ +RF +   +     Q+I++ +        S+    +  +   F       + 
Sbjct: 297 NVHPTKTEVRFFDIGALGRLFEQAIRQVLIEGETPFHSSPEPPAPAVPRGFPSTGGWSSS 356

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
            P        ++    +      ++       P       P+ ES A          Q  
Sbjct: 357 APHRNFGGQISEPAPAILPP---SHLPARHGQPASPYGETPLWESAAPSTADFQILGQFQ 413

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +I+    + L++VDQHAA ER+ FE++   +   ++  Q LL P  I L   E   + 
Sbjct: 414 DTFIVGIKDEELILVDQHAAMERINFEEISDLYADNRVEQQPLLFPHPIGLTPQEQLTLN 473

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---LQD 531
            H   L  +G   +     A  +   P  L  +     +R+I     +          + 
Sbjct: 474 THMPQLQAMGFTIDIIDDTACLVEA-PLDLPPQQAMDTIREICSRAGEEKDDQPESAQES 532

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
             + ++ TMAC+ S+++ + +   +M  LL+ + +      C HGRPT I      + K 
Sbjct: 533 FRQLVMKTMACHRSVKANKTLNHQQMEELLQRLFQCRQPYTCPHGRPTLISYSREQLWKQ 592

Query: 592 FGR 594
           F R
Sbjct: 593 FLR 595


>gi|209543574|ref|YP_002275803.1| DNA mismatch repair protein MutL [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531251|gb|ACI51188.1| DNA mismatch repair protein MutL [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 639

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 215/632 (34%), Positives = 342/632 (54%), Gaps = 47/632 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LSE+++N+IAAGE+IERP+ A+KEL+EN++D+ + R+  ++  GG    ++ D+G G
Sbjct: 14  IRRLSEQVVNRIAAGEVIERPAAALKELVENAIDSGARRIAVLLERGGIERIEVVDDGCG 73

Query: 63  MTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++ +AV+RHCTSK+ D+    I T GFRGEALPSIGA + LT+ SRP   ++  ++
Sbjct: 74  MTPDDLLLAVERHCTSKLRDETLVRIETLGFRGEALPSIGAAARLTVTSRPHGADSAWRV 133

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           ++ G  + +  P A  PGT V V DLFF  PAR  FLKS +VE       +RR+A++ P 
Sbjct: 134 SVEGGLVGAPAPCAGPPGTRVTVEDLFFATPARRKFLKSPRVEAGHADITVRRLALSVPD 193

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           V+F         + +       +   R++ ++  +  +  + +  +  ++ L G+   P+
Sbjct: 194 VAFRLQLDDRVVFDLPA----QDLESRVAAILESEGADGMLPVEGRRGDLVLDGFACGPS 249

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            +R  A+   + +NGR V D  + + +R AY   I  GR+ VV L L I P  VDVNVHP
Sbjct: 250 VHRATASGQILLVNGRPVVDPVLRTAVRVAYRHVIEHGRHAVVALSLTIPPDLVDVNVHP 309

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY--- 358
           AK+ +RF +P  +R  +I ++ +A+            +  +       A +   P     
Sbjct: 310 AKTELRFADPAAVRGLVIGALGRALGSGAGVA---GVRPGLLQSRPATASRIWYPSADAP 366

Query: 359 -------------------ATSLTNTQEKLFLQENRL-----------STNDLLPSDDPT 388
                                SL  T+  L     R+           +           
Sbjct: 367 SAGLAPAAAPAPAIFSAPGRDSLAGTRLDLGAPAARVLDDPPAAPPPDAGAAGGAGAGGP 426

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDF 447
            +   D    ++A  Y LG + AQ+   YI++ + DG LV+VDQHAAHERL  E++R  +
Sbjct: 427 DAAPPDAAILADAADYPLGASVAQVMGTYIVAVSGDGSLVLVDQHAAHERLTHERLRARY 486

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               + +Q LL PE++ L  G+  L++     L  LG++ E FG  A+ +R +PA+L   
Sbjct: 487 LDGTLRAQRLLLPEVVTLPRGQADLLLSFAGTLAALGVEIEPFGGGAVLVRALPALLGTD 546

Query: 508 NIPQLLRDIIDEIIDS-----STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +   LLRD+ DE+ +        T  L  R++ ++A MAC+GS+R+GR +   EM+ LLR
Sbjct: 547 DPAGLLRDMADELAEDDLADPGDTGALDGRLDAVIARMACHGSVRAGRSLTRAEMDALLR 606

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +ME+ P +  C+HGRPT++KL  +D+EKLFGR
Sbjct: 607 DMERTPRAGTCSHGRPTWLKLSRTDLEKLFGR 638


>gi|114775687|ref|ZP_01451255.1| DNA mismatch repair protein [Mariprofundus ferrooxydans PV-1]
 gi|114553798|gb|EAU56179.1| DNA mismatch repair protein [Mariprofundus ferrooxydans PV-1]
          Length = 611

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/605 (35%), Positives = 340/605 (56%), Gaps = 23/605 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++ NQIAAGE++ERP+ A+KELIENS+DA ++RV   IAG GK   ++ DNG+G
Sbjct: 15  IHILSPQVANQIAAGEVVERPASAMKELIENSIDAGATRVVVRIAGAGKKRIEVDDNGYG 74

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  +++QRH TSKI  S+D   I + GFRGEALPSI +VS   + +    +  G +
Sbjct: 75  MSAADAELSLQRHATSKIASSEDLHRIASHGFRGEALPSIASVSRFRMQT--ASDGEGVE 132

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G   + V+P A   GT +EV DLF   PARL+F+++++ E + I D  R +A+A P
Sbjct: 133 VRVDGGGETVVKPAAPRKGTRIEVLDLFLNTPARLHFMRTDKTEESAIVDTFRELALANP 192

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+         R++        +   R+  V+G+ F +N+VE   +   + +  + G+P
Sbjct: 193 GVAMRLELDARTRFEF----ALQDEQARVQAVMGQGFADNSVEQRIEHEGMQISAWLGLP 248

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           TF+  ++ +    +NGR ++DK +++ +R  Y + +   RYPV V+ LEIDP  VDVNVH
Sbjct: 249 TFHHRDSTRMMFLVNGRVIRDKQLIAALRAGYRDVMFHDRYPVAVVRLEIDPADVDVNVH 308

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +RF++P  +R  I+  ++  I + G S SS   +  + +  +     T LP +  
Sbjct: 309 PAKREVRFKSPQTVRAGIVACVRAGIERMGHSVSSTTGEPALQAMQRS----TGLPAFNG 364

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL------GIACAQIH 414
                    F   +  +T       + T    + P        Y        G   AQIH
Sbjct: 365 GQDGGGMPRFSSGDYRATGQQRMPAEMTRMLFSPPEVRESGQVYDATARLDLGYPLAQIH 424

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + YI++QT  G+V++DQHAAHER+ +EK++       I +Q LLTPE + L     A + 
Sbjct: 425 RCYILAQTDSGVVLIDQHAAHERMTYEKLKAQLAGGDIATQMLLTPEALTLDGEAAAWLH 484

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE-----IIDSSTTYTL 529
           +H   LH  G+  E  G  +  IR +PA+L  + + +++ ++++      +   + +   
Sbjct: 485 DHAVALHHFGVDIEAAGDQSFLIRSVPAMLGGEALVEMVTELVESCRLIGVDHEAGSSGG 544

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
              +E  L   AC GSI+SGR++   E   LLREME+ PN +QCNHGRPT+++L L++++
Sbjct: 545 ARVLERWLGNRACKGSIKSGRRLSHEEQLSLLREMERTPNIAQCNHGRPTYVRLSLNELD 604

Query: 590 KLFGR 594
           +LFGR
Sbjct: 605 RLFGR 609


>gi|292669798|ref|ZP_06603224.1| DNA mismatch repair protein MutL [Selenomonas noxia ATCC 43541]
 gi|292648595|gb|EFF66567.1| DNA mismatch repair protein MutL [Selenomonas noxia ATCC 43541]
          Length = 620

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 188/619 (30%), Positives = 297/619 (47%), Gaps = 32/619 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE++ERP+  +KEL+EN++DA ++ VE  I GGG SF ++TDNG 
Sbjct: 3   RIHVLDDTTINKIAAGEVVERPASVVKELVENAIDAGAAAVEVEIMGGGTSFIRVTDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +   A+ RH TSKI+   D   + T GFRGEALP+I +VS  +L++R P ++ G 
Sbjct: 63  GMARADAQTAILRHATSKIASVSDLQMVATLGFRGEALPTIASVSRFSLLTRQPADDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K   +       GT V V DLFF  PAR  FLK+   E   I+D + R+A++ 
Sbjct: 123 RVDILGGKTPEIEDAGCEIGTTVRVEDLFFNTPARKKFLKTNATEAGRISDFVIRLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITLQGYT 237
           P ++F F             + +G+    I  + G D     + L+      +I + GY 
Sbjct: 183 PDIAFRFINNNRLTLM---TAGDGSLRHAIESIYGGDAAAALIPLDFHDAEADIRITGYI 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+  R +       +NGRT+Q++ I   I   Y   +P   +P+ VL +E+  R +DV
Sbjct: 240 SKPSMIRSSRAWQTYIVNGRTIQNRAIAKAIDNVYRALVPKMGFPLAVLCIEVPQRTIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--------- 348
           NVHP K+ ++F +   I   + +S+  AI      T+++ +      FH +         
Sbjct: 300 NVHPQKTELKFEDEGRIFKAVYKSVLDAIRGAAGETAAIAAAVERPKFHYEAAPLNLAAP 359

Query: 349 -NAPKTHLPKYATSLTNTQE------------KLFLQENRLSTNDLLPSDDPTYSEDNDP 395
            +   +    Y+T     Q              L   ++ + T           +     
Sbjct: 360 AHPAGSSASSYSTPPMRPQTVHEAVQWAGQRVDLRTAQDAVGTERAEERSAFAAALSPSV 419

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
            ++++ T     +   Q+   YII+Q+   L I+DQHAAHER++F++     ++  I SQ
Sbjct: 420 GQDADRTIEGSLLPIGQVDLTYIIAQSAQTLYIIDQHAAHERILFDRF--SAHADGIPSQ 477

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            +L   I+     E   I E+ E   RLG   E  G     + E PA +        +R+
Sbjct: 478 QMLVHAILSFDAHEAQYIEENAELFDRLGFHLEPAGEREYRLTEAPADIPLDEAEATIRE 537

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           I+  + D         R   I ATMAC  +I++G ++   +M  LL E+   P    C H
Sbjct: 538 ILISLGDLHAATPAHLRQAGI-ATMACRAAIKAGEELSIRQMEILLDELRATPFPFTCPH 596

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT +K    D+ K+F R
Sbjct: 597 GRPTILKFDTHDLAKMFKR 615


>gi|171057810|ref|YP_001790159.1| DNA mismatch repair protein MutL [Leptothrix cholodnii SP-6]
 gi|170775255|gb|ACB33394.1| DNA mismatch repair protein MutL [Leptothrix cholodnii SP-6]
          Length = 651

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/641 (30%), Positives = 320/641 (49%), Gaps = 56/641 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +++I+QIAAGE+IERP   ++EL++N+LDA + ++   +A GG     + D+G G
Sbjct: 16  IRELPDELISQIAAGEVIERPGSVVRELLDNALDAGARQITLRLAAGGVRAILVEDDGAG 75

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A++RH TSKI+   D   + T GFRGEAL ++GAV+ L + SR   +    +
Sbjct: 76  IPADELPLALKRHATSKITSLHDLEQVGTMGFRGEALAALGAVAELAITSRTADSAHAMR 135

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     ++    P A + GT VEVR+LFF  PAR  FLK++  E     + +RR A+A P
Sbjct: 136 IDARSGEL---APAARSVGTTVEVRELFFATPARRKFLKTDATELAHCLEAVRRHALARP 192

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F          +       G   +R+  V+GE+FI  + E+  ++  + + G  G+P
Sbjct: 193 AVAFAVWHEGRLLEQWRA----GTPEQRVRDVLGEEFIAASREVTAQAGPLQVYGRVGLP 248

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R  A+  Y ++NGR V+D+ +   +R+AY + +   R P  VL +++ P +VDVNVH
Sbjct: 249 EAARARADLQYAYVNGRHVRDRLVAHGVRSAYEDVLHGSRQPSYVLFVDVPPERVDVNVH 308

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAIN-------------------------KKGISTSS 335
           P KS +RFR+   +   + +S++ A+                             I  + 
Sbjct: 309 PTKSEVRFRDSREVHQALRRSVEAALALPRLHEAGAAPADGPAAVEPTGAPPNAPIDRNP 368

Query: 336 VLSKKMISSFHQDNAPKTHLP-------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
            +     ++     A +   P       + A  L   +       +   +          
Sbjct: 369 DVWTGNPTASTASTAWRAPYPVQGSLALQQAAQLHAREMPPGFSGSPGYSTAPSGDPATA 428

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
           +    D         + LG A AQ+   Y++++   GLVIVD HAAHER+++E+++Q   
Sbjct: 429 FPLRTDHAAVDPQDEWPLGRALAQLGGAYVLAENRRGLVIVDMHAAHERIVYERLKQSLA 488

Query: 449 ST------------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           S              I +Q +L P        E A    H   L +LG+         +A
Sbjct: 489 SRRGAAEGNENGAPGIEAQPMLIPATFAATPTEIATAEVHAATLLQLGLDLTPLSAGVLA 548

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQ 553
           +R  PA L   +   L R ++ E+  S+T   +  +Q   + ILATMAC+G++R+ R++ 
Sbjct: 549 LRSRPAALRDADPVALARSVLAELGQSATGEASTLVQRAHDEILATMACHGAVRANRRLT 608

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             EMN LLR+ME    +  CNHGRPT+ ++ L +++ LF R
Sbjct: 609 LEEMNALLRDMETTDRADLCNHGRPTWRQVTLRELDTLFLR 649


>gi|110800749|ref|YP_695805.1| DNA mismatch repair protein [Clostridium perfringens ATCC 13124]
 gi|122958915|sp|Q0TRD5|MUTL_CLOP1 RecName: Full=DNA mismatch repair protein mutL
 gi|110675396|gb|ABG84383.1| DNA mismatch repair protein MutL [Clostridium perfringens ATCC
           13124]
          Length = 674

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 182/674 (27%), Positives = 312/674 (46%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GVHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARVDFKSKVSDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVRDLFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELVISGGEKESLTDCSMNRGTQIEVRDLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNP----TIIRNFIIQSIQK-----------------AINKKGISTSSVLS 338
           HP KS I+F++      ++ + +  ++++                 A+ ++ I  S    
Sbjct: 300 HPTKSEIKFKDERFIFKVVFDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDEE 359

Query: 339 KKMISSFHQ-------DNAPKTHLPKYATS----------------LTNTQEKLFLQENR 375
              +    +       ++  K  +  Y  S                    QE+ F   N 
Sbjct: 360 ISTLEKLKENINYKVSEDRKKEEIYSYNPSKDYEAKTEVNIPVDFLSKENQEESFSINNS 419

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATH-------------------------------- 403
           L  N+            +  + ++E                                   
Sbjct: 420 LENNNFKEGSAKREISYDPILIKNELKDKVSESTSESLERSDYKCNKNEYGNSIEEIIYR 479

Query: 404 ---YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              +       Q ++ YI+++    L ++DQHAAHE+++FEK   D    ++  Q L+ P
Sbjct: 480 EAKFPKLRVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKRVEIQPLMIP 539

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            ++ L   +     E+ E   + G K   FG N+I I E+P  L K N  +L+  +I+ +
Sbjct: 540 LVVTLPTEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEVPYFLDKLNPTELITSMINNL 599

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
               T  T++ +   I A+M+C  ++++   +  +EM  L+ ++    +   C HGRPT 
Sbjct: 600 KKMGTGETVEVKYNKI-ASMSCRAAVKANDVLSILEMENLIEDLRYINDPFHCPHGRPTI 658

Query: 581 IKLKLSDIEKLFGR 594
           IK    +++K F R
Sbjct: 659 IKFTSYELDKKFKR 672


>gi|168214982|ref|ZP_02640607.1| DNA mismatch repair protein MutL [Clostridium perfringens CPE str.
           F4969]
 gi|170713599|gb|EDT25781.1| DNA mismatch repair protein MutL [Clostridium perfringens CPE str.
           F4969]
          Length = 674

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 182/674 (27%), Positives = 311/674 (46%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GIHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARVDFKSKVSDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVRDLFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELIISGGEKESLTDCSMNRGTQIEVRDLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNP----TIIRNFIIQSIQK-----------------AINKKGISTSSVLS 338
           HP KS I+F++      ++ + +  ++++                 A+ ++ I  S    
Sbjct: 300 HPTKSEIKFKDERFIFKVVFDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDEE 359

Query: 339 KKMISSFHQ-------DNAPKTHLPKYATS----------------LTNTQEKLFLQENR 375
              +    +       ++  K  +  Y  S                    QE+ F   N 
Sbjct: 360 ISTLEKLKENINYKVSEDRKKEEIYSYNPSKDYEAKTEVNIPVDFLSKENQEESFSINNS 419

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATH-------------------------------- 403
           L  N+            +  + ++E                                   
Sbjct: 420 LENNNFKEGSAKREISYDPILIKNELKDKVSESTSESLERSDYKCNKNEYGNSIEEIIYR 479

Query: 404 ---YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              +       Q ++ YI+++    L ++DQHAAHE+++FEK   D    ++  Q L+ P
Sbjct: 480 EAKFPKLRVIGQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKRVEIQPLMIP 539

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            ++ L   +     E+ E   + G K   FG N+I I E+P  L K N  +L+  +I+ +
Sbjct: 540 LVVTLPTEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEVPYFLDKLNPTELITSMINNL 599

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
               T  T+  +   I A+M+C  ++++   +  +EM  L+ ++    +   C HGRPT 
Sbjct: 600 KKMGTGETVAVKYNKI-ASMSCRAAVKANDVLSILEMENLIEDLRYINDPFHCPHGRPTI 658

Query: 581 IKLKLSDIEKLFGR 594
           IK    +++K F R
Sbjct: 659 IKFTSYELDKKFKR 672


>gi|146329481|ref|YP_001210000.1| DNA mismatch repair protein MutL [Dichelobacter nodosus VCS1703A]
 gi|226723032|sp|A5EXM6|MUTL_DICNV RecName: Full=DNA mismatch repair protein mutL
 gi|146232951|gb|ABQ13929.1| DNA mismatch repair protein MutL [Dichelobacter nodosus VCS1703A]
          Length = 590

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 183/596 (30%), Positives = 305/596 (51%), Gaps = 13/596 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L   +INQIAAGE+IERP+  +KE++EN++DA ++R+   I   G    +++DNG 
Sbjct: 3   KILLLPPALINQIAAGEVIERPASVVKEIVENAIDAGATRLALEIEAAGSKLIRLSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A   H TSKI   +D   + + GFRGEAL SI ++S  TL S    ++   
Sbjct: 63  GIEKEDLALAFTTHATSKIRTLEDLEQVSSLGFRGEALASIASISKTTLTSCTQSSDHAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I+    +  ++ P A   GT +E+RDLF+  PAR  FL+S++ E   IT ++  +A++ 
Sbjct: 123 KISPHLNE--NITPAAHPQGTTIEIRDLFYNTPARKKFLRSDRTERYHITQLLAGIALSR 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
                T         +           E +  V+G++F+  ++E+  +   + L G+ G+
Sbjct: 181 APFVITLHEQDRKILEY----GGKTLKESLKSVMGDEFLAQSIEIQAEHEGMHLHGWVGL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+     ++ Y F+N R V DK +   I+ AY + I   R+P+ VL L +DP  VDVN 
Sbjct: 237 PTYTHQQTDKQYFFVNQRLVSDKLVAHAIKQAYEDMIHRQRHPIFVLFLTLDPALVDVNA 296

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  +RFR   +  +F+  S+ +A+       + +      S    ++   T  P + 
Sbjct: 297 HPSKREVRFRQAQLTHDFMFSSLHRALRNIQPRAAQLTPLSSASPKLPESTTATAQPHHK 356

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                      LQE +        +  P  +    P  E +  +  LG A  QIH  +I+
Sbjct: 357 MIPHTFARPPRLQETKAYYQ---WAQTPPPAVTPAPQPEIKKINLPLGQALGQIHGTFIV 413

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQD-FNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           ++   GLV+VD HAAHER+++E+ +       +I  Q LL P  + L   +   + +H  
Sbjct: 414 AENAQGLVVVDMHAAHERILYEQFKSVLKTQKQIPVQRLLLPLPLTLTPVQQDSLAQHGA 473

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG            +  +PA L   +   ++ D++ E+ +   +  LQ   E I+A
Sbjct: 474 WLKTLGFDWT-INDKEFILLTVPARLKNSDCISIIGDVLQELSEFPKSTQLQRAQEQIIA 532

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            M C+ ++R+   +   EMN+LLR++E  P + QCNHGRPT+I+L  + ++ LF R
Sbjct: 533 NMCCHQAVRAHDLLSISEMNQLLRDLETTPAAGQCNHGRPTWIQLDATQLDALFLR 588


>gi|170017651|ref|YP_001728570.1| DNA mismatch repair ATPase [Leuconostoc citreum KM20]
 gi|238688974|sp|B1N024|MUTL_LEUCK RecName: Full=DNA mismatch repair protein mutL
 gi|169804508|gb|ACA83126.1| DNA mismatch repair enzyme (predicted ATPase) [Leuconostoc citreum
           KM20]
          Length = 668

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 181/654 (27%), Positives = 308/654 (47%), Gaps = 65/654 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + NQIAAGE+IERP+  +KEL+EN++DA +++++ V+   G++F ++ DNG 
Sbjct: 3   KIHELSNLLANQIAAGEVIERPASVVKELVENAIDAGATQIDIVVENAGETFIRVVDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+A  RH TSKI+D  D  NI + GFRGEALPSI A++ + L ++  +  TG 
Sbjct: 63  GIDPVDVPLAFTRHATSKITDRHDLFNIVSLGFRGEALPSIAAIADVELRTKTTETTTGL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G K  S  P     GT++ VRDLF+  PARL +LK  Q E + I D+I R+A++Y
Sbjct: 123 NYHIKGGKEISATPANGRRGTVITVRDLFYNTPARLKYLKKHQTELSKIVDIINRLALSY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++FT S        +   + NGN  + I+ + G D     + +  ++++  + G+  +
Sbjct: 183 TGIAFTVSADGR---SLLRTTGNGNQQQVIAGIYGRDNAQKMLAIAGENDDFNITGFISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG+     V +NGR +++  + + +   Y   + +GR+P+ V+ +  +P  +DVNV
Sbjct: 240 PELTRGSREYLTVLVNGRYIKNFAVSNAVIRGYGSKLMVGRFPMGVININTNPLLIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HP KS IR    T +   ++ +I+  + ++ +   +                        
Sbjct: 300 HPQKSEIRLSKETELAELLVTTIKNRLAEENLIPDAYETLYGQQNKQQNTQNTQNTFTPK 359

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLT-------------------------------N 364
                   S    NA K        S +                                
Sbjct: 360 APWIAAEDSMDGHNAEKMSSQPIRRSPSLVTPVEITKREELSSDRVLTFTQKYTNELPQP 419

Query: 365 TQEKLFLQENRLSTNDLLPSDDP----TYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
             E   + E +++   +          ++S++  P+ E + T +       Q+H  ++ +
Sbjct: 420 VFETDNVVEQQVTEPTVTYQSQYSETGSHSQETLPLSEQKPTGFPALDYIGQMHGTFLFA 479

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           Q+ D   ++DQHAA ER+ +E  R+         Q LL P  ID    E   I +H  +L
Sbjct: 480 QSEDSFFLIDQHAAQERVNYEFYREQIGQVTNDQQRLLVPITIDYSVSEMLAIADHQPEL 539

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
             LG++ E FG   + IRE P    K    + +R++ D ++      T+    E     M
Sbjct: 540 MALGLRLEPFGATTMIIREHPTWFEKGQEEETVREMTDWLLRDGQ-LTVAQFREKAAIMM 598

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C  +IR+   +      +LL  +    N   C HGRP   +  L+++EK+F R
Sbjct: 599 SCKRAIRANMHLSDTAARQLLAHLSMAENPYNCPHGRPVLTQFTLTEMEKMFKR 652


>gi|302391924|ref|YP_003827744.1| DNA mismatch repair protein MutL [Acetohalobium arabaticum DSM
           5501]
 gi|302204001|gb|ADL12679.1| DNA mismatch repair protein MutL [Acetohalobium arabaticum DSM
           5501]
          Length = 660

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 169/664 (25%), Positives = 305/664 (45%), Gaps = 75/664 (11%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I+KL ++++++IAAGE+IERP+  +KEL+ENS+DA+S ++E  +  GGK   Q+ D
Sbjct: 1   MPKQIKKLPQEVVSKIAAGEVIERPASVVKELVENSIDADSDKIEIKVNNGGKDLIQVID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+GMT E+  +A++RH TSKI++  D  +I + GFRGEALPSI A+S LT+ +R     
Sbjct: 61  TGYGMTREDAELALERHATSKITEANDLFSIRSLGFRGEALPSIAAISRLTMKTRTEDKL 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  + I+G +I  +       GT + V+DLF+  P R  +LK+   E   I+D++ R+A
Sbjct: 121 GGTLVKINGGEIKKIEDAGCPIGTNIIVKDLFYNTPVRYKYLKTSATEIRRISDIVNRLA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +AYP+++F  S  +    K+     NGN  + I  V G++   + + ++ +   + + GY
Sbjct: 181 LAYPEITFKLSHNQK---KVLETPGNGNLMDTILSVYGKEVAKSMIAVDYEDKYMQVSGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P  +R +      FIN R ++ + +   I  AY   +  GR+P+ +L ++++P  VD
Sbjct: 238 VSKPNISRASKKHQSFFINRRYIKSRALSEAISKAYHTLLAKGRHPIAILTIKLNPVLVD 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  + F     + + +   +++A++   +     L+ K  ++  + ++  +   
Sbjct: 298 VNVHPTKMEVNFSREKEVASVLQNGVKEALSNADLIPEVKLNSKDSTAVSKKDSQDSKQQ 357

Query: 357 K------------------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           +                        +TQ+     +++    D +     +    N     
Sbjct: 358 QELELTKKRKFSSEKNKKKSQKKEKSTQKTTNDNQDKSIQTDQINETKESSDRINRKESA 417

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E  +     +       +   + ++     ++ +   +       +D  +  ++S   L
Sbjct: 418 EELKNGIEKQSKQA--DYFQKREQSNEKEKKNKESVAIKESQSDYNKDDATKSLSSFLPL 475

Query: 459 TPEIIDL---------------LEGECALIMEHDEDLHR--------------------- 482
                                    E  L  E  E   +                     
Sbjct: 476 GQIHNTYIIAQGEDGFYIVDQHAAHERILYNELMEKFKQAEIKSQSLLMPVRLELTNPEI 535

Query: 483 ------------LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
                       LG + E FG     +R +P +L K +I +L  DIID ++D        
Sbjct: 536 EILEENSEHLKNLGFEFEAFGGQTYLVRAVPNLLHKLDIKELCLDIIDNLLDKGKIQEPT 595

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           + IE++L  M+C G+I+SG+ +   EM  LL+++E++ N   C HGRPT I     +++K
Sbjct: 596 EIIEDLLVIMSCRGAIKSGKSLVPGEMESLLQQLEESGNQHTCPHGRPTIIHFSKKELDK 655

Query: 591 LFGR 594
            F R
Sbjct: 656 KFKR 659


>gi|225018515|ref|ZP_03707707.1| hypothetical protein CLOSTMETH_02462 [Clostridium methylpentosum
           DSM 5476]
 gi|224948716|gb|EEG29925.1| hypothetical protein CLOSTMETH_02462 [Clostridium methylpentosum
           DSM 5476]
          Length = 645

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/651 (28%), Positives = 317/651 (48%), Gaps = 63/651 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L + +   IAAGE+IERP+  +KEL+ENS+D+ ++ V   I  GGK   +ITDN
Sbjct: 1   MPQIHLLDKAVSELIAAGEVIERPASIVKELLENSIDSGATSVTVEIKTGGKQLIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G++ +++P A  RH TSKI    D  +I T GFRGEAL SI AVS + L+++  +   
Sbjct: 61  GCGISPDDVPKAFLRHATSKIQTEPDLEHIATLGFRGEALASICAVSKIELLTKTAEEQF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  ISG +   +       GT + VR++F+ +PARL FLK +  E N I  ++ ++A+
Sbjct: 121 GTRYTISGGEGGELEETGCPDGTTILVREIFYDVPARLKFLKKDVTEGNAIQSIVDKIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P++S  F        ++     NG+    I  V G +F +  + ++ K+    + G+ 
Sbjct: 181 SHPEISIKFLRDGK---RVLNTPGNGDRFSVIHAVFGREFASTLMPVDYKAGSFPVNGFA 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P  +R N +  + FINGR V+ K   + +  AY  +I +G++P  VL LE+    VDV
Sbjct: 238 SVPMKSRANRSMQHFFINGRYVKSKTCCTALEEAYKGSIMVGKFPACVLNLELPFEMVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHP+K  +RF +   +   +  +++ AI ++                            
Sbjct: 298 NVHPSKIEVRFTDERAVFEAVYFAVKSAIAQQSRLSAVPRETEIVKPHVERVLSQPQELD 357

Query: 331 ------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL------- 371
                       IS S+  S+   S F+     K  +P+  +S +  +++ F        
Sbjct: 358 QMGLGVRPTPQPISVSAPPSQLRDSGFNYQVRKKEPVPQKESSFSFLKKESFAPAGNTAG 417

Query: 372 ---QENRLSTNDLLPSDDPTYSE-----DNDPVEESEATHYQLGIACAQIHQNYIISQTT 423
                 RL    +  + +   S            + E     +     ++ + YI+++  
Sbjct: 418 QRSAPKRLEDRIIPETPEMPKSSEVVLTKEQSKHQPEKEARPVYRIIGELFKTYILAEVE 477

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D LV+VD+HAAHER+++EK++    +  +  Q LL P  +     E   I+ + E L RL
Sbjct: 478 DQLVMVDKHAAHERILYEKLK--QEAGNLDRQVLLAPVSVTCSVEEHECILANAETLERL 535

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G  AE FG +++ IREIP +L ++ +  +  DI++ ++ +    +    +E +  +MAC 
Sbjct: 536 GFLAEDFGGSSVLIREIPMVLDREAVEDVFGDILNNLMKNKRDVS-PQVLEELYHSMACK 594

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +I++       E+ RL   +  +     C HGRP  I +     E+ FGR
Sbjct: 595 AAIKANDVNSPAELERLFERVYFDEAIRYCPHGRPVAITMTKERFERQFGR 645


>gi|126654327|ref|ZP_01726093.1| DNA mismatch repair protein [Bacillus sp. B14905]
 gi|126589230|gb|EAZ83394.1| DNA mismatch repair protein [Bacillus sp. B14905]
          Length = 614

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 174/617 (28%), Positives = 288/617 (46%), Gaps = 35/617 (5%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
            E + N+IAAGE++ERP+  +KEL+EN++DA S+ ++  +   G +  Q+ DNG GM  E
Sbjct: 2   DEWLSNKIAAGEVVERPASVVKELVENAIDAGSTSIDVFLLEAGLTSIQVIDNGSGMDEE 61

Query: 67  EIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
           +  M+  RH TSKI    D   I T GFRGEAL SI +VS +TL++      +G  + + 
Sbjct: 62  DAIMSFSRHATSKIHQEHDLFRIRTLGFRGEALASIASVSKMTLIT--SNGESGTHLELE 119

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           G  + + +P  +  GT + V  LFF  PARL ++K+ Q E     D++ R+A++ P+++F
Sbjct: 120 GGHMLTHKPGPLRKGTDLTVSQLFFNTPARLKYMKTIQTELGHTIDLMNRLALSNPQIAF 179

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                      +   +  G+  + ++ + G       V    +S++  + GY  +P   R
Sbjct: 180 RLLHNGQI---LLQTNGRGDVQQVLAAIYGVHNAKKMVSFQGESHDYRISGYVTLPEVTR 236

Query: 245 GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKS 304
            + N   +F+NGR V+   +   I  AY   +P+ R+P+VVL +E DP   DVNVHPAK 
Sbjct: 237 ASKNYMSLFVNGRWVKHYLVQKAIVDAYHTYLPIERFPIVVLYIEGDPFLTDVNVHPAKH 296

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY------ 358
            IR      +   I  +I++ I            +K++    +        P+       
Sbjct: 297 QIRLSKELELLKLIEDTIRERIRSVIRVPQMEKKEKIVKPATEQLNIWKPAPQIDVEKMN 356

Query: 359 ---------ATSLTNTQEKLFLQENRLST-----------NDLLPSDDPTYSEDNDPVEE 398
                     T   N +E     E   +                  +     +  + V E
Sbjct: 357 AIVEKLYDVQTVQENNRETTVEPEPVSTIVEDYAQPIQPLQAEEIEEVTVVEQHEELVNE 416

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTL 457
           +    +       QIH  YI++Q  DG  ++DQHAA ER+ +E  R+          Q L
Sbjct: 417 TAKEPFPELEVVGQIHGTYIVAQMEDGFYLIDQHAAQERIKYEFFREKVGQVNPHERQAL 476

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P        E  L+ EH  +L  +G+  E FG ++  +RE P+   K    +++ D+I
Sbjct: 477 LLPLTFHYAADEALLLREHKHELEAVGVFLEEFGQSSFVVREHPSWFPKGEEQEIIEDLI 536

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           ++++ +     ++   E     M+C  SI++   +   +M  LLR++ K  N   C HGR
Sbjct: 537 EQVLTTKKAD-VKKLREAAAIMMSCKKSIKANYYLTKEQMEILLRDLRKADNPFTCPHGR 595

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I     ++EK+F R
Sbjct: 596 PVLIHFTSYEVEKMFKR 612


>gi|325106151|ref|YP_004275805.1| DNA mismatch repair protein MutL [Pedobacter saltans DSM 12145]
 gi|324974999|gb|ADY53983.1| DNA mismatch repair protein MutL [Pedobacter saltans DSM 12145]
          Length = 625

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/623 (29%), Positives = 324/623 (52%), Gaps = 38/623 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KELIENS+DA + +++ +I   GK+  QI DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVVQRPASAVKELIENSIDAGADKIQLIIKDAGKTLIQIIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M ++RH TSKI   +D   I T GFRGEA+ SI A++ + + ++  ++  G  
Sbjct: 65  MSPTDARMCLERHATSKIRKAEDLFAIRTMGFRGEAMASIAAIAQMEIKTKRHEDELGNS 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G ++ +  P A   GT + V++LFF IPAR NFLKS  VE   I D  +R+A+A+P
Sbjct: 125 IIVEGSEVINQEPCAGANGTSISVKNLFFNIPARRNFLKSNAVEMRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ FT        Y +          +RI  ++G ++    V ++E ++ I L+G+ G P
Sbjct: 185 EIHFTLHHDGQEVYHLP----QATLKQRIIHLLGNNYNERLVPVDEDTSIIQLKGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +F +      + F+N R ++D ++   +  AY E +    +P+ VL ++IDP ++D+NVH
Sbjct: 241 SFAKKTRGDQFFFVNKRFIKDPYLNHAVMAAYEELLTEDSFPLYVLFIDIDPSRIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----------------KMIS 343
           P K+ I++++   I   I  ++++++ K  I+ +    +                     
Sbjct: 301 PTKTEIKYQDDKAIYAIIRSAVKRSLGKYNITPTLDFDQETGFERMITHKPLDEITPPQI 360

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN-------------DLLPSDDPTYS 390
           SF+ +  P  +      S ++    +  + N  S N             + +P D    +
Sbjct: 361 SFNPNFNPFGNEVSTVKSKSDNFRAIAERTNSGSGNWSTLYNIVEQEKAEQIPLDLGVTT 420

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
             +   E+S  +         QIHQ YIISQ   G +++DQ AAHER+++EK  +   S 
Sbjct: 421 TVSLNQEDSVESPVADNRNLFQIHQKYIISQIKSGFMLIDQQAAHERILYEKFLEQLESH 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK-NI 509
           K  SQ  L P+ I L   + AL+ E     H LG +   FG N + I  +PA + +  N+
Sbjct: 481 KGLSQQSLFPQTITLNAMDFALVNELLPSFHALGFQIREFGKNTLVIEGVPADIPENHNL 540

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +++  +I+   ++ +T  L D+ +N+  T+A   SI++G  ++  EMN L+ ++     
Sbjct: 541 AEMMEKLIEGFKNNYSTLKL-DKRDNLARTLAKNASIKAGTVLKQEEMNNLIDQLFACNI 599

Query: 570 SSQCNHGRPTFIKLKLSDIEKLF 592
                 G+   IK+ L ++ + F
Sbjct: 600 PGISISGKQIIIKITLDELAERF 622


>gi|332665286|ref|YP_004448074.1| DNA mismatch repair protein mutL [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334100|gb|AEE51201.1| DNA mismatch repair protein mutL [Haliscomenobacter hydrossis DSM
           1100]
          Length = 634

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 181/635 (28%), Positives = 307/635 (48%), Gaps = 49/635 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I NQIAAGE+I+RP+  +KEL+ENS+DA S  ++ ++   G++  Q+ D+G G
Sbjct: 5   IQLLPDSIANQIAAGEVIQRPASVVKELMENSVDAGSKNIKLIVKDAGRTLIQVIDDGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI   DD   I T GFRGEAL SI +V+ + L +R   +  G  
Sbjct: 65  MSETDARMSFERHATSKIRSADDLFAIRTMGFRGEALASIASVAQVELRTRRHASEVGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G K+ S  P     GT   V++LFF +PAR NFLK+  VE   I D   R+ +A  
Sbjct: 125 IQAEGSKVKSQEPCQTAAGTSFAVKNLFFNVPARRNFLKANTVEFRHILDEFERIVLANA 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F+     S  + +      GN  +RI  V G       V + E+++ I ++G+ G P
Sbjct: 185 DVFFSLHHNGSEVFHLPP----GNLRQRILGVFGNAVNTRLVPVVEETDIIQIKGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + Y F+N R ++  ++   + +AY E +P   YP  +L L+IDP ++DVNVH
Sbjct: 241 EFAKKVRGEQYFFVNSRFIKSSYLHHAVMSAYEEVLPKEMYPFYLLFLDIDPARIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------ISSFHQDNAPKTH 354
           P K  I+F +  ++ N++  +++  + + G+  S    ++       +SS    + P T 
Sbjct: 301 PTKQEIKFEDDRLVYNYLKVAVRHGLGQHGVMPSLDFEQETSLQLPYLSSKMDQDKPFTT 360

Query: 355 LPKYATSLTNTQEKLFL-----------QENRLSTNDLLPSDDPTYSEDNDPVE------ 397
            P+ +++  + + K F            +EN L    LL  D    SE +   E      
Sbjct: 361 PPRNSSAWQSDEPKAFNSGKEDHAEQHREENNLRNWQLLYKDLGGASEGDGMGEGDDASG 420

Query: 398 -------------------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                               +E    +      QIH  YI+SQ   G +++DQ AAHER+
Sbjct: 421 MQTMTIGSSWAQDEATTGPSTEEPFGKQQKVPYQIHGTYIVSQIKSGYMLIDQQAAHERI 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           ++E      N  +  +Q  L P  ++    +  ++ +   D+  LG   + FG N+  + 
Sbjct: 481 LYENYLSMMNENRAATQQQLFPITLNFSPNDAEILKDLLPDIQLLGFDVQEFGGNSFVVN 540

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +P  L+ K   + + + + E         L  R E++  +MA   +++ G+ +  +EM 
Sbjct: 541 GLPVELAGKQNERSVMETLLEQHKIGLELQLNTR-ESLARSMARSAAVKRGQLLNEVEMQ 599

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            L+ ++       +   G+  F+  +L D++K F 
Sbjct: 600 ALMDQLFACSMPYRSPFGKKCFVTYELEDLQKHFE 634


>gi|58584653|ref|YP_198226.1| DNA mismatch repair ATPase MutL [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|81311642|sp|Q5GSP0|MUTL_WOLTR RecName: Full=DNA mismatch repair protein mutL
 gi|58418969|gb|AAW70984.1| DNA mismatch repair enzyme MutL, predicted ATPase [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 628

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 224/634 (35%), Positives = 347/634 (54%), Gaps = 47/634 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG +   ITD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSSEIEIKIESGGCNLITITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A  RH TSK+SD +   I   GFRGEAL SI AVS + L S+    +   
Sbjct: 61  GGIEKSDLELAFMRHATSKLSDSELIEIKHLGFRGEALSSIAAVSRIKLSSKANGASEAW 120

Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I+  G EKI  + P ++  GT +EVRDLFF  P RL FLK+E+ E   I D++  +A+ 
Sbjct: 121 SISYEGGEKIGELIPYSLPQGTHIEVRDLFFATPNRLKFLKTERAEIQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K    +   +   R+ +V  E+F +N++E+NE+ + + L G+  
Sbjct: 181 NYSIGFTLTSGSKKPLKY---AKQTSLFSRLCEV-EEEFQDNSLEINEEEDGVRLTGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NRG ++  Y F+NGR ++D  ++S IR AY + IP  RYP   L LEI   Q+DVN
Sbjct: 237 KPTVNRGKSDMIYTFVNGRPIKDNLLVSAIRYAYHDFIPSNRYPFATLHLEIPYDQIDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------ISSFH 346
           VHP KS +RF+N  +I   + + + KA++ +  +++     +                  
Sbjct: 297 VHPNKSEVRFQNKRLIYEIVRRGLIKALSTRTGNSAVSNIDRSRCQGIGKETSGLPFDVS 356

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH--- 403
           +      H+    +  T ++ +L+ +      N L+   +       D  E S       
Sbjct: 357 ESQGNDNHINNGKSRETKSERELYERRPNPFENRLMKESNSPSVGKKDLSERSVLFDSGI 416

Query: 404 ----------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                                 + LG A  Q++  YII++    L+IVDQHAAHERL++E
Sbjct: 417 QKSLSQAKTVVLEREQIDLIENHPLGFARCQVYNTYIIAEARGKLIIVDQHAAHERLVYE 476

Query: 442 KMRQDFNSTKITSQTLLTPEIIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
            ++     + I  Q LL  E++++  +    ++  + + L  +G   +    N + ++EI
Sbjct: 477 CLK---QKSSIKRQKLLLSEVVEIKNQAGMEMVEVYKDKLFEMGFDIQINSENKVIVKEI 533

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PAIL   ++ ++L DI+D +++      ++D++  ILAT+AC+GSIR+GR M+  EMN L
Sbjct: 534 PAILGTIDVKEMLIDIVDRLMEIEDMLPIEDKVNKILATIACHGSIRAGRTMKLEEMNVL 593

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LR+ME+ P S QCNHGRPT I++KLSDIEKLF R
Sbjct: 594 LRQMEETPYSGQCNHGRPTHIEMKLSDIEKLFER 627


>gi|299138191|ref|ZP_07031371.1| DNA mismatch repair protein MutL [Acidobacterium sp. MP5ACTX8]
 gi|298600121|gb|EFI56279.1| DNA mismatch repair protein MutL [Acidobacterium sp. MP5ACTX8]
          Length = 654

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 192/656 (29%), Positives = 314/656 (47%), Gaps = 68/656 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR LS+++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+   I  GG+   +I DNG 
Sbjct: 3   KIRVLSDQVANQIAAGEVVERPASVVKELLENSLDAGATRIRLEIEAGGRKLIRIVDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSK+  SDD  +I T GFRGEALPSI +V+ ++L +R  ++  G 
Sbjct: 63  GMGRDDALLAFERHATSKLRSSDDLLSIATLGFRGEALPSIASVARVSLETRAVEDEVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I+G  +  V    +  GT + VRDLFF  PAR  FL+SEQ E   +  ++   A+A+
Sbjct: 123 MLEIAGGNLLRVEDAGLPAGTTIAVRDLFFNTPARRKFLRSEQTELGHVAALVTHYALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE---------------- 223
           P   F      S+   +       N  ER+ Q+ G +   + +                 
Sbjct: 183 PDKHFEL---HSSTQSLLVAPAVANAGERLYQIFGRETFESLIPVAAELDFSRAGLPEPP 239

Query: 224 --------LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                      +   I L G+   P   + N N  YVF+NGR ++D+ IL     AY   
Sbjct: 240 PWKRGEDYEAPEPGFIRLTGFVSKPELQKLNRNSIYVFVNGRLIRDRLILHAFTEAYRNI 299

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           IP   YPVV+L LE+ P++VDVNVHPAK+ +RFR  + + +F+  +++ A  +     ++
Sbjct: 300 IPPTSYPVVLLFLEMPPQEVDVNVHPAKTEVRFRQGSFVHDFVRDAVRTA--QMNARPAA 357

Query: 336 VLSKKMISSFH------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL- 382
                + S+                  P    P           + F++    ++ DLL 
Sbjct: 358 SFFAALNSAPSLASSLLVDVSPLPGVDPAVFAPNGGLQALVAGSESFIEPQDTASFDLLA 417

Query: 383 ------------------------PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                                                  +             Q+  ++I
Sbjct: 418 PVVPASPGRLSFEGSGMSVGYDEPAQSGIVEGAGGTSEHQPTLNSLATLKPLGQLRDSFI 477

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           ++   +GL IVDQH AHER++FEK+ ++    ++  Q LL P +++LL  +        E
Sbjct: 478 LATNEEGLWIVDQHVAHERILFEKILRERKVEQVQRQRLLMPVLVELLPEQMVTFAAIAE 537

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L R G +AE FGP  +A++  P  L  + + ++L +++            + R   I A
Sbjct: 538 ELERNGFEAEPFGPRTLAVKATPVGLEGRELERMLEEVLAVTEREQQVENEEARRTRIAA 597

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++AC+ +I+    ++  +++ LL E+ K  + + C HGRP  ++  L DI++ F R
Sbjct: 598 SIACHAAIKINMPLEPAKIDWLLTELGKTEHPTSCPHGRPIALRYSLKDIQRAFQR 653


>gi|167630633|ref|YP_001681132.1| DNA mismatch repair protein mutl [Heliobacterium modesticaldum
           Ice1]
 gi|238687867|sp|B0TB10|MUTL_HELMI RecName: Full=DNA mismatch repair protein mutL
 gi|167593373|gb|ABZ85121.1| DNA mismatch repair protein mutl [Heliobacterium modesticaldum
           Ice1]
          Length = 660

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 192/665 (28%), Positives = 304/665 (45%), Gaps = 82/665 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L    +NQIAAGE++ERP+  +KEL+EN+LDA ++R++  +A GGK   +I DNG G
Sbjct: 4   IQRLDTHTVNQIAAGEVVERPASIVKELLENALDAGATRIDITLAEGGKKLIRIIDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M +++  + V+RH TSKI   +D   + T GFRGEALPSI AVS L + +R   +N   +
Sbjct: 64  MAADDAELCVERHATSKIRRAEDLMAVQTLGFRGEALPSIAAVSRLVITTRRSIDNQATR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G +   +  V   PGT V+V DLFF  PAR  FL+S   E +   +VI R+A AYP
Sbjct: 124 VRIDGGERYPIEAVGAPPGTTVQVEDLFFNTPARRKFLRSATAEGSACAEVIWRLAAAYP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE-LNEKSNEITLQGYTGI 239
            V+F+ +  K   ++      N    E +S V G + I+  +       +  TL+G+ G 
Sbjct: 184 HVAFSLTQGKQISFR---SPGNNKPLETLSAVFGREIISFLLPLSAVAPDGWTLRGFIGS 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ +R N N    F+N R V+ + +   +  AY   +P GR+P  VL LE+ P+ +DVN 
Sbjct: 241 PSLHRNNRNHQNWFVNQRWVRCRILSQAVEEAYHGMLPGGRFPFFVLHLELPPQTIDVNS 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL---- 355
           HP K  I+F     + +F  Q++ + +  + +S         ++SF  D AP T      
Sbjct: 301 HPTKQEIKFDRERDVADFTRQTVLQTLRSRPLSRPL----WSLASFQSDGAPPTQQLSSD 356

Query: 356 ---------------------------------PKYATSLTNTQEKLFLQENRLSTNDLL 382
                                            P+ +  +       F Q   L      
Sbjct: 357 VREKAEGERWRQDRILLYREGALSPTKQELPKSPERSERVERLNSGDFGQGRALYRESSQ 416

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN----YIISQTTDGLVIVD-------- 430
                   E  +  E    +  Q       +H+         Q  +GLV  D        
Sbjct: 417 ELPTDCLRESLEETESQSESIRQCLSENLPLHRQEPRAEKECQPVEGLVAGDVAEWIPIG 476

Query: 431 -------------------QHAAHERLIFEKMRQDF--NSTKITSQTLLTPEIIDLLEGE 469
                              QHAAHER+++  +++ +   +    SQ LL P  + L   E
Sbjct: 477 QFRRSYILAEGGDTLYLVDQHAAHERVLYHGLKERYLNEAGVCASQQLLLPVTVTLTPAE 536

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
               ME   +L   G+  E FG N + IR +P  L         RDI++ ++        
Sbjct: 537 FQGAMEAIAELRDAGLIVEHFGGNTLLIRAVPVGLPPGEEKGFFRDILNSLM--KGLRDR 594

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           +      L++MAC G++++G+ M   EM  LL+++ +      C HGRP  +++   ++E
Sbjct: 595 EVIRRAALSSMACRGAVKAGQVMSHAEMGALLQQLARLEGVDTCPHGRPYLLRIDRRELE 654

Query: 590 KLFGR 594
           + F R
Sbjct: 655 RRFYR 659


>gi|116626082|ref|YP_828238.1| DNA mismatch repair protein MutL [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251851|sp|Q01QW7|MUTL_SOLUE RecName: Full=DNA mismatch repair protein mutL
 gi|116229244|gb|ABJ87953.1| DNA mismatch repair protein MutL [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 660

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/662 (29%), Positives = 321/662 (48%), Gaps = 74/662 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L +++ N+IAAGE++ERP+  +KEL+ENSLDA ++ V   +  GG+   +I D+GF
Sbjct: 3   RIRILPDQVANKIAAGEVVERPASVVKELLENSLDAGATEVRVEVEAGGRRLIRIVDDGF 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSK+ D  D  +I T GFRGEALPSI +VS L L +R  +  TG 
Sbjct: 63  GMLRDDALLAFERHATSKLRDVKDLLSIATLGFRGEALPSIASVSRLLLETRSMEEPTGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I+G K+      A+  GT++ VRDLF+ +PAR  FL++E  E   I  ++   ++A+
Sbjct: 123 RIEIAGGKMLRCEEAALGGGTVITVRDLFYNVPARRKFLRTEPTELAHIASLVTHYSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE---------------- 223
           P  SF  ST      ++   +   +  ER+ QV G   ++  VE                
Sbjct: 183 PDKSFRLSTGP---TELLGVTPVASMKERVYQVFGSQILDELVEIGVRERDLFLPPPSVP 239

Query: 224 -------------LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                         +       L G+   P   + N N  Y+F+NGR ++D+ +L  + +
Sbjct: 240 PSQAIAEYRSTEPEDPPFRRFRLTGFFSRPQIQKSNRNSIYIFVNGRLIRDRLVLHALSS 299

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           AY   +P   YP  +L LE D  +VDVNVHP+K+ +RFR+ + + +FI  SI++ +    
Sbjct: 300 AYHNLMPASAYPFALLFLECDAEEVDVNVHPSKTEVRFRHGSFLHDFIRDSIRERL--ME 357

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ-------EKLFLQENRLSTNDLLP 383
              +   S   +++       +    +++  L N Q       E     E  +   +L  
Sbjct: 358 SRPAPTFSPVPMAAPPAQQGAQLPYSEFSQMLENEQQAASEMAEPAIAGEPAMPEFNLRA 417

Query: 384 SDDPTYSEDND-------------------------------PVEESEATHYQLGIACAQ 412
           +  PT   D                                 P  E   +         Q
Sbjct: 418 TAPPTPRLDFSAPPIEVAPGPPPSGKLSRRLDMHGEFPLEAIPAPEMSLSALSDLRPLGQ 477

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           IH+++II+   DGL I+DQH AHER++FE++ +   + ++ +Q LL P I+ L   +   
Sbjct: 478 IHESFIIAAGRDGLWIIDQHVAHERILFEQVLKQRAAGRVETQRLLMPMILQLSAEQQID 537

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
                ++LH  G + E FG   IA++  PA +  +++ ++L +I++   +   T +L D 
Sbjct: 538 YARIADELHASGFETEPFGNRTIAVKAAPAAVGPQDLERILFEILEIAENEMRTNSLDDL 597

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
             NI A++AC  +I+   ++   +M  LLR +        C HGRP  +     +I K F
Sbjct: 598 RRNICASIACRAAIKINMRLDLAKMEWLLRALAATDCPMSCPHGRPIAMHYSTREILKAF 657

Query: 593 GR 594
            R
Sbjct: 658 HR 659


>gi|218961589|ref|YP_001741364.1| DNA mismatch repair protein MutL [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730246|emb|CAO81158.1| DNA mismatch repair protein MutL [Candidatus Cloacamonas
           acidaminovorans]
          Length = 630

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 194/633 (30%), Positives = 306/633 (48%), Gaps = 44/633 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L+E + N+IAAGE+IERP+  +KEL+EN++DA +  +   I  GGK   ++ DN
Sbjct: 1   MPNIHILAEDVRNKIAAGEVIERPASVVKELVENAIDAGADSIIVAIENGGKDLIRVIDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM +++  +A +RH TSKI   +D ++I + GFRGEALPSI +VS L L++R  +   
Sbjct: 61  GCGMNADDAMLAFERHSTSKIKTVEDITHIGSLGFRGEALPSIASVSKLHLVTRTAEEEM 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
              +  +  K+++V   + N GT V VR LF  +PAR  FLK+  VE   I   I   A+
Sbjct: 121 ATIVEYANGKLNNVTKTSANIGTAVTVRGLFKDLPARRKFLKTAPVEARHIIKYIHYQAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE-DFINNAVELNEKSNEITLQGY 236
            YP++SF        +             +RI +V G   F ++ + +  K N+ ++ GY
Sbjct: 181 VYPQISFRLVIDDKEKLNYIACP---ERKQRIEEVFGSGFFADDVIPVEGKYNDYSVSGY 237

Query: 237 T-GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI------PLGRYPVVVLLLE 289
             G+        +  Y FINGR + DK +  +I+ AY   I        G  P  +L LE
Sbjct: 238 IFGLEDRADKLIDAQYTFINGRYIFDKTVRHSIKAAYEPFILKTRAWQKGTTPPYILFLE 297

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I P Q+DVNVHPAK  +RFR   ++ + +++++ KA+        +    K       + 
Sbjct: 298 IPPEQIDVNVHPAKLEVRFRENNLVHSLVLETLTKALRNYEDQKFASARSKFQGGGKGEK 357

Query: 350 APKTHLPKYATSLTNTQEKLFLQE---------NRLSTNDLLPSDDPTYSEDNDPVEESE 400
                   +  ++   +   + +E          R   +   P D P ++   +   E E
Sbjct: 358 VTSLERDIFVKNIEVPRFSAYKKEFGNLFQDDLFRSEQSSTSPKDMPIFNPAQEENAEQE 417

Query: 401 ATHYQLGIAC---------------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
               Q                     Q H  YI  Q  DGLVI+DQHAAHER+I+EK+ Q
Sbjct: 418 IFPDQPNDQLKYDILLKNEEDYINPWQFHNTYIFIQVEDGLVIIDQHAAHERIIYEKLIQ 477

Query: 446 DFNSTKITSQTLLTPEIIDLLE----GECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
                    Q L+ P +ID+          L+ E+ E L ++G   ++F  N++ I EIP
Sbjct: 478 RSEGAPAVRQKLIIPLVIDIPPYISTEIKDLVEENMELLEKVGFTLKQFSGNSLVIEEIP 537

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           A L+     Q+  +I+ ++       T  D  E +  ++AC  +I++  K+   EM  L+
Sbjct: 538 AELTDFASGQVFIEILKQLEQEMEITT--DFRECLAKSIACKSAIKANHKLTRKEMLNLI 595

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++        C HGRP  +K+ ++D EK F R
Sbjct: 596 NQLFACQTPYFCPHGRPLMLKIPVTDFEKKFKR 628


>gi|296135717|ref|YP_003642959.1| DNA mismatch repair protein MutL [Thiomonas intermedia K12]
 gi|295795839|gb|ADG30629.1| DNA mismatch repair protein MutL [Thiomonas intermedia K12]
          Length = 613

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 193/607 (31%), Positives = 336/607 (55%), Gaps = 16/607 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L + +I+QIAAGE+IERP+ A++EL++N++D+ +S +   +  GG    Q+ D+G 
Sbjct: 7   PIRPLPDVLISQIAAGEVIERPASALRELLDNAIDSGASALTVRLEQGGLGSVQVEDDGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +EE+P+A+ RH TSKI+D  +  +    GFRGEAL ++ AV+ + ++SR    + GA
Sbjct: 67  GIPAEELPLALLRHATSKIADLDELHHAAHLGFRGEALAAMAAVAEIEIISRRAGAD-GA 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I  S  ++S+V+P A   GT V +R LFF +PAR  FLKS Q E     DV +R AIA+
Sbjct: 126 RIHASAGQVSAVQPTAAQQGTRVTLRQLFFNLPARRKFLKSPQTEYAWCADVFKRTAIAH 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++         + +     +     +R++ V+GE F  +A+ ++ +   + ++G    
Sbjct: 186 PQIALRLWHDGQLKLQFERDPSPHGL-DRLAAVLGEAFSAHALSVSAQIGPLAVRGLICK 244

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A+  ++ +N R V+D+ +   +R AYA+ +     P   LLL++    VDVNV
Sbjct: 245 PTAARARADVQHIIVNNRWVRDRTVAHGVRAAYADVLHGALQPQYALLLDLPSELVDVNV 304

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN---------A 350
           HPAKS +RFR+ + +   +  ++++ + + G   SS       +++ +           A
Sbjct: 305 HPAKSEVRFRDSSAVHQAVRHAVEQVLARAGGEASSSHPSAPPAAWARPPSALPTTAALA 364

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND--PVEESEATHYQLGI 408
                P  +    +   + +          L   D            +  ++   + LG 
Sbjct: 365 FGVARPSPSPIPWDALSRAYAPLATADAAPLQAQDSAAPRPYAQATDLAAAQPDDFPLGF 424

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLE 467
           A AQ+   YI++Q   GLVIVD HAAHER+++E+++    +   +  Q LL P      +
Sbjct: 425 ALAQLLGIYILAQNRHGLVIVDMHAAHERIVYERLKAAEQADAPVAVQPLLIPAAFAASD 484

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E     +H + L  LG++ +R GP+++ +R  P +L+  +  +L R ++ ++I   T+ 
Sbjct: 485 AEMGAAEDHADALRSLGVELDRAGPSSLVVRATPTLLAHADPIRLARGLLADLISQGTSS 544

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            LQ+R   +L++MAC+G++R+ R++   EMN LLR+ME+   + QCNHGRPT+ ++ L+D
Sbjct: 545 RLQERRNALLSSMACHGAVRANRQLTLAEMNALLRDMERTERADQCNHGRPTWRQIGLAD 604

Query: 588 IEKLFGR 594
           ++ LF R
Sbjct: 605 LDALFLR 611


>gi|298207994|ref|YP_003716173.1| putative DNA mismatch repair protein [Croceibacter atlanticus
           HTCC2559]
 gi|83850635|gb|EAP88503.1| putative DNA mismatch repair protein [Croceibacter atlanticus
           HTCC2559]
          Length = 617

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 161/617 (26%), Positives = 303/617 (49%), Gaps = 32/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN+LDA S  ++ ++   GK   Q+ D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELLENALDAGSESIQLIVKEAGKILIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  ++D   I+T GFRGEAL SI AVSH+ + ++  Q+  G  
Sbjct: 65  MSVTDARLSFERHATSKIKSAEDLFAINTKGFRGEALASIAAVSHVEMKTKQTQDEVGTY 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I++        GT + V++LF+ IPAR NFLKS+ VE   I D  +R+A+A+P
Sbjct: 125 IKIEGSEITTQDVCVTPKGTSISVKNLFYNIPARRNFLKSDAVEMRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F      S+ + +       N+ +RI  ++G       V + E+++ + + G+ G P
Sbjct: 185 SVAFDLHHNGSSLFSLPS----SNYRQRIVNILGTKTNERLVPVEEETDIVKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++  ++  +I +A+   +    +P   L L++DP+ +D+N+H
Sbjct: 241 EFAKRTRGEQFFFVNNRYIKSSYLHHSIVSAFEGLLRDKSHPSYFLYLDVDPKTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK--------------------- 339
           P K+ I+F +   +   +   ++ ++ +  ++      +                     
Sbjct: 301 PTKTEIKFEDEHTLYAMLKSVVKHSLGQFSVAPVLDFDRDSDLDTPYSYKEKHVSIPKID 360

Query: 340 --KMISSFH--QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
             +  + F   Q          +    T + E L++  N  +  D   +    +  D   
Sbjct: 361 VDRNFNPFQDSQPATASKQSRNFQQKPTQSWESLYVGANTEAIEDNFQTSAIEFESDEVT 420

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
               E    +      QIH+ YI+S    GL++VDQH AH R+++E++ ++   +   SQ
Sbjct: 421 GNLFENETEEHQANSFQIHRKYIVSTIKSGLLVVDQHRAHTRVLYEELLKNITMSSAVSQ 480

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  +     E +L+ E  + L + G   E    + + +  IP I+++ NI  LL+ 
Sbjct: 481 QLLFPIELQFNANELSLLNELKDSLVQTGFVFEGSQEHTLVVSGIPTIINESNIQDLLQR 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++ +         + + +  +MA   ++++G  +       LL ++      S    
Sbjct: 541 LLSDL-EQEVPGNQFSQNDTLAKSMAKSMAVKAGTVLNVEAQQHLLNQLFACKEPSVTPQ 599

Query: 576 GRPTFIKLKLSDIEKLF 592
            R  F+ L  +D++  F
Sbjct: 600 NRKVFVTLTSNDLDNKF 616


>gi|302380626|ref|ZP_07269091.1| DNA mismatch repair protein, C-terminal domain protein [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311569|gb|EFK93585.1| DNA mismatch repair protein, C-terminal domain protein [Finegoldia
           magna ACS-171-V-Col3]
          Length = 627

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/629 (29%), Positives = 301/629 (47%), Gaps = 42/629 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LSE  I +IAAGE+IERP   IKEL+ENS+DA S  +   I  GGK +  ++DNG G
Sbjct: 2   IKLLSEDTIQKIAAGEVIERPVSVIKELVENSIDAGSDAIIVEIKNGGKDYISVSDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   EI +A +RH TSK+   DD  +I T GFRGEAL SI AVS LT+ +R      G +
Sbjct: 62  IEKNEIELAFKRHSTSKLEKFDDLYDIRTLGFRGEALASILAVSKLTVSTRTKSEKIGKK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     K+ +   VAMN GT + ++DLF+ +P R  F+KS+Q E NLIT  + + AI   
Sbjct: 122 VEFRNSKVINESDVAMNVGTKIVIKDLFYNVPVRKKFMKSDQTEANLITTTMYKFAICNT 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VS  +       ++      N +  E I  + G    NN ++++  S++  + GY    
Sbjct: 182 DVSIKYIKDNKTLFETK---KNSSIKENIINLFGTSMSNNLIDIDISSHDYKIHGYISNN 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N    Y+F+NGR ++ + I + + + Y   IP GR+P+  L  EI+P+ VDVNVH
Sbjct: 239 NLYRANRKMQYIFLNGRFIKSEDIRNNVESNYKSVIPNGRFPLFWLFFEINPKLVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI-------NKKGISTSSVLSKKMISSFHQDNAPKT 353
           P K  ++      I   + + ++  +       N           K +  ++ + ++  T
Sbjct: 299 PNKQKVKISILDEILEQLNKKVRFLLENNVRITNISQSIPDDDKYKDLRRNYFESDSNLT 358

Query: 354 HLPKYATSLTNTQEKLFLQENRLS--------------------------TNDLLPSDDP 387
           +      S       LF   ++LS                            D+   D+ 
Sbjct: 359 NYKYDKVSEPTYSYNLFNDNSKLSNLRNIRYKDESEAFNKKPETNKYFFKEKDIAKQDNF 418

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERLIFEKMRQ 445
              E      ES    Y+       + + YI++  +    + + DQHA HER+ +EK+ +
Sbjct: 419 FLDEIEQIKVESSLKKYEKFDILTVLFKTYILAKDEYDSKIYLFDQHACHERINYEKLTK 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                ++ SQ L  P  I L +    +   +      LG +++ F  +++ +R +P +  
Sbjct: 479 QMLDKEVVSQNLAFPINISLTDELMEIYTNNKSIFEELGYESDVFSDDSVVVRAVPYLFG 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             N   L  DI+D I     +    D IE+ +   +C  S+++G  + + E+ +LL ++ 
Sbjct: 539 NSNAEFLFTDILDTIA--KNSNDPFDVIESKVIKRSCKMSVKAGDTLSNFEIIKLLEDLF 596

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           K      C HGRPTFI++   D+EK+F R
Sbjct: 597 KCEYPLTCPHGRPTFIEMNEKDLEKMFMR 625


>gi|198283707|ref|YP_002220028.1| DNA mismatch repair protein MutL [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218668138|ref|YP_002426336.1| mismatch repair protein MutL [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248228|gb|ACH83821.1| DNA mismatch repair protein MutL [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218520351|gb|ACK80937.1| mismatch repair protein MutL [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 595

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/598 (32%), Positives = 333/598 (55%), Gaps = 17/598 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++ +L+  + NQIAAGE++ERP+  +KEL+ENSLDAE++R+   + GGG     + D+G 
Sbjct: 8   RVHRLNATLANQIAAGEVVERPASILKELLENSLDAEATRITIHLEGGGMDLLSVEDDGV 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++P+A++RH TSK++  +D   I T GFRGEALP+I +VS L L+SR    N   
Sbjct: 68  GILAEDLPLALERHATSKVATWEDLQAIQTMGFRGEALPAIASVSRLELLSRARSQNQAV 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++G   ++  P A  PGT V V DLFF +PAR  FL+S   E +    V+R++A+A 
Sbjct: 128 RLQVTGGTAAAPEPAARAPGTTVRVADLFFNVPARRKFLRSPATELSRNQRVLRQIALAN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+F       +  +    +   +   R++ ++GE F+ NA+ + ++   ++L G+ G+
Sbjct: 188 FPVAFQLIQNGRSLVQFPTATDAESRAARVAAIMGEGFLANALYIEQEDQGLSLSGWLGL 247

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT+NR   ++ Y ++NGR V+D  +   +R AY + +   R+P+  L L++ P +VDVNV
Sbjct: 248 PTYNRARGDEQYFYVNGRPVRDPVVTHALRAAYNDVLFQDRHPLYALYLKLPPGRVDVNV 307

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+   I +F+  ++++ I ++G +   V            +   T     A
Sbjct: 308 HPAKAEVRFRDGREIHDFLFHTLRRVIAEQGGAQPRVTV-----PVQPFSQGPTATKSPA 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE---ATHYQLGIACAQIHQN 416
              T       +QE+  +  + L +   T     D         A +Y LG A  QIH  
Sbjct: 363 YVPTQRSLSAAVQESAGAYWEHLVAPVMTSVPPPDLPAAPTHELAPNYPLGQAIGQIHAR 422

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           +I++Q ++G++++DQHAAHER+++EKM+    S +   Q  + PE + +   + A   + 
Sbjct: 423 FILAQNSEGMILIDQHAAHERILYEKMKNM--SQQNEKQVFIIPEYVHVTAAQMAHFGKR 480

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
             DL   G+     GP  +AI   P  ++     Q++ D++ E    +         + +
Sbjct: 481 QPDLQAAGLDISVAGPGTLAIHAAPKAIAAATYGQIVADLLAEEPAWAEGDG-----DAV 535

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LA MAC  +I++  ++   EMN LLR++E  P   QCNHGRPT +   L+D+++LF R
Sbjct: 536 LADMACRAAIKTNHRLSLEEMNSLLRQLEATPRFGQCNHGRPTVVYFSLADLDRLFLR 593


>gi|330507604|ref|YP_004384032.1| DNA mismatch repair protein MutL [Methanosaeta concilii GP-6]
 gi|328928412|gb|AEB68214.1| DNA mismatch repair protein MutL [Methanosaeta concilii GP-6]
          Length = 571

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 181/596 (30%), Positives = 303/596 (50%), Gaps = 31/596 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E+ +N+IAAGE+IERP+  +KEL+ENS+DA + +V   +  GGKSF ++TD+G 
Sbjct: 3   RIRALDEETVNKIAAGEVIERPASVVKELVENSIDAGAHKVLIEVRDGGKSFIKVTDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
           G+  +++P+A Q+H TSKIS   D   I T GFRGEAL SI +VS  + + ++     +G
Sbjct: 63  GIDPDDLPLAFQKHTTSKISGAQDLETIGTLGFRGEALASIASVSEAVEVRTKTRDALSG 122

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + I   K++  + V    GT + V +LF  +PAR   LK  + +   I DVI  +AI 
Sbjct: 123 SYLRIENGKVAETKEVGSPVGTSIVVWNLFSNVPARRKHLKGREAKLVHIIDVITELAII 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +  ++F   +     +K    ++  +    +S++ G   +     L        ++G  G
Sbjct: 183 HYDIAFELFSGSRTHFKSARSNSWDDI---LSRIFGLKAVAGMAPLQASGRGWRIEGMIG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R + ++ ++F+NGR V  + +   +R AY   IP G+ P+ VL LEI P  VDVN
Sbjct: 240 DAFNLRASPDRIFIFVNGRAVSSRPMAGALREAYRNIIPPGKSPIAVLSLEISPDLVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  IR  +   I + + Q     ++    S +S                     + 
Sbjct: 300 VHPAKREIRLLHENEICSAVTQEAALTLSSYAKSVASE--------------------RL 339

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             S   T  +  L +N + +   L  ++ T  +        E           QI + YI
Sbjct: 340 KPSDQITASEETLAQNAMQSTLPLDVEEDTALDQ----ALPEREKRSSLKILGQIKRLYI 395

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           ++++  GLV++DQHAA ER+ FE + + +    +  Q L  P  I+L+  E  ++    E
Sbjct: 396 VAESDQGLVLIDQHAAAERIRFEGLEERYRE-GLIRQELACPVTIELMASEEIMLSSWKE 454

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  +G +   FG  + ++R +PA+  +    + + D++ E+           R + +L 
Sbjct: 455 VLDDIGFEISSFGGRSYSVRSVPALGQRTESAESVHDVLKELFLRGKPGPDSSRRDEVLK 514

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC GSI+SG+++   EM +LL ++++  N + C HGRP  + L  S +E+LFGR
Sbjct: 515 LLACRGSIKSGKELTLKEMEQLLHDLQECSNPTTCPHGRPVMVILDQSQLERLFGR 570


>gi|317129121|ref|YP_004095403.1| DNA mismatch repair protein MutL [Bacillus cellulosilyticus DSM
           2522]
 gi|315474069|gb|ADU30672.1| DNA mismatch repair protein MutL [Bacillus cellulosilyticus DSM
           2522]
          Length = 626

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 176/634 (27%), Positives = 291/634 (45%), Gaps = 53/634 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L   + N+IAAGE++ERP+  IKELIEN+LDA SS+++  +  GG S  +      
Sbjct: 3   KIIQLDNALANKIAAGEVVERPASVIKELIENALDANSSQIKIEVEEGGLSLIR------ 56

Query: 62  GM-------TSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRP 112
            M         E++ +A  RH TSK+ +D     I T GFRGEALPSI +VS+L L +  
Sbjct: 57  -MIDDGDGMDEEDVDLAFHRHATSKLRNDQDLFRIATLGFRGEALPSIASVSNLLLKT-S 114

Query: 113 PQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                G +I ++G K++     A   GT + V DLF+  PARL +LK+   E   I+DV+
Sbjct: 115 NGELQGHEIRLAGGKVTYKGSTASRKGTEIVVTDLFYNTPARLKYLKTVHTELGHISDVV 174

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            RMA+A+P V F  +        +   S NG+  + I+ + G     N + +  +  + +
Sbjct: 175 NRMALAHPNVGFHLTHNGKI---LLQTSGNGDLLKVINDIYGSSVAKNMLHIEAEDLDFS 231

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           ++GY G P   R N +     INGR +++  I   I+  Y   +P+G++P+VV  +E+DP
Sbjct: 232 IKGYVGKPEVTRSNRSYMSTIINGRYIRNYAINRAIQEGYHTLLPIGKFPIVVFHIEMDP 291

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
             +DVNVHPAK  +R      ++  I  +++K   +         S + +     +    
Sbjct: 292 ILIDVNVHPAKLEVRLSKEQALQELITNTLKKLFQQTRFIPEVKQSSQKVERSKSEQMAF 351

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--------------- 397
           +         ++  +    +++R+ + +   +     +E ++  E               
Sbjct: 352 SLSHDMVPKQSSENKGEGKEQHRIESTEDTLNKQSQVNESDNTEEIAKNYIIRSDVQDDE 411

Query: 398 -----------------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                             +            Q+H  YI++Q   GL I+DQHAA ER+ +
Sbjct: 412 VTLFSEEKKETLSVDPKTTPDNKVPPLYPIGQLHGTYILAQNDQGLFIIDQHAAQERIKY 471

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E  R+       T Q LL P   +  + E   + E      R+GI  E FG     +R  
Sbjct: 472 EYYREKLAKFDNTLQDLLVPLSFEFTQAEEERLKEKGHLFERIGIHLEPFGTRTYIVRSH 531

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P    K     L+ ++++++ D  T   +    E     M+C  +I++ R +   EM +L
Sbjct: 532 PTWFPKGEEEALISEMLEQLKDMKTID-IGKIREEAAILMSCKAAIKANRFLTHDEMFQL 590

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L  +        C HGRP  I     ++E++F R
Sbjct: 591 LETLRTCVEPYTCPHGRPVIIHYSTYEMERMFKR 624


>gi|326798889|ref|YP_004316708.1| DNA mismatch repair protein mutL [Sphingobacterium sp. 21]
 gi|326549653|gb|ADZ78038.1| DNA mismatch repair protein mutL [Sphingobacterium sp. 21]
          Length = 620

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 176/619 (28%), Positives = 303/619 (48%), Gaps = 32/619 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KELIEN++DA + +++ ++   GKS  Q+ DNG G
Sbjct: 5   IQLLPDAVANQIAAGEVVQRPASAVKELIENAIDAGADKIQLIVKDAGKSLIQVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +  +RH TSK+   +D   I T GFRGEA+ SI A++H+ L +R  ++  G  
Sbjct: 65  MSVTDARLCFERHATSKLRKAEDLFAIRTMGFRGEAMASIAAIAHVELKTRRHEDELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I +  P A   GT + V++LFF  PAR NFLKS  VE   I +  +R+A+A+P
Sbjct: 125 IMIEGSEIINQEPTATPAGTSICVKNLFFNTPARRNFLKSNPVEMRHIIEEFQRIALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           K+ F+  +  +  + +          +RI  + G ++    V + E +  I L G+ G P
Sbjct: 185 KIFFSLHSDGNEVFHLPS----EGLKQRIIHIFGSNYNQRLVPVEESTTIINLNGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + +    + Y F+N R ++D ++   +  AY E +P   YP+ VL +EIDP Q+DVNVH
Sbjct: 241 EYAKKTRGEQYFFVNNRFIKDPYLNHAVLNAYEEILPSESYPLYVLFIEIDPAQIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----------------KMIS 343
           P K+ I++++   I   I  ++++++ K  I+ +   ++                     
Sbjct: 301 PTKTEIKYQDERSIYAIIRSAVKRSLGKYNITPTLDFNQETGFSHMISHKKTEDIVPPTI 360

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA-- 401
           SF+    P     +      N       +       + L             ++  +   
Sbjct: 361 SFNPQFNPFDTGSQQKERQDNYSRSFEKKSGIPQNWETLYEITQKAHHQQLSIDSEDKQQ 420

Query: 402 -------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                       G    QIH  +I+SQ   G +++DQ AAHER++FE+  Q   + +  S
Sbjct: 421 ESAIEKTQEKPAGKLIFQIHNRFILSQIRSGFILIDQQAAHERILFERFLQQLETHQGAS 480

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q  L P+ +DL   +  LI +   D+H LG +   FG N   +  IPA L        + 
Sbjct: 481 QQSLFPQTVDLSVADFELITDLLPDIHALGFQIRAFGRNTFIVEGIPADLGSGLSESQVL 540

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           + + E   ++ +     + EN+  ++A   +I+SG  +   EMN ++ ++      +   
Sbjct: 541 EQLLEAYKNNQSTLKLTKRENLARSLARNAAIKSGTALNIDEMNDIIDKLFACSTPNVSL 600

Query: 575 HGRPTFIKLKLSDIEKLFG 593
            G+P  I   L ++ + F 
Sbjct: 601 SGKPIIITFTLKELLEKFE 619


>gi|167042844|gb|ABZ07561.1| putative DNA mismatch repair protein, C-terminal domain protein
           [uncultured marine microorganism HF4000_ANIW137J11]
          Length = 575

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 174/595 (29%), Positives = 294/595 (49%), Gaps = 27/595 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E  +N+IAAGE+IERP+  +KEL+EN+LDA +SR+   +  GG +   + D+G 
Sbjct: 3   RIRLLDEHTVNRIAAGEVIERPASVVKELVENALDAGASRIAVRVEEGGVALVSVRDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A Q+H TSKI D  D     T GFRGEAL SI AV+ + L +  P    G 
Sbjct: 63  GMERGDALLAFQKHATSKIRDFNDLLEAATAGFRGEALASIAAVARVRLTTCEPDATNGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +   ++ +V  +A   GT VEV +LF  +PAR   LK    E   I   +  +AIA+
Sbjct: 123 RVLVEDNRVEAVEDIAAPAGTTVEVAELFHALPARAKHLKRPATELRHIMRAVTVLAIAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F               +  G+  ERI  ++G +     VE++ +S  +++ G    
Sbjct: 183 PGVGFELVHGDRT----LIDAPPGDLRERIGLLLGRETARELVEVDFESAALSIAGMLAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P     +  + ++ IN R VQ + +    R AY   +    +PV  L L + P +VD NV
Sbjct: 239 PAITLRSPQKLFLHINCRPVQARALAYATRAAYGNLLHERHFPVGALFLTLPPDEVDANV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R      +   + + + + + ++ + T   L +   +  H   A        A
Sbjct: 299 HPAKRVVRLAREDAVCATLREVVARVLQEQALVTHLELGEPAATRPHGAAAVAAAPAGAA 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +     +                             +   AT          +   YII
Sbjct: 359 PAPAAGVQAQLA--------------------VTQSDQPLPATSLPGMRPLELLDDRYII 398

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  DG+ I+D HAAHER+++E++R      ++ +Q LL P  ++L   E + + +   +
Sbjct: 399 AKGPDGVYIIDFHAAHERVMYERLRLQSQYQRVGTQELLEPLSLELSRAEGSALEQLLPE 458

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG   ERFG ++  +R IPA+L+     + +R+ + EI++S +  + Q+R E +L +
Sbjct: 459 LRELGFAIERFGASSFVVRSIPALLAGGGPQR-VREALQEIVESGSMKSAQERHERLLYS 517

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC+ ++R+G ++   +M  ++REM   PN   C HGRPT + +  +++++ F R
Sbjct: 518 IACHSALRAGDRLTLAQMEFVIREMASIPNPYACVHGRPTVMTITPAELDRKFKR 572


>gi|327439601|dbj|BAK15966.1| DNA mismatch repair enzyme [Solibacillus silvestris StLB046]
          Length = 629

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 176/631 (27%), Positives = 286/631 (45%), Gaps = 44/631 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ + E + N+IAAGE++ERPS  +KEL+EN++DA S+ +E  +   G    Q+ DNG 
Sbjct: 3   KIQIMDEWLSNKIAAGEVVERPSSVVKELVENAIDAGSTSIEIFLKEAGLHSIQVIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+   +  RH TSKI    D   I T GFRGEAL SI +VS LTL  R    N G 
Sbjct: 63  GMDEEDALKSFSRHATSKIEKEQDLFRIRTLGFRGEALASIASVSKLTL--RTSDGNGGV 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  +   +P A+  GT + V  LFF  PARL +LK+ Q E     D + R+A+ Y
Sbjct: 121 HLYMEGGHLKEHQPTALRRGTDITVAQLFFNTPARLKYLKTIQTELGHTIDFVNRIALGY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++            +   +  G   + ++ + G       +     + +  + G+  +
Sbjct: 181 PTIAVKLVHNGQ---TLLQTNGRGQVQQVLAAIYGAHNAKKMLPFEGGNQDYKIHGFASL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   +F+NGR V+   I   I  AY   +P+ R+P+V+L +E DP+  DVNV
Sbjct: 238 PEVTRASKNYMSLFVNGRWVKHFVIQKAIIDAYHTYLPIERFPIVLLYVEGDPQLTDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R      +   I  +I+  I +      +  ++K I +  +        P   
Sbjct: 298 HPAKHQVRLSKEPELLKLIEDTIRSLIREVIRIPLAEKNEKPIRTPTEQMNIWNPAPAMQ 357

Query: 360 T-----------------------------------SLTNTQEKLFLQENRLSTNDLLPS 384
                                                    + +   Q +    +++   
Sbjct: 358 PTFNEDKLSTIVERLSNEASIVKEPYAPVPTQQQVVPAAPPEPESSEQHSTEDFHEIPTI 417

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
           ++  Y E++   E     H+       QIH  YI++Q  DG  ++DQHAA ER+ +E  R
Sbjct: 418 EEEMYLEESPMKEVESKRHFPQVEIVGQIHGTYIVAQMEDGFYLIDQHAAQERIKYEYFR 477

Query: 445 QDFNS-TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                      QTLL P        E   + E  E L  +G+  E FG ++  +RE P  
Sbjct: 478 DKVGEVNANERQTLLMPLTFHYAADEALRLKESKEALEEVGVFLEEFGLSSFVVREYPTW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
             K    +++ ++I++++ +  T  ++   E+    M+C  SI++   +   +M RL+ +
Sbjct: 538 FPKGEEQEIIEELIEQVLSARKTD-IKKLREDAAIMMSCKKSIKANHYLNKEQMERLIND 596

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +    N   C HGRP  I     ++EK+F R
Sbjct: 597 LRNADNPFTCPHGRPVLIHFTSYEVEKMFKR 627


>gi|194333111|ref|YP_002014971.1| DNA mismatch repair protein MutL [Prosthecochloris aestuarii DSM
           271]
 gi|238693301|sp|B4S3X8|MUTL_PROA2 RecName: Full=DNA mismatch repair protein mutL
 gi|194310929|gb|ACF45324.1| DNA mismatch repair protein MutL [Prosthecochloris aestuarii DSM
           271]
          Length = 622

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/624 (29%), Positives = 309/624 (49%), Gaps = 36/624 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL E + N+I+AGE+++RP+  +KELIEN++DA + R+   I   GK   QI DNG 
Sbjct: 3   RITKLPESVANKISAGEVVQRPASVVKELIENAIDAGAGRIVLSIKDAGKQLVQIIDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  M V+R  TSKIS  ++   + T GFRGEAL SI +VSH  L S     +   
Sbjct: 63  GMSEPDALMCVERFATSKISSAEELETLGTLGFRGEALASISSVSHFELKSCSEGMDAAF 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                G ++      A + GT + VR+LFF +PAR  FLK+   E   I + ++  A+AY
Sbjct: 123 LHRYEGGELVEKSKAAADRGTTISVRNLFFNVPARRKFLKTNATEFKHIFETVKAQALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ +         +         +  ER++   GE+F ++ +E+ E+++ ++L GY G 
Sbjct: 183 PEIQWQLFNDDEELFHFRS----SDMHERLNFFFGEEFADSLIEIREENDFLSLYGYVGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +   N    +IN R +Q++ +   ++ AY E +   + P  +L L +D RQVD+NV
Sbjct: 239 PGMLKRQKNDQLFYINRRVIQNRMLSQALQQAYGELLVERQTPFALLFLGLDTRQVDINV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-----VLSKKMISSFHQDNAPKTH 354
           HPAK  ++F +   IRN +   +++A+  +  +        +  +    + + +N+ +  
Sbjct: 299 HPAKLEVKFEDERNIRNMVYPIVKRAVQLQDFAPDVGIAGLLERQMTQDAMNPENSLRKL 358

Query: 355 LPKYATSLTNTQEKLFLQ-----------------ENRLSTNDLLPSDDPTYSEDNDP-- 395
             K A   ++T + L+                   E     +DLL        + +    
Sbjct: 359 EYKRAAGPSSTTDDLYRSYLSELPPVSSPPPGSIGEQGEMFSDLLAPSRDRELKPSVYDR 418

Query: 396 -----VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                 +E+            Q+H  YI+ Q   GL+++DQH AHER+++E+  +  N+ 
Sbjct: 419 SALLQSDENRPDPAGSDSKIWQLHNKYIVCQIKTGLMVIDQHVAHERVLYERAVEIMNNN 478

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
              SQ LL P+ I+L   E  +  E  +DL RLG     FG   + I  I   +      
Sbjct: 479 VPNSQQLLFPQKIELKSWEYEIFQEIRDDLCRLGFNLRSFGNRTVMIEGIAQDVRNGTEA 538

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            +L+++IDE   ++    L+ R EN+  + +C  +I SG+K+   EM  L+  +      
Sbjct: 539 VILQNMIDEYQQNALKLKLEKR-ENLAKSYSCRNAIMSGQKLSLEEMRSLIDRLFATRMP 597

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C HGRP  IK+ L  ++++FGR
Sbjct: 598 YVCPHGRPVIIKISLDQLDRMFGR 621


>gi|56475775|ref|YP_157364.1| hypothetical protein ebA658 [Aromatoleum aromaticum EbN1]
 gi|56311818|emb|CAI06463.1| similar to DNA mismatch repair protein [Aromatoleum aromaticum
           EbN1]
          Length = 633

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 209/631 (33%), Positives = 341/631 (54%), Gaps = 47/631 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L++ ++NQIAAGE++ERP+  +KE++EN+LDA +  ++  +  GG    ++ D+G G
Sbjct: 9   IRPLADVLVNQIAAGEVVERPASVLKEVLENALDAGARAIDVQLEQGGVRRIRVADDGCG 68

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A++RH TSKI+  +D   + T GFRGEAL +I AV+ LTL SR   +    +
Sbjct: 69  IARDDLALALERHATSKIATLEDLEQVGTMGFRGEALAAIAAVARLTLTSRAEGSAHAWR 128

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        S+ P A+N GT+V+V DLF++ PAR  FLKSE  E     +V RR+A+A P
Sbjct: 129 I---DGTDRSLAPAALNQGTVVDVADLFYSTPARRKFLKSEATEYAHCDEVFRRIALARP 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +    +      +++      G+   R++ ++G+DF+ +A  L+  +  + L G   +P
Sbjct: 186 DIGLQLAHNGRVVHRLPA----GDPLRRVAALMGDDFLQHARNLDADAGPLRLAGVAALP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            ++R + +  Y+F+NGR V+DK +   +R AYA+ +   R+P  VL LE+DP  VDVNVH
Sbjct: 242 AYSRTSRDAQYLFVNGRFVRDKLLTHAVRQAYADILHGSRHPAYVLFLELDPAGVDVNVH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKK--GISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           PAK  +RFR    +  F+  ++ +++     GI  +   +     +   D    T   + 
Sbjct: 302 PAKIEVRFREARAVHQFVFHALTRSLAASGAGIGVTGDNANAAAVAAEADPGGSTAPARA 361

Query: 359 ATSL----------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDND-------------- 394
           A  L             Q +L ++    S  D   S  P  S  +               
Sbjct: 362 ANPLRYANAAGHDAAPVQGRLAMEAASRSYYDFAASARPAESPSSPADASGFRPTAFAPS 421

Query: 395 -----------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                      P+   EA    LG A AQ+H  YI++Q   GLV+VD HAAHER+++EK+
Sbjct: 422 AGRGAATAAEAPMPPIEAASAPLGYAIAQLHGIYILAQNAAGLVLVDMHAAHERILYEKL 481

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +   +      Q LL P ++ +   + A   E  E L R+G +    GP  +A+R +PA+
Sbjct: 482 KTVLDGQP-AVQRLLIPAVLSISAKDMAAAEECAEVLARMGFEVAPVGPAELAVRSVPAL 540

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L+   I +LLR +++E+ +   +  +  R   +LATMAC+G++R+ R +   EMN LLR+
Sbjct: 541 LASAPIGELLRKLLEELREFPASEVVTARRNELLATMACHGAVRAHRSLTIPEMNALLRD 600

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    + QCNHGRPT+ +L + ++++ F R
Sbjct: 601 MEATERADQCNHGRPTWTQLTMGELDRFFMR 631


>gi|301058292|ref|ZP_07199332.1| DNA mismatch repair protein, C-terminal domain protein [delta
           proteobacterium NaphS2]
 gi|300447626|gb|EFK11351.1| DNA mismatch repair protein, C-terminal domain protein [delta
           proteobacterium NaphS2]
          Length = 573

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/595 (31%), Positives = 309/595 (51%), Gaps = 28/595 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L EKI +QIAAGE+IERP+  ++ELI+NS+DA + R+      GGK   +++DNG 
Sbjct: 3   TIRILPEKIASQIAAGEVIERPASVVRELIDNSIDARADRISIKTERGGKGLIRVSDNGI 62

Query: 62  GMTSEEIPMAVQRHCTS--KISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++ + ++RH TS  KI+ D S++ +FGFRGEA+PSI AVS L + S P +   G 
Sbjct: 63  GMGRDDLLLCLERHATSKIKIASDLSSVTSFGFRGEAIPSIAAVSRLEITSLPDKALLGN 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +SG K+ SV  V    GTIV V++LFF +PAR  FLK+ + E N I D + R A+ +
Sbjct: 123 RVTMSGGKLLSVEEVGAPQGTIVAVKNLFFNMPARRKFLKTPRTEMNHIVDAVLRAAMPF 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            K+SF     +   + +   S       R+S ++      + +       ++ +  +   
Sbjct: 183 RKISFRLEEGEREIFHLPASSNPS---LRLSHLMDRMAGKSLLSGENSQKDLHIAVHAAP 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             F R  A++ +V++NGR ++D+F+   I   Y + +  GRYP  ++ + IDP Q+DVNV
Sbjct: 240 AEFARKRADRLFVYVNGRNIKDRFVTKAIIEGYGQRLMKGRYPQALVFITIDPAQIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  I+F+N   +   +   + + +       ++ L  K    F   N      P+ A
Sbjct: 300 HPAKQEIKFQNGQQVFRAVAAVVHQTLK-----PAAHLVPKRPEPF--TNLKSGEAPQSA 352

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            S+  T E       R      + +    +                      Q+   YI+
Sbjct: 353 PSIFKTVEPYVPATVREPPPAPIKAPSMDFKAPE---------------IIGQLGNMYIL 397

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            Q  DGL++VDQHAAHER+++E +++   S  I  Q LL P  ++    E  +++E    
Sbjct: 398 CQMDDGLLLVDQHAAHERIVYETLQKSLRSANIEIQNLLLPYEMEFSLKEKGVLLEKGHV 457

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L +LGI+ + FG N   +R +PA+L   N   L+ + I ++ D           +  +  
Sbjct: 458 LAQLGIELDHFGGNTFLLRSVPALLKDVNWQMLISEFISKL-DEGVPLEGVHLTDEAIKI 516

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC+G+IR+G+ +   EM+ L+R++ +    + C HGRP F      ++ K+F R
Sbjct: 517 MACHGAIRAGQHLTPTEMSDLVRQLSEMDLPTNCPHGRPIFKSFTYFELSKMFKR 571


>gi|91200771|emb|CAJ73824.1| similar to DNA mismatch repair protein MutL [Candidatus Kuenenia
           stuttgartiensis]
          Length = 593

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 192/601 (31%), Positives = 320/601 (53%), Gaps = 19/601 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K++ L   +IN+IAAGE+I+R +  +KELIEN++DAE+ R++  +  GG+   +I+D+G 
Sbjct: 3   KVKILPPSVINKIAAGELIDRSAAVVKELIENAIDAEAKRIDVYLEDGGRKLIRISDDGV 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +  + H TSK+S  +D   I+T GFRGEALPSIGAVS+  + SR     +GA
Sbjct: 63  GIDAEDLALVFRSHTTSKLSSAEDLFAINTLGFRGEALPSIGAVSNSKITSRIRGAISGA 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G +I  VR      GT +EV+DLFF  P R  F+K+   E + I+DV+ R A+ Y
Sbjct: 123 EIKTEGGRIGDVRECGAPEGTQIEVQDLFFNTPVRKKFMKTAPTEMSYISDVLTRFALCY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + FT        + +          ERI    G +   + +    +    +L+GY   
Sbjct: 183 PNIHFTLRHNNRTVFNL---PPVQEVIERIETFFGSELKKHLLSAFLREELFSLKGYIAP 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  N+ N    ++F+NGR ++D  I   I  AY   +   RYP+V L L + P +VDVNV
Sbjct: 240 PFLNKANGRLQFIFLNGRYIKDTAIYRAISDAYHGKLMNKRYPIVFLFLTVAPSEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RFRN +++ N+++ +++ A+NK    +  +++ +   +F +D      +    
Sbjct: 300 HPTKTEVRFRNKSVVFNYVLSTLKDALNKSQPKSIDIVTPEK--TFQRDLGNTDTVDHRN 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--IACAQIHQNY 417
           TSL    E+   ++    T    PS D  ++      EE               QIH  +
Sbjct: 358 TSL---WEQFPFEKTVEKTPASGPSTDVKHTTAMPIREEISVGKAIFSGKKRYFQIHNAF 414

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+ +T +GL I+DQHA HE +++  + +   S++   Q LL PE+++L   +   ++   
Sbjct: 415 IVEETNEGLNIIDQHALHEIILYHAILKGMQSSQSPRQRLLIPELVELNPKDFFFVLSIK 474

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           E L  +GI+ E FG N I IR  P IL   N  + + ++  +  +  +    +  +  ++
Sbjct: 475 EQLEGIGIEIEEFGSNTIMIRSFPQILKHLNGKEFIENLTHDFGEEDSRKGNEGVMNKLV 534

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS----SQCNHGRPTFIKLKLSDIEKLFG 593
             MAC  ++++G++++  E+  L   MEK  N     + C HGRPT + L L ++ K F 
Sbjct: 535 NIMACKAAVKAGQRLEYQEIEEL---MEKKKNINAYTNNCPHGRPTTLSLSLDELYKHFK 591

Query: 594 R 594
           R
Sbjct: 592 R 592


>gi|270308366|ref|YP_003330424.1| DNA mismatch repair protein, MutL/HexB family [Dehalococcoides sp.
           VS]
 gi|270154258|gb|ACZ62096.1| DNA mismatch repair protein, MutL/HexB family [Dehalococcoides sp.
           VS]
          Length = 566

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/599 (30%), Positives = 318/599 (53%), Gaps = 39/599 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  I +IAAGE+IERPS  +KEL+ENSLDA + RV+ VI  GG  + +++D+G
Sbjct: 1   MPIKLLDKTTIARIAAGEVIERPSSVVKELLENSLDAGAKRVDVVIREGGIGYIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A +RH TSK+S  +D   I + GFRGEALPSI AV+ L +++      +G
Sbjct: 61  CGIVFSEVLLAFERHATSKLSSFEDIYAISSLGFRGEALPSIAAVADLEMLTAARTEESG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +++SG ++     +A +PGT +++  LF  +PARL FLK+ Q E + +++V+   A+A
Sbjct: 121 TYLSLSGGEMVKHTRMARSPGTTIKLTRLFSRVPARLKFLKTPQREASKVSEVVLSYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE---ITLQG 235
           YP+V FT S    N         NG   + + ++ G D  +  ++L   S     I + G
Sbjct: 181 YPEVKFTLSIDGRNTLN---TPGNGKLRDAVLEIYGNDVASKMLDLETDSYRSSSINISG 237

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P  +R N N  + F+N R +Q + +   +  AY+  + +GRYP+ V+ + +D   V
Sbjct: 238 LVSPPEISRSNRNSLHFFVNRRLIQSRALQKAVEQAYSGLLIVGRYPMGVINIWLDGALV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HP K+ ++F +   +   + + ++ A+ +                       K  +
Sbjct: 298 DVNIHPTKAEVKFSDENAVFTSVQRVVRSALVE-----------------------KPPI 334

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P+   + +  Q++   QE      D+      T    +  ++ ++ +   L     QI  
Sbjct: 335 PRIEETPSVYQQEAARQEPI--WGDIPKPIGVTQQYASPLIQSAKTSSLPLLRLVGQIGG 392

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y++++  DGL I+DQHAAHER+ +E++     S +   Q+LL P I++L   + A+I +
Sbjct: 393 LYLLAEGPDGLYIIDQHAAHERIRYEEIASQIPS-ENARQSLLEPFILELNPVQEAMIEK 451

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              +L  +G + E FG     ++ IPA  +      LL +++D   D+     +++R+  
Sbjct: 452 CKSELDLMGFEIEEFGRRVFRVQSIPAGFTAPQAKALLSELVDNPKDAPAE--IKERLRR 509

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   MAC+ ++R+G+ +   EM  LL ++EK      C HGRPT +K+  S +EK F R
Sbjct: 510 L---MACHTAVRAGQVLTEAEMRELLLKLEKTAVPGHCPHGRPTIVKIDFSQLEKDFKR 565


>gi|116328839|ref|YP_798559.1| DNA mismatch repair ATPase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|122283376|sp|Q04Z69|MUTL_LEPBL RecName: Full=DNA mismatch repair protein mutL
 gi|116121583|gb|ABJ79626.1| DNA mismatch repair enzyme (predicted ATPase) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 596

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/600 (31%), Positives = 305/600 (50%), Gaps = 14/600 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS ++INQIAAGE+IE     +KEL+ENS+DA +++++     GG S  +ITDNG 
Sbjct: 3   KIQELSPELINQIAAGEVIESAHSVVKELMENSMDAGATQMDIESKDGGLSLLRITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+I  A++RH TSKI D  D  N+ ++GFRGEAL SI +VS LTL S      T  
Sbjct: 63  GIDPEDIEPALKRHATSKIRDYGDLENVLSYGFRGEALASIASVSRLTLESGIKNQKTAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G KIS    +    GT + V +LFF  P R  FLKS + E   I D +   A+A 
Sbjct: 123 KICSIGGKISEKEEIPGFVGTKILVEELFFNTPVRRKFLKSVRSEDKKIRDRVTTQALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F         + +    +  N  +RI  + GE+F ++ +E++ +   +   GY   
Sbjct: 183 HDVRFRLFQDGKEVFVL---PSRENKKDRIVDLFGENFRDHLLEVSLERGGLNATGYISD 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F + N    +VF+NGR V+ K+  + ++ AY E +P   +P   L  EIDP +VDVNV
Sbjct: 240 PDFYKSNRTGQFVFVNGRPVEIKYGSTLLKKAYDELLPPNGHPYCFLFFEIDPSRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  IRF +      F +  IQK +      +   L K+++    +     +    ++
Sbjct: 300 HPAKKEIRFLDEEGFNGFFLTLIQKELRSSTPVSFLELKKRLLRPTPETFKTSSLYQAHS 359

Query: 360 TSLTNTQE----KLFLQENRLSTNDL-LPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           +S +        +LF +  R    DL       + S   D V +  +   +       + 
Sbjct: 360 SSRSGESPLLSRELFTEVPRQEGFDLDRMGPGASLSALTDNVVKHSSFVPK--KHFGVLF 417

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + +I+++  DG  I+DQH AHER+ +E++ +         Q LLTP  ID+ + E   I+
Sbjct: 418 ETFILAEAEDGFYIIDQHTAHERIRYEEVLRKLEKKNYGIQPLLTPIRIDVSKQEQEDIL 477

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              ++   +GI  +  G +++ +REIPA +      +++ D ++         T  +  +
Sbjct: 478 NRKKEYEEVGIFLDPLGEDSVVLREIPAYMEPGEEKEIILDFLN--RTEGKETTEPELYD 535

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   +AC  +I+ G  +    +  +L  +    N S+C HGRPT +KL   D+E++F R
Sbjct: 536 LMAKCVACRSAIKKGDHLSDPILAEILNRLSYCENPSRCPHGRPTLVKLSRDDLERMFHR 595


>gi|309389298|gb|ADO77178.1| DNA mismatch repair protein MutL [Halanaerobium praevalens DSM
           2228]
          Length = 650

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/656 (27%), Positives = 319/656 (48%), Gaps = 73/656 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L + + NQI+AGE+IERP+  +KELIENS+DA +  +E  I  GG+   ++ D+G G
Sbjct: 4   IKQLPQNVANQISAGEVIERPASIVKELIENSIDAVAKNIEVKIEDGGRELIKVKDDGHG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +++I  A  R+ TSKI   DD  ++++ GFRGEAL SI +V+ + ++SR   +N   +
Sbjct: 64  IEADDIESAFNRYATSKIEDIDDLYSLYSLGFRGEALASIASVAEVEMISRHQASNQAMK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  I + +P     GT + VR+LF+  PAR  +LK    E + I+ ++   A A  
Sbjct: 124 IKIKGGDILAKKPTGSTIGTEISVRNLFYNTPARYKYLKRTTTEFSHISKIVSAEATANS 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF          K+     +G   + I  V G +   N + +  +   I L GY   P
Sbjct: 184 NLSFKLYHNGR---KILSTPGSGKLKDTIYAVYGSEIAENLIPIETEDRYIKLSGYLCRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +    F+NGR + +      + TAY +    GR P+V L ++++P  VDVNVH
Sbjct: 241 ELTRSSRSHELFFVNGRPIYNNLTAKAVETAYNKLTNPGRKPIVFLFIKVNPILVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP--------- 351
           PAK  ++F    II + I +++++ +     +    L +    +   D A          
Sbjct: 301 PAKREVKFSRNQIIFDVIKKAVRQCLKANDPTRRIKLEQNKTETTKSDKAEDEINRENLF 360

Query: 352 ---------------------------------KTHLPKYATSLTNTQEKLF-------- 370
                                            K + P+  + L +  +K +        
Sbjct: 361 EKNIKNTSDEKKAGLNKNQKLNTSKISKKGKYKKPNYPQKQSQLNSYAQKDYQKNINYGK 420

Query: 371 ------------LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                        +E++ + N++  ++   YS      EE         I   QI  +Y+
Sbjct: 421 DNKGLTKKNGQSFKESQSNLNEIRAAEKQKYSLVESKAEEK------YFIFLGQIFNSYL 474

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +T  GL IVDQH A ER+++EK   +FN    +SQ+LL P  I+L   E  ++ +++ 
Sbjct: 475 LIETDKGLKIVDQHNAQERILYEKFYAEFNQKDKSSQSLLIPVKIELSIEEREIVRQYEN 534

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           ++ +LGI    FG N I I+E+P +L  K+   ++ ++I ++ ++  T +  +  + +L 
Sbjct: 535 EIKKLGIDFSDFGNNTILIQEVPVLLKNKSTRNIIEELIADLAEAGKTKSTAEIQKRMLE 594

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC  SI++G+ +   E  +L++++ +  N  +C H RP  I +   +IEK  GR
Sbjct: 595 YLACRSSIKAGQPLTKRESIQLIKDLYQTENPYRCPHSRPVMININRKEIEKGLGR 650


>gi|303233710|ref|ZP_07320364.1| DNA mismatch repair protein, C-terminal domain protein [Finegoldia
           magna BVS033A4]
 gi|302495144|gb|EFL54896.1| DNA mismatch repair protein, C-terminal domain protein [Finegoldia
           magna BVS033A4]
          Length = 626

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/628 (30%), Positives = 303/628 (48%), Gaps = 41/628 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LSE  I +IAAGE+IERP   IKEL+ENS+DA S  +   I  GGK +  ++DNG G
Sbjct: 2   IKLLSEDTIQKIAAGEVIERPVSVIKELVENSIDAGSDTIIVEIKNGGKDYISVSDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   EI +A +RH TSK+   DD  +I T GFRGEAL SI AVS L + +R      G +
Sbjct: 62  IEKNEIELAFKRHSTSKLEKFDDLYDIRTLGFRGEALASILAVSKLIVSTRTKSEKIGKK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     K+ +   VAMN GT + ++DLF+ +P R  F+KS+Q E NLIT  + + AI   
Sbjct: 122 VEFRNSKVINKSDVAMNVGTKIVIKDLFYNVPVRKKFMKSDQTEANLITTTMYKFAICNT 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VS  +       ++      N +  E I  + G    NN ++++  S++  + GY    
Sbjct: 182 DVSIKYIKDNKTLFETK---KNSSIKENIINLFGTSMSNNLIDIDISSHDYKIHGYISNN 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N    Y+F+NGR ++ + I +T+ + Y   IP GR+P+  L  EI+P+ VDVNVH
Sbjct: 239 NLYRANRQMQYIFLNGRFIKSEDIRNTVESNYKSVIPNGRFPLFWLFFEINPKLVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL-------------SKKMISSFHQ 347
           P K  ++      I   + + ++  +      T+                  +  S+   
Sbjct: 299 PNKQKVKISILDEILEQLNKKVRFLLENNVRITNISQSIPDDKYKDLRRNYFESDSNLTN 358

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQEN------------RLSTNDLLPSDDPTYSEDNDP 395
               K   P Y+ +L N   KL    N            +  TN     +     +DN  
Sbjct: 359 YKYDKVSEPTYSYNLFNENSKLSNLRNIRYKDESEAFNKKPETNKYFFKEKDVAKQDNLF 418

Query: 396 VEESEAT-------HYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERLIFEKMRQD 446
           ++E E          Y+       + + YI++  +    + + DQHA HER+ +EK+ + 
Sbjct: 419 LDEIEQIKVESYLAKYEKFDILTVLFKTYILAKDEYDSKIYLFDQHACHERINYEKLTKQ 478

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               ++ SQ L  P  I L +    +   +      LG +++ F  +++ +R +P +   
Sbjct: 479 MLDKEVVSQNLAFPINISLTDELMEIYTNNKSIFEELGYESDVFSDDSVVVRAVPYLFGN 538

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            N   L  DI+D I     +    D IE+ +   +C  S+++G  + + E+ +LL ++ K
Sbjct: 539 SNAEFLFTDILDTIA--KNSNDPFDVIESKVIKRSCKMSVKAGDTLSNFEIIKLLEDLFK 596

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                 C HGRPTFI++   D+EK+F R
Sbjct: 597 CEYPLTCPHGRPTFIEMNEKDLEKMFMR 624


>gi|256847967|ref|ZP_05553411.1| DNA mismatch repair protein mutL [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715027|gb|EEU30004.1| DNA mismatch repair protein mutL [Lactobacillus coleohominis
           101-4-CHN]
          Length = 662

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 179/648 (27%), Positives = 296/648 (45%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+  + NQIAAGE+IERP+  IKEL+ENSLDA S R++ V+   G    ++ D+G 
Sbjct: 3   KIHELNNVLANQIAAGEVIERPASIIKELVENSLDAHSKRIDIVVTKAGLGELRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++  A +RH TSKIS   D   + T GFRGEALPSI +V+ + + +      +G 
Sbjct: 63  GIATEDVKEAFKRHATSKISTRQDLFRVQTMGFRGEALPSIASVADVVMTTAT-GGASGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I   G ++   +      GT V+V +LFF  PARL +LKS Q E + + D+I R+A+A 
Sbjct: 122 MIHFHGGELKDFQAAPARRGTDVKVSELFFNTPARLKYLKSPQTELSRMVDIINRLALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +F+      ++    + NGN  + I+ + G       + ++    + T+ G   +
Sbjct: 182 PDVAISFTHDGREMFR---SAGNGNVQQVIAAIYGVKVGRKMLAIHGADPDFTVDGLVSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R V++  +   I   Y   + +GRYPVVV+ +++DP  VDVNV
Sbjct: 239 PELTRASGQYMTITINHRYVRNYQLTKAIIEGYGSKLMVGRYPVVVVNIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R      +   I  +IQ+ I ++ +          + +    +  +     Y+
Sbjct: 299 HPAKREVRLSKEQQLATLISTTIQQKIAQQNLIPDVGERANQLLTTPNSSVVEEKTDTYS 358

Query: 360 TSLTNTQ-------------------------------EKLFLQENRLSTNDLLPSDD-- 386
            +   T                                 +  LQ+ RL   D    ++  
Sbjct: 359 QTANLTSNEAATPVMMDHSNPAKVDSRDSIVATPIVIHSRAELQQPRLKEFDRKYQNEVA 418

Query: 387 ----------PTYSEDNDPVEE----------SEATHYQLGIACAQIHQNYIISQTTDGL 426
                         E N   EE           +   +       Q+   ++++Q +DGL
Sbjct: 419 TPFNDEQTTVNNREETNQHTEEVSLAINDQGDHDQQRFPQLQYIGQLQGTFLLAQASDGL 478

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            I+DQHAA ER+ +E+ R+         Q  L P +++    +   I E    L ++G+ 
Sbjct: 479 YIIDQHAAQERVNYERFRKAIGQVSADQQNFLQPLVLNYSVSDALKINEQLTTLQQVGLH 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E FG N+  +   P            R++ID +I +    T+ +        M+C  +I
Sbjct: 539 LEPFGQNSFLLSSHPTWFIDGQEEDTAREMIDWVIQNGH-LTVAEFRAKTAIMMSCKRAI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +  ++   LL+ +    N   C HGRP  I    +D+EKLF R
Sbjct: 598 KANHHLDDLQAKALLKTLPHCENPFNCPHGRPVLIHFTDTDLEKLFKR 645


>gi|114566509|ref|YP_753663.1| DNA mismatch repair ATPase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318426|sp|Q0AYB2|MUTL_SYNWW RecName: Full=DNA mismatch repair protein mutL
 gi|114337444|gb|ABI68292.1| DNA mismatch repair protein MutL [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 584

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 173/596 (29%), Positives = 302/596 (50%), Gaps = 14/596 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L++ +IN+IAAGE+IERP+  +KEL+EN++DA S  +   I+G G    ++TD+G
Sbjct: 1   MAIKLLNDNVINKIAAGEVIERPASVVKELLENAIDAASRNIAVKISGAGLDSIEVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ EE+P+A  RH TSKI +  D   I + GFRGEALPSI +VS + + S+  +   G
Sbjct: 61  EGISMEELPLAFLRHATSKIENEGDLLRIMSMGFRGEALPSIASVSRIDIYSKKEKQE-G 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               I G KI  ++      G+ + V DLFF  PAR  FL+S   E N   +++ + A+A
Sbjct: 120 IHCFIEGGKILDLQYFPGPEGSKIIVSDLFFNTPARKKFLRSPVTEGNNAYELVIKYALA 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P ++ +FS  K    ++     NG+  + +  + G DF+   + +  +   +++ G   
Sbjct: 180 RPDIAISFSNEKR---QLFRTPGNGSLNDAVIAIFGRDFLEPLIPVKWEGLSLSISGLIS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   + N  +  +F+N R ++   +   +   Y   +     P+V+L + + P  +DVN
Sbjct: 237 PPGVAKMNRKRQLIFVNQRPIRSPLLYRALDEGYRGLLLAREQPLVILQIAVPPDSIDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP KS IRFR+   I   +   ++  +N +       L +     F+     KT   K 
Sbjct: 297 VHPQKSEIRFRDEQSIFRSLCGLLRDTLNARDYRLQDNLPQNRSQPFYPAAGRKTAKQKV 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                         + R+        +        +  E S +  Y       Q+  +YI
Sbjct: 357 EEQPVIPFMHNRKADKRVEETGG---EPWIPFYPEEQAEGSVSRVYDEFKILGQLWDSYI 413

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +    L IVDQHAAHER+I+ +++Q + +++   Q L  P ++DL   +  L+ ++ E
Sbjct: 414 LLEKEQTLNIVDQHAAHERIIYSRLQQFYAASRGEMQMLAFPLLMDLSLRDMELLEKNQE 473

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG   ++ GP +I +R  PAI++ +      R+++ EI++        +     + 
Sbjct: 474 ILGELGFDLQQAGPRSIFLRGTPAIIAGQE-----REVLFEILELLAGGQGINLKNEAII 528

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            MAC  ++++G ++   EM ++++E+    +   C HGRPT I  K +D+E++F R
Sbjct: 529 KMACKKAVKAGTRLDYREMMQIIQELFITDDYKNCPHGRPTIIAWKQADLERMFKR 584


>gi|294827808|ref|NP_711356.2| DNA mismatch repair protein MutL [Leptospira interrogans serovar
           Lai str. 56601]
 gi|59798328|sp|Q72PF7|MUTL_LEPIC RecName: Full=DNA mismatch repair protein mutL
 gi|59798410|sp|Q8F6X4|MUTL_LEPIN RecName: Full=DNA mismatch repair protein mutL
 gi|293385653|gb|AAN48374.2| DNA mismatch repair protein mutL [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 593

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/595 (30%), Positives = 297/595 (49%), Gaps = 7/595 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS ++INQIAAGE+IE     +KEL+ENS+DA +++V+     GG S  +ITDNG 
Sbjct: 3   KIQELSPELINQIAAGEVIESAHSVVKELMENSMDASATQVDVESKDGGLSLLRITDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A++RH TSKI D  D  ++ ++GFRGEAL SI +VS LTL S   +  T  
Sbjct: 63  GIEPEDLEPALKRHATSKIQDYKDLESVLSYGFRGEALASIASVSRLTLESGTKEQKTAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KIS    +    GT + V +LFF  P R  FLKS + E   I D +   A+A 
Sbjct: 123 KTRSVAGKISEKEEIPGFIGTKILVEELFFNTPVRRKFLKSIRSEDKKIRDRVTTQALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F         + +    T  N  ERI  + GE+F ++ +E++ +   I   GY   
Sbjct: 183 EDVRFRLFQDGKEVFVL---PTRENKKERIIDLFGENFRDHLLEVSLERGGIQATGYISD 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F + N    ++FINGR ++ K+    ++ AY E +P   +P   L  EIDP +VDVNV
Sbjct: 240 PDFYKSNRTGQFIFINGRPIEIKYSSVLLKKAYDELLPPNGHPYCFLFFEIDPSRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  IRF +      F +  IQK +      +   L K+++    + ++  +     +
Sbjct: 300 HPAKREIRFLDEDGFNGFFLALIQKELRSSTPVSFLELKKRLLKPAPETHSTTSFYQARS 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           +       +             L    P  S      E  + + +        + + +I+
Sbjct: 360 SGKNPLLGRELFSGVSKQEGFELDRMGPGVSLSELTDERVKHSSFVPKKHFGVLFETFIL 419

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  DG  I+DQH AHER+ +E++ +         Q LLTP  ID+ + E   I+   ++
Sbjct: 420 AEAEDGFYIIDQHTAHERIRYEEVLRKLEKRNYGIQPLLTPIRIDVSKQEQEDILNRKKE 479

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
              +GI  +  G ++I +REIPA +      +++ D ++         +  +  + +   
Sbjct: 480 YEEVGIFLDPLGEDSIVLREIPAYMEPGQEKEIVLDFLN--RTEGKETSEPELYDLMAKC 537

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  +I+ G ++    +  +L  +    N S+C HGRPT +KL   D+E++F R
Sbjct: 538 VACRSAIKKGDQLSDPILAEILNRLSYCENPSRCPHGRPTLVKLSRDDLERMFHR 592


>gi|42523070|ref|NP_968450.1| DNA mismatch repair protein MutL [Bdellovibrio bacteriovorus HD100]
 gi|39575275|emb|CAE79443.1| DNA mismatch repair protein MutL [Bdellovibrio bacteriovorus HD100]
          Length = 626

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 179/626 (28%), Positives = 307/626 (49%), Gaps = 39/626 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++++QIAAGE++ERP+  +KEL+ENS+DA ++RV      GG+   ++ DNG
Sbjct: 6   MSIQILSPEVVDQIAAGEVVERPAHLVKELVENSIDAGATRVHVEFYDGGR-IVKVIDNG 64

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM+ E++P +++R  TSKIS  DD  ++ TFGFRGEAL SI +VS LTL SR   +   
Sbjct: 65  KGMSPEDLPKSLERFATSKISKTDDLWSLRTFGFRGEALASIASVSKLTLTSRRAGDEQA 124

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            Q+     K   +  V  + GT + + +LF   PARL FLKS+  E + I   ++ MA++
Sbjct: 125 HQLISEYGKRKEIDKVGGSQGTTILIENLFDNTPARLKFLKSDSAENSAIKTTLKAMALS 184

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +  V F                +  +  E+I ++          E       +       
Sbjct: 185 HYDVEFRIQENGKLVAFWPACKSRKDRVEQILEIKP------LFEGEASRENVKAYAVFA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P      +   ++F   R +QD+ + + +  AY   +  G YP+  + +E+DP  VDVN
Sbjct: 239 DPHNVAKTSKNIWLFAQNRWIQDRSLQAAVNEAYRSLLMHGEYPIAAVWVEVDPDCVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM----------------- 341
           +HP KS ++F++P++    +  +++  + +      S ++ +                  
Sbjct: 299 IHPTKSQVKFQDPSLAFRAVAAALRGTLEQAPWIKRSDVATQNVTMPLTQNSSEEFKSTD 358

Query: 342 -ISSFHQDNAPK------------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
            + +F     P+            T   K   S   +   +   +   +T   L      
Sbjct: 359 GLPNFASQPMPQQNLRFQDNSLEVTQFQKKEFSFPASSFPVSSLQQPQTTYQALAESAAQ 418

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                   EE+   ++       Q +  YI++Q+ D LV VDQHAAHER++FEK+   + 
Sbjct: 419 RESFAPKAEEASLGYWSSLEVLGQANLTYIVTQSRDKLVFVDQHAAHERVVFEKLMNAWK 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             K+  Q  L P  ID+   +   ++   +++ RLG+  E  GP  + ++  P ++ + +
Sbjct: 479 GGKVDIQDFLFPLAIDMSPEKVEGLLTMAKEMERLGVFIEALGPGTVGVKAAPLMIKESS 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
           +  +L  +  EI+D   +Y+L+  + +I ATMAC+  +R+G+ +   +M  LLR+M+  P
Sbjct: 539 LSGVLDKMATEIVDQGGSYSLERTVGDICATMACHSVVRAGQSLSPDQMRSLLRDMDMFP 598

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            SS C HGRP  ++     +EK FGR
Sbjct: 599 LSSFCPHGRPVSVEYPYYKLEKDFGR 624


>gi|154150760|ref|YP_001404378.1| DNA mismatch repair protein [Candidatus Methanoregula boonei 6A8]
 gi|153999312|gb|ABS55735.1| DNA mismatch repair protein MutL [Methanoregula boonei 6A8]
          Length = 612

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 283/608 (46%), Gaps = 22/608 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNG 60
           IR L    +NQIAAGE+IERP+  +KE++EN++DA +  +   I    GG +  ++TD+G
Sbjct: 10  IRVLDPATVNQIAAGEVIERPASVVKEMVENAIDAGARTIRIDITSVQGGITAIKVTDDG 69

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT- 117
            GM+  +  +A   H TSKI   DD  +IH+ GFRGEAL SI A++ +TL+++P  ++  
Sbjct: 70  CGMSPVDAELAFVPHATSKIHTLDDLFSIHSLGFRGEALASIAAIAKVTLITKPQGSDRV 129

Query: 118 -GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G +I + G +I          GT V V +LFF  PAR  F KS   E   I  ++  + 
Sbjct: 130 PGTRIVVVGGEIQLRGGTGAPEGTSVLVEELFFNTPARKKFQKSLTTEIARIHGILEGLC 189

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +A P++SF        +         G   + I+++ G +     +        + + GY
Sbjct: 190 LACPQISFKVFHNNREQL---ATERTGRPLDTIARIFGNESARELIPAAAALPFMRISGY 246

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P  +R + ++  + INGR +    + + IR  Y   +P GRYPV  L LEID R VD
Sbjct: 247 ISRPALSRKDHDRILIAINGRYISSPPVTTAIREGYGTLLPHGRYPVAFLSLEIDTRLVD 306

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +NVHP K  +R      I + + ++++ A+    +       K +        +  + +P
Sbjct: 307 INVHPTKKEVRLTKEKEITDGVREAVRAALASGDLIPEVNAPKPVYRKLDAGGSDLSPVP 366

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV---------EESEATHYQLG 407
             A                  T         T +   D                      
Sbjct: 367 YVAEPAEPYCAGTLPSAVSTGTLSPFTEPTHTGTVATDYRLRQTELASGVPPVTAVVPEM 426

Query: 408 IACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
               QI   YI+++   G L+I+DQHAAHER+ +E++ +   +    +Q LL P II   
Sbjct: 427 DVIGQIGGIYILAEAAGGELIIIDQHAAHERIFYEQVTRSMAAR--QAQELLVPAIIHCP 484

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             + A++      L + G+  E FG  +  +R +PA++ K   P ++ D++ +++     
Sbjct: 485 PKDTAILKSLIPALAQEGVIIEEFGAGSFLVRAVPALMGKVEGPAMIDDLVSDLLHKDLD 544

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             + DR E +   +AC  +I++G      +  RL+ ++        C HGRPT ++   +
Sbjct: 545 RPVSDR-ERLTRIIACRSAIKAGTVCTVEQCRRLISQLRATTTPFTCPHGRPTMVRFTRA 603

Query: 587 DIEKLFGR 594
            ++++F R
Sbjct: 604 KLDEMFKR 611


>gi|116331748|ref|YP_801466.1| DNA mismatch repair enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280513|sp|Q04QW2|MUTL_LEPBJ RecName: Full=DNA mismatch repair protein mutL
 gi|116125437|gb|ABJ76708.1| DNA mismatch repair enzyme [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 596

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 189/600 (31%), Positives = 305/600 (50%), Gaps = 14/600 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS ++INQIAAGE+IE     +KEL+ENS+DA +++++     GG S  +ITDNG 
Sbjct: 3   KIQELSPELINQIAAGEVIESAHSVVKELMENSMDAGATQMDIESKDGGLSLLRITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+I  A++RH TSKI D  D  N+ ++GFRGEAL SI +VS LTL S      T  
Sbjct: 63  GIDPEDIEPALKRHATSKIRDYGDLENVLSYGFRGEALASIASVSRLTLESGIKNQKTAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G KIS    +    GT + V +LFF  P R  FLKS + E   I D +   A+A 
Sbjct: 123 KICSIGGKISEKEEIPGFVGTKILVEELFFNTPVRRKFLKSVRSEDKKIRDRVTTQALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F         + +    +  N  +RI  + GE+F ++ +E++ +   +   GY   
Sbjct: 183 HDVRFRLFQDGKEVFVL---PSRENKKDRIVDLFGENFRDHLLEVSLERGGLNATGYISD 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F + N    +VF+NGR V+ K+  + ++ AY E +P   +P   L  EIDP +VDVNV
Sbjct: 240 PDFYKSNRTGQFVFVNGRPVEIKYGSTLLKKAYDELLPPNGHPYCFLFFEIDPSRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  IRF +      F +  IQK +      +   L K+++    +     +    ++
Sbjct: 300 HPAKKEIRFLDEEGFNGFFLTLIQKELRSSTPVSFLELKKRLLRPTPETFKTSSLYQAHS 359

Query: 360 TSLTNTQE----KLFLQENRLSTNDL-LPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           +S +        +LF +  R    DL       + S   D V +  +   +       + 
Sbjct: 360 SSRSGESPLLSRELFTEVPRQEGFDLDRMGPGASLSALTDNVVKHSSFVPK--KHFGVLF 417

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + +I+++  DG  I+DQH AHER+ +E++ +         Q LLTP  ID+ + E   I+
Sbjct: 418 ETFILAEAEDGFCIIDQHTAHERIRYEEVLRKLEKKNYGIQPLLTPIRIDVSKQEQEDIL 477

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              ++   +GI  +  G +++ +REIPA +      +++ D ++         T  +  +
Sbjct: 478 NRKKEYEEVGIFLDPLGEDSVVLREIPAYMEPGEEKEIILDFLN--RTEGKETTEPELYD 535

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   +AC  +I+ G  +    +  +L  +    N S+C HGRPT +KL   D+E++F R
Sbjct: 536 LMAKCVACRSAIKKGDHLSDPILAEILNRLSYCENPSRCPHGRPTLVKLSRDDLERMFHR 595


>gi|45658356|ref|YP_002442.1| DNA mismatch repair protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601599|gb|AAS71079.1| DNA mismatch repair protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 597

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/595 (30%), Positives = 297/595 (49%), Gaps = 7/595 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS ++INQIAAGE+IE     +KEL+ENS+DA +++V+     GG S  +ITDNG 
Sbjct: 7   KIQELSPELINQIAAGEVIESAHSVVKELMENSMDASATQVDVESKDGGLSLLRITDNGT 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A++RH TSKI D  D  ++ ++GFRGEAL SI +VS LTL S   +  T  
Sbjct: 67  GIEPEDLEPALKRHATSKIQDYKDLESVLSYGFRGEALASIASVSRLTLESGTKEQKTAW 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KIS    +    GT + V +LFF  P R  FLKS + E   I D +   A+A 
Sbjct: 127 KTRSVAGKISEKEEIPGFIGTKILVEELFFNTPVRRKFLKSIRSEDKKIRDRVTTQALAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F         + +    T  N  ERI  + GE+F ++ +E++ +   I   GY   
Sbjct: 187 EDVRFRLFQDGKEVFVL---PTRENKKERIIDLFGENFRDHLLEVSLERGGIQATGYISD 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F + N    ++FINGR ++ K+    ++ AY E +P   +P   L  EIDP +VDVNV
Sbjct: 244 PDFYKSNRTGQFIFINGRPIEIKYSSVLLKKAYDELLPPNGHPYCFLFFEIDPSRVDVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  IRF +      F +  IQK +      +   L K+++    + ++  +     +
Sbjct: 304 HPAKREIRFLDEDGFNGFFLALIQKELRSSTPVSFLELKKRLLKPAPETHSTTSFYQARS 363

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           +       +             L    P  S      E  + + +        + + +I+
Sbjct: 364 SGKNPLLGRELFSGVSKQEGFELDRMGPGVSLSELTDERVKHSSFVPKKHFGVLFETFIL 423

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  DG  I+DQH AHER+ +E++ +         Q LLTP  ID+ + E   I+   ++
Sbjct: 424 AEAEDGFYIIDQHTAHERIRYEEVLRKLEKRNYGIQPLLTPIRIDVSKQEQEDILNRKKE 483

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
              +GI  +  G ++I +REIPA +      +++ D ++         +  +  + +   
Sbjct: 484 YEEVGIFLDPLGEDSIVLREIPAYMEPGQEKEIVLDFLN--RTEGKETSEPELYDLMAKC 541

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  +I+ G ++    +  +L  +    N S+C HGRPT +KL   D+E++F R
Sbjct: 542 VACRSAIKKGDQLSDPILAEILNRLSYCENPSRCPHGRPTLVKLSRDDLERMFHR 596


>gi|312143590|ref|YP_003995036.1| DNA mismatch repair protein MutL [Halanaerobium sp. 'sapolanicus']
 gi|311904241|gb|ADQ14682.1| DNA mismatch repair protein MutL [Halanaerobium sp. 'sapolanicus']
          Length = 612

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 180/612 (29%), Positives = 316/612 (51%), Gaps = 23/612 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L + + NQI+AGE++ERP+  +KELIENS+DA +  +E  +  GGK F ++ D+G G
Sbjct: 4   IKQLPQNVANQISAGEVVERPASIVKELIENSIDAGAKNIEVRVKEGGKKFIKVKDDGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+I  A  R+ TSKI D  D  ++++ GFRGEAL SI +V+ + ++SR      G +
Sbjct: 64  ILPEDIKAAFNRYATSKIKDIDDLYSLYSLGFRGEALASIASVAEVEMLSRHKSKENGVK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G ++   +P A   GT V+VRDLF+  PAR  +LK+   E + I  ++   A+A  
Sbjct: 124 IRLKGGEVIENKPAASTIGTEVKVRDLFYNTPARYKYLKTTSTEFSHIIRIVNAEAVANN 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF          ++     NG   + I  + GE+  +N + ++ +   I L GY   P
Sbjct: 184 EISFKLYHNNK---QLLSTPGNGKLKDCIYALYGEEIADNLLAIDIEDRYIKLSGYIARP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R   +    F NGR + +      +  AY++ I  GR P+V L ++I+P  VDVNVH
Sbjct: 241 EKTRAGRSHELFFANGRPIHNNLAAKAVENAYSKLIDPGRKPIVFLFIKINPILVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------FH 346
           P K  ++F    II + I + ++K +     +T   L+    S               F 
Sbjct: 301 PTKKEVKFSRSQIIYDVISKGVRKTLKAADPTTRIKLNSSNDSKDNEVNTAPVYEKQVFK 360

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPVEESEAT 402
           +    K    +      N   K   +E + + N     +          + + +  +++ 
Sbjct: 361 EQGRLKNISDQKKNMPFNKSRKHSAEELQKNINYSEKKEGLKEQFAEDVNREYLINNKSA 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
                   AQI  +Y++ +T +GL I+DQH AHER+++EK+ ++++     +Q+LL P  
Sbjct: 421 KEDKFKFLAQIFNSYLLIETPEGLKIIDQHNAHERILYEKLYKEYDEKNTATQSLLIPVK 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           I+L   E  L+ E+ +    LGI    FG N I I+E+P +L  K+   ++ ++I E+ +
Sbjct: 481 IELTAEEKQLVDEYKQSFQELGIDFSEFGKNTILIQEVPVLLKNKSTRNIIEELIAELAE 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              T +  +  + ++  +AC  ++++G+ + + E  R+++E+ ++ N  +C H RP  I 
Sbjct: 541 EGKTKSAAEMQKTMIEYLACRTAVKAGQPLNNQESLRIIKELFESENPYRCPHSRPVMIN 600

Query: 583 LKLSDIEKLFGR 594
           +   +IEK  GR
Sbjct: 601 ISREEIEKGIGR 612


>gi|256419867|ref|YP_003120520.1| DNA mismatch repair protein MutL [Chitinophaga pinensis DSM 2588]
 gi|256034775|gb|ACU58319.1| DNA mismatch repair protein MutL [Chitinophaga pinensis DSM 2588]
          Length = 630

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/631 (29%), Positives = 311/631 (49%), Gaps = 45/631 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+ A+KEL+EN++DA ++ ++ +I   GK   Q+ DNG G
Sbjct: 5   INLLPDNIANQIAAGEVIQRPASAVKELLENAVDAGATEIQLIIRDAGKELVQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M  +RH TSKI   +D  +I T GFRGEAL SI AVS + L +R   +  G  
Sbjct: 65  MSETDARMCFERHATSKIQTINDLFSIRTMGFRGEALASIAAVSQVELKTRLRGSEIGTY 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I    +          GT + +++LFF +PAR NFLKS   E   I D   R+A+A+P
Sbjct: 125 IEIDNSAVKKQEMCQTAEGTSIAMKNLFFNVPARRNFLKSNAAEMRHIVDEFIRVAMAFP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ FT +       +  F    G+  +RI  ++G+ +    V + E ++ + + G+ G P
Sbjct: 185 QIQFTLTNN----TQQLFYLEKGSLKQRIIAILGQHYNARIVSVKETTDYMNVHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+N R ++  ++   I  A+AE IP   +P+ VL +++DP  VD+NVH
Sbjct: 241 ETAKKTRGDQFFFVNNRFIKSPYLHHAIMNAFAEMIPADSFPLYVLFIDLDPGHVDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  I+F +  ++  F+  +++ A+ +  I+ +               +      + A 
Sbjct: 301 PTKQEIKFDDEKLMYAFVQSAVKHALAQFNITPTLDFGLDPGIQQLDAVSKPFTEQQQAK 360

Query: 361 SLTNTQEKLFLQENRLSTNDLLPS----------------------------DDPTYSED 392
           S+  +  K F Q N+  T D   +                             + +Y+  
Sbjct: 361 SVNTSLYKSFTQANQAHTIDKSSNLKHWKDLYGSGESNVTYTETETETMDSPQEESYTTH 420

Query: 393 NDPVEESEATHYQLGIACA----------QIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           +  +E   +    +               Q+HQ YI+SQ   G +++DQ AAHER+++E+
Sbjct: 421 STTIESRSSATSMIDEGWQDTSIDQKVPVQVHQQYILSQIKSGFILIDQQAAHERILYER 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            ++    T I +Q  L P+ + LL  + ALIME   DL  LG   E FG N   +R  PA
Sbjct: 481 YQRAVQETAIPTQQSLFPQTLQLLPADAALIMEMIPDLQILGYDLEPFGNNTFVVRGTPA 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            +   N    +  ++++    S    L  R E ++ +MA   SI++G+ + + EM  ++ 
Sbjct: 541 DIQSGNEQASIEGLLEQFKHFSHELKLP-RREQLIRSMARNNSIQAGKSLSTREMQNIID 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E+      +    G+ T+I  KL+D+ K+FG
Sbjct: 600 ELFACTMPNSSPGGKYTYISFKLTDLAKMFG 630


>gi|312898808|ref|ZP_07758196.1| DNA mismatch repair protein [Megasphaera micronuciformis F0359]
 gi|310619970|gb|EFQ03542.1| DNA mismatch repair protein [Megasphaera micronuciformis F0359]
          Length = 627

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 178/628 (28%), Positives = 289/628 (46%), Gaps = 42/628 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L EK  N+IAAGE++ERPS  IKEL EN+LDA ++ VE  IA GG S+ +++DNG G
Sbjct: 5   IHVLDEKTANKIAAGEVVERPSSVIKELTENALDAGATTVEIEIADGGSSYMRVSDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E+   ++ RH TSKIS  +D  +I + GFRGEA+PSI AVS L + +R    +   +
Sbjct: 65  MSEEDAKKSIIRHGTSKISSIEDIFSITSLGFRGEAVPSIAAVSELVMTTRMNDTDLAFR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +SG  +        + GT +EVR+LFF  PAR  F+KSE+ E++ I+D+I ++A+  P
Sbjct: 125 MVLSGGSVKEEEHTGASVGTTMEVRNLFFNTPARKKFMKSERTESSKISDIITKLALTRP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+FTF        +       G+  E I+ + G         +  ++   T+ G+ G P
Sbjct: 185 DVAFTFINNGRTVLQ---TGGTGDDLETIAAIYGAAVAKEVFPVTYENENFTIHGFVGKP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  +         +N R + +  +   I  AY   +P   YP  +L +E DP  +DVNVH
Sbjct: 242 SLLKSTRAWQTCIVNRRVIHNAVVFKAIENAYHAMLPKSGYPFALLYVETDPATIDVNVH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK+ I+F +   +   +   I  A+  +           + +   +   P   +     
Sbjct: 302 PAKTEIKFADEQQMYRAVYHCIIMALMSREKPEQIATPVNLSTRQIEKAVPAKEVENRQG 361

Query: 361 SLT----------------------------NTQEKLFLQENRLSTNDLLPSDDPTY--- 389
           S T                              Q+K +  E  +        +  +    
Sbjct: 362 SFTFSTPRDGGFSTEGRKNNGGSLEHGYVPVQRQDKPYTPEPHVKAYAAGEENPFSAVRE 421

Query: 390 ---SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                  +           + I    +   YI+++  + L I+DQHAAHER+ ++K    
Sbjct: 422 ELSESMKEHSVIHFDGDEDVFIPLGAVADCYIVAKKGEDLYIIDQHAAHERVRYDKF--C 479

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             +  + SQ LLT E ++    +  L  E +E    LG      GP  + +  IPA L  
Sbjct: 480 KRTESMPSQQLLTAEFVEADSSDMQLFSEKEEVFRDLGYIYTEAGPTTLRMEAIPADLPT 539

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            +I   L++I   + +S  T        + LA ++C+G++++G  +   EM  LL  +  
Sbjct: 540 SHIADSLQEICHILHESPQTDKA-TLRHSSLAYLSCHGAVKAGDTLNIREMKELLEALFH 598

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                 C HGRP  ++    ++ KLF R
Sbjct: 599 TETPYVCPHGRPIIVRFTPDELAKLFKR 626


>gi|283768572|ref|ZP_06341484.1| DNA mismatch repair protein, C-terminal domain protein [Bulleidia
           extructa W1219]
 gi|283104964|gb|EFC06336.1| DNA mismatch repair protein, C-terminal domain protein [Bulleidia
           extructa W1219]
          Length = 577

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 195/596 (32%), Positives = 301/596 (50%), Gaps = 24/596 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L   I N IAAGE++ERPS  +KELIEN++DA+S++++  I  GG    ++ DNG 
Sbjct: 3   RIKQLEAHIANMIAAGEVVERPSGVVKELIENAIDAQSTKIKISIEEGGIQRIRVEDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++    +RH TSKI    D  +IH+ GFRGEALPSI +VS ++L+S       G 
Sbjct: 63  GMDKEDVVNCFKRHATSKIFKEADLWSIHSLGFRGEALPSIASVSKVSLIS--HNGEKGH 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I      ++     N GT + V  LF+  PARL  ++S   ET+L+  VI + A+AY
Sbjct: 121 RIMIQYGIQKAIESYPANQGTDITVEGLFYQTPARLKHMRSAAYETSLVLSVIHKFALAY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFTF +     ++    + +GN  E I  V G     N V    +  +  ++GY   
Sbjct: 181 PEISFTFISDDKVSFQ---TTGSGNLKEVIFLVYGRSVAENLVPFEFRDQDFYVRGYGVK 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N  ++F NGR V+   +   ++  Y + I  GRYP+VVL +E+DP  +DVNV
Sbjct: 238 PLITRSARNHIHLFFNGRMVRQYRLDQAVQHGYEDFIVKGRYPIVVLSMELDPHLIDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  IR      +   I   I+KA+    ++            ++         P   
Sbjct: 298 HPSKWEIRLSKLANLEALIENGIRKALMGDRLAPEIETGVSRQEVYYTQTQMDLKTP--- 354

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDD-PTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                      +QEN++  N    + +  T+ +  +P+ E   T         Q+H  +I
Sbjct: 355 -----------IQENKVEWNSQPTAQESFTFPKQEEPIYEERKTTLPQMQVIGQLHDKFI 403

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +    +GL I+DQHAA ER+ FE+  Q  N    + Q LL P ++         + E +E
Sbjct: 404 LCAYEEGLAILDQHAAQERVHFEEYVQKLNQNP-SMQDLLVPMMLHSDRTVVERVQEVNE 462

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  L I  E FG N+  +R IP  L +  +   L+D++D   +       +   ++I A
Sbjct: 463 ALKDLHITLEPFGENSFVLRTIPIWLKELEMEPFLQDVLDGFKNDQEIKYTRLERKHI-A 521

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC+ SIR  R +   EM  ++R++    N   C HGRPT I LK  ++ K F R
Sbjct: 522 TLACHHSIRFNRSLTVEEMKEVVRQLYTCENPYHCPHGRPTIIFLKEKELVKEFYR 577


>gi|297588420|ref|ZP_06947063.1| DNA mismatch repair protein HexB [Finegoldia magna ATCC 53516]
 gi|297573793|gb|EFH92514.1| DNA mismatch repair protein HexB [Finegoldia magna ATCC 53516]
          Length = 627

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/629 (29%), Positives = 302/629 (48%), Gaps = 42/629 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LSE  I +IAAGE+IERP   IKEL+ENS+DA S  +   I  GGK F  ++DNG G
Sbjct: 2   IKLLSEDTIQKIAAGEVIERPVSVIKELVENSIDAGSDTIVVEIKNGGKDFISVSDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   EI +A +RH TSK+   DD  +I T GFRGEAL SI AVS L++ +R      G +
Sbjct: 62  IEKNEIELAFKRHSTSKLEKFDDLYDIRTLGFRGEALASILAVSKLSVSTRTKSEKIGKK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     K+ S   VAMN GT + ++DLF+ +P R  F+K++Q E NLIT  + + AI   
Sbjct: 122 VEFRNSKVISESDVAMNVGTKIVIKDLFYNVPVRKKFMKTDQTEANLITTTMYKFAICNT 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VS  +       ++      N +  E I  + G    NN ++++  S +  + GY    
Sbjct: 182 DVSIKYIKDNKTLFETK---KNSSIRENIINLFGTSMSNNLLDIDINSRDYKIHGYISNN 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N    Y+F+NGR V+ + I +T+ + Y   IP GR+P+  L  EI+P+ VDVNVH
Sbjct: 239 NLYRANRQMQYIFLNGRFVKSEDIRNTVESNYKSVIPNGRFPLFWLFFEINPKLVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAP------ 351
           P K  ++      I   + + ++  +         + S+  +       ++         
Sbjct: 299 PNKQKVKISIIDEILEELNKKVRFLLENNASIANISQSIPDEDKYKDLRRNYFESDSNLT 358

Query: 352 -----KTHLPKYATSLTNTQEKLF-------------------LQENRLSTNDLLPSDDP 387
                K   P ++ +L N   KL                      E+    N ++  ++ 
Sbjct: 359 NYKYDKVSEPTFSYNLFNDNSKLSNFRNIKYNDKSEDIIRNPKTTEDFFGGNKIVNQNNL 418

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERLIFEKMRQ 445
              +      ES    Y        + + Y+++  +    + + DQHA HER+ +EK+ +
Sbjct: 419 FNKDSEQIKVESSLKKYDKFDILTVLFKTYVLAKDEFDSKIYLFDQHACHERINYEKLTK 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                ++ SQ L  P  I L +    + + +      LG +++ F  +++ IR +P +  
Sbjct: 479 QMQDKEVVSQNLAFPVNISLTDDLMEIYVNNKNIFEELGYESDVFSDDSVVIRAVPYLFG 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             N   L  DI+D I     +    D IE+ +   +C  S+++G  + + E+ +LL ++ 
Sbjct: 539 NSNAEFLFTDILDTIA--KNSNDPFDVIESKVIKRSCKMSVKAGDTLSNFEIIKLLEDLF 596

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           K      C HGRPTFI++   D+EK+F R
Sbjct: 597 KCEYPLTCPHGRPTFIEMNEKDLEKMFMR 625


>gi|254672433|emb|CBA05801.1| DNA mismatch repair protein MutL [Neisseria meningitidis alpha275]
          Length = 631

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/632 (31%), Positives = 318/632 (50%), Gaps = 69/632 (10%)

Query: 28  KELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFS 85
           KE++ENS+DA ++ ++  + GGG     ++DNG G+  ++I +A+ RH TSKI   +D  
Sbjct: 2   KEIVENSIDAGATAIDVELDGGGIRLIHVSDNGGGIHPDDIELALHRHATSKIKTLNDLE 61

Query: 86  NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVR 145
           ++ + GFRGE L SI +VS LTL SR   ++   Q+     K+SS        GT +E  
Sbjct: 62  HVASMGFRGEGLASIASVSRLTLTSRQEDSSHATQVKAEDGKLSSPTAATHPVGTTIEAA 121

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
           +LFF  PAR  FLKSE  E      ++ R+A+A+P ++F+        +K+  QS     
Sbjct: 122 ELFFNTPARRKFLKSENTEYAHCATMLERLALAHPHIAFSLKRDGKQVFKLPAQS----L 177

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFIL 265
            ERI+ ++G+DF   ++E++  S  + L G    PTF +G  ++ Y F+N R V+DK +L
Sbjct: 178 HERIAAIVGDDFQTASLEIDSGSGALRLYGAIAKPTFAKGKTDKQYCFVNHRFVRDKVML 237

Query: 266 STIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
             ++ AY + +     P  VL L++ P  VDVNVHP K+ IRFR+   +   +  ++ KA
Sbjct: 238 HAVKQAYRDVLHNALTPAFVLFLDLPPEAVDVNVHPTKTEIRFRDSQQVHQLVFHTLNKA 297

Query: 326 INK------------------------------------KGISTSSVLSKKMISSFHQDN 349
           +                                          ++     K  +     +
Sbjct: 298 LADTRANLTESVGNAGEVLHDITGVVSTPMPSENDSENLFDSVSNYPTGNKSDTHNAFGS 357

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT-----------YSEDNDPVEE 398
           + KT    Y ++    Q  L L+E+R + N        T            +   +   E
Sbjct: 358 SGKTAPMPYQSAYAPQQRSLSLRESRAAMNTYAELYKKTDDIDLELSRFEQARFGNMPSE 417

Query: 399 SEATHYQL---------------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           + A                    G A AQ+   YI++Q  D L+++D HAA ER+ +EKM
Sbjct: 418 TPAPQTDTPLSDGIPSQSELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKM 477

Query: 444 RQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
           ++       + SQ LL P        ECA + +H + L   G++    G N +A+R +PA
Sbjct: 478 KRQRQENGRLQSQRLLIPVTFAASHEECAALADHADALAGFGLELSDMGGNTLAVRTVPA 537

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +L K ++  L +D++ E+    ++ T+++    ILATM+C+GS+R+GR++   EMN LLR
Sbjct: 538 MLGKADVVSLAKDVLGELAQVGSSQTIEEHENRILATMSCHGSVRAGRRLTLPEMNALLR 597

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +ME  P S+QCNHGRPT++KL L +++ LF R
Sbjct: 598 DMENTPRSNQCNHGRPTWVKLTLKELDALFLR 629


>gi|163756800|ref|ZP_02163909.1| DNA mismatch repair protein [Kordia algicida OT-1]
 gi|161323189|gb|EDP94529.1| DNA mismatch repair protein [Kordia algicida OT-1]
          Length = 620

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 158/621 (25%), Positives = 303/621 (48%), Gaps = 37/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+++RP+  +KEL+EN++DA+++ ++ ++   GK+   + DNGFG
Sbjct: 5   IRLLPDHVANQIAAGEVVQRPASVVKELLENAIDAKATEIKLIVKEAGKTLIHVIDNGFG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  ++D  N++T GFRGEAL SI A++H+ L ++   +  G +
Sbjct: 65  MSETDARLSFERHATSKIQAAEDLFNLNTKGFRGEALASIAAIAHVELQTKKEADELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G K+ +   +    GT + V++LF+ IPAR NFLKS+ VE   I D  +R+A+A+P
Sbjct: 125 IKIEGSKLITQEVITTPTGTSIAVKNLFYNIPARRNFLKSDAVELRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F      +  + +       N+ +RI  ++G       V + E ++ + + G+ G P
Sbjct: 185 DIGFVLYHNGNELFNLP----KSNYRQRIVNILGGKTNEKLVPIQEDTDIVKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + + N+ + F+N R ++  ++   I  A+   +     P   + LE+ P  +D+N+H
Sbjct: 241 EFAKKSRNEQFFFVNNRFIKSPYLHHAINAAFEGLLKEKMQPSYFIYLEVHPETIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-------- 352
           P K+ I+F +   +   +  +++ ++ +  I+      +        D   K        
Sbjct: 301 PTKTEIKFDDEHSLYAMLRATVKHSLGQFNIAPVLDFDRDANLDTPYDYKNKQAAVPNIQ 360

Query: 353 ---------------------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                                     Y    T   E L++     S ++   +++  + E
Sbjct: 361 VDRSFNPFADEKKTAGNTTTQPRYTNYKKESTEGWESLYVGLESKSNSNQFSTENIEF-E 419

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
             +                 Q+H+ YI+S    G+VI+DQH AH+R+++E++ ++   ++
Sbjct: 420 SEEMTSSLFTNEEPRETLTYQLHRKYIVSSIKSGIVIIDQHRAHQRVLYEQLLRNITVSE 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
             SQ LL P        E AL+ E  E L  +G        + I +  IP+ +S+  +  
Sbjct: 480 AVSQQLLFPVTFTFSTSEIALLKEVKESLENIGFMFSNITNDTIELSGIPSNISESELQI 539

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           ++  ++++        T   + + ++ ++A   +IR+G+K++  E   L+  +      +
Sbjct: 540 IIEQMLNDF-QGEIPDTGFSQTDVLVKSLAKSMAIRTGKKLEVEEQESLVNNLFACKEPN 598

Query: 572 QCNHGRPTFIKLKLSDIEKLF 592
                R  FI L + D++K F
Sbjct: 599 VSPFNRTIFITLSVDDLDKKF 619


>gi|158320585|ref|YP_001513092.1| DNA mismatch repair protein MutL [Alkaliphilus oremlandii OhILAs]
 gi|158140784|gb|ABW19096.1| DNA mismatch repair protein MutL [Alkaliphilus oremlandii OhILAs]
          Length = 616

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 206/616 (33%), Positives = 333/616 (54%), Gaps = 30/616 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L +  IN+IAAGE++E P   +KEL+EN++DA SS +   I  GGK + +ITDNG G
Sbjct: 5   IRLLDDLTINKIAAGEVVESPHSVVKELVENAIDAASSAIILEIQEGGKKYIRITDNGVG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E +  A  RH TSKI+  +D S + + GFRGEAL SI AV+ + +++RP     G  
Sbjct: 65  IKEEYVEAAFMRHSTSKIAHIEDLSRVESLGFRGEALASIAAVAQVEMITRPEGQQHGVL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G K+ +++ V    GT + V++LFF  PARL FLKS   ET  IT++I R++++ P
Sbjct: 125 IHINGGKVETIKKVGCPVGTTIIVKNLFFNTPARLKFLKSNNGETMKITEIITRLSLSNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF +    +  +       N    + I  V  ++   N + L +    +TL GY G P
Sbjct: 185 SISFKYINNNNIMFT---TPGNNMLSQAILSVFNKETFKNLILLEDHQEGMTLHGYIGQP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +F RGN N   VFINGR V++K I   I  AY E I + +YP+ +L L+I P  +DVNVH
Sbjct: 242 SFVRGNRNLQIVFINGRYVKNKVISRAIEVAYKEKIMINKYPICILNLKIHPSVLDVNVH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--------SVLSKKMISSFHQDNAPK 352
           PAK  ++F +   + +FI+++I KA+ K+ I  +        ++  K+      +    K
Sbjct: 302 PAKIEVKFEDEEKVYHFILKAILKALEKQSIVPNMLELAPRTNIDKKQPQRQILKVVEEK 361

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTN------------DLLPSDDPTYSEDNDPVEESE 400
                   SL + Q+++ +QE + + +            +++       S ++  + +S 
Sbjct: 362 QEDIVIGKSLASIQDQMSVQETKENYSKNLDFTSLKTPVEIVEEQIQIASVEDHNIVQSS 421

Query: 401 ATHYQLGIA--CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
             +  L       QI   YII +    + ++DQHAAHERL++   RQ+  + K+ SQ LL
Sbjct: 422 FLNSLLDRYHIVGQIFSTYIILENEGSMYLIDQHAAHERLLYNTFRQEIKAEKVASQRLL 481

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P +++L + +   ++ H     +LG + E FG N I IR++P IL +      + +I+D
Sbjct: 482 APMVLELSKEDYMFLLNHLYIFEKLGFEIENFGGNDIIIRQVPMILGRPQNFSFIYEILD 541

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           E+   +    +    E+ +A  AC  +I++  KM SIE+ +L+ ++ K      C HGRP
Sbjct: 542 EVRKYN---DVNAMFEDTIAKKACKEAIKANDKMDSIEIRKLIEDLSKLTPPLTCPHGRP 598

Query: 579 TFIKLKLSDIEKLFGR 594
             + ++  +IEK F R
Sbjct: 599 IILAMQKYEIEKHFKR 614


>gi|313884229|ref|ZP_07817995.1| DNA mismatch repair protein, C-terminal domain protein [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312620676|gb|EFR32099.1| DNA mismatch repair protein, C-terminal domain protein [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 656

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 173/648 (26%), Positives = 290/648 (44%), Gaps = 60/648 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+++   + NQIAAGE++ERP+  +KEL+ENS+DA +S +   +   G S   + DNG 
Sbjct: 3   KIKQMPAALSNQIAAGEVVERPASVVKELVENSIDAGASIISVYLEEAGISQIMVQDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E++ +A   H TSKI   +D  N+H+ GFRGEAL SIG+V+ + + S     +   
Sbjct: 63  GMDAEDLQLAFLPHATSKIYRLNDLFNVHSLGFRGEALASIGSVAKVRVESCQAGQDQAN 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I+G K+ +    A N GT +EV+ LF+  PARL  LK+ Q E   I   ++ MA+AY
Sbjct: 123 FVEIAGSKLMNQGQCAGNQGTKIEVKSLFYNTPARLKHLKTLQTELKHIIRFVQNMALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F+       + K+   S  G   E I+Q+   +     + LN   ++  + G+   
Sbjct: 183 PQIQFSLFNN---QQKLFQTSGRGRLQESIAQIYQANLARQLIALNVADDDFKVSGFISP 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R + N  + F+NGR V    +   +  AY   + +GRYP+ +L++++DPR VD NV
Sbjct: 240 PTLTRTSRNYIHWFVNGRAVYSNQLNQVLIKAYGRQLMIGRYPISILVIDLDPRLVDANV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  +R    + +   I   ++  + +     +                         
Sbjct: 300 HPTKQTVRLSKESELAKLIQDGVKACLGEVNPVPNLGQTLVAQDNYRLSERTIPLDLNGS 359

Query: 335 -----SVLSKKMISS----------FHQDNAPKTHLPKYAT-------------SLTNTQ 366
                S    +                Q+N  K  +  Y               S  N Q
Sbjct: 360 IGKVDSNFQHQQDPDQVDQEVENKLVRQENCSKPPMSHYQALEQALGIDRENSCSQGNDQ 419

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                     +   +L S+    SE  +   E +   +       QIH  Y+I+++  G 
Sbjct: 420 RHPTRALPDSNFKAVLDSEIQQSSEVYERETEKQGIDFAALRYVGQIHGTYLIAESESGF 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++DQHAA ERL +E          +    LL     +    +   I      L +LGI 
Sbjct: 480 YLIDQHAAQERLRYEHFMTYDPDVTLQQDLLLPHV-FEFSLEQMTTIEIIKPSLEKLGIF 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E  GPN+  +   P  +  +++  L+  ++D ++      T+    E  +   +C G+I
Sbjct: 539 LENLGPNSYQLPSYPNWILDEDLDDLIYGLVDRLLKEPD-LTVAQLKEASIIMSSCRGAI 597

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   +   E   L+++M    +   C HGRP F++     +EK+F R
Sbjct: 598 KANHYLAPKEAEALIKDMAHLEDPYHCPHGRPVFVEFDQKSLEKIFKR 645


>gi|169824441|ref|YP_001692052.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328]
 gi|167831246|dbj|BAG08162.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328]
          Length = 627

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 188/629 (29%), Positives = 304/629 (48%), Gaps = 42/629 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LSE  I +IAAGE+IERP   IKEL+ENS+DA S  +   I  GGK +  ++DNG G
Sbjct: 2   IKLLSEDTIQKIAAGEVIERPVSVIKELVENSIDAGSDTIIVEIKNGGKDYISVSDNGLG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   EI +A +RH TSK+   DD  +I T GFRGEAL SI AVS L + +R      G +
Sbjct: 62  IEKNEIELAFKRHSTSKLEKFDDLYDIRTLGFRGEALASILAVSKLIVSTRTKSEKIGKK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     K+ +   VAMN GT + ++DLF+ +P R  F+KS+Q E NLIT  + + AI   
Sbjct: 122 VEFRNSKVINESDVAMNVGTKIVIKDLFYNVPVRKKFMKSDQTEANLITTTMYKFAICNT 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VS  +       ++      N +  E I  + G    NN ++++  S++  + GY    
Sbjct: 182 DVSIKYIKDNKTLFETK---KNSSIKENIINLFGTSMSNNLIDIDISSHDYKIHGYISNN 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N    Y+F+NGR ++ + I +T+ + Y   IP GR+ +  L  EI+P+ VDVNVH
Sbjct: 239 NLYRANRQMQYIFLNGRFIKSEDIRNTVESNYKSVIPNGRFTLFWLFFEINPKLVDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAIN---KKGISTSSVLSKKMISSFHQDNAP------ 351
           P K  ++      I   + + ++  +    K    + S+          ++         
Sbjct: 299 PNKQKVKISILDEILEQLNKRVRFLLENNVKITNISQSIPDDDKYKDLRRNYFESDSNLT 358

Query: 352 -----KTHLPKYATSLTNTQEKLFLQEN------------RLSTNDLLPSDDPTYSEDND 394
                K   P Y+ +L N   KL    N            +  TN     +     +DN 
Sbjct: 359 NYKYDKVSEPTYSYNLFNDNSKLSNLRNIRYKDESEAFNKKPETNKYFFKEKDVAKQDNF 418

Query: 395 PVEESEAT-------HYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERLIFEKMRQ 445
            ++E+E          Y+       + + YI++  +    + + DQHA HER+ +EK+ +
Sbjct: 419 FLDENEQIKVESYLAKYEKFDILTVLFKTYILAKDEYDSKIYLFDQHACHERINYEKLTK 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                ++ SQ L  P  I L +    +   +      LG +++ F  +++ +R +P +  
Sbjct: 479 QMLDKEVVSQNLAFPINISLTDELMEIYTNNKSIFEELGYESDVFSDDSVVVRAVPYLFG 538

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             N   L  DI+D I     +    D IE+ +   +C  S+++G  + + E+ +LL ++ 
Sbjct: 539 NSNAEFLFTDILDTIA--KNSNDPFDVIESKVIKRSCKMSVKAGDTLSNFEIIKLLEDLF 596

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           K      C HGRPTFI++   D+EK+F R
Sbjct: 597 KCEYPLTCPHGRPTFIEMNEKDLEKMFMR 625


>gi|320526785|ref|ZP_08027975.1| DNA mismatch repair protein [Solobacterium moorei F0204]
 gi|320132753|gb|EFW25293.1| DNA mismatch repair protein [Solobacterium moorei F0204]
          Length = 609

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 173/614 (28%), Positives = 290/614 (47%), Gaps = 28/614 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L     N IAAGE++ERP   +KEL+EN++DA S+R+E  I  GG     + DNG 
Sbjct: 3   KIKQLDTLTANMIAAGEVVERPMGVVKELVENAIDAGSTRIEVNITEGGIQRLSVIDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +++  +   RH TSKI    D  +IHT GFRGEALPSI +VS + L +         
Sbjct: 63  GMDAQDAQLCFGRHATSKIQSQNDLWSIHTLGFRGEALPSISSVSRMVLST--SDGKDAT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++   + SV P   N GT + V  LF+  PARL  ++S   E +LI D++ + A+++
Sbjct: 121 KVVVAYGNVESVAPYPCNQGTEISVEGLFYQTPARLKHMRSAAYEASLIQDIVSKFALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F   +     ++    S  GN  E + QV G     NA+ ++    + T++GY   
Sbjct: 181 PEIAFILRSDDRESFR---TSGQGNLLEVVYQVFGRMAAENAIPVDFSDFDYTVKGYLIK 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  R +     +F+NGR V+   +   ++  Y + I  GRYP+ VL + +DP  +DVNV
Sbjct: 238 PSITRASRTGMNLFLNGRMVRTYKLYKAVQDGYEDFIVKGRYPICVLDISMDPHLLDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  +R      +   I  ++   +    ++ ++ + +     +   +     L + A
Sbjct: 298 HPSKWEVRLSKEIQLETLIKNNVANMLRGTILAPAAEVREARQEYYQPISFDTDRLIQEA 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-------------------ESE 400
                 Q +  + E   ST      +    + + +  E                   + +
Sbjct: 358 EYRKEQQRRQSIVEQVASTPQEEKVEKQEVTLEQEIAETEAELKRVSTQFEEEYPEYKPQ 417

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              +       Q+H+ +I+     GLVI+DQHAA ER+ +E+ +   N   +     L P
Sbjct: 418 QQVFPPMEVIGQLHEKFILCAAEKGLVIIDQHAAQERVHYEEYKAKLNQDPV-MMDCLVP 476

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             I         + E +  +  + +  E FG + + +  +P  +      Q L D+ID +
Sbjct: 477 ITIHAGNDLVRRVEEINAAVEDIHVVFEPFGKDTLVVHSVPVWMQDIEEIQFLNDVID-L 535

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
             +          +  +ATMAC+ SIR  R +   EM  ++R++    N   C HGRPTF
Sbjct: 536 FKNDRDIKYARMEKKKIATMACHHSIRFNRSLTMDEMKEVVRQLSLCENPYHCPHGRPTF 595

Query: 581 IKLKLSDIEKLFGR 594
           I L    + K F R
Sbjct: 596 ITLDEKTLVKEFLR 609


>gi|282880888|ref|ZP_06289581.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305270|gb|EFA97337.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 604

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 160/612 (26%), Positives = 298/612 (48%), Gaps = 32/612 (5%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA +S ++ ++   G++  Q+ D
Sbjct: 1   MKDIIQLLPDVVANQIAAGEVIQRPASVIKELVENAVDAGASAIDVLVVEAGRTSIQVID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG GM+  +  +A +RH TSKI   +D   + T GFRGEAL SI AV+ + L +R   ++
Sbjct: 61  NGKGMSGTDARLAFERHATSKIRQAEDLFALQTMGFRGEALASIAAVAQIELKTRREDDD 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  + I+G K+    P A   G+   V++LF+ +PAR  FLKS   E   I    +R+A
Sbjct: 121 LGTSLTIAGSKVKGQEPCACPTGSNFLVQNLFYNVPARRRFLKSNTTELKHIVTAFQRIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + YP+++FT  +  +    +          +RI  + G+    + + ++  +    + G+
Sbjct: 181 LVYPQIAFTLHSNGTELLNLRPCV----LRQRIVDIFGKRINQDLLPVSVDTTMCKISGF 236

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G P  ++    Q Y F+NGR ++  +    +  A+   IP G      +  E++P+++D
Sbjct: 237 VGKPESSKKKGVQQYFFVNGRYMRHPYFHKAVLNAFERLIPQGDQVPYFIYFELNPQEID 296

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF----------- 345
           VN+HP K+ I+F N   I   +  ++++A+       S   + +                
Sbjct: 297 VNIHPTKTEIKFENEQAIFQIVFAAVREAVGLFKEVPSIEFNNEGQPDIPVYSGHRDATA 356

Query: 346 ------HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
                 + +  P       +   ++  EKL+    +   N  L + D       + + E 
Sbjct: 357 APHVQTNPNYNPFQQTSIPSPHASSDWEKLYEGLEQTPENIALFNSDGIEQNVQNSLIEE 416

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           ++  +       Q    Y+++    GL+I+DQH AH R+++E+  Q     K  +Q +L 
Sbjct: 417 KSPVHY------QYKGQYLMTAVKSGLMIIDQHRAHVRILYERYLQQMKEGKEYAQKVLF 470

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           PE+I L   E  +  +   DL  +G +    G +  AI+ +PA +   ++ QL+ D++  
Sbjct: 471 PELIQLSPAEQIIFPKMMPDLAAMGFEFTSMGKSDYAIQSVPAGIEGLDMVQLVHDMLSS 530

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
            ++   +  + +  + +  ++A + +I +G+ + + EM  L+  +    N +    G+  
Sbjct: 531 ALEKD-SNAVHEIHQALALSLAKHAAIPTGQVLNNEEMENLINSLFGCQNVNYTPDGKSI 589

Query: 580 FIKLKLSDIEKL 591
              LK   IE+L
Sbjct: 590 LHILKQEKIEQL 601


>gi|153004950|ref|YP_001379275.1| DNA mismatch repair protein [Anaeromyxobacter sp. Fw109-5]
 gi|189030389|sp|A7HC45|MUTL_ANADF RecName: Full=DNA mismatch repair protein mutL
 gi|152028523|gb|ABS26291.1| DNA mismatch repair protein MutL [Anaeromyxobacter sp. Fw109-5]
          Length = 601

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 169/601 (28%), Positives = 304/601 (50%), Gaps = 11/601 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++NQIAAGE++ERP+  +KEL+EN+LDA ++ V   +  GG +  ++ D+G 
Sbjct: 3   RIQVLPPGLVNQIAAGEVVERPASVVKELVENALDAGATSVSIDVEEGGLALVRVADDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM++++  +A++RH TSK+ D    + I T GFRGEALP+I +V+   L + P ++  G 
Sbjct: 63  GMSADDAQLALERHATSKLRDAEGLAAIATMGFRGEALPAIASVARFRLDTAPAEDGAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G    S  PVA   GT +EVRDLFF  PAR  F+++   E+  +T+ + R+A+A 
Sbjct: 123 RVEVEGGGRPSSGPVARPRGTTIEVRDLFFNTPARRKFMRAAATESGHVTEAVVRLALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT  +           +   +     +Q +G D   + V ++     + ++G    
Sbjct: 183 PDVGFTLRSAGRLVLGSRAGAAAADRA---AQALGRDAHRHLVPVDAGRGNVRVRGLVCS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +       Y+F+NGR V+D+     +  A+A T+P GR+P  VL +E+   +VDVNV
Sbjct: 240 PDHSEATGRALYLFVNGRYVRDRGAAHAVLRAFAGTLPPGRHPAGVLFVELPLDRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF     + + +  +I   +                        P        
Sbjct: 300 HPQKLEVRFAEAREVYDALFHAIAGTLRTAPWLAHGRAGGSAPPGPVALTPPGGAGSDET 359

Query: 360 TSLTNTQEKLFLQENR-----LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
            ++     +    E         +     S    ++  ++      A ++       Q  
Sbjct: 360 AAVLAWAREAHAPEGSGALVPPPSPVPGASGTFAFAIPDEAGLARPAGYFASLRYVGQHA 419

Query: 415 QNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           + Y++ +   G LV++DQHA+HERL+F+++R+ F + K+  Q  L P+++ L       +
Sbjct: 420 RTYLLCEAQGGTLVVIDQHASHERLLFQRLREVFRTRKLPVQPFLLPQVVTLPPAVARAL 479

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
                +L RLG   E FG ++ A++  PA L+  ++  LL D+  ++    +   + + +
Sbjct: 480 EGGLPELARLGFDVEPFGGDSFAVKGAPAALAGVDLEALLLDLSAQLELVGSGTAVDEAL 539

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            ++LATMAC+ ++R+ +++   E   LL  ++     ++C HGRP   +L L+++E+  G
Sbjct: 540 HDLLATMACHAAVRANQEVAPEEARALLDGLDAIDFKARCPHGRPVVFELPLAELERRVG 599

Query: 594 R 594
           R
Sbjct: 600 R 600


>gi|284048548|ref|YP_003398887.1| DNA mismatch repair protein MutL [Acidaminococcus fermentans DSM
           20731]
 gi|283952769|gb|ADB47572.1| DNA mismatch repair protein MutL [Acidaminococcus fermentans DSM
           20731]
          Length = 662

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/664 (27%), Positives = 306/664 (46%), Gaps = 77/664 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K++ L +   NQIAAGE++E+P+  +KEL+ENSLDA +  +E  I  GG  F ++ DNG 
Sbjct: 4   KVQLLDQNTSNQIAAGEVVEKPASVVKELVENSLDAGADTIEVSIFAGGTEFIRVRDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM      MA+ RH TSKI  +DD   +HT GFRGEALPSI +VSH TL++R        
Sbjct: 64  GMDEANARMAILRHATSKIVKADDLLTLHTLGFRGEALPSIASVSHFTLLTREAGAEFAT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G +   V  +  + GT + V+DLF+ +PAR  FL++   E   I+D++ ++A++ 
Sbjct: 124 RITLDGGEDMDVESMGGDVGTTITVKDLFYNVPARRKFLRTVNTEGRYISDILSKIALSR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V    +              +G+  + I+ + G++     + ++   + ITL+G+   
Sbjct: 184 PDVHLVLTRDDKEVIN---TPGSGDLVDTIASLYGKEVTRELLTVDYAQDGITLKGFISR 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +G      +F+NGR + ++ +   I  AY   IP   +P  VL + ID   +D+NV
Sbjct: 241 PTLLKGTRQWQTLFVNGRCINNRMVSKAIDHAYQSQIPKAGFPFAVLNIGIDTHLIDINV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP KS I+F + + +   +   + +A+ +     S             +K   +      
Sbjct: 301 HPQKSEIKFGDESAVYRAVYHGLCQALTQPMAGKSEGDGTVALAQPGFRKREPAAAGSGQ 360

Query: 351 PKTHLP----------------------KYATSLT----------------NTQEKLFLQ 372
            +   P                       YA+S +                 T EK F  
Sbjct: 361 NRGPAPEEKPLFQGGDRGYQPRTSAFGRSYASSPSGSYGQPVWKVPDAISEETTEKFFAA 420

Query: 373 ENRLS----------------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ- 415
           + R                    D  P+ D T +  +D     EA    L      I   
Sbjct: 421 QRREDPVPGAEGAGEGAGIPLEEDGGPAPDGTAAPASDEALTEEARDGALSSGVDLIWPL 480

Query: 416 -----NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
                 +II+Q+   L ++DQHAAHER++++K        +I SQ LL P  +++   + 
Sbjct: 481 GQVDRVFIIAQSETALYLIDQHAAHERIMYDKF--IRQQQEIPSQQLLIPLFLNVTRPDV 538

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
            LI E+ E+  +LG+  E  G  ++ +  +PA +        + DI+  + ++       
Sbjct: 539 DLIEEYREEFLQLGVDVEPAGETSLRVSALPADVESSQAEGFIEDILKLLSENKKIKA-S 597

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           D  E++L   AC+ +IR+G  +   +M +L+ E+    +   C HGRP  I+L   ++  
Sbjct: 598 DLRESVLHYAACHSAIRAGEVLNIRQMRQLILELLNTEHPFTCPHGRPCMIQLTSDELYH 657

Query: 591 LFGR 594
           +F R
Sbjct: 658 MFKR 661


>gi|221633643|ref|YP_002522869.1| DNA mismatch repair protein HexB [Thermomicrobium roseum DSM 5159]
 gi|221156332|gb|ACM05459.1| DNA mismatch repair protein HexB [Thermomicrobium roseum DSM 5159]
          Length = 575

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 176/600 (29%), Positives = 313/600 (52%), Gaps = 32/600 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L E  + +IAAGE++ERP+  +KEL+EN+LDAE+  +   I  GG+   ++ D+G
Sbjct: 1   MPIVRLDEATVRRIAAGEVVERPASVVKELVENALDAEARTIRVEIVAGGRELIRVQDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+AV+RH TSK+   +D + + ++GFRGEAL +I AVS   ++SR P    G
Sbjct: 61  TGIPPDELPLAVERHATSKLHRFEDLARLASYGFRGEALAAISAVSECEIVSRVPDAPYG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A++ +   +   V P+   PGT+V VRDLF  +PAR  FL+ +  E  LI   +  +A+A
Sbjct: 121 ARLLVRYGRPGRVEPIGAAPGTVVTVRDLFANVPARRRFLRQDATEAALIQRTLAALALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS-NEITLQGYT 237
            P+V F  +        +     +G+  + +  V G +     + L E    EI +QG  
Sbjct: 181 RPEVRFELTNDGR---TVLATGGSGDLLDALIGVYGAETATQMLRLEEYCAGEIVVQGAV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+P  +R N    +V +N R V+ + +++ I  AY   + +GRYP+ V+ + +   +VDV
Sbjct: 238 GLPRVSRPNRQALFVLVNQRWVESRTLVAAIEQAYHTLLMVGRYPIGVVAVSLPGDRVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK---GISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  +RF +   +   + +++++ +              S    S   +       
Sbjct: 298 NVHPTKREVRFADERAVAAAVYEAVRRTLLAHVPENPPPPVTFSPLSPSVVQRRLQVADP 357

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
             + ++S   T E+L    +   + D                    A    +     Q+ 
Sbjct: 358 TRELSSSRPGTPEELVDAPSSTRSAD-------------------SANWLPVLRVLGQVR 398

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           Q YII++  DG+ ++DQHAAHER++ +++     +  +  Q LL P +++L   + A + 
Sbjct: 399 QAYIIAEGPDGMYLIDQHAAHERILLDRLLAQLEARGVEQQALLEPLVLELSPVQLATVE 458

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            + + L +LG + E FG  A+A+R +   + +++I Q+L  ++D++       T    +E
Sbjct: 459 RYRDALVQLGWELEPFGGAAVAVRAV-PAVVQRSIEQVLIAVLDDLAAGGRGTTP---LE 514

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +  + AC+ +IR+G+++   EM  L+R++E+    + C HGRPT + L   ++E+ F R
Sbjct: 515 RVAISTACHSAIRAGQELSLPEMRELIRQLEQCRVPNACAHGRPTVVHLSTEELERQFSR 574


>gi|313892627|ref|ZP_07826214.1| DNA mismatch repair protein, C-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
 gi|313119024|gb|EFR42229.1| DNA mismatch repair protein, C-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
          Length = 622

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/624 (29%), Positives = 298/624 (47%), Gaps = 38/624 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L EK INQIAAGE++ERP  A+KE++ENS+DA +S +E  IA GG ++ ++TDNG G
Sbjct: 4   IHLLDEKTINQIAAGEVVERPVNAVKEMVENSVDANASEIEVEIADGGITYIRVTDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  M++ RH TSKIS  D+  +I + GFRGEAL SI AVS  TL +R   N+ G Q
Sbjct: 64  MDKEDAEMSIIRHATSKISTVDNIFHISSLGFRGEALASIAAVSKFTLTTRQKDNSEGIQ 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I   KI+  + V    GT +EVR+LF+ +PAR  FLK+E+ E   I  +I +MA+++P
Sbjct: 124 LDIESGKITDSKIVGAPVGTTIEVRELFYNVPARKKFLKTERTEAGRINTIISKMALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F           +     NG   + ++ + G D  N    +   S+   L G    P
Sbjct: 184 TIAFRLINNGR---VVIETPGNGRLLDAVTSLYGIDVSNEMFTVEHSSDMYFLDGMISKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  + +     + +N R V+   I   I  AY   +P   YPV ++ L + P  +D+NVH
Sbjct: 241 SLLKSSRQYQTIIVNHRIVESPLISKAIDNAYHSLLPKTGYPVCIIKLTVPPESIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  I+F +   I   +  ++ K +  +  +                +    ++ K+  
Sbjct: 301 PQKREIKFEDEKEIFRLVYHAVLKTLTAQSEAAEIATEITYTPKHESVDEKDINIKKFEN 360

Query: 361 SL----------------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           +                         TQE  + + N  +  + L +     S   +    
Sbjct: 361 NYYSTKKGNDFVNLYWKDATDTYNNKTQENHYEKRNEYNPENDLKNIYSENSILENFQNN 420

Query: 399 SEATHYQLG--------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
            + +             I   Q+   +II      L I+DQHAAHER+ ++K+    ++ 
Sbjct: 421 EKQSERLFEDIKKEELVIPLGQVANCFIICVKGKELFIIDQHAAHERVRYDKL--AEHAE 478

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            I  Q +L P +I + + +  L  E  +D+ RLGI  E+ G + I I   P   S+ ++ 
Sbjct: 479 SIPVQNILIPHLITMDKQDIELFEERRKDIERLGIIFEQAGIDVIRITGAPEDFSESDME 538

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +++ D++      S     +     ++A  AC G+I++G  +   +M  L+ ++      
Sbjct: 539 RVIHDLLIAFNSQSEPSP-ETLRHRMMAYAACRGAIKAGDVLNIRQMKELISDLFMTSRP 597

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C HGRPT IK    ++ KLF R
Sbjct: 598 FVCPHGRPTIIKFTPEELGKLFKR 621


>gi|227536414|ref|ZP_03966463.1| DNA mismatch repair protein MutL [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243790|gb|EEI93805.1| DNA mismatch repair protein MutL [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 628

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/627 (28%), Positives = 328/627 (52%), Gaps = 41/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KELIEN++DA + +++ ++   GKS  Q+ DNG G
Sbjct: 5   IQLLPDAVANQIAAGEVVQRPASAVKELIENAIDAGADKIKLIVKDAGKSMIQVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +  +RH TSKI   +D  +I T GFRGEA+ SI A++H+ L +R  ++  G  
Sbjct: 65  MSVTDARLCFERHATSKIRKAEDLFSIRTMGFRGEAMASIAAIAHIELKTRRVEDELGTV 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P A++PGT + V++LFF IPAR NFLKS  VE   I D  +R+A+A+P
Sbjct: 125 IEIEGSKITDQHPEALSPGTSISVKNLFFNIPARRNFLKSNSVEMRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F+  +  +  Y +  ++      +RI  ++G ++    V + E+++ IT+ G+ G P
Sbjct: 185 EIFFSLHSDGNEVYHLPAET----LKQRIVHLLGNNYNQRLVPVEEETSIITINGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++D ++   +  AY E +    YP+ VL ++IDP ++D+NVH
Sbjct: 241 EFAKKTRGEQFFFVNKRFIKDPYLNHAVLNAYEEILSADSYPLYVLFIDIDPAKIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---------------- 344
           P K+ I++ +   I   +  +I++++ +  I+ +   +++   S                
Sbjct: 301 PTKTEIKYEDDKAIYAILRSAIKRSLGRYNIAPTLDFNQETGFSNMISQKPLEEIQAPTI 360

Query: 345 -FHQDNAPKTHLPKYATSLTNT-------QEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
            F+ D  P     K + S + +       ++K  + +N  +   +  ++  + ++     
Sbjct: 361 NFNPDFNPFEPGYKESASKSRSDNYTSGFEKKAGIPQNWDTLYQITENEATSSAQLPLLP 420

Query: 397 EESEATHY---------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            E E             Q      Q+H  +I+SQ   G +I+DQ AAHER++FE+ +   
Sbjct: 421 AEPEEEDIDINVPEVSVQQSKQFFQLHNRFIVSQIHSGFMIIDQQAAHERILFEQFQTHL 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS-K 506
              +  SQ  L P+ IDL   + AL+ E   ++  LG +   FG     +  IPA L   
Sbjct: 481 EQNQGISQQSLFPQTIDLNSADHALMEEILPEIQSLGFQLRPFGKTTYIVDGIPADLGSN 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            N   ++  ++++   + +   L  R EN+  ++A   +I+ G  + +  M  L+  +  
Sbjct: 541 VNEVAIIERLLEDFKHNKSELKLNKR-ENLARSLAKSAAIKPGTLLDNQAMAELIDRLFA 599

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFG 593
             + +   +G+P  I   LS++ + FG
Sbjct: 600 CESPNISLYGKPIIITFTLSELLEKFG 626


>gi|163787897|ref|ZP_02182343.1| DNA mismatch repair protein [Flavobacteriales bacterium ALC-1]
 gi|159876217|gb|EDP70275.1| DNA mismatch repair protein [Flavobacteriales bacterium ALC-1]
          Length = 616

 Score =  474 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 163/621 (26%), Positives = 302/621 (48%), Gaps = 33/621 (5%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I+ L + + NQIAAGE+++RP+  +KEL+EN++DA ++ ++ +I   GK+  Q+ D
Sbjct: 1   MTDIIQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGATEIKLIIKDAGKTLVQVID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG GM+  +  ++ +RH TSKI  ++D   ++T GFRGEAL SI A++H+ L ++ P++ 
Sbjct: 61  NGKGMSVTDARLSFERHATSKIKSAEDLFQLNTKGFRGEALASIAAIAHVELKTKRPEDE 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  I I G  + S        GT V V++LFF IPAR NFLKS+ VE   ITD   R+A
Sbjct: 121 LGTAIEIEGSTVKSQEVSVTPSGTSVAVKNLFFNIPARRNFLKSDTVELRHITDEFHRVA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +A+P ++F F    S+ + +    T+ N+ +R+  + G       V + E++  + + G+
Sbjct: 181 LAHPNIAFVFYHNGSDLFNV----TSENYRQRVVHIFGTKTNEKLVPVEEETEVLKISGF 236

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G P F++   ++ + F+N R ++  ++   I  A+   +  G +P   L L +DP+ +D
Sbjct: 237 VGKPEFSKKTKSEQFFFVNQRFIKSPYLNHAINAAFEGLLKDGYHPSYFLNLTVDPKTID 296

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +N+HP K+ I+F +   +   +  +++ ++ +  I+      ++   +   +   KT   
Sbjct: 297 INIHPTKTEIKFDDEHTLYAILRSAVKHSLGQFNIAPILDFEQQSNFNTPYNYKDKTASS 356

Query: 357 ------------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                                    +  +  ++ E L++     S N        T+  D
Sbjct: 357 PAIEVDSDFNPFSEGANGSRKQSTSFKQAPADSWEGLYVGLESKSNNSESDFSQVTFESD 416

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                    +  +      Q+ Q YI+S    G++++DQ+ AH+R+++E   +     + 
Sbjct: 417 AKNESMFTDSSIETTKTTFQLQQKYIVSTLKSGMLVIDQNRAHQRILYESFLKHITIKEA 476

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
           TSQ LL P  +     E  +I     DL   G          I I  +P  + +  +  +
Sbjct: 477 TSQQLLFPLQLHFTPNETKIIDGLKLDLEHTGFVFSELNDKEITITGVPVGVPESEVSII 536

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L  +I ++ ++          + +  +MA   +I++G+ + S E   ++  +      + 
Sbjct: 537 LEQLISDV-ENEVPDANFSVADLLAKSMAKSLAIKNGQSLNSTEQEHMVNSLFACKEPNV 595

Query: 573 CNHGRPTFIKLKLSDIEKLFG 593
               RPTFI + + DIEK F 
Sbjct: 596 SPTNRPTFITMAVGDIEKKFM 616


>gi|57651866|ref|YP_186172.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161404|ref|YP_493886.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195006|ref|YP_499806.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221417|ref|YP_001332239.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509462|ref|YP_001575121.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142530|ref|ZP_03567023.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|258452595|ref|ZP_05700601.1| DNA mismatch repair protein mutL [Staphylococcus aureus A5948]
 gi|262048182|ref|ZP_06021069.1| DNA mismatch repair protein [Staphylococcus aureus D30]
 gi|262051356|ref|ZP_06023579.1| DNA mismatch repair protein [Staphylococcus aureus 930918-3]
 gi|282920540|ref|ZP_06328261.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9765]
 gi|294848292|ref|ZP_06789039.1| DNA mismatch repair protein mutL [Staphylococcus aureus A9754]
 gi|71151979|sp|Q5HGD5|MUTL_STAAC RecName: Full=DNA mismatch repair protein mutL
 gi|109940102|sp|Q93T05|MUTL_STAA8 RecName: Full=DNA mismatch repair protein mutL
 gi|123486128|sp|Q2FHE2|MUTL_STAA3 RecName: Full=DNA mismatch repair protein mutL
 gi|172048871|sp|A6QGJ5|MUTL_STAAE RecName: Full=DNA mismatch repair protein mutL
 gi|189030418|sp|A8Z1W7|MUTL_STAAT RecName: Full=DNA mismatch repair protein mutL
 gi|57286052|gb|AAW38146.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127378|gb|ABD21892.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202564|gb|ABD30374.1| DNA mismatch repair protein HexB, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374217|dbj|BAF67477.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368271|gb|ABX29242.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|172087907|emb|CAQ35189.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087923|emb|CAQ35197.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087931|emb|CAQ35201.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|257859813|gb|EEV82655.1| DNA mismatch repair protein mutL [Staphylococcus aureus A5948]
 gi|259160731|gb|EEW45752.1| DNA mismatch repair protein [Staphylococcus aureus 930918-3]
 gi|259163748|gb|EEW48303.1| DNA mismatch repair protein [Staphylococcus aureus D30]
 gi|269940787|emb|CBI49169.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282594202|gb|EFB99189.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9765]
 gi|294825092|gb|EFG41514.1| DNA mismatch repair protein mutL [Staphylococcus aureus A9754]
 gi|302751118|gb|ADL65295.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|315198538|gb|EFU28867.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140886|gb|EFW32733.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143847|gb|EFW35619.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313966|gb|AEB88379.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 669

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 305/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F++EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMEENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDGTTVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|253733466|ref|ZP_04867631.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728520|gb|EES97249.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 669

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 303/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQDNAPKTH 354
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 355 LPKYAT------SLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                       S   +  K F++EN+              ++        D   S  N+
Sbjct: 359 RQSTENNQEKTFSSEESNSKPFMEENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTTVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|298694588|gb|ADI97810.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 669

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSPEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMLDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|310658533|ref|YP_003936254.1| DNA mismatch repair protein [Clostridium sticklandii DSM 519]
 gi|308825311|emb|CBH21349.1| DNA mismatch repair protein [Clostridium sticklandii]
          Length = 634

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/633 (29%), Positives = 318/633 (50%), Gaps = 46/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L +K I+ IAAGE++E P+  +KELIENS+DA+++ +   I  GGKS+ ++TD+GF
Sbjct: 6   QIKQLDDKTISLIAAGEVVESPASIVKELIENSIDAKATSIVLEIRDGGKSYIRVTDDGF 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++ +A +RH TSKI+   DF N++T GFRGEAL SI AVS +++ ++  +   G 
Sbjct: 66  GIDEADVELAFKRHTTSKITSFTDFCNLYTNGFRGEALASIAAVSRVSITTKTKEAFLGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I+G  I     V    GT + + DL +  PAR NFLKS Q ET+ I D++ R+A+  
Sbjct: 126 SLIITGGIIEKKEKVGAKDGTTIIIEDLLYNTPARKNFLKSNQAETSKINDIVERLALIN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTG 238
             V F +          +   T     E ++ +    +  +  EL  +  ++  ++G+ G
Sbjct: 186 NSVKFKYINNNKVMLTTSSNLTFS---ESMNNIYNNAYDKSIKELPIEYIDDYGIEGFLG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
             +    N    Y+F+N R V+ K I S +  AY++ I + R+P+ ++ L +DP  +DVN
Sbjct: 243 DNSIMSHNRKNQYIFVNKRVVKSKLITSVVEEAYSQFITINRFPIFLINLNVDPALIDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-------------------VLSK 339
           +HP K  ++F N   +++ +   I+  +++  +   S                    L  
Sbjct: 303 IHPNKLEVKFSNENKLKDILFNYIKSKLSESIMIPKSNLSSKYDKVKKDEPQNINFDLFI 362

Query: 340 KMISSFHQDNAPKTHLPKYA------------------TSLTNTQEKLFLQENRLSTNDL 381
              + F QD   K     Y                    +  N +  LF+ EN  +  DL
Sbjct: 363 NETNLFPQDAVKKPASNNYTLDSMPTNDKSHDLENFIINTKPNAENNLFINENPNNNYDL 422

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                   +  N     +   +Y+          +YII+Q  + L ++DQHAAHER+++E
Sbjct: 423 SSKPSSNKTNLNTTSNSNHQFNYKDLSVIGVFINSYIITQYNEALYVIDQHAAHERILYE 482

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           K    + + KI+SQ LL P  I++       I +  + L+  G  AE F   ++ IR IP
Sbjct: 483 KYLNSYKNDKISSQNLLIPISINISFDVSVYIHDIIDLLNDYGFNAEPFSQESLVIRAIP 542

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
            I ++     L  ++I+     S    L D ++  +A+ AC  +I++  K+  +E++++L
Sbjct: 543 NIFNQNEAINLANELINNF---SKQIYLSDELKEKIASKACKSAIKANDKLLRLEISQIL 599

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +++   N   C HGRP  I+L   ++EK+F R
Sbjct: 600 SDLDSCENKYSCPHGRPITIELSKYELEKMFKR 632


>gi|300771461|ref|ZP_07081336.1| DNA mismatch repair protein MutL [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300761450|gb|EFK58271.1| DNA mismatch repair protein MutL [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 628

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/627 (29%), Positives = 326/627 (51%), Gaps = 41/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+ A+KELIEN++DA + +++ ++   GKS  Q+ DNG G
Sbjct: 5   IQLLPDAVANQIAAGEVVQRPASAVKELIENAIDAGADKIKLIVKDAGKSMIQVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +  +RH TSKI   +D   I T GFRGEA+ SI A++H+ L +R  ++  G  
Sbjct: 65  MSVTDARLCFERHATSKIRKAEDLFAIRTMGFRGEAMASIAAIAHIELKTRRVEDELGTV 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P A++PGT + V++LFF IPAR NFLKS  VE   I D  +R+A+A+P
Sbjct: 125 IEIEGSKITDQHPEALSPGTSISVKNLFFNIPARRNFLKSNAVEMRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F+  +  +  Y +  ++      +RI  ++G ++    V + E+++ IT+ G+ G P
Sbjct: 185 EIFFSLHSDGNEVYHLPAET----LKQRIVHLLGNNYNQRLVPVEEETSIITINGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++D ++   +  AY E +    YP+ VL ++IDP ++D+NVH
Sbjct: 241 EFAKKTRGEQFFFVNKRFIKDPYLNHAVLNAYEEILAADSYPLYVLFIDIDPAKIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---------------- 344
           P K+ I++ +   I   +  +I++++ +  I+ +    ++   S                
Sbjct: 301 PTKTEIKYEDDKAIYAILRSAIKRSLGRYNIAPTLDFDQETGFSNMISQKPLDEIQAPTI 360

Query: 345 -FHQDNAPKTHLPKYATSLTNT-------QEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
            F+ D  P     K + S + +       ++K  + +N  +   +  S+  T ++     
Sbjct: 361 NFNPDFNPFEPGYKESASKSRSDNYTSGFEKKAGIPQNWDTLYQITESEATTSTQLPLLP 420

Query: 397 EESEATHY---------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            E E             Q      Q+H  +I+SQ   G +I+DQ AAHER++FE+ +   
Sbjct: 421 AEPEEEDIDINVPEVSVQQSKQFFQLHNRFIVSQIHSGFMIIDQQAAHERILFEQFQAHL 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS-K 506
              +  SQ  L P+ IDL   + AL+ E   ++  LG +   FG     +  IPA L   
Sbjct: 481 EQNQGISQQSLFPQTIDLNSADHALMEEILPEIQSLGFQLRPFGKTTYIVDGIPADLGSN 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            N   ++  ++++   + +   L  R EN+  ++A   +I+ G  + +  M  L+  +  
Sbjct: 541 VNEVAIIERLLEDFKHNKSELKLNKR-ENLARSLAKSAAIKPGTLLDNQAMAELIDRLFA 599

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFG 593
             + +   +G+P  I   +S++ + FG
Sbjct: 600 CESPNISLYGKPIIITFTMSELLEKFG 626


>gi|329121176|ref|ZP_08249804.1| DNA mismatch repair protein MutL [Dialister micraerophilus DSM
           19965]
 gi|327470258|gb|EGF15719.1| DNA mismatch repair protein MutL [Dialister micraerophilus DSM
           19965]
          Length = 622

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/624 (29%), Positives = 299/624 (47%), Gaps = 38/624 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L EK INQIAAGE++ERP  A+KE++ENS+DA +S +E  IA GG ++ ++TDNG G
Sbjct: 4   IHLLDEKTINQIAAGEVVERPVNAVKEMVENSIDANASEIEVEIADGGITYIRVTDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  M++ RH TSKIS  D+  +I + GFRGEAL SI AVS  TL +R   N+ G Q
Sbjct: 64  MDKEDAEMSIIRHATSKISTVDNIFHISSLGFRGEALASIAAVSKCTLTTRQKDNSEGVQ 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I   KI+  + V    GT +EVR+LF+ +PAR  FLK+E+ E   I  +I +MA+++P
Sbjct: 124 LDIESGKITDSKIVGAPVGTTIEVRELFYNVPARKKFLKTERTEAGRINTIIGKMALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F           +     NG   + ++ + G D  N    +   S    L G    P
Sbjct: 184 TIAFRLINNGR---VVIETPGNGRLLDAVTSLYGIDVSNEMFTVEHSSAMYFLDGMISKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  + +     + +N R V+   I   I  AY   +P   YPV ++ L + P  +D+NVH
Sbjct: 241 SLLKSSRQYQTIIVNHRIVESPLISKAIDNAYHSLLPKTGYPVCIIKLTVPPESIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI----NKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           P K  I+F N   I   +  ++ K +        I+T      K  S   +D   K    
Sbjct: 301 PQKREIKFENEKEIFRLVYHAVLKTLTAQSEATEIATEITYVPKHESVDEKDINTKKIEN 360

Query: 357 KYAT-----------------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
            Y +                 +  N  +    +E      +    +  + +   +  + +
Sbjct: 361 NYYSTKKGNDFVNLYWKDATDTYNNKTQDNHCEEKNEYNPENDLKNIYSENSILENFQNN 420

Query: 400 EATHYQLGIAC---------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
           E    +L              Q+   +II      L I+DQHAAHER+ ++K+    ++ 
Sbjct: 421 EKQSERLFEDIKKEELVIPLGQVANCFIICVKGKELFIIDQHAAHERVRYDKL--AEHAE 478

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            I  Q +L P +I + + +  L  E  +D+ RLGI  E+ G + I I   P   S+ ++ 
Sbjct: 479 SIPVQNILIPHLITMDKQDIELFEERRKDIERLGIIFEQAGIDVIRITGAPEDFSESDME 538

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +++ D++      S     +     ++A  AC G+I++G  +   +M  L+ ++      
Sbjct: 539 RVIHDLLIAFNSQSEPSP-ETLRHRMMAYAACRGAIKAGDVLNIRQMKELISDLFMTSRP 597

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C HGRPT IK    ++ KLF R
Sbjct: 598 FVCPHGRPTIIKFTPEELGKLFKR 621


>gi|258454754|ref|ZP_05702718.1| DNA mismatch repair protein mutL [Staphylococcus aureus A5937]
 gi|257863137|gb|EEV85901.1| DNA mismatch repair protein mutL [Staphylococcus aureus A5937]
          Length = 669

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 162/670 (24%), Positives = 298/670 (44%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +R      +   I+  IQ+A   + +   + L      +        +    + 
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLYSFEQQKIEFEQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSD------------------------DPTYSEDND 394
             +  N QEK F  E   S + +  +                         D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKSFMAENQNDEIVIKEDSYNPFVTKTSESLITDDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTD-------------------GLVIVDQHAA- 434
             E+ E    +      ++ Q +  ++                      G    D     
Sbjct: 419 TREKDEDYFKKQQKILQEMDQTFDSNEDASVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 435 -----------------HERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                            +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|14194230|gb|AAK56306.1|AF378369_2 DNA mismatch repair protein MutL [Staphylococcus aureus]
          Length = 669

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 305/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F++ENR              ++        D   S  ++
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMEENRNDEIVIKEDSYNPFVTKTSESLIADDESSGYDN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDGTTVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|304440468|ref|ZP_07400357.1| DNA mismatch repair protein MutL [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371220|gb|EFM24837.1| DNA mismatch repair protein MutL [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 630

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/637 (28%), Positives = 306/637 (48%), Gaps = 53/637 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E  +++IAAGEIIE P+  +KEL+ENS+DA +  +   +  G  ++ +++D+G G
Sbjct: 2   INILDEYTVSKIAAGEIIENPASIVKELLENSIDAGAKNITVEVKDGAANYLRVSDDGSG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++  A  RH TSK+  SDD  NIH+ GFRGEAL SI  VS LT +++   + T   
Sbjct: 62  IEKDDLKYAFLRHATSKLKTSDDLFNIHSLGFRGEALASISNVSKLTCITKTKSDLTATV 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +   +I S + +A N GT   +RD+F+  P R  +LKSE +E + I DV+ +++++  
Sbjct: 122 VEVENGEIKSEKNIASNEGTTFIIRDVFYNTPVRKKYLKSENLEFSYIFDVVEKLSLSRS 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SFT                N N    I  V+G D   N VE+  +     ++G+    
Sbjct: 182 EISFTLVRDGKVVVSSIA---NENLKNHIHSVLGSDITRNLVEIEHEEEGYKIKGFISNN 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R   N  Y+F+NGR V++  I   I  +Y   IPL R+PV +L +EIDP+ VDVN+H
Sbjct: 239 MLYRSTRNHEYLFVNGRFVKNLEIARAIEKSYKSLIPLNRFPVYLLYIEIDPKLVDVNIH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  I+  N   +   +   +++ + K          +K   S  ++     +      
Sbjct: 299 PKKHEIKLSNENRLIEILDMLVREKLYKNTSIFKVNFEEKEEKSIFEEFGSFDNNSFDNN 358

Query: 361 SLTNTQEKLFLQENRLSTN------------------DLLPSDDPTYSEDNDPVEESEAT 402
           S  N++E  +       TN                  D L  +D    +  D +  +   
Sbjct: 359 SNENSEEDTWFNRPTEKTNTSNEFIKVIDGIDFSHEYDSLEVEDEKREKCTDSLSNNITK 418

Query: 403 HYQLGIAC------------------------AQIHQNYIISQTTDG-LVIVDQHAAHER 437
           +  +                              + + Y+I ++ +    IVDQHAAHER
Sbjct: 419 YENISFNVADKSDEYLVEKPQILKDLLNSTYKGSLFKTYLIFESYEDKFYIVDQHAAHER 478

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           + +EK +++F    I  Q LL+P ++++   E  +++E+ E+L  LG   E FG  +  +
Sbjct: 479 INYEKFKREFEEKSIERQVLLSPLLVEVTSEERKVLLENTENLKNLGFYFEEFGEKSFLL 538

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           REIP I  K +    + +++ +  D+         +     T AC  S+++G  +   E+
Sbjct: 539 REIPIIFGKPSGLGFIHELLSDSYDNLYKVDPYKIM-----TKACKASVKAGDSLSIEEI 593

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             L++ +    N   C HGRPT ++LK  D+E+LF R
Sbjct: 594 KELIKLLSNCDNPLTCPHGRPTILELKKYDLERLFLR 630


>gi|15924287|ref|NP_371821.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926879|ref|NP_374412.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|150393845|ref|YP_001316520.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156979617|ref|YP_001441876.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006083|ref|ZP_05144684.2| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795648|ref|ZP_05644627.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9781]
 gi|258416051|ref|ZP_05682319.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9763]
 gi|258421634|ref|ZP_05684558.1| DNA mismatch repair protein mutL [Staphylococcus aureus A9719]
 gi|258434790|ref|ZP_05688864.1| DNA mismatch repair protein mutL [Staphylococcus aureus A9299]
 gi|258444634|ref|ZP_05692963.1| DNA mismatch repair protein mutL [Staphylococcus aureus A8115]
 gi|258447533|ref|ZP_05695677.1| DNA mismatch repair protein mutL [Staphylococcus aureus A6300]
 gi|258449375|ref|ZP_05697478.1| DNA mismatch repair protein mutL [Staphylococcus aureus A6224]
 gi|269202913|ref|YP_003282182.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892784|ref|ZP_06301019.1| DNA mismatch repair protein mutL [Staphylococcus aureus A8117]
 gi|282927638|ref|ZP_06335254.1| DNA mismatch repair protein MutL [Staphylococcus aureus A10102]
 gi|295406233|ref|ZP_06816040.1| DNA mismatch repair protein MutL [Staphylococcus aureus A8819]
 gi|296274854|ref|ZP_06857361.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244461|ref|ZP_06928344.1| DNA mismatch repair protein mutL [Staphylococcus aureus A8796]
 gi|54037875|sp|P65492|MUTL_STAAN RecName: Full=DNA mismatch repair protein mutL
 gi|54041516|sp|P65491|MUTL_STAAM RecName: Full=DNA mismatch repair protein mutL
 gi|166232110|sp|A7X1T8|MUTL_STAA1 RecName: Full=DNA mismatch repair protein mutL
 gi|189030417|sp|A6U1B5|MUTL_STAA2 RecName: Full=DNA mismatch repair protein mutL
 gi|13701096|dbj|BAB42391.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247067|dbj|BAB57459.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|149946297|gb|ABR52233.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721752|dbj|BAF78169.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|172087905|emb|CAQ35188.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087911|emb|CAQ35191.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087915|emb|CAQ35193.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087919|emb|CAQ35195.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087921|emb|CAQ35196.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|257789620|gb|EEV27960.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9781]
 gi|257839199|gb|EEV63675.1| DNA mismatch repair protein MutL [Staphylococcus aureus A9763]
 gi|257842320|gb|EEV66745.1| DNA mismatch repair protein mutL [Staphylococcus aureus A9719]
 gi|257849151|gb|EEV73133.1| DNA mismatch repair protein mutL [Staphylococcus aureus A9299]
 gi|257850127|gb|EEV74080.1| DNA mismatch repair protein mutL [Staphylococcus aureus A8115]
 gi|257853724|gb|EEV76683.1| DNA mismatch repair protein mutL [Staphylococcus aureus A6300]
 gi|257857363|gb|EEV80261.1| DNA mismatch repair protein mutL [Staphylococcus aureus A6224]
 gi|262075203|gb|ACY11176.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590641|gb|EFB95718.1| DNA mismatch repair protein MutL [Staphylococcus aureus A10102]
 gi|282764781|gb|EFC04906.1| DNA mismatch repair protein mutL [Staphylococcus aureus A8117]
 gi|285816978|gb|ADC37465.1| DNA mismatch repair protein MutL [Staphylococcus aureus 04-02981]
 gi|294968821|gb|EFG44843.1| DNA mismatch repair protein MutL [Staphylococcus aureus A8819]
 gi|297178491|gb|EFH37737.1| DNA mismatch repair protein mutL [Staphylococcus aureus A8796]
 gi|315131090|gb|EFT87074.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727180|gb|EGG63636.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 669

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 162/670 (24%), Positives = 298/670 (44%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +R      +   I+  IQ+A   + +   + L      +        +    + 
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLYSFEQQKIEFEQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSD------------------------DPTYSEDND 394
             +  N QEK F  E   S + +  +                         D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKSFMAENQNDEIVIKEDSYNPFVTKTSESLITDDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTD-------------------GLVIVDQHAA- 434
             E+ E    +      ++ Q +  ++                      G    D     
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNEDASVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 435 -----------------HERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                            +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|283470512|emb|CAQ49723.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 669

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|321272299|gb|ADW80184.1| MutL [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage
           WOVitA1]
 gi|321272351|gb|ADW80232.1| MutL [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage
           WOVitB]
          Length = 598

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 224/610 (36%), Positives = 344/610 (56%), Gaps = 29/610 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG++   +TD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSSEIEIKIESGGRNLITVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  +++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+        
Sbjct: 61  NGIEKDDLELAFMRHATSKLSDSELIEIKHLGFRGEALPSIAAVSRMKLSSKASGAKEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I    GEKI  + P ++  GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SIRYEGGEKIREITPCSLLQGTYIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K   Q++  N    I +    +F +N++E+ E+   I L+G+  
Sbjct: 181 NYSIGFTLTSGNKKLLKYVKQTSLFNRLCEIEE----EFQSNSLEVKEEEEGIKLKGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  NRGN+ Q Y F+NGR ++D  ++  IR AY + IP  RYP  VL LEI   QVDVN
Sbjct: 237 KPNVNRGNSTQIYTFVNGRPIKDNLLVGAIRYAYHDFIPNNRYPFAVLHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-----SSFHQDNAPKT 353
           VHP KS +RF+N  +I   + + I K ++ +  +    + +++I     S    D+  K 
Sbjct: 297 VHPNKSEVRFQNKRLIYEIVRRGIIKTLSTRFAAGDQGIEEELIFNDSKSQEQVDSQEKK 356

Query: 354 HLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSEDNDPVEESEAT---HY 404
              ++     +  E   ++      E R S  +     +    +    +E  +      +
Sbjct: 357 DQKEFYEKRPSLLENRLMKEFNAPDERRQSLPETFKYGESPPQKGTMVLERKQIDLVEDH 416

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A  Q+H  YII+++ D L+IVDQHAA+ERLI+E ++     + I  Q LL   +  
Sbjct: 417 PLGYARCQVHNTYIIAESGDRLIIVDQHAAYERLIYECLK---QKSSIKRQKLLPETVEI 473

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             +    ++  + ++L  +G   E    + + I+EIPAIL   +I ++L DI+D++++  
Sbjct: 474 KNQAGMGMVKTYKDELFEMGFDIEIQSEDKVTIKEIPAILGTIDIKEMLVDIVDKLMEME 533

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            T  ++D++  I AT+AC+G+   GRKM+  EMN +LR++EK P S    H RPT+I++K
Sbjct: 534 DTLPIEDKVNKISATIACHGA---GRKMKLEEMNEILRQIEKTPYSG---HERPTYIEMK 587

Query: 585 LSDIEKLFGR 594
           LSDIEKLF R
Sbjct: 588 LSDIEKLFER 597


>gi|282903851|ref|ZP_06311739.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus C160]
 gi|282595469|gb|EFC00433.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus C160]
          Length = 669

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENKQERTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEIQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|86158140|ref|YP_464925.1| DNA mismatch repair protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123764022|sp|Q2IIL0|MUTL_ANADE RecName: Full=DNA mismatch repair protein mutL
 gi|85774651|gb|ABC81488.1| DNA mismatch repair protein MutL [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 608

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 174/608 (28%), Positives = 300/608 (49%), Gaps = 18/608 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   ++NQIAAGE++ERP+  +KEL+EN+LDA ++ +   +  GG +  ++ D+G 
Sbjct: 3   RIHVLPPGLVNQIAAGEVVERPASIVKELVENALDAGATAIGVDVEEGGLALVRVADDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A++RH TSK+ D    + I T GFRGEA+P+I +VS   L + P ++  G 
Sbjct: 63  GMDRDDALLALERHATSKLRDAEGLAAIGTMGFRGEAVPAIASVSRFRLDTSPGEDGAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G  +  V PVA   GT VEVRDLFF  PAR  F+++   E   +++ + R+A+A 
Sbjct: 123 RVEIEGGVLGEVAPVARPRGTTVEVRDLFFNTPARRKFMRAASTEAGHVSEAVIRLALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT  +              G   +R  Q +G +   + + ++ +  E+ + G    
Sbjct: 183 PDVGFTLRSGGRLVLGARAG---GGLADRAGQALGREAHRHLLPVDARRGEVRVHGLICS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +       Y+F+NGR V+D+     +  A+A T+P GR+P  VL +E+   +VDVNV
Sbjct: 240 PDHSEATGRALYLFVNGRYVRDRAAAHAVLRAFAGTLPPGRHPAGVLFVELPLDRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH------------Q 347
           HP K  +RF     + + +  ++  A+       +   +                    +
Sbjct: 300 HPQKLEVRFAEGREVFDALFHTVAGALRTAPWLRARPQAAPAGEGPPAGGEAVAVPLAGE 359

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           D A      + A     +   L            L        +           ++   
Sbjct: 360 DAAAVLAWARAARPPEGSGATLVQPAPGAWATGRLAFPIAPAPDAGPEAAPRPEGYFAGL 419

Query: 408 IACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
               Q  + Y++ +   G LV++DQHA+HER++F ++++ F + +I  Q  L P+++ L 
Sbjct: 420 RYVGQHARTYLLCEAPGGTLVVIDQHASHERMLFHRLKEAFRARRIPVQPYLLPQVVTLP 479

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
                 +     +L RLG  AE FG +A A++  PA L+  ++  LL D+  ++ D    
Sbjct: 480 PAAARALEAGLAELGRLGFDAEPFGGDAFAVKGAPAALAGVDLTALLTDLGSQLADVERG 539

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             + D   ++LATMAC+ ++R+ + +   E   LL  ++     ++C HGRP   +L L+
Sbjct: 540 SAVDDAFHDLLATMACHAAVRANQDVSPEEARALLDGLDAIDFKARCPHGRPVVFELSLA 599

Query: 587 DIEKLFGR 594
           D+E+  GR
Sbjct: 600 DLERRVGR 607


>gi|51892886|ref|YP_075577.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM
           14863]
 gi|81826108|sp|Q67NL0|MUTL_SYMTH RecName: Full=DNA mismatch repair protein mutL
 gi|51856575|dbj|BAD40733.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 635

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/645 (28%), Positives = 303/645 (46%), Gaps = 64/645 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E+  NQIAAGE++ERP+  +KEL+EN+LDA++ R+   ++GGG+   ++TD+G 
Sbjct: 3   RIRLLDERTANQIAAGEVVERPASVVKELVENALDAQAKRIVVEVSGGGRELVRVTDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A+QRH TSKI   +D + I T GFRGEALPSI AVS   L++RP     G 
Sbjct: 63  GMVPEDARLALQRHATSKIRTAEDLNAITTLGFRGEALPSIAAVSQFELITRPHDQLAGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G +I +        GT V VRDLFF +PARL +LK+   E   I D++ R+A+A 
Sbjct: 123 RILAEGGQIVAEGEHGCPAGTRVTVRDLFFNVPARLKYLKTNATELAQIGDILTRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F F    S + ++      G+    ++ ++G +     + ++ +++   + G+ G 
Sbjct: 183 PEVAFRFQ---SGQAQVFATPGTGDLTAAVAALLGREMAKELLPVDYRNDAARVHGFVGR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R   +  Y F+N R V+       +  AYA  +P GRYPV +L +E++P +VDVNV
Sbjct: 240 PTIARAGRSHQYFFVNRRAVRTIAARYALEEAYAHLLPNGRYPVCILFIEVEPHEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL---- 355
           HP K+ +RF+    +R  + Q+ + A+    +   + ++             K  L    
Sbjct: 300 HPTKAEVRFQRDREVRAAVYQAARHALGAALLIPGTEVTADGEVRVPDRAEEKAALQRGW 359

Query: 356 -----------------PKYATSLTNTQEKLFLQENRLST-----------------NDL 381
                            P +  S      +   +E   +                     
Sbjct: 360 VPPGAGRPGEGGGRAAPPPWRVSAGGPGGQTTAREPVQAYLPAGGLQAALAQRAAEEAAA 419

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                        P         +      Q+H++YI     +GL ++DQHAAHER+ FE
Sbjct: 420 AVPAVDLAEATLVPRSAEPGELIRALRPLGQVHRSYIACDGPEGLYLIDQHAAHERIFFE 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           ++           Q LL P  +DL   + A+  E+       G +AE FG N + I  +P
Sbjct: 480 RLYAAAQEQATAVQRLLFPLTLDLTPAQMAIWQENAAIFAESGFEAEPFGGNTLLIHGVP 539

Query: 502 AILSKKNIPQLLRDIIDEIIDS--STTYTLQDRIENIL----------ATMACYGSIRSG 549
           A L   ++ +L+ D +D + +   +    + DR   +L                      
Sbjct: 540 AGLGTDHVARLVCDFLDRLQEDQVAPGTPVTDRRRRVLAAMAACKAAIKAR--------- 590

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +Q  ++  LL ++    +   C HGRPT I + +S++EK F R
Sbjct: 591 DPLQPEDIAALLSDLAACASPETCPHGRPTVICVSISELEKRFKR 635


>gi|160914742|ref|ZP_02076956.1| hypothetical protein EUBDOL_00749 [Eubacterium dolichum DSM 3991]
 gi|158433282|gb|EDP11571.1| hypothetical protein EUBDOL_00749 [Eubacterium dolichum DSM 3991]
          Length = 659

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/662 (30%), Positives = 311/662 (46%), Gaps = 75/662 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + N IAAGE++ERPS  +KEL+ENS+DA++  +E  I  GG     I D+G 
Sbjct: 3   RIHQLDEHLSNMIAAGEVVERPSGIVKELVENSIDAKAKHIEIQILQGGIDCITIIDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +++  +A +RH TSKI   DD   I T GFRGEALPSI +VS +TL  R       +
Sbjct: 63  GMDAQDATLAFERHATSKIQAVDDLWKISTMGFRGEALPSIASVSQVTL--RTNDGIDSS 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I    + S RP     GT++EVR+LF   PAR   LKS Q E +LI+DV+++ AI++
Sbjct: 121 EVIIYYGTLKSARPCGTPKGTMLEVRNLFQKTPARFKHLKSPQYEFSLISDVVQKFAISH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F  S    + +K      NGN  E + Q+ G D    A+EL+ +  + T++GY   
Sbjct: 181 PNIGFELSHDGRSVFKTK---GNGNLREVLMQIYGRDGAKTAIELHGQDLDYTIRGYALQ 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R       ++INGR +++  +   +  AYA  +P  RYP+ V+ +E+D + VDVNV
Sbjct: 238 PQFQRATKYYVLLYINGRMIRNYHLQKAVMDAYAPYMPKDRYPIAVINMEMDAQLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------------- 340
           HP+K  IR      +   + Q+I+ A+ +     +    K+                   
Sbjct: 298 HPSKWEIRLSKEKQLEKLLYQTIKAALMQDMEVPNIQARKENKKEKIEIQELQFTYPRDQ 357

Query: 341 ---------MISSFHQDNAPK---THLPKYATSLTNTQEKLFLQENRLSTN--------- 379
                      S  H +  PK   T   K        QE     E + S +         
Sbjct: 358 EVKKLHTEVNDSFVHYNGKPKQTITEESKVQVDKVEPQEAPVEAEKQESVDKKQELSESQ 417

Query: 380 ---------------------------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
                                      D++P  +     + +P  ES            Q
Sbjct: 418 SSDTQAPIKDQVIEEVSTTKQAETLFKDIVPIQEVVMKAEQEPASESINPSLPQLHVIGQ 477

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
            H +YI+++   GL I+DQHAA ER  +E +++   S    +Q LL P  ++      + 
Sbjct: 478 FHNSYILAEGEKGLYIIDQHAAQERYHYEMIQKQILSGVKDTQPLLIPITVETTISAVSR 537

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           I + +  L ++GI  E FG   +  RE+P  L        L+D+ID +       +L   
Sbjct: 538 IDDLNALLEQVGIHFEVFGNTTLLCRELPIWLKDTKEEAFLQDMID-LWQKDDEISLDKL 596

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            ++ +ATMAC+ SIR  R +   EM +++ ++ K      C HGRPT I  +  D+   F
Sbjct: 597 RKHTIATMACHSSIRFHRSLTMEEMKQVILDLGKCEQPFHCPHGRPTLICYEDKDLIHDF 656

Query: 593 GR 594
            R
Sbjct: 657 ER 658


>gi|169830745|ref|YP_001716727.1| DNA mismatch repair protein MutL [Candidatus Desulforudis
           audaxviator MP104C]
 gi|238688222|sp|B1I293|MUTL_DESAP RecName: Full=DNA mismatch repair protein mutL
 gi|169637589|gb|ACA59095.1| DNA mismatch repair protein MutL [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 565

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 174/595 (29%), Positives = 290/595 (48%), Gaps = 35/595 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L    +++IAAGE++ERP+  +KEL+EN+LDA +  V   IA GG     +TD+G 
Sbjct: 3   RIRVLDADTVSRIAAGEVVERPAAVVKELVENALDAGARVVHIDIAAGGLERITVTDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A+QRH TSKI  ++D   + T GFRGEALPSI AVS LTL +RP  ++ G 
Sbjct: 63  GMEPGDAELALQRHATSKITAAEDLEAVRTLGFRGEALPSIAAVSRLTLRTRPAASSAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +   G  + S       PGT+V VRDLFF  PAR  F++S   E  +I++++ R+A++ 
Sbjct: 123 VLETEGGLVLSAGVSGGPPGTVVTVRDLFFNTPARKKFVRSAAHEGAMISEMVGRLALSR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F  +       ++   S +G+  + I  V G       V +  +   + + GY G 
Sbjct: 183 PEVAFRLTVNGR---QVLATSGSGDLLDAIGAVFGAAVAREMVPVRFEERGLGVSGYVGR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +      F+NGR ++  ++ +    +    +P GR+ V+VL L ++P  VDVNV
Sbjct: 240 PGVSRSSRRHQVFFVNGRYIRSAYLGAAAEESLHGAMPAGRHAVLVLHLSVEPGMVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RF  P  +   + +++++A++++           + S+          +P   
Sbjct: 300 HPAKHEVRFSQPRDVYVVVHRAVREALHREIQIP-VEECGHLESACFPGAGTGFRIPVQV 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           T      E                             E +    +        +   YI+
Sbjct: 359 TFQGGEPE--------------------------LREESTGYQGFPQLQPLGFLPPAYIL 392

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +   DGL I+DQHAAHER++FE+  +    +    + LL P ++++   E   + ++   
Sbjct: 393 AGGADGLYILDQHAAHERVLFEQYLRTLEQS--AGKQLLVPVMVEIRGREAQTLEDYGPF 450

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L + G + + FG  A  IR +P+ L       LL D++D +               + A 
Sbjct: 451 LRQAGFEVDPFGEGAYLIRTVPSFLRPGAEAVLLTDVLDRLAGERPVDA-DAFRRVVAAV 509

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC+ ++R G K    E   LL ++ +      C HGRPT I++   ++ + F R
Sbjct: 510 LACHRAVRGGDKPAGPEAAALLTDLGRCAEPYLCPHGRPTLIRIGFPELARRFQR 564


>gi|282908590|ref|ZP_06316420.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283958039|ref|ZP_06375490.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|282327652|gb|EFB57935.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283790188|gb|EFC29005.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 669

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/670 (24%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E++P  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMNPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENKQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEIQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|49483459|ref|YP_040683.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425350|ref|ZP_05601775.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428011|ref|ZP_05604409.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430644|ref|ZP_05607026.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433404|ref|ZP_05609762.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436246|ref|ZP_05612293.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus M876]
 gi|282905614|ref|ZP_06313469.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282910868|ref|ZP_06318671.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914073|ref|ZP_06321860.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918995|ref|ZP_06326730.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924118|ref|ZP_06331794.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501105|ref|ZP_06666956.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510067|ref|ZP_06668775.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526653|ref|ZP_06671338.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427783|ref|ZP_06820415.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591259|ref|ZP_06949897.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus MN8]
 gi|56749233|sp|Q6GHD9|MUTL_STAAR RecName: Full=DNA mismatch repair protein mutL
 gi|49241588|emb|CAG40274.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|172087909|emb|CAQ35190.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|172087913|emb|CAQ35192.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|257271807|gb|EEV03945.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274852|gb|EEV06339.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278772|gb|EEV09391.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281497|gb|EEV11634.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284528|gb|EEV14648.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314090|gb|EFB44482.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316805|gb|EFB47179.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322141|gb|EFB52465.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325473|gb|EFB55782.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282330906|gb|EFB60420.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|290920725|gb|EFD97788.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096110|gb|EFE26371.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467011|gb|EFF09529.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128141|gb|EFG57775.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576145|gb|EFH94861.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus MN8]
 gi|315194183|gb|EFU24576.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 669

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENKQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEIQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|223938074|ref|ZP_03629972.1| DNA mismatch repair protein MutL [bacterium Ellin514]
 gi|223893288|gb|EEF59751.1| DNA mismatch repair protein MutL [bacterium Ellin514]
          Length = 667

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/663 (26%), Positives = 301/663 (45%), Gaps = 70/663 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS+++ NQIAAGE++ERP+  +KEL+EN+LDA +SRV   I  GG+S  ++TD+G 
Sbjct: 3   RIRLLSDQVANQIAAGEVVERPASVVKELVENALDAGASRVTVEIQAGGRSLVRVTDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ--NNT 117
           GM+ ++  + ++RH TSKI  ++D + I T GFRGEALPSI +VS  TL +R     +  
Sbjct: 63  GMSRDDALLCLERHATSKIQRAEDLAAIATMGFRGEALPSIASVSRFTLTTRERDGGSPE 122

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G QI + G KI  V+      GT VEVR +FF +PAR  FL+SE+ E+  I   +   A+
Sbjct: 123 GTQIVVVGGKIMEVKAAGSATGTSVEVRQIFFNLPARRKFLRSEETESAHIQHYLTLAAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN-------FPERISQVIGEDFINNAVELNEK--- 227
           AYP+V+FTFS      ++    +   +         ER+  + G +     V+ + +   
Sbjct: 183 AYPEVAFTFSKDARLIWQWPAVNAGKDAASRINGLRERMRAIHGSEQKLLPVDFSVELAE 242

Query: 228 ------------------SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
                              N   + G  G P  +R       +F+N R V+++ +   + 
Sbjct: 243 PVEVDENDLAVSMLREQPKNTFRVWGLMGAPGVSRSTREDQNLFVNRRPVENRGLNFALI 302

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y   +  GR+PV  L LEI+P  VDVN+HP+K  ++F     +R  + Q++++ + K 
Sbjct: 303 EGYHTALMKGRFPVCCLFLEINPAAVDVNIHPSKREVKFHQEMQVRRLVTQAVRQTLLKF 362

Query: 330 G-------------------------------------ISTSSVLSKKMISSFHQDNAPK 352
                                                   T  +L +  + +        
Sbjct: 363 HTTGNDGAPARGVEHSSELTRSVGVAAPAAAIAKAPEMPRTEELLQRSNLVAPASAGGVA 422

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
              P +         +  +  +       L       S  +                   
Sbjct: 423 NKAPLWEARTPIEPARPVMPASSQLPIASLAVQPSATSVASQLSAGPVPLLNVPLRVVGV 482

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI-TSQTLLTPEIIDLLEGECA 471
           + + Y++ ++  GLV++DQHAAHER++FE+M           SQ LL PE ++L   +  
Sbjct: 483 VGRLYVVLESDRGLVLLDQHAAHERILFEQMLNRLEGQGSAASQKLLLPETVELSVRDAQ 542

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            +     +L RLG+    FG     +  +P  +   +  + + +++DE+  +        
Sbjct: 543 FLRGQLAELTRLGVGLSEFGERTFLLDALPPFVRASDPRRFVLELVDELKSAGEEVNSLR 602

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
             E+ +A   C  ++++   +   E+  L+ ++        C HGRPT I++   ++EK 
Sbjct: 603 LGEHTIAKTVCRHAVKANDPLGGPELENLVNDLRHCAMPYTCPHGRPTLIEMNYRELEKK 662

Query: 592 FGR 594
           FGR
Sbjct: 663 FGR 665


>gi|323443947|gb|EGB01558.1| DNA mismatch repair protein [Staphylococcus aureus O46]
          Length = 669

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 305/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISVEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PEIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|282916556|ref|ZP_06324314.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770360|ref|ZP_06343252.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319043|gb|EFB49395.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460507|gb|EFC07597.1| DNA mismatch repair protein mutL [Staphylococcus aureus subsp.
           aureus H19]
          Length = 669

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/670 (24%), Positives = 304/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  + F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSRPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|57234054|ref|YP_181908.1| MutL/HexB family DNA mismatch repair protein [Dehalococcoides
           ethenogenes 195]
 gi|57224502|gb|AAW39559.1| DNA mismatch repair protein, MutL/HexB family [Dehalococcoides
           ethenogenes 195]
          Length = 566

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 182/599 (30%), Positives = 319/599 (53%), Gaps = 39/599 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  I +IAAGE+IERPS  +KEL+ENSLDA + RV+ VI  GG  + +++D+G
Sbjct: 1   MPIKLLDKATIARIAAGEVIERPSSVVKELLENSLDAGAKRVDVVIREGGIGYIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A +RH TSK+S  +D   I + GFRGEALPSI AV+ L +++      +G
Sbjct: 61  CGIVFSEVLLAFERHATSKLSSFEDIYAISSLGFRGEALPSIAAVADLEMLTAARTEESG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +++SG ++     +A +PGT +++  LF  +PARL FLK+ Q E + +++V+   A+A
Sbjct: 121 TYLSLSGGEMVKHTRMARSPGTTIKLTRLFSRVPARLKFLKTPQHEASKVSEVVLSYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE---ITLQG 235
           YP+V FT S    N         NG   + + ++ G D  +  ++L   S     I + G
Sbjct: 181 YPEVKFTLSIDGRNTLN---TPGNGKLRDAVLEIYGNDVASKMLDLETDSYRSSAINISG 237

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P  +R N N  + F+N R +Q + +      AY+  + +GRYP+ V+ + +D   V
Sbjct: 238 LVSPPEISRSNRNSLHFFVNRRLIQSRALQKAAEQAYSGLLMVGRYPLGVINIWLDGALV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HP K+ ++F + + +   + ++++  + +K     +    +  S + Q++A +  +
Sbjct: 298 DVNIHPTKAEVKFSDESAVFTAVQRAVRSVLVEK---PPTPHIAEEASVYRQESARQEPI 354

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                    T ++ F                      +  ++ ++ +   L     QI  
Sbjct: 355 WGETPKPAGTVQQYF----------------------SPVIQSAKTSVLPLLRLVGQIGG 392

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y++++  DGL I+DQHAAHER+ +E++     S +   Q+LL P I++L   + A+I +
Sbjct: 393 LYLLAEGPDGLYIIDQHAAHERIRYEEIASQTPS-ENARQSLLDPFILELNPVQEAMIEK 451

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              +L  +G + E FG     ++ IPA  +      LL +++D   D+     +++R++ 
Sbjct: 452 CKSELDLMGFEIEEFGRRVYRVQSIPAGFTAPQAKALLSELVDNPKDAPAE--IKERLQR 509

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   MAC+ ++R+G+ +   EM  LL ++EK      C HGRPT +K+    +EK F R
Sbjct: 510 L---MACHTAVRAGQVLNEAEMRELLLKLEKTAVPGHCPHGRPTIVKIDFCQLEKDFKR 565


>gi|323441078|gb|EGA98785.1| DNA mismatch repair protein [Staphylococcus aureus O11]
          Length = 669

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/670 (24%), Positives = 305/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISVEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PEIRIALISDGKTILSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|150390306|ref|YP_001320355.1| DNA mismatch repair protein MutL [Alkaliphilus metalliredigens
           QYMF]
 gi|167017335|sp|A6TR78|MUTL_ALKMQ RecName: Full=DNA mismatch repair protein mutL
 gi|149950168|gb|ABR48696.1| DNA mismatch repair protein MutL [Alkaliphilus metalliredigens
           QYMF]
          Length = 637

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/644 (28%), Positives = 309/644 (47%), Gaps = 59/644 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L    IN+IAAGE++E P   +KELIEN++DA  + +   I  GGK + ++TDN
Sbjct: 1   MPQIKLLDNLTINKIAAGEVVEGPYSIVKELIENAIDAGGTAITLEIKEGGKKYIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G++S+++  A  RH TSKIS   D S   + GFRGEAL SI AVS + ++++P   + 
Sbjct: 61  GIGISSDDVNRAFMRHSTSKISSLQDLSTTFSLGFRGEALASISAVSQVEMITKPKDQSY 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G    I G +I++ + V    GT + ++++FF  P R  F+KS Q ET  I+++I R+A+
Sbjct: 121 GILTEIEGGEITNQKKVGCPTGTTMIIKNVFFNTPPRYKFMKSTQAETARISEMISRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P ++F +      +  +     +G     I  V  ++F  N + L+     + L G+ 
Sbjct: 181 SSPHIAFKYINN---QTTIFTTPGDGTLSSVILSVFEKNFFQNLIPLSVNKPALELDGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               F RGN +    ++NGR ++ K I   I  AY   IP+ +YP+ VL ++IDP   D+
Sbjct: 238 SQVDFVRGNRSFQIFYVNGRYIKSKLISQAIEEAYKGKIPINKYPICVLNIKIDPEDADI 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP+K+ I+F     I ++I   + + +++    +S++    MI S    +    HL +
Sbjct: 298 NVHPSKTEIKFHKEKEIYHYIYNYVTQVLSE----SSTISEIMMIPSTKNQHQQHHHLKE 353

Query: 358 YATSLTNTQEK-------------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
              S  N Q K                QE     N     D     +    V   +    
Sbjct: 354 INLSQENIQSKESIGVKQQDKVMVADEQEKVKEYNSQYVMDSRPKVQPPPMVNTLKTEDT 413

Query: 405 Q----------------------------------LGIACAQIHQNYIISQTTDGLVIVD 430
           Q                                        Q+   YI+ +    + ++D
Sbjct: 414 QLNVASIISNELPVESRGIRTNPQLQKNFIKTYLQNYKVVGQLFNTYIVIEKDQSVYLID 473

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+L++ +  ++     + SQ LLTP +++    +   ++E+  +   LG + E F
Sbjct: 474 QHAAHEKLLYIQFHEELKKETVASQQLLTPVVLEFSHEDYITLIENISEFIPLGFELEAF 533

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G N+I IR +P +L K      + ++ID++ +    +   D I   +   +C  +I++  
Sbjct: 534 GQNSIIIRAVPLLLDKPKDYNFIFELIDQVKNEK--HVKPDYIREKIIQRSCKEAIKAMD 591

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   E+ +L+R++EK      C HGRP  + L  + IEKLF R
Sbjct: 592 ILDIQEIQQLIRDLEKLEPPLTCPHGRPILLTLTKNQIEKLFKR 635


>gi|332520997|ref|ZP_08397457.1| DNA mismatch repair protein MutL [Lacinutrix algicola 5H-3-7-4]
 gi|332043527|gb|EGI79723.1| DNA mismatch repair protein MutL [Lacinutrix algicola 5H-3-7-4]
          Length = 620

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 152/620 (24%), Positives = 294/620 (47%), Gaps = 35/620 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA ++ ++ ++   GK+  Q+ DNG G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGATHIKLILKDAGKTLIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  +DD   ++T GFRGEAL SI A++H+ L ++  Q+  G  
Sbjct: 65  MSVTDARLSFERHATSKIKSADDLFQLNTKGFRGEALASIAAIAHVELKTKQEQDEVGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++ S   V    GT + V++LFF IPAR NFLKS  VET  I D   R+A+A+P
Sbjct: 125 IVIEGSEVQSQDVVVTPKGTSLSVKNLFFNIPARRNFLKSNPVETRHIIDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F      S  + +       N+ +RI  + G       V + E +  + + G+ G P
Sbjct: 185 SIGFVMYHNGSEVFNLPV----SNYRQRIVNIFGAKTNEKLVPVEEDTEVLKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++  ++   I +A+   +  G +    L L ++P+ +D+N+H
Sbjct: 241 EFAKKTRGEQFFFVNDRFIKSAYLNHAIGSAFDGLLKDGAHASYFLNLTVNPQTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM----ISSFHQDNAPKTHLP 356
           P K+ I+F +   +   +  +++ ++ +  I+      +        S+ Q   P   + 
Sbjct: 301 PTKTEIKFDDEHTLYAILRSAVKHSLGQFNIAPVLDFERDANLDTPYSYQQKGTPSVTVD 360

Query: 357 K------------------------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                                    +  +     E L++       N      +  +  +
Sbjct: 361 SNFNPFAEEKTVSNTSSTVSSSNTSFKKTPAANWENLYVGLESKGNNIQQDFSEVHFESE 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                  E    +   +  Q H  Y++S    GL+++DQ+ AH+R+++E   +     + 
Sbjct: 421 QQNASIFEDKKIEQKQSTYQFHNKYVVSTIKSGLLLIDQNRAHQRVLYEDFLKHITVKEG 480

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            SQ LL P  +     E  +I +   DL   G   ++     + I  +P ++ +  +  +
Sbjct: 481 MSQQLLFPLELHFSPQEIEIIKQLQSDLEHTGFVFQKIEKEHVEITGVPVMVPESEVSII 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L  +I ++ ++    +     + +  +MA   +I++G+ + ++E   L+  +      S 
Sbjct: 541 LEQLISDV-ENEVPDSNFSATDLLAKSMAKSLAIKTGQSLTAVEQEHLVNSLFACKAPSV 599

Query: 573 CNHGRPTFIKLKLSDIEKLF 592
               R TF+ + + +++K F
Sbjct: 600 SPTNRTTFVTMTVDELDKKF 619


>gi|325300053|ref|YP_004259970.1| DNA mismatch repair protein mutL [Bacteroides salanitronis DSM
           18170]
 gi|324319606|gb|ADY37497.1| DNA mismatch repair protein mutL [Bacteroides salanitronis DSM
           18170]
          Length = 619

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/621 (26%), Positives = 287/621 (46%), Gaps = 37/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  +KEL+EN++DA + +++ ++   GK+  Q+ D+G G
Sbjct: 5   IRLLPDSVANQIAAGEVIQRPASVVKELVENAVDAGAHQIDVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI +  D   +HT GFRGEAL SI AV+ + L +       G +
Sbjct: 65  MSETDARLAFERHATSKIREASDLFALHTMGFRGEALASIAAVAQVELRTCQEGEALGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+     VA   G+   V++LF+ +PAR  FLKS Q E + I     R+A+  P
Sbjct: 125 LLIAGSKVEEQEAVACPCGSNFSVKNLFYNVPARRKFLKSNQTELSNILAEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SFT     +    +          +RI  V G+      + ++  ++ I + G+ G P
Sbjct: 185 DISFTLYHNGTEMLNLPAI----QLRQRIMGVFGKKLNQELLSMDVTTSMIRMHGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + + F+NGR ++  +    I  AY   +P+G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGVRQFFFVNGRYMRHPYFHKAIAEAYERLVPVGEQVSYFIYFEVDPAHIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++ + +     S          I +F      +   P 
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKETLGRFNAVPSIDFDTEGMPDIPAFESSRQGRVTPPS 360

Query: 358 YATSLTNT------------------------QEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            +   +                           E LF    R +  +    + P      
Sbjct: 361 ASYDPSYNPFHVSSSVPPSSYSAASSFRKPTDWEPLFDGLERKTPVEPEAEEMPPEEPTL 420

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                 E           Q   +YI++    GL+I++Q  AH R+++++  +     +  
Sbjct: 421 YDAHPEETVKEITTQH-YQYKGSYILTSVKSGLMIINQQRAHVRILYDRYMRQIADKRHV 479

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LL PE++     E  ++ E  +DL  LG      G  + AI  +PA +   N  +L+
Sbjct: 480 SQRLLFPEMVHFSASEIPVLEEIKDDLLALGFDLSNLGGGSYAINGVPAGIEGLNPERLV 539

Query: 514 RDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
            D++   I+      +++ ++++LA ++A   +I  G+ + S EMN L+  +      + 
Sbjct: 540 TDLVQTAIEKG--VHVKEEVQSLLALSLAKASAIVPGQVLTSEEMNNLVDGLFAVSTPNY 597

Query: 573 CNHGRPTFIKLKLSDIEKLFG 593
              G+     +K  DIEKLF 
Sbjct: 598 TPDGKIVLAVVKEEDIEKLFK 618


>gi|310828244|ref|YP_003960601.1| hypothetical protein ELI_2657 [Eubacterium limosum KIST612]
 gi|308739978|gb|ADO37638.1| hypothetical protein ELI_2657 [Eubacterium limosum KIST612]
          Length = 649

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 178/652 (27%), Positives = 317/652 (48%), Gaps = 63/652 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ L+ + IN+IAAGE+I RP   IKEL+EN++DA+S+RV   +  GGK+   +TDNG
Sbjct: 1   MKIKMLNNETINKIAAGEVIVRPVSVIKELVENAIDADSTRVSVAVEKGGKTSICVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+P+A +RH TSKI   +D  +I T GFRGEAL SI A+S + + ++  +   G
Sbjct: 61  VGIAYNEVPLAFKRHATSKILKIEDLESIDTLGFRGEALSSISAISRVRITTKTAEEEIG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +Q    G    + R    + GT + V DLF+  PAR   L+ ++ E  LI D++ +++++
Sbjct: 121 SQSFFEGGAFINQRVCTYDRGTEIMVTDLFYNTPARQKHLQKDKNEEKLIRDILEKLSLS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P++SFT+ +     +K       GN  + I  + G DF     ELN +++ + L+GY  
Sbjct: 181 HPEISFTYISDGREVFKTL---GTGNLKDVIESLYGRDFFKGLRELNVENSPMRLRGYIS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
             T  R    +   FIN R V++K +      AY   + + ++PV ++ +++  R +DVN
Sbjct: 238 DLTLTRSTREEQIFFINNRFVKNKSLSRAFEDAYEGYMMVHKHPVGIVFMDLPGRMLDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI------STSSVLSKKMISSFHQDNAPK 352
           +HPAK+ I+  N +++     Q I+  +  + +       T++    +  +       P 
Sbjct: 298 IHPAKTEIQILNESLVSILFKQGIRDCLKAQNLVVDVSDVTAATELPEETARTKLVEEPV 357

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLL------------------------------ 382
           + L   + + T   E    QE+R     L                               
Sbjct: 358 SFLSGESKNFTPVDETSKAQEHRPPVPQLPKTKAVRQGAVREEAERQTQKVPAVEKMEAR 417

Query: 383 ------PSDDPTYSEDNDPVEESE-------------ATHYQLGIACAQIHQNYIISQTT 423
                 P   P ++E     +E+                 ++      Q+   YI+ +  
Sbjct: 418 TPEPDVPEPLPVFTETQSTADETPRVAEPAPEYPRRKGPDFKNAKIIGQLFSTYILLEKG 477

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
           D ++++DQHAAHE  +++++++ F+      +Q+L+ P+ +++   E     E   +L R
Sbjct: 478 DEIIMLDQHAAHEAFLYQELKERFDQKSDFPAQSLMVPQPVEISVREADHFDELQPELMR 537

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
            G   + FG N + +R +P IL +     LL+  I+  +    +      +   + TM+C
Sbjct: 538 YGFDCDLFGENTLMVRSVPIILGEPQDVSLLKAFIEGRVYEDVSD--PRNLIERIITMSC 595

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            G+++  +++   E+  LL  M +  N   C HGRP  +KL+  +++KLF R
Sbjct: 596 KGAVKGHQELSREEIETLLDGMSRLDNPYTCPHGRPIILKLREYELKKLFKR 647


>gi|255037559|ref|YP_003088180.1| DNA mismatch repair protein MutL [Dyadobacter fermentans DSM 18053]
 gi|254950315|gb|ACT95015.1| DNA mismatch repair protein MutL [Dyadobacter fermentans DSM 18053]
          Length = 629

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 175/627 (27%), Positives = 318/627 (50%), Gaps = 41/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I NQIAAGE+++RP+  +KEL+EN++DA+++ V+ ++   G++  Q+ DNG G
Sbjct: 7   IQLLPDSIANQIAAGEVVQRPASVVKELMENAIDAKATNVQVILREAGRTLIQVIDNGTG 66

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI  S+D   I T GFRGEAL SI AV+ + + +R   +  G  
Sbjct: 67  MSETDARMSFERHATSKIRQSEDLFRIRTMGFRGEALASIAAVAQVEMRTRQESDELGTL 126

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I +  PVA   GT   +R+LFF +PAR NFLKS  VE   + D  +R+A+A+P
Sbjct: 127 IRIDGSEIKTQEPVACPKGTNFSIRNLFFNVPARRNFLKSNSVEMRHVLDEFQRVALAHP 186

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V FT     +  + +           RI  + G+ +        E ++ I ++GY G P
Sbjct: 187 EVGFTLHHNDTEVFNLQPV----KLVRRIIDIYGKSYREQLAYCQEDTSYIKVRGYIGKP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F R    + + F+N R ++  ++   + +A+  TIP G +P  VL ++IDP  +D+N+H
Sbjct: 243 EFARKTRGEQFFFVNDRFIKHNYMHHAVISAFDGTIPEGSHPFYVLFIDIDPSHIDINIH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-------MISSFHQDNAPKT 353
           P K+ I+F +   +   I+ +++KA+    +S S    +          +    +  P+T
Sbjct: 303 PTKTEIKFDDERSVYAIIMAAVKKAVGVYNLSQSIDFEENINFLNPTTPTDPSPNLIPRT 362

Query: 354 HLPKYATSLTNTQEKL---------------------------FLQENRLSTNDLLPSDD 386
            +P +A     ++                              F      ++  +     
Sbjct: 363 VMPDWAAQPRKSEGNASKSNLTNWSKLFEGLQNTDDRHRELAAFEMNAPSASRPVYQEQA 422

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
            T +   + +        +      Q+H  YI+SQ  DG++++DQ AA+ER+++E+ R+ 
Sbjct: 423 KTVASKVNRMASEVVAAPEADALLFQLHNRYILSQVKDGIMLIDQKAAYERILYERYRKM 482

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
             +     Q LL P+ I L   +  L+ E  +++  LG + + FG N + IR IPA L +
Sbjct: 483 LINRNGACQQLLFPKTIRLTHSDMQLVHETKKEIRSLGFEFDEFGTNELIIRGIPADLPE 542

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
           ++   L  ++I+++  S +   L  + E++  ++A   S+R   K+  +E++ L+ ++  
Sbjct: 543 ESEQDLFEELIEQLKQSYSDLKLN-KPESLSRSLAKRFSVRYAVKLSHMEIHTLMNQLFS 601

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + + ++   G P  + L +  +  +F 
Sbjct: 602 SSDPNRTPGGDPIIVLLTMDKLANIFR 628


>gi|220917323|ref|YP_002492627.1| DNA mismatch repair protein MutL [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|254766155|sp|B8J9F5|MUTL_ANAD2 RecName: Full=DNA mismatch repair protein mutL
 gi|219955177|gb|ACL65561.1| DNA mismatch repair protein MutL [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 607

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 173/607 (28%), Positives = 299/607 (49%), Gaps = 17/607 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   ++NQIAAGE++ERP+  +KEL+EN+LDA ++ V   +  GG +  ++ D+G 
Sbjct: 3   RIHVLPPGLVNQIAAGEVVERPASIVKELVENALDAGATSVGVDVEEGGLALVRVADDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A++RH TSK+ D    + I T GFRGEA+P+I +VS   L +   ++  G 
Sbjct: 63  GMDRDDALLALERHATSKLRDAEGLAAIGTMGFRGEAVPAIASVSRFRLDTSAGEDGAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G  +  V PVA   GT VEVRDLFF  PAR  F+++   E   +++ + R+A+A 
Sbjct: 123 RVEIEGGVLGEVAPVARPRGTTVEVRDLFFNTPARRKFMRAASTEAGHVSEAVIRLALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT  +              G   +R  Q +G +   + + ++ +  E+ + G    
Sbjct: 183 PDVGFTLRSAGRLVLGARAG---GGLADRAGQALGREAHRHLLPVDARRGEVRVHGLICS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +       Y+F+NGR V+D+     +  A+A T+P GR+P  VL +E+   +VDVNV
Sbjct: 240 PDHSEATGRALYLFVNGRYVRDRAAAHAVLRAFAGTLPPGRHPAGVLFVELPLHRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-----------QD 348
           HP K  +RF     + + +  ++  A+       +       + + +           ++
Sbjct: 300 HPQKLEVRFAEGREVFDALFHTVAGALRTAPWLRARPQPGDGVPAGNGGGPAPVPVAGEE 359

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
            A      + A     +   L            L                    ++    
Sbjct: 360 AAEVLAWARAARPPEGSGATLVQPAPGAWATGRLAFPVAPAPGAGPEAGPRPEGYFAALR 419

Query: 409 ACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
              Q  + Y++ +   G LV++DQHA+HER++F ++R+ F + +I  Q  L P+++ L  
Sbjct: 420 YVGQHARTYLLCEAPGGTLVVIDQHASHERMLFHRLREAFRARRIPVQPFLLPQVVTLPP 479

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
                +     +L RLG  AE FG  A A++  PA L+  ++  LL D+  ++ +     
Sbjct: 480 AAARALEAGLAELGRLGFDAEPFGGEAFAVKGAPAALAGVDLTALLTDLGSQLAEVERGS 539

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            + D   ++LATMAC+ ++R+ + +   E   LL  ++     ++C HGRP   +L L+D
Sbjct: 540 AVDDAFHDLLATMACHAAVRANQDVSPEEARALLDGLDAIDFKARCPHGRPVVFELSLAD 599

Query: 588 IEKLFGR 594
           +E+  GR
Sbjct: 600 LERRVGR 606


>gi|73748885|ref|YP_308124.1| DNA mismatch repair protein, MutL [Dehalococcoides sp. CBDB1]
 gi|73660601|emb|CAI83208.1| DNA mismatch repair protein, MutL [Dehalococcoides sp. CBDB1]
          Length = 566

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/599 (30%), Positives = 316/599 (52%), Gaps = 39/599 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  I +IAAGE+IERP+  +KEL+ENSLDAE+ RV+ VI  GG  + +++D+G
Sbjct: 1   MPIKLLDKATIARIAAGEVIERPASVVKELLENSLDAEAKRVDIVIREGGIGYIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+TS E+ +A +RH TSK+S  +D   I + GFRGEALPSI AV+ L +++      +G
Sbjct: 61  CGITSSEVLLAFERHATSKLSSFEDIYAIASLGFRGEALPSIAAVADLEMLTAVRTEESG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +++SG ++     +A   GT + +  LF  +PARL FLK+ Q E + +T+V+   A+A
Sbjct: 121 TYLSLSGGEMLKHTRMARAAGTSIRLSRLFSRVPARLKFLKTPQHEASKVTEVVVSYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE---ITLQG 235
           YP+V F+ +    N         NG   + + +V G D  +  ++L   +     I + G
Sbjct: 181 YPEVKFSLNVDGRNTLN---TPGNGKLRDAVLEVYGSDAASKMLDLENDTYRSSAINISG 237

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P  +R N N  + F+N R +Q + +   +  AY+  +  GRYP+ V+ + +    V
Sbjct: 238 LVSPPEVSRSNRNSLHFFVNRRLIQSRALQRAVEQAYSGLLTAGRYPMGVINIRLSGALV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HP K+ ++F + + +   + ++++  + +                 H + A   + 
Sbjct: 298 DVNIHPTKAEVKFSDESAVFTSVQRAVRSVLVE------------KPPLLHVEEARPVYQ 345

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P+        QE ++ +  +L   +         S  +  ++ ++ +   L     Q+  
Sbjct: 346 PE-----AGRQEHIWAEVQKLPNANT--------SYISPVIQSAKTSSLPLLRLVGQVGG 392

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y++++  DGL I+DQHAAHER+ +E++  +  S +   Q+LL P I++L   + A+I +
Sbjct: 393 LYLLAEGPDGLYIIDQHAAHERIRYEEIAAETYSAR-ACQSLLEPFILELNPVQEAMIEK 451

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              +L  +G + E FG     ++ IPA L       LL ++ D   D+       +  E 
Sbjct: 452 CKSELELMGFEMEEFGRRVYRVKSIPAGLKAHQAKALLAELADNPKDAPA-----EIKER 506

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++  MAC+ ++R+G+ +   EM  LL ++EK      C HGRPT +K+  S +EK F R
Sbjct: 507 LIRLMACHTAVRAGQVLTDAEMRELLLKLEKTGIPGHCPHGRPTIVKIDFSQLEKDFKR 565


>gi|258645505|ref|ZP_05732974.1| putative DNA mismatch repair protein MutL [Dialister invisus DSM
           15470]
 gi|260402859|gb|EEW96406.1| putative DNA mismatch repair protein MutL [Dialister invisus DSM
           15470]
          Length = 645

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 181/647 (27%), Positives = 307/647 (47%), Gaps = 61/647 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E   NQIAAGE++ERP  A+KEL+ENS+DA +  +E  IA GG ++ ++TD+G G
Sbjct: 4   IHILDEVTSNQIAAGEVVERPVNAVKELVENSIDAGAHMIEVEIADGGMTYIRVTDDGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT E+  ++V RH TSKIS  ++  +I + GFRGEALPSI +VS  T+ +R  ++  G  
Sbjct: 64  MTREDAKLSVIRHATSKISSVENIYHICSLGFRGEALPSIMSVSRTTITTRRAEDMEGTA 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++G  +  ++ V    GT VEVR+LF+ +PAR  FLKSE+ E++ I  +I ++A+A P
Sbjct: 124 IDVTGGAVEKIKGVGAPAGTTVEVRELFYNVPARKKFLKSERTESSRINTMIGKLALANP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SFT          +     NG   + IS + G       +E+  +  +  + G    P
Sbjct: 184 DISFTLINNGR---TVIETPGNGRLMDVISALYGVKVTGEMLEVESEGEDSVMTGMISKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  + +     + IN R V+   +   +  AY   +P   YP++VL   + P  +DVNVH
Sbjct: 241 SLLKSSRQNQTIIINRRVVESAVVTKAVDNAYHSLLPKNGYPIMVLTFTLPPESIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV------------------------ 336
           P K  I+F +   I   +  ++   +  +    S V                        
Sbjct: 301 PQKREIKFDDEQKIFRLVYHAVLNTLTSQSAPDSIVKDMIKEPAHQVPLGTELDLSKVVV 360

Query: 337 -----------------LSKKMISSFHQDNAPKTHLPKY------------ATSLTNTQE 367
                            + +K   S    ++       Y            + S T+ + 
Sbjct: 361 EDKQLGAHDIGLTEADGVVQKPQPSVPVQSSWNESFSSYGNRDFRKSEHAVSRSGTDFET 420

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
           K    E   +T   +   + +   +++P+ E  A      I   Q+   +I+ Q    L 
Sbjct: 421 KQTRSEILSTTPVFIKPHEESMKAESEPLFEVPAEKDDPVIPLGQVADCFILCQHGSDLF 480

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           I+DQHAAHER+ +++      +  I  Q +L P +ID+   +  L+ E +E++ +LGI  
Sbjct: 481 IIDQHAAHERVRYDRF--AAKTDGIPVQAILIPYLIDVEPEDMDLLFEKEEEIKKLGITF 538

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E+ G + I I   P   S+ ++ ++++D++    D +     +     ++A  AC G+I+
Sbjct: 539 EQAGRDVIRITGAPEDFSENDMDRIIKDLLFTFHDENMPSP-ETLRHRMMAYAACRGAIK 597

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            G  +   +M  L+ ++        C HGRPT +K    ++ +LF R
Sbjct: 598 RGDPLNVRQMKELITDLFHTTRPFVCPHGRPTIVKFTPDELGRLFDR 644


>gi|289432881|ref|YP_003462754.1| DNA mismatch repair protein MutL [Dehalococcoides sp. GT]
 gi|288946601|gb|ADC74298.1| DNA mismatch repair protein MutL [Dehalococcoides sp. GT]
          Length = 566

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/599 (30%), Positives = 317/599 (52%), Gaps = 39/599 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  I +IAAGE+IERP+  +KEL+ENSLDAE+ RV+ VI  GG  + +++D+G
Sbjct: 1   MPIKLLDKATIARIAAGEVIERPASVVKELLENSLDAEAKRVDIVIREGGIGYIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+TS E+ +A +RH TSK+S  +D   I + GFRGEALPSI AV+ L +++      +G
Sbjct: 61  CGITSSEVLLAFERHATSKLSSFEDIYAIASLGFRGEALPSIAAVADLEMLTAVRTEESG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +++SG ++     +A   GT +++  LF  +PARL FLK+ Q E + +T+V+   A+A
Sbjct: 121 TYLSLSGGEMLKHTRMARAAGTSIKLSRLFSRVPARLKFLKTPQHEASKVTEVVVSYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE---ITLQG 235
           YP+V F+ +    N         NG   + + +V G D  +  ++L   +     I + G
Sbjct: 181 YPEVKFSLNVDGRNTLN---TPGNGKLRDAVLEVYGSDAASKMLDLENDTYRSSAINISG 237

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P  +R N N  + F+N R +Q + +   +  AY+  +  GRYP+ V+ + +    V
Sbjct: 238 LVSPPEVSRSNRNSLHFFVNRRLIQSRALQRAVEQAYSGLLTAGRYPMGVINIRLSGALV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HP K+ ++F + + +   + ++++  + +                 H + A   + 
Sbjct: 298 DVNIHPTKAEVKFSDESAVFTSVQRAVRSVLVE------------KPPLLHVEEARPVYQ 345

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P+        QE ++ +  +L   +         S  +  ++ ++ +   L     Q+  
Sbjct: 346 PE-----AGRQEHIWAEVQKLPNANT--------SYISPVIQSAKTSSLPLLRLVGQVGG 392

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y++++  DGL I+DQHAAHER+ +E++  +  S +   Q+LL P I++L   + A+I +
Sbjct: 393 LYLLAEGPDGLYIIDQHAAHERIRYEEIAAETYSAR-ACQSLLEPFILELNPVQEAMIEK 451

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              +L  +G + E FG     ++ IPA L       LL ++ D   D+       +  E 
Sbjct: 452 CKSELELMGFEMEEFGRRVYRVKSIPAGLKAHQAKALLAELADNPKDAPA-----EIKER 506

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++  MAC+ ++R+G+ +   EM  LL ++EK      C HGRPT +K+  S +EK F R
Sbjct: 507 LIRLMACHTAVRAGQVLTDAEMRELLLKLEKTGIPGHCPHGRPTIVKIDFSQLEKDFKR 565


>gi|325289885|ref|YP_004266066.1| DNA mismatch repair protein mutL [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965286|gb|ADY56065.1| DNA mismatch repair protein mutL [Syntrophobotulus glycolicus DSM
           8271]
          Length = 663

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/660 (28%), Positives = 307/660 (46%), Gaps = 70/660 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L++  INQIAAGE++ERP   +KEL+ENSLDA +  +E  + G G +  ++ D+G 
Sbjct: 4   RIKILNQLCINQIAAGEVVERPLSVVKELVENSLDAGAEHIEITVEGNGTALIRVRDDGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+  AV  H TSKIS  +D   + T GFRGEALPSI +VS + ++SR   +  GA
Sbjct: 64  GIAPEELQTAVLPHATSKISHIEDLDTLATLGFRGEALPSIASVSRMEIVSRTADSALGA 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +++I   ++ +        GT V +RDLF+T PAR  FLKS+  E  LI+D++ ++A+  
Sbjct: 124 RLSIENSEVKNFEETGCPKGTTVTIRDLFYTTPARYKFLKSQGTEFGLISDMVSKLALTK 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F     K   +       +G+    I+ V+G       V ++  +    + GY  +
Sbjct: 184 PAVRFILKHAKHTVFM---SPGDGSLRHVIASVMGSQIAQKLVPVSFCNEHYAVSGYLSM 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR ++ K +   ++ ++   IP   YP+VVL +E+ P   DVNV
Sbjct: 241 PDLTRNNGNYQVLMINGRIIRSKQLRQAVKNSFHTLIPHNTYPIVVLNIELSPSLYDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKA-----------------------------INKKG 330
           HP+K  I+F+    +  F+   + KA                             I+   
Sbjct: 301 HPSKMEIKFKQENELMTFLTAQLNKAVLDGRKIERIDLHPPAFGQAKETSLFLNEISDSL 360

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR--------------- 375
             + +V ++     F   +   +   +       T   LF Q  +               
Sbjct: 361 KESQTVYARNKDFDFRSKSNTSSRHTEQPMETVETLSDLFRQSKQNEIESNPRGINHQEA 420

Query: 376 -----------LSTNDLLPSDDPTYSEDNDPVEESEATHYQL----------GIACAQIH 414
                      ++TN +  + +   ++ +D  ++   T +              A  QI 
Sbjct: 421 ITGKNINDLTEINTNAIDTNINHIANDPSDIKDKINHTDHFNDLNSVNPLGNLRALGQIM 480

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             YI++     L I+DQHAAHER+  EK+ + F      SQ LL P  + L   E  +++
Sbjct: 481 GTYILATDDQSLYIIDQHAAHERITVEKLYRSFQKDTPDSQLLLLPITLTLSVHEEQIVL 540

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            + E   + G   E+FG     +R +P I +     ++    IDE++   TT +L++ IE
Sbjct: 541 SNFELFRKSGFILEQFGDRTYLLRGVPLIKNLDKPEEIFLSFIDELMKDRTTVSLENIIE 600

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             + T AC  SI+    +   +M  LL  + +  N   C HGRP  I++   ++ K F R
Sbjct: 601 KWIFTAACRNSIKGNDYLSIPDMQALLFNLSRAENPYTCPHGRPVIIEITQEELTKKFKR 660


>gi|260591266|ref|ZP_05856724.1| DNA mismatch repair protein MutL [Prevotella veroralis F0319]
 gi|260537131|gb|EEX19748.1| DNA mismatch repair protein MutL [Prevotella veroralis F0319]
          Length = 623

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/623 (27%), Positives = 305/623 (48%), Gaps = 39/623 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA ++ +  ++   G++  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGATSINVLVVDAGRTSIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  ++HT GFRGEAL SI AV+ + L +R   ++ G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFSLHTMGFRGEALASIAAVAQIELKTRMANDDLGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++ISG + ++  P +   G+   V +LFF +PAR  FLKS   E N I +   R+ + YP
Sbjct: 125 LSISGSRFTNQEPCSCPVGSNFLVENLFFNVPARRKFLKSNTTELNNIINAFERIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  +  + +       N+ +RI +V G+    + + ++  ++   + G+ G P
Sbjct: 185 HIAFTLYSNGTELFNLRSC----NYRQRIVEVFGKRLNQDLLSIDVDTSLCHIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    Q Y F+N R ++  +    + TA+   IP G      L  E+ P  +DVN+H
Sbjct: 241 ESARKKTPQQYFFVNERYMKHPYFHKAVITAFDRLIPQGEQIPYFLYFEVPPTNIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLPKYA 359
           P K+ I+F N   I   ++ ++++A+ +     S     +        D    T  PK  
Sbjct: 301 PTKTEIKFENEQAIWQILLAAVKEAVGRFNDIPSIDFDTEGKPDIPVFDPHSGTKAPKVE 360

Query: 360 TSLTNTQEKLFLQENRLSTND-----------------------------LLPSDDPTYS 390
            + +    K   Q  + S  D                               P+D+    
Sbjct: 361 INPSFNPFKQTAQPQKPSVPDGWEELYSGLDGNAEIRQSKLFEQDDLDVNTTPTDESLII 420

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                   +E+   +   +  Q   +YI++    GL+I+DQH AH R+++E+  +  +S 
Sbjct: 421 SSASTTSTNESMIEEKSPSHYQYKGSYIMTAVKSGLMIIDQHRAHIRILYEEYLRQLSSH 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           K  SQ +L PE++     +  +I     ++  +G + +  G ++ A+  +PA +   N  
Sbjct: 481 KAHSQKVLFPEVVQFTVSDKLIIDRILPEMAEMGFQLDSLGGDSYAVNGVPAGIEGLNAV 540

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            L++D++   ++S  +  +++ I+  LA ++A   +I  G+ + + EM+ L+ E+    N
Sbjct: 541 SLIQDMVASAVESGAS--VKEDIDRTLALSLARNAAIPQGQVLTNSEMDNLVNELFTCEN 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLF 592
            +    G P    +K  DIE LF
Sbjct: 599 VNYTPSGEPIIAVMKQHDIEHLF 621


>gi|88803291|ref|ZP_01118817.1| putative DNA mismatch repair protein [Polaribacter irgensii 23-P]
 gi|88780857|gb|EAR12036.1| putative DNA mismatch repair protein [Polaribacter irgensii 23-P]
          Length = 604

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 159/603 (26%), Positives = 301/603 (49%), Gaps = 18/603 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KELIEN++DA ++ ++ ++   GK+  Q+ D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELIENAIDAGATNIKLLLKDAGKTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  M+ +RH TSKI  ++D  N++T GFRGEAL SI A+SH+ L ++   +  G  
Sbjct: 65  MSATDARMSFERHATSKIQKAEDLFNLNTKGFRGEALASIAAISHVELKTKRSDDELGTG 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G K+ S   ++   GT   V++LF+ IPAR NFLKS+ VET  I D  +R+A+A+P
Sbjct: 125 IKIEGSKVISQDFISTGKGTSFAVKNLFYNIPARRNFLKSDTVETRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF      +  Y +      GN  +RI  V G       V +NEK++ + +QG+   P
Sbjct: 185 DISFLLHHNNNEIYHLK----EGNLRQRIVAVFGIKMNEKLVPINEKTDLVAIQGFIAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F++    + + F+N R ++  ++   + +A+   +  G +P   L L +    +D+N+H
Sbjct: 241 EFSKRKRGEQFFFVNNRFIKSSYLNHAVVSAFDGLLESGAHPSYFLYLTVPANSIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N  ++   +  +++ ++ +  ++     ++        +  P +       
Sbjct: 301 PTKTEIKFDNEKVLYAILRATVKHSLGQYNVAPVLDFNRDAGLDTPYNFQPNSKGTALPK 360

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN-----------DPVEESEATHYQLGIA 409
              +     F +E +   N     +  T S ++                 E    +    
Sbjct: 361 VFVDPDFNPFKEEFQKEINFPFKREKETQSWESLYTAVDASDAGQNASLFEHLEEEKTQK 420

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             QI + Y++S    G+V+++Q  AH+R+++E+  +     +  SQ LL P  I     E
Sbjct: 421 TFQIQRKYVMSLIKSGVVLINQSLAHQRILYEQFLESITIKEANSQQLLFPVQISFSSAE 480

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             +I     +L   G   + F  +++ I+ IP  +++  I  +L +++++ +D     T 
Sbjct: 481 IEMIYTIKTELENAGFSFDEFTKDSVTIKGIPISVTESKISIILEELLND-MDLEVPDTS 539

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               + +  + A   +I++G ++   E   L+ ++      +    G+ +F  L L  I+
Sbjct: 540 FSHFDVMAKSFAKTLAIKTGTRLSEKEQESLVNDLFSCKEPTISPFGKASFKTLTLQQID 599

Query: 590 KLF 592
            LF
Sbjct: 600 HLF 602


>gi|197122538|ref|YP_002134489.1| DNA mismatch repair protein [Anaeromyxobacter sp. K]
 gi|229890120|sp|B4UCW3|MUTL_ANASK RecName: Full=DNA mismatch repair protein mutL
 gi|196172387|gb|ACG73360.1| DNA mismatch repair protein MutL [Anaeromyxobacter sp. K]
          Length = 607

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/607 (28%), Positives = 297/607 (48%), Gaps = 17/607 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   ++NQIAAGE++ERP+  +KEL+EN+LDA ++ V   +  GG +  ++ D+G 
Sbjct: 3   RIHVLPPGLVNQIAAGEVVERPASIVKELVENALDAGATSVGVDVEEGGLALVRVADDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A++RH TSK+ D    + I T GFRGEA+P+I +VS   L +   ++  G 
Sbjct: 63  GMDRDDALLALERHATSKLRDAEGLAAIGTMGFRGEAVPAIASVSRFRLDTSAGEDGAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G  +  V PVA   GT VEVRDLFF  PAR  F+++   E   +++ + R+A+A 
Sbjct: 123 RVEIEGGVLGEVAPVARPRGTTVEVRDLFFNTPARRKFMRAASTEAGHVSEAVIRLALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT  +              G   +R  Q +G +   + + ++ +  E+ + G    
Sbjct: 183 PDVGFTLRSGGRLVLGARAG---GGLADRAGQALGREAHRHLLPVDARRGEVRVHGLICS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +       Y+F+NGR V+D+     +  A+A T+P GR+P  VL +E+   +VDVNV
Sbjct: 240 PDHSEATGRALYLFVNGRYVRDRAAAHAVLRAFAGTLPPGRHPAGVLFVELPLHRVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----------LSKKMISSFHQD 348
           HP K  +RF     + + +  ++  A+       +                  +    ++
Sbjct: 300 HPQKLEVRFAEGREVFDALFHTVAGALRTAPWLRARPQPGDGVPVGDGGGPAPVPVAGEE 359

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
            A      + A     +   L            L                    ++    
Sbjct: 360 AAEVLAWARAARPPEGSGATLVQPAPGAWATGRLAFPVVPAPGAGPEAGPRPEGYFAGLR 419

Query: 409 ACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
              Q  + Y++ +   G LV++DQHA+HER++F ++R+ F + +I  Q  L P+++ L  
Sbjct: 420 YVGQHARTYLLCEAPGGTLVVIDQHASHERMLFHRLREAFRARRIPVQPFLLPQVVTLPP 479

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
                +     +L RLG  AE FG  A A++  PA L+  ++  LL D+  ++ +     
Sbjct: 480 AAARALEAGLAELGRLGFDAEPFGGEAFAVKGAPAALAGVDLTALLTDLGSQLAEVERGS 539

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            + D   ++LATMAC+ ++R+ + +   E   LL  ++     ++C HGRP   +L L+D
Sbjct: 540 AVDDAFHDLLATMACHAAVRANQDVSPEEARALLDGLDAIDFKARCPHGRPVVFELSLAD 599

Query: 588 IEKLFGR 594
           +E+  GR
Sbjct: 600 LERRVGR 606


>gi|126663375|ref|ZP_01734373.1| DNA mismatch repair protein [Flavobacteria bacterium BAL38]
 gi|126625033|gb|EAZ95723.1| DNA mismatch repair protein [Flavobacteria bacterium BAL38]
          Length = 617

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 160/615 (26%), Positives = 301/615 (48%), Gaps = 30/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA++S ++ ++   GK+  Q+ DNG G
Sbjct: 6   IQLLPDHVANQIAAGEVVQRPASVVKELLENAVDAKASDIKLIVKEAGKTLVQVIDNGLG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M + +  +  +RH TSKI   +D  ++HT GFRGEAL SI A++H+ + ++  Q   G  
Sbjct: 66  MNTTDARLCFERHATSKIRQAEDLFDLHTKGFRGEALASIAAIAHVEMKTKQDQEELGNH 125

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G K+       +  GT   V++LFF IPAR NFLKSE VE   + D  +R+A+A+P
Sbjct: 126 IVIEGSKLVKQEVAVLPKGTSFAVKNLFFNIPARRNFLKSETVEFRHVMDEFQRVAMAHP 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SFT     S  Y +       N+ +RI  + G       V + E ++ IT+ G+ G P
Sbjct: 186 SISFTLIHNGSELYNLPS----SNYRQRIVNIFGGKTNEKLVPVTEDTDLITISGFVGKP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + + F+N R ++  ++   I  AY   +  G  P   L L++ P  +D+N+H
Sbjct: 242 EFAKKSRGEQFFFVNDRYIKSAYLHHAIMNAYEGLLKEGNQPSYFLYLQVPPHTIDINIH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM--------------ISSFH 346
           P K+ I+F +   +   +  +++ ++ +  ++      +                  +  
Sbjct: 302 PTKTEIKFDDEHSLYAILRSAVKHSLGQFNVAPVLDFERDANLDTPYQYKNKDADFPTIQ 361

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT---- 402
            D+       +  T   ++      + N  +   L         E +    E+E      
Sbjct: 362 VDSNFNPFANEKPTKSLSSFGSYKKETNTANWESLYVGLKQDTQELDTFSFETEEVTSKL 421

Query: 403 -----HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                  ++  +  QIH+ YI+S    G++++DQ  AH+R+++E+   +    K +SQ L
Sbjct: 422 FDDELEEKVPTSTYQIHKKYIVSAIKSGMLVIDQGRAHQRILYEQFLTNITVNKASSQQL 481

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P  +     E  L+ E    L   G   + F  +++ I  +P  +++  +  ++ ++I
Sbjct: 482 LFPLELYFSSDEMILLKELQPVLENTGFVFDAFNSDSLQISGLPIAMAESEVSIVIEELI 541

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           + + +     +   + ++I  +MA   ++++G  +   E   L+  +    + +     +
Sbjct: 542 NNLQNEIPESSF-SQSDSIAKSMAKSMAVKTGTYLTVKEQENLVNSLFACKDPNVSPFQK 600

Query: 578 PTFIKLKLSDIEKLF 592
           PTFI L + D++K F
Sbjct: 601 PTFITLTVEDLDKRF 615


>gi|317504763|ref|ZP_07962723.1| DNA mismatch repair protein MutL [Prevotella salivae DSM 15606]
 gi|315664145|gb|EFV03852.1| DNA mismatch repair protein MutL [Prevotella salivae DSM 15606]
          Length = 610

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 167/609 (27%), Positives = 290/609 (47%), Gaps = 25/609 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+ENS+DA +  ++  +   GK+   +TD+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENSVDAGAKNIQIQVIDAGKTTILVTDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  ++ +RH TSKI   DD   +HT GFRGEAL SI AV+ + L +R   +  G  
Sbjct: 65  MSATDARLSFERHATSKIRKADDLFALHTMGFRGEALASIAAVAQIELKTRQESDEVGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++ISG +     P +   G+   V +LF+ +PAR  FLKS   E N I     R+A+ YP
Sbjct: 125 LSISGSRFVGQEPCSCAVGSSFSVNNLFYNVPARRKFLKSNSTELNNIITAFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  +  + +      G   +RI  + G+      + +   +    + GY G P
Sbjct: 185 DIAFTLQSNGTELFNLKA----GVLRQRIIDIFGKRLNQELLSVKVDTTMCRINGYVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  A+   +P G      L  E+ P+ +DVN+H
Sbjct: 241 ESARKKGAHQYFFVNGRYMKHPYFNKAVMAAFERLVPTGEQVPYFLYFEVAPKDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---------------- 344
           P K+ I+F N   I   +  ++++A++      S     +                    
Sbjct: 301 PTKTEIKFENEVPIWQILSAAVKEAVSMFNDIPSIDFDTEGRPEIPVYNPTKNVEVPKVK 360

Query: 345 FHQDNAP--KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
           ++ D  P   +     ++S +N  E+L+    + S    L S   T  +  +  E +E  
Sbjct: 361 YNPDYNPFRNSSEAPRSSSPSNRWEELYQNLQKPSQETELFSSKMTLPDIQEEEEPTENV 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
             +   +  Q    YI++    GL+I+DQH AH R++F++ ++    ++  +Q LL PE 
Sbjct: 421 IEEKSPSHYQYKGRYIMTAVKSGLMIIDQHRAHVRILFDRYQEQLKRSEAAAQKLLFPEN 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           +     E   + +   +L  LG +    G +  AI  +P+ L   ++  LLRD+I    +
Sbjct: 481 LHCTASEEVTLSKILPELQDLGFEISPLGGSTYAILAVPSGLEGLDMINLLRDMILSAQE 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             T    ++    +  TMA   +I  G+ + + EM  +   +  + N +    G+     
Sbjct: 541 KPTNL-REEISRELALTMARKAAIPQGQVLNNAEMENIFNSLFSSSNPNYTPDGKNILCI 599

Query: 583 LKLSDIEKL 591
           LK ++IE L
Sbjct: 600 LKQNEIEHL 608


>gi|189218041|ref|YP_001938683.1| DNA mismatch repair enzyme MutL [Methylacidiphilum infernorum V4]
 gi|189184899|gb|ACD82084.1| DNA mismatch repair enzyme MutL [Methylacidiphilum infernorum V4]
          Length = 595

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/596 (28%), Positives = 300/596 (50%), Gaps = 20/596 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L+E+++NQIAAGE++ERP+  +KEL+EN++DA +++++     GG S+ ++ D+G 
Sbjct: 4   KIHILTEEVVNQIAAGEVVERPASILKELLENAIDAGATQIDVETRSGGISWIKVKDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  + ++RH TSK+   DDFS + T+GFRGEA+P+I +V+ L L ++      G 
Sbjct: 64  GMSKEDALLCLERHATSKLFSMDDFSRLSTYGFRGEAIPAIASVTKLILATQERDCPEGV 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G  I  V   A   GT V    LF+ +P RL FLKS + E   +   +   A+++
Sbjct: 124 IIEVHGGTIIRVEETAGLVGTSVSTSSLFYNLPPRLKFLKSPRTELLHLQRQLIFAALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F ++    +           +  +RI  V+GE++      +  +     + G    
Sbjct: 184 PEIGFRYNH---SPGGKGGWEKGEDLRQRIISVLGEEWEKELCWIEREDEGFRIYGAVSK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +    + F+N R V+ K     +  AY  ++  G YP+ VL +E+ P ++DVNV
Sbjct: 241 PGVGRPSKEDMFFFVNKRPVESKSFYLGVIDAYRNSLMKGLYPLCVLFVEVHPGEIDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+     R+F+ ++I   ++     +S+++ +K       D++         
Sbjct: 301 HPTKKEVRFKREYAFRDFVHKAILGELSSYKPFSSALMEEKGYDRMLPDSSKAVAQKSSC 360

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            S+    E+LF ++       L               +  +                YI 
Sbjct: 361 ISVEAQMEELFDKQPVFHAKALE--------------DNEQKEKINPYKIVGLFSSLYIA 406

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +T +G++++DQHAAHER++FEK+   F S +  SQ L+TP +I L   E A++      
Sbjct: 407 IETAEGIMLIDQHAAHERVLFEKLLLQFESMQKHSQKLITPLLISLSSTESAILSHSLPF 466

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
             +LG +   FG ++  +  IP+ + + +  Q  R+++ E++++                
Sbjct: 467 FEQLGFEVRPFGLSSFLLESIPSGVKRMDYEQFFREVLAELVETDRQKKTARFYWQRDIA 526

Query: 540 MA-CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +A C  +I+SG  +   E   L++ +      + C HGRPT+I++   +IEK FGR
Sbjct: 527 LAVCRQAIKSGDPLTKEEQEELVKNLFACKLPNTCPHGRPTWIRISFQEIEKRFGR 582


>gi|315924592|ref|ZP_07920811.1| DNA mismatch repair protein MutL [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622122|gb|EFV02084.1| DNA mismatch repair protein MutL [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 636

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/636 (27%), Positives = 309/636 (48%), Gaps = 48/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L+ + I +IAAGE+I RP+  +KELIEN++DA S+RV  ++  GGK   ++ DNG 
Sbjct: 3   KIKMLNHETIEKIAAGEVIVRPASVVKELIENAIDAGSTRVAIIVEKGGKKRIRVADNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   EIP+A  RH TSK+S   D + + T GFRGEAL SI AVS + + +       G+
Sbjct: 63  GIHYHEIPLAFTRHATSKLSTISDLNTLDTLGFRGEALASIAAVSRIVVKTIASDEEMGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  + G ++ + R +  N GT ++V DLF+ +PAR   ++ ++ E   I D++ R+A+++
Sbjct: 123 ETLLEGGRVVNQRVMPFNRGTDIDVSDLFYNVPARQKHMQKDKTEGMAIHDLMERLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT++       ++     +G   + I+ + G  F+N+   LN  +  + L+GY G 
Sbjct: 183 PEIAFTYTADGR---RVFSTPGSGELSDVIACLYGRSFLNSLHPLNVANAPMRLEGYIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + ++   F+N R  ++K +     TAY   +   ++PV ++ +E+  + +DVN+
Sbjct: 240 LTAMRSSRDRQLFFMNSRVFENKALSHAFETAYEGYLMHHKHPVGIVFIELPGKMLDVNM 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-------------------------------- 327
           HPAK+ I   N +++     Q I+  +                                 
Sbjct: 300 HPAKTEIGILNQSLVDILFRQGIRTTVRAMDLTVDLGKALDEEPAVAKFVPTEEAQAFEE 359

Query: 328 ----KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
               +  I   +       ++   + A  T     +      + +L  Q   +   DL P
Sbjct: 360 VPGEQMQIKEQTPFFDVPENAPVPNQALTTFRAVSSFEAPEQKSQLLRQTVSVKPPDLSP 419

Query: 384 SDDPTYSEDNDPVEESEATHYQLG----IACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
               T  E     E ++A    L     +   Q+ + ++I +    ++++DQHAAHE  +
Sbjct: 420 EAAATVHESLQDYEAAKAGRPHLDLSDAVVIGQLFKTFVILEKGREVILIDQHAAHEAFM 479

Query: 440 FEKMRQDF-NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
           FE+ R+ F       +QTL+ PE +D+     A   E    L R G   + FG   + +R
Sbjct: 480 FEQYRKQFLTDAAADAQTLMVPEPVDISAKLMACFEELKPALLRKGYDCDVFGDTTLMVR 539

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +P IL +     L+   ++ ++       L+++    +ATMAC  +++  + +   E+ 
Sbjct: 540 SVPLILGEPQPTALVPLWMEALLT--GDRELREKRWLKVATMACKAAVKGNQDLTPEEIQ 597

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            L+  + +  N   C HGRP  + L   ++EKLF R
Sbjct: 598 TLIDALMRLENPYTCPHGRPIILHLSQYELEKLFKR 633


>gi|297617260|ref|YP_003702419.1| DNA mismatch repair protein MutL [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145097|gb|ADI01854.1| DNA mismatch repair protein MutL [Syntrophothermus lipocalidus DSM
           12680]
          Length = 571

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/596 (30%), Positives = 306/596 (51%), Gaps = 28/596 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I  L + ++N IAAGE+IERP+  +KEL+EN++DA ++R+E  + GGG     + DNG
Sbjct: 1   MRIHVLPDSLVNLIAAGEVIERPASVVKELVENAVDASATRIEISVKGGGIDEIVVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  EE+ +A  RH TSKI+   D  NI T GFRGEALPSI AV+ + +++   +   G
Sbjct: 61  HGMEQEELALAFTRHATSKIASKPDLYNIRTLGFRGEALPSIAAVAKVEVLTASREGE-G 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++I+I+G ++  V P     GT V+V DLFF  PAR  FLKS+  E N + + + R+A++
Sbjct: 120 SRISIAGGQVVDVSPWPCPVGTQVKVSDLFFNTPARRKFLKSKVTEANHVYETVTRLALS 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P++SF+ +  K   +K      N    + ++ V+G D++   V++ +   +I L G   
Sbjct: 180 RPEISFSLAHEKRQVFK---TPGNNRLEDTVAAVLGIDYLEKMVKVEKLEGDIGLWGLVS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F R N     + +N R V+   +   +  AY   +    +P  VL +++ P  VDVN
Sbjct: 237 RPDFTRSNRRDQILIVNQRVVRSPLLFRALDEAYRGLLLGKEFPAAVLFIQVPPNAVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K+ ++F +   I + + Q+++ A+ +  +       +    S   ++       +Y
Sbjct: 297 VHPQKAEVKFADEKGIFDLVRQAVRLALTRHDLPR----GESCFGSGLSESKVAELGSRY 352

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           A   TN  +   L      ++    +D          V               Q  + Y+
Sbjct: 353 AALSTNLVQMEHLLPPTDESDVFSFADKTQVLPSGYTV-------------LGQWLRTYV 399

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I    + L +VDQHAAHER+++++MR+  + T   +Q L+ P  + L   +  ++  + E
Sbjct: 400 IVSAGEELWLVDQHAAHERVLYDRMRK--DQTPENTQPLVIPVSLSLPASKMEVLENNLE 457

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L   G   +  G N++ IR +P+ +S +    L R +++ +++  T        E +  
Sbjct: 458 TLRGYGFNLDVLGYNSVVIRSVPSSVSGREAEALDR-VLEVLVEGRTEDG--SLGEKVWT 514

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC G+I++G  +   EM+RLL +     +   C HGRPTF  L + ++EK   R
Sbjct: 515 ALACKGAIKAGTCLAPEEMSRLLTDWLSCDDYHHCPHGRPTFTVLTVKEVEKKLKR 570


>gi|258515357|ref|YP_003191579.1| DNA mismatch repair protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779062|gb|ACV62956.1| DNA mismatch repair protein MutL [Desulfotomaculum acetoxidans DSM
           771]
          Length = 639

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/652 (30%), Positives = 303/652 (46%), Gaps = 74/652 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E   NQIAAGE++ERP+  +KEL+ENSLDA +S +E  I  GG     + DNG 
Sbjct: 3   KIIILDELTANQIAAGEVVERPASVVKELVENSLDAGASAIEINIYEGGLKSITVIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +A  RH TSK+  ++D +NI+T GFRGEALPSI +++ + L +R   + +G 
Sbjct: 63  GMSEEDAVLAFYRHATSKLASAEDLTNINTMGFRGEALPSIASIARVELKTRAQDSVSGI 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG K  SV      PGT V V DLF+  PARL  +++   E   I +++ R+A+A 
Sbjct: 123 RLEISGGKTLSVGSAGCPPGTSVTVSDLFYNTPARLKHMQTASAEAARINELVNRLAMAK 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF       N +   +   +G+  + ++ V G       + L E++  + + GYT  
Sbjct: 183 PEVSFRLRHNGRNVF---YAPGSGSLLDAVAAVYGIKIARELIPLEEENALLKIYGYTSR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ NRGN  Q  +FIN R V+   IL  I  AY   +P GRYP+ +L L I+P +VDVNV
Sbjct: 240 PSVNRGNRKQQTLFINHRLVKSSIILRAIEEAYRTILPPGRYPLTILALAINPGKVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HPAK  +R      I   I +SI++A+    +                            
Sbjct: 300 HPAKLEVRVEQENEIAELIKESIKRALQANSLIPELKITPAVKQKTLVGEPYQEKLNFTP 359

Query: 335 ----------------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
                                  VL +K ++S  ++N    +      + T   E   ++
Sbjct: 360 DKIAEAKLRDNPTQENNSHYKRPVLEEKKLASEAKENLETGNRLVQVNNQTGRAESNNIR 419

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                 +          +         + + +      AQ+   YI++    GL I+DQH
Sbjct: 420 NPAAGQDQAQIIVRQNTTVSEKAPVNKKNSSFPSLWPLAQLMPTYILASADKGLFIIDQH 479

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHER++FEK ++ F+  ++ SQ LL P  ++L   E  LI++H   L  +G   E FG 
Sbjct: 480 AAHERILFEKYQKQFSEGQVVSQMLLIPITLELNFREEELIIKHIILLKEIGFIIEEFGK 539

Query: 493 NAIAIREIPAILSKKNIPQLLRDIID----------EIIDSSTTYTLQDRIENILATMAC 542
               +R +P  +S      L  DI+D           ++ +                   
Sbjct: 540 GTFLLRGVPGNVSPGQEKDLFFDILDFSEDSLTGREVLVQNMAAAMACKAAVK------- 592

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                +G K+    M  LL ++ +  +   C HGRPT I L L ++   F R
Sbjct: 593 -----AGEKLTPSAMLALLEQLAETESPYTCPHGRPTLIHLSLEELAVKFKR 639


>gi|78044214|ref|YP_360228.1| DNA mismatch repair protein HexB [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123756763|sp|Q3ACA6|MUTL_CARHZ RecName: Full=DNA mismatch repair protein mutL
 gi|77996329|gb|ABB15228.1| DNA mismatch repair protein HexB [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 578

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 185/595 (31%), Positives = 294/595 (49%), Gaps = 21/595 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L +++I +IAAGE++ERP   +KEL+ENSLDA++  +   I  GG     + D+G 
Sbjct: 3   KIKRLPDEVIKKIAAGEVVERPYSVVKELVENSLDAKAQNINVYIEEGGLGKIVVEDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P A+ RH TSKI+  DD   + +FGFRGEAL SI AVS +++ SR    N G 
Sbjct: 63  GIPPEELPDALLRHTTSKIASFDDLYYLESFGFRGEALYSIAAVSKISIKSRVRGENNGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     ++ ++  V M  GT+V V DLFF  PAR  FLKS Q E  LI   I +MAI Y
Sbjct: 123 ELIAHAGEVINLTEVGMAYGTVVTVSDLFFNTPARKKFLKSGQTEAGLIRQFIEKMAILY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F+         K+   +        +++  G +  N  +   +      ++G   +
Sbjct: 183 PGVKFSLFIDGK---KIYSSAGIQEQLGLLARFWGLEKGNLLMLEEKLGEGFFIKGGIAL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   + +       +N R V+   +   I  AY   +P G  P+V L + +    VDVNV
Sbjct: 240 PPAGKPHRKLQVFAVNKRLVKSGILTKAIDDAYESLLPTGLKPLVFLEVVVPGTWVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  ++F +   I   +   I+  +     S+    S    ++   ++     +  +A
Sbjct: 300 HPQKLEVKFMDEQKIYLDVRTIIRNKLVNAKSSSLKSFSPARETNTKSEDNDYWQVTYFA 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              +   +KL  +E+  ST+D L     T+S + D  +E             Q    YII
Sbjct: 360 EEFSGNSDKLLEKEDIFSTSDNL-----TFSLNKDFAKE------LNFQVIGQFSLKYII 408

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  D L+I+DQHAAHER+++EK +         SQ L  P  I       A + E+ ++
Sbjct: 409 VEKNDKLLIIDQHAAHERILYEKYQTKL--NPFYSQVLTFPVRIKASPELEAFLQENYQN 466

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
              +G+  E FGP    +REIP    + NI  +L + + EI++     + +++   +   
Sbjct: 467 FLEIGLHIEPFGPGEYLVREIPEDFPQNNIANVLEEYLYEIMEQKEQVSFREKALKLF-- 524

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  +++ G K+   EM  L++E+ K      C HGRPT  +L L++I K F R
Sbjct: 525 -ACKNAVKFGEKLTYSEMTNLVKELFKTNYPLSCPHGRPTIYELSLTEINKKFFR 578


>gi|225873493|ref|YP_002754952.1| DNA mismatch repair protein MutL [Acidobacterium capsulatum ATCC
           51196]
 gi|254766152|sp|C1F876|MUTL_ACIC5 RecName: Full=DNA mismatch repair protein mutL
 gi|225794076|gb|ACO34166.1| DNA mismatch repair protein MutL [Acidobacterium capsulatum ATCC
           51196]
          Length = 665

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 190/667 (28%), Positives = 322/667 (48%), Gaps = 79/667 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS+++ NQIAAGE+++RP+  +KEL+EN++DAE++R+   +  GG+   ++TDNG 
Sbjct: 3   RIRVLSDQVANQIAAGEVVDRPASVVKELLENAIDAEATRIRVEVEAGGRKLIRVTDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSKI  SDD   I T GFRGEALPSI ++S L +++R     TG 
Sbjct: 63  GMMRDDAMLAFERHATSKIRSSDDLLTIATLGFRGEALPSIASISRLEMITRAQGEETGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I+G K+  V      PGT   +RDLF+  PAR  FLK+E  E + ++ ++   A+A+
Sbjct: 123 CIEIAGGKMLRVEDAGAPPGTSFTIRDLFYNTPARRKFLKAESTELSHVSALVTHYALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN---------- 229
           P   F      S  + +          ER+ Q+ G + +N  + +  +            
Sbjct: 183 PDKHFEL---HSATHALLNAPPVNEPSERVFQIFGAETLNQLIPMAAERPFDRAGLPEPP 239

Query: 230 --------------EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                          + ++G+   P   + N N  Y+FIN R V+D+ IL  I   Y   
Sbjct: 240 PWRRDQDYEPPDPGFLRVKGFISKPALQKLNRNSIYIFINRRLVRDRLILHAITEGYRNI 299

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           IP   +PV +L LE+ P +VDVNVHPAK+ +RFR  +++ +F+  SI+ A+ K     ++
Sbjct: 300 IPPTSFPVALLFLEMPPHEVDVNVHPAKTEVRFRQSSVLHDFLRDSIRNALMK--ARPAA 357

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATS---------------------LTNTQEKLFLQEN 374
                + +S    +   T  P   +                      L + ++ L     
Sbjct: 358 DFLAALSASEPVSSVLPTATPVQDSEVIPAGSEAAGEVAAFALTEPVLPSVEQPLPFARA 417

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA------------------------- 409
            ++   +  +     +    P     A     G                           
Sbjct: 418 EMTVPQVQGAAGSAPAPPAYPAVAGAAARVPGGNCGHDAGPEEIPPPGGEAGTLASLASL 477

Query: 410 --CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
               Q+ +++I++   +G  I+DQH AHER++FEK+ ++    ++  Q LL P ++DLL 
Sbjct: 478 KPLGQLRESFILAVNDEGFWIIDQHVAHERVLFEKILREREVERVHRQRLLMPLLLDLLP 537

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +     E  ++L R G +AE FGP+ IAI+  P  L    + ++L +++++    + + 
Sbjct: 538 HQMVRFAEIAQELERNGFEAEPFGPHTIAIKASPVGLEGARLERMLVEVLEQTGTGTQSE 597

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L+     I A++AC+ +I+    +    M  LL E+ +  + + C HGRP  ++    D
Sbjct: 598 NLETVRTRIAASIACHSAIKINTPLDPQRMEWLLAELARTAHPTSCPHGRPIALRYSWKD 657

Query: 588 IEKLFGR 594
           I++ F R
Sbjct: 658 IQRAFER 664


>gi|291459238|ref|ZP_06598628.1| DNA mismatch repair protein MutL [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418492|gb|EFE92211.1| DNA mismatch repair protein MutL [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 675

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 180/650 (27%), Positives = 295/650 (45%), Gaps = 61/650 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR LSE+ INQIAAGE+IERPS   KEL+EN++DA +S V   I  GG S  ++TDNG 
Sbjct: 28  KIRILSEETINQIAAGEVIERPSSIAKELLENAVDAGASAVSVEIRDGGISLLRVTDNGS 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+  A  RH TSKI D  D   I T GFRGEAL SI AVS   L+++ P +   +
Sbjct: 88  GIAKGEVRTAFLRHATSKIRDASDLGRIRTLGFRGEALASIAAVSKTELITKTPDSLLAS 147

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G    S+  +    GT V VR+LF+ +PAR  FLKS + E   + +++ R AIA+
Sbjct: 148 RYEIEGGVERSLSEIGAMDGTTVLVRELFYNVPARRKFLKSRKTEGARVQEIVEREAIAH 207

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--------NEI 231
           P ++F +      R+        G   + +  V G +     + L+             +
Sbjct: 208 PDIAFRYLQDGKQRFV---SFGKGAPLDAVYAVYGRELRGQLIPLSGSYLPSKETGRPAL 264

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            + G+ G P+ NR N +    F+N R V+   +   +       +   ++P  V++LE+D
Sbjct: 265 RISGFVGKPSTNRSNRSCELFFVNCRHVRSPLLTRALEDGCRAFLMQHKFPFAVVMLELD 324

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-QDNA 350
           P  VDVNVHP K  +RF +   I   +  +I++A+++  +       K+          A
Sbjct: 325 PAIVDVNVHPQKLEVRFSDGEGIYTAVFDAIERALHETEMIADGEPPKREDPEERGPSPA 384

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--- 407
           P+    +      +  +    +E+  +                  + E+ +   Q     
Sbjct: 385 PEPFERRRLEMTPSFSQGERGEESSSAPFKEKEGYRRAEDFVPGNIRENPSFSEQREQRE 444

Query: 408 -------------------------------------------IACAQIHQNYIISQTTD 424
                                                          Q+   Y + +  D
Sbjct: 445 EEEGEGEREGENAEEKSRSEALSGKQESLFSERFLSEKARTEQRIIGQLFDTYWLIEYGD 504

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            L ++DQHAAHE++ FE++ + F   K  SQ L  P ++ L   E  ++  +      LG
Sbjct: 505 KLFLIDQHAAHEKVNFERLMKRFREKKALSQYLSPPIVLTLSSREELILQRYLSYFRELG 564

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
            +    G    ++  +PA L +    +LL +++DE+ + S  +T +   + I A+M+C  
Sbjct: 565 YEISELGGRDYSVSAVPADLPRIGKKELLLELLDELCEESGRHTAESIYDRI-ASMSCKA 623

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++   ++   EM+ LL E+    N   C HGRPT + +  ++IE+ F R
Sbjct: 624 AVKGNMRLSFREMDALLSELMSLENPYACPHGRPTIVSISKTEIERKFKR 673


>gi|255655929|ref|ZP_05401338.1| DNA mismatch repair protein [Clostridium difficile QCD-23m63]
 gi|296450649|ref|ZP_06892402.1| DNA mismatch repair protein HexB [Clostridium difficile NAP08]
 gi|296879234|ref|ZP_06903229.1| DNA mismatch repair protein HexB [Clostridium difficile NAP07]
 gi|296260493|gb|EFH07335.1| DNA mismatch repair protein HexB [Clostridium difficile NAP08]
 gi|296429777|gb|EFH15629.1| DNA mismatch repair protein HexB [Clostridium difficile NAP07]
          Length = 654

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 182/658 (27%), Positives = 296/658 (44%), Gaps = 70/658 (10%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I  L +  IN+IAAGE++ERPS  +KELIENS+DA ++++   I  GGKS  +ITD
Sbjct: 1   MKNIINILDDLTINKIAAGEVVERPSSVVKELIENSIDAGANKISIDIIDGGKSLIKITD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+ S E+  +  RH TSKI   DD  ++++ GFRGEAL SI AVS L + ++     
Sbjct: 61  NGMGIPSSEVEKSFLRHATSKIKKIDDLYDLYSLGFRGEALASISAVSKLEMTTKTKDEI 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G +I + G KI S  P+    GT + +RD+FF  PAR  FLKS   ET  I+D+I ++A
Sbjct: 121 IGTKIYVEGGKIISKEPIGSTNGTTIIIRDIFFNTPARQKFLKSTHAETINISDLINKLA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           I  P + F ++              +G     I  + G++   N +++  K N   + GY
Sbjct: 181 IGNPNIQFKYTNNNKQMLN---TPGDGKLVNTIRSIYGKEITENIIDVEFKCNHFKMNGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G     R N N  +++IN R V+ K I+  I  +Y   IP+G++ V  L +E+DP  +D
Sbjct: 238 IGNNNIYRSNKNLQHIYINKRFVKSKIIIDAITESYKSIIPIGKHAVCFLNIEVDPSCID 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VN+HP K  I+F     +   +   ++  +    +           +        +    
Sbjct: 298 VNIHPNKLEIKFEKEQEVYIELRDFLKVKLIHSNLIGKYATYSDKKTQPRIAINSREKST 357

Query: 357 KYA-----------------------------------TSLTNTQEKLFLQENRLSTNDL 381
            Y                                        +  E L   E+ ++  + 
Sbjct: 358 DYKLRNDNLLESTPKNSNTTKSKDEVIEVVTLSSEKPINEFQSVSEVLNASEDEVNNINY 417

Query: 382 LPSDDPTYSEDNDP----------------VEESEATHYQLGIACAQIHQNYIISQTTDG 425
           L  D    +   +                 +++SE  +         ++   +I    + 
Sbjct: 418 LSEDSANDNIQEEFQVDGIRNEGNYYLGDSIKDSEEEYLCSSKRKFSLYGYSVIGVVFNT 477

Query: 426 LVIV----DQHAAHERLIFEKMRQDFNSTK-----ITSQTLLTPEIIDLLEGECALIMEH 476
            +I+      +   +    E++  +    K     I  Q LL P II++   +   I  +
Sbjct: 478 YIILSKNDSMYLLDQHAAHERILYERYMEKFYRQDINMQILLDPVIIEVSNVDMLQIENN 537

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E   + G + E FG N I +R +P I       + +  IID I + ++ Y L+      
Sbjct: 538 LELFMKFGFELEIFGNNHIMVRCVPTIFGVPETEKFILQIIDNIEEITSNYDLKGER--- 594

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            A+MAC  +I++  K+  IE+  LL ++EK  N   C HGRP  +++  ++IEK+F R
Sbjct: 595 FASMACRSAIKANDKIYDIEIKSLLEQLEKCENPFTCPHGRPIMVEISKTEIEKMFKR 652


>gi|268323523|emb|CBH37111.1| DNA mismatch repair protein [uncultured archaeon]
          Length = 573

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 181/602 (30%), Positives = 296/602 (49%), Gaps = 38/602 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I  L E+ I QIAAGE+++RP+  +KELIENS+DA S+ +   +  GG  + +ITD+
Sbjct: 1   MKSIFVLEERAIGQIAAGEVVDRPASVVKELIENSIDAGSTHIVVGVGNGGSDYIRITDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  E+  +A ++H TSKI   +D  ++HT GFRGEALPSI AVS + L +R    + 
Sbjct: 61  GSGICEEDTEVAFEKHATSKIKGIEDLVSLHTLGFRGEALPSIAAVSRIELSTRHRSEDF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G+ + + G  +   R    + GT +EV+ LF+ +PAR+  +KS+  E   I DV    A+
Sbjct: 121 GSFLNLEGGVLKGRRRTTRSVGTTLEVKSLFYNLPARIGTIKSKSTELRHIVDVCINYAV 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS----NEITL 233
             P + F       N         NG   + I    G    N+ +EL E        + +
Sbjct: 181 INPAIKFELFHDDKNIISTL---GNGKMLDAIVNTYGSGVANDLIELKEPDSSTSFNVRI 237

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY   P  + G     + ++N R V+++ +   I+  Y   +P   YP  VL L IDP 
Sbjct: 238 NGYISKPAASYGTKKHLFTYVNNRFVRNELVERAIKRGYMSLLPKYAYPFAVLALSIDPG 297

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           +++VN+HP K  IRF +   + +FI  ++   + +  +    V  +K   +         
Sbjct: 298 EINVNIHPKKHEIRFYHSDDVFHFIAGAVSTTLRQADLIPEVVEREKDAVAAL------- 350

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
                  S T  QEK      + S +  + +D              E       +   Q+
Sbjct: 351 ------DSFTLPQEKKAPVSAQTSFHADMDAD-----------VPDEGRLDICSVPLYQV 393

Query: 414 HQNYIISQTT-DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
             +YII+Q+  D ++++DQHAA ER  FE++ + +   +I  QTLL P + +L   +   
Sbjct: 394 LDSYIIAQSEADDVIMIDQHAAAERANFERLIERY-GHRIDKQTLLRPYMPELSPHQFYR 452

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           I E++E L  +G   ER G ++  IR IP +         + +++  +++   +   ++R
Sbjct: 453 IRENEEALRDMGFDIERLGDDSYIIRAIPVVFHGMIGEDEITEVMVRLVE--ESGKREER 510

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           I+ + +T AC  SI++G K+    M  ++  +        C HGRPT I+L   +IEK F
Sbjct: 511 IKVLFSTAACKASIKAGEKLSYDSMRAIVAGLRNAKIPFTCPHGRPTMIRLTKKEIEKRF 570

Query: 593 GR 594
            R
Sbjct: 571 KR 572


>gi|260171998|ref|ZP_05758410.1| DNA mismatch repair protein mutL [Bacteroides sp. D2]
 gi|315920311|ref|ZP_07916551.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694186|gb|EFS31021.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 633

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 162/634 (25%), Positives = 293/634 (46%), Gaps = 48/634 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S   ++ + G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSQVESQEAISCSKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + ++  +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPV----SQLRQRILAIFGKKLNQQLLNIDVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPAGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F +  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEEKISSEPPKVH 360

Query: 358 YATSLTN------------------TQEKLF------LQENRLSTNDLLPSDDPTYSEDN 393
           Y T                        E L+       + N       +  +D +   + 
Sbjct: 361 YNTDYNPFKVSAGGGGSGSYSRSKVEWEDLYGGLTKASKMNNPQPEPEMDWEDSSIGGEP 420

Query: 394 DPVEE--------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
             VEE              +     + G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 AFVEEKIETVTSAASSTLYANEPVMEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           IP+ +   N  +L+R+++   ++       ++    +  T+A   +I  G+ + + EM  
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGN-DVKEEIQNILAITLARAAAIVYGQVLSNEEMVS 599

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 600 LVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|288800861|ref|ZP_06406318.1| DNA mismatch repair protein MutL [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332322|gb|EFC70803.1| DNA mismatch repair protein MutL [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 604

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 171/604 (28%), Positives = 289/604 (47%), Gaps = 17/604 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+ENS+DAE++ +  ++   G++  Q+ D+G G
Sbjct: 5   IQLLPDTVANQIAAGEVIQRPASVIKELVENSIDAEATTINVLVVDAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   +HT GFRGEAL SI AVS + L +R    + G  
Sbjct: 65  MSDTDARLSFERHATSKIRSADDLFQLHTMGFRGEALASIAAVSQVQLKTRQKHEDLGTV 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ++G K  S  P     GT   + +LF+ +PAR  FLKS   E N I    +R+A+ YP
Sbjct: 125 IHVAGSKYISQEPCTCAVGTNFLIENLFYNVPARRKFLKSNTTELNNIVTAFQRIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  +    +      G   +RI  + G+    + + L  ++    + G+ G P
Sbjct: 185 HITFTLHSNGNELISLRA----GTLRQRIVDIFGKRINQDLLSLETETTFCKIYGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    Q Y F+NGR ++  +    + +A    +P G      +  ++   ++DVN+H
Sbjct: 241 ESAKKKGAQQYFFVNGRYMKHAYFHKAVASALERLVPTGEQVPYFIYFDVPTEEIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   ++  +++A+       S       +  I  F  + +       
Sbjct: 301 PTKTEIKFENEKAIWQILMAIVREAVGLYNDVPSIDFDNEGRPDIPVFDPNASISVPKVD 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDL--------LPSDDPTYSEDNDPVEESEATHYQLGIA 409
           Y  +    +E       R  TN             +       ++P+ ESE+   +   +
Sbjct: 361 YNPNYNPFKEVEQSTPRRDVTNWETLYEGLGNEIDEPQNLFTPDEPISESESLIAEKSPS 420

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q    YI++    GL+I+DQH AH R+++E   +  N    +SQ +L PE++ +    
Sbjct: 421 HYQYKGKYIMTSVKSGLMIIDQHRAHLRILYENFIEKLNQRVNSSQKVLFPEMVQIPAAS 480

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             L  +   ++ R+G +    G  + A++ +PA L   N+  L+ D+ID          L
Sbjct: 481 IELFNKIIPEIERIGFEISNLGGGSYALQSVPADLQGLNMVDLIHDMIDNASVQGVNSAL 540

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            D    +  TMA   +I  G+ + ++EM+ L+  +    N S    G+     L  SDI 
Sbjct: 541 DDIHHALALTMARSAAIPYGQVLSNVEMDDLITSLFATTNISYTPTGKIILSILNQSDIS 600

Query: 590 KLFG 593
           KLFG
Sbjct: 601 KLFG 604


>gi|212690539|ref|ZP_03298667.1| hypothetical protein BACDOR_00021 [Bacteroides dorei DSM 17855]
 gi|237725277|ref|ZP_04555758.1| DNA mismatch repair protein mutL [Bacteroides sp. D4]
 gi|212666888|gb|EEB27460.1| hypothetical protein BACDOR_00021 [Bacteroides dorei DSM 17855]
 gi|229436543|gb|EEO46620.1| DNA mismatch repair protein mutL [Bacteroides dorei 5_1_36/D4]
          Length = 622

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/624 (26%), Positives = 294/624 (47%), Gaps = 39/624 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  IKEL+EN++DA +  V+ ++   GK+  Q+ D+G G
Sbjct: 5   IRLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGAQHVDVLVVDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   +HT GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALHTMGFRGEALASIAAVAQVELRTRMEGEELGTM 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG K+     V+   G+   V++LFF +PAR  FLKS Q E + I     R+ +  P
Sbjct: 125 LTISGSKVEGQEAVSCPKGSSFCVKNLFFNVPARRKFLKSNQTELSNILTEFERIVLVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSFT     +  + +          +RI  V G+      + L+  +  + + G+ G P
Sbjct: 185 EVSFTLHHNGAELFNLPAL----QLRQRIMGVFGKKINQELLSLDVDTTMVRVSGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + Y F+NGR ++  +    I  AY + +P+G      +  E++P  +DVN+H
Sbjct: 241 ETARKKGARQYFFVNGRYMRHPYFHKAIMDAYEQLVPVGEQVSYFIYFEVNPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------KKMI 342
           P K+ I+F N   I   +  ++++ + K     S                      +   
Sbjct: 301 PTKTEIKFENEQAIWQILAAAVKETLGKFNAVPSIDFDTEGMPDIPAFDASPYTGIQPPK 360

Query: 343 SSFHQDNAP---KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           ++++ D  P       P   +  +   E+L+    R +++     D+  Y  +     E 
Sbjct: 361 TTYNPDYNPFNVSAAPPSSYSKPSKDWEQLYAGLERHASSQNFHPDENDYRAEETSPAEE 420

Query: 400 EATHYQL---------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
               Y                Q    +I++    GL+I+DQ  AH R++++K     +  
Sbjct: 421 NPGLYDHVEDSSVSEKSGQHYQFKGRFILTSVKSGLMIIDQQRAHIRILYDKYIDQISRR 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           +  SQ +L P+I+     E A++ E  EDL  LG +    G  + AI  +PA +   N  
Sbjct: 481 QGISQGMLFPDIVQFPLSEVAILQEIMEDLSFLGFELTDLGGGSYAINGVPAGIEGLNPI 540

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            L+++++   ++      +++ +++ILA T+A   +I  G+ + + EM  L+  +     
Sbjct: 541 DLIQNMVHTAMEKGG--KVKEEVQSILALTLAKATAIVPGQVLTNEEMTGLVDGLFAVAT 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFG 593
            +    G+     +   D+EKLF 
Sbjct: 599 PNYTPDGKTVLSVINEDDLEKLFK 622


>gi|147669646|ref|YP_001214464.1| DNA mismatch repair protein MutL [Dehalococcoides sp. BAV1]
 gi|146270594|gb|ABQ17586.1| DNA mismatch repair protein MutL [Dehalococcoides sp. BAV1]
          Length = 566

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/599 (30%), Positives = 318/599 (53%), Gaps = 39/599 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  I +IAAGE+IERP+  +KEL+ENSLDAE+ RV+ VI  GG  + +++D+G
Sbjct: 1   MPIKLLDKATIARIAAGEVIERPASVVKELLENSLDAEAKRVDIVIREGGIGYIEVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+TS E+ +A +RH TSK+S  +D   I + GFRGEALPSI AV+ L +++      +G
Sbjct: 61  CGITSSEVLLAFERHATSKLSSFEDIYAIASLGFRGEALPSIAAVADLEMLTAVRTEESG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +++SG ++     +A   GT +++  LF  +PARL FLK+ Q E + +T+V+   A+A
Sbjct: 121 TYLSLSGGEMLKHTRMARAAGTSIKLSRLFSRVPARLKFLKTPQHEASKVTEVVVSYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE---ITLQG 235
           YP+V F+ +    N         NG   + + +V G D  +  ++L   +     I + G
Sbjct: 181 YPEVKFSLNVDGRNTLN---TPGNGKLRDAVLEVYGSDAASKMLDLENDTYRSSAINISG 237

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P  +R N N  + F+N R +Q + +   +  AY+  +  GRYP+ V+ + +    V
Sbjct: 238 LVSPPEVSRSNRNSLHFFVNRRLIQSRALQRAVEQAYSGLLTAGRYPMGVINIRLSGALV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HP K+ ++F + + +   + ++++  + +                 H + A   + 
Sbjct: 298 DVNIHPTKAEVKFSDESAVFTSVQRAVRSVLVE------------KPPLLHVEEARPVYQ 345

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P+        QE ++ +  +L   +         S  +  ++ ++ +   L     Q+  
Sbjct: 346 PE-----VGRQEHIWAEVQKLPNANT--------SYISPVIQSAKTSSLLLLRLVGQVGG 392

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y++++  DGL I+DQHAAHER+ +E++  +  S +   Q+LL P I++L   + A+I +
Sbjct: 393 LYLLAEGPDGLYIIDQHAAHERIRYEEIAAETCSAR-ACQSLLEPFILELNPVQEAMIEK 451

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
              +L  +G + E FG     ++ IPA L       LL ++ D   D+       +  E 
Sbjct: 452 CKSELELMGFEMEEFGRRVYRVKSIPAGLKAHQAKALLAELADNPKDAPA-----EIKER 506

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++  MAC+ ++R+G+ +  +EM  LL ++EK      C HGRPT +K+  S +EK F R
Sbjct: 507 LIRLMACHTAVRAGQVLTEVEMRELLLKLEKTGIPGHCPHGRPTIVKIDFSQLEKDFKR 565


>gi|265754209|ref|ZP_06089398.1| DNA mismatch repair protein MutL [Bacteroides sp. 3_1_33FAA]
 gi|263234918|gb|EEZ20473.1| DNA mismatch repair protein MutL [Bacteroides sp. 3_1_33FAA]
          Length = 622

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/624 (26%), Positives = 294/624 (47%), Gaps = 39/624 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  IKEL+EN++DA +  V+ ++   GK+  Q+ D+G G
Sbjct: 5   IRLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGAQHVDVLVVDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   +HT GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALHTMGFRGEALASIAAVAQVELRTRMEGEELGTM 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG K+     V+   G+   V++LFF +PAR  FLKS Q E + I     R+ +  P
Sbjct: 125 LTISGSKVEGQEAVSCPEGSSFCVKNLFFNVPARRKFLKSNQTELSNILTEFERIVLVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSFT     +  + +          +RI  V G+      + L+  +  + + G+ G P
Sbjct: 185 EVSFTLHHNGAELFNLPAL----QLRQRIMGVFGKKINQELLSLDVDTTMVRVSGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + Y F+NGR ++  +    I  AY + +P+G      +  E++P  +DVN+H
Sbjct: 241 ETARKKGARQYFFVNGRYMRHPYFHKAIMDAYEQLVPVGEQVSYFIYFEVNPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------KKMI 342
           P K+ I+F N   I   +  ++++ + K     S                      +   
Sbjct: 301 PTKTEIKFENEQAIWQILAAAVKETLGKFNAVPSIDFDTEGMPDIPAFDASPYTGIQPPK 360

Query: 343 SSFHQDNAP---KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           ++++ D  P       P   +  +   E+L+    R +++     D+  Y  +     E 
Sbjct: 361 TTYNPDYNPFNVSAAPPSSYSKPSKDWEQLYAGLERHASSQNFHPDENDYRAEETSPAEE 420

Query: 400 EATHYQL---------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
               Y                Q    +I++    GL+I+DQ  AH R++++K     +  
Sbjct: 421 NPGLYDHVEDSSVSEKSGQHYQFKGRFILTSVKSGLMIIDQQRAHIRILYDKYIDQISRR 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           +  SQ +L P+I+     E A++ E  EDL  LG +    G  + AI  +PA +   N  
Sbjct: 481 QGISQGMLFPDIVQFPLSEVAILQEIMEDLSFLGFELTDLGGGSYAINGVPAGIEGLNPI 540

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            L+++++   ++      +++ +++ILA T+A   +I  G+ + + EM  L+  +     
Sbjct: 541 DLIQNMVHTAMEKGG--KVKEEVQSILALTLAKATAIVPGQVLTNEEMTGLVDGLFAVAT 598

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFG 593
            +    G+     +   D+EKLF 
Sbjct: 599 PNYTPDGKTVLSVINEDDLEKLFK 622


>gi|288803871|ref|ZP_06409296.1| DNA mismatch repair protein MutL [Prevotella melaninogenica D18]
 gi|288333636|gb|EFC72086.1| DNA mismatch repair protein MutL [Prevotella melaninogenica D18]
          Length = 630

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 166/630 (26%), Positives = 309/630 (49%), Gaps = 46/630 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA ++ ++ ++   G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGATHIDVLVVDAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  ++ T GFRGEAL SI AV+ + L +R    + G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFSLRTMGFRGEALASIAAVAQIELKTRMESEDLGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G +     P +   G+   V +LFF +PAR  FLKS   E N I     R+ + YP
Sbjct: 125 LSIAGSRFMGQEPCSCPVGSNFLVENLFFNVPARRKFLKSNTTELNNIITAFERIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SFT  +  +  + +   S    + +RI +V G+    + + ++  ++   + G+ G P
Sbjct: 185 QISFTLHSNGTELFSLRACS----YRQRIVEVFGKRLNQDLLPIDVDTSLCHIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R  A   Y F+N R ++  +    + TA+   IP G      L  ++    +DVN+H
Sbjct: 241 ESARKKAPHQYFFVNDRYMKHPYFHKAVITAFDRLIPQGEQVPYFLYFDVPAENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---------------- 344
           P K+ I+F N   I   ++ ++++A+ +     +     +                    
Sbjct: 301 PTKTEIKFENEQAIWQILLAAVKEAVGRFNDIPAIDFDTEGKPDIPVFNPNVGMSAPKVD 360

Query: 345 FHQDNAPKTHLPKYA-TSLTNTQEKLFL--------QENRLSTNDLLPSDDPTYSEDNDP 395
           F+    P     + A  S+ +  E+L+         ++++L           + S  ND 
Sbjct: 361 FNPAYNPFKQTSQPAKPSVPDGWEELYADLGTGGEIRQSKLVEQREDEMISSSLSSVNDT 420

Query: 396 VEE------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           VEE            +E+       +  Q    YI++    GL+I+DQH AH R+++E+ 
Sbjct: 421 VEEGTIIPSAATQSAAESLIEDKAPSHYQYKGCYIMTAVKSGLMIIDQHRAHIRILYEEY 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
            +  +  K+ SQ +L PE++     +  ++ +   ++  +G + +  G  + A+  +PA 
Sbjct: 481 LRQLSEHKVHSQKVLFPEMVQFSVSDQVVLDQILPEMAEMGFQLDSLGGGSYAVNGVPAG 540

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLR 562
           +   N+  L+ D++   ++S T+   ++ I+  LA ++A   +I  G+ + S+EM+ ++ 
Sbjct: 541 IEGLNVVALINDMVASAMESGTS--AKEEIDQALALSLARNAAIPQGQVLSSMEMDNIVN 598

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           E+    N +    G P    +K  DIE LF
Sbjct: 599 ELFACSNVNYTPSGEPVIAIMKQQDIEHLF 628


>gi|229824007|ref|ZP_04450076.1| hypothetical protein GCWU000282_01311 [Catonella morbi ATCC 51271]
 gi|229786361|gb|EEP22475.1| hypothetical protein GCWU000282_01311 [Catonella morbi ATCC 51271]
          Length = 657

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/649 (25%), Positives = 294/649 (45%), Gaps = 61/649 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+++ E + NQIAAGE++ERP+  +KEL+EN++DA +  +   +   G    ++ D+G 
Sbjct: 3   KIQQMPEALANQIAAGEVVERPASVVKELVENAIDAGAQTIRVELREAGIQQVKVIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E++  A   H TSK+ D  D   I + GFRGEAL SIG+V+ + + S       G 
Sbjct: 63  GMDAEDLAKAFLPHATSKLYDVHDLFQIKSLGFRGEALASIGSVAKVRVESMQAGAEAGH 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I+G ++ +    +   GT + V  LF+  PARL  L S + E     + I+ +A+AY
Sbjct: 123 YIEIAGSQVQAQGMTSARKGTTLTVDSLFYNTPARLKHLSSLKTELKHSLNFIQDIAMAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F         ++       G+  + I+ V         + L  ++ +  ++GY   
Sbjct: 183 PDIRFHLVNDGQTIFQ---SFGTGDLRQTIANVYQPAMARQLIALEAENLDFKIKGYISP 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + +  +  INGR V+   +   +  AY   + +GRYP+ V+ +E+DPR VDVNV
Sbjct: 240 PQLTRTSKHYIHWMINGRAVRSYALTELLLRAYGRQLMIGRYPLAVIAIELDPRLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS-FHQDNAPKTHLP-- 356
           HP K  +R    + +   + Q++ +++       ++ + +   S  FHQ        P  
Sbjct: 300 HPTKQTVRLSKESELGQLLTQAVVESLASLNPVPNAQVQELAGSRLFHQPEQVSPQGPAA 359

Query: 357 ------------------------------------------KYATSLTNTQEKLFLQEN 374
                                                     + A SL    +   +++ 
Sbjct: 360 NQVMPLDLDGKGKEPTFDSAYEEDDDLRTSQASQPAQSAPVSQVAESLAPDWQDRQVEQA 419

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEAT---------HYQLGIACAQIHQNYIISQTTDG 425
               +D      P  +   +  +E++A           +       QIH  Y+I+++ +G
Sbjct: 420 SKFEDDAPSQSQPIQATSEESNKETQAQPSGSQDLRPSFGHLRYVGQIHGTYLIAESPEG 479

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
             ++DQHAA ER+ +E   +    TK T QTLL P +      E A + +    L +LGI
Sbjct: 480 FYLIDQHAAQERIRYEAFMKQKMDTK-TQQTLLLPYLFHFSPAELAGLDQVLPRLAQLGI 538

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FGP    +   P  L    + Q +RD+ + ++      ++    E  L   +C G+
Sbjct: 539 VLEAFGPKTYQLASYPTWLEAHEVEQTVRDLTERLVKQPD-LSINQIKEAALIMQSCRGA 597

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I++   +   + + L++ ++   +   C HGRP F+++    +EKLF R
Sbjct: 598 IKANHYLDDSQASYLIQALDGLDDPFHCPHGRPVFVQITDKTLEKLFKR 646


>gi|282878154|ref|ZP_06286951.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           buccalis ATCC 35310]
 gi|281299732|gb|EFA92104.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           buccalis ATCC 35310]
          Length = 605

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 151/613 (24%), Positives = 292/613 (47%), Gaps = 31/613 (5%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   G++  Q+ D
Sbjct: 1   MKDVIQLLPDIVANQIAAGEVIQRPASVIKELVENAVDADAKEINILVEDAGRTSIQVID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G GM+  +  ++ +RH TSKI   DD   + T GFRGEAL SI AV+ + L +R  ++ 
Sbjct: 61  DGKGMSGTDARLSFERHATSKIRKADDLFALQTMGFRGEALASIAAVAQIELKTRREEDE 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  ++I+G K +   P +   G+   V +LF+ +PAR  FLKS   E N I     R+A
Sbjct: 121 LGTHLSIAGSKFTGQEPCSCPVGSNFMVANLFYNVPARRRFLKSNTTELNHIISAFERIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +  P+++FT  +  S  + +      G   +RI  + G+    + + L  +++   L G+
Sbjct: 181 LVNPQLAFTLYSNGSELFNLRS----GGLKQRIVDIFGKRINQDLLPLGVETSMCKLSGF 236

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G P  ++      Y F+N R ++  +    +  A+   +P G      +  E+  + +D
Sbjct: 237 VGKPESSKKKGAHQYFFVNNRYMRHPYFHKAVMNAFERLVPQGEQVPYFIYFEVKAQDID 296

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VN+HP K+ I+F N   I   +  ++++A+       S     +                
Sbjct: 297 VNIHPTKTEIKFENEQAIFQILFAAVREAVGLFNDVPSIEFDTQGQPDIPVYTPGNDGAV 356

Query: 344 ----SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
               +++    P       +    +  E+L+   ++  T   +   +    E +D     
Sbjct: 357 VPKVNYNPQYNPFKGGESASKPSADHWEQLYDSISQPPTMPNVFDQNANNGEGSDDELVE 416

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           + +         Q    YI++    GL+++DQH AH R+++E+  Q   + K   Q +L 
Sbjct: 417 DKSPIHY-----QYKGQYIMTAVKSGLMMIDQHRAHVRVLYERYLQQIKNQKAYPQKMLF 471

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           PE+I+    E     +   +   +G +    G +  AI+ +P+ +   +  QL+ D++  
Sbjct: 472 PELIEFSPSEAMNFAKLKPEFVAMGFEFTDMGNHDYAIQAVPSGIEGLDAVQLIHDMLVS 531

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
             +  ++  +++    +  ++A   ++ +G+ + + EM  L+  + +  N +    G+  
Sbjct: 532 AKEKDSS-AVEEVHRALALSLARSAALPTGQVLNNDEMENLVNSLFRCQNVNYTPDGKSI 590

Query: 580 FIKLKLSDIEKLF 592
              L+ S+IE+LF
Sbjct: 591 LHILQQSEIERLF 603


>gi|269123804|ref|YP_003306381.1| DNA mismatch repair protein MutL [Streptobacillus moniliformis DSM
           12112]
 gi|268315130|gb|ACZ01504.1| DNA mismatch repair protein MutL [Streptobacillus moniliformis DSM
           12112]
          Length = 606

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/612 (29%), Positives = 309/612 (50%), Gaps = 37/612 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I N IAAGE++E P+  IKEL+ENSLDAE+S ++  +  GG  + +I+DNG G
Sbjct: 10  IKILDDSISNIIAAGEVVENPASMIKELLENSLDAEASSIQIEVLNGGI-YVKISDNGKG 68

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E++ ++++RH TSKIS  +D  N+ T+GFRGEAL SI AVS +++ S+      G  
Sbjct: 69  MSREDVILSIERHATSKISTKEDIFNLQTYGFRGEALASIAAVSKISISSKTKDEKIGTI 128

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +      +          GT +E+RDLF+  PAR  FL+ E  E + I D++ + A+A P
Sbjct: 129 VNAYAGVVRKYENFTRTTGTEIEIRDLFYNTPARKKFLRKESTEYSKIKDIVLKEALANP 188

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ T         K    +T       I ++ G++ + N  +           GY G  
Sbjct: 189 NVAITLYIDGKATLK----TTGNGMENTIFELFGKNVLKNLEKFEY--------GYLGNV 236

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R +    Y ++NGR V+   +   +  AY   +  G+YP V+L+ +++P+++DVNVH
Sbjct: 237 EILRSSKEYIYTYVNGRYVKSNLLDRAVIDAYYTKLMKGKYPFVILMYDVNPKEIDVNVH 296

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  I+F +  I+ N I +SI     +    T         +    DN    ++P    
Sbjct: 297 PSKKMIKFSDEKIVYNDIKRSIDNFFYEFDRRTWQPTLIPKTNEVVVDNTETEYIPINIF 356

Query: 361 SLTNTQEKL------FLQENRLSTNDLLPSDDPTYSEDNDPVE------------ESEAT 402
           S    +E++      F +E  L   +     +  + E+ + ++            E +  
Sbjct: 357 SKDEVKEEVIPETLTFKEEKDLEVREPKLIYENPFYEEEEEIKVENKVEYLKPFFEKKEG 416

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
             +      QI   YI+    + L I DQH  HERL++E++   F    I SQ LL PE+
Sbjct: 417 EVKYYEVLGQIFDTYILVNRDNNLEIYDQHIIHERLLYEELMSSFEKKNIGSQILLLPEL 476

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ID+   +  +I  + +   +LG + +    N IA+R +P    +++I  +L +I+   +D
Sbjct: 477 IDVSPVDKDIIFNNMDTFEKLGFEIDEISNNQIALRAVPNFNFRESIKNILENIL---VD 533

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             +   + D  E I+ +M+C G+I++G+K+   EM  ++R + +      C HGRP   K
Sbjct: 534 LKSKNKVGDIREKIIISMSCRGAIKAGQKLNMQEMQNMVRRLHEVGK-YTCPHGRPIISK 592

Query: 583 LKLSDIEKLFGR 594
           +   D++K+FGR
Sbjct: 593 ISKYDLDKMFGR 604


>gi|320105858|ref|YP_004181448.1| DNA mismatch repair protein MutL [Terriglobus saanensis SP1PR4]
 gi|319924379|gb|ADV81454.1| DNA mismatch repair protein MutL [Terriglobus saanensis SP1PR4]
          Length = 655

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/652 (28%), Positives = 308/652 (47%), Gaps = 59/652 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS+++ NQIAAGE++ERP+  +KEL+EN++DA ++R+   +  GG+   +I DNG 
Sbjct: 3   RIRVLSDQVANQIAAGEVVERPASVVKELLENAVDAGATRIRVDVEAGGRKLIRIEDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A +RH TSK+  S+D  +I T GFRGEALPSI +V+ + + +R  ++  G 
Sbjct: 63  GMVRDDAMLAFERHATSKLRNSEDLLSISTLGFRGEALPSIASVARVEMETRAAEDEVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I ISG  +  V  +    GT + +RDLFF  PAR  F+KSE  E + +  ++   A+A+
Sbjct: 123 RIEISGGNMLRVEDIGRPVGTTLAIRDLFFNTPARKKFMKSESTELSHVAALVTHYALAH 182

Query: 180 PKVSFTFSTI----------KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           P+  F   T           +    ++            I  V   DF    V       
Sbjct: 183 PEKHFELHTTTHALLVAPAVRDAGERLFQIFGAETHKAMIPAVAEVDFSRVGVPEPPPWK 242

Query: 230 -----------EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
                       + + G+   P   + N N  Y F+NGR V+DK IL  +  AY   IP 
Sbjct: 243 RGEDYEAPAPGFLRVHGFVSKPELQKLNRNSMYFFVNGRQVRDKLILHAMGEAYRNVIPP 302

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
             +PVV+L LE+ P++VDVNVHPAK+ +RFR    + +F+  +++ A+ K     S  ++
Sbjct: 303 TSFPVVLLFLEMPPQEVDVNVHPAKTEVRFRQSAFVHDFVRDTVRNAVMKARPVASFAMA 362

Query: 339 KKMISSFHQD-----NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL------------ 381
            +      +       A       ++ +L    ++   Q  R+   D             
Sbjct: 363 LETAPRASESLLLDVGAMSVGTVPWSEALPVNGDRQISQSERIRAGDAEEFSLREIQLPA 422

Query: 382 -------------------LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
                              L ++                          Q+ +++I++  
Sbjct: 423 MPVRLDFSASPAISPSIAGLNAEQVAEEMRAAEETPVTLNALANLRPLGQLKESFILAVN 482

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            +GL IVDQH AHER++FEK+ +      +  Q LL P +IDLL  + A      E+L R
Sbjct: 483 EEGLWIVDQHVAHERVLFEKILKARQVEHVQRQRLLMPLLIDLLPEQMAAFAVMAEELER 542

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
            G +AE FGP  +A++  P  L  +++   L +++            + R   + A++AC
Sbjct: 543 NGFEAEPFGPRTLAVKAAPVGLEGRHLELTLGEVLQVDERERQAENTEARRMRVAASIAC 602

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +I+    ++  ++  LL E+ K  N   C HGRP  ++    DI++ F R
Sbjct: 603 HAAIKVNMPLEPEKIAWLLEELGKTENPMSCPHGRPIALRYSHKDIQRAFQR 654


>gi|325268739|ref|ZP_08135367.1| DNA mismatch repair protein MutL [Prevotella multiformis DSM 16608]
 gi|324988907|gb|EGC20862.1| DNA mismatch repair protein MutL [Prevotella multiformis DSM 16608]
          Length = 623

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 166/627 (26%), Positives = 296/627 (47%), Gaps = 43/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  +KEL+EN++DA +  +  ++A  G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVVKELVENAIDAGAQHINVLVADAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  ++HT GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFSLHTMGFRGEALASIAAVAQIELKTRMEAEELGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G + +   P +   G+   V +LFF +PAR  FLKS   E N I     R+ +  P
Sbjct: 125 LSIAGSRFTGQEPCSCPAGSNFLVENLFFNVPARRKFLKSNTTELNNIITAFERIVLVCP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT  +  +  + +       NF +RI +V G+    + + ++  ++   + G+ G P
Sbjct: 185 QIAFTLHSNGTELFCLRSC----NFRQRIVEVFGKRLNQDLLPIDADTSLCRIHGFAGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R  A   Y F+NGR ++  +    + TA+   IP G      L  E+    +DVN+H
Sbjct: 241 ESARKKAPHQYFFVNGRYMKHPYFHKAVLTAFDRLIPQGEQVPYFLYFEVPAENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL----------------------- 337
           P K+ I+F N   I   ++ ++++A+ +     +                          
Sbjct: 301 PTKTEIKFENEQAIWQILLAAVKEAVGRFNDIPAIDFDTEGKPDIPVFNPTTGTTAPKID 360

Query: 338 SKKMISSFHQDNAPKTHL---------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                + F Q   P             P   +     Q +LF ++   +       +   
Sbjct: 361 FNPAYNPFKQTARPARPASPKGWENLYPGLDSDAGPQQSQLFDRQEGETAGTGTDGETVV 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            S    P  ES            Q    YI++    GL+I+DQH AH R+++E   +  +
Sbjct: 421 SSMATQPAMESMIEDKAPSHY--QYKGCYIMTAVKSGLMIIDQHRAHIRILYESYLRQLS 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             K  SQ +L PE++     +   +     ++  +G + +  G  + A+  +PA +   N
Sbjct: 479 EHKPHSQKVLFPEMVQFAAADQLALDSILPEMREMGFQLDSLGGGSYAVNAVPAGIEGLN 538

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +  L+R+++   +DS T+  ++  I++ LA ++A   +I  G+ + + EM+ ++ E+   
Sbjct: 539 VVALIREMVTAAVDSGTS--VKADIDHALALSLARNAAIPQGQVLGNAEMDNIVNELFAC 596

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            N +    G P    +K  DIE LF R
Sbjct: 597 DNVNYTPSGEPVIAIMKQQDIEHLFDR 623


>gi|116754773|ref|YP_843891.1| DNA mismatch repair protein MutL [Methanosaeta thermophila PT]
 gi|121694200|sp|A0B977|MUTL_METTP RecName: Full=DNA mismatch repair protein mutL
 gi|116666224|gb|ABK15251.1| DNA mismatch repair protein MutL [Methanosaeta thermophila PT]
          Length = 557

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 178/596 (29%), Positives = 293/596 (49%), Gaps = 45/596 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E+ +++IAAGE+IERP+  +KELIENS+DA +SR+   +  GG S  ++ D+G 
Sbjct: 3   RIHILDEETVSRIAAGEVIERPASVVKELIENSIDAGASRIIIEVENGGISLIKLVDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
           G+  E++P+A QRH TSKIS  DD   + T GFRGEAL +I +VS  + + +R   +  G
Sbjct: 63  GIEREDLPLAFQRHATSKISTADDLFRLKTLGFRGEALSAIASVSKCVEVHTRTRYSPVG 122

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + +   +++ ++      GT +EVR LF TIPARL  L S   E   I +++ +MAI 
Sbjct: 123 TYLRLENGRVAEIKDDGCPYGTSIEVRGLFETIPARLKHLSSPSQELARIAEIVTQMAII 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           + ++SF  S+ +   ++ N   T  +    + +  G       + +  + +   L G   
Sbjct: 183 HHRISFELSSGRRTLFRSNASETWDD---ALIRAFGLRTAKGMISIIAEGDGFDLHGMIS 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
               +   +    V++N R V  K ++  +R AY   +  GR P+ V+ +EI+P  VDVN
Sbjct: 240 SHDSSHHGSELILVYVNSRPVYSKVVVQALREAYRGFLQSGRSPLAVISIEIEPSLVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  +RF     + + +  +   A+    I +    ++            +  L   
Sbjct: 300 VHPAKREVRFLREDEVYDAVRDAALSALRSSAIPSPPPPARIA----------EPQLWSA 349

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
              +  T       E R+S   +                              Q    YI
Sbjct: 350 KPQIQRTLPLEVQAEQRISEPLI--------------------------RIVGQALDLYI 383

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I +  DG+++VDQHAA ER+ +E + +   S  I SQ L+ P  ++L  GE AL+     
Sbjct: 384 IVEDDDGIMLVDQHAAAERIRYEHLLEKCKSGSI-SQELIQPVTVELSPGEVALLDSFSG 442

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +L  +G + + FG  A ++R +PA  +    P+ +RD++ EI++           +  L 
Sbjct: 443 ELGEIGFEIDPFGGRAYSVRSVPAA-AGLESPESIRDVLREILNLGRV-CRASFRDEALK 500

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC GSI+SG ++    M RLL ++    N   C HGRP  +++    +EK+FGR
Sbjct: 501 HLACRGSIKSGERLSESAMLRLLTDLFACDNPRTCPHGRPVVVRISSESLEKMFGR 556


>gi|302345880|ref|YP_003814233.1| DNA mismatch repair protein MutL [Prevotella melaninogenica ATCC
           25845]
 gi|302149101|gb|ADK95363.1| DNA mismatch repair protein MutL [Prevotella melaninogenica ATCC
           25845]
          Length = 630

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 164/630 (26%), Positives = 309/630 (49%), Gaps = 46/630 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA ++ ++ ++   G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGATHIDVLVVDAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  ++ T GFRGEAL SI AV+ + L +R    + G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFSLRTMGFRGEALASIAAVAQIELKTRMESEDLGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G + +   P +   G+   V +LFF +PAR  FLKS   E N I     R+ + YP
Sbjct: 125 LSIAGSRFTGQEPCSCPVGSNFLVENLFFNVPARRKFLKSNTTELNNIITAFERIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SFT  +  +  + +   S    + +RI +V G+    + + ++  ++   + G+ G P
Sbjct: 185 QISFTLHSNGTELFNLRACS----YRQRIVEVFGKRLNQDLLPIDVDTSLCHIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R  A   Y F+N R ++  +    + TA+   IP G      L  ++    +DVN+H
Sbjct: 241 ESARKKAPHQYFFVNDRYMKHPYFHKAVITAFDRLIPQGEQVPYFLYFDVPAENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---------------- 344
           P K+ I+F N   I   ++ ++++A+ +     +     +                    
Sbjct: 301 PTKTEIKFENEQAIWQILLAAVKEAVGRFNDIPAIDFDTEGKPDIPVFNPNVGMSAPKVD 360

Query: 345 FHQDNAPKTHLPKYA-TSLTNTQEKLFL--------QENRLSTNDLLPSDDPTYSEDNDP 395
           F+    P     + A +S+ +  E+L+         ++++L           +    +D 
Sbjct: 361 FNPAYNPFKQTSQPAKSSVPDGWEELYADLGSGGEIRQSKLFKQREDEMISSSLGTVSDT 420

Query: 396 VEE------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           VEE            +E+       +  Q    YI++    GL+I+DQH AH R+++E+ 
Sbjct: 421 VEEGTIIPSAATQSAAESLIEDKAPSHYQYKGCYIMTAVKSGLMIIDQHRAHIRILYEEY 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
               +  K+ SQ +L PE++     +  ++ +   ++  +G + +  G  + A+  +PA 
Sbjct: 481 LHQLSEHKVHSQKVLFPEMVQFSVSDQVVLDQILPEMAEMGFQLDSLGGGSYAVNGVPAG 540

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLR 562
           +   N+  L+ D++   ++S T+   ++ I+  LA ++A   +I  G+ + S+EM+ ++ 
Sbjct: 541 IEGLNVVALINDMVASAMESGTS--AKEEIDQALALSLARNAAIPQGQVLSSMEMDNIVN 598

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           E+    N +    G P    +K  DIE LF
Sbjct: 599 ELFACSNVNYTPSGEPVIAIMKQQDIEHLF 628


>gi|88607715|ref|YP_505509.1| DNA mismatch repair protein MutL [Anaplasma phagocytophilum HZ]
 gi|123722818|sp|Q2GJE2|MUTL_ANAPZ RecName: Full=DNA mismatch repair protein mutL
 gi|88598778|gb|ABD44248.1| DNA mismatch repair protein MutL [Anaplasma phagocytophilum HZ]
          Length = 634

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/634 (32%), Positives = 331/634 (52%), Gaps = 41/634 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  LS + IN+IAAGE+I+ P+  +KEL+ENS+DA +  +   +  GG++   ++D+G
Sbjct: 1   MPIVVLSAQTINKIAAGEVIDCPASVVKELVENSIDAGAKTINVHVDKGGRNLISVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  EE+  A   H TSK+ D D +N+ T GFRGE L ++ +V+ + ++S+        
Sbjct: 61  CGIACEEMEKAFIGHATSKLIDGDLANVKTMGFRGEGLTAVASVARVKMVSKHVDAERAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I    GEK   + P  ++ GT VEVRDLFF  P RL FL++E+ E   I D++ R+A+ 
Sbjct: 121 SITFEGGEKTRDLTPGVLSCGTHVEVRDLFFATPTRLKFLRTEKAEMQNIVDLLNRLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              ++F+ + ++   +K + Q +     + +    GE F   ++E+N   + + + G+ G
Sbjct: 181 NYTIAFSLTIVERQIFKYSAQESLIERLKEMRA-FGEVFCEQSLEINHSIDHVRVYGHIG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTFN+      + F+NGR +    +L  +++AY   IP  R+PVVVL L++ P  VDVN
Sbjct: 240 LPTFNKSKPGMVHTFVNGRPIYSTLLLGAVKSAYHGLIPKDRHPVVVLALDVMPAYVDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL--------------SKKMISS 344
           VHP+K  +RF++  ++   ++ ++ +A++    +  S                 +K    
Sbjct: 300 VHPSKMEVRFQDKRLVYKAVLDALGEALSSNVYARFSPAATTSEGHDHFAMDSIEKTYGK 359

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-- 402
           F  ++       +    + N    L    + +  +             +    +      
Sbjct: 360 FFSEDTEAASTMQLQPEVLNHNIPLLFGSSHVDDSKGTHDTRFCADHTHHNDTKGSVHTK 419

Query: 403 ---------------------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                                   LG A  Q+ + YIIS+  D ++IVDQHAAHERL+ E
Sbjct: 420 SFSARSSSSAESKMEQGCMLEEPPLGYAVCQLFERYIISRAGDYVIIVDQHAAHERLVCE 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
            +++      I  Q LL PE I+L  E E  L+ E+ E L  LG+  E  G   + +RE+
Sbjct: 480 YIKKVTEQEGIKRQVLLMPEFIELGNEYELELLTEYREKLRDLGLIVEPMGDLTVVVREV 539

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PAI    +   L+  I++ I+       ++ ++ +I  T+ACY SIRSGR M+  EMN L
Sbjct: 540 PAIFGVVDAKALISKILESIMAKGDELFVKGKLSHICGTVACYSSIRSGRIMKLEEMNSL 599

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LR ME  P+S QCNHGRPT++KLKLS+I+KLF R
Sbjct: 600 LRHMESTPHSGQCNHGRPTYVKLKLSEIDKLFER 633


>gi|172087933|emb|CAQ35202.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
          Length = 669

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 164/670 (24%), Positives = 303/670 (45%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            + +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  EIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENKQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS-----QTTDGLVIVDQH----------------- 432
             E+ E    +      ++ Q +  +     Q  +     D +                 
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRI 478

Query: 433 ---------------AAHERLIF--------EKMRQDFNSTKI-----TSQTLLTPEIID 464
                          A +E  ++        E+++ ++   KI       Q LL P    
Sbjct: 479 PYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEIQDLLIPLTFH 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             + E  +I ++  +L ++GI  E FG +   +   P    K  + ++++D+I+ I++  
Sbjct: 539 FSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEK 598

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 599 KVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|256841008|ref|ZP_05546515.1| DNA mismatch repair protein mutL [Parabacteroides sp. D13]
 gi|256736851|gb|EEU50178.1| DNA mismatch repair protein mutL [Parabacteroides sp. D13]
          Length = 621

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 176/615 (28%), Positives = 295/615 (47%), Gaps = 29/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +S ++  I   GK+  Q+ D+G G
Sbjct: 11  IHLLPDHIANQIAAGEVIQRPASVVKELVENAVDAGASNIQVNIKDAGKTLIQVIDDGKG 70

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  +D  ++HT GFRGEAL SI AV+H+ L +R      G  
Sbjct: 71  MSETDARMAFERHATSKISTAEDLFSLHTMGFRGEALASIAAVAHIELRTRARGAELGTC 130

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G  + S+ P A N G+I  V++LFF +PAR  FLKS + E   I +   R+A+  P
Sbjct: 131 LSIAGSNLESIEPEACNEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNP 190

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V  +     +  + +          +RI  + G+      + L+ +S+ +T+ G+ G P
Sbjct: 191 QVGMSLYHNDAEIFNLP----ESGLRQRIINIYGKSLNQKLLSLDAQSSMVTISGFVGRP 246

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+NGR ++  +    I  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 247 DSAKKRGALQFFFVNGRYMKHPYFHKAIMQAYEQLIPAGDMPNYFVYFTLDPSSIDVNIH 306

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K   P    
Sbjct: 307 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKKSEPSTYK 366

Query: 357 --------KYATSLTNTQEKL----------FLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                    Y    T + +K           F  +   +  +    +D    E       
Sbjct: 367 APKVQVDSSYNPFDTTSYKKPEFDWSKLYQGFENDRVAAQLESESFEDAPIEELPAEASN 426

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E    ++   C Q    YI++    GL I+DQH AH R++F++   +    +  SQ +L
Sbjct: 427 PENLFTEVSNPCYQYKGRYIVTSLKSGLAIIDQHRAHVRILFDQYLSNIRQQQGVSQQVL 486

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI++    E A++    EDL  +G      G +  AI  +PA +   +   L++DI+D
Sbjct: 487 FPEIVEFTAAEAAVLPSLLEDLRFVGFDLSNLGNDNYAINGLPAGIENLDPVNLVKDIVD 546

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
             I++      +   E I  ++A   +IR G+ +   EM+ L+  +   P+S+    G+ 
Sbjct: 547 RAIETGC-EVHEKICEAIALSLAKAAAIRPGKSLSLEEMDHLIASLFSCPDSNLTPDGKT 605

Query: 579 TFIKLKLSDIEKLFG 593
               L   ++E+ F 
Sbjct: 606 IISMLTDEELERRFK 620


>gi|325109968|ref|YP_004271036.1| DNA mismatch repair protein mutL [Planctomyces brasiliensis DSM
           5305]
 gi|324970236|gb|ADY61014.1| DNA mismatch repair protein mutL [Planctomyces brasiliensis DSM
           5305]
          Length = 646

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/642 (29%), Positives = 320/642 (49%), Gaps = 53/642 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L+  ++N+IAAGE+IERP+  IKEL+ENSLDA  +R++  +  GG    +I D+G 
Sbjct: 6   RIQVLTPAVVNKIAAGEVIERPASVIKELLENSLDALCNRIDVEVEDGGAELIRIVDDGE 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV  H TSK+   DD   + T GFRGEAL SI  VS   L SR    + GA
Sbjct: 66  GILPDDLPLAVTSHATSKLRQADDLFCVQTMGFRGEALASIAEVSQFRLRSRARGESIGA 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++A++  + S + P  M  GT +E+R LF   P R  FLK    E   I++   R+A+A 
Sbjct: 126 ELAVNCGQRSEIVPCGMAQGTQIEIRQLFCNTPVRRKFLKKAGTEFGYISEQFSRVALAV 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++  + +    N Y++          ER++   G    +  + +  + + + L GY G 
Sbjct: 186 PRLQMSLTHNGKNVYRLPA---GQQLLERLTLFYGSSVTDKLIPIETQHHNVRLWGYVGH 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ ++G     Y+F+NGR +QD+ +L  +  AY   + +GR+PV  L +E+   QVDVNV
Sbjct: 243 PSLHKGTRKSQYLFLNGRYIQDRSLLHALNEAYRGLVMVGRHPVAFLFIEMPGDQVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQ----------------------KAINKKGISTSSVL 337
           HP KS +RFR+ +++   ++ +++                        +  K       L
Sbjct: 303 HPTKSEVRFRDGSLLFRMLLSTLRTKFLQSDLQSTLSIKPAGNPAAPTLQNKQERVERDL 362

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL---------------- 381
                       A +   P  A S         ++++   ++DL                
Sbjct: 363 VSWAKQQLEHQVAQRVTTPPDAPSPMPAAPSQPMEKSEAGSDDLGADAFLAAMENSGGNE 422

Query: 382 -----LPSDDPTYSEDNDPVEES----EATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                    +P  S  +D    S    + +  + GI   Q+   YI+  T  GL ++DQH
Sbjct: 423 PTTVPFAEQEPVASTASDMQSASMPVPQPSEQRSGIPALQVDDCYIVLSTDQGLTVIDQH 482

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           A HER+++E+ R      ++  Q LL P  ++L + + AL+++  + L ++G + E FG 
Sbjct: 483 ALHERVLYERFRNKILEERVEVQKLLVPLTLELSDEQVALLLDQQQMLQQMGFQVEEFGR 542

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
             +A+   P  L  + I  ++R   D++  SS T T +D ++  L  MAC  ++++G+K+
Sbjct: 543 GMLAVASHPVFLGHQVIEDVIRGFADKLG-SSETVTRRDLLDETLHMMACKAAVKAGQKL 601

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              E+  LL + +   ++  C HGRPT + L   ++++ FGR
Sbjct: 602 TPDEIVSLLAQRDIVDDAHHCPHGRPTALVLSREELDRQFGR 643


>gi|323342237|ref|ZP_08082469.1| DNA mismatch repair protein MutL [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463349|gb|EFY08543.1| DNA mismatch repair protein MutL [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 585

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 177/597 (29%), Positives = 291/597 (48%), Gaps = 18/597 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   + N IAAGE++ERP+  IKEL+ENS+DA ++ +E  I  GG    +++DNG 
Sbjct: 3   KIKVLDTHLTNMIAAGEVVERPAGIIKELVENSIDANATSIEVRIIEGGMGLIEVSDNGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++  A +RH TSKI    D + I +FGFRGEALPSI +VSH+  +S       G 
Sbjct: 63  GMSGEDLSQAFERHSTSKIKSVLDLNAISSFGFRGEALPSIASVSHVEAIS--SDGVEGH 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I           A N GT + V  LF   PARL  +K+   ET+++ D I++ A+  
Sbjct: 121 RIIIDNGVKKVKERAARNQGTTISVSSLFLKTPARLKHIKNVHYETSIVLDTIQKFAMGN 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK++FT        ++        +  +   +V G     +    + ++ +  + G   +
Sbjct: 181 PKIAFTLYNESKVSFR---SYGRNDIADVFHRVYGAQVTQDTQLFSAENYDFKIDGIMAL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NR N    +++IN R ++   I   I   Y   +P  RYP+VV+ + +DP+ VDVNV
Sbjct: 238 PQHNRANRYSIWLYINNRMIRFPKIQKAIVDGYRRHMPTDRYPIVVMNIHVDPQLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  IR     ++   I       ++K          +    +F    A +T + +  
Sbjct: 298 HPSKWEIRLSKDNVLVELIQDCFSSILDKN--------MRPQRVTFPSPVAVQTDIKEAL 349

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNY 417
                 + +  ++E +         D    S+      E   E+   +     +Q+   Y
Sbjct: 350 LGEPIPRFEPLIEEPKKIYVPDYIPDSLPISDFKPREVEPQIESGKIEPLTVLSQMSGCY 409

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I++Q  +GL I+DQHAA ER+ +E  +    +    +Q  L P II+  +     + E +
Sbjct: 410 ILAQGENGLYIIDQHAAMERVRYEYYQNKMLNQNNPTQDFLIPLIIEGRKPIIGRVHEIN 469

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           + L    ++ E FG +A  +R  P  + +K + + + +++D   D  T    +D   N+L
Sbjct: 470 QILKEFQLELEVFGEDAFVLRSTPLWIEEKVVSEFIHEVLDMFEDERTIRE-EDLRRNVL 528

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AT+AC+ S+R    M   EM  L+R++        C HGRPTFI ++   + K F R
Sbjct: 529 ATLACHSSVRFNEYMSMDEMTELVRQLRACEQPFNCPHGRPTFITVEHKQLIKEFKR 585


>gi|149370649|ref|ZP_01890338.1| DNA mismatch repair protein [unidentified eubacterium SCB49]
 gi|149356200|gb|EDM44757.1| DNA mismatch repair protein [unidentified eubacterium SCB49]
          Length = 618

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 162/623 (26%), Positives = 296/623 (47%), Gaps = 41/623 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +S +  VI   GK+  Q+ D+G 
Sbjct: 4   RIQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGASTITLVIKDAGKTLIQVIDDGV 63

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI  ++D  N+HT GFRGEAL SI A++H+ L ++  +++ G 
Sbjct: 64  GMNVTDARLAFERHATSKIKAAEDLFNLHTKGFRGEALASIAAIAHVELKTKTEEDDVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI I G +++S   V    G+ + V++LF+ IPAR NFLKS  VE   I D   R+A+A+
Sbjct: 124 QICIEGSEVTSQEIVVTPKGSTISVKNLFYNIPARRNFLKSNTVEIRHIIDEFHRVALAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + FT     S+ +K+       N  +RI  ++G       V + E+++ + + G+   
Sbjct: 184 PNLGFTMINNGSDVFKLPS----SNLRQRIVNIMGTKTNEKLVPVTEETDILKVNGFVIK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F++ +    Y F+N R ++  ++   +  AY   +  G  P   L L+++P+ +D+N+
Sbjct: 240 PEFSKKSRGDQYFFVNNRFIKSHYLHHAVTAAYEGLVKDGTQPGYFLFLDVNPQSIDINI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------------------SSV 336
           HP K+ I+F +   I   +  +I+ ++ +  I+                         ++
Sbjct: 300 HPTKTEIKFDDEHAIYAMLRATIKHSLGQFNIAPVLDFNKDNGFDTPYEYSKKVPKAPTI 359

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL---QENRLSTNDLLPSDDPTYSEDN 393
              +  + F  ++  K     Y        E L+     E      D + +    +  D 
Sbjct: 360 EVDRDFNPFKTESKQKNISFPYKREKEPAWEALYSGLKSEQTQIETDTIDTTQLQFESDP 419

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
           +     +           Q+   YIIS    GL+++ QH AH+R+++E++ ++    +  
Sbjct: 420 ENGRLFDENENDSTHGTFQLQNKYIISPIKSGLLVIHQHLAHQRVLYEELLKNITVQEAV 479

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LL P  +     E   +    E L   G     +  + + +  IP  + +    +  
Sbjct: 480 SQQLLFPLCLSFTPKEVKALNNVKEQLEHTGFVFSNWKDDEVEVSGIPVSVLESQATE-- 537

Query: 514 RDIIDEIIDSSTTYTLQDR---IENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
              I   +       + D    + ++LA +MA   ++++G  M   E   L+ ++     
Sbjct: 538 ---ILNQLLLDLQNEVPDASFSLNDLLAKSMAKSMAVKTGVAMHKGEQEHLVHQLFACKE 594

Query: 570 SSQCNHGRPTFIKLKLSDIEKLF 592
            S     RP  I + ++D +K F
Sbjct: 595 PSVSPDNRPVLITMDVNDFDKKF 617


>gi|241894949|ref|ZP_04782245.1| DNA mismatch repair protein MutL [Weissella paramesenteroides ATCC
           33313]
 gi|241871667|gb|EER75418.1| DNA mismatch repair protein MutL [Weissella paramesenteroides ATCC
           33313]
          Length = 680

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/660 (25%), Positives = 291/660 (44%), Gaps = 72/660 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +LSE + NQIAAGE+IERP   +KEL+EN+LDA +++++ ++   G    ++ DNG G
Sbjct: 9   IHELSEILANQIAAGEVIERPGSVVKELVENALDAHATQIDVLVEEAGVKSIRVIDNGDG 68

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++  A  RH TSKI+   D   + + GFRGEALPSI +V+ + L +       GA+
Sbjct: 69  IPGNQVARAFLRHATSKINSRQDLFRVQSLGFRGEALPSIASVADVVLQTATADAEQGAK 128

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G KI          GT + V DLFF  PARL +LKS+  E + I DVI R+A++YP
Sbjct: 129 IHYQGGKIIEETGTNARQGTDITVSDLFFNTPARLKYLKSQATELSQIVDVINRLAMSYP 188

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F          ++   + NGN  + I+ V G       + ++   N+  + G+  +P
Sbjct: 189 NVAFHLVHNGK---ELLQTAGNGNLQQVIASVYGVQQARKMLSVSAHDNDFEINGFISLP 245

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N +   + INGR V++  +   I   Y   + +GR+P+ +L +++DP  VDVNVH
Sbjct: 246 ELTRANRSYISILINGRFVKNYNLSKAIVKGYGSKLMVGRFPIAILQIKMDPLLVDVNVH 305

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST--------------------------- 333
           P K  +R    T + + I + + +    + +                             
Sbjct: 306 PQKHEVRLSKETQLMSLIEEMVVQRFVNENLIPNAYENYMQGNHDSYVVPEHDNDQFMTQ 365

Query: 334 ----SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
               S    ++   S    ++ +  +P+   +          Q + +    +  S D   
Sbjct: 366 LQEASVTFHQETGRSLQNISSDEIEIPEIPIANDPDLSTTQTQNDEVVPIVITKSQDLVK 425

Query: 390 SEDNDPV----------------------EESEATHYQLGIACAQIHQNYIISQTTDGLV 427
               D V                      E S +      +  ++  + +   Q    + 
Sbjct: 426 KSVRDFVAKYTAETPSLPFTEAADPVAAEEVSLSFTNTDLVDDSRHDKPFPDLQYIGQMH 485

Query: 428 IVDQHA--------AHERLIFEKMRQDFNSTKI-----TSQTLLTPEIIDLLEGECALIM 474
                A          +    E+++ ++   +I      SQ LL P ++   + +   I 
Sbjct: 486 GTFLFAQSPEGFYIVDQHAAQERIKYEYYREEIGKVGLESQKLLVPIVLTYPKIDILKIQ 545

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            H   L ++G+  E FG +A+ +RE PA + K      +R+++D ++      T +D  E
Sbjct: 546 AHASQLEQVGLNLESFGDDAVIVREHPAWIEKGQEEATIREMVDWLLRDGNITT-KDFRE 604

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                M+C  SI++   +   E   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 605 KTAIMMSCKRSIKANWALNDYEARGLLKQLAQAQNPYNCPHGRPVLVSFTNTDMEKMFKR 664


>gi|301312041|ref|ZP_07217963.1| DNA mismatch repair protein MutL [Bacteroides sp. 20_3]
 gi|300830143|gb|EFK60791.1| DNA mismatch repair protein MutL [Bacteroides sp. 20_3]
          Length = 615

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/615 (28%), Positives = 296/615 (48%), Gaps = 29/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +S ++  I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDHIANQIAAGEVIQRPASVVKELVENAVDAGASNIQVNIKDAGKTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  +D  ++HT GFRGEAL SI AV+H+ L +R      G  
Sbjct: 65  MSETDARMAFERHATSKISTAEDLFSLHTMGFRGEALASIAAVAHIELRTRARGAELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G  + S+ P A N G+I  V++LFF +PAR  FLKS + E   I +   R+A+  P
Sbjct: 125 LSIAGSNLESIEPEACNEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V  +     +  + +          +RI  + G+      + L+ +S+ +T+ G+ G P
Sbjct: 185 QVGMSLYHNDAEIFNLP----ESGLRQRIINIYGKSLNQKLLSLDAQSSMVTISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+NGR ++  +    I  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 241 DSAKKRGALQFFFVNGRYMKHPYFHKAIMQAYEQLIPAGDMPNYFVYFTLDPSSIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K   P    
Sbjct: 301 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKKSEPSTYK 360

Query: 357 --------KYATSLTNTQEKL----------FLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                    Y    T + +K           F  +   +  +    +D    E       
Sbjct: 361 APKVQVDSSYNPFDTTSYKKPEFDWSKLYQGFENDRVAAQLESESFEDAPIEELPAEASN 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E    ++   C Q    YI++    GL I+DQH AH R++F++   +    +  SQ +L
Sbjct: 421 PENLFTEVSNPCYQYKGRYIVTSLKSGLAIIDQHRAHVRILFDQYLSNIRQQQGVSQQVL 480

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI++    E A++    EDL  +G      G +  AI  +PA +   +   L++DI+D
Sbjct: 481 FPEIVEFTAAEAAVLPSLLEDLRFVGFDLSNLGNDNYAINGLPAGIENLDPVNLVKDIVD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
             I++      +   E I  ++A   +IR G+ + S EM+ L+  +   P+S+    G+ 
Sbjct: 541 RAIETGC-EVHEKICEAIALSLAKAAAIRPGKSLSSEEMDHLIASLFSCPDSNLTPDGKT 599

Query: 579 TFIKLKLSDIEKLFG 593
               L   ++E+ F 
Sbjct: 600 IISMLTDEELERRFK 614


>gi|330996057|ref|ZP_08319951.1| DNA mismatch repair protein [Paraprevotella xylaniphila YIT 11841]
 gi|329574054|gb|EGG55632.1| DNA mismatch repair protein [Paraprevotella xylaniphila YIT 11841]
          Length = 616

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/617 (27%), Positives = 287/617 (46%), Gaps = 31/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA ++R++ V+   GK+  Q+ DNG G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAVDASATRIDVVVEDAGKTSIQVVDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   + T GFRGEAL SI AV+ + L +R   +  G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFALRTMGFRGEALASIAAVAQVELRTRQAGSELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G ++    PV+  PG+   +R+LFF +PAR  FLKS Q E + I     R+A+ + 
Sbjct: 125 VNIEGSQLVGQEPVSCAPGSNFLIRNLFFNVPARRKFLKSNQTELSNILQEFERVALVHE 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+ +   S    +          +RI  + G+      + ++ +++ + L G+ G P
Sbjct: 185 DIAFSLTQNGSVVLSLP----KSTLRQRIINIFGKKLNEQLLAVDVETSLVRLSGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  A+ + IP+G      L  E+DP  +DVN+H
Sbjct: 241 DSARKKGTHQYFFVNGRYMRHPYFHKAVMEAFEQLIPVGEQVSYFLYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N   I   I+ ++++++ +     +     +            +     A 
Sbjct: 301 PTKTEIKFENELAIWQIIVAAVKESLGRFNAVPTIDFDTEGAPDIPVFGNAFSPATVEAP 360

Query: 361 SLT-NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG------------ 407
            L  N     F   +           +P Y      V       +  G            
Sbjct: 361 VLEVNPDFNPFKSGSSSGYKSQRMDWEPLYEGVEQSVSSVVTNDFGGGDFSSSLPDDLTL 420

Query: 408 -----------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                          Q    YI++    GL+I+DQH AH R+++++ R+    +   SQ 
Sbjct: 421 YADAKDTFEKSTQHYQYKGKYIMTAVKSGLMIIDQHRAHIRVLYDRYRKQMEGSNGQSQG 480

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PE++ L   E  ++    +DLH LG      G  + +I  IP+     N  +++R I
Sbjct: 481 LLFPEMLQLPPSEGIVLEHLTDDLHALGFDLSVLGGGSFSINAIPSGTEGLNPVEVVRGI 540

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +   I+       +D    I  ++A   +I  G+ + + EM  L+ ++    N +Q   G
Sbjct: 541 VHSSIEKGC-NVEEDVRHYIALSLARSAAIVQGQVLSNEEMEALVDDLFVCRNPNQTPDG 599

Query: 577 RPTFIKLKLSDIEKLFG 593
           +     L+  D+++LFG
Sbjct: 600 KVVVAILEQDDLDQLFG 616


>gi|262383881|ref|ZP_06077017.1| DNA mismatch repair protein MutL [Bacteroides sp. 2_1_33B]
 gi|262294779|gb|EEY82711.1| DNA mismatch repair protein MutL [Bacteroides sp. 2_1_33B]
          Length = 615

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/615 (28%), Positives = 297/615 (48%), Gaps = 29/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +S ++  I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDHIANQIAAGEVIQRPASVVKELVENAVDAGASNIQVNIKDAGKTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  +D  ++HT GFRGEAL SI AV+H+ L +R      G  
Sbjct: 65  MSETDARMAFERHATSKISTAEDLFSLHTMGFRGEALASIAAVAHIELRTRARGTELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G  + S+ P A N G+I  V++LFF +PAR  FLKS + E   I +   R+A+  P
Sbjct: 125 LSIAGSNLESIEPEACNEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V  +     +  + +          +RI  + G+      + L+ +S+ +T+ G+ G P
Sbjct: 185 QVGMSLYHNDAEIFNLP----ESGLRQRIINIYGKSLNQKLLSLDAQSSMVTISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+NGR ++  +    I  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 241 DSAKKRGALQFFFVNGRYMKHPYFHKAIMQAYEQLIPAGDMPNYFVYFTLDPSSIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K   P    
Sbjct: 301 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKKSEPSTYK 360

Query: 357 --------KYATSLTNTQEKL----------FLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                    Y    T + +K           F  +   +  +    +D    E       
Sbjct: 361 APKVQVDSSYNPFDTTSYKKPEFDWSKLYQGFENDRVAAQLESESFEDAPIEELPAEASN 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E    ++   C Q    YI++    GL I+DQH AH R++F++   +    +  SQ +L
Sbjct: 421 PENLFAEVSNPCYQYKGRYIVTSLKSGLAIIDQHRAHVRILFDQYLSNIRQQQGVSQQVL 480

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI++    E A++    EDL  +G      G +  AI  +PA +   +   L++DI+D
Sbjct: 481 FPEIVEFTAAEAAVLPSLLEDLRFVGFDLSNLGNDNYAINGLPAGIENLDPVNLVKDIVD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +I++      +   E I  ++A   +IR G+ + S EM+ L+  +   P+S+    G+ 
Sbjct: 541 RVIETGC-EVHEKICEAIALSLAKAAAIRPGKSLSSEEMDHLIASLFSCPDSNLTPDGKT 599

Query: 579 TFIKLKLSDIEKLFG 593
               L   ++E+ F 
Sbjct: 600 IISMLTDEELERRFK 614


>gi|307354003|ref|YP_003895054.1| DNA mismatch repair protein MutL [Methanoplanus petrolearius DSM
           11571]
 gi|307157236|gb|ADN36616.1| DNA mismatch repair protein MutL [Methanoplanus petrolearius DSM
           11571]
          Length = 618

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 191/611 (31%), Positives = 306/611 (50%), Gaps = 22/611 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDN 59
           KI  LS   IN+IAAGE+IERP+  +KEL+ENSLDAE++ ++  I     G +  +I+D+
Sbjct: 11  KIHILSNATINKIAAGEVIERPASVVKELVENSLDAEATSIKVEITSDNNGIAKIRISDD 70

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS--RPPQN 115
           G+GM ++   ++  RH TSKIS   D   I T GFRGEAL SI AVS +T+++  R  + 
Sbjct: 71  GYGMDADSALISFSRHATSKISKISDLYEISTMGFRGEALASIAAVSKVTMITKQRTLEP 130

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
           + G +I I G  +    PV+   GT + V  LFF  P R  FLKS + E   I  V+   
Sbjct: 131 SPGTKIVIEGGDVVEQSPVSAPDGTSIFVEKLFFNTPVRKKFLKSVKTEFTHIFRVVEEA 190

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           ++A   +SF                 +G+  + I+ V G ++    + +      + + G
Sbjct: 191 SLANSGISFQLLHNGK---VSLSTGKSGSVLDTITYVYGTEYAKEMIPVKSLQTFMKVDG 247

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +   P+ +  N+ +  + +N R V    ++  ++ AY   +P  RYPV  L + ID + V
Sbjct: 248 FCAPPSLDAPNSRKIIISVNNRPVYSLPLVQAVKRAYGTLLPRERYPVCFLNIRIDRKVV 307

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK  +RF     I   I+ S+++A++ + +  S     K I          +  
Sbjct: 308 DVNVHPAKKEVRFSREKEITEEIVASVREALDSRNLLFSYGAGNKNIIRKVSVVDDTSQK 367

Query: 356 PKYATSLTNTQEKLFL------QENRLSTNDLLPSDDPTYSEDNDPVEESEATHY--QLG 407
           P +  S  +     +       +ENR   +    S   +    +    ESE         
Sbjct: 368 PLFCVSSEDPVYNPYSGRTNKIKENRSDHSLAEYSTTDSRLRSSADAAESEEDDRKLPYM 427

Query: 408 IACAQIHQNYIISQTT----DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
               Q+  +YI++Q      D +VI+DQHAAHER+++E M  +  ++   SQ LL P +I
Sbjct: 428 KVIGQVDDSYIVTQMRGSDEDEMVIIDQHAAHERIMYE-MVCEKRNSGHISQELLVPSVI 486

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                E A + E+ + L   G   E FG +  A+R +P IL KK   + LRDI++++++ 
Sbjct: 487 PFKPSESAALSENLQLLEEEGFFLEEFGKDTYALRAVPVILGKKAGTETLRDIVNDLLEG 546

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               +L    E I +T+AC  +I++G  +   +M RL+ ++ +  N   C HGRPT I  
Sbjct: 547 GRAQSLDILKEKISSTIACKAAIKAGTSLSVEQMERLVDQLSRTKNPYSCPHGRPTMISF 606

Query: 584 KLSDIEKLFGR 594
             S ++ +F R
Sbjct: 607 SKSRLDSMFKR 617


>gi|42520375|ref|NP_966290.1| DNA mismatch repair protein MutL-2 [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410113|gb|AAS14224.1| DNA mismatch repair protein MutL-2 [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 598

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 221/610 (36%), Positives = 341/610 (55%), Gaps = 29/610 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG++   + D+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASLVKELVENAIDAGSSEIEIKIESGGRNLITVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A+ RH TSK+SD +   I   GFRGEALPSI AVS + L S+        
Sbjct: 61  NGIEKNDLELALMRHATSKLSDSELIEIRHLGFRGEALPSIAAVSRMKLSSKASGAKEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I    GEKI  + P ++  GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SIRYEGGEKIREITPCSLLQGTYIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K   Q++  N    I +    +F +N++E+ E+   I L+G+  
Sbjct: 181 NYSIGFTLTSGNKKLLKYVKQTSLFNRLCEIEE----EFQSNSLEVKEEEEGIKLKGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  NRGN+ Q Y F+NGR ++D  ++  IR AY + IP  RYP  VL LE+   QVDVN
Sbjct: 237 KPNVNRGNSTQIYTFVNGRPIKDNLLVGAIRYAYHDFIPNNRYPFAVLHLEVPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-----SSFHQDNAPKT 353
           VHP KS +RF+N  +I   + + I K ++ +  +    + +++I     S    D+  K 
Sbjct: 297 VHPNKSEVRFQNKRLIYEIVRRGIIKTLSTRFAAGDQGIEEELIFNDSKSQEQVDSQEKK 356

Query: 354 HLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSEDNDPVEESEAT---HY 404
              ++     +  E   ++      E R S  +     +    +    +E  +      +
Sbjct: 357 DQKEFYEKRPSLLENRLMKEFNAPDERRQSLPETFKYGESLPQKGTMVLERKQIDLVEDH 416

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A  Q+H  YII++  D L+IVDQHAA+ERLI+E ++     + I  Q LL   +  
Sbjct: 417 PLGYARCQVHNTYIIAEAGDRLIIVDQHAAYERLIYECLK---QKSSIKRQKLLPETVEI 473

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             +    ++  + ++L  +G   E    + + I+EIPAIL   +I ++L DI+D++++  
Sbjct: 474 KNQAGMGMVKTYKDELFEMGFDIEIQSEDKVTIKEIPAILGTIDIKEMLVDIVDKLMEME 533

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            T  ++D++  I AT+AC+G+   GRKM+  EMN +LR++EK P S    H RPT+I++K
Sbjct: 534 DTLPIEDKVNKISATIACHGA---GRKMKLEEMNEILRQIEKTPYSG---HERPTYIEMK 587

Query: 585 LSDIEKLFGR 594
           L DIEKLF R
Sbjct: 588 LIDIEKLFER 597


>gi|315607435|ref|ZP_07882431.1| DNA mismatch repair protein MutL [Prevotella buccae ATCC 33574]
 gi|315250867|gb|EFU30860.1| DNA mismatch repair protein MutL [Prevotella buccae ATCC 33574]
          Length = 621

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/620 (26%), Positives = 295/620 (47%), Gaps = 36/620 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+ENS+DA ++ +  ++   G++  Q+TDNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENSVDAGATVINVLVVDAGRTSIQVTDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   +HT GFRGEAL SI AV+ + L +R   +  G Q
Sbjct: 65  MSDTDARLSFERHATSKIRQADDLFALHTMGFRGEALASIAAVAQVELKTRQQSDEVGTQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G +     P +   G+  +V +LFF +PAR  FLKS   E N I    +R+ + YP
Sbjct: 125 LTIAGSRFLGQEPCSCPVGSNFKVENLFFNVPARRKFLKSNTTELNNIIAAFQRIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SFT  +  +    +      GN  +RI  V G+    + + +N ++   ++ G+ G P
Sbjct: 185 ALSFTLHSNDTELINLRA----GNLRQRIVDVFGKRLNQDLLSVNVETTLCSIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    + +A+   +P G      L  E+ P  +DVN+H
Sbjct: 241 ESARKKGAHQYFFVNGRYMKHPYFAKAVMSAFERLVPQGEQVPFFLYFEVAPENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------------KKMISSFHQ 347
           P K+ I+F N   I   +  ++++A+       +                    +S+   
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVREAVGMFNDVPAIDFDTVGKPDIPVFSGSDAEVSAPRV 360

Query: 348 DNAP---KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV-------- 396
              P       P  ATSL+ +      + +       L       S+  + V        
Sbjct: 361 AYNPGYNPFSQPSPATSLSASPGSWQRESSVPDRWQELYEGLGRSSQSRETVIFADEEVR 420

Query: 397 -----EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                 ++ +   +   A  Q    YI++    GL+I+DQH AH R+++E+      + K
Sbjct: 421 SAASGADAHSVISEKSPAHYQYKGKYIMTAVKSGLMIIDQHRAHVRILYEQYLDRLQAHK 480

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
             SQ +L PE+++L      L+ +   +L  LG +    G N+ AI  +PA +   +  +
Sbjct: 481 CESQKVLFPEVVELSAAGGVLMQKMMPELEALGFELTPMGGNSYAINAVPAGVDGVDYVR 540

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L+ +++D+  D  ++ + +    ++  ++A   +I  G+ + + EM  ++  +    N +
Sbjct: 541 LVTEMLDDAAD-KSSDSSEAIRRSLALSLARSMAIPYGQVLGNAEMENVVNSLFACSNVN 599

Query: 572 QCNHGRPTFIKLKLSDIEKL 591
               GR     L+  +I+ L
Sbjct: 600 YAPDGRKVLAILRQQEIDHL 619


>gi|288924573|ref|ZP_06418510.1| DNA mismatch repair protein MutL [Prevotella buccae D17]
 gi|288338360|gb|EFC76709.1| DNA mismatch repair protein MutL [Prevotella buccae D17]
          Length = 621

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 166/620 (26%), Positives = 295/620 (47%), Gaps = 36/620 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+ENS+DA ++ +  ++   G++  Q+TDNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENSVDAGATVINVLVVDAGRTSIQVTDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   +HT GFRGEAL SI AV+ + L +R   +  G Q
Sbjct: 65  MSDTDARLSFERHATSKIRQADDLFALHTMGFRGEALASIAAVAQVELKTRQQSDEVGTQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G +     P +   G+  +V +LFF +PAR  FLKS   E N I    +R+ + YP
Sbjct: 125 LTIAGSRFLGQEPCSCPVGSNFKVENLFFNVPARRKFLKSNTTELNNIIAAFQRIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SFT  +  +    +      GN  +RI  V G+    + + +N ++   ++ G+ G P
Sbjct: 185 ALSFTLHSNDTELINLRA----GNLRQRIVDVFGKRLNQDLLSVNVETTLCSIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    + +A+   +P G      L  E+ P  +DVN+H
Sbjct: 241 ESARKKGAHQYFFVNGRYMKHPYFAKAVMSAFERLVPQGEQVPFFLYFEVAPENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------------KKMISSFHQ 347
           P K+ I+F N   I   +  ++++A+       +                    +S+   
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVREAVGMFNDVPAIDFDTVGKPDIPVFSGSDAEVSAPRV 360

Query: 348 DNAP---KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV-------- 396
              P       P  ATSL+ +      + +       L       S+  + V        
Sbjct: 361 AYNPGYNPFSQPSPATSLSASPGSWQRESSVPDRWQELYEGLGRSSQSRETVIFADEEVC 420

Query: 397 -----EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                 ++ +   +   A  Q    YI++    GL+I+DQH AH R+++E+      + K
Sbjct: 421 SAASGADAHSVISEKSPAHYQYKGKYIMTAVKSGLMIIDQHRAHVRILYEQYLDRLQAHK 480

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
             SQ +L PE+++L      L+ +   +L  LG +    G N+ AI  +PA +   +  +
Sbjct: 481 CESQKVLFPEVVELSAAGGVLMQKMMPELEALGFELTPMGGNSYAINAVPAGVDGVDYVR 540

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L+ +++D+  D  ++ + +    ++  ++A   +I  G+ + + EM  ++  +    N +
Sbjct: 541 LVTEMLDDAAD-KSSDSSEAIRRSLALSLARSMAIPYGQVLGNAEMENVVNSLFACSNVN 599

Query: 572 QCNHGRPTFIKLKLSDIEKL 591
               GR     L+  +I+ L
Sbjct: 600 YAPDGRKVLAILRQQEIDHL 619


>gi|305666510|ref|YP_003862797.1| putative DNA mismatch repair protein [Maribacter sp. HTCC2170]
 gi|88708777|gb|EAR01012.1| putative DNA mismatch repair protein [Maribacter sp. HTCC2170]
          Length = 616

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 155/620 (25%), Positives = 303/620 (48%), Gaps = 39/620 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +  ++ +I  GGK+   + D+G G
Sbjct: 5   IKLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGAKSIKLIIKDGGKALIHVIDDGIG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  ++ +RH TSKI  ++D  N++T GFRGEAL SI A++H+ + ++P Q      
Sbjct: 65  MSATDARLSFERHATSKIQKAEDLFNLNTKGFRGEALASIAAIAHVEMQTKPEQEEMATH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G +I          GT + V++LFF IPAR NFLKS QVE   ITD   R+A+A+P
Sbjct: 125 LRIEGSEIKFQEVCVAPKGTSMSVKNLFFNIPARRNFLKSNQVELRHITDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F F    S  + +       +  +RI  + G       V +NE++  + + G+   P
Sbjct: 185 HIAFHFYNNGSELFILP----EASQRQRIVHIFGSRTNEKLVPVNEETQVVKISGFINKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + + F+N R ++  ++   + +A+   I    YP   L L++DP  +D+N+H
Sbjct: 241 EFAKKSRGEQFFFVNNRFIKSPYLHHAVLSAFEGLIKTDSYPGYFLYLDVDPGSIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------- 341
           P K+ ++F +   +   +  +++ ++ +  +  +    +                     
Sbjct: 301 PTKTEVKFDDEHTLYAILRSTVKHSLGQFNVVPALDFEQDQNLATPYNYKNKDASQPNVT 360

Query: 342 ----ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ-ENRLSTNDLLPSDDPTYSEDNDPV 396
                + F +       +  +    T   E L++  E+++  +D   S           +
Sbjct: 361 VDSGFNPFQEVAQKSQGVRTFKKQNTEGWENLYVGLESKVGKDDNFSSLKFESETITGSI 420

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            E +    +      Q+ + YI++    G+V++DQ  AH+R+++E+  ++    +  SQ 
Sbjct: 421 FEGQQESLESIATTFQLRRKYIVTTIKSGMVVIDQSRAHQRVLYEQFLKNITVNEAVSQQ 480

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI----PQL 512
           LL P  +   + + A++ E  E L  +G    +     + I  +P ++S+  +     QL
Sbjct: 481 LLFPLSLSFSKTDIAVLKEIKESLTTIGFVFSKVENEEVKITGVPLMVSESEVGIVLDQL 540

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + D   E+ + S + T     + +  T+A   ++R+G  + +     L+ ++     S  
Sbjct: 541 ISDFQMEVTEDSFSQT-----DVLAKTLAKTLAVRTGEVLNNASQLALVNDLFACKESMV 595

Query: 573 CNHGRPTFIKLKLSDIEKLF 592
               +P +I +  +DI+K F
Sbjct: 596 SPFNKPVYITITENDIDKKF 615


>gi|124004454|ref|ZP_01689299.1| DNA mismatch repair protein MutL [Microscilla marina ATCC 23134]
 gi|123990026|gb|EAY29540.1| DNA mismatch repair protein MutL [Microscilla marina ATCC 23134]
          Length = 650

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/644 (28%), Positives = 315/644 (48%), Gaps = 59/644 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I NQIAAGE+++RP+  +KEL+EN++DA+S  V+ +I   GK   Q+ D+G G
Sbjct: 5   IQLLPDSIANQIAAGEVVQRPASVVKELMENAIDAKSRNVKVIIKDAGKILIQVVDDGCG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  SDD  +I+T GFRGEAL SI AV+ + L ++  Q+  G  
Sbjct: 65  MSETDARLSFERHATSKIRSSDDLFSIYTMGFRGEALASIAAVAEVELKTKREQDELGVF 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++  ++ +    A   GT + V++LFF +PAR NFLKS  VE   I D   R+A+AYP
Sbjct: 125 LCMAASQLKTQEANACQHGTSIAVKNLFFNVPARKNFLKSNAVEMRHILDQFHRIALAYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+     +  Y +      G    RI+ + G+++ +      E +  I ++GY G P
Sbjct: 185 EVNFSLYHNDTEVYNLYA----GKMVNRITAIFGKNYRDKLAFCQEDTPLIKIKGYIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+N R ++  ++   +  A+   I    +P  VL ++IDP  +D+NVH
Sbjct: 241 ENAKKTRGDQFFFVNNRYIRHGYLHHAVMGAFEGLIASDMHPFYVLFIDIDPVHIDINVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM----------------ISS 344
           P K+ I+F +   I   I  +++K++    ++ +      +                 S+
Sbjct: 301 PTKTEIKFDDERTIYAIIQAAVKKSLGSHNLTPTLDFQTNVNLDPTLPQRQQFPNSDTSA 360

Query: 345 FHQDN--------------APKTHLPKYATSLTNTQ------EKLFLQENRLSTNDLLPS 384
           F                   P    P+   +L+N Q      EK  ++EN   T D    
Sbjct: 361 FESGGEKGGSSSSSGYTSSRPYEKSPQEKRNLSNWQKIYEGLEKKAIEENSPDTFDFDKE 420

Query: 385 DDPTYSEDNDPVEESEAT--------------HYQLGIACAQIHQNYIISQTTDGLVIVD 430
                SE     E +                          Q++  YII+    GL+++D
Sbjct: 421 LKGETSEQTLTFESNANNLGKQPREEGKGLEAKPSGERPSFQVNNQYIITPVRSGLMMID 480

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           Q AAHER++++K      +   T+Q LL P  + L   +  L++E + ++  LG   E  
Sbjct: 481 QQAAHERVLYDKFVVSLKNDNGTAQQLLFPTTVSLQPADFQLVLEIETEIRNLGFIFELL 540

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSG 549
             N + IR +PA ++ +N  +L    I++  +   T  ++   E +LA ++A   +IR+G
Sbjct: 541 PDNRLEIRGVPADITNENEQELFEGFIEQFKNYQATLKVE--RETLLARSLAKRSAIRTG 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            K+ +IEMN L+ ++  + N +    GRPT + L L  ++  F 
Sbjct: 599 AKLTAIEMNLLVDQLFASSNPNYTPDGRPTLVMLPLDKMKDFFE 642


>gi|260893757|ref|YP_003239854.1| DNA mismatch repair protein MutL [Ammonifex degensii KC4]
 gi|260865898|gb|ACX53004.1| DNA mismatch repair protein MutL [Ammonifex degensii KC4]
          Length = 560

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 184/595 (30%), Positives = 289/595 (48%), Gaps = 40/595 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L    ++ +AAGE++ERP+  +KEL+EN+LDA++ R+   +         + D+G 
Sbjct: 3   KIKVLDPDTVSLVAAGEVVERPASVVKELVENALDAQARRITVRVEKD-FGPITVVDDGC 61

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++E+ +A  RH TSKIS   D  NI T GFRGEALPSI AVS LT+ +R P    G 
Sbjct: 62  GIPADEVLLAFSRHATSKISTARDLENITTLGFRGEALPSIAAVSRLTMKTREPGAEEGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I+G ++     V   PGT V VRDLF+ +PAR  FL S + E++ I D++  +A+A+
Sbjct: 122 LVEIAGGEVLRKETVGAPPGTQVVVRDLFYNVPARRKFLSSWRAESSHIVDLLEHLALAW 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF+F           F +        ++ + G +  +  + L     E+ + G+ G 
Sbjct: 182 PEVSFSFWLAGREV----FHTPGTGLLPALTAIYGAEVTSTLLPLEAGKGELKVSGFLGK 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG+     + +N R V+   +   I  A+   +P G+YP  VL LE+ PR VDVNV
Sbjct: 238 PELARGHRRHQVIVVNRRLVKHYGLAQAIAEAFGSLLPAGKYPFFVLFLELPPRMVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +RF N   +     +++++A+                    +  A     P   
Sbjct: 298 HPQKTVVRFANEGEVLALCREAVKRAL----------------FGERRPMAKALPSPPPR 341

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           +     +E  F  +   ST D +    P Y            +          +   YI+
Sbjct: 342 SWDEALRELRFSVKEVASTADRVAESSPAYL----------FSFLPQLTYLGFLPPVYIL 391

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  +GL +VDQHAAHER++FEK  +   +  + SQ L++P  ++L         E    
Sbjct: 392 AQGPEGLYVVDQHAAHERILFEKYAEAVENQGVPSQGLVSPVPVNL---RGREWEEIAPH 448

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           + R G   E FG     +R IPA L       LL +++    +      +  R   +LA 
Sbjct: 449 IARFGFVLEPFGRGTALLRAIPADLEVAAACLLLEELLTSWEE----IPVPRREREVLAL 504

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC+G++R+G  +       LL ++      + C HGRPTF  L   ++EK  GR
Sbjct: 505 MACHGAVRAGDTLPPPLAQELLNQLAACREPTVCPHGRPTFFSLSYQELEKRLGR 559


>gi|220929118|ref|YP_002506027.1| DNA mismatch repair protein MutL [Clostridium cellulolyticum H10]
 gi|219999446|gb|ACL76047.1| DNA mismatch repair protein MutL [Clostridium cellulolyticum H10]
          Length = 665

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/665 (25%), Positives = 294/665 (44%), Gaps = 76/665 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   N+IAAGE++E+P+  +KEL+ENS+DA ++ +   I  GG S+ +I DNG 
Sbjct: 3   RIIVLDENTSNKIAAGEVVEKPASVVKELVENSIDAGATSISVDIKNGGISYIKIADNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++ +A +RH TSKI  ++D  ++ T GFRGEAL SI +V+ + LM++   +  G 
Sbjct: 63  GMDEDDVEIAFERHATSKIKRAEDLDSVITMGFRGEALASIASVASVELMTKTAASAYGM 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  +  VR      GT   ++DLFF  PAR  FLK +  E   I+D I R+A+  
Sbjct: 123 YVHVRGGVLQDVRQTGCPVGTTFIIKDLFFNTPARYKFLKKDSTEAGYISDTISRIALGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF  +   + +  +     N +    I  + G++ I N V +    +++ + GY G 
Sbjct: 183 PNISFKLT---NGKTPLIHTPGNNDLKSVIYSIYGKEIIKNLVHIEYADDKVKISGYIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   ++IN R V+ K +  ++  A++  +   R+P  VL ++I+P  VD NV
Sbjct: 240 PEAARSNRNYQSLYINKRYVKSKLVSYSVEQAFSSILMKNRFPFFVLNIDINPILVDANV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKG---ISTSSVLSKKMISSFHQDNAPKTHLP 356
           HPAK  +RF + + +   I  ++  A+   G      S     + +  F  ++ PK    
Sbjct: 300 HPAKIEVRFADESYLSRTIYMAVSNALTTGGGLFNPVSVPDKDRELFKFADNSQPKKEYV 359

Query: 357 KYATSLTNTQEK----------------------------LFLQENRLSTNDLLPSDDPT 388
           +    L N QE+                               Q    S+     S+D  
Sbjct: 360 QNEIQLNNKQEENKKADEIRLFTKALEPLAKVDVHKVSTAAEKQPADTSSFTFTRSEDYN 419

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDF 447
             +  + +   +  +       +   +    SQ  D  +   DQ    ER+  E     +
Sbjct: 420 VGQPKNLITNVKQENSDELKNNSPGIREDDSSQNFDETINKQDQEVNKERVYTELADMKY 479

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHD------------------------------ 477
                ++  LL      ++  + A                                    
Sbjct: 480 IGQAFSTYILLQNNDELVMVDQHAAHERIIYEKLRAKFDSQENTTQLLLEPVVIQLQPFE 539

Query: 478 --------EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
                   + L  +G   E FG N I IR IP ++   +   +  ++  ++ +S    + 
Sbjct: 540 IDTIKAKEKLLTGIGFVYEDFGNNTIIIRGIPYMVGDYSPRDIFIELTQKLQESIKPVST 599

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               + I+ T+AC  +I++ +K+   E+++LL E+        C HGRPT I+L  ++IE
Sbjct: 600 P-LADEIIHTIACKAAIKANKKLDEKEVHQLLTELSNTGRRYTCPHGRPTVIRLTKNEIE 658

Query: 590 KLFGR 594
           K+F R
Sbjct: 659 KMFKR 663


>gi|332878096|ref|ZP_08445826.1| DNA mismatch repair protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684058|gb|EGJ56925.1| DNA mismatch repair protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 616

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/617 (26%), Positives = 290/617 (47%), Gaps = 31/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA ++R++ ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAVDASATRIDVLVEDAGKTSIQVVDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +R   +  G  
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAQVELRTRQAGSELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G ++    PV+  PG+   +R+LFF +PAR  FLKS Q E + I     R+A+ + 
Sbjct: 125 VNIEGSQLVGQEPVSCAPGSNFLIRNLFFNVPARRKFLKSNQTELSNILQEFERVALVHE 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+ +   S    +          +RI  + G+      + ++ +++ + L G+ G P
Sbjct: 185 DIAFSLTQNGSVVLSLP----KSTLRQRIINIFGKKLNEQLLAVDVETSLVRLSGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  A+ + IP+G      L  E+DP  +DVN+H
Sbjct: 241 DSARKKGAHQYFFVNGRYMRHPYFHKAVMEAFEQLIPVGEQVSYFLYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N   I   I+ ++++++ +     +   + +            +     A 
Sbjct: 301 PTKTEIKFENELAIWQIIVAAVKESLGRFNAVPTIDFNTEGALDIPVFGNAFSPATVEAP 360

Query: 361 SLT-NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN--- 416
            L  N     F   +           +P Y         +    +  G   + +  +   
Sbjct: 361 VLEVNPDFNPFKSGSSSGYKSQRMDWEPLYDGMEKSASPAVTNDFGGGDFSSSVPDDLTL 420

Query: 417 --------------------YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                               YI++    GL+I+DQH AH R+++++ R+    +   SQ 
Sbjct: 421 YADTKDTFEKSTQHYQYKGKYIMTAVKSGLMIIDQHRAHIRVLYDRYRKQMEGSNGQSQG 480

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PE++ L   E  ++    +DLH LG      G  + +I  +P+     N  +++R I
Sbjct: 481 LLFPEMLQLPPSEGIVLEHLADDLHALGFDLSVLGGGSFSINAVPSGTEGLNPVEMVRGI 540

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +   I+       +D    I  ++A   +I  G+ + + EM  L+ ++    N +Q   G
Sbjct: 541 VHSSIEKGC-NVEEDVRHYIALSLARSAAIVQGQVLSNEEMEALVDDLFVCRNPNQTPDG 599

Query: 577 RPTFIKLKLSDIEKLFG 593
           +     L+  D+++LFG
Sbjct: 600 KVVVAILEQDDLDQLFG 616


>gi|146297051|ref|YP_001180822.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410627|gb|ABP67631.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 599

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 172/600 (28%), Positives = 302/600 (50%), Gaps = 9/600 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ + +LSE+I + +AAGE++ERP+  +KE+IENS+DA +S ++  +  GG    ++ DN
Sbjct: 1   MRELNRLSEEITHILAAGEVVERPASCLKEVIENSIDAGASLIDIKLEKGGIKKIEVYDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ S++I    +RH TSKI   DD   I T GFRGEAL +I +VS +TL+SR  +   
Sbjct: 61  GKGIHSDDIEYVFERHTTSKIKSVDDIFKITTMGFRGEALCAISSVSKVTLISRHYEQEQ 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G ++ + G K+ S        GT + + DLF+  PARL FLKS   E     +V+ ++AI
Sbjct: 121 GCKVEVEGGKVLSKTIYPFEKGTRITIEDLFYNTPARLKFLKSPSAEQKYCIEVVEKIAI 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            YP++SF        +    F   +      I+ V G + + N ++ + +   + + G+ 
Sbjct: 181 CYPEISFRMQVDNKRQL---FTPGDSKVESAIASVFGSEILKNLIDFSHQEEGLKVWGFF 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  ++   + ++ ++N R ++ K + + I  A+  +I  GR+P+V L +EI+P  +DV
Sbjct: 238 VNPVLSKSTRSGYHFYVNRRFIRSKLLSTCIDEAFKNSILTGRFPIVFLFIEINPIDIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  I+F++   + N + +++   +  + +     L    +    QD     +L  
Sbjct: 298 NVHPAKLEIKFKDERYVYNTVYKTVSSTLQSEKMIPKPTLDNLYLPQSVQDVKMVRNLWS 357

Query: 358 Y---ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           Y     S     ++ F +  ++         +      +     SE  + +         
Sbjct: 358 YTQEQQSKEKAFQEDFNEFLKIEEQLDFSKVEVGKESKDVITVFSEEFNVETYKIVGYAF 417

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             YII Q  D L ++DQHA HER +FE ++++    KI  Q LL+P +I+L   +    +
Sbjct: 418 DTYIIVQKEDSLYLIDQHAVHERRLFELLKEEIFRNKIQRQILLSPIVIELPISQKEFAL 477

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E+     +LG + + FG N I +R  P +         + DII+ I + S    +    E
Sbjct: 478 ENVHIFEKLGFEIDDFGKNEIVVRTYPLLFEGAVDKFFILDIIEMIYNESVEKGITHFSE 537

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +L  +AC  +++    +  +E   +++ +        C HGRP  I+++  +IEK+F R
Sbjct: 538 ELLKKIACRAAVKGNMNISDLEKEEIVKLVLVEKKIFNCPHGRPVVIEIQKREIEKMFKR 597


>gi|116333842|ref|YP_795369.1| DNA mismatch repair protein [Lactobacillus brevis ATCC 367]
 gi|122269471|sp|Q03R34|MUTL_LACBA RecName: Full=DNA mismatch repair protein mutL
 gi|116099189|gb|ABJ64338.1| DNA mismatch repair protein MutL [Lactobacillus brevis ATCC 367]
          Length = 672

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 161/662 (24%), Positives = 284/662 (42%), Gaps = 75/662 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+  + +QIAAGE++ERP+  +KEL+EN++DA S++++  +   G     + D+G 
Sbjct: 3   KIHELASVLADQIAAGEVVERPASVVKELVENAIDAHSTQIDITVEEAGLQRIVVVDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+  MA +RH TSKI+D  D   I + GFRGEALPSI +V+ +TL++       G 
Sbjct: 63  GIADEDSEMAFKRHATSKITDRRDLFRIKSLGFRGEALPSIASVADVTLITSTGG--VGT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I   G  I   +      GT V V++LF  +PARL +LKS   E   ITD++ R+A++Y
Sbjct: 121 EIHNVGGIIQEHKAAEARKGTTVIVKELFGNVPARLKYLKSPATELARITDIVNRLALSY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+         ++   +  G+  + I+ + G       V ++ ++ +  + GY  +
Sbjct: 181 PTVAFSLVHNGR---ELTRTTGRGDLQQVIAGIYGVQSARKMVAISGQNPDFRVSGYVSL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + +NGR + +  +   +   Y   + +GRYP+ VL +++DP  VDVNV
Sbjct: 238 PELTRASRQYISLLLNGRYIHNFQLSKALIAGYGSKLMVGRYPLAVLDIQMDPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------------- 344
           HP K  +R      +   I +++ K ++++ +        +                   
Sbjct: 298 HPTKQEVRISQEAELTQLIQETVFKRLSQENLIPDVFDEVQTKQPETKTTDQLTMALNDV 357

Query: 345 -----------------FHQDNAPKTHLPKYATSLTNTQ--------------------- 366
                              +  A  +     ATS+                         
Sbjct: 358 SAKYDMSDRQVLGAQQMPSESVAQPSDAAPVATSMGQPAPLQTPEEVPVEPVVVHDKRDF 417

Query: 367 -----EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
                ++   +  +      L     + + D   VE +            +      + Q
Sbjct: 418 ATPAVQRFDAKYRQEQVAAPLGQSAASAAVDQPAVEATAPIEPVQATPAQRFPTLRYLGQ 477

Query: 422 TTDGLVIVD---------QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
                ++ +         QHAA ER+ +E  RQ         Q LL P ++D    +   
Sbjct: 478 VHGTYLLAEADDGLYLVDQHAAQERVNYEFYRQAIGEVSDDEQKLLVPIVLDYPTTDVLE 537

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +  H E L  +GI  + FGPN+  + E P           ++++ID ++      ++   
Sbjct: 538 LTNHLETLASVGIHLDSFGPNSFIVHEHPTWFKAGQETATIQEMIDWVLKDGKI-SVAAF 596

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E     M+C  +I++   +   +   LL+++    N   C HGRP  +     D+EKLF
Sbjct: 597 REKTAIMMSCKRAIKANHHLDDQQARALLQKLATAENPFNCPHGRPVLVHFTDQDLEKLF 656

Query: 593 GR 594
            R
Sbjct: 657 KR 658


>gi|260063474|ref|YP_003196554.1| putative DNA mismatch repair protein [Robiginitalea biformata
           HTCC2501]
 gi|88782918|gb|EAR14092.1| putative DNA mismatch repair protein [Robiginitalea biformata
           HTCC2501]
          Length = 623

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 151/623 (24%), Positives = 293/623 (47%), Gaps = 38/623 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE+++RP+  +KEL+EN++DA +SRV+ ++  GGK+  Q+ D+G 
Sbjct: 4   RIKLLPEHVANQIAAGEVVQRPASVVKELLENAVDAGASRVQLIVKDGGKALVQVVDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  ++ +RH TSKIS+  D   +HT GFRGEAL SI A++ + + +R        
Sbjct: 64  GMSPADALLSFRRHATSKISEASDLFRLHTKGFRGEALASIAAIAQVEMQTREDGAELAT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I+G+ + S        GT + V++LFF IPAR NFLKS++VE   + +  +R+A+A+
Sbjct: 124 RIRIAGDTVQSREEAVAPVGTSISVKNLFFNIPARRNFLKSDKVEYRHVLEEFQRVALAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+     S  +++       N  +RI  + G       V + E++    + G+   
Sbjct: 184 PGVAFSMVHNDSEVHQLP----EANLRQRIVHLFGSRMNTRLVPVREETQLAEIDGFICK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F + +  + Y F+N R ++  ++   I TA+   +    YP   L L++    +D+N+
Sbjct: 240 PEFAKKSRGEQYFFVNDRFIRSAYLHHAILTAFEGLLKPDTYPGYFLYLQVPAGAIDINI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-------------------- 339
           HP K+ ++F +   +   +  +++ ++ +  IS      +                    
Sbjct: 300 HPTKTEVKFEDEQSLYAILRSAVKHSLGQFSISPVLDFERDPNLETPYAYQQRDAAVPKV 359

Query: 340 ---KMISSFHQDNAPKTHLP--KYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPT 388
              +  + F +++A +   P  ++A      +++   +           + +        
Sbjct: 360 SVDRTFNPFAEEHALRDSQPAARHAQPAAPREKRPGWEVLYDGGNPEAVSEETREGWTVA 419

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                  +  + A          Q+ + Y++S    GL+++DQ  AH+R+I+E+  +   
Sbjct: 420 SGGSEGALFRANAAEIPEQAGVFQVGRKYLLSHIKSGLLLIDQRRAHQRVIYERFLRSTT 479

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             +  +Q LL P    L   E  ++    E L  +G    R G + + I  +P  + +  
Sbjct: 480 QREPATQALLFPLKPSLNPSEIHILEGLKEALEAMGFGFGRTGEDFVEITGLPVGVPESE 539

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              +L  I+ +            + + I   +A   ++R G  ++  E   L+ ++    
Sbjct: 540 AESILDGIVSDWQRHEDGVHF-SQSDRIAKALAQSLAVRHGTALEQEEQLGLVNDLFGCK 598

Query: 569 NSSQCNHGRPTFIKLKLSDIEKL 591
                  G+PT++ L + ++EK 
Sbjct: 599 EPGTSPFGKPTYVTLSMEELEKK 621


>gi|254443136|ref|ZP_05056612.1| DNA mismatch repair protein MutL [Verrucomicrobiae bacterium
           DG1235]
 gi|198257444|gb|EDY81752.1| DNA mismatch repair protein MutL [Verrucomicrobiae bacterium
           DG1235]
          Length = 617

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 177/610 (29%), Positives = 292/610 (47%), Gaps = 22/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+R L + + NQIAAGE+IERP+  +KEL+ENS+DA S+R+E     GG S  +I DNG 
Sbjct: 3   KVRLLPDHVANQIAAGEVIERPASVVKELVENSIDAGSTRIEVEFRNGGTSLMRIEDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ ++  +A++RH TSKI    D   + T GFRGEALPSI +VS   L +R     +G 
Sbjct: 63  GMSHDDALLALERHATSKIEKVKDLDGLSTMGFRGEALPSIASVSRFQLQTREADTESGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+  VR   M  GT + +  LF T+PAR  FLKS   E+  I   +R  A+A+
Sbjct: 123 EVVIDGGKMLHVRDCGMPQGTRMTITKLFNTVPARRKFLKSVTTESAHIVHCVRLYALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F+      + ++        +   R++++ G+  +N  +E++   + + L G  G 
Sbjct: 183 PEIGFSLLDDGRSLFQ---SPACASLRNRVAEIFGKQMVNKLIEVDAAEDGMRLHGLIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +R + ++   F+N R V++K +   +  +Y   I  GRYPV  L L+IDP +VDVNV
Sbjct: 240 PTLSRSSRHEMLFFVNNRPVENKTLSYALVESYYGHIAKGRYPVAFLFLDIDPERVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-----------TSSVLSKKMISSFHQD 348
           HPAK  IRFR     R F ++++ +A+  +  S            S    K  + +    
Sbjct: 300 HPAKREIRFREEAKARGFAVRTLLEALRAETESYRNIKPVEVKLPSKAEPKIEVEAIQPT 359

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH--YQL 406
                 +     +   +  +L  QE        L  +    +       E        + 
Sbjct: 360 RPKLPPVAAKPEAPAKSVRRLVQQEKSTPKAVALKREVEKPAPAQKVKVEPVPVESKERN 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                     +    T  G+V+++  AA +R+++E++  DF +  I  Q LL  + ++L 
Sbjct: 420 WNYLGWAQGEFATFDTGSGVVLLNVRAAEQRILYERLNSDFAANAIRCQKLLIAQPVELD 479

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
               AL+ E      RLG +   FG N   I   P  L      + +++ +  +   S +
Sbjct: 480 PVSSALLEESLAFFGRLGFEIAPFGRNFFRIEGTPTWLEDGEAEEFVKETLALLRQGSLS 539

Query: 527 YTLQDRIENILATMACYGS--IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
              +     ++A  A   +   R GR+    E+++LL  +           GRP+ I++ 
Sbjct: 540 GEKEGVAVELIAKRA--AAKLRRPGREPSQSEIDQLLERLFACEKPLTDPEGRPSLIEIS 597

Query: 585 LSDIEKLFGR 594
             +I+K F R
Sbjct: 598 TGEIDKRFQR 607


>gi|260583987|ref|ZP_05851735.1| DNA mismatch repair protein HexB [Granulicatella elegans ATCC
           700633]
 gi|260158613|gb|EEW93681.1| DNA mismatch repair protein HexB [Granulicatella elegans ATCC
           700633]
          Length = 662

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 183/652 (28%), Positives = 304/652 (46%), Gaps = 64/652 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LS  + NQIAAGE+IERPS  +KEL+EN++DA S+R+   I   G    +ITDNG 
Sbjct: 3   KIKELSALLTNQIAAGEVIERPSSVVKELLENAVDAGSTRIVIEIEEAGLKLIRITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  ++++RH TSKI   +    I T GFRGEAL SI AVS +T+ +       G 
Sbjct: 63  GMSREDAVLSIRRHTTSKIYSPEQLFRIKTLGFRGEALASITAVSKVTVTTST-GEEVGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ +    I     V    GT +EV DLF+  PARL F+++ Q E   ITDV+ ++++++
Sbjct: 122 QLKVESGTIVEETQVPPLKGTTIEVSDLFYNTPARLKFVRTLQTEIAHITDVVSKISLSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S       +   ++   + NG+  + I+  +G       +  + + ++  + GYT +
Sbjct: 182 PEISIILRNEGN---ELIRTAGNGDLRQAIAGNLGPTNARKMLAFSGEDDDFKVSGYTSL 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +FINGR++++  I   I   Y  T+ +GR+P+ V+ +E+D + VDVNV
Sbjct: 239 PELTRSNRNYISIFINGRSIRNIAISKAIVAGYGSTLMVGRFPITVIDIEMDFQLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HP K  +R      +   I ++I ++I        S   L  K  S+      P      
Sbjct: 299 HPTKQEVRISKEVELSALIQKAIHESIQGVQRIPESLEDLPFKRKSTESTTARPVVEQET 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLP------------------------------SDDP 387
               L   Q  + ++       +                                 +++ 
Sbjct: 359 LNFDLKPVQPSIRVETPSEWIQEDEITSYTSEAVSLEELPLETEESPFKGEISKELTEEI 418

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQ-------------------------NYIISQT 422
                N   E  E          A   +                          Y+ +Q 
Sbjct: 419 PVQITNHNKEGCEDCRIDFHQEKANYWKLSQELDEENFETDFPELHYFGQMHGTYLFAQN 478

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
             GL ++DQHAA ER+ +E  +         SQ+L+ P I++  + E   + E  E +  
Sbjct: 479 EKGLYMIDQHAAQERIKYEIFKVSIGEVAPVSQSLMIPIIMEFSKKEALKLQESLEMIRE 538

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
            GI+ E FG +   I+  P+ + +    +++ +IID ++ S+   T+    +     M+C
Sbjct: 539 FGIEIEPFGTHTFQIQSHPSWIKQGEEKEIIEEIID-LVLSNQKVTVAQLRKATAIMMSC 597

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            GSI++  ++ ++E  +LL ++ K  N   C HGRP  + L   D+EKLF R
Sbjct: 598 KGSIKANHRLTTLEAEQLLVDLAKCKNPYNCPHGRPVLVHLSNKDLEKLFKR 649


>gi|150008991|ref|YP_001303734.1| DNA mismatch repair protein mutL [Parabacteroides distasonis ATCC
           8503]
 gi|298375777|ref|ZP_06985733.1| DNA mismatch repair protein MutL [Bacteroides sp. 3_1_19]
 gi|167017344|sp|A6LEJ8|MUTL_PARD8 RecName: Full=DNA mismatch repair protein mutL
 gi|149937415|gb|ABR44112.1| DNA mismatch repair protein mutL [Parabacteroides distasonis ATCC
           8503]
 gi|298266814|gb|EFI08471.1| DNA mismatch repair protein MutL [Bacteroides sp. 3_1_19]
          Length = 615

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 294/615 (47%), Gaps = 29/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +S ++  I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDHIANQIAAGEVIQRPASVVKELVENAVDAGASNIQVNIKDAGKTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  +D  ++HT GFRGEAL SI AV+H+ L +R      G  
Sbjct: 65  MSETDARMAFERHATSKISTAEDLFSLHTMGFRGEALASIAAVAHIELRTRARGTELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G  + S+ P A N G+I  V++LFF +PAR  FLKS + E   I +   R+A+  P
Sbjct: 125 LSIAGSNLESIEPEACNEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V  +     +  + +          +RI  + G+      + L+ +S+ +T+ G+ G P
Sbjct: 185 QVGMSLYHNDAEIFNLP----ESGLRQRIINIYGKSLNQKLLSLDAQSSMVTISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+NGR ++  +    I  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 241 DSAKKRGALQFFFVNGRYMKHPYFHKAIMQAYEQLIPAGDMPNYFVYFTLDPSSIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K   P    
Sbjct: 301 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKKSEPSTYK 360

Query: 357 --------KYATSLTNTQEKL----------FLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                    Y    T + +K           F  +      +    +D    E      +
Sbjct: 361 APKVQVDSSYNPFDTTSYKKPEFDWSKLYQGFENDRVAVQRESETFEDAPIEELPAEASD 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E    ++   C Q    YI++    GL I+DQH AH R++F++   +    +  SQ +L
Sbjct: 421 PEKLFTEVSNPCYQYKGRYIVTSLKSGLAIIDQHRAHVRILFDQYLSNIRQQQGVSQQVL 480

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI++    E A++    EDL  +G      G +  AI  +PA +   +   L++DI+D
Sbjct: 481 FPEIVEFTAAEAAVLPSLLEDLCFVGFDLSNLGNDNYAINGLPAGIENLDPVNLVKDIVD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
             I++      +   E I  ++A   +IR G+ +   EM+ L+  +    +S+    G+ 
Sbjct: 541 RAIETGCA-VHEKICEAIALSLAKAAAIRPGKSLSLEEMDHLIASLFSCSDSNLTPDGKT 599

Query: 579 TFIKLKLSDIEKLFG 593
               L   ++E+ F 
Sbjct: 600 IISMLTDEELERRFK 614


>gi|312130605|ref|YP_003997945.1| DNA mismatch repair protein mutl [Leadbetterella byssophila DSM
           17132]
 gi|311907151|gb|ADQ17592.1| DNA mismatch repair protein MutL [Leadbetterella byssophila DSM
           17132]
          Length = 602

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 162/597 (27%), Positives = 292/597 (48%), Gaps = 16/597 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ LS+ I NQIAAGE+++RP+  +KEL+ENS+DA +  ++ ++   GK+  Q+ D+G 
Sbjct: 3   KIKLLSDAIANQIAAGEVVQRPASVVKELLENSIDAGALNLKLIVKESGKTLIQVIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  M+ +RH TSKI +  D  NI T GFRGEAL SI AV+ + + +R  ++  G 
Sbjct: 63  GMSPTDARMSFERHATSKIKESIDLFNIRTMGFRGEALASIAAVAQVEMKTRREEDEVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I G ++     +    GT + V++LFF +PAR  FLKS  VE   I +  +R+A+A+
Sbjct: 123 LIRIEGSEVVEQDFIQAAKGTSIAVKNLFFNVPARRKFLKSNPVEMKHIIEEFQRVALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF           +          +RI+  + + + +   +   +++ + + GY G 
Sbjct: 183 PDVSFILYHNDIEVMNLPA----ARLSKRITDALDKSYRDQLAKCEIETDVVKITGYVGK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +      Y F+N R ++  ++   +  A+   IP G +P   L LEI P  +D+N+
Sbjct: 239 PQSAKKTKGDQYFFVNKRFIKSNYLHHAVVNAFESAIPEGTHPFYTLFLEIHPENIDINI 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ I+F N  +I   +  +++++I    ++ S      +  +   +   +       
Sbjct: 299 HPTKTEIKFDNEQLIYAVLRSAVKQSIGVYNLTPSIDFDANINLTSGFEMPVRETPSLKP 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV---------EESEATHYQLGIAC 410
           +  T    ++  +EN  +   +  S     + + +           EE +          
Sbjct: 359 SPRTYVGSEINKKENLDNWEKMFESYSSVVNTEAEQTVLFTSKANREEPDDYQKTDETQI 418

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            Q+HQ YI++Q   GL+I+ Q  A+ER+++EK  +D  S +  SQ LL P+ + L   + 
Sbjct: 419 LQLHQTYILTQVKSGLMIIHQRYAYERVLYEKYLKDMQSAQNVSQQLLFPKTVTLSALDY 478

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           AL  +  + +  +G   E FG N   I  +P+  S ++   L + I++   ++       
Sbjct: 479 ALSQDLLDLIRGIGFSIEEFGTNTYLINGVPSHFSDEDEAVLFKGILEAFKENENHRD-N 537

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            + E +  T+A   + R  + ++  E+  L+ ++ +    S    G+P    L L  
Sbjct: 538 SKKETLARTLAKRYAARQTKTLEKKELTHLIDQLFETAMPSISPDGKPIMRILPLEQ 594


>gi|270295718|ref|ZP_06201918.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273122|gb|EFA18984.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 638

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 288/637 (45%), Gaps = 52/637 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  +KEL+EN++DAE+  +  +I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVVKELVENAIDAEAEEIHVLITDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAEVELKTRPASEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+     V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LLIAGSKVEGQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILTEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F   +  +  + +          +RI  V G+      + ++  +  I + G+   P
Sbjct: 185 EVAFYLYSNDTELFNLPVMP----LRQRIMAVFGKKLNQQLLSVDVNTTMIKISGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETSRKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     +          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKESLGKFSAIPTIDFDTEDMPDIPAFEQARPIEPPKVH 360

Query: 358 YATSLTN--------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           Y T                          E L+    + S  +    ++P   +      
Sbjct: 361 YNTDFNPFKTSSASSYGGGGNYSRPKVEWEGLYSGLEKASRMNEPMEEEPFVEDTVTGTA 420

Query: 398 ESEATHYQL----------------------GIACAQIHQNYIISQTTDGLVIVDQHAAH 435
             E                            G    Q    +I++    GL+++DQH AH
Sbjct: 421 PREEERVPYFQETVPSGVSASFYGNEATVEKGAQHFQFKGRFILTSVKSGLMLIDQHRAH 480

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
            R++F++        +  SQ +L PEII L   E A++    EDL  +G      G  + 
Sbjct: 481 VRVLFDRYMSQIRQKQGVSQGVLFPEIIQLPASEAAVLESILEDLSAVGFDLSPLGGGSY 540

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
           AI  IP+ +   N  +L+R+++   ++       ++    + +T+A   +I  G+ + + 
Sbjct: 541 AINGIPSGIEGLNPVELVRNMVHTAMEKGN-DVKEEVQTILASTLARAAAIVYGQVLSNE 599

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           EM+ L+  +   P+ +    G+     +K  DIEKLF
Sbjct: 600 EMSNLVDNLFACPSPNYTPDGKTVLATIKEDDIEKLF 636


>gi|160890581|ref|ZP_02071584.1| hypothetical protein BACUNI_03024 [Bacteroides uniformis ATCC 8492]
 gi|317479877|ref|ZP_07938994.1| DNA mismatch repair protein MutL [Bacteroides sp. 4_1_36]
 gi|156859580|gb|EDO53011.1| hypothetical protein BACUNI_03024 [Bacteroides uniformis ATCC 8492]
 gi|316903951|gb|EFV25788.1| DNA mismatch repair protein MutL [Bacteroides sp. 4_1_36]
          Length = 638

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 165/637 (25%), Positives = 288/637 (45%), Gaps = 52/637 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  +KEL+EN++DAE+  +  +I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVVKELVENAIDAEAEEIHVLITDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAEVELKTRPASEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+     V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LLIAGSKVEGQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILTEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F   +  +  + +          +RI  V G+      + ++  +  I + G+   P
Sbjct: 185 EVAFYLYSNDTELFNLPVMP----LRQRIMAVFGKKLNQQLLSVDVNTTMIKISGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETSRKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     +          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKESLGKFSAIPTIDFDTEDMPDIPAFEQARPIEPPKVH 360

Query: 358 YATSLTN--------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           Y T                          E L+    + S  +    ++P   +      
Sbjct: 361 YNTDFNPFKTSSASSYGGGGNYSRPKVEWEGLYSGLEKASRMNEPMEEEPFVEDTVTGTA 420

Query: 398 ESEATHYQL----------------------GIACAQIHQNYIISQTTDGLVIVDQHAAH 435
             E                            G    Q    +I++    GL+++DQH AH
Sbjct: 421 PREEERVPYFQETVPSGASASFYGNEATVEKGAQHFQFKGRFILTSVKSGLMLIDQHRAH 480

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
            R++F++        +  SQ +L PEII L   E A++    EDL  +G      G  + 
Sbjct: 481 VRVLFDRYMSQIRQKQGVSQGVLFPEIIQLPASEAAVLESILEDLSAVGFDLSPLGGGSY 540

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
           AI  IP+ +   N  +L+R+++   ++       ++    + +T+A   +I  G+ + + 
Sbjct: 541 AINGIPSGIEGLNPVELVRNMVHTAMEKGN-DVKEEVQTILASTLARAAAIVYGQVLSNE 599

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           EM+ L+  +   P+ +    G+     +K  DIEKLF
Sbjct: 600 EMSNLVDNLFACPSPNYTPDGKTVLATIKEDDIEKLF 636


>gi|304382086|ref|ZP_07364597.1| DNA mismatch repair protein MutL [Prevotella marshii DSM 16973]
 gi|304336684|gb|EFM02909.1| DNA mismatch repair protein MutL [Prevotella marshii DSM 16973]
          Length = 604

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 156/602 (25%), Positives = 277/602 (46%), Gaps = 18/602 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA +  +   +   G++  Q+ D+G G
Sbjct: 5   IQLLPDTVANQIAAGEVIQRPASVIKELVENAVDAGAETIHVSVTDAGRTSIQVIDDGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   +HT GFRGEAL SI AV+ + L +R      G +
Sbjct: 65  MSDTDARLSFERHATSKIRKADDLFALHTMGFRGEALASIAAVAQIELRTRLRGTQLGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +++SG + +   PV+   GT + V +LFF +PAR  FLKS   E + IT V  R+ +  P
Sbjct: 125 LSVSGFQFTGQEPVSCAEGTNITVENLFFNVPARRKFLKSNATELSHITTVFERIVLVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FT  +  +  + +      G   +RI  + G       + +   +    + G+ G P
Sbjct: 185 HIRFTLHSNGTELFNL----AQGTTRQRIIDIFGRKLNQELLPIKADTQLCRISGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + + F+NGR ++  +    + +AY   +P G      +  +++P+ +DVN+H
Sbjct: 241 ESARKRGARQFFFVNGRYMKHPYFAKAVMSAYERLVPAGEQIPYFIYFDVNPQDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------HQDNAPKT 353
           P K+ I+F N   I   +  ++++   K     S     +            +    PK 
Sbjct: 301 PTKTEIKFENEQPIWQILSAAVRETFGKFNDVPSIDFDTQGKPDIPVFNPLPNHATTPKV 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +   +             Q               T ++     +  E T   L    + +
Sbjct: 361 NYNPFYNPFKEQAAHRRTQAPEQWEQIYEGLKGGTEAQHTLFPQAEERTDENLISEKSPV 420

Query: 414 H----QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
           H      YI++    GL+I+DQH AH R+++EK  Q        +Q +L PE +     E
Sbjct: 421 HYQYKGQYIMTAVKSGLMIIDQHRAHIRILYEKYMQQLTHHSGHAQQVLFPETVSFPPSE 480

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
            AL+     ++  +G      G    AI  IPA +   N+  L+ +++   I+  T    
Sbjct: 481 AALLDRILPEMTGMGFDLTDLGGGTYAINGIPADIEGLNVVSLINEMVSTAIEQGT-DIR 539

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           +D   ++  ++A   +I  G+ + + EM  ++  +    N +    G+P    L+  +IE
Sbjct: 540 EDINHSLAMSLARQAAIPQGQVLNNDEMEAIVNALFACSNVNYTPTGKPVLCILEQKNIE 599

Query: 590 KL 591
           ++
Sbjct: 600 QM 601


>gi|255014822|ref|ZP_05286948.1| DNA mismatch repair protein mutL [Bacteroides sp. 2_1_7]
          Length = 615

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 175/615 (28%), Positives = 294/615 (47%), Gaps = 29/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +S ++  I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDHIANQIAAGEVIQRPASVVKELVENAVDAGASNIQVNIKDAGKTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  +D  ++HT GFRGEAL SI AV+H+ L +R      G  
Sbjct: 65  MSETDARMAFERHATSKISTAEDLFSLHTMGFRGEALASIAAVAHIELRTRARGTELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G  + S+ P A N G+I  V++LFF +PAR  FLKS + E   I +   R+A+  P
Sbjct: 125 LSIAGSNLESIEPEACNEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V  +     +  + +          +RI  + G+      + L+ +S+ +T+ G+ G P
Sbjct: 185 QVGMSLYHNDAEIFNLP----ESGLRQRIINIYGKSLNQKLLSLDAQSSMVTISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      + F+NGR ++  +    I  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 241 DSAKKRGALQFFFVNGRYMKHPYFHKAIMQAYEQLIPAGDMPNYFVYFTLDPSSIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K   P    
Sbjct: 301 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKKSEPSTYK 360

Query: 357 --------KYATSLTNTQEKL----------FLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                    Y    T + +K           F  +   +  +    +D    E       
Sbjct: 361 APKVQVDSSYNPFDTTSYKKPEFDWSKLYQGFENDRVAAQLESESFEDAPIEELPAEASN 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E    ++   C Q    YI++    GL I+DQH AH R++F++   +    +  SQ +L
Sbjct: 421 PENLFAEVSNPCYQYKGRYIVTSLKSGLAIIDQHRAHVRILFDQYLSNIRQQQGVSQQVL 480

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            PEI++    E A++    EDL  +G      G +  AI  +PA +   +   L++DI+D
Sbjct: 481 FPEIVEFTAAEAAVLPSLLEDLCFVGFDLSNLGNDNYAINGLPAGIENLDPVNLVKDIVD 540

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
             I++      +   E I  ++A   +IR G+ +   EM+ L+  +    +S+    G+ 
Sbjct: 541 RAIETGCA-VHEKICEAIALSLAKAAAIRPGKSLSLEEMDHLIASLFSCSDSNLTPDGKT 599

Query: 579 TFIKLKLSDIEKLFG 593
               L   ++E+ F 
Sbjct: 600 IISMLTDEELERRFK 614


>gi|325955049|ref|YP_004238709.1| DNA mismatch repair protein mutL [Weeksella virosa DSM 16922]
 gi|323437667|gb|ADX68131.1| DNA mismatch repair protein mutL [Weeksella virosa DSM 16922]
          Length = 593

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/597 (28%), Positives = 297/597 (49%), Gaps = 18/597 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RPS  +KEL+EN++DA +S ++ +I   G+S  QI D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPSSVVKELMENAVDAGASEIKVLIKDAGRSLIQIIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  ++ MA +RH TSKI   +D  +I T GFRGEAL SI AV+ +   ++      G+ 
Sbjct: 65  MSMTDVRMAFERHATSKIRTTEDIFHITTKGFRGEALASIAAVAQVEAKTKLTDETLGSL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G  +    PV    GT V V++LF+ +PAR NFLKS QVE   I D  +R+A+A+ 
Sbjct: 125 LVIEGGDVRVQEPVVTPSGTSVSVKNLFYNVPARRNFLKSNQVEFRHIQDEFQRIALAHE 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF      S+ Y +      GN  +RI Q+ G+      +E+ E++  + ++GY G P
Sbjct: 185 GISFQLIHNNSDVYYLKA----GNLKQRIVQIFGKKIETQLLEILEETEIVNIKGYVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              + +  + + F+N R +++ ++   I  A+   +P G  P   L LE+DP ++D+N+H
Sbjct: 241 DSAKKSRGEQFFFVNNRFIKNAYLHKAITDAFEGLLPNGYTPSYFLYLELDPSKIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF--HQDNAPKTHLPKY 358
           P K+ I+F   T I   +  +I+ ++ +  +  S    +    +F  H  + P       
Sbjct: 301 PTKTEIKFEEDTKIFQLLRSAIKHSLGQFNVVPSLDFDQDPRWAFINHPKDKPIVEPKIM 360

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED----NDPVEESEATHYQLGIACAQIH 414
            +S  N  +  F Q     T      D    SE     N P E       +L     Q +
Sbjct: 361 VSSDYNPFDNPFTQTKPTPTTIQANLDFYRESEILTQENTPTEALFELDSELPTQILQWN 420

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y++ +    L+++DQH AH+++++E+  +      +    LL P  ++        I 
Sbjct: 421 LRYLVVEHLGELLVIDQHRAHQKVLYERFLRTKTDHALAQ-QLLFPIELEASPVNIERIK 479

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
             +++L   G     F    I +  IP  + + ++  +  D I E+ D S     +    
Sbjct: 480 TIEKELILYGFDLC-FREEMILVNAIPVDVDQSHVAGIFADFIAEL-DFSQGVDFESSFA 537

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            I A  A   +I+ G  ++  +M  L++++      +   +G+P FIK+ L +IEK 
Sbjct: 538 KIFAKNA---AIKKGEILKKEQMVTLVQQLLMLDYPNFTPYGKPVFIKMNLQEIEKK 591


>gi|255011720|ref|ZP_05283846.1| putative DNA mismatch repair protein [Bacteroides fragilis 3_1_12]
 gi|313149555|ref|ZP_07811748.1| DNA mismatch repair protein mutL [Bacteroides fragilis 3_1_12]
 gi|313138322|gb|EFR55682.1| DNA mismatch repair protein mutL [Bacteroides fragilis 3_1_12]
          Length = 626

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 167/627 (26%), Positives = 293/627 (46%), Gaps = 41/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQNIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G K+ S   V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 IIIAGSKVESQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPACH----LRQRILSIFGKKLNQQLLSVEVNTTMVKVSGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F Q+  P      
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFNAVPSIDFDTEDMPDIPAFEQNLPPAPPKVH 360

Query: 358 YATSLTN------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           + +                        E L+    + S  +   ++     E+   +EE 
Sbjct: 361 FNSDFNPFKPSVPSSGGGNYSRPKVDWEDLYGGLEKASKMNQPFAEPDPEPEEFAVIEEE 420

Query: 400 -------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                        E+   + G    Q    +I++    GL+++DQH AH R++F++ R  
Sbjct: 421 SIVTAAPATLYAGESAIMEKGTQHLQFKGRFILTSVKSGLMLIDQHRAHVRVLFDRYRAQ 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +  SQ +L PEI+ L   E A++ +  +DL  +G      G  + AI  +P+ +  
Sbjct: 481 IQQKQGFSQGVLFPEILQLPASEAAVLQDIMDDLSAVGFDLSDLGGGSYAINGVPSGIDG 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
            N   L+R ++   ++       ++  + +  T+A   +I  G+ + + EM  L+  +  
Sbjct: 541 LNPVDLVRSMLHTAMEKGN-DVKEEIQDILALTLARAAAIVYGQVLSNEEMVSLVDNLFA 599

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            P+ +    GR     +K  +I+KLF 
Sbjct: 600 CPSPNYTPDGRVVLTTIKEEEIDKLFR 626


>gi|281421752|ref|ZP_06252751.1| DNA mismatch repair protein MutL [Prevotella copri DSM 18205]
 gi|281404247|gb|EFB34927.1| DNA mismatch repair protein MutL [Prevotella copri DSM 18205]
          Length = 622

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 163/625 (26%), Positives = 290/625 (46%), Gaps = 41/625 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA +  +   +   G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENAVDAGARNIHVTVTDAGRTNIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI   DD   + T GFRGEAL SI AV+ + L SR   +  G  
Sbjct: 65  MSETDARLAFERHSTSKIRKADDLFALRTMGFRGEALASIAAVAQVELKSRQATDEIGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ISG +     P +   G++  V ++F+ +PAR  FLKS   E N I     R+A+  P
Sbjct: 125 IRISGSRYEKQEPCSCAVGSLFSVSNIFYNVPARRKFLKSNSTELNNILTAFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT  +  +  + +       N  +RI  V G+ F    + +N ++    + G+ G P
Sbjct: 185 QITFTLHSNGTEVFNLRA----ANLRQRILDVFGKRFNQELLPVNVETTMCKVSGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      + F+NGR ++  +    +  AY   +P G      L  ++DP+ +DVN+H
Sbjct: 241 ESARKKGVHQFFFVNGRYMKHPYFNKAVMAAYDRLVPQGEQVPYFLYFDVDPKDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKT---- 353
           P K+ I+F N   I   +  S++++I       +       K  I  ++ + +       
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESIGMFNDVPTIDFDTEDKPDIPVYNPEMSTAAAPKI 360

Query: 354 ------------------------HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                                    +PK    +    E+L+ +  +   +         +
Sbjct: 361 SLNPGYNPFKSSSSTGAVPMGSGFSVPKSKPQVDEKWEQLY-EGLKNQDDVQGMEQTMVF 419

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S+D+      ++   +   A  Q    YI++    GL+I+DQH AH R++FE+  +    
Sbjct: 420 SDDSSRDNTPDSIIAEKSPAHYQYKGKYIMTAVKSGLMIIDQHRAHVRVLFEQYLRQLAD 479

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
               SQ +L PE++     E  +  +   ++  +G + E  G  + A+  +P  L   N 
Sbjct: 480 RTFHSQKVLFPEVVQFPMSEKVIFEKILPEMESMGFELEDLGGGSYAVNSVPGGLEGLNP 539

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
            +L++D++   ++   +    D I   LA ++A   +I  G+ + + EM  L+ ++    
Sbjct: 540 LKLVQDMVSSAVEKGVSAI--DEINQTLALSLARQAAIPQGQILSNEEMEGLVNDLFACQ 597

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFG 593
           N +    G+     L+  +IE L G
Sbjct: 598 NVNYTPDGKSVLCILRQQEIEHLLG 622


>gi|331001790|ref|ZP_08325312.1| hypothetical protein HMPREF0491_00174 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412764|gb|EGG92147.1| hypothetical protein HMPREF0491_00174 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 661

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 168/662 (25%), Positives = 290/662 (43%), Gaps = 74/662 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  I++IAAGE++ERP+  +KEL+ENS+DA SS +   I  GG    +ITDNG G
Sbjct: 2   INILDKGTIDKIAAGEVVERPASIVKELLENSIDAGSSSITVEIKNGGIDLIRITDNGCG 61

Query: 63  MTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+  A  RH TSKI  D    +I + GFRGEAL SI AVS   ++++     TG +
Sbjct: 62  IDAKEVKKAFLRHATSKIISDKDLISIKSLGFRGEALSSIAAVSRCEMITKTRDELTGVR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             + G        +    GT + +RD+F+  PAR  FLK+   E   I++++ +MA++  
Sbjct: 122 YYMEGGVEVEYEEIGAPDGTSIIIRDIFYNTPARRKFLKTASTEGAHISELVEKMAMSNT 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F F +    + + N    NGN  + I Q+ G++       ++ + + I + G    P
Sbjct: 182 GIAFKFISNNQIKLQTN---GNGNLKDIIYQLYGKEISKALCVIDYEKDGIKIGGVIARP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD---- 296
              R   N   +F+NGR ++D  I   I   + + +   +YP   L  +I+   V+    
Sbjct: 239 EVTRSTRNLENIFVNGRYIKDNIISKAIEDGFGDRLMQHQYPFCALSFDIEGVDVNVHPR 298

Query: 297 ------------VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK---- 340
                        N         F+  + +R   +        K  I+T      +    
Sbjct: 299 KMEVRFSDRNIVYNAAKEAVEDIFKTQSAVREVPVGKNTSNEKKTFINTPEPFENRRRDI 358

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN----------RLSTNDLLPSDDPTYS 390
             S   +D+  +  +PK  +        LF ++N          R        + + TY+
Sbjct: 359 SFSKPDKDDEIQWTVPKETSYNPQNDSVLFNEDNSKNIYFNNSIRQGEYADSKATEKTYT 418

Query: 391 EDNDPVEES--------------------------------------EATHYQLGIACAQ 412
           + N+ +  +                                      +    +      Q
Sbjct: 419 DINENISYTGIKTENNTENIKTTKEADIPTDVETSANKEKASQISFFDKESKKYIKVVGQ 478

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +   Y I Q  + + I+DQHAAHE++++E++ ++  ++KIT+Q +  P I+ L + E  +
Sbjct: 479 VFDTYWIVQLENDMYIIDQHAAHEKVMYERLLRESKNSKITAQMINPPIIVTLTDVEQDV 538

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + +H ++    G   E FG     I  IP I       +L  +++ +  +        + 
Sbjct: 539 LNKHLDEFKNAGFDIEEFGGKEYKINSIPNIFPSIPKAELFNEMLSDSTNYDIISP-SEI 597

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           I    A+MAC  +I+   ++  +E N L  E+    N   C HGRPT IK+   +IEK F
Sbjct: 598 ILAKTASMACKAAIKGNMRISLMEANELFDELLSLKNPYNCPHGRPTIIKMSKYEIEKKF 657

Query: 593 GR 594
            R
Sbjct: 658 KR 659


>gi|325851857|ref|ZP_08171022.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|327312556|ref|YP_004327993.1| DNA mismatch repair protein [Prevotella denticola F0289]
 gi|325484699|gb|EGC87612.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           denticola CRIS 18C-A]
 gi|326946300|gb|AEA22185.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           denticola F0289]
          Length = 617

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 166/617 (26%), Positives = 303/617 (49%), Gaps = 33/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  +KEL+EN++DAE+  +  ++A  G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVVKELVENAIDAEAKHINVLVADAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  ++HT GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFSLHTMGFRGEALASIAAVAQIELKTRMESEELGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G + +   P +   G+   V +LFF +PAR  FLKS   E N I +   R+ + +P
Sbjct: 125 LSIAGSRFTGQEPCSCPVGSNFLVENLFFNVPARRKFLKSNTTELNNIINAFERIVLVWP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT  +  +  + +       N+ +RI ++ G+    + + ++  ++   + G+ G P
Sbjct: 185 QIAFTLHSNGTELFSLRAC----NYRQRIVEIFGKRLNQDLLPIDVDTSLCRIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R  A   Y F+N R ++  +    + TA+   IP G      L  E+    +DVN+H
Sbjct: 241 ESARKKAPHQYFFVNERYMKHPYFHKAVLTAFDRLIPQGEQVPYFLYFEVPAENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------KMISSFHQDNAPKTH 354
           P K+ I+F N   I   ++ ++++A+ +     S            + S   +  APK  
Sbjct: 301 PTKTEIKFENEQAIWQILLAAVKEAVGRFNDIPSIDFDTEGKPDIPVFSPNGETTAPKID 360

Query: 355 L--------PKYATSLTNTQEKLFL---QENRLSTNDLLPSDDPTYSEDNDPV------- 396
                    P    +     E+L+     E       L    D T + D++ +       
Sbjct: 361 FNPSYNPFRPTSRATAPKGWEELYPGPDAETETRQPQLFGQQDTTGTTDSETIVSSVATQ 420

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
             +E+       +  Q    YI++    GL+I+DQH AH R+++E   +  +  K  SQ 
Sbjct: 421 PAAESMIEDQAPSHYQYKGCYIMTAVKSGLMIIDQHRAHIRILYEAYLRQLSEHKAHSQK 480

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +L PE++     +   +     ++  +G + +  G  + A+  +PA +   N+  L+ ++
Sbjct: 481 VLFPEMVQFAAADQLALDRILPEMAEMGFQLDSLGGGSYAVNGVPAGIEGLNVVTLINEM 540

Query: 517 IDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           +   +DS T+  +++ I+  LA ++A   +I  G+ + + EM+ ++ E+    N +    
Sbjct: 541 VASAVDSGTS--VKEDIDRTLALSLARNAAIPQGQVLGNAEMDNIVNELFACTNVNYTPS 598

Query: 576 GRPTFIKLKLSDIEKLF 592
           G P    LK  DIE LF
Sbjct: 599 GEPVIAILKQQDIEHLF 615


>gi|332291112|ref|YP_004429721.1| DNA mismatch repair protein MutL [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169198|gb|AEE18453.1| DNA mismatch repair protein MutL [Krokinobacter diaphorus 4H-3-7-5]
          Length = 624

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 160/625 (25%), Positives = 298/625 (47%), Gaps = 39/625 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +S ++ ++   GK+  QI D+G G
Sbjct: 5   IKLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGASTIKLIVKDAGKTLIQIIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI  +DD  N++T GFRGEAL SI AV+H+ L +RP     G +
Sbjct: 65  MSDTDARMSFERHATSKITTADDLFNLNTKGFRGEALASIAAVAHVELKTRPEGAEVGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI++    A   GT + V++LFF IPAR NFLKS  VE   + D  +R+++A+P
Sbjct: 125 IEIEGSKINAQEVCATPKGTSLSVKNLFFNIPARRNFLKSNSVELRHVIDEFQRVSLAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F     +   +++      GN  +RI  + G       V + E+++ +T+ G+   P
Sbjct: 185 DIAFAMYHNEGELFQLP----QGNLKQRIVAIFGGKTNEKLVPVQEETDILTIDGFVVKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F++    + + F+N R ++  ++   +  A+   +P        L L++DP  +D+N+H
Sbjct: 241 EFSKKTRGEQFFFVNDRFIKSAYLNHAVTAAFDGLLPERARASYFLYLKVDPSTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-------- 352
           P K+ I+F +   +   +  +I+ ++ +  I+     ++        D   K        
Sbjct: 301 PTKTEIKFDDEHALYAMLRSTIKHSLGQFSIAPVLDFNRDSELDTPYDYKNKGIVTPKIE 360

Query: 353 -----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                      A      Q   F + +     ++    +   +  +    E E +   + 
Sbjct: 361 VDRTFNPFENVAPPKRGAQRPEFEKPSAAGWENMYEGMESQATAVSTMTFEKEVSTPNMF 420

Query: 408 I-------------------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                               +  Q++  YI+S    G+VI+DQH AH+R+++E+  ++  
Sbjct: 421 ESGLNGAKHSTPTSSSQNESSTYQLNNKYIVSTIKSGMVIIDQHRAHQRVLYEEFLRNIT 480

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
             +  SQ LL P  +     E ALI E    L   G        + + I  IP  +++  
Sbjct: 481 VKESVSQQLLFPLTLAYSTTELALIEELKAGLENTGFIFGTISGDILEINGIPTSITESQ 540

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
           +P ++  ++ ++ ++    +   + + +  +MA   +++ G  + S     L+  +    
Sbjct: 541 VPVVIDQLLSDL-ENEVPDSGFSQTDTLAKSMAKSLAVKGGVSLDSASREHLVNSLFACK 599

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFG 593
             S     R TF+ +   D+E+ F 
Sbjct: 600 EPSISPTNRKTFVTMTSEDLERKFK 624


>gi|222529488|ref|YP_002573370.1| DNA mismatch repair protein MutL [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456335|gb|ACM60597.1| DNA mismatch repair protein MutL [Caldicellulosiruptor bescii DSM
           6725]
          Length = 589

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/593 (28%), Positives = 298/593 (50%), Gaps = 14/593 (2%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL E++ + +AAGE++ERP+  +KEL+ENS+DA ++ ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLPEQLTHILAAGEVVERPASCLKELLENSIDAGANLIDVKIEKGGMKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++I    +RH TSKI   +D  +I T GFRGEAL +I +VS +TL+S+  +   G  + 
Sbjct: 66  PDDIEYVFERHTTSKIKSFEDIFSIKTMGFRGEALCAISSVSKVTLVSKHLEEEQGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +V+ ++AIA+P++
Sbjct: 126 VEGGKVLSKSFCPFKEGTRIVVEDIFYNTPARLKFLKSPTTEQKYCLEVVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESAIGSIFGIEIVKNLVEFSLEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K + S I  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLLSSCIDEAFKNSVITGRFPIVFLFIQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  I+FR+   + N I ++I  ++  + +   + LSK  +   +   A +      + +L
Sbjct: 303 KLEIKFRDERFVYNTIYKAITDSLKSEKMIPKADLSKANVG--NDAVAERKQTGVLSDNL 360

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            N    +  ++           +     +        E                YII Q 
Sbjct: 361 KNDISLVISEQPNFFGMFSRSEEIVIEQQGF------ENFDAGNYKIVGYAFDTYIIVQG 414

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L ++DQHA HER +FE  +    S+ + SQ L++P I+ +       ++ +     +
Sbjct: 415 DDSLYLIDQHAVHERRLFEDFKSQIYSSNVQSQVLVSPVIVQIPSSRKEFVISNRAIFQK 474

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILATMA 541
           +G + E FG N I +R  PAIL++      L DII+ I +      +L    E++L  +A
Sbjct: 475 MGFEIEDFGKNEILVRTWPAILTENIEKMFLIDIIEMIYEQMVEDKSLVGISEDLLKRIA 534

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +++   K+  +E   ++  +        C HGRP  +++   +IEK+F R
Sbjct: 535 CRAAVKGNSKISDLEKKEIVELVLIKKEIFHCPHGRPVVVEISKREIEKMFKR 587


>gi|86133303|ref|ZP_01051885.1| DNA mismatch repair protein MutL [Polaribacter sp. MED152]
 gi|85820166|gb|EAQ41313.1| DNA mismatch repair protein MutL [Polaribacter sp. MED152]
          Length = 604

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 156/604 (25%), Positives = 299/604 (49%), Gaps = 20/604 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA ++ ++ ++   GK+  Q+ D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGATSIKLLLKDAGKTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  M  +RH TSKI  ++D  N+ T GFRGEAL SI A++H+ L ++      G  
Sbjct: 65  MSATDARMCFERHATSKIQKAEDLFNLCTKGFRGEALASIAAIAHVELKTKQENEELGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G  + S   ++   G  + V++LF+ IPAR NFLKS+ VET  + D  +R+A+A+P
Sbjct: 125 LKIEGSTVISQDFISTGKGASIAVKNLFYNIPARRNFLKSDTVETRHVIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F      +  Y +       N  +RI  V G       V +NE+++ + ++G+   P
Sbjct: 185 SIAFLLHHNNNEVYHLKS----SNLRQRIVAVFGAKMNEKLVPINEQTDILDIKGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F +    + + F+N R ++  ++   +  A+   +  G +P   L L++    +D+N+H
Sbjct: 241 EFAKRKRGEQFFFVNDRFIKSSYLNHAVVNAFDGLLEQGSHPSYFLYLKVPANTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM--ISSFHQDNAP-KTHLPK 357
           P K+ I+F N   +   +  +++ ++ +  ++     ++     +S+HQ+ +  K+  PK
Sbjct: 301 PTKTEIKFDNEKALYAMLRATVKHSLGQYNVAPVLDFNRDANLDTSYHQNVSSVKSSTPK 360

Query: 358 YATSLTNTQEK---------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                                + +E +    + L S   T  E     E           
Sbjct: 361 ITVDPDFNPFNEIKQKEIHFPYKREQKSQDWETLYSSVTTLDEQKQD-ELFTDQQEVKTQ 419

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              QI + Y++S    G+V++ Q  AH+R+++E+  +     +  SQ LL P  I     
Sbjct: 420 KTFQIQRKYVMSLIKSGVVLIHQSLAHQRILYEEFLESITVKEANSQQLLFPVKISFSSA 479

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E  +I     +L   G   + F  +++ I+ IP  +++  I  +L +++++ ++     T
Sbjct: 480 EIEMIYTIKSELENAGFSFDEFTKDSVTIKGIPVSVTESKITIILEELLND-MNLEVPDT 538

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
                + +  + A   SI++G ++   E   L+  +      S    G+ TF  L L++I
Sbjct: 539 SFSHFDIMAKSFAKTLSIKTGTQLAEKEQESLVNNLFSCKEPSISPFGKSTFKTLTLNEI 598

Query: 589 EKLF 592
           + LF
Sbjct: 599 DHLF 602


>gi|299142778|ref|ZP_07035907.1| DNA mismatch repair protein MutL [Prevotella oris C735]
 gi|298575807|gb|EFI47684.1| DNA mismatch repair protein MutL [Prevotella oris C735]
          Length = 611

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 167/611 (27%), Positives = 290/611 (47%), Gaps = 28/611 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  +KEL+EN++DA +  ++  +   GK+  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVVKELVENAVDAGAKNIQVQVIDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   + T GFRGEAL SI AV+ + L +R  ++  G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFALRTMGFRGEALASIAAVAQVELKTRQEKDEIGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G +     P + + G    +  LF+ +PAR  FLKS   E N I     R+A+ YP
Sbjct: 125 LSIAGSRFVGQEPCSCSVGCSFSINSLFYNVPARRKFLKSNSTELNNIITAFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF+  +  +  + +      G   +RI  + G+      + +N  +    + G+ G P
Sbjct: 185 DISFSLHSNGTELFNLKA----GVLRQRIIDIFGKRLNQELLSVNVDTTMCRINGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y+F+NGR ++  +    +  A+   +P G      L  E+ P  +DVN+H
Sbjct: 241 QSARKKGAHQYLFVNGRYMKHPYFNKAVTAAFERLVPTGEQVPYFLYFEVAPEDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++A+       S       +  I  ++   +      K
Sbjct: 301 PTKTEIKFENEVPIWQILSAAVKEAVGMFNDIPSIDFDTEGRPDIPVYNPGESVTAPTLK 360

Query: 358 YATSLT---------------NTQEKLF-LQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
           Y                    N  ++L+   +++ S    L S   T  E  D ++ +E 
Sbjct: 361 YNPDYNPFHSSAGSSRSSSASNRWDELYQAAQHQPSQETELFSSKMTSPETTDELQSTEN 420

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
              +   A  Q    YI++    GL+I+DQH AH R++F++ ++     +  SQ +L PE
Sbjct: 421 IIAEKSPAHYQYKGRYIMTAVKSGLMIIDQHRAHVRILFDRYQEQLKCREAASQKVLFPE 480

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
            +     E   + +   +L  LG      G ++ A++ IPA L   +   LL D+I    
Sbjct: 481 NVHFSASEEVTLTKIMPELQGLGFDFNAMGGSSYAVQAIPAGLEGLDFSSLLHDMIASAQ 540

Query: 522 DSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
           +  T   ++D I + LA TMA   +I  G+ + + EM  +   +  + N +    G+   
Sbjct: 541 EKPTA--IRDEISSALALTMARKAAIPQGQVLNNDEMENIFNMLFASSNPNYTPDGKNIL 598

Query: 581 IKLKLSDIEKL 591
             LK ++IE L
Sbjct: 599 CILKQNEIEHL 609


>gi|294672827|ref|YP_003573443.1| DNA mismatch repair protein MutL [Prevotella ruminicola 23]
 gi|294471669|gb|ADE81058.1| DNA mismatch repair protein MutL [Prevotella ruminicola 23]
          Length = 612

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 167/616 (27%), Positives = 288/616 (46%), Gaps = 32/616 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+ENS+DA +  +  ++   G++  Q+ D+G G
Sbjct: 4   IHLLPDSVANQIAAGEVIQRPASVIKELVENSVDAGAKTIHVIVVDAGRTSIQVIDDGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKIS  DD   +HT GFRGEAL SI AV+ + L +R  ++  G +
Sbjct: 64  MSETDARLAFERHATSKISQADDLFALHTMGFRGEALASIAAVAQVELQTRRQEDEIGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G K++   PV+   G+  +V +LFF +PAR  FLK+   E N I     R+ + YP
Sbjct: 124 VSIAGSKVTRQEPVSCPVGSNFKVDNLFFNVPARRKFLKTNATELNNILTAFERIVLVYP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FT          +      G+  +RI+ V G+ +  + V +   +   T+ G+ G P
Sbjct: 184 DIHFTLHNNGVEMLNLRA----GSVRQRIADVFGKQYNQDLVPVEVHTAMCTVSGFVGKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY   +P G      L +E++P ++DVN+H
Sbjct: 240 EAARKKTGCDYFFVNGRFMKHPYFHKAVMKAYDRLVPEGMAVPYFLYIEVEPGEIDVNIH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS----------------- 343
           P K+ I+F N   I   +  +++  I K     S     +                    
Sbjct: 300 PTKTEIKFENEQAIWQILSAAVRDGIGKYCEVPSIDFDTQGQPDIPLFDSNSNTFQDSFA 359

Query: 344 ----SFHQDNAP-KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
               +++ D  P K      ++S+ N  E L+    + S  +        + ++N    +
Sbjct: 360 APKVNYNPDYNPFKQSGGSSSSSVPNQWESLYQGVEQGSFREEPVQQPSFFDDENVVAPQ 419

Query: 399 SEATH-YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           S      +   A  Q    Y+++    GL+I+DQH A  R+++++     +   I++Q +
Sbjct: 420 SATEILSEKSPAHYQYKGKYLMTAVKSGLMIIDQHRASIRVLYDRYLNQHDGHVISTQKM 479

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L PE I     E   + +   +L   G      G N  A+  IPA L   N   LL D++
Sbjct: 480 LFPETITFSPSEGVTMQQLLPELTAYGFDLSDLGGNTYAVNGIPAGLEGINPQNLLHDML 539

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
                +S   +++     +   +A   +I  G+ + + E+  ++ ++    N +    G+
Sbjct: 540 S---STSAADSIEAIHTALALRLAQSAAIPYGQILTNDEIESIINDLFSCSNVNYTPDGK 596

Query: 578 PTFIKLKLSDIEKLFG 593
                L   DIE L G
Sbjct: 597 AILCILPQGDIEHLLG 612


>gi|253567242|ref|ZP_04844692.1| DNA mismatch repair protein mutL [Bacteroides sp. 3_2_5]
 gi|265767840|ref|ZP_06095372.1| DNA mismatch repair protein mutL [Bacteroides sp. 2_1_16]
 gi|251944073|gb|EES84592.1| DNA mismatch repair protein mutL [Bacteroides sp. 3_2_5]
 gi|263252512|gb|EEZ24040.1| DNA mismatch repair protein mutL [Bacteroides sp. 2_1_16]
 gi|301164811|emb|CBW24371.1| putative DNA mismatch repair protein [Bacteroides fragilis 638R]
          Length = 625

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/626 (27%), Positives = 292/626 (46%), Gaps = 40/626 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQNIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G K+ S   V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 IIIAGSKVESQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  V G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPACH----LRQRILSVFGKKLNQQLLSVEVNTTMVKVSGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  SI++++ K     S          I +F Q+  P      
Sbjct: 301 PTKTEIKFENEQAIWQILSASIKESLGKFNAVPSIDFDTEDMPDIPAFEQNLPPAPPKVH 360

Query: 358 YATSLTN-----------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES- 399
           + +                       E L+    + S  +   SD    SE+   +EE  
Sbjct: 361 FNSDFNPFKPSSSSGGGNYSRPKVDWEDLYGGLEKASKMNQPFSDSDPESEEFAVIEEES 420

Query: 400 ------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                       E    + G    Q    +I++    GL+++DQH AH R++F++ R   
Sbjct: 421 IATAAPETLYAGEPAVIEKGTQHLQFKGRFILTSVKSGLMLIDQHRAHIRVLFDRYRAQI 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
              +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  +P+ +   
Sbjct: 481 QQKQGFSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSDLGGGSYAINGVPSGIDGL 540

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           N   L+R ++   ++       ++  + +  T+A   +I  G+ + + EM  L+  +   
Sbjct: 541 NPVDLVRSMLHTAMEKGN-DVKEEIQDILALTLARAAAIVYGQVLSNEEMVSLVDNLFAC 599

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFG 593
           P+ +    GR     +K  +I+KLF 
Sbjct: 600 PSPNYTPDGRVVLTTIKEEEIDKLFR 625


>gi|312622278|ref|YP_004023891.1| DNA mismatch repair protein mutl [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202745|gb|ADQ46072.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 589

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/596 (29%), Positives = 300/596 (50%), Gaps = 20/596 (3%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL E++ + +AAGE++ERP+  +KEL+ENS+DA ++ ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLPEQLTHILAAGEVVERPASCLKELLENSIDAGANLIDVKIEKGGMKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            +++    +RH TSKI   +D  +I T GFRGEAL +I +VS +TL+S+  +   G  + 
Sbjct: 66  PDDMEYVFERHTTSKIKSFEDIFSIKTMGFRGEALCAISSVSKVTLVSKHLEEERGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +V+ ++AIA+P++
Sbjct: 126 VEGGKVLSKSFCPFKEGTRIVVEDIFYNTPARLKFLKSPTTEQKYCLEVVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESAIGSIFGIEIVKNLVEFSLEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K + S I  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLLSSCIDEAFKNSVITGRFPIVFLFIQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  I+FR+   + N I ++I  ++  + +   + LSK  +   +   A +      + +L
Sbjct: 303 KLEIKFRDERFVYNTIYKAITDSLKSEKMIPKADLSKTNVG--NDAVAERKQAGVLSDNL 360

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLGIACAQIHQNYII 419
            N    +  ++               +S   + V E    E                YII
Sbjct: 361 KNNISLVISEQPNF---------FRIFSRREEIVIEQQGFENFDAGNYKIVGYAFDTYII 411

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            Q  D L ++DQHA HER +FE  +    S+ + SQ L +P I+ +       ++ +   
Sbjct: 412 VQGDDSLYLIDQHAVHERRLFEDFKSQIYSSNVQSQVLASPVIVQIPSSRKEFVISNQAI 471

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILA 538
             ++G + E FG N I +R  PAIL++      L DII+ I +      +L    E++L 
Sbjct: 472 FQKMGFEIEDFGKNEILVRTWPAILTENIEKMFLIDIIEMIYEQMVEDKSLVGISEDLLK 531

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC  +++   K+  +E   ++  +        C HGRP  +++   +IEK+F R
Sbjct: 532 RIACRAAVKGNSKISDLEKKEIVELVLIKKEIFHCPHGRPVVVEISKREIEKMFKR 587


>gi|120435154|ref|YP_860840.1| DNA mismatch repair protein MutL [Gramella forsetii KT0803]
 gi|167017342|sp|A0LZH8|MUTL_GRAFK RecName: Full=DNA mismatch repair protein mutL
 gi|117577304|emb|CAL65773.1| DNA mismatch repair protein MutL [Gramella forsetii KT0803]
          Length = 617

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 158/617 (25%), Positives = 303/617 (49%), Gaps = 32/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  IKEL+ENS+DA++SR++ VI   GK+  QI D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVIKELLENSIDAKASRIQVVIKDAGKTLIQIVDDGIG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI  +DD  ++ T GFRGEAL SI A++H+ L ++   +  G  
Sbjct: 65  MSLTDARMSFERHATSKIKLADDLFSLKTKGFRGEALASIAAIAHVELRTKTENDEVGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G ++ S        GT + V++LF+ IPAR NFLKS+ VET  I D  +R+A+A+P
Sbjct: 125 LKVEGSEVVSQDAFVTPKGTSISVKNLFYNIPARRNFLKSDNVETRHIIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF+     +  +++       NF +RI+ ++G       V + E +    + G+ G P
Sbjct: 185 NISFSLLHNGNELFQLPIT----NFRQRITNILGGKTNEKLVPVEEDTEIAKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + + F+N R ++  ++   +  ++   +    YP   L LE+DP+ +D+N+H
Sbjct: 241 EFAKKSRGEQFFFVNDRFIKSPYLNHAVTASFEGLLKDKSYPSYFLYLEVDPKSIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-------- 352
           P K+ I+F +   +   +  SI+ ++ +  ++      +        D   K        
Sbjct: 301 PTKTEIKFDDEHALYAILKSSIKHSLGQFNVAPILDFERDSELDTPYDYKNKEADAPQVE 360

Query: 353 -----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------- 400
                       +S T        ++++ +  + + S   + ++ +  +   E       
Sbjct: 361 VDRNFNPFQNEGSSKTQFSGGTNFRKDKPAEWESIYSGMQSETDTDIDIRHIEFESEEVT 420

Query: 401 -----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                A   Q   +  Q+ + YI+S    G++++DQH AH R+++E++ ++   +   SQ
Sbjct: 421 GNLFGAREEQTEKSTFQVQKKYIVSTLKSGILVIDQHRAHTRVLYEELLKNITVSSAVSQ 480

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P ++     E  ++ E  + L + G          + I  IP ++S+  +  LL  
Sbjct: 481 QLLFPLLLQFNSHEVEMLKEIKDSLEQTGFVFSSIKKEEVEISGIPTLISESEVEILLEQ 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           +I +  +         + + +  ++A   ++RSG  + S E   ++  +      +    
Sbjct: 541 LIADF-EKDVPDNGFSQTDLLAKSLANSMAVRSGTLLNSAEQQHIVNRLFACKEPALSPF 599

Query: 576 GRPTFIKLKLSDIEKLF 592
            +  F  L + +++K F
Sbjct: 600 NKTVFTTLSVDELDKKF 616


>gi|53715353|ref|YP_101345.1| DNA mismatch repair protein MutL [Bacteroides fragilis YCH46]
 gi|60683322|ref|YP_213466.1| putative DNA mismatch repair protein [Bacteroides fragilis NCTC
           9343]
 gi|81313626|sp|Q5L8M5|MUTL_BACFN RecName: Full=DNA mismatch repair protein mutL
 gi|81824910|sp|Q64NX1|MUTL_BACFR RecName: Full=DNA mismatch repair protein mutL
 gi|52218218|dbj|BAD50811.1| DNA mismatch repair protein MutL [Bacteroides fragilis YCH46]
 gi|60494756|emb|CAH09562.1| putative DNA mismatch repair protein [Bacteroides fragilis NCTC
           9343]
          Length = 625

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/626 (27%), Positives = 292/626 (46%), Gaps = 40/626 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQNIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G K+ S   V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 IIIAGSKVESQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  V G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPACH----LRQRILSVFGKKLNQQLLSVEVNTTMVKVSGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  SI++++ K     S          I +F Q+  P      
Sbjct: 301 PTKTEIKFENEQAIWQILSASIKESLGKFNAVPSIDFDTEDMPDIPAFEQNLPPAPPKVH 360

Query: 358 YATSLTN-----------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES- 399
           + +                       E L+    + S  +   SD    SE+   +EE  
Sbjct: 361 FNSDFNPFKPSSSSGGGNYSRPKVDWEDLYGGLEKASKMNQPFSDSDPESEEFAVIEEES 420

Query: 400 ------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                       E    + G    Q    +I++    GL+++DQH AH R++F++ R   
Sbjct: 421 IATAAPETLYAGELAVIEKGTQHLQFKGRFILTSVKSGLMLIDQHRAHIRVLFDRYRAQI 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
              +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  +P+ +   
Sbjct: 481 QQKQGFSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSDLGGGSYAINGVPSGIDGL 540

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           N   L+R ++   ++       ++  + +  T+A   +I  G+ + + EM  L+  +   
Sbjct: 541 NPVDLVRSMLHTAMEKGN-DVKEEIQDILALTLARAAAIVYGQVLSNEEMVSLVDNLFAC 599

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFG 593
           P+ +    GR     +K  +I+KLF 
Sbjct: 600 PSPNYTPDGRVVLTTIKEEEIDKLFR 625


>gi|206602340|gb|EDZ38821.1| DNA mismatch repair protein MutL [Leptospirillum sp. Group II
           '5-way CG']
          Length = 634

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/634 (27%), Positives = 295/634 (46%), Gaps = 44/634 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + +++QIAAGE+IERP+  +KEL+ENSLDA S ++   I  GG+    ++DNG 
Sbjct: 3   RIHELPKIVVDQIAAGEVIERPASVVKELVENSLDAGSGKISVYIEEGGRKSIIVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A +RH TSKI   DD     T GFRGEAL SI +VSH+ L SR     TG 
Sbjct: 63  GIYPDDVDLAFRRHATSKIQSVDDLLRARTLGFRGEALSSISSVSHVRLRSRTRDLETGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + ++S  +   +     +PGT +EVRDLF  +P RL FLKS   E + I + I  +A+ +
Sbjct: 123 EYSVSPGQEGILADWTGSPGTTIEVRDLFHNLPVRLKFLKSASTEQSQIQETITLLALGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F  S        ++ +         +  V+ E  ++ +V    +   I ++     
Sbjct: 183 PEVQFHLSVNGRTTLALSSREDRLLRLLDLYPVLEEKDLSRSV---LEGEGIRVEALVLT 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NR +     VF+N R ++   +L  I    A  I    +P   + +E+ P +VDVNV
Sbjct: 240 PDKNRKDRKYQNVFLNRRWIRHPGLLQAISQGAAGRIHKDVHPGAWVWIEMIPDKVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKK---------------------------GIS 332
           HP K  +RF     + + + + + + ++                             GI+
Sbjct: 300 HPTKKEVRFLETDRLFSLVRRVVSEGLDSFLNGSRTDPKKTFGEAPPDMRVSSGIFPGIA 359

Query: 333 TSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           + S L +           +   +   P          E+ +L+ +  S  +      P +
Sbjct: 360 SDSPLDRSSFRPEPPSGGERGQRRESPPGKVDRAPDPERPYLRTSAPSAREKRVVHHPEF 419

Query: 390 SEDNDPVEE---------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
               + ++           E           Q +  +I++     LVI+DQH AHER+ +
Sbjct: 420 QNLPELLKSLPPPPFSFRQENLEDLEIRILTQTYGTFILAFLGQELVIIDQHTAHERIRY 479

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +  R+     K++    L P+ + L   E   + E  ++L  LG   +  GP ++ +  I
Sbjct: 480 DSFRKGLEQGKMSMLPYLFPQTVRLTAREVENLEERVDELAHLGFDVDVQGPESVRVSGI 539

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PA+L  ++   LL+++ +     +      DRI+  L T++C+ SIR+   +   ++ RL
Sbjct: 540 PALLEGEDPASLLQELSESSQGFAFPLVRSDRIDETLMTLSCHTSIRANHSLGKEDLGRL 599

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +R + +      C HGRPT + L  + +EK F R
Sbjct: 600 VRMLLRTEYPFSCPHGRPTVLSLSPNVLEKWFHR 633


>gi|187932933|ref|YP_001886011.1| DNA mismatch repair protein [Clostridium botulinum B str. Eklund
           17B]
 gi|238691603|sp|B2TIB8|MUTL_CLOBB RecName: Full=DNA mismatch repair protein mutL
 gi|187721086|gb|ACD22307.1| DNA mismatch repair protein MutL [Clostridium botulinum B str.
           Eklund 17B]
          Length = 672

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 182/672 (27%), Positives = 307/672 (45%), Gaps = 83/672 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+E   N+IAAGE++ERP+  +KEL+EN++DA S  +   I  GG S  +I D+G 
Sbjct: 3   RINILNEDTANKIAAGEVVERPASVVKELVENAIDANSKNILIEIEEGGSSLIRIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+I  A   H TSKI  S+D  +I+T GFRGEALPSI +V+ + L ++      G 
Sbjct: 63  GIYKEDIEKAFLPHATSKIKESEDIYSINTLGFRGEALPSIASVARVNLKTKQETEECGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K S V    +N GTI+EVRDLFF +PAR  FLK+   E++LI D+I R+A++ 
Sbjct: 123 EITIEGGKFSEVTECGVNKGTIMEVRDLFFNVPARKKFLKTTSKESSLINDIITRIALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K+     NGN  + I  + G+  + N +   + S+  T+ GY G 
Sbjct: 183 PNISFKLFNNGK---KIIHTYGNGNMKDVIRTIYGKSIVENVLYFEDTSDIATIYGYVGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV---------VLLLEI 290
               RG+ N   +F+N R ++++ +   +  A+     + ++P            + + I
Sbjct: 240 EAIARGSRNNQSIFVNSRYIKNRSLGIAVEQAFKSFSTVSKFPFFILFIEIYPEYIDVNI 299

Query: 291 DP--RQVDVN------------VHPAKSYIRFRN---PTIIRNFI--------------- 318
            P   +V  N            VH +     F     P  +   I               
Sbjct: 300 HPTKSEVKFNDERFIFKKIFGAVHTSLKEEVFSTFSIPEEVNEAISKNTNLNIEEITFKI 359

Query: 319 ------IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---KYATSLTNTQEKL 369
                 ++     +++K I ++   +      + + +   T++P        L +   KL
Sbjct: 360 EEEQEKVKFNTNHLSQKNICSTQGNNSINKHIYDEKHKTDTNIPLNVNIPVDLKSDHIKL 419

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG---------------------- 407
               N +   +++  ++    E +   + ++  +                          
Sbjct: 420 EDDNNSIPNKEVICDNNEVKYESSYTSDSNQYENSCKSDVDKESKSKTTGTSELVKEKIP 479

Query: 408 -----IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
                    Q ++ YI+ +    L ++DQHAAHE+++FEK   D     I  Q L+ P +
Sbjct: 480 KFPAIKIIGQYNKTYILGEYAGTLYMIDQHAAHEKIMFEKYLNDIICGDIIIQPLMIPTV 539

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           IDL   + +   E+ +     G   E FG  +IA++E+P  L K     L  +I+D + +
Sbjct: 540 IDLSMDDYSYFEENKDVFKEAGFTIEDFGGTSIALKEVPYFLGKLKPKNLFLEILDNLKN 599

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
             +  T + +   I AT AC  +++    +  +EM +L+ E+    +   C HGRPT I+
Sbjct: 600 LGSGKTTEVKYNAI-ATKACKSAVKGNDSLDELEMVKLIEELRYIDDPFHCPHGRPTIIQ 658

Query: 583 LKLSDIEKLFGR 594
              +DI+K F R
Sbjct: 659 FTSTDIDKKFRR 670


>gi|319954280|ref|YP_004165547.1| DNA mismatch repair protein mutl [Cellulophaga algicola DSM 14237]
 gi|319422940|gb|ADV50049.1| DNA mismatch repair protein MutL [Cellulophaga algicola DSM 14237]
          Length = 617

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 161/617 (26%), Positives = 295/617 (47%), Gaps = 32/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +  ++ +I  GGK+  Q+ DNG G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGADAIKLIIKDGGKALIQVVDNGVG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  ++ +RH TSKI  +DD   +HT GFRGEAL SI A++H+ L++R   +  G Q
Sbjct: 65  MSATDARLSFERHATSKIKSADDLFCLHTKGFRGEALASIAAIAHVELLTRTATDEIGVQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G KISS  P     GT   V++LFF IPAR NFLKS QVE   ITD   R+A+A+P
Sbjct: 125 LKVEGSKISSQEPTVTPKGTSFCVKNLFFNIPARRNFLKSNQVEFRHITDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F F    S  + +       N+ +RI  V G       V + E++  + + G+   P
Sbjct: 185 DIQFHFYNNGSEIFHLP----KSNYRQRIVNVFGAKTNEKLVPVEEETQVVKISGFISKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F++ +  + + F+N R ++  ++   + +A+   I    +P   L L++DP  +D+N+H
Sbjct: 241 EFSKKSRGEQFFFVNNRFIKSPYLHHAVVSAFEGLIKSENHPGYFLYLDVDPASIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------- 341
           P K+ I+F +   +   +  +I+ A+ +  +  +                          
Sbjct: 301 PTKTEIKFDDEHTVYALLRSAIKHALGQFNVVPALDFEADQNLETPYNYKAKLAEVPRVS 360

Query: 342 ----ISSFHQDNAPKTH-LPKYATSLTNTQEKLFLQ-ENRLSTNDLLPSDDPTYSEDNDP 395
                + F  D    +H    Y        E +++  E+++       S           
Sbjct: 361 VDASFNPFADDTPKASHRASNYEKPSAKGWENMYVGLESKVGKEADFSSVSFESETITGS 420

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
           + ++            Q+ + YI++    G++I+DQ  AH+R+++E   ++    +  SQ
Sbjct: 421 IFDTGTETIDSVSTTFQLKRKYIVTTIKSGMIIIDQSRAHQRVLYENFLKNITIKEGVSQ 480

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  ++    E  +I E  + L  LG   +      + I  +P ++ +  +  +L  
Sbjct: 481 QLLFPLQLNFSITEVNIIKEIIDSLINLGFAFDAIDEENVLISGVPLLVPESEVGMVLDQ 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           +I +     T      + + +  T++   ++++G ++ S     L+  +           
Sbjct: 541 LISDY-QMDTPEDSFSQSDIVAKTLSKTLAVKTGEQLDSESQLALVNNLFACKEFKISPF 599

Query: 576 GRPTFIKLKLSDIEKLF 592
            +P +I L   DI+K F
Sbjct: 600 NKPIYITLTGEDIDKKF 616


>gi|312793676|ref|YP_004026599.1| DNA mismatch repair protein mutl [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180816|gb|ADQ40986.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 588

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/593 (28%), Positives = 296/593 (49%), Gaps = 15/593 (2%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL E I + +AAGE++ERP+  +KEL+ENS+DA +S ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLPESITHILAAGEVVERPASCLKELLENSIDAGASLIDVKIEKGGMKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++I    +RH TSKI   +D  +I T GFRGEAL +I +V+ +TL+S+  +   G  + 
Sbjct: 66  PDDIEYVFERHTTSKIKSFEDIFSIKTMGFRGEALCAISSVAKVTLVSKHLEEEQGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +V+ ++AIA+P++
Sbjct: 126 VEGGKVLSKSFCPFKEGTRIIVEDIFYNTPARLKFLKSPSTEQKYCLEVVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESVIGSIFGIEIVKNLVEFSLEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K + S I  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLLSSCIDEAFKNSVITGRFPIVFLFVQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  ++FR+   + N I ++I  ++  + +   + L K    +  +     T +    ++ 
Sbjct: 303 KLEVKFRDERFVYNTIYKAIADSLKSEKMIPKADLGKANDGNDAERERKYTEILSANSND 362

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            +           +S            +E     +  E                YII Q+
Sbjct: 363 ISL---------VISEQPNFFEMFSKGAEVVIEQQSFENFDAGNYKIVGYAFDTYIIVQS 413

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L ++DQHA HER +FE  +    S+ + SQ L +P ++ L   +   ++ +     +
Sbjct: 414 NDSLYLIDQHAVHERRLFEDFKSQVYSSNVQSQVLASPVVVRLPSSQKEFVISNASVFQK 473

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILATMA 541
           +G + E FG N I +R  PA+LS       L D+I+ I +      +L +  E++L  +A
Sbjct: 474 IGFEIEDFGKNEIVVRTWPALLSSNIDTIFLLDVIEMIYEQMVENKSLVEISEDLLKRIA 533

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +++   K+  +E   ++  +        C HGRP  +++   +IEK+F R
Sbjct: 534 CRAAVKGNSKISDLEKKEIVELVLIKKEIFHCPHGRPVVVEISKREIEKMFKR 586


>gi|189461631|ref|ZP_03010416.1| hypothetical protein BACCOP_02290 [Bacteroides coprocola DSM 17136]
 gi|189431661|gb|EDV00646.1| hypothetical protein BACCOP_02290 [Bacteroides coprocola DSM 17136]
          Length = 628

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/634 (26%), Positives = 284/634 (44%), Gaps = 53/634 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  +KEL+EN++DA +  ++ +I   GK+  Q+ D+G G
Sbjct: 5   IRLLPDSVANQIAAGEVIQRPASVVKELVENAIDAGAHHIDVLITDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI    D   +HT GFRGEAL SI AV+ + L +       G +
Sbjct: 65  MSETDARLAFERHATSKIRQAADLFALHTMGFRGEALASIAAVAQVELRTCQEGEQLGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ISG K+ S   VA   G+   V++LFF IPAR  FLKS Q E + I     R+A+  P
Sbjct: 125 ICISGSKVESQEAVACPHGSNFSVKNLFFNIPARRKFLKSNQTELSNILTEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSFT     +    +          +RI  V G+    + + L+ +++ + + G+ G P
Sbjct: 185 EVSFTLHHNDTEMLNLPAI----QLRQRIMGVFGKKLNQDLLSLDIETSMVKIHGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + + F+NGR ++  +    +  AY   IP+G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGARQFFFVNGRYMRHPYFHKAVVDAYENLIPVGEQVSYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLPKYA 359
           P K+ I+F N   I   +  ++++ + +     S     + +      D AP + +   +
Sbjct: 301 PTKTEIKFENEQPIWQILSAAVKETLGRFNAVPSIDFDTEGMPDIPAFDAAPVSGVRPPS 360

Query: 360 TSLTNTQEKLFLQE-----------------------------------NRLSTNDLLPS 384
           TS   +     +                                           D   S
Sbjct: 361 TSYDPSYNPFNVSSVPPSQYSPSSYQKQHVEWEPLFQGLEKKGSSSWDMPASPIPDETWS 420

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
           +     E     E +E    +      Q   +YI++    GL+I+DQ  AH R+++++  
Sbjct: 421 EPEQQPEPMLYDEHAEGAIAEKSAQHYQYKGSYILTSVKSGLMIIDQQRAHIRILYDQYM 480

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
               + +  SQ +L P+++     E  ++ E  +DL  LG +    G  + AI  IPA +
Sbjct: 481 NQIANRRNVSQRMLFPDMVHFSPAEIPVLEEIMDDLTALGFELSNLGGGSYAINGIPAGI 540

Query: 505 SKKNIPQLLRDIIDEIIDSS-----TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
              N   L+ +++   I+          ++        A       I  G+ + + EMN 
Sbjct: 541 EGLNPETLVTNMVQTAIEKGCKVKEEVQSMLALSLAKAAA------IVPGQVLTNEEMNN 594

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+ E+      +    G+     LK  D+EKLF 
Sbjct: 595 LVDELFAVSTPNYTPDGKVVLSVLKEDDLEKLFK 628


>gi|312875822|ref|ZP_07735812.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797303|gb|EFR13642.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 588

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/593 (28%), Positives = 296/593 (49%), Gaps = 15/593 (2%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL E I + +AAGE++ERP+  +KEL+ENS+DA +S ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLPESITHILAAGEVVERPASCLKELLENSIDAGASLIDVKIEKGGMKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++I    +RH TSKI   +D  +I T GFRGEAL +I +V+ +TL+S+  +   G  + 
Sbjct: 66  PDDIEYVFERHTTSKIKSFEDIFSIKTMGFRGEALCAISSVAKVTLVSKHLEEEQGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +V+ ++AIA+P++
Sbjct: 126 VEGGKVLSKSFCPFKEGTRIIVEDIFYNTPARLKFLKSPSTEQKYCLEVVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESVIGSIFGIEIVKNLVEFSLEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K + S I  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLLSSCIDEAFKNSVITGRFPIVFLFVQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  ++FR+   + N I ++I  ++  + +   + L K    +  +     T +    ++ 
Sbjct: 303 KLEVKFRDERFVYNTIYKAIADSLKSEKMIPKADLGKANDGNDAERERKYTEILSANSND 362

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            +           +S            +E     +  E                YII Q+
Sbjct: 363 ISL---------VISEQPNFFEIFSKGAEVVIEQQSFENFDAGNYKIVGYAFDTYIIVQS 413

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L ++DQHA HER +FE  +    S+ + SQ L +P ++ L   +   ++ +     +
Sbjct: 414 DDSLYLIDQHAVHERRLFEDFKSQVYSSNVQSQVLASPVVVRLPSSQKEFVISNASVFQK 473

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILATMA 541
           +G + E FG N I +R  PA+LS       L D+I+ I +      +L +  E++L  +A
Sbjct: 474 IGFEIEDFGKNEIVVRTWPALLSSNIDTIFLLDVIEMIYEQMVENKSLVEISEDLLKRIA 533

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +++   K+  +E   ++  +        C HGRP  +++   +IEK+F R
Sbjct: 534 CRAAVKGNSKISDLEKKEIVELVLIKKEIFHCPHGRPVVVEISKREIEKMFKR 586


>gi|150025219|ref|YP_001296045.1| DNA mismatch repair protein MutL [Flavobacterium psychrophilum
           JIP02/86]
 gi|167017341|sp|A6GYR1|MUTL_FLAPJ RecName: Full=DNA mismatch repair protein mutL
 gi|149771760|emb|CAL43234.1| DNA mismatch repair protein MutL [Flavobacterium psychrophilum
           JIP02/86]
          Length = 613

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 166/619 (26%), Positives = 295/619 (47%), Gaps = 41/619 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +S ++ +    GK   Q+ DNG G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGASDIKLICKEAGKVLIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +  +RH TSKI   +D  ++HT GFRGEAL SI A++H+ + ++  Q   G  
Sbjct: 65  MSVTDARLCFERHATSKIRQAEDLFDLHTKGFRGEALASIAAIAHVEMKTKQDQEELGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G K  S     +  GT   V++LFF IPAR NFLKS+ VE   I D  +R+A+A+ 
Sbjct: 125 IIIEGSKFVSQDVAVLPKGTSFLVKNLFFNIPARRNFLKSDIVELRHIIDEFQRVALAHH 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FTF    S  + +       N  +RI  +         V + E ++ +++QG+ G P
Sbjct: 185 NIHFTFYHNGSELFNLP----QSNVRQRIVNIFSGKTNEKLVPIQENTDILSIQGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + + F+N R ++  ++   I  AY   +  G  P   L L++ P  +D+N+H
Sbjct: 241 EFAKKSKGEQFFFVNDRFIKSGYLHHAIMNAYEGLLRDGAQPSYFLYLDVPPHTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-------------------- 340
           P K+ I+F +   +   +  + + ++ +  ++      +                     
Sbjct: 301 PTKTEIKFDDEQALYAILRSATKHSLGQFNVAPVLDFERDFNLDTPYSYQNKEAETPTIQ 360

Query: 341 ---MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
                + F ++        K  T      E L++  +  S  DL      + +  +    
Sbjct: 361 VDSNFNPFQEEKKQSNFSYKPKTEKQPHWESLYVGLDTKSI-DLDEMSFESETVTSSLFS 419

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           +SE           QIH+ YI++    G++I+DQ  AH+R+++E+   +    +  SQ L
Sbjct: 420 DSEVEKAPTTTY--QIHKKYIVNPIKSGMLIIDQQRAHQRILYEQFLTNITIHQANSQQL 477

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI----PQLL 513
           L P  +     E ALI E  + L   G   E    ++I I  +P  +S+        QL+
Sbjct: 478 LFPVTLYFSGNEMALIQEIKQSLESTGFVFEALNKDSIVISGLPVTVSESEASIVLEQLV 537

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            D+  E+ DSS +      ++++  +MA   ++++G  +       L+  +     ++  
Sbjct: 538 SDLQQEVPDSSFSQ-----MDSMAKSMAKSLAVKTGTYLTEEAQVNLVNNLFACKEATVS 592

Query: 574 NHGRPTFIKLKLSDIEKLF 592
              + TFI L + D++K F
Sbjct: 593 PFNKTTFITLSVEDLDKKF 611


>gi|258405211|ref|YP_003197953.1| DNA mismatch repair protein MutL [Desulfohalobium retbaense DSM
           5692]
 gi|257797438|gb|ACV68375.1| DNA mismatch repair protein MutL [Desulfohalobium retbaense DSM
           5692]
          Length = 582

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 191/595 (32%), Positives = 306/595 (51%), Gaps = 20/595 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L   + NQIAAGE++ERP+   KELIENSLDA ++R+E  +  GG+   Q+ DNG 
Sbjct: 4   PIRVLPPVLQNQIAAGEVVERPANVAKELIENSLDAGATRIEINLENGGQGLIQVQDNGH 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+IP+A+ RH TSKI   +D   I + GFRGEALPSI +VS L+  S P     G 
Sbjct: 64  GLAAEDIPLALTRHATSKIQGIEDLVRIASLGFRGEALPSIASVSRLSFASAPAGVEAGH 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++  +++S  PVA+  GT ++VRDLF   PARL FLK++  ET    + + ++A+A+
Sbjct: 124 EVEVAFGEMASEGPVALQTGTRIQVRDLFSNTPARLKFLKTQATETRRCQETVFKIALAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
               FT S    N+  +     +   P+R++ V  +  I+  + L  + + + ++G  G 
Sbjct: 184 LDKEFTLSIQGRNQLHLV---KHQALPQRLAAVWPQQVIDGLLPLQGERHGLQVEGVIGS 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +G A + + FINGR VQDK +L  +R  Y   +    YP  VL L +   +VD+NV
Sbjct: 241 PRTAQGRAQRIHFFINGRPVQDKILLKALREGYKGALLSKEYPQAVLFLTLPLEEVDINV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +RFR+   +   +  +++ A+ K   S + +       S  Q  AP+   PK+ 
Sbjct: 301 HPAKSEVRFRDERSVAGLVCTTVRNALEKCDPSQAVLGEAPATQSSVQ--APQAAAPKFG 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           T      E       +        S +   +E    + ES     +      Q+   Y++
Sbjct: 359 T-FHEYLESADAPSPQTRARYTSSSPNTPQTETAPQIRESGPASREPAY-LGQVASTYLL 416

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                GL++VDQHAAHER++F  +RQ  +   +  Q L  P  + L  GE     +    
Sbjct: 417 VDDGQGLLLVDQHAAHERILFNALRQQHD--GVEQQLLALPLELALQPGERERFQDVALQ 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L ++G        + ++++ IPA L+      LLRDI+            +  ++++   
Sbjct: 475 LRQMGFSCSLVESSLLSVQAIPASLATDQARALLRDIL---------GGKERSVDDMRVV 525

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  +I++G  +   E   LL+  E++     C HGRP  ++    D+E+LF R
Sbjct: 526 LACRIAIKAGDPLSRDEALHLLQAWEQSQERFYCPHGRPVAVRFGPGDLERLFKR 580


>gi|281423981|ref|ZP_06254894.1| DNA mismatch repair protein MutL [Prevotella oris F0302]
 gi|281401906|gb|EFB32737.1| DNA mismatch repair protein MutL [Prevotella oris F0302]
          Length = 611

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 165/610 (27%), Positives = 285/610 (46%), Gaps = 26/610 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  +KEL+EN++DA +  ++  +   GK+  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVVKELVENAVDAGAKNIQVQVIDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   +HT GFRGEAL SI AV+ + L +R  ++  G  
Sbjct: 65  MSETDARLSFERHATSKIRKADDLFALHTMGFRGEALASIAAVAQVELKTRQEKDEIGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G +     P + + G    +  LF+ +PAR  FLKS   E N I     R+A+ YP
Sbjct: 125 LSIAGSRFVGQEPCSCSVGCSFSINSLFYNVPARRKFLKSNSTELNNIITAFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF+  +  +  + +      G   +RI  + G+      + +N  +    + G+ G P
Sbjct: 185 DISFSLHSNGTELFNLKA----GVLRQRIIDIFGKRLNQELLSVNVDTTMCRINGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y+F+NGR ++  +    +  A+   +P G      L  E+ P  +DVN+H
Sbjct: 241 QSARKKGAHQYLFVNGRYMKHPYFNKAVTAAFERLVPAGEQVPYFLYFEVAPEDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++A+       S       +  I  ++   +      K
Sbjct: 301 PTKTEIKFENEVPIWQILSAAVKEAVGMFNDIPSIDFDTEGRPDIPVYNPGESVTAPTLK 360

Query: 358 YATSLT---------------NTQEKLF-LQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
           Y                    N  ++L+   +++ S    L S   T  E  D  + +E 
Sbjct: 361 YNPDYNPFRSSAGSSRSSSASNRWDELYQAAQHQPSQETELFSSKMTSPETTDEPQSAEN 420

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
              +   A  Q    YI++    GL+I+DQH AH R++F++ ++     +  SQ +L PE
Sbjct: 421 VIAEKSPAHYQYKGRYIMTAVKSGLMIIDQHRAHVRILFDRYQEQLKCREAASQKVLFPE 480

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
            +     E   + +   +L  LG      G ++ A++ IPA L   +   LL D+I    
Sbjct: 481 NVHFSASEEVTLTKIMPELQGLGFDFNAMGGSSYAVQAIPAGLEGLDFSSLLHDMIASAQ 540

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           +  T   L +    +  TMA   +I  G+ + + EM  +   +  + N +    G+    
Sbjct: 541 EKPTA-ILDEISSALALTMARKAAIPQGQVLNNDEMENIFNMLFASSNPNYTPDGKNILC 599

Query: 582 KLKLSDIEKL 591
            LK + IE L
Sbjct: 600 ILKQNKIEHL 609


>gi|260909464|ref|ZP_05916168.1| DNA mismatch repair protein MutL [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260636389|gb|EEX54375.1| DNA mismatch repair protein MutL [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 606

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/608 (27%), Positives = 286/608 (47%), Gaps = 23/608 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA ++R++  +   GK+  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASIIKELVENAVDAGATRIDVNVIDAGKTSVQVIDNGRG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI    D   + T GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLAFERHATSKIRQASDLFALSTMGFRGEALASIAAVAQVELKTRLASEEIGTS 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++I+G + +   P A   G+   + +LF+ IPAR  FLKS   E N I     R+A+ YP
Sbjct: 125 LSIAGSQFTGQEPCACPVGSNFVIENLFYNIPARRKFLKSNATELNNIITAFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  +  + +          +RI  V G+    + +  N +++   + G+ G P
Sbjct: 185 DIAFTLRSNGTEVFNLPSVV----LKQRIVDVFGKRISQDLLSFNVETSICKIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +   +   IP G      +  E++P  +DVN+H
Sbjct: 241 ESARKKGAHQYFFVNGRYMKHPYFSKAVMLPFERLIPQGEQVPYFIYFEVNPEDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------KMISSFHQDNAPKTH 354
           P K+ I+F N   +   +  S+++A+       +            + +      APK +
Sbjct: 301 PTKTEIKFENEQAVWQILSVSVREAVGLFNDVPTIDFDTEGRPDIPVYNPNENAPAPKVN 360

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLL------PSDDPTYSEDNDPVEESEATHYQLGI 408
              +     +T +     +N     DL          D     D D  EE   +      
Sbjct: 361 YNPHYNPFDDTPQSTLQSKNNSRWEDLYAGLQSSEEPDLGLFPDTDKDEEGTVSRMIEDK 420

Query: 409 ACAQIH--QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           + A       Y+++    GL+++DQH AH R++FE+  +       TSQ +L PE++   
Sbjct: 421 SPAHYQYKGRYVMTAVKSGLLVIDQHRAHVRILFEQYLRQVAQRSGTSQKVLFPEVVQFT 480

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             E  +  +   DL  LG +    G    A+  IPA L   N  +++RD++   ++    
Sbjct: 481 ASEDLVAQKIMLDLQGLGFELTDLGARNYAVNAIPAGLEGINPIEMIRDMVATAMEKGAG 540

Query: 527 YTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
             L D +   LA ++A   +I  G+ + + EM  L+  +    N +   +G+     +  
Sbjct: 541 --LHDDVNQALALSLARNAAIPYGQVLGNDEMESLVNALFACQNVNYTPNGQKILAIMAQ 598

Query: 586 SDIEKLFG 593
           +D+E+LFG
Sbjct: 599 TDLEQLFG 606


>gi|332885974|gb|EGK06218.1| DNA mismatch repair protein mutL [Dysgonomonas mossii DSM 22836]
          Length = 610

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 175/611 (28%), Positives = 297/611 (48%), Gaps = 25/611 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RPS  +KEL+EN++DA +  ++ +I   G++  Q+ DNG G
Sbjct: 5   IHLLPDSIANQIAAGEVIQRPSSVVKELVENAIDAGADSIQLIIKDAGRTLIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  MA +RH TSKI   DD  ++HT GFRGEALPSI A+SH+ + +R  ++  G  
Sbjct: 65  MSATDARMAFERHATSKIRKADDLFDLHTMGFRGEALPSIAAISHVEVKTRRAEDELGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ +  PVA   G+   V+++F+ +PAR  FLKS   E   I   + R+ +  P
Sbjct: 125 LQIAGSRVENQEPVACPVGSNFSVKNIFYNVPARRKFLKSNDTERRNILTELERIVLVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FTF        K       G   +RI  V+G++F    + ++  ++   + G+ G P
Sbjct: 185 SIEFTFIDNDVEVLKFPA----GGLRQRIVNVVGKNFNQQLISIDIDTSLAKITGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    Q + F+N R ++  +    +++A+   I  G YP   +  ++DP  +DVN+H
Sbjct: 241 ESARKARAQQFFFVNNRYMRHAYFNKAVQSAFEPLILNGEYPNYFIYFQVDPSTIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------------KMISSFHQD 348
           P K+ I+F N   I   +  +I++A+ K     +                 K IS    +
Sbjct: 301 PTKTEIKFENEQPIWQILTAAIKEALGKFNEVPTIDFDTEGAIDIPIHDPSKNISQPRVN 360

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
             P  +  K        + K  L       E+  +T D      P     +         
Sbjct: 361 IDPSYNPFKSPARTNYQRPKFDLDQLYKGFESDKNTADFSTEVAPDVDIFSQQQTGDSEK 420

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
                +   Q    YI++    GL+++DQH AH R++F++        +  SQ  L PEI
Sbjct: 421 IVPEMVVHYQYKNRYILTSVKSGLMLIDQHRAHIRILFDQFLSQIEHKRGISQRALFPEI 480

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           I+L   E A++    +DL  +G      G ++ AI   PA ++  +  QL+ +II++ I+
Sbjct: 481 IELSPSEAAMMPYLKDDLEAVGFDLSHLGNSSYAINGTPAEITNIDSVQLVHNIINKSIE 540

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
           S  +   ++  E +  +MA   SI  G  + + EMN+++ ++  +        G+     
Sbjct: 541 SG-SDVKEEIREALALSMAYAASIPYGHTLSTEEMNKIVDQLFASSAYKHTPDGKTIISM 599

Query: 583 LKLSDIEKLFG 593
           L+   IEK+F 
Sbjct: 600 LEDDAIEKMFK 610


>gi|154504381|ref|ZP_02041119.1| hypothetical protein RUMGNA_01885 [Ruminococcus gnavus ATCC 29149]
 gi|153795310|gb|EDN77730.1| hypothetical protein RUMGNA_01885 [Ruminococcus gnavus ATCC 29149]
          Length = 664

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 168/665 (25%), Positives = 295/665 (44%), Gaps = 74/665 (11%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+ENS+DA+++ V   I  GG S  ++TDN
Sbjct: 1   MPQIQVLDQITIDKIAAGEVIERPASIVKELVENSIDAKAASVTVEIQDGGISLIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  E+I  A  RH TSKI   +D ++I + GFRGEAL SI AV+   L+++  ++  
Sbjct: 61  GSGIEREDIRNAFLRHSTSKIRKVEDLAHIASLGFRGEALSSISAVTRTELITKTKEDTF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G    S+       GT   VR LF+ +PAR  FLK+   E   + D++ R+A+
Sbjct: 121 GTRYVIEGGVEQSLEDAGAPDGTTFLVRQLFYNVPARRKFLKTPMTEAGHVQDLLMRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+V+FTF      + +    S NG   + I  + G +   N +EL+   + + ++GY 
Sbjct: 181 SHPEVAFTFINNGQTKMR---TSGNGKLKDVIYSIYGREAAANLIELDYSMDGLVMKGYL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    F+NGR V++  +   I  AY + +   ++P VV+  ++D  ++DV
Sbjct: 238 GKPVITRGNRNFENYFVNGRYVKNAMLSKAIEDAYKDFLMQHKFPFVVIHFQVDGEKIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF+    + N + + + + + +  +          + S  +  +P    PK
Sbjct: 298 NVHPTKMEMRFQRQQDVYNIVYEGVHRTLLEPELIPQVEAPAPKVISQPKSESPFLLKPK 357

Query: 358 YATSLTNT------------------QEKLFLQENRLSTNDLLPSDDPTYSEDND----- 394
            A                        +E++     R S+ ++   +     +        
Sbjct: 358 TAPQPMEKKPEEKEEPHDEAYFMKKMKERVLSYHQRNSSAEVAKKEQIFRPQAQAERIKD 417

Query: 395 ------PVEESEATHYQLGIACAQIHQNYIIS----QTTDGLVIVDQHAAHE-------- 436
                  VE+      +      +    Y       +  + L + ++H            
Sbjct: 418 ALARAKEVEKQPQKQAEEQPELIRETPVYETKPVTEEKAEQLNLFEEHLLKREKKAEYKL 477

Query: 437 -RLIFEKMRQDFNSTKI-------------------TSQTLLTPEIIDLLEGECALIMEH 476
              +FE          +                     +               +L M+ 
Sbjct: 478 IGQVFETYWLVEFENSLYIIDQHAAHERVLYERTLKEMKNREFTAQYLSPPIILSLSMQE 537

Query: 477 DEDLHR-------LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
            + L+        +G + E FG    A+R IP  L      +LL +++D++ D  +T   
Sbjct: 538 AQVLNENMDRFTRIGFEIEPFGGEEYAVRAIPDNLFGIAKKELLLEMLDDLTDGISTSMT 597

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            + I+  +A+M+C  +++   ++ + E + L+ E+    N   C HGRPT I +   ++E
Sbjct: 598 PELIDEKVASMSCKAAVKGNNRLSAQEADALIGELLLLENPYHCPHGRPTIIAMTQRELE 657

Query: 590 KLFGR 594
           K F R
Sbjct: 658 KKFKR 662


>gi|312135298|ref|YP_004002636.1| DNA mismatch repair protein mutl [Caldicellulosiruptor owensensis
           OL]
 gi|311775349|gb|ADQ04836.1| DNA mismatch repair protein MutL [Caldicellulosiruptor owensensis
           OL]
          Length = 589

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 169/593 (28%), Positives = 294/593 (49%), Gaps = 14/593 (2%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KLSE++ + +AAGE++ERP+  +KEL+ENS+DA +S ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLSEQLTHILAAGEVVERPASCLKELLENSIDAGASLIDVKIEKGGMKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++I    +RH TSKI   +D  +I T GFRGEAL +I +V+ +TL+S+  +   G  + 
Sbjct: 66  PDDIEYVFERHTTSKIKSLEDIFSIKTMGFRGEALCAISSVAKVTLVSKHLEEEQGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +++ ++AIA+P++
Sbjct: 126 VEGGKVLSKSFCPFKKGTRIVVEDIFYNTPARLKFLKSPSTEQKYCLEMVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESVIGSIFGIEIVKNLVEFSIEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K   S +  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLFSSCVDEAFKNSVITGRFPIVFLFVQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  ++FR+   + N + ++I  ++  + +     LSK  +   +       H+   + + 
Sbjct: 303 KLEVKFRDEQFVYNTVYKAIADSLKSEKMIAKLDLSK--VDDANDAELEHKHIEVLSANS 360

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            +    +  Q N                E     +  E                YII Q 
Sbjct: 361 NDISLVISEQPN------FFEMFSNEPREVVIEQQGFENFDAGNYKIVGYAFDTYIIVQG 414

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L ++DQHA HER +FE  +    S+ + SQ L  P +  L   +   ++ +     +
Sbjct: 415 DDSLYLIDQHAVHERRLFEDFKGQIYSSNVQSQVLAVPVVAQLPSSQKEFVLSNRSIFQK 474

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILATMA 541
           +G + E FG N I +R  PAIL+K      L D+I+ + +      +L    E++L  +A
Sbjct: 475 MGFEIEDFGKNEIVVRTWPAILTKSIDKVFLLDVIEMVYEQMVGDKSLVGISEDLLKRIA 534

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +++   K+  +E   ++  +        C HGRP  +++   DIEK+F R
Sbjct: 535 CRAAVKGNSKISDLEKKEIVELVLVKKEIFHCPHGRPVVVEITKKDIEKMFKR 587


>gi|295133314|ref|YP_003583990.1| DNA mismatch repair protein MutL [Zunongwangia profunda SM-A87]
 gi|294981329|gb|ADF51794.1| DNA mismatch repair protein MutL [Zunongwangia profunda SM-A87]
          Length = 619

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 154/619 (24%), Positives = 300/619 (48%), Gaps = 34/619 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  IKEL+EN++DA +  ++ V+   GK+  QI D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVIKELLENAIDAYAHNIQVVVKDAGKTLIQIVDDGAG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M  +RH TSKI  ++D  +++T GFRGEAL SI A++H+ L ++P     G  
Sbjct: 65  MSLTDARMCFERHATSKIKSAEDLFSLNTKGFRGEALASIAAIAHVELKTKPQNEEVGTC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G K++S  P     GT + V++LF+ IPAR NFLKS+ VE   I D  +R+A+A+P
Sbjct: 125 IKIEGSKVTSQEPCVTPKGTSLCVKNLFYNIPARRNFLKSDAVELRHIIDEFQRVAMAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+        +++       N  +RI+ + G       V +NE +  + + G+ G P
Sbjct: 185 SIAFSLFHNGGELFQLPST----NHRQRITNIFGAKTNEKLVPVNEDTEIVKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + + F+N R ++  ++   +  A+   +    YP   L L+++P+ +D+N+H
Sbjct: 241 EFAKRSRGEQFFFVNNRFIKSPYLNHAVSAAFDGLLKEKTYPSYFLYLDVNPKSIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT-HLPKYA 359
           P K+ I+F +   +   +  +I+ ++ +  ++      +        +   +   +PK  
Sbjct: 301 PTKTEIKFDDEHALYAMLRSAIKHSLGQFSVAPVLDFDRDANLDTPYEYKNRQAQVPKIE 360

Query: 360 --------------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
                         +S+ + +   F +EN  S   L      T   +    ++ E    +
Sbjct: 361 VDRSFNPFENELNTSSIRSGKSHNFRKENTQSWESLYAGLKTTPETNQHQFKQVEFESEE 420

Query: 406 LGIAC------------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
           +                 Q+ + YI+S    G++++DQ+ AH R+++E++ ++       
Sbjct: 421 VTGKLFDDNHSGSEAGTFQLQKKYIVSTLKSGILVIDQNRAHTRILYEELLKNITIAAAV 480

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LL P  +     E  ++ E  E L + G          + I  IP ++S+  +  LL
Sbjct: 481 SQQLLFPLQLQFNTHEIEMLKEIKESLEQTGFIFSNIEDETVEITGIPTLISESEVGILL 540

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
             ++ +  ++        + + +  ++A   +++SG  + S E   ++  +         
Sbjct: 541 EQLLSDF-ENEVPDNGFSQTDLLAKSLAKGMAVKSGTLLNSTEQQHIVNRLFACKEPDVS 599

Query: 574 NHGRPTFIKLKLSDIEKLF 592
              +  F+ L + +++K F
Sbjct: 600 PFNKSVFVTLTVDELDKKF 618


>gi|206900128|ref|YP_002250800.1| DNA mismatch repair protein MutL [Dictyoglomus thermophilum H-6-12]
 gi|238058931|sp|B5YE42|MUTL_DICT6 RecName: Full=DNA mismatch repair protein mutL
 gi|206739231|gb|ACI18289.1| DNA mismatch repair protein MutL [Dictyoglomus thermophilum H-6-12]
          Length = 575

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 187/598 (31%), Positives = 306/598 (51%), Gaps = 31/598 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+  L E++ N+IAAGE++ERP   +KEL+ENS+DA ++R+    A GG++   + D+G 
Sbjct: 3   KVVLLPEELRNKIAAGEVVERPVSVVKELVENSIDAGATRIIVEFANGGETLISVIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ R  TSKI   +D  NI T GFRGEAL SI +VS + L S+    + G 
Sbjct: 63  GMTREDAILALNRFATSKIKTEEDLYNIKTLGFRGEALASIASVSKMELRSKTELED-GV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G  I  V     + GT+++V DLF+ +PAR  FLKS+  ETNLI D ++R+AIAY
Sbjct: 122 FIKVEGGVIKEVNLWQGSKGTVIKVSDLFYNVPARKKFLKSKATETNLIIDFVKRIAIAY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF       +++       +G+    IS +       + +   ++  +  ++G+   
Sbjct: 182 PQISFQLIQDGKSKF---ITPGDGDLENLISLLFDIRVQESLISFQKREGDYCIEGFVSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P       +Q Y ++N R V++  IL  IR  Y   I  G +P  ++ L +   +VDVNV
Sbjct: 239 PGKLIALKSQDYFYVNRRWVRNNTILQAIREGYKGRILDGYFPFSIIFLTVPYSEVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  ++F+    +  F+ +SI++A+++           +    F    AP+T   +Y 
Sbjct: 299 HPTKREVKFQKEKEVYEFVFRSIREALDE-----------EEKKFFINMKAPETESKEYK 347

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           +    T ++  L          L        +                    QI  NYII
Sbjct: 348 SDSQITLDREILSLP-------LEFKPYKSEKKLSEAVSEYIPLRSGFRIVGQIFDNYII 400

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +T D + I+DQHAAHER+ +E+++++ N   I +  +L P +I++ E E  L+ ++ + 
Sbjct: 401 LETKDKVYIIDQHAAHERIKYEELKEELNLGYIQNVEILFPVVIEVSEEEKILLDKYKDL 460

Query: 480 LHRLGIKAERFGPNAIAIREIP---AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
           L R     E FGP  I I ++P        K+I  L R+II +I +      L    + I
Sbjct: 461 LERFAFSWEDFGPYHIRIVKVPYEFLNFDSKSIENLFREIISDISEKD----LSKLEDKI 516

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +MAC+ ++RSG  +   EM  L++ + +      C HGRP   ++   D+E+ F R
Sbjct: 517 IKSMACHSAVRSGNILIREEMEMLIKLIFEKNIPLTCPHGRPYIWEISREDLERYFHR 574


>gi|302871704|ref|YP_003840340.1| DNA mismatch repair protein MutL [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574563|gb|ADL42354.1| DNA mismatch repair protein MutL [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 589

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/593 (28%), Positives = 296/593 (49%), Gaps = 14/593 (2%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL E++ + +AAGE++ERP+  +KEL+ENS+DA +S ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLPEQLTHILAAGEVVERPASCLKELLENSIDAGASLIDVKIEKGGMKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           S++I    +RH TSKI   +D  +I T GFRGEAL +I +V+ +TL+S+  +   G  + 
Sbjct: 66  SDDIEYVFERHTTSKIKSLEDIFSIKTMGFRGEALCAISSVAKVTLVSKHLEEEQGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +V+ ++AIA+P++
Sbjct: 126 VEGGKVLSKSFCPFKEGTRIVVEDIFYNTPARLKFLKSPSTEQKYCLEVVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESVIGSIFGIEIVKNIVEFSLEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K + S +  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLLSSCVDEAFKNSVITGRFPIVFLFVQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  ++FR+   + N + ++I  ++  + +     LSK  +   +     + H+   +T+ 
Sbjct: 303 KLEVKFRDEQFVYNTVYKAITDSLKSEKMIAKLDLSK--VDDANDAELEQKHIEVLSTNS 360

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            +    +  Q N                E     +  E                YII Q 
Sbjct: 361 NDISLVISEQPN------FFEMFSDKPREVVIEQQGFENFGAGNYKIVGYAFDTYIIVQG 414

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L ++DQHA HER +FE  +    S+ + SQ L  P +  L   +   ++ +      
Sbjct: 415 DDSLYLIDQHAVHERRLFEDFKGQIYSSNVQSQVLAVPVVAQLPSSQKEFVLSNRSIFQN 474

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILATMA 541
           +G + E FG N I +R  PAIL+K      L D+I+ + +      +L    E++L  +A
Sbjct: 475 MGFEIEDFGKNEIVVRTWPAILTKSIDKVFLLDVIEMVYEQMVEDKSLVGISEDLLKRIA 534

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +++   K+  +E   ++  +        C HGRP  +++   DIEK+F R
Sbjct: 535 CRAAVKGNSKISDLEKKEIVELVLVKKEIFHCPHGRPVVVEITKKDIEKMFKR 587


>gi|126179894|ref|YP_001047859.1| DNA mismatch repair protein [Methanoculleus marisnigri JR1]
 gi|166232097|sp|A3CWX7|MUTL_METMJ RecName: Full=DNA mismatch repair protein mutL
 gi|125862688|gb|ABN57877.1| DNA mismatch repair protein MutL [Methanoculleus marisnigri JR1]
          Length = 585

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 180/603 (29%), Positives = 296/603 (49%), Gaps = 31/603 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITDN 59
           KIR L    +NQIAAGE++ERP+  +KEL+EN++DA+S+ +   ++      +  ++TDN
Sbjct: 3   KIRVLDPDTVNQIAAGEVVERPASVVKELLENAIDADSTSILIDVSSDMAAITKIRVTDN 62

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN- 116
           G GMT EE  +A   H TSKI D  D S + T GFRGEAL SI AV+ +TL++RP     
Sbjct: 63  GEGMTPEEAVLAFHPHATSKIRDIADLSAVRTLGFRGEALASIAAVAEVTLVTRPRGGGA 122

Query: 117 -TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
             G ++ + G +I     V    GT + V  LF+  PAR  FLKS   E   +  V+  +
Sbjct: 123 LAGTRLVVRGGEIVEKSEVGAPEGTTIAVERLFYNTPARRKFLKSRNTELAHVYAVVESL 182

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A+ +V+F        R        +G     I+ + G D   + V +  +   + ++G
Sbjct: 183 ALAHGEVAFRVVHNGKERM---ATQRSGGALNTIAGLYGADLARSLVPVEGRLPFLAIRG 239

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y   P+ +RGN +Q  V INGR++  + I + +R  Y   +P  RYPV  L L ID   V
Sbjct: 240 YISRPSESRGNPSQISVSINGRSIASRQIAAAVREGYGTLLPKDRYPVAFLDLAIDTGLV 299

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---TSSVLSKKMISSFHQDNAPK 352
           DVNVHP K  IR      I   I  ++ +A+    ++       + +++I++        
Sbjct: 300 DVNVHPTKREIRLSREREITGAIAAAVDEALAGHDLARETPVEPVQQQIIAADPGQVPTP 359

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
           + + +     T     L L + +L   +                 E             Q
Sbjct: 360 SPVGEPGAPYTAGHRGLTLSDKQLRRTET----------------EGGENLLPAMEPIGQ 403

Query: 413 IHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           +   YI+++  DG L +VDQHAAHER++++++ +  +     SQ L+TP ++ L   E A
Sbjct: 404 VAATYIVAEGADGTLYLVDQHAAHERVLYDQVTEQRD-KAAGSQELITPVVLSLPPKESA 462

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            + +    L   G   + FG +  A+R +PA L     P  +R+ I +++ +  + T  D
Sbjct: 463 ALRDAIPLLADEGFVVDEFGRDTFAVRAVPAALGAVEDPGTVRETIADLL-ADESRTAPD 521

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           R E +   +AC G++++G  +   +  RL+ ++ +      C HGRPT +      ++ +
Sbjct: 522 RRERVTCIVACRGAVKAGALLTPDQQKRLIMQLARTKTPWTCPHGRPTVVAFDRRRLDGM 581

Query: 592 FGR 594
           F R
Sbjct: 582 FRR 584


>gi|323343300|ref|ZP_08083527.1| DNA mismatch repair protein MutL [Prevotella oralis ATCC 33269]
 gi|323095119|gb|EFZ37693.1| DNA mismatch repair protein MutL [Prevotella oralis ATCC 33269]
          Length = 600

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/601 (26%), Positives = 283/601 (47%), Gaps = 15/601 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA +  +  ++   GK+  Q+ D+G G
Sbjct: 5   IQLLPDTVANQIAAGEVIQRPASVIKELVENAVDAGARNIMVLVVDAGKTSVQVIDDGNG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI    D   +HT GFRGEAL SI AV+ + L +R    + G +
Sbjct: 65  MSETDARLSFERHATSKIRKAADLFALHTMGFRGEALASIAAVAQIELRTRLKGEDIGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++ISG K     P +   G+   + +LFF +PAR  FLKS   E N I     R+A+ YP
Sbjct: 125 LSISGSKFMGQEPCSCPEGSNFIIENLFFNVPARRKFLKSNTTELNNIITSFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF   +  S  + +      G   +RI  V G+    + + +   +    +QG+ G P
Sbjct: 185 DISFVLKSNGSELFNLKA----GGLRQRIIDVFGKRLNQDLLPVEVHTTMCNIQGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + Y F+NGR ++  +    +  A+   IP+G      L  ++ P  +DVN+H
Sbjct: 241 ESARKKEPRQYFFVNGRYMKHPYFNKAVLGAFERLIPVGEQVPYFLYFDLPPEDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK---KMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++A+       S          I  F   +       +
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVREAVGLFNDVPSIDFDMQGSPDIPVFDSHSNAAVPKVQ 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-----SEATHYQLGIACAQ 412
           Y  +     ++    +       L    +   +   D  E      +E+       +  Q
Sbjct: 361 YNPAYNPFDKQSQSSKANSDWEQLYEGLEQGNNRQIDMFETDTEKGTESIITDKSPSHYQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
               YI++    GL+I+DQH AH R+++E+     +    +SQ +L PEI+     +  +
Sbjct: 421 YKGRYIMTAVKSGLMIIDQHRAHVRVLYEQYLYRLHDKVASSQKVLFPEIVSFSPSDNII 480

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + +   ++  +G +    G    AI  +PA     NI  L+ D++  I D+ T   + + 
Sbjct: 481 LQKIMPEMTAIGFELSDLGNGDYAINAVPAGTEGVNIVNLVMDMVTSIKDNGTG-VIDEI 539

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            +++  ++A   +I  G+ + + EM  L+  +    N++    G+     L+  +IE + 
Sbjct: 540 DKSMALSLARNAAIPQGQVLNNEEMENLINSLFACSNANYSPDGKNILCILRQQEIEHML 599

Query: 593 G 593
           G
Sbjct: 600 G 600


>gi|288929629|ref|ZP_06423473.1| DNA mismatch repair protein MutL [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329134|gb|EFC67721.1| DNA mismatch repair protein MutL [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 607

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 164/609 (26%), Positives = 283/609 (46%), Gaps = 24/609 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+EN++DA ++R++  +   GK+  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASIIKELVENAVDAGATRIDVNVMDAGKTSVQVIDNGRG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI    D   ++T GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLAFERHATSKIRQASDLFALNTMGFRGEALASIAAVAQVELKTRLASEEIGTS 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I+I+G + +   P A   G+   + +LF+ IPAR  FLKS   E N I     R+A+ YP
Sbjct: 125 ISIAGSQFTGQEPCACPVGSNFVIENLFYNIPARRKFLKSNATELNNIITAFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  +  + +          +RI  V G+    + +  N +++   + G+ G P
Sbjct: 185 DIAFTLRSNGTEVFNLPSVV----LKQRIVDVFGKRISQDLLSFNVETSICKIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +   +   +P G      +  E++P  +DVN+H
Sbjct: 241 ESARKKGAHQYFFVNGRYMKHPYFNKAVMQPFERLMPQGEQVPYFIYFEVNPEDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------KMISSFHQDNAPKTH 354
           P K+ I+F N   +   +  ++++A+       +            + +      APK +
Sbjct: 301 PTKTEIKFENEQAVWQILSAAVREAVGLFNDVPTIDFDTEGRPDIPVYNPNENAPAPKVN 360

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE---------ESEATHYQ 405
              +     +T +     +N     DL          D              E+E     
Sbjct: 361 YNPHYNPFDDTPQAALQTKNNSRWEDLYAGLKADEEADLGLFPDVGSGGQSGETERMIED 420

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
              A  Q    Y+++    GL+++DQH AH R++FE+  +  +     SQ +L PE++  
Sbjct: 421 KSPAHYQYKGRYVMTAVKSGLMVIDQHRAHVRILFEQYLRQVSQRSGASQKVLFPEVVQF 480

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E  +  +   DL  LG +    G    A+  IPA L   N   ++RD++   ++   
Sbjct: 481 TATEDLMAQKIMPDLQGLGFELTDLGARNYAVNAIPAGLEGINPVAMIRDMVATAMEKGA 540

Query: 526 TYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
              L D I   LA ++A   ++  G+ + + EM  L+  +    N +   +G+     + 
Sbjct: 541 G--LHDEINEALALSLARNAALPYGQVLGNDEMESLVNALFTCQNVNYTPNGQKILAIMA 598

Query: 585 LSDIEKLFG 593
            +D+EKL G
Sbjct: 599 QTDLEKLLG 607


>gi|333029336|ref|ZP_08457397.1| DNA mismatch repair protein mutL [Bacteroides coprosuis DSM 18011]
 gi|332739933|gb|EGJ70415.1| DNA mismatch repair protein mutL [Bacteroides coprosuis DSM 18011]
          Length = 627

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/629 (27%), Positives = 294/629 (46%), Gaps = 43/629 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA +  ++ +I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGAKNIQIIINDAGKTCMQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI  + D   + T GFRGEAL SI AV+ + L+++      G +
Sbjct: 65  MSEIDARLAFERHATSKINKATDLFALRTMGFRGEALASIAAVAQVELLTKTDNEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG K      VA N G+   +++LF+ IPAR  FLK++  E + I +   R+A+  P
Sbjct: 125 VFISGSKYEGQEAVATNTGSHFIIKNLFYNIPARRRFLKTDATELSKILNEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSF+  + ++  + +          +RI  + G+      + ++  +  I + GY   P
Sbjct: 185 EVSFSLFSNETELFNLP----ETQIRQRIIHLFGKKLNQELLSVDVDTTLIKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      + F+NGR +   +    +  AY E IP+G      L  ++DP  +DVN+H
Sbjct: 241 EASRKRGAHQFFFVNGRYMHHPYFYKAVMEAYEELIPVGDQISYFLYFDVDPATIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   I   +++ + K     S          I +F            
Sbjct: 301 PTKTEIKFENEQAIWQIIAAGVKETLGKFNEVPSIDFDTEGMPDIPAFDDTEPVAIPQVH 360

Query: 358 YATSLTNTQ--------------------EKLFLQENRLSTNDLLPSDDPTYSEDNDP-- 395
             T     Q                    E L+    R S  +  P  D T S   +   
Sbjct: 361 VNTDFNPFQANGGGGSSAPSSYQRKEIDWEPLYAGLERGSKVNTPPPADFTMSNLVESGV 420

Query: 396 ---------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                     EE E+ +Y+ G    Q    YI++    GL+I+DQH AH R++++K    
Sbjct: 421 VESKASPSLYEEQESKNYEKGSTLLQFKGRYILTSVKSGLMIIDQHRAHIRVLYDKFIDQ 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               K ++Q +L PEIIDL   + A++    ED   +G +    G  + AI  IP  +  
Sbjct: 481 IKQKKGSAQGVLFPEIIDLPASQAAVLESIKEDFAAVGFELTNLGGGSYAINGIPEGIEG 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREME 565
            +   L+  +++   +      +++ +++IL+ T+A   +I  G+ + S EM+ L+  + 
Sbjct: 541 LDPVDLVLKMLE--TEMEKGGDVKEEVQSILSLTLAKSAAIVYGQVLSSEEMSSLVDALF 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              + +    G      +   +I+K F R
Sbjct: 599 ACVSPNYTPDGLSVLSTIMDEEIDKRFER 627


>gi|312127452|ref|YP_003992326.1| DNA mismatch repair protein mutl [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777471|gb|ADQ06957.1| DNA mismatch repair protein MutL [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 588

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 169/593 (28%), Positives = 294/593 (49%), Gaps = 15/593 (2%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL E++ + +AAGE++ERP+  +KEL+ENS+DA +S ++  I  GG    ++ DNG G+ 
Sbjct: 6   KLPEQLTHILAAGEVVERPASCLKELLENSIDAGASLIDVKIEKGGIKRIEVYDNGKGIH 65

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++I    +RH TSKI   +D  +I T GFRGEAL +I +V+ +TL+S+  +   G  + 
Sbjct: 66  PDDIEYVFERHTTSKIKSFEDIFSIKTMGFRGEALCAISSVAKVTLVSKHLEEEQGCMVK 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           + G K+ S        GT + V D+F+  PARL FLKS   E     +V+ ++AIA+P++
Sbjct: 126 VEGGKVISKSLCPFKEGTRIVVEDIFYNTPARLKFLKSPSTEQKYCLEVVEKIAIAWPEI 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           SF        +    F   +      I  + G + + N VE + +   + + GY   PT 
Sbjct: 186 SFRAEADGKRQ---IFTPGDNKIESVIGSIFGIEIVKNLVEFSLEKESLKVWGYFVNPTV 242

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           +R   + ++ ++N R ++ K + S I  A+  ++  GR+P+V L ++I P ++DVNVHP+
Sbjct: 243 SRATRSGYHFYVNRRYIKSKLLSSCIDEAFKNSVITGRFPIVFLFIQIPPSEIDVNVHPS 302

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  I+FR+   + N I ++I  ++  + +   + LSK  + +        T +    ++ 
Sbjct: 303 KLEIKFRDERFVYNTIYKAIADSLKSEKMIPKADLSKVDVGNDTVRERKYTEVLSANSND 362

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            +           +S             E     +  E                YII Q 
Sbjct: 363 ISL---------VISEQPNFFEMFSKREEVAIEQQSFENFDAGNYKIVGYAFDTYIIVQG 413

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L ++DQHA HER +FE  +    S+ + SQ L +P ++ L   +   ++ +     +
Sbjct: 414 DDSLYLIDQHAVHERRLFEDFKSQVYSSNVQSQVLASPVVVQLPSSQKEFVISNVSVFQK 473

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENILATMA 541
           +G + E FG N I +R  P +LS       L D+I+ I        +L +  E++L  +A
Sbjct: 474 IGFEIEDFGKNEIVVRTWPVLLSSNIDAIFLLDVIEMIYQQMVENKSLVEISEDLLKRIA 533

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +++   K+  +E   ++  +        C HGRP  +++   +IEK+F R
Sbjct: 534 CRAAVKGNSKISDLEKKEIVELVLIKKEIFHCPHGRPVVVEISKREIEKMFKR 586


>gi|294507734|ref|YP_003571792.1| DNA mismatch repair protein mutL [Salinibacter ruber M8]
 gi|294344062|emb|CBH24840.1| DNA mismatch repair protein mutL [Salinibacter ruber M8]
          Length = 784

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/651 (27%), Positives = 302/651 (46%), Gaps = 60/651 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  +S+++ NQIAAGE+++RP+   KELIEN+LDA +S +E ++   G +  Q+ D+G G
Sbjct: 135 IEVMSDRLANQIAAGEVVQRPASVAKELIENALDAGASSIEVLLKDAGSTLVQVIDDGCG 194

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M   +     +RH TSK+   DD   I T GFRGEAL SI AV+ +TL ++  +++ G  
Sbjct: 195 MGPGDAERCFERHATSKLRSVDDLERIRTLGFRGEALASIAAVAQVTLKTKRVEDDAGTL 254

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G +    RP A+  GT V VR+LFF +PAR NFLK+   E   +T  ++ +A+A P
Sbjct: 255 VRVEGGEQVEKRPCAIPNGTSVAVRNLFFNVPARRNFLKTPATELKHLTQTVQSLALANP 314

Query: 181 KVSFTFSTIKSNRYKMNFQS---TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             +          Y +        +     RI  + G D  +  V + ++S+++ L+G+ 
Sbjct: 315 DTAVRLEHDGHEHYDLPAAPDSDWHAATRARILGLFGGDHEDELVAVEDESSDLRLRGFV 374

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+F+R    + ++F+NGR V D+++   ++ AY E +P G +P   L L ++P +VDV
Sbjct: 375 GAPSFHRKTRGEQFLFVNGRAVTDRYLSHAVKKAYGELVPDGAFPFFALFLAMNPERVDV 434

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK----- 352
           NVHP K  ++F + + I  F+  ++++A+ +  +S           +      P+     
Sbjct: 435 NVHPQKEEVKFDDQSGIYGFLRSAVRRALGRVHVSPQMDDGDDEADNEEDSPGPESDGTG 494

Query: 353 ----------THLPKYATSLTNTQ--------------------------EKLFLQENRL 376
                     T  P+   +    Q                          E   +     
Sbjct: 495 SGGHAVSGDGTSSPRPTPTSFQPQRSSGDATDSSGRSSSGPSPQSPKPRPENPSVSPGDQ 554

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLG-------------IACAQIHQNYIISQTT 423
           S       D    S   D                               +H  Y+++ T 
Sbjct: 555 SDALYRRPDGGDESSPGDAPASPPHREGGSSSTSAADGAERSGRRPVWGLHDTYVVTPTE 614

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            G+++VDQ AAH R+++E+ R      +  SQ LL P  +DL   E  L+ E  +DL  L
Sbjct: 615 TGMMLVDQRAAHLRVLYERARAHLRDQQGASQRLLFPHTVDLSPAEVELLDELRDDLDAL 674

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + ER     +++R +PA +   N   +L +++++   S+      +R E++  TMA  
Sbjct: 675 GFELERLSGRTVSVRGVPADVPDGNEDTILEELLEQYR-SAQDAVEDERREHLAKTMAQR 733

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  G+ +   E   LL ++           G PT +KL + ++   FGR
Sbjct: 734 SAVDRGQPLSEEERRALLDDLFDCEMPYADPTGTPTIVKLSMEELADRFGR 784


>gi|219851577|ref|YP_002466009.1| DNA mismatch repair protein [Methanosphaerula palustris E1-9c]
 gi|219545836|gb|ACL16286.1| DNA mismatch repair protein MutL [Methanosphaerula palustris E1-9c]
          Length = 603

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 177/604 (29%), Positives = 292/604 (48%), Gaps = 19/604 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV--ETVIAGGGKSFFQITDNG 60
           IR+L +  INQIAAGE+IERP+   KELIEN++DA + ++  E     G  +  +I DNG
Sbjct: 6   IRQLDQATINQIAAGEVIERPASVAKELIENAIDAGADQIRCEVTTENGEITRIRIVDNG 65

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM+ E+  +A   H TSK+   DD S IHT GFRGEAL SIGAVS + L++R  ++ +G
Sbjct: 66  RGMSREDAAIACLPHTTSKLRTLDDLSTIHTMGFRGEALASIGAVSAMMLVTRQKESTSG 125

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +++I G  I  V       GT V V DLF+  PAR  F KS + E   +  ++ R+A+A
Sbjct: 126 TRVSIRGGAIDEVAEAGSALGTTVTVDDLFYNTPARKKFQKSLKTELGHLYGIVERIALA 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P + F     +  R      S   N  + I  + G +     + ++     + ++G+  
Sbjct: 186 NPGIGFRLLLNRRGRITTQRSS---NKRDTIVGLYGPELARGLIPVSASDGPVQIEGFIS 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  +R    Q ++ IN R + ++ +L+ IR  Y   +P  RYPV  L L ID   VDVN
Sbjct: 243 PPAISRLEPYQVHLSINRRDIYNRALLNAIREGYGTLLPKDRYPVAFLDLTIDTTLVDVN 302

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-----QDNAPKT 353
           VHPAK  +R      +   +   I+ A+++  +    +                     +
Sbjct: 303 VHPAKRQVRLDQEQTVTAAVTAMIRAALDEADLLYRPITYHPAGQKAEGVGETNALYAGS 362

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ--LGIACA 411
                  +   +      +  + +   LL +     +      EE    H          
Sbjct: 363 SGAARTGTPAPSSSPSPRRLQQTTAPRLLTTQQLRLTSRPVSPEEGAPGHSNLPEMRVLG 422

Query: 412 QIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           Q+   Y+I++T D  L ++DQHAAHER++++++R+   +  + +Q L+TP ++ +   E 
Sbjct: 423 QVANTYLIAETPDQTLCLIDQHAAHERILYDQIRR---NRTVQTQELITPVLLTVTLQEA 479

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             I E      R G + E FG ++ A+  +P I  +   P+ +R+II  +I         
Sbjct: 480 EAIREATPIFEREGFRIEEFGRDSFAVSAVPVIFGRIEDPEQVREIIAGVIGEEPGDQTA 539

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            R   I + +AC G++++G  + + +  +LL ++    +   C HGRPT ++  L  +  
Sbjct: 540 TR-NAITSRVACRGAVKAGAALTNEQGEQLLAQLAATEDPFTCPHGRPTVVRFTLEQLAA 598

Query: 591 LFGR 594
           LF R
Sbjct: 599 LFLR 602


>gi|325285173|ref|YP_004260963.1| DNA mismatch repair protein mutL [Cellulophaga lytica DSM 7489]
 gi|324320627|gb|ADY28092.1| DNA mismatch repair protein mutL [Cellulophaga lytica DSM 7489]
          Length = 626

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/628 (24%), Positives = 297/628 (47%), Gaps = 43/628 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA ++ ++ +I  GGKS  Q+ DNG G
Sbjct: 5   IKLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGATSIKLIIKDGGKSLIQVVDNGIG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  ++ +RH TSKI  ++D  N++T GFRGEAL SI A++ + L ++      G  
Sbjct: 65  MSATDARLSFERHATSKIQSAEDLFNLNTKGFRGEALASIAAIARVDLQTKTANEEIGTA 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G +I S   VA   GT + V+ LFF IPAR NFLKS+ VE   ITD   R+A+A+P
Sbjct: 125 IEIEGSEIKSQEVVATPQGTSLAVKHLFFNIPARRNFLKSDAVELRHITDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F +    S  + +       NF +RI  + G+      V +NE +  + + G+    
Sbjct: 185 SIAFNYYNNGSELFNLP----ESNFRQRIVNIFGKKSNEKLVPVNEDTQVVKVSGFICKS 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + Y F+N R ++  ++   +  A+   I  G +P   L LE+DP  +D+N+H
Sbjct: 241 EFAKKSRGEQYFFVNNRFIKSHYLHYAVLAAFEGLIKPGTHPGYFLNLEVDPSSIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-------------------- 340
           P K+ ++F +   +   +  +I+ ++ +  ++ +                          
Sbjct: 301 PTKTEVKFDDEQTLYAILRSTIKHSLGQFNVAPTLDFDHDSNLQTPYEYKNKNAVLPKVT 360

Query: 341 ---MISSFHQDNAPKT----------HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                + F ++  P T              Y      + E L+++               
Sbjct: 361 VDSTFNPFAEETKPTTASNSPSASSSSFSSYKKPSPQSWESLYVETPNTEVKSTGFEGVS 420

Query: 388 TYSEDNDP-VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
             SE +   + +             Q+ + YI++    G+V++DQ  AH+R+++EK  + 
Sbjct: 421 FESEVSAKSIFDDTEDDLDTSAITFQLKRKYIVTTIKSGMVVIDQGRAHQRVLYEKFLRT 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +  SQ LL P  +     E  ++ +  ++L  +G    +   N + I  IP ++++
Sbjct: 481 VTLNEGLSQQLLFPIQLSFSLAEIDILKDIKDNLTTMGFVFGQINENIVEINGIPPMVAE 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG-SIRSGRKMQSIEMNRLLREME 565
             +  +  +++ +   +           +IL+   C   ++++G  +  +    L+ ++ 
Sbjct: 541 AEVDTIFDELMADCQQNVGADGFSQA--DILSKALCKSLAVKTGDVLDKLSQAALVNDLF 598

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
               S      +P ++ +  +DI+K F 
Sbjct: 599 ACTESMVSPFNKPIYVTITENDIDKKFM 626


>gi|253316433|ref|ZP_04839646.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 669

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/671 (22%), Positives = 283/671 (42%), Gaps = 84/671 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +R      +   I+  IQ+A   + +   + L      +        +    + 
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLYSFEQQKIEFEQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSD------------------------DPTYSEDND 394
             +  N QEK F  E   S + +  +                         D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKSFMAENQNDEIVIKEDSYNPFVTKTSESLITDDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E+ E    +      ++ Q +  ++    +   +  A+ +      ++   +      
Sbjct: 419 TCEKDEDYFKKQQEILQEMDQTFDSNEDAS-VQNYENKASDDYYDVNDIKGTKSKDPKRR 477

Query: 455 QTLLTPEII-----------------------------DLLEGECALIMEHDEDLHRLGI 485
              +                                     +    +  E  + L  L  
Sbjct: 478 IPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTF 537

Query: 486 KA----------------------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                                   E FG +   +   P    K  + ++++D+I+ I++ 
Sbjct: 538 HFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEE 597

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I  
Sbjct: 598 KKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINF 656

Query: 584 KLSDIEKLFGR 594
              ++EKLF R
Sbjct: 657 SKYELEKLFKR 667


>gi|300728333|ref|ZP_07061698.1| DNA mismatch repair protein MutL [Prevotella bryantii B14]
 gi|299774398|gb|EFI71025.1| DNA mismatch repair protein MutL [Prevotella bryantii B14]
          Length = 640

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 161/641 (25%), Positives = 288/641 (44%), Gaps = 55/641 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+ENS+DA +  ++ ++   G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENSVDAGAKSIQVLVVDAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  +DD   +HT GFRGEAL SI AV+ + L +R    + G Q
Sbjct: 65  MSDTDARLSFERHATSKIKKADDLFALHTMGFRGEALASIAAVAQIELKTRQASEDIGTQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++ISG K     P +   G+  ++ +LFF +PAR  FLKS   E N I     R+ +  P
Sbjct: 125 LSISGSKFIGQEPCSCPIGSNFKIENLFFNVPARRKFLKSNTTELNNILTAFERIVLVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F+  +  +  + +      G+   RI  + G+    + + +N +++   + G+ G P
Sbjct: 185 NIHFSLYSNGTEMFNLQP----GSIRHRILDIFGKRLNQDLLPVNVETSLGKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    + +A+   +PLG      +  ++DP  +DVN+H
Sbjct: 241 ESARKKGAHQYFFVNGRYMKHPYFNKAVMSAFDRLVPLGEQVPYFIYFDVDPHNIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS-------SFHQDNAPKT 353
           P K+ I+F N   I   +  ++++A+       +     +          S +Q +AP+ 
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKEAVGLFNNVPTIDFDTEGKPEIPVFGESGNQLSAPRV 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLL------------------------------- 382
           +         ++ E L  Q+                                        
Sbjct: 361 NYNPSYNPFESSSEDLVSQDGEQQIGQTFASKIDSNYAAITQGEIFESKQARVPEEWGKL 420

Query: 383 ----------PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                        D   S  N  VE  E           Q    YI++    GL+I+DQH
Sbjct: 421 YEGLKSKTVSQEGDIFESRQNTVVESKEHLVEDKSPLHYQYKAKYIMTAVKSGLMIIDQH 480

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
            AH R+++E+ ++        SQ +L PE +     +  ++ +   D+  +G +    G 
Sbjct: 481 RAHVRILYEQYQKQLIEHTFQSQKVLFPETVRFTPSQQVVLQDIFSDMVDMGFELTDLGG 540

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
            + A+  IP  L   N   L+ DI+   ID   +   ++  +++  ++A   +I  G+ +
Sbjct: 541 GSYAVNAIPMGLDGINPITLVEDIVHSAIDMGKSMK-EEMRQSLSLSLARNAAIPQGQIL 599

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            + EM  ++  +    N +    G+     L   +I+ LFG
Sbjct: 600 SNEEMEAIVNGLFACSNPNYAPDGKSILCILTQQEIDHLFG 640


>gi|332638522|ref|ZP_08417385.1| DNA mismatch repair protein MutL [Weissella cibaria KACC 11862]
          Length = 665

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 170/650 (26%), Positives = 302/650 (46%), Gaps = 62/650 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +LS+ + NQIAAGE+IERP+  +KEL+EN++DA S +++ ++   G    +I D+G G
Sbjct: 4   IHELSDILANQIAAGEVIERPASVVKELVENAIDANSQQIDILVEEAGVKSIRIIDDGDG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++++  A  RH TSKI   +D   +H+ GFRGEALPSI +V+ + L +       G +
Sbjct: 64  IDADQVTKAFLRHATSKITSRNDLFRVHSLGFRGEALPSIASVADVVLETATAGAEQGKR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++          GT + V D+FF  PARL +LKS+  E   I DVI R+A++YP
Sbjct: 124 VHYKGGELLEEIGTGARKGTDITVSDIFFNTPARLKYLKSQSTELAQIVDVINRLALSYP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F  S   +   +    + NGN  + I+ + G         +  + N+  + GY  +P
Sbjct: 184 EIGFRLSHNGNEVMR---TAGNGNLQQVIAAIYGVQQARKMQAIQAEDNDFEVSGYISLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +   V INGR +++  +   +   Y   + +GR+P+ VL + +DP  VDVNVH
Sbjct: 241 ELTRASRSYISVLINGRYIKNYNLTKALIKGYGSKLMVGRFPIAVLQITMDPLLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-----------------------VL 337
           P K  +R    + +   I Q++++    + +  ++                         
Sbjct: 301 PQKHEVRLSKESQLMALIEQAVKERFANENLIPNAYENYLGEEQNAAENDAAFIAQLNDA 360

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL--------------QENRLSTNDLLP 383
           S+  +SS+  ++ P   +P          +   +              Q   +S      
Sbjct: 361 SQPYVSSYAPESTPDHPVPMTPADYEKLADNFSVSDVTPVVVHHAEELQGTAVSEFATKY 420

Query: 384 SDDPTYSEDND-------------------PVEESEATHYQLGIACAQIHQNYIISQTTD 424
            D    +  ++                      +     +       Q+H  ++ +Q+ +
Sbjct: 421 QDGADINPFDEGGTAMVAEQKSLDLTDDSIQAVDEHGQTFPKLDYIGQMHGTFLFAQSEE 480

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL ++DQHAA ER+ +E  R++     +  Q LL P +++  + +   I  H+ +L ++G
Sbjct: 481 GLYLIDQHAAQERVKYEYYREEIGKVGLEMQKLLVPIVLNYPKIDILKIQSHEVELAQVG 540

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           +  E FG +A+ +RE P    K      +R+++D I+    + T+    E     MAC  
Sbjct: 541 LHLEPFGDDAVIVREHPGWFEKGQEEDTIREMVDWILRDG-SLTVAQFRERTAIMMACKR 599

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           SI++   M   E   LL ++  + N   C HGRP  +     D++K+F R
Sbjct: 600 SIKANWSMNDFEAKGLLDQLSHSENPYNCPHGRPVLVTFSTLDMQKMFKR 649


>gi|255994618|ref|ZP_05427753.1| DNA mismatch repair protein MutL [Eubacterium saphenum ATCC 49989]
 gi|255993331|gb|EEU03420.1| DNA mismatch repair protein MutL [Eubacterium saphenum ATCC 49989]
          Length = 634

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 169/636 (26%), Positives = 305/636 (47%), Gaps = 49/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + ++IAAGE++E P   +KEL+ENS+DA +  +   I G G  + +++D+G G
Sbjct: 2   IRILDKNVSDKIAAGEVVESPLSVVKELVENSIDAGAKSIAVQIKGNGSDYIRVSDDGCG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+  A +RH TSK+    D +N+HT GFRGEAL SI  VS + + ++  ++  G +
Sbjct: 62  IAGDEVETAFKRHATSKLEKFSDLNNLHTLGFRGEALASIAKVSGVIMYTKRREDPLGTE 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +   ++     +A++ GT + V+DLFF IPAR   L  ++ + N I + I RM+I Y 
Sbjct: 122 LVLEAGEVIKKEDIAVDDGTGIIVQDLFFNIPARKKDLSYKRAKKNEIAEFINRMSIYYS 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF     +     +     NGN  + ++Q+ G D+    V+++E++  IT+ G     
Sbjct: 182 DISFRLKVDEEL---LYVTEGNGNRRDVLAQIYGADYAARLVQVDEEAFGITVSGLVSPQ 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +  + ++  +FINGR ++  F+   I+  Y++ I   RYP   LL+ +    +DVN+H
Sbjct: 239 GDSYKDTSRQMIFINGRAIRSAFLEGIIKKEYSDIIMGERYPSYFLLVNLPGVDIDVNIH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN----------- 349
           P K  I F +   ++N I+++++KA + K I  S+ ++    S    D            
Sbjct: 299 PNKKEILFLDKAKVKNAIVKTLEKAFSGKEIIQSTPINADFKSFVKDDYVDIGSSKQSNI 358

Query: 350 -------APKTHLPKYATSLTNTQEKLFL-------QENRLSTNDLLPSDDPTYSEDNDP 395
                  + +      A+S    +E + +       +E+     D    ++  + E    
Sbjct: 359 EEVFEKDSSEGFSYSAASSEAEFREAVNIGYRGHEGRESAFPPADKNVPEEEAFREAIRC 418

Query: 396 VEESE-----------------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
            ++ E                             I   YI+++  +   ++DQHAAHER+
Sbjct: 419 EQQRESLREVEHAAVEGKPVNLPYDIAALEPMGVIFDTYILARDDEAFYMIDQHAAHERV 478

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +EK+  +F S    +Q L+ P I  L     +        L  LG + + FG   + I 
Sbjct: 479 FYEKLLGEFLSKDKDTQRLIAPIIKSLSAEADSNKKNIMSRLSELGFEVDDFGEKTLRIF 538

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            IP+ + ++     L D +  +      Y   +R  + +A+ AC  +++    ++  E+ 
Sbjct: 539 GIPSFMKEEEAQGFLDDYL--MSTQGFGYDEDERQLDRIASKACKAAVKGRDVLKGDEIK 596

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            L+  + K      C HGRPT I+++  DIEK+F R
Sbjct: 597 ALILSLAKCKQPLACPHGRPTMIRMREYDIEKMFKR 632


>gi|269118665|ref|YP_003306842.1| DNA mismatch repair protein MutL [Sebaldella termitidis ATCC 33386]
 gi|268612543|gb|ACZ06911.1| DNA mismatch repair protein MutL [Sebaldella termitidis ATCC 33386]
          Length = 621

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 181/634 (28%), Positives = 315/634 (49%), Gaps = 58/634 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E + N IAAGE++E P+  IKEL+ENSLDA +  V+  +  GGK   +I+DNG 
Sbjct: 3   KIKILDESVSNIIAAGEVVENPASMIKELLENSLDAGADSVKIEVFNGGKD-VKISDNGS 61

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ ++++RH TSKIS  DD  N+ T+GFRGEAL SI +VS +T+ ++  ++N G 
Sbjct: 62  GMEKNDMMLSIERHATSKISTKDDIFNLMTYGFRGEALASISSVSKMTISTKTKESNVGY 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++      I +V  ++ N GT +E+RDLF+  PAR  FL+ E  E N I D++ + A+  
Sbjct: 122 KLTAYAGSIRNVEEISRNNGTEIEIRDLFYNTPARKKFLRKESTEYNKIRDIVLKEALVN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
              +FT         K    ++       I ++ G++ + N  +           GY G 
Sbjct: 182 YDTAFTLIFDDKPSIK----TSGKGIENTILELFGKNVLKNLKKFE--------HGYLGS 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + +  + ++N R V+   I   +   Y   +  G+YP  V+ L  DP+++DVNV
Sbjct: 230 VEILRSSKDYIFTYVNKRYVKSNTIERAVLDGYYTKLMKGKYPFAVIFLNTDPKEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKA--------------INKKGISTSSVLSKKMISSF 345
           HP+K  ++F N  II   I  ++                 + K+ ++ S+   +K+ + F
Sbjct: 290 HPSKKIVKFSNDKIIYTQIKSAMDDYFYLEERREWQPNIDLLKQNVNISAAEPEKIENLF 349

Query: 346 HQDNAPKTHLPKYA-----------------------TSLTNTQEKLFLQENRLSTNDLL 382
             +     +   ++                       T +T  ++  F++EN  +     
Sbjct: 350 SDETLKGENKQFFSLETLDNRDVETRIIDERPKKAIETLITEPEDSDFIRENIKTDYPSY 409

Query: 383 PSD--DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             +  +   SE      E      +      QI   YI+ +  + L I DQH  HER+++
Sbjct: 410 KEESKENNVSESIQKSSEENIKKPEDYKIIGQIFNMYILVENKNQLEIYDQHIIHERILY 469

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           E++++ F S K+  Q L+ P+ I+L   +  L+ME+ E     G   + FG N I +R +
Sbjct: 470 EELKEKFYSKKLDFQNLIIPQKIELTSPDKNLVMENIEVFRDFGFDVDEFGENEIILRSV 529

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PA   + +I  +  D++ ++ +      ++D  E I+ +M+C G+I++G+K+   E++  
Sbjct: 530 PAFDFRDSIKNVFMDLLADLKND---IEVKDLRERIIISMSCKGAIKAGQKLDPDEISSF 586

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +R + +      C HGRP  I +   D++K+FGR
Sbjct: 587 IRRLHEIGK-YTCPHGRPIIINIPKDDLDKMFGR 619


>gi|146297976|ref|YP_001192567.1| DNA mismatch repair protein MutL [Flavobacterium johnsoniae UW101]
 gi|189030399|sp|A5FNH2|MUTL_FLAJO RecName: Full=DNA mismatch repair protein mutL
 gi|146152394|gb|ABQ03248.1| DNA mismatch repair protein MutL [Flavobacterium johnsoniae UW101]
          Length = 644

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 168/643 (26%), Positives = 305/643 (47%), Gaps = 58/643 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA+++ ++ +I   GKS  Q+ DNG G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELLENAVDAKATDIKLIIKDAGKSLVQVIDNGVG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT  +  +   RH TSKI   +D  ++ T GFRGEAL SI A++H+ + ++  Q+  G  
Sbjct: 65  MTVTDARLCFARHATSKIRQAEDLFSLGTKGFRGEALASIAAIAHMEMKTKQEQDELGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G K  S     +  GT   V++LFF IPAR NFLKS+ VE   + D  +R+A+A+P
Sbjct: 125 IVIEGSKFVSQEVAVLPKGTSFAVKNLFFNIPARRNFLKSDTVEFRHVMDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F+F    S  Y +        + +RI  ++        V +NE +  I++QG+   P
Sbjct: 185 NIHFSFYHNGSELYNLPA----AGYRQRIVGIMSGKTNEKLVPVNEDTEIISIQGFVCKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + N  + + F+N R ++  ++   +  AY   +  G  P   L L++ P  +D+N+H
Sbjct: 241 EFAKKNRGEQFFFVNDRFIKSGYLHHAVMAAYDGLLKDGSQPSYFLYLQVPPNTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST--------------------SSVLSKK 340
           P K+ I+F +   +   +  SI+ ++ +  ++                     + V + +
Sbjct: 301 PTKTEIKFDDEQALYAILRASIKHSLGQFNVAPVLDFDRDSNLDTPYHYKDVEAEVPTIQ 360

Query: 341 MISSFHQDNAPKTHLPKYAT-------------------------------SLTNTQEKL 369
           +  +F+     KT+                                       T + E L
Sbjct: 361 VDGTFNPFTDDKTNQHYTKAGSGSGSGYSSGSSSSSGSGSGSSYSGYSKRVEPTVSWESL 420

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
           ++  +  +   +  S     +E+      ++    Q      QIH+ YI+S    G+VIV
Sbjct: 421 YVGLDTENPETIESSPFIFENEEVTSSLFNDDEVEQASQKTYQIHKKYIVSPIKSGMVIV 480

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQH AH+R+++E+   +    + +SQ LL P  +     E  LI E    L   G   E 
Sbjct: 481 DQHRAHQRILYEQFLLNMTVNQASSQQLLFPLDLFYSSSEMKLIEELKPSLETTGFVFEE 540

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
              + + I  IP  +++  +  ++  ++ ++ D     +   + + I  +MA   ++++G
Sbjct: 541 AQTDHVVISGIPVNITESEVSLVIEQLLSDLQD-GIPASSYSQNDTIAKSMAKSLAVKTG 599

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
             +   E + L+  +    + +     +PTFI +++ DI+K F
Sbjct: 600 SYLTEKEQDNLVNGLFACKDPNISPFQKPTFITMRVEDIDKKF 642


>gi|332829604|gb|EGK02250.1| hypothetical protein HMPREF9455_01520 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 619

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 169/615 (27%), Positives = 296/615 (48%), Gaps = 30/615 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RPS  +KEL+EN++DA +  ++ +I   G++  Q+ DNG G
Sbjct: 11  IHLLPDSIANQIAAGEVIQRPSSVVKELVENAIDAGADTIQLIIKDAGRTLVQVIDNGKG 70

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ ++ MA +RH TSKI   DD   +HT GFRGEALPSI A++ + + +R  ++  G  
Sbjct: 71  MSATDVRMAFERHATSKIRSADDLFALHTMGFRGEALPSIAAIAQVEVKTRREEDELGTL 130

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG K+ +   +A   G+   V+++FF +PAR  FLKS   E   I   + R+ +  P
Sbjct: 131 LQISGSKVETQECIACPKGSNFSVKNIFFNVPARRKFLKSNDTERRNILTELERIVLVNP 190

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F+F+       +        N  +R+  V+G++F    + ++  ++ + ++G+ G P
Sbjct: 191 GIEFSFTDNDIEALRYPAC----NLRQRVVNVVGKNFNQQLISIDIDTSLVKIKGFVGKP 246

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  A+   IP G  P   +  +++P  +DVN+H
Sbjct: 247 ESARKTRALQYFFVNGRYMRHPYFNKAVTAAFEPLIPSGENPNYFIYFDVEPDTIDVNIH 306

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL----- 355
           P K+ I+F N   I   +  ++++A+ K     +              +  K        
Sbjct: 307 PTKTEIKFENEQPIWQILSAAVKEALGKFNEVPTIDFDTTDAIDIPIHDPSKNVSQPRVN 366

Query: 356 --PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ- 412
             P Y    +      + ++N          +    S + D   +++   +         
Sbjct: 367 INPSYNPFKSPVSNSGYQRQNVDWEKFYEGFEKDKGSSNLDIEPDTDVNIFGHSSDPGMN 426

Query: 413 -------------IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                            YI++    GL+++DQH AH R++F++        +  SQ  L 
Sbjct: 427 TSSVSTEMVVHYQYKNKYILTSVKSGLMLIDQHRAHVRILFDQFIAQIRQKRGISQRALF 486

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+II+L   E A+I    +DL  +G      G NA AI   P+ ++  +  QL+ ++I  
Sbjct: 487 PDIIELSPSEAAMIPYLMDDLEAVGFDLSHLGNNAYAINGTPSEITNVDPVQLVHNMISR 546

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
            +DS  +   ++  E++  +MA   SI  G K+   EMN+++ ++  +P       G+ T
Sbjct: 547 SVDSG-SDVKEEIQESLALSMANAASIPYGHKLSDEEMNKIVDQLFASPAHKHTPDGK-T 604

Query: 580 FIKLKLSD-IEKLFG 593
            I L   D IEK+F 
Sbjct: 605 IISLLEDDVIEKMFR 619


>gi|313204195|ref|YP_004042852.1| DNA mismatch repair protein mutl [Paludibacter propionicigenes WB4]
 gi|312443511|gb|ADQ79867.1| DNA mismatch repair protein MutL [Paludibacter propionicigenes WB4]
          Length = 614

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 158/612 (25%), Positives = 300/612 (49%), Gaps = 24/612 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  +KEL+ENS+DA ++ ++ +I   G++  Q+ DNG G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVLKELVENSIDAGATFIQILIKDAGRTLIQVVDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI  +DD  ++ T GFRGEAL SI AV+ + L +R  ++  G  
Sbjct: 65  MSETDARMAFERHATSKIKNADDLFSLRTMGFRGEALASIAAVAQVELRTRRAEDELGVL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++     V  + GT  +V++LFF +PAR  FLKS+ VE + I     R+A+   
Sbjct: 125 VEIAGTRVFKQESVQCDLGTSFQVKNLFFNVPARRRFLKSDNVEKSHILTEFYRIALVNT 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F+F       +++   +          +   + +    + +   +N +++ GY G P
Sbjct: 185 SVAFSFFDGDEEIFQLPASNNKIRIENIFGKSAKKRWQQQLLSIETSTNLVSIFGYVGKP 244

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + + +A   Y F+NGR ++  +    +  AY + I     P   +  ++DP+ +DVN+H
Sbjct: 245 EYAQKSAT-QYFFVNGRYMRHPYFHKAVLLAYNQMIQASESPNYFIYFDVDPQTIDVNIH 303

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-------MISSFHQDNAPKT 353
           P K+ I+F N   I + +  ++++A+ K  +  S    ++        IS  +       
Sbjct: 304 PTKTEIKFENEQAIWSILTAAVKEALGKFNVIPSIDFDQEGAVDIPTTISVENVRPPQTN 363

Query: 354 HLPKYATSLTNTQEKL----------FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
             P Y    T+  ++           F ++   S + +    +          ++ +   
Sbjct: 364 FNPNYNPFGTSNYKRPVLDWEDLYGGFEKKEEPSESVIDWEPETEIIITPSFTQQEQQKV 423

Query: 404 YQLGIACA---QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
            +     A   Q    +I++    GL+++DQH AH R++F+       ++K +SQ +L P
Sbjct: 424 IENLETRAENYQYKNRFILTGLKSGLLMIDQHRAHTRILFDLFLSQIENSKGSSQQVLFP 483

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           EI++L   +     +   DL  +G + E    +  +++ + + +   ++  LL +++D+ 
Sbjct: 484 EILELSADDALFFEQIIPDLQHVGFEFETMENHTYSVKGVSSHVGTGSVIDLLLEMLDKA 543

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
             ++   T     E I  ++A   SI+SG+++ S EM+ L+  +    N +    G+   
Sbjct: 544 KTTAQDPTA-SIHETISLSLAEASSIKSGQRLSSEEMSDLIDRLFACSNHNFTPDGKKIM 602

Query: 581 IKLKLSDIEKLF 592
                 ++EK F
Sbjct: 603 TIFSQDELEKRF 614


>gi|256828082|ref|YP_003156810.1| DNA mismatch repair protein MutL [Desulfomicrobium baculatum DSM
           4028]
 gi|256577258|gb|ACU88394.1| DNA mismatch repair protein MutL [Desulfomicrobium baculatum DSM
           4028]
          Length = 610

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 189/619 (30%), Positives = 301/619 (48%), Gaps = 42/619 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L  ++ NQIAAGE++ERPS  +KEL+EN+LDA ++R+   I  GG+S  +++DNG 
Sbjct: 6   QIRLLPPELQNQIAAGEVVERPSSVLKELVENALDAGATRIRIQIRDGGQSCIRVSDNGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV RH TSK+    D  +I++FGFRGEALPSI +VS   + S     + G 
Sbjct: 66  GIFEDQLELAVTRHATSKLQNLSDLQHINSFGFRGEALPSIASVSRFRIASARHDGDGGV 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              + G +I      AM  GT VE+ DLF  +PARL FLK    ET    +++ R+A+A 
Sbjct: 126 LEVLHG-RILRQDKTAMPKGTDVEINDLFSNVPARLKFLKKPGTETRKCAELVARIALAN 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F         ++        +  +R++ +  ++ + +   ++ K  E+++ G  G 
Sbjct: 185 PHVDFELVNADRTVHRFLA---AQDLTQRLAAIWPQEVVESLHGVDFKDGELSVHGLVGD 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +G  ++  V++N R VQDK ILS IR AY   I    YP  V+ LEI P +VDVNV
Sbjct: 242 PAMAQGRPDRILVYVNARPVQDKTILSAIREAYRGRILGKEYPQAVIFLEIPPDEVDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS---------------- 343
           HPAK+ +RF++   I   I +++ + + +    T ++   + +S                
Sbjct: 302 HPAKTEVRFQDDGAIFRIIRRAVLQTLERNVHQTHAIEHAQPLSVSQVHASLPVMEPRFP 361

Query: 344 --------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                   S       +   P+   S    Q+     ++ L+      +D       +  
Sbjct: 362 VPGEAKIESGQDALLYEQDWPQKFASSAAAQKLFESADSSLAKTGPPAADTQALRLPSAG 421

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
              S            Q  Q Y+I    D + ++DQHAAHER++F  +R     T+   +
Sbjct: 422 QNASTTHAPTAVQYLGQFAQTYLILAAKDEITLIDQHAAHERVLFNMLRA--QGTRGERR 479

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  I L   + AL  E    L  LG   E   P  + +  IPA+L+     + L+D
Sbjct: 480 PLLLPLEIPLHPAQAALAQEIWTKLDELGFSLELT-PGRLMLHSIPALLTPSKAKEFLQD 538

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           I+ E             +E++ A MAC  +I++G  +   E   L+   +     + C H
Sbjct: 539 ILTE---------KATSMEDLWAVMACKAAIKAGDTLTPNEALELVDSWQHVSEKNYCPH 589

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRP  ++  + D+EKLF R
Sbjct: 590 GRPVAVRWGVGDLEKLFKR 608


>gi|217967465|ref|YP_002352971.1| DNA mismatch repair protein MutL [Dictyoglomus turgidum DSM 6724]
 gi|226723033|sp|B8E280|MUTL_DICTD RecName: Full=DNA mismatch repair protein mutL
 gi|217336564|gb|ACK42357.1| DNA mismatch repair protein MutL [Dictyoglomus turgidum DSM 6724]
          Length = 572

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 185/598 (30%), Positives = 305/598 (51%), Gaps = 34/598 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+  L E+I N+IAAGE+IERP   +KEL+ENS+DA + R+      GG++   + D+G 
Sbjct: 3   KVILLPEEIRNKIAAGEVIERPVSVVKELVENSIDAGAKRITVEFINGGETLISVIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ R  TSKI   +D  NI T GFRGEAL SI +VS + + S+    + G 
Sbjct: 63  GMTKEDAILALNRFATSKIKTEEDLYNIKTLGFRGEALASIASVSKVEVRSKTETED-GV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G  I  +     + GT+++V DLF+ +PAR  FLKS+  ETNLI D ++R+A+AY
Sbjct: 122 FIKVEGGVIQEINLWQGSKGTVIKVFDLFYNVPARRKFLKSKTTETNLIVDFVKRIAMAY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF       N++     S NG   + +S +   +  NN + L  K     ++G+   
Sbjct: 182 PEISFQLIQDGKNKF---ITSGNGKLEDVVSLLFDIEIHNNLIFLQRKEGNYIIEGFISK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P       +Q Y ++N R V++  IL  I+  Y   +  G +P  ++ L +   +VDVNV
Sbjct: 239 PGKLISLKSQDYFYVNRRWVRNNIILQAIKEGYKNRLLEGYFPFSIVFLTLPYHEVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  I+F     +  F+ ++I++A++ +     S +     +   +++     +    
Sbjct: 299 HPTKREIKFEKEKEVYEFVSKAIKEALDSEDKRFFSGVK----ALEGKEHKNHVGIKTEK 354

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+   E     EN+LS +        +                       QI  NYII
Sbjct: 355 ELLSLPMEFEHKSENKLSEDISEYISLKS-----------------GFRIVGQIFDNYII 397

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +T D + I+DQHAAHER+ +E+++++ +   + +  +L P +I++ E E  L+ +H + 
Sbjct: 398 VETKDRVYIIDQHAAHERIRYEELKKELSLGYLQNVEILFPLVIEVSEEEKELLNKHKDL 457

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKN---IPQLLRDIIDEIIDSSTTYTLQDRIENI 536
           L +     E FGP  I I  +P    K +   I  L ++II +I +      L    + I
Sbjct: 458 LEKFAFSWEDFGPYHIRIIRVPYEFLKFDSKSIENLFQEIISDISEKD----LSKLEDKI 513

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +MAC+ +IRSG  +   EM  L+  + +      C HGRP   ++   ++E+ F R
Sbjct: 514 IKSMACHSAIRSGNILVREEMEVLINLIFERKIPLTCPHGRPYIWEISKEELERYFHR 571


>gi|329733582|gb|EGG69910.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 669

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/671 (22%), Positives = 286/671 (42%), Gaps = 84/671 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLHQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E+ E    +      ++ Q +  +     +   +  A+ +      ++   +      
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSN-DDTTVQNYENKASDDYYDVNDIKGTKSKDPKRR 477

Query: 455 QTLLTPEII-----------------------------DLLEGECALIMEHDEDLHRLGI 485
              +                                     +    +  E  + L  L  
Sbjct: 478 IPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTF 537

Query: 486 KA----------------------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                                   E FG +   +   P    K  + ++++D+I+ I++ 
Sbjct: 538 HFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEE 597

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I  
Sbjct: 598 KKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINF 656

Query: 584 KLSDIEKLFGR 594
              ++EKLF R
Sbjct: 657 SKYELEKLFKR 667


>gi|83814237|ref|YP_445831.1| DNA mismatch repair protein MutL [Salinibacter ruber DSM 13855]
 gi|83755631|gb|ABC43744.1| DNA mismatch repair protein MutL [Salinibacter ruber DSM 13855]
          Length = 647

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 176/647 (27%), Positives = 300/647 (46%), Gaps = 60/647 (9%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           S+++ NQIAAGE+++RP+   KELIEN+LDA +S +E ++   G +  Q+ D+G GM   
Sbjct: 2   SDRLANQIAAGEVVQRPASVAKELIENALDAGASSIEVLLKDAGSTLVQVIDDGCGMGPG 61

Query: 67  EIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
           +     +RH TSK+   DD   I T GFRGEAL SI AV+ +TL ++  +++ G  + + 
Sbjct: 62  DAERCFERHATSKLRSVDDLERIRTLGFRGEALASIAAVAQVTLKTKRVEDDAGTLVRVE 121

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           G +    RP A+  GT V VR+LFF +PAR NFLK+   E   +T  ++ +A+A P  + 
Sbjct: 122 GGEQVEKRPCAIPNGTSVAVRNLFFNVPARRNFLKTPATELKHLTQTVQSLALANPDTAV 181

Query: 185 TFSTIKSNRYKMNFQS---TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
                    Y +        +     RI  + G D  +  V + ++S+++ L+G+ G P+
Sbjct: 182 RLEHDGHEHYDLPAAPDSDWHAATRARILGLFGGDHEDELVAVEDESSDLRLRGFVGAPS 241

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           F+R    + ++F+NGR V D+++   ++ AY E +P G +P   L L ++P +VDVNVHP
Sbjct: 242 FHRKTRGEQFLFVNGRAVTDRYLSHAVKKAYGELVPDGAFPFFALFLAMNPERVDVNVHP 301

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK--------- 352
            K  ++F + + I  F+  ++++A+ +  +S           +      P+         
Sbjct: 302 QKEEVKFDDQSGIYGFLRSAVRRALGRVHVSPQMDDGDDEADNEEDSPGPESDGTGSGGH 361

Query: 353 ------THLPKYATSLTNTQ--------------------------EKLFLQENRLSTND 380
                 T  P+   +    Q                          E   +     S   
Sbjct: 362 AVSGDGTSSPRPTPTSFQPQRSSGDATDSSGRSSSGPSPQSPKPRPENPSVSPGDQSDAL 421

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLG-------------IACAQIHQNYIISQTTDGLV 427
               D    S   D                               +H  Y+++ T  G++
Sbjct: 422 YRRPDGGDESSPGDAPASPPHREGGSSSTSAADEAERSGRRPVWGLHDTYVVTPTETGMM 481

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           +VDQ AAH R+++E+ R      +  SQ LL P  +DL   E  L+ E  +DL  LG + 
Sbjct: 482 LVDQRAAHLRVLYERARAHLRDQQGASQRLLFPHTVDLSPAEVELLDELRDDLDALGFEL 541

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           ER     +++R +PA +   N   +L +++++   S+      +R E++  TMA   ++ 
Sbjct: 542 ERLSGRTVSVRGVPADVPDGNEDTILEELLEQYR-SAQDAVEDERREHLAKTMAQRSAVD 600

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            G+ +   E   LL ++           G PT +KL + ++   FGR
Sbjct: 601 RGQPLSEEERRALLDDLFDCEMPYADPTGTPTIVKLSMEELADRFGR 647


>gi|172087925|emb|CAQ35198.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
          Length = 669

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 153/671 (22%), Positives = 285/671 (42%), Gaps = 84/671 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                   +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTEDNQEKTFSSEESNSKPFMVENQNDEIVIREDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E+ E    +      ++ Q +  +     +   +  A+ +      ++   +      
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSN-DDTSVQNYENKASDDYYDVNDIKGTKSKDPKRR 477

Query: 455 QTLLTPEII-----------------------------DLLEGECALIMEHDEDLHRLGI 485
              +                                     +    +  E  + L  L  
Sbjct: 478 IPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTF 537

Query: 486 KA----------------------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                                   E FG +   +   P    K  + ++++D+I+ I++ 
Sbjct: 538 HFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEE 597

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I  
Sbjct: 598 KKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINF 656

Query: 584 KLSDIEKLFGR 594
              ++EKLF R
Sbjct: 657 SKYELEKLFKR 667


>gi|86131714|ref|ZP_01050311.1| DNA mismatch repair protein MutL [Dokdonia donghaensis MED134]
 gi|85817536|gb|EAQ38710.1| DNA mismatch repair protein MutL [Dokdonia donghaensis MED134]
          Length = 626

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 166/627 (26%), Positives = 301/627 (48%), Gaps = 41/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +S ++ ++   GK+  QI D+G G
Sbjct: 5   IKLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGASSIKLIVKDAGKTLIQIIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI  +DD  N++T GFRGEAL SI AV+H+ L +RP     G  
Sbjct: 65  MSDTDARMSFERHATSKITTADDLFNLNTKGFRGEALASIAAVAHVALKTRPEGAEVGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI +    A   GT + V++LFF IPAR NFLKS  VE   + D  +R+A+A+P
Sbjct: 125 IEIEGSKIITQEVCATPKGTSLAVKNLFFNIPARRNFLKSNSVELRHVIDEFQRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F     +   +++      GN  +RI  + G       V + E+++ +T+ G+   P
Sbjct: 185 DIAFAMYHNEGELFQLP----KGNLKQRIVAIFGGKTNEKLVPVQEETDILTINGFVVKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F++    + + F+N R ++  ++   +  A+   +P        L L++DP  +D+N+H
Sbjct: 241 EFSKKTRGEQFFFVNDRFIKSAYLNHAVTAAFDGLLPDRARASYFLYLKVDPATIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK--------------------- 339
           P K+ I+F +   +   +  +I+ ++ +  I+     ++                     
Sbjct: 301 PTKTEIKFDDEHALYAMLRSTIKHSLGQFSIAPVLDFNRDSELDTPYDYKNKGVVTPKIE 360

Query: 340 --KMISSFHQDNAPK--THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
             +  + F    APK     P Y        EK++      +T     + +   S  N  
Sbjct: 361 VDRTFNPFESVPAPKRGAQRPDYEKPDVTGWEKMYEGMESQATAGSTVTFEKEVSTGNMF 420

Query: 396 VEESEATHYQLGIAC---------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                        A           Q+++ YI+S    G+VI+DQH AH+R+++E+  ++
Sbjct: 421 ESGLNTKAAAPIAATAVSQDESSTYQLNKKYIVSTIKSGMVIIDQHKAHQRVLYEEFLRN 480

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
               +  SQ LL P  +     E ALI E  E L   G        + + I  IP  +++
Sbjct: 481 ITVKESVSQQLLFPLTLTYSTTELALIEELKEGLENTGFIFGLISGDILEINGIPTSITE 540

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
             +P ++  ++ ++ ++    +   + + +  +MA   +++ G  + S+    L+  +  
Sbjct: 541 SQVPVVIDQLLSDL-ENEVPDSGFSQTDTLAKSMAKSLAVKGGETLDSLSREHLVNSLFA 599

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFG 593
               S     + TFI +   D+++ F 
Sbjct: 600 CKEPSISPTNKKTFITITGDDLDRKFK 626


>gi|21282908|ref|NP_645996.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486135|ref|YP_043356.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208057|ref|ZP_06924488.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912139|ref|ZP_07129582.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|25090739|sp|Q8NWX9|MUTL_STAAW RecName: Full=DNA mismatch repair protein mutL
 gi|56749198|sp|Q6G9R7|MUTL_STAAS RecName: Full=DNA mismatch repair protein mutL
 gi|21204347|dbj|BAB95044.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244578|emb|CAG43007.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|172087917|emb|CAQ35194.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus]
 gi|296887300|gb|EFH26202.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886385|gb|EFK81587.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 669

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 150/671 (22%), Positives = 281/671 (41%), Gaps = 84/671 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +R      +   I+  IQ+A   + +   + L      +        +    + 
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSD------------------------DPTYSEDND 394
             +  N QEK F  E   S   ++ +                         D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMVENQNDEIVIREDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E+ E    +      ++ Q +  +     +   +  A+ +      ++   +      
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSN-DDTSVQNYENKASDDYYDVNDIKGTKSKDPKRR 477

Query: 455 QTLLTPEII-----------------------------DLLEGECALIMEHDEDLHRLGI 485
              +                                     +    +  E  + L  L  
Sbjct: 478 IPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTF 537

Query: 486 KAE----------------------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                                     FG +   +   P    K  + ++++D+I+ I++ 
Sbjct: 538 HFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEE 597

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I  
Sbjct: 598 KKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINF 656

Query: 584 KLSDIEKLFGR 594
              ++EKLF R
Sbjct: 657 SKYELEKLFKR 667


>gi|89891567|ref|ZP_01203071.1| DNA mismatch repair protein mutL [Flavobacteria bacterium BBFL7]
 gi|89516114|gb|EAS18777.1| DNA  mismatch repair protein mutL [Flavobacteria bacterium BBFL7]
          Length = 608

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/608 (27%), Positives = 304/608 (50%), Gaps = 23/608 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+++RP+  +KEL+EN++DA ++++  +I   GK+  Q+ D+G G
Sbjct: 5   IRLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGATQISLIIKDAGKTLVQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI  ++D  ++HT GFRGEAL S+ A++H++L ++  +++ G  
Sbjct: 65  MSMTDARMAFERHATSKITNANDLFDLHTKGFRGEALASVAAIAHVSLKTKREEDDLGTF 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G K+ +  PV    GT++ VR+LF+ +PAR  FLKS+ VE   ITD   R+A+A+P
Sbjct: 125 LEIEGSKVVNQEPVVTTKGTMISVRNLFYNVPARRKFLKSDNVELRNITDEFHRVAMAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V   FS+  +  + +       N+ +RI  ++G       V + E++  + + G+ G P
Sbjct: 185 QVGLKFSSNDTELFNLPI----SNYRQRIVNIMGAKTNEKLVPVEEETELVKISGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F R      Y F+N R ++  ++   + +A+   +     P   L L++    VD+N+H
Sbjct: 241 EFARKTKGLQYFFVNDRFIKHNYLHHAVTSAFEGLLKEKNNPTYFLFLDVPKDSVDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ ++F +   +   +  S++ A+ +  I+      +      ++     T  PK   
Sbjct: 301 PTKTEVKFDDEHSLYAIVRASVKHALGQFSINAIDFDKEPQYEVPYEYTKKNTSSPKIEV 360

Query: 361 -----------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-----SEATHY 404
                      S +  +      +      + L +     S   D  EE     S     
Sbjct: 361 NPDFNPFSNTGSFSTNKSTPSYSKPAPQAWESLYAGLDEASTLVDETEEVSMTTSMFEDE 420

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
           ++     Q+ + +IIS    G++++ Q+ AHER+++E++ +     + TSQ LL P  ++
Sbjct: 421 KVTRNIFQLQRKFIISTLKSGMLVIHQNRAHERVLYEQLLKHITVQRGTSQQLLFPLRLN 480

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E +++ +  + L + G   +    N + I  +P  L +K++P++L  II +  +  
Sbjct: 481 LPVDEVSILTQLQDQLEQTGFIFKTLANNVVEIVGLPIQLKEKHVPEVLETIIRD-SELD 539

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
                  + + + ATMA   +IRSG  M    M  L+ E+     S     G+  FI + 
Sbjct: 540 LPKESFSQSDRLAATMARGMAIRSGESMSQEAMENLVDELFACKESELTAQGKKVFINIT 599

Query: 585 LSDIEKLF 592
              +   F
Sbjct: 600 GESLNLKF 607


>gi|253731915|ref|ZP_04866080.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724325|gb|EES93054.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 669

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/671 (22%), Positives = 281/671 (41%), Gaps = 84/671 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +R      +   I+  IQ+A   + +   + L      +        +    + 
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSD------------------------DPTYSEDND 394
             +  N QEK F  E   S   ++ +                         D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMVENQNDEIVIREDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E+ E    +      ++ Q +  +     +   +  A+ +      ++   +      
Sbjct: 419 TREKDEDYFKKQQEILQEMDQTFDSN-DDTSVQNYENKASDDYYDVNDIKGTKSKDPKRR 477

Query: 455 QTLLTPEII-----------------------------DLLEGECALIMEHDEDLHRLGI 485
              +                                     +    +  E  + L  L  
Sbjct: 478 IPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTF 537

Query: 486 KAE----------------------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                                     FG +   +   P    K  I ++++D+I+ I++ 
Sbjct: 538 HFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEIEEIIKDMIELILEE 597

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I  
Sbjct: 598 KKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINF 656

Query: 584 KLSDIEKLFGR 594
              ++EKLF R
Sbjct: 657 SKYELEKLFKR 667


>gi|300087585|ref|YP_003758107.1| DNA mismatch repair protein MutL [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527318|gb|ADJ25786.1| DNA mismatch repair protein MutL [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 562

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/596 (29%), Positives = 299/596 (50%), Gaps = 37/596 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L    + +IAAGE++ERP+  +KEL+EN++DA +  ++  I  GG +  +++D+G
Sbjct: 1   MPIQQLDRNTVARIAAGEVVERPASVVKELVENAIDAAAGAIDIEIRDGGTALIRVSDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ + ++P+A++RH TSKI+  DD  ++ + GFRGEAL SI AV+ L +++      +G
Sbjct: 61  IGIAAVDLPLALERHATSKITSFDDLDSLSSLGFRGEALSSIAAVAELEVLTATAD-ESG 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +     +++         GT V V  LF  +PARL FLK+   ET  +T V+   A+A
Sbjct: 120 SSLVSRHGEVTVKTAARAR-GTTVSVSRLFSAVPARLKFLKTTATETGHVTAVVGHYALA 178

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P + FT S       ++     +G   +  ++V+G +     ++++   + + L G   
Sbjct: 179 RPDIRFTLSVDGH---RVLASPGSGRLRDAAAEVLGRETAARMMDIDSAIDSMALHGLVA 235

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R N +  Y F+N R V+   +   +  A    + +GRYP+ VL L + P + D+N
Sbjct: 236 PPEIARANRSGQYFFVNRRWVKSPMLTRALAEAGHGLLTVGRYPIAVLSLTLPPAETDIN 295

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           +HPAK+ I+FR  + + +FI +S++  +   G S   V+ +                  Y
Sbjct: 296 IHPAKTEIKFRQDSRVFDFIRRSVRSLL--VGESPVPVIHE--------------SPSSY 339

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             SL       F++         L       +        + A          QI   Y+
Sbjct: 340 RPSLDRRASANFIEN--------LFPPTAPGTSSLPEPGLTVARALPALRPVGQIADCYL 391

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++  DGL I+DQHAAHER+++EK      S    SQ+LL+P  I L   E   +    +
Sbjct: 392 LAEGPDGLYIIDQHAAHERVMYEKALAARASRVPASQSLLSPRDIGLSPAETTALTGTSD 451

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L   G   E FG   + +R +PAIL+  +    L + +    +S  + T  ++   +  
Sbjct: 452 LLKEFGFIVEDFGGRTVLVRAVPAILADGDWETALHEFL----NSPESRTRGEQ--KMAE 505

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC+ ++R+GR +   E+  LL ++E+    + C HGRPT +KL+ S +E+ F R
Sbjct: 506 LIACHSAVRAGRTLSPEEIRALLADLERTDLPATCPHGRPTLMKLETSALERHFKR 561


>gi|255690560|ref|ZP_05414235.1| DNA mismatch repair protein MutL [Bacteroides finegoldii DSM 17565]
 gi|260624021|gb|EEX46892.1| DNA mismatch repair protein MutL [Bacteroides finegoldii DSM 17565]
          Length = 633

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 162/634 (25%), Positives = 290/634 (45%), Gaps = 48/634 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  +KEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVVKELVENAIDAEAQNIHVLVTDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G  + S   V+ + G+   +++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSTVESQEAVSCSKGSNFSIKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPVSP----LRQRIMAIFGKKLNQQLLNIEVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F Q  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEQSTSSEPPKVH 360

Query: 358 YATSLTN------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           Y +                        E L+    + S  +    +  T  E+    E+ 
Sbjct: 361 YNSDYNPFKVSAGGSGGGSYSRSKVEWEDLYGGLTKASKMNNPMPEPETDWENPFSGEQQ 420

Query: 400 EATHYQLGIACA--------------------QIHQNYIISQTTDGLVIVDQHAAHERLI 439
                + G                        Q    +I++    GL+++DQH AH R++
Sbjct: 421 SFVTEKEGETLTSIASTLYGDEPVVEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++  +     +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMEQIRQKQGVSQGVLFPEILQLPASEAAVLQGIMDDLAAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           IP+ +   N  +L+R+++   ++       ++    +  T+A   +I  G+ + + EM  
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGN-DVKEEIQNILALTLARAAAIVYGQVLSNEEMVS 599

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 600 LVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|254557088|ref|YP_003063505.1| DNA mismatch repair protein [Lactobacillus plantarum JDM1]
 gi|254046015|gb|ACT62808.1| DNA mismatch repair protein [Lactobacillus plantarum JDM1]
          Length = 678

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/673 (26%), Positives = 292/673 (43%), Gaps = 86/673 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + +QIAAGE++ERP+  +KEL+EN++DA +++V+ ++   G    ++ D+G 
Sbjct: 3   KIHELSSVLADQIAAGEVVERPASVVKELVENAVDAHATQVDILVQESGVQSIRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+  A +RH TSKI   +D   +H+ GFRGEALPSI +V+ + + +      TG 
Sbjct: 63  GIDDAEVLTAFKRHATSKITSREDLFRVHSLGFRGEALPSIASVADVVMNTST--GATGT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I   G K+    P  +  GT + V DLFF  PARL +LKS Q E   I DV+ R+A++Y
Sbjct: 121 SIHYRGGKLLQQSPAPLRQGTDITVTDLFFNTPARLKYLKSPQTELANILDVVNRIALSY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F          ++   +  G+  + I+ + G       V +   + +  L G+  +
Sbjct: 181 PAVAFRLVHNAK---ELLKTAGRGDLQQVIAGIYGVQNARKMVAIQGSTTDFKLSGFVAL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     V INGR ++++ +   +   Y   + +GRYP+ V+ L +DP  VDVNV
Sbjct: 238 PELTRASRQYITVLINGRAIKNQQLTKAVIKGYGSKLMVGRYPIAVIALTMDPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP K  +R      +   +  +I   +    +  S++ +                     
Sbjct: 298 HPTKQEVRLSKEPELAKLVSTTITDRLVDVNLIPSALTNLGSHRREHLNTDQLAMDLNAV 357

Query: 339 -----------KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                            F    A  T  P  AT++ +T        NR + + ++PS+  
Sbjct: 358 SSQYQVADKTTPASTEQFAASLAAATMQPSSATTMVSTTSAQPSAVNRAAVSAVVPSESA 417

Query: 388 TYSEDNDPV----------------------------------------------EESEA 401
             S +   +                                              E  + 
Sbjct: 418 ASSANQPIMISHRDELTATPVQAFDQRYQSESGALPFGETAEPLETSTAASVPTSEAPDT 477

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
             +       Q+H  Y++++  DG+ I+DQHAA ER+ +E  RQ         Q LL P 
Sbjct: 478 ERFPQLRYLGQMHGTYLLAEADDGMYILDQHAAQERINYEYYRQAIGEVSADQQNLLVPI 537

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I+D    +   I E    L  LGI  E FG N+  +   P           +R++ID ++
Sbjct: 538 ILDYPTSDVLKIKEKLPLLAELGIHLESFGGNSFIVHAHPTWFKAGQEEDTIREMIDWLL 597

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
                 T+    E     M+C  +I++   +   +   LL ++    N   C HGRP  +
Sbjct: 598 QDDK-LTVAQFREKSAIMMSCKRAIKANHHLDDQQARALLAKLPTCENPFNCPHGRPVTV 656

Query: 582 KLKLSDIEKLFGR 594
               SD+E++F R
Sbjct: 657 HFTNSDMERMFKR 669


>gi|28378883|ref|NP_785775.1| DNA mismatch repair protein [Lactobacillus plantarum WCFS1]
 gi|308181083|ref|YP_003925211.1| DNA mismatch repair protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|38258030|sp|Q88UZ8|MUTL_LACPL RecName: Full=DNA mismatch repair protein mutL
 gi|28271720|emb|CAD64626.1| DNA mismatch repair protein HexB [Lactobacillus plantarum WCFS1]
 gi|308046574|gb|ADN99117.1| DNA mismatch repair protein [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 678

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 177/673 (26%), Positives = 292/673 (43%), Gaps = 86/673 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + +QIAAGE++ERP+  +KEL+EN++DA +++V+ ++   G    ++ D+G 
Sbjct: 3   KIHELSSVLADQIAAGEVVERPASVVKELVENAVDAHATQVDILVQESGVQSIRVIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+  A +RH TSKI   +D   +H+ GFRGEALPSI +V+ + + +      TG 
Sbjct: 63  GIDDAEVLTAFKRHATSKITSREDLFRVHSLGFRGEALPSIASVADVVMNTST--GATGT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I   G K+    P  +  GT + V DLFF  PARL +LKS Q E   I DV+ R+A++Y
Sbjct: 121 SIHYRGGKLLQQSPAPLRQGTDITVTDLFFNTPARLKYLKSPQTELANILDVVNRIALSY 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F          ++   +  G+  + I+ + G       V +   + +  L G+  +
Sbjct: 181 PAVAFRLVHNAK---ELLKTAGRGDLQQVIAGIYGVQNARKMVAIQGSTTDFKLSGFVAL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     V INGR ++++ +   +   Y   + +GRYP+ V+ L +DP  VDVNV
Sbjct: 238 PELTRASRQYITVLINGRAIKNQQLTKAVIKGYGSKLMVGRYPIAVIALTMDPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP K  +R      +   +  +I   +    +  S++ +                     
Sbjct: 298 HPTKQEVRLSKEPELAKLVSTTITDRLVDVNLIPSALTNLGSHRREHLNTDQLAMDLNAV 357

Query: 339 -----------KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                            F    A  T  P  AT++ +T        NR + + ++PS+  
Sbjct: 358 SSQYQVADKTTPASTEQFAASLAAATMQPSSATTMVSTTSAQPSAVNRAAVSAVVPSESA 417

Query: 388 TYSEDNDPV----------------------------------------------EESEA 401
             S +   +                                              E  + 
Sbjct: 418 ASSANQPIMISHRDELTATPVQAFDQRYQSESGALPFGETAEPLETSTAASAPTSEAPDT 477

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
             +       Q+H  Y++++  DG+ I+DQHAA ER+ +E  RQ         Q LL P 
Sbjct: 478 ERFPQLRYLGQMHGTYLLAEADDGMYILDQHAAQERINYEYYRQAIGEVSADQQNLLVPI 537

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I+D    +   I E    L  LGI  E FG N+  +   P           +R++ID ++
Sbjct: 538 ILDYPTSDVLKIKEKLPLLAELGIHLESFGGNSFIVHAHPTWFKAGQEEDTIREMIDWLL 597

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
                 T+    E     M+C  +I++   +   +   LL ++    N   C HGRP  +
Sbjct: 598 QDDK-LTVAQFREKSAIMMSCKRAIKANHHLDDQQARALLAKLPTCENPFNCPHGRPVTV 656

Query: 582 KLKLSDIEKLFGR 594
               SD+E++F R
Sbjct: 657 HFTNSDMERMFKR 669


>gi|91214646|ref|ZP_01251619.1| putative DNA mismatch repair protein [Psychroflexus torquis ATCC
           700755]
 gi|91187073|gb|EAS73443.1| putative DNA mismatch repair protein [Psychroflexus torquis ATCC
           700755]
          Length = 615

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 169/618 (27%), Positives = 295/618 (47%), Gaps = 34/618 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA ++ V  +I  GGK+  Q+ DNG G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASVVKELMENAVDANATLVSLIIKEGGKTLIQVVDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT  +  ++ +RH TSKI  ++D  ++HT GFRGEAL SI AVSH+ + ++      G  
Sbjct: 65  MTDTDARLSFERHATSKIKAAEDLFHLHTKGFRGEALASIAAVSHVDMKTKTEVEEVGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G  I+   P     GT + V++LFF IPAR NFLKS  VE   + D  +R+A+ +P
Sbjct: 125 LMVEGSHITQQEPCVTPIGTSISVKNLFFNIPARRNFLKSASVEHKHVIDEFQRVALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F F    S  + +       NF  RI  V+G       V + E+++ I L G+ G P
Sbjct: 185 SVAFKFIHNDSELFNLPV----ANFRHRIVGVMGSKMNEKLVPVKEETDLIQLYGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +  + + F+N R ++  ++   + +A+   +    YP   L L+++P  +D+N+H
Sbjct: 241 EFAKKSRGEQFFFVNDRFIKHPYLHHAVSSAFEGLLKDKAYPTYFLYLQVNPESIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------------------SSVL 337
           P K+ ++F N   I + +  S++ ++ +  +S                         SV+
Sbjct: 301 PTKTEVKFDNEHAIYSILRSSVKHSLGQFNVSPVLDFNKDASMETGYDQHKLGAKIPSVV 360

Query: 338 SKKMISSFHQDNAPKT--HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
             +  + F  +    +   LP    +  N   +          +DLL  +  +       
Sbjct: 361 VDRNFNPFEAEYKFSSTFKLPSSKRNTPNPSWEALYTNLEGQDDDLLNIEVDSEQVSGSL 420

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
            +     H   G    Q  + YII+ T   ++I+DQH AH R+++E++ ++  +    SQ
Sbjct: 421 FQGEHTQHKSSGT--FQFQRKYIITSTKSEMLIIDQHRAHFRILYEELLRNITAKPALSQ 478

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  + L   E ++     E L   G      G + + I  IP  L +     LL  
Sbjct: 479 QLLFPLKLQLDTNEISVFKTLKESLTNAGFSISEIGEDFVKINGIPNRLPESETSILLDQ 538

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ +  +S    +  D+ + +  ++A   +I++G  +   E   L+  +           
Sbjct: 539 LLSDF-ESDIPDSGFDQTDRLAKSLAQSMAIKNGAVLHKEEQTELVNLLFSCKEPMLTPL 597

Query: 576 GRPTFIKLKLSDIEKLFG 593
            R  F+K   SD +K F 
Sbjct: 598 NRLVFVKQSASDFDKKFM 615


>gi|108802890|ref|YP_642827.1| DNA mismatch repair protein MutL [Rubrobacter xylanophilus DSM
           9941]
 gi|108764133|gb|ABG03015.1| DNA mismatch repair protein MutL [Rubrobacter xylanophilus DSM
           9941]
          Length = 590

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 175/598 (29%), Positives = 297/598 (49%), Gaps = 13/598 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L   +  Q+AAGE+++RP+  +KEL+EN+LDA +SR+E  +A GG +   + D+G
Sbjct: 1   MGIKILDPTVAQQVAAGEVVDRPASVVKELVENALDAGASRIEVELAEGGTARILVRDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  E+  + V RH TSKI   +D  ++ T GFRGEALPSI +VS   L++       G
Sbjct: 61  SGMDPEDARLCVLRHATSKIRSVEDLESVSTLGFRGEALPSIASVSAFRLITST-GEGPG 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ + G   + + P     GT V V  LF+ +PAR  FLK  + E   + + +  +A+A
Sbjct: 120 TRVVVEGGSEARLSPATHPKGTTVLVDRLFYNVPARRAFLKGPRAERAAVVETLTHIAVA 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+VSF  S        +   +   +  ER++Q+ G         +  +S    ++GY  
Sbjct: 180 HPEVSFRVSEGSREYLSLPAAA---DLLERLAQLHGVARARAMRRVEYESGAFRVEGYAA 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P+    +     V +NGR V+   +   +  AY  T+P GRYP V L + +DPR+VDVN
Sbjct: 237 LPSLTESSRAHQTVAVNGRWVRGDNLHRGLDDAYRATVPAGRYPPVALRISVDPRRVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKTHLPK 357
           VHP K  +RF +    R  +  +++ AI  +  +  +   +     F Q+   P   + +
Sbjct: 297 VHPTKQLVRFSDERAAREAVAAAVRSAIEWRPPAPPAAPPRAPARGFAQERLGPPPRVAE 356

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              +   +            +       +P  +   +P         +      Q+   Y
Sbjct: 357 SRPAYRGSPPPDLRAVREEISRASRALPEPPPAAPEEPPGRGTLPDLRELRVIGQLGAGY 416

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+ +  + L IVDQH AHER I +++R   +   + S  LL PE+++L   E  +  E  
Sbjct: 417 ILLEDPEALWIVDQHVAHERAILDRLRDAGSPAPVQS--LLVPEVVELSPAEAEVAAESL 474

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSK-KNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
           E+L   G +AE FGP ++ +    A L++  ++   L+D +  I  +   +  +DR   I
Sbjct: 475 EELAVYGFEAEPFGPRSLRVTAALASLAERGDVAGALKDALAAISGTEPGHRREDR---I 531

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LAT+AC+ +++ G ++   EM  L+R+   +   + C HGR    ++ LS+I +   R
Sbjct: 532 LATIACHSAVKMGDRLSLQEMESLVRDWLGSRLPATCPHGRSICYRMSLSEIGRKMDR 589


>gi|253583594|ref|ZP_04860792.1| DNA mismatch repair protein mutL [Fusobacterium varium ATCC 27725]
 gi|251834166|gb|EES62729.1| DNA mismatch repair protein mutL [Fusobacterium varium ATCC 27725]
          Length = 642

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/654 (29%), Positives = 319/654 (48%), Gaps = 80/654 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E + N IAAGE++E P+  +KEL+ENSLDAES  ++  +  GG+    I+D+G G
Sbjct: 6   IKVLDESVSNIIAAGEVVENPASMLKELLENSLDAESKSIKIEVRSGGRHVI-ISDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT +++ ++V+RH TSKI+  +D  N+ T+GFRGEAL SI AVS +TL SR   + TG+ 
Sbjct: 65  MTQDDLLLSVERHATSKIAKKEDLYNLFTYGFRGEALSSISAVSKMTLSSRTKDDETGSA 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +SG KI+ ++ +  N GT +E++DLFF  PARL FL+    E   I D+I + A+  P
Sbjct: 125 ITVSGGKITGLKEIQRNVGTTIEIKDLFFNTPARLKFLRKTTTEYMNIKDIIVQEALGNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
             + T          ++ ++T       I ++ G + + N+   +         GY G  
Sbjct: 185 NTAITLILDDK----VSIKTTGNGIDNTIVEIFGRNVLKNSKPFSM--------GYLGNA 232

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  R   +  + F+NGR V+ K + + I   Y   +  G+YP  +L LEIDP++VDVNVH
Sbjct: 233 SLYRATRDSIFTFVNGRMVKSKLLENAIIDGYYTKLMKGKYPFAILFLEIDPKEVDVNVH 292

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-------------------- 340
           P+K  ++F N + I   +++ I+       I  S  + K                     
Sbjct: 293 PSKKIVKFSNESNIYGRVLKEIKNCFEGDDIFVSPTMEKTFEKENEALIDFSEFSKFVPM 352

Query: 341 -----MISSFHQDNAPKTHLPKYAT----------SLTNTQEKLFLQENRLSTNDLLPSD 385
                       +  PKT      +          S  +  EK+F+++ R +  ++    
Sbjct: 353 KAENIKFEGIEVEKYPKTEREAEVSDRDIKKETTESNEDNFEKIFIEKGRTTPFEIKEEI 412

Query: 386 DPTYSEDNDPV-------------------------EESEATHYQLGIACAQIHQNYIIS 420
                 +   +                         EE  A          QI  ++I+ 
Sbjct: 413 KVFEGNEKSDIIKTDVVSEVKSEFKDEIKEDRIIVSEEKNAASKIDFKVFGQIFDSFILV 472

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +      I DQH  HER+++EK+++++  T ++ Q LL P  I L   E  LI E+ E  
Sbjct: 473 ERDGVFEIYDQHIVHERILYEKLKKEYYGTNVSRQQLLVPIRITLDPRERELIFENIEYF 532

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G + + F  N + IR +P +  + +   + ++II  + ++  T    D  E+I+ +M
Sbjct: 533 TGFGFEIDEFDENEVVIRSVPVMNFRDSTENIFKNIIKNLKENKET----DIRESIIISM 588

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C G+I++  K+   EM  ++R++ +      C HGRP  +K+ L+D+EKLF R
Sbjct: 589 SCKGAIKANEKLSLNEMETIIRKLHEIGE-YTCPHGRPIIVKITLNDLEKLFKR 641


>gi|303236772|ref|ZP_07323351.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           disiens FB035-09AN]
 gi|302482940|gb|EFL45956.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           disiens FB035-09AN]
          Length = 618

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 156/618 (25%), Positives = 284/618 (45%), Gaps = 35/618 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  +KEL+EN++DA ++ +  +I   G++  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVVKELVENAIDAGATTINVIIVDAGRTSIQVVDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  +DD   + T GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARISFERHATSKIKKADDLFALTTMGFRGEALASIAAVAQIELKTRQETEEIGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG K     P +   G+  +V +LFF +PAR  FLKS+  E N I     R+ + YP
Sbjct: 125 LNISGSKFVGQEPCSCAVGSSFKVDNLFFNVPARRKFLKSDTTELNNIISSFERIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SFT  +     + +          +RI +V G+    + + +   +    + G+ G P
Sbjct: 185 NISFTLHSNGVEIFSLRACG----LRQRIVEVFGKKLNQDLLPVEVSTTLCHIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      Y F+N R ++  +    I TA+   +P G      +  ++    +DVN+H
Sbjct: 241 ESAKKKGALQYFFVNDRYMKHPYFNKAIVTAFERLLPFGEQVPYFIYFQVPAENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   ++ ++++A+ K     S       K  I  F+           
Sbjct: 301 PTKTEIKFENEQAIWQILMAAVKEALGKFNDIPSIDFDTEGKPDIPVFNPSANTNAPKVN 360

Query: 358 YATSLTNTQEKLFLQE----------------NRLSTNDLLPSDDPTYSEDNDPVEESEA 401
           Y  +    +E    +                 + +  N    +D+    +      ES  
Sbjct: 361 YNPNYNPFKETQVGRNTIPADDWQTLYQNLGDDEMMPNATPRTDNNNGEQHIFTPSESGK 420

Query: 402 THYQLGIA-------CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
           +  + G           Q    YI++    GL+I+DQH AH R+++E   +   +    +
Sbjct: 421 SDLRSGNVAEERSPAHYQYKGCYIMTAVKSGLMIIDQHRAHVRILYELYLKQLKNHTAHT 480

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL PE+I       +L+ +   ++  +G      G N+ A+  IP  +   +I  L+ 
Sbjct: 481 QKLLFPEMITFPTHNVSLLEKVISEMKLMGFDLSNMGRNSYAVNGIPTGIEGLDISNLVG 540

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++++  ++   T   ++  +++  ++A   +I  G+ + + EM  ++ ++    N +   
Sbjct: 541 EMVNSALEEGVTVD-EEIKKSLALSLAKNAAIPHGQVLNNDEMENIVNQLFACSNVNYTP 599

Query: 575 HGRPTFIK-LKLSDIEKL 591
             R   +  L+  DIEK+
Sbjct: 600 -NRKVILTILRQVDIEKM 616


>gi|182415852|ref|YP_001820918.1| DNA mismatch repair protein MutL [Opitutus terrae PB90-1]
 gi|238692919|sp|B1ZZY2|MUTL_OPITP RecName: Full=DNA mismatch repair protein mutL
 gi|177843066|gb|ACB77318.1| DNA mismatch repair protein MutL [Opitutus terrae PB90-1]
          Length = 628

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/627 (30%), Positives = 308/627 (49%), Gaps = 39/627 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+R LS+++ NQIAAGE+IERP+  +KEL+EN+LDA ++R+E     GG+S  ++ DNG 
Sbjct: 3   KVRILSDRVANQIAAGEVIERPAAVVKELVENALDAGATRIEVEFRHGGRSLMRVEDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ ++  +A++RH TSKIS+  D   + ++GFRGEALPSI +VS   L +R    N G 
Sbjct: 63  GMSRDDALLALERHATSKISEAADLDRLGSYGFRGEALPSIASVSRFELQTREAGQNVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +SG K+  VR      GT +EV  LF ++PAR  FLKS+Q E   I   +R  A+A 
Sbjct: 123 EVLVSGGKLVHVRDCGRPVGTRIEVAQLFNSVPARRKFLKSDQTEAAHIVQCVRLYALAC 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P  +F+        ++     T     ERI+++ G     + V +    + + L G  G 
Sbjct: 183 PGTAFSLIEDGRVIFRSPECPT---LAERIAEIFGRQTAESLVPIESVESGMRLGGLIGR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   RG  ++  VF+N R V  + +   +  +Y E++P GRYP+  +  E DP  VDVNV
Sbjct: 240 PGVGRGTRHEMIVFVNQRPVDSRTLNYALIESYYESVPKGRYPLAFVFFECDPAAVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKG------ISTSSVLSKKMISSF------HQ 347
           HPAK  +RFRN   +R+F+I+S+ + + +           S+    K  S         +
Sbjct: 300 HPAKREVRFRNEPAVRSFVIRSVLQRLREIADHRSDFAQPSADNMPKPESPGAPAAHGRK 359

Query: 348 DNAPKTHLPKYA-----------TSLTNTQEKLFLQENRL-----------STNDLLPSD 385
           D+AP  H    A           T+    +   +L+++                  +P+ 
Sbjct: 360 DDAPAAHAEGRAATPLAAGNLIVTARFGAESTPYLEKSGAIAGARPAGVLPPAVPRIPAA 419

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
               +     V                 H NY + +TT GL+++D+ AAHER+ FE++++
Sbjct: 420 PMPVNAGAAAVPAPLKPASPSWRFVGLAHGNYALFETTAGLILLDRRAAHERVWFERLQE 479

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
            F S  + SQ LL P  ++L     AL+++  + L+  G +   FG N   I  +PA + 
Sbjct: 480 QFRSGAVPSQRLLLPVPVELDPIAAALLLDRVQFLNAHGFEIAEFGRNFFRIEAVPAWME 539

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             +    LRD++    +        +     LA +A   ++R        E+  L+  + 
Sbjct: 540 PADAEPFLRDLLGAFREGHWPDRDANLAREELARLASVKAVRLPAVTGEQELRALVTHLF 599

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLF 592
                     GRPT+I+L  +++ + F
Sbjct: 600 ATRTPMTNPAGRPTYIELNHAELARRF 626


>gi|150003015|ref|YP_001297759.1| DNA mismatch repair protein mutL [Bacteroides vulgatus ATCC 8482]
 gi|254883663|ref|ZP_05256373.1| DNA mismatch repair protein mutL [Bacteroides sp. 4_3_47FAA]
 gi|294775650|ref|ZP_06741158.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           vulgatus PC510]
 gi|319642199|ref|ZP_07996859.1| DNA mismatch repair protein mutL [Bacteroides sp. 3_1_40A]
 gi|167017337|sp|A6KXH3|MUTL_BACV8 RecName: Full=DNA mismatch repair protein mutL
 gi|149931439|gb|ABR38137.1| DNA mismatch repair protein mutL [Bacteroides vulgatus ATCC 8482]
 gi|254836456|gb|EET16765.1| DNA mismatch repair protein mutL [Bacteroides sp. 4_3_47FAA]
 gi|294450494|gb|EFG18986.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           vulgatus PC510]
 gi|317386185|gb|EFV67104.1| DNA mismatch repair protein mutL [Bacteroides sp. 3_1_40A]
          Length = 622

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/634 (26%), Positives = 285/634 (44%), Gaps = 59/634 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  IKEL+EN++DA +  V+ ++   GK+  Q+ D+G G
Sbjct: 5   IRLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGAQHVDVLVVDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   +HT GFRGEAL SI AV+ + L +R      G  
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALHTMGFRGEALASIAAVAQVELRTRMEGEELGTM 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ISG K+     V+   G+   V++LFF +PAR  FLKS Q E + I     R+ +  P
Sbjct: 125 LTISGSKVEGQEAVSCPKGSSFSVKNLFFNVPARRKFLKSNQTELSNILTEFERIVLVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSFT     +  + +          +RI  V G+      + L+  +  + + G+ G P
Sbjct: 185 EVSFTLHHNGAELFNLPAL----QLRQRIMGVFGKKINQELLSLDVDTTMVRVSGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + Y F+NGR ++  +    I  AY + +P+G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGARQYFFVNGRYMRHPYFHKAIMDAYEQLVPVGEQVSYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------KKMI 342
           P K+ I+F N   I   +  ++++ + K     S                      +   
Sbjct: 301 PTKTEIKFENEQAIWQILAAAVKETLGKFNAVPSIDFDTEGMPDIPAFDASPYTGIQPPK 360

Query: 343 SSFHQDNAP---KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           ++++ D  P       P   +  +   E+L+    R +++     D+  Y  +     E 
Sbjct: 361 TTYNPDYNPFNVSAAPPSSYSKPSKDWEQLYAGLERHASSQNFHPDENDYRAEEASPAEE 420

Query: 400 EATHYQL---------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
               Y                Q    +I++    GL+I+DQ  AH R++++K     +  
Sbjct: 421 NPGLYDHVEDSSVSEKSGQHYQFKGRFILTSVKSGLMIIDQQRAHIRILYDKYIDQISRR 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           +  SQ +L P+I+     E A++ E  EDL  LG +    G  + AI  +PA +   N  
Sbjct: 481 QGVSQGMLFPDIVQFPLSEVAILQEIMEDLSFLGFELTDLGGGSYAINGVPAGIEGLNPI 540

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS-----------GRKMQSIEMNR 559
            L+++++   ++       + +            SI +           G+ + + EM  
Sbjct: 541 DLIQNMVHTAMEKGGKVKEEVQ------------SILALTLAKAAAIVPGQVLTNEEMTG 588

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+  +      +    G+     +   D+EKLF 
Sbjct: 589 LVDGLFAVATPNYTPDGKTVLSVINEDDLEKLFK 622


>gi|162447739|ref|YP_001620871.1| DNA mismatch repair protein [Acholeplasma laidlawii PG-8A]
 gi|161985846|gb|ABX81495.1| DNA mismatch repair protein [Acholeplasma laidlawii PG-8A]
          Length = 570

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 159/597 (26%), Positives = 274/597 (45%), Gaps = 33/597 (5%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I  +   + N IAAGE++ERP+  IKEL+EN++DAE+  +   +   G     +TD+
Sbjct: 2   MKNIAIMDMALANTIAAGEVVERPASVIKELVENAIDAEAKNISIEVHNMGLESISVTDD 61

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GMT E +  A  RH TSKI    D ++I + GFRGEALPSI +VS + +MSR      
Sbjct: 62  GSGMTRENLHKAFLRHATSKIFKISDLNDIRSLGFRGEALPSILSVSKIEIMSRT-DAGD 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G  + +   K+       +N GT + V++LF+  PAR  ++KSE  E N IT+++ ++A+
Sbjct: 121 GYFLKLENSKVVDEGVAVLNKGTKIIVKELFYNTPARFKYMKSEYAEKNAITEIVDKLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF                 N    + I  + G+        L+    +I +  Y 
Sbjct: 181 SHPTISFKLYMDNKLVKSTL---GNNQMNQLIEAIYGKKITEGMKVLSTYLGKIKVDAYL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R   +   +FIN R +++  I  +I   Y   +   +YP+ +L + +DP  VDV
Sbjct: 238 VDPKFVRSKRSDINIFINQRYIKNYVISQSIIDGYQTFLMTNKYPLCLLYITLDPSLVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K   +  N  +    +   I+K +    +       ++ I+   +D    T +  
Sbjct: 298 NVHPQKMEAKLANERMFAYQLAPEIRKTLESGNMP-----IRQAITEVRKDLFKPTIIDI 352

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           +         +   + N     + L                 E            +   Y
Sbjct: 353 FDFVKQEDLPEQLFELNEAPVVESLIV---------------ETEKLPHLEYIGTLSGTY 397

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           ++ Q  +GL ++DQHAA ER+ +E       + K     LL  + + + E +  ++  H 
Sbjct: 398 LLYQNDEGLFLMDQHAAAERIRYEYYEDKVGALKSDYYELLVAKDLHITEQDALILHTHR 457

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             L  +G + E        + + P  L +  + + +  ++D++ D+     L+     + 
Sbjct: 458 HLLKHIGFEFENAS-----VVKHPTWLRENELDKAVHALVDQLQDNGKID-LKILRNQLA 511

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +AC G+I++ R++   E+ ++  ++ +  N   C HGRP  IKL   DIEK+F R
Sbjct: 512 KDIACKGAIKANRQLSLQEIKKIENDLRQCKNPYTCPHGRPVLIKLSNQDIEKMFKR 568


>gi|297569308|ref|YP_003690652.1| DNA mismatch repair protein MutL [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925223|gb|ADH86033.1| DNA mismatch repair protein MutL [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 642

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/642 (27%), Positives = 299/642 (46%), Gaps = 51/642 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + NQIAAGE++ERP+  +KEL+EN++DA +  +   + G      +++D+G 
Sbjct: 3   RIRVLPENLANQIAAGEVVERPASVVKELLENAVDAGARNISVQVEGRAVGLLRVSDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM ++++ +A++RH TSKI+D    + I T GFRGEALPSI +V+ L L SRP   + G 
Sbjct: 63  GMDADDLLLALERHATSKIADAEGLAAISTLGFRGEALPSIASVARLLLSSRPQGADLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +    +  V+      GT+VEVRDLF  +PAR  FLKS + E   + + ++   +A+
Sbjct: 123 LVEVRFGTVRRVQETGAAQGTVVEVRDLFANVPARRKFLKSPRTELYHVEECVKNCGLAF 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ----G 235
           P +   +        +        +   RI +++G+      V + E       +    G
Sbjct: 183 PGLGLHYQVDGRTVLQWPA--GVDDAAGRIRRLLGKRGELELVPVGEPGEGTVSEPVVTG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P        +  +F+NGR V+D+ +   +       +  GR P  VL L +DP  V
Sbjct: 241 LLLTPEETPATGARLRLFVNGRPVRDRMLSHAVAEGLHHQLLRGRQPAGVLFLRVDPATV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHP K  IRFR    + + +  +++KA+       S  L     ++  +  AP+   
Sbjct: 301 DVNVHPTKQEIRFRQSGQVHDAVRAAVRKAVELHEQEKSRRLFGSAGAAVRKPPAPEAGQ 360

Query: 356 PKYATSLT------------------------------------NTQEKLFLQENRLSTN 379
              A                                        N+ E      +     
Sbjct: 361 RAPAAESAAQGRLFRSATAAGGSVAPAAALGAASPSPPETVLAINSAEAPGDYPSSAVAQ 420

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLG------IACAQIHQNYIISQTTDGLVIVDQHA 433
                 +P           + +     G          Q+  +YII  T DG++ +DQHA
Sbjct: 421 PPPAVAEPPAPPIAPEPRAAASPAIACGLEDAAPQLLGQVLHSYIICATADGMLAIDQHA 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AHERL++E++   +N   +  Q LL P +++    E A++     ++ RLG+  E FG +
Sbjct: 481 AHERLLYERLLAQYNERGLARQALLFPAVLECSPAEAAVLEARGGEIARLGLGIETFGGH 540

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD-RIENILATMACYGSIRSGRKM 552
           +  I+ +PA+L+  +  ++L  ++   +D  T     D R+E +LA MAC  ++++G+ +
Sbjct: 541 SYLIKAVPALLASHSPTEILAGVLSRYLDDGTNRGGGDGRLEAVLAGMACKAAVKAGQVL 600

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EM  LL+EM+     S+C HGRP        ++E+ F R
Sbjct: 601 APAEMQGLLKEMQGAGIFSRCPHGRPVVRHFGARELERWFNR 642


>gi|124514220|gb|EAY55735.1| DNA mismatch repair protein MutL [Leptospirillum rubarum]
          Length = 634

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 170/634 (26%), Positives = 290/634 (45%), Gaps = 44/634 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + +++QIAAGE+IERP+  +KEL+ENSLDA S ++   I  GG+    ++DNG 
Sbjct: 3   RIHELPKIVVDQIAAGEVIERPASVVKELVENSLDAGSGKISVYIEEGGRKSIIVSDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A +RH TSKI   DD     T GFRGEAL SI +VSH+ L SR     TG 
Sbjct: 63  GIYPDDVGLAFRRHATSKIQSVDDLLLTRTLGFRGEALSSISSVSHVRLRSRTRDLETGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + ++S  +   +     +PGT +EVRDLF  +P RL FLKS   E + I + I  +A+ +
Sbjct: 123 EYSVSPGQEGILTDWTGSPGTTIEVRDLFHNLPVRLKFLKSASTEQSQIQETITLLALGH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F  S        ++ +         +   + E  ++ AV    +   I ++     
Sbjct: 183 PEVQFHLSVNGRTSLALSTRDDRRLRLLDLYPGLEEKDLSRAV---LEGEGIRVEALVLT 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NR +     VF+N R ++   +L  I    A  I    +P   + +E+ P +VDVNV
Sbjct: 240 PDKNRKDRKYQNVFLNRRWIRHPGLLQAISQGAAGRIHKDVHPGAWIWIEMVPDKVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSI----QKAINKKGISTSSVLSKKMI------------- 342
           HP K  +RF     + + + + +       +N       +     +              
Sbjct: 300 HPTKREVRFLETDRLFSLVRRVVSEGLDSFLNGSRTDPENTFGDALPERRVSSGIFPDMV 359

Query: 343 -------SSFHQDNAPKTHLPKYATSL------TNTQEKLFLQENRLSTNDLLPSDDPTY 389
                  SSF  ++       +   S            + FL  +  S      +  P +
Sbjct: 360 MESLSDRSSFRSEHPSGGERGQSRESSAERVPGAPDPRRPFLGISTPSARKKRVAHHPEF 419

Query: 390 SEDNDPVE---------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
               + ++         + E           Q +  +I++     LVI+DQH AHER+ +
Sbjct: 420 QSLPELLKSLPPPPFSFQQEDLEDLEIRILTQTYGTFILAFLGQELVIIDQHTAHERIRY 479

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +  R+     K++    L P+ + +   E   + E  ++L  LG   +  GP ++ +  I
Sbjct: 480 DSFRKGLAQGKMSMLPYLFPQTVRMTAREVENLEERVDELAHLGFDVDIQGPESVRVSGI 539

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           PA+L  ++   LL+++ +            DRI+  L T++C+ SIR+   +   ++ R+
Sbjct: 540 PALLEGEDSASLLQELSESSQGFEFPLVRSDRIDETLMTLSCHTSIRANHSLGKEDLGRI 599

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +R + +      C HGRPT + L  + +EK F R
Sbjct: 600 VRMLLRTEYPFSCPHGRPTILSLSPNVLEKWFHR 633


>gi|189183683|ref|YP_001937468.1| DNA mismatch repair protein MutL1 [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180454|dbj|BAG40234.1| DNA mismatch repair protein MutL1 [Orientia tsutsugamushi str.
           Ikeda]
          Length = 680

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 209/676 (30%), Positives = 353/676 (52%), Gaps = 84/676 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS+  IN+IAAGE++ERP+  +KEL+ENS+D+ + +V+  +   GK+   ++DNG G
Sbjct: 4   IKYLSDTTINRIAAGEVVERPASVVKELVENSIDSGAMKVDITLEKSGKNLIIVSDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M++E++  A++RH TSK+++ D  NI+TFGFRGEALPSI +VS + ++++   ++   +I
Sbjct: 64  MSAEDLETAIERHTTSKLNENDIMNINTFGFRGEALPSIASVSRMRIVTKSKLHDQAYEI 123

Query: 122 AIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +    +   +  P     GT +EVRDLFF  PARL FL+S++ E  +  DV++R+AI+Y
Sbjct: 124 NVHGGVKTKINSLPQLQLTGTKIEVRDLFFATPARLKFLRSDRTEYIVCYDVVKRLAISY 183

Query: 180 PKVSFTFSTIKSNRYKMNFQST---NGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           P ++F+         K+   S    +     RIS+++ ++FI+NA+ +  + +E+++ G+
Sbjct: 184 PHIAFSLVHDDKTILKLKASSQLSFDDARKSRISEILSKNFIDNAISIGIERDELSITGF 243

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PT+N+ +A    +F+N R V+DK +++ IR AY   +   RYPVVV+ + + P  VD
Sbjct: 244 VSVPTYNKASAEDQLLFVNNRPVKDKLLMTAIRLAYQGVLARERYPVVVIFISVAPHFVD 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAI----NKKGISTSSVLSKKMISSFHQDNAPK 352
           VNVHP KS +RF + +++R  II +I++A+           +S  +K M   +  D + K
Sbjct: 304 VNVHPTKSEVRFHDSSLVRGIIISAIKQALLNTSQLVSSIAASDANKYMKPQYDTDISEK 363

Query: 353 THLPK------------------------YATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
             L K                          +   + Q    + +N     +    +  +
Sbjct: 364 LELSKDIKNIQQFPLQELVNNFSKDFNVNLKSEFQDIQANNLVSDNEQQKIESTTENIKS 423

Query: 389 YSEDND--------------------------PVEESEATHYQLGIACAQIHQNY----- 417
           +S  N                            +  +E           +++ ++     
Sbjct: 424 FSAFNQLGGNTESNQHMSILDDDKTKDDIIARNIATNEKVDVNKQENIQKLNDSFCNNFG 483

Query: 418 IISQTTDGLVIVDQH------------------AAHERLIFEKMRQDFNSTKITSQTLLT 459
              Q   GL     H                  AAHER+ +E +R  F + +I  Q LL 
Sbjct: 484 DSYQLPLGLACAQFHGNYILAQTVDSLIIVDQHAAHERITYENLRSQFQAGQIIRQRLLM 543

Query: 460 PEIIDLLE-GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           P+++ L +      + +  +++  LG+  ER G   + + E+PAIL   +I  ++ D+ D
Sbjct: 544 PQVVILPDIVRVEKLCDKMQEILALGMGFERCGDVQVKVFEMPAILQSVDIEAVVNDVAD 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            ++ +     L D +E IL + +CY SIRSGR +   EMN LLR++E  P S QCNHGRP
Sbjct: 604 YLLTTDDHILLADMVEKILQSYSCYHSIRSGRILTIAEMNSLLRQIETTPFSGQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+++ +L DIEKLFGR
Sbjct: 664 TYVRFELKDIEKLFGR 679


>gi|153809079|ref|ZP_01961747.1| hypothetical protein BACCAC_03387 [Bacteroides caccae ATCC 43185]
 gi|149128412|gb|EDM19631.1| hypothetical protein BACCAC_03387 [Bacteroides caccae ATCC 43185]
          Length = 633

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 164/634 (25%), Positives = 291/634 (45%), Gaps = 48/634 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  V  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNVHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+ + G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSKVESQEAVSCSKGSNFSIKNLFFNIPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPVSP----LRQRIMAIFGKKLNQQLLNIEVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP+G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPVGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     S          I +F Q+ +      +
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKESLGKFSAIPSIDFDTEDMPDIPAFEQNLSSAPPTVQ 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDD-----PTYSEDNDPVEESEATHYQ------- 405
           Y +     +           +   +  +D        S+ N+P  E E            
Sbjct: 361 YNSDYNPFKVSAGGGGGGAYSRSKVDWEDLYGGLTKASKMNNPQPEPEMDWEDSSMGGES 420

Query: 406 --------------------------LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                                      G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 AVMEERTETVMSAASSTLYASEPVIEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSDLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           IP+ +   N  +L+R+++   ++       ++    +  T+A   +I  G+ + + EM  
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGN-DVKEEVQNILALTLARAAAIVYGQVLSNEEMVS 599

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 600 LVDSLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|88604448|ref|YP_504626.1| DNA mismatch repair protein MutL [Methanospirillum hungatei JF-1]
 gi|88189910|gb|ABD42907.1| DNA mismatch repair protein MutL [Methanospirillum hungatei JF-1]
          Length = 599

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 158/598 (26%), Positives = 286/598 (47%), Gaps = 13/598 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNG 60
           I+ L E  ++ IAAGE+++RP   +KEL+EN++DA SSR+   ++   G  S  +ITD+G
Sbjct: 8   IQVLDESTVHLIAAGEVVDRPVSIVKELVENAIDAASSRITVELSTAHGVISRIRITDDG 67

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ S+++ +A   H TSKI   +D  +  T GFRGEAL SI AVS++T++++P +++T 
Sbjct: 68  VGIPSDQVRIAFLAHATSKIRTGEDLLSCRTLGFRGEALASIAAVSYVTMITKPKESDTA 127

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               I+G ++          GT + V ++FF  PAR  FLKS Q E   IT ++   A  
Sbjct: 128 ILFRITGGEVVECTETGAPNGTSITVEEVFFNTPARRKFLKSLQTEVAHITSLLESFACL 187

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           YP ++F +      ++  +      +  +    +   D     + +  +     + G   
Sbjct: 188 YPGITFRYLVNGIEKFSTH---GGSDLSDIFRALYPSD-AGMMIPIRGRDGNTLVTGLIS 243

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P   + N  +  + +NGR VQ   ++S ++ AY   IP   +PV VL+LEI P +VD N
Sbjct: 244 LPKLVKQNRQRLLIAVNGRLVQSPAMVSAVKRAYGSLIPGNVWPVAVLMLEIPPAEVDAN 303

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLPK 357
           +HP K  +RF     I + ++++++ A++   +    +   +    S     +P     +
Sbjct: 304 IHPTKREVRFSAERTILDLLVRTVRLALDDANLLDLPAAADEDAQISLSDIPSPAPAPIR 363

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           Y         +   +               T  +++          +       Q+   Y
Sbjct: 364 YGAVAAAPVSRQVCEATLSGYRTTSRQLLQTRLQESADDATVRDERFPELFWIGQVGGTY 423

Query: 418 IISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           I++    G L ++DQHAAHER+ +++++    S  + +Q L+ P ++ L   E  LI   
Sbjct: 424 IVASDKTGALFLIDQHAAHERVRYDQLK-QQESLHLKTQELIAPVVLTLSPSEAGLIPSV 482

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L   G   E FG +   +R +P +L +   P+ +R+II  I+            E +
Sbjct: 483 LPVLTDEGFIIEPFGQDTWCVRGVPVVLGRYEDPETVREIIGTILSEDEGPVR--LKEQV 540

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L  +AC  ++++G  +   +   ++ ++ +  +   C HGRPT I     ++ K+F R
Sbjct: 541 LRLVACRSAVKAGAVLTPEQGMDIINQLSQTADPWTCPHGRPTIISFSCQELGKMFKR 598


>gi|189502520|ref|YP_001958237.1| hypothetical protein Aasi_1174 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497961|gb|ACE06508.1| hypothetical protein Aasi_1174 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 628

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 188/626 (30%), Positives = 318/626 (50%), Gaps = 41/626 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R L + + NQIAAGE+I+RP+  +KEL+EN++DA S+ ++ VI   GK+  Q+ D+G GM
Sbjct: 7   RLLPDSLANQIAAGEVIQRPASVVKELVENAVDAASTHIKVVIKDAGKTLIQVIDDGIGM 66

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  +  M++++H TSKIS  DD  NI T GFRGEALPSI A++ + + +R      G ++
Sbjct: 67  SEVDARMSLEKHATSKISQADDLFNIRTMGFRGEALPSIAAIAQVEIETRTEDAELGTRL 126

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            + G KI    PVA   GT + V++LFF +PAR NFLKSE VET  I +  + +A+A P 
Sbjct: 127 VVEGSKIKLQEPVATTKGTTISVKNLFFNVPARRNFLKSEPVETKHIIEEFQHIALARPD 186

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           +SF+    +   Y +           RI  + GE +    +   E ++ I + GY G P+
Sbjct: 187 ISFSLYQNEQETYHLPAT----KLANRIVHLFGETYKKQLIPCQEGTDIIQIHGYVGNPS 242

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           + +    + + F+N R ++  ++   +++A+ E IP   +P  VL +EI P ++DVNVHP
Sbjct: 243 YAKKTRGEQFFFVNNRFIKSTYLHHAVKSAFEELIPKDTFPFYVLFIEISPERIDVNVHP 302

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK--------- 352
            K+ I+F +  ++ + +  S+++A+                        P+         
Sbjct: 303 TKTEIKFDDERMVYSILQASVRQALAHHTTPAFDFEQNINCDPLGLQEQPRQKSFTTSTD 362

Query: 353 ---THLPKYATSLTNTQE----------------KLFLQENRLSTNDLLPSDDPTYSEDN 393
              +   K+     N QE                 +  Q+ +L   + + S     S   
Sbjct: 363 RAYSSFKKFDNPSVNQQEWEQLFQRINVDTDSTTPIHGQQAQLLDLENMLSTVNEVSSMA 422

Query: 394 DPVEESEATHYQLGI-----ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
              E  +             A  Q+H  YI++    GL++++QHAAHER+++EK  +   
Sbjct: 423 TMQENIQPFSMLTHEGTDTAAKMQLHATYILASVKSGLLLINQHAAHERILYEKYIEHLQ 482

Query: 449 S-TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +    TSQ LL P  I+L   + ALI +++  L  LG   E FG N+I +   PA  ++ 
Sbjct: 483 NHHAGTSQQLLFPHQIELNPADFALIQDYEGTLGTLGFAIEDFGKNSIILVGYPAEAAQH 542

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           N  QLL DI+++I  + +  +L    EN    +A + +I+ G+K+  +E++ L+ ++   
Sbjct: 543 NPKQLLEDILEQIKWNKSHLSLP-IQENAARALAKHAAIQPGKKLTMVEIDSLVDQLFAC 601

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFG 593
            NS+    GR  ++ + L ++  L  
Sbjct: 602 KNSTHAPDGRRIWVIITLEELASLLK 627


>gi|329957333|ref|ZP_08297853.1| DNA mismatch repair protein [Bacteroides clarus YIT 12056]
 gi|328523046|gb|EGF50149.1| DNA mismatch repair protein [Bacteroides clarus YIT 12056]
          Length = 631

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/630 (26%), Positives = 287/630 (45%), Gaps = 45/630 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  +I   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAGEIHVLITDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAEVELKTRPADEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+   G+   V++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSKVESQEAVSCPKGSNFSVKNLFFNIPARRKFLKANSTELSNILTEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F   +  +  + +          +RI  V G+      + ++  +  I + G+   P
Sbjct: 185 DVAFYLYSNDTELFNLPVMP----LRQRILAVFGKKLNQQLLSVDVDTTMIKVSGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETSRKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     S          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKESLGKFNAVPSIDFDTEGMPDIPAFEQSRPIEPPKVH 360

Query: 358 YATSLTN--------------------TQEKLFLQENRLSTNDLLPSDDPTY-------- 389
           Y                            E L+    + S  +     +  +        
Sbjct: 361 YNADFNPFKTSSASSYGGGGNYSRQSVEWEGLYSGLEKASKMNEPVMAEEPFDFGETASA 420

Query: 390 -------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                  S  +  +   E +  + G    Q    +I++    GL+++DQH AH R++F++
Sbjct: 421 VAEPVAASSQSSLLYSGEPSSMEKGAQHLQFKGRFILTSVKSGLMLIDQHRAHIRVLFDR 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
                   +  SQ +L PE+I L   E A++    +DL  +G      G  + AI  IP+
Sbjct: 481 YMNQIRQKQGVSQGVLFPEMIQLPASEAAVLESLSDDLAAVGFDLSPLGGGSYAINGIPS 540

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            +   N  +L+R+++   ++       ++    +  T+A   +I  G+ + + EM+ L+ 
Sbjct: 541 GIEGLNPVELVRNMVHTAMEKGN-DVKEEVRTILALTLARAAAIVYGQVLSNDEMSNLVD 599

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            +      +    GR     +K  DIEKLF
Sbjct: 600 SLFACSTPNYTPDGRTVLATIKEEDIEKLF 629


>gi|160882395|ref|ZP_02063398.1| hypothetical protein BACOVA_00344 [Bacteroides ovatus ATCC 8483]
 gi|293369507|ref|ZP_06616086.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           ovatus SD CMC 3f]
 gi|299148151|ref|ZP_07041213.1| DNA mismatch repair protein MutL [Bacteroides sp. 3_1_23]
 gi|156112208|gb|EDO13953.1| hypothetical protein BACOVA_00344 [Bacteroides ovatus ATCC 8483]
 gi|292635392|gb|EFF53905.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           ovatus SD CMC 3f]
 gi|298512912|gb|EFI36799.1| DNA mismatch repair protein MutL [Bacteroides sp. 3_1_23]
          Length = 633

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 161/634 (25%), Positives = 291/634 (45%), Gaps = 48/634 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S   ++ + G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSQVESQEAISCSKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + ++  +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPV----SQLRQRILAIFGKKLNQQLLNIDVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPAGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F +  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEEKISSEPPKVH 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDD-----PTYSEDNDPVEESEATH--------- 403
           Y T     +           +   +  +D        S+ N+P  E E            
Sbjct: 361 YNTDYNPFKVSAGGGGGGSYSRSKVEWEDLYGGLTKASKMNNPQPEPEMDWEDSSIGGEP 420

Query: 404 ------------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                                    + G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 AFVEEKIETVTSAASSTLYANEPVMEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           IP+ +   N  +L+R+++   ++       ++    +  T+A   +I  G+ + + EM  
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGN-DVKEEIQNILALTLARAAAIVYGQVLSNEEMVS 599

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 600 LVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|237736846|ref|ZP_04567327.1| DNA mismatch repair protein mutL [Fusobacterium mortiferum ATCC
           9817]
 gi|229420708|gb|EEO35755.1| DNA mismatch repair protein mutL [Fusobacterium mortiferum ATCC
           9817]
          Length = 641

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 187/651 (28%), Positives = 320/651 (49%), Gaps = 76/651 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E + N IAAGE++E P+  IKEL+ENSLDAES  +   +  GG+    I D+G 
Sbjct: 8   KIKILDESVSNIIAAGEVVENPASMIKELLENSLDAESKSIRIEVKNGGRD-VAIIDDGV 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++ ++++RH TSKIS  DD  N++T+GFRGEAL SI AVS +++ SR  ++  G+
Sbjct: 67  GMSQDDLLLSIERHATSKISKKDDLYNLYTYGFRGEALSSISAVSKMSISSRVEESEVGS 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI + G K++S++ V  N GT +E+++LFF  PARL FL+    E   I D+I + A++ 
Sbjct: 127 QITVLGGKVTSLKDVQRNRGTTIEIKELFFNTPARLKFLRKPSTEYINIKDIIIQEALSN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+            ++ +++       I ++ G++ + N  +           GY G 
Sbjct: 187 PDVAIMLILDGK----VSIKTSGNGLDNAIVEIFGKNVLKNMKKFKL--------GYLGN 234

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   +  + F+N R V+ K + S +   Y   +  G+YP  ++ L+I+P+ VDVNV
Sbjct: 235 GAIYRSTKDSIFTFVNNRMVKSKIVESAVIDGYYTKLMKGKYPFAIIFLDINPKDVDVNV 294

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM---------ISSFHQDNA 350
           HP+K  ++F +   + N++++ I+K   +     S  L +K+          S F +   
Sbjct: 295 HPSKKIVKFADEEEVYNYVLKEIEKTFARDDDFVSPTLQEKIEKEESKFLDFSEFEKFTP 354

Query: 351 PKTHLPKYAT---------------------------------------SLTNTQEKLFL 371
            K+   ++                                              ++++  
Sbjct: 355 MKSEPQQFQELLEEEKDIEEEIFGEKREKLQEKDILREEFEEKKEYEVIEDKRIEKEIVR 414

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESE--------ATHYQLGIACAQIHQNYIISQTT 423
           +EN     +    +        + V+ SE         +         Q+   +I+ +  
Sbjct: 415 EENIEFNTESSSKNKIPLDIYEEKVKTSEITVKKVEEKSKKIEFRVIGQVFGTFILVERD 474

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
               I DQH  HER+++EK++  +  TK++ Q LL P  I +   E  LI E +E+  + 
Sbjct: 475 GVFEIYDQHIVHERILYEKLKAQYYGTKVSMQQLLVPIRILVDPRERELIFEEEENFTKA 534

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + +RF  N I IR +P +  + +I  + R+I+  I ++       D  E+IL +M+C 
Sbjct: 535 GFEIDRFSDNEILIRAVPMLDLRDSIENIFREILKNIKENRNI----DIRESILISMSCK 590

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           G+I++  K+   EM R++RE+ +      C HGRP   K+   D+EKLF R
Sbjct: 591 GAIKANEKLNHEEMERIVRELHEIGE-YTCPHGRPIITKITRDDLEKLFKR 640


>gi|237714324|ref|ZP_04544805.1| DNA mismatch repair protein mutL [Bacteroides sp. D1]
 gi|262408157|ref|ZP_06084704.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645117|ref|ZP_06722842.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           ovatus SD CC 2a]
 gi|294809731|ref|ZP_06768418.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445488|gb|EEO51279.1| DNA mismatch repair protein mutL [Bacteroides sp. D1]
 gi|262353709|gb|EEZ02802.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639541|gb|EFF57834.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           ovatus SD CC 2a]
 gi|294443065|gb|EFG11845.1| DNA mismatch repair protein, C-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 633

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/645 (25%), Positives = 289/645 (44%), Gaps = 70/645 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI    D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIRQAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S   V+ + G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSQVESQEAVSCSKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPV----SQLRQRILAIFGKKLNQQLLNIEVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPTGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F +  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEEKMSSEPPKIH 360

Query: 358 YATSLTN------------------TQEKLF------LQENRLSTNDLLPSDDPTYSEDN 393
           Y T                        E L+       + N       +  +D +     
Sbjct: 361 YNTDYNPFKVSAGGGGGGSYSRSKVEWEDLYGGLTKASKMNNPQPEPEMDWEDSSIGGQP 420

Query: 394 DPVEE--------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
             VEE              +     + G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 TFVEEKMETVTSAASSTLYASEPVIEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS----------- 548
           IP+ +   N  +L+R+++   ++  +     D  E I        SI +           
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGS-----DVKEEIQ-------SILALTLARAAAIVY 588

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           G+ + + EM  L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 589 GQVLSNEEMVSLVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|332704043|ref|ZP_08424131.1| DNA mismatch repair protein mutL [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554192|gb|EGJ51236.1| DNA mismatch repair protein mutL [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 645

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 186/650 (28%), Positives = 299/650 (46%), Gaps = 68/650 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  ++ NQIAAGE++ERP+  +KEL+EN LDA +SRV+  I  GG+    + D+G+
Sbjct: 6   SIRILPSELANQIAAGEVVERPASVVKELVENCLDAGASRVDVAIERGGQGLVLVQDDGW 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM SEE+ +AV RH TSKI   +D   I +FGFRGEALPSI +VS L + S         
Sbjct: 66  GMPSEELELAVTRHATSKIGRVEDLFAIRSFGFRGEALPSIASVSRLRMASLAADQQEAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I++   +I++  P A+  GT +EVRDLFF +PARL FLK++  E     +++ R+A+A+
Sbjct: 126 SISVEAGRITTQGPDALACGTRIEVRDLFFNVPARLKFLKTQATEAKRCQEIVARLALAH 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+F F+T       +           R++++            +   + I   G  G 
Sbjct: 186 TAVAFGFTTDGR---TLLRFPPGQELARRLAEIWPPPICEGLAPFDFSLHGIRAHGLAGK 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +   ++   ++NGR VQD+ ++S +R AY+  +    YP V+L LE+ P +VDVNV
Sbjct: 243 PEAAQARGDRLLFYVNGRPVQDRLLVSCVRQAYSGRLLSREYPQVLLFLELPPEEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           HPAK  +RF++  +I   I +++ +A+     G+  S    ++    F +  +     P 
Sbjct: 303 HPAKLEVRFKDEAVIFTVIRRALLQALETEGHGVHPSGNNLRESAMPFGRKASADPQQPA 362

Query: 358 YATSLTNTQEKLFLQEN------------------------------------RLSTNDL 381
              S +  Q     Q +                                      S+ D 
Sbjct: 363 KFPSYSEFQASESRQSSLDIRHLASAQPSPRTESTTPGPYLSGESKTEAYADTSASSMDS 422

Query: 382 LPSDDPTYSEDNDPVEE----------------SEATHYQLGIACAQIHQNYIISQTTDG 425
           + S                               E   +   +   Q+   Y++    DG
Sbjct: 423 VDSRTDARPWTESARPAHASRPTGPTCVAGQVLPEHAEHGAPVYLGQVADTYLVLCLPDG 482

Query: 426 -LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            L ++DQHAAHER+++ +      S +   + L  P  + L   E + + E   +L  LG
Sbjct: 483 SLGLLDQHAAHERVLYAR--HASQSGRSEKRALAVPLELPLHASEQSKLDELWSELLDLG 540

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
               R  P+ + I  IPA+L       LLR+ +          +   R+ ++ A ++C  
Sbjct: 541 FNLRRPRPDLLTIVSIPAMLEPAAARDLLRESLT------GQSSPDGRLHDLWALLSCKA 594

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++++ + +   E   LL E    P    C HGRP  I+L   ++EKLF R
Sbjct: 595 ALKANQPLAQAEAMALLTEWAATPEREYCPHGRPILIRLSAKELEKLFKR 644


>gi|299144076|ref|ZP_07037156.1| DNA mismatch repair protein MutL [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518561|gb|EFI42300.1| DNA mismatch repair protein MutL [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 619

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 180/632 (28%), Positives = 300/632 (47%), Gaps = 52/632 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E  I +IAAGEIIE P+  +KEL+ENS+DA++  +   + G   S+ +ITD+G
Sbjct: 1   MSIILLDEATIAKIAAGEIIENPASIVKELLENSIDAKAKNIIVEVRGNIGSYIRITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  +++ +A  RH TSK+  ++D  NI + GFRGEAL SI  +S + ++++   + +G
Sbjct: 61  IGMDKDDLNLAFLRHSTSKLKTAEDLHNIVSLGFRGEALASISHISKIEVLTKTKDDLSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  I   KI  +  + +  GT   V+D+F+ +P R  +LK +  E N I +V++++A+ 
Sbjct: 121 TRAEIEDGKIVKMNSIGLPVGTTFYVKDVFYNMPVRKKYLKLDNTEFNYIYEVVQKIALG 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P +S                S   N    I  ++G +  +N +E N  SN   ++ +  
Sbjct: 181 NPDISIKLIRDNKVILN---SSATDNLKNHIFSILGREVASNLIEGNFSSNSYKIKSFIS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R N    Y++INGR V++  I   I   Y   IPL RYPV +L ++IDP  VDVN
Sbjct: 238 DNKLYRSNRYHQYIYINGRYVKNLDISKEIEKHYYSLIPLNRYPVFLLYIDIDPILVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-----------Q 347
           VHP K  ++      I   +   + + +       + +  +    + +           Q
Sbjct: 298 VHPKKHEVKLSKENNILAILSDLVDETLYPNRSIINPIKEEPKERNINIFEMFKEVDSEQ 357

Query: 348 DNAPKTHLPKYATSLTNTQEK--LFLQENR----------LSTNDLLPSDDPTYSEDNDP 395
           +   KT    Y  S+   + K   F +E +           +  D    +    + + + 
Sbjct: 358 NTQNKTENFIYNNSIEEFESKTNAFFEEQKHIYNNTNNTCENNEDFKNINSSLENSNTNN 417

Query: 396 VEESEATHYQLGIA--CAQIHQNYIISQTT--DGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            E+S      L        + + +II +        ++DQHAAHER+++EK ++ F +++
Sbjct: 418 NEDSSKIDCDLLNTRLVGILFKTFIILENYSKGRCYLIDQHAAHERILYEKFKEQFENSE 477

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + SQ L+TPEII+L   E   +  + E    LG + E FG N+I IR++P I        
Sbjct: 478 VLSQILITPEIIELSVEEKEKLENNYELFKSLGFEIEEFGENSIVIRQVPMIFGHGVRYD 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR---------SGRKMQSIEMNRLLR 562
            + D ID +     +    D  +           I          +G ++  +E+  L++
Sbjct: 538 FIHDTIDSLDKIKQSSYEVDSYK-----------IMKKACKAAVKAGDELSDMEVQALIK 586

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +  N   C HGRPT I+LK  +IEKLF R
Sbjct: 587 SLLECKNPYTCPHGRPTIIELKSLEIEKLFLR 618


>gi|237719068|ref|ZP_04549549.1| DNA mismatch repair protein mutL [Bacteroides sp. 2_2_4]
 gi|229451447|gb|EEO57238.1| DNA mismatch repair protein mutL [Bacteroides sp. 2_2_4]
          Length = 633

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 160/634 (25%), Positives = 291/634 (45%), Gaps = 48/634 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S   ++ + G+   +++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSQVESQEAISCSKGSNFSIKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + ++  +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPV----SQLRQRILAIFGKKLNQQLLNIDVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPAGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F +  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEEKISSEPPKVH 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDD-----PTYSEDNDPVEESEATH--------- 403
           Y T     +           +   +  +D        S+ N+P  E E            
Sbjct: 361 YNTDYNPFKVSAGGGGGGSYSRSKVEWEDLYGGLTKASKMNNPQPEPEMDWEDSSIGGEP 420

Query: 404 ------------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                                    + G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 AFVEEKIETVTSAASSTLYANEPVMEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           IP+ +   N  +L+R+++   ++       ++    +  T+A   +I  G+ + + EM  
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGN-DVKEEIQNILALTLARAAAIVYGQVLSNEEMVS 599

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 600 LVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|189463695|ref|ZP_03012480.1| hypothetical protein BACINT_00026 [Bacteroides intestinalis DSM
           17393]
 gi|189438645|gb|EDV07630.1| hypothetical protein BACINT_00026 [Bacteroides intestinalis DSM
           17393]
          Length = 642

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/648 (25%), Positives = 281/648 (43%), Gaps = 66/648 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQEIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI +  D   + T GFRGEAL S+ AV+ + L +R      G +
Sbjct: 65  MSETDARLAFERHATSKIKEAADLFALRTMGFRGEALASVAAVAEVELKTRTANEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G K+ S   V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 IVIAGSKVESQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILTEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F   +  +  + +          +RI  V G+      + ++  +  + + G+   P
Sbjct: 185 EVAFYLYSNDTELFNLPVMP----LRQRILAVFGKKLNQYLLSVDVDTTMVKVSGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K+ I+F N   I   +  S+++++ K     S     + +      +  +   P    
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFNAVPSIDFDTEGMPDIPAFDQTRPIEPPKVH 360

Query: 357 ------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL---- 406
                  + TS  ++         ++    L    +     +    EE            
Sbjct: 361 YNSDFNPFKTSSASSYSGGNYSRPKVDWEGLYDGLEKASKMNAPMEEEPFVDETDWASAP 420

Query: 407 -----------------------------------GIACAQIHQNYIISQTTDGLVIVDQ 431
                                              G    Q    +I++    GL+++DQ
Sbjct: 421 VSTDMSEERTPYIPETQASSSLSAPLYANEPTVEKGAQHFQFKGRFILTSVKSGLMLIDQ 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           H AH R++FE+     +  +  SQ +L PEI+ L   E A++    ED   +G +    G
Sbjct: 481 HRAHIRVLFERYMNQISQKQGVSQGVLFPEIVQLPASEAAVLESIMEDFSAVGFELTPLG 540

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT-----YTLQDRIENILATMACYGSI 546
             + AI  IP+ +   N  +L+R+++   ++          T+        A       I
Sbjct: 541 GGSYAINGIPSGIEGLNPVELVRNMVHTAMEKGNDVKEEVQTILALTLAKAAA------I 594

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             G+ + + EM  L+  +   P  +    GR     +K  DIEKLF R
Sbjct: 595 VYGQVLSNEEMANLVDSLFACPTPNYTPDGRTVLSTIKEEDIEKLFSR 642


>gi|298480178|ref|ZP_06998376.1| DNA mismatch repair protein MutL [Bacteroides sp. D22]
 gi|298273459|gb|EFI15022.1| DNA mismatch repair protein MutL [Bacteroides sp. D22]
          Length = 633

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/645 (25%), Positives = 289/645 (44%), Gaps = 70/645 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI    D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIRQAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S   V+ + G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSQVESQEAVSCSKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPV----SQLRQRILAIFGKKLNQQLLNIEVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPTGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F +  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEEKISSEPPKIH 360

Query: 358 YATSLTN------------------TQEKLF------LQENRLSTNDLLPSDDPTYSEDN 393
           Y T                        E L+       + N       +  +D +     
Sbjct: 361 YNTDYNPFKVSAGGGGGGSYSRSKVEWEDLYGGLTKASKMNNPQPEPEMDWEDSSIGGQP 420

Query: 394 DPVEE--------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
             VEE              +     + G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 AFVEEKMETVTSAASSTLYASEPVIEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS----------- 548
           IP+ +   N  +L+R+++   ++  +     D  E I        SI +           
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGS-----DVKEEIQ-------SILALTLARAAAIVY 588

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           G+ + + EM  L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 589 GQVLSNEEMVSLVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|310778298|ref|YP_003966631.1| DNA mismatch repair protein MutL [Ilyobacter polytropus DSM 2926]
 gi|309747621|gb|ADO82283.1| DNA mismatch repair protein MutL [Ilyobacter polytropus DSM 2926]
          Length = 633

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 174/646 (26%), Positives = 304/646 (47%), Gaps = 71/646 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E + N IAAGE++E P+  IKE++ENSLDA+S+ +   +   G+    I+DNG G
Sbjct: 4   IKILDESVSNIIAAGEVVENPASMIKEILENSLDAKSTNIRIQVKNSGRD-VTISDNGVG 62

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ +++ + ++RH TSKI   +D  N++T+GFRGEAL SI +VS + + S+   +  G +
Sbjct: 63  MSKDDLLLCIERHATSKIFNKEDIFNLYTYGFRGEALASIASVSKMRITSKRESDELGTE 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     K++ V PV++N GT +E+++LF+  PARL FL+ +  E   I + + + ++A P
Sbjct: 123 IKALAGKVTKVSPVSVNEGTEIEIKELFYNTPARLKFLRKKSTEYGKIKETVLKESLANP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F+         K    ++       I ++ G + + N  E           G+ G  
Sbjct: 183 NVGFSLEIDGRELLK----TSGKGIQNTILELFGRNVLKNLKEFPL--------GFLGNL 230

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + ++NGR V+ + +   I   Y   +  GRYP  ++ LEIDP+++DVNVH
Sbjct: 231 EITRSSKDYMHTYVNGRYVKSQILEKAIIDGYYTKLTKGRYPFAIIFLEIDPKEIDVNVH 290

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV---------------------LSK 339
           P+K  ++F   + + N +   I+KAI +     S                       +  
Sbjct: 291 PSKKIVKFSESSFVYNQVFSEIEKAIGEDEDIVSLEMSFQNREKNVENFLDLDEFKGIID 350

Query: 340 KMISSFH-------------QDNAPKTHLPKYATSLTNTQE------------------K 368
           K IS+               ++   +  +P +   +  TQE                  K
Sbjct: 351 KEISTPKKTPDKEHSEKEKTEEKNNEKTVPSFKEEVIKTQEVSLLDGEGVFQKKYSAEDK 410

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                  +   +         SE    + E             Q   +YII +    L I
Sbjct: 411 NIKNRPEVLQEEKKIYQSIDVSEKKPEIPEKTIEEKNYFRVIGQFMNSYIIVERNKTLEI 470

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
            DQH   ER+++E +++   S ++ +Q LL P  + L   E  ++ E+ E  +  G + E
Sbjct: 471 YDQHIVQERVLYETLKKRHFSREVATQNLLVPLKLRLSYEEKNIVFENLEIFNEFGFEIE 530

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG + + +R +P    + +I    R +++E+ +      ++D  E I+ +M+C  SI++
Sbjct: 531 DFGDDEVLLRGVPVFDFRTSIENTFRFMLEELKNE---TGVKDFREKIIISMSCRNSIKA 587

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           G K+   EM  L++ +        C HGRP  +K+ L ++EK F R
Sbjct: 588 GEKLSFDEMELLIKRLHDVGK-YTCPHGRPIILKVTLEELEKNFKR 632


>gi|295088070|emb|CBK69593.1| DNA mismatch repair protein MutL [Bacteroides xylanisolvens XB1A]
          Length = 633

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/645 (25%), Positives = 290/645 (44%), Gaps = 70/645 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI    D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIRQAADLFALRTMGFRGEALASIAAVAQVELKTRPESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S   V+ + G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSQVESQEAVSCSKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPV----SQLRQRILAIFGKKLNQQLLNIEVNTTMVKISGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPTGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F +  + +     
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEEKMSSEPPKIH 360

Query: 358 YATSLTN------------------TQEKLF------LQENRLSTNDLLPSDDPTYSEDN 393
           Y T                        E L+       + N       +  +D +   + 
Sbjct: 361 YNTDYNPFKVSAGGGGGGSYSRSKVEWEDLYGGLTKASKMNNPQPEPEMDWEDSSIGGEP 420

Query: 394 DPVEE--------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
             VEE              +     + G    Q    +I++    GL+++DQH AH R++
Sbjct: 421 AFVEEKMETVTSAASSTLYASEPVIEKGNQHLQFKGRFILTSVKSGLMLIDQHRAHIRVL 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  
Sbjct: 481 FDRYMVQIQQKQGVSQGVLFPEILQLPASEAAVLQSIMDDLSAVGFDLSNLGGGSYAING 540

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS----------- 548
           IP+ +   N  +L+R+++   ++  +     D  E I        SI +           
Sbjct: 541 IPSGIEGLNPVELVRNMLHTAMEKGS-----DVKEEIQ-------SILALTLARAAAIVY 588

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           G+ + + EM  L+  +   P+ +    G+     +K  DIE+LF 
Sbjct: 589 GQVLSNEEMVSLVDNLFACPSPNYTPDGKTVLTTIKEEDIERLFK 633


>gi|167765429|ref|ZP_02437542.1| hypothetical protein BACSTE_03819 [Bacteroides stercoris ATCC
           43183]
 gi|167697057|gb|EDS13636.1| hypothetical protein BACSTE_03819 [Bacteroides stercoris ATCC
           43183]
          Length = 630

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/629 (26%), Positives = 290/629 (46%), Gaps = 44/629 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE++ +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEATEIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL S+ AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASVAAVAEVELKTRPAGEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+   G+   V++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSKVESQEAVSCPKGSNFSVKNLFFNIPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F   +  +  + +          +RI  + G+      + ++  +  I + G+   P
Sbjct: 185 DVAFYLYSNDAELFNLPVMP----LRQRILAIFGKKLNQQLLSVDVDTTMIKVSGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 EASRKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     S          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKESLGKFNAVPSIDFDTEGMPDIPAFEQSRPIEPPKVH 360

Query: 358 YATSLTNTQ-------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE---------- 400
           Y       +               +    + L S     S  N+PVEE            
Sbjct: 361 YNADFNPFKTSSASSYSSGGSYPRQSVEWEGLYSGLEKASRMNEPVEEEPLAFEEAVSAV 420

Query: 401 -----------------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                            ++  + G    Q    +I++    GL+++DQH AH R++F++ 
Sbjct: 421 TEAVEPASQSSSLYSGDSSSMEKGAQHLQFKGRFILTSVKSGLMLIDQHRAHVRVLFDRY 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                  +  SQ +L PE+I L   E A++    +DL  +G      G  + AI  IP+ 
Sbjct: 481 MTQIRQRQGVSQGVLFPELIQLPVSEAAVLESLSDDLAAVGFDFSPLGGGSYAINGIPSG 540

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           +   N  +L+R+++   ++   +   ++    +  T+A   +I  G+ + + EM+ L+  
Sbjct: 541 IEGLNPVELVRNMVHTAMEKG-SDVKEEVRTILALTLARAAAIVYGQVLSNDEMSNLVDS 599

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           +      +    GR     ++  DIEKLF
Sbjct: 600 LFACSTPNYTPDGRTVLSTIREEDIEKLF 628


>gi|29349259|ref|NP_812762.1| DNA mismatch repair protein mutL [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570395|ref|ZP_04847804.1| DNA mismatch repair protein mutL [Bacteroides sp. 1_1_6]
 gi|298384799|ref|ZP_06994358.1| DNA mismatch repair protein MutL [Bacteroides sp. 1_1_14]
 gi|81842112|sp|Q8A120|MUTL_BACTN RecName: Full=DNA mismatch repair protein mutL
 gi|29341167|gb|AAO78956.1| DNA mismatch repair protein mutL [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840776|gb|EES68858.1| DNA mismatch repair protein mutL [Bacteroides sp. 1_1_6]
 gi|298261943|gb|EFI04808.1| DNA mismatch repair protein MutL [Bacteroides sp. 1_1_14]
          Length = 640

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 166/641 (25%), Positives = 290/641 (45%), Gaps = 55/641 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DA++  +  ++   GK+  QI D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDADAQNIHVLVTDAGKTCIQIIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +R      G +
Sbjct: 65  MSETDARLSFERHATSKIREAADLFALRTMGFRGEALASIAAVAQVELKTRLESEELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+ + G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LVIAGSKVESQEAVSCSKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+  +  S  + +          +RI  + G+      + +   +  + + GY   P
Sbjct: 185 EVAFSLYSNDSELFNLPVSP----LRQRILAIFGKKLNQQLLNIEVNTTMVKISGYIAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP+G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMEAYEQLIPVGEQVSYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  S+++++ K     S          I +F Q+  P      
Sbjct: 301 PTKTEIKFENEQAIWQILSASVKESLGKFSAIPSIDFDTEDMPDIPAFEQNLPPAPPKIH 360

Query: 358 YATSLTN------------------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           Y +                        E L+    + S  +    +     E++   EE 
Sbjct: 361 YNSDFNPFKVSSGGSGGGSYSRPKVEWEGLYGGLTKASKMNEPQQEPEMDWENSPFEEEP 420

Query: 400 EATH---------------------------YQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                                           + G    Q    +I++    GL+++DQH
Sbjct: 421 MVAEEKTISAVSAASSTFSSASSTLYANESVIEKGNLHLQFKGRFILTSVKSGLMLIDQH 480

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
            AH R++F++        +  SQ +L PEI+ L   E A++    +DL  +G      G 
Sbjct: 481 RAHIRVLFDRYMVQIKQKQGVSQGVLFPEILQLPASEAAVLQGIMDDLSAVGFDLSDLGG 540

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
            + AI  IP+ +   N  +L+R+++   ++       ++    +  T+A   +I  G+ +
Sbjct: 541 GSYAINGIPSGIEGLNPVELVRNMLHTAMEKGN-DVKEEIQNILALTLARAAAIVYGQVL 599

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            + EM  L+  +   P+ +    G+     +K  DIEKLF 
Sbjct: 600 SNEEMVSLVDSLFACPSPNYTPDGKTVLTTIKEEDIEKLFK 640


>gi|226226936|ref|YP_002761042.1| DNA mismatch repair protein MutL [Gemmatimonas aurantiaca T-27]
 gi|259509934|sp|C1A8L2|MUTL_GEMAT RecName: Full=DNA mismatch repair protein mutL
 gi|226090127|dbj|BAH38572.1| DNA mismatch repair protein MutL [Gemmatimonas aurantiaca T-27]
          Length = 607

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/609 (26%), Positives = 292/609 (47%), Gaps = 21/609 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + +QIAAGE++ERP+  +KEL+EN+LDA ++ V+  I  GG++  +I DNG 
Sbjct: 3   RIAILPSAVADQIAAGEVVERPASVVKELVENALDAGATSVDITIEDGGRTLIRIADNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A+ RH TSKI  ++    + +FGFRGEALP+I +VS L + +   ++ +G 
Sbjct: 63  GMDGADAVLALSRHATSKITSAEQLVGVRSFGFRGEALPAIASVSELQIET-ASEDGSGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +    ++    VA   GT V V  LF   PARL F++S + E   I D ++ + +  
Sbjct: 122 LVRVQAGTLTETGQVARRQGTTVSVHRLFHNTPARLKFMRSARSEWRAIVDAMQAIGVLR 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V FT              ST      R++ + G   +   V++++    + + G    
Sbjct: 182 RDVHFTVRHDGRVALDWPAVST---LRARLAALWGAADVERFVDVDDVQGVVHVSGLAER 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P        +  + +NGR V+D  ++     AY  TIP G  P +VL + +    VDVNV
Sbjct: 239 PADVGTATRRVLLIVNGRVVRDHGLIRAAEAAYRSTIPAGMRPSLVLQVHVPGGDVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMISSFHQD 348
           HPAK+ +RFR+   +   + +++++A+                + +S      +     +
Sbjct: 299 HPAKAEVRFRDRWPLERAVEEAVRRALGLFDASAGIGWRTWSAAPASREPGHALGGIPLE 358

Query: 349 NAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
            +     P       T       L ++ ++T     +DD T +   D +    A   +  
Sbjct: 359 PSALRAAPAPEGLFATPAAADANLAQHAIATATAPTADDLTSAMQVDAMRAEAAREMETL 418

Query: 408 I--ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           +     Q+ + Y++ +  +G+V++DQH+AHER+++E+        +  SQ LL P  + L
Sbjct: 419 VVPPLMQLRKTYLMFEHDEGVVLIDQHSAHERVLYEQFLGVLERGEAPSQRLLFPLTLHL 478

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E      H +   RLG + + FG  ++ ++ +P    + +  + LRD +  +I    
Sbjct: 479 GPQEADAFEAHRDAFVRLGFEIDHFGGTSLLVQAVPMPHPRFDAERCLRDTLAALI-GDR 537

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
             +   + E + AT AC  +I++G +M   EM  L R +      +   HGR T ++L  
Sbjct: 538 GASAAAKHERLAATFACKAAIKAGDQMSPGEMQALYRALAATVLPAHDVHGRSTIVRLSW 597

Query: 586 SDIEKLFGR 594
            ++++ FGR
Sbjct: 598 DELDRRFGR 606


>gi|86142881|ref|ZP_01061303.1| putative DNA mismatch repair protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85830326|gb|EAQ48785.1| putative DNA mismatch repair protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 628

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 156/631 (24%), Positives = 299/631 (47%), Gaps = 50/631 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +S ++ ++   G++  Q+ D+G G
Sbjct: 5   IKLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGASSIKLLVKDAGRTLIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI  +DD   + T GFRGEAL SI AV+H+ L ++P     G Q
Sbjct: 65  MSPTDARLSFERHATSKINAADDLFALSTKGFRGEALASIAAVAHVDLKTKPEDEEVGTQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  I +    A   GT + V++LFF IPAR NFLKS+ VE   + D  +R+A+A+ 
Sbjct: 125 IEIEGSTIKNQEVCAAVKGTSIAVKNLFFNIPARRNFLKSDSVELRHVIDEFQRVALAHE 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT     S  + +       N  +RI  V G       V ++E++  + + G+   P
Sbjct: 185 TIAFTLYHNDSELFNLPKT----NKRQRIVGVFGPKTNEKLVPVSEETEIVNIDGFIIKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F++    + + F+N R ++  ++  ++  A+   +P        + L++DP+ +D+N+H
Sbjct: 241 EFSKKTKGEQFFFVNDRFIKHPYLNHSVSAAFDGLLPDRARASYFIYLKVDPKTIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK--------------------- 339
           P K+ ++F +   I   +  +++ ++ +  I+     ++                     
Sbjct: 301 PTKTEVKFEDEHAIYTLLRAAVKHSLGQFNIAPVLDFNRESNMDTPYAYKNKEAKPPKVE 360

Query: 340 --KMISSFHQDNAPKTH----LPKYATSLTNTQEKLFLQENRLSTN--------DLLPSD 385
             +  + F ++    T      P Y        E L+   +R +          +  P  
Sbjct: 361 VDRHFNPFEEEQKVTTSGFKSAPSYEKKSAAGWENLYAGLDRKTDTSGFSHVEIEQEPET 420

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +  + E                    QIH  YI+S    G++++DQ+ AH+R+++E+  +
Sbjct: 421 ESLFIEHESKGFSESKETENDSANTYQIHSKYIVSAIKSGMMLIDQNRAHQRILYEEFLR 480

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
           +    +  SQ LL P  +D    E  ++ E  + L   G          + +  IPA + 
Sbjct: 481 NITVKESVSQQLLFPLRLDFSASEIEILKELKDSLENTGFALSMPEAGVLEVSGIPASIQ 540

Query: 506 KKNI----PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           +  +     QLL D+  E+ ++  + T     + +  +MA   ++++G K+       L+
Sbjct: 541 ESEVSIVLEQLLSDVEQEVPNAGFSQT-----DVLAKSMAKSMAVKTGEKLDERSREHLV 595

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            ++      +     + TFI L + ++++ F
Sbjct: 596 NKLFACTEPTLSPFLKKTFITLTVEELDRKF 626


>gi|294056556|ref|YP_003550214.1| DNA mismatch repair protein MutL [Coraliomargarita akajimensis DSM
           45221]
 gi|293615889|gb|ADE56044.1| DNA mismatch repair protein MutL [Coraliomargarita akajimensis DSM
           45221]
          Length = 618

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 184/616 (29%), Positives = 303/616 (49%), Gaps = 27/616 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++ NQIAAGE+IERP   +KEL+ENS+DA ++R+E     GGKS+ +I DNG 
Sbjct: 3   SIRILPDRVANQIAAGEVIERPVAVVKELVENSIDAGATRIEVEFRNGGKSYIRIEDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +E  +A++RH TSK+ +  D + I +FGFRGEALPSI +VS  TL +R      G 
Sbjct: 63  GMPPDEALLALERHATSKLREAADLNEIGSFGFRGEALPSIASVSKFTLRTRAEGWEHGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I ++G K+   R   M  GT++EV  LF ++PAR  FLK++  ET  IT   R  A+A+
Sbjct: 123 EITLNGGKLIDKRECGMPVGTVIEVAHLFNSVPARRKFLKTDTTETAHITYTTRLFAVAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SNEITLQGYT 237
           P ++F         +K        +  +RI+++ G+   N+ + ++ +   +   L G T
Sbjct: 183 PGIAFRLIENGRTLFK---SPACNDLRDRIAEIWGKQLANDLIPVDIQDSQHGYRLTGLT 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R    +    +N R V  + +   +  AY   +  GRYP   L LEI  ++VDV
Sbjct: 240 AKPGIGRATRRELVTLVNRRPVDSRTLGFAVLDAYHGRVQKGRYPPAFLFLEIQAQEVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK----- 352
           NVHPAK  +RFR+ + IR FI+ +I + + +   S    L+    +    + +PK     
Sbjct: 300 NVHPAKREVRFRDESAIRRFILSAITQTLQEYSESQGQTLATTAQAPEPIETSPKLSDLP 359

Query: 353 -------------THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
                        T   + +     T       +  L T+    ++ P       PVE  
Sbjct: 360 AVQAKSEQAKPVSTATTRQSPKPALTIPTNEAPKPALETSSPAGANRPIKQPIATPVETP 419

Query: 400 EATHYQLGIA--CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                +       AQ+     + +T  GLV++    A +R+ FE ++ +  ST+  SQ L
Sbjct: 420 SKPVRKQQRWKLIAQMQNQLALFETNRGLVMLHLRHADQRVRFEAIQNESVSTESLSQEL 479

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P  ++L      ++ ++ + L+  G   E FG +   +  IP+ L+ ++    LRD+I
Sbjct: 480 LIPIPLELEPLASEVLQKNLKQLNDCGFSIEAFGRHFYRVEAIPSWLAIEHTEPYLRDLI 539

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D +      + LQ+ +   LA +A   S  +G  +  I + +L  ++    N      G+
Sbjct: 540 DHLRQREGGHKLQNYLLETLAQLAIKDSYHAGDGINQIAIQQLADDLLVCANPHTSPSGK 599

Query: 578 PTFIKLKLSDIEKLFG 593
           PT+ ++  ++  K  G
Sbjct: 600 PTYTEVSWNEWYKRLG 615


>gi|228471768|ref|ZP_04056541.1| DNA mismatch repair protein MutL [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276921|gb|EEK15616.1| DNA mismatch repair protein MutL [Capnocytophaga gingivalis ATCC
           33624]
          Length = 607

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/608 (24%), Positives = 288/608 (47%), Gaps = 26/608 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+ A+KEL+EN++DA++++++ ++   G++  Q+ DNG G
Sbjct: 5   IRLLPDNVANQIAAGEVIQRPASAVKELLENAIDAKATQIKLILKDAGRTLVQVVDNGIG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI   DD  ++ T GFRGEAL SI A++ + + +       G  
Sbjct: 65  MSPTDARLAFERHATSKIRVADDLFSLQTKGFRGEALASIAAIAQVEMTTCQEGEEIGTA 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P     GT + +++LFF +PAR NFLKS+ VE   I D   R+ +A+P
Sbjct: 125 ITIEGNKITDQYPTVTQKGTSIAMKNLFFNVPARRNFLKSDNVELRHILDEFHRVVLAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F+       ++ +   S      +RI QV G       V + EK+  + + G+    
Sbjct: 185 DIQFSLIHNGVEQFNLPPTS----LKKRIVQVFGNRLNEQLVPVEEKTEVVNIHGFISRN 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +F + N +  +  +N R ++++++   + +A+   +  G  P   L LEIDP+ +D+N+H
Sbjct: 241 SF-KRNKSLQFFMVNHRFIKNRYLHHAVLSAFEGLLREGEQPEYFLYLEIDPKHIDINIH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT------- 353
           P K+ I+F N   I   +  +I+ ++ +  +  +   S             K        
Sbjct: 300 PTKTEIKFDNDQTIYALLRSAIKHSLGQFHVLPTIDFSLDESQEVPYSYKDKEAQTPTYQ 359

Query: 354 ---HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-------EATH 403
              +   +     +T    F       +           S  NDP E+        E   
Sbjct: 360 VDRNFNPFKMDNPSTLGGTFSSHRNTPSPQWESLYAGIPSRVNDPFEKEQVVPTLIEHPT 419

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                      + YII+   D ++ +    AH+R+++E+  +        SQ+LL P   
Sbjct: 420 EVKVQTLLYFQKKYIITYLKDKVLFIHVSRAHQRILYERFHKSITQGVSISQSLLFPLEF 479

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +    E   +      L+R+G   E  G N I    +P ++ +  +  +L  ++++ ++ 
Sbjct: 480 EFSPTEIISLQGLIPLLNRVGFLLEIQG-NKICFTGLPPMVKESQVEDILHQLLEKEMED 538

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                L  + E ++  ++   ++++G+ + + E  +L+ ++    +S     G+  + +L
Sbjct: 539 IPQDELSQK-EALVKNLSKSLAVKAGQTLSAEEQEQLVYDLFSCKDSLISPFGKKIYTEL 597

Query: 584 KLSDIEKL 591
             +++E  
Sbjct: 598 SSNELENR 605


>gi|224025966|ref|ZP_03644332.1| hypothetical protein BACCOPRO_02717 [Bacteroides coprophilus DSM
           18228]
 gi|224019202|gb|EEF77200.1| hypothetical protein BACCOPRO_02717 [Bacteroides coprophilus DSM
           18228]
          Length = 638

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 167/655 (25%), Positives = 271/655 (41%), Gaps = 85/655 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  IKEL+EN++DA +  ++  +   GK+  Q+ D+G G
Sbjct: 5   IRLLPDSVANQIAAGEVIQRPASVIKELVENAIDAGAKHIDVSVTDAGKTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI +  D   +HT GFRGEAL SI AV+ + L +       G  
Sbjct: 65  MSETDARLAFERHATSKIREASDLFALHTMGFRGEALASIAAVAQVELRTCQAGEQLGTS 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ISG K+ S   VA   G+   VR+LFF +PAR  FLKS Q E + I     R+A+  P
Sbjct: 125 IIISGSKVESQEAVACPQGSNFIVRNLFFNVPARRKFLKSNQTELSNILAEFERIALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+FT     +    +          +RI  V G+      + L+  +  + + G+ G P
Sbjct: 185 EVTFTLHHNDTEILNLPAI----QLRQRIMGVFGKKLNQELLSLDIDTTMVKIHGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + + F+NGR ++  +    +  AY   IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGARQFFFVNGRYMRHPYFHKAVADAYENLIPAGEQVSYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++ + +     S          I +F          PK
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKETLGRFNAVPSIDFDTEGMPDIPAFEASPYSLVQPPK 360

Query: 358 YATSLT-------------------------------NTQEKLFL-----QENRLSTNDL 381
            +   +                                + E LF      +E       L
Sbjct: 361 TSYDPSYNPFDMSPLPPSSYSSASYTPSSAYAPKKPATSWEPLFHGLEKGREPEGQEGTL 420

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAA 434
            P +            E                    Q   +YI++    GL+I+DQ  A
Sbjct: 421 APEEGYVEDASASMPGEPTLYDALPKESVVEKVAQHYQYKGSYILTSVKSGLMIIDQQRA 480

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
           H R+++++        +  SQ +L P+++     E  ++ E  EDL  LG      G   
Sbjct: 481 HIRILYDQYMAQIEKRQSISQRMLFPDMVHFSPAEVPVLEEIMEDLKALGFDLSSLGGGT 540

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY----------- 543
            AI  IP+ +   N   L+ +++   ++                   C            
Sbjct: 541 YAINGIPSGIEGLNPETLVTNMVQTALEKG-----------------CKVKEEVQSLLAL 583

Query: 544 -----GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
                 +I  G+ + + EMN L+  +      +    G+     LK  D+EKLF 
Sbjct: 584 SLAKAAAIVPGQVLTNEEMNNLVDGLFAVATPNYTPDGKTVLSVLKEEDLEKLFK 638


>gi|256026720|ref|ZP_05440554.1| DNA mismatch repair protein mutL [Fusobacterium sp. D11]
 gi|289764716|ref|ZP_06524094.1| DNA mismatch repair protein mutL [Fusobacterium sp. D11]
 gi|289716271|gb|EFD80283.1| DNA mismatch repair protein mutL [Fusobacterium sp. D11]
          Length = 644

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/659 (28%), Positives = 315/659 (47%), Gaps = 84/659 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 3   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 61

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   +D  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 62  GMSKEDLLLSIERHATSKILTKEDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++    N GT +E++DLF+  PAR  FL+ E  E   I D+  R A+A 
Sbjct: 122 QMNVLGGKVTNLKDTQRNVGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLREALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 182 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  ++FINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 230 ANLFKANRDSIFIFINGRSVKSKIVEEAVINAYHTKLMKGKYPTALIFLEVEPNEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------MISSFHQ 347
           HP+K  ++F N   I + +   I+          S  +  +             I+ F  
Sbjct: 290 HPSKKVVKFANQNAIFDLVKGEIENFFTDDEDFISPYIGAENEVEDNTKNNFLDINDFKD 349

Query: 348 DNAPKTHLP---------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
           D    + L                       +  + T T+  +   E +  + ++   D+
Sbjct: 350 DMQDFSQLSVVKKEDYSKKDYKNIEVEKEKTFGNAGTTTESSINSNEIKEDSKNIENFDN 409

Query: 387 PTYSE----------DNDPVEESEATHYQL---------------------GIACAQIHQ 415
              +           +ND +E+SE   Y                            Q+  
Sbjct: 410 SVKNPISVDKNKVEINNDIIEKSENNKYIFNQEDVSRGKIFDDFSSLKNIDFKVIGQVFD 469

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            +I+ +    L I DQH  HER+++EK++Q++ +  ++ Q LL P   +L   E  L +E
Sbjct: 470 TFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQNLLVPIRFELDPREKQLALE 529

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E     G   + F  N I +R  P +  + +   ++R+I+D I  +      +D  EN
Sbjct: 530 NIEIFSSFGFDIDDFDKNEILLRSTPTMNLRDSYENIIREILDNISKNKD----KDIREN 585

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I+ +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 586 IIVSMSCKGAIKANHKLTLEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 643


>gi|313888302|ref|ZP_07821973.1| DNA mismatch repair protein, C-terminal domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845705|gb|EFR33095.1| DNA mismatch repair protein, C-terminal domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 624

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/627 (28%), Positives = 310/627 (49%), Gaps = 40/627 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E+ I++IAAGEIIE  +  +KEL+ENS+DA +  +   + G    + +++DNG G
Sbjct: 2   IRLLDEQTISKIAAGEIIENSASIVKELVENSIDAGADDILVELRGESTDYIKVSDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            + E++ +A  RH TSK+   +D   I T GFRGEAL SI  +S + LM++   +  G  
Sbjct: 62  FSEEDLELAFLRHSTSKLQVIEDLEKIRTLGFRGEALASISNISKIKLMTKRENDLAGNS 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I   KI     V M  GT   + D+F+  P R  FL+ +  E + I D+++++A++  
Sbjct: 122 LVIENGKIIKKNKVGMPKGTSFIINDVFYNTPVRKKFLRKDSTEISNIIDIVQKIALSNN 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + FT                + +   RI  ++G +  ++  E + +S    ++G+    
Sbjct: 182 NIKFTLIRDGKTILN---TGNDKDPINRIFSILGSEIASSLNEGSFESENYKIRGFFSDN 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N +  Y+F+NGR ++D  I   +   Y   IPL RYPV +L ++IDP+ +DVN+H
Sbjct: 239 KLFRSNRDSQYIFVNGRFIRDINISRAVEKNYNSLIPLNRYPVFILYIDIDPKLIDVNIH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+  N  I+   + + +++ I            +K  +    D   +    +   
Sbjct: 299 PKKNEIKISNENILTALLSEVVEEVIYPNRSIREIEFEEKKENINVFDIFDEDDSEEALD 358

Query: 361 SLTNT------------------QEKLFLQENRLSTNDLLPSDDP----TYSEDNDPVEE 398
           S+  T                  +E    +E  L+   LL  ++      +S D + +E+
Sbjct: 359 SIKITKSEKNNNLKSLWDLEKEIEESDTEKEQALNEEALLYREEYKKDSNFSNDKEHIEK 418

Query: 399 SEATHYQLGI---------ACAQIHQNYIISQTTDG--LVIVDQHAAHERLIFEKMRQDF 447
           +   + +                + + YI+ +      + +VDQHAAHER+ +EK  + +
Sbjct: 419 NFLFNRKASQIDEGLLNTRISGVLFKTYILLENQRDGKVFVVDQHAAHERVNYEKFLKMY 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +++I+SQ L+ PEII+L + E   I+ + +   +LG K E FG  ++ +RE+P I    
Sbjct: 479 LNSEISSQILIKPEIIELNQLEYDKILNYIDLFTKLGFKIEDFGDRSVVLREVPMIFGLP 538

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
                +RDIID + D   +   +  +  I+   AC  S+++G  +  IE+  L+++++  
Sbjct: 539 TYVNFIRDIIDSL-DKEISSNYEADLYKIM-RKACKASVKAGDDLSDIEIEALIKDLKNC 596

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            N   C HGRPT +++    I KLF R
Sbjct: 597 ENPYTCPHGRPTIVEVSKHTISKLFLR 623


>gi|257452675|ref|ZP_05617974.1| DNA mismatch repair protein mutL [Fusobacterium sp. 3_1_5R]
 gi|257466536|ref|ZP_05630847.1| DNA mismatch repair protein mutL [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917691|ref|ZP_07913931.1| DNA mismatch repair protein mutL [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059215|ref|ZP_07923700.1| DNA mismatch repair protein mutL [Fusobacterium sp. 3_1_5R]
 gi|313684891|gb|EFS21726.1| DNA mismatch repair protein mutL [Fusobacterium sp. 3_1_5R]
 gi|313691566|gb|EFS28401.1| DNA mismatch repair protein mutL [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 590

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 173/605 (28%), Positives = 303/605 (50%), Gaps = 30/605 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E + N IAAGE++E P+  +KEL+ENSLDA S  +   I  GG+ F +I D+G 
Sbjct: 3   KIHILEESVSNAIAAGEVVENPASLVKELLENSLDAGSKNIYLFIREGGR-FVEIRDDGM 61

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++V+RH TSKI   +D   + ++GFRGEAL SI +VS +++ S     N G 
Sbjct: 62  GMSREDVLLSVERHATSKIKSKEDLFALQSYGFRGEALSSIASVSKMSITSCEVDANLGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K++ ++      GT + ++DLFF  PARL FL+    E   I D++ + A+A 
Sbjct: 122 KMTVLGGKVTGIKDFPRTQGTDIIIQDLFFNTPARLKFLRKASTEYIQIKDIVLKEALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V              +  S+       I ++ G++ + N  + +         GY G 
Sbjct: 182 PEVKIHLEIDGKE----SICSSGNGLENTILEIFGKNALKNLTKFSY--------GYLGN 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + +  +VF+NGR V+ K I   I  +Y   +  G+YP   + LEI   ++DVNV
Sbjct: 230 EKLYRSSRDSIFVFVNGRPVKAKLIEEAIIDSYYTKLMKGKYPFACVFLEIPASEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  I+F N + + + +  +I++   ++   + +  S K +    ++           
Sbjct: 290 HPSKKIIKFANASEVYSQVRNAIEEVFEEEKEFSFAQFSVKEVEEDREEKKILESFEIAE 349

Query: 360 TSLTNT------QEKLFLQENRLSTNDLLPSDDPTYSEDND----PVEESEATHYQLGIA 409
                       +EK + QE +     L    +       D      EE  +        
Sbjct: 350 NREAKEVFKEIKEEKKYFQEEKTDKIPLFDLQNDKIPVIKDRRSFFEEEKISPKTYDFKI 409

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            AQI+  +++ +      I DQH  HER+++E++++ +    I  Q LL P  + L   E
Sbjct: 410 LAQIYDTFLLVERNGIFEIYDQHIVHERVLYEELKEKYYGNAIQKQQLLVPLKLSLDPRE 469

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             L  E+ E     GI+ E FG N I IR +P++  K ++ +++R+I+ ++         
Sbjct: 470 KELFFENQEQFSFFGIEGEDFGGNEIIIRSVPSVELKASMEEIIREILYQLQHEKE---- 525

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           +D  E+++ +M+C G+I++ +K+   +M  L++++ +      C HGRP  ++L   ++E
Sbjct: 526 RDIRESMIISMSCKGAIKANQKLVLEDMYPLVQKLHEIGE-YTCPHGRPIIMQLPFEELE 584

Query: 590 KLFGR 594
           K F R
Sbjct: 585 KWFKR 589


>gi|237745076|ref|ZP_04575557.1| DNA mismatch repair protein mutL [Fusobacterium sp. 7_1]
 gi|229432305|gb|EEO42517.1| DNA mismatch repair protein mutL [Fusobacterium sp. 7_1]
          Length = 647

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/658 (28%), Positives = 311/658 (47%), Gaps = 83/658 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 7   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 66  GMSKEDLLLSIERHATSKILTKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  R A+A 
Sbjct: 126 QMNVLGGKVTNLKDIQRNVGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLREALAN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 186 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFFKFSL--------GYLGN 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 234 ANLFKANRDSIFVFINGRSVKSKIVEEAVINAYHTKLMKGKYPTALIFLEVEPNEIDVNV 293

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS------------------------ 335
           HP+K  ++F N   I + +   I+          S                         
Sbjct: 294 HPSKKVVKFANQNAIFDLVKGEIENFFIDDEDFISPYIEAENEVEDNTKNNFLDINDFKD 353

Query: 336 -VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN- 393
            +     +S   +++  K            T       ++ +++N++        + DN 
Sbjct: 354 NIQDFSQLSVVKKEDYSKKDYRDIEVEKEKTFGNAGTTKSSINSNEIKEDSKNIENFDNS 413

Query: 394 ----------------DPVEESEATHY---------------------QLGIACAQIHQN 416
                           D +E+SE   Y                            Q+   
Sbjct: 414 VKNSISVDKNKVEINDDIIEKSENNKYIFNQEDVSRGKIFDDFSSLKNIHFKVIGQVFDT 473

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           +I+ +    L I DQH  HER+++EK++Q++ +  ++ Q LL P   +L   E  L +E+
Sbjct: 474 FILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQNLLVPIRFELDPREKQLALEN 533

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E     G   + F  N I +R  P +  + +   ++R+I+D I  +      +D  ENI
Sbjct: 534 IEIFSSFGFDIDDFDKNEILLRSTPTMNLRDSYENIIREILDNISKNKD----KDIRENI 589

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 590 IVSMSCKGAIKANHKLTLEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 646


>gi|242278091|ref|YP_002990220.1| DNA mismatch repair protein MutL [Desulfovibrio salexigens DSM
           2638]
 gi|242120985|gb|ACS78681.1| DNA mismatch repair protein MutL [Desulfovibrio salexigens DSM
           2638]
          Length = 632

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/640 (30%), Positives = 299/640 (46%), Gaps = 62/640 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L   + NQIAAGE++ERPS  +KEL+ENS+DA S++V+  +  GG+ F  + DNG G
Sbjct: 6   IHVLPASLRNQIAAGEVVERPSSVVKELVENSIDAGSTQVDVAVERGGQGFISVKDNGRG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +EE+ +AV RH TSKIS  +D + I +FGFRGEALPSI +VS   + S     + G  
Sbjct: 66  VAAEELKLAVTRHATSKISNVEDLTAITSFGFRGEALPSIASVSRFKMSSCRKGADEGWF 125

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G  +    P A+  GT VEVRDLFF +PARL FLK+E  E      V+ ++A+A  
Sbjct: 126 IHVEGGDVIDEGPAAIPGGTSVEVRDLFFNVPARLKFLKTESTEARRCNQVMFKIALANV 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
              FTF++    ++++       + PER+S     +   + +E + ++ E+ + G  GIP
Sbjct: 186 DAGFTFTSNGREQFRLPA---GQSLPERLSVFWPRNICESLLEFSHEAGEMKVHGCAGIP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +G  ++  +F+NGR VQDK +LS IR AY   +    YP  VL LE+ P  VDVNVH
Sbjct: 243 GLAQGRGDRIVMFVNGRPVQDKLLLSAIRGAYKGRLISREYPQAVLFLELPPELVDVNVH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGI----------------------------- 331
           PAK  +RF+  + + + I   I +A+++  +                             
Sbjct: 303 PAKMEVRFQEESAVFSIIRNGIGQALSRYELGIMDEGVPMQSQPEMPVRPTVREKTLSES 362

Query: 332 STSSVLSKKMISSFHQ----------------DNAPKTHLPKYATSLTNTQEKLFLQENR 375
            +  +      SS+++                   PK+       + +  +  +  ++  
Sbjct: 363 VSLPIEPAAKFSSWNEFKNTDFTALEDEPEVGSALPKSDFISPPVTESRPEPNMVHEQTV 422

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAA 434
                  P   P   E                    Q+   Y++ +  +G L ++DQHAA
Sbjct: 423 DYKAQETPLSVPEPLEYESFAAGPIYVPGSRIEYLGQVADTYLVLKLPNGSLGLLDQHAA 482

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
           HER+I+E M+         S+ L  P  I L   E   + E  EDL   G   E      
Sbjct: 483 HERVIYENMKSLRTRG--ESRPLALPIDIVLHPSEVQRVQEMWEDLLAAGFMLELESGQT 540

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
           +++R IP  L      + L+  +D         TL    +++   ++C  +I++   +  
Sbjct: 541 LSMRGIPPALETGEAREYLKAAVD-----GQAKTL----DDLWIMLSCKSAIKANLPLAV 591

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            E   LL    K P    C HGRP  I     ++EKLF R
Sbjct: 592 NEALSLLEAWVKCPQREYCPHGRPVLISWSALEMEKLFKR 631


>gi|282882043|ref|ZP_06290684.1| DNA mismatch repair protein MutL [Peptoniphilus lacrimalis 315-B]
 gi|281298073|gb|EFA90528.1| DNA mismatch repair protein MutL [Peptoniphilus lacrimalis 315-B]
          Length = 629

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/633 (27%), Positives = 298/633 (47%), Gaps = 44/633 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  I++I+AGEIIE P+  +KEL+ENS+DA +  +   +      F +ITD+G
Sbjct: 1   MSIVLLDDNTISKISAGEIIENPASVVKELLENSIDAGAKNITVEVKNSPTDFIRITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G  ++EI +A  RH TSK+S  +D   + T GFRGEAL SI +++ + L+++  ++  G
Sbjct: 61  CGFKADEIELAFMRHSTSKLSKIEDLEELTTLGFRGEALASISSIAKIRLLTKNSEDLAG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               I   KI     V M  G+   V D+F+  P R  FL+++ VE NLI DVI+++A+ 
Sbjct: 121 TSSKIENGKIIEQSNVGMPHGSTFYVEDIFYNTPVRKKFLRADNVEFNLIFDVIQKIALG 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P+VS ++         +     N N+   I  V+G +   N +E +  S    ++ Y  
Sbjct: 181 NPQVSISYIRDGK---TLLNSYKNSNYKNHILNVLGREIATNLIENSFSSENYKIRAYFS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R + N  Y++INGR V ++ I   I   Y   IPL R+PV +L ++I+   +DVN
Sbjct: 238 NNKLFRSSRNHQYIYINGRYVTNREISREIEKVYKSLIPLNRFPVFILFIDINSSLIDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN------------KKGISTSSVLSKKMISSFH 346
           +HP K  ++  N   +   + + +++ +             K  ++   +   K   +  
Sbjct: 298 IHPKKHEVKLSNENNLIAILCEMVEEVLYPNRSIREIEDEPKVNLNVFDIFDDKSNDNLI 357

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
               P            +   + F +  +    +    D+    ++ +   E        
Sbjct: 358 NFREPTYEPGDNDIKEFDIDSQSFYENYQPFDMNKENLDNNNDIDNIEDKTEDFNYDNIP 417

Query: 407 G-----------------------IACAQIHQNYIISQTTDG--LVIVDQHAAHERLIFE 441
                                        +   +II +  D   + +VDQHAAHER+++E
Sbjct: 418 SLEQFQEDSFLNDKEVIDSNLINTRIVGILFDTFIILENKDKDLIYLVDQHAAHERVMYE 477

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           K ++ + ++ I SQ LL PEII+L   E   I ++ +    LG   + FG N+I +RE+P
Sbjct: 478 KYKKQYLNSNINSQVLLKPEIIELNASEYMKIEKNFKLFKDLGFSIDSFGENSIILREVP 537

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
            I         +RDIID + D   +    D +  ++   AC  ++++G  + ++E+  L+
Sbjct: 538 MIFGFPTYVSFIRDIIDSLDDKIYSNYQAD-MWKVMK-RACLKAVKAGDTLSNMEVKELI 595

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +    N   C HGRPT I +K + I KLF R
Sbjct: 596 NSLIHCENPYTCPHGRPTIIDIKKTTIAKLFLR 628


>gi|218128456|ref|ZP_03457260.1| hypothetical protein BACEGG_00024 [Bacteroides eggerthii DSM 20697]
 gi|317475718|ref|ZP_07934977.1| DNA mismatch repair protein MutL [Bacteroides eggerthii 1_2_48FAA]
 gi|217989347|gb|EEC55660.1| hypothetical protein BACEGG_00024 [Bacteroides eggerthii DSM 20697]
 gi|316908101|gb|EFV29796.1| DNA mismatch repair protein MutL [Bacteroides eggerthii 1_2_48FAA]
          Length = 629

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/628 (26%), Positives = 289/628 (46%), Gaps = 43/628 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAGEIHVLVTDAGKTGIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREASDLFALRTMGFRGEALASIAAVAEVELKTRPAGEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+   G+   V++LFF +PAR  FLK+   E + I     R+A+ +P
Sbjct: 125 LLIAGSKVESQEAVSCPKGSNFSVKNLFFNVPARRKFLKANSTELSNILAEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F   +  +  + +          +RI  V G+      + ++  +  I + G+   P
Sbjct: 185 DVAFYLYSNDTELFNLPVMP----LRQRILAVFGKKLNQQLLSVDVDTTMIKVSGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETSRKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     S          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKESLGKFNAVPSIDFDTEGMPDIPTFEQSRPIEPPKVH 360

Query: 358 YATSLTNTQ------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES------------ 399
           Y       +              +    + L S     S+ N+P  E             
Sbjct: 361 YNADFNPFKTSSASSYGGGSYSRQSVEWEGLYSGLEKASKMNEPAAEEPLDFETTVSDVT 420

Query: 400 ---------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                          E++  + G    Q    +I++    GL+++DQH AH R++F++  
Sbjct: 421 EPASELSQSPSLYSGESSSMEKGAQHLQFKGRFILTSVKSGLMLIDQHRAHVRVLFDRYM 480

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
                 +  SQ +L PEI+ L   E A++    +DL  +G      G  + AI  IP+ +
Sbjct: 481 NQIRQKQGVSQGVLFPEIVQLPASEAAVLESLSDDLAAVGFDLSPLGGGSYAINGIPSGI 540

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              N  +L+R+++   ++   +   ++    +  T+A   +I  G+ + + EM+ L+  +
Sbjct: 541 EGLNPVELVRNMVHTAMEKG-SDVKEEVRTILALTLARAAAIVYGQVLSNDEMSNLVDSL 599

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
                 +    GR     +K  DIEKLF
Sbjct: 600 FACATPNYTPDGRTVLSTIKEEDIEKLF 627


>gi|325281465|ref|YP_004254007.1| DNA mismatch repair protein mutL [Odoribacter splanchnicus DSM
           20712]
 gi|324313274|gb|ADY33827.1| DNA mismatch repair protein mutL [Odoribacter splanchnicus DSM
           20712]
          Length = 617

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 172/622 (27%), Positives = 301/622 (48%), Gaps = 34/622 (5%)

Query: 1   MKI-RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M I   L + + NQIAAGE+++RP+  +KEL+EN++DA +  ++ V+   GK+  Q+ D+
Sbjct: 1   MDIVHLLPDSVANQIAAGEVVQRPASVVKELMENAIDAGAKHIQVVLKNVGKAIIQVIDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM++ +  MA +RH TSKI+   D  +I+T GFRGEALPSI +VS + L +R  ++  
Sbjct: 61  GKGMSNMDARMAFERHATSKIASAQDLFSINTLGFRGEALPSIASVSEVELKTRQEEDEL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G  I I+  ++ +   V+   GT + VR+LF+ IPAR  FLKS+  E   IT+   R+A+
Sbjct: 121 GTSIFIAASELKNQESVSCPKGTNISVRNLFYNIPARRKFLKSDTTELRNITNEFLRVAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P++SF  S   +  Y ++         +RI  + G+   +  + ++  +  + ++G+ 
Sbjct: 181 TNPEISFCLSNNGNVIYNLSP----SGLRQRIVNIFGKSINSRLINIDCATGLVDIKGFI 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R    + Y F+N R ++  F    +  AY+  I +   P   +   +DP  +D+
Sbjct: 237 CSPEQARKTYGEQYFFVNNRFMKHPFFHKAVTEAYSGLIGVDCIPSYFIYFTVDPSLIDI 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK-MISSFHQDNAPKTHLP 356
           N+HP K+ I+F+N T     ++  I++A+ K  I+          I     +     ++P
Sbjct: 297 NIHPTKTEIKFQNETDFFQILLAGIKEALGKFNITPPLDFDTAGSIELIPTEKPAAPYVP 356

Query: 357 K-----------YATSLTNTQEKLFLQENRLSTN--------------DLLPSDDPTYSE 391
           +           Y++S  N Q+  F   +R +++              D L   + +   
Sbjct: 357 RINYNPNYNPFNYSSSKLNPQDSDFEHPSRTASSFHQEKAPANWDILFDGLKEKEESIQT 416

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
               + E+            Q+   YI++    GL+++DQ  AHER++FEK     N+ K
Sbjct: 417 SIPEMTENINPVVPHTNCYFQLKGRYIVTPVQSGLMLIDQKRAHERILFEKYMTTLNTQK 476

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           +T Q  L PEI++L  G+  L+ E   DL  LG +   FG N  AI   P  LS     +
Sbjct: 477 VTGQKSLFPEILELSAGDFMLVGEILADLEYLGFELNVFGKNGYAIHATPPDLSYTRAKE 536

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           +L ++I+   ++  +   + +   +LA +A   +I     +   EMN +   +    + +
Sbjct: 537 VLIELIEHYKNTEGSIREKMKERVVLA-LAKASAISYNTALSCEEMNEMTGNLFACKHHN 595

Query: 572 QCNHGRPTFIKLKLSDIEKLFG 593
               G+     L   D+   F 
Sbjct: 596 FTADGKTIIHILNYEDVNSWFK 617


>gi|19703797|ref|NP_603359.1| DNA mismatch repair protein mutL [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713943|gb|AAL94658.1| DNA mismatch repair protein mutL [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 643

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 185/652 (28%), Positives = 310/652 (47%), Gaps = 77/652 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG+    I+D+G 
Sbjct: 9   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGRD-ISISDSGC 67

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   +D  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 68  GMSKEDLLLSIERHATSKIFTKEDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  R A+A 
Sbjct: 128 QMNVLGGKVTNLKDIQKNVGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLREALAN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 188 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 235

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 236 ANLFKANRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 295

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------MISSFHQ 347
           HP+K  ++F N   I + I   I+          S  +  +             I+ F  
Sbjct: 296 HPSKKVVKFANQNAIFDLIKGEIENFFTDDEDFISPYIEAENEVEENTKNNFLDINDFKD 355

Query: 348 DNA---------PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           D            + +  K   ++   +E       +++T     +   +    N+  E+
Sbjct: 356 DMQDFLQLSVVGKEVYSKKDYNNIKVEKESFTDINKKINTFGSAGTTTESIINLNEIKED 415

Query: 399 SEATHYQ------------------------------------LGIACAQIHQNYIISQT 422
           S+                                               Q+   +I+ + 
Sbjct: 416 SKNIENFDNSREINDKVKDKYIFNQEDTGRGKIFDDFTSLKNIDFKVIGQVFDTFILVER 475

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
              L I DQH  HER+++EK++Q++ +  ++ Q LL P   +L   E  L +E+ E    
Sbjct: 476 NGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQNLLVPIRFELDPREKQLALENIEIFSS 535

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
            G   + F  N I +R IP +  + +   + R+I+D I  +       D  ENI+ +M+C
Sbjct: 536 FGFDIDDFDKNEILLRSIPTMNLRDSYENIFREILDNISKNKDV----DIRENIIVSMSC 591

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 592 KGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 642


>gi|300769727|ref|ZP_07079610.1| DNA mismatch repair protein MutL [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492770|gb|EFK27955.1| DNA mismatch repair protein MutL [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 680

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 178/673 (26%), Positives = 291/673 (43%), Gaps = 86/673 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS  + +QIAAGE++ERP+  +KEL+EN++DA +++V+ ++   G    ++ D+G 
Sbjct: 5   KIHELSSVLADQIAAGEVVERPASVVKELVENAVDAHATQVDILVQESGVQSIRVIDDGD 64

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+  A +RH TSKI   +D   +H+ GFRGEALPSI +V+ + + +      TG 
Sbjct: 65  GIDDAEVLTAFKRHATSKITSREDLFRVHSLGFRGEALPSIASVADVVMNTST--GATGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I   G K+    P  +  GT + V DLFF  PARL +LKS Q E   I DV+ R+A++Y
Sbjct: 123 SIHYRGGKLLQQSPAPLRQGTDITVTDLFFNTPARLKYLKSPQTELANILDVVNRIALSY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F          ++   +  G+  + I+ + G       V +   + +  L G+  +
Sbjct: 183 PAVAFRLVHNAK---ELLKTAGRGDLQQVIAGIYGVQNARKMVAIQGSTTDFKLSGFVAL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     V INGR ++++ +   +   Y   + +GRYP+ V+ L +DP  VDVNV
Sbjct: 240 PELTRASRQYITVLINGRAIKNQQLTKAVIKGYGSKLMVGRYPIAVIALTMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP K  +R      +   +  +I   +    +  S++ +                     
Sbjct: 300 HPTKQEVRLSKEPELAKLVSTTITDRLVDVNLIPSALTNLGSHRREHLNTDQLAMDLNAV 359

Query: 339 -----------KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                            F    A  T  P  AT++ +T        NR + + ++PS+  
Sbjct: 360 SSQYQVADKTTPASTEQFAASLAAATMQPSSATTMVSTTSAQPSAVNRAAVSAVVPSESA 419

Query: 388 TYSEDNDP-------------------------------------------VEESEATHY 404
             S +                                                 SEA   
Sbjct: 420 ASSANPPIMISHRDELTATPVQAFDQRYQSESGALPFGETAEPLETSTAASAPTSEAPDT 479

Query: 405 QLGIACAQIHQN---YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
           +       + Q    Y++++  DG+ I+DQHAA ER+ +E  RQ         Q LL P 
Sbjct: 480 ERFPQLRYLGQMHGTYLLAEADDGMYILDQHAAQERINYEYYRQAIGEVSADQQNLLVPI 539

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I+D    +   I E    L  LGI  E FG N+  +   P           +R++ID ++
Sbjct: 540 ILDYPTSDVLKIKEKLPLLAELGIHLESFGGNSFIVHAHPTWFKAGQEEDTIREMIDWLL 599

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
                 T+    E     M+C  +I++   +   +   LL ++    N   C HGRP  +
Sbjct: 600 QDDK-LTVAQFREKSAIMMSCKRAIKANHHLDDQQARALLAKLPTCENPFNCPHGRPVTV 658

Query: 582 KLKLSDIEKLFGR 594
               SD+E++F R
Sbjct: 659 HFTNSDMERMFKR 671


>gi|296328455|ref|ZP_06870976.1| DNA mismatch repair protein MutL [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154421|gb|EFG95218.1| DNA mismatch repair protein MutL [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 637

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/652 (28%), Positives = 310/652 (47%), Gaps = 77/652 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG+    I+D+G 
Sbjct: 3   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGRD-ISISDSGC 61

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   +D  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 62  GMSKEDLLLSIERHATSKIFTKEDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  R A+A 
Sbjct: 122 QMNVLGGKVTNLKDIQKNIGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLREALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 182 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 230 ANLFKANRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------MISSFHQ 347
           HP+K  ++F N   I + I   I+          S  +  +             I+ F  
Sbjct: 290 HPSKKVVKFANQNAIFDLIKGEIENFFTDDEDFISPYIEAENEVEENTKNNFLDINDFKD 349

Query: 348 DNAPKTHLP---------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           D    + L          K   ++   +E       +++T     +   +    N+  E+
Sbjct: 350 DMQDFSQLSVVGKEVYSKKDYNNIKVEKESFTDINKKINTFGSAGTTTESIINLNEIKED 409

Query: 399 SEATHYQ------------------------------------LGIACAQIHQNYIISQT 422
           S+                                               Q+   +I+ + 
Sbjct: 410 SKNIENFDNSREINDKVKDKYIFNQEDTGRGKIFDDFTSLKNIDFKVIGQVFDTFILVER 469

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
              L I DQH  HER+++EK++Q++ +  ++ Q LL P   +L   E  L +E+ E    
Sbjct: 470 NGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQNLLVPIRFELDPREKQLALENIEIFSS 529

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
            G   + F  N I +R IP +  + +   + R+I+D I  +       D  ENI+ +M+C
Sbjct: 530 FGFDIDDFDKNEILLRSIPTMNLRDSYENIFREILDNISKNKDV----DIRENIIVSMSC 585

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 586 KGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 636


>gi|150017423|ref|YP_001309677.1| DNA mismatch repair protein [Clostridium beijerinckii NCIMB 8052]
 gi|189030395|sp|A6LWJ1|MUTL_CLOB8 RecName: Full=DNA mismatch repair protein mutL
 gi|149903888|gb|ABR34721.1| DNA mismatch repair protein MutL [Clostridium beijerinckii NCIMB
           8052]
          Length = 664

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 187/664 (28%), Positives = 308/664 (46%), Gaps = 75/664 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+E   N+IAAGE++ERP+  +KELIENS+DA +  +   I  GG S  +I D+G 
Sbjct: 3   RINILNEDTANKIAAGEVVERPASVVKELIENSIDANAKNIIIEIEEGGISLIRIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I  A   H TSKI  S+D  NIHT GFRGEALPSI +V  + L S+  +   G 
Sbjct: 63  GIYKDDIAKAFLPHATSKIQESEDIYNIHTLGFRGEALPSIASVGKVNLKSKQDEEAFGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I+I G K S V    +N GTI+EV+DLFF +PAR  FLKS   E++LI D++ R+++A 
Sbjct: 123 EISIEGGKASEVTECGINKGTILEVQDLFFNVPARKKFLKSVSKESSLINDIVTRLSLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK+SF          K+     NG+  + I  + G+   +N +  ++ S+ IT+ GY G 
Sbjct: 183 PKISFKLYNNHK---KVLHTFGNGDLKDVIRTIYGKSITDNILYFSDSSDLITVYGYVGT 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               RG+ N   +F+N R ++++ +   +  A+     + ++P  +L +E+ P  VDVN+
Sbjct: 240 EEIARGSRNNQSIFVNRRYIKNRALAIAVEQAFKSFSTVNKFPFFILFIEVYPEYVDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-----KKGISTSSVLSKKMISSFHQ------- 347
           HP K+ I+F +  +I   I  ++  A+         I       K+ + +F +       
Sbjct: 300 HPTKAEIKFNDERMIFKKIFGAVHTALKNEVFETFAIKEEENTKKEPLPTFEEITFKIKE 359

Query: 348 -----------------------DNAPKTHLPKYATSLTN------TQEKLFLQENRLS- 377
                                   N   +    Y  SL N       +   + +EN    
Sbjct: 360 EEEKVKFASSAAKTLISQGKDLKANNESSFKSVYDPSLNNINKTIVEESTDYNKENEEPI 419

Query: 378 ---------------TNDLLPSDDPTYSEDNDPVEE---SEATHYQLGIACAQIHQNYII 419
                           +D   + +     +++P+E                A+     II
Sbjct: 420 SIPVDLKPNSYIENLVDDYSDNAEDEIKSNSEPIENVITENKYENIKPNPIAKFPPITII 479

Query: 420 SQTTDGLVIVDQ----HAAHERLIFEKMRQDFNSTKIT-----SQTLLTPEIIDLLEGEC 470
            Q     ++ +     +   +    EK+  +    +I       Q L+ P IIDL   + 
Sbjct: 480 GQYNKTYILGEYDGTLYMIDQHAAHEKILFEKYLKEIEEGTIIIQPLIVPSIIDLSIDDY 539

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           +   E+ +     G   E FG ++++++E+P  L + N   L  DI+D + +     T +
Sbjct: 540 SYFEENKDIFREAGFLLEEFGGSSLSLKEVPYFLGRLNPKNLFLDILDNLKNLGNGKTSE 599

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            +   I AT AC  +I+   K++  EM +L+ ++    +   C HGRP  IK    DI+K
Sbjct: 600 VKHNAI-ATKACKAAIKGNDKLEMNEMIKLIEDLRYIDDPFHCPHGRPVIIKFTSIDIDK 658

Query: 591 LFGR 594
            F R
Sbjct: 659 KFKR 662


>gi|291543952|emb|CBL17061.1| DNA mismatch repair protein MutL [Ruminococcus sp. 18P13]
          Length = 657

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 182/662 (27%), Positives = 296/662 (44%), Gaps = 74/662 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +++   IAAGE+IERP+  IKEL+ENS+DA +SR+   I  GG  + +ITD+G
Sbjct: 1   MSITVLPKELSELIAAGEVIERPASVIKELVENSIDAGASRITVEIRNGGSVYMRITDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+P A  RH TSKI +  D  NIHT GFRGEAL S+ AV  + ++++      G
Sbjct: 61  CGIAPEEVPTAFLRHATSKILEKADLDNIHTLGFRGEALASVAAVGRVEMLTKQAGAEYG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  I G     +       GT + +RDLFF +PAR  FLK +  E+N ++ +++++A++
Sbjct: 121 VRYQIEGGTECGMERTGCPEGTTIVIRDLFFNVPARQKFLKKDVTESNAVSAIVQKIALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+++FT        +     + +G     I  V G  F  + + ++   N I+L+GY  
Sbjct: 181 HPEIAFTLIRDHRREFH---AAGDGTLYSAIYAVYGRSFAQDLLPVSYSENGISLEGYVI 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P + + N +    FINGR V+       +  AY   +  G++P  VL+L + P  VDVN
Sbjct: 238 KPLYAKNNRSLQTFFINGRYVKSVTCSVALEEAYRTLVMTGKFPACVLMLTVPPETVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQS---------------------IQKAINKKGISTSSVL 337
           VHPAK+ +RF +   + + +                         Q A  ++    +   
Sbjct: 298 VHPAKAAVRFTDEKRVSSAVFFGVKNALMQNGLIYEFQMRPTADWQHAPKEQEPGFADAP 357

Query: 338 SKKMISSFHQDNAPKTHLPKYATSL--------------------TNTQEKLFLQENRLS 377
              +        A    +P +  +                        +E L++   +L 
Sbjct: 358 LPPVPPLESVQPAKPAPMPAHQEAPVPVAAVKPMPVGNVQVTVHAPEPEEALYMHSPKLE 417

Query: 378 TN-------------------------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
                                      DLL        E+                   +
Sbjct: 418 YGAAPAAPEPIREPEPLPETSTVFAGFDLLQDTAAAKQEEPVQAPVPAPEEQPKIRVIGE 477

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
              NYI++Q  D L I+D+HAAHER++FE+ R    S    SQ +L    + L   E   
Sbjct: 478 AFTNYILAQAGDSLYIIDKHAAHERVLFEQFRD--ASRTPDSQMILNSSELLLSVAEFDA 535

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +  + E L + G   +   P  +A+  +P + +  N+ +L+ ++ + ++          +
Sbjct: 536 LQANQEALKQRGFAFDFSNPPYVAVCAVPVVCASLNLDELVLELAENLV-LGKQDLASTQ 594

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           +E+ L TMAC  +IR+G K    E+  L  E+  N     C HGRP   +L   +IEK F
Sbjct: 595 LEDALHTMACKAAIRAGDKNDLSELQALAEEVFGNERIRHCPHGRPVLFELTRHEIEKQF 654

Query: 593 GR 594
            R
Sbjct: 655 KR 656


>gi|329962617|ref|ZP_08300565.1| DNA mismatch repair protein [Bacteroides fluxus YIT 12057]
 gi|328529648|gb|EGF56546.1| DNA mismatch repair protein [Bacteroides fluxus YIT 12057]
          Length = 640

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/644 (25%), Positives = 286/644 (44%), Gaps = 64/644 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQEIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIREATDLFALRTMGFRGEALASIAAVAEVELKTRPANEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+   G+   V++LFF +PAR  FLK+   E + I +   R+A+ +P
Sbjct: 125 LLIAGSKVESQEAVSCPKGSNFSVKNLFFNVPARRKFLKANSTELSNILNEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F   +  +  + +          +RI  V G+      + +   +  + + G+   P
Sbjct: 185 EVAFYLYSNDTELFNLPVMP----LRQRIMAVFGKKLNQQLLSVEVNTTMVKVTGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + +P+G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLVPVGEQVSYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++ + +     +          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKETLGRFNAVPTIDFDTEDMPDIPAFEQTRPIEPPKVH 360

Query: 358 YATSLTN--------------------TQEKLFLQENRLST------NDLLPSDDPTYSE 391
           Y T                          E L+    + S        +    +  T S+
Sbjct: 361 YNTDFNPFKTSSASSYGGGGSYSRPKVEWEGLYSGVEKASKLNGPMEEEPPIEEAWTISD 420

Query: 392 DNDPVEES------------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
            +  V +                        ++G    Q    +I++    GL+++DQH 
Sbjct: 421 TSQEVADEGREPYLEEAGRATASLYGNEPVMEMGAQHLQFKGRFILTSVKSGLMLIDQHR 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AH R++F++        +  SQ +L PEI+ L   E A++    +DL  +G      G  
Sbjct: 481 AHIRVLFDRYISQIRQKQGVSQGVLFPEIVQLPASEAAVLESILDDLAAVGFDLSPLGGG 540

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT-----YTLQDRIENILATMACYGSIRS 548
           + AI  IP+ +   N   L+R+++   ++          T+        A       I  
Sbjct: 541 SYAINGIPSGIEGLNPVDLIRNMVHTAMEKGNDVKEEIQTILALTLARAAA------IVY 594

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           G+ + + EM+ L+  +   P+ +    GR     +K  DIEKLF
Sbjct: 595 GQVLSNDEMSSLVDNLFACPSPNYTPDGRTVLTTIKEEDIEKLF 638


>gi|294783899|ref|ZP_06749221.1| DNA mismatch repair protein MutL [Fusobacterium sp. 1_1_41FAA]
 gi|294479711|gb|EFG27490.1| DNA mismatch repair protein MutL [Fusobacterium sp. 1_1_41FAA]
          Length = 646

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 182/656 (27%), Positives = 315/656 (48%), Gaps = 81/656 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 8   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI+  DD  NI T+GFRGEAL SI +VS + L SR   +  G 
Sbjct: 67  GMSKEDLLLSIERHATSKITTKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDSPNGT 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ +  E   I D+  R A+A 
Sbjct: 127 QMNVLGGKVTNLKDIQKNVGTQIEIKDLFYNTPARKKFLRKDTTEYLNIKDIFLREALAN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       +    ++       I ++ G++++ N  + +         GY G 
Sbjct: 187 PNVKFILNIEGKESIR----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 234

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ L+IDP ++DVNV
Sbjct: 235 ANLFKANKDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPSALIFLDIDPAEIDVNV 294

Query: 300 HPAKSYIRFRNPTIIRNFIIQSI------------------------------------- 322
           HP+K  ++F N + I + +   I                                     
Sbjct: 295 HPSKKIVKFANQSKIYDLVKGEIEKFFSDDENFISPHIEVEDEEVETFEEKEEKLEYSNN 354

Query: 323 -----------QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK--- 368
                      ++++++  +       KK  S    +    +H+     + +N  ++   
Sbjct: 355 NFLDINDFKDEKESLSQLSVVQKEDYLKKDYSEIKVEKPNISHIENTVKTSSNEIKENIE 414

Query: 369 ----------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                     L  +E            D   +      ++  +          Q+  ++I
Sbjct: 415 TFKKVDNDFDLIEKEVGTEKTKDKYIFDTKDTSRGKIFDDFSSLKNIDFRVIGQVFDSFI 474

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +  + L I DQH  HER+++EK++Q++ S  +T Q LL P   +L   E  L +E+ E
Sbjct: 475 LVERNNLLEIYDQHIIHERILYEKLKQEYYSHSMTKQNLLVPIRFELDPREKQLALENTE 534

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
                G   + F  N I +R  P +  + +   ++++I+D I  +      +D  ENI+ 
Sbjct: 535 IFSSFGFDIDDFEKNEILLRTTPTMDLRDSYENIIKEILDNISKNKD----KDIRENIIV 590

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 591 SMSCKGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 645


>gi|237739097|ref|ZP_04569578.1| DNA mismatch repair protein mutL [Fusobacterium sp. 2_1_31]
 gi|229423697|gb|EEO38744.1| DNA mismatch repair protein mutL [Fusobacterium sp. 2_1_31]
          Length = 669

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/656 (27%), Positives = 316/656 (48%), Gaps = 81/656 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 31  RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ICISDSGC 89

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR   ++ G 
Sbjct: 90  GMSKEDLLLSIERHATSKIITKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDSSNGT 149

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ +  E   I D+  R A+A 
Sbjct: 150 QMNVLGGKVTNLKDIQKNVGTQIEIKDLFYNTPARKKFLRKDTTEYLNIKDIFLREALAN 209

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       +    ++       I ++ G++++ N  + +         GY G 
Sbjct: 210 PNVKFILNIEGKESIR----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 257

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ L+IDP ++DVNV
Sbjct: 258 ANLFKANKDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPSALIFLDIDPAEIDVNV 317

Query: 300 HPAKSYIRFRNPTIIRNFIIQSI------------------------------------- 322
           HP+K  ++F N + I + +   I                                     
Sbjct: 318 HPSKKIVKFANQSEIYDLVKGEIERFFSDDENFISPHIEVEDEEVETFEEKEEKIEYPSN 377

Query: 323 -----------QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK--- 368
                      ++++++  +       KK  S    +    +H+     + +N  ++   
Sbjct: 378 NFLDINDFKDEKESLSQLSVVQKEDYLKKDYSEIKVEKPNISHIENTVKASSNEIKENIE 437

Query: 369 ----------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                     L  +E      +     D   +      ++  +          Q+  ++I
Sbjct: 438 TFKKVDNDFDLIEKEVETERTNEKYIFDTKDTSRGKIFDDFSSLKNIDFRVIGQVFDSFI 497

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +  + L I DQH  HER+++EK++Q++ +  +T Q LL P   +L   E  L +E+ E
Sbjct: 498 LVERNNLLEIYDQHIIHERILYEKLKQEYYNQSMTKQNLLVPIRFELDPREKQLALENTE 557

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
                G   + F  N I +R  P +  + +   ++++I+D I  +      +D  ENI+ 
Sbjct: 558 IFSSFGFDIDDFEKNEILLRTTPTMDLRDSYENIIKEILDNISKNKD----KDIRENIIV 613

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 614 SMSCKGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 668


>gi|330886597|gb|EGH20258.1| DNA mismatch repair protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 566

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/544 (33%), Positives = 287/544 (52%), Gaps = 32/544 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q    G  +   V+P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QGETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    + +   R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTSRARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S    +  +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAVEPRPTGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------- 393
             +      L + Q + F +               T    +                   
Sbjct: 382 GEMRLANNVLEHPQGEPFARPAAGGGAGSGYQYQYTPRPTSGVPVAEAQSAYREFFAPLP 441

Query: 394 ----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                 + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 442 STAPSSLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 501

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE + + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 502 EGLSGQPLLVPESLAVSQREADCAEEHIATFQRLGFELQRLGPETLAIRQIPALLKQAEA 561

Query: 510 PQLL 513
            +L+
Sbjct: 562 NRLV 565


>gi|320353032|ref|YP_004194371.1| DNA mismatch repair protein MutL [Desulfobulbus propionicus DSM
           2032]
 gi|320121534|gb|ADW17080.1| DNA mismatch repair protein MutL [Desulfobulbus propionicus DSM
           2032]
          Length = 612

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/610 (31%), Positives = 310/610 (50%), Gaps = 20/610 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LSE++ NQIAAGE++ERP+  IKEL+ENSLDA + R++  + G G +  ++ D+G 
Sbjct: 3   RIRILSEQLANQIAAGEVVERPASVIKELVENSLDASAGRIDIHVEGSGGTLLRVADDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++ + ++RH TSKI ++   + I T GFRGEA+PSI +VS +T++SRP     G 
Sbjct: 63  GMDGDDVLLCLERHATSKIREEGQLAAISTLGFRGEAIPSIASVSWMTILSRPQTQELGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I    +  V       GT++EVR LF  +PAR  FLKS + E + I +V+R  A+A+
Sbjct: 123 RAEIRYGTLRDVHQAGCGRGTVIEVRHLFGNMPARKKFLKSARTEMHHIEEVVRNQALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGYT 237
           P+V FT         +    S   +   R+ +V    E  +  AV   ++ + + L+GY 
Sbjct: 183 PQVGFTLHVDGRVALEY---SPGADLQRRVREVFRYRETLLPLAVAAEDEGDGMMLEGYL 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   +    +  + +N R VQD  I   +       +  G  P   LLL + P QVDV
Sbjct: 240 LLPEAAQATNARLRILVNDRPVQDAMIRHAVVEGLQGFLMKGFQPAGALLLTVSPDQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLP 356
           NVHPAK  IRFR    +  FI+  +  A+     S    L     SS           L 
Sbjct: 300 NVHPAKREIRFRRSEAVHRFIVDRVAAAMCGYQQSQRHSLFAPPSSSSRAWPVDSGEALR 359

Query: 357 KYATSLTNTQEKLFLQEN---------RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
               ++T T  +   Q+                   +  P+ +     V    A      
Sbjct: 360 SVPPAMTMTTAEPVEQQPLPAMDRYGRSTPAMAAPLAAPPSPASPFAVVPSPPAGGAAGL 419

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
               Q+   Y++ +    LV++DQHAAHERL++ ++RQ +   +I  QTLL P  ++L  
Sbjct: 420 TLIGQLFSLYLLCEREGQLVVIDQHAAHERLLYGQLRQGYQEAQIPRQTLLFPVTVELTP 479

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID---SS 524
            +   + +  E +  LG++AE FG   + I+ +PA++S      LLR+++D +      +
Sbjct: 480 AQAETLEQKSEAVAALGLQAEPFGEATVVIKAMPALVSHVEPGGLLREVLDGLRGPLPVA 539

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
              T+   ++++LA+MAC  +I++G ++Q  EM +LL +ME +   + C HGRP      
Sbjct: 540 ADRTVPQAVDDLLASMACKAAIKAGNRLQPAEMLKLLHQMETSEVFTHCPHGRPVVKTFS 599

Query: 585 LSDIEKLFGR 594
             ++E+ F R
Sbjct: 600 SQEVERWFHR 609


>gi|183221533|ref|YP_001839529.1| DNA mismatch repair protein MutL [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911614|ref|YP_001963169.1| DNA mismatch repair protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|238687783|sp|B0SB85|MUTL_LEPBA RecName: Full=DNA mismatch repair protein mutL
 gi|238687854|sp|B0ST13|MUTL_LEPBP RecName: Full=DNA mismatch repair protein mutL
 gi|167776290|gb|ABZ94591.1| DNA mismatch repair enzyme (predicted ATPase) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779955|gb|ABZ98253.1| DNA mismatch repair protein MutL [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 614

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/616 (27%), Positives = 288/616 (46%), Gaps = 30/616 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS  +INQIAAGE+IE     +KELIENS+DA +S++E      G     ++D+G G
Sbjct: 4   IHSLSPDLINQIAAGEVIESTHSILKELIENSIDAGASKIEIATESAGLGRILVSDDGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T E++P+A++R+ TSKI    D  ++ TFGFRGEAL SI +VS L + S    N    +
Sbjct: 64  ITKEDLPLAIKRYATSKIQTFHDLEHLFTFGFRGEALASIASVSRLVIESGTEGNRMAQR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +   K+ S   +    GT +E++DLF+  P R  FLK+E  E       ++ MA+  P
Sbjct: 124 VVVEEGKVVSEEEIPFFQGTKIEIKDLFYNTPVRRKFLKTESGEEKKNRTRVQTMALGEP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F +       + +  +       ER+  + GE+  ++ + ++   N +TL+G+   P
Sbjct: 184 SIGFRYVQNGKEVFHVQKEEP----LERVLSIYGENLRDHLLPVHSSRNGMTLRGFISHP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F + +    + F+N R+V+ KF    ++  Y E +P G +P   L  ++    VDVNVH
Sbjct: 240 DFYKSSRMGQFFFVNNRSVELKFSAQILKRCYGELLPSGAFPYAFLFFDLPREFVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL----- 355
           P K  +RF +   I   + Q I + +          + +++       ++          
Sbjct: 300 PQKKEVRFLSEETITGILFQGITEVLRTSTPVEFLEMRRRLSMPIPYHSSADKSQFGGEG 359

Query: 356 ---------------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
                           +      N +    L  + +        D      +   + ++ 
Sbjct: 360 MSMGGPGFGFGMAGRGQAVWGSQNEEGNPLLGPSSIEGRAGFSLDGIGAGTNLHLLGDNL 419

Query: 401 ATH--YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
             H  +        I + +I+++  DGL I+DQH AHER+ +E++ +D  S    SQ+LL
Sbjct: 420 TKHNLFVPKKHYGVIFETFILAEAEDGLYIIDQHTAHERIRYEEVLRDLKSKAYKSQSLL 479

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           TP  ++L + E   ++        LGI  E F    I IRE+P+ +      + + D+ +
Sbjct: 480 TPIRLELTKEEAEEMIAEKHRFSELGITLEPFSGGTILIREVPSYIDPGKETETILDLWE 539

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
                      ++  + +   +AC  +I+ G ++    +  LL+ +    N S C HGRP
Sbjct: 540 RFKSKDPEE--KELYDEMAKCVACRSAIKKGDQVSDPIIGELLQRLSYCENPSLCPHGRP 597

Query: 579 TFIKLKLSDIEKLFGR 594
           T IKL   D+E +F R
Sbjct: 598 TLIKLTRKDLETMFHR 613


>gi|154250378|ref|YP_001411203.1| DNA mismatch repair protein MutL [Fervidobacterium nodosum Rt17-B1]
 gi|226723039|sp|A7HNR3|MUTL_FERNB RecName: Full=DNA mismatch repair protein mutL
 gi|154154314|gb|ABS61546.1| DNA mismatch repair protein MutL [Fervidobacterium nodosum Rt17-B1]
          Length = 588

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 177/604 (29%), Positives = 306/604 (50%), Gaps = 32/604 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL ++++++IAAGE++  P+  +KEL+ENSLDA ++ +E  I  GGKS+ +++DNG G
Sbjct: 4   IKKLPQEVVSKIAAGEVVINPASVVKELVENSLDANATSIEVQIRNGGKSYIKVSDNGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ +++ +A+ R  TSKIS  +D  NIH++GFRGEAL SI  VS L + S     N   +
Sbjct: 64  MSRDDMLIAIDRFTTSKISALEDIYNIHSYGFRGEALSSIAEVSRLIITS--SDGNNAHR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G KI  +       GT VEV DLFF IPAR  FL SE+VET ++T+++ +  +  P
Sbjct: 122 LEVIGGKIIKITETHRERGTTVEVYDLFFNIPARRKFLSSEKVETRMVTEIVEKFMLVQP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VSF F       Y     ++ G+  +R S +  E    + +E   +S  + + G    P
Sbjct: 182 SVSFVFKIEDEIVYN----ASKGSLEDRFSIIFPEVKEFSLIE-PLQSEIMQISGIISSP 236

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + R N +    F+N R V D  +  +    Y E +  G +P  V+ L+  P ++DVN+H
Sbjct: 237 QYTRRNRSGQIFFVNKRFVIDNLLNLSFERGYGEALAQGEHPYGVIFLDFLPDKIDVNIH 296

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV------LSKKMISSFHQDNAPKTH 354
           P K  ++F +P  + N I ++I+  + K      S+        K      +Q+   + +
Sbjct: 297 PQKLQVKFSDPQNVYNEIARTIRTTLRKFSFFQMSISKNSEEEEKYSSEISNQNLKAENY 356

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
               +    N  + L+ +E   +     P    + +     + E              + 
Sbjct: 357 QHTDSEWYPNQFKNLYQKETPQTYRPYEPLSSISQNLLLPQLNEKSLP-----KEFIVLK 411

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             YI+ +  DGLVI+D HAAHER+I+E+++      K  +  LL P  I L +    L  
Sbjct: 412 DRYIVFEDLDGLVIIDFHAAHERIIYEQLK----ENKFETVQLLIPLHIKLGKSFLQLSQ 467

Query: 475 EHDEDLHRLGIKAE----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           +  ++  + G   E      G   + I++IP+IL   +   +  ++++   +    +   
Sbjct: 468 QLTDEFKKYGFDFEIKTLEDGSGEVVIKQIPSILKVTDASNVFLEVLE---EYRIPFEKP 524

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
             +  +LA+ AC  ++++G K+   E+ ++++E+ K+ N   C HGRP  +KL  S ++ 
Sbjct: 525 KGLTYVLASKACKSAVKTGDKLSHDEVQQIIKEI-KSKNLLTCPHGRPIMMKLSFSQLDS 583

Query: 591 LFGR 594
            F R
Sbjct: 584 FFER 587


>gi|325956128|ref|YP_004286738.1| DNA mismatch repair protein [Lactobacillus acidophilus 30SC]
 gi|325332693|gb|ADZ06601.1| DNA mismatch repair protein [Lactobacillus acidophilus 30SC]
          Length = 626

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/636 (27%), Positives = 301/636 (47%), Gaps = 57/636 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIERDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEILTAT-DGAIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + V+DLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 RATFSGGNKKGQEDAASQKGTKITVQDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSFT S        +   + NGN  + ++ V G        ++  +  +  + G    
Sbjct: 182 PQVSFTLSNTGKI---LLRTTGNGNLKQTVANVYGRHIAEKMEDIEAEDTDFKVTGLISK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   + +  YP+ V+ +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIRNFQLNTAIMDGYGSKLEVRHYPIAVVSIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R      +   I  +I  A+ +K   TS+          L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITTAISNALVEKVEQTSAFANLENKRETLVDQLQFNLNQDVV 358

Query: 351 P-----------KTHLPKYATS-------------------LTNTQEKLFLQENRLSTND 380
                       +   PK+  +                   +T T ++   ++ +L+   
Sbjct: 359 NTERKEVPEIHDQVEKPKFKATKETGKYVDLNIPRENDKYIITKTWDQNVEEQQKLTPFG 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             P++    S  ++ +  +      +G         YII++    L ++DQ AA  RL F
Sbjct: 419 ASPANQEVISSGDEVLANNLPRLAYVGQT-----DTYIIAENEGDLFLIDQVAARRRLQF 473

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           EK  Q   S KI  Q LLTP +++L   +   I +  E + ++GI  E FG N+  +R  
Sbjct: 474 EKTYQILASKKIVQQGLLTPIVLELGNLDFIQIKDKLEQIKQIGIYLEEFGQNSFIVRSY 533

Query: 501 PAILSKKNIPQLLRDIIDEI--IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           P  + + NI + +R I+D    +D   +  L  R+  + A      ++     + + E  
Sbjct: 534 PTWIHE-NIEETIRQILDSYLNLDKGQSEKLFKRVAEMEA----KHAVTGKIDLSAAEAK 588

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++ ++ K  +      GR   +++  ++++K+F R
Sbjct: 589 QIISDLRKTADPYHDASGRLVLVRMSQNELKKMFKR 624


>gi|206890464|ref|YP_002249870.1| DNA mismatch repair protein MutL [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|238058938|sp|B5YIZ6|MUTL_THEYD RecName: Full=DNA mismatch repair protein mutL
 gi|206742402|gb|ACI21459.1| DNA mismatch repair protein MutL [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 544

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 179/595 (30%), Positives = 296/595 (49%), Gaps = 55/595 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E I+ +I+AGE++ERP+  +KELIENS+DA ++ +   I   G +  ++ D+G 
Sbjct: 3   RIKILPETIVGKISAGEVVERPASVVKELIENSIDAGANSISVYIKEFGIAEIKVIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S+++ +A QRH TSKI D  D   I + GFRGEAL SI  VS L ++++    +TG 
Sbjct: 63  GIPSDDVILAFQRHATSKIKDEKDLQRISSLGFRGEALYSIANVSKLKIITQYKDEDTGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++G  + S +PV    GT VE+RDLFF  P R  FLKS   E   I + ++   +AY
Sbjct: 123 EVYLTGGNLVSQKPVV-TKGTTVEIRDLFFNTPVRRKFLKSSYTEKAHIIETVQNYCLAY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF+    +     +          +RISQV G +F           +   ++ + G 
Sbjct: 182 PEISFSLFIDREEVLNI---PQVKTLYDRISQVFGLEFTEKLKFKTISKDNYKIELFLGG 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R +  +  +F+N R V+D  I++TI  A+        +P   + + + P  VD NV
Sbjct: 239 EELLRKSKGRQLIFVNRRPVKDFSIVNTIYKAFHI---NENHPQFFIFINLPPEDVDFNV 295

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR P II   I +     +++  + +S +  +      + D +  + +  + 
Sbjct: 296 HPAKKEVRFREPQIIHQLIFR-----MSEYQVKSSMIAEETNQWKVNADLSSISQISAFY 350

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           T     +E++F                                          I    ++
Sbjct: 351 TESIFNKEEIF--------------------------------------HFFSIGDAIVV 372

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            Q  DG+V +D HAAHER+ FEK+    +        L  P +I+L   +  LI E+   
Sbjct: 373 IQRVDGIVFLDFHAAHERVNFEKILNKMSEQ---IVKLTFPHVINLNPQDYVLIKENLHI 429

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L+ LGI+AE FG N+I IR +P I+   +I  ++ +I   + + ++T    +    I AT
Sbjct: 430 LNELGIEAEDFGENSIVIRALPEIIKYIDIAGMIENIALTLKEGTSTPDFIEIKRKIAAT 489

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC+ S+R+  K+   E+  LL+E+E+  +   C HGRP    + L +I+K F R
Sbjct: 490 IACHSSLRANEKINHFEIKALLQELERTSDPEHCPHGRPVRKFISLDEIKKWFLR 544


>gi|58336746|ref|YP_193331.1| DNA mismatch repair protein [Lactobacillus acidophilus NCFM]
 gi|227903307|ref|ZP_04021112.1| DNA mismatch repair protein [Lactobacillus acidophilus ATCC 4796]
 gi|81311521|sp|Q5FLX4|MUTL_LACAC RecName: Full=DNA mismatch repair protein mutL
 gi|58254063|gb|AAV42300.1| DNA mismatch repair protein [Lactobacillus acidophilus NCFM]
 gi|227868936|gb|EEJ76357.1| DNA mismatch repair protein [Lactobacillus acidophilus ATCC 4796]
          Length = 631

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 177/636 (27%), Positives = 290/636 (45%), Gaps = 52/636 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKISNEHDLFKVATLGFRGEALASISAVSHVEILTATKGA-IGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + VRDLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 KATFSGGNKKGQEDAAAREGTQITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +     NGN  + ++ V G        E   K N+  + G    
Sbjct: 182 PSVSFTLSNTGK---VLLRTPGNGNLKQTVANVYGRHIAEKMEEFEAKDNDFKISGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP++VL +++DP  VDVNV
Sbjct: 239 PELTRSTRNFVSILLNGRYIRNFQLNTAIMDGYGAKLAARHYPIIVLAIQVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R      +   I  +I     KK   TS+          L  ++  + +Q+  
Sbjct: 299 HPTKQEVRLSKEKELSRLITSTISNVFIKKTEQTSAFANLENKRETLVDQLQFNLNQNVV 358

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV-------------- 396
                        N + +   +  +         D     ED+  +              
Sbjct: 359 NTARKKTPEIHENNEKPEFLAKPKKPEEEKTDYVDLNIPREDDKYIITKTWDKNVLLQQD 418

Query: 397 -----------------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                            +E+ A +        QI   YII++    L ++DQ AA  RL 
Sbjct: 419 LRPFSNTLCDSEVISSGDETLANNLPQLSYIGQIDT-YIIAENNSDLFLIDQVAARRRLQ 477

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           FEK+ +   S KI  Q LLTP +++    +   I +  + + ++GI  E FG N+  +R 
Sbjct: 478 FEKIYEMLLSKKIVQQGLLTPIVLEFGNLDFIQIKDKIDQIKQIGIYLEDFGQNSFIVRS 537

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY-GSIRSGRKMQSIEMN 558
            P  +   ++ + +R I+D  ++     + ++  + + A  A    S +    + + E +
Sbjct: 538 YPTWI-HNDVEETIRQILDGYLNLDKGKS-ENLFKRVAAMQAKRDISGKIN--LAAAEAS 593

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++L ++ K  +      GR   +++  ++++K+F R
Sbjct: 594 QILIDLRKTEDPYHDADGRLVLVRMSENELKKMFKR 629


>gi|260494854|ref|ZP_05814984.1| DNA mismatch repair protein MutL [Fusobacterium sp. 3_1_33]
 gi|260198016|gb|EEW95533.1| DNA mismatch repair protein MutL [Fusobacterium sp. 3_1_33]
          Length = 648

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 185/659 (28%), Positives = 318/659 (48%), Gaps = 84/659 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 7   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   +D  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 66  GMSKEDLLLSIERHATSKILTKEDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  R A+A 
Sbjct: 126 QMNVLGGKVTNLKDIQRNVGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLREALAN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 186 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 234 ANLFKANRDSLFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPNEIDVNV 293

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI--------------------------------- 326
           HP+K  ++F N   I + +   I+                                    
Sbjct: 294 HPSKKVVKFANQNAIFDLVKGEIENFFIDDENFISPYIEVDNEVEDNTKNNFLDINDFKD 353

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
           + +  S  SV+ K+  S  +  +        +  + T T+  +   E +  + ++   D+
Sbjct: 354 DMQDFSQLSVVKKEDYSKKNYRDIEVEKEKTFGNAGTTTENSINQNEIKEDSKNIENFDN 413

Query: 387 PTYSEDN-------------DPVEESEATHYQLGIACAQIHQNY---------------- 417
              +  +             +  E ++    Q  +   +I  ++                
Sbjct: 414 SVKNSISVDKNKVEINDDIIEKSENNKYIFNQEDVNRGKIFDDFSSLKNIDFKVIGQVFD 473

Query: 418 --IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             I+ +    L I DQH  HER+++EK++Q++ +  ++ Q LL P   +L   E  L +E
Sbjct: 474 TFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQNLLVPIRFELDPREKQLALE 533

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E     G   + F  N I +R IP +  + +   ++R+I+D I  +      +D  EN
Sbjct: 534 NIEIFSSFGFDIDDFDKNEILLRSIPTMNLRDSYENIIREILDNISKNKD----KDIREN 589

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I+ +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 590 IIVSMSCKGAIKANHKLTLEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 647


>gi|300712236|ref|YP_003738050.1| DNA mismatch repair protein MutL [Halalkalicoccus jeotgali B3]
 gi|299125919|gb|ADJ16258.1| DNA mismatch repair protein MutL [Halalkalicoccus jeotgali B3]
          Length = 649

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 182/636 (28%), Positives = 295/636 (46%), Gaps = 49/636 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  + +++IAAGE++ERP+  +KEL+ENSLDA ++ +   +  GG+   ++ D+G G
Sbjct: 8   IRALDPETVDKIAAGEVVERPASVVKELVENSLDAGATGITVAVGSGGRDRIRVADDGVG 67

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           M    +  AV++H TSK+ D  D    + T GFRGEAL +IGAVS L + ++P  + TG 
Sbjct: 68  MNEGSVRKAVEQHTTSKLRDVADLERGVSTLGFRGEALYTIGAVSRLAITTKPRGSETGT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++G ++ SV P     GT VEV DLF+  PAR  +LK E  E + +  V+ R A+A 
Sbjct: 128 KLVLAGGEVESVEPAGCPEGTAVEVTDLFYNTPARKKYLKREATEFDHVNTVVTRYALAN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN--EKSNEITLQGYT 237
           P V F         +     +  G+    +  V G +     V +          L GY 
Sbjct: 188 PGVRFALEHDGREVF---STTGQGDLQATVLSVYGREVARAMVPIEGLAAGPLEGLSGYV 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R +      ++NGR V+ K I S +  AY   +   RYP  VL L++ P  VDV
Sbjct: 245 SDPETTRSSPAYVSTYVNGRYVRSKPIRSAVVGAYGTQLAPDRYPFAVLDLDVSPGTVDV 304

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG-----------------ISTSSVLSKK 340
           NVHP K  +RF +   I   I +++++ +   G                 I+ S+  +  
Sbjct: 305 NVHPRKMEVRFGDGEAIEAQIEKTVRETLLDHGLIRSSAPRGRSTPEETEIAPSADGTDG 364

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              +   ++ P+          T    +      R +      +D P  +  + PVE  E
Sbjct: 365 TDGAAGSNDTPEPGSGAGGDRPTGASRQAGEALKRSNDAADGANDTPRSAASSPPVEREE 424

Query: 401 ATHYQL----------------------GIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           +T  +                            QI   Y++     GL++VDQHAA ER+
Sbjct: 425 STEKRFSSLTRQATFGEPDEPNYERLPDLRVLGQIQDTYVLCAAPKGLLVVDQHAADERV 484

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            +E++R +      T+QTL+ P  ++L   E  L   H+  L R+G  A R G   + I 
Sbjct: 485 HYERLRAELAGET-TTQTLVEPVELELTAREAELFDAHEGALARVGFAATREG-RTVRIG 542

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +PA       P+LLRD +   +      T++  ++ +L  +ACY ++     ++   + 
Sbjct: 543 AVPAAFDATLSPELLRDALSACLSGDPGETVEATVDELLGDLACYPAVTGNTSLREGSVV 602

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            LL  ++   N   C HGRPT I++   ++ + F R
Sbjct: 603 DLLGALDGCENPYACPHGRPTVIRIDREELAERFER 638


>gi|323699156|ref|ZP_08111068.1| DNA mismatch repair protein MutL [Desulfovibrio sp. ND132]
 gi|323459088|gb|EGB14953.1| DNA mismatch repair protein MutL [Desulfovibrio desulfuricans
           ND132]
          Length = 639

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 181/646 (28%), Positives = 287/646 (44%), Gaps = 68/646 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   + NQIAAGE++ERP+  +KEL+EN+LDA ++RV+  I  GG++   + DNG G
Sbjct: 7   IRVLPPGLKNQIAAGEVVERPASVVKELVENALDAGATRVDVTIEQGGRALIVVQDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRP-------P 113
           + + ++ +AV RH TSKI D  D S+I +FGFRGEALPSI +VS  T+ SR         
Sbjct: 67  IPASQLALAVTRHATSKIRDFHDLSDIGSFGFRGEALPSIASVSRFTMTSRAGGVEGPDE 126

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
                A I +   ++++  P A+  GT VEVRDLF   PARL FLK+E  E     DV+ 
Sbjct: 127 GPAEAAFIEVRAGEVTATGPAALASGTRVEVRDLFAATPARLKFLKAETTENRRCQDVLM 186

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
           R+++A+  V+F+ +      +++     +    +R++              +   +    
Sbjct: 187 RVSLAHLHVAFSLTVGGRELFRL---PPDQTLADRLAAFWPPAVCQGLKPFDCGRDGYRA 243

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G  G P   +G  ++  +++NGR VQDK +L+ +R AY   +    YP +VL L++   
Sbjct: 244 HGAAGSPNTAQGRGDRILLYVNGRPVQDKRMLAAVRQAYKGMLLSREYPQIVLFLDLPRD 303

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI--------------------------- 326
           QVDVNVHPAK  +RF +   + + I   + +A+                           
Sbjct: 304 QVDVNVHPAKLEVRFLDEHRVFSAIRSGVLQALSGPDGEIASGCVSPERQDQAPSAFGPG 363

Query: 327 --------------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
                         +    +  +        +F +D A    LP   +           +
Sbjct: 364 PAFPPDRDPAEPARSTHRPAAFADAKFSTYRAFREDRARALDLPVTPSGFPAPGRPGTAE 423

Query: 373 E----NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                 R +  D    +               +          QI   Y++ +  + +++
Sbjct: 424 PAPTLAREAGPDGPRFEPAGPEPARPDALRPASLAGGGYTYLGQIADTYLVLRRGEDMLL 483

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           VDQHAAHER++   MR      K  SQ L     + L   E  ++ +  EDL  +G   E
Sbjct: 484 VDQHAAHERILLAAMRD--QRKKGDSQPLALALELPLHPSEAEVLADLREDLRAMGFVIE 541

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
             GP    +R IP  L      + L+D + E             ++++   MAC  +I++
Sbjct: 542 LDGPAKALVRGIPPTLETGEAREYLKDALAE---------KARGLDDLWTMMACKTAIKA 592

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +   E   LL      P    C HGRP  ++    D+EKLF R
Sbjct: 593 RQPLAVDEALALLETWLVTPEREFCPHGRPVVLRWTPGDLEKLFKR 638


>gi|154494374|ref|ZP_02033694.1| hypothetical protein PARMER_03729 [Parabacteroides merdae ATCC
           43184]
 gi|154085818|gb|EDN84863.1| hypothetical protein PARMER_03729 [Parabacteroides merdae ATCC
           43184]
          Length = 621

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 174/631 (27%), Positives = 288/631 (45%), Gaps = 54/631 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +  ++  I   G++  Q+ D+G G
Sbjct: 5   IHLLPDSIANQIAAGEVIQRPASVVKELVENAVDAGAGHIQVNIKDAGRTLVQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  DD  ++HT GFRGEAL SI AVS + L +R      G  
Sbjct: 65  MSETDARMAFERHATSKISTADDLFSLHTMGFRGEALASIVAVSQVELRTRLKGAELGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +  SG ++ SV P A   G+I  V++LFF +PAR  FLKS + E   I +   R+A+   
Sbjct: 125 LVFSGSELESVEPDACTEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNS 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+ +     +  + +          +RI  V G+      + ++ +S+ +T+ G+ G P
Sbjct: 185 QVALSLYHNDTEIFNLP----ESGLRQRIVNVYGKTLNQKLLSVDAQSSLVTISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      Y F+NGR ++  +    +  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 241 DSAKKRGALQYFFVNGRFMKHPYFHKAVMQAYEQLIPAGEQPNYFIYFTLDPATIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K   P  A 
Sbjct: 301 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKEAAPYKAP 360

Query: 361 -----SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT------------- 402
                S  N  E    ++     + L    +   +      E + +              
Sbjct: 361 RVQVNSGYNPFETSSYKKPEFDWSKLYNDFEGDRNAIRQGAELTGSFLAPDISEPTIEAD 420

Query: 403 -----------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                         +   C Q    YII+    GL ++DQH AH R++F++   +    +
Sbjct: 421 EVAVQDTSGSLFNDVSNPCYQYKGKYIITSLKSGLALIDQHRAHVRILFDQYITNIRQQR 480

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
             SQ +L PEI++    E  ++    ED+  +G      G N+ AI  +PA +   +   
Sbjct: 481 GASQQVLFPEIVEFTASEATVLPTLLEDMRFIGFDLTNLGNNSYAINGLPAGVENLDPVS 540

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMAC---------YGSIRSGRKMQSIEMNRLLR 562
           L+R+++D +ID+       +  E I     C           +IR G+ +   EM+ LL 
Sbjct: 541 LIRNMVDRVIDTG-----CEVHEEI-----CDSLALSLAKAAAIRPGKILSGEEMDNLLA 590

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            +     S+    G+    KL   ++EK F 
Sbjct: 591 SLFSCQESNLTPDGKTIISKLTDEELEKRFK 621


>gi|293321556|emb|CAQ52812.2| mutL [Pseudomonas avellanae]
          Length = 560

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/558 (34%), Positives = 299/558 (53%), Gaps = 31/558 (5%)

Query: 68  IPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG 125
           +P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   Q+   G
Sbjct: 1   MPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAWQVETEG 60

Query: 126 EKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
             + +  +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A   V+F
Sbjct: 61  RDMDARVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLHEVIKRMALARFDVAF 120

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                      ++    +     R+S + G  F+  A+ +  + N + L G+ G+PTF+R
Sbjct: 121 HLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVGLPTFSR 180

Query: 245 GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKS 304
             A+  Y F+NGR V+ +     +R AY + +  GR+P  VL  E+DP  VDVNVHP K 
Sbjct: 181 SQADLQYFFVNGRAVRRQTGAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVNVHPTKH 240

Query: 305 YIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            +RFR+  ++ +F+  ++ +A+      N+ G S       ++      +  P+  +   
Sbjct: 241 EVRFRDGRMVHDFLYGTLHRALGDVRPENQLGGSVPVAAEPRLTGPDAGEFGPQGEMRLA 300

Query: 359 ATSLTNTQEKLFLQE--------------NRLSTNDLLPSDDPTYSED--------NDPV 396
              L   Q + F +                R +T   +      Y E            +
Sbjct: 301 NNVLEQPQGEPFARPAGSGSGSGYQYQYSPRPTTGVPVAEAQSAYREFFAPLPGTTPSAL 360

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            ES +    LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +  ++ Q 
Sbjct: 361 PESPSDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANEGLSGQP 420

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +    +L+ D+
Sbjct: 421 LLVPESIAVSQREADCAEEHITTFQRLGFELQRLGPETLAIRQIPALLKQAEANRLVSDV 480

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S QCNHG
Sbjct: 481 LADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMESTERSGQCNHG 540

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ ++ LSD++KLF R
Sbjct: 541 RPTWTQMGLSDLDKLFLR 558


>gi|294785887|ref|ZP_06751175.1| DNA mismatch repair protein MutL [Fusobacterium sp. 3_1_27]
 gi|294487601|gb|EFG34963.1| DNA mismatch repair protein MutL [Fusobacterium sp. 3_1_27]
          Length = 648

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 187/659 (28%), Positives = 318/659 (48%), Gaps = 84/659 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 7   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 66  GMSKEDLLLSIERHATSKIFTKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  + A+A 
Sbjct: 126 QMNVLGGKVTNLKDIQRNIGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLKEALAN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 186 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 234 ANLFKANRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 293

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------KGISTSSVLSKKMISSFHQDNAPKT 353
           HP+K  ++F N   I + +   I+             I + + + +   ++F   N  K 
Sbjct: 294 HPSKKVVKFANQNAIFDLVKGEIENFFTDDEDFISPYIESENEVEENTKNNFLDINDFKD 353

Query: 354 HLPKYAT---------------SLTNTQEKLFLQ-----ENRLSTNDLLPSDDPTYSEDN 393
            +  ++                 +   +EK F       EN +++N++        + DN
Sbjct: 354 DVQDFSQLSVVKKEDYSKKDYKDIEIEKEKTFGNAGTTTENAINSNEIKEDSKNIENFDN 413

Query: 394 --------------------DPVEESEATHYQLGIACAQIHQNYII-------------- 419
                               +  E ++    Q  ++  +I  ++                
Sbjct: 414 SVKNLIPVNKNKVEINDGIIEKSENNKYIFNQEDVSRGKIFDDFSSLKNIDFKVIGQVFD 473

Query: 420 ----SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
                +    L I DQH  HER+++EK++Q++ +  ++ Q LL P   +L   E  L +E
Sbjct: 474 TFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQNLLVPIRFELDPREKQLALE 533

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E     G   + F  N I +R IP +  + +   + R+I+D I  +       D  EN
Sbjct: 534 NTEIFSSFGFDIDDFDKNEILLRSIPTMNLRDSYENIFREILDNISKNKDI----DIREN 589

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I+ +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 590 IIVSMSCKGAIKANHKLTIEEMYSMVAKLHEVRE-YTCPHGRPIIVKMSLLDLEKLFKR 647


>gi|315037643|ref|YP_004031211.1| DNA mismatch repair protein [Lactobacillus amylovorus GRL 1112]
 gi|312275776|gb|ADQ58416.1| DNA mismatch repair protein [Lactobacillus amylovorus GRL 1112]
          Length = 626

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/636 (27%), Positives = 299/636 (47%), Gaps = 57/636 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIERDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEILTAT-DGAIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + V+DLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 RATFSGGNKKGQEDAASQKGTKITVQDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSFT S        +   + NGN  + ++ V G        ++  +  +  + G    
Sbjct: 182 PQVSFTLSNTGKI---LLRTTGNGNLKQTVANVYGRHIAEKMEDIEAEDTDFKVTGLISK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   + +  YP+ V+ +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIRNFQLNTAIMDGYGSKLEVRHYPIAVVSIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R      +   I  +I  A+ +K   TS+          L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITTAISNALVEKVEQTSAFANLENKRETLVDQLQFNLNQDVV 358

Query: 351 P-----------KTHLPKYATS-------------------LTNTQEKLFLQENRLSTND 380
                       +   PK+  +                   +T T ++   ++ +L+   
Sbjct: 359 NTERKEVPEIHDQVEKPKFKAAKETGKYVDLNIPRENDKYVITKTWDQNVEEQQKLTPFG 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
              ++    S  ++ +  +      +G         YII++    L ++DQ AA  RL F
Sbjct: 419 ASSANQEVISSGDEVLANNLPRLAYVGQT-----DTYIIAENEGDLFLIDQVAARRRLQF 473

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           EK  Q   S KI  Q LLTP +++    +   I +  E + ++GI  E FG N+  +R  
Sbjct: 474 EKTYQILASKKIVQQGLLTPIVLEFGNLDFIQIKDKLEQIKQIGIYLEEFGQNSFIVRSY 533

Query: 501 PAILSKKNIPQLLRDIIDEI--IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           P  + + NI + +R I+D    +D   +  L  R+  + A      ++     + + E  
Sbjct: 534 PTWIHE-NIEETIRQILDSYLNLDKGQSEKLFKRVAEMEAE----HAVTGKIDLSAAEAK 588

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++ ++ K  +      GR   +++  ++++K+F R
Sbjct: 589 QIINDLRKTADPYHDASGRLVLVRMSQNELKKMFKR 624


>gi|124485988|ref|YP_001030604.1| DNA mismatch repair protein [Methanocorpusculum labreanum Z]
 gi|166232096|sp|A2SSN1|MUTL_METLZ RecName: Full=DNA mismatch repair protein mutL
 gi|124363529|gb|ABN07337.1| DNA mismatch repair protein MutL [Methanocorpusculum labreanum Z]
          Length = 588

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 161/600 (26%), Positives = 288/600 (48%), Gaps = 22/600 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDN 59
           +++ L E+ I+ IAAGE++ER +  +KEL+EN++DA++  +   I     G +   +TD+
Sbjct: 3   RVKILDEETISHIAAGEVVERAASVVKELVENAVDADAQIIRIGISADKTGITKISVTDD 62

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM  ++  +A ++H TSKIS  +D   I T GFRGEAL SI A+S +T  ++   + +
Sbjct: 63  GIGMDFDDALLAFRQHATSKISRPEDLDGITTLGFRGEALASIAAISKVTFTTKERGSPS 122

Query: 118 --GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
              A++ I G ++ S   V    GT V +  LF+  PAR  F KS   E + + D++ R+
Sbjct: 123 PEAARVVIHGGELISHSAVGAPEGTSVLIDALFYNTPARRKFQKSVPTELSHVYDMVERI 182

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A++   +SF        R++       G++P+ I+ V G  F      ++     + + G
Sbjct: 183 ALSNRNISFVLLYNGKERFQTF---GTGSYPDVIAAVFGSTFSKELTPVSGSFGPVKIDG 239

Query: 236 YTGIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           +   P         +FY+ INGR V  + +   IR  Y   +P G YP   L + +DPR 
Sbjct: 240 WITRPGSEMKTTQTRFYLSINGRQVTSRQLQWAIREGYGTLLPKGMYPAAFLDIVLDPRD 299

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP K  +R      +   +  ++  +++++      V S   + +  ++      
Sbjct: 300 VDVNVHPTKREVRLSREREVMRCVQDAVYTSLHEER-----VFSTAPMPTLARETITTLP 354

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           +      +     K  + E R +   L  ++      ++  + E++    ++        
Sbjct: 355 VEIVGEPVPVYAGKQEMHEARQAP--LKQTEKQLRRTESADLPETDLFVPEVLGQIG--D 410

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
              +    +  L++VDQHAAHER++++++    +S +   Q L+ P+ I L + E A + 
Sbjct: 411 TYILAKNESGDLIVVDQHAAHERIMYDQLLARSSSAE-AGQELIVPQPITLSKKETAALP 469

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           +  + L   G   E FG +   +R +P + S    P  +  I+D  +D        + ++
Sbjct: 470 DLLDVLAAAGYLLEPFGKDVWMVRSVPVVSSTLGDPDTIHAILDAALD--GVGNTDEVLD 527

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +L T AC   ++    +   +M RLLR++    +   C HGRPT I L  S +  +F R
Sbjct: 528 RVLKTAACRAVVKGNTPLTIEQMQRLLRQLMATKSPYTCPHGRPTTIVLSKSRLAGMFLR 587


>gi|319900075|ref|YP_004159803.1| DNA mismatch repair protein MutL [Bacteroides helcogenes P 36-108]
 gi|319415106|gb|ADV42217.1| DNA mismatch repair protein MutL [Bacteroides helcogenes P 36-108]
          Length = 644

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 166/648 (25%), Positives = 283/648 (43%), Gaps = 68/648 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQEIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI +  D   + T GFRGEAL SI AV+ + L +RP     G +
Sbjct: 65  MSETDARLSFERHATSKIHEAADLFALRTMGFRGEALASIAAVAEVELKTRPASEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G K+ S   V+   G+   V++LFF +PAR  FLK+   E + I +   R+A+ +P
Sbjct: 125 LMIAGSKVESQEAVSCPKGSNFSVKNLFFNVPARRKFLKANSTELSNILNEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F   +  +  + +          +RI  V G+      + +   +  + + GY   P
Sbjct: 185 EVAFYLYSNDTELFNLPVMP----LRQRIMSVFGKKLNQQLLAVEVDTTMVKVSGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  E+DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFEVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDN-------A 350
           P K+ I+F N   I   +  ++++ + +     +          I +F Q          
Sbjct: 301 PTKTEIKFENEQAIWQILSAAVKETLGRFNAVPTIDFDTEDMPDIPAFEQARPIEPPKVH 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES----------- 399
             T    + TS   +              + L +     S  N+PVEE            
Sbjct: 361 YNTDFNPFKTSSAPSSSYGGDYSRPKMEWEGLYAGVEKASRMNEPVEEELFSEDGREAPS 420

Query: 400 ------------------------------EATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                                         +    + G    Q    +I++    GL+++
Sbjct: 421 APLEEMPDGGGMPFLRESAGDTVSSSSLYGDEPVIEKGGRHLQFKGRFILTSVKSGLMLI 480

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQH AH R++FE+        +  SQ +L PEI+ L   E A++ +   DL  +G     
Sbjct: 481 DQHRAHIRVLFERYLGQIRQKQGVSQGVLFPEIVQLPASEAAVLEDISGDLAAVGFDLSP 540

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT-----YTLQDRIENILATMACYG 544
            G  + AI  IP+ +   +   L+R+++   ++          T+        A      
Sbjct: 541 LGGGSYAINGIPSGIEGLSPVDLIRNMVHTAMEKGNDVKEEVQTILALTLARAAA----- 595

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            I  G+ + + EM+ L+  +   P+ +    G      +K  DIEKLF
Sbjct: 596 -IVYGQVLSNDEMSNLVDSLFACPSPNYTPDGHTVLATIKEEDIEKLF 642


>gi|256844832|ref|ZP_05550290.1| DNA mismatch repair protein mutL [Fusobacterium sp. 3_1_36A2]
 gi|256718391|gb|EEU31946.1| DNA mismatch repair protein mutL [Fusobacterium sp. 3_1_36A2]
          Length = 648

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 188/659 (28%), Positives = 317/659 (48%), Gaps = 84/659 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 7   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 66  GMSKEDLLLSIERHATSKIFTKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  + A+A 
Sbjct: 126 QMNVLGGKVTNLKDIQRNIGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLKEALAN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 186 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 234 ANLFKVNRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 293

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------MISSFHQ 347
           HP+K  ++F N   I + +   I+          S  +  +             I+ F  
Sbjct: 294 HPSKKVVKFANQNAIFDLVKGEIENFFTDDEDFISPYIEAENEVEENTKNNFLDINDFKD 353

Query: 348 DNAPKTHLPKYATSLTN---------TQEKLFLQ-----ENRLSTNDLLPSDDPTYSEDN 393
           D    + L        +          +EK F       EN +++N++        + DN
Sbjct: 354 DVQDFSQLSVVKKEDYSKKDYKDIEIEKEKTFGNAGTTTENAINSNEIKEDSKNIENFDN 413

Query: 394 --------------------DPVEESEATHYQLGIACAQIHQNY---------------- 417
                               +  E ++    Q  ++  +I  ++                
Sbjct: 414 SVKNLIPVNKNKVEINDGIIEKSENNKYIFNQEDVSRGKIFDDFSSLKNIDFKVIGQVFD 473

Query: 418 --IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             I+ +    L I DQH  HER+++EK++Q++ +  ++ Q+LL P   +L   E  L +E
Sbjct: 474 TFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQSLLVPIRFELDPREKQLALE 533

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E     G   + F  N I +R IP +  + +   + R+I++ I  +       D  EN
Sbjct: 534 NIEIFSSFGFDIDDFDKNEILLRSIPTMNLRDSYENIFREILNNISKNKDI----DIREN 589

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I+ +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 590 IIVSMSCKGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 647


>gi|307565737|ref|ZP_07628206.1| DNA mismatch repair protein MutL [Prevotella amnii CRIS 21A-A]
 gi|307345563|gb|EFN90931.1| DNA mismatch repair protein MutL [Prevotella amnii CRIS 21A-A]
          Length = 645

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/647 (25%), Positives = 296/647 (45%), Gaps = 63/647 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKEL+ENS+DA+++ +  ++   G++  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELVENSVDAKATIINVLVIDSGRTSIQVIDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD   +HT GFRGEAL SI AVS + L +R      G  
Sbjct: 65  MSDTDARLSFERHATSKIRKADDLFALHTMGFRGEALASIAAVSQVELKTRIEGQELGCH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++ISG K  +  P     G+   + +LFF +PAR  FLKS   E N I    +R+A+ YP
Sbjct: 125 LSISGGKFIAQEPCQCTIGSNFLIENLFFNVPARRKFLKSNTTELNNIITAFQRIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  S  Y +      G+F +R+ ++ G+    + + ++ ++    + G+ G P
Sbjct: 185 DINFTLHSNGSEVYNLR----RGSFKQRVIEIFGKRLNQSLLPIDIETTLCNIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      Y+F+N R ++  +    I +AY   IP G      +  ++ P  +DVN+H
Sbjct: 241 ESAKKKGVHQYLFVNERYMKHPYFHKAIMSAYERLIPQGEMVPYFIYFDVPPENIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   ++ +++  I K    +S       +  I  F  +N        
Sbjct: 301 PTKTEIKFENEQAIWQILMAAVRDTIGKFYDVSSIDFDTEGRPDIPVFSPNNETAAPETN 360

Query: 358 YATSLTNTQEKLFLQEN---------------------------RLSTNDLLPSDDPTYS 390
           +  +     E  F  +                                 + L +     +
Sbjct: 361 FNPNFNPFLENSFSDKENHITTTNNNTDNPKYNINSNVSNHIKVNTDNWEELYAGSLQNN 420

Query: 391 EDNDPVEESEATHYQLGIA------------------------CAQIHQNYIISQTTDGL 426
              + ++++                                    Q    YII+    GL
Sbjct: 421 TTTNNIQQTSLLDLDFDENGEEILIQSKLSKDIATAIEEKSPSHYQYKGRYIITAIKSGL 480

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           + +DQH AH R+++E   + F   K  SQ +L PE+I L + E +++ +   ++H +G +
Sbjct: 481 MFIDQHRAHIRILYENYLKQFTEHKGHSQKVLFPEVIHLTKTEHSILEKILPEMHDIGFQ 540

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM-ACYGS 545
            +  G ++ AI  +P  L   N   L+++II  +  S    ++++ I   +AT  A   +
Sbjct: 541 IDNIGGDSFAINGVPIGLEGLNTINLVQEII--VTASEKNISIKEEINISIATKLAYNAA 598

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           I  G+ + + EM  L+ ++      +   +G+     LK  DI+ LF
Sbjct: 599 IPVGQVLGNKEMESLVNDLFACDTVNYTPNGKTIIAILKQQDIDHLF 645


>gi|218262303|ref|ZP_03476817.1| hypothetical protein PRABACTJOHN_02491 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223454|gb|EEC96104.1| hypothetical protein PRABACTJOHN_02491 [Parabacteroides johnsonii
           DSM 18315]
          Length = 621

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/631 (27%), Positives = 290/631 (45%), Gaps = 54/631 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA +  ++  I   G++  Q+ D+G G
Sbjct: 5   IHLLPDSIANQIAAGEVIQRPASVVKELVENAVDAGAGHIQVNIKDAGRTLVQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  DD  ++HT GFRGEAL SI AVS + L +R      G  
Sbjct: 65  MSETDARMAFERHATSKISTADDLFSLHTMGFRGEALASIVAVSQVELRTRLKGAELGTH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +  SG ++ SV P A   G+I  V++LFF +PAR  FLKS + E   I +   R+A+   
Sbjct: 125 LVFSGSELESVEPDACTEGSIFSVKNLFFNVPARRKFLKSNETEFRNIINEFERIALVNS 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+ +     +  + +          +RI  V G+      + ++ +S+ +T+ G+ G P
Sbjct: 185 QVALSLYHNDTEIFNLP----ESGLRQRIVNVYGKTLNQKLLSVDAQSSLVTISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +      Y F+NGR ++  +    +  AY + IP G  P   +   +DP  +DVN+H
Sbjct: 241 DSAKKRGALQYFFVNGRFMKHPYFHKAVMQAYEQLIPAGEQPNYFIYFTLDPATIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N   I   ++ + ++A+ K     +     +        N  K  +P  A 
Sbjct: 301 PTKTEIKFENEQPIWQILMAATREALAKSSAIPTIDFDVEDAIDIPVYNPVKEAIPYKAP 360

Query: 361 -----SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT------------- 402
                S  N  E    ++     + L    +   +      E  E+              
Sbjct: 361 RVQVDSGYNPFETSSYKKPEFDWSKLYNDFEEDRTAIRQDSELIESFLVPDISEPAIEAD 420

Query: 403 -----------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                         +   C Q    YII+    GL ++DQH AH R++F++   +    +
Sbjct: 421 EVVVQDTSGSLFNDVSNPCYQYKGKYIITSLKSGLALIDQHRAHVRILFDQYIANIRQQR 480

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
             SQ +L PEI++   GE A++    ED+  +G      G N+ AI  +PA +   +   
Sbjct: 481 GASQQVLFPEIVEFTAGEAAVLPALLEDMRFIGFDLTNLGNNSYAINGLPAGVENLDPVS 540

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMAC---------YGSIRSGRKMQSIEMNRLLR 562
           L+R+++D  I++       +  E I     C           +IR G+ +   EM+ LL 
Sbjct: 541 LIRNMVDRAIETG-----CEVHEEI-----CDSLALSLAKAAAIRPGKILSGEEMDDLLA 590

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            +     S+    G+    KL   +++K F 
Sbjct: 591 SLFSCQESNLTPDGKTIVSKLTDEELDKRFR 621


>gi|221635854|ref|YP_002523730.1| DNA mismatch repair protein MutL [Thermomicrobium roseum DSM 5159]
 gi|221157732|gb|ACM06850.1| DNA mismatch repair protein MutL [Thermomicrobium roseum DSM 5159]
          Length = 576

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 164/603 (27%), Positives = 278/603 (46%), Gaps = 50/603 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L   +  +IAAGE+IERP+  +KEL+EN+LDA +SR+   + GGG    +++D+G 
Sbjct: 10  PIRVLPPNVAARIAAGEVIERPASVVKELVENALDAGASRIRISVRGGGLHEIRVSDDGC 69

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+ ++E+P+A+QRH TSK++ DD   I T GFRGEALPSI AV+ LT+ S       G Q
Sbjct: 70  GIPADELPLALQRHATSKLAEDDLERIETLGFRGEALPSIAAVAELTIASATSDAPVGRQ 129

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G +I +  P+A  PGT V VR LF  +PARL  +++ + E   I  V++R+AIA P
Sbjct: 130 LTVRGGRILADEPIAHPPGTTVTVRHLFEDLPARLAHVRNTRAEMAEIARVVQRLAIAAP 189

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-KSNEITLQGYTGI 239
            V            +    + +G+    +S++ G    ++ +     K  + +  G+   
Sbjct: 190 HVRIALRIEDRVVLQ---TTGSGDRRVVLSELYGPTLASSLLPFGPLKIGDCSCSGFVSS 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +    +V +NGR  Q + +L+ +  AY   +P GR+PV+VL++  DP  VDVN+
Sbjct: 247 PDLTRSSRRHLHVVVNGRWAQSRTVLALLEAAYQPLLPRGRHPVLVLVITADPAAVDVNI 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R R    +   I + ++  + +     + + +   I       A         
Sbjct: 307 HPAKLEVRLRAERELGQAIAEEVRSLLARTPRRFTFLEATPAIDPVRAAIAETPRPYDRP 366

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +        F                                         Q+ +  ++
Sbjct: 367 ETEEPILTPAFPP----------------------------------LRLIGQVRERLLL 392

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +    L++VDQH AHER+++E++     S    +  L  P +ID+            ++
Sbjct: 393 LEGPAMLLLVDQHRAHERVLYERLAAAHPSAD-DTVPLPEPLVIDVRPAYRDRFARWLDE 451

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII----------DSSTTYTL 529
           L   G +AE FGP +  +R +PA+      P  L+D+               +S   +  
Sbjct: 452 LAAYGFQAEPFGPRSFLVRTVPALPGVVAGPPELQDLGQPAALAPALLALLEESEDAWDD 511

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               + +L  +AC  ++R GR +    M  L++        + C HG P  ++++   + 
Sbjct: 512 TSWRDRLLIQLACRLAVRRGRPLARPAMRALVQAWGATKTPAICPHGSPIVLRVEDETLA 571

Query: 590 KLF 592
             F
Sbjct: 572 HQF 574


>gi|255522444|ref|ZP_05389681.1| DNA mismatch repair protein [Listeria monocytogenes FSL J1-175]
          Length = 555

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/558 (31%), Positives = 268/558 (48%), Gaps = 15/558 (2%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVS 104
              G +   I DNG G+  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VS
Sbjct: 1   EEAGLNKITIIDNGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVS 60

Query: 105 HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE 164
           HL + +       G  I++ G KI   +      GT +EV  LFF  PARL +LKS   E
Sbjct: 61  HLEMETST-GEAKGTTISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTE 119

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
              ITD++ R+A+A+P +SF FS        +   + NG+  + I+ + G      +V +
Sbjct: 120 LGNITDILNRLALAHPDISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIAKKSVPV 176

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
             +S +  + GY  +P  NR N N     INGR +++  ++  I+  Y   +P+GR+P++
Sbjct: 177 KAESLDFKISGYAVLPEVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPII 236

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VL +E+DP  VDVNVHPAK  +R      +   I Q I++  +K  +     +SKK    
Sbjct: 237 VLQIEMDPIIVDVNVHPAKLEVRLSKEKELGQLISQMIKETFHKLQLIPDGEISKKQKED 296

Query: 345 FHQDNAPKTHLPKYATSLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
              +    +         T T   K  + E   S  D    DD           ES+A  
Sbjct: 297 QKSEQIQMSFEENKPVKETPTLFSKPTIPEYVPSDEDAPREDDFILETMPSYEPESQAEQ 356

Query: 404 YQL-------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            +             Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q 
Sbjct: 357 EEHTKERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQE 416

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P +++    E   + E    L  +G+  E FG N+  IR  P    K    ++LR+I
Sbjct: 417 LLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREI 476

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           IDE + +  + ++    E+    M+C  SI++   + + +M  LL  + +  +   C HG
Sbjct: 477 IDEALSAP-SISIHKLREDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHG 535

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP  I+    ++EK+F R
Sbjct: 536 RPVIIQYSTYELEKMFKR 553


>gi|327182936|gb|AEA31383.1| DNA mismatch repair protein [Lactobacillus amylovorus GRL 1118]
          Length = 634

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/644 (27%), Positives = 297/644 (46%), Gaps = 65/644 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIERDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEILTAT-DGAIGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + V+DLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 RATFSGGNKKGQEDAASQKGTKITVQDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSFT S        +   + NGN  + ++ V G        ++  +  +  + G    
Sbjct: 182 PQVSFTLSNTGKI---LLRTTGNGNLKQTVANVYGRHIAEKMEDIEAEDTDFKVTGLISK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP+ V+ +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIRNFQLNTAIMDGYGSKLEARHYPIAVVSIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R      +   I  +I   + +K   TS+          L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITTAISNVLVEKVEQTSAFANLENKRETLVDQLQFNLNQDVV 358

Query: 351 P-----------KTHLPKYATS---------------------------LTNTQEKLFLQ 372
                       +   P++                              +T T ++   +
Sbjct: 359 NTERKEVPEIHDQVEKPRFKADKETEKEDTEETGKYVDLNIPRENDKYIITKTWDQNVEE 418

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
           + +L+      ++    S  ++ +  +      +G         YII++    L ++DQ 
Sbjct: 419 QQKLTPFGASSANQEVISSGDEVLANNLPRLAYVGQT-----DTYIIAENEGDLFLIDQV 473

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AA  RL FEK  Q   S KI  Q LLTP +++L   +   I +  E + ++GI  E FG 
Sbjct: 474 AARRRLQFEKTYQILASKKIVQQGLLTPIVLELGNLDFIQIKDKLEQIKQIGIYLEEFGQ 533

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEI--IDSSTTYTLQDRIENILATMACYGSIRSGR 550
           N+  +R  P  + + NI + +R I+D    +D   +  L  R+  + A      ++    
Sbjct: 534 NSFIVRSYPTWIHE-NIEETIRQILDSYLNLDKGQSEKLFKRVAEMEA----KHAVTGKI 588

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + + E  +++ ++ K  +      GR   +++  ++++K+F R
Sbjct: 589 DLSAAEAKQIISDLRKTADPYHDASGRLVLVRMSQNELKKMFKR 632


>gi|237741497|ref|ZP_04571978.1| DNA mismatch repair protein mutL [Fusobacterium sp. 4_1_13]
 gi|229429145|gb|EEO39357.1| DNA mismatch repair protein mutL [Fusobacterium sp. 4_1_13]
          Length = 648

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 186/659 (28%), Positives = 317/659 (48%), Gaps = 84/659 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 7   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-IFISDSGC 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 66  GMSKEDLLLSIERHATSKIFTKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  + A+A 
Sbjct: 126 QMNVLGGKVTNLKDIQRNIGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLKEALAN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 186 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 234 ANLFKANRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 293

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------KGISTSSVLSKKMISSFHQDNAPKT 353
           HP+K  ++F N   I + +   I+             I   + + +   ++F   N  K 
Sbjct: 294 HPSKKVVKFANQNAIFDLVKGEIENFFTDDEDFISPYIEAENEVEENTKNNFLDINDFKD 353

Query: 354 HLPKYATSLTNTQEKLFLQ--------------------ENRLSTNDLLPSDDPTYSEDN 393
            +  ++      +E    +                    EN +++N++        + DN
Sbjct: 354 DVQDFSQLSVVKKEDYSKKDYKDIEIEKEKTFCNAGTTTENTINSNEIKEDSKNIENFDN 413

Query: 394 --------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDG-------- 425
                               +  E ++    Q  ++  +I  ++   +  D         
Sbjct: 414 SVKNLISVNKNKVEINDGIIEKSENNKYIFNQEDVSRGKIFDDFSSLKNIDFKVIGQVFD 473

Query: 426 ----------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
                     L I DQH  HER+++EK++Q++ +  ++ Q+LL P   +L   E  L +E
Sbjct: 474 TFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQSLLVPIRFELDPREKQLALE 533

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E     G   + F  N I +R IP +  + +   + R+I+D I  +       D  EN
Sbjct: 534 NTEIFSSFGFDIDDFDKNEILLRSIPTMNLRDSYENIFREILDNISKNKDI----DIREN 589

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I+ +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 590 IIVSMSCKGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKISLFDLEKLFKR 647


>gi|256820971|ref|YP_003142250.1| DNA mismatch repair protein MutL [Capnocytophaga ochracea DSM 7271]
 gi|256582554|gb|ACU93689.1| DNA mismatch repair protein MutL [Capnocytophaga ochracea DSM 7271]
          Length = 612

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/617 (26%), Positives = 293/617 (47%), Gaps = 36/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+ A+KEL+EN++DA ++ ++ +I   GK+  Q+ DNG G
Sbjct: 5   IKLLPDHVANQIAAGEVIQRPASAVKELMENAIDAGATEIKLLIKDAGKTLVQVIDNGVG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  MA +RH TSKI  ++D  ++ T GFRGEAL SI A++H+ + ++ P++  G +
Sbjct: 65  MSTTDARMAFERHATSKIQKAEDLFHLQTKGFRGEALASIVAIAHVEMQTKRPEDELGTE 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P     GT + +++LFF IPAR NFLKS+ VE   I D   R+A+A+P
Sbjct: 125 IHIEGSKITRQEPCVCPTGTSIAMKNLFFNIPARRNFLKSDTVEFRHILDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI-TLQGYTGI 239
            + F      +  + +       NF +RI  + G       V +  +   +  + G+   
Sbjct: 185 AIHFFLYNNGNELFNLPAT----NFRQRIVHLFGSKTNEKLVPIIAEDTPLVQISGFIVK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +     N  ++ +N R V+++++   I +AY   I   +     + LE+DP  +D+N+
Sbjct: 241 PEYLAKTKNLQFLMVNHRFVKNQYLNHAIASAYEGLIHTDQKAEYFISLEVDPTTIDINI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ I+F     I   +  +++ ++ +  IS     SK    +F      K   P++ 
Sbjct: 301 HPTKTEIKFEEEHSIYALLKSAVKHSLGQFNISPILDFSKD--PTFDIPYNYKDKTPEFP 358

Query: 360 TSLTNTQEKLFLQE------------NRLSTNDLLPSDDPTYSEDNDPVEESEA------ 401
               +     F +E            N  S +   P+ +  Y+     +  S        
Sbjct: 359 KIEVDPNFNPFKEEYVSRSSGSDSHSNFGSYSKKAPTWESLYTGIESSINTSNPETIVSS 418

Query: 402 -----THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                     G     + + Y+I+    GL+I++ + AH+R++FE   +   ST   SQ 
Sbjct: 419 LFETEPTRSQGKKIIALAKKYLITTLEGGLIIININRAHQRILFEDFMKHLQSTHSASQQ 478

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           L+ P  +     E  ++ +  E     G        + I +  IP  L+   IP +  ++
Sbjct: 479 LMFPYELPFAPHELEVVAQLRELFECSGFMFT-IETDKIVVSGIPLHLTDSEIPNIFNEL 537

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYG-SIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           + + I+     + ++  +   A   C   ++++G+ +   E   L+  +           
Sbjct: 538 LQQHIE--ALPSTENTQKEAFAKALCKSLAVKTGQVLSEEEQETLINNLFSCQEVLISPF 595

Query: 576 GRPTFIKLKLSDIEKLF 592
           G+  +  L +++IE LF
Sbjct: 596 GKRIYYNLSVNEIENLF 612


>gi|225012742|ref|ZP_03703177.1| DNA mismatch repair protein MutL [Flavobacteria bacterium MS024-2A]
 gi|225003275|gb|EEG41250.1| DNA mismatch repair protein MutL [Flavobacteria bacterium MS024-2A]
          Length = 593

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 154/596 (25%), Positives = 277/596 (46%), Gaps = 14/596 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + + NQIAAGE+I+RP+  +KEL+EN++DA S  ++ ++   GK+  Q+ DNG 
Sbjct: 4   RISLLPDHVANQIAAGEVIQRPASVVKELLENAVDAGSDTIQLIVKDAGKTLVQVIDNGT 63

Query: 62  GMTSEEIPMAVQRHCTSK--ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM S +I +A +RH TSK  I++D   + T GFRGEAL SI A++H+   +R    +   
Sbjct: 64  GMNSTDIRLAFERHATSKINIAEDLFTLKTKGFRGEALASIAAIAHVETHTRVENEDVSH 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G ++          GT + V+ LF+ IPAR NFLKS+ VE   + D   R+A+A+
Sbjct: 124 CLKIEGSQVIEQTLSTQPKGTSIAVKSLFYNIPARRNFLKSDTVELRHVIDEFHRVALAH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F F    S  + +       N  +R+  + G    +  V + E ++   L G+   
Sbjct: 184 PEIKFLFFNNGSELFDLPS----SNLRKRLVAIFGNKLDSLLVPIEETTSLARLNGFVVK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  +    Q + F+N R ++  F+   +  A+   +  G  P   L LE+DP+ +D+N+
Sbjct: 240 PSHAKKTRGQQFFFVNNRFIRSPFLNHAVSAAFEGLLRPGFNPGYFLFLELDPKTIDINI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ ++F +   +   +  +I+ ++    +  +    +    +     A K  +P   
Sbjct: 300 HPTKTEVKFEDEQSLYAILRSTIKHSLGIFQVIPTLDFEQNQ--TMEVPYAFKNKVPTSP 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH----YQLGIACAQIHQ 415
               ++    F          +   +       + P EE  +TH            Q+  
Sbjct: 358 PIEVDSSFNPFKDSASNRKPKMEQWEGLYSGIQSLPTEEVSSTHSLVEVPQATRVFQLFS 417

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+      ++++DQ  AH+R+++E+      + K  SQ LL P  I+L   +      
Sbjct: 418 KYIVCPLRTSMLLIDQSRAHQRILYERFLSAITTKKGISQQLLFPLTIELNPQQEEQFKR 477

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E L  LG + +     +I +   P       I  ++  ++ E  D  +        + 
Sbjct: 478 SYEILEALGFEIKHI-EKSIEVMGAPEHCPPSKIESVIETLLLE-NDKESENQHFSYADQ 535

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           +  +MA   +IR G  ++  E +RLL +      ++     +  FI L+  +IE+ 
Sbjct: 536 VAKSMAQSLAIRPGETLKLEEQHRLLDDFFGCKETTVSPFNKQIFITLEKGEIEQK 591


>gi|315224170|ref|ZP_07866010.1| DNA mismatch repair protein MutL [Capnocytophaga ochracea F0287]
 gi|314945903|gb|EFS97912.1| DNA mismatch repair protein MutL [Capnocytophaga ochracea F0287]
          Length = 612

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/617 (26%), Positives = 293/617 (47%), Gaps = 36/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+ A+KEL+EN++DA ++ ++ +I   GK+  Q+ DNG G
Sbjct: 5   IKLLPDHVANQIAAGEVIQRPASAVKELMENAIDAGATEIKLLIKDAGKTLVQVIDNGVG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  MA +RH TSKI  + D  ++ T GFRGEAL SI A++H+ + ++ P++  G +
Sbjct: 65  MSTTDARMAFERHATSKIQKAQDLFHLQTKGFRGEALASIVAIAHVEMQTKRPEDELGTE 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P     GT + +++LFF IPAR NFLKS+ VE   I D   R+A+A+P
Sbjct: 125 IHIEGSKITRQEPCVCPTGTSIAMKNLFFNIPARRNFLKSDTVEFRHILDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI-TLQGYTGI 239
            + F      +  + +       NF +RI  + G       V +  +   +  + G+   
Sbjct: 185 AIHFFLYNNGNELFNLPAT----NFRQRIVHLFGSKTNEKLVPIIAEDTPLVQISGFIVK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +     N  ++ +N R V+++++   I +AY   I   +     + LE+DP  +D+N+
Sbjct: 241 PEYLAKTKNLQFLMVNHRFVKNQYLNHAIASAYEGLIHTDQKAEYFISLEVDPTTIDINI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ I+F     I   +  +++ ++ +  IS +   SK    +F      K   P++ 
Sbjct: 301 HPTKTEIKFEEEHSIYALLKSAVKHSLGQFNISPTLDFSKD--PTFDIPYNYKDKTPEFP 358

Query: 360 TSLTNTQEKLFLQE------------NRLSTNDLLPSDDPTYSEDNDPVEESEA------ 401
               +     F +E            N  S +   P+ +  Y+     +  S        
Sbjct: 359 KIEVDPNFNPFKEEYVSRSSGSDSHSNFGSYSKKAPTWESLYTGIESSINTSTPETIVSS 418

Query: 402 -----THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                     G     + + Y+I+    GL+I++ + AH+R+++E   +   ST   SQ 
Sbjct: 419 LFETEPTRSQGKKIIALAKKYLITTLEGGLIIININRAHQRILYEDFMKHLQSTHSASQQ 478

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           L+ P  +     E  +I +  E     G        + I +  IP  L+   IP +  ++
Sbjct: 479 LMFPYELPFAPHELEVIAQLRELFECSGFMFT-IETDKIVVSGIPLHLTDSEIPNIFNEL 537

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYG-SIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           + + I+     + ++  +   A   C   ++++G+ +   E   L+  +           
Sbjct: 538 LQQHIE--ALPSTENTQKEAFAKALCKSLAVKTGQVLSEEEQETLINNLFSCQEVLISPF 595

Query: 576 GRPTFIKLKLSDIEKLF 592
           G+  +  L +++IE LF
Sbjct: 596 GKRIYYNLSVNEIENLF 612


>gi|99034447|ref|ZP_01314447.1| hypothetical protein Wendoof_01000751 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 572

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/578 (36%), Positives = 321/578 (55%), Gaps = 27/578 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA S  +E  I  GG++   +TD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIEIKIERGGRNLIIVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+  + N   
Sbjct: 61  NGVEKNDLELAFMRHATSKLSDNELIEIKHLGFRGEALPSIAAVSRIKLSSKAREANEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I+   GEKI    P +++ GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SISYEGGEKIGEQTPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K+   +   +   R+ +V  E+F  N++E+NE+ + I L G+  
Sbjct: 181 NYHIGFTLTSGNK---KLLKYAKQTSLFHRLCEV-EEEFQGNSLEINEEEDGIKLTGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NRG + Q Y F+NGR ++D  ++  +R AY + IP  RYP   L LEI   QVDVN
Sbjct: 237 KPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK---KMISSFHQDNAPKTHL 355
           VHP KS +RF+N  +I   + + + KA++++  +  +   K    +   F + N  K   
Sbjct: 297 VHPNKSEVRFQNKKLIYEIMTRGLIKALSRRIGTFPAHDQKMDSTLPDPFDKPNVQKEFY 356

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT------------- 402
            K  +   N   K F   N  +      S    Y+       ++E               
Sbjct: 357 EKRPSPFKNQLIKEFASLNEKAKGLSEQSKSFDYTGIQKFPSQAETMVLEKKVLEQVDLI 416

Query: 403 -HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
             + LG A  Q++  YII++  D L+IVDQHAAHERL++E ++     + +  Q LL PE
Sbjct: 417 ESHPLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---QKSSVKRQKLLLPE 473

Query: 462 IIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            +++  +    +I  + + L  +G   E    N + ++EIPAIL   ++ ++L +I+D +
Sbjct: 474 TVEIKNQAGMEMIEIYKDKLFEMGFDIEIKPENKVIVKEIPAILGAIDVKEMLINIVDRL 533

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            +   T  ++D++  ILAT+ACYGSIR+GRKM+  EMN
Sbjct: 534 TEIEDTLPVEDKVNKILATIACYGSIRAGRKMRLEEMN 571


>gi|187250632|ref|YP_001875114.1| DNA mismatch repair protein MutL [Elusimicrobium minutum Pei191]
 gi|238058934|sp|B2KB18|MUTL_ELUMP RecName: Full=DNA mismatch repair protein mutL
 gi|186970792|gb|ACC97777.1| DNA mismatch repair protein MutL [Elusimicrobium minutum Pei191]
          Length = 608

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 162/612 (26%), Positives = 299/612 (48%), Gaps = 25/612 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E +  +IAAGE+IERP+  +KEL+EN++DA +  +   I G GK   ++ DNG 
Sbjct: 3   KIKILEESVAARIAAGEVIERPAGVLKELLENAVDAGADTINIDIDGAGKKLIRVNDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++V RH TSKI   +D  ++ TFGFRGEAL S+ AVS L++ S   +  +G 
Sbjct: 63  GMSKEDLTLSVVRHSTSKIKNFEDLDSLDTFGFRGEALYSVAAVSKLSISS-AEEGGSGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G K+ SV P     GT VEV+DLF+  PARL FLKS+  E +L+  V+   A+A 
Sbjct: 122 KIIVEGGKLISVSPSPNIKGTTVEVKDLFYNTPARLKFLKSDNYERSLLLKVVEESALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             VS+   T     Y     + +      +R  Q++G +   + + + ++      + + 
Sbjct: 182 LHVSYNVRTDGRLVYSFLASNGDFKKTVIQRAGQILGAEIAVSLISVEDE--RFGFKAFL 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
              +      +  + FIN R +  K +   +  AY    P  R+P  ++ + +     DV
Sbjct: 240 TPLSKLTAVRDLQFFFINKRPLTSKTLQQAVYKAYHGR-PKDRHPAFIVFMNMPAADFDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN------KKGISTSSVLSKKMISSFHQDNAP 351
           N+HP K  ++F     +  F++   Q+A+          I+ +S  +  M  SF +  A 
Sbjct: 299 NIHPQKRDVKFAQENAVFGFLMNVTQRALTGAAQPVDINITPASPPAATMEFSFAKPRAE 358

Query: 352 KTHLPKYATSLTN-------TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
           +     +  ++         +++ + +++     +      +P          ++ +   
Sbjct: 359 EPSYKPFGQNIVEENVFAPISKQAVVVKDFEDPVSYNPEPAEPKKEMGAHVQTDNPSWWQ 418

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                   +H++Y+I +T  GL++VDQHAA ER+++E+  +     ++  Q L+ P  +D
Sbjct: 419 GPYRFLGSLHKSYLIYETELGLMLVDQHAARERVLYEEYLKKMEENELGIQPLMFPVTVD 478

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS--KKNIPQLLRDIIDEIID 522
           L       +M   + L   G + E+F P  + +  +P I    + ++ + +  +   + D
Sbjct: 479 LPASNVENLMLWKDWLKTAGFEIEQFSPRTVLVNAVPNIFRFKEDSLKEFIVSLAGIVGD 538

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              +    +  +  +A +AC  SI++   +   E + LL ++++  +   C HGRP  + 
Sbjct: 539 PLKSSD--ELKKKTVAMLACKKSIKAKEDVSMAEADALLLDLKRCQDGMHCPHGRPVMVS 596

Query: 583 LKLSDIEKLFGR 594
           L  +++ K FGR
Sbjct: 597 LSAAELTKKFGR 608


>gi|295692268|ref|YP_003600878.1| DNA mismatch repair protein mutl [Lactobacillus crispatus ST1]
 gi|295030374|emb|CBL49853.1| DNA mismatch repair protein mutL [Lactobacillus crispatus ST1]
          Length = 641

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 173/646 (26%), Positives = 284/646 (43%), Gaps = 64/646 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI++  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKIANEHDLFKVSTLGFRGEALASISAVSHVEILTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + V+DLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 RANYSGGNKKGQEDAAARKGTKITVKDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +     N N  + ++ V G        +   K ++  + G    
Sbjct: 182 PHVSFTLSNTGKI---LLRTPGNNNLKQTVANVYGRHIAEKMEKFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP++VL +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNTAILDGYGSKLAARHYPIIVLAIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP K  +R      +   I  +I   + +K    S+  +                     
Sbjct: 299 HPTKQEVRLSKEKELGRLITSAISNTLVEKVEQISAFANLENKRDTLVDQLSFNLNQDVV 358

Query: 339 ---KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD--------- 386
              +K      +   PK    +   S  N Q +   Q++     DL    +         
Sbjct: 359 NTARKKEPEIREQEKPKFLTIESDDSEDNIQNEAVKQDSEKKYVDLNQPREDDQYIVTKT 418

Query: 387 --------------PTYSEDNDPVEESEATHYQLGIACAQIHQN--YIISQTTDGLVIVD 430
                         PT   + + +   + T          + Q   Y+ +Q    L ++D
Sbjct: 419 WKQNVALQQALTPFPTTRTNQEVISSGDETLANNLPRLVYVGQTDTYLFAQHNGDLFLID 478

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           Q AA  RL FE++     + K+  Q LLTP I++    +   I +  E + ++GI  E F
Sbjct: 479 QVAARRRLKFEQIFHMITAKKVVQQGLLTPIILEFGNLDFMQIKDQVEQIKQVGIYLEDF 538

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY---GSIR 547
           G N+  +R  P  +   N+   +R I+D  ++       ++    I A  A     G I+
Sbjct: 539 GQNSFIVRSYPTWIHD-NVEDSIRKILDGYLNVDKGKA-KNLFSRIAAMQAKREITGKIK 596

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
               + + E  ++L ++ K  +      GR   +++  +++ K+F 
Sbjct: 597 ----LSAAEAEQILLDLRKCTDPYHDADGRIILVRMSQNELRKMFK 638


>gi|296122089|ref|YP_003629867.1| DNA mismatch repair protein MutL [Planctomyces limnophilus DSM
           3776]
 gi|296014429|gb|ADG67668.1| DNA mismatch repair protein MutL [Planctomyces limnophilus DSM
           3776]
          Length = 692

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 174/690 (25%), Positives = 297/690 (43%), Gaps = 100/690 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS  ++N+IAAGE+IERP+  +KELIENS+D+ + RVE  I  GG  + ++TD+G 
Sbjct: 3   RIQQLSNSVVNKIAAGEVIERPASVVKELIENSIDSGALRVEVDIGAGGSEYIRVTDDGG 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +++I +AV  H TSKI   DD   I T GFRGEAL SI  VS L + SR P ++ G+
Sbjct: 63  GIHADDILLAVTTHATSKIRTADDLFQISTLGFRGEALASIAEVSQLRIRSRIPDSDVGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ++  +   V P     GT +E+R LF   P R  FLKS+  E   I++   R+A+A 
Sbjct: 123 ELVVNLGERGEVVPCGCATGTCIEIRQLFANTPVRRKFLKSDATEFGHISEQFTRIALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V           Y++          +R+    G       + ++ +  E+ L GY G 
Sbjct: 183 SHVHMVLRHNDKIVYELPA---TDRLIDRLEMFYGSAISEQLISIDHQLGEMRLWGYVGH 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  N+      ++F+NGR  QD+ I   +  AY   I + R+P+  L LE++P  VDVNV
Sbjct: 240 PAVNKATRKWQHLFLNGRWFQDRSIQHALSEAYRGLIMVQRHPICFLFLELNPADVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-------SSVLSKKMISSFHQDNAPK 352
           HP K  +RF++P  I   ++ S++       + +       +S +  +  +   ++ +  
Sbjct: 300 HPTKVEVRFQDPQSIYRLMLSSLRNRFLGMDLDSKLKVPAEASTVDPQEQNEIQKEFSQW 359

Query: 353 THLPKYATS--------------LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                + T+                N    L L    L  +   P         N    E
Sbjct: 360 AKTELFKTAEIAGSPLMVGSTIGSANANSPLSLLSPNLPDSATSPWSSEIAPGLNRFETE 419

Query: 399 SEATHYQLGIACAQIH--QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS------- 449
           +           ++++   ++     ++    +D     E    E+ ++  +        
Sbjct: 420 NLEWSATTHRTVSRVNSPSHFDHVAHSESTDGMDTPEVEEAAFAEQPQKSDHELDSSQAR 479

Query: 450 ---------------------TKITSQTLLTPEIIDLLEGECALIMEHD-------EDLH 481
                                  + +  +    ++        +I +H        E+  
Sbjct: 480 EISELPHAAGSQNHHFSTQFLEGVRALQIHDCYLVVETPEGMTVIDQHALHERILYEEFR 539

Query: 482 R-------------------LGI------------------KAERFGPNAIAIREIPAIL 504
           R                   LG                   +   FG   I +   PA+L
Sbjct: 540 RRVHSKAMESQRLLIPVPIALGFRGSSLLLDCREALDQLGFEICEFGQGTILLSAYPAML 599

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            K N  QLLRD+ +++  SS     +D ++ +L  MAC  +++SG+K+   E+  LLR+ 
Sbjct: 600 GKLNQEQLLRDLAEQLESSSLESAHRDILDELLNMMACKAAVKSGQKLSQEEIEELLRQR 659

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               ++  C HGRPT + L  S++++ FGR
Sbjct: 660 HLVADAHHCPHGRPTALNLSRSELDRQFGR 689


>gi|227877608|ref|ZP_03995662.1| DNA mismatch repair protein MutL [Lactobacillus crispatus JV-V01]
 gi|256844549|ref|ZP_05550035.1| DNA mismatch repair protein MutL [Lactobacillus crispatus
           125-2-CHN]
 gi|256849062|ref|ZP_05554495.1| DNA mismatch repair protein mutL [Lactobacillus crispatus MV-1A-US]
 gi|262047544|ref|ZP_06020499.1| DNA mismatch repair protein MutL [Lactobacillus crispatus MV-3A-US]
 gi|312977891|ref|ZP_07789637.1| DNA mismatch repair protein HexB [Lactobacillus crispatus CTV-05]
 gi|227862802|gb|EEJ70267.1| DNA mismatch repair protein MutL [Lactobacillus crispatus JV-V01]
 gi|256613627|gb|EEU18830.1| DNA mismatch repair protein MutL [Lactobacillus crispatus
           125-2-CHN]
 gi|256713838|gb|EEU28826.1| DNA mismatch repair protein mutL [Lactobacillus crispatus MV-1A-US]
 gi|260572120|gb|EEX28685.1| DNA mismatch repair protein MutL [Lactobacillus crispatus MV-3A-US]
 gi|310895198|gb|EFQ44266.1| DNA mismatch repair protein HexB [Lactobacillus crispatus CTV-05]
          Length = 641

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/646 (26%), Positives = 284/646 (43%), Gaps = 64/646 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI++  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKIANEHDLFKVSTLGFRGEALASISAVSHVEILTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + V+DLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 RANYSGGNKKGQEDAAARKGTKITVKDLFFNTPARLKYLRSSRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +     N N  + ++ V G        +   K ++  + G    
Sbjct: 182 PHVSFTLSNTGKI---LLRTPGNNNLKQTVANVYGRHIAEKMEKFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP++VL +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNTAILDGYGSKLAARHYPIIVLAIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP K  +R      +   I  +I   + +K    S+  +                     
Sbjct: 299 HPTKQEVRLSKEKELGRLITSAISNTLVEKVGQISAFANLENKRDTLVDQLSFNLNQDVV 358

Query: 339 ---KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD--------- 386
              +K      +   PK    +   S  N Q +   Q++     DL    +         
Sbjct: 359 NTARKKEPEIREQEKPKFLTIESDDSEDNIQNEAVKQDSEKKYVDLNQPREDDQYIVTKT 418

Query: 387 --------------PTYSEDNDPVEESEATHYQLGIACAQIHQN--YIISQTTDGLVIVD 430
                         PT   + + +   + T          + Q   Y+ +Q    L ++D
Sbjct: 419 WKQNVALQQALTPFPTTRTNQEVISSGDETLANNLPRLVYVGQTDTYLFAQHNGDLFLID 478

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           Q AA  RL FE++     + K+  Q LLTP I++    +   I +  E + ++GI  E F
Sbjct: 479 QVAARRRLKFEQIFHMITAKKVVQQGLLTPIILEFGNLDFMQIKDQVEQIKQVGIYLEDF 538

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY---GSIR 547
           G N+  +R  P  +   N+   +R I+D  ++       ++    I A  A     G I+
Sbjct: 539 GQNSFIVRSYPTWIHD-NVEDSIRKILDGYLNVDKGKA-KNLFSRIAAMQAKREITGKIK 596

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
               + + E  ++L ++ K  +      GR   +++  +++ K+F 
Sbjct: 597 ----LSAAEAEQILLDLRKCTDPYHDADGRIILVRMSQNELRKMFK 638


>gi|188995419|ref|YP_001929671.1| DNA mismatch repair protein MutL [Porphyromonas gingivalis ATCC
           33277]
 gi|238689263|sp|B2RL29|MUTL_PORG3 RecName: Full=DNA mismatch repair protein mutL
 gi|188595099|dbj|BAG34074.1| DNA mismatch repair protein MutL [Porphyromonas gingivalis ATCC
           33277]
          Length = 618

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/621 (25%), Positives = 295/621 (47%), Gaps = 37/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + I NQIAAGE+I+RP+  +KEL+EN+LDA +S +   +   G+   ++TDNG G
Sbjct: 5   IRLLPDSIANQIAAGEVIQRPASVVKELLENALDAGASIIRLDVREAGRELIRVTDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI+   D  ++ T GFRGEAL SI AV+ + L++R  ++  G +
Sbjct: 65  MSQSDARMAFERHATSKIASFQDLFSLRTMGFRGEALASIAAVAQVELLTRRAEDELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++  V  V    G I+ V++LF+ +PAR  FLKS + E   I     R+A+  P
Sbjct: 125 LTINGSEVGEVATVTSPQGCILCVKNLFYNVPARRKFLKSNETEFRHILTEYERVALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+          +          +RI  V G+    + + +  KS    + G+ G P
Sbjct: 185 QVAFSIYHSGELVQDLPPSP----LKKRILDVFGKRMEKDLIPIGIKSPITNISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY   IP G  P   L  +++P Q+DVN+H
Sbjct: 241 DGARKRGALQYFFVNGRFMRHPYFHKAVMAAYEAIIPQGTMPNYFLYFDLEPSQIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F +   I   I   I++A++      +    +K +        P  ++ +   
Sbjct: 301 PTKTEIKFSDEQAIFKLIGVVIREALSSSNAVPAIDFDRKELIDIPAYQGPGKNVVRPPV 360

Query: 361 SLTNTQEKL-------FLQENRLSTNDLLPSDDPTYSEDNDPVEE--------------- 398
            L  +            ++ +R  + D+  ++     E     E+               
Sbjct: 361 DLDPSYNPFKETGLTEPIRSSRRQSPDMGWNELFKQFEAKRDAEKMAEPPIRSEGLFAST 420

Query: 399 ----SEATHYQLGIACAQIHQ-NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
               S  +          +H+  Y+++  + GL +VD H AH+R+++++   D +   I 
Sbjct: 421 DFTPSAVSATPSTDMLCYVHRGRYLVTTLSRGLALVDFHRAHKRILYDRFMADESRRHIE 480

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL PE+++    + + +    ++L  +G      G ++ ++   P  +       ++
Sbjct: 481 QQQLLFPELLEFNPSDASAVKAAVDELQSVGFDLSPLGVSSYSLLAAPVQIID-CAADVV 539

Query: 514 RDIIDEIIDSSTTYTLQDRIENILAT-MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           RD+I   ++   +    +++  ++AT +A Y +I  G+   + E + LL E+  + +S+ 
Sbjct: 540 RDVIHTTLEDGRSSH--EQMLELIATQIAEYQAIPCGKTPTAEEASDLLAELFASNDSTY 597

Query: 573 CNHGRPTFIKLKLSDIEKLFG 593
              G+     ++ +DI + F 
Sbjct: 598 TPDGKLIVSIIEEADIARRFE 618


>gi|227894651|ref|ZP_04012456.1| DNA mismatch repair protein [Lactobacillus ultunensis DSM 16047]
 gi|227863546|gb|EEJ70967.1| DNA mismatch repair protein [Lactobacillus ultunensis DSM 16047]
          Length = 636

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/640 (27%), Positives = 292/640 (45%), Gaps = 57/640 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRIDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKISNEHDLFKVATLGFRGEALASISAVSHVEILTATEGA-IGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + VRDLFF  PARL +L+S + E   I D+I R+A+ Y
Sbjct: 122 RATFSGGNKKGQEDAAARKGTKITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSFT S        +   + NGN  + ++ V G          + K N+  + G    
Sbjct: 182 PQVSFTLSNTGKI---LLRTTGNGNLKQTVANVYGRHIAEGMENFSTKDNDFKVSGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP+VV+ +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNTAIMDGYGSKLTARHYPIVVVSIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----------------LSKKMI 342
           HP K  +R      +   I  +I  A+ +K   T +                  L++ ++
Sbjct: 299 HPTKQEVRLSKEKELSRLITTAISNALVEKVEQTDAFANLENKRETLVDQLQLNLNQDVV 358

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS-------------------TNDLLP 383
           ++  +              LT   E+    E +                     T D   
Sbjct: 359 NTARKKIPEVHDQADKPEFLTTKPEENKATETKSDAQYVDLNKPREDDKYIITKTWDQNV 418

Query: 384 SDDPTYSEDNDPVEESEATHY------QLGIACAQIHQ--NYIISQTTDGLVIVDQHAAH 435
           S     +  +  V + E                A + Q   YII++    L ++DQ AA 
Sbjct: 419 SRQQQLTPFSSSVADQEVISNGDETLANNLPRLAYVGQTDTYIIAENNGDLFLIDQVAAR 478

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
            RL FEK  Q   + KI  Q LLTP +++    +   I +  + + ++GI  E FG N+ 
Sbjct: 479 RRLQFEKTYQMIAAKKIVQQGLLTPIVLEFGNLDFIQIKDKIDQIKQIGIHLEDFGQNSF 538

Query: 496 AIREIPAILSKKNIPQLLRDIIDEI--IDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
            +R  P  + + N+ + +R I+D    +D   +  L  R+  + A      +I+   ++ 
Sbjct: 539 IVRSYPTWI-QNNVEETIRQILDGYLNLDKGKSNNLFKRVAALEA----KKAIKGKIQLS 593

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + E  ++L ++ K  +      GR   +++  +++ K+F 
Sbjct: 594 AAEAKQILTDLRKTTDPYHDASGRIILVRMSQNELRKMFK 633


>gi|307132706|ref|YP_003884722.1| methyl-directed mismatch repair protein [Dickeya dadantii 3937]
 gi|306530235|gb|ADN00166.1| methyl-directed mismatch repair protein [Dickeya dadantii 3937]
          Length = 646

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/633 (26%), Positives = 281/633 (44%), Gaps = 72/633 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   ++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIGKADLALALARHATSKIATLDDLEAIVSLGFRGEALASISSVSRLTLTSRTDAQEEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +V+P A   GT +EV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFMHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +    S       R+  + G  F+ +A+ ++ +  ++ + G+ 
Sbjct: 181 ARFDVAITLHHNGKLIRQYRAVSDPAQRERRLGSICGAAFLQHALAVSWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPAGSRQLPEMQYCYVNQRMMRDRLINHAIRQAYQDQLRDEQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-------------KGISTSSVLSKKMISS 344
           NVHPAK  +RF    ++ +FI Q++   + +                           + 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMTVLQQAASPGLTGAGETPMATWQPENRMAAGENQ 360

Query: 345 FHQDNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES--- 399
           F +   P    P+ A+S +  +  E    +E + +  +               +      
Sbjct: 361 FARPAEPTPETPRAASSGSAGRHVESHHSRERQPARTETAGYQKKQGELYQQFLHTESSR 420

Query: 400 -------------------------------------EATHYQLGIACAQIHQNYIISQT 422
                                                E+    LG        +Y + + 
Sbjct: 421 QQTVAREAPPVKDAPTTQRDTQRDMTEKTAAVGEVPLESHALGLGRVLTVYPPSYALVEY 480

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
             GL ++    A   L   ++     S  +  Q LL P+ + L   E A++ +    L R
Sbjct: 481 QQGLALLSLTVAERYLRQAQLTPLAASEGLRPQPLLIPQRLTLNPSELAVMQQQQPLLTR 540

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
           +GI+ E   P A  +R +P  L ++N+  L+ D++  + DS          + + A +A 
Sbjct: 541 MGIEVELAPPRA-TLRAVPLPLRQQNLQNLISDLLGYLADSHDAKP-----DAVAAWIAG 594

Query: 543 Y-GSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
             GS R    +   +  ++L ++E+      C 
Sbjct: 595 RLGSERENWTL--AQAVQVLSDVERL-----CP 620


>gi|261880048|ref|ZP_06006475.1| DNA mismatch repair protein MutL [Prevotella bergensis DSM 17361]
 gi|270333288|gb|EFA44074.1| DNA mismatch repair protein MutL [Prevotella bergensis DSM 17361]
          Length = 619

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/620 (27%), Positives = 305/620 (49%), Gaps = 34/620 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  +KEL+EN++DA++  V  ++   G++  Q+ D+G G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVVKELMENAVDADARHVNVLVVDAGRTSIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  N+HT GFRGEAL S+ AV+H+ L +R      G Q
Sbjct: 65  MSETDARLSFERHATSKIRKPDDLFNLHTMGFRGEALASVAAVAHVELRTRTEHEEIGTQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G + S   P A   G+  ++ +LF+ +PAR  FLKS   E N I +   R+ + YP
Sbjct: 125 LTIAGSRFSGQEPCACPVGSNFKIENLFYNVPARRKFLKSNATELNHIINAFERIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+FTF +  S  Y +      G   +RI  V G+    + + +N +++   LQG+ G P
Sbjct: 185 EVTFTFHSNGSEMYNLRA----GGLRQRILDVFGKRVNQDLLPVNVETSLCGLQGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R      Y F+NGR ++  +  + + TA+   IP G      L  ++DP+ +DVN+H
Sbjct: 241 ESSRKKGAHQYFFVNGRYMRHPYFHNAVMTAFERLIPQGTQVPYFLYFDVDPKDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQDN 349
           P K+ I+F N   I   ++ S++ A+ +    +             V + +  +   Q N
Sbjct: 301 PTKTEIKFENEQAIWQILMASVKDALGRFNDVSVIDFDTEGKPDIPVYNSQTEAQLPQMN 360

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
               + P ++T  +  +    +Q  + S           + E  + ++  EA  ++    
Sbjct: 361 LNPQYNPFHSTIESGEKLSGKMQHTQGSREFTRSEIPDQWQELYNGLQPEEAPAHETLFT 420

Query: 410 ----------------CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                             Q    YI++    GL+IVDQH AH R++FE+ ++  ++ K+ 
Sbjct: 421 ESGEGEKSLIADKSPSHYQYKGRYIMTAVKSGLMIVDQHRAHIRILFEQYQKQLSARKMH 480

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ +L PE I L   E + +    E+   +G +    G    A+  +P  +   ++ +L+
Sbjct: 481 SQKMLFPETIQLSAREESTLSTVYEEFAAMGFELSNLGGGTYALNAVPEGIEGVDVLRLV 540

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            +++    + S T    +   ++  ++A   +I  G+ + + EM  ++  +    N +  
Sbjct: 541 HEMLLS-AEESGTPAAHEINNSLALSLARAAAIPYGQVLSNDEMENVINGLFLCSNVNYT 599

Query: 574 NHGRPTFIKLKLSDIEKLFG 593
             G+     LK  +IE++  
Sbjct: 600 PDGKNILYILKQVEIEQMLK 619


>gi|293381578|ref|ZP_06627565.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus crispatus 214-1]
 gi|290921848|gb|EFD98863.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus crispatus 214-1]
          Length = 641

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 173/646 (26%), Positives = 284/646 (43%), Gaps = 64/646 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFVDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI++  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKIANEHDLFKVSTLGFRGEALASISAVSHVEILTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + V+DLFF  PARL +L+S + E     D+I R+A+ Y
Sbjct: 122 RANYSGGNKKGQEDAAARKGTKITVKDLFFNTPARLKYLRSPRTEIMKTVDIINRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +     N N  + I+ V G        +   K ++  + G    
Sbjct: 182 PHVSFTLSNTGKI---LLRTPGNNNLKQTIANVYGRHIAEKMEKFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP++VL +++DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNTAILDGYGSKLAARHYPIIVLAIKVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS--------------------- 338
           HP K  +R      +   I  +I   + +K    S+  +                     
Sbjct: 299 HPTKQEVRLSKEKELGRLITSAISNTLVEKVEQISAFANLENKRDTLVDQLSFNLNQDVV 358

Query: 339 ---KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD--------- 386
              +K      +   PK    +   S  N Q +   Q++     DL    +         
Sbjct: 359 NTARKKEPEIREQEKPKFLTTESDDSEDNIQNEAVKQDSEKKYVDLNQPREDDQYIVTKT 418

Query: 387 --------------PTYSEDNDPVEESEATHYQLGIACAQIHQN--YIISQTTDGLVIVD 430
                         PT   + + +   + T          + Q   Y+++Q    L ++D
Sbjct: 419 WKQNVALQQALTPFPTTRTNQEVISSGDETLANNLPRLVYVGQTDTYLLAQHNGDLFLID 478

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           Q AA  RL FE++     + K+  Q LLTP I++    +   I +  E + ++GI  E F
Sbjct: 479 QVAARRRLKFEQIFHMITAKKVVQQGLLTPIILEFGNLDFMQIKDQVEQIKQVGIYLEDF 538

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY---GSIR 547
           G N+  +R  P  +   N+   +R I+D  ++       ++    I A  A     G I+
Sbjct: 539 GQNSFIVRSYPTWIHD-NVEDSIRKILDGYLNVDKGKA-KNLFSRIAAMQAKREITGKIK 596

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
               + + E  ++L ++ K  +      GR   +++  +++ K+F 
Sbjct: 597 ----LSAAEAEQILLDLRKCTDPYHDADGRIILVRMSQNELRKMFK 638


>gi|212550998|ref|YP_002309315.1| DNA mismatch repair protein MutL [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549236|dbj|BAG83904.1| DNA mismatch repair protein MutL [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 582

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/592 (27%), Positives = 286/592 (48%), Gaps = 16/592 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KELIEN++DA +  ++ +I   G+S  Q+ DNG G
Sbjct: 4   IHLLPDSIANQIAAGEVIQRPASVVKELIENAVDAAADNIQIIIKDAGRSLIQVIDNGQG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI    D   + T GFRGEAL SI AV+ + L +R  ++  G  
Sbjct: 64  MSKTDARLSFERHATSKIHSAKDLFALRTMGFRGEALASIAAVAQVELKTRRKEDEIGIF 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I IS  K+     VA++ G+   V++LF+ IPAR  FLKS ++E   I     R+A+  P
Sbjct: 124 IRISASKVEKQETVAIHSGSSFSVKNLFYNIPARRKFLKSNEIEFKNILVEFERVALVNP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT          +       N  +RI+ ++G     N + +N  ++ I + G+  +P
Sbjct: 184 QITFTLRHNSREIISLPI----SNLKQRITNLMGGKIAQNLLPININTSFIQIYGFISVP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T ++      Y F NGR ++  +    +  A+   IP+G +P   L ++IDP  +D+N+H
Sbjct: 240 TASKKRGALQYFFANGRYMRHAYFHRAVILAFEPFIPIGDHPNYFLYIKIDPASIDINIH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N  ++   I  ++++AI    +         + S   ++      + +  +
Sbjct: 300 PTKTEIKFENEQMLFQIIFSAVKEAIAVPTLEFDQEKVIDIPSYRGKEIQITPPIIQMYS 359

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                 +K   + ++++            ++ N+    +E                Y+I 
Sbjct: 360 DYNPFSDKYVYENSQIN-----WKQSCLKNQTNNTEGTAERIKTTYLQYKG----KYLIL 410

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
               G++ +DQ  AH R++F+   +  N  +  SQ LL PE I     E  ++    +DL
Sbjct: 411 SLKSGIIFIDQRRAHIRILFDDYIKRINHKQGISQRLLFPEKISFTPKEITILPYILDDL 470

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
             +G   +  G N  +I  IPA     +I   L++IID+I+ +S     ++  E+++  +
Sbjct: 471 AFIGFDLKDLGNNIYSINGIPAGSENIDIIATLQEIIDKILTTSC-EIKEEITESLILVL 529

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           A   +I  G      E++ L+  +  + +      G+     L   ++ K F
Sbjct: 530 AQKTAINYGNFFSEEEIHTLIARLFSSTSPKYTPDGKLIIFMLSEEELNKRF 581


>gi|34540235|ref|NP_904714.1| DNA mismatch repair protein MutL [Porphyromonas gingivalis W83]
 gi|81833818|sp|Q7MX15|MUTL_PORGI RecName: Full=DNA mismatch repair protein mutL
 gi|34396547|gb|AAQ65613.1| DNA mismatch repair protein MutL [Porphyromonas gingivalis W83]
          Length = 618

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/621 (25%), Positives = 294/621 (47%), Gaps = 37/621 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + I NQIAAGE+I+RP+  +KEL+EN+LDA +S +   +   G+   ++TDNG G
Sbjct: 5   IRLLPDSIANQIAAGEVIQRPASVVKELLENALDAGASIIRLDVREAGRELIRVTDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI+   D  ++ T GFRGEAL SI AV+ + L++R  ++  G +
Sbjct: 65  MSQSDARMAFERHATSKIASFQDLFSLRTMGFRGEALASIAAVAQVELLTRRAEDELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++  V  V    G I+ V++LF+ +PAR  FLKS + E   I     R+A+  P
Sbjct: 125 LTINGSEVGEVATVTSPLGCILCVKNLFYNVPARRKFLKSNETEFRHILTEYERVALVNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+          +          +RI  V G+    + + +  KS    + G+ G P
Sbjct: 185 QVAFSIYHSGELVQDLPPSP----LKKRILDVFGKRMEKDLIPIGMKSPITNISGFVGRP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY   IP G  P   L  +++P Q+DVN+H
Sbjct: 241 DGARKRGALQYFFVNGRFMRHPYFHKAVMAAYEAIIPQGTMPNYFLYFDLEPSQIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F +   I   I   I++A++      +    +K +        P  ++ +   
Sbjct: 301 PTKTEIKFSDEQAIFKLIGVVIREALSSSNAVPAIDFDRKELIDIPAYQGPGKNVVRPPV 360

Query: 361 SLTNTQEKL-------FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI----- 408
            L  +            ++ +R  + D+  ++     E     E+      +        
Sbjct: 361 DLDPSYNPFKETGLTEPIRSSRRQSPDMGWNELFKQFEAKRDAEKMAEPPIRSEELFAST 420

Query: 409 --------------ACAQIHQ-NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                             +H+  Y+++  + GL +VD H AH+R+++++   D +   I 
Sbjct: 421 DFTPSAVSATPSTDMLCYVHRGRYLVTTLSRGLALVDFHRAHKRILYDRFMADESRRHIE 480

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL PE+++    + + +    ++L  +G      G ++ ++   P  +       ++
Sbjct: 481 QQQLLFPELLEFNPSDASAVKAAVDELQSVGFDLSPLGVSSYSLLAAPVQIID-CAADVV 539

Query: 514 RDIIDEIIDSSTTYTLQDRIENILAT-MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           RD+I   ++   +    +++  ++AT +A Y +I  G+   + E + LL E+  + +S+ 
Sbjct: 540 RDVIHTTLEDGRSSH--EQMLELIATQIAEYQAIPCGKTPTAEEASDLLAELFASNDSTY 597

Query: 573 CNHGRPTFIKLKLSDIEKLFG 593
              G+     ++ +DI + F 
Sbjct: 598 TPDGKLIVSIIEEADIARRFE 618


>gi|317152531|ref|YP_004120579.1| DNA mismatch repair protein MutL [Desulfovibrio aespoeensis Aspo-2]
 gi|316942782|gb|ADU61833.1| DNA mismatch repair protein MutL [Desulfovibrio aespoeensis Aspo-2]
          Length = 641

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 179/654 (27%), Positives = 280/654 (42%), Gaps = 74/654 (11%)

Query: 1   MK----IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQI 56
           M     IR L   + NQIAAGE++ERPS  +KEL+ENSLDA ++RV+  +  GG+    +
Sbjct: 1   MPDTHEIRVLPPGLKNQIAAGEVVERPSSVVKELVENSLDAGATRVDVTVEQGGRGLIVV 60

Query: 57  TDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            DNG G+ + ++ +AV RH TSK+   +D S I +FGFRGEALPSI +VS  T++SR   
Sbjct: 61  QDNGRGIAAAQLELAVTRHATSKLRTFEDLSAIASFGFRGEALPSIASVSRFTMISREQG 120

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
               A I + G +++  R  A+  GT VEVR+LF   PARL FLK+E  E     D + R
Sbjct: 121 AADAAFIEVRGGEVAGRRIAALAAGTRVEVRELFANTPARLKFLKAESTENKRCQDTLMR 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+A+P   F+ +      +++     + +   R+               + +       
Sbjct: 181 IALAHPGCGFSLTVNGREVFRLPA---DQDLATRLRTFWPPSACEGLGPFDFERLGYRAH 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G  G P   +   ++  +++NGR VQDK +L  +R AY   +    YP  VL LE+   +
Sbjct: 238 GVAGSPAMAQSRGDRILLYVNGRPVQDKLMLGAVRQAYKGMLLSREYPQAVLFLELPRDE 297

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN--------------------------- 327
           VDVNVHPAK  +RF   + + + I   I +A+                            
Sbjct: 298 VDVNVHPAKLEVRFIEESRVFSTIRGGIVQALAVLTDQGRGYLGPDSGPDSDQRDRRDVS 357

Query: 328 ---------KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT-QEKLFLQENRLS 377
                      G  + S        SF ++        +YA   +      L      L+
Sbjct: 358 GAYRQDDRPDYGHRSPSGPVGHDAPSFRENGQKFPSYREYAAFASRPVPMDLGPGRGGLA 417

Query: 378 TNDLLPSDDPTYSEDN---------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
             D   +   +   D                        +   Q+   Y++ +    LV+
Sbjct: 418 GADPDHAPGYSSEPDPGLDPARFNVTDAARPAPLAGTDYVYLGQVADTYLVLRRGQSLVL 477

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           VDQHAAHER++   MR++       SQ L  P  +DL   E   +    + L  +G   E
Sbjct: 478 VDQHAAHERVLLAAMRRERTRG--DSQPLALPLEMDLHPSEAETLDGLRDGLRAMGFILE 535

Query: 489 --RFGP------NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
               G       + + +R IP  L      +           +         ++++   M
Sbjct: 536 TREAGESGASAAHRLLVRGIPPTLDTGRARE---------YLADALAARARTLDDLWTMM 586

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C  +I++G+ +   E   LL    + P    C HGRP  +     ++EKLF R
Sbjct: 587 SCKTAIKAGQPLAVDEALALLDVWLRTPEREYCPHGRPVVVSWNPQELEKLFKR 640


>gi|251772665|gb|EES53229.1| DNA mismatch repair protein MutL [Leptospirillum ferrodiazotrophum]
          Length = 643

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 162/645 (25%), Positives = 274/645 (42%), Gaps = 60/645 (9%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
              ++NQIAAGE+IERPS  +KEL+ENSLDA + RV  V+   G    ++ DNG G+  +
Sbjct: 2   PAALVNQIAAGEVIERPSSVLKELLENSLDAGAKRVSVVVDLTGDGLIRVEDNGSGIMKD 61

Query: 67  EIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
           ++P+A  RH TSKIS  DD     + GFRGEAL SI +V+ +TL +R   +  G+++   
Sbjct: 62  DLPLAFLRHATSKISSFDDLVRARSMGFRGEALASIASVARVTLETRHQSDAVGSRLEWV 121

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
             +   + P     GT + VRDLFF +P R  +L+S Q E   +T+  +R+A+ +P V  
Sbjct: 122 PGEDPLISPWDRPVGTAISVRDLFFNVPVRKKYLRSPQTELGHLTEAFQRVALGFPDVHL 181

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
             ST     + +  + T      RI  +       + +       ++ +          R
Sbjct: 182 ELSTPSRKIFSLPARHTP---LLRILDLYPTFQEEDLLYHERGGEDLRISLVLLRADRLR 238

Query: 245 GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKS 304
            +    ++F+N R ++   +   I    +  I    +P   + L++ P ++DVNVHP K 
Sbjct: 239 KDRQFQHLFVNRRWIRHPALFEAITQGASGRISRDLHPGAWVYLDLPPDRLDVNVHPTKR 298

Query: 305 YIRFRNPTIIRNFIIQSIQKA-----------------------------INKKGISTSS 335
            +R  +   I + + + I +A                             +  +     +
Sbjct: 299 EVRLLDGDRIFSLLRRVISEAFEGFSEKIFLEQPSSDSSRPYSSSPLPDPLGTRESLPET 358

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATS------------------------LTNTQEKLFL 371
             ++   S F ++       P  +                                 LFL
Sbjct: 359 EDNRPDSSLFSKEGKTSWTPPPRSAPRGMAPDLPPSDNASDPRATTPPPYRAGAPSPLFL 418

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
           QE + +       + P   +    V        +      Q    Y+++   + L +VD 
Sbjct: 419 QERKEAGPRPSFREIPELLKSLPSVFSGNRPDPETISVVGQWVGTYLVAFAGEDLWLVDW 478

Query: 432 HAAHERLIFEKMRQD--FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           H AHER+ +++ RQ    +      +TLL P    +       +    E+L  LG   +R
Sbjct: 479 HTAHERINYDRYRQALLGDGKGGGRRTLLFPVSYRVAPSVADNLDSRLEELSHLGFDIDR 538

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
            GP+   IR +P +L + +  + L ++              DRI+  L T++C+ S+R  
Sbjct: 539 SGPDLFRIRSVPTLLDESDPTRALDELGAHSQGFEVPILRSDRIDETLMTLSCHRSVRRN 598

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               + E  RL+RE+  + +   C HGRPT + L  S I+  FGR
Sbjct: 599 DVFGTEEGARLIRELLDSDHPYSCPHGRPTILSLSHSAIDTWFGR 643


>gi|161506973|ref|YP_001576927.1| DNA mismatch repair protein [Lactobacillus helveticus DPC 4571]
 gi|172048183|sp|A8YTI0|MUTL_LACH4 RecName: Full=DNA mismatch repair protein mutL
 gi|160347962|gb|ABX26636.1| DNA mismatch repair protein [Lactobacillus helveticus DPC 4571]
          Length = 636

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 290/639 (45%), Gaps = 55/639 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFIDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEIVTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + VRDLFF  PARL +L+S + E   I D+I R+++ Y
Sbjct: 122 KADFSGGSKKGQEDAASQKGTKITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLSLGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +   + NGN  + ++ V G            K ++  + G    
Sbjct: 182 PHVSFTLSNTGK---VLFRTTGNGNLKQTVANVYGRHIAEKMESFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP+VV+ + +DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNNAIMDGYGSKLAARHYPIVVITIHVDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------SVLSKKMISSFHQD-- 348
           HP K  +R      +   I  +I  A+  K   +S           L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITDAISDALLDKTEQSSGFANLENKRETLVDQLEFNLNQDVV 358

Query: 349 ----NAPKTHLPKYATSLTNTQEKLFLQENRLSTND------------------------ 380
                 P+ H           QE    +E +  T                          
Sbjct: 359 NTTRKTPEVHEEAEKPEFLVKQEAKNSEEPKNETEHNYVDINIPREDDQYIITKTWDKNV 418

Query: 381 ------LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                 +  S+     E     +E+ A +        +I   Y++++    L ++DQ AA
Sbjct: 419 ALQQKLMPFSNKKVDQEVISTGDETLANNLPRLAYVGKIDT-YLLAENDGDLYLIDQVAA 477

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
             RL FE++ Q   S KI  Q LLTP +++    +   I +    + +LGI  + FG N+
Sbjct: 478 RRRLQFEQIYQTITSKKIVQQGLLTPIVLEFGNLDFLQIKDKIYQIKQLGIYLDEFGQNS 537

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             +R  P  +   ++ + +R+I+D  ++     T Q+  + + A  A   S++    + +
Sbjct: 538 FIVRSYPTWIHD-HVEESIREILDNYLNLDKGKT-QNLFKRVAALEAKR-SVKGKINLSA 594

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            E  +++ ++ K  +      GR   +++  +++ K+F 
Sbjct: 595 AEGTQIITDLRKTSDPYHDADGRLILVRISQNELRKMFK 633


>gi|213964245|ref|ZP_03392477.1| DNA mismatch repair protein MutL [Capnocytophaga sputigena Capno]
 gi|213953106|gb|EEB64456.1| DNA mismatch repair protein MutL [Capnocytophaga sputigena Capno]
          Length = 612

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 155/615 (25%), Positives = 287/615 (46%), Gaps = 35/615 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+ A+KEL+EN++DA ++ ++ +I   GK+  Q+ DNG G
Sbjct: 5   IRLLPDHVANQIAAGEVIQRPASAVKELMENAIDARATEIKLLIKDAGKTLVQVIDNGVG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  MA +RH TSKI  ++D  ++ T GFRGEAL SI A++H+ + ++ P++  G +
Sbjct: 65  MSTTDARMAFERHATSKIQKAEDLFHLQTKGFRGEALASIVAIAHVEMQTKRPEDELGTE 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P     GT + +++LFF IPAR NFLKS+ VE   I D   R+A+A+P
Sbjct: 125 IHIEGSKITRQEPCVCPTGTSIAMKNLFFNIPARRNFLKSDTVEFRHILDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI-TLQGYTGI 239
            + F      +  + +       NF +RI  + G       V +  +   +  + G+   
Sbjct: 185 AIHFYLYNNGNELFNLPAT----NFRQRIVHLFGGKTNEKLVPIIAEDTPLVKISGFIVK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +     N  ++ +N R V+++++   I  AY   I   + P   + LE+DP  +D+N+
Sbjct: 241 PEYLAKTKNLQFLMVNHRFVKNQYLNHAITAAYEGLIHADQKPEYFISLEVDPATIDINI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ I+F     I   +  +++ ++ +  I+ +   SK    +F      K   P++ 
Sbjct: 301 HPTKTEIKFEEEHSIYALLKSAVKHSLGQFNIAPTLDFSKD--PTFDIPYNYKDKAPEFP 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--------------------- 398
               +     F +E    ++    S+   Y +     E                      
Sbjct: 359 RIQVDPNFNPFKEEYESRSSSRSSSNFGNYPKKTASWESLYMGIESAVDTSASETIVSSL 418

Query: 399 -SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                    G     + + Y+++     L+I++ + AH+R++FE   ++  S+    Q L
Sbjct: 419 FEAEPTKNQGKKIIALAKKYLVTTLGGELIIINCNRAHQRILFEDFMKNLQSSHTAVQQL 478

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           + P  +     E  +I +  E     G          + +  IP  L+   IP +  +++
Sbjct: 479 MFPYELPFAPHELEVIAQLRELFESSGFMFTIESEK-VVVSGIPLHLTDSEIPNIFHELL 537

Query: 518 DEIIDSSTTYTLQDRIENILATMACYG-SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
            + I+     T ++  +   A   C   ++++G+ +   E   L+  +           G
Sbjct: 538 QQHIE--ALPTTENTQKEAFAKALCKSLAVKTGQVLSEEEQETLINNLFSCQEVLISPFG 595

Query: 577 RPTFIKLKLSDIEKL 591
           +  +  L  ++I+ L
Sbjct: 596 KRIYYSLSANEIDNL 610


>gi|254304060|ref|ZP_04971418.1| DNA mismatch repair protein MutL [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324252|gb|EDK89502.1| DNA mismatch repair protein MutL [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 649

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 187/664 (28%), Positives = 313/664 (47%), Gaps = 89/664 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I D+G 
Sbjct: 3   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISINDSGC 61

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   +D  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 62  GMSKEDLLLSIERHATSKIFTKEDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  R A+A 
Sbjct: 122 QMNVLGGKVTNLKDIQRNIGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLREALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 182 PSVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 230 ANLFKANRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HP+K  ++F N   I + +   I+                                    
Sbjct: 290 HPSKKVVKFANQNAIFDLVKGEIENFFTDDEDFISPYIETENEVEDDIKIENTKNNFLDI 349

Query: 329 -------KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
                  +  S  SV+ K+  S    +N        + ++ T T+  +   E +  + ++
Sbjct: 350 NDFKDDIQDFSQLSVVKKEDYSKKDYNNIRVEKEKTFGSAGTTTESAIVPNEIKEDSKNI 409

Query: 382 LPSDDPTYSEDN-------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              D    +  +             +  E ++    Q      +I  ++   +  D  VI
Sbjct: 410 ENFDSSVKNVISIDNNKVDINDDIVEKSENNKYIFNQEDTNRGKIFDDFSSLKNIDFKVI 469

Query: 429 V------------------DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
                              DQH  HER+++EK++Q++ +  +T Q+LL P   +L   E 
Sbjct: 470 GQVFDTFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMTKQSLLVPIRFELDPREK 529

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
            L +E+ E     G   + F  N I +R IP +  + +   + R+I+D I  +       
Sbjct: 530 QLALENIEIFSSFGFDIDDFDKNEILLRSIPTMNLRDSYENIFREILDNISKNKDV---- 585

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           D  ENI+ +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EK
Sbjct: 586 DIRENIIVSMSCKGAIKANYKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEK 644

Query: 591 LFGR 594
           LF R
Sbjct: 645 LFKR 648


>gi|328462817|gb|EGF34684.1| DNA mismatch repair protein [Lactobacillus helveticus MTCC 5463]
          Length = 636

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/639 (27%), Positives = 290/639 (45%), Gaps = 55/639 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFIDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEIVTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + VRDLFF  PARL +L+S + E   I D+I R+++ Y
Sbjct: 122 KADFSGGSKKGQEDAASQKGTKITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLSLGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +   + NGN  + ++ V G            K ++  + G    
Sbjct: 182 PHVSFTLSNTGK---VLFRTTGNGNLKQTVANVYGRHIAEKMESFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   V +NGR +++  + + I   Y   +    YP+VV+ + +DP  VDVNV
Sbjct: 239 PVLTRSTRNFISVLLNGRYIKNFQLNNAIMDGYGSKLAARHYPIVVIAIHVDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------SVLSKKMISSFHQD-- 348
           HP K  +R      +   I  +I  A+  K   +S           L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITGAISDALLDKTEQSSGFANLENKRETLVDQLEFNLNQDVV 358

Query: 349 ----NAPKTHLPKYATSLTNTQEKLFLQENRLSTND------------------------ 380
                 P+ H           QE    +E +  T                          
Sbjct: 359 NTTRKTPEVHEEAEKPEFLVKQEAKNSEEPKNETEHNYVDINIPREDDQYIITKTWDKNV 418

Query: 381 ------LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                 +  S+     E     +E+ A +        +I   Y++++    L ++DQ AA
Sbjct: 419 ALQQKLMPFSNKKVDQEVISTGDETLANNLPRLAYVGKIDT-YLLAENDGDLYLIDQVAA 477

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
             RL FE++ Q   S KI  Q LLTP +++    +   I +    + +LGI  + FG N+
Sbjct: 478 RRRLQFEQIYQTITSKKIVQQGLLTPIVLEFGNLDFLQIKDKIYQIKQLGIYLDEFGQNS 537

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             +R  P  +   ++ + +R+I+D  ++     T Q+  + + A  A   S++    + +
Sbjct: 538 FIVRSYPTWIHD-HVEESIREILDNYLNLDKGKT-QNLFKRVAALEAKR-SVKGKINLSA 594

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            E  +++ ++ K  +      GR   +++  +++ K+F 
Sbjct: 595 AEGTQIITDLRKTSDPYHDADGRLILVRISQNELRKMFK 633


>gi|308188271|ref|YP_003932402.1| DNA mismatch repair protein mutL [Pantoea vagans C9-1]
 gi|308058781|gb|ADO10953.1| DNA mismatch repair protein mutL [Pantoea vagans C9-1]
          Length = 619

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/611 (26%), Positives = 274/611 (44%), Gaps = 55/611 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDVDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ MA+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIVKSELSMALARHATSKIGSLDDLEAIMSLGFRGEALASISSVSRLTLTSRTADQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++   +P A   GT +EV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPCGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S       R++ + G  F+ +A+ ++ + ++++L+G+ 
Sbjct: 181 ARFDVALSLSHNGKMMRQYRAVSEESQRERRLASICGTTFMQHALRIDWQHDDLSLRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++DK I   IR A+   +   + P  VL LEIDP QVDV
Sbjct: 241 ADPAGSRQVTDLQYCYVNGRMMRDKLINHAIRQAFQTQLQDDQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-KKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +  A+      T   L  ++    +  +N       
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVVSALQAMAAPTLPALQAEEPAPRWQPENRQAAGGN 360

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDP----------------------------- 387
            +A    +  EK      R +       +                               
Sbjct: 361 HFAQPAASASEKKSAASGRETQPAPAWQNKENVYRQREGAVYQQLLKNPVSTSSPTKARE 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             +   +      A     G     +H ++ + +    L+++    A   L   ++  + 
Sbjct: 421 PIARQAERPSPLAAHAQSFGRVLTVLHHHFALLEQDQTLMLMALPVAARWLKQAQL--EP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               +  Q LL P  + + + E     E+   L+++GI+ +  G + + +R +P  L  +
Sbjct: 479 GEEGLKPQPLLIPVRLKIAQEERQAAKENSSLLNQMGIELQPEGDH-VTLRAVPLPLRTQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY----GSIRSGRKMQSIEMNRLLRE 563
           N+  L+ +++  +         Q     +   +A       S          +   LL E
Sbjct: 538 NLQILIPELLGYLARQQENSATQ-----LAQWLARRQETESS-----DWNHSQAINLLAE 587

Query: 564 MEKNPNSSQCN 574
           +E+      C 
Sbjct: 588 LERL-----CP 593


>gi|83721397|ref|YP_441867.1| DNA mismatch repair protein [Burkholderia thailandensis E264]
 gi|83655222|gb|ABC39285.1| mismatch repair protein MutL [Burkholderia thailandensis E264]
          Length = 705

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/664 (26%), Positives = 283/664 (42%), Gaps = 88/664 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 56  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 115

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + + E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR   +    +
Sbjct: 116 IPAAELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDDAHATR 175

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 176 I---DAQTGVLAPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 232

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 233 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 288

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 289 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 348

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLPK 357
           P+K  +RFR+   I  F+  ++Q+A+ +   ++           +S      A     P 
Sbjct: 349 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLSPVEPAQAGSPAAPS 408

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS--EDNDPVEESEATHYQLGIACAQIHQ 415
            +    +         +    N  L     T        P+   +A   +        H 
Sbjct: 409 ASFVRPDAAAAGAGVGHPAPGNTWLRQSRMTQGTLPVAQPLALYDALFGRKDSGAGTPHG 468

Query: 416 NYIISQTTD------------------GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
              + +  D                          A+   +  E+              L
Sbjct: 469 TTGVLEARDAPDAPGAPLFASAPGGAAMPAFSAAGASDPAMHDEQPLGFAVGQIHGIYVL 528

Query: 458 LTPEIIDLLEGECALIMEHD-EDLHRLGIKAERFGPNAIAI---------REIPAILSKK 507
                  ++    A       E   R            +A+            P  +   
Sbjct: 529 AQNARGLVIVDMHAAHERILYEQFKR------ALADRTVAVQTLLIPVSMTATPVEVGTA 582

Query: 508 NIPQLLRDIIDEI-----------------IDSSTTYTLQDRIENILA------------ 538
                 R+ +D +                         LQ     +LA            
Sbjct: 583 EEE---RETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLADLHAFGGSRVLT 639

Query: 539 --------TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                   T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L D++K
Sbjct: 640 ERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLGDLDK 699

Query: 591 LFGR 594
           LF R
Sbjct: 700 LFMR 703


>gi|167618808|ref|ZP_02387439.1| DNA mismatch repair protein [Burkholderia thailandensis Bt4]
 gi|257138037|ref|ZP_05586299.1| DNA mismatch repair protein [Burkholderia thailandensis E264]
          Length = 679

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/664 (26%), Positives = 283/664 (42%), Gaps = 88/664 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + + E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR   +    +
Sbjct: 90  IPAAELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDDAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVLAPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLPK 357
           P+K  +RFR+   I  F+  ++Q+A+ +   ++           +S      A     P 
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLSPVEPAQAGSPAAPS 382

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS--EDNDPVEESEATHYQLGIACAQIHQ 415
            +    +         +    N  L     T        P+   +A   +        H 
Sbjct: 383 ASFVRPDAAAAGAGVGHPAPGNTWLRQSRMTQGTLPVAQPLALYDALFGRKDSGAGTPHG 442

Query: 416 NYIISQTTD------------------GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
              + +  D                          A+   +  E+              L
Sbjct: 443 TTGVLEARDAPDAPGAPLFASAPGGAAMPAFSAAGASDPAMHDEQPLGFAVGQIHGIYVL 502

Query: 458 LTPEIIDLLEGECALIMEHD-EDLHRLGIKAERFGPNAIAI---------REIPAILSKK 507
                  ++    A       E   R            +A+            P  +   
Sbjct: 503 AQNARGLVIVDMHAAHERILYEQFKR------ALADRTVAVQTLLIPVSMTATPVEVGTA 556

Query: 508 NIPQLLRDIIDEI-----------------IDSSTTYTLQDRIENILA------------ 538
                 R+ +D +                         LQ     +LA            
Sbjct: 557 EEE---RETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLADLHAFGGSRVLT 613

Query: 539 --------TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                   T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L D++K
Sbjct: 614 ERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLGDLDK 673

Query: 591 LFGR 594
           LF R
Sbjct: 674 LFMR 677


>gi|260102902|ref|ZP_05753139.1| DNA mismatch repair protein HexB [Lactobacillus helveticus DSM
           20075]
 gi|260083291|gb|EEW67411.1| DNA mismatch repair protein HexB [Lactobacillus helveticus DSM
           20075]
          Length = 636

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 175/639 (27%), Positives = 291/639 (45%), Gaps = 55/639 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFIDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEIVTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + VRDLFF  PARL +L+S + E   I D+I R+++ Y
Sbjct: 122 KADFSGGSKKGQEDAASQKGTKITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLSLGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +   + NGN  + ++ V G            K ++  + G    
Sbjct: 182 PHVSFTLSNTGK---VLFRTTGNGNLKQTVANVYGRHIAEKMESFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YP+VV+ + +DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNNAIMDGYGSKLAARHYPIVVIAIHVDPMLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------SVLSKKMISSFHQDNA 350
           HP K  +R      +   I  +I  A+  K   +S           L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITGAISDALLDKTEQSSGFANLENKRETLVDQLEFNLNQDVV 358

Query: 351 PKT------------------HLPKYATSLTNTQEKLFLQENRLSTND------------ 380
             T                     K +    N  E  ++  N    +D            
Sbjct: 359 NTTRKTPEVHEEAEKPEFLVKQKAKNSEEPKNETEHNYVDINIPREDDQYIITKTWDKNV 418

Query: 381 ------LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                 +  S+     E     +E+ A +        +I   Y++++    L ++DQ AA
Sbjct: 419 ALQQKLMPFSNKKVDQEVISTGDETLANNLPRLAYVGKIDT-YLLAENDGDLYLIDQVAA 477

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
             RL FE++ Q   S KI  Q LLTP +++    +   I +    + +LGI  + FG N+
Sbjct: 478 RRRLQFEQIYQTITSKKIVQQGLLTPIVLEFGNLDFLQIKDKIYQIKQLGIYLDEFGQNS 537

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             +R  P  +   ++ + +R+I+D  ++     T Q+  + + A  A   S++    + +
Sbjct: 538 FIVRSYPTWIHD-HVEESIREILDNYLNLDKGKT-QNLFKRVAALEAKR-SVKGKINLSA 594

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            E  +++ ++ K  +      GR   +++  +++ K+F 
Sbjct: 595 AEGTQIITDLRKTSDPYHDADGRLILVRISQNELRKMFK 633


>gi|261415095|ref|YP_003248778.1| DNA mismatch repair protein MutL [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371551|gb|ACX74296.1| DNA mismatch repair protein MutL [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 644

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 181/648 (27%), Positives = 307/648 (47%), Gaps = 65/648 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS++IIN+IAAGE+IERP+ A+KELIEN++DA ++R++  I  GGK   Q+TDNG G
Sbjct: 4   IHLLSDEIINKIAAGEVIERPASAVKELIENAIDAGATRIQVQIEQGGKKKIQVTDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M + ++ +   RH TSK+  +DD  ++HT GFRGEA+ SI AVS LT+ S   +  +G +
Sbjct: 64  MGAADLDLCYLRHTTSKLTNADDLFHLHTNGFRGEAVASIAAVSKLTITSATQEGESG-R 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G ++     +  + GT   V DLF+  P R  FL SE  E + I D++ + AI++P
Sbjct: 123 IIVKGGEVIEKEDIQASRGTTFLVEDLFYNTPVRRTFLGSETSECSRILDIVLKTAISHP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F +       +        G    RI++ IG       + ++     + + GY    
Sbjct: 183 EIRFDYKVGDRTVFT----GVPGELRSRIAEAIGSKVAKGLLPVDYTEAGVHVTGYISPT 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY--PVVVLLLEIDPRQVDVN 298
           T   G  N  ++F+  R +++K +   +  AY    P G    PV VL L++   + D+N
Sbjct: 239 TETNGKRNHQFLFMRNRPIENKMVSKAVSQAYE---PYGAQCKPVTVLFLDMPDMEFDIN 295

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------------------- 338
           VHPAK  +RF N  ++   +  +I+    K   + S ++                     
Sbjct: 296 VHPAKREVRFANGNLVFLVVTHAIRDTFTKDLEAHSPIIDLSDEFMGGTTPASQTTPAQP 355

Query: 339 -KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP----------SDDP 387
                 +  Q++ P  +  + A       ++   Q+ R S                SD  
Sbjct: 356 AMPETPAQPQNDLPWENPFQQAKPYAAASQQPIQQQARPSFASKPYAQPAKPVNSLSDKK 415

Query: 388 TYSEDNDPVEE---------------------SEATHYQLGIACAQIHQNYIISQTTDGL 426
           +  + +D V++                               +  QI   YI  + ++GL
Sbjct: 416 SKYDVSDDVQDLFSLPEYGKIISLEPDHSKPAPPPETPWAPPSFFQIANTYIAGEDSNGL 475

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKI-TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           +I+DQHAAH R++FE+  +   +  +  SQ LL PE+IDL + E  +    DE L +LG 
Sbjct: 476 LIIDQHAAHTRVLFEQAMESLQNNIMQDSQELLFPELIDLSKQEKEIFRNVDEQLRKLGF 535

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FG +   IR IP+ L      + + D ++++ ++ T   +    E I  + A   +
Sbjct: 536 FVEPFGGDTYQIRSIPSALPLSRAAKAVHDFLNDVDENDTKNDMVKFQEAIAKSWAKTNA 595

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            ++G K++  E+  L+ ++    +  +   G PT ++L L ++ K F 
Sbjct: 596 YQAGDKLKPEEITALVGQLMITQDPLKSPFGSPTLMRLTLEELSKKFR 643


>gi|323465931|gb|ADX69618.1| DNA mismatch repair protein mutL [Lactobacillus helveticus H10]
          Length = 636

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 176/639 (27%), Positives = 291/639 (45%), Gaps = 55/639 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENSLDA ++R+       G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENSLDAGATRIRVDFIDAGLKQIVVQDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKIS+  D   + T GFRGEAL SI AVSH+ +++       G 
Sbjct: 63  GIARDQVDLAFTRHATSKISNEHDLFKVSTLGFRGEALASISAVSHVEIVTATENA-IGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG         A   GT + VRDLFF  PARL +L+S + E   I D+I R+++ Y
Sbjct: 122 KADFSGGSKKGQEDAASQKGTKITVRDLFFNTPARLKYLRSPRTEIMKIVDIINRLSLGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT S        +   + NGN  + ++ V G            K ++  + G    
Sbjct: 182 PHVSFTLSNTGK---VLLRTTGNGNLKQTVANVYGRHIAEKMESFEAKDSDFKITGLMSK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   YA  +    YP+VV+ + +DP  VDVNV
Sbjct: 239 PELTRSTRNFISILLNGRYIKNFQLNNAIMDGYASKLAARHYPIVVIAIHVDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------SVLSKKMISSFHQD-- 348
           HP K  +R      +   I  +I  A+  K   +S           L  ++  + +QD  
Sbjct: 299 HPTKQEVRLSKEKELSRLITGAISDALLDKTEQSSGFANLENKRETLVDQLEFNLNQDVV 358

Query: 349 ----NAPKTHLPKYATSLTNTQEKLFLQENRLSTND------------------------ 380
                 P+ H           QE    +E +  T                          
Sbjct: 359 NTTRKTPEVHEEAEKPEFLVKQEAKNSEEPKDETEHNYVDINIPREDDQYIITKTWDKNV 418

Query: 381 ------LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                 +  S+     E     +E+ A +        +I   Y++++    L ++DQ AA
Sbjct: 419 ALQQKLMPFSNKKVDQEVISTGDETLANNLPRLAYVGKIDT-YLLAENDGDLYLIDQVAA 477

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
             RL FE++ Q   S KI  Q LLTP +++    +   I +    + +LGI  + FG N+
Sbjct: 478 RRRLQFEQIYQTITSKKIVQQGLLTPIVLEFGNLDFLQIKDKIYQIKQLGIYLDEFGQNS 537

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             +R  P  +   ++ + +R+I+D  ++     T Q+  + + A  A   S++    + +
Sbjct: 538 FIVRSYPTWIHD-HVEESIREILDNYLNLDKGKT-QNLFKRVAALEAKR-SVKGKINLSA 594

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            E  +++ ++ K  +      GR   +++  +++ K+F 
Sbjct: 595 AEGTQIITDLRKTSDPYHDADGRLILVRINQNELRKMFK 633


>gi|302327535|gb|ADL26736.1| DNA mismatch repair protein MutL [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 644

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 180/648 (27%), Positives = 307/648 (47%), Gaps = 65/648 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS++IIN+IAAGE+IERP+ A+KELIEN++DA ++R++  I  GGK   Q+TDNG G
Sbjct: 4   IHLLSDEIINKIAAGEVIERPASAVKELIENAIDAGATRIQVQIEQGGKKKIQVTDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M + ++ +   RH TSK+  +DD  ++HT GFRGEA+ SI AVS LT+ S   +  +G +
Sbjct: 64  MGAADLDLCYLRHTTSKLTNADDLFHLHTNGFRGEAVASIAAVSKLTITSATQEGESG-R 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G ++     +  + GT   V DLF+  P R  FL SE  E + I D++ + AI++P
Sbjct: 123 IIVKGGEVIEKEDIQASRGTTFLVEDLFYNTPVRRTFLGSETSECSRILDIVLKTAISHP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++ F +       +        G    RI++ IG       + ++     + + GY    
Sbjct: 183 EIRFDYKVGDRTVFT----GVPGELRSRIAEAIGSKVAKGLLPVDYTEAGVHVTGYISPT 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY--PVVVLLLEIDPRQVDVN 298
           T   G  N  ++F+  R +++K +   +  AY    P G    PV VL L++   + D+N
Sbjct: 239 TETNGKRNHQFLFMRNRPIENKMVSKAVSQAYE---PYGAQCKPVTVLFLDMPDMEFDIN 295

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------------------- 338
           +HPAK  +RF N  ++   +  +I+    K   + S ++                     
Sbjct: 296 IHPAKREVRFANGNLVFLVVTHAIRDTFTKDLEAHSPIIDLSDEFMGGTTPASQTTPAQP 355

Query: 339 -KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP----------SDDP 387
                 +  Q++ P  +  + A       ++   Q+ R S                SD  
Sbjct: 356 AMPETPAQPQNDLPWENPFQQAKPYAAASQQPIQQQARPSFASKPYAQPAKPVNSLSDKK 415

Query: 388 TYSEDNDPVEE---------------------SEATHYQLGIACAQIHQNYIISQTTDGL 426
           +  + +D V++                               +  QI   YI  + ++GL
Sbjct: 416 SKYDVSDDVQDLFSLPEYGKIISLEPDHSKPAPPPETPWAPPSFFQIANTYIAGEDSNGL 475

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKI-TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           +I+DQHAAH R++FE+  +   +  +  SQ LL PE+IDL + E  +    DE L +LG 
Sbjct: 476 LIIDQHAAHTRVLFEQAMESLQNNIMQDSQELLFPELIDLSKQEKEIFRNVDEQLRKLGF 535

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E FG +   IR IP+ L      + + D ++++ ++ T   +    E I  + A   +
Sbjct: 536 FVEPFGGDTYQIRSIPSALPLSRAAKAVHDFLNDVDENDTKNDMVKFQEAIAKSWAKTNA 595

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            ++G K++  E+  L+ ++    +  +   G PT ++L L ++ K F 
Sbjct: 596 YQAGDKLKPEEITALVGQLMITQDPLKSPFGSPTLMRLTLEELSKKFR 643


>gi|188535087|ref|YP_001908884.1| DNA mismatch repair protein [Erwinia tasmaniensis Et1/99]
 gi|238689721|sp|B2VCU8|MUTL_ERWT9 RecName: Full=DNA mismatch repair protein mutL
 gi|188030129|emb|CAO98015.1| DNA mismatch repair protein [Erwinia tasmaniensis Et1/99]
          Length = 611

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 167/599 (27%), Positives = 284/599 (47%), Gaps = 39/599 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MAIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIAKDELAMALARHATSKITSLDDLEAIISLGFRGEALASISSVSRLTLTSRTEAQTEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               V+ + +       +    S +G    R+  + G  F+++A++++ +  E++L G+ 
Sbjct: 181 VRFDVAISLTHNGKLVRQYRAVSDDGQRERRLGAICGTAFLSHALKIDWQHGELSLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+ ++  +   Y ++NGR ++D+ I   IR AY + +     P  VL LEIDP QVDV
Sbjct: 241 ADPSGSKALSELQYCYVNGRMMRDRLINHAIRQAYEDKLGDRHQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +   + + G  T   + + +    +  +N       
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVVSVLQESGAETLPEIATAQPAERWQPENRQAAGGN 360

Query: 357 KY--------------ATSLTNTQEKLFLQENRLSTNDLLPSDDPTY-------SEDNDP 395
            +              A+S    QE ++ +    +   LL +   +        S   + 
Sbjct: 361 HFATPAPAAAPRPASTASSSWQRQEPVYQKREGAAYQQLLQTPTRSEEPPLSPASVTQND 420

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                A     G     + + Y + +   GL ++    A   L   ++  +  S  +  Q
Sbjct: 421 APALSAHAQSFGRVLTIVREQYALLEGKKGLALLALTVAERWLKQAQL--EPGSEGLRPQ 478

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  + L + E        E L+++GI   +F  + + +R +P  L ++N+  L+ +
Sbjct: 479 PLLIPVRLKLDKAERDAGNRCSELLNQMGIDL-KFDAHHVMLRAVPLPLRQQNLQNLIPE 537

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++  +         Q  +    A      S    +     +   LL E+E+      C 
Sbjct: 538 MLGYLAQHQDVTAFQ--LAQWFA----RQSASEHQHWNHSQAITLLAEVERL-----CP 585


>gi|291287671|ref|YP_003504487.1| DNA mismatch repair protein MutL [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884831|gb|ADD68531.1| DNA mismatch repair protein MutL [Denitrovibrio acetiphilus DSM
           12809]
          Length = 579

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/594 (27%), Positives = 282/594 (47%), Gaps = 20/594 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LSE + N +AAGE++ERP   +KEL+ENS DA ++R+  V+  GG    ++TDNG G
Sbjct: 4   ILILSEDVANMVAAGEVVERPFNVVKELMENSADAGATRISVVVENGGVGMVRVTDNGRG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++P A+QR  TSKI  +DD  N+ TFGFRGEAL +I +VS  ++ S     + GA+
Sbjct: 64  ILPDDLPAALQRFATSKIKNADDVYNVKTFGFRGEALAAISSVSDFSIRSCRKDYD-GAE 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I      S  P     GT VEVR LF  +PARL F KS   E   I   +R  ++  P
Sbjct: 123 IRIKHGGTPSGVPAPAIEGTTVEVRSLFANVPARLKFFKSFSAEEREIAKFVRFFSVINP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++   S    N       +        +     +D     V    +   + L   T + 
Sbjct: 183 NIAIELSINGKN--TYTATAGMDMTARAVQVTREKDL----VYGESEYEGMKLSFVTSLA 236

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T  R   +   V +NGR V+D  I+  + TAY   IP G++P   + L +DP +VDVNVH
Sbjct: 237 TVQRYRKDMIIVGVNGRVVKDPSIVQAVVTAYHRMIPDGKFPACAVSLHVDPDKVDVNVH 296

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK+ ++  +   I +F+  +I+  ++  G     V  +   S+ H      ++      
Sbjct: 297 PAKTTVKLLDARDIFSFVHHNIKNRLDDAGH-DQGVQMRTPDSTEH----ITSNSYSRPE 351

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
             T    +   Q   +++   +   +   S +   + E       +     Q+    I+ 
Sbjct: 352 PDTKYDHQFATQSYDIASEMEVVEYEHRSSAEIVHIPEQSGAESAV-RVVGQLFNTVIVC 410

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +     + +DQH AHER+++EK      +  + S  +  P +I++ E E A+  +  +  
Sbjct: 411 EKDGEALFIDQHVAHERVLYEKF-IREAAMTVPSVVMYEPLLINVGEDELAVAEDSKDVF 469

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
            + G + E FG  ++ +  +P  +  ++I   ++ I+ ++++     ++  R       M
Sbjct: 470 DKFGYEIESFGGESLKVSRVPTDVLNRDIEAQVKGILADMLEERKDTSVDYR----ALVM 525

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C  ++++G K++  EM RL+ ++    N   C HGRP   K       + FGR
Sbjct: 526 SCKAAVKAGDKLEMHEMRRLVSDLFTTDNPYTCPHGRPIVFKQPEEFFLRKFGR 579


>gi|327395424|dbj|BAK12846.1| DNA mismatch repair protein MutL [Pantoea ananatis AJ13355]
          Length = 612

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/602 (28%), Positives = 282/602 (46%), Gaps = 44/602 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDVEIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  CGIAKNELAMALARHATSKIASLDDLEAIMSLGFRGEALASISSVSRLTLTSRTAEQNEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   G+ +EV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPCGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    + +G    R+  + G  F+ +A+ ++ + +++ L+G+ 
Sbjct: 181 ARFDVAISLSHNGKLMRQYRAVNDDGQRERRLGAICGTTFMQHALRIDWQHDDLVLRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+ +R  ++  Y ++NGR ++DK I   IR A+   +   ++P  VL LEIDP QVDV
Sbjct: 241 ADPSGSRQVSDIQYCYVNGRMMRDKLINHAIRQAFQSQLQDDQHPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK----- 352
           NVHPAK  +RF    ++ +FI Q +   + +        L  +  +   Q    +     
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVMSVLQESASPVLPTLQAEEPTPRWQQENRQAAGGN 360

Query: 353 ----------THLPKYATSLTNTQEKLFLQENRL--------STNDLLPSDDPTYSEDND 394
                        P  A +  N       +E R+        +++    S +P   E   
Sbjct: 361 HFSQPAVTGDAARPSVAPAWQNKDAGYSQREGRVYQQLLKTPASSPATKSAEPAAREPVS 420

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
            V    A  +  G     +   Y + +    L+++    A   L   ++  +     + S
Sbjct: 421 AVPPLAAHAHSFGRVLTVLEGQYALLEQGQRLLLMALPVATRWLKQAQL--EPTEGGLKS 478

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P  + +   E     E+   L+ +GI     G + I +R +P  L  +N+  L+ 
Sbjct: 479 QPLLIPVRLKIASAERKAAQENLSLLNLMGIDLHPEGDH-IILRAVPLPLRTQNLQILIP 537

Query: 515 DIIDEIIDSSTTYTLQDRIENILATM--ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +++  +         Q  +   LA    A        +     +   LL E+E+      
Sbjct: 538 ELLGYLARQQENSATQ--LAQWLARREDA------EPQHWNHSQAITLLAELERL----- 584

Query: 573 CN 574
           C 
Sbjct: 585 CP 586


>gi|311030166|ref|ZP_07708256.1| DNA mismatch repair protein [Bacillus sp. m3-13]
          Length = 594

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/594 (26%), Positives = 271/594 (45%), Gaps = 42/594 (7%)

Query: 38  ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGE 95
            S+ +E  +   G S  ++ DNG G+  E+   A QRH TSKI +  D   I T GFRGE
Sbjct: 4   NSTIIEIELEEAGLSKIRVLDNGDGIEQEDCLTAFQRHATSKIKNENDLFRIRTLGFRGE 63

Query: 96  ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL 155
           ALPSI +VS   + +       G  ++  G  + +    +   GT + V+ LFF  PARL
Sbjct: 64  ALPSIASVSLFDITTST-GEVPGTHLSFKGGVLETQELSSSRKGTDIVVQHLFFNTPARL 122

Query: 156 NFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
            ++K+   E   I+D++ R+A+A+P +SF  S       +M   + NG+    ++ + G 
Sbjct: 123 KYMKTIHTELGNISDMVNRLALAHPSISFRLSHNGK---RMLATNGNGDSLHVLAAIYGM 179

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
           +     + ++  S +  ++GY  +P   R + N     INGR V++  ++  IR  Y   
Sbjct: 180 NIAKKMIPIHFTSLDFEVKGYIAMPEVTRASKNYISTIINGRYVKNYTVVRAIREGYHTL 239

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           +P+GRYP+V L + +DP  VDVNVHPAK  +R      +   + + I+    +K +  S+
Sbjct: 240 LPIGRYPIVYLEVMMDPLLVDVNVHPAKLEVRLSKEDELYRLVAEGIKDVFGQKQLIPSN 299

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQE-------KLFLQENRL------------ 376
              K+   +       +T   + +  +  T E       K  ++E+RL            
Sbjct: 300 SPRKQTSYTEEPKPTQQTFTLQESIPVERTVERQAQPSIKQIVEESRLIQVNEPTETWGD 359

Query: 377 -STNDLLPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQNYIIS 420
            + ND   S+      ++  +EE E  + +                     Q+H  YI++
Sbjct: 360 TNHNDAYQSNQSDEYVEDSFIEEEEIHNEKQPGPSHEKKRESRIPALYPIGQMHGTYIVA 419

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           Q  +GL ++DQHAA ER+ +E   Q     +   Q LL P  I+    E   + EH E  
Sbjct: 420 QNENGLYLIDQHAAQERINYEYFYQKLGQEERNLQELLVPLTIECSLDEYLFLEEHAEVF 479

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
             +GI  E FG     ++  P    +    + + ++I+  ++      + D  E     M
Sbjct: 480 EEVGIMLEAFGHQTFIVKAHPVWFPRGEERETIDEMINLCLEKKKI-NISDLREEAAIMM 538

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C  +I++   ++  E+  LL  + +  N   C HGRP  I     ++EK+F R
Sbjct: 539 SCKAAIKANHHLRHDEITALLNTLREAENPFTCPHGRPILIHFSSYELEKMFKR 592


>gi|291619092|ref|YP_003521834.1| MutL [Pantoea ananatis LMG 20103]
 gi|291154122|gb|ADD78706.1| MutL [Pantoea ananatis LMG 20103]
          Length = 620

 Score =  426 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/602 (28%), Positives = 282/602 (46%), Gaps = 44/602 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 9   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDVEIEKGGAKLIRIRDNG 68

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 69  CGIAKNELAMALARHATSKIASLDDLEAIMSLGFRGEALASISSVSRLTLTSRTAEQNEA 128

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   G+ +EV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 129 WQAYAEGRDMDVTVKPAAHPCGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVIRRIAL 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    + +G    R+  + G  F+ +A+ ++ + +++ L+G+ 
Sbjct: 189 ARFDVAISLSHNGKLMRQYRAVNDDGQRERRLGAICGTTFMQHALRIDWQHDDLVLRGWV 248

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+ +R  ++  Y ++NGR ++DK I   IR A+   +   ++P  VL LEIDP QVDV
Sbjct: 249 ADPSGSRQVSDIQYCYVNGRMMRDKLINHAIRQAFQSQLQDDQHPAYVLYLEIDPHQVDV 308

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK----- 352
           NVHPAK  +RF    ++ +FI Q +   + +        L  +  +   Q    +     
Sbjct: 309 NVHPAKHEVRFHQSRLVHDFIYQGVMSVLQESASPVLPTLQAEEPTPRWQQENRQAAGGN 368

Query: 353 ----------THLPKYATSLTNTQEKLFLQENRL--------STNDLLPSDDPTYSEDND 394
                        P  A +  N       +E R+        +++    S +P   E   
Sbjct: 369 HFSQPAVTGDAARPSVAPAWQNKDAGYSQREGRVYQQLLKTPASSPATKSAEPAAREPVS 428

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
            V    A  +  G     +   Y + +    L+++    A   L   ++  +     + S
Sbjct: 429 AVPPLAAHAHSFGRVLTVLEGQYALLEQGQRLLLMALPVATRWLKQAQL--EPTEGGLKS 486

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P  + +   E     E+   L+ +GI     G + I +R +P  L  +N+  L+ 
Sbjct: 487 QPLLIPVRLKIASAERKAAQENLSLLNLMGIDLHPEGDH-IILRAVPLPLRTQNLQILIP 545

Query: 515 DIIDEIIDSSTTYTLQDRIENILATM--ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +++  +         Q  +   LA    A        +     +   LL E+E+      
Sbjct: 546 ELLGYLARQQENSATQ--LAQWLARREDA------EPQHWNHSQAITLLAELERL----- 592

Query: 573 CN 574
           C 
Sbjct: 593 CP 594


>gi|257885711|ref|ZP_05665364.1| DNA mismatch repair protein [Enterococcus faecium 1,231,501]
 gi|257821567|gb|EEV48697.1| DNA mismatch repair protein [Enterococcus faecium 1,231,501]
          Length = 702

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/699 (23%), Positives = 292/699 (41%), Gaps = 110/699 (15%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE----------------------------KLFLQENRLSTND 380
            A +   PK  +SL   +E                              F +EN      
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENYSGFSEENTTYPEK 419

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI------------ 428
              + D      ++ VE++     +         +     Q    +              
Sbjct: 420 TAKTVDKFGENVDNFVEKTVEKSEKKEFPIVDNMEKTNEEQADKSVEEDEQIYEEELTLH 479

Query: 429 --VDQHAAHERLIFEKMRQDFNSTKITSQTLLT-------PEIIDLLEGECALIMEHDED 479
              D    +E+ + + +++      +     L          +         +I +H   
Sbjct: 480 PEFDFTQGNEKTLEQAIKKLETEKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQ 539

Query: 480 LHRLGIKA--ERFGPNAIAIRE--IPAILSKKNIPQ--------LLRDIIDEIIDSSTTY 527
             R+  +   E+ G  +  ++E  +P +L   N           LL D    + +     
Sbjct: 540 -ERIKYEYFREKIGEVSDDLQELLVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNS 598

Query: 528 TL-------------QDRIENIL-------------------ATMACYGSIRSGRKMQSI 555
            +             +  I  ++                     M+C  SI++   +   
Sbjct: 599 FIVRAHPTWYPNGEEESIIREMIDMLLTTGNVSVKKFREATAIMMSCKRSIKANHYLNEA 658

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   LL+++ +  N   C HGRP  I    SD+E++F R
Sbjct: 659 QARVLLKDLARCENPFNCPHGRPVLIHFTNSDMERMFKR 697


>gi|88658331|ref|YP_507679.1| MutL/HexB family DNA mismatch repair protein [Ehrlichia chaffeensis
           str. Arkansas]
 gi|123736381|sp|Q2GFV4|MUTL_EHRCR RecName: Full=DNA mismatch repair protein mutL
 gi|88599788|gb|ABD45257.1| DNA mismatch repair protein, MutL/HexB family [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 673

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 217/673 (32%), Positives = 341/673 (50%), Gaps = 80/673 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  + IN+IAAGE+IE P+  +KEL+ENS+DA+++ +   I  GG++   ++DNG
Sbjct: 1   MSIILLDPRTINRIAAGEVIECPASVVKELVENSIDAKATAISITIERGGRNLIIVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  E++ +A  RH TSK+ D D + + + GFRGE L SI AV  + ++S+   ++T  
Sbjct: 61  IGIKKEDMEIAFARHATSKLPDGDLTKVRSLGFRGEGLTSIAAVGKVKMVSKYRDSDTAW 120

Query: 120 QIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +   G EK   + P A++ GT +EVRDLFF  P RL FL++E+ E   I D++ ++A+ 
Sbjct: 121 LMVFEGGEKTQELTPDALSCGTYIEVRDLFFATPNRLKFLRTEKAEVQSIIDMMNKLAMV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F+        +K   Q +N +    I  + G +F  N++ +N K  +I L GY G
Sbjct: 181 NHNVMFSLFVDNKQVFKYLTQQSNIDRLSEIKTL-GMEFCKNSLPVNVKEEQIQLSGYIG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY---------PVVVLLLE 289
            PT +RG ++  Y F+N R V D  ++  +R AY++ I   +Y         P   +   
Sbjct: 240 SPTLSRGKSSLIYTFVNSRPVYDNLLIGAVRYAYSDFIEKDKYPVVVLYLDIPCDQVDAN 299

Query: 290 IDPRQVDVNVHPAK-----------------------SYIRFRNPTIIRNFIIQSIQ--- 323
           + P + +V     K                       S   F N   +   ++ S     
Sbjct: 300 VHPNKSEVRFQDKKLVYRTVVNAIKEVLSINLNTKLKSISEFENDHFVHASMVNSRNIGN 359

Query: 324 ---------------------KAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
                                +  + K + T          SF  D+   T+  K     
Sbjct: 360 SVSSEFFKCFQNRKPLLNNDVQKYSSKNVETDDQSLLDTNVSFCTDSKMITNKLKEERVY 419

Query: 363 TNTQEKLFLQENRL--STNDLLPSDDPTYSEDNDPVEESEATH----------------- 403
            N++E +   ++++  S  D+L       +  N+ ++ES +                   
Sbjct: 420 ENSREHINKGDSKIEVSNFDILGEKKNFVNLANNLLQESPSIDSGKFNTSKKVPSDSLID 479

Query: 404 -YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            Y LG A  QIH  YIISQT D +VI+DQHAAHERL +E M+Q      I  Q LL PEI
Sbjct: 480 TYPLGYALCQIHSRYIISQTQDSIVIIDQHAAHERLTYEYMKQVMAKEGIKRQILLIPEI 539

Query: 463 IDLLEGEC-ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I++       L++E+ E L +LG+  E  G  ++ +RE+PA+    ++  L+ +I+D I+
Sbjct: 540 IEMNNHLDLELLVEYKEKLLKLGLLIEPLGNLSVIVREVPALFGSFDVKSLIINIVDSIM 599

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           +   T  L D+I++I  T+ACY SIRSGRK++  EMN +LR ME   +S QCNHGRPT++
Sbjct: 600 EVGDTLFLDDKIKDICGTIACYSSIRSGRKLKIEEMNAILRNMENTAHSGQCNHGRPTYV 659

Query: 582 KLKLSDIEKLFGR 594
           +L L +I++LF R
Sbjct: 660 ELNLVEIDRLFSR 672


>gi|239617975|ref|YP_002941297.1| DNA mismatch repair protein MutL [Kosmotoga olearia TBF 19.5.1]
 gi|259510021|sp|C5CF28|MUTL_KOSOT RecName: Full=DNA mismatch repair protein mutL
 gi|239506806|gb|ACR80293.1| DNA mismatch repair protein MutL [Kosmotoga olearia TBF 19.5.1]
          Length = 602

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 190/611 (31%), Positives = 312/611 (51%), Gaps = 26/611 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI +L +++I +IAAGE++      +KEL+EN+LDAE++ VE  I  GGK + +++DNG
Sbjct: 1   MKIHELPQEVILKIAAGEVVTGCFSVVKELVENALDAEATTVEVEIKAGGKEYIRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  EE+ MA++ H TSKI   +D   I T+GFRGEAL +I +VS + + S P   + G
Sbjct: 61  IGMLPEELKMAIKPHTTSKIQCIEDLERILTYGFRGEALSTISSVSRMRISSMPDNADLG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             I ISG KI   +      GT VEV DL F  PAR  FLKS++VE  ++T++++R  +A
Sbjct: 121 LTIEISGGKIVREKSYIGPKGTTVEVYDLLFNTPARRKFLKSQRVEGRMVTEIVQRFILA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P   F +       Y +   +      ERI  V  E    + +E+ E+++ I++ GY  
Sbjct: 181 IPDAGFKYIRDGELIYDL---TPAERILERIPVVFPELSTTDLLEVKEETSGISITGYIT 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R N     VF+NGR V+   +   I   Y E++  GR+P  +L + ++P  +DVN
Sbjct: 238 FPERTRFNRLGEMVFVNGRYVRQPELNYAIEKGYGESLEKGRFPFAILFISVNPEMIDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           +HP K  +RF NP+++ + I ++++  +   G S   +  +    S    +  +    K 
Sbjct: 298 IHPQKLEVRFSNPSLVFDAIKRAVRNTLRTSGTSILRIEKRPFPGSSTNYSGIQQDTKKQ 357

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---------------VEESEATH 403
            +                        +         P                E++EA  
Sbjct: 358 ESDNPEKARGYGTHLRETHWEQRDHFEKRKVPLHYQPDNELLLNIERTASRRFEKTEAKE 417

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                      + YI+++T DGL+IVDQHAAHERLI+EK+++     KI SQ LL+P  +
Sbjct: 418 TGEPRLFGVFGERYILAETKDGLLIVDQHAAHERLIYEKLKKAA---KIQSQKLLSPIRL 474

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
            L +   +L+ E   D+ +LG +   F  + I +  IP+ILS+      L +++DE+   
Sbjct: 475 TLEDSRKSLLREKKNDVEKLGFQIS-FEGDRIFLTGIPSILSESVAVNALNEVLDELRLE 533

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                 +   +++L+T+AC  +I++G ++   E   LL ++ +      C HGRP  + +
Sbjct: 534 GLEEP-EKIFDHLLSTLACKSAIKTGDRLSESEAKELLEKLLEEEILF-CPHGRPVSMLI 591

Query: 584 KLSDIEKLFGR 594
           +  D+++ F R
Sbjct: 592 RFKDLDRHFSR 602


>gi|304396957|ref|ZP_07378837.1| DNA mismatch repair protein MutL [Pantoea sp. aB]
 gi|304355753|gb|EFM20120.1| DNA mismatch repair protein MutL [Pantoea sp. aB]
          Length = 621

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/556 (28%), Positives = 259/556 (46%), Gaps = 38/556 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+E  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIEVDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIVKAELSMALARHATSKIASLDDLEAIMSLGFRGEALASISSVSRLTLTSRTADQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++   +P A   GT +EV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMTVTVKPAAHPCGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S       R++ + G  F+ +A+ ++ + ++++L+G+ 
Sbjct: 181 ARFDVAISLSHNGKMMRQYRAVSEESQRERRLAAICGTTFMQHALRIDWQHDDLSLRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++DK I   IR A+   +   + P  VL LEIDP QVDV
Sbjct: 241 ADPAGSRQVTDLQYCYVNGRMMRDKLINHAIRQAFQTQLQDDQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA------- 350
           NVHPAK  +RF    ++ +FI Q +  A+     +T   L  +  +   Q          
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVVSALQAMAATTLPALQAEEPAPRWQPENRQAAGGN 360

Query: 351 -----------PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE-------- 391
                       K    +        +E ++ Q        LL +     S         
Sbjct: 361 HFAQPAASASETKPSSARETPPAWQNKENVYRQREGAVYQQLLKTPSGPPSSGTTPPLSA 420

Query: 392 ------DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                                G     +H ++ + +    L+++    A   L   ++  
Sbjct: 421 REPAPRPAAKPSPLAPHAQSFGRVLTILHNHFALLEQDQTLMLMSLPVAARWLKLAQL-- 478

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
           +     +  Q LL P  + +   E     E+   L+++GI  +  G + + +R +P  L 
Sbjct: 479 EPGEEGLKPQPLLIPVRLKIALNERQAAKENSSLLNQMGIDLQLDGDH-VTLRAVPLPLR 537

Query: 506 KKNIPQLLRDIIDEII 521
            +N+  L+ +++  + 
Sbjct: 538 TQNLQILIPELLGYLA 553


>gi|260774599|ref|ZP_05883511.1| DNA mismatch repair protein MutL [Vibrio metschnikovii CIP 69.14]
 gi|260610393|gb|EEX35600.1| DNA mismatch repair protein MutL [Vibrio metschnikovii CIP 69.14]
          Length = 637

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 167/614 (27%), Positives = 276/614 (44%), Gaps = 50/614 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R+E  I  GG    ++ DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIEIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  SGINKDELGLALSRHATSKIQTLDDLEAIISLGFRGEALASISSVSRLTITSRPATQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPSAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T         +    S+      R++ V G  F+ + +++      + L G+ 
Sbjct: 181 SRFDVSLTLRHNGKIIRQYRAASSERQEENRLAAVCGASFVKHMLKIELAHQGLRLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   +    VL +E+DP  VDV
Sbjct: 241 TTPQGARQQSDLQYCYVNGRMMRDKLINHAIRQSYESSLRPDQCATYVLFIELDPHLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---------- 347
           NVHPAK  +RF    ++ +FI Q++  A+       +  L++   S+             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALADSEYIETPELNQAAFSAPVPTHMSNERSTD 360

Query: 348 -----------------------------DNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                                          A  +H     T+         + E   + 
Sbjct: 361 PDQPARNLSDKDGYSRQYLTTERPLQAVIQEAKASHSWNRPTTAKPRSSAPVMAEQSQAY 420

Query: 379 NDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
             L+   +   S DN     +          +LG A A +   Y++  T  G V++    
Sbjct: 421 QQLMKVSEAPVSIDNRLSTTEKSSTLSLIVTKLGKAIAVVDGQYLLMTTDQGCVLLALTK 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A E  +  ++  +     + SQ LL P  + +   E      + E L RLGI        
Sbjct: 481 AVEWRVRGQL--NSQEEPLKSQPLLVPLSVKVSNEEIRGFELYRELLERLGIHLVTRSHQ 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
            + +  +P  L ++N+  L+ D++  +     +  L   ++NI+  ++    I       
Sbjct: 539 TVMVMGVPQPLRQQNLQLLIPDLLSYLALHGASGVLTLNVDNIVTWLSQRVLIEKNDY-T 597

Query: 554 SIEMNRLLREMEKN 567
             E  +L+ E+E+ 
Sbjct: 598 LSEAIQLIAELEQL 611


>gi|227484986|ref|ZP_03915302.1| DNA mismatch repair protein MutL [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236983|gb|EEI86998.1| DNA mismatch repair protein MutL [Anaerococcus lactolyticus ATCC
           51172]
          Length = 587

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/601 (30%), Positives = 306/601 (50%), Gaps = 21/601 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+KL ++ + +IAAGE+IE P   IKEL+ENS+DA S  +   I  GGK++ ++TD+G
Sbjct: 1   MAIKKLDKETVEKIAAGEVIESPLSIIKELVENSVDAGSKNITVEIKNGGKTYIRVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  ++I +A ++H TSKI+  DD   I + GFRGEALPSI +VS +  +S+    + G
Sbjct: 61  SGIAKDDIELAFEKHATSKITKFDDLFKISSLGFRGEALPSIASVSKVVAISKTQDADVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ +SG ++   + +A N GT + V DLF+ +PAR  FLKS+  E+N IT ++   AI 
Sbjct: 121 TKLDLSG-RVKVKKSIATNKGTSIIVEDLFYNMPARRKFLKSDIAESNKITKLMYAFAIG 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  VSF +      +++ N   T+ +   +IS ++      N +EL   +    + G  G
Sbjct: 180 YKDVSFKYIKDDRIQFQSN---TSLDLKFKISDLLDNLLEENLLELKATNTSYRIDGEIG 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PT+ RGN +  Y+F+N R ++D+ I  TI   Y   IP GR+PV  + +  DP+ +DVN
Sbjct: 237 LPTYYRGNRSMQYIFVNDRLIEDEEITKTIERQYIGLIPQGRFPVFFIFIYTDPKNIDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           +HP K  +++     +   I  S++  +  K    S  +  K  +        K  L KY
Sbjct: 297 IHPNKKLVKYTYEDELVELINDSVKNLLKSKQAINSIDIKDKKQNEILDFTDYKAVLDKY 356

Query: 359 ATS--LTNTQEKLFLQENRLSTNDLLPSDDPT---YSEDNDPVEESEATHYQLGIACAQI 413
           + +  L   +EK +   N + +N    +D  +   Y+ +    E+S  +  ++      I
Sbjct: 357 SPAEMLIREEEKPY---NSIESNQDFFNDKISIDLYTNEEKIREDSFFSDIEVPSYKTSI 413

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            + Y I +  + + I+D   A E++   +   D+NS KI+ Q +L P  I+L + +    
Sbjct: 414 FRRYSIFEDKEKIYILDHRKAEEKIKMSEYINDYNSNKISRQLVLNPIKINLNKIDIGRY 473

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            +  +  ++LG   E     ++ IREIP I           +I+D          L   +
Sbjct: 474 EQKQDLFNKLGFDIELISDKSVIIREIPIIFDIPENNNFFYEILDF---DDNENILFKNL 530

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
             ++  +    S R G  +   E   L +++ K  +  +   G+PT I L+  D+EK F 
Sbjct: 531 RKLVKNI----SFRKGNTINKDEAIELYKKLMKEEDPYRTYDGKPTIITLEDKDLEKYFE 586

Query: 594 R 594
           R
Sbjct: 587 R 587


>gi|300871537|ref|YP_003786410.1| DNA mismatch repair protein [Brachyspira pilosicoli 95/1000]
 gi|300689238|gb|ADK31909.1| DNA mismatch repair protein [Brachyspira pilosicoli 95/1000]
          Length = 605

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 185/608 (30%), Positives = 306/608 (50%), Gaps = 17/608 (2%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I KL + + N+IAAGEIIERP+  +KEL+EN++D+ +  +E  +   G     + D
Sbjct: 1   MKKSIMKLPKSVANRIAAGEIIERPASMLKELLENAVDSGADNIEVSVEEAGIKTMIVED 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+  EE+P+A+  H TSKI   +D  NI+T GFRGEAL SIG V++L ++S+     
Sbjct: 61  NGSGIAFEELPLAITHHATSKIYSIEDLDNIYTLGFRGEALASIGDVTNLEIVSKSIDEK 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           TG +I +   KI   +P A   GT +  ++LFF IPAR  FLK    E  L+ +V    A
Sbjct: 121 TGGKIVVEAGKILEHKPYASVNGTKITAKNLFFNIPARYKFLKHISREFYLVKEVFDMEA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQ-VIGEDFINNAVELNEKSNEITLQG 235
           +  P ++            +N      N  +RI   +   +  +N +ELN + N+I + G
Sbjct: 181 LVQPNITMKLYNNGKL---VNSYLKVDNLKDRIENYLNDSNIFSNLIELNIEKNDINIYG 237

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
                  ++      ++F+N R ++++ I   I+ AY+ +IP  RYP   L + +D  +V
Sbjct: 238 LFSNSKISQSMRKNNFIFLNNRPIENRVIAYAIKNAYSNSIPKERYPFFFLYINVDTNKV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHP+K  +R +N   I   I  +I   IN     +S  +   +          ++  
Sbjct: 298 DVNVHPSKKEVRIKNERDISGIIYNAIYNNINSVNNFSSVNIEVDIDKDITPTFPIQSSN 357

Query: 356 PKYATSLT------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ--LG 407
              + S        N         N L +N    +       +N+ +E  +         
Sbjct: 358 ITASNSANNFNHTENNYSHTVFNNNELVSNVSYDNVFNRDDVNNNNLEPQKNNIEFGEYV 417

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A  Q+  +YIIS+  + + I+DQHAA+ERL +E++ +   S K+  + LL P  I+  +
Sbjct: 418 KAVGQVFSSYIISERGNEMYIIDQHAAYERLNYERIYKTLMSGKLEYEKLLIPCEIEYRD 477

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN-IPQLLRDIIDEIIDSSTT 526
            E  ++    E +  +GIK E    N+I I E+P  + K   I ++++DI+D  I   + 
Sbjct: 478 YEIDILNSSKEQIESIGIKFESNSKNSIIIDEVPIYIPKNQKIDKIIKDILDIYISKESN 537

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            +L+  I++  +T++C  S ++G K+   +M  LL  +E+    + C HGRP  ++L   
Sbjct: 538 NSLEKLIKHTCSTISCKYSPKAGDKLSLNDMQTLLDLLEEENILTNCPHGRPFVLRLSKD 597

Query: 587 DIEKLFGR 594
            ++K F R
Sbjct: 598 YLDKKFFR 605


>gi|332882537|ref|ZP_08450150.1| DNA mismatch repair protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679509|gb|EGJ52493.1| DNA mismatch repair protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 612

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 155/614 (25%), Positives = 287/614 (46%), Gaps = 33/614 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+ A+KEL+EN++DA+++ ++ +I   GK+  Q+ DNG G
Sbjct: 5   IKLLPDHVANQIAAGEVIQRPASAVKELMENAIDAKATVIKLLIKEAGKTLVQVIDNGIG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++ +  ++ +RH TSKI  ++D   + T GFRGEAL SI A++H+ + ++  ++  G +
Sbjct: 65  MSTTDARLSFERHATSKIQRAEDLFQLQTKGFRGEALASIAAIAHIEMQTKRQEDELGTE 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI+   P   N GT + +++LFF IPAR NFLKS+ VE   I D   R+A+A+P
Sbjct: 125 IHIEGSKITRQEPCVCNNGTSIAMKNLFFNIPARRNFLKSDSVEMRHILDEFHRVALAHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-ITLQGYTGI 239
            + F      +  Y +       NF +RI  + G       V +  +    + + G+   
Sbjct: 185 SIQFYLYNNGNELYNLPP----ANFRQRIVHLFGGRTNEKLVPIISEDTPVVKISGFIVK 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +   +    ++ +N R V+++++   I  AY   I   + P   + LE+DP  +D+N+
Sbjct: 241 PEYLPKSKQLQFLMVNHRFVKNQYLNHAITAAYEGLIRPDQKPEFFICLEVDPATIDINI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ I+F     I   +  +I+ ++ +  I+ +   +K    +F      K   P + 
Sbjct: 301 HPTKTEIKFEEEHSIYALLKSAIKHSLGQFSIAPTLDFTKD--PTFDIPYQYKDKEPSFP 358

Query: 360 TSLTNTQEKLF-------------------LQENRLSTNDLLPSDDPTYSEDNDPVEE-- 398
               +     F                    Q+       L    +   +   + VE   
Sbjct: 359 KIEVDPDFNPFKMETPAVKSSSGGGGNSFSFQKKTAQWESLYTGIESAINTTAEAVESTL 418

Query: 399 -SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                    G     + + Y+I+     L+I++ + AH+R+++E   +    T   SQ L
Sbjct: 419 FEAEPAKPQGKKIISLAKKYLITTLGGELIIINSNRAHQRVLYEGFMKSLERTHTASQQL 478

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           + P  +     E  +I +       +G        + I +  IP  L+   IP +  ++I
Sbjct: 479 MFPYELSFSAHELQVIAQLQTLFESIGFMF-AIEDDKIVLSGIPLHLTDSQIPNIFNELI 537

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            + I+     T   + E    T++   +I++G+ +   E   L+  +           G+
Sbjct: 538 QQHIEL-LPTTENTQKEAFAKTLSKSLAIKTGQALSEEEQESLINNLFSCQEVLISPFGK 596

Query: 578 PTFIKLKLSDIEKL 591
             +  L +++I++L
Sbjct: 597 RIYYNLSVNEIDRL 610


>gi|298530256|ref|ZP_07017658.1| DNA mismatch repair protein MutL [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509630|gb|EFI33534.1| DNA mismatch repair protein MutL [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 580

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 181/595 (30%), Positives = 293/595 (49%), Gaps = 27/595 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L   + NQIAAGE++ERPS  +KEL+ENSLDA +  V+  +  GG++  ++ D+G G
Sbjct: 9   IKVLPPGLQNQIAAGEVVERPSSVVKELVENSLDAGAGSVQVYLEQGGQALVEVVDDGAG 68

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M   ++ +AV RH TSKI    D  ++ +FGFRGEALPSI +VS L L S     + G+ 
Sbjct: 69  MLPADMALAVTRHATSKIFSMQDLVSVQSFGFRGEALPSIASVSRLRLSSCVQGRDEGSF 128

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I         P AM+PGT V+V++L   IPARL FLK++  E    ++   R+A+A  
Sbjct: 129 LEILYGDHLEEGPEAMDPGTRVKVQNLLANIPARLKFLKTKNTEAKKCSENFIRLALANL 188

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V     +       ++    N N  ER+S+V  E    +  E+     +  + G    P
Sbjct: 189 EVDLELYSEGR---SLHRFFANENLKERLSRVWPEQLCRDLKEVELDQGDFRVHGVASAP 245

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    +   ++N R V+DK ++S ++ AY   +    YP  V+ LEI P +VDVNVH
Sbjct: 246 ENAQARGERMLFYVNNRAVKDKTLISALKQAYKGRLLSREYPQAVIFLEIPPEEVDVNVH 305

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAKS +RFRN   + + + +++ K ++K             + +   D A +   P+Y  
Sbjct: 306 PAKSEVRFRNEKHVFSLVSRAVGKVLDKNY------FQVPEMPAEEVDVAGRADSPRYGP 359

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
               T+ ++ +              D    +   PV   +           Q+  NY++ 
Sbjct: 360 GPGETRPEMPVFREDFRHETAPDYGDRPPKKPAPPVHAPD----MGLSYLGQVENNYLVF 415

Query: 421 QTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
             + G L++VDQH AHER++FE ++       + S+ L  P  I+L + E  L+ E    
Sbjct: 416 LNSSGRLLVVDQHGAHERVVFEDLKSR--QGSVQSRMLAMPMQIELHQAEKNLLEEIWSM 473

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG   E    + + ++ +P IL+     + LR ++++             ++ IL  
Sbjct: 474 LRSLGFVLELQDESLLQVKGLPDILTSGEGLEALRSMLED---------KARDMDGILIA 524

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC  SI+SG  M   E   L  ++ +    + C HGRP  + L   ++E+LF R
Sbjct: 525 MACRTSIKSGSSMTRDEALSLAHKLMQCKEMNFCPHGRPICMDLGGKELERLFKR 579


>gi|251780192|ref|ZP_04823112.1| DNA mismatch repair protein MutL [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084507|gb|EES50397.1| DNA mismatch repair protein MutL [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 676

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/673 (24%), Positives = 287/673 (42%), Gaps = 81/673 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+E   N+IAAGE++ERP+  +KEL+EN++DA S  +   I  GG S  +I D+G 
Sbjct: 3   RINILNEDTANKIAAGEVVERPASVVKELVENAIDANSKNILIEIEEGGSSLIRIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+I  A   H TSKI  S+D  +I+T GFRGEALPSI +V+ + L ++      G 
Sbjct: 63  GIYKEDIEKAFLPHATSKIKESEDIYSINTLGFRGEALPSIASVARVNLKTKQETEECGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K S V    +N GTI+EVRDLFF +PAR  FLK+   E++LI D+I R+A++ 
Sbjct: 123 EITIEGGKFSEVTECGVNKGTIMEVRDLFFNVPARKKFLKTTSKESSLINDIITRIALSN 182

Query: 180 PKVSFTFSTIK----------SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           P +SF                + +  +            +      D       + ++  
Sbjct: 183 PNISFKLFNNGKKIVHTYGNGNMKDVIRTIYGKSIVENVLYFEDTSDIATIYGYVGKEDI 242

Query: 230 EITLQGYTGIPTFNRGNANQ------------------------------FYVFINGRTV 259
               +    I   +R   N+                               Y+ +N    
Sbjct: 243 ARGSRNNQSIFVNSRYIKNRSLGIAVEQAFKSFSTVSKFPFFILFIEIYPEYIDVNIHPT 302

Query: 260 QD-------KFILSTIRTAYAETIPLGRYPVVVLLLE----------IDPRQVDVNVHPA 302
           +        +FI   I  A   ++    +    +  E          ++  ++   +   
Sbjct: 303 KSEVKFNDERFIFKKIFGAVHTSLKEEVFSTFSIPEEENEATSKNSNLNIEEITFKIEEE 362

Query: 303 KSYIRFRNPTIIRNFIIQS-----IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           +  ++F    +++  I  +     I K I  +     + +   +  + +     K    +
Sbjct: 363 QEKVKFNTNHLLQKNICSTLGDKGINKHIYDEKHKIDTDIHNNIPLNVNLPVDLKCDHIR 422

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------DPVEESEA 401
                 N   K  + EN  +  +   +      E++                  + + + 
Sbjct: 423 LEEDNNNNSNKQIISENNEAKYETPYTSKSNQYENSCKCETDNESKLNVIKTSDLAKEKI 482

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
             +       Q ++ YI+ +    L ++DQHAAHE+++FEK   D N   I  Q L+ P 
Sbjct: 483 PKFPAIKIIGQYNKTYILGEYAGTLYMIDQHAAHEKIMFEKYLNDINCGDIIIQPLMIPT 542

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           +IDL   + +   E+ +     G   E FG  +IA++E+P  L K     L  +I+D + 
Sbjct: 543 VIDLSMDDYSYFEENKDVFKEAGFTIEEFGGTSIALKEVPYFLGKLKPKNLFLEILDNLK 602

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           +  +  T + +   I AT AC  +++    +  +EM +L+ E+    +   C HGRPT I
Sbjct: 603 NLGSGKTTEVKYNAI-ATKACKSAVKGNDSLDELEMVKLIEELRYIDDPFHCPHGRPTII 661

Query: 582 KLKLSDIEKLFGR 594
           +   +DI+K F R
Sbjct: 662 QFTSTDIDKKFRR 674


>gi|270264996|ref|ZP_06193259.1| DNA mismatch repair protein MutL [Serratia odorifera 4Rx13]
 gi|270040930|gb|EFA14031.1| DNA mismatch repair protein MutL [Serratia odorifera 4Rx13]
          Length = 624

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/614 (26%), Positives = 282/614 (45%), Gaps = 56/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  CGIGKEDLALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPIGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R+  + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLIRQYRAAKDESQHERRLGSICGPAFLQHALNISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPAGARQLGEMQYCYVNSRMMRDRLINHAIRQAYQDQLKDEQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++   + + G +  S+  ++                 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQVGTAPLSLADEQDQEPAPAWQPENRVAAG 360

Query: 347 ----QDNAPKTHLPKYATSLTNTQE--------------------KLFLQENRLSTNDLL 382
                  AP+  +   A ++                         KL         +   
Sbjct: 361 GNHFSQPAPRREVQPAAPAVAREPAPQPAYHAGSGYQKREGELYGKLLQAAPAAEPHQET 420

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           P          +       + +  G         Y + ++   L++++   A   L   +
Sbjct: 421 PKQPLFPPVKIERETPLAGSQHSFGRVLMIHPPCYALIESRQQLMLLNLPVAERWLRQAQ 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
           +    +   +  Q LL P  + L + E A  + H   L ++G+  +      + +R +P 
Sbjct: 481 L--SPSEEGLRPQPLLIPIKLTLNKNEVAACVRHQSLLVKMGLDLQS-DHGRVTLRAVPL 537

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQSIEMNRL 560
            L ++N+ +L+ +++  + +             +LAT +A + GS     +  + +  +L
Sbjct: 538 PLRQQNLQKLIPELLGYLAEHQEMSP------AVLATWIARHLGS--EHEQWNTSQAIQL 589

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 590 LTDVERL-----CP 598


>gi|302332902|gb|ADL23095.1| DNA mismatch repair protein MutL [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 669

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/670 (22%), Positives = 285/670 (42%), Gaps = 82/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----KKMISSFHQ------D 348
           HP K  +R      +   I+  IQ+A   + +   + L       K++ SF Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR--------------LSTNDLLPSDDPTYSEDND 394
                +  +   S   +  K F+ EN+              ++        D   S  N+
Sbjct: 359 RQNTENNQEKTFSSEESNSKPFMAENQNDEIVIKEDSYNPFVTKTSESLIADDESSGYNN 418

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E+ +    +      ++ Q +  +     +   +  A+ +      ++   +      
Sbjct: 419 TREKDKDYFKKQQEILQEMDQTFDSN-DDTSVQNYENKASDDYYDVNDIKGTKSKDPKRR 477

Query: 455 QTLL------TPEIIDLLEGECALIMEHDEDLHRLGIKA--ERFGPNAIAIRE--IPAIL 504
              +          I         +++      R+  +   ++ G     +++  IP   
Sbjct: 478 IPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTF 537

Query: 505 SKKNIPQLLRD-----------IIDE-----------------------------IIDSS 524
                 QL+ D           +++                              +I   
Sbjct: 538 HFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEE 597

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +   C HGRP  I   
Sbjct: 598 KKVDIKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAEDPFTCPHGRPIIINFS 657

Query: 585 LSDIEKLFGR 594
             ++EKLF R
Sbjct: 658 KYELEKLFKR 667


>gi|262038761|ref|ZP_06012118.1| DNA mismatch repair protein MutL [Leptotrichia goodfellowii F0264]
 gi|261747219|gb|EEY34701.1| DNA mismatch repair protein MutL [Leptotrichia goodfellowii F0264]
          Length = 648

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 177/660 (26%), Positives = 307/660 (46%), Gaps = 85/660 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E + N IAAGE++E P+  IKE+IENSLDA+++ ++  +  GG    +I DNG G
Sbjct: 4   IKILDESVSNIIAAGEVVENPASMIKEMIENSLDAKATIIKIEVFKGGMD-VKINDNGIG 62

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  ++  ++++RH TSKIS  DD  N++T+GFRGEAL SI AVS LT+ +R   ++TG +
Sbjct: 63  MDKDDTLLSIERHATSKISTKDDVFNLNTYGFRGEALASIAAVSKLTITTRSENSSTGYK 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G  +     V+ N GT +EVRDLF+  PAR  FL+ E  E N I D++ + A+A  
Sbjct: 123 IGSYGGVVRKFEEVSRNVGTEIEVRDLFYNTPARKKFLRKESTEYNKIKDIVLKEALANS 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+FT           +  ++       I ++ G+  + N  +           GY G  
Sbjct: 183 DVAFTLEFDGKQ----SVNTSGKGIENAILELFGKSVLRNLKKFEY--------GYLGNV 230

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + ++N R V+   I   +   Y   +  G+YP V++  +IDP+++DVNVH
Sbjct: 231 EILRSSKDYIFTYVNKRYVKSNTIERAVIDGYYTKLMKGKYPFVIIFFDIDPKEIDVNVH 290

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNA------- 350
           P+K  ++F N  I+   I  +I +     +++G   +  L KK I+  +++         
Sbjct: 291 PSKKIVKFSNDKIVYKQIKDAIDEYFYQSDREGWQPNIDLLKKSINVENKEEKIKDLFSD 350

Query: 351 -----------------------PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                                   K         + +  E   ++EN+   +  L  D  
Sbjct: 351 EVIKGESQKFFSFETHDGDFSAGNKIQERTLEEIIGSNAENNEIKENKEIESSRLLHDTD 410

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF------- 440
            Y  +     E             +I +  I     D  V   +    E+  +       
Sbjct: 411 DYIIEEMNKNEKVFEKSDKIKEELEIKEESIRETGNDYKVGTFEKHTGEQFTYDVLGQIF 470

Query: 441 --------------------------EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
                                     E++++ F+  +  SQ LL P+ +++ E E ++I 
Sbjct: 471 DTYILVRKNNELEIYDQHIIHERILYEELKEKFSGKEHKSQHLLLPQKMEVSEVEKSIIF 530

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           ++ E  +  G   + F  N I  R +PA   + +I  +   ++ ++ + S    ++D  E
Sbjct: 531 DNIEVFNEFGFDIDEFSNNEIVFRAVPAFDFRDSIQNVFLKLLSDLKNESE---IKDLRE 587

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           NI+ +M+C G++++G+K+   EM  ++R + +      C HGRP  +KL   D++K+FGR
Sbjct: 588 NIIISMSCKGAVKAGQKLNMNEMQNMVRRLHEVGK-YTCPHGRPIIVKLTKDDLDKMFGR 646


>gi|281355326|ref|ZP_06241820.1| DNA mismatch repair protein MutL [Victivallis vadensis ATCC
           BAA-548]
 gi|281318206|gb|EFB02226.1| DNA mismatch repair protein MutL [Victivallis vadensis ATCC
           BAA-548]
          Length = 663

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/666 (25%), Positives = 297/666 (44%), Gaps = 79/666 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ +SE++ N+IAAGE+IERP+  +KEL+EN++DA +  +   I   G     + D+G 
Sbjct: 3   KIKVMSEQLSNRIAAGEVIERPASVVKELVENAIDAGARHIRIEIEKAGSRLISVEDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  + ++ H TSKI   +D   I T GFRGEALPSI ++S  ++ +R      G 
Sbjct: 63  GMDGDDALLCIEPHGTSKIFTEEDIDRITTLGFRGEALPSIASISRFSIQTRTSDMLEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G ++    P     GT+++VRDLFF  PAR  FLK+   E + I +++  MA+  
Sbjct: 123 RVRVEGGRLLEAAPAGCPVGTVMQVRDLFFNTPARRKFLKAPATEAHHIEEMVLSMALPR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            +V F         +     ST      RI +  G  F +    ++   N+I + G+   
Sbjct: 183 HEVGFELRMDGRLVFNSPASSTA---EARIREFFGRQFADAMWPVDHAENDIRVTGFVAS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R +  +   FINGR V+   +   IR  YA     GR+P V+L LE+ P +VDVNV
Sbjct: 240 PGFTRNSRKEQRTFINGRAVESPTLYRGIREGYATLNEPGRFPPVILYLEMPPEEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------------- 328
           HPAK  +RF++   I   +  ++ KA+ +                               
Sbjct: 300 HPAKREVRFKHEYAISRAVTAAVSKALKRSREVDYLNDEAENLPLSGQVPLHLVLDSAKI 359

Query: 329 ---------------KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
                            +      + K  S    + +P   +P  A+          ++E
Sbjct: 360 SYTVRDTEQQEFAIPSSVVPPEPPAVKEESPVEPEPSPSRSVPAIASPPVPRFSPSPVRE 419

Query: 374 NRLSTNDLLPS------------------------DDPTYSEDNDPVEESEATHYQLGIA 409
              S                                      +     ++          
Sbjct: 420 LEESPEAAATESAPDAELPPGAKPLFLNDPPPEAPQPREVPPEKHIYPDAPFNGDWPTEI 479

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
              +   YI+     GLV++DQHAAHER++FE + +    T + +Q LL P++++L    
Sbjct: 480 LGVLDDTYILCAGRTGLVMIDQHAAHERIMFEHLLKA-ARTGVPAQPLLLPQLLELPATM 538

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS-KKNIPQLLRDIIDEIIDSSTTYT 528
            +L++ + +    LG   E  G  ++ +  +P  +   + + +L+ D++ E++D+     
Sbjct: 539 SSLLLRNRKVFEVLGFDIEPMGSTSVMLNALPMEMPTHRPLNELIPDMLQELLDN-MANK 597

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           +   +E + A  AC+ +I++  ++       LLR++ +    + C HGRPT + +   +I
Sbjct: 598 MPVELEYV-ARAACHAAIKAHDRLSPEGARELLRQLGECRQGTLCPHGRPTMVTVTFKEI 656

Query: 589 EKLFGR 594
           EK FGR
Sbjct: 657 EKRFGR 662


>gi|323946018|gb|EGB42055.1| DNA mismatch repair protein MutL [Escherichia coli H120]
          Length = 615

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|293476481|ref|ZP_06664889.1| DNA mismatch repair protein mutL [Escherichia coli B088]
 gi|291320934|gb|EFE60376.1| DNA mismatch repair protein mutL [Escherichia coli B088]
          Length = 616

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 2   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 62  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 122 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 182 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 241

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 242 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 302 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 361

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 362 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 421

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 422 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 480 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 539 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 588

Query: 570 SSQCN 574
              C 
Sbjct: 589 ---CP 590


>gi|46445773|ref|YP_007138.1| putative methyl-directed mismatch repair (MMR) protein, mutL
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399414|emb|CAF22863.1| putative methyl-directed mismatch repair (MMR) protein, mutL
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 652

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 174/636 (27%), Positives = 292/636 (45%), Gaps = 45/636 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L+E+ INQIAAGE+IE P+  +KEL+ENS+DA ++ +   I GGG+   +I+DNG 
Sbjct: 6   KIHVLTEQTINQIAAGEVIENPASVVKELVENSMDAGATEICVEIQGGGRQLIRISDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-- 117
           GM+ ++  + ++RH TSKI   DD  NI T GFRGEA+PSI ++S  +L++ P    +  
Sbjct: 66  GMSEDDALLCLERHATSKIKNVDDIENILTMGFRGEAIPSIASISKFSLLTTPQSGVSSI 125

Query: 118 -----GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                G+   + G +I S      +PGT +EV+ LFF +P R  F +S   +T  I  ++
Sbjct: 126 DKLMQGSLTIVEGGRIQSHGKATRSPGTTIEVKSLFFNVPVRRKFQRSPNYDTQEIVKIL 185

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQS----TNGNFPERISQVIGEDFINNAVELNEKS 228
             +++AYP ++F   + + +  KM   S          ++I  ++G++F ++   L   S
Sbjct: 186 TNLSLAYPNIAFELISDQKSILKMPLISIDINHQQQLLKKIETLLGKEFSHSLCPLTFSS 245

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
               ++GY G+P+ ++ N    Y+FIN R V    I   IR  Y   +   RYPV +L L
Sbjct: 246 PPYEIEGYIGLPSIHKPNRTSQYLFINRRAVYSPLIGVAIREGYGTMLGTNRYPVFILHL 305

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---------------- 332
            +     DVNVHP K  +R R    ++  +I ++QKA+ ++                   
Sbjct: 306 RLPGSLFDVNVHPQKKEVRLRQEQKLKETLINAVQKALRQENPHQAFSEMANQVQNETCV 365

Query: 333 -TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              S  S +      +++       K++TS+      +   EN    N+         + 
Sbjct: 366 YPWSAPSFQTPFQVKEESWEFKPNHKFSTSIDENPTFIKNIENLELKNETFNPSSFIQTR 425

Query: 392 DNDPVEESEATHYQ--------------LGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                EE                       +   Q+   +  +Q  +GL+++DQ  A+ R
Sbjct: 426 SLPTKEEPTFFISHQQKAPKVLQTLTGYCLLDACQVKGTFNSNQELNGLLLLDQKQAYSR 485

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           + +EK+  +    +   Q L+ P        E  L+  H E L++LG     FG     +
Sbjct: 486 IKYEKLLFNLKGKQ-AIQQLIVPLTFQFSIPETTLLKTHLESLNQLGFSMREFGNQTFVL 544

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
              P+I+S++ I   L ++I ++     +  LQ +I   LA  A   S     ++   E 
Sbjct: 545 DAFPSIMSEQEIETCLLEMIQDLSTLQQSQQLQIKITEKLALTASRSSFSKNIQLSIDEG 604

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
             L+ ++           G P F   KL ++  LF 
Sbjct: 605 QGLVDQLFMCDMPYLSPSGSPIFAYFKLQELADLFR 640


>gi|320193550|gb|EFW68187.1| DNA mismatch repair protein MutL [Escherichia coli WV_060327]
          Length = 615

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/605 (26%), Positives = 270/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKMVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPLYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLELDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI   +F    + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDF-QFDAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|242237985|ref|YP_002986166.1| DNA mismatch repair protein [Dickeya dadantii Ech703]
 gi|242130042|gb|ACS84344.1| DNA mismatch repair protein MutL [Dickeya dadantii Ech703]
          Length = 629

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/632 (26%), Positives = 282/632 (44%), Gaps = 63/632 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERPS  +KEL+ENSLDA +++++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPSSVVKELVENSLDAGATKIDIEIERGGARLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   ++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIGKADLTLALARHATSKIATLDDLEAIVSLGFRGEALASISSVSRLTLTSRTADQAEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +V+P A   GT +EV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFMHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F          +    +       R+  + G  F+ +A+ ++ +  ++ + G+ 
Sbjct: 181 ARFDVAFNLHHNGKLVRQYRAATDPSQQERRLGSICGAAFLQHALAVSWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++N R ++D+ +   IR AY + +   + P  VL L++DP QVDV
Sbjct: 241 ADPAGSRQLPEMQYCYVNQRMMRDRLLNHAIRQAYQDQLHGEQQPAYVLYLDVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK----------------------------- 328
           NVHPAK  +RF    ++ +FI Q++   + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMSVLQQASSPSLNSGSSALSEGHWQQENRQAAGEN 360

Query: 329 ----------KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                      G S S    +    S+ QD   +    +    L           +  S 
Sbjct: 361 HFARPAAASLNGRSPSGNAKEPQAFSWQQDGGYQKRQGELYQQLLRPAAPPREAGHASSV 420

Query: 379 NDLLPSDDPTYSEDNDPVEES-EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
               PS          PV E  E     LG   A  +  Y + +   G+ ++   AA   
Sbjct: 421 QLTGPSSSSAPETLPLPVSEPLEGHALGLGRVLAIHNGRYALVEHRQGIALLSLTAAERY 480

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           +   ++    +   +  Q LL P+ + L + E   +      L R GI+     P +  +
Sbjct: 481 VHQAQL--TPSEEGLRPQPLLIPQRLSLEKAERDELRRQQPLLTRFGIEV-ALEPTSATL 537

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI-RSGRKMQSIE 556
           + +P  L ++N+  L+ D++  + D           + I A +A    + R+       +
Sbjct: 538 KAVPLPLRQQNLQNLISDLLGYLTDYGHAEP-----DTIAAWIASRLQVERA--DWSIAQ 590

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
             +LL E+E+      C    P  +K   S++
Sbjct: 591 AVQLLAEVERL-----C----PVLVKTPPSEL 613


>gi|317049758|ref|YP_004117406.1| DNA mismatch repair protein MutL [Pantoea sp. At-9b]
 gi|316951375|gb|ADU70850.1| DNA mismatch repair protein MutL [Pantoea sp. At-9b]
          Length = 613

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 171/605 (28%), Positives = 278/605 (45%), Gaps = 49/605 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDVDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIAKDELAMALARHATSKIASLDDLEAIVSLGFRGEALASISSVSRLTLTSRTEAQTEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S +     R+  + G  F+ +A+ ++ + +++ L+G+ 
Sbjct: 181 ARFDVAISLSHNGKLMRQYRGVSQDAQRERRLGAICGTTFMQHALRIDWQHDDLALRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++DK I   IR AY   +   + P  VL LEIDP QVDV
Sbjct: 241 ADPAGSRQVTDLQYCYVNGRMMRDKLINHAIRQAYQTQLGDEQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKKMISSFHQDNAPKT 353
           NVHPAK  +RF    ++ +FI Q +  A+     +      +          ++  A   
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIWQGVMSALQASRAAELPLAHAEEPAPQWQPENRQAAGSN 360

Query: 354 HLPKYATSLT---------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE---- 400
           H  + AT+L            QE  +      +   L+ +     +    P + +     
Sbjct: 361 HFSQPATTLRRSGVSGGGWQPQEPTYSAREGAAYQKLMQTPVSAPAPVKTPADPAPVRKP 420

Query: 401 -------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                  A     G   + I Q Y + +  D L ++    A   L   +++       + 
Sbjct: 421 ESATPLAAHAQSFGRVLSVIRQCYALLERGDTLQLLSLPVAARWLKQAQLQP--GEEGLK 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P  + +   E A+I      L  +GI  +R G + + +R +P  L  +N+  L+
Sbjct: 479 PQPLLIPVRLKVAAEEMAVIGRQSALLTAMGIDLQREGQH-VTLRAVPLPLRTQNLQILI 537

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACY----GSIRSGRKMQSIEMNRLLREMEKNPN 569
            +++  +               +   +A       +          +   LL E+E+   
Sbjct: 538 PELLGYLARQQEVSAF-----ALAQWLARRDDAEAA-----HWNHSQAIALLTELERL-- 585

Query: 570 SSQCN 574
              C 
Sbjct: 586 ---CP 587


>gi|306820529|ref|ZP_07454162.1| DNA mismatch repair protein MutL [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551443|gb|EFM39401.1| DNA mismatch repair protein MutL [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 658

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 176/659 (26%), Positives = 306/659 (46%), Gaps = 74/659 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL + I+  I+AGE+IE P   +KEL+ENS+D++++ V   I  GGKS+ ++TDNG G
Sbjct: 5   IKKLDDNIVKLISAGEVIESPCSVVKELVENSIDSKATSVVVEIKNGGKSYIRVTDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E +  A ++H TSKIS  DDF NI T GFRGEAL SI AV+ +++ ++   +N G  
Sbjct: 65  IGEEYVIEAFKKHTTSKISTFDDFINIGTNGFRGEALASISAVAKISMTTKTADSNYGIT 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++ +K+          GT V V +L   +PAR NFLKS++ E   ITD + R A+A P
Sbjct: 125 VVMNNDKLLEKTKTGAKDGTTVIVEELLENVPARKNFLKSDKAEGAKITDFLIRYALANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-SNEITLQGYTGI 239
            +   +        ++      G   + +  + GE   +  +E++EK S+ ++++G  G 
Sbjct: 185 NIKIRYINNSK---QVFATYATGKVIDVVDIIFGEKHGDKIIEVDEKLSDFLSIRGIIGN 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            +    +    Y+F+NGR ++DK I + I  AY + IP G YP+  L + I P  VDVN+
Sbjct: 242 NSAMYSSRKMQYIFVNGRIIKDKNITAYIENAYKKFIPSGNYPLFFLDIIIKPSMVDVNI 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---------QDNA 350
           HP K  ++F    +I + I  +I   ++   +  +  ++K+     +         ++  
Sbjct: 302 HPNKLEVKFSEEKLIYSLIENAISNKLDNHNMIPTVNIAKEEKEEENIFNDILVNYKNRV 361

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLS-----------TNDLLPSDDPTYSEDNDPVEES 399
            K    K        ++K+ + + R             +   +  D   Y+ +N+  ++ 
Sbjct: 362 QKKEEKKIRPIEEYEEQKIVISKQRQDEEFVYKVDVSVSEAKVEEDKKKYNSENEDRQKE 421

Query: 400 E------------------------------------------ATHYQLGIACAQIHQNY 417
           E                                          +    L     ++   Y
Sbjct: 422 EMVSAEEQVRNNVSEITPLEVNTLSIPKRVVEKEIKTSDKKINSVDLTLLSYGGRVFDTY 481

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+    + + I+DQHAAHER+++E+  ++F S  I  Q LL P+ + +            
Sbjct: 482 IMLYNDEDMYIIDQHAAHERILYERFLREFYSNSIVQQQLLIPQNVVIPVNLVDYSQSII 541

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           E+    G + + FG N I +R IP  L  +   + L ++ +  ++   +    + I++ +
Sbjct: 542 EEASSFGFECDLFGDNIILVRAIPDFLDMEASLRFLDEVFNIYLEEKLSL---ELIKDKI 598

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLR--EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AT AC  +I+        E        ++E   N   C HGRP   +L   ++EK F R
Sbjct: 599 ATKACKAAIKGNDT-SIKEEEIEKIIYDLEHCENKFACPHGRPVITRLSKYEMEKFFKR 656


>gi|50122856|ref|YP_052023.1| DNA mismatch repair protein [Pectobacterium atrosepticum SCRI1043]
 gi|81827002|sp|Q6D065|MUTL_ERWCT RecName: Full=DNA mismatch repair protein mutL
 gi|49613382|emb|CAG76833.1| DNA mismatch repair protein [Pectobacterium atrosepticum SCRI1043]
          Length = 651

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 169/641 (26%), Positives = 283/641 (44%), Gaps = 83/641 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIGKDELTLALARHATSKIATLDDLEAIVSMGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +         +  R+  + G  F+ +A+ ++ +  ++T+ G+ 
Sbjct: 181 ARFDVAITLHHNGKLMRQYRAAPDKNQYERRLGSICGATFLQHALAVSWQHGDLTIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   +  Y ++N R ++D+ I   IR AY + +   + P  VL LEIDP QVDV
Sbjct: 241 ADPVGAKQLPDMQYCYVNQRMMRDRLINHAIRQAYQDQLSDEQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------------------KGI 331
           NVHPAK  +RF    ++ +FI Q++   + +                           G 
Sbjct: 301 NVHPAKQEVRFHQARLVHDFIYQAVMSVLQQASAPRLDMTEPETGKPVQWQQENRPAAGE 360

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
           +  +   +   S  +   AP+T   + + +     E  + ++       LL   D   S 
Sbjct: 361 NHFAQPPRTTNSPSYSGKAPRTGQARESANSGYQPENPYQKKQDELYKALLQPTDNGAST 420

Query: 392 DNDPVEES-------------------------------EATHYQLGIACAQIHQNYIIS 420
               +                                  E+     G         Y + 
Sbjct: 421 PPSGIAAPSTVLHDSCPNRTATNTAASNNKQRALVESPLESQSTGFGRVLTVYPPCYALL 480

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +   GL I+    A   L   ++    +   + +Q LL P+ + L + E  ++  H   L
Sbjct: 481 EYHKGLAILSLPVAERYLKVVQL--TPSEEGLRAQPLLIPQRLTLSKSELNVLSTHHTLL 538

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
            R GI        A  +R +P  L ++N+  L+ ++I  + D  T  T Q   + + + M
Sbjct: 539 TRFGIDVFVESQRA-TLRAVPLPLRQQNLQNLISELIGYLADYQTVETQQVEPDALASWM 597

Query: 541 ACYGSIRSGRKM-------QSIEMNRLLREMEKNPNSSQCN 574
           A         ++          +  +LL ++E+      C 
Sbjct: 598 A--------TRLQSEQENWSHSQAIQLLADVERL-----CP 625


>gi|82779448|ref|YP_405797.1| DNA mismatch repair protein [Shigella dysenteriae Sd197]
 gi|309787674|ref|ZP_07682285.1| DNA mismatch repair protein mutL [Shigella dysenteriae 1617]
 gi|123769505|sp|Q328E9|MUTL_SHIDS RecName: Full=DNA mismatch repair protein mutL
 gi|81243596|gb|ABB64306.1| MutL [Shigella dysenteriae Sd197]
 gi|308924424|gb|EFP69920.1| DNA mismatch repair protein mutL [Shigella dysenteriae 1617]
          Length = 615

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/605 (27%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHCDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-------------- 342
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +                 
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 343 -----SSFHQDNAPK-----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                 +  +  AP+         + A    NTQ     Q+  +    L         + 
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNTQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 393 NDPVEES-EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            +P E +  A     G     +H +  + +    + ++   AA   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPAAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|291279564|ref|YP_003496399.1| DNA mismatch repair protein MutL [Deferribacter desulfuricans SSM1]
 gi|290754266|dbj|BAI80643.1| DNA mismatch repair protein MutL [Deferribacter desulfuricans SSM1]
          Length = 568

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/582 (29%), Positives = 285/582 (48%), Gaps = 32/582 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L + + N+IAAGE++ERP   +KEL+ENSLDA ++++E  +  GG S  ++ DNG 
Sbjct: 3   KINVLPDDVANKIAAGEVVERPFNVVKELVENSLDAGATKIEIELIDGGLSLIKVVDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+ VQR  TSKI+  +D  +I++FGFRGEAL +I +VS  ++ S+      G 
Sbjct: 63  GIDEEDLPLTVQRFATSKITKYEDIFSINSFGFRGEALSAISSVSDFSIKSK------GN 116

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +S   I S+ P A   GTIV V++LF  +PAR  FLKS   E   I   I+ +A+  
Sbjct: 117 ELRVSFGNIISISPAAYTNGTIVTVKNLFEKVPARHKFLKSPTSEYKEILKYIKHIALLN 176

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             VSF           +   +   +  ++I          N        N++ + G    
Sbjct: 177 YNVSFKVINNGKVALNLINDNNLLDRVKKIIGEDYSFIELNF------ENKVKISGVVTT 230

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +   +   + +N R ++D  I   I  AY   +P  RYP+ VL +EI P Q+DVNV
Sbjct: 231 PDVQKFRKDSILIGVNNRAIKDNLIQQAILQAYHRKLPENRYPIAVLNIEISPDQIDVNV 290

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK +IRF N  ++   + ++++  +    +  +S  +  +          K    KY 
Sbjct: 291 HPAKLFIRFYNSNLLFKDVYKAVESCLKNYDLKNNSKGTSDIPLDELNFGGVKEDEIKYT 350

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+N  + + + + + + N+ L             +               Q+    I+
Sbjct: 351 VDLSNIVDVVEINKEKNTKNNDLNLSYRQTLNKEFKI-------------IGQLFDTVIL 397

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  + L ++DQH AHER+++EK     N+  ++S  L  P +I + E      +++   
Sbjct: 398 VEYNNELWLIDQHIAHERVLYEKFMN--NADFVSSVYLTEPLLISIDEELVEFCIKNQAK 455

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L + GI  E+FG N I I  +P+    K+I + +++ I   ++S     L +    I   
Sbjct: 456 LAKCGIDLEQFGKNVIKINSVPSQFLNKDIEKEIKEFIKNSMESILDNDLNEP---IYLN 512

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           M+C  +I++G K+   EMN ++  + K  N   C HGRP   
Sbjct: 513 MSCKLAIKAGDKLLEEEMNDIVSNLLKCENPFTCPHGRPIVY 554


>gi|271502155|ref|YP_003335181.1| DNA mismatch repair protein MutL [Dickeya dadantii Ech586]
 gi|270345710|gb|ACZ78475.1| DNA mismatch repair protein MutL [Dickeya dadantii Ech586]
          Length = 645

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/632 (26%), Positives = 282/632 (44%), Gaps = 71/632 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MSIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++  ++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGISKADLALALARHATSKIATLDDLEAIVSLGFRGEALASISSVSRLTLTSRTDAQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++   +P A   GT +EV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFMHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +    S +     R+  + G  F+ +A+ ++ +  ++ + G+ 
Sbjct: 181 ARFDVAITLHHNGKLIRQYRAVSESAQRERRLGSICGAAFLQHALAVSWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPAGSRQLPEMQYCYVNQRMMRDRLINHAIRQAYQDQLRDEQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK---------GISTSSVLSKKM------- 341
           NVHPAK  +RF    ++ +FI Q++   + +              +S + +         
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMTVLQQAASPGLNGMGDTQMASTVWQPENRTAAGE 360

Query: 342 ----------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
                            S+F    + +   P   +    TQ   + ++       LL ++
Sbjct: 361 NHFARPATPTLTSELRSSAFTARESGEVGRPARESQPARTQTAGYDKKQGELYQRLLHTE 420

Query: 386 DPTYSEDNDPVEESE----------------------ATHYQLGIACAQIHQNYIISQTT 423
                        ++                      +    LG         Y + +  
Sbjct: 421 SSGPQTVAREAPPAQDSLVKPHYVAEKTAVADDLPLASHSLGLGRVLTVYPPAYALVEYR 480

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            GL ++    A   L   ++    N   +  Q LL P+ + L   E A++ +    L  +
Sbjct: 481 QGLALLSLVVAERYLRQAQLTPPQNGEGLRPQPLLIPQRLTLNASELAVVQQQQPLLALM 540

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA-C 542
           GI+ E   P A  +R +P  L ++N+  L+ D++  + DS          + + A +A  
Sbjct: 541 GIEVEVAPPRA-TLRAVPLPLRQQNLQNLISDLLGYLADSHDVKP-----DAVAAWIAGQ 594

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            GS R        +  +LL ++E+      C 
Sbjct: 595 LGSER--ESWTLPQAVQLLSDVERL-----CP 619


>gi|323171601|gb|EFZ57247.1| DNA mismatch repair protein mutL [Escherichia coli LT-68]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 278/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++ L+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLMLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSVLAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|323161959|gb|EFZ47831.1| DNA mismatch repair protein mutL [Escherichia coli E128010]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSITENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|218697919|ref|YP_002405586.1| DNA mismatch repair protein [Escherichia coli 55989]
 gi|254766166|sp|B7LC24|MUTL_ECO55 RecName: Full=DNA mismatch repair protein mutL
 gi|218354651|emb|CAV01641.1| methyl-directed mismatch repair protein [Escherichia coli 55989]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASQDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|157158119|ref|YP_001465668.1| DNA mismatch repair protein [Escherichia coli E24377A]
 gi|157163633|ref|YP_001460951.1| DNA mismatch repair protein [Escherichia coli HS]
 gi|193066000|ref|ZP_03047058.1| DNA mismatch repair protein MutL [Escherichia coli E22]
 gi|209921658|ref|YP_002295742.1| DNA mismatch repair protein [Escherichia coli SE11]
 gi|260847000|ref|YP_003224778.1| methyl-directed mismatch repair protein [Escherichia coli O103:H2
           str. 12009]
 gi|300816530|ref|ZP_07096751.1| DNA mismatch repair protein [Escherichia coli MS 107-1]
 gi|300922424|ref|ZP_07138544.1| DNA mismatch repair protein [Escherichia coli MS 182-1]
 gi|301325933|ref|ZP_07219354.1| DNA mismatch repair protein [Escherichia coli MS 78-1]
 gi|307314882|ref|ZP_07594474.1| DNA mismatch repair protein MutL [Escherichia coli W]
 gi|309796981|ref|ZP_07691381.1| DNA mismatch repair protein [Escherichia coli MS 145-7]
 gi|167017338|sp|A7ZV39|MUTL_ECO24 RecName: Full=DNA mismatch repair protein mutL
 gi|167017339|sp|A8A7R4|MUTL_ECOHS RecName: Full=DNA mismatch repair protein mutL
 gi|238058933|sp|B6I274|MUTL_ECOSE RecName: Full=DNA mismatch repair protein mutL
 gi|157069313|gb|ABV08568.1| DNA mismatch repair protein MutL [Escherichia coli HS]
 gi|157080149|gb|ABV19857.1| DNA mismatch repair protein MutL [Escherichia coli E24377A]
 gi|192926323|gb|EDV80959.1| DNA mismatch repair protein MutL [Escherichia coli E22]
 gi|209914917|dbj|BAG79991.1| DNA mismatch repair protein [Escherichia coli SE11]
 gi|257762147|dbj|BAI33644.1| methyl-directed mismatch repair protein [Escherichia coli O103:H2
           str. 12009]
 gi|269852789|gb|ACZ50724.1| MutL [Escherichia coli]
 gi|300421243|gb|EFK04554.1| DNA mismatch repair protein [Escherichia coli MS 182-1]
 gi|300530760|gb|EFK51822.1| DNA mismatch repair protein [Escherichia coli MS 107-1]
 gi|300847286|gb|EFK75046.1| DNA mismatch repair protein [Escherichia coli MS 78-1]
 gi|306905685|gb|EFN36214.1| DNA mismatch repair protein MutL [Escherichia coli W]
 gi|308119394|gb|EFO56656.1| DNA mismatch repair protein [Escherichia coli MS 145-7]
 gi|315063484|gb|ADT77811.1| methyl-directed mismatch repair protein [Escherichia coli W]
 gi|323182276|gb|EFZ67686.1| DNA mismatch repair protein mutL [Escherichia coli 1357]
 gi|323380437|gb|ADX52705.1| DNA mismatch repair protein MutL [Escherichia coli KO11]
 gi|324019348|gb|EGB88567.1| DNA mismatch repair protein [Escherichia coli MS 117-3]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|320200700|gb|EFW75286.1| DNA mismatch repair protein MutL [Escherichia coli EC4100B]
          Length = 615

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEI+P QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIEPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|295398603|ref|ZP_06808635.1| DNA mismatch repair protein HexB [Aerococcus viridans ATCC 11563]
 gi|294973204|gb|EFG48999.1| DNA mismatch repair protein HexB [Aerococcus viridans ATCC 11563]
          Length = 687

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 152/686 (22%), Positives = 279/686 (40%), Gaps = 101/686 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L  ++ NQIAAGE++ERP+  +KEL+EN++DA +S +   I   G    Q+ DNG
Sbjct: 1   MAIQELPIQVANQIAAGEVVERPASVVKELVENAIDAGASEIAIHIKEAGLRSIQVIDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ ++++ +A +RH TSKI  S D   I T GFRGEALPSI +VS +T+ +      + 
Sbjct: 61  RGIAADQVGLAFKRHATSKIYSSSDLFRIRTLGFRGEALPSIASVSEVTMNT--SDGESS 118

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++I I   ++   +  A+  GT V V +LF+  PARL +LKS Q E   ITD+I R A+ 
Sbjct: 119 SEIYIKDGEVVDQKSSALRRGTSVLVENLFYNTPARLKYLKSLQTELAHITDIINREALG 178

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P + F ++        +   +  G   E ++ + G     + V +  ++ +  + GY  
Sbjct: 179 HPDIRFNYTHDGK---TLLSTNGKGRVNEVLAAIYGFRQAKDMVTIEGENLDFHISGYVS 235

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P   R + +   +F+NGR +++  +   I   Y   + +GRYP+ V+ +E+DP+ +DVN
Sbjct: 236 LPAVTRASKSYMSLFVNGRFIKNYKLNQAILKGYGSKLMVGRYPIAVIYIELDPQLIDVN 295

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------SSVLSKK 340
           VHP K  +R      + + I   I  A+                         S      
Sbjct: 296 VHPTKQEVRISKEDDLYDMIKTGIIDALAPVQRIPDVYADGEGDDGQSVNNSDSFASQSS 355

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-- 398
             +++   + P T+L + A+   +  +      ++ +       +  +   D D  EE  
Sbjct: 356 GQNNYRPLSQPTTYLGEQASLDFSASQSRHGSNSQQNDTSPFSGNGFSKIFDEDVHEEVK 415

Query: 399 ---------------------SEATHYQLGIACAQIHQNYIIS----------QTTDGLV 427
                                     +   ++ A +     +           QT + + 
Sbjct: 416 QSVQVPTYLWDEAQVVQAESLENEADHSDEVSVAYLDTEQEVDLPKSHNKPIWQTVNQVR 475

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA---LIMEHDEDLHRLG 484
            +DQ      + F ++                  +  + +           + + +   G
Sbjct: 476 ALDQAIVDRNMSFPELTYVGQMQGTYLVAENETGMYLVDQHAAQERIKYEYYRDTIVEFG 535

Query: 485 -----------IKAERFGPNAI-AIREIPAILS-----KKNIPQLLRDIIDEIIDSSTTY 527
                                I  IR  P +L      +   P   +  + +        
Sbjct: 536 TAMQSLLLPIVFDFSNSEAQEIDQIR--PKLLKMGIDLEPFGPNAFQ--LQQHPIWMGKK 591

Query: 528 TLQDRIENILA-------------------TMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
            +Q  +E+++A                    M+C  SI++   +  ++  +LL ++    
Sbjct: 592 NVQKIVEDLIALVLEDPKATVGNYREATAIMMSCKRSIKANHYLDDMQAKQLLHDLAYTK 651

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
           N   C HGRP  +     +IE++F R
Sbjct: 652 NPYNCPHGRPVLVHFSNYEIERMFKR 677


>gi|91213719|ref|YP_543705.1| DNA mismatch repair protein [Escherichia coli UTI89]
 gi|91075293|gb|ABE10174.1| MutL, enzyme in methyl-directed mismatch repair [Escherichia coli
           UTI89]
          Length = 616

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 2   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 62  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 122 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 182 ARFDVTISLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 241

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 242 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 302 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 361

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 362 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 421

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 422 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 480 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 539 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 588

Query: 570 SSQCN 574
              C 
Sbjct: 589 ---CP 590


>gi|110644527|ref|YP_672257.1| DNA mismatch repair protein [Escherichia coli 536]
 gi|117626517|ref|YP_859840.1| DNA mismatch repair protein [Escherichia coli APEC O1]
 gi|191174525|ref|ZP_03036023.1| DNA mismatch repair protein MutL [Escherichia coli F11]
 gi|218561329|ref|YP_002394242.1| DNA mismatch repair protein [Escherichia coli S88]
 gi|237703837|ref|ZP_04534318.1| MutL [Escherichia sp. 3_2_53FAA]
 gi|300988653|ref|ZP_07178793.1| DNA mismatch repair protein [Escherichia coli MS 200-1]
 gi|123048577|sp|Q0T9M3|MUTL_ECOL5 RecName: Full=DNA mismatch repair protein mutL
 gi|166232087|sp|A1AJ76|MUTL_ECOK1 RecName: Full=DNA mismatch repair protein mutL
 gi|226723034|sp|B7MKX4|MUTL_ECO45 RecName: Full=DNA mismatch repair protein mutL
 gi|110346119|gb|ABG72356.1| DNA mismatch repair protein MutL [Escherichia coli 536]
 gi|115515641|gb|ABJ03716.1| MutL, enzyme in methyl-directed mismatch repair [Escherichia coli
           APEC O1]
 gi|190905205|gb|EDV64846.1| DNA mismatch repair protein MutL [Escherichia coli F11]
 gi|218368098|emb|CAR05905.1| methyl-directed mismatch repair protein [Escherichia coli S88]
 gi|226901749|gb|EEH88008.1| MutL [Escherichia sp. 3_2_53FAA]
 gi|294490783|gb|ADE89539.1| DNA mismatch repair protein MutL [Escherichia coli IHE3034]
 gi|300305886|gb|EFJ60406.1| DNA mismatch repair protein [Escherichia coli MS 200-1]
 gi|307629241|gb|ADN73545.1| DNA mismatch repair protein [Escherichia coli UM146]
 gi|315288451|gb|EFU47849.1| DNA mismatch repair protein [Escherichia coli MS 110-3]
 gi|323950761|gb|EGB46639.1| DNA mismatch repair protein MutL [Escherichia coli H252]
 gi|323955457|gb|EGB51221.1| DNA mismatch repair protein MutL [Escherichia coli H263]
 gi|324013812|gb|EGB83031.1| DNA mismatch repair protein [Escherichia coli MS 60-1]
          Length = 615

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTISLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|228474975|ref|ZP_04059703.1| DNA mismatch repair protein MutL [Staphylococcus hominis SK119]
 gi|228270960|gb|EEK12348.1| DNA mismatch repair protein MutL [Staphylococcus hominis SK119]
          Length = 674

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/674 (24%), Positives = 294/674 (43%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAKATEINIEVEQSGISSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSKI+  DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEQDDLQLVFHRHATSKINDDDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I S +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGEILSQKPAKAKKGTDIKVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F+  +      K N    +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PNIRFSLISDGKTMLKTN---GSGRTNEVMAEIYGIKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFALNKAITEGYHTLLTIGRYPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQD----NA 350
           HP K  +R      + N II+ I+ A   + +   + L +     K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEEQLYNLIIEKIRHAFKDRILIPKNDLDRTPKKNKVLHTFEQQKIDFEQ 358

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--SEDNDPVEESEATHYQLGI 408
            + ++      L N  +      N  ST      ++ T   S   +  E S   + +  +
Sbjct: 359 KQQNISNKIKQLENKNDPNVSTNNTFSTISSQYDEEHTSDDSYTREDNEHSSVYNNKRSM 418

Query: 409 ACAQIHQNYIISQTTDGLV-IVDQHAAHERLIF-----EKMRQDFNSTK----------- 451
                     I  + D     +D     E  I+     E  +++  + K           
Sbjct: 419 DKDYFDIQKDILNSLDRAESSIDNTRHDETNIYNYDENEDFQENVTNQKEQDIKGKVSST 478

Query: 452 -------ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--ERFGPNAIAIRE--I 500
                  +     +    I         +++      R+  +   E+ G  +  +++  I
Sbjct: 479 PSRRVPYMEVVGQVHGTYIIAQNENGMFMIDQHAAQERIKYEYFREKIGEVSNEVQDLLI 538

Query: 501 PAILSKKNIPQLLRD-------------------------------------IIDEIID- 522
           P         QL+ D                                     II ++I+ 
Sbjct: 539 PLTFHFSKDEQLIIDQYREELDKVGVHLEHFGGYDYIVNSYPVWFPKVEAEEIIKDMIEL 598

Query: 523 --SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
             +     ++   E+    M+C  SI++   ++  EM  L+ ++ +  +   C HGRP  
Sbjct: 599 VLNHKKIDVKKMREDAAIMMSCKKSIKANHYLKKNEMADLIDQLREAEDPFTCPHGRPII 658

Query: 581 IKLKLSDIEKLFGR 594
           I     ++EKLF R
Sbjct: 659 INFSNYELEKLFKR 672


>gi|310765333|gb|ADP10283.1| DNA mismatch repair protein [Erwinia sp. Ejp617]
          Length = 608

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/545 (29%), Positives = 268/545 (49%), Gaps = 25/545 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  CGIDKDELAMALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTEAQSEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S +G    R+  + G  F+ +A+++  + +E++L G+ 
Sbjct: 181 ARFDVAISLSHNGKLVRQYRAVSDDGQRERRLGAICGTAFLTHALKIAWQHSELSLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  ++  +   Y ++NGR ++D+ I   IR AY + +     P  VL LEIDP QVDV
Sbjct: 241 ADPVGSKALSELQYCYVNGRMMRDRLINHAIRQAYQDKLGDRHQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +   + + G  T   + + +       +N       
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVISVLQESGAETLPEIATVQPAERRQPENRQAAGGN 360

Query: 357 KYATSLT-------------NTQEKLFLQENRLSTNDLLP-----SDDPTYSEDNDPVEE 398
            ++T                  QE L+ +        LL       + P  S   +    
Sbjct: 361 HFSTPAAAAPRPASPGGGSWQRQEPLYQKREGAVYQQLLQTPARSEEPPPASAAPNKEPP 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                +  G     + + Y + +  +GL ++    A   L   ++  +  S  +  Q LL
Sbjct: 421 LSGHTHSFGRVLTVVQEQYALLEGKNGLALLALAVAARWLKQAQL--EPGSEGLKPQPLL 478

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  + L + E          L+++GI   +F  + + +R +P  L ++N+  L+ +++ 
Sbjct: 479 IPLRLKLDKAERDAGSRCSTLLNQMGIDL-QFDAHHVMLRAVPLPLRQQNLQNLIPEMLG 537

Query: 519 EIIDS 523
            +   
Sbjct: 538 YLTRH 542


>gi|312965843|ref|ZP_07780069.1| DNA mismatch repair protein mutL [Escherichia coli 2362-75]
 gi|312289086|gb|EFR16980.1| DNA mismatch repair protein mutL [Escherichia coli 2362-75]
          Length = 615

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQNFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|256025105|ref|ZP_05438970.1| DNA mismatch repair protein [Escherichia sp. 4_1_40B]
          Length = 615

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQPALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|30065542|ref|NP_839713.1| DNA mismatch repair protein [Shigella flexneri 2a str. 2457T]
 gi|56480585|ref|NP_710035.2| DNA mismatch repair protein [Shigella flexneri 2a str. 301]
 gi|81839355|sp|Q83P35|MUTL_SHIFL RecName: Full=DNA mismatch repair protein mutL
 gi|30043806|gb|AAP19525.1| enzyme in methyl-directed mismatch repair [Shigella flexneri 2a
           str. 2457T]
 gi|56384136|gb|AAN45742.2| enzyme in methyl-directed mismatch repair [Shigella flexneri 2a
           str. 301]
 gi|281603632|gb|ADA76616.1| DNA mismatch repair protein mutL [Shigella flexneri 2002017]
 gi|313646355|gb|EFS10817.1| DNA mismatch repair protein mutL [Shigella flexneri 2a str. 2457T]
 gi|332749046|gb|EGJ79469.1| DNA mismatch repair protein mutL [Shigella flexneri K-671]
 gi|332749314|gb|EGJ79735.1| DNA mismatch repair protein mutL [Shigella flexneri 4343-70]
 gi|332761919|gb|EGJ92193.1| DNA mismatch repair protein mutL [Shigella flexneri 2747-71]
 gi|332763217|gb|EGJ93460.1| mutL [Shigella flexneri 2930-71]
 gi|333009218|gb|EGK28674.1| DNA mismatch repair protein mutL [Shigella flexneri K-218]
 gi|333010317|gb|EGK29750.1| DNA mismatch repair protein mutL [Shigella flexneri VA-6]
 gi|333011152|gb|EGK30566.1| DNA mismatch repair protein mutL [Shigella flexneri K-272]
 gi|333012045|gb|EGK31430.1| DNA mismatch repair protein mutL [Shigella flexneri K-304]
 gi|333012654|gb|EGK32034.1| DNA mismatch repair protein mutL [Shigella flexneri K-227]
          Length = 615

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|307298255|ref|ZP_07578059.1| DNA mismatch repair protein MutL [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916341|gb|EFN46724.1| DNA mismatch repair protein MutL [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 598

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 179/607 (29%), Positives = 314/607 (51%), Gaps = 22/607 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I +L   ++ +IAAGE++      +KEL+ENS+DA +S VE  I  GGK +  + DNG
Sbjct: 1   MRIHELPTDVVRKIAAGEVVTGCFSVVKELVENSIDAGASLVEIEIRSGGKEYIMVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GMT++E  +A++ H TSKIS  +D  ++ TFGFRGEAL +I +VS + L +       G
Sbjct: 61  SGMTNQEAKLAIKPHTTSKISSIEDLDSLITFGFRGEALSTIASVSRMRLSTAADSEELG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + I+G  ++  +P++ + GT VEV DL +  PAR  FLKS  +E  ++T++I+R  +A
Sbjct: 121 TILEIAGGSVTGQKPLSGSNGTFVEVFDLLYNTPARRKFLKSASIEGRMVTEMIQRFILA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +  V F +S      +        G+  +RI+ +       + + ++  S EI + GY  
Sbjct: 181 FENVDFVYSRDSQTVFDTR---GAGSLQDRIALIYPGISTRDLIPVSGDSGEIKVNGYVT 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +P+  R N     +F+N R V+   +   +   Y ET+  G +P  VL ++IDP++VDVN
Sbjct: 238 LPSRTRKNRMGENIFVNRRYVRQFELNYALERGYGETLQKGNFPFAVLFIDIDPQEVDVN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-----------KKMISSFHQ 347
           +HP K  ++F +   + + + ++++ AI   G  T +++            +K +S  +Q
Sbjct: 298 IHPQKLEVKFASTAAVLDEVKRAVRSAIKGAGHFTINIVHSEENITGSSEERKDVSEIYQ 357

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           D+    H  K+        +         S  D           + +   E E +     
Sbjct: 358 DHEVSNHGFKHPWRNQKVFDNNASDTYTQSRIDRHHFRSFALGGEREGSPEKEKSGEGKV 417

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
                  + Y+I+++ DGL+++DQHAAHER+IFE ++    S +I  Q LL P  ++L  
Sbjct: 418 SFIGVFGERYLIAESEDGLLLIDQHAAHERIIFETLK---ESKRIAPQNLLMPLELNLER 474

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
               L++  +E L +LG   +      I +  IP ++  + +  +L +I+DE+       
Sbjct: 475 SRMDLVIAREETLKKLGFTFDFVNDKIIMV-SIPQVMGVEGVVDVLEEILDEMRLEGLED 533

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
             +   +N+LA++AC  +IR+G ++   +   L  E+ +  N   C HGRP  + ++L D
Sbjct: 534 P-KTVFDNLLASIACKAAIRTGNRLDIGQAEELFEELRR-KNLLVCPHGRPISMVIRLED 591

Query: 588 IEKLFGR 594
           +++ F R
Sbjct: 592 LDRYFSR 598


>gi|260858323|ref|YP_003232214.1| methyl-directed mismatch repair protein [Escherichia coli O26:H11
           str. 11368]
 gi|257756972|dbj|BAI28474.1| methyl-directed mismatch repair protein [Escherichia coli O26:H11
           str. 11368]
 gi|323156013|gb|EFZ42175.1| DNA mismatch repair protein mutL [Escherichia coli EPECa14]
          Length = 615

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 279/605 (46%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
             ++E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PELQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|300905999|ref|ZP_07123723.1| DNA mismatch repair protein [Escherichia coli MS 84-1]
 gi|300949129|ref|ZP_07163171.1| DNA mismatch repair protein [Escherichia coli MS 116-1]
 gi|300957829|ref|ZP_07170007.1| DNA mismatch repair protein [Escherichia coli MS 175-1]
 gi|301302586|ref|ZP_07208716.1| DNA mismatch repair protein [Escherichia coli MS 124-1]
 gi|300315460|gb|EFJ65244.1| DNA mismatch repair protein [Escherichia coli MS 175-1]
 gi|300402166|gb|EFJ85704.1| DNA mismatch repair protein [Escherichia coli MS 84-1]
 gi|300451377|gb|EFK14997.1| DNA mismatch repair protein [Escherichia coli MS 116-1]
 gi|300842111|gb|EFK69871.1| DNA mismatch repair protein [Escherichia coli MS 124-1]
 gi|315255514|gb|EFU35482.1| DNA mismatch repair protein [Escherichia coli MS 85-1]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|218556722|ref|YP_002389636.1| DNA mismatch repair protein [Escherichia coli IAI1]
 gi|226723035|sp|B7M8T0|MUTL_ECO8A RecName: Full=DNA mismatch repair protein mutL
 gi|218363491|emb|CAR01145.1| methyl-directed mismatch repair protein [Escherichia coli IAI1]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVEQL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|16131992|ref|NP_418591.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|89110890|ref|AP_004670.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12
           substr. W3110]
 gi|170083616|ref|YP_001732936.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|194439524|ref|ZP_03071598.1| DNA mismatch repair protein MutL [Escherichia coli 101-1]
 gi|238903277|ref|YP_002929073.1| methyl-directed mismatch repair protein [Escherichia coli BW2952]
 gi|253775205|ref|YP_003038036.1| DNA mismatch repair protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254037184|ref|ZP_04871261.1| methyl-directed mismatch repair protein mutL [Escherichia sp.
           1_1_43]
 gi|254164099|ref|YP_003047207.1| DNA mismatch repair protein [Escherichia coli B str. REL606]
 gi|300929277|ref|ZP_07144753.1| DNA mismatch repair protein [Escherichia coli MS 187-1]
 gi|301027992|ref|ZP_07191276.1| DNA mismatch repair protein [Escherichia coli MS 196-1]
 gi|301646615|ref|ZP_07246481.1| DNA mismatch repair protein [Escherichia coli MS 146-1]
 gi|307140864|ref|ZP_07500220.1| DNA mismatch repair protein [Escherichia coli H736]
 gi|331644917|ref|ZP_08346034.1| DNA mismatch repair protein MutL [Escherichia coli H736]
 gi|127552|sp|P23367|MUTL_ECOLI RecName: Full=DNA mismatch repair protein mutL
 gi|229486327|sp|B1XDS1|MUTL_ECODH RecName: Full=DNA mismatch repair protein mutL
 gi|259509930|sp|C5A1G1|MUTL_ECOBW RecName: Full=DNA mismatch repair protein mutL
 gi|17017338|gb|AAL33626.1|AF440199_1 MutL [Escherichia coli]
 gi|42067|emb|CAA77850.1| MutL Protein [Escherichia coli]
 gi|537011|gb|AAA97066.1| CG Site No. 470; alternate gene name mut-25 [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1790612|gb|AAC77127.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|85676921|dbj|BAE78171.1| methyl-directed mismatch repair protein [Escherichia coli str. K12
           substr. W3110]
 gi|169891451|gb|ACB05158.1| methyl-directed mismatch repair protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|194421523|gb|EDX37536.1| DNA mismatch repair protein MutL [Escherichia coli 101-1]
 gi|226840290|gb|EEH72292.1| methyl-directed mismatch repair protein mutL [Escherichia sp.
           1_1_43]
 gi|238861767|gb|ACR63765.1| methyl-directed mismatch repair protein [Escherichia coli BW2952]
 gi|253326249|gb|ACT30851.1| DNA mismatch repair protein MutL [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976000|gb|ACT41671.1| DNA mismatch repair protein [Escherichia coli B str. REL606]
 gi|253980156|gb|ACT45826.1| DNA mismatch repair protein [Escherichia coli BL21(DE3)]
 gi|260451003|gb|ACX41425.1| DNA mismatch repair protein MutL [Escherichia coli DH1]
 gi|269852795|gb|ACZ50725.1| MutL [Escherichia coli]
 gi|299878902|gb|EFI87113.1| DNA mismatch repair protein [Escherichia coli MS 196-1]
 gi|300462770|gb|EFK26263.1| DNA mismatch repair protein [Escherichia coli MS 187-1]
 gi|301075162|gb|EFK89968.1| DNA mismatch repair protein [Escherichia coli MS 146-1]
 gi|309704675|emb|CBJ04025.1| DNA mismatch repair protein [Escherichia coli ETEC H10407]
 gi|313848821|emb|CAQ34516.2| MutL, subunit of MutHLS complex, methyl-directed mismatch repair
           [Escherichia coli BL21(DE3)]
 gi|315138724|dbj|BAJ45883.1| DNA mismatch repair protein [Escherichia coli DH1]
 gi|323935400|gb|EGB31744.1| DNA mismatch repair protein MutL [Escherichia coli E1520]
 gi|323940089|gb|EGB36283.1| DNA mismatch repair protein MutL [Escherichia coli E482]
 gi|323970575|gb|EGB65834.1| DNA mismatch repair protein MutL [Escherichia coli TA007]
 gi|331035892|gb|EGI08130.1| DNA mismatch repair protein MutL [Escherichia coli H736]
 gi|332346247|gb|AEE59581.1| DNA mismatch repair protein MutL [Escherichia coli UMNK88]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|218692504|ref|YP_002400716.1| DNA mismatch repair protein [Escherichia coli ED1a]
 gi|306815615|ref|ZP_07449764.1| DNA mismatch repair protein [Escherichia coli NC101]
 gi|254766167|sp|B7MSY3|MUTL_ECO81 RecName: Full=DNA mismatch repair protein mutL
 gi|218430068|emb|CAR11058.2| methyl-directed mismatch repair protein [Escherichia coli ED1a]
 gi|305851277|gb|EFM51732.1| DNA mismatch repair protein [Escherichia coli NC101]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|26251062|ref|NP_757102.1| DNA mismatch repair protein [Escherichia coli CFT073]
 gi|26111494|gb|AAN83676.1|AE016771_187 DNA mismatch repair protein mutL [Escherichia coli CFT073]
          Length = 616

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 2   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 62  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 122 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 182 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 241

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 242 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 302 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 361

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 362 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 421

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 422 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 480 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 539 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 588

Query: 570 SSQCN 574
              C 
Sbjct: 589 ---CP 590


>gi|227886787|ref|ZP_04004592.1| DNA mismatch repair protein [Escherichia coli 83972]
 gi|300987265|ref|ZP_07178094.1| DNA mismatch repair protein [Escherichia coli MS 45-1]
 gi|301045958|ref|ZP_07193142.1| DNA mismatch repair protein [Escherichia coli MS 185-1]
 gi|29427778|sp|Q8FAK9|MUTL_ECOL6 RecName: Full=DNA mismatch repair protein mutL
 gi|227836360|gb|EEJ46826.1| DNA mismatch repair protein [Escherichia coli 83972]
 gi|300302041|gb|EFJ58426.1| DNA mismatch repair protein [Escherichia coli MS 185-1]
 gi|300407742|gb|EFJ91280.1| DNA mismatch repair protein [Escherichia coli MS 45-1]
 gi|307556337|gb|ADN49112.1| methyl-directed mismatch repair protein [Escherichia coli ABU
           83972]
 gi|312948819|gb|ADR29646.1| DNA mismatch repair protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|324005233|gb|EGB74452.1| DNA mismatch repair protein [Escherichia coli MS 57-2]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|260870922|ref|YP_003237324.1| methyl-directed mismatch repair protein [Escherichia coli O111:H-
           str. 11128]
 gi|257767278|dbj|BAI38773.1| methyl-directed mismatch repair protein [Escherichia coli O111:H-
           str. 11128]
 gi|323176072|gb|EFZ61664.1| DNA mismatch repair protein mutL [Escherichia coli 1180]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 278/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|315617583|gb|EFU98189.1| DNA mismatch repair protein mutL [Escherichia coli 3431]
          Length = 615

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +      NG    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPENGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P +     A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNYTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLT---------NTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +              +  + ++       LL +         
Sbjct: 361 NHFAEPAVREPAAPRYSPAPAAGSRQAATWPNVQPGYQKQQGEVYRQLLQTPASMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEAQEPALAANSQSFGRVLTIVHSDCALLERDGKISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI+ +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIEFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|194426576|ref|ZP_03059130.1| DNA mismatch repair protein MutL [Escherichia coli B171]
 gi|194415315|gb|EDX31583.1| DNA mismatch repair protein MutL [Escherichia coli B171]
          Length = 615

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGVICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSITENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|331660745|ref|ZP_08361677.1| DNA mismatch repair protein MutL [Escherichia coli TA206]
 gi|315299051|gb|EFU58305.1| DNA mismatch repair protein [Escherichia coli MS 16-3]
 gi|331051787|gb|EGI23826.1| DNA mismatch repair protein MutL [Escherichia coli TA206]
          Length = 615

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGANQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|301023432|ref|ZP_07187215.1| DNA mismatch repair protein [Escherichia coli MS 69-1]
 gi|300397019|gb|EFJ80557.1| DNA mismatch repair protein [Escherichia coli MS 69-1]
          Length = 615

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 275/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-------------- 342
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +                 
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 343 -----SSFHQDNAPK-----THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                 +F +  AP+         + A    N Q     Q+  +    L         + 
Sbjct: 361 NHFAEPAFREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 393 NDPVEES-EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            +P E +  A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|256019815|ref|ZP_05433680.1| DNA mismatch repair protein [Shigella sp. D9]
 gi|332280954|ref|ZP_08393367.1| DNA mismatch repair protein mutL [Shigella sp. D9]
 gi|332103306|gb|EGJ06652.1| DNA mismatch repair protein mutL [Shigella sp. D9]
          Length = 615

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LG+  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGVDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|293417673|ref|ZP_06660295.1| DNA mismatch repair protein mutL [Escherichia coli B185]
 gi|291430391|gb|EFF03389.1| DNA mismatch repair protein mutL [Escherichia coli B185]
          Length = 615

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 278/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|315293548|gb|EFU52900.1| DNA mismatch repair protein [Escherichia coli MS 153-1]
          Length = 615

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVSQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|284924352|emb|CBG37468.1| DNA mismatch repair protein [Escherichia coli 042]
          Length = 616

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 270/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 2   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 62  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 122 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  + +++TL+G+ 
Sbjct: 182 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHSDLTLRGWV 241

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 242 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 302 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 361

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 362 NHFAEPAVCEPVAPRYTPAPSSGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 421

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 422 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 480 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRSVPLPLRQQNLQI 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 539 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 588

Query: 570 SSQCN 574
              C 
Sbjct: 589 ---CP 590


>gi|331650295|ref|ZP_08351367.1| DNA mismatch repair protein MutL [Escherichia coli M605]
 gi|281181266|dbj|BAI57596.1| DNA mismatch repair protein [Escherichia coli SE15]
 gi|330908512|gb|EGH37031.1| DNA mismatch repair protein MutL [Escherichia coli AA86]
 gi|331040689|gb|EGI12847.1| DNA mismatch repair protein MutL [Escherichia coli M605]
          Length = 615

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRNMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPSSGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|293393216|ref|ZP_06637531.1| DNA mismatch repair protein MutL [Serratia odorifera DSM 4582]
 gi|291424362|gb|EFE97576.1| DNA mismatch repair protein MutL [Serratia odorifera DSM 4582]
          Length = 627

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 158/617 (25%), Positives = 270/617 (43%), Gaps = 59/617 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   ++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  SGIGKADLALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTAEQPEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++   V+P A   G+ VEV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVMVKPAAHPVGSTVEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R+  + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAAKEESQHERRLGSICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPAGARQLGELQYCYVNSRMMRDRLINHAIRQAYQDQLKDDQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK----- 352
           NVHPAK  +RF    ++ +FI Q++   + + G +   +              P+     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQLGSAPLPLAEATDAPDPAPAWQPENRVAA 360

Query: 353 --THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------- 393
              H  + A     +         R        +      E                   
Sbjct: 361 GGNHFSQPAPRREPSAASPTAARERTPQPYHGGASGYQKREGELYGRLMQATTEPAATPA 420

Query: 394 --------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                                 + +  G         Y + +    L +++   A   L 
Sbjct: 421 VETAKVPLFPAPKAAQEMPLAGSQHGFGRVLMVYPPCYALLEQRQQLALLNLPVAERWLR 480

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
             ++        +  Q LL P  + L   E +    H   L ++G++  +     + +R 
Sbjct: 481 QAQLNPP--EEGLRPQPLLIPLKLTLRNNEASACTRHQALLVKMGLEL-QVDHGRVTLRA 537

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQSIEM 557
           +P  L ++N+ +L+ +++  + +             +LAT +A + GS    ++  S + 
Sbjct: 538 VPLPLRQQNLQKLIPELLGYLAEHHEMSPT------VLATWIARHIGS--EHQQWNSSQA 589

Query: 558 NRLLREMEKNPNSSQCN 574
            +LL ++E+      C 
Sbjct: 590 IQLLTDVERL-----CP 601


>gi|323975489|gb|EGB70590.1| DNA mismatch repair protein MutL [Escherichia coli TW10509]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRTIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGGRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++      T 
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGETP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|323189951|gb|EFZ75229.1| DNA mismatch repair protein mutL [Escherichia coli RN587/1]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKMVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLELDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|300821261|ref|ZP_07101409.1| DNA mismatch repair protein [Escherichia coli MS 119-7]
 gi|331671075|ref|ZP_08371908.1| DNA mismatch repair protein MutL [Escherichia coli TA271]
 gi|331680300|ref|ZP_08380959.1| DNA mismatch repair protein MutL [Escherichia coli H591]
 gi|300526150|gb|EFK47219.1| DNA mismatch repair protein [Escherichia coli MS 119-7]
 gi|331061664|gb|EGI33590.1| DNA mismatch repair protein MutL [Escherichia coli TA271]
 gi|331071763|gb|EGI43099.1| DNA mismatch repair protein MutL [Escherichia coli H591]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|218702867|ref|YP_002410496.1| DNA mismatch repair protein [Escherichia coli IAI39]
 gi|218372853|emb|CAR20732.2| methyl-directed mismatch repair protein [Escherichia coli IAI39]
          Length = 616

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 2   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 62  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 122 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 182 ARFDVTINLSHNGKMVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 241

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 242 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 302 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 361

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 362 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 421

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     IH +  + +    + ++    A   L   ++        
Sbjct: 422 PEPQEPALAANSQSFGRVLTIIHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 480 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 539 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 588

Query: 570 SSQCN 574
              C 
Sbjct: 589 ---CP 590


>gi|296100937|ref|YP_003611083.1| DNA mismatch repair protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055396|gb|ADF60134.1| DNA mismatch repair protein [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 614

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/603 (26%), Positives = 282/603 (46%), Gaps = 42/603 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTIKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +  G    R+  + G  F+  A+ +  +  ++ L+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAEGGQKERRLGAICGTPFLEQALAIEWQHGDLALRGWV 240

Query: 238 GIPT-FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   +   A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNASSAAFAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN------- 349
           VNVHPAK  +RF    ++ +FI Q +   + ++   T  +  ++  S    +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQVEPTLPLEKEEPASRPIPENRVAAGRN 360

Query: 350 -------APKTHLPKYATSLTNTQ---------EKLFLQENRLSTNDLLPSDDPTYSEDN 393
                  A +   P+++++ +  +         +  + ++       LL +   T  E +
Sbjct: 361 HFAEPAVAREPEAPRFSSAGSAPRPTGANYPNAQPGYQKQQGALYRKLLETPAVTRKEHS 420

Query: 394 DPVEES-EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +    S E      G     I  +  + +    L+++    A      ++++        
Sbjct: 421 EVQAPSLEGHSQSFGRVLTIIAPDMALLEREGKLMLLALPVAERW--LKQVQLTPGENAA 478

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL P  + +   E  ++   +  L ++GI+        + IR +P  L ++N+  L
Sbjct: 479 CAQPLLIPVRLKISTEETRVLQRAEAQLAQMGIEM-VLESQHVTIRAVPLPLRQQNLQNL 537

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  +   +T              +A + +          +   +L E+E+      
Sbjct: 538 IPELIGYLAQQTTFDAANTAQW-----IARHLA-SEHTPWSMAQAISVLAEVERL----- 586

Query: 573 CNH 575
           C H
Sbjct: 587 CPH 589


>gi|331655998|ref|ZP_08356986.1| DNA mismatch repair protein MutL [Escherichia coli M718]
 gi|331046352|gb|EGI18442.1| DNA mismatch repair protein MutL [Escherichia coli M718]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|251788130|ref|YP_003002851.1| DNA mismatch repair protein [Dickeya zeae Ech1591]
 gi|247536751|gb|ACT05372.1| DNA mismatch repair protein MutL [Dickeya zeae Ech1591]
          Length = 649

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/636 (26%), Positives = 280/636 (44%), Gaps = 75/636 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   ++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIGKADLALALARHATSKIATLDDLEAIVSLGFRGEALASISSVSRLTLTSRTEAQAEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +V+P A   GT +EV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFMHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +    S       R+  + G  F+ +A+ ++ +  ++ + G+ 
Sbjct: 181 ARFDVAITLHHNGKLIRQYRAVSEPAQRERRLGSICGAAFLQHALAVSWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPVGSRQLPEMQYCYVNQRMMRDRLINHAIRQAYQDQLRDEQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------- 344
           NVHPAK  +RF    ++ +FI Q++   + +      S +     ++             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMTVLQQAASPRLSGVGDAQAAAATWQPENRIAAGE 360

Query: 345 --FHQDNAPKTHLPK---------------YATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             F +    K  +P+                      TQ   + ++       LL ++  
Sbjct: 361 NHFARPAVQKQDMPEAVPPAKTAGAAGRQVREPQPPRTQATGYQKKQGELYQQLLHTESS 420

Query: 388 TYSEDNDPVEES----------------------------EATHYQLGIACAQIHQNYII 419
                                                   E+    LG   A     Y +
Sbjct: 421 RPHSVARDTSPEKDSPAKDSPAVRRETPEKTAVAAESLSLESHALGLGRVLAVYPPAYAL 480

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +   G  ++    A   L   ++    +   +  Q LL P+ + L   E A++ +    
Sbjct: 481 VEYRQGPALLSLTVAERYLRQAQLTPSASGEGLRPQPLLIPQRLTLNASELAVMQQQLPL 540

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  +GI+ E   P A  +R +P  L ++N+  L+ D++  + DS          + + A 
Sbjct: 541 LTLMGIEVELSPPRA-TLRAVPLPLRQQNLQNLISDLLGYLADSHDVKP-----DAVAAW 594

Query: 540 MA-CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +A   GS R    +   +  +LL ++E+      C 
Sbjct: 595 IAGQLGSERENWTL--AQAVQLLADVERL-----CP 623


>gi|324118735|gb|EGC12627.1| DNA mismatch repair protein MutL [Escherichia coli E1167]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 278/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|312974023|ref|ZP_07788194.1| DNA mismatch repair protein mutL [Escherichia coli 1827-70]
 gi|310331557|gb|EFP98813.1| DNA mismatch repair protein mutL [Escherichia coli 1827-70]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|323965556|gb|EGB61010.1| DNA mismatch repair protein MutL [Escherichia coli M863]
 gi|327250110|gb|EGE61829.1| DNA mismatch repair protein mutL [Escherichia coli STEC_7v]
          Length = 615

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/605 (26%), Positives = 271/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPTLAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++      T 
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGETP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|170766784|ref|ZP_02901237.1| DNA mismatch repair protein MutL [Escherichia albertii TW07627]
 gi|170124222|gb|EDS93153.1| DNA mismatch repair protein MutL [Escherichia albertii TW07627]
          Length = 615

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +      NG    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPENGQKERRLGAICGTAFLEQALAIAWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P +     A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNYTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQSAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLT---------NTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +              +  + ++       LL +         
Sbjct: 361 NHFAEPAVREPAAPRYSPAPAAGSRQAATWPNAQPGYQKQQGEVYRQLLQTPASMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  +      + ++    A   L   ++        
Sbjct: 421 PEAQEPALAANSQSFGRVLTIVHSDCALLDRDGKISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI+ +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIEFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|188494580|ref|ZP_03001850.1| DNA mismatch repair protein MutL [Escherichia coli 53638]
 gi|188489779|gb|EDU64882.1| DNA mismatch repair protein MutL [Escherichia coli 53638]
          Length = 615

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALSVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|317493567|ref|ZP_07951988.1| DNA mismatch repair protein MutL [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918510|gb|EFV39848.1| DNA mismatch repair protein MutL [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 638

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/626 (26%), Positives = 279/626 (44%), Gaps = 66/626 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL S+ +VS LT+ SR  + N  
Sbjct: 61  CGINKDELALALARHATSKITSLDDLEAIMSLGFRGEALASVSSVSRLTMTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT VEV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTVEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+           +      +G    R+  + G  FI +A+E+  +  ++ + G+ 
Sbjct: 181 ARFDVTIQLHHNGKMIRQYRAVKEDGQKDRRLGSICGTAFIQHALEIKWEHGDLAIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++NGR ++DK I   IR AY + +   + P  VL L +DP QVDV
Sbjct: 241 AGPVGSRQLTEMQYSYVNGRMMRDKLITHAIRQAYQDQLKDDQQPAYVLYLTVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +        ++      +  +N     + +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVISVLQQSEQPALPEMAADEAPRWEPENRVAAGVNQ 360

Query: 358 YATSLTNTQEKLF----------------------------------------LQENRLS 377
           ++ +        +                                        + E R+ 
Sbjct: 361 FSKTPLREASPAYGHSSTQGQASDKKKPSDNRHFSSGDGYQKREGQLYQRLMQVPEKRMP 420

Query: 378 TNDLLPSDDPTYSEDNDPVEE---------SEATHYQLGIACAQIHQNYIISQTTDGLVI 428
            +  + S    +   N    E          E      G       Q++ + +   G+ +
Sbjct: 421 QSQEIQSSSELFPVVNPRKPELFPQPAPALFEHGESSFGRVLTIYEQHFALLERQHGIAL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           ++  AA   +   +++    +  +  Q LL P  + L   E   +    E L  LGI   
Sbjct: 481 LNLDAAE--IELRRVQLLPGTEGLRPQPLLIPVKLTLSADEIQGVQSCSERLKHLGIDL- 537

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
                 + +R +P  L  +N+PQL+   +  + +     +  + I   LA+   +  I  
Sbjct: 538 VLERQRVTLRAVPLPLRHQNLPQLIPAFLSFLAEQPNAES--ETISKWLAS---HL-ITE 591

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCN 574
             +    +  +LL E+E+      C 
Sbjct: 592 REQWTVSQAIQLLAELERL-----CP 612


>gi|293407897|ref|ZP_06651737.1| DNA mismatch repair protein mutL [Escherichia coli B354]
 gi|291472148|gb|EFF14630.1| DNA mismatch repair protein mutL [Escherichia coli B354]
          Length = 616

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 2   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 62  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 122 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 182 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 241

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 242 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 302 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 361

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 362 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 421

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 422 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 480 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 538

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 539 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 588

Query: 570 SSQCN 574
              C 
Sbjct: 589 ---CP 590


>gi|170681264|ref|YP_001746565.1| DNA mismatch repair protein [Escherichia coli SMS-3-5]
 gi|300940657|ref|ZP_07155218.1| DNA mismatch repair protein [Escherichia coli MS 21-1]
 gi|331665834|ref|ZP_08366728.1| DNA mismatch repair protein MutL [Escherichia coli TA143]
 gi|226723037|sp|B1LQJ0|MUTL_ECOSM RecName: Full=DNA mismatch repair protein mutL
 gi|170518982|gb|ACB17160.1| DNA mismatch repair protein MutL [Escherichia coli SMS-3-5]
 gi|300454545|gb|EFK18038.1| DNA mismatch repair protein [Escherichia coli MS 21-1]
 gi|331056885|gb|EGI28879.1| DNA mismatch repair protein MutL [Escherichia coli TA143]
          Length = 615

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|110808088|ref|YP_691608.1| DNA mismatch repair protein [Shigella flexneri 5 str. 8401]
 gi|123047666|sp|Q0SXB2|MUTL_SHIF8 RecName: Full=DNA mismatch repair protein mutL
 gi|110617636|gb|ABF06303.1| DNA mismatch repair protein [Shigella flexneri 5 str. 8401]
          Length = 627

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 157/553 (28%), Positives = 262/553 (47%), Gaps = 32/553 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSS 524
           L+ ++I  +   S
Sbjct: 538 LIPELIGYLAKQS 550


>gi|42518562|ref|NP_964492.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii NCC 533]
 gi|81832287|sp|Q74KW0|MUTL_LACJO RecName: Full=DNA mismatch repair protein mutL
 gi|41582847|gb|AAS08458.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii NCC 533]
          Length = 630

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 184/635 (28%), Positives = 290/635 (45%), Gaps = 53/635 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA S R+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSKRIRIDFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ + +    N  G 
Sbjct: 63  GIAKDQIDLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVTT-SNDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG +       A   GT + V DLFF  PARL +L+SE+ E   I D++ R+A+ +
Sbjct: 122 RAIFSGSEKKLQEDAASPKGTKITVSDLFFNTPARLKYLRSERTEILKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT +        +   +   +  + I+ + G         L  KS +  + G    
Sbjct: 182 PDVSFTLTNNGK---VLLKTNGRDDLRQDIANIYGRQLAEKMNILKGKSPDFEISGLISD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSNRNFISLLLNGRYIKNYRLTQAIMAGYGNKLRPRRYPIAVVKIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------------------SV 336
           HP K  +R      +   +  SI +A+ +     S                        V
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALEQNNQIDSGLNNLLAPKKSTNIDQLKFNLNKDV 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATS----------------LTNTQEKLFLQENRLSTND 380
           ++      F     P  +   + T                 +T+T      Q+ +LS  D
Sbjct: 359 VNTARPVEFTPQVEPDQNAEVHETGANFVSLDQVRNDDKYVITSTWNDNVNQQVQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A +        Q  ++Y+I+   + L ++DQ  A+ RL +
Sbjct: 419 EEKDMQGKDDSIISSGDEILANNLPELTYMGQT-KSYLIAHHEEDLYLIDQVNAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++ QD NS  I+ Q LL+P I+D    +   + E+ E+L   G+  E FG N++ +R  
Sbjct: 478 DQILQDLNSENISQQGLLSPLILDFSNVDYLKLKENLENLQEFGLFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL--ATMACYGSIRSGRKMQSIEMN 558
           P  L + +  + +R I+D  ++  T + +      I    TM    S R  R +  +E  
Sbjct: 538 PMWL-QPDAEKNVRMILDLYLNQ-TEHDISKLKAQIAGEITM--RQSARR-RMLNPVEAQ 592

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            LL+E+  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 593 ELLKELRNSSDPYQDFEGKIIIIQLSENDLNKMFK 627


>gi|313673031|ref|YP_004051142.1| DNA mismatch repair protein mutl [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939787|gb|ADR18979.1| DNA mismatch repair protein MutL [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 566

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/599 (30%), Positives = 292/599 (48%), Gaps = 38/599 (6%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I KL   I N+IAAGE++ERP   +KEL+ENS+DA + ++E  I  GG S  +++D
Sbjct: 1   MPSEIIKLPSDISNKIAAGEVVERPFNVVKELLENSIDAGADKIEIEINDGGLSLIKVSD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+   ++P  ++R+ TSKI   +D  +I+++GFRGEAL +I +VS   + S+    +
Sbjct: 61  NGRGILPNDLPNTIERYATSKIKRFEDIYSINSYGFRGEALAAISSVSDFKIHSKRDGYD 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  +  +  +   ++P  +  GTIVEV +LF  IP R  FLK+   E   I   I+  +
Sbjct: 121 -GFVLIKNFGENFVIKPSPIPNGTIVEVANLFQKIPVRKKFLKNSNSEYREILKFIKCFS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                V+            +   ++  +  ++I         ++  EL      ++++G 
Sbjct: 180 SINFNVTLKLIKDGEVVLDLLKDNSMIDRVKKIFN------ESSLFELKNTYGSLSIEGV 233

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P   +   +   + +N R V+D  I+ +I  AY   +P  RYP   + L I    +D
Sbjct: 234 LSTPNNQKFRKDYLIISVNKRIVKDFGIMQSIINAYHRLMPENRYPFAFINLNITGDDLD 293

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  ++F N   I +F+  SI+  +N   +S+S V      S+   D   + + P
Sbjct: 294 VNVHPTKMAVKFFNSNDIFSFVYDSIKAELNSLTLSSSHV----TQSNQEPDKKDEIYQP 349

Query: 357 KYATSLTNTQ-EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           K      N   EK+   E  +S  +   +   T  E                    Q+ +
Sbjct: 350 KNPELKYNIDLEKILSSEKDISVRESYSNYSDTDKEI---------------KIIGQLFK 394

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             I+ +  D LV +DQH AHER+++EK +   NS  I S  L  P I+D+ + +  ++ +
Sbjct: 395 TVILCEINDELVFIDQHIAHERVLYEKYKSMKNS--IPSIVLYEPIIMDVSQEDREILSK 452

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
           + E L++ G + E FG ++I I  IP+ L K +  + L+DII+EI     +    D+I  
Sbjct: 453 NIELLNKFGFEIEFFGKDSIKISSIPSSLIKSDPVEELKDIIEEINSLKVSE--NDKIPL 510

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I   M+C  +I+SG  +   EM  L+  + K  N   C HGRP   K+    I K F R
Sbjct: 511 I---MSCKNAIKSGDYLTDFEMEELVTNLFKTTNPYTCPHGRPIIFKMSKETIYKKFHR 566


>gi|157368676|ref|YP_001476665.1| DNA mismatch repair protein [Serratia proteamaculans 568]
 gi|167012378|sp|A8G8U7|MUTL_SERP5 RecName: Full=DNA mismatch repair protein mutL
 gi|157320440|gb|ABV39537.1| DNA mismatch repair protein MutL [Serratia proteamaculans 568]
          Length = 624

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/614 (26%), Positives = 278/614 (45%), Gaps = 56/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  SGIGKDDLALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTAEQNEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPIGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +         +  R+  + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAAKDESQYERRLGSICGPAFLQHALNISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPAGARQLGEMQYCYVNSRMMRDRLINHAIRQAYQDQLKDDQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST----------SSVLSKKMISSFHQ 347
           NVHPAK  +RF    ++ +FI Q++   + + G +            + + +        
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQVGNAPLPLTDETEQQPTPVWQPENRVAAG 360

Query: 348 DNAPKTHLPKYATSLTNTQ-------------------------EKLFLQENRLSTNDLL 382
            N      P+  T+ T                             KL             
Sbjct: 361 GNHFSQPAPRRETASTEPAVARERAPQPAYHSGSGYQKREGELYGKLLQATPVAEPRQEA 420

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           P          +       + +  G         Y + +    L++++   A   L   +
Sbjct: 421 PKQPLFPPVKTEQETPLAGSQHSFGRVLMIYPPCYALIENGQQLMLLNLPVAERWLRQAQ 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
           +  + +   +  Q LL P  + L + E A  + H   L  +G+   +     + +R +P 
Sbjct: 481 L--NPSQEGLRPQPLLIPIKLTLNKQEAAACIHHQPLLVTMGLDL-QVDHGRVTLRAVPL 537

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQSIEMNRL 560
            L ++N+ +L+ +++  + +             +LAT  A + GS     +  + +  +L
Sbjct: 538 PLRQQNLQKLIPELLGYLAEHQEMSP------AVLATWFARHLGS--EHEQWNTSQAIQL 589

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 590 LTDVERL-----CP 598


>gi|292493408|ref|YP_003528847.1| DNA mismatch repair protein MutL [Nitrosococcus halophilus Nc4]
 gi|291582003|gb|ADE16460.1| DNA mismatch repair protein MutL [Nitrosococcus halophilus Nc4]
          Length = 604

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 185/613 (30%), Positives = 299/613 (48%), Gaps = 41/613 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   + NQIAAGE++ERP+  +KEL+EN+LDA + R+E     GG    ++ D+G 
Sbjct: 8   RIQLLPPALANQIAAGEVVERPASVLKELVENALDAGAQRIEIESEAGGIGLIRVRDDGC 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A+  H TSKI   +   NI T GFRGEAL SI AVSHL+L SR      G 
Sbjct: 68  GIHPEDLCLALSSHATSKIRQQEQLLNITTLGFRGEALASISAVSHLSLNSRVVNEEYGW 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     + ++V+PVA   GT VEVRDLF+  PAR  FL+ E+ E   +   + R+A+++
Sbjct: 128 CLR----ENTAVQPVAHPVGTTVEVRDLFYNTPARRRFLRGEKTEFMHLRATLERLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            +VSF  S  +   + +     + +  +RI+++ G+ F  +++    +   + L G+ G 
Sbjct: 184 FEVSFRVSYNRRPLFTLPSCLRSPDQLKRIAKICGQAFTEHSLYFKREIEGLRLWGWLGH 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R   N  Y ++N R V+D+ +    R AY   +P GR+P  +L LE+ P QVDVN 
Sbjct: 244 PEFCRSQTNLQYFYVNQRMVRDRLLTHATRQAYGNRLPPGRHPAYLLYLELPPSQVDVNA 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP--- 356
           HPAK+ +RFR    +  F+++++ + + +     +   +     S    +     +P   
Sbjct: 304 HPAKNEVRFREARQVHGFVVRTLTEILEQAESEGAPKPTADAPLSGDAPHGSPLEVPICS 363

Query: 357 -------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                  +     T  + +L+           LP      S   +  E S      LG A
Sbjct: 364 QQTGQALQPKPHGTPHKGRLYPVAEAAEHYSPLPRGSRIPSRKGNHNESS-----LLGQA 418

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            A +   Y++++   GLV+VD  AA  RL   ++R  +    IT Q LL P    +   +
Sbjct: 419 QALVLGRYLLAENHQGLVLVDLPAARARLAQARLRAAYARDHITRQPLLLPLTFKVSPQQ 478

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
                +H  +L  LG    R GP+ + +REIPA L + N+ Q L  ++  + +       
Sbjct: 479 AEWTEQHASELLTLGFGLHRLGPSVVVLREIPASLRELNLEQWLPALLTRLTEQQQEKLE 538

Query: 530 QDRIENILATMACYGSIRSGR-------KMQSIEMNRLLREMEKNPNSSQC-NH--GRPT 579
           +  ++ I+ +        +GR            EMN LLRE+EK     Q       +P 
Sbjct: 539 ETPLKEIIVSF-------TGRYPAPTISPPSLQEMNVLLRELEKL---YQNEPDLKSKPP 588

Query: 580 FIKLKLSDIEKLF 592
           +  L  + IE+ F
Sbjct: 589 WHALPKNKIEEWF 601


>gi|168754739|ref|ZP_02779746.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4401]
 gi|168766447|ref|ZP_02791454.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774119|ref|ZP_02799126.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780600|ref|ZP_02805607.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784805|ref|ZP_02809812.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC869]
 gi|168801823|ref|ZP_02826830.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC508]
 gi|195935960|ref|ZP_03081342.1| DNA mismatch repair protein [Escherichia coli O157:H7 str. EC4024]
 gi|208806122|ref|ZP_03248459.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812969|ref|ZP_03254298.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818355|ref|ZP_03258675.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398397|ref|YP_002273712.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4115]
 gi|254796189|ref|YP_003081026.1| DNA mismatch repair protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225290|ref|ZP_05939571.1| methyl-directed mismatch repair protein [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255458|ref|ZP_05947991.1| methyl-directed mismatch repair protein [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285582|ref|YP_003502400.1| DNA mismatch repair protein MutL [Escherichia coli O55:H7 str.
           CB9615]
 gi|238058932|sp|B5Z2H6|MUTL_ECO5E RecName: Full=DNA mismatch repair protein mutL
 gi|187770214|gb|EDU34058.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4196]
 gi|189001632|gb|EDU70618.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357920|gb|EDU76339.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364233|gb|EDU82652.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374786|gb|EDU93202.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC869]
 gi|189376066|gb|EDU94482.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC508]
 gi|208725923|gb|EDZ75524.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734246|gb|EDZ82933.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738478|gb|EDZ86160.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159797|gb|ACI37230.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750298|gb|ACI73456.1| enzyme in methyl-directed mismatch repair [Escherichia coli]
 gi|209750302|gb|ACI73458.1| enzyme in methyl-directed mismatch repair [Escherichia coli]
 gi|209750304|gb|ACI73459.1| enzyme in methyl-directed mismatch repair [Escherichia coli]
 gi|209750306|gb|ACI73460.1| enzyme in methyl-directed mismatch repair [Escherichia coli]
 gi|254595589|gb|ACT74950.1| methyl-directed mismatch repair protein [Escherichia coli O157:H7
           str. TW14359]
 gi|290765455|gb|ADD59416.1| DNA mismatch repair protein MutL [Escherichia coli O55:H7 str.
           CB9615]
 gi|320190698|gb|EFW65348.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638928|gb|EFX08574.1| DNA mismatch repair protein [Escherichia coli O157:H7 str. G5101]
 gi|320644297|gb|EFX13362.1| DNA mismatch repair protein [Escherichia coli O157:H- str. 493-89]
 gi|320649615|gb|EFX18139.1| DNA mismatch repair protein [Escherichia coli O157:H- str. H 2687]
 gi|320655011|gb|EFX22972.1| DNA mismatch repair protein [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320660518|gb|EFX27979.1| DNA mismatch repair protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665787|gb|EFX32824.1| DNA mismatch repair protein [Escherichia coli O157:H7 str. LSU-61]
 gi|326345498|gb|EGD69241.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           1125]
          Length = 615

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 270/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---------- 346
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGR 360

Query: 347 -------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|188588377|ref|YP_001921075.1| DNA mismatch repair protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498658|gb|ACD51794.1| DNA mismatch repair protein MutL [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 676

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 175/677 (25%), Positives = 289/677 (42%), Gaps = 89/677 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+E   N+IAAGE++ERP+  +KEL+EN++DA S  +   I  GG S  +I D+G 
Sbjct: 3   RINILNEDTANKIAAGEVVERPASVVKELVENAIDANSKNILIEIEEGGSSLIRIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+I  A   H TSKI +  D  +I+T GFRGEALPSI +VS + L ++      G 
Sbjct: 63  GIYKEDIEKAFLPHATSKIKEPEDIYSINTLGFRGEALPSIASVSKVNLKTKQETEECGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K S V    +N GTI+EVRDLFF +PAR  FLK+   E++LI D+I R+A++ 
Sbjct: 123 EITIEGGKFSEVTECGVNKGTIMEVRDLFFNVPARKKFLKTTSKESSLINDIITRIALSN 182

Query: 180 PKVSFTFSTI----------KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           P +SF                + +  +            +      D       + ++  
Sbjct: 183 PNISFKLFNNGKKIIHTYGNGNMKDVIRTIYGKSIVENILYFEDTCDIATIYGYVGKEDI 242

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +    I   +R   N+    +     Q     ST+       + +  YP   + + 
Sbjct: 243 ARGSRNNQSIFVNSRYIKNR---SLGIAVEQAFKSFSTVSKFPFFILFIEIYPEY-IDVN 298

Query: 290 IDP--RQVDVN------------VHPAKSYIRF--------RNPTIIR------NFIIQS 321
           I P   +V  N            VH +     F             I+        I   
Sbjct: 299 IHPTKSEVKFNDERFIFKRIFSAVHTSLKEEVFNTFSIPEEEKEATIKNSNLNIEEITFK 358

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKT---------------------------- 353
           I++   K  ++T+ +  K + S+F  ++  K                             
Sbjct: 359 IEEEQEKVKLNTNHLSQKNICSTFEDNSINKHIYDEKHKIDTDIYNNIPLNVNIPVDLKC 418

Query: 354 -HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA----------- 401
            H+     + +N+ +++  + +         S    Y        ++E+           
Sbjct: 419 DHIRLEEDNNSNSNKQVISENSEAKYETFYTSKSDQYEHSYKCETDNESKLNVIETSDLV 478

Query: 402 ----THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                 +       Q ++ YI+ +    L ++DQHAAHE+++FEK   D N   I  Q L
Sbjct: 479 KEKIPKFPPIKIIGQYNKTYILGEYAGTLYMIDQHAAHEKIMFEKYLNDINCGDIIIQPL 538

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           + P +IDL   + +   E+ +     G   E FG  +IA++E+P  L K     L  +I+
Sbjct: 539 MIPTVIDLSMDDYSYFEENKDVFKEAGFTIEEFGGTSIALKEVPYFLGKLKPKNLFLEIL 598

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D + +  +  T + +   I AT AC  +++    +  +EM +L+ E+    +   C HGR
Sbjct: 599 DNLKNLGSGKTTEVKYNAI-ATKACKSAVKGNDSLDELEMVKLIEELRYIDDPFHCPHGR 657

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT I+   +DI+K F R
Sbjct: 658 PTIIQFTSTDIDKKFRR 674


>gi|283786849|ref|YP_003366714.1| DNA mismatch repair protein [Citrobacter rodentium ICC168]
 gi|282950303|emb|CBG89950.1| DNA mismatch repair protein [Citrobacter rodentium ICC168]
          Length = 621

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/609 (26%), Positives = 276/609 (45%), Gaps = 49/609 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I +++RR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVVRQYRAVAQDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALAEIQYCYVNGRMMRDRLINHAIRQACEDRLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   + +    +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQRLEAPLPLATDDEPAPRQVPENRIAAGR 360

Query: 345 ---FHQDNAPKTHLPKYATSLT------------NTQEKLFLQENRLSTNDLLPSDDPTY 389
                   A +T  P+YAT                  +  + ++       LL +  P  
Sbjct: 361 NHFAEPAQARETASPRYATPSAAGGGSRPASAAWPHAQPGYQKQQGEVYRQLLQTPVPAS 420

Query: 390 SEDNDPVEES----EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +      E      E      G     I  +  + +    + ++    A   L   ++  
Sbjct: 421 ASKTPAAEAPAPALEGHSQSFGRVLTIIAHDCALLERDGQIQLLALPVAERWLRQAQLMP 480

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                ++ +Q LL P  + +   E A + +  + L  LGI+ +      + +R +P  L 
Sbjct: 481 --GQGQVCAQPLLIPLRLKVTADEKAALEKARDTLTALGIEFQS-DAQHVTVRAVPLPLR 537

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           ++++  L+ ++I  +   S               ++ +       +    +   LL ++E
Sbjct: 538 QQSLQNLIPELIGYLTQKSAPEPDTLARWIARNLLSEHA------QWTMAQAITLLADVE 591

Query: 566 KNPNSSQCN 574
           +      C 
Sbjct: 592 RL-----CP 595


>gi|297622075|ref|YP_003710212.1| putative DNA mismatch repair protein mutL [Waddlia chondrophila WSU
           86-1044]
 gi|297377376|gb|ADI39206.1| putative DNA mismatch repair protein mutL [Waddlia chondrophila WSU
           86-1044]
          Length = 582

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/596 (29%), Positives = 289/596 (48%), Gaps = 24/596 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E+ INQIAAGE++E P+  +KEL ENSLDA ++ +   I  GG+   +ITDNG 
Sbjct: 4   KIQVLDEQTINQIAAGEVVENPASVVKELAENSLDAGATEITAEIRAGGRQLIRITDNGA 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  ++++RH TSKI   +D  +++T GFRGEA+PSI ++S LT+++R  +   G 
Sbjct: 64  GMSGEDALLSLERHATSKIRGIEDLYDVYTMGFRGEAVPSIASISKLTILTRSVEEKKGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G K+    PV  +PGT +EV  LFF +P R  F +S   ++N +  V+  +A+  
Sbjct: 124 LIYVEGGKLLKNCPVERDPGTTMEVDSLFFNVPVRKKFQRSPTYDSNEVLKVLSMLALTR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT  +      K    +T G+F  RI +V+G++F      L+ +   I L+G+ G+
Sbjct: 184 PDVKFTLISQGKTLLK----ATQGDFKRRIEEVLGKEFSCGLCPLSFEKEGIKLEGFVGL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +NR N    Y+FINGR V    I   ++  Y   +   RYPV VL L I    VDVNV
Sbjct: 240 PYYNRHNRTGQYLFINGRAVFSPLISFAVKEGYGTAMGTHRYPVFVLRLSIPGSLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R R     +  I ++++KA++   I   + +   +  ++    A         
Sbjct: 300 HPQKKEVRLRQEQQFKQLIAEAVEKALS-HEILPETTVETPLPFTYSPSLASLPDKVSIE 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                T++      +           +P  +    P+   E+      +  A +    ++
Sbjct: 359 ERFYTTEDSAI---DFKEWMIREAESEPVETSKTAPLFPQESADAPPSV-LATVPGFILV 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
             + + L  V    AH R+++E +           Q LL P   D    E A I EH E 
Sbjct: 415 QTSKEKLYWVSARNAHARVLYEAL-DKNYLPATQIQQLLIPLNFDFSPIEAAAIREHLEI 473

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---LQDRIENI 536
           L + G+  + FG N+ AI  IP +  +  +  LL  I  E  ++S       +Q  + + 
Sbjct: 474 LEKWGLGIKEFGRNSFAIDAIPRLWDETKLEDLLHSIAKEAAETSKPERKLFVQTVVNSA 533

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            A           + +   +   L+ ++ ++ N   C  G+PT  ++   +I KLF
Sbjct: 534 FAK---------DQMLSQAQAQALINQLHQSKNHRFCPLGKPTAAEILEEEIAKLF 580


>gi|215489514|ref|YP_002331945.1| DNA mismatch repair protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|254766165|sp|B7UQH9|MUTL_ECO27 RecName: Full=DNA mismatch repair protein mutL
 gi|215267586|emb|CAS12041.1| methyl-directed mismatch repair protein [Escherichia coli O127:H6
           str. E2348/69]
          Length = 615

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPLYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLELDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|74314655|ref|YP_313074.1| DNA mismatch repair protein [Shigella sonnei Ss046]
 gi|187733395|ref|YP_001882861.1| DNA mismatch repair protein [Shigella boydii CDC 3083-94]
 gi|193070863|ref|ZP_03051795.1| DNA mismatch repair protein MutL [Escherichia coli E110019]
 gi|300920806|ref|ZP_07137207.1| DNA mismatch repair protein [Escherichia coli MS 115-1]
 gi|123732234|sp|Q3YUH3|MUTL_SHISS RecName: Full=DNA mismatch repair protein mutL
 gi|238691726|sp|B2TY45|MUTL_SHIB3 RecName: Full=DNA mismatch repair protein mutL
 gi|73858132|gb|AAZ90839.1| enzyme in methyl-directed mismatch repair [Shigella sonnei Ss046]
 gi|187430387|gb|ACD09661.1| DNA mismatch repair protein MutL [Shigella boydii CDC 3083-94]
 gi|192955809|gb|EDV86280.1| DNA mismatch repair protein MutL [Escherichia coli E110019]
 gi|300412229|gb|EFJ95539.1| DNA mismatch repair protein [Escherichia coli MS 115-1]
 gi|320173676|gb|EFW48866.1| DNA mismatch repair protein MutL [Shigella dysenteriae CDC 74-1112]
 gi|320187048|gb|EFW61759.1| DNA mismatch repair protein MutL [Shigella flexneri CDC 796-83]
 gi|323166652|gb|EFZ52410.1| DNA mismatch repair protein mutL [Shigella sonnei 53G]
 gi|332087043|gb|EGI92177.1| DNA mismatch repair protein mutL [Shigella boydii 3594-74]
          Length = 615

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 270/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|238750069|ref|ZP_04611572.1| DNA mismatch repair protein mutL [Yersinia rohdei ATCC 43380]
 gi|238711613|gb|EEQ03828.1| DNA mismatch repair protein mutL [Yersinia rohdei ATCC 43380]
          Length = 632

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/585 (27%), Positives = 268/585 (45%), Gaps = 55/585 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  Q N  
Sbjct: 61  CGISKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAQQNEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +       R++ + G  F+  A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAATDPSQHERRLASICGPAFLQQALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------------- 336
           NVHPAK  +RF    ++ +FI Q++   + +      ++                     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQAATPVLNINEDGEEIEAPRWQPENRVAAG 360

Query: 337 ---LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
               ++   +   ++       P  A   T T E+LF +E+  + N   P          
Sbjct: 361 GNKYAQPEPAKAPREERTAAPEPASAVGRTATTERLFAREHAPAYNAGQPYQKQQGELYR 420

Query: 394 DPV-------------------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
             V                   E     +Y  G         Y + +   GL ++    A
Sbjct: 421 QLVQPVTEMTASAPKARQLPVEEPLHGDNYSFGRVLTVFPPCYALLEYKQGLALLALPVA 480

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
              L   ++        +  Q LL P  + L + E A    H + L  +GI+        
Sbjct: 481 ERGLKQAQLNPPTE--GLRPQPLLIPLKLTLNKDEAAACQRHQKLLALMGIEL-AVEHTT 537

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
             +R +   L ++N+ +L+ +++  +              + LAT
Sbjct: 538 ATLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALAT 576


>gi|218551440|ref|YP_002385232.1| DNA mismatch repair protein [Escherichia fergusonii ATCC 35469]
 gi|226723038|sp|B7LLV2|MUTL_ESCF3 RecName: Full=DNA mismatch repair protein mutL
 gi|218358982|emb|CAQ91642.1| methyl-directed mismatch repair protein [Escherichia fergusonii
           ATCC 35469]
          Length = 615

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTVDQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A    +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPTLAEIQYCYVNGRMMRDRLINHAIRQACENKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRTIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGGRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++      T 
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGETP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|82546589|ref|YP_410536.1| DNA mismatch repair protein [Shigella boydii Sb227]
 gi|123728278|sp|Q31TA0|MUTL_SHIBS RecName: Full=DNA mismatch repair protein mutL
 gi|81248000|gb|ABB68708.1| enzyme in methyl-directed mismatch repair [Shigella boydii Sb227]
          Length = 615

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E + I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFSHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|222035940|emb|CAP78685.1| DNA mismatch repair protein mutL [Escherichia coli LF82]
          Length = 615

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 275/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKGELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGSRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEVP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|167752896|ref|ZP_02425023.1| hypothetical protein ALIPUT_01158 [Alistipes putredinis DSM 17216]
 gi|167659965|gb|EDS04095.1| hypothetical protein ALIPUT_01158 [Alistipes putredinis DSM 17216]
          Length = 629

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/627 (27%), Positives = 280/627 (44%), Gaps = 46/627 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E + NQIAAGE++ RPS  +KE++EN++DA +  V+     GGK   QI D+G 
Sbjct: 4   RIKLLPEVVANQIAAGEVVNRPSSVVKEMMENAIDAGARSVKVNFRDGGKELIQIVDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  MA  RH TSKIS  DD   + TFGFRGEAL SI AVS + L +R  ++  G 
Sbjct: 64  GMSPIDARMAFDRHATSKISSLDDIYALKTFGFRGEALASIAAVSQVELRTRQAEDEVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              ++G +  S    A   G+   VR+LF+ +PAR  FL+     T  I    +R+A+  
Sbjct: 124 LTTVNGGEFVSQTLAACPVGSQFYVRNLFYNVPARRKFLEKSTTSTGQIKSEFQRVALCN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F         Y++       +   RI  V+G     N +E++  ++ + + G+ G 
Sbjct: 184 PQVGFELLMNDQPLYRLPA----ASLASRIVDVVGRHIKQNLLEVDADTSIVRVTGFVGR 239

Query: 240 PTFNRG-NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           P   +  N+++ Y+F+NGR  +  +    I  AY + IP    P   L L IDP ++DVN
Sbjct: 240 PAAAKKSNSSEQYLFVNGRYFRSPYFFKAILKAYEKLIPDACSPSYFLYLTIDPSRIDVN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----------SSVLSKKMISSFHQ 347
           VHP K+ ++F +   +   I  ++++ + K G                VL+K  +    +
Sbjct: 300 VHPQKTEVKFADEEAVWQIINAAVRETLAKTGAVPLMDFDQTDSVEIPVLTKGAVYREPK 359

Query: 348 DNAPKTHLPKYATSLTNTQEKLF--------------------------LQENRLSTNDL 381
             + +++ P  A   ++  E++                             E   S    
Sbjct: 360 AMSNESYNPFRADYASDVSERMPDVDFSGFDAPYDGEMPAGKGVGAEDRYDEMIPSAGFA 419

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
               +   S      +               +   Y  +      V+VD   A ER++++
Sbjct: 420 PTEMEFIPSAGEPVQQRLMDDPAACFSGVTVLGNGYASALYGGKWVVVDLRRARERVLYD 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
                  +    SQ LL PE +   E E AL+ E+  D   LG   E  G  A+ ++ +P
Sbjct: 480 NYLLLLTNGSSVSQQLLFPERLAFSENEYALLEENAVDFAALGFDLEFCGGGAVEVKGVP 539

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           A +    I +L+ +++ E         L  R E I A MAC G+    R + + E   LL
Sbjct: 540 ADIPHDTIDRLIYELLQEFAVPVDVQAL--RREKIAAVMACSGARSMSRTISTEEAESLL 597

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDI 588
            ++ +  N S    G+    K+ L +I
Sbjct: 598 GQLCEGGNVSFTPSGKAVMAKITLEEI 624


>gi|170021820|ref|YP_001726774.1| DNA mismatch repair protein [Escherichia coli ATCC 8739]
 gi|189030398|sp|B1IT36|MUTL_ECOLC RecName: Full=DNA mismatch repair protein mutL
 gi|169756748|gb|ACA79447.1| DNA mismatch repair protein MutL [Escherichia coli ATCC 8739]
 gi|269852787|gb|ACZ50723.1| MutL [Escherichia coli]
          Length = 615

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 276/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKIIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +  A +   P+Y  +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALSVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|259907176|ref|YP_002647532.1| DNA mismatch repair protein [Erwinia pyrifoliae Ep1/96]
 gi|224962798|emb|CAX54255.1| DNA mismatch repair protein [Erwinia pyrifoliae Ep1/96]
 gi|283476984|emb|CAY72876.1| DNA mismatch repair protein mutL [Erwinia pyrifoliae DSM 12163]
          Length = 608

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/545 (29%), Positives = 269/545 (49%), Gaps = 25/545 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MLIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  CGIDKDELAMALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTEAQSEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S +G    R+  + G  F+ +A+++  + +E++L G+ 
Sbjct: 181 ARFDVAISLSHNGKLVRQYRAVSDDGQRERRLGAICGTAFLTHALKIAWQHSELSLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  ++  +   Y ++NGR ++D+ I   IR AY + +     P  VL LEIDP QVDV
Sbjct: 241 ADPVGSKALSELQYCYVNGRMMRDRLINHAIRQAYQDKLGDRHQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +   + + G+ T   + + +       +N       
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVISVLQESGVETLPEIATVQPAEHRQPENRQAAGGN 360

Query: 357 KYATSLT-------------NTQEKLFLQENRLSTNDLLP-----SDDPTYSEDNDPVEE 398
            ++T                  QE L+ +        LL       + P  S   +    
Sbjct: 361 HFSTPAAAAPRPASPGGGSWQRQEPLYQKREGAVYQQLLQTPARSEEPPPASAAPNKEPP 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                +  G     + + Y + +  +GL ++    A   L   ++  +  S  +  Q LL
Sbjct: 421 LSGHTHSFGRVLTVVQERYALLEGKNGLALLALAVAARWLKQAQL--EPGSEGLKPQPLL 478

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  + L + E          L+++GI   +F  + + +R +P  L ++N+  L+ +++ 
Sbjct: 479 IPLRLKLDKAERDAGSRCSALLNQMGIDL-QFDAHHVMLRAVPLPLRQQNLQNLIPEMLG 537

Query: 519 EIIDS 523
            +   
Sbjct: 538 YLTRH 542


>gi|324112233|gb|EGC06211.1| DNA mismatch repair protein MutL [Escherichia fergusonii B253]
          Length = 615

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGVKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A    +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPTLAEIQYCYVNGRMMRDRLINHAIRQACENKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQARLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRTIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGGRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +  +  + +    ++++    A   L   ++      T 
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVQSDCALLERDGNILLLALPVAERWLRQAQL--TPGETP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|325499706|gb|EGC97565.1| DNA mismatch repair protein [Escherichia fergusonii ECD227]
          Length = 615

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/605 (26%), Positives = 277/605 (45%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A    +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPTLAEIQYCYVNGRMMRDRLINHAIRQACENKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRTIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             F +    +   P+Y+ +  +           +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYSPAPASGGRPAASWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +  +  + +    ++++    A   L   ++      T 
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVQSDCALLERDGNILLLALPVAERWLRQAQL--TPGETP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQYVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|300715038|ref|YP_003739841.1| DNA mismatch repair protein [Erwinia billingiae Eb661]
 gi|299060874|emb|CAX57981.1| DNA mismatch repair protein [Erwinia billingiae Eb661]
          Length = 627

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/615 (26%), Positives = 282/615 (45%), Gaps = 55/615 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIGKDELSMALARHATSKITTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTEAQAEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++   +P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDMAVTLKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F+ +       +    + +     R+  + G  F+++A+ +  +  +++L+G+ 
Sbjct: 181 ARFDVAFSLTHNGKLMRQYRGVADHSQRERRLGAICGTAFLSHALAIEWQHGDLSLKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++D+ I   IR AY + +     P  VL LEIDP QVDV
Sbjct: 241 ADPVGSRAITDLQYCYVNGRMMRDRLINHAIRQAYQDKLGDSHQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +   + + G  T   V        +  +N       
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVVSVLQEAGAETLPDVEPAAPAERWQPENRQAAGGN 360

Query: 357 KYATSLTN-------------------------------TQEKLFLQENRLSTNDLLPSD 385
            ++T   +                                QE ++  +   +   L+ + 
Sbjct: 361 HFSTPAPSKIPSGKSHTAGHSPAASTSGGGAGAGSSHWQRQEPIYQPQEGKAYQQLMRTP 420

Query: 386 DPTYSEDNDPVEESE------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
           D   + +     E              G   + I  N+ + +  + L +++   A     
Sbjct: 421 DVPVAREPSKQGERSTELPLSGHSQSFGRVLSVIRDNFALVEGQERLALINLPVAA--HW 478

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
            ++ + +     +  Q LL P  + + + E   I  H   L ++GI+  +   + + +R 
Sbjct: 479 LKQAQLEPGEEGLKPQPLLIPVRVKMDKPEREAITHHASLLIQMGIEL-QADSHHVTLRA 537

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P  L ++N+  L+ +++  +         Q  +   LA      S+         +   
Sbjct: 538 VPLPLRQQNLQNLIPELLGYLARQQDVSATQ--VAQWLA----RHSVVEHPHWNHSQAIT 591

Query: 560 LLREMEKNPNSSQCN 574
           LL E+E+      C 
Sbjct: 592 LLAEVERL-----CP 601


>gi|329666838|gb|AEB92786.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii DPC 6026]
          Length = 630

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 183/635 (28%), Positives = 292/635 (45%), Gaps = 53/635 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA S R+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSKRIRIDFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ + +    N  G 
Sbjct: 63  GIAKDQIDLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVRT-SNDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG +       A   GT + V DLFF  PARL +L+SE+ E   I D++ R+++ +
Sbjct: 122 RAIFSGSEKKLQEDAASPKGTKITVSDLFFNTPARLKYLRSERTEILKIVDIVNRLSLGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT +        +   +   +  + I+ + G         L  KS +  + G    
Sbjct: 182 PDVSFTLTNNGK---VLLKTNGRDDLRQDIANIYGRQLAEKMNILKGKSPDFEISGLISD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSNRNFISLLLNGRYIKNYRLTQAIMAGYGNKLRPRRYPIAVVKIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------------------SV 336
           HP K  +R      +   +  SI +A+ +     S                        V
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALEQNNQIDSGLNNLLAPKKSTNIDQLKFNLNKDV 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATS----------------LTNTQEKLFLQENRLSTND 380
           ++      F     P      + T+                +T+T +    Q+ +LS  D
Sbjct: 359 VNTARPVEFTPQVEPDQSAEVHETAANFVSLDQVRNDDKYVITSTWDDNVNQQVQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A +        Q  ++Y+I+   + L ++DQ  A+ RL +
Sbjct: 419 EEKDMQGKDDSIISSGDEILANNLPELTYMGQT-KSYLIAHHEEDLYLIDQVNAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++ QD NS  I+ Q LL+P I+D    +   + E+ E+L   G+  E FG N++ +R  
Sbjct: 478 DQILQDLNSENISQQGLLSPLILDFSNVDYLKLKENLENLQEFGLFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL--ATMACYGSIRSGRKMQSIEMN 558
           P  L + ++ + +R I+D  ++  T + +      I    TM    S R  R +  +E  
Sbjct: 538 PMWL-QPDVEKNVRMILDLYLNQ-TEHDISKLKAQIAGEITM--RQSARR-RMLNPVEAQ 592

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            LL+E+  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 593 ELLKELRNSSDPYQDFEGKIIIIQLSENDLNKMFK 627


>gi|15804759|ref|NP_290800.1| DNA mismatch repair protein [Escherichia coli O157:H7 EDL933]
 gi|15834400|ref|NP_313173.1| DNA mismatch repair protein [Escherichia coli O157:H7 str. Sakai]
 gi|217326011|ref|ZP_03442095.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           TW14588]
 gi|20455084|sp|Q8XDN4|MUTL_ECO57 RecName: Full=DNA mismatch repair protein mutL
 gi|12519155|gb|AAG59366.1|AE005650_5 enzyme in methyl-directed mismatch repair [Escherichia coli O157:H7
           str. EDL933]
 gi|13364623|dbj|BAB38569.1| enzyme in methyl-directed mismatch repair [Escherichia coli O157:H7
           str. Sakai]
 gi|209750300|gb|ACI73457.1| enzyme in methyl-directed mismatch repair [Escherichia coli]
 gi|217322232|gb|EEC30656.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           TW14588]
 gi|326346645|gb|EGD70379.1| DNA mismatch repair protein MutL [Escherichia coli O157:H7 str.
           1044]
          Length = 615

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---------- 346
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRPIPENRVAAGR 360

Query: 347 -------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+         +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMS------ENAQWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|303246676|ref|ZP_07332954.1| DNA mismatch repair protein MutL [Desulfovibrio fructosovorans JJ]
 gi|302492016|gb|EFL51894.1| DNA mismatch repair protein MutL [Desulfovibrio fructosovorans JJ]
          Length = 669

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 181/671 (26%), Positives = 288/671 (42%), Gaps = 90/671 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+E  I GGG++   + D+G+
Sbjct: 9   TIRVLPPELQNQIAAGEVVERPASVLKELVENSLDAGATRIEVSIDGGGRTAMVVADDGW 68

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT EE+ +AV RH TSKI   ++ ++I +FGFRGEALPSI +VS  TL SR    + GA
Sbjct: 69  GMTPEELSLAVTRHATSKIVSMEELTSIASFGFRGEALPSIASVSRFTLTSRHEAFDEGA 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +   +I    P A+  GT +EVRDLF  +PARL FLKSE VET   T+   R A+A 
Sbjct: 129 VIRVESGRIVEEGPAALARGTRIEVRDLFAAVPARLKFLKSEAVETKRATEAFSRAALAR 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+F  S       +      +     R+  +          E++     I +QG  G 
Sbjct: 189 LDVAFKLSVNGRTTLRFPA---SQTLAARLGGIWPPAVTEGLFEVDYALGPIRVQGLIGK 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +  A++   ++NGR VQD+ +LS +R AY   +    YP V L + + P  +DVNV
Sbjct: 246 PLSAQSRADRMLFYVNGRAVQDRLLLSAVREAYKGRLLSREYPQVALFVTLPPEDLDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-------------------------------- 327
           HPAK+ +RFR+  ++   + +++ +A++                                
Sbjct: 306 HPAKTEVRFRDEQVVFLNLRRAVGQALDKALVLRTVPAPEPWVKQSGGEPPKFATRRDFL 365

Query: 328 ---------KKGISTSSVLSKKMISSFHQDNAPKTHLPKYA------------------- 359
                    + G +T +    +     H         P  A                   
Sbjct: 366 DELVRADAPQPGQTTPATPIVREGPPVHPMGQEAQDAPAPAATPYQAVAENRRHGQPAPV 425

Query: 360 ----TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI-- 413
                      E+   Q     +     SD+ T   ++                  ++  
Sbjct: 426 RHLEPPAVVRHERQLAQAGEPESPPTGGSDEATSPAESRYAAPEAQPEILHARRPEELEP 485

Query: 414 ---HQNYIISQTTDGLVIVDQHA----AHERLIFEKMR---QDFNSTKITSQTLLTPEII 463
                   + Q  D  +IVD         +    E++     +   ++  S+ +  P  +
Sbjct: 486 SLPPGVRYLGQFADTYLIVDLGRELVLLDQHAAHERIIYAAMEATGSRGDSRPVGIPVEL 545

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
            L   E   + E   +L  +G   E   P  ++I   P  LS     + LR  +      
Sbjct: 546 TLHPAEQTRLQELHNELRAIGFALESPRPGTVSITGAPPGLSLGQAKEYLRAALA----- 600

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + TL     ++   M+C  +I++G ++   E   LL +  K P    C HGRP  ++ 
Sbjct: 601 GQSKTL----HDLWILMSCKTAIKAGTRLADDEAVALLAQWSKTPERDYCPHGRPVTVRF 656

Query: 584 KLSDIEKLFGR 594
              ++EK+F R
Sbjct: 657 GQREMEKMFKR 667


>gi|297517572|ref|ZP_06935958.1| DNA mismatch repair protein [Escherichia coli OP50]
          Length = 615

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 268/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRSIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP-----------SDDPTYSE 391
             F +  A +   P+Y  +  +         N                    +       
Sbjct: 361 NHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKLKA 420

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ + I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPERIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|194434572|ref|ZP_03066829.1| DNA mismatch repair protein MutL [Shigella dysenteriae 1012]
 gi|194417157|gb|EDX33269.1| DNA mismatch repair protein MutL [Shigella dysenteriae 1012]
 gi|320180683|gb|EFW55610.1| DNA mismatch repair protein MutL [Shigella boydii ATCC 9905]
 gi|332083768|gb|EGI88986.1| DNA mismatch repair protein mutL [Shigella dysenteriae 155-74]
          Length = 615

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 162/605 (26%), Positives = 272/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+EN LDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENCLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD------DPTYSEDNDPV 396
             F +  A +   P+Y+ +  +         N          +                V
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKV 420

Query: 397 EESE-----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            E +     A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|329297959|ref|ZP_08255295.1| DNA mismatch repair protein [Plautia stali symbiont]
          Length = 619

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/610 (26%), Positives = 267/610 (43%), Gaps = 51/610 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+E  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIEVDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS L L SR       
Sbjct: 61  CGIARDELAMALARHATSKIASLDDLEAIVSLGFRGEALASISSVSRLKLTSRTADQQEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++   +P A   GT +EV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTSLEVLDLFYNTPARRKFMRTEKTEFTHINEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + +       +    +       R+  + G  F+ +A+ ++ + +++ L+G+ 
Sbjct: 181 ARFDVAISLTHNGKLVRQYRGVTQEAQRERRLGAICGTPFMQHALRIDWQHDDLALRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++DK I   IR AY   +   + P  VL LEIDP QVDV
Sbjct: 241 ADPAGSRQVTDLQYCYVNGRMMRDKLINHAIRQAYQTQLGEDQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------- 349
           NVHPAK  +RF    ++ +FI Q +   +     +   +   +      Q          
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIWQGVMSVLQASRSAELPLAHAEEPPPQWQPENRQAAGAN 360

Query: 350 ----------------------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                                   +   P Y        ++L       +         P
Sbjct: 361 HFAQPATGARSGGSAASGGTGGQWQPKEPGYRAREGAVYQQLIKTPAAETPRAAATEPAP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                        A     G   + + + Y + +  + L ++    A   L   +++   
Sbjct: 421 APRPAPAREAPLAAHTQSFGRVLSVVRERYALLECGETLQLLSLSVAARWLKQAQLQP-- 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               +  Q LL P  + +   E ++I      L ++GI  +R G + + +R +P  L  +
Sbjct: 479 GEEGLKPQPLLIPVRLKIAHEELSVIDAQAALLSQMGIDLQRKGQH-VTLRAVPLPLRTQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATM--ACYGSIRSGRKMQSIEMNRLLREME 565
           N+  L+ D++  +            +   LA    A      +       +   LL E+E
Sbjct: 538 NLQILIPDLLGYLARQQEVSA--SALAQWLARRDDA------AEPHWNHSQAITLLAELE 589

Query: 566 KNPNSSQCNH 575
           +      C H
Sbjct: 590 RL-----CPH 594


>gi|331681189|ref|ZP_08381826.1| DNA mismatch repair protein MutL [Escherichia coli H299]
 gi|331081410|gb|EGI52571.1| DNA mismatch repair protein MutL [Escherichia coli H299]
          Length = 615

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 269/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRIAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|108761749|ref|YP_632205.1| DNA mismatch repair protein MutL [Myxococcus xanthus DK 1622]
 gi|123374404|sp|Q1D568|MUTL_MYXXD RecName: Full=DNA mismatch repair protein mutL
 gi|108465629|gb|ABF90814.1| DNA mismatch repair protein MutL [Myxococcus xanthus DK 1622]
          Length = 619

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/620 (26%), Positives = 278/620 (44%), Gaps = 35/620 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS+ +IN+IAAGE++ERP+  +KEL+EN++DA +  V   + GGG     ++D+G 
Sbjct: 3   RIARLSDVLINKIAAGEVVERPASVVKELVENAIDAGAGTVRVELDGGGVDRIIVSDDGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +    ++RH TSK+   DD  +I + GFRGEA+P+I +VS  TL S    +  G 
Sbjct: 63  GMGRSDAVACLERHATSKLRELDDLFHIDSMGFRGEAIPAIASVSRFTLHSAAANSEVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++++ G     V       GT++ V DLFF +PAR  FL+    E     + + R+A+AY
Sbjct: 123 RVSVEGGGPPLVEDAPPRTGTVMTVEDLFFNVPARRKFLRRGDTELKHAEEAVVRLALAY 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F  S      +         +  ERI+  +G     +   + E+   + + G+   
Sbjct: 183 PEVGFFASHEGGTLFSSAACP--DDPRERIAAALGSTSHPHLFPVEERRLGVAVTGFAAS 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F   NA   Y F+N R ++D+ ++ TI+ AY + +  GR PVVVL +++DPR VDVNV
Sbjct: 241 PEFTFNNARGLYTFVNRRYIRDRGLIGTIQRAYQDFLAAGRQPVVVLHIDVDPRAVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF +   ++  +  ++ + +       S V      +    D A   H  +  
Sbjct: 301 HPQKQEVRFADARGVQEALTAALSRMLRAAPWLGSGVEGAAPQAGQPMDAAHYAHAVERF 360

Query: 360 TSLTNTQEKLF--------------------------LQENRLSTNDLLPSDDPTYSEDN 393
             LT  QE  +                           +   L     +           
Sbjct: 361 --LTRAQEAAWGGPLPTAMDAPGPGPGAPSLGPLGQGARPGALPFAAAVGQAPAFGQAQP 418

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKI 452
              E     ++        +   + + +   G LV++D HAA ER       +   S K 
Sbjct: 419 QLNEAPPPGYFGALRPLGMLGGRFHVCEGPGGTLVVMDPHAALERARLTGYLRALESGKP 478

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
                L    ++L       ++E  E L RLG   E FG   +A++ +P  L   +   L
Sbjct: 479 PPAPTLFGTTLELPVAAAKALVEGREALSRLGFDVEPFGGTTVALKTVPPGLEGADARSL 538

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR-KMQSIEMNRLLREMEKNPNSS 571
           L  +   +   S T       E +   MAC+ + ++G   +   +   LL E+++     
Sbjct: 539 LEALARALPPKSATLDTVSLAEAVRV-MACHAAKQAGAVPLSDAQFRALLGELDRADFHP 597

Query: 572 QCNHGRPTFIKLKLSDIEKL 591
            C+HG    +++ L ++E+ 
Sbjct: 598 TCSHGTVVVLEMPLLELERR 617


>gi|227888713|ref|ZP_04006518.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii ATCC
           33200]
 gi|227850740|gb|EEJ60826.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii ATCC
           33200]
          Length = 630

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/635 (29%), Positives = 292/635 (45%), Gaps = 53/635 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA S R+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSKRIRIDFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ + +    N  G 
Sbjct: 63  GIAKDQIDLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVTTN-NDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG +       A   GT + V DLFF  PARL +L+SE+ E   I D++ R+A+ +
Sbjct: 122 RAIFSGSEKKLQEDAASPKGTKITVSDLFFNTPARLKYLRSERTEILKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT +       K N      +  + I+ + G         L  KS +  + G    
Sbjct: 182 PDVSFTLTNNGKILLKTN---GRDDLRQDIANIYGRQLAEKMDILKGKSPDFEISGLISD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSNRNFISLLLNGRYIKNYRLTQAIMAGYGNKLRPRRYPIAVVKIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------------------SV 336
           HP K  +R      +   +  SI +A+ +     S                        V
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALEQNNQIDSGLNNLLAPKKSTNIDQLKFNLNKDV 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATS----------------LTNTQEKLFLQENRLSTND 380
           ++      F     P      + T+                +T+T +    Q+ +LS  D
Sbjct: 359 VNTARPVEFTPRVEPDQSAEVHETAADFVSLDQVRNDDKYVITSTWDDNVDQQIQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A +        Q  ++Y+I+   + L ++DQ  A+ RL +
Sbjct: 419 EEKDIQGKDDSIILSGDEILANNLPELTYMGQT-KSYLIAHHEEDLYLIDQVNAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++ QD NS  I+ Q LL+P I+D    +   + E+ E+L   G+  E FG N++ +R  
Sbjct: 478 DQILQDLNSENISQQGLLSPLILDFSNVDYLKLKENLENLQEFGLFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL--ATMACYGSIRSGRKMQSIEMN 558
           P  L + ++ + +R I+D  ++  T + +      I    TM    S R  R +  +E  
Sbjct: 538 PMWL-QPDVEKNVRMILDLYLNQ-TEHDISKLKAQIAGEITM--RQSARR-RMLNPVEAQ 592

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            LL+E+  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 593 ELLKELRNSSDPYQDFEGKIIIIQLSKNDLNKMFK 627


>gi|268318973|ref|YP_003292629.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii FI9785]
 gi|262397348|emb|CAX66362.1| DNA mismatch repair protein MutL [Lactobacillus johnsonii FI9785]
          Length = 630

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 180/633 (28%), Positives = 290/633 (45%), Gaps = 49/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA S R+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSKRIRIDFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ + +    N  G 
Sbjct: 63  GIAKDQIDLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVTT-SNDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   SG +       A   GT + V DLFF  PARL +L+SE+ E   I D++ R+A+ +
Sbjct: 122 RAIFSGSEKKLQEDAASPKGTKITVSDLFFNTPARLKYLRSERTEILKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT +        +   +   +  + I+ + G         L  KS +  + G    
Sbjct: 182 PDVSFTLTNNGK---VLLKTNGRDDLRQDIANIYGRQLAEKMDILKGKSPDFKISGLISD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSNRNFISLLLNGRYIKNYRLTQAIMAGYGNKLRPRRYPIAVVKIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  +R      +   +  SI +A+ +     S                         
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALEQNNQIDSGLNNLLAPKESTNIDQLKFNLNKDV 358

Query: 335 ----------SVLSKKMISSFHQDNAPKTHLPKYATS----LTNTQEKLFLQENRLSTND 380
                       +     +  H+  A    L +        +T+T +    Q+ +LS  D
Sbjct: 359 VNTARPVEFIPRVEPDQSAEVHETAANFVSLDQVRNDDKYVITSTWDDNVDQQIQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A +        Q  ++Y+I+   + L ++DQ  A+ RL +
Sbjct: 419 EEKDIQGKDDSIIPSGDEILANNLPELTYMGQT-KSYLIAHHEEDLYLIDQVNAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++ +D NS  I+ Q LL+P I+D    +   + E+ E+L   G+  E FG N++ +R  
Sbjct: 478 DQILKDLNSKNISQQGLLSPLILDFSNVDYLKLKENLENLQEFGLFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P  L + ++ + +R I+D  ++  T + +      I   +    S R  R +  +E   L
Sbjct: 538 PMWL-QPDVEKNIRMILDLYLNQ-TEHDISKLKAQIAGEITVRQSSRR-RMLNPVEAQEL 594

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+E+  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 595 LKELRNSSDPYQDFEGKIIIIQLSENDLNKMFK 627


>gi|238787537|ref|ZP_04631335.1| DNA mismatch repair protein mutL [Yersinia frederiksenii ATCC
           33641]
 gi|238724324|gb|EEQ15966.1| DNA mismatch repair protein mutL [Yersinia frederiksenii ATCC
           33641]
          Length = 642

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 160/632 (25%), Positives = 279/632 (44%), Gaps = 74/632 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  Q N  
Sbjct: 61  CGISKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLMLTSRTAQQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ VEV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTVEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S                    R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRHYRAAPDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-----------------KGISTSSVLSKK 340
           NVHPAK  +RF    ++ +FI Q++   + +                       + ++  
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQAATPVLNINEDGEEIEAPRWQPENRVAAG 360

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
           +      ++       +  +S T   E+    E  ++T      +         P ++ +
Sbjct: 361 VNKYAQPESTIAQPAERPPSSPTRPAERAASAEQSITTGRSSAREHIPAYHPGQPYQKQQ 420

Query: 401 ------------------------------------ATHYQLGIACAQIHQNYIISQTTD 424
                                                  Y  G         Y + +   
Sbjct: 421 GELYRQLVQPAAENKPVDTLTLAPVIRQIPAEEPLNGDSYSFGRVLTVFPPCYALIEYKQ 480

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL ++    A   L   ++     +  +  Q LL P  + L + E A    H + L  +G
Sbjct: 481 GLALLALTVAERWLKQAQLNPP--AEGLRPQPLLIPLKLTLDKNEAAACQRHQKLLATMG 538

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY 543
           I+       A  +R +   L ++N+ +L+ +++  +              + LAT ++ +
Sbjct: 539 IELAVEHARA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWISRH 591

Query: 544 -GSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            GS          +  +LL ++E+      C 
Sbjct: 592 LGS--EHEVWNVSQAIQLLTDVERL-----CP 616


>gi|320539679|ref|ZP_08039343.1| putative methyl-directed mismatch repair protein [Serratia
           symbiotica str. Tucson]
 gi|320030291|gb|EFW12306.1| putative methyl-directed mismatch repair protein [Serratia
           symbiotica str. Tucson]
          Length = 620

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/608 (26%), Positives = 276/608 (45%), Gaps = 48/608 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATCIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS L+L SR  + +  
Sbjct: 61  CGIGKDDLALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLSLTSRTAEQSEA 120

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q  + G  +  +V+P A   G+ + V DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYVEGCDQTVTVKPAAHPVGSTLAVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R+S + G  F+ +A+ L+ +  E+++ G+ 
Sbjct: 181 ARFDVAINLSHNGKLIRQYRAAKEKNQHERRLSSICGLAFLQHALNLSWQHGELSICGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++N R ++D+ I   IR AY + +   + P  VL LE+DP QVDV
Sbjct: 241 ADPAGARQLGEIQYCYVNSRMMRDRLINHAIRQAYQDQLKDNQQPAYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK----------------------------K 329
           NVHPAK  +RF    ++ +FI Q++ + + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTRVLQQAGSALLAEEPAEKETPTWQPENRIAAGGN 360

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKY--ATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             S  +   +K  SS       +   P Y   +     + +L+ +  + +      S  P
Sbjct: 361 HFSQPTPCCEKTPSSPPASAHGRAPQPAYHSGSGYQKREGELYGKLLQAAKPQDEMSKQP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +       E   A++         IH              +      ER    + + + 
Sbjct: 421 LFPPVKSAQEALPASNSHSFGRVMMIHPPCYALIDWQHQPALLNLLVAERW-LRQTQLNP 479

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               + SQ LL P  + L + E   I+ H   L ++G+   +     + +R +P  L ++
Sbjct: 480 PEEGLRSQPLLVPIKLVLSKNEATAIVRHQALLVKMGLDL-QADHGHVMLRAVPLPLRQQ 538

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY-GSIRSGRKMQSIEMNRLLREMEK 566
           N+ +L+ +++  +               +   +A   GS    ++  S +  +LL ++E+
Sbjct: 539 NLQKLIPELLGYLAGHQEMSPTM-----LAIWLAQRLGS--EHQQWNSSQAIQLLTDVER 591

Query: 567 NPNSSQCN 574
                 C 
Sbjct: 592 L-----CP 594


>gi|218707781|ref|YP_002415300.1| DNA mismatch repair protein [Escherichia coli UMN026]
 gi|293402797|ref|ZP_06646894.1| DNA mismatch repair protein mutL [Escherichia coli FVEC1412]
 gi|298378327|ref|ZP_06988211.1| DNA mismatch repair protein mutL [Escherichia coli FVEC1302]
 gi|300899708|ref|ZP_07117934.1| DNA mismatch repair protein [Escherichia coli MS 198-1]
 gi|226723036|sp|B7NGA4|MUTL_ECOLU RecName: Full=DNA mismatch repair protein mutL
 gi|218434878|emb|CAR15816.1| methyl-directed mismatch repair protein [Escherichia coli UMN026]
 gi|291429712|gb|EFF02726.1| DNA mismatch repair protein mutL [Escherichia coli FVEC1412]
 gi|298280661|gb|EFI22162.1| DNA mismatch repair protein mutL [Escherichia coli FVEC1302]
 gi|300356719|gb|EFJ72589.1| DNA mismatch repair protein [Escherichia coli MS 198-1]
          Length = 615

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 268/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRIAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +      +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDDPQPAPRAIPENRVAAGR 360

Query: 344 ----------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                            P         +     +  + ++       LL +  P      
Sbjct: 361 NHFAEPAVREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKA 420

Query: 394 DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
              +E    A     G     +H +  + +    + ++    A   L   ++        
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERGGNISLLALPVAERWLRQAQL--TPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|162146417|ref|YP_001600876.1| DNA mismatch repair protein mutL [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161784992|emb|CAP54535.1| putative DNA mismatch repair protein mutL [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 623

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 189/595 (31%), Positives = 302/595 (50%), Gaps = 47/595 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LSE+++N+IAAGE+IERP+ A+KEL+EN++D+ + R+  ++  GG    ++ D+G G
Sbjct: 13  IRRLSEQVVNRIAAGEVIERPAAALKELVENAIDSGARRIAVLLERGGIERIEVVDDGCG 72

Query: 63  MTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           MT +++ +AV+RHCTSK+ D+    I T GFRGEALPSIGA + LT+ SRP   ++  ++
Sbjct: 73  MTPDDLLLAVERHCTSKLRDETLVRIETLGFRGEALPSIGAAARLTVTSRPHGADSAWRV 132

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           ++ G  + +  P A  PGT V V DLFF  PAR  FLKS +VE       +RR+A++ P 
Sbjct: 133 SVEGGLVGAPAPCAGPPGTRVTVEDLFFATPARRKFLKSPRVEAGHADITVRRLALSVPD 192

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           V+F         + +       +   R++ ++  +  +  + +  +  ++ L G+   P+
Sbjct: 193 VAFRLQLDDRVVFDLPA----QDLESRVAAILESEGADGMLPVEGRRGDLVLDGFACGPS 248

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            +R  A+   + +NGR V D  + + +R AY   I  GR+ VV L L I P  VDVNVHP
Sbjct: 249 VHRATASGQILLVNGRPVVDPVLRTAVRVAYRHVIEHGRHAVVALSLTIPPDLVDVNVHP 308

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY--- 358
           AK+ +RF +P  +R  +I ++ +A+            +  +       A +   P     
Sbjct: 309 AKTELRFADPAAVRGLVIGALGRALGSGAGVA---GVRPGLLQSRPATASRIWYPSADAP 365

Query: 359 -------------------ATSLTNTQEKLFLQENRL-----------STNDLLPSDDPT 388
                                SL  T+  L     R+           +           
Sbjct: 366 SAGLAPAAAPAPAIFSAPGRDSLAGTRLDLGAPAARVLDDPPAAPPPDAGAAGGAGAGGP 425

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDF 447
            +   D    ++A  Y LG + AQ+   YI++ + DG LV+VDQHAAHERL  E++R  +
Sbjct: 426 DAAPPDAAILADAADYPLGASVAQVMGTYIVAVSGDGSLVLVDQHAAHERLTHERLRARY 485

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               + ++ LL P+                    R G K E FG  A+ +R +PA+L   
Sbjct: 486 LDGTLRAKRLLLPKSYPAARYRPTCCCPSPARWRRWGWKLEPFGGGAVLVRALPALLGTD 545

Query: 508 NIPQLLRDIIDEIIDS-----STTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           +   LLRD+ DE+ +        T  L  R++ ++A MAC+GS+R+GR +   EM
Sbjct: 546 DPAGLLRDMADELAEDDLADPGDTGALDGRLDAVIARMACHGSVRAGRSLTRAEM 600


>gi|314936542|ref|ZP_07843889.1| DNA mismatch repair protein HexB [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655161|gb|EFS18906.1| DNA mismatch repair protein HexB [Staphylococcus hominis subsp.
           hominis C80]
          Length = 674

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 163/674 (24%), Positives = 293/674 (43%), Gaps = 85/674 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ER S  +KEL+EN++DA+++ +   +   G S  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERSSSVVKELLENAIDAKATEINIEVEQSGISSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSKI+  DD  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEQDDLQLVFHRHATSKINDDDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I S +P     GT ++V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGEILSQKPAKAKKGTDIKVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F+  +      K N    +G   E ++++ G     + V ++  +++  L+G+   
Sbjct: 182 PNIRFSLISDGKTMLKTN---GSGRTNEVMAEIYGIKVAKDLVHISGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFALNKAITEGYHTLLTIGRYPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQD----NA 350
           HP K  +R      + N II+ I+ A   + +   + L +     K++ +F Q       
Sbjct: 299 HPTKLEVRLSKEEQLYNLIIEKIRHAFKDRILIPKNDLDRTPKKNKVLHTFEQQKIDFEQ 358

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY--SEDNDPVEESEATHYQLGI 408
            + ++      L N  +      N  ST      ++ T   S   +  E S   + +  +
Sbjct: 359 KQQNISNKIKQLENKNDPNVSTNNTFSTISSQYDEEHTSDDSYTREDNEHSSVYNNKRSM 418

Query: 409 ACAQIHQNYIISQTTDGLV-IVDQHAAHERLIF-----EKMRQDFNSTK----------- 451
                     I  + D     +D     E  I+     E  +++  + K           
Sbjct: 419 DKDYFDIQKDILNSLDRAESSIDNTRHDETNIYNYDENEDFQENVTNQKEQDIKGKVSST 478

Query: 452 -------ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--ERFGPNAIAIRE--I 500
                  +     +    I         +++      R+  +   E+ G  +  +++  I
Sbjct: 479 PSRRVPYMEVVGQVHGTYIIAQNENGMFMIDQHAAQERIKYEYFREKIGEVSNEVQDLLI 538

Query: 501 PAILSKKNIPQLLRD-------------------------------------IIDEIID- 522
           P         QL+ D                                     II ++I+ 
Sbjct: 539 PLTFHFSKDEQLIIDQYREELDKVGVHLEHFGGYDYIVNSYPVWFPKVEAEEIIKDMIEL 598

Query: 523 --SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
             +     ++   E+    M+C  SI++   ++  EM  L+ ++ +  +   C HGRP  
Sbjct: 599 VLNHKKIDVKKMREDAAIMMSCKKSIKANHYLKKNEMADLIDQLREAEDPFTCPHGRPII 658

Query: 581 IKLKLSDIEKLFGR 594
           I     ++EKLF R
Sbjct: 659 INFSNYELEKLFKR 672


>gi|292489622|ref|YP_003532512.1| DNA mismatch repair protein mutL [Erwinia amylovora CFBP1430]
 gi|292898158|ref|YP_003537527.1| DNA mismatch repair protein [Erwinia amylovora ATCC 49946]
 gi|291198006|emb|CBJ45108.1| DNA mismatch repair protein [Erwinia amylovora ATCC 49946]
 gi|291555059|emb|CBA23145.1| DNA mismatch repair protein mutL [Erwinia amylovora CFBP1430]
          Length = 613

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 168/601 (27%), Positives = 282/601 (46%), Gaps = 41/601 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGARLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  CGIDKGELAMALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTEAQSEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S +G    R+  + G  F+ +A+++  + +E+ L G+ 
Sbjct: 181 ARFDVAISLSHNGKLVRQYRAVSDDGQRERRLGAICGTAFLTHALKIAWQHSELNLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  ++  +   Y ++NGR ++D+ I   IR AY + +     P  VL LEIDP QVDV
Sbjct: 241 ADPVGSKTLSELQYCYVNGRMMRDRLINHAIRQAYQDKLGDRHQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +   + + G  T   + + +    +  +N       
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQGVVSVLQESGAETLPEIATVQPAERWQPENRQAAGGN 360

Query: 357 KYATSLT----------------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            ++T  T                  QE ++ +        LL +   +      P   ++
Sbjct: 361 HFSTPATAPAAAPRPALTGGGSWQRQEPVYQKREGAVYQQLLQTPARSEEPQTAPASATQ 420

Query: 401 A-------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                     +  G     + Q Y + +  + L ++    A   L   ++  +  S  + 
Sbjct: 421 NKEPPLSGHTHSFGRVLTVVQQQYALLEAKNSLALLALAVAARWLKQAQL--EPGSEGLK 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P  + L + E       +  L+++GI    F  + + +R +P  L ++N+  L+
Sbjct: 479 PQPLLIPLRLKLEKAERDAGSRCNALLNQMGIDL-LFDAHHVMLRAVPLPLRQQNLQNLI 537

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            +++  +         Q  +   LA      S    +     +   LL E+E+      C
Sbjct: 538 PEMLGYLARHQEVTAYQ--LAQWLA----RQSASEHQHWNHSQAITLLAEVERL-----C 586

Query: 574 N 574
            
Sbjct: 587 P 587


>gi|229496657|ref|ZP_04390371.1| DNA mismatch repair protein MutL [Porphyromonas endodontalis ATCC
           35406]
 gi|229316554|gb|EEN82473.1| DNA mismatch repair protein MutL [Porphyromonas endodontalis ATCC
           35406]
          Length = 641

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/643 (24%), Positives = 298/643 (46%), Gaps = 60/643 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+ENSLDA + R+   +   GK+  ++TD+G G
Sbjct: 5   IHVLPDSIANQIAAGEVIQRPASILKELVENSLDAGAKRIIVEVEEAGKASLKVTDDGCG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKISD  D  ++ + GFRGEAL SI +V+ + L +R  ++    Q
Sbjct: 65  MSQMDARMAFERHATSKISDVQDLFSLRSMGFRGEALASIASVAQVELTTRRAEDEMATQ 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++G  + SVR VA   G+   VR++FF +PAR  FLKS Q E   + +   R+ + YP
Sbjct: 125 LTLNGSDVVSVRNVAAPVGSSFMVRNVFFNVPARRRFLKSNQTELKHLIEQFERIVLVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VSF+F +  +    +   +       RI+  +G+      + ++ ++    + G+  +P
Sbjct: 185 GVSFSFYSDGNLTLNLPATT----QRRRITDTLGQSVDKGLIPIHFENEISNINGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            + +    + Y+F+NGR ++  +    I + Y + +  G  P   L   IDP ++DVN+H
Sbjct: 241 DYAKKRGAEQYLFVNGRYMRHPYFHRAILSVYEKLLSPGYAPNYFLFFSIDPSRIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI------------------ 342
           P K+ I+F +   I   +  +I+++++      +     K +                  
Sbjct: 301 PTKTEIKFLDEQAIFKLLAIAIRQSLSTTMAVPTIDFEHKNVVDIPIYSGKQKEVLPSPD 360

Query: 343 -------SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                  + F+  + P T       S  + + K+  +    S      +   T+S+    
Sbjct: 361 QPLDPDYNPFNSTDLPITQSSAKGYSAPSRRPKVDWKSMFESFEQHKENRATTFSQKEAA 420

Query: 396 VEESEAT-----------------------HYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
               E+                               C      YI+S  + G+V++D  
Sbjct: 421 PISPESCLVSEKNPPQNQLFSTQENFSSQAVSLEKTPCFLHDNKYIVSSVSRGVVLIDYK 480

Query: 433 AAHERLIFEKMRQDF--NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            A +R+I+E+++++F     +  ++ LL PE+      + AL+     +L  +G +    
Sbjct: 481 RAQQRIIYEEVKREFAKEGKEHATRKLLFPELCSFPTKDVALVDSLLPELESIGFEISSL 540

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC-YGSIRSG 549
           G  + +I  +P ++ + +  +L+  II   ++ S + T +  +E +   ++   G+I S 
Sbjct: 541 GGGSYSILAVPEMV-ETDAKELVEQIISNALEQSIS-TKEALVEILALKLSNYRGAI-SN 597

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
             +    +  L+ ++     S+    G+     L  ++I++ F
Sbjct: 598 LPVSPEGIEALIAKLFSCQESTYTPQGKLIMRVLSNNEIQQSF 640


>gi|162418239|ref|YP_001605281.1| DNA mismatch repair protein [Yersinia pestis Angola]
 gi|238687244|sp|A9QYN3|MUTL_YERPG RecName: Full=DNA mismatch repair protein mutL
 gi|162351054|gb|ABX85002.1| DNA mismatch repair protein MutL [Yersinia pestis Angola]
          Length = 635

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/625 (25%), Positives = 277/625 (44%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + +  
Sbjct: 61  CGISKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +            R++ + G  F+ +A+ +  +  ++ + G+ 
Sbjct: 181 ARFDVAINLNHNGKLIRQYRAAPDPAQHERRLASICGPAFLQHALAIAWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASHTLSEMQYCYVNNRMMRDRLINHAIRQAYQDRLNDAQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------A 350
           NVHPAK  +RF    ++ +FI Q++   + +      ++  +  + +             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTAVLQQTNAPILNISEEGEVDAPRWQQENRVAAGT 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------- 393
            K   P+ A S    Q     + +      L   +D  Y +                   
Sbjct: 361 NKYAQPEAAKSSAAEQAVARERSSARERAALAYKEDHPYQKQQGELYRQLLQPSAAAKPA 420

Query: 394 ----------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                                    E     +Y  G         Y + +   G+ ++  
Sbjct: 421 TSPAAIPASSVSSPSIPVQRITQAEEPLHGDNYSFGRVLTVFPPCYALIEYQGGVALLSL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
            A  ER   ++ +       +  Q LL P  I L + E A    H++ L  +GI+     
Sbjct: 481 -AVAERW-LKQAQLSPPEEGLRPQPLLIPLKITLDKNEIAACQNHEKLLITMGIELSVEQ 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT +A + GS    
Sbjct: 539 GRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DTLATWLARHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL E+E+      C 
Sbjct: 590 EVWNVSQAIQLLTEVERL-----CP 609


>gi|22124542|ref|NP_667965.1| DNA mismatch repair protein [Yersinia pestis KIM 10]
 gi|45440381|ref|NP_991920.1| DNA mismatch repair protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51594775|ref|YP_068966.1| DNA mismatch repair protein [Yersinia pseudotuberculosis IP 32953]
 gi|108809903|ref|YP_653819.1| DNA mismatch repair protein [Yersinia pestis Antiqua]
 gi|108813460|ref|YP_649227.1| DNA mismatch repair protein [Yersinia pestis Nepal516]
 gi|145600850|ref|YP_001164926.1| DNA mismatch repair protein [Yersinia pestis Pestoides F]
 gi|150260585|ref|ZP_01917313.1| DNA mismatch repair protein [Yersinia pestis CA88-4125]
 gi|165926767|ref|ZP_02222599.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936468|ref|ZP_02225036.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011848|ref|ZP_02232746.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213990|ref|ZP_02240025.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400705|ref|ZP_02306214.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418954|ref|ZP_02310707.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423238|ref|ZP_02314991.1| DNA mismatch repair protein MutL [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470469|ref|ZP_02335173.1| DNA mismatch repair protein MutL [Yersinia pestis FV-1]
 gi|170026016|ref|YP_001722521.1| DNA mismatch repair protein [Yersinia pseudotuberculosis YPIII]
 gi|186893782|ref|YP_001870894.1| DNA mismatch repair protein [Yersinia pseudotuberculosis PB1/+]
 gi|218927574|ref|YP_002345449.1| DNA mismatch repair protein [Yersinia pestis CO92]
 gi|229836631|ref|ZP_04456797.1| methyl-directed mismatch repair protein [Yersinia pestis Pestoides
           A]
 gi|229840243|ref|ZP_04460402.1| methyl-directed mismatch repair protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842321|ref|ZP_04462476.1| methyl-directed mismatch repair protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903940|ref|ZP_04519053.1| methyl-directed mismatch repair protein [Yersinia pestis Nepal516]
 gi|270489072|ref|ZP_06206146.1| DNA mismatch repair protein, C-terminal domain protein [Yersinia
           pestis KIM D27]
 gi|294502480|ref|YP_003566542.1| DNA mismatch repair protein [Yersinia pestis Z176003]
 gi|20455102|sp|Q8ZIW4|MUTL_YERPE RecName: Full=DNA mismatch repair protein mutL
 gi|81825958|sp|Q66FB7|MUTL_YERPS RecName: Full=DNA mismatch repair protein mutL
 gi|123073158|sp|Q1CEF3|MUTL_YERPN RecName: Full=DNA mismatch repair protein mutL
 gi|123245400|sp|Q1C0Z8|MUTL_YERPA RecName: Full=DNA mismatch repair protein mutL
 gi|166232114|sp|A4TRP1|MUTL_YERPP RecName: Full=DNA mismatch repair protein mutL
 gi|238688465|sp|B1JMP1|MUTL_YERPY RecName: Full=DNA mismatch repair protein mutL
 gi|238691358|sp|B2K202|MUTL_YERPB RecName: Full=DNA mismatch repair protein mutL
 gi|21957340|gb|AAM84216.1|AE013665_5 DNA mismatch repair protein [Yersinia pestis KIM 10]
 gi|45435237|gb|AAS60797.1| DNA mismatch repair protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588057|emb|CAH19663.1| DNA mismatch repair protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777108|gb|ABG19627.1| DNA mismatch repair protein MutL [Yersinia pestis Nepal516]
 gi|108781816|gb|ABG15874.1| DNA mismatch repair protein MutL [Yersinia pestis Antiqua]
 gi|115346185|emb|CAL19053.1| DNA mismatch repair protein [Yersinia pestis CO92]
 gi|145212546|gb|ABP41953.1| DNA mismatch repair protein MutL [Yersinia pestis Pestoides F]
 gi|149289993|gb|EDM40070.1| DNA mismatch repair protein [Yersinia pestis CA88-4125]
 gi|165915584|gb|EDR34193.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921390|gb|EDR38614.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989207|gb|EDR41508.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166204785|gb|EDR49265.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962948|gb|EDR58969.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167050073|gb|EDR61481.1| DNA mismatch repair protein MutL [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057408|gb|EDR67154.1| DNA mismatch repair protein MutL [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752550|gb|ACA70068.1| DNA mismatch repair protein MutL [Yersinia pseudotuberculosis
           YPIII]
 gi|186696808|gb|ACC87437.1| DNA mismatch repair protein MutL [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679710|gb|EEO75813.1| methyl-directed mismatch repair protein [Yersinia pestis Nepal516]
 gi|229690631|gb|EEO82685.1| methyl-directed mismatch repair protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696609|gb|EEO86656.1| methyl-directed mismatch repair protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706315|gb|EEO92323.1| methyl-directed mismatch repair protein [Yersinia pestis Pestoides
           A]
 gi|262360510|gb|ACY57231.1| DNA mismatch repair protein [Yersinia pestis D106004]
 gi|270337576|gb|EFA48353.1| DNA mismatch repair protein, C-terminal domain protein [Yersinia
           pestis KIM D27]
 gi|294352939|gb|ADE63280.1| DNA mismatch repair protein [Yersinia pestis Z176003]
          Length = 635

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/625 (25%), Positives = 276/625 (44%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + +  
Sbjct: 61  CGISKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +            R++ + G  F+ +A+ +  +  ++ + G+ 
Sbjct: 181 ARFDVAINLNHNGKLIRQYRAAPDPAQHERRLASICGPAFLQHALAIAWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASHTLSEMQYCYVNNRMMRDRLINHAIRQAYQDRLNDAQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------A 350
           NVHPAK  +RF    ++ +FI Q++   + +      ++  +  + +             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTAVLQQTNAPILNISEEGEVDAPRWQQENRVAAGT 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------- 393
            K   P+ A S    Q     + +          +D  Y +                   
Sbjct: 361 NKYAQPEAAKSSAAEQAVARERSSARERAAPAYKEDHPYQKQQGELYRQLLQPSAAAKPA 420

Query: 394 ----------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                                    E     +Y  G         Y + +   G+ ++  
Sbjct: 421 TSPAAIPASSVSSPSIPVQRITQAEEPLHGDNYSFGRVLTVFPPCYALIEYQGGVALLSL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
            A  ER   ++ +       +  Q LL P  I L + E A    H++ L  +GI+     
Sbjct: 481 -AVAERW-LKQAQLSPPEEGLRPQPLLIPLKITLDKNEIAACQNHEKLLITMGIELSVEQ 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT +A + GS    
Sbjct: 539 GRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DTLATWLARHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL E+E+      C 
Sbjct: 590 EVWNVSQAIQLLTEVERL-----CP 609


>gi|261342831|ref|ZP_05970689.1| DNA mismatch repair protein MutL [Enterobacter cancerogenus ATCC
           35316]
 gi|288314873|gb|EFC53811.1| DNA mismatch repair protein MutL [Enterobacter cancerogenus ATCC
           35316]
          Length = 614

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/603 (27%), Positives = 272/603 (45%), Gaps = 42/603 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +  G    R+  + G  F+ +A+ +  +  ++ L+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAEGGQKERRLGAICGTPFLEHALAIEWQHGDLALRGWV 240

Query: 238 GIPT-FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   +   A   Y ++NGR ++D+ I   IR A  E +   + P  VL L IDP QVD
Sbjct: 241 ADPKVSSAAFAEVQYCYVNGRMMRDRLINHAIRQACEEKLGADQQPAFVLYLNIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN------- 349
           VNVHPAK  +RF    ++ +FI Q +   + ++   T  +   +  +    +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVVSVLQQQAEPTLPLDDSEPSARSLPENRVAAGRN 360

Query: 350 -------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE-- 400
                  A +   P++A S +  +       N                 D   VE  E  
Sbjct: 361 HFAEPAVAREPAAPRFAASGSTPRATGANYPNAQPGYQKQQGALYRKLLDTPAVEHKERI 420

Query: 401 --------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                         G     I  +  + +    L+++    A   L   ++    N+   
Sbjct: 421 AVSTPSLDGHSQSFGRVLTIIAPDVALLEREGQLMLLALPVAERWLKQAQLTPGINAA-- 478

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL P  + +   E A++      L  +GI+        + IR +P  L ++N+  L
Sbjct: 479 CAQPLLIPVRLKITAQEAAVLQRATPLLAEMGIEI-ALEAQHVTIRAVPLPLRQQNLQNL 537

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  +   +T+              + + +          +   +L E+E+      
Sbjct: 538 IPELIGYLAQQTTSDAANTAQWIARHLASEHAA------WSMAQAITVLAEVERL----- 586

Query: 573 CNH 575
           C H
Sbjct: 587 CPH 589


>gi|312173800|emb|CBX82054.1| DNA mismatch repair protein mutL [Erwinia amylovora ATCC BAA-2158]
          Length = 613

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 169/601 (28%), Positives = 283/601 (47%), Gaps = 41/601 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGARLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ MA+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  CGIDKGELAMALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTEAQSEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ + S       +    S +G    R+  + G  F+ +A+++  + +E+ L G+ 
Sbjct: 181 ARFDVAISLSHNGKLVRQYRAVSDDGQRERRLGAICGTAFLTHALKIAWQHSELNLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  ++  +   Y ++NGR ++D+ I   IR AY + +     P  VL LEIDP QVDV
Sbjct: 241 ADPVGSKTLSELQYCYVNGRMMRDRLINHAIRQAYQDKLGDRHQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q +   + + G  T   + + +    +  +N       
Sbjct: 301 NVHPAKHEVRFHQSRMVHDFIYQGVVSVLQESGAETLPEIATVQPAERWQPENRQAAGGN 360

Query: 357 KYATSLT----------------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            ++T  T                  QE ++ +        LL +   +      P   ++
Sbjct: 361 HFSTPATAPAAAPRPALTGGGSWQRQEPVYQKREGAVYQQLLQTPARSEEPQTAPASATQ 420

Query: 401 A-------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                     +  G     + Q Y + +T + L ++    A   L   ++  +  S  + 
Sbjct: 421 NKEPPLSGHTHSFGRVLTVVQQQYALLETKNSLALLALAVAARWLKQAQL--EPGSEGLK 478

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P  + L + E       +  L+++GI    F  + + +R +P  L ++N+  L+
Sbjct: 479 PQPLLIPLRLKLEKAERDAGSRCNALLNQMGIDL-LFDAHHVMLRAVPLPLRQQNLQNLI 537

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            +++  +         Q  +   LA      S    +     +   LL E+E+      C
Sbjct: 538 PEMLGYLARHQEVTAYQ--LAQWLA----RQSASEHQHWNHSQAITLLAEVERL-----C 586

Query: 574 N 574
            
Sbjct: 587 P 587


>gi|254994810|ref|ZP_05277000.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str.
           Mississippi]
          Length = 595

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 197/596 (33%), Positives = 312/596 (52%), Gaps = 39/596 (6%)

Query: 35  LD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGF 92
           LD + ++ +  +I  GG++   + D+G G+  +E+  A   H TSK+ D D +NI + GF
Sbjct: 2   LDRSGATTINVLIDKGGRNLISVIDDGCGIPRDEMERAFICHATSKLPDNDLNNIRSMGF 61

Query: 93  RGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTI 151
           RGE L SI AV+   ++S+         I + G EK   + P A+  GT +EVRDLFF  
Sbjct: 62  RGEGLTSIAAVARTKMVSKYRGCTEAWSIVLEGGEKTRDLSPEALPCGTSIEVRDLFFAT 121

Query: 152 PARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           P RL FL++E+ ET  I D++ R A A    +F+ +      +K   +    +   R+ +
Sbjct: 122 PTRLKFLRTEKAETQSIVDLMYRFATARFSTAFSLTIADKQIFKYPAR---EDLMSRLWE 178

Query: 212 V--IGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
           +   G+ F   ++E+   S+ I + GY  +PTFNR   +  Y F+NGR V     +  I+
Sbjct: 179 MKPFGDAFREQSLEVRFHSDAINITGYISVPTFNRSRPDMIYTFVNGRPVHSTLFMGAIK 238

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
           +AY+E IP  R+PVVV+ +EI P  VDVNVHP+K  +RFRN   + + +++++  A++  
Sbjct: 239 SAYSEFIPRDRHPVVVMCMEILPGDVDVNVHPSKLEVRFRNRKQVYSVVVEALATALSSN 298

Query: 330 GIS--TSSVLSKKMISSFHQDNAPKTHLPKYAT---------------------SLTNTQ 366
                         +  F  DN P    P Y                         ++  
Sbjct: 299 VYRELPPRTPVGGGLDHFAVDNTPVLDTPHYGKVHDYGVAVGPKLSVQQTGGGGEFSSKP 358

Query: 367 EKLFLQENRLS-------TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           E       R +       +     +  P  S D++           LG A  Q+   YI+
Sbjct: 359 EHAIENPPRAAELFSFLGSGSSRRTTRPVLSYDSEAHIVPLIEELPLGNAVCQLFDRYIV 418

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC-ALIMEHDE 478
           S+  D ++IVDQHAAHERL +E M++      +  Q LL PE+++L       L+ E+ E
Sbjct: 419 SRAGDHVIIVDQHAAHERLTYEYMKKVTADEGMKRQVLLMPELVELDNEYELELLGEYKE 478

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L + G+  E  G   +A+RE+PAIL   ++  ++  I++ I++      ++++I+++  
Sbjct: 479 KLLKFGLVIEPMGSMVVAVREVPAILGVFDVKAMIAKIVESIVEVGDALFMREKIKHVCG 538

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+ACY SIRSGR ++  EMN LLR+ME  P+S QCNHGRPT++KL LS+I+KLF R
Sbjct: 539 TIACYSSIRSGRTLKLEEMNSLLRQMEDTPHSGQCNHGRPTYVKLSLSEIDKLFER 594


>gi|237729103|ref|ZP_04559584.1| DNA mismatch repair protein mutL [Citrobacter sp. 30_2]
 gi|226908832|gb|EEH94750.1| DNA mismatch repair protein mutL [Citrobacter sp. 30_2]
          Length = 622

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/610 (26%), Positives = 272/610 (44%), Gaps = 50/610 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIVSLGFRGEALASISSVSRLTLTSRTQEQPEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVVRQYRAVAADGQKERRLGAICGTPFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTAALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---------- 346
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +      +  H          
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLADDDEPAPRHIPENRVAAGR 360

Query: 347 -----QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
                   A +   P+Y+ S          ++   S     P       E    + ++ A
Sbjct: 361 NHFAEPAPAREPATPRYSASAGTGSGSSGGRQAGASWPHAQPGYQKQQGEIYQQLMQTPA 420

Query: 402 T-----------------HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                                 G     +  +  + +    + ++    A   L   ++ 
Sbjct: 421 PTRKTPVSETPSTPLAGSSQGFGRVLTIVGADCALLECDGHIRLLALPVAERWLRQAQL- 479

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
                  + +Q LL P  + +   E A + +    L  LGI+  +     + IR +P  L
Sbjct: 480 -TPGQGAVCAQPLLIPLRLKVTADEKAALHKGQSQLAELGIEF-QLDAQHVTIRAVPLPL 537

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            ++N+  L+ ++I  +   S               M+ +       +    +   LL ++
Sbjct: 538 RQQNLQILIPELIGYLAQQSVFEPGNIAQWIARNLMSEHP------QWSMAQAITLLADV 591

Query: 565 EKNPNSSQCN 574
           E+      C 
Sbjct: 592 ERL-----CP 596


>gi|312870472|ref|ZP_07730592.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311094029|gb|EFQ52353.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 675

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/659 (23%), Positives = 277/659 (42%), Gaps = 69/659 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L++ + +QIAAGE+IERP+  +KEL+ENSLDA+S RV+ ++   G    ++ D+G 
Sbjct: 3   QIHELNDILADQIAAGEVIERPASIVKELVENSLDAQSKRVDIIVENAGLDSIRVIDDGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +A +RH TSKI+   D   + T GFRGEALPSI +V+ + L +       G 
Sbjct: 63  GIAADDVELAFKRHATSKINSRQDLFRVQTMGFRGEALPSIASVADVELTTAIADATAGR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+ + +P     GT V V +LFF  PARL +LKS Q E   ITD+I R+A+A 
Sbjct: 123 TVHLRGGKLVTNQPAPARRGTDVRVTELFFNTPARLKYLKSPQTELARITDIINRLALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F+F+      ++    + N N  + I+ + G       + +    N+  + G+  +
Sbjct: 183 PQVAFSFTHNGKEIFR---SAGNDNLQQVIATIYGIQAGRKMLAVQGTDNDFRVTGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     + IN R V++  +   I   Y   + +GRYPV V+ +++DP  VDVNV
Sbjct: 240 PELTRASRQYITIMINHRYVRNYALTKAIIQGYESKLMVGRYPVAVINIDLDPVLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---SSVLSKKMISSFHQDNAPKTHLP 356
           HPAK  +R      +   I Q+I++ I ++ +     +   + +       D   + +  
Sbjct: 300 HPAKREVRLSKEDQLAKLIAQTIRQRIAQENLIPDVDADRFTPQPDPDLVDDLNRRLNEA 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
             +  +               T     S     ++  D    +    +Q     +   + 
Sbjct: 360 AASYGVDQADTAGASSAAAGVTPPQPTSTTKAGADTVDSQIPAPVIIHQSSELNSARMKE 419

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDLLEGECALIME 475
           +      + L  +   +       +          ++        E     + +    ++
Sbjct: 420 FDARYQDESLPALFNDSGRPAADSQSTAPVQTENLELDVHDKSDQETGRFPDLQYIGQLQ 479

Query: 476 HDEDLHRLG--------------IKAERFGPNAIAIRE------IPAILSKKNIPQLLR- 514
               L + G              I  ER+      +        +P +L+   +  L   
Sbjct: 480 GTFLLAQAGDGLYIVDQHAAQERINYERYRQEIGQVSADQQTFLVPLVLNYSTVDALAIS 539

Query: 515 ---DIID---------------------EIIDSSTTYTLQDRIENIL------------- 537
              D++                         +     T+++ I+ I+             
Sbjct: 540 NHADVLASVGLHLEHFGQNSFLLRSHPTWFKEGQEEDTVREMIDWIIKDGKLTVQQFRMK 599

Query: 538 --ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               M+C  +I++   +   E   LLR + +  N   C HGRP  +     D+EK+F R
Sbjct: 600 TAIMMSCKRAIKANHHLDDREARALLRRLPQCENPFNCPHGRPVTVHFNDRDLEKMFKR 658


>gi|313125312|ref|YP_004035576.1| DNA mismatch repair protein mutl [Halogeometricum borinquense DSM
           11551]
 gi|312291677|gb|ADQ66137.1| DNA mismatch repair protein MutL [Halogeometricum borinquense DSM
           11551]
          Length = 586

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/627 (26%), Positives = 280/627 (44%), Gaps = 88/627 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++RKL E+ +  IAAGE+I RP  A+ EL+EN+LDAE++RVE  + G G    ++ DNG 
Sbjct: 8   RVRKLDEETVASIAAGEVITRPEDAVVELVENALDAEATRVEVTVVGDGTDLLRVRDNGR 67

Query: 62  GMTSEEIPMAVQRHCTSKISD-----------------DFSNIHTFGFRGEALPSIGAVS 104
           GM+  +  +AV+RH TSK+ D                 D   + T GFRGEALPSI A  
Sbjct: 68  GMSETDAALAVERHTTSKLGDVAEGTSEGHRTSSGDAADLQTVSTLGFRGEALPSIAAAG 127

Query: 105 HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE 164
            L L++      T     +  E    V+P+    GT VEVRDLF  IPAR   L S + E
Sbjct: 128 TLELVT--NDGGTRGTRVVVAEDEKHVKPIGRARGTTVEVRDLFAEIPARRQSLASSRAE 185

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTI------KSNRYKMNFQSTNGNFPERISQVIGEDFI 218
              ++D + R A+  P V+F+               ++   S +G++ + I  V   D  
Sbjct: 186 FARVSDAVSRYALTRPDVAFSLVHETGGESPDGGGREVFSTSGSGDYADAILGVYDRDVA 245

Query: 219 --------NNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                      +  N ++  ++++G    P+  R   +  Y  +NGR    + +   +  
Sbjct: 246 GRSSTFESEREITDNGETVTVSVEGLLAHPSVTRSRRDHIYTAVNGRAFPSEPLRRAVVA 305

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y + +P GR PV V+ + + P   D NVHPAK  +R R    +   + +++  A++   
Sbjct: 306 GYGDVLPDGRAPVAVVSVSLPPPWCDHNVHPAKREVRLRAQRAVERTVREAVHDALSTAD 365

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
           +  S  +                     A  L +T E +  +E+R               
Sbjct: 366 LRRSEDV---------------------AMDLDSTLEPVDGEESR--------------- 389

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                        +       Q    Y++ +  D L+++D HAAHER+ +E++R    + 
Sbjct: 390 -------------FDGVRVIGQFRDLYLLCEADDDLLVIDHHAAHERVNYERLRAAVGAG 436

Query: 451 K---ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +   + S  +     + L   + A   E  ++L  LG + + FG + + +R +PA + + 
Sbjct: 437 EVNAVESIPIDPAATVSLSPAQAAATAEWRDELAHLGYELDSFGGDTVRVRGVPAPMGRA 496

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             P+ +RD +D +    T     DR   +L  +AC+ S+++G  + + E  RL+  +   
Sbjct: 497 AAPESVRDALDALRGGETPGDATDR---LLKDLACHPSLKAGDALNTEEATRLVERLGSC 553

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                C HGRPT + ++     + F R
Sbjct: 554 EQPYACPHGRPTVLSIEEETFVRGFER 580


>gi|153947725|ref|YP_001402609.1| DNA mismatch repair protein [Yersinia pseudotuberculosis IP 31758]
 gi|167012380|sp|A7FMY1|MUTL_YERP3 RecName: Full=DNA mismatch repair protein mutL
 gi|152959220|gb|ABS46681.1| DNA mismatch repair protein MutL [Yersinia pseudotuberculosis IP
           31758]
          Length = 635

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/625 (25%), Positives = 274/625 (43%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + +  
Sbjct: 61  CGISKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +            R++ + G  F+ +A+ +  +  ++ + G+ 
Sbjct: 181 ARFDVAINLNHNGKLIRQYRAAPDPAQHERRLASICGPAFLQHALAIAWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASHTLSEMQYCYVNNRMMRDRLINHAIRQAYQDRLNDAQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------A 350
           NVHPAK  +RF    ++ +FI Q++   + +      ++  +  + +             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTAVLQQTNAPILNISEEGEVDAPRWQQENRVAAGT 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN----------------- 393
            K   P+ A S    Q     + +          +D  Y +                   
Sbjct: 361 NKYAQPEAAKSSAAEQAVARERSSARERAAPAYKEDHPYQKQQGELYRQLLQPSAAAKPA 420

Query: 394 ----------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                                    E     +Y  G         Y + +   G+ ++  
Sbjct: 421 TSPAAIPASSVSSPSIPVQRITQAEEPLHGDNYSFGRVLTVFPPCYALIEYQGGVALLSL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
             A   L   ++        +  Q LL P  I L + E A    H++ L  +GI+     
Sbjct: 481 TVAERWLKQAQL--SPPEEGLRPQPLLIPLKITLDKNEIAACQNHEKLLITMGIELSVEQ 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT +A + GS    
Sbjct: 539 GRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DTLATWLARHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL E+E+      C 
Sbjct: 590 EVWNVSQAIQLLTEVERL-----CP 609


>gi|238755899|ref|ZP_04617227.1| DNA mismatch repair protein mutL [Yersinia ruckeri ATCC 29473]
 gi|238705858|gb|EEP98247.1| DNA mismatch repair protein mutL [Yersinia ruckeri ATCC 29473]
          Length = 623

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/613 (25%), Positives = 274/613 (44%), Gaps = 55/613 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   ++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + +  
Sbjct: 61  CGIAKGDLSLALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLMLTSRTAEQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R++ + G  F+ +A+ ++ +  +++++G+ 
Sbjct: 181 ARFDVAINLSHNGKLVRQYRAAPDPSQHERRLASICGPTFLQHALAISWQHGDLSIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P      +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPGAASTASEMQYCYVNHRMMRDRLINHAIRQAYQDLLTGEQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK----- 352
           NVHPAK  +RF    ++ +FI Q++   + +       V     I +       +     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQSAEPALMVSEHGEIDAPRWQPENRVAAGG 360

Query: 353 ----THLPKYA------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
                  P+ A      T+ +        +    +    +P          + ++ + AT
Sbjct: 361 NKYAQPQPEKAVCQREYTAPSTAANSPARERTAPAYTPSVPYQKQQGELYQELLKPAPAT 420

Query: 403 H-------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                               +  G         Y + +   GL ++    A   L   ++
Sbjct: 421 EPPLVQARKMFGDEPLRSGLHSFGRVLTVFPPCYAVLEYGAGLALLSLSVAERWLKQAQL 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                   +  Q LL P  + L + E A    H   L  +GI+       A  +R +   
Sbjct: 481 NPPTE--GLRPQPLLIPLKLTLDKTETAACKHHQNLLIAMGIELAIESGRA-TLRAVSLP 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQSIEMNRLL 561
           L ++N+ +L+ +++  +               +LAT +A + GS          +  +LL
Sbjct: 538 LRQQNLQKLIPELLGYLSQHKEMSP------EVLATWIARHLGS--EHEVWNISQAIQLL 589

Query: 562 REMEKNPNSSQCN 574
            ++E+      C 
Sbjct: 590 TDVERL-----CP 597


>gi|269926437|ref|YP_003323060.1| DNA mismatch repair protein MutL [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790097|gb|ACZ42238.1| DNA mismatch repair protein MutL [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 579

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 164/595 (27%), Positives = 286/595 (48%), Gaps = 41/595 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E+++  IAAGE+IE P+  +KEL+ENS+DA +S +   + GGG +   + D+G 
Sbjct: 22  RIRQLPEEVVRMIAAGEVIESPASVVKELVENSIDAAASSIRVDVKGGGLAHISVVDDGV 81

Query: 62  GMTSEEIPMAVQRHCTSKISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+ ++E+P+A+QRH TSK+ +     I T GFRGEALPSI AVS LT+ S     N G  
Sbjct: 82  GIAADELPVAIQRHATSKLPEGRLDAITTLGFRGEALPSIAAVSELTITSSAKGENVGRS 141

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +   K+ +      + GT+V  R LF  +PARL  +   QVE   I+ V+RR+ ++ P
Sbjct: 142 ITVRDGKVVADHAAPASGGTVVVARHLFRNVPARLAMVDKPQVEVGHISQVLRRLYLSSP 201

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT-GI 239
            ++    +       +   S  G+    + ++ G +   + ++L  +             
Sbjct: 202 HIALRLYSEGKM---LLSTSGQGDRLAALIELYGGELEEHILDLGIRELRYGRYRLILSD 258

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + +   + +N R  Q K +L+++  AY   +P GR+P+++L L++DP ++DVNV
Sbjct: 259 SAVTRPSRHHINIVVNNRWAQVKALLASMEQAYRGILPKGRHPILLLQLDLDPSRLDVNV 318

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  ++  +   +   + + ++ A+ K   S S  L    I  F  D           
Sbjct: 319 HPAKQEVKLLDEREVIESVCEQLRSALGK-NPSASKSLLYYGIEPFPSDY---------- 367

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                   +L + E R S +D                E+    +       AQ+H   I+
Sbjct: 368 -------SRLQVAEERESWSD----------------EKILTPNLPPVKVLAQLHDRLIV 404

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  +GL +VDQH AHER+++E+   +       +  L  P +I+L   +   + E+ ++
Sbjct: 405 LEGDEGLYLVDQHRAHERVLYERFLTERMDGS-EALLLSEPVVIELRTHQVQKLAEYMDE 463

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L  LG + E FG NA+ +R +P    +        D++  + D  + +      ++ L T
Sbjct: 464 LSALGFECEVFGRNALLVRAMPDAGKEIGDHLTTSDLLWILQDEPSAFEDPGNWKHRLIT 523

Query: 540 -MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            MAC  ++R G+ ++   M  ++  +      + C HG P    L    + + F 
Sbjct: 524 RMACRMAVRRGKSLEHDHMVWIVERLGHTSVPAICPHGSPIIRYLPRESLYRDFE 578


>gi|332083167|gb|EGI88398.1| DNA mismatch repair protein mutL [Shigella boydii 5216-82]
          Length = 615

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/605 (26%), Positives = 271/605 (44%), Gaps = 47/605 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+EN LDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENCLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRAIPENRVAAGR 360

Query: 345 --FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD------DPTYSEDNDPV 396
             F +  A +   P+Y+ +  +         N          +                V
Sbjct: 361 NHFAEPAAREPVAPRYSPAPASGSRPAAPWPNAQPGYQKQQGEVYRQLLQTPAPMQKPKV 420

Query: 397 EESE-----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            E +     A     G     +H +  + +    + ++    A   L   +++       
Sbjct: 421 PEPQEPALAANSQSFGRVLTIVHSDCALLERDGNISLLALPVAERWLR--QVQLTPGEAP 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + +   E + + +    L  LGI  +      + I  +P  L ++N+  
Sbjct: 479 VCAQPLLIPLRLKVSGEEKSALEKAQSALAELGIDFQS-DAQHVTIMAVPLPLRQQNLQI 537

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           L+ ++I  +     +      I   +A   M+ +       +    +   LL ++E+   
Sbjct: 538 LIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMAQAITLLADVERL-- 587

Query: 570 SSQCN 574
              C 
Sbjct: 588 ---CP 589


>gi|322831154|ref|YP_004211181.1| DNA mismatch repair protein MutL [Rahnella sp. Y9602]
 gi|321166355|gb|ADW72054.1| DNA mismatch repair protein MutL [Rahnella sp. Y9602]
          Length = 639

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/576 (27%), Positives = 262/576 (45%), Gaps = 60/576 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIKVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIDRGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGIGKDDLALALARHATSKITCLDDLEAILSLGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ VEV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPQGSTVEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   VS   S       +         F  R++ +    F+ +A+E+     ++ + G+ 
Sbjct: 181 ARFDVSVNLSHNGKLIRQYRAVKDRSQFSRRLASICSPAFVEHALEVEWSHGDLAIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++N R ++D+ I   IR AY + +   + P  VL L++DP QVDV
Sbjct: 241 ADPAGSRSLTDMQYCYVNNRMMKDRLINHAIRQAYQDQLKDDQQPAYVLYLDVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS------------------------- 332
           NVHPAK  +RF    ++ +FI Q++   + + G                           
Sbjct: 301 NVHPAKHEVRFHQSRLVHDFIYQAVMSVLQQAGAPVLDEPQLQEDTPRWQQENRQAAGGN 360

Query: 333 -------------------TSSVLSKKMISSFHQDNAPKTHLPKYATSLT--------NT 365
                                +V  +   +S  +++A ++  P Y  S +          
Sbjct: 361 HFSQPAERKVPASRENNSLRENVFPETARASQPRESAYRSTEPAYNPSESKAYGRLLQPA 420

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
            E   LQE   +                +P  ES       G         Y + +    
Sbjct: 421 PESFSLQEPAPAVAQPAKPAVSVARTLTEPALES--HSQSFGRVLTVCSAEYALLERGKQ 478

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           LV++    A   L + ++        +  Q LL P  + + + E A++  H   L   G+
Sbjct: 479 LVLLALPVADRWLKWAQLTPP--EEGLRPQPLLIPLKLTMQKEETAVLARHQALLQHFGL 536

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           +        + +R +P  L ++N+ +L+ D++  + 
Sbjct: 537 EMLSESQR-VTVRAVPLPLRQQNLQKLIPDLLGYLA 571


>gi|238764690|ref|ZP_04625634.1| DNA mismatch repair protein mutL [Yersinia kristensenii ATCC 33638]
 gi|238697086|gb|EEP89859.1| DNA mismatch repair protein mutL [Yersinia kristensenii ATCC 33638]
          Length = 631

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/621 (25%), Positives = 282/621 (45%), Gaps = 63/621 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIDRGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGIGKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +       R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAATDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---KGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHPAK  +RF    ++ +FI Q++   + +     ++ +    +     +  +N     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQAATPRLNINEDGEEIEAPRWQPENRVAAG 360

Query: 355 LPKYATSL---------------TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
             KYA                  + T E+   +E   + +   P            V+ +
Sbjct: 361 GNKYAQPEPAKTAPVTRTSSPERSATTERSIAREPAPAYSAGQPYQKQQGELYRQLVQPA 420

Query: 400 ------------------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                                      +Y  G         Y + +   G+ +++   A 
Sbjct: 421 VVNKPAAGSQAAVAPRQRLNDEPLRGDNYSFGRVLTVFPPCYALIEYKQGVALLELTVAE 480

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
             L   ++        +  Q LL P  + L + E A    H + L  +GI+       A 
Sbjct: 481 RWLKQAQLNPPTE--GLRPQPLLIPLKLTLDKNEAAACQRHQKLLVTMGIELAVEHEKA- 537

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQ 553
            +R +   L ++N+ +L+ +++  +              + LAT ++ + GS        
Sbjct: 538 TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWISRHLGS--EHEVWN 589

Query: 554 SIEMNRLLREMEKNPNSSQCN 574
             +  +LL ++E+      C 
Sbjct: 590 VSQAIQLLADVERL-----CP 605


>gi|310821741|ref|YP_003954099.1| DNA mismatch repair protein MutL [Stigmatella aurantiaca DW4/3-1]
 gi|309394813|gb|ADO72272.1| DNA mismatch repair protein MutL [Stigmatella aurantiaca DW4/3-1]
          Length = 602

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/602 (26%), Positives = 281/602 (46%), Gaps = 16/602 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + +IN+IAAGE++ERP+  +KEL+ENSLDA +  V+  + GGG     ++D+G 
Sbjct: 3   RIARLRDDLINKIAAGEVVERPASVVKELVENSLDAGAHTVQVALEGGGLQRIVVSDDGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  + ++RH TSK+   DD  N+ + GFRGEALP+I AVS  TL +  P+   G 
Sbjct: 63  GMGREDAVLCLERHATSKLRELDDLENLVSKGFRGEALPAIAAVSRFTLHTAEPEAEVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G     V       GT++ V DLF+  PARL F++  + E   + + + R+A+A+
Sbjct: 123 RVTVEGGAGLHVEEAPPRVGTVMTVEDLFYNTPARLKFMRRGETELKHVEEAVIRIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF         +         +  ERI+  +G D   +   + E+   +++ G+   
Sbjct: 183 PEVSFLVEHGGLPLFTSPACP--EDPTERIAAALGTDVHPHLFSVEERRLGLSITGHIAS 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +    A   Y F+N R V+D+ ++  I+  Y E +P GR P+VVL ++++P  VDVNV
Sbjct: 241 PEYTLPTARGIYTFVNHRYVRDRGLIGAIQRGYQEYLPSGRQPLVVLFIDVEPHAVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           HP K  +RF +   + + ++ +I + +        T          + H   A +  L +
Sbjct: 301 HPQKMEVRFADSRGVYDAVLAAIVRTLRAAPWLGPTPPEGGDPRRQAAHYAQAVERFLTR 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP-------VEESEATHYQLGIAC 410
              +       L    +  ++  L+P+                   E     ++      
Sbjct: 361 AQEATWGAPLPLPSAADAPASLSLVPAAPVPMGRAPAFGQALPQLNEAPPPGYFAALRPM 420

Query: 411 AQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             +   + + +   G LV++D HAA ER+      +     K T    L    ++L    
Sbjct: 421 GVLGGRFQVCEGPGGTLVVLDPHAALERVRLMDFHRLLEEGK-TPPPSLFGTTVELPVPA 479

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
              +M   E L  LGI  E FG  + A++ +P  L   +   LL  +   +  + T    
Sbjct: 480 ARALMGGRESLALLGIDVEPFGGTSFALKAVPPGLEGADPRALLEALSHALPPAGTPPDA 539

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               E  L  MAC+ +  +  K+   ++  LL E++       C HG    +++ L ++E
Sbjct: 540 VGLAEA-LRVMACHAAQTASDKLTDAQLRALLGELDAADFHPTCRHGTVVVLEMPLLELE 598

Query: 590 KL 591
           + 
Sbjct: 599 RR 600


>gi|238784776|ref|ZP_04628778.1| DNA mismatch repair protein mutL [Yersinia bercovieri ATCC 43970]
 gi|238714289|gb|EEQ06299.1| DNA mismatch repair protein mutL [Yersinia bercovieri ATCC 43970]
          Length = 633

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/623 (25%), Positives = 279/623 (44%), Gaps = 65/623 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGVKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGINKEDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +   +   R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAATDPSHHERRLASICGLAFLQHALAVSWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLGEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG---ISTSSVLSKKMISSFHQDNAPKTH 354
           NVHPAK  +RF    ++ +FI Q++   + +     ++ +    +     +  +N     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQTATPILNVNDDGEEIEAPRWQPENRVAAG 360

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES--------------- 399
           + KYA            +      + +     P YS      ++                
Sbjct: 361 VNKYAQPEPTQAHPAERRAPPERVSPVREQAAPGYSAGQPYQKQQGELYRQLVQPAAVTH 420

Query: 400 --------------------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                                     +  HY  G     +   Y + +   G+ ++    
Sbjct: 421 PAEPRTPAVAPPLPPLPRQTSADAPLQGDHYSFGRVLTVLPPCYALIEYKQGVALLALKV 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A   L   ++        +  Q LL P  + L + E A    H   L  +GI+       
Sbjct: 481 AERWLKQAQLNPPPE--GLRPQPLLIPLKLTLDKIEAAACQRHQALLVTMGIELAVEQGR 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRK 551
           A  +R +   L ++N+ +L+ +++  +              + LAT +A + GS      
Sbjct: 539 A-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWLARHLGS--EHEV 589

Query: 552 MQSIEMNRLLREMEKNPNSSQCN 574
               +  +LL ++E+      C 
Sbjct: 590 WNVSQAIQLLTDVERL-----CP 607


>gi|295098326|emb|CBK87416.1| DNA mismatch repair protein MutL [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 614

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 157/577 (27%), Positives = 265/577 (45%), Gaps = 39/577 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTADQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +  G    R+  + G  F+  A+ +  +  ++ L+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAEGGQKERRLGAICGTPFLEKALAIEWQHGDLALRGWV 240

Query: 238 GIPT-FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   +   A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNASSAAFAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN------- 349
           VNVHPAK  +RF    ++ +FI Q +   + ++      +  ++       +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVAAVLQQQAKPELPLAKEEPAPRPLPENRVAAGRN 360

Query: 350 ----------------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                           +P  + P+   +     +  + ++       LL +    + E  
Sbjct: 361 HFAEPAVAREPAAPRLSPAGNAPRPTGANYPNAQPGYHKQQGALYRKLLDTPAVEHKEHI 420

Query: 394 DPVEES-EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                S +      G     I  +  + +    L+++    A   L   ++    N+   
Sbjct: 421 TVSTPSLDGHSQSFGRVLTIIAPDMALLEREGKLLLLALSVAERWLKQAQLTPGMNAA-- 478

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL P  + +   E  ++      L  +GI+        + IR +P  L ++N+  L
Sbjct: 479 CAQPLLIPVRLKISPEETGVLRRVQTQLAEMGIEI-VLDAQHVTIRAVPLPLRQQNLQNL 537

Query: 513 LRDIIDEIIDS---STTYTLQDRIENILA-----TMA 541
           + ++I  +          T Q    ++ +     +MA
Sbjct: 538 IPELIGYLAQQTTFDAADTAQWIARHLASEHAPWSMA 574


>gi|283834788|ref|ZP_06354529.1| DNA mismatch repair protein MutL [Citrobacter youngae ATCC 29220]
 gi|291069034|gb|EFE07143.1| DNA mismatch repair protein MutL [Citrobacter youngae ATCC 29220]
          Length = 617

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/607 (26%), Positives = 273/607 (44%), Gaps = 49/607 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIVSLGFRGEALASISSVSRLTLTSRTQEQPEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVVRQYRAVAADGQKERRLGAICGTSFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTAALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN------- 349
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +      +  H          
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLSDDDEPAPRHIPENRIAAGR 360

Query: 350 ------------------APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD--DPTY 389
                             AP     + A +     +  + ++       LL +    P  
Sbjct: 361 NHFAEPAPAREAAAPRYSAPAGGTGRQAGASWPHAQPGYQKQQGEIYQQLLQTPVLPPKA 420

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +    P           G     +  +  + +    + ++    A   L   ++      
Sbjct: 421 TVSETPSAPLTGNSQGFGRVLTIVGADCALLECEGHIRLLALPVAERWLRQAQL--TPEQ 478

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P  + +   E A + +    L  LGI+  +     + IR +P  L ++N+
Sbjct: 479 GAVCAQPLLIPLRLKVTADEKAALQKGQSQLAELGIEF-QLDAQHVTIRAVPLPLRQQNL 537

Query: 510 PQLLRDIIDEIIDSS--TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             L+ ++I  +   S      +   I   L +   +       +    +   LL ++E+ 
Sbjct: 538 QILIPELIGYLAQQSVFEPGNIAQWIARNLISE--HS------QWSMAQAITLLADVERL 589

Query: 568 PNSSQCN 574
                C 
Sbjct: 590 -----CP 591


>gi|123440758|ref|YP_001004750.1| DNA mismatch repair protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166232113|sp|A1JIR3|MUTL_YERE8 RecName: Full=DNA mismatch repair protein mutL
 gi|122087719|emb|CAL10504.1| DNA mismatch repair protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 635

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/625 (25%), Positives = 277/625 (44%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SR++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGIGKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAAPDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS------------------------- 332
           NVHPAK  +RF    ++ +FI Q++   + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQTATPLLNINEDGEEIEAPRWQPENRVAAG 360

Query: 333 ------------------TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
                             +S   +     S  ++  P  H  +          +  +Q  
Sbjct: 361 ANKYAQPEPANTVPVVRTSSPERTATTERSIARERTPTYHAGEPYQKQQGELYRQLVQPA 420

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATH---YQLGIACAQIHQNYIISQTTDGLVIVDQ 431
            ++    +       +     +   E  H   Y  G         Y + +   G+ +++ 
Sbjct: 421 AVNKPAAVSQPSAASAPVARQISTDEPLHGDNYSFGRVLTVFPPCYALIEYKQGIALLEL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
             A   L   ++     +  +  Q LL P  + L + E      H + L  +GI+     
Sbjct: 481 TVAERWLKQAQLNPP--AEGLRPQPLLIPLKLTLDKNEATACQRHQKLLATMGIELAVEH 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT ++ + GS    
Sbjct: 539 TRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWISRHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL ++E+      C 
Sbjct: 590 EVWNVSQAIQLLTDVERL-----CP 609


>gi|291460843|ref|ZP_06025503.2| DNA mismatch repair protein MutL [Fusobacterium periodonticum ATCC
           33693]
 gi|291380371|gb|EFE87889.1| DNA mismatch repair protein MutL [Fusobacterium periodonticum ATCC
           33693]
          Length = 646

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 178/658 (27%), Positives = 304/658 (46%), Gaps = 85/658 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA+S  ++  +  GG     I+D+G 
Sbjct: 8   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAKSKEIKLEVWNGGLD-ISISDSGC 66

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR   +  G 
Sbjct: 67  GMSKEDLLLSIERHATSKIITKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDSPNGT 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ +  E   I D+  R A+A 
Sbjct: 127 QMNVLGGKVTNLKDIQKNVGTQIEIKDLFYNTPARKKFLRKDTTEYLNIKDIFLREALAN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       +    ++       I ++ G++++ N  + +         GY G 
Sbjct: 187 PNVKFILNIEGKESIR----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 234

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ L+IDP ++DVNV
Sbjct: 235 ANLFKANKDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPSALIFLDIDPAEIDVNV 294

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  ++F N + I + +   I+K  +      S     ++     +    KT   +Y 
Sbjct: 295 HPSKKIVKFANQSAIYDLVKGEIEKFFSDDENFISP--HIEVEDEEVETFEEKTEKVEYP 352

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA------------------ 401
           ++          ++  LS   ++  DD    + ND  +E +                   
Sbjct: 353 SNNFLDINDFKDEKQNLSQLSVVQKDDYLKKDYNDIKDEKQNIVNIDNVIKTSSNEIKEN 412

Query: 402 ---------------------------THYQLGIACAQIHQNYIISQTTDGLVI---VDQ 431
                                             +  +I  ++   +  D  VI    D 
Sbjct: 413 IETFKKVGSDFDLIEKEVETEKTKDKYIFKNEDTSRGKIFDDFSTLKNIDFRVIGQVFDT 472

Query: 432 HAAHERLIF----------EKMRQDFNSTKITSQTL-----LTPEIIDLLEGECALIMEH 476
               ER             E++  +    +  S ++     L P   +L   E  L +E+
Sbjct: 473 FILVERNNLLEIYDQHIIHERILYEKLKQEYYSHSMTKQNLLVPIRFELDPREKQLALEN 532

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E     G   + F  N I +R  P +  + +   ++++I+D I  +      +D  ENI
Sbjct: 533 TEIFSSFGFDIDDFEKNEILLRTTPTMNLRDSYENIIKEILDNISKNRD----KDIRENI 588

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +M+C G+I++  K+   EM  ++ ++ +      C HGRP  +K+ L D+EKLF R
Sbjct: 589 IVSMSCKGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPHGRPIIVKMSLLDLEKLFKR 645


>gi|157147861|ref|YP_001455180.1| DNA mismatch repair protein [Citrobacter koseri ATCC BAA-895]
 gi|166232083|sp|A8AMN1|MUTL_CITK8 RecName: Full=DNA mismatch repair protein mutL
 gi|157085066|gb|ABV14744.1| hypothetical protein CKO_03665 [Citrobacter koseri ATCC BAA-895]
          Length = 619

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/607 (27%), Positives = 275/607 (45%), Gaps = 47/607 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKMVRQYRAVAQDGQKERRLGALCGAPFLEQALVIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   R P  VL LEIDP QVD
Sbjct: 241 ADPHHTTAALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGGDRQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +                 
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLPLAEEAPAPRHIPENRVAAGRN 360

Query: 345 --FHQDNAPKTHLPKYATSLTNT-----------QEKLFLQENRLSTNDLLPSDDPTYSE 391
                 +A +   P+Y+TS   T            +  + ++       LL +  P    
Sbjct: 361 HFAEPASAREPAAPRYSTSSGATGGRQPAASWPHAQPGYQKQQGEVYRQLLQTPAPRQPA 420

Query: 392 DNDPVEESEA----THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                E +           G     +  +  + +    + ++    A   L   ++    
Sbjct: 421 LAPEAETAAPSLAGHSQSFGRVLTIVGADCALLERDGNIHLLALPVAERWLRQAQL--TP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
             T + +Q LL P  + +   E + + +    L  LGI+ +      + IR +P  L ++
Sbjct: 479 GQTPVCAQPLLIPLRLKVSAEEKSALEKAQTPLTDLGIEFQS-DAQHVTIRAVPLPLRQQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           N+  L+ ++I  +   S               M+ +       +    +   LL ++E+ 
Sbjct: 538 NLQILIPELIGYLAQQSAFDAGNIAQWIARNLMSEHP------QWTMAQAITLLADVERL 591

Query: 568 PNSSQCN 574
                C 
Sbjct: 592 -----CP 593


>gi|194445394|ref|YP_002043614.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|238693596|sp|B4T2R5|MUTL_SALNS RecName: Full=DNA mismatch repair protein mutL
 gi|194404057|gb|ACF64279.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 618

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F  S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTFNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E   + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKDALQQAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|260599482|ref|YP_003212053.1| DNA mismatch repair protein [Cronobacter turicensis z3032]
 gi|260218659|emb|CBA33989.1| DNA mismatch repair protein mutL [Cronobacter turicensis z3032]
          Length = 634

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 164/623 (26%), Positives = 273/623 (43%), Gaps = 64/623 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  GGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTADQHEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +      N     R+  + G  F+  A+ +  +  ++ L G+ 
Sbjct: 181 ARFDVTINLSHNGKMMRQYRAVQGNAPRERRLGSICGPAFLEQALAIEWQHGDLALHGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + + + + P  VL LEIDP QVD
Sbjct: 241 AEPKATTAALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGIDQQPAYVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHL 355
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  S     +    +H +N      
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVVSVLQQQAANPLSLNEPAEDAPRWHPENRVAAGK 360

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT--------------------------- 388
            ++A      +E+  ++E+    +    +   T                           
Sbjct: 361 NQFADPAPRERERATIRESDAPRHASGGASAGTGRSGASNGGWPNATPGYQKQQGALYKQ 420

Query: 389 -----------------YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
                              E   P    E   +  G     + +N  + +    L+++  
Sbjct: 421 LLETPAVTSPVAPATAATRETAPPAPALEGHSHSFGRVLTLVSENVALLERDGKLMLLAL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
             A   L   ++          +Q LL P  + +   E  ++      L RLGI+     
Sbjct: 481 SVAERCLKQAQLLPR--DEAPCAQPLLIPVRLKISGDEREVMTRAQPQLARLGIEI-VLD 537

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
            + + IR +P  L ++N+  L+ ++I  +      Y        +   +A +  I   + 
Sbjct: 538 GHHVTIRAVPLPLRQQNLQILIPELIGYLAQQPNAYDA-----AVAGWLARHLVI--AQP 590

Query: 552 MQSIEMNRLLREMEKNPNSSQCN 574
               +    L E+E+      C 
Sbjct: 591 WSVAQAIATLAELERL-----CP 608


>gi|300362259|ref|ZP_07058435.1| DNA mismatch repair protein HexB [Lactobacillus gasseri JV-V03]
 gi|300353250|gb|EFJ69122.1| DNA mismatch repair protein HexB [Lactobacillus gasseri JV-V03]
          Length = 630

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/635 (27%), Positives = 292/635 (45%), Gaps = 53/635 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA SSR+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSSRIRIDFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ +++    N  G 
Sbjct: 63  GIAKDQLDLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVIT-SSDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G +       +   GT + V DLFF  PARL +L+SE+ E   I D++ R+A+ +
Sbjct: 122 RAIFVGSEKKLQEDASSPKGTKISVSDLFFNTPARLKYLRSERTEILKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+FT +       K N      +  + I+ + G         L   S +  + G    
Sbjct: 182 PDVAFTLTNNGKILLKTN---GRNDLRQDIANIYGRQLAEKMEVLKGTSPDFKITGLLSD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSNRNFISLLLNGRYIKNYRLTQAIIAGYGSKLRPRRYPIAVVNIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  +R      +   +  SI +A+++     S                         
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALDQTSQINSGLNNLLTPKKSTNIDQLKFNLNKDV 358

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTN--------------TQEKLFLQENRLSTND 380
               + +  +   +      + + A S  N              + ++   ++ +LS  D
Sbjct: 359 VDTVRPVEFTPQMEADKSAEVHETAASFVNLDKVRNDDKYVITASWDENVDKQVQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A +    I   Q  ++Y++++  + L ++DQ AA+ RL +
Sbjct: 419 EEKDIQGKDDSLISSGDEILANNLPELIYLGQT-KSYLVARHDEDLYLIDQIAAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++  D NS  I+ Q LL+P I+D    +   + E+  +L  LGI  E FG N++ +R  
Sbjct: 478 DQIFHDLNSENISQQGLLSPLILDFSNVDYLKLKENLNNLQELGIFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL--ATMACYGSIRSGRKMQSIEMN 558
           P  L + ++ + +R I+D  ++ +           I    TM    S R  R +  +E  
Sbjct: 538 PIWL-QPDVEKNVRMILDLYLNQNE-QDFTKLKAQIAGEITM--RQSTRR-RNLNPVEAQ 592

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            LL+++  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 593 ELLKDLRNSSDPYQDFEGKIIIIQLSENDLNKMFK 627


>gi|146310018|ref|YP_001175092.1| DNA mismatch repair protein [Enterobacter sp. 638]
 gi|167017340|sp|A4W5R1|MUTL_ENT38 RecName: Full=DNA mismatch repair protein mutL
 gi|145316894|gb|ABP59041.1| DNA mismatch repair protein MutL [Enterobacter sp. 638]
          Length = 613

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/573 (27%), Positives = 270/573 (47%), Gaps = 37/573 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTSEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +  G    R+  + G  F+  A+ +  +  ++ ++G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAEGGQKERRLGAICGTAFLEQALAIEWQHGDLAMRGWV 240

Query: 238 GIPT-FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   N   A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPKTMNATLAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------ 344
           VNVHPAK  +RF    ++ +FI Q +   + ++    S  L++  IS             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQA-EPSLPLTEDAISPRPIPENRVAAGR 359

Query: 345 ---FHQDNAPKTHLPKYATSLTNTQE--------KLFLQENRLSTNDLLPSDDPTYSED- 392
                   A +   P+Y++  +  +          ++ ++     + LL +      E+ 
Sbjct: 360 NQFAEPAVARQPEAPRYSSGASAPRPTGANYPHAPVYQKQQGALYSKLLDTPAVERKENV 419

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                  +      G     I  +  + +    + ++    A      ++++    +   
Sbjct: 420 APSAPALDGHSQSFGRVLTIIAPDMALLERDSHIALLALPVAERW--LKQVQLTPGTNAA 477

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL P  + +   E A++      L  +GI+      + + IR +P  L ++N+  L
Sbjct: 478 CAQPLLIPVRLKVSAEEVAVLNRAKAVLVEMGIEF-VVEAHHVTIRAVPLPLRQQNLQNL 536

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
           + ++I  +   ++              MA + +
Sbjct: 537 IPELIGYLAQQTSFDAANTAQW-----MARHLA 564


>gi|149196337|ref|ZP_01873392.1| DNA mismatch repair protein [Lentisphaera araneosa HTCC2155]
 gi|149140598|gb|EDM28996.1| DNA mismatch repair protein [Lentisphaera araneosa HTCC2155]
          Length = 639

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 177/643 (27%), Positives = 303/643 (47%), Gaps = 61/643 (9%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + LS +I N+IAAGE++ERP+  +KEL++N++DA ++R+       G S  +++DNG GM
Sbjct: 5   KVLSAEIANRIAAGEVVERPASVLKELVDNAVDAGATRIIVRTENAGTSLIEVSDNGSGM 64

Query: 64  TSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
                 + +++H TSKI+D  D   I ++GFRGEA+PS+ +VS  T+++R   +  G  I
Sbjct: 65  NQNNALLCLEQHATSKITDASDLDAISSYGFRGEAIPSVASVSRFTILTRLHDDLEGTMI 124

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            ++G +I+SV  +   PGT + V  LF+ +PAR  FLKS++ E   I +   +MA++ P 
Sbjct: 125 QVNGGEIASVEKIGCAPGTCIRVAKLFYNVPARKKFLKSQRTEDFHIQETFIQMALSRPD 184

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           +       K   + +     + +   R+S  +  D +   +E++ +   I+++G    P 
Sbjct: 185 IHMELHCDKRKVFNI---PPSQDTRTRLSSFVSRDQVKEMMEVDYQEAGISVKGLCSRPG 241

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
             RGN+ +   FIN R +    I   IR AY   I  G++   +L +EIDP +VD+NVHP
Sbjct: 242 LARGNSREQRFFINQRPIIAPEINRAIRNAYEGIINKGQFAPCILYIEIDPSRVDINVHP 301

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP----- 356
           AK  +RFR P +I   I  S++ A+ +   S   +++   ++   Q  + +  L      
Sbjct: 302 AKREVRFREPQLICQVISHSLELALRQLSGSQQKLVAPTFLNPAIQVTSSRVSLSLDTAK 361

Query: 357 ----------------------------KYATSLTNTQEKLFLQENRLST-NDLLPSDDP 387
                                        +  S+  T+ +      R    N +  S+ P
Sbjct: 362 NLSENNELNKQQAEARKDLTSVNVDSQISHQNSVDLTKSEAVQHPPRKEEVNPVPSSNAP 421

Query: 388 TYSEDNDPVEESEATHY-------------QLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
             +   + V ES+                       +  +  Y+I Q  +GL+I+   AA
Sbjct: 422 QVNPAQNEVPESKPEIQSTSIEKKEFSHGLDKLDIISFYNSEYLICQGDNGLIILSLKAA 481

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
            ER++FE+M  ++ S    +Q LL P  ++L   +  LI ++   L  LG+    FG N 
Sbjct: 482 RERIVFEQMLNNYRSNIDHTQALLIPVSLELNHSDSHLIEKYHSQLSELGLGLRHFGANT 541

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY---GSIRSGRK 551
             +   P    + N+  L+R IID +  S  +      +   LA   C      I+    
Sbjct: 542 WLLDSTPLSFPEDNLFGLIRKIIDLLHHSPESLKRDIHLN--LAKTICKATSSHIKFNET 599

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                  ++L E++K      C  GRP FI +  ++++K FGR
Sbjct: 600 SS----EKILLELDKCETPYSCPQGRPVFINISDNELKKRFGR 638


>gi|238795251|ref|ZP_04638834.1| DNA mismatch repair protein mutL [Yersinia intermedia ATCC 29909]
 gi|238725419|gb|EEQ16990.1| DNA mismatch repair protein mutL [Yersinia intermedia ATCC 29909]
          Length = 638

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/628 (25%), Positives = 275/628 (43%), Gaps = 70/628 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIHILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGIGKEDLSLALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAAPDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF    ++ +FI Q++   + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQAASPVLNINEDGEEIEAPRWQPENRVAAG 360

Query: 331 ---ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--------------- 372
               +                    T  P  AT+ +  +E+                   
Sbjct: 361 GNKYAQPEPAKASPAERTRVAEKVSTSEPTVATARSPAREQAAPGYSAGQPYQKQQGELY 420

Query: 373 ----ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
               +    +  +      +        E     +Y  G        +Y + +   G+ +
Sbjct: 421 RQLVQPAAVSQAVDQPAKASAPRSASTDEPLHGDNYSFGRVLTVFPPSYALIEYKQGVAL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +    A   L   ++     +  +  Q LL P  + L + E A  + H   L  +GI+  
Sbjct: 481 LALTVAERWLKQAQLNPP--AEGLRPQPLLIPLKLTLDKNEAAACLRHQNLLVTMGIELA 538

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSI 546
                A  +R +   L ++N+ +L+ +++  +              ++LAT +A + GS 
Sbjct: 539 VEQTRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DVLATWIARHLGS- 590

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCN 574
                    +  +LL ++E+      C 
Sbjct: 591 -EHEVWNVSQAIQLLTDVERL-----CP 612


>gi|217077091|ref|YP_002334807.1| DNA mismatch repair protein MutL [Thermosipho africanus TCF52B]
 gi|226723042|sp|B7IHA2|MUTL_THEAB RecName: Full=DNA mismatch repair protein mutL
 gi|217036944|gb|ACJ75466.1| DNA mismatch repair protein MutL [Thermosipho africanus TCF52B]
          Length = 568

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 171/595 (28%), Positives = 292/595 (49%), Gaps = 32/595 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL E +I +IAAGE++  P   +KEL+ENSLDA ++++E  I  GGKS+ ++ DNG 
Sbjct: 3   KIKKLPEHVIGKIAAGEVVAGPYSVVKELVENSLDAGATKIEIEIKSGGKSYIKVKDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++ +++  H TSKI+  DD  N+ +FGFRGEAL SI  VS + + S     +   
Sbjct: 63  GMGREDLLLSIYEHTTSKINDFDDIYNLSSFGFRGEALASIAKVSRIVITSNNGSESHRL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      K  +  P+    GTIVEV DLFF +PAR  FLKSE  E   + + + +  ++ 
Sbjct: 123 EAIGGKIKSVNEYPLV-EKGTIVEVYDLFFNVPARRKFLKSEATEKRYVVEYVEKFLLSN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F F       Y         N  ER   +  E      V+     N   ++G    
Sbjct: 182 PDVEFIFRADNEIIYNARA----SNLEERFKLIFPE------VKEYTLINGKYVEGIISS 231

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P ++R N      F+  R V DK +       Y E +    +P  VL + +  + VDVNV
Sbjct: 232 PNYHRKNRTGQIFFVQKRFVMDKMLYYIFENGYGEAL--VDHPYGVLFINVPSKLVDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  ++F NP II + I +++++A+ K        +SK++      +   K+ +  + 
Sbjct: 290 HPQKLEVKFSNPNIIYSDITRTVREALKKF-------VSKQIFVKPINEKKTKSEVSSFE 342

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           T   N     F    +   N +            + + +    + ++      + + Y++
Sbjct: 343 TKNVNFSNDSF----QDKFNSVFKESVNHVDYSKNMLFDISEKNLEVKNDVVILKKRYVL 398

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  DG+ I+D HAAHER+I+E++ +      I    L+ P  I + +    +++E  ++
Sbjct: 399 FEMEDGIYIMDFHAAHERVIYEQILEKLK-VGIEKIDLIIPIEIKVGKSLKQIVIEKLDE 457

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G + +     ++ I  IP+ +   ++  + ++IID   +          +++I+A 
Sbjct: 458 LKENGFEIKVENE-SVKILSIPSFIKPSDVDDIFKEIID---EYRIPSMGTKNMKHIIAD 513

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  ++R+G  +   E  +L+ E+ K  N + C HGRP F+K+  ++I+K F R
Sbjct: 514 KACKSAVRTGYDITEGEAKKLIEEVFK-RNLTTCPHGRPLFLKITFNEIDKYFDR 567


>gi|330831015|ref|YP_004393967.1| DNA mismatch repair protein mutL [Aeromonas veronii B565]
 gi|328806151|gb|AEB51350.1| DNA mismatch repair protein mutL [Aeromonas veronii B565]
          Length = 624

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 167/560 (29%), Positives = 276/560 (49%), Gaps = 33/560 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + NQIAAGE++ERPS  +KEL+ENSLDA + RVE  I  GG    +I DNG
Sbjct: 2   MPIRILPPILANQIAAGEVVERPSSVVKELVENSLDAGADRVEIDIDKGGAKLIRIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK++  DD   I++ GFRGEAL SI +VS LT  SR  + +  
Sbjct: 62  CGVAKDELVLALSRHATSKVATLDDLEGINSLGFRGEALASISSVSRLTFTSRTAEQSEA 121

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++S +++P A   GT VEV DLFF  PAR  F++SE+ E   I +++RR+A+
Sbjct: 122 WQAQAEGREMSVTIKPAAHPVGTTVEVVDLFFNTPARRKFMRSEKTEFAHIDELVRRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +    +           +    +T      R++ V G  FI++A+ +  + +++ L G+ 
Sbjct: 182 SRFDATLILRHNGKVVRQYKAANTVPEQERRLAAVCGTPFIHHALAVESEHSDVRLWGWL 241

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   IR AY E +P  R+   VL +E+DPRQVDV
Sbjct: 242 ATPEGARPQNDLQYTYVNGRMMRDKLINHAIRQAYDELLPPDRFAAYVLYIELDPRQVDV 301

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    +I +FI Q++  A+ ++G+ST+   +    +      +P+   P 
Sbjct: 302 NVHPAKHEVRFHQARLIHDFIFQALFTALRREGVSTAHQDTPLAETLVELPVSPQIEYPG 361

Query: 358 YATSL-------------------TNTQEKLFLQENRLSTNDLLP----------SDDPT 388
            A                      +        Q     + + +               T
Sbjct: 362 QAPRPEWYGAEHSYRAPAQVREGGSGASRASNYQPPEPPSREAMHGMGALLTTLPIATAT 421

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            +      +   +       A   + Q Y++ +  + L ++    A ER++      +  
Sbjct: 422 EAAPAQSTDTVPSPKQGGCRALTLVEQAYLLIERDNQLALLSLVRA-ERVLLRHWLLETW 480

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
              + +Q LL P    L +   AL+ E +  L R+G++ +  G + + +  +PA+L + +
Sbjct: 481 GQGLAAQPLLLPVSFKLPKNLIALVTEQERLLKRMGLELKSGGRDTMILTRVPALLRQTD 540

Query: 509 IPQLLRDIIDEIIDSSTTYT 528
           + +LL +++  I   S +  
Sbjct: 541 LVRLLPELLQIIEGGSDSDA 560


>gi|238853827|ref|ZP_04644192.1| DNA mismatch repair protein MutL [Lactobacillus gasseri 202-4]
 gi|282852793|ref|ZP_06262135.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus gasseri 224-1]
 gi|238833522|gb|EEQ25794.1| DNA mismatch repair protein MutL [Lactobacillus gasseri 202-4]
 gi|282556535|gb|EFB62155.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus gasseri 224-1]
          Length = 630

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/633 (28%), Positives = 291/633 (45%), Gaps = 49/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA SSR+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSSRIRINFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ +++    N  G 
Sbjct: 63  GIAKDQLNLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVIT-SSDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G +       A   GT + V DLFF  PARL +L+SE+ ET  I D++ R+A+ +
Sbjct: 122 RAIFVGSEKKLQEDAASPKGTKISVSDLFFNTPARLKYLRSERTETLKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT +       K N      +  + I+ + G         L   S +  + G    
Sbjct: 182 PDVSFTLTNNGKILLKTN---GRNDLRQDIANIYGRQLAEKMEVLKGSSPDFKITGLLSD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSSRNFISLLLNGRYIRNYRLTQAIIAGYGSKLRPRRYPIAVVNIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  +R      +   +  SI +A+++     S                         
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALDQNSQIDSGLNNLLTPKKSTNIDQLKFNLNKDV 358

Query: 335 ----------SVLSKKMISSFHQDNAPKTHLPKYATS----LTNTQEKLFLQENRLSTND 380
                       +     +  H+  A    L K        +T T ++   ++ +LS  D
Sbjct: 359 VDTVRPVEFTPQVEADKSAEVHETAASFVSLDKVRNDDKYVITATWDENVDKQVQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A      I   Q  ++Y++++  + L ++DQ AA+ RL +
Sbjct: 419 EEKDLQGKDDSIISSGDEILANSLPELIYLGQT-KSYLVARHDEDLYLIDQVAAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++ +D NS  I+ Q LL+P I+D    +   + E+  +L  LGI  E FG N++ +R  
Sbjct: 478 DQIFRDLNSENISQQGLLSPLILDFSNVDYLKLKENLNNLQELGIFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P  L + ++ + +R I+D  ++ +           I   +    S R  R +  +E   L
Sbjct: 538 PIWL-QPDVEKNVRMILDLYLNQNE-QDFTKLKAQIAGEITLRQSTRR-RNLNPVEAQEL 594

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+ +  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 595 LKNLRNSSDPYQDFEGKIIIIQLSENDLNKMFK 627


>gi|167554135|ref|ZP_02347876.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205321590|gb|EDZ09429.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 618

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 152/555 (27%), Positives = 253/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGTKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F  S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTFNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               +++     +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAVGWPHAQPGYQKLQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|116629084|ref|YP_814256.1| DNA mismatch repair ATPase [Lactobacillus gasseri ATCC 33323]
 gi|122273918|sp|Q045Q4|MUTL_LACGA RecName: Full=DNA mismatch repair protein mutL
 gi|116094666|gb|ABJ59818.1| DNA mismatch repair protein MutL [Lactobacillus gasseri ATCC 33323]
          Length = 630

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/633 (28%), Positives = 291/633 (45%), Gaps = 49/633 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS ++ NQIAAGE+IERP+  +KEL ENSLDA SSR+       G     + DNG 
Sbjct: 3   KIHELSPELTNQIAAGEVIERPASVVKELCENSLDAGSSRIRINFIDAGLKQITVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI+   D  NI T GFRGEAL SI AVSH+ +++    N  G 
Sbjct: 63  GIAKDQLNLAFTRHATSKIATERDLFNISTLGFRGEALASIAAVSHVEVIT-SSDNLGGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G +       A   GT + V DLFF  PARL +L+SE+ ET  I D++ R+A+ +
Sbjct: 122 RAIFVGSEKKLQEDAASPKGTKISVSDLFFNTPARLKYLRSERTETLKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT +       K N      +  + I+ + G         L   S +  + G    
Sbjct: 182 PDVSFTLTNNGKILLKTN---GRNDLRQDIANIYGHQLAEKMEVLKGSSPDFKITGLLSD 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   I   Y   +   RYP+ V+ +E+DP  VDVNV
Sbjct: 239 PNTTRSSRNFISLLLNGRYIRNYRLTQAIIAGYGSKLRPRRYPIAVVNIELDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  +R      +   +  SI +A+++     S                         
Sbjct: 299 HPTKQEVRLSKEQELERLLTTSISEALDQNSQIDSGLNNLLTPKKSTNIDQLKFNLNKDV 358

Query: 335 ----------SVLSKKMISSFHQDNAPKTHLPKYATS----LTNTQEKLFLQENRLSTND 380
                       +     +  H+  A    L K        +T T ++   ++ +LS  D
Sbjct: 359 VDTVRPVEFTPQVEADKSAEVHETAASFVSLDKVRNDDKYVITATWDENVDKQVQLSPFD 418

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                           +E  A      I   Q  ++Y++++  + L ++DQ AA+ RL +
Sbjct: 419 EEKDLQGKDDSIISSGDEILANSLPELIYLGQT-KSYLVARHDEDLYLIDQVAAYRRLAY 477

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +++ +D NS  I+ Q LL+P I+D    +   + E+  +L  LGI  E FG N++ +R  
Sbjct: 478 DQIFRDLNSENISQQGLLSPLILDFSNVDYLKLKENLNNLQELGIFLEDFGQNSLILRTY 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P  L + ++ + +R I+D  ++ +           I   +    S R  R +  +E   L
Sbjct: 538 PIWL-QPDVEKNVRMILDLYLNQNE-QDFTKLKAQIAGEITLRQSTRR-RNLNPVEAQEL 594

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           L+ +  + +  Q   G+   I+L  +D+ K+F 
Sbjct: 595 LKNLRNSSDPYQDFEGKIIIIQLSENDLNKMFK 627


>gi|238797610|ref|ZP_04641107.1| DNA mismatch repair protein mutL [Yersinia mollaretii ATCC 43969]
 gi|238718607|gb|EEQ10426.1| DNA mismatch repair protein mutL [Yersinia mollaretii ATCC 43969]
          Length = 630

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 163/620 (26%), Positives = 277/620 (44%), Gaps = 62/620 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIDRGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGINKEDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    +       R++ + G  F+ +A+ ++ + +++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAATDPSQHERRLASICGPAFLQHALAISWQHDDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNSRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG---ISTSSVLSKKMISSFHQDNAPKTH 354
           NVHPAK  +RF    ++ +FI Q++   + +     ++ +    +     +  +N     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQAATPVLNVNEDGEEIEAPRWQPENRVAAG 360

Query: 355 LPKYATSLTN---TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE------------- 398
           + KYA          E+    E   S  +       T         E             
Sbjct: 361 VNKYAQPEPTKTLPIERNAATERVSSVREHAAPAYSTGQPYQKQQGELYRQLVQPAVMTP 420

Query: 399 ----------------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                                  +  HY  G         Y + +   G+ ++    A  
Sbjct: 421 PAELRAPVVAPPKPRPTPADAPLQGDHYSFGRVLTVFPPCYALIEYKQGIALLALKVAER 480

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
            L   ++        +  Q LL P  + L + E A    H   L  +GI+          
Sbjct: 481 WLKQAQLNPPPE--GLRPQPLLIPLKLTLAKNEAAACQRHQNLLMTMGIELAVEHGRG-T 537

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQS 554
           +R +   L ++N+ +L+ +++  +              + LAT +A Y GS         
Sbjct: 538 LRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWIARYLGS--EHEVWNV 589

Query: 555 IEMNRLLREMEKNPNSSQCN 574
            +  +LL ++E+      C 
Sbjct: 590 SQAIQLLTDVERL-----CP 604


>gi|160902075|ref|YP_001567656.1| DNA mismatch repair protein MutL [Petrotoga mobilis SJ95]
 gi|189030404|sp|A9BJB9|MUTL_PETMO RecName: Full=DNA mismatch repair protein mutL
 gi|160359719|gb|ABX31333.1| DNA mismatch repair protein MutL [Petrotoga mobilis SJ95]
          Length = 621

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 312/631 (49%), Gaps = 48/631 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I+ L+ +++ +IAAGE++  PS  +KEL+ENSLDA++  +   I  GGKS  ++ DNG
Sbjct: 1   MRIKVLNPEVVMKIAAGEVVSGPSSVVKELVENSLDAQADSITVEILDGGKSLIKVDDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  EE+ +++  H TSKI   +D   + TFGFRGEAL SI  VS + + S+PP+   G
Sbjct: 61  IGMEEEELELSILPHTTSKIFSIEDLYKLKTFGFRGEALSSISRVSRMKMTSKPPEKEVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + I G KI   + V  + GT +E+ DLFF IPAR  FLKS+  E   +T++I + A  
Sbjct: 121 TMLEILGGKIIEKKRVNSSNGTKIEIMDLFFNIPARRKFLKSDSAEGRYVTEIIEKFAFT 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              ++ T+       YK    S++ +   +  ++  E   ++ +E+    +   + G   
Sbjct: 181 N-NINLTYIRDHKEIYKF---SSDMDLITKCLKIYPELKRDDLIEIEHNDSLCKISGVIS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R N    + F+N R ++   + S + T Y E +    +P  ++ +EI P  VDVN
Sbjct: 237 QPKVGRNNRTAQHFFVNNRYIKVASLYSVLETGYGEILEKSIHPYGIIFIEIPPDMVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  ++F +  ++ + + + +++++ K    T   ++       ++  +  +    Y
Sbjct: 297 VHPQKLEVKFTDEQMVASLLKKVVRESLKKNTHFTMEFINSNDTIDLNKKTSSFSVQNLY 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ------------- 405
             + ++  +K+   +N  +T+    +D+   + + + ++E +                  
Sbjct: 357 NKNESS--QKVDFSQNPTNTDYFENTDEFFNNSEIEDLQEEQNHFDNSYKLYEPSKTFDF 414

Query: 406 ---------------------LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                                       + + Y++ +  D L++VD HAAHER I+E +R
Sbjct: 415 KGFEYQKNQTFTPVEKINSLEKLRILGIVAERYLVVEGEDKLLLVDFHAAHERYIYEILR 474

Query: 445 QDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           ++      +TS  LLTP II L E    +I+E+ + L +LGIK E      I ++ +P++
Sbjct: 475 ENVYEKGGLTSDLLLTPVIIALDEVRKGIILENKDHLEKLGIKLEE-DEKEIIVKGLPSL 533

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           +   +  +L+ +I D++   S      + ++  LATMAC  ++++        M  LL  
Sbjct: 534 VKIDDAERLIFEIADDLR-ISNFDQQPNILDKNLATMACRAAVKTRD--NPTGMETLLNT 590

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +      C HGRP  I++    ++K FGR
Sbjct: 591 IFE-KKLLTCPHGRPIMIQITFKTLDKYFGR 620


>gi|197247369|ref|YP_002149273.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238690036|sp|B5F385|MUTL_SALA4 RecName: Full=DNA mismatch repair protein mutL
 gi|197211072|gb|ACH48469.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 618

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEDIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGTSGGNGGRQSAGGWPHAQPGYQKPQGEVYRTLLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQQAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|161505138|ref|YP_001572250.1| DNA mismatch repair protein [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189030408|sp|A9MFP2|MUTL_SALAR RecName: Full=DNA mismatch repair protein mutL
 gi|160866485|gb|ABX23108.1| hypothetical protein SARI_03272 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 618

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 156/555 (28%), Positives = 256/555 (46%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVARDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  E +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALAEIQYCYVNGRMMRDRLINHAIRQACEEKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +T  +           +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 357 KYATSLTNTQEK----------------------------LFLQENRLSTNDLLPSDDPT 388
            +A  +  T  +                               Q+ +      L      
Sbjct: 361 HFAEPVVPTAAREPATPRYSGGASGGSGGRQSVGGWSHAQPGYQKQQGEVYRALLQTPAA 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
            S         +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SSTPEPVAPALDGHSQSFGRVLTIVGGDCALLEHGGNIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKASLQKAQPFLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|322615521|gb|EFY12441.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618581|gb|EFY15470.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622006|gb|EFY18856.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627730|gb|EFY24521.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631037|gb|EFY27801.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637744|gb|EFY34445.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642408|gb|EFY39012.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644023|gb|EFY40571.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650491|gb|EFY46899.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653544|gb|EFY49872.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659730|gb|EFY55973.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662059|gb|EFY58275.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666192|gb|EFY62370.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672612|gb|EFY68723.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676042|gb|EFY72113.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680526|gb|EFY76564.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684580|gb|EFY80584.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192895|gb|EFZ78121.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197229|gb|EFZ82369.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201654|gb|EFZ86718.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206168|gb|EFZ91130.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213177|gb|EFZ97979.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215550|gb|EGA00294.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219535|gb|EGA04020.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227838|gb|EGA11992.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229008|gb|EGA13137.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236380|gb|EGA20456.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238715|gb|EGA22767.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241834|gb|EGA25863.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248017|gb|EGA31954.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254652|gb|EGA38463.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258289|gb|EGA41966.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263565|gb|EGA47086.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265839|gb|EGA49335.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270283|gb|EGA53731.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 618

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/555 (27%), Positives = 256/555 (46%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +T  +                    
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 344 ----SFHQDNAPKTHLPKYATSLTN-----------TQEKLFLQENRLSTNDLLPSDDPT 388
                     A ++  P+Y+   +               +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAARESATPRYSGGASGDNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQQAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|166366968|ref|YP_001659241.1| DNA mismatch repair protein [Microcystis aeruginosa NIES-843]
 gi|238687544|sp|B0JS91|MUTL_MICAN RecName: Full=DNA mismatch repair protein mutL
 gi|166089341|dbj|BAG04049.1| DNA mismatch repair protein [Microcystis aeruginosa NIES-843]
          Length = 550

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 157/598 (26%), Positives = 272/598 (45%), Gaps = 66/598 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L + +I+ IAAGE+I+     ++EL+EN++DA + R+   I+       Q++DNG 
Sbjct: 4   PIQVLPQDVIDLIAAGEVIDSLGAVVRELVENAIDAGADRITIDISPQN-WRIQVSDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ +    H TSKI   DD   I + GFRGEAL SI  V+HL + SR   +    
Sbjct: 63  GMSREDLQLCSYAHSTSKIRQRDDLWQITSLGFRGEALHSIAQVAHLRVASRHDDDLGCY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +  ++  + +  GTIV V +LF   P R   L S   +   I  +I   A+ +
Sbjct: 123 CLYNHQGEPGNLETIPIAIGTIVTVENLFGNFPVRRQALPSINKQLKDIQTLIHNFALCH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVE-LNEKSNEITLQGYT 237
           P++++       +  +++         P+ +  +   D  +  ++     +    ++   
Sbjct: 183 PQITWQVFQDHQDWLRISPGKDASQILPQLVKSLHFNDLASLKLDLTTPDAESAQIELVI 242

Query: 238 GIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
           G+P   +R   +   + +NGR V+   +   I  A+A T+P  RYPV  L L ++PR +D
Sbjct: 243 GLPDRISRHQPDWVRIAVNGRMVRSSELEQAIFEAFARTVPKDRYPVCFLHLHLNPRSID 302

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            N HPAK+ I   N    +  II +I KA+                   + ++ P+    
Sbjct: 303 WNRHPAKAEIYLHNLIFWQEQIISAIDKALG-----------------LNPEHIPEKAQN 345

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
           +  + +    E+                      +    + E    +     A AQIHQ 
Sbjct: 346 QRVSQILKAAEE----------------------KSTYTIGEKSPKNRLELKAVAQIHQT 383

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI+++   GL +V+QH AHER+++E++  ++    + +  +L             L    
Sbjct: 384 YIVAEHPHGLWLVEQHIAHERVLYERLEDNWEIVPLDTPIIL-----------NQLTTRQ 432

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L RLG++   FG  + AIR IP +L ++       D  D +++ S    LQ      
Sbjct: 433 IEQLQRLGLEIASFGDRSWAIRSIPVLLKERE------DRADALLELSLGGDLQTAQ--- 483

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AT AC  +IR+G  +   EM  LL + +   N   C HGRP ++ L+ + + + F R
Sbjct: 484 VAT-ACRSAIRNGTALSLKEMQNLLDDWQNTRNPRTCPHGRPIYLSLEETSLARFFRR 540


>gi|204927343|ref|ZP_03218545.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204324008|gb|EDZ09203.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 618

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQQAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|62182805|ref|YP_219222.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224586199|ref|YP_002639998.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|81309508|sp|Q57GM1|MUTL_SALCH RecName: Full=DNA mismatch repair protein mutL
 gi|254766174|sp|C0Q6C7|MUTL_SALPC RecName: Full=DNA mismatch repair protein mutL
 gi|62130438|gb|AAX68141.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224470727|gb|ACN48557.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322717307|gb|EFZ08878.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 618

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               T+      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQTAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPVPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQQAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|159029449|emb|CAO90828.1| mutL [Microcystis aeruginosa PCC 7806]
          Length = 550

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/598 (26%), Positives = 272/598 (45%), Gaps = 66/598 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L + +I+ IAAGE+I+     ++EL+EN++DA + R+   I+       Q++DNG 
Sbjct: 4   PIQVLPQDVIDLIAAGEVIDSLGAVVRELVENAIDAGADRISIDISPQN-WRIQVSDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ +    H TSKI   DD   I + GFRGEAL SI  V+ L + SR   +    
Sbjct: 63  GMSREDLQLCSYAHSTSKIRQRDDLWQITSLGFRGEALHSIAQVARLRVASRHDDDLGCY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +  ++  + +  GTIV V +LF   P R   L S   +   I  +I   A+ +
Sbjct: 123 CLYNHRGEPDNLETIPIAIGTIVTVENLFGNFPVRRQALPSINKQLKDIQTLIHNFALCH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEI-TLQGYT 237
           P +++       +  +++         P+ +  +   D  +  ++L     E+  ++   
Sbjct: 183 PHITWQVFQDHQDWLRISPGKDASQILPQLVKSLHFNDLASLNLDLTTPDAELAQIELVI 242

Query: 238 GIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
           G+P   +R   +   + +NGR V+   +   I  A+A T+P  RYP   L L ++PR +D
Sbjct: 243 GLPDRISRHQPDWVKIAVNGRMVRSSELEQAIFQAFARTVPKDRYPACFLHLHLNPRSID 302

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            N HPAK+ I   N    +  II +I K++                   + ++ P+    
Sbjct: 303 WNRHPAKAEIYLHNLVFWQEQIISAIDKSLG-----------------LNPEHIPEKAQN 345

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
           +  + +    E+                      +    + E    +     A AQIHQ 
Sbjct: 346 QRVSQILKAAEE----------------------KSTYIIGEKSRKNRLELKALAQIHQT 383

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI+++  +GL +V+QH AHER+++E++  ++    + +  +L             L    
Sbjct: 384 YIVAEHPNGLWLVEQHIAHERVLYERLEDNWEIVPLDTPIIL-----------NQLTTRQ 432

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L RLG++   FG  + AIR IP +L ++       D  D +++ S    LQ      
Sbjct: 433 IEQLQRLGLEVAGFGDRSWAIRSIPVLLKERE------DRADALLELSLGGDLQTAQ--- 483

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AT AC  +IR+G  +   EM  LL + +   N   C HGRP ++ L+ + + + F R
Sbjct: 484 VAT-ACRSAIRNGTALSLEEMQNLLDDWQNTRNPRTCPHGRPIYLSLEETSLARFFRR 540


>gi|56416150|ref|YP_153225.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197365076|ref|YP_002144713.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81821550|sp|Q5PL49|MUTL_SALPA RecName: Full=DNA mismatch repair protein mutL
 gi|238690786|sp|B5BKH9|MUTL_SALPK RecName: Full=DNA mismatch repair protein mutL
 gi|56130407|gb|AAV79913.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096553|emb|CAR62163.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 618

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               T+      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTTAREPATPRYSGGASGGNGGRQTAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEAVAPALDGHSQSFGRVLTIVCGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|200389232|ref|ZP_03215844.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199606330|gb|EDZ04875.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 618

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEDIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQSEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|169334039|ref|ZP_02861232.1| hypothetical protein ANASTE_00432 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258756|gb|EDS72722.1| hypothetical protein ANASTE_00432 [Anaerofustis stercorihominis DSM
           17244]
          Length = 659

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 177/658 (26%), Positives = 313/658 (47%), Gaps = 70/658 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KLS+++IN+I+AGE++  P+  IKEL+ENS+DA +  ++  I  GGK+   ++DNG G
Sbjct: 5   IKKLSDELINKISAGEVVVSPASVIKELVENSIDAGADHIKIKIENGGKTKILVSDNGIG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + S+E+ +A  ++ TSKI   D  S+I T GFRGEAL SI  VS + + S+    N G  
Sbjct: 65  IKSDEMGLAFNKNATSKIDSLDKLSSIDTLGFRGEALFSISVVSKVKIRSKYKDENIGTS 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             +   K+ +++ +A+N GT +EV DLF+  PAR   +KS + E     D+I ++AIA P
Sbjct: 125 ATVINGKVQNIKNLALNTGTRIEVEDLFYNTPARRKHMKSAKAEKTASLDIISKLAIANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+  +     +       + N    +S ++G +F++  +E++     +T++G+T  P
Sbjct: 185 SIAFSVYSDNKEVFVTL---GDNNIRNVVSVILGHEFVSKMIEVDYDDEPLTVKGFTLSP 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP-LGRYPVVVLLLEIDPRQVDVNV 299
            +      +    INGR V++  +   I   Y E      +    VL + +     DVN+
Sbjct: 242 NYLDRQNEESIFIINGRYVKNDTLNKVINNIYREQYGLFTKRISYVLYIRLPYNFTDVNI 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINK------------------------KGISTSS 335
           HPAK+ I FRN T+I   I + ++ A+ +                           S+S 
Sbjct: 302 HPAKTSISFRNETLINMLICEGVRSALRESINLNDNVIGERKKKENPLENQIAFEESSSY 361

Query: 336 VLSKKMIS-----------------------SFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
           V+  K IS                       +   D     ++  Y      T       
Sbjct: 362 VVGDKDISIVSYNEEIKIEKKEIGEDNINEEASKSDIINTDYIASYDKYSEPTYFNESSS 421

Query: 373 ENRLSTNDLLPSD----------------DPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
            +  S +D L  D                +    E  + V+ S               + 
Sbjct: 422 TSYTSFDDNLIQDIPIINPTENNLSLNRNEEVPKEQKNIVDRSIFDKIINMHFVGTAFKA 481

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y I ++ + L ++D HA+HER++++K   +F   ++ +Q L++P +++L      + + H
Sbjct: 482 YAIFESGETLYVMDTHASHERVLYDKYLSEFKKHRVKTQILVSPLVLELSVIHKDICLNH 541

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + L  LG + E F  N + IREIP +LS ++  +++ +++  + D+S      +R E +
Sbjct: 542 LKLLKSLGYEIEDFAGNNVIIREIPEMLSLEDTKEVILNLLASLKDTSMLTNEINRNERL 601

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   AC+ ++R    +   E  +LL +++ + N   C H RPT  K+K    EK+F R
Sbjct: 602 IKN-ACHHAVRGHDDISKEEAIKLLNDLKLSDNPFSCPHSRPTISKIKKKYFEKMFQR 658


>gi|229845405|ref|ZP_04465536.1| DNA mismatch repair protein [Haemophilus influenzae 6P18H1]
 gi|229811713|gb|EEP47411.1| DNA mismatch repair protein [Haemophilus influenzae 6P18H1]
          Length = 629

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/620 (26%), Positives = 284/620 (45%), Gaps = 70/620 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEQLNQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQLNWHTEQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVFPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLRWQLALKQIQIEQQPLLIPIVFRLTESQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E      + + ++P+ L  +N+ + + +++    +SS        +  + A + C     
Sbjct: 537 ENQAQLRLTLNKVPSALRTQNLQKCVMEMLTRDENSS------SFLTALCAQLECKT--- 587

Query: 548 SG---RKMQ-SIEMNRLLRE 563
                  +    E  RLL +
Sbjct: 588 FNALADALNLLSETERLLTQ 607


>gi|161617629|ref|YP_001591594.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168244863|ref|ZP_02669795.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194450332|ref|YP_002048402.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|189030409|sp|A9N4Y4|MUTL_SALPB RecName: Full=DNA mismatch repair protein mutL
 gi|238690633|sp|B4TFA4|MUTL_SALHS RecName: Full=DNA mismatch repair protein mutL
 gi|161366993|gb|ABX70761.1| hypothetical protein SPAB_05492 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408636|gb|ACF68855.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336318|gb|EDZ23082.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 618

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEDIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEAVAPALDGHSQSFGRVLTIVCGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|16763178|ref|NP_458795.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144657|ref|NP_807999.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213428674|ref|ZP_03361424.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213621067|ref|ZP_03373850.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648967|ref|ZP_03379020.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852837|ref|ZP_03382369.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289829983|ref|ZP_06547434.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|20455099|sp|Q8Z187|MUTL_SALTI RecName: Full=DNA mismatch repair protein mutL
 gi|25327610|pir||AG1048 DNA mismatch repair protein [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16505486|emb|CAD06836.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140296|gb|AAO71859.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 618

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/555 (27%), Positives = 255/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +T  +                    
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 344 ----SFHQDNAPKTHLPKYATSLTN-----------TQEKLFLQENRLSTNDLLPSDDPT 388
                     A +   P+Y+   +               +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSDGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRTLLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|168464757|ref|ZP_02698660.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632933|gb|EDX51387.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 618

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETALPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|197265698|ref|ZP_03165772.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243953|gb|EDY26573.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 618

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/555 (27%), Positives = 257/555 (46%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +T  +                    
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 344 ----SFHQDNAPKTHLPKYA-----------TSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                     A +   P+Y+           ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSCGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|318607423|emb|CBY28921.1| DNA mismatch repair protein MutL [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 635

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/625 (25%), Positives = 281/625 (44%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA++SR++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDADASRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGIGKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAAPDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS------------------------- 332
           NVHPAK  +RF    ++ +FI Q++   + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQTAAPLLNINEDGEEIEAPRWQPENRVAAG 360

Query: 333 --------TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE----------- 373
                    +  +     SS  +  A +  + +  T   +  E    Q+           
Sbjct: 361 VNKYAQPEPAKTVPVVRTSSPERTVATERSIARERTPTYHAGEPYQKQQGELYRQLVQPA 420

Query: 374 --NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
             N+ +      +     +      E  +  +Y  G         Y + +   G+ +++ 
Sbjct: 421 VVNKPAAVSQPSAASAPVARQISTDEPLQGDNYSFGRVLTVFPPCYALIEYKQGIALLEL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
             A   L   ++     +  +  Q LL P  + L + E      H + L  +GI+     
Sbjct: 481 TVAERWLKQAQLNPP--AEGLRPQPLLIPLKLTLDKNEATACQRHQKLLVTMGIELAVEH 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT ++ + GS    
Sbjct: 539 ARA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWISRHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL ++E+      C 
Sbjct: 590 EVWNVSQAIQLLTDVERL-----CP 609


>gi|168822514|ref|ZP_02834514.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341068|gb|EDZ27832.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088786|emb|CBY98544.1| DNA mismatch repair protein mutL [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 618

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 152/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               T+      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQTAGGWPHAQPGYQKQQGEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|205355117|ref|YP_002228918.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|238690494|sp|B5R9B7|MUTL_SALG2 RecName: Full=DNA mismatch repair protein mutL
 gi|205274898|emb|CAR39965.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326630274|gb|EGE36617.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 618

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|198245330|ref|YP_002218243.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|207859505|ref|YP_002246156.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238690365|sp|B5FRM6|MUTL_SALDC RecName: Full=DNA mismatch repair protein mutL
 gi|238690435|sp|B5R0N7|MUTL_SALEP RecName: Full=DNA mismatch repair protein mutL
 gi|197939846|gb|ACH77179.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206711308|emb|CAR35686.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326626048|gb|EGE32393.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 618

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|15789473|ref|NP_279297.1| DNA mismatch repair protein [Halobacterium sp. NRC-1]
 gi|169235188|ref|YP_001688388.1| DNA mismatch repair protein [Halobacterium salinarum R1]
 gi|20455147|sp|Q9HSM6|MUTL_HALSA RecName: Full=DNA mismatch repair protein mutL
 gi|229486323|sp|B0R2S6|MUTL_HALS3 RecName: Full=DNA mismatch repair protein mutL
 gi|10579807|gb|AAG18777.1| DNA mismatch repair protein [Halobacterium sp. NRC-1]
 gi|167726254|emb|CAP13036.1| DNA mismatch repair protein [Halobacterium salinarum R1]
          Length = 659

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/650 (26%), Positives = 282/650 (43%), Gaps = 66/650 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L +  + +IAAGE++ERP+  +KEL+ENSLDA ++ V+  +  GG     + D+G 
Sbjct: 4   RIRALDDATVARIAAGEVVERPASVVKELVENSLDAGAASVDVSVDAGGTDRIVVADDGR 63

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           GMT +++ MAV++H TSK+ D      + T GFRGEAL +IG+V+ LT+ +RP    +TG
Sbjct: 64  GMTGDDLRMAVRQHTTSKLDDASGLDGVGTLGFRGEALYTIGSVAELTVTTRPRNAGDTG 123

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A+I +      SV P     GT VEV DLF   PAR  +LK    E   +   + R A+A
Sbjct: 124 ARITVDHGDAGSVAPAGHPAGTTVEVTDLFGETPARRKYLKRAATEFGHVNRAVTRYALA 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN---AVELNEKSNEITLQG 235
            P V+ + +      +     +  G+  +    V G +   +           +   + G
Sbjct: 184 NPDVAVSLTHDGREVF---ATTGTGDVQDAALAVYGREVAQSLRTVDADPAADSVERVHG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y   P   R        F+NGR V D  +   +   Y + +   RYP  VL ++     V
Sbjct: 241 YVSDPEVTRSTREYLATFVNGRAVTDAVLREAVLDGYGDQLAPDRYPFAVLFVDC--EGV 298

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAP- 351
           D NVHP K  +RF +   ++  +   ++ A+   G+  +       K   +    +++P 
Sbjct: 299 DANVHPRKLEVRFEDEAGVKAAVEAGVRDALLDAGLVRAGAPRGASKPGDAEISPEHSPT 358

Query: 352 ----------------------------KTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                                        +  P  A       E      +   T +   
Sbjct: 359 DRDAGAAGGGDAAGQSDGNGQRTAASGATSESPASAFETGGGDEAADSAASTDGTRERPG 418

Query: 384 SDDPTYSEDNDPVEE-------------------SEATHYQLGIACAQIHQNYIISQTTD 424
           S   + +   D   E                   SE           Q+H  Y++++  D
Sbjct: 419 SGTESRTGRFDAPAENARLPTGAGGPEADDQDTTSERDSLPDLRVLGQLHDTYVVAEAGD 478

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GLV+VDQHAA ER+ +E+++   +     SQ L+ P  ++L  GE A+       L  LG
Sbjct: 479 GLVLVDQHAADERVHYERLQARVDG---ASQALVAPAELELTAGEAAVFEAALGGLRELG 535

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
             AE  G     +  +PA+L+     +L RD++   +  +    + D  + +LA +AC  
Sbjct: 536 FDAELAG-RTARVTAVPAVLADALDAELARDVLSSFLADADGTPVADAADAVLADLACSP 594

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +I+    +    +  LL  ++   N   C HGRPT +++   ++   F R
Sbjct: 595 AIKGNTSLAEGSVVALLDALDACENPYACPHGRPTIVEVDGDELAARFER 644


>gi|238910517|ref|ZP_04654354.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 618

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGTSGGNGGRQSAGGWPHAQPGYQKQQGEVYRTLLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|156932401|ref|YP_001436317.1| DNA mismatch repair protein [Cronobacter sakazakii ATCC BAA-894]
 gi|166232088|sp|A7MMA2|MUTL_ENTS8 RecName: Full=DNA mismatch repair protein mutL
 gi|156530655|gb|ABU75481.1| hypothetical protein ESA_00180 [Cronobacter sakazakii ATCC BAA-894]
          Length = 635

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/625 (25%), Positives = 270/625 (43%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  AGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTADQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMEVTIKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +      N     R+  + G  F+ +A+ +  +  ++ L+G+ 
Sbjct: 181 ARFDVTINLSHNGKMMRQYRAVQGNAPRERRLGSICGPAFLEHALAIEWQHGDLALRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + + + + P  VL LEIDP QVD
Sbjct: 241 AEPKGTTAALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGIDQQPAYVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  S L++    +       +    
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVVSVLQQQAANPLS-LNEPAEDAPRFQPENRVAAG 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDD------------------------------ 386
           K   +    +E++  +EN         +                                
Sbjct: 360 KNQFADPAPRERVSARENDAPRYSSGGASAGSNAGRSAASNGGWPHATPGYQKQQGALYK 419

Query: 387 -----------------PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                             +  E        +   +  G     + +N  + +    L+++
Sbjct: 420 QLLETPAVTPPPAAPSVTSAREVMPSAPALDGHSHSFGRVLTLVSENVALLERDGKLMLL 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
               A   L   ++          +Q LL P  + +   E  ++      L RLGI+   
Sbjct: 480 ALSVAERYLKQAQLLPH--DEAPCAQPLLIPVRLKISGDERDIMTRAQPQLARLGIEI-V 536

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
              + + IR +P  L ++N+  L+ ++I  +               I   +A +  I   
Sbjct: 537 LDGHHVTIRAVPLPLRQQNLQILIPELIGYLAQQPNADDA-----AIAGWLARHLVI--A 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
           +     +    L E+E+      C 
Sbjct: 590 QPWSVAQAIATLAELERL-----CP 609


>gi|260654147|ref|ZP_05859637.1| DNA mismatch repair protein MutL [Jonquetella anthropi E3_33 E1]
 gi|260631132|gb|EEX49326.1| DNA mismatch repair protein MutL [Jonquetella anthropi E3_33 E1]
          Length = 590

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/612 (27%), Positives = 275/612 (44%), Gaps = 43/612 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I++L +++  +IAAGE++ERP   +KELIENSLDA +  +   +  GGK+   + D+G
Sbjct: 1   MRIQRLPDELARKIAAGEVVERPMSVVKELIENSLDAGAKTIRVELVQGGKTLISVCDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +AV++H TSKIS   D   I + G+RGEAL SI AVS L L SR   + TG
Sbjct: 61  SGISPDDLLLAVEKHATSKISTESDLEAISSLGYRGEALASIAAVSRLELYSRERSSQTG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A +  S  +  +V P+A+  GT V V+DLF+ +PAR  FLKS   E   I+ +++  A+ 
Sbjct: 121 AGLTYSDGR-PAVHPMALPAGTTVTVKDLFYNLPARRKFLKSALAEYRRISRLLQDYALC 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P VSF         +       +G     + Q+ G++      +     +   L     
Sbjct: 180 WPYVSFELVNDGQTSFSSRA---DGTVEGALLQMWGKEPQIEKAQGEVNGSVAELW---- 232

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                 G+  Q  +F+NGR V D  + + I +      P        L L I   +VDVN
Sbjct: 233 RQDTGPGSRFQLILFVNGRRVSDGAVRAAILSH-----PWASRGNWFLKLTIPADEVDVN 287

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL--- 355
           VHPAK+ + FR  + +   + ++ ++          S  +    +++     PK      
Sbjct: 288 VHPAKTEVLFRKGSEVFELVRKTAEEFGRGFTQLPLSGPAAPKETAWRPSEGPKDFFRSI 347

Query: 356 -PKYATSLTNTQEKLFLQENRLSTNDLLPS----------DDPTYSEDNDPVEESEATHY 404
            P +  +  + Q+        +S +D   S          +  T +   +   E      
Sbjct: 348 DPPFRVASPSAQKSSVQLRGVVSLSDPAASIAAEAMGTEAERGTEAGWKNEPAELFPDEK 407

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
              +   Q+ Q Y++ Q    L++VD HAAHER+ FE+  Q   S             + 
Sbjct: 408 PQVLYFGQMSQGYLVFQDEQSLLVVDPHAAHERVNFERFSQGVKSGPAERL----AVHLP 463

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP-QLLRDIIDEIID- 522
           L         E+ +DL  LG   +        + ++P          +LLR  +  + D 
Sbjct: 464 LTPDVRRQAEENKKDLDSLGFGFDE----QFQLAQVPCHAGVSAGAMELLRGALAAVEDG 519

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                 L DR     A  AC  S++   ++   E  +LL ++E     + C HGRPT ++
Sbjct: 520 QDAGRPLIDR----WAMKACKASVKLTTRLTPQEACQLLSDLESCQQPTACPHGRPTVLR 575

Query: 583 LKLSDIEKLFGR 594
           L    ++  FGR
Sbjct: 576 LTAQALDDHFGR 587


>gi|332160020|ref|YP_004296597.1| DNA mismatch repair protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664250|gb|ADZ40894.1| DNA mismatch repair protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 635

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 159/625 (25%), Positives = 281/625 (44%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA++SR++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDADASRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + N  
Sbjct: 61  CGIGKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLMRQYRAAPDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS------------------------- 332
           NVHPAK  +RF    ++ +FI Q++   + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQTAAPLLNINEDGEEIEAPRWQPENRVAAG 360

Query: 333 --------TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE----------- 373
                    +  +     SS  +  A +  + +  T   +  E    Q+           
Sbjct: 361 VNKYAQPEPAKTVPVVRTSSPERTVATERSIARERTPTYHVGEPYQKQQGELYRQLVQPA 420

Query: 374 --NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
             N+ +      +     +      E  +  +Y  G         Y + +   G+ +++ 
Sbjct: 421 VVNKPAAVSQPSAASAPVARQISTDEPLQGDNYSFGRVLTVFPSCYALIEYKQGIALLEL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
             A   L   ++     +  +  Q LL P  + L + E      H + L  +GI+     
Sbjct: 481 TVAERWLKQAQLNPP--AEGLRPQPLLIPLKLTLDKNEATACQRHQKLLVTMGIELAVEH 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT ++ + GS    
Sbjct: 539 ARA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWISRHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL ++E+      C 
Sbjct: 590 EVWNVSQAIQLLTDVERL-----CP 609


>gi|168231394|ref|ZP_02656452.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472742|ref|ZP_03078726.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194459106|gb|EDX47945.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334209|gb|EDZ20973.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 618

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEDIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVTPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|145629068|ref|ZP_01784867.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21]
 gi|145639644|ref|ZP_01795247.1| DNA mismatch repair protein [Haemophilus influenzae PittII]
 gi|144978571|gb|EDJ88294.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21]
 gi|145271201|gb|EDK11115.1| DNA mismatch repair protein [Haemophilus influenzae PittII]
 gi|309750614|gb|ADO80598.1| DNA mismatch repair protein MutL [Haemophilus influenzae R2866]
          Length = 629

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/620 (26%), Positives = 284/620 (45%), Gaps = 70/620 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKITDLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEELSQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +  +  ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENREENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISDTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E      + + ++P+ L  +N+ + +  ++    +SS        +  + A + C     
Sbjct: 537 ENQAQLRLTLNKVPSALRTQNLQKCVMAMLTRDENSS------SFLTALCAQLECKT--- 587

Query: 548 SG---RKMQ-SIEMNRLLRE 563
                  +    E  RLL +
Sbjct: 588 FNALADALNLLSETERLLTQ 607


>gi|145300256|ref|YP_001143097.1| DNA mismatch repair protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166231102|sp|A4SR27|MUTL_AERS4 RecName: Full=DNA mismatch repair protein mutL
 gi|142853028|gb|ABO91349.1| DNA mismatch repair protein MutL [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 627

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 168/569 (29%), Positives = 273/569 (47%), Gaps = 36/569 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + NQIAAGE++ERPS  +KEL+ENSLDA + RVE  I  GG    +I DNG
Sbjct: 1   MPIRILPPILANQIAAGEVVERPSSVVKELVENSLDAGADRVEIDIDKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK++  DD   I + GFRGEAL SI +VS LT  SR    +  
Sbjct: 61  CGVAKDELVLALSRHATSKVATLDDLEGICSLGFRGEALASISSVSRLTFTSRTQDQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++ +V+P A   GT VEV DLFF  PAR  F++SE+ E   I +++RR+A+
Sbjct: 121 WQAQAEGREMNVTVKPAAHPVGTTVEVVDLFFNTPARRKFMRSEKTEFAHIDELVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +    +T      R++ V G  F+++A+ +  + +++ L G+ 
Sbjct: 181 SRFDVTLILRHNGKVMRQYKAANTVAEQERRLAAVCGTPFMHHALAVESEHSDVRLWGWL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R   +  Y ++NGR ++DK I   IR AY E +P  R+   VL +E+DP QVDV
Sbjct: 241 ALPEGARPQNDLQYTYVNGRMMRDKLINHAIRQAYDELLPTDRFAAYVLYIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------------SVLSKKMI 342
           NVHPAK  +RF    +I +FI Q++  A+ ++G+S +               S   +   
Sbjct: 301 NVHPAKHEVRFHQARLIHDFIFQALFTALRREGVSAAHQEEPLAETLVELPVSGQIEYPG 360

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQE-----KLFLQENRLSTNDLLPS------------D 385
            +   +     H  +   S    +E         Q     + + + S             
Sbjct: 361 QAPRPEWYGAEHSYRAPASTNEVREGSAARAGNYQPPEPPSREAMRSMGALLTTLPGAGP 420

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
               S     V  + A           + +   +    DG + +      ERL+      
Sbjct: 421 ASAASATAAMVPSAAAQTAPGVWQALTLVEQAYLLLVRDGQLALLSLVRAERLLLRNWLL 480

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
           +     + +Q LL P    L +   AL+   +  L R+G++ +  G + + +  +PA+L 
Sbjct: 481 EAWGQGLAAQPLLLPVSFKLPKNLIALVEAQERLLKRMGLELKSGGRDTMILTRVPALLR 540

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           + ++ +LL +++  II+S +        E
Sbjct: 541 QTDLVRLLPELLQ-IIESGSDSDASQLAE 568


>gi|295425863|ref|ZP_06818543.1| DNA mismatch repair protein HexB [Lactobacillus amylolyticus DSM
           11664]
 gi|295064466|gb|EFG55394.1| DNA mismatch repair protein HexB [Lactobacillus amylolyticus DSM
           11664]
          Length = 631

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/629 (26%), Positives = 289/629 (45%), Gaps = 44/629 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+ENS+DA +SR+       G     + DNG 
Sbjct: 7   KIHELSEALTNQIAAGEVIERPASVVKELVENSIDAGASRIRIDFMDAGLKQIVVQDNGT 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKI++  D  N+ T GFRGEAL SI AV+H+ +++    +  G 
Sbjct: 67  GIARDQIDLAFTRHATSKINNERDLFNVSTLGFRGEALASISAVAHVEMIT-AAADEIGT 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    G    +    A   GT + V+DLF   PARL +L+S + E   I D++ R+++ Y
Sbjct: 126 KAVFVGGNKKTEEDAAARKGTKITVKDLFLNTPARLKYLRSPRTEMMKIVDIVNRISLGY 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT S        +     NGN  + ++ V G       +      ++  + G    
Sbjct: 186 PQISFTLSNAGK---VLLRTPGNGNLAQTVANVYGRHIAEKMIPFKNADSDFQVSGLMSR 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   N   + +NGR +++  + + I   Y   +    YPVVV+ +++DP  VDVNV
Sbjct: 243 PELTRSTRNFISILLNGRYIRNFRLNTAIMEGYGSKLTARHYPVVVVAIKVDPLLVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS----------VLSKKMISSFHQDN 349
           HP K  +R      +   I  +I   +      + +           L  ++  + +Q+ 
Sbjct: 303 HPTKQEVRLSKEKELSRLITAAISDNLISHPEQSDAFANLKTNRQETLVDQLKFNLNQNV 362

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP-----TYSEDNDPVEESEATHY 404
              T  P        T  +L  ++ +    DL    +      T +  ++  ++++ T +
Sbjct: 363 VNTTRQPTPEIHEKVTPTELTPKKAKTKYVDLSIPREDDRYVITTTWADNIAKQTQLTPF 422

Query: 405 QLGIACAQIH--------------------QNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
             G +  ++                     + YII++    L ++DQ AA  RL +EK+ 
Sbjct: 423 GKGKSDKEVISTGDETLATSLPELQYLGQTKTYIIAEDNGDLFLIDQLAARRRLTYEKIY 482

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
           Q     KI  Q LLTP +++    +   I    +++ ++GI  E FG ++  +R  P  +
Sbjct: 483 QTLLEKKIVQQGLLTPLVLEFGNLDFLQIKSKIDEIKKIGIFLEDFGQDSFIMRSYPTWI 542

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              ++   +R I+D  +  +   T       I A  A    I     + + E   LL ++
Sbjct: 543 -HGDVEGSVRKILDSYLTFAH-QTETTLFAKIAALQA-RKEITGHVDLSAGENVSLLADL 599

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            K+ +      G+   +++  +D+ K+F 
Sbjct: 600 RKSSDPYHDADGKVVLVRISQNDLRKMFK 628


>gi|117617892|ref|YP_855465.1| DNA mismatch repair protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|166231101|sp|A0KGR9|MUTL_AERHH RecName: Full=DNA mismatch repair protein mutL
 gi|117559299|gb|ABK36247.1| DNA mismatch repair protein MutL [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 622

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/559 (30%), Positives = 282/559 (50%), Gaps = 32/559 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + NQIAAGE++ERPS  +KEL+ENSLDA + RVE  I  GG    +I DNG
Sbjct: 1   MPIRILPPILANQIAAGEVVERPSSVVKELVENSLDAGADRVEIDIDKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK++  DD   I++ GFRGEAL SI +VS LT  SR  + +  
Sbjct: 61  SGVAKDELVLALSRHATSKVATLDDLEGINSLGFRGEALASISSVSRLTFTSRTAEQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++S +++P A   GT VEV DLFF  PAR  F++SE+ E   I +++RR+A+
Sbjct: 121 WQAQAEGREMSVTIKPAAHPVGTTVEVVDLFFNTPARRKFMRSEKTEFAHIDELVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +    +T      R++ V G  F++ A+ +  + +++ L G+ 
Sbjct: 181 SRFDVTLILRHNGKVVRQYKAANTVAEQERRLAAVCGSPFMHYALAVESEHSDVRLWGWL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   IR AY E +P  R+   VL +E+DPRQVDV
Sbjct: 241 ATPEGARPQNDLQYTYVNGRMMRDKLINHAIRQAYDELLPADRFAAYVLYIELDPRQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------------------ 339
           NVHPAK  +RF    +I +FI Q++  A+ ++G ++   L++                  
Sbjct: 301 NVHPAKHEVRFHQARLIHDFIFQALFTALRQQGAASDEPLAETLVELPVSAPIEYPGQAP 360

Query: 340 --KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
             +   + H   AP   + + +++      +     +R +   +        +    P+ 
Sbjct: 361 RAEWYGAEHNYRAPAREVREGSSTGRAGNYQPPEPPSREAMRGMGSLLTTLPAVQGTPLA 420

Query: 398 ESE--------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           E+E                A   + Q Y++ +  + L ++    A ERL+      +   
Sbjct: 421 EAETAPVAAAVPAKAGAWRALTLVEQAYLLLERDNRLALLSLVRA-ERLLLRHWLLETWG 479

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + +Q LL P    L +   AL+ + D  L R+G++ +  G + + +  +PA+L + ++
Sbjct: 480 QGLAAQPLLLPVSFKLPKNLVALVEQQDRLLKRMGLELKSGGRDTMILTRVPALLRQTDL 539

Query: 510 PQLLRDIIDEIIDSSTTYT 528
            +LL +++  I   S +  
Sbjct: 540 VRLLPELLQLIESGSDSDA 558


>gi|260770597|ref|ZP_05879529.1| DNA mismatch repair protein MutL [Vibrio furnissii CIP 102972]
 gi|260614427|gb|EEX39614.1| DNA mismatch repair protein MutL [Vibrio furnissii CIP 102972]
          Length = 649

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 158/577 (27%), Positives = 268/577 (46%), Gaps = 60/577 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIDKDELGLALSRHATSKIHTLDDLEAIISLGFRGEALASISSVSRLTLTSRTATQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVQLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+F          +     T     +RI+ V G  F+ N +++      + L G+ 
Sbjct: 181 SRFDVTFNLRHNGKLVRQYRAAKTEIQLEKRIAAVCGSAFVRNMLKIELAHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------------------ 339
           NVHPAK  +RF    ++ +FI Q++  A+ +     +   ++                  
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALAESQHIDAPTHNESAFHYHDEPEQTSAISER 360

Query: 340 ---------------------------------KMISSFHQDNAPKTHLPKYATSLTNTQ 366
                                            K  +      A +    +  ++ + +Q
Sbjct: 361 VTQAVESTPAYPGRSDYERPAREATRDQVREASKHSAWVESSQAKRKPAQERVSAPSPSQ 420

Query: 367 EKLFLQENRLSTNDLL----PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            ++   +  + T D+         P+   ++ P+E    T  QLG A A +   Y++  T
Sbjct: 421 AEVRAYQALMQTPDVASPTPDEHHPSTPLEHTPLEHETFTVQQLGKAIAVVRGCYLLMNT 480

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
             G V++    A    +  ++  +     + SQ LL P  + +   E   + +    L +
Sbjct: 481 PQGCVLLSLRVAAWLRVRGQL--NAQHEPLKSQPLLVPLSLKMSASEANALEQSQPLLTQ 538

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           LG++ +   P ++ +  +P  L ++N+  L+ D++  
Sbjct: 539 LGLELKPRHPGSLMVMGVPQPLRQQNLQLLIPDLLSY 575


>gi|261867646|ref|YP_003255568.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412978|gb|ACX82349.1| DNA mismatch repair protein MutL [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 616

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/579 (29%), Positives = 286/579 (49%), Gaps = 49/579 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++ NQIAAGE++ERP+  +KEL+ENSLDA + +++  I  GG    +I DNG
Sbjct: 1   MTIRILSPQLANQIAAGEVVERPASVVKELVENSLDAGADKIQIDIENGGAGLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  IGIAKEELALALARHATSKIADLADLEAILSLGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKISS-VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + + ++P +   GT VEV +LFF  PAR  FL+SE+ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMKTIIQPASHPVGTTVEVANLFFNTPARRKFLRSEKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++FT +       +     T+    +R++ + G+DFI NA++++ K +++ L G+ 
Sbjct: 181 AKFHINFTLTHNGKVLRQYKSAVTHEQKLKRVAAICGQDFIQNALQIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P FNR   +  Y ++NGR V+DK I   IR AYA+ +   +YP  VL ++++P +VDV
Sbjct: 241 ALPQFNRPQNDLNYCYVNGRMVRDKTITHAIRQAYADYLTTEQYPAFVLFIDLNPNEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-TSSVLSKKMISSFHQDNAPKTHLP 356
           NVHP K  +RF+   ++ +FI Q I  A+  + I  T S +   +        AP    P
Sbjct: 301 NVHPTKHEVRFQQSRLVHDFITQGISNALASEQIHLTPSSMENAVEEPAGVWEAPTYTKP 360

Query: 357 KYATSLTN-------------------------TQEKLFLQENR---------LSTNDLL 382
             + +  N                              F +EN          L+ +  L
Sbjct: 361 NRSAAGQNIFAPTTGYSATAYAEKKNDGTQKHRQSSPHFYRENAHREQITQNVLNAHKTL 420

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            +      +    + E    +     A A I+   ++ Q      ++         +   
Sbjct: 421 WTALKNQPQTEMTIAEVSKPNTDFLHALALINDEALLLQQGQHFYLLSLARLQHLKLELN 480

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGPNAIAIREIP 501
           +          SQ LL P I  L   +    ++      ++G    E    + I ++++ 
Sbjct: 481 LTLAPT-----SQPLLIPIIFRLSNDQWQAWLQQKTFFEQIGFTFTEEATQHKITLQKVS 535

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
           A L ++N+ Q++  +++  I++     L + +  +LA++
Sbjct: 536 AHLRQQNLQQIIISLLNHSIEN-----LPEFLTALLASL 569


>gi|238757517|ref|ZP_04618702.1| DNA mismatch repair protein mutL [Yersinia aldovae ATCC 35236]
 gi|238704279|gb|EEP96811.1| DNA mismatch repair protein mutL [Yersinia aldovae ATCC 35236]
          Length = 635

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/625 (25%), Positives = 272/625 (43%), Gaps = 67/625 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++  ++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR    N  
Sbjct: 61  CGISKADLSLALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTADQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +            R++ + G  F+ +A+ ++ +  ++T++G+ 
Sbjct: 181 ARFDVAINLSHNGKLVRQYRAAPDPSQHERRLASICGPAFLQHALAISWQHGDLTIRGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R      Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASRTLTEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF    ++ +FI Q++   + +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTTVLQQTATPVLSINDDGEEIEAPRWQPENRIAAG 360

Query: 331 -------------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
                               +  +  S++   S        T            Q +L+ 
Sbjct: 361 VNKYAQPEPVKANPAEYVVPAARAESSERTTGSPRAAREHVTPAYHAGQPYQKQQGELYR 420

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
           Q  + +  D                E  +   Y  G     I   Y + +    + ++  
Sbjct: 421 QLVQPAAVDTPIDVITAPRHRLPADEPLQGDSYSFGRVLTIIASCYALIEYQQSVALLAL 480

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
             A   L   ++        +  Q LL P  + L + E A  + H   L  +GI+     
Sbjct: 481 PVAERGLKQAQLTPPPQ--GLRPQPLLIPLKLTLDKHEAAAGLRHQNLLVTMGIELAVEH 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSG 549
             A  +R +   L ++N+ +L+ +++  +              + LAT +A + GS    
Sbjct: 539 SRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DALATWIARHLGS--EH 589

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCN 574
                 +  +LL ++E+      C 
Sbjct: 590 EVWNVSQAIQLLTDVERL-----CP 609


>gi|167995169|ref|ZP_02576259.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205327102|gb|EDZ13866.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261249450|emb|CBG27315.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996690|gb|ACY91575.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160848|emb|CBW20379.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915457|dbj|BAJ39431.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222675|gb|EFX47747.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132697|gb|ADX20127.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332991170|gb|AEF10153.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 618

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/555 (27%), Positives = 250/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETALPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L      
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRTLLQTPTA 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPESVTPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|16767605|ref|NP_463220.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|127553|sp|P14161|MUTL_SALTY RecName: Full=DNA mismatch repair protein mutL
 gi|154186|gb|AAA27166.1| mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|16422919|gb|AAL23179.1| enzyme in methyl-directed mismatch repair [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
          Length = 618

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 154/555 (27%), Positives = 252/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +          Q+N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETALPLEEIAPAPRHVQENRIAAGRN 360

Query: 357 KYATSLTNTQEK----------------------------LFLQENRLSTNDLLPSDDPT 388
            +A     T  +                               Q+ +      L      
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRTLLQTPTA 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPESVTPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|168239735|ref|ZP_02664793.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734797|ref|YP_002117300.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|238693674|sp|B4TSF0|MUTL_SALSV RecName: Full=DNA mismatch repair protein mutL
 gi|194710299|gb|ACF89520.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197287601|gb|EDY26993.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 618

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 150/555 (27%), Positives = 250/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEDIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRTLLQTPAT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E   + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKVALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|219944613|gb|ACL55048.1| MutL [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 618

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 250/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y  +NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCHVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEDIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               ++      +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEAVAPALDGHSQSFGRVLTIVCGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|148827220|ref|YP_001291973.1| DNA mismatch repair protein [Haemophilus influenzae PittGG]
 gi|166232091|sp|A5UFN4|MUTL_HAEIG RecName: Full=DNA mismatch repair protein mutL
 gi|148718462|gb|ABQ99589.1| DNA mismatch repair protein [Haemophilus influenzae PittGG]
          Length = 629

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/620 (26%), Positives = 283/620 (45%), Gaps = 70/620 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEELNQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 AKPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVFPNHVSTGYRDYRSDAPSKIEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISDTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ ++  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDNFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E      + + ++P+ L  +N+ + +  ++    +SS        +  + A + C     
Sbjct: 537 ENQAQLRLTLNKVPSALRTQNLQKCVMAMLTRDENSS------SFLTALCAQLECKT--- 587

Query: 548 SG---RKMQ-SIEMNRLLRE 563
                  +    E  RLL +
Sbjct: 588 FNTLADALNLLSETERLLTQ 607


>gi|258649208|ref|ZP_05736677.1| DNA mismatch repair protein MutL [Prevotella tannerae ATCC 51259]
 gi|260850473|gb|EEX70342.1| DNA mismatch repair protein MutL [Prevotella tannerae ATCC 51259]
          Length = 612

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/597 (26%), Positives = 272/597 (45%), Gaps = 29/597 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RPS  +KELIENS+DAESS ++  I   GKS  QI DNG G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPSSIVKELIENSIDAESSLIQVFITDAGKSCVQIVDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKIS   D   + T GFRGEAL SI AV+ + L +R  +   G  
Sbjct: 65  MSEMDARLSFERHATSKISTPSDLFALKTMGFRGEALASIAAVAQVELKTRTEEEELGIC 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G +I S   VA   G    VR++FF IPAR  FLKS Q E   I     R+A+A P
Sbjct: 125 VDVEGGRIKSQSVVACPVGANFSVRNIFFNIPARRKFLKSNQTEMGSIMSEFERLALANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F      S    +      GNF +RI  + G       + +  K+  ++++G+ G P
Sbjct: 185 SVAFKLYNNNSLLIDLPA----GNFRQRIKALFGSKLDEQLMSIEVKTELVSIKGFVGSP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +       + F+NGR ++  +    I+TA+   IP        + LE+DP ++DVN+H
Sbjct: 241 NSS-KKKCHQFFFVNGRYMRHNYFAKAIQTAFERLIPENEQIPYFVALEVDPSRIDVNIH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---SSVLSKKMISSFHQDN------AP 351
           P K+ I+F++   I   ++  +++A+ K            +K ++  F   +       P
Sbjct: 300 PTKTEIKFQDEGAIWQVVLACVREALGKYAAVPLIEFDTNNKPVMPVFEPIDKAQVLSPP 359

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
           + H+ +        +     ++   +    L     +   +   + E ++T      +  
Sbjct: 360 QVHINQNFNPFNKERSHQNTRQVESNWERDLDRLFQSRRSELSALTEEQSTLLAKSPSLE 419

Query: 412 QIH------------QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                            +I+     GL++V+QH A  R++++   +   +    SQ +L 
Sbjct: 420 GFDVDDLSDKYMQLLGRFILLPVKSGLMLVEQHRADVRILYDYYLRQIKNQAGPSQGILF 479

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P+ I     E   + +    L  +G    +       +R IP+     +I  LL +I+ E
Sbjct: 480 PQTIHFSPTEKVYLEKILLPLTDIGFDLTQQTNGEYEVRGIPSGTEGLDISDLLLNIVQE 539

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +        + +   ++  T+A   +I  G  + + EM  L++ +      +    G
Sbjct: 540 LKQ-GNIEAINEIHHHVALTLASKSAIPIGEALSNEEMGNLMQRLFACECPNYGPDG 595


>gi|269836849|ref|YP_003319077.1| DNA mismatch repair protein MutL [Sphaerobacter thermophilus DSM
           20745]
 gi|269786112|gb|ACZ38255.1| DNA mismatch repair protein MutL [Sphaerobacter thermophilus DSM
           20745]
          Length = 578

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/606 (26%), Positives = 264/606 (43%), Gaps = 54/606 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L   ++ +IAAGE+IERP+  +KEL+EN+LDA + ++   + GGG +  +++D+G 
Sbjct: 11  PIRVLPAPVVARIAAGEVIERPASVVKELVENALDAGARQIRIDVQGGGLALIRVSDDGC 70

Query: 62  GMTSEEIPMAVQRHCTSKIS-DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+ ++++P+A  RH TSK+  DD   + T GFRGEALPSI  V+ LTL+S    +  G +
Sbjct: 71  GIPADQMPLACARHATSKLPDDDLEQVRTLGFRGEALPSIATVAELTLVSATDNSGVGHR 130

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G  ++   P   + GT V VR LF  +PARL      Q E   I+  +RR+A+A P
Sbjct: 131 LVLRGGSVAVSEPAPRSRGTTVTVRHLFQNVPARLASCGRPQTEIREISQTVRRLALAAP 190

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE-LNEKSNEITLQGYTGI 239
            V  +                 G+  E +  V G       +     +     + G    
Sbjct: 191 HVRMSLYIDGRLTLH---TDGGGDLGEALVAVYGAALSGRLIPLGPIEVASARIAGVVAG 247

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R    Q    +NGR VQ + +L+ + TAY   +P GR+PV+ + +++ P  VD+N+
Sbjct: 248 PEVTRPGRGQITFIVNGRAVQPRGLLAQVETAYRPVLPRGRHPVLAVTIDVPPGLVDINI 307

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R R    I   I + I+ A+ +                      P   +   A
Sbjct: 308 HPAKLEVRLRAEREIGAAIGEMIRDALGR--------------QPLPLRAEPAVGVAALA 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +L +  E                          D                 Q+    ++
Sbjct: 354 PTLAHLAEA---------------------RPVWDDDAPIITPGLPPLRLIDQVQGRLLL 392

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  DGL +VDQH AHER+IFE +             L  P +++L   + A      +D
Sbjct: 393 LEGDDGLYLVDQHRAHERVIFEHLVARHGDGGPEPVALPEPLLLELRPAQVARFARRLDD 452

Query: 480 LHRLGIKAERFGPNAIAIREIPAIL------------SKKNIPQLLRDIIDEIIDSSTTY 527
           L  LG + E FG     +R  PA+                    L+ +++   +  S   
Sbjct: 453 LAALGFQCESFGGRMFLLRAAPALPGVFTTPGDTALAGVGETDGLVAELVA--LADSEPG 510

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
             +   + +L  +AC  ++R GR ++   M  L+  +      + C HG P  I +  + 
Sbjct: 511 EGEGWRQELLVRLACRSAVRRGRHLERPAMRALVEALGHTRAPAVCPHGSPLLIHVSDTL 570

Query: 588 IEKLFG 593
           +E+ FG
Sbjct: 571 LERQFG 576


>gi|145630634|ref|ZP_01786413.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
 gi|144983760|gb|EDJ91210.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
          Length = 629

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/620 (26%), Positives = 283/620 (45%), Gaps = 70/620 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKITDLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEELSQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPKYYEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTEQRDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E      + + ++P+ L  +N+ + +  ++    +SS        +  + A + C     
Sbjct: 537 ENQAQLRLTLNKVPSALRTQNLQKCVMAMLTRDENSS------SFLTALCAQLECKT--- 587

Query: 548 SG---RKMQ-SIEMNRLLRE 563
                  +    E  RLL +
Sbjct: 588 FNALADALNLLSETERLLTQ 607


>gi|168263289|ref|ZP_02685262.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348021|gb|EDZ34652.1| DNA mismatch repair protein MutL [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 618

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/555 (27%), Positives = 252/555 (45%), Gaps = 35/555 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------------------- 328
           VNVHPAK  +RF    ++ +FI Q +   + +                            
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                +   + +  ++               +++     +   Q+ +      L     T
Sbjct: 361 HFAVPAEPTAAREPATPRYSGGASGGNGGRQSAVGWPHAQPGYQKLQGEVYRALLQTPTT 420

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      +      G     +  +  + +    + ++    A   L   ++     
Sbjct: 421 SPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--TPG 478

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
            + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L ++N
Sbjct: 479 QSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQQN 537

Query: 509 IPQLLRDIIDEIIDS 523
           +  L+ ++I  +   
Sbjct: 538 LQILIPELIGYLAQQ 552


>gi|300721486|ref|YP_003710761.1| methyl-directed mismatch repair protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297627978|emb|CBJ88527.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Xenorhabdus
           nematophila ATCC 19061]
          Length = 640

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/629 (26%), Positives = 278/629 (44%), Gaps = 70/629 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MAIKILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  CGISQQDLTLALARHATSKIASLDDLEAIMSMGFRGEALASISSVSRLTLTSRPENQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +    +P A   GT VEV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQSYAEGRDMEITVKPAAHPVGTTVEVLDLFYNTPARRKFLRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++   +       +         +  R++ + G  F+  A+ L+ + + + ++G+ 
Sbjct: 181 ARLDIAINLNHNGKLVRQYRPAKEESQYERRLAAICGTAFVQQALALSWQHDALLIKGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P      ++  Y ++NGR ++D+ I   IR AY + I   + P  VL LEIDP QVDV
Sbjct: 241 ADPMSTTTGSDIQYCYVNGRMMRDRLINHAIRQAYQDLIQGEQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL-SKKMISSFHQDNAP----- 351
           NVHPAK  +RF    ++ +FI Q +   + ++       L  ++    +  +N P     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGVAAVLKQRSKGDELALGCQEPTEHWVPENRPSAGEN 360

Query: 352 -----------------------KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                  +   P     L      L   E+       L      
Sbjct: 361 HFLRKKIVPADSVSARHHDNDNIRQREPDKRQPLGREAPPLHHGESYQKKQGDLYQKLMQ 420

Query: 389 YSEDNDPV----------------------EESEATHYQLGIACAQIHQNYIISQTTDGL 426
           ++ +                            S   H+  G   +     Y + +++ G+
Sbjct: 421 FAPEEKQPLFPERAASASSSSVQSSLEKNSNASSGYHHSFGKILSIYAGCYALLESSIGI 480

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
            ++    A   L   ++        + SQ LL P  + L + E   + ++ E L   GI+
Sbjct: 481 GLLSLPVAERWLKQAQL--TPGEQGLKSQPLLIPLKLALNQAEMGSLKQNSELLKTFGIE 538

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY-GS 545
                   + I  +   L ++N+P+LL +++  + + S         E I   ++ + GS
Sbjct: 539 -STSANGKVTIHAVSLPLRQQNLPKLLPELLGYLGEQSVVSA-----EQIAIWLSRHLGS 592

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
                     +  +LL ++E+      C 
Sbjct: 593 --EHETWNVAQAVQLLADVERL-----CP 614


>gi|68248618|ref|YP_247730.1| DNA mismatch repair protein [Haemophilus influenzae 86-028NP]
 gi|81336955|sp|Q4QPH7|MUTL_HAEI8 RecName: Full=DNA mismatch repair protein mutL
 gi|68056817|gb|AAX87070.1| DNA mismatch repair protein MutL [Haemophilus influenzae 86-028NP]
          Length = 629

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/570 (27%), Positives = 268/570 (47%), Gaps = 57/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPKYYEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +              + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISDTAQQNISDTAKIISTEIIECSSHLRTLSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ ++  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALQQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDNFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           E      + + ++P +L  +N+ + L  ++
Sbjct: 537 ENQAQLRLTLNKVPNVLRTQNLQKCLMAML 566


>gi|260582015|ref|ZP_05849810.1| DNA mismatch repair protein [Haemophilus influenzae NT127]
 gi|260094905|gb|EEW78798.1| DNA mismatch repair protein [Haemophilus influenzae NT127]
          Length = 633

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/624 (26%), Positives = 280/624 (44%), Gaps = 74/624 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKITDLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +    S      +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPASDLNQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQINWHTEQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPKYHEKPQQNQPHFFDGRGLSSHVTADYRDYRENYKKDTPSKTEQQ 420

Query: 380 ---------------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          D+  +     S+    +              + I    ++ Q   
Sbjct: 421 LYGELLRTLPPTEQKDISNTAQQNISDTAKIIPTEIIECSSHLRTLSLIENRVLLLQQNQ 480

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           G  ++      E+L   + +       I  Q LL P +  L E +     ++ +D  ++G
Sbjct: 481 GFFLLSL----EKLQRLQWQLALQQIHIEQQPLLIPIVFRLTESQFQKWQQYSDDFKKIG 536

Query: 485 IK-AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
            +  E      + +  +P+IL  +N+ + +  ++               +  + A + C 
Sbjct: 537 FEFIENQAQLRLTLNRVPSILRTQNLQKCVMTMLT------KNENSSPFLTALCAQLECK 590

Query: 544 GSIRSG---RKMQ-SIEMNRLLRE 563
                      +    E  RLL +
Sbjct: 591 T---FNALADALNLLSETERLLTQ 611


>gi|145633371|ref|ZP_01789101.1| DNA mismatch repair protein [Haemophilus influenzae 3655]
 gi|145635252|ref|ZP_01790956.1| DNA mismatch repair protein [Haemophilus influenzae PittAA]
 gi|144985934|gb|EDJ92536.1| DNA mismatch repair protein [Haemophilus influenzae 3655]
 gi|145267531|gb|EDK07531.1| DNA mismatch repair protein [Haemophilus influenzae PittAA]
          Length = 629

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 270/570 (47%), Gaps = 57/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTEQRDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           E      + + ++P++L  +N+ + +  ++
Sbjct: 537 ENQAQLRLTLNKVPSVLRTQNLQKCVMAML 566


>gi|288574976|ref|ZP_06393333.1| DNA mismatch repair protein MutL [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570717|gb|EFC92274.1| DNA mismatch repair protein MutL [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 585

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/608 (28%), Positives = 280/608 (46%), Gaps = 38/608 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L + +  +IAAGE++ERP   +KEL+ENSLDA SSR+   +  GG+    + D+G
Sbjct: 1   MTIHRLPQTVAMRIAAGEVVERPISVVKELMENSLDAGSSRISVSVIQGGRLSIVVEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+AV+RH TSKIS  +D   I T G+RGEAL S+ AVS L + SR  Q ++G
Sbjct: 61  CGIPREDLPLAVERHATSKISSIEDLEAIATLGYRGEALASVAAVSRLDIRSRTNQEDSG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + + G     V       GT V+V DLFF +PAR  FLKS + E   IT V++  ++A
Sbjct: 121 VWLRMEGGGPPKVDEQNCRIGTRVQVDDLFFNLPARRKFLKSARAELRRITKVVQEFSVA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG--EDFINNAVELNEKSNEITLQGY 236
           YP V+F  S+     Y+        +  + +  + G   + + ++      S  +  Q  
Sbjct: 181 YPSVAFILSSDGKKIYETQ---GGRDRVDVLKSLWGDEPEILTSSGARGPYSVTLWWQ-- 235

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                 ++ +      F+NGR V+D  I + I +   ET P G + V    +E  P +VD
Sbjct: 236 ----RISKVSRVSVMAFVNGRRVEDGTIRAAISSG--ETHPGGNWAV---WVETPPDEVD 286

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---KGISTSSVLSKKMISSFHQDNAPKT 353
           VNVHPAK+ + FR+   +   +         +      S   + +     ++    APK 
Sbjct: 287 VNVHPAKTEVLFRHGGDLFAAVRDGATSMKGRSLPDWESRQLLRTGSPAGTYVPKYAPKG 346

Query: 354 HL-----PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                    + +S  +  E         S      S  P   + +DPVE  E  H     
Sbjct: 347 ESLFRGVDPFPSSSGSGGETRLRSFKIPSAPAAESSPLPVREQISDPVEVDEGPHI---S 403

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q+   Y++      +V++D HAAHER+ FE++++  +S      T      + L   
Sbjct: 404 YLGQLDSGYLVFDDGGDMVLMDPHAAHERINFERIKKRCSS---EYGTQHLATPVHLPPT 460

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI--LSKKNIPQLLRDIIDEIIDSSTT 526
             + +   +E L  +G      G     +  IP +   S  +   +LR  I  + +++ T
Sbjct: 461 MASEVDHMEERLASVGFVFSV-GDGETLLEGIPDVPGCSSVSPVDMLRTTIAALSENTDT 519

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
               + +    AT+AC  S++   K+   E   L R++ +    S C HGRP  ++L   
Sbjct: 520 G---EIMWLKWATLACKASVKLTWKLSREEAVALWRDLTRCETPSACPHGRPAVLRLSSD 576

Query: 587 DIEKLFGR 594
            +   F R
Sbjct: 577 KMASHFER 584


>gi|328950998|ref|YP_004368333.1| DNA mismatch repair protein mutL [Marinithermus hydrothermalis DSM
           14884]
 gi|328451322|gb|AEB12223.1| DNA mismatch repair protein mutL [Marinithermus hydrothermalis DSM
           14884]
          Length = 544

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/593 (27%), Positives = 264/593 (44%), Gaps = 66/593 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L  +++ +IAAGE++  P   +KEL+EN+LDA ++R+E  +  GG     +TDNG G
Sbjct: 2   IRRLPPELVREIAAGEVVTAPVDVVKELVENALDAGATRIEVELWAGGIEKIVVTDNGAG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +   E+P+A++RH TSK+ +D S I T GFRGE L +I A + L L SRP     GA + 
Sbjct: 62  IPKAELPLALERHATSKL-EDLSRIRTLGFRGEGLFAIRASARLRLTSRPADQLGGATVE 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             GE ++ V      PGT VEV  LF  +PAR   L+S   E   I   + R+ +  P +
Sbjct: 121 AEGEAVTLVEH-PAPPGTRVEVTRLFAHLPARRAALESPAAEGKKIVAYLTRVLLHRPYL 179

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
               +     ++        G   E    + G    N  + +      + L+G    P  
Sbjct: 180 RLRLAMDGEEKWVF----AGGEALEAARFIWGPVTANRLLPVRMVQEGLRLEGLISRPEL 235

Query: 243 NRGNANQFYVFINGRTV-QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            R   ++ ++ +NGR V   + +L  +  AY E +P G+YPV VL LE+ P  V VN  P
Sbjct: 236 VRPRRDRLHLAVNGRPVEWPEGLLRAVVRAYRELLPAGQYPVGVLNLELPPEAVLVNTTP 295

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           AK  +R   P  +  F+ +++ + +    ++      + +                    
Sbjct: 296 AKDRVRLLEPERVAEFVERAVSETLAAHPLARPLPELRPV-------------------- 335

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
                                           + V  +    +       +    Y+I++
Sbjct: 336 --------------------------------EGVRPARGHRFPRLRYLGRFRDLYLIAE 363

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L +VDQHAAHER++FE++ + +         L  PE++ L   E A   E   +L 
Sbjct: 364 AEDELWVVDQHAAHERILFEELCRRYREEPP--VELAHPELVPLTPEEEARYAERSAELT 421

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
           R G+  E FG     +R +PA L+    P+L+ +++   +        +     +L  +A
Sbjct: 422 RAGLVLEPFGSRRYRVRSVPAFLAAH--PELVAEVVKGAL---GPAGFEKAWRAVLGRLA 476

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +IR+G  +       LL ++        C HGRPT + L   ++ + FGR
Sbjct: 477 CLPAIRAGHPLAQASAQALLDQLAACETPWVCPHGRPTALVLSELELARRFGR 529


>gi|315634031|ref|ZP_07889320.1| DNA mismatch repair protein MutL [Aggregatibacter segnis ATCC
           33393]
 gi|315477281|gb|EFU68024.1| DNA mismatch repair protein MutL [Aggregatibacter segnis ATCC
           33393]
          Length = 616

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 169/579 (29%), Positives = 282/579 (48%), Gaps = 48/579 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++ NQIAAGE++ERP+  +KEL+ENSLDA + +++  I  GG S  +I DNG
Sbjct: 1   MTIRILSPQLANQIAAGEVVERPASVVKELVENSLDAGADKIQIDIENGGASLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  IGIAKEELALALARHATSKIADLADLEAILSLGFRGEALASISSVSRLTLTSRTAEQNEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL+SE+ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIQPASHPVGTTVEVANLFFNTPARRKFLRSEKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++FT +       +     TN    +R++ + G+DFI NA++++ K +++ L G+ 
Sbjct: 181 AKFNINFTLTHNGKVLRQYKSAVTNEQKLKRVAAICGDDFIQNALQIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P F+R   +  Y ++NGR V+DK I   IR AYA+ +   +YP  VL ++++P  +DV
Sbjct: 241 AMPHFHRPQNDLNYCYVNGRMVRDKIITHAIRQAYADYLTNEQYPAFVLFIDLNPNDIDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--TSSVLSKKMISSFHQDNAPKTHL 355
           NVHP K  +RF+   ++ +FI Q I  A+  + I   T          +   + + +T  
Sbjct: 301 NVHPTKHEVRFQQSRLVHDFITQGISNALASEPIPLNTPPTECGVEEPAGVWEVSTQTKP 360

Query: 356 PKYAT------------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSED----------- 392
            + A             S     E  + ++ +   N        +  E            
Sbjct: 361 NRSAAGQNIFAQPTTVYSANAYSENRYHEQPKQQKNPPHFYGGSSPREPITPKVLEAHNA 420

Query: 393 ---------NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                       V E +  +     A A I    ++ Q      ++      +      +
Sbjct: 421 LWTSSEKLVQSNVTEVKKPNTNFLHALALIQHEALLLQQEQRFYLLSLARLQQLKQTLNL 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGPNAIAIREIPA 502
                     SQ LL P I  L + +    ++      ++G    E    + I ++++ A
Sbjct: 481 TLLPT-----SQPLLIPIIFRLSDAQWQAWLQQKTYFEQVGFVFMEEAAQHKITLQKVSA 535

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            L ++N+  ++  ++D+  ++     L + +  +LA +A
Sbjct: 536 HLRQQNLQHMIVSLLDQSFEN-----LPEFLTALLAPLA 569


>gi|329123087|ref|ZP_08251657.1| DNA mismatch repair protein MutL [Haemophilus aegyptius ATCC 11116]
 gi|327471642|gb|EGF17084.1| DNA mismatch repair protein MutL [Haemophilus aegyptius ATCC 11116]
          Length = 629

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 270/570 (47%), Gaps = 57/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ +  K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIEWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDVYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +  +  ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQLNWHTDQSAVENREENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++++ +                                    
Sbjct: 361 IRPNRAAAGQNSFAPKYHEKSQQNQPHFSNTPVFPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTEQRDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQPLLIPIVFRLTESQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           E      + +  +P++L  +N+ + +  ++
Sbjct: 537 ENQAQLRLTLNRVPSLLRTQNLQKCVMAML 566


>gi|256852231|ref|ZP_05557617.1| DNA mismatch repair protein mutL [Lactobacillus jensenii 27-2-CHN]
 gi|260661737|ref|ZP_05862648.1| DNA mismatch repair protein mutL [Lactobacillus jensenii 115-3-CHN]
 gi|282932641|ref|ZP_06338055.1| DNA mismatch repair protein MutL [Lactobacillus jensenii 208-1]
 gi|297205603|ref|ZP_06922999.1| DNA mismatch repair protein HexB [Lactobacillus jensenii JV-V16]
 gi|256615277|gb|EEU20468.1| DNA mismatch repair protein mutL [Lactobacillus jensenii 27-2-CHN]
 gi|260547484|gb|EEX23463.1| DNA mismatch repair protein mutL [Lactobacillus jensenii 115-3-CHN]
 gi|281303215|gb|EFA95403.1| DNA mismatch repair protein MutL [Lactobacillus jensenii 208-1]
 gi|297150181|gb|EFH30478.1| DNA mismatch repair protein HexB [Lactobacillus jensenii JV-V16]
          Length = 622

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 289/631 (45%), Gaps = 53/631 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++S++E      G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENAIDAKASQIEIEFIDAGLKEVIVRDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++ +A +RH TSKIS   D   I T GFRGEAL SI AVSH  +++       G 
Sbjct: 63  GIASEDLDLAFRRHATSKISKERDLFKIATLGFRGEALASIVAVSHTEVITST-DGIKGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   +G +  S    A   GT ++V DLF+  PARL +LKS + ET  I D++ R+A+ +
Sbjct: 122 KAEFAGGEKLSEETHASTKGTEIKVSDLFYNTPARLKYLKSPRTETMKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            +V+FT          +     N N  + ++ + G     + +E +++  +  + G    
Sbjct: 182 SEVAFTLKNEGKL---LLKTPGNNNLRQDLANIYGRFIAKDMIEFSKEDPDFKVSGLLST 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   I  GRYP+ V+L+E+DP  VDVNV
Sbjct: 239 PETTRSNRNFVSILLNGRYIKNYQLTKAILAGYGSKIAQGRYPIAVILIELDPFLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I + I  A+ +     S++ +           A   +     
Sbjct: 299 HPTKEQVRLSKEKELSRLITEGISTALLENTSQVSALANLNKEVDRQDQLAFNLNKNVVD 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV----------------------- 396
           T+ T  +EK   +E +++  +    D     ED+  V                       
Sbjct: 359 TTRTY-EEKPAKEEKQIADQEANYVDLNQVREDDRYVLTASWDKNVAIQVSLTPFTSKDT 417

Query: 397 -----------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                      +E  A        C Q+   YI++   D L ++DQ +A   L +    +
Sbjct: 418 DSSEDSLLTKGDEKIAYSLPYLTYCGQVGA-YILASNEDDLYLIDQVSAQRALKYRDTLK 476

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                     TLLTP ++D    +   I  H  +L  LG+  E FG N++ +   P  L 
Sbjct: 477 QMQEKDYQQ-TLLTPLVLDFGSEDYLEIKNHLSELKELGLILEDFGQNSLLLPSYPLWLK 535

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC---YGSIRSGRKMQSIEMNRLLR 562
            ++    +R+++D  +      + +D + +I +++A       +R   K+       LL 
Sbjct: 536 DESERN-IRELLDLFL-----TSKKDNLTSIKSSLAKAEVRRQVRK-EKLTKEGAQNLLE 588

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           ++    +      G+   +K+  ++++ +F 
Sbjct: 589 QLASLADPYHDPFGQLIIVKITDTELDHMFK 619


>gi|145636727|ref|ZP_01792393.1| DNA mismatch repair protein [Haemophilus influenzae PittHH]
 gi|145270025|gb|EDK09962.1| DNA mismatch repair protein [Haemophilus influenzae PittHH]
          Length = 629

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 155/570 (27%), Positives = 271/570 (47%), Gaps = 57/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKITDLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAFDLNQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPADAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  + +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQINWHTDQNAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPKYYEKPQQNQPHFSNTPVLPNHVSTGYRNYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTVQKDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           E      + + ++P++L  +N+ + +  ++
Sbjct: 537 ENQAQLRLTLNKVPSVLRTQNLQKCVMAML 566


>gi|16272041|ref|NP_438240.1| DNA mismatch repair protein [Haemophilus influenzae Rd KW20]
 gi|260580629|ref|ZP_05848456.1| mismatch repair protein mutL [Haemophilus influenzae RdAW]
 gi|1171080|sp|P44494|MUTL_HAEIN RecName: Full=DNA mismatch repair protein mutL
 gi|1573016|gb|AAC21745.1| DNA mismatch repair protein (mutL) [Haemophilus influenzae Rd KW20]
 gi|260092691|gb|EEW76627.1| mismatch repair protein mutL [Haemophilus influenzae RdAW]
          Length = 629

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/620 (26%), Positives = 284/620 (45%), Gaps = 70/620 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ +  K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIEWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQINWHTDQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  AT+  N+    + ++ + +                                    
Sbjct: 361 IRPNRATAGQNSFAPQYHEKPQQNQPHFSNTPMFPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISDTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALKQIQIEQQALLIPIVFRLTESQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
           E      + + ++P+ L  +N+ + +  ++    +SS        +  + A + C     
Sbjct: 537 ENQAQLRLTLNKVPSALRTQNLQKCVMAMLTRDENSS------SFLTALCAQLECKT--- 587

Query: 548 SG---RKMQ-SIEMNRLLRE 563
                  +    E  RLL +
Sbjct: 588 FNALADALNLLSETERLLTQ 607


>gi|300115281|ref|YP_003761856.1| DNA mismatch repair protein Mutl [Nitrosococcus watsonii C-113]
 gi|299541218|gb|ADJ29535.1| DNA mismatch repair protein MutL [Nitrosococcus watsonii C-113]
          Length = 584

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 170/597 (28%), Positives = 281/597 (47%), Gaps = 29/597 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   + NQIAAGE++ERP+  +KEL+EN+LDA + R+E     GG    ++ D+G 
Sbjct: 8   RIQILPPALANQIAAGEVVERPASVLKELVENALDAGAQRIEIEAEVGGIGLIRVRDDGC 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++PMA+  H TSKI   ++  NI T GFRGEAL SIGAVS L+L SR   +  G 
Sbjct: 68  GIHHDDLPMALSPHATSKIHHEEELLNITTLGFRGEALASIGAVSRLSLCSRIADSEHGW 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     + +  +P+A   GT VE RDLF+  PAR  FL+ E+ E   +  +  ++A+++
Sbjct: 128 CVR----ENTPAQPIAHPVGTTVEARDLFYNTPARRRFLRGEKTEFIRLRTIQTQLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            ++SF  S  +     +   +      +RI+++ G  F  +++    ++  + L G+ G 
Sbjct: 184 FEISFRISYNRRPFLTLPACARPLEQLKRITELCGRTFTEHSMYFKRETEGLCLWGWLGH 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R   +  Y ++N R V+DK +    R AY + +P GR+P  +L LE+   Q+DVN 
Sbjct: 244 PEFARSQTDLQYCYVNHRMVRDKLLRHAARQAYGDRLPQGRHPSYLLYLELPTHQIDVNA 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR    +  FI++++ + + +        L          D   K    K  
Sbjct: 304 HPTKHEVRFRESRRVHGFIVRTLAEILERTEPEEEHRLVSGEFQPQLHDMGNKGQADKTY 363

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             +    E                       +   P +E      +LG   A +   Y++
Sbjct: 364 PIVAEPSEN---------------YSPLKLEKRTSPSKERNEVPSRLGQVQALVLGRYLL 408

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++   GLV+VD   A   L    +R  + +  I  Q LL P    L   + A   +H  +
Sbjct: 409 AENKQGLVLVDLPVARAHLAQAYLRTAYTTGHIIRQPLLLPLTFQLSLQQAAWTEQHAPE 468

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR-IENILA 538
           L  LG+   + GP  + +REIPA + + ++  LL  +  +I             +  ++ 
Sbjct: 469 LRELGLGLHQLGPQTVILREIPAAIQELDLKGLLLALFAQITRQQHIMPANKTPLRELIV 528

Query: 539 TM-ACYGSIRSGRKMQSIEMNRLLREMEKNPN--SSQCNHGRPTFIKLKLSDIEKLF 592
            + A Y +    R     EMN LL+E+E              P + +L   +IE+ F
Sbjct: 529 DLTARYPASTVSRP-SLQEMNALLQELENLYQTAPRLDPS--P-WRELSKHEIEQWF 581


>gi|253991555|ref|YP_003042911.1| DNA mismatch repair protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638433|emb|CAR67055.1| dna mismatch repair protein mutl [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783005|emb|CAQ86170.1| dna mismatch repair protein mutl [Photorhabdus asymbiotica]
          Length = 633

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 166/577 (28%), Positives = 270/577 (46%), Gaps = 50/577 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SR++  I  GG    ++ DNG
Sbjct: 1   MAIKILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRIDIEIERGGVKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  ++I +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  CGINHQDIALALARHATSKIATLDDLEAIISMGFRGEALASISSVSRLTLTSRTEEQNEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   G+ VEV DLF+  PAR  FL++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMEVTVKPAAHPVGSTVEVLDLFYNTPARRKFLRTEKTEFGHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   VS           +            R++ + G  F+  A+ L+ +  +++++G+ 
Sbjct: 181 ARLDVSINLHHNGKLVRQYRPAKDESQHERRLASICGTAFMQQALSLSWQHGDLSIKGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P     + +  Y ++NGR ++D+ I   IR AY + I   + P  VL LE+DP QVDV
Sbjct: 241 ADPMNATASGDIQYCYVNGRMMRDRLINHAIRQAYQDLIQGEQQPSYVLYLEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-LSKKMISSFHQDNAPK---- 352
           NVHPAK  +RF    ++ +FI Q +   + ++G ST       +    +  +N P     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGVTAVLKQRGSSTELDMACCEPAPVWEPENRPSAGEN 360

Query: 353 ------------THLPKYATSLTNTQEKLFLQEN-RLSTNDLLPSDDPTYSEDNDPVEES 399
                       T LPK  +S+ ++       EN +    +        Y +    V E 
Sbjct: 361 HFSRQNSAASVATSLPKEVSSVRSSSVSSRSGENYQYHGGNYQKRQGELYQKMMQSVPEP 420

Query: 400 E--------------------------ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
           E                             +  G   +     Y + +   G+ ++    
Sbjct: 421 EGKRELFPTRTAPVTAEKITSIPVQVKNNSHSFGKVLSIYPPCYALIEFPLGIGLLSLPV 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A      ++++       + SQ LL P  + L + E   +  + + L   GI+A  F   
Sbjct: 481 AERW--LKQVQLTPTEQGLKSQPLLIPLKLSLSKEEADALNRYSDLLGSFGIEASVFHGK 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           A  +R +   L ++N+P+L+  ++  +    +    Q
Sbjct: 539 A-TLRAVSLPLRQQNLPKLISQLLGYLAQQPSASVEQ 574


>gi|255536606|ref|YP_003096977.1| DNA mismatch repair protein MutL [Flavobacteriaceae bacterium
           3519-10]
 gi|255342802|gb|ACU08915.1| DNA mismatch repair protein MutL [Flavobacteriaceae bacterium
           3519-10]
          Length = 592

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 143/592 (24%), Positives = 259/592 (43%), Gaps = 12/592 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA +++VE +I   GK+  Q+ DNG G
Sbjct: 11  IKLLPDHVANQIAAGEVVQRPASIVKELMENAIDAHATKVELIIRDAGKNLIQVVDNGSG 70

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI  ++D   I T GFRGEAL SI AV+ + L ++     TG  
Sbjct: 71  MSDTDARLAFERHATSKINCTEDIFRISTKGFRGEALASIAAVAQVELRTKTKDAVTGTN 130

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G       P+    G+   V++LF+ +PAR  FLK+  VE   I D  +R+A+A+ 
Sbjct: 131 IYIEGGGFQFQEPIQTAEGSNFLVKNLFYNVPARRKFLKNNNVEFRHIIDEFQRVALAHE 190

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V F         +++          +RI +V G       + + E    + L G+   P
Sbjct: 191 NVDFELFHNDDIIFRLR----KSGLLQRIVEVFGRKLHPLLIPIKEDLGWVKLSGFVAKP 246

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    + + F+NGR  +  +    ++ A+   +  G  P   L LE+DP +VDVN+H
Sbjct: 247 EGAKKVRGEQFFFVNGRYFKSPYFNKAVQEAFEGLLLPGYIPTFFLFLELDPEKVDVNIH 306

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ ++F +  +I   +  +I+K++    ++ S    K +            ++     
Sbjct: 307 PQKTEVKFEDENLIFALVRSTIKKSLGIYNVAPSLDFEKDVTMDAFVHQKNGGNVYHAPD 366

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
              +     FL+E   + +    ++    S    P + +            ++   Y + 
Sbjct: 367 VTVDRDYNPFLEERASAGDHAAMTEIYQQSASAKPSKINLFEEEDFDEDLMRLPNGYWLF 426

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
                 +++D    H  ++ E+         +   TLL      + E E        + L
Sbjct: 427 NRNGKTLMLDLGRMHRLIVSER--NAKKKKNVEQHTLLFSLEYHMNETEKNKFRSIKKYL 484

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
             LG +      N + I  +P  L +  + + +  + D I++  T     +   N    +
Sbjct: 485 PSLGFEMVIANDNVLRIDAVPEGLKESQVMKFMEQLFD-ILEYRTEDEFLNFYNNQWVKI 543

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
                 R    +   +   L+++            G+  FI+L L D++  F
Sbjct: 544 QSRS--RF-DFLYKTDAEHLIKDFTALGFPEYLPSGKRCFIELPLEDLKNKF 592


>gi|257066442|ref|YP_003152698.1| DNA mismatch repair protein MutL [Anaerococcus prevotii DSM 20548]
 gi|256798322|gb|ACV28977.1| DNA mismatch repair protein MutL [Anaerococcus prevotii DSM 20548]
          Length = 611

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 182/620 (29%), Positives = 297/620 (47%), Gaps = 35/620 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL +K I +IAAGE+IE P   +KEL+ENS+DA + R+   I  GGK++ ++TDNG
Sbjct: 1   MTILKLDDKTIEKIAAGEVIESPVSIVKELVENSIDAGADRITVEIKNGGKTYIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+++EEI +A  +H TSKI D  D  +I++ GFRGEAL SI +VS +T +S+      G
Sbjct: 61  SGISNEEIELAFSKHATSKIRDFNDLYDIYSLGFRGEALASIVSVSEVTAISKTKDELVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++I  +    +       N GT + V DLF  IP R  FLKS+ VE+N I+ ++  +AI 
Sbjct: 121 SKINFNNGDKTLTSIA-TNVGTSIIVEDLFRDIPVRRRFLKSDIVESNHISKLMYAIAIG 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           YP++SF F   ++  +       N     RI++++ +   ++ +++++ ++   ++G+  
Sbjct: 180 YPEISFKFIKNENIEFSTI---KNEALKMRIAKLLDDKLEDHLIKISDNNDIYQIEGFIS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + RGN +  Y++IN R V+ + I   I  AY   IP GR+PV  L ++ +P+ +DVN
Sbjct: 237 NNNYYRGNRSLQYIYINNRLVESELIRDRIEMAYRGNIPNGRFPVFFLYIKTNPKNIDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  I+F     + N I  SI + IN         + +   +     +     L  Y
Sbjct: 297 VHPNKRVIKFSYEDQLINLIDSSISRYINASNGVKEVSIEENNKNDLMDFSDYSQILNNY 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------------------D 394
             S +  +E  F        ND    +   + + N                        +
Sbjct: 357 NNSKSLVRESSFDNLYESENNDSNKEEAKDFFDSNIDISFKEKSNYEECLENNNTGLEEE 416

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E S    ++       I   Y I +  D L I+D   A E++ F +    F +  +  
Sbjct: 417 IEENSYIKDFEYLNYKCSIFARYSIFERKDKLFILDHRRASEKINFSRFLNQFENKTMDE 476

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P II+L + +    +E  + ++RLG  AE  G  +I IR +P I S     +   
Sbjct: 477 QILLNPLIINLNKFDIDRFIEKKDVINRLGFDAEIIGDRSIIIRSVPFIFSVPEDDKFFY 536

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           D++D      T Y  +   +  L+        R G K+   E   L+  +++  N     
Sbjct: 537 DLLDLDYSKDTDYLYKKLKKLNLSLS-----FRKGDKINEAEAYELIGNIKELDNPYTTY 591

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
            G+   I++   D+EK F R
Sbjct: 592 DGKAVLIEINEKDVEKYFER 611


>gi|229846987|ref|ZP_04467093.1| DNA mismatch repair protein [Haemophilus influenzae 7P49H1]
 gi|229810071|gb|EEP45791.1| DNA mismatch repair protein [Haemophilus influenzae 7P49H1]
          Length = 629

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/570 (27%), Positives = 269/570 (47%), Gaps = 57/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIRILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIVRQYRPAFDLNQQLKRVAVICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQLNWHTEQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVFPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ +D  ++G +  
Sbjct: 481 LSL----EKLQRLRWQLALKQIQIEQQPLLIPIVFRLTESQFQAWQQYSDDFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           E      + + ++P +L  +N+ + +  ++
Sbjct: 537 ENQAQLRLTLNKVPNVLRTQNLQKCVMAML 566


>gi|148825652|ref|YP_001290405.1| DNA mismatch repair protein [Haemophilus influenzae PittEE]
 gi|166232090|sp|A5UB71|MUTL_HAEIE RecName: Full=DNA mismatch repair protein mutL
 gi|148715812|gb|ABQ98022.1| DNA mismatch repair protein [Haemophilus influenzae PittEE]
          Length = 629

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 269/570 (47%), Gaps = 57/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIRILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIVRQYRPAFDLNQQLKRVAVICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTEQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 380 -----------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                      D+  +     S+    +            A + I    ++ Q      +
Sbjct: 421 LLRTLPPTAQKDISNTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLLQQNQDFFL 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-A 487
           +      E+L   + +      +I  Q LL P +  L E +     ++ ++  ++G +  
Sbjct: 481 LSL----EKLQRLQWQLALQQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDNFKKIGFEFI 536

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           E      + + ++P +L  +N+ + +  ++
Sbjct: 537 ENQAQLRLTLNKVPNVLRTQNLQKCVMAML 566


>gi|145642149|ref|ZP_01797718.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
 gi|145273140|gb|EDK13017.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21]
          Length = 633

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/628 (26%), Positives = 283/628 (45%), Gaps = 74/628 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEAQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFSTAFTLTHNGKIIRQYRPAEALNQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVINHAIRQAYAQYLPSDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +      +  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENHEEKTVREPQPHYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTN---------------------------------- 379
             P  A +  N+    + ++ + +                                    
Sbjct: 361 IRPNRAAAGQNSFAPQYYEKPQQNPPHFFDGRGLSSHVTADYGDYRENYKKDTPSKTEQQ 420

Query: 380 ---------------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                          D+  +     S+    +            A + I    ++ Q   
Sbjct: 421 LYGELLRTLPPTEQKDISNTAQQNISDTAKIIPTEIIECSSHLRALSLIENRVLLLQQNQ 480

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
              ++      E+L   + +       I  Q LL P +  L E +     ++ +D  ++G
Sbjct: 481 DFFLLSL----EKLQRLQWKLALQQMHIEQQPLLIPIVFRLTESQFQKWQQYSDDFKKIG 536

Query: 485 IK-AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
            +  E      + +  +P++L  +N+ + +  ++    +SS        +  + A + C 
Sbjct: 537 FEFIENQAQLRLTLNRVPSLLRTQNLQKCVMAMLTRDENSS------PFLTALYAQLECK 590

Query: 544 GSIRSG---RKMQ-SIEMNRLLREMEKN 567
                      +    E  RLL ++ + 
Sbjct: 591 T---FNALADALNLLSETERLLTQINRT 615


>gi|325846706|ref|ZP_08169621.1| DNA mismatch repair protein, C-terminal domain protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481464|gb|EGC84505.1| DNA mismatch repair protein, C-terminal domain protein
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 601

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/609 (27%), Positives = 296/609 (48%), Gaps = 24/609 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI +L EK I QIAAGE+IE P   IKEL+ENS+DA++  +   I  GGKS+ ++TD+G
Sbjct: 2   MKIIELDEKTIEQIAAGEVIESPVSIIKELVENSIDADAKNIIVEIKNGGKSYIRVTDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  ++   A +RH TSKI D  D   I + GFRGEAL SI + + +  +S+      G
Sbjct: 62  IGIEEDDFKRAFKRHATSKIKDFSDLYRIFSLGFRGEALSSIISCADVKAVSKTSNQEIG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++     K+ S   +A N GT +EV +LF  +P R  FL S+  E+N I+ +I+ +A+ 
Sbjct: 122 KKLEFKNGKMESKSSIATNNGTSIEVFNLFSNLPVRRKFLGSDINESNKISKIIQALALG 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  VSF F       ++      N +  ++I  +I E+  +N +++  K++   + GY  
Sbjct: 182 YENVSFKFIKDNRLIFQTL---ENDSLKDKIINLIDENLKDNILKIKAKNSLYNISGYIS 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + RGN +  Y+F+N R +++  I   + + Y  +IP  RYP   L ++ +   +DVN
Sbjct: 239 NTNYYRGNRSFQYIFVNNRLIENNNISKAVESKYKSSIPNQRYPAFFLFIKTNTNNIDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +HP K  I+F     +   +  ++ K +  N           +K   +F+ D A   +L 
Sbjct: 299 IHPNKKEIKFTYEDNLIELLEDNVSKVLYENSDFKKVKMPEDQKEELNFYDDYAEVLNLY 358

Query: 357 KYATSLTNTQEKLFLQENRLST-----------NDLLPSDDPTYSEDNDPVEESEATHYQ 405
                   + EK  + +  +S            N +   +    S++ +          +
Sbjct: 359 NKVNEEKTSYEKENIDDKSISDAHDDFFEVEELNFIEKEEKKKASKELEDKRNKNFIDTK 418

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
             +    I   Y +    D ++++D   A +R+ F++  ++F   +I SQ LL  +II +
Sbjct: 419 NLLYKTSIFNRYSLFINLDKILLLDHRRADQRIKFDEFIENFKKNQINSQQLLEAKIIKV 478

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E    +E  +   +LG + + F  + + IR +P +       +   +++D  ID S 
Sbjct: 479 SLEEYNKYIEKKDVFKKLGFEIDTFSFDKLIIRSVPLVFDNPENFEFFYNLLD--IDDSN 536

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
               +++I +++       + R G K+   E    + ++ K+ N  +   G+PT I ++ 
Sbjct: 537 ENLFKEKISSLIN----KNTFRKGDKIDESEAYATIDKLNKSDNPYKTYDGKPTIITIEE 592

Query: 586 SDIEKLFGR 594
           +++EK F R
Sbjct: 593 NELEKYFDR 601


>gi|88608179|ref|YP_506489.1| MutL/HexB family DNA mismatch repair protein [Neorickettsia
           sennetsu str. Miyayama]
 gi|123750011|sp|Q2GDF7|MUTL_NEOSM RecName: Full=DNA mismatch repair protein mutL
 gi|88600348|gb|ABD45816.1| DNA mismatch repair protein, MutL/HexB family [Neorickettsia
           sennetsu str. Miyayama]
          Length = 652

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 178/662 (26%), Positives = 313/662 (47%), Gaps = 79/662 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI  L  +IIN+IAAGEI+E+P+ A+KEL+EN++DA S+ ++  +   G++  ++TDNG
Sbjct: 1   MKIHILPIEIINKIAAGEILEKPANAVKELVENAIDAGSTSIKVELEEVGRNLIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G++ E++P+A+++H TSK++  D  +I   GFRGEAL SI   S + + S         
Sbjct: 61  VGISREDLPLAIEKHATSKLNTKDLYDISYLGFRGEALHSIAITSEMKIASCFNGEG--- 117

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +   +   V+P  +  GT+VEVR LF  IP +L FL+SE+ E + I +++ R+A+  
Sbjct: 118 --YVIDAQTKEVKPHHIKCGTLVEVRKLFHNIPNKLRFLRSEKTELSSIIELLNRLALVN 175

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F   +     +     +      +   +V+G++F+ N + +   ++ I  + + G+
Sbjct: 176 PNIAFELISNGRQVFDYQTATQLKRMEQL--KVLGKEFVENMIHVKHTNDGIFGELFLGL 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT      N   +F+NGR V+D  I S +R AY + IP   YP+ V+ + +   +VDVN+
Sbjct: 234 PTLT-QKRNNCLIFVNGRPVKDSVISSVMRHAYNDYIPKNTYPIAVIFIRVHNNEVDVNI 292

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT------ 353
           HP KS ++FR+P +IR F++    +++ + G STS+ ++ + +  F+Q    +T      
Sbjct: 293 HPNKSEVKFRDPQVIRRFLLSVSSRSLLQCGRSTSTTVADRAVEQFNQLLKKQTAFRKET 352

Query: 354 ----------HLPKYATSLTNTQE---------------------KLFLQENRLSTNDLL 382
                       PK   ++  +QE                           ++      L
Sbjct: 353 VSKTTESGFFQSPKAKKAIDQSQEYAKQFEGKRNLDFDQMQNNNGPFHFSTDQSEEALPL 412

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIA------------CAQIHQNYIISQTTDGLVIVD 430
            S   T  + ++ +   +     + +                 H  ++ ++         
Sbjct: 413 MSHKKTSEDYSNKLPLEKQQSPSIFLHDNRDTSFLQQQLRKINHCEHLQNEKHFETFGKF 472

Query: 431 QHAAH----------------ERLIFEKMRQDFNSTKITSQ--TLLTPEIIDLLEGECAL 472
           +   H                +    E++  +     ITS    LLT E + L E    +
Sbjct: 473 KCQVHGTFIITETENEMIIIDQHAAHERILYEQMKKSITSPGQNLLTAEFVPLSEKAVEI 532

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           +  + E L  +G+  ER    A+ +  +P         +L+ DI   + +     TL +R
Sbjct: 533 LSFNVEKLKEIGLVVERVSHCAVMVNSLPEAFKNVPTNELIEDIASLLEEEIEPKTLLER 592

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           I    A +AC  +I++   +   E+  LL  ME  P++ QCNHGRPT I+L   +IEKLF
Sbjct: 593 IH---ANIACKRAIKANHNLTREEIEELLTLMEDIPHTGQCNHGRPTHIRLPRKEIEKLF 649

Query: 593 GR 594
            R
Sbjct: 650 LR 651


>gi|260558368|ref|ZP_05830564.1| DNA mismatch repair protein [Enterococcus faecium C68]
 gi|35367183|gb|AAN85563.1| MutL [Enterococcus faecium]
 gi|35367192|gb|AAN85565.1| MutL [Enterococcus faecium]
 gi|260075542|gb|EEW63848.1| DNA mismatch repair protein [Enterococcus faecium C68]
          Length = 702

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/699 (23%), Positives = 291/699 (41%), Gaps = 110/699 (15%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE----------------------------KLFLQENRLSTND 380
            A +   PK  +SL   +E                              F +EN      
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENFSGFSEENTSYPEK 419

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI------------ 428
              + D      ++ VE++     +         +     Q    +              
Sbjct: 420 TAKTVDKLGENVDNFVEKTVEKSEKKEFPIVDNMEKTNEEQADKSVEEDEKIYEEELTLH 479

Query: 429 --VDQHAAHERLIFEKMRQDFNSTKITSQTLLT-------PEIIDLLEGECALIMEHDED 479
              D    +++ + + +++      +     L          +         +I +H   
Sbjct: 480 PEFDFTQGNDKTLEQAIKKLETEKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQ 539

Query: 480 LHRLGIKA--ERFGPNAIAIRE--IPAILSKKNIPQ--------LLRDIIDEIIDSSTTY 527
             R+  +   E+ G  +  ++E  +P +L   N           LL D    + +     
Sbjct: 540 -ERIKYEYFREKIGEVSDDLQELLVPIVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNS 598

Query: 528 TL-------------QDRIENIL------ATMACYG-----SIR--------SGRKMQSI 555
            +             +  I  ++       +++        +I         +   +   
Sbjct: 599 FIVRAHPTWYPNGEEESIIREMIDMLLTTGSVSVKKFREATAIMMSCKRSIKANHYLNEA 658

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   LL+++ +  N   C HGRP  I    SD+E++F R
Sbjct: 659 QARVLLKDLARCENPFNCPHGRPVLIHFTNSDMERMFKR 697


>gi|293392159|ref|ZP_06636493.1| DNA mismatch repair protein MutL [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952693|gb|EFE02812.1| DNA mismatch repair protein MutL [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 616

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/579 (28%), Positives = 287/579 (49%), Gaps = 49/579 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++ NQIAAGE++ERP+  +KEL+ENSLDA + +++  I  GG    +I DNG
Sbjct: 1   MTIRILSPQLANQIAAGEVVERPASVVKELVENSLDAGADKIQIDIENGGAGLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  IGIAKEELALALARHATSKIADLADLEAILSLGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKISS-VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + + ++P +   GT VEV +LFF  PAR  FL+SE+ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMKTIIQPASHPVGTTVEVANLFFNTPARRKFLRSEKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++FT +       +     T+    +R++ + GE FI NA++++ K +++ L G+ 
Sbjct: 181 AKFHINFTLTHNGKVLRQYKSAVTHEQKLKRVAAICGEHFIQNALQIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P FNR   +  Y ++NGR V+DK I   IR AYA+ +   +YP  VL ++++P +VDV
Sbjct: 241 ALPQFNRPQNDFNYCYVNGRMVRDKTITHAIRQAYADYLTTEQYPAFVLFIDLNPNEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK----------------------------- 328
           NVHP K  +RFR   ++ +FI Q I  A+                               
Sbjct: 301 NVHPTKHEVRFRQSRLVHDFITQGISNALASEQMHLNPSSMENAVEEPTGVWEAPTYTKP 360

Query: 329 ------KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
                 + I   +        +  +++  + H             +  + +N L+ +  L
Sbjct: 361 NRSAAGQNIFAPTTGYSATAYAEKKNDGTQKHRQSSPHFYRENAHREQITQNVLNAHKTL 420

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            +      +    + E    +     A A I+   ++ Q      ++    AH + +  +
Sbjct: 421 WTALKNQPQTEMTIAEVSKPNTDFLHALALINDEALLLQQEQHFYLLS--LAHLQHLKLE 478

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGPNAIAIREIP 501
           +         TSQ LL P I  L + +    ++      ++G    E    + I ++++ 
Sbjct: 479 LNLTLA---PTSQPLLIPIIFRLSDAQWQAWLQQKPLFEQIGFTFTEETTQHKITLQKVS 535

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
           A L ++N+ Q++  +++  I++     L + +  +L ++
Sbjct: 536 AHLRQQNLQQVIISLLNHSIEN-----LPEFLTALLTSL 569


>gi|312873709|ref|ZP_07733754.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|311090707|gb|EFQ49106.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
          Length = 625

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 171/631 (27%), Positives = 286/631 (45%), Gaps = 50/631 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++       G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GGVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + VRDLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDGNKVKQEAIASPQGTKIVVRDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +  +    ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELTNQQK---QLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNEAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        + +  +  T     
Sbjct: 359 DTSRIPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDENVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASQLSSEVTTSSEQILVNRLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQL--LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           L   +  Q+  + D+I   I++       +  + I+AT   +  IR  + + S+EM  +L
Sbjct: 538 LENCDQIQIKAVIDLILAYINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEML 592

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
             +  + N      G+    K+  +D+ KLF
Sbjct: 593 TSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|206577274|ref|YP_002240875.1| DNA mismatch repair protein MutL [Klebsiella pneumoniae 342]
 gi|290512270|ref|ZP_06551637.1| DNA mismatch repair protein mutL [Klebsiella sp. 1_1_55]
 gi|238058935|sp|B5Y334|MUTL_KLEP3 RecName: Full=DNA mismatch repair protein mutL
 gi|206566332|gb|ACI08108.1| DNA mismatch repair protein MutL [Klebsiella pneumoniae 342]
 gi|289775265|gb|EFD83266.1| DNA mismatch repair protein mutL [Klebsiella sp. 1_1_55]
          Length = 619

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/614 (26%), Positives = 275/614 (44%), Gaps = 61/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  SGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVARLTLTSRTAEQQEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLNHNGKVIRQYRAVAQDGQRERRLGTICGAAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPLHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  +            +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLAEKDDPPTPRQMPENRIAAGGN 360

Query: 357 KYATS-----------------------------LTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++A                                 + Q     Q+  L    L     P
Sbjct: 361 QFARPSEAREAATRFSITSSREPAASGGSSGGASWPHAQPGYQKQQGALYRQLLDTPAAP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             ++ +    E        G     +  +  + +    L ++    A   L   ++    
Sbjct: 421 RPAQPSAAPAELAGHSQSFGRVLTIVGGDCALLEREGSLALLSLTVAERWLRQAQL--TP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +  + +Q LL P  + + EGE   +      L +LGI+        + +R +P  L ++
Sbjct: 479 GTEAVCAQPLLIPLRLKVTEGEKRALAAAQSALTQLGIEL-HTDALHVTVRAVPLPLRQQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN-------RL 560
           N+  L+ ++I  +   +        + NI   MA        R + S + +        L
Sbjct: 538 NLQILIPELIGYLAQQNAFD-----VGNIAQWMA--------RNLTSEQASWNMAQAIAL 584

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 585 LADVERL-----CP 593


>gi|187734600|ref|YP_001876712.1| DNA mismatch repair protein MutL [Akkermansia muciniphila ATCC
           BAA-835]
 gi|238691861|sp|B2ULE2|MUTL_AKKM8 RecName: Full=DNA mismatch repair protein mutL
 gi|187424652|gb|ACD03931.1| DNA mismatch repair protein MutL [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 633

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 174/637 (27%), Positives = 287/637 (45%), Gaps = 51/637 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  +S  + +Q+AAGE++ERP+  +KEL+ENSLDA +  V   I  GG    ++TD+
Sbjct: 1   MPSIHVMSPTLASQVAAGEVVERPASVVKELVENSLDAGAKFVRVEIRRGGVGMIKVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM+  +  +  +RH TSK+S  ++   I   GFRGEALPSI +VS   L +R  Q+  
Sbjct: 61  GSGMSRADAELCTKRHATSKLSSLEELFEITHLGFRGEALPSIASVSRFKLCTRQQQDLE 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +I I G      R   ++PGT +EV DLF+  PAR  FLKS + E + +   IR  A+
Sbjct: 121 GWEIRIDGGLEHEPRSSGVSPGTAIEVADLFYNTPARRKFLKSAETEASHVEHQIRLHAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-ITLQGY 236
           AYP+V F +       + +   +   +   RIS +         + +       I++ G+
Sbjct: 181 AYPQVRFAYKRDDQLVFDLPATA---DLRVRISALTDAATAAALIPIETTIGPGISITGF 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
               +  R      YVF+N R V+D+ I   IR  Y    P G +P + L +E++P  VD
Sbjct: 238 LLPLSEARRTRKGQYVFMNTRPVEDQLINRAIRDGYGGF-PTGLHPALFLYMEVEPALVD 296

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG----ISTSSVLSKKMISSFHQDNAPK 352
           VNVHPAK  +RFR    + N I+++I   + K       + ++   ++ +   H   AP 
Sbjct: 297 VNVHPAKKEVRFRRSADVVNTIVEAIANTLQKHARQEIHAAAAPEPERTLPPAHSTTAPY 356

Query: 353 THLPKYATSL--------------TNTQEKLFLQENRLSTN------------------- 379
             +P  +T+               +  Q  L     +                       
Sbjct: 357 GEIPARSTNPGSAFPAAARPAPASSAAQPPLSSSAKQSHGAVPPPTLRAIPLKQVPATQG 416

Query: 380 --DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
             D    +D   + +       E            + Q + + +T +GLV++   AA ER
Sbjct: 417 KLDFHRQEDEETARNAHENAALERDASAGFSYLGTLRQQFALFETPEGLVLMHPKAARER 476

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           +IFE++R    +  + SQ LL P ++DL   + A+I +      + G+    FG N I I
Sbjct: 477 IIFERLRARREA-PMPSQQLLDPVVLDLDPRDFAVIRQFAPHFDQAGMAVTPFGQNTIRI 535

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIE 556
             IPA+L  +N    L +++D +  S  +   +           A   + R   ++    
Sbjct: 536 ESIPALLELENARAFLLELVDRLTQSEFSRNAKRVAYETFIGEFARKSAWR--ERISPHR 593

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
              +L+++           G+PT +   + +I++ FG
Sbjct: 594 APAILKDLLACEVPYCTPGGKPTLVNYSVPEIKRKFG 630


>gi|228470609|ref|ZP_04055466.1| DNA mismatch repair protein MutL [Porphyromonas uenonis 60-3]
 gi|228307736|gb|EEK16712.1| DNA mismatch repair protein MutL [Porphyromonas uenonis 60-3]
          Length = 646

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 147/650 (22%), Positives = 276/650 (42%), Gaps = 68/650 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA ++++   +   GK   ++ D+G G
Sbjct: 5   IHLLPDSIANQIAAGEVIQRPASMLKELVENAIDAHATQIAIELQDAGKELMRVIDDGVG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  DD   + + GFRGEAL SI AV+ + L++R   ++ G +
Sbjct: 65  MSPLDARMAFERHATSKISSVDDLFTLRSMGFRGEALASIVAVAQIELITRQADSDIGYK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S  P     GT + V++LF+ +PAR  FLK  + E   I     R+A+ YP
Sbjct: 125 LLINGSEVISSAPTVAEIGTSITVKNLFYNVPARRRFLKGSETELRHIYRQFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT  +       +       +   RI  ++G+ +    + +  +     + G+  +P
Sbjct: 185 EIAFTLYSEGKLIRNLP----KSDLQHRIVDLLGKSYSKQLIPIEYQGPLANVSGFITLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    Q + F+NGR ++  +    +   + + +  G  P   +  ++DP ++DVN+H
Sbjct: 241 RDAKRRGAQQFFFVNGRYMKHPYFHRAVMNVFEDLVAPGSQPNYFIYFQVDPSRIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL----- 355
           P K+ I+F +   I   ++  +++ ++      +   S   +      +A +        
Sbjct: 301 PTKTEIKFLDEQAIFKLLMVVLREHLSTTSAMPAITFSTDQLIEIPAYDATRQSSTALQP 360

Query: 356 ------PKYAT--SLTNTQEKLFLQENRLSTNDLLPS----DDPTYSEDNDPVEESEATH 403
                 P+Y    +++   +K     + +S+          DD         + ES+ T 
Sbjct: 361 PPVQIDPEYNPFKAISTDDQKPLDPLSSMSSGSPAHWESFIDDFQQRRGESTLPESQPTE 420

Query: 404 --------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                                          + Y+ +  +D L ++    A  R+ +E+ 
Sbjct: 421 AAPTAMDPLFTVSASPSQPVPHSSNLVYTFQERYLFTTMSDRLAVIQIERALLRIYYEQQ 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF-------GPNAIA 496
                     +Q LL  E + L         E  E L ++G +             N   
Sbjct: 481 IATLTLEPDQAQPLLFAEELSLPSDLYPTHHELVESLQQIGFEITPQAEASADPDENVYL 540

Query: 497 IREIPAILSKKNIPQLLR----DIIDEIIDSSTTYTLQDRIENILATM-----ACYGSI- 546
           I  +P  L    +  L+     + +D++    T  TL      ILA +     A   +I 
Sbjct: 541 ITSVPKPLRPIGVADLITKTLGEYLDQVDKDDTDTTLPPA--EILAQLFLSGEALRQAIE 598

Query: 547 --RSGRKMQSIEMN--RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
             R    + +      +++ ++   PNS     GR   + L   +I+K F
Sbjct: 599 LVR--HTLHARAAQPSQIISDLFLTPNSQFDPLGRSIMVSLTSDEIDKWF 646


>gi|327405501|ref|YP_004346339.1| DNA mismatch repair protein mutL [Fluviicola taffensis DSM 16823]
 gi|327321009|gb|AEA45501.1| DNA mismatch repair protein mutL [Fluviicola taffensis DSM 16823]
          Length = 625

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/628 (25%), Positives = 296/628 (47%), Gaps = 45/628 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+++RP+  +KEL+ENS+DA ++++E  I   G++  QI DNG G
Sbjct: 5   IRLLPDHVANQIAAGEVVQRPASVVKELVENSIDAGATKIELHIKDAGRTLIQIVDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKI  +DD   + T GFRGEAL SI A++H+TL ++   +  G +
Sbjct: 65  MSPLDARMSFERHATSKIANADDLFALKTKGFRGEALASIAAIAHVTLQTKRATDELGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++ +  P     G   E+++LFF +PAR NFLKS+ VE   I D   R+ + + 
Sbjct: 125 IVIEGTQVVNQEPTQCAVGCNFEIKNLFFNVPARRNFLKSDNVEFKHIIDEFERVVLPHH 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF         Y ++         +RI  V G+ F ++ V + E+++ + L G+ G P
Sbjct: 185 DISFRLVHNDQEIYHLSPGP----LRKRIVDVFGKKFTDHLVPVTEQTDIVELNGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              + +  + ++F+N R  +D +    I  A+   +P   +P   L L+IDP+Q+DVNVH
Sbjct: 241 EVAKKSRGEQFLFVNNRFFKDTYFNHAISAAFEHLLPSKLFPSYFLFLDIDPKQIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM------------------- 341
           P K+ I+F     I + I  +++  + K  I+ +    ++                    
Sbjct: 301 PTKTEIKFEEDKAIYSIIRSAVRLGLGKFNITPTLDFERETEFDIPVSMIGQTPVAPEIR 360

Query: 342 ----------------ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
                             + +  N   + +PK A+  +   +  F  + + S+ D L + 
Sbjct: 361 VDKNYNPFHAHNTREGQFAANHANTNTSSVPKNASFSSALNKAGFGSQFQSSSLDELWNS 420

Query: 386 DPTYSEDNDPVEESEAT-HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
           +   +E  +   + +             +  +++IS   +GL++      +ERL++  + 
Sbjct: 421 ESVENELKETQTQIQIDVEALKSTGPFIVKGSFVISSVPEGLLVFHYRRIYERLLYNDLM 480

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
           + F    + SQ L+ P    L + E     EH++ L R+G    ++    I I  IP IL
Sbjct: 481 RGFFVNPLASQQLIFPMEKKLSKQEQLAWNEHEKTLSRIGFNW-KWEQQDIHIHGIPEIL 539

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            +  +   +  I++++     T    +    +L+ +A  GS+          +   +  +
Sbjct: 540 DESTVLSCVDKILEQL--QMGTLDKGEIAHTVLSQIAFAGSMSFKIPNDQQAIADYIARL 597

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            ++   +    G+    ++    I +LF
Sbjct: 598 FESDEHTFSPSGKRIIAQITNEQIIQLF 625


>gi|301168660|emb|CBW28251.1| methyl-directed mismatch repair protein [Haemophilus influenzae
           10810]
          Length = 637

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/604 (26%), Positives = 277/604 (45%), Gaps = 71/604 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKITDLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ +  K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIVRQYRPAEAINQQLKRVAAICGDDFVKNALRIEWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDVYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +  +  ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTDQSAVENREENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRL------------------------------------- 376
             P  A +  N+    + ++ +                                      
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 377 ----------------STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                           +  ++  +     S+    +            A + I    ++ 
Sbjct: 421 LLRSLPPTAQKDISDTAQQNISDTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLL 480

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           Q      ++      E+L   + +      +I  Q LL P I  L E +     ++ +D 
Sbjct: 481 QQNQDFFLLSL----EKLQRLQWQLALKQIQIEQQPLLIPIIFRLTEAQFQAWQQYSDDF 536

Query: 481 HRLGIK-AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
            ++G +  E      + + ++P+ L  +N+ + +  ++    +SS        +  + A 
Sbjct: 537 KKIGFEFIENQAQLRLTLNKVPSALRTQNLQKCVMAMLTRDENSS------SFLTALCAQ 590

Query: 540 MACY 543
           + C 
Sbjct: 591 LECK 594


>gi|212696180|ref|ZP_03304308.1| hypothetical protein ANHYDRO_00716 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676809|gb|EEB36416.1| hypothetical protein ANHYDRO_00716 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 601

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 165/609 (27%), Positives = 296/609 (48%), Gaps = 24/609 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI +L EK I QIAAGE+IE P   IKEL+ENS+DA++  +   I  GGKS+ ++TD+G
Sbjct: 2   MKIIELDEKTIEQIAAGEVIESPVSIIKELVENSIDADAKNIIVEIKNGGKSYIRVTDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  ++   A +RH TSKI D  D   I + GFRGEAL SI + + +  +S+      G
Sbjct: 62  VGIEEDDFIRAFKRHATSKIKDFSDLYRIFSLGFRGEALSSIISCADVKAVSKTSNQEIG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++     KI S   +A N GT +EV +LF  +P R  FL S+  E+N I+ +I+ +A+ 
Sbjct: 122 KKLEFKNGKIGSKSSIATNNGTSIEVFNLFSNLPVRRKFLGSDINESNKISKIIQALALG 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  VS  F       ++      N +  ++I  +I E+  +N +++  K++   + GY  
Sbjct: 182 YENVSLKFIKDNRLVFQTL---ENDSLKDKIINLIDENLKDNILKIKAKNSLYNISGYIS 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + RGN +  Y+F+N R +++  I   + + Y  +IP  RYP   L ++ D   +DVN
Sbjct: 239 NTNYYRGNRSFQYIFVNNRLIENNNISKAVESKYKSSIPNQRYPAFFLFIKTDTNNIDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +HP K  I+F     +   +  ++ K +  N           +K   +F+ D A   +L 
Sbjct: 299 IHPNKKEIKFTYEDNLIELLEDNVSKVLYENSDFKKVKVPEDQKEELNFYDDYAEVLNLY 358

Query: 357 KYATSLTNTQEKLFLQENRLST-----------NDLLPSDDPTYSEDNDPVEESEATHYQ 405
                  N+ EK  + +  +S            N +   +    S++ +          +
Sbjct: 359 NKVNEEKNSYEKENIDDKSISDTHDDFFEVEELNFIEKEEKKKVSKELEDKRNKNFIDTK 418

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
             +    I   Y +    D ++++D   A +R+ F++  ++F   ++ SQ LL  +II +
Sbjct: 419 NLLYKTSIFNRYSLFINLDKILLLDHRRADQRIKFDEFIENFKKNQMNSQQLLEAKIIKV 478

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E    +E  +   +LG + + F  + + IR +P +       +   +++D  ID S 
Sbjct: 479 SLEEYNKYIEKKDVFKKLGFEIDTFSFDKLIIRSVPIVFDNPENLEFFYNLLD--IDDSK 536

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
               ++++ +++       + R G K+   E    + ++ K+ N  +   G+PT I ++ 
Sbjct: 537 EDLFKEKLSSLIN----KNTFRKGDKIDESEAYATIDKLNKSENPYKTYDGKPTIIAIEE 592

Query: 586 SDIEKLFGR 594
           +++EK F R
Sbjct: 593 NELEKYFDR 601


>gi|282856371|ref|ZP_06265650.1| mismatch repair protein MutL [Pyramidobacter piscolens W5455]
 gi|282585742|gb|EFB91031.1| mismatch repair protein MutL [Pyramidobacter piscolens W5455]
          Length = 609

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 176/630 (27%), Positives = 283/630 (44%), Gaps = 61/630 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L + +  +IAAGE+IERP   +KELIENSLDA ++ ++  +  GGK    + DNG
Sbjct: 2   MGIHRLPDGLSRKIAAGEVIERPLSVVKELIENSLDAGATAIDVELEQGGKVLISVKDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+P+AV++H TSKIS   D   I T G+RGEAL S+ AVSH  + SR P    G
Sbjct: 62  GGIVPEELPLAVEKHATSKISSEADLEAIATLGYRGEALSSVCAVSHFEIYSRRPDLPEG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A +         V  V + PGT V V+DLF+ +PAR  FLK+   E   I+ +++  A A
Sbjct: 122 ASLHYENGA-PRVTAVPLRPGTTVVVKDLFYNLPARRKFLKTAAAEFRRISRLVQDYAFA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG--EDFINNAVELNEKSNEITLQGY 236
           YP V+F+ +    N +K    S +G   + ++++ G   +   +A E    S  +  Q  
Sbjct: 181 YPAVAFSLTHDGKNVFK---SSGDGGVEKLLARMWGDEPEIRASASETATSSVRLWWQ-- 235

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                    +  Q   F+NGR V D    + IR+A             +++L +    VD
Sbjct: 236 ----DLGPQSRFQLISFVNGRRVSD----AVIRSAIHGF-HWATRGNWLVMLALPAEDVD 286

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAKS I FR    + + + ++ ++       +       +M  S    +AP    P
Sbjct: 287 VNVHPAKSEILFRRSGEVYDLVRKAAERLAKGFSDAPILGRVGRMPDSSPSFDAPAESFP 346

Query: 357 K------------------------------YATSLTNTQEKLFLQENRLSTNDLLPSDD 386
                                          +  +  N       QE             
Sbjct: 347 AGGTTAQGGSAAWRRPPEREPHPFSRLEEPVFRAASPNAFAARGSQEASGERLPFSSYRQ 406

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
              +  +     +E+      +  AQ+ Q Y++  T DGL+IVD HAAHER+ +E++ + 
Sbjct: 407 TAPASSSGETSAAESAAPDGKLYLAQLPQGYLVFSTPDGLLIVDPHAAHERVNYERILKA 466

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI--L 504
               +   + ++    I L        M +   L  L    +  G     +  +P    +
Sbjct: 467 CADPRGQEKLIMP---IPLPPTLKDDAMANRGKLAELNFAIDEDGS----LSRLPVHAKV 519

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
              +   LLR  ++ I +        D + N+ AT AC  S++   ++++ E  +LL E+
Sbjct: 520 VGVSPVDLLRSALNAIGERREHS---DSLVNVFATKACKASVKLTTRLEAAEAYQLLAEL 576

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           E+    + C HGRPT ++L    +++ FGR
Sbjct: 577 ERCDQPNACPHGRPTVLRLTGGALDRHFGR 606


>gi|298372649|ref|ZP_06982639.1| DNA mismatch repair protein MutL [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275553|gb|EFI17104.1| DNA mismatch repair protein MutL [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 599

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/600 (26%), Positives = 282/600 (47%), Gaps = 21/600 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+ENS+DA + ++  V+ G G++  Q+ DNG G
Sbjct: 5   INILPDSIANQIAAGEVIQRPASVVKELVENSVDAGADKISVVVKGAGRTLVQVADNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  M+ +RH TSKIS   D   + T GFRGEAL SI AV+ + + +R    + G  
Sbjct: 65  MSHTDARMSFERHATSKISKAGDLFGLRTMGFRGEALASIAAVAAVEMRTRQAGADFGTV 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+   I    P +   GT+  V++LFF +PAR  FLKS++ E   I    +R+A+A P
Sbjct: 125 VEIAASNIIRHEPDSCVEGTVFAVKNLFFNVPARRKFLKSDETELRHIIYEFQRVALANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED---FINNAVELNEKSNEITLQGYT 237
            +  +        Y++      GNF +RI+ + G+    + +  +++  ++N + + G+ 
Sbjct: 185 HIELSLYNGTEALYELPA----GNFKQRITAIFGKKSKNYASQLIDIAAETNLVKISGFV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P     NA   + F+NGR ++  +    I+ AY   +P    P+  + LE+ P  +DV
Sbjct: 241 GSPQSASRNAT-QFFFVNGRFMRHPYFGKAIQMAYDNMLPHDTQPIYFITLEVKPENIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------KMISSFHQDNAP 351
           NVHP K+ I+F +   I   I+  +++++ K     S               + ++ + P
Sbjct: 300 NVHPTKTEIKFEDEKEIFAIIMSCVRESLGKFNFLPSLDFDTNRTLDIPAYLADNKPDMP 359

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT--HYQLGIA 409
           + +                 +   +   D+L       +   D  E+             
Sbjct: 360 RVNTDNNYNPFAAAHSTSSNRGISVKNWDMLYERRQQQTSPYDTAEQKAFFSPDEVAKSN 419

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
                  Y+I+    GL+I+D+  A ER+ +E++       +  +Q LL  E I     E
Sbjct: 420 FWIYRDKYLITAVKSGLMIIDRQLALERITYEQILIRLQQGQKATQALLFAETITFSADE 479

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK-KNIPQLLRDIIDEIIDSSTTYT 528
                    +L  +G   ++    +  I  IP+ L++  ++P LLRDI+  ++D++T   
Sbjct: 480 NITFETILPELEAMGFDIDKLSAPSYTIAGIPSFLTEVGSVPDLLRDIVGYVVDNTTVG- 538

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
            ++  E I    A   + ++   + + E   L+  + +    +    G  T + L  +DI
Sbjct: 539 -KEIYEKIAIRTAKAYARKTHSNLNAQETEALIASLFQCRTPNYSPEGIKTVVILSDADI 597


>gi|157363591|ref|YP_001470358.1| DNA mismatch repair protein MutL [Thermotoga lettingae TMO]
 gi|167012379|sp|A8F560|MUTL_THELT RecName: Full=DNA mismatch repair protein mutL
 gi|157314195|gb|ABV33294.1| DNA mismatch repair protein MutL [Thermotoga lettingae TMO]
          Length = 549

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/596 (29%), Positives = 290/596 (48%), Gaps = 50/596 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI++L + I+++IAAGE+I      +KELIENS+DA + R+   +  GGKS  ++ DNG
Sbjct: 1   MKIKRLDKSIVSRIAAGEVITGVYSVVKELIENSIDAGADRIVVELINGGKSEIKVQDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  +++ +  + H TSKI    D   +++FGFRGEAL SI  +S  T+ S+   +N G
Sbjct: 61  EGMEKDDLLVCYESHTTSKIDSFQDIYTLNSFGFRGEALYSICQISKTTIFSKTASSNLG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I +    +   +PV +  GT V VRDLFF +PAR  FLKS  VE  +  +V  R  ++
Sbjct: 121 HEIEVVAGHLVYEKPVQIEKGTTVIVRDLFFNVPARRKFLKSNAVEARMAVEVFERFCLS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P ++   +  +   Y +   +      +RI  +  +  +++   +  +  ++ L G   
Sbjct: 181 HPHINLILTKDQQVVYNLPATT----LVQRIKALFPDIPMDSLKAIQSQWKDMELHGCAV 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P  N       + F+NGR V ++ + S I +AYA+ +    +PVV++ L + P+ +DVN
Sbjct: 237 SP-ANLRRKKAIFTFVNGRFVVNQLLQSAIYSAYADFLHQKEHPVVIVNLFLPPKDIDVN 295

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  ++F     +  F+  SI+  +              +I    ++   K    + 
Sbjct: 296 VHPQKIEVKFSRDEEVFRFVRDSIKSQLK-----------IPIIHHISRNTPAKVQKRQV 344

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                N +     +E  +   D                                + + YI
Sbjct: 345 EYKSPNAKFTTTSEEMLIPPEDF--------------------------KIIGIVRKRYI 378

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I +T D L IVD HAAHERLI+ KM    N        LL P  I+L E E ALI ++  
Sbjct: 379 IVETEDELFIVDFHAAHERLIYNKMLSSLNQN--DGTDLLIPVQIELRESELALIEKN-N 435

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L ++G   E    N + +++IP  L + ++ + + D IDEI      Y L++ ++ I+A
Sbjct: 436 VLKQIGFDYEII-KNQLIVKKIPTWLDQSDVKRFIIDSIDEIK-LIDIYGLEEVMKKIIA 493

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++C  ++R+  ++   +   L+RE+  N  S  C HGRP    +   +++  F R
Sbjct: 494 DISCKSALRTRDRLDLSQAKYLVREIFANKIS-TCPHGRPVMYSINFKELDSFFER 548


>gi|223983838|ref|ZP_03634003.1| hypothetical protein HOLDEFILI_01284 [Holdemania filiformis DSM
           12042]
 gi|223964201|gb|EEF68548.1| hypothetical protein HOLDEFILI_01284 [Holdemania filiformis DSM
           12042]
          Length = 667

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/672 (26%), Positives = 284/672 (42%), Gaps = 86/672 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N IAAGE++ERP   IKEL+EN+LDA+++R+E  I  GG    ++ DNG 
Sbjct: 3   KIQQLDAHLTNMIAAGEVVERPMGVIKELVENALDAKATRIEVNINQGGTELMEVIDNGV 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +  +RH TSKI  ++D   IHT GFRGEALPSI +VS+LTL++   +++   
Sbjct: 63  GMDREDACLCFERHATSKIKTTEDLWAIHTLGFRGEALPSIASVSNLTLLTNNGEDS--T 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I   +  S RP   N GT + V  LF   PARL  LKS   ET+LI DVI++ A++Y
Sbjct: 121 RVEIRYGQRQSARPYPCNQGTQITVNGLFQKTPARLKHLKSIPYETSLILDVIQKFALSY 180

Query: 180 PKVSFTFSTIKSNRYK---------MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           P V+F         ++         +       +   +  +V G+DF             
Sbjct: 181 PDVAFRLVHDGKEVFRSAGNGSLLEVMAIIYGRDLARQCIEVEGQDFD----YTVRGLMA 236

Query: 231 ITLQGYTGIPTFNRGNANQFYVFING---------------------------------- 256
           +  Q              +                                         
Sbjct: 237 LPAQTRASRNYMTVFINRRMIRSYRIQKAILEAYKNYIPQDRYPIVMLDIEMDSHLCDVN 296

Query: 257 --------RTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV--------- 299
                   R  +++ +   IR     T+        V+ +E    +V++           
Sbjct: 297 VHPSKWEIRLSKEQQLEFLIRDTLTRTLREHMQAPEVMRVETPREKVEMPQLFETPVVVP 356

Query: 300 -----------HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
                      +  +      +    R  I   + + I +    T    +  ++ +  + 
Sbjct: 357 ANQVREDSVEANEWRRQAALMSEQREREQIAAPLSREIPQDPEVTGKAEASAVLPAEPEA 416

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA------T 402
              KT +     S   T +      +  S +D LP  +P           +EA       
Sbjct: 417 LIKKTEVENREGSPLTTPKPTAKTSSADSLSDQLPEPEPLDPRVQQTEASAEALRSVPKQ 476

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +      AQ+H  YI++Q    L IVDQHAA ER+ FE+++Q F   +   Q LL P I
Sbjct: 477 TFPQMQVLAQMHGKYILAQDEHALYIVDQHAAQERVHFEEVQQRFLDQEPLMQELLVPII 536

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++      A + E +E L  + I  E FG N++  R++PA +S+ +    L+D++D +  
Sbjct: 537 LEGSASVAARLQEMNELLEPMHIHLENFGQNSLICRQLPAWMSEIDEQAFLQDVLD-LWK 595

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                  +D   + LAT+AC+ SIR  R +   EM  ++ ++        C HGRPTFI 
Sbjct: 596 DGREVRAEDLQRHRLATIACHHSIRFNRVLSIGEMQEVIEQLAHCEQPYHCPHGRPTFIT 655

Query: 583 LKLSDIEKLFGR 594
           +    + K F R
Sbjct: 656 ITEKQLIKEFQR 667


>gi|311281278|ref|YP_003943509.1| DNA mismatch repair protein MutL [Enterobacter cloacae SCF1]
 gi|308750473|gb|ADO50225.1| DNA mismatch repair protein MutL [Enterobacter cloacae SCF1]
          Length = 623

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/578 (27%), Positives = 264/578 (45%), Gaps = 42/578 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIRQEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQPEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +    RP A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMDVTVRPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +       G    R+  + G  F+ +A+ +  +  ++ L+G+ 
Sbjct: 181 ARFDVTINLNHNGKAVRQYRAVPEGGQKERRLGAICGVPFVEHALAIEWQHGDLALRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P +     A   Y ++NGR ++D+ I   IR A  + +  G  P  VL LEIDP QVD
Sbjct: 241 ADPQYTTAQLAEIQYCYVNGRMMRDRLINHAIRQACEDKLGAGEQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------------- 343
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   +             
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQVDAPLPLARESDDAQSPARYVPENRVA 360

Query: 344 ----------SFHQDNAPKTHLPKYA--------TSLTNTQEKLFLQENRLSTNDLLPSD 385
                     +  +  AP+   P  A         S     +  + ++       LL + 
Sbjct: 361 AGRNQFAEPVAAREAAAPRYTAPAPAGGSARSGGASAWPHAQPGYQKQQGTLYRQLLETP 420

Query: 386 DPTYSEDNDPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +           E          G     +  +  + +    L ++    A   L   ++
Sbjct: 421 EAGRKAPEAAPAEERLSGHSSSFGRVLTIVGGDCALLERDGRLSVLALPVAERWLRQAQL 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
             +     I +Q LL P  + +  GE A + +    L ++G++ +      + +R +P  
Sbjct: 481 SPERTD--ICAQPLLIPLRLKVSPGEQAALQQAQAVLAQIGVEIQS-DVQHVTVRAVPLP 537

Query: 504 LSKKNIPQLLRDIIDEIIDSS--TTYTLQDRIENILAT 539
           L ++N+  L+ ++I  +         TL   +   LA+
Sbjct: 538 LRQQNLQILIPELIGYLAQQPACDAGTLAQWLARNLAS 575


>gi|320013763|gb|ADV97334.1| methyl-directed mismatch repair protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 637

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/627 (25%), Positives = 276/627 (44%), Gaps = 69/627 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEE--IPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G++ ++  + +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + +
Sbjct: 61  CGISKDDLALALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQS 120

Query: 117 TGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
              Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+
Sbjct: 121 EAWQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRI 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A   V+   +       +            R++ + G  F+ +A+ +  +  ++ + G
Sbjct: 181 ALARFDVAINLNHNGKLIRQYRAAPDPAQHERRLASICGPAFLQHALAIAWQHGDLNIHG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +   P  +   +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QV
Sbjct: 241 WVADPAASHTLSEMQYCYVNNRMMRDRLINHAIRQAYQDRLNDAQQPAYVLYLDIDPHQV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN------ 349
           DVNVHPAK  +RF    ++ +FI Q++   + +      ++  +  + +           
Sbjct: 301 DVNVHPAKHEVRFHQARLVHDFIYQAVTAVLQQTNAPILNISEEGEVDAPRWQQENRVAA 360

Query: 350 -APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN--------------- 393
              K   P+ A S    Q     + +          +D  Y +                 
Sbjct: 361 GTNKYAQPEAAKSSAAEQAVARERSSARERAAPAYKEDHPYQKQQGELYRQLLQPSAAAK 420

Query: 394 ------------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                                      E     +Y  G         Y + +   G+ ++
Sbjct: 421 PATSPAAIPASSVSSPSIPVQRITQAEEPLHGDNYSFGRVLTVFPPCYALIEYQGGVALL 480

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
              A  ER   ++ +       +  Q LL P  I L + E A    H++ L  +GI+   
Sbjct: 481 SL-AVAERW-LKQAQLSPPEEGLRPQPLLIPLKITLDKNEIAACQNHEKLLITMGIELSV 538

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIR 547
               A  +R +   L ++N+ +L+ +++  +              + LAT +A + GS  
Sbjct: 539 EQGRA-TLRAVSLPLRQQNLQKLIPELLGYLSQHEEISP------DTLATWLARHLGS-- 589

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCN 574
                   +  +LL E+E+      C 
Sbjct: 590 EHEVWNVSQAIQLLTEVERL-----CP 611


>gi|329919572|ref|ZP_08276561.1| DNA mismatch repair protein MutL [Lactobacillus iners SPIN 1401G]
 gi|328937377|gb|EGG33799.1| DNA mismatch repair protein MutL [Lactobacillus iners SPIN 1401G]
          Length = 625

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 289/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNEAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        +    +  T     
Sbjct: 359 DTSRIPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+       ++ RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQLQ-IKAVIDLILAHINAPIVKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|313206566|ref|YP_004045743.1| DNA mismatch repair protein mutl [Riemerella anatipestifer DSM
           15868]
 gi|312445882|gb|ADQ82237.1| DNA mismatch repair protein MutL [Riemerella anatipestifer DSM
           15868]
 gi|315023438|gb|EFT36446.1| DNA mismatch repair protein MutL [Riemerella anatipestifer RA-YM]
 gi|325335986|gb|ADZ12260.1| DNA mismatch repair enzyme (predicted ATPase) [Riemerella
           anatipestifer RA-GD]
          Length = 598

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/606 (26%), Positives = 278/606 (45%), Gaps = 32/606 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+++RP+  +KELIEN++DA++++VE +I   GK+  Q+ DNG G
Sbjct: 5   IRLLPDYVANQIAAGEVVQRPASVVKELIENAIDAKATKVELIIREAGKNLIQVVDNGAG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI  ++D   I T GFRGEAL SI AV+ + L ++  ++  G  
Sbjct: 65  MSETDARMAFERHATSKIYATEDIFKIATKGFRGEALASIAAVAQVELKTKKEEDIVGTN 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G ++     V  + G+   V++LF+ +PAR  FLKS  VE   I D   R+A+A+ 
Sbjct: 125 IYIEGGELQFQEAVQTSEGSNFAVKNLFYNVPARRKFLKSNNVEFRHIIDEFHRVALAHE 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F+        +K+       +  +RI  + G       + + E  + + L GY   P
Sbjct: 185 DIEFSLYHNDEEIFKLR----KASLLQRIVDIFGRKLQPLLIPIKEDLDWVKLNGYVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              + +  + + F+NGR  +  ++   ++ A+   +  G  P   L LEIDP ++DVN+H
Sbjct: 241 EGAKKSRGEQFFFVNGRFFRSAYLNKAVQEAFDGLLQQGYNPSFFLYLEIDPEKIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F + T+I   I  +I+K++    +S S    K    S  Q    ++H PK   
Sbjct: 301 PQKTEIKFEDETLIFALIRSTIKKSLGVYNVSPSLDFDKDESQS--QLLGLQSHYPKATL 358

Query: 361 SLTNTQEK-----------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-HYQLGI 408
           S++N+  K            F QE    +  +  ++  + S                   
Sbjct: 359 SISNSSYKAPSIQVDRDYNPFQQERVKPSESIALTELYSQSITTAEPSRINLFEDEDFDE 418

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              ++   Y +    +  +++D    H  ++ E+ +Q   +       LL      L E 
Sbjct: 419 DLMRLPNGYWLYNRGEDTLMLDLGRMHSVVVSERRKQKKETGVGQ--KLLFSIEYLLNEM 476

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           E        + L +LG + E    N + I  +P  L +K + + L   + E++D  T   
Sbjct: 477 EKNKYRSIKKYLPQLGFEMELGDDNVLRINAVPNGLKEKQVNEFLEK-LFEVLDYKTEEE 535

Query: 529 LQDRIEN---ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
                EN    +   +     R        E+ +++++            G+  +I L L
Sbjct: 536 FMAYYENQWTKINAKS-----RF-DFFYKTEVEQMIKDFSDLGFPEYTPSGKKCYIALPL 589

Query: 586 SDIEKL 591
            D++  
Sbjct: 590 EDLKNK 595


>gi|238918366|ref|YP_002931880.1| DNA mismatch repair protein MutL [Edwardsiella ictaluri 93-146]
 gi|259509931|sp|C5BDM9|MUTL_EDWI9 RecName: Full=DNA mismatch repair protein mutL
 gi|238867934|gb|ACR67645.1| DNA mismatch repair protein MutL [Edwardsiella ictaluri 93-146]
          Length = 639

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/623 (26%), Positives = 279/623 (44%), Gaps = 64/623 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  GGIGKAELALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLTMTSRPEGQAEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++   V+P A   GT VEV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVMVKPSAHPVGTTVEVLDLFYNTPARRKFLRTEKTEFAHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++ T         +            R+  + G  F+ +A+ L  + +E+ + G+ 
Sbjct: 181 ARFDITLTLQHNGKTVRQYRAVKEGDARERRLGAICGPVFVQHALALTWRHDELAIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++NGR ++D+ I   IR AY + +     P  VL LEIDPRQVDV
Sbjct: 241 AAPQAIRQIGELQYCYVNGRMMRDRLITHAIRQAYQDRLSDEMPPAYVLYLEIDPRQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++ + + +  ++++       IS   +D  P+    +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVVEVLQQAQVASAHDDPTPAISGAARDEEPRGVENR 360

Query: 358 -----------YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN------------- 393
                       ++ + +      +   R+   D+    +    +               
Sbjct: 361 ASAGENRFNRPASSPVASAPRPAHVAAPRMPAGDIFRRREGELYQRLLAANPAPAAETDS 420

Query: 394 --------------------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                                   E+ A     G           +++   G+ +V    
Sbjct: 421 AFVAAPGAPVTVAGPPAVAVSTAAENGAPGDSFGRVLTLCADGVALTECRSGVALVS--L 478

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
            H R    + +       + +Q LL P  + L   E   +      L ++G++ +    +
Sbjct: 479 FHARRCLLRAQLQPPDEGLKAQPLLVPLRLTLEAAERQALKTQQPLLQQMGLRLQPERQH 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSS--TTYTLQDRIENILATMACYGSIRSGRK 551
           A+ +  +P  L ++N+P+L+  ++  +  +S     +L D +         + +  +   
Sbjct: 539 AL-LHAVPLPLRQQNLPRLIPQMLRYLATASVCDAASLADWLAAHW-----HSADEA--P 590

Query: 552 MQSIEMNRLLREMEKNPNSSQCN 574
               +  +LL ++E+      C 
Sbjct: 591 WTVAQAVQLLADLERL-----CP 608


>gi|309972799|gb|ADO96000.1| DNA mismatch repair protein MutL [Haemophilus influenzae R2846]
          Length = 637

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/578 (26%), Positives = 269/578 (46%), Gaps = 65/578 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIVRQYRPAFDLNQQLKRVAVICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISYALNNQEQLNWHTEQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLFLQENRL------------------------------------- 376
             P  A +  N+    + ++ +                                      
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLYAE 420

Query: 377 ----------------STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
                           +  ++  +     S+    +            A + I    ++ 
Sbjct: 421 LLRTLPPTAQKDISNTAQQNISDTAQQNISDTAKIISTEIIECSSHLRALSLIENRALLL 480

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           Q      ++      E+L   + +      +I  Q LL P +  L E +     ++ ++ 
Sbjct: 481 QQNQDFFLLSL----EKLQRLQWQLALQQIQIEQQPLLIPIVFRLTEAQFQAWQQYSDNF 536

Query: 481 HRLGIK-AERFGPNAIAIREIPAILSKKNIPQLLRDII 517
            ++G +  E      + + ++P +L  +N+ + +  ++
Sbjct: 537 KKIGFEFIENQAQLRLTLNKVPNVLRTQNLQKCVMAML 574


>gi|312870739|ref|ZP_07730846.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093751|gb|EFQ52088.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 3008A-a]
          Length = 625

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 287/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +  +    ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELTNQQK---QLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNEAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        +    +  T     
Sbjct: 359 DTSRTPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQLQ-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|259501312|ref|ZP_05744214.1| DNA mismatch repair protein HexB [Lactobacillus iners DSM 13335]
 gi|302190964|ref|ZP_07267218.1| DNA mismatch repair protein [Lactobacillus iners AB-1]
 gi|259167282|gb|EEW51777.1| DNA mismatch repair protein HexB [Lactobacillus iners DSM 13335]
          Length = 625

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 287/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +  +    ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELTNQQK---QLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDANESKQTKLDQLEFNLNEAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        +    +  T     
Sbjct: 359 DTSRIPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQIQ-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|238855607|ref|ZP_04645908.1| DNA mismatch repair protein MutL [Lactobacillus jensenii 269-3]
 gi|260665333|ref|ZP_05866181.1| DNA mismatch repair protein mutL [Lactobacillus jensenii SJ-7A-US]
 gi|282933019|ref|ZP_06338413.1| DNA mismatch repair protein MutL [Lactobacillus jensenii 208-1]
 gi|313473092|ref|ZP_07813576.1| DNA mismatch repair protein HexB [Lactobacillus jensenii 1153]
 gi|238831751|gb|EEQ24087.1| DNA mismatch repair protein MutL [Lactobacillus jensenii 269-3]
 gi|239528671|gb|EEQ67672.1| DNA mismatch repair protein HexB [Lactobacillus jensenii 1153]
 gi|260560837|gb|EEX26813.1| DNA mismatch repair protein mutL [Lactobacillus jensenii SJ-7A-US]
 gi|281302873|gb|EFA95081.1| DNA mismatch repair protein MutL [Lactobacillus jensenii 208-1]
          Length = 621

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/630 (26%), Positives = 291/630 (46%), Gaps = 52/630 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++S++E      G     + DNG 
Sbjct: 3   KIHELSETLTNQIAAGEVIERPASVVKELVENAIDAKASQIEIEFIDAGLKEVIVRDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++ +A +RH TSKIS   D   I T GFRGEAL SI AVSH  +++       G 
Sbjct: 63  GIASEDLDLAFRRHATSKISKERDLFKIATLGFRGEALASIVAVSHTEVITST-DGIKGV 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +   +G +  S    A   GT ++V DLF+  PARL +LKS + ET  I D++ R+A+ +
Sbjct: 122 KAEFAGGEKLSEETHASTKGTEIKVSDLFYNTPARLKYLKSPRTETMKIVDIVNRLALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            +++FT          +     N N  + ++ + G     + +E +++  +  + G    
Sbjct: 182 SEIAFTLKNEGKL---LLKTPGNNNLRQDLANIYGRFIAKDMIEFSKEDPDFKVSGLLST 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + +NGR +++  +   I   Y   I  GRYP+ V+L+E+DP  VDVNV
Sbjct: 239 PETTRSNRNFVSILLNGRYIKNYQLTKAILAGYGSKIAQGRYPIAVILIELDPFLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I + I  A+ +     S++ +           A   +     
Sbjct: 299 HPTKEQVRLSKEKELSRLITEGISTALLENTSQVSALANLNKEVDRQDQLAFNLNKNVVD 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV----------------------- 396
           T+ T  +E+   +E ++S  ++   D     ED+  V                       
Sbjct: 359 TTRTY-EEQPAKEEKQISDQEVSYVDLNQVREDDRYVLTASWDKNVAIQVSLTPFTKKAN 417

Query: 397 ----------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
                     +E  A        C Q+   Y+++   D L ++DQ +A   L +  + + 
Sbjct: 418 KKEDNLLTKGDEKIAYSLPYLTYCGQVGA-YLLASNEDDLYLIDQVSAERALKYCDILKQ 476

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
              T     TLLTP ++D    +   I  H  +L  +G+  E FG N++ +   P  L  
Sbjct: 477 MQETDYQQ-TLLTPLVLDFGSEDYLEIKNHLSELREIGLILEDFGQNSLLLPSYPLWLKD 535

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC---YGSIRSGRKMQSIEMNRLLRE 563
           ++    +R+++D  +      + +D +  I A++A       +R   K+       +L +
Sbjct: 536 ESERN-IRELLDLFL-----TSKKDNLAGIKASLAKAEVKRRVRK-EKLTKEGAQSMLEQ 588

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           +    +      G+   +K+  ++++ +F 
Sbjct: 589 LASLADPYYDPFGQLIIVKITDTELDHMFK 618


>gi|307150090|ref|YP_003885474.1| DNA mismatch repair protein MutL [Cyanothece sp. PCC 7822]
 gi|306980318|gb|ADN12199.1| DNA mismatch repair protein MutL [Cyanothece sp. PCC 7822]
          Length = 569

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 164/612 (26%), Positives = 272/612 (44%), Gaps = 71/612 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L   +IN IAAGE+I+     ++EL+EN+LDA ++R+   +      + Q+ DNG
Sbjct: 1   MNIKSLPPDVINLIAAGEVIDSLGAVVRELVENALDAGATRIVISLYPD-LWWIQVADNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR-PPQNNT 117
            GM+ E++      H TSKI   DD  NI + GFRGEAL SI  V+ L + SR    ++ 
Sbjct: 60  RGMSLEDLKRCSNAHSTSKIRSRDDLWNITSLGFRGEALHSIAQVAILEVASRFTIGHDA 119

Query: 118 GAQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           G ++  +    +     A    GTIV V +LF  +P R   L     +   I  +I  +A
Sbjct: 120 GWRVRYNAVGEAESLETAAIAPGTIVTVSNLFGNLPVRRKGLPPMTQQLKAIQTLIHHIA 179

Query: 177 IAYPKVSFTFSTIKSNRY-------------KMNFQSTNGNFPERISQVIGEDFINNAVE 223
           + +P V++       N +             ++  +    +    I  V      +    
Sbjct: 180 LCHPHVTWCLEQNDRNWFNISPGKSALQILPQLLKRVHQNDLHLLIQTVETPALNDLQTN 239

Query: 224 LNEKSNEITLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP 282
           L     E  ++   G+P   +R  A+   V INGR V+   +  +I TA+A T+P  R+P
Sbjct: 240 LPPMVEESKVELVIGLPDRCHRRRADWVKVAINGRMVRLPELEQSIFTAFARTLPRDRFP 299

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI 342
           V  + ++  P  +D N HPAK+ I   +    +  I QSI +A+   G S S        
Sbjct: 300 VCFVHVKTCPSHIDWNRHPAKTEIYLHSLAFWQEKIAQSIDEALKMNGDSLSD------- 352

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
                    K    +    L  ++EK   + +          D                 
Sbjct: 353 ---------KASNHRVVKLLKASEEKSPYKVDPKPQTQTRHQDSIGL------------- 390

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
                 A AQ+   YI+++ ++GL +++QH AHER+++E+++ D+    + +  +L    
Sbjct: 391 --LDLQAVAQVRNTYIVAEHSNGLWLIEQHIAHERVLYEQLQDDWKIVFLDTPIVLNQLT 448

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                          E L RLG++ E FG    A+R  P +LSK+      +D  + +I+
Sbjct: 449 SS-----------QVEQLQRLGLEIEPFGEALWAVRSAPEMLSKR------QDCSEALIE 491

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            S    LQ      +AT AC  +IR+G  +   +M  +L + ++  N   C HGRP F+ 
Sbjct: 492 LSWGGDLQTAQ---VAT-ACRSAIRNGTTLSLAQMQSILDQWKRTRNPRTCPHGRPIFLS 547

Query: 583 LKLSDIEKLFGR 594
           L+ + + + F R
Sbjct: 548 LEETSLARFFRR 559


>gi|312875209|ref|ZP_07735222.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089316|gb|EFQ47747.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 2053A-b]
          Length = 625

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 171/632 (27%), Positives = 291/632 (46%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R    + +   I+++I +A+       +S             ++  + ++   
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNEAVV 358

Query: 351 PKTHLP-KYATSLTNTQEKLFLQEN--------------------------RLSTNDLLP 383
             + +P +++     T +   ++E+                          +  T     
Sbjct: 359 DTSRIPVEFSMPNDLTDDSSKIKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQLQ-IKAVIDLILAHINAPIDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|309803565|ref|ZP_07697657.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164313|gb|EFO66568.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 11V1-d]
          Length = 625

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 287/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIMVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +  +    ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELTNQQK---QLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDANESKQTKLDQLEFNLNEAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        +    +  T     
Sbjct: 359 DTSRIPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQIQ-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|256821741|ref|YP_003145704.1| DNA mismatch repair protein MutL [Kangiella koreensis DSM 16069]
 gi|256795280|gb|ACV25936.1| DNA mismatch repair protein MutL [Kangiella koreensis DSM 16069]
          Length = 586

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 152/547 (27%), Positives = 277/547 (50%), Gaps = 11/547 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KLS  + NQIAAGE++ERP+  +KEL+EN++DA++ R++  I  GG    ++TDNG
Sbjct: 1   MAIHKLSPLVANQIAAGEVVERPASVVKELLENAIDAKADRIQIDIERGGTRLIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +E+ +A+ RH TSKI  SDD   I+T GFRGEAL SI +V+ L L SRP   + G
Sbjct: 61  EGISRDELELALARHATSKIEHSDDLKAIYTLGFRGEALASISSVAKLKLSSRPQAQDMG 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P ++  GTIVEVRDLFF  PAR  FL++E+ E   I + ++R+A+
Sbjct: 121 WSAIAEGLDMQVKLQPQSLPAGTIVEVRDLFFNTPARQKFLRAERTEFVHIEETVKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P V+ T         ++     +    +RI  ++G  F+  A++L+   +   L G+ 
Sbjct: 181 GSPHVAITLRHNSKVVKRVPAAHNSEQHQQRIGSILGASFLREAIKLDSTIDATRLYGWL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               +++ ++   YVF+NGR V+D+ +   IR AY + +P GR P  VL LE++  QVDV
Sbjct: 241 SPVDWHQSSSLGQYVFVNGRAVRDRTLNHAIRQAYHDRLPAGRMPAYVLYLELEASQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG----ISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF N   + +F+  ++++A+ ++G    ++  +V   + +      ++   
Sbjct: 301 NVHPTKHEVRFSNGRQVHDFMSHAVEEALLEQGEMLELNQHAVGDNEELVYMRPSHSVAQ 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
              K     T   +     + R               +     ++ + +          +
Sbjct: 361 PTTKDDPYFTPRHKAGAFSQQRADHVADSSPAQYRPQQSCQWPQKPKVSSKLASGNSWVL 420

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H   ++ QT +G+  +D  A   + I + +  ++   ++  + +L P  + +     +  
Sbjct: 421 HDRLLLQQTEEGIKALDLKAYFCQHISDCLHSEWQQGEVKQRLMLFPLRLGIPADNVS-- 478

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            E      + G +    GP  + +R++P+ +   ++ Q L++++      S   +  D  
Sbjct: 479 DEFINQWQKAGFEMTLTGPKTLVVRKVPSCVLHIDLQQWLQEVV--YQAVSKNLSTADWQ 536

Query: 534 ENILATM 540
           + ++ ++
Sbjct: 537 KQLMKSL 543


>gi|325911949|ref|ZP_08174352.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners UPII 143-D]
 gi|325476251|gb|EGC79414.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners UPII 143-D]
          Length = 625

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 288/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNDAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        +    +  T     
Sbjct: 359 DTSRTPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQLQ-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|315653063|ref|ZP_07905991.1| DNA mismatch repair protein HexB [Lactobacillus iners ATCC 55195]
 gi|315489598|gb|EFU79232.1| DNA mismatch repair protein HexB [Lactobacillus iners ATCC 55195]
          Length = 625

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/632 (26%), Positives = 282/632 (44%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIMVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-------------------- 339
           HP K  +R    + +   I+++I + +       +S+ +                     
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNEAVV 358

Query: 340 ----------------KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
                              S   +D+     L              + +  +  T     
Sbjct: 359 DTSRIPVEFSMPNDLTDDSSKIKEDDTTFVSLKHPRQDEHYLVTTTWDENVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASQLSSEVTTSSEQILVNRLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQIQ-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|325913762|ref|ZP_08176123.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners UPII 60-B]
 gi|325476962|gb|EGC80113.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners UPII 60-B]
          Length = 625

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 172/632 (27%), Positives = 288/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS K+ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSKLTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R    + +   I+++I + +       +S             ++  + ++   
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNEAVV 358

Query: 351 PKTHLP---KYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
             + +P        LT+   K+                        + +  +  T     
Sbjct: 359 DTSRIPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDENVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASQLSSEVTTSSEQILVNRLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQLQ-IKAVIDLILAHINAPIDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|313885802|ref|ZP_07819545.1| DNA mismatch repair protein, C-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924706|gb|EFR35472.1| DNA mismatch repair protein, C-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 646

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/648 (22%), Positives = 274/648 (42%), Gaps = 64/648 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+ENS+DA ++++   +   GK   ++ D+G G
Sbjct: 5   IHLLPDSIANQIAAGEVIQRPASMLKELVENSIDAHATQITIELQDAGKELMRVIDDGVG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  DD   + + GFRGEAL SI AV+ + L++R   ++ G +
Sbjct: 65  MSPLDARMAFERHATSKISSVDDLFTLRSMGFRGEALASIVAVAQIELVTRQADSDIGYK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S  P     GT + V++LF+ +PAR  FLK  + E   I     R+A+ YP
Sbjct: 125 LLINGSEVISSSPTVAEVGTSITVKNLFYNVPARRRFLKGSETELRHIYRQFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT  +       +       +   RI  ++G+ +    + +  +     + G+  +P
Sbjct: 185 EIAFTLYSEGKLIRNLP----KSDLQHRIVDLLGKSYSKQLIPIEYQGPLANVSGFITLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    Q + F+NGR ++  +    +   + + I  G  P   +  ++DP ++DVN+H
Sbjct: 241 RDAKRRGAQQFFFVNGRYMKHPYFHRAVMNVFEDLIAPGSQPNYFIYFQVDPSRIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------------- 347
           P K+ I+F +   I   ++  +++ ++      +   S   +                  
Sbjct: 301 PTKTEIKFLDEQAIFKLLMVVLREHLSTTSAMPAITFSTDQLIEIPAYDATRQSSSTLQP 360

Query: 348 ------------------DNAPKTHLPKYATSLTNTQEKLFLQ------ENRLSTNDLLP 383
                             D  P   L   ++      E           E+ LST+    
Sbjct: 361 PPVQIDPEYNPFKAISTDDQRPLDPLSSMSSGSPAHWENFIDDFQQRRGESTLSTSQPSG 420

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +              S               + Y+ +  +D L ++    A  R+ +E+ 
Sbjct: 421 AAPTAIDPLFTVSPSSPQPAANSTNLVYTFQERYLFTTMSDRLAVIQIDRALLRIYYEQQ 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER-------FGPNAIA 496
                     +Q LL  E + L      +  E  E L ++G +             N   
Sbjct: 481 IATLTLEPDQAQPLLFAEELSLPSEIYPMHHELVESLRQIGFEITPQEEASTGTDENVYL 540

Query: 497 IREIPAILSKKNIPQLLR----DIIDEI--IDSSTTYTLQDRIENI-LATMACYGS---I 546
           I  +P  L    +  ++     + +D++   +++T  T  +++  + L++ A   +   +
Sbjct: 541 ITSVPKPLRPIGVADMITQTLGEYLDQLEREETNTELTQAEQLAQLFLSSEALRQASELV 600

Query: 547 RSGRKMQSIEMN--RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           R    + +      +++ ++   PNS     GR   + L   +I+K F
Sbjct: 601 R--HTLHARAAQPSQIISDLFLTPNSQFDPLGRSIMVSLTSEEIDKWF 646


>gi|325577874|ref|ZP_08148107.1| DNA mismatch repair protein MutL [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160304|gb|EGC72431.1| DNA mismatch repair protein MutL [Haemophilus parainfluenzae ATCC
           33392]
          Length = 615

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 169/578 (29%), Positives = 286/578 (49%), Gaps = 47/578 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++   I  GG S  +I DNG
Sbjct: 1   MAIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIHIDIENGGASLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  SGIPKEELRLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTAEQNEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G ++ ++ +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGREMETIIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++FT +       +    +      +R++ + G+DF+ +A+ ++ K +++ L G+ 
Sbjct: 181 AKFNIAFTLTHNGKIVRQYRPAANEEQQLKRVATICGDDFVQHALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R   +  Y +INGR V+DK I   IR AYAE +   +YP  VL ++++P  VDV
Sbjct: 241 ATPEFTRSQNDLSYCYINGRMVRDKVITHAIRQAYAEHLHTEQYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-----KKGISTSSVLSKKMISSFHQDNAPK 352
           NVHP K  +RF    +I +FI Q +  A+N     +  +  +   +++  +S+      K
Sbjct: 301 NVHPTKHEVRFHQARLIHDFICQGVTNALNAIPQAELDLMPAMNEAREPSASYQPHYETK 360

Query: 353 THLPKYATSLTNT---QEKLFLQENRLS-TNDLLPSDDPTYSEDNDPVEE---------- 398
            +      ++  +   Q +    ENR   +N         Y E    +E+          
Sbjct: 361 PNRAAAGQNIFASHYNQPREKQSENRPHFSNRSEFVPSYGYREQPTKIEQRLYGELVRPT 420

Query: 399 ---------------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
                           + ++     A A I    ++ Q      ++   A  + L +E  
Sbjct: 421 EASQVLTTPVVEQQLPQTSNAGYLRALALIENKALLLQQNQQFYLMSL-AKLQTLNYE-- 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-AERFGPNAIAIREIPA 502
                  +I+ Q LL P I  L E +     +      + G +  E      + + ++PA
Sbjct: 478 -LTLQQGEISQQPLLIPIIFRLDEKQFEQWQKQKAYFQQSGFEFIENEAQLRLTLNKVPA 536

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
           IL  +N+ + +  ++ E +++     + D +  +  T+
Sbjct: 537 ILRTQNLQKCVVSLLAEHLEN-----MPDFLTALCHTL 569


>gi|225848265|ref|YP_002728428.1| DNA mismatch repair protein MutL [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644077|gb|ACN99127.1| DNA mismatch repair protein MutL [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 517

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/596 (29%), Positives = 274/596 (45%), Gaps = 82/596 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIR L ++++N+IAAGE++ERPS  +KELIENSLD  +S +E  I   GK    + DNG
Sbjct: 1   MKIRPLPDEVVNKIAAGEVVERPSSVLKELIENSLDTSASLIEVSIEKAGKRLISVFDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++  AV+RH TSKI   +D  +I T+GFRGEAL SI +VS LT+ SR   +  G
Sbjct: 61  EGIEKQDLINAVKRHYTSKIKALEDLYSIITYGFRGEALSSISSVSRLTITSRTKNDLHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +Q+++ G KI S   V    GT VEV+DLFF + AR  FLKSE  E      V    AIA
Sbjct: 121 SQLSLEGGKILSFSEVGCPVGTKVEVKDLFFNVLAREKFLKSENTENIHNVSVFLNYAIA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P   F  S      Y +       +  ER++ + G+DF+ N   +  ++    + G+  
Sbjct: 181 NPDKHFKLSIDSKQVYNLYP----SSLKERLTLIYGKDFVENLKYVEYENYLGKVYGFVS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           + +     +   ++FIN R V+  FI S ++    +          +L  ++ P  VDVN
Sbjct: 237 LDSVKNKKS---HIFINKRPVKSPFISSIMKKKIGDN-------FFILFFDLPPYFVDVN 286

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  ++F+   +I + I   ++  +N+    T S    K   S +Q    K  +   
Sbjct: 287 VHPAKIEVKFQKEKVIVDMIESLLKDNLNEFKAFTVSYQELKQPKSTYQTKEGKFEI--- 343

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                                           ED   V  S++  Y +    A     Y 
Sbjct: 344 ----------------------------IGQIEDTFIVAYSDSYVYFIDQHVANERVMYE 375

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I                       + Q   S KI SQ LL+P  +DL   +  ++ E ++
Sbjct: 376 II----------------------LSQLKESKKIPSQRLLSPFKLDLSPKQEFILKEIND 413

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG K E    N   I  IP  +      + L +I++   D +         E + +
Sbjct: 414 TLETLGFKVE----NNYLI-SIPYNMQISKAVETLYEIVESYPDITH--------EKVAS 460

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++C  SI +G ++   +   L++   K  N + C HGRP + K+ + +I+K  GR
Sbjct: 461 SLSCRMSITAGDRLTLEKAQELIKNWIKTENPNVCPHGRPIYYKISIDEIKKAVGR 516


>gi|309806010|ref|ZP_07700036.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|308167613|gb|EFO69766.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 03V1-b]
          Length = 625

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/632 (27%), Positives = 289/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIMVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++ +I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADDTRSTRNFITLLLNTRYVKNYRLVQSIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ---------- 347
           HP K  +R    + +   I+++I +A+   +  I++    ++   +   Q          
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNEAVV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKL------------------------FLQENRLSTNDLLP 383
           D +           LT+   K+                        +    +  T     
Sbjct: 359 DTSRIPVEFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQIQ-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|167856013|ref|ZP_02478758.1| DNA mismatch repair protein [Haemophilus parasuis 29755]
 gi|167852852|gb|EDS24121.1| DNA mismatch repair protein [Haemophilus parasuis 29755]
          Length = 638

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/549 (28%), Positives = 272/549 (49%), Gaps = 32/549 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 33  IQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATQIQIDIEKGGSQLIRIRDNGCG 92

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKI+  +D  +I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 93  IGKQDLALALARHATSKIATLEDLESILSLGFRGEALASISSVSRLTLTSRPEYQAEAWQ 152

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 153 AYAQGREMEVEIKPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFAHIDEVVRRIALAK 212

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V+FT +  +         +T       +R++ + G++FI  +V ++ + +++ + G+ 
Sbjct: 213 PNVTFTLTHNEKKVRYYKAVATQQLEQQQKRVATICGDEFIQQSVHIDWQHDDLHIYGWV 272

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P+  R   +  Y ++NGR ++DK I   IR AY E +P   YPV VL L++DP  VDV
Sbjct: 273 GSPSLARVQNDLCYSYVNGRMMRDKTINHAIRQAYGERLPKDHYPVFVLFLDLDPSHVDV 332

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF------------ 345
           NVHPAK  +RF    ++ +FI Q +  A+  +     +    + + ++            
Sbjct: 333 NVHPAKHEVRFHQSRLVHDFIYQGVLNALEDQHHLPLTTNVSEALPNYIADTNRVASGQN 392

Query: 346 -----HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-- 398
                +++    +       S +NT+     +  +    +LL +      + ++PV++  
Sbjct: 393 IFAHSYREPRSTSSTHAERQSYSNTRSSGVSKNEQKWYGELLSTSPMQDYKRSEPVQDLP 452

Query: 399 -----SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                +                  ++ Q    +   +           +++      K  
Sbjct: 453 KTAKITPLVEPIAEPVTPYAQALAVVKQKALLMKQGETFYLLSLEKLAQLKLQAELAKRE 512

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAIREIPAILSKKNIP 510
           +Q LL P  + L E + A   +    L  LG   +     G   + I+++P  L ++N+ 
Sbjct: 513 NQALLIPLSLTLDEQQTASWQQSQTALADLGFDIQTKQWQGQTRLTIQKVPTCLREQNLQ 572

Query: 511 QLLRDIIDE 519
           QLL  + ++
Sbjct: 573 QLLFSLFNQ 581


>gi|312872850|ref|ZP_07732912.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091584|gb|EFQ49966.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 625

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/632 (27%), Positives = 288/632 (45%), Gaps = 52/632 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS K+ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSKLTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++       G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GGVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + VRDLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDGNKVKQEAIASPQGTKIVVRDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +  +    ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELTNQQK---QLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADETRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R    + +   I+++I + +       +S             ++  + ++   
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNEAVV 358

Query: 351 PKTHLP-KYATSLTNTQEKLFLQEN--------------------------RLSTNDLLP 383
             + +P +++     T +   ++E+                          +  T     
Sbjct: 359 DTSRIPVEFSMPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDENVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASQLSSEVTTSSEQILVNRLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRL 560
           L   +  Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +
Sbjct: 538 LENCDQLQ-IKAVIDLILAHINAPIDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEM 591

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           L  +  + N      G+    K+  +D+ KLF
Sbjct: 592 LTSLSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|209696185|ref|YP_002264115.1| DNA mismatch repair protein [Aliivibrio salmonicida LFI1238]
 gi|238058930|sp|B6EMQ9|MUTL_ALISL RecName: Full=DNA mismatch repair protein mutL
 gi|208010138|emb|CAQ80463.1| DNA mismatch repair protein MutL [Aliivibrio salmonicida LFI1238]
          Length = 652

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/634 (25%), Positives = 282/634 (44%), Gaps = 77/634 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIEKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIPKEELTLALSRHATSKITTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT ++V DLFF  PAR  FL++++ E   I ++++R+A+
Sbjct: 121 WSAHAEGRDMEVKLKPAAHPVGTTIDVVDLFFNTPARRKFLRTDKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   ++        +  +     T     +R++ V G  F+ +A+E+  +  ++   G+ 
Sbjct: 181 SRLDITINLRHNGKSVRQYRAAQTKMQVEKRLAAVCGASFLQHALEVELEHGDLIFHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   IR  Y  ++   +Y   +L +EI+P  VDV
Sbjct: 241 SSPEGARAQGDVQYCYVNGRMMKDKLINHAIRQGYESSLSTNQYAAYILFIEINPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------------------ 333
           NVHPAK  +RF    ++ +FI Q+I  A+ +                             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAIYGALQQAASLPEVTTTSDIEMDRESYFPPMKDYVR 360

Query: 334 -----------------------SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
                                  ++       SS    +  K  +PK   S   +Q +L 
Sbjct: 361 QSSLPLTDAHIENKSKQLKEAIEATPSYPNKASSDEWVSKAKPSMPKAYQSEKPSQRELN 420

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL---------------GIACAQIHQ 415
             ++ L+T D           +    + SEA H  +               G   + + +
Sbjct: 421 NYQHLLTTRDREDKTSNFEVNEVRIPKISEAKHNTVVVPQLKSAVSTSMLLGKVLSVVDK 480

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            + + Q  + L +VD   A     + ++    +   + +Q LL P  I + +  C  + E
Sbjct: 481 VFGLLQLGNQLQLVDLRYAEFIKSYGQLNSAHHEV-LKAQPLLIPLSIGIDKDICNKLTE 539

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT--YTLQDRI 533
           +   L +LGI  +     ++ +  +   + ++N+ QL+ +++  I   + +    +    
Sbjct: 540 YQGILKQLGIDLKVKNNESLIVMAVCQPIRQQNLQQLIPNLLRYIYQINPSLDQVISWLS 599

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             +    ACY S          +  +L+ E+E+ 
Sbjct: 600 HQVQHDEACYSS---------AQAIQLVMELEQL 624


>gi|309809694|ref|ZP_07703550.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170054|gb|EFO72091.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 625

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/629 (26%), Positives = 286/629 (45%), Gaps = 46/629 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIVVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++    +  G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GDVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + V+DLF+  PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDSNKVKQEAIASPQGTKIVVKDLFYNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +  +    ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELTNQQK---QLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   N   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNV
Sbjct: 239 ADETRSTRNFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------VLSKKMISSFHQDNA 350
           HP K  +R    + +   I+++I + +       +S             ++  + ++   
Sbjct: 299 HPTKQEVRLSKESELARLIVRTIDQVLGATEHEIASLDNATESKQTKLDQLEFNLNEAVV 358

Query: 351 PKTHLP-KYATSLTNTQEKLFLQEN--------------------------RLSTNDLLP 383
             + +P +++     T +   ++E+                          +  T     
Sbjct: 359 DTSRIPVEFSMPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPF 418

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     SE     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+
Sbjct: 419 SASSLSSEVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKL 477

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                +     QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  
Sbjct: 478 LLQMQAENNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLW 537

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L   +  Q ++ +ID I+        + RIE     +A    IR  + + S+EM  +L  
Sbjct: 538 LENCDQIQ-IKAVIDLILAHINAPLDKIRIELAKKNVATKH-IRR-KSLNSLEMVEMLTS 594

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           +  + N      G+    K+  +D+ KLF
Sbjct: 595 LSNSSNPYHDPFGKIIIAKISENDLRKLF 623


>gi|332300228|ref|YP_004442149.1| DNA mismatch repair protein mutL [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177291|gb|AEE12981.1| DNA mismatch repair protein mutL [Porphyromonas asaccharolytica DSM
           20707]
          Length = 646

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/648 (21%), Positives = 272/648 (41%), Gaps = 64/648 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + I NQIAAGE+I+RP+  +KEL+EN++DA ++++   +   GK   ++ D+G G
Sbjct: 5   IHLLPDSIANQIAAGEVIQRPASMLKELVENAIDAHATQITIELQDAGKELMRVIDDGVG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKIS  DD   + + GFRGEAL SI AV+ + L++R   ++ G +
Sbjct: 65  MSPLDARMAFERHATSKISSVDDLFTLRSMGFRGEALASIVAVAQIELVTRQVDSDIGYK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I+G ++ S  P     GT + V++LF+ +PAR  FLK  + E   I     R+A+ YP
Sbjct: 125 LLINGSEVISSSPTVAEVGTSITVKNLFYNVPARRRFLKGSETELRHIYRQFERIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT  +       +       +   RI  ++G+ +    + +  +     + G+  +P
Sbjct: 185 EIAFTLYSEGKLIRNLP----KSDLQHRIVDLLGKSYSKQLIPIEYQGPLANVSGFITLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    Q + F+NGR ++  +    +   + + I  G  P   +  ++DP ++DVN+H
Sbjct: 241 RDAKRRGAQQFFFVNGRYMKHPYFHRAVMNVFEDLIAPGSQPNYFIYFQVDPSRIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ------------- 347
           P K+ I+F +   I   ++  +++ ++      +   S   +                  
Sbjct: 301 PTKTEIKFLDEQAIFKLLMVVLREHLSTTSAMPAITFSTDQLIEIPAYDATRQSSSTLQP 360

Query: 348 ------------------DNAPKTHLPKYATSLTNTQEKLFLQ------ENRLSTNDLLP 383
                             D  P   L   ++      E           E+ LST+    
Sbjct: 361 PPVQIDPEYNPFKAISTDDQRPLDPLSSMSSGSPAHWENFIDDFQQRRGESTLSTSQPTG 420

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +              S               + Y+ +  +D L ++    A  R+ +E+ 
Sbjct: 421 AAPTAIDPLFTVSPSSPQPAANSTNLVYTFQERYLFTTMSDRLAVIQIDRALLRIYYEQQ 480

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER-------FGPNAIA 496
                     +Q LL  E + L      +  E  E L ++G +             N   
Sbjct: 481 IATLTLEPDQAQPLLFAEELSLPSEIYPMHHELVESLRQIGFEITPQEEASAGTDENVYL 540

Query: 497 IREIPAILSKKNIPQLLR----DIIDEI--IDSSTTYTLQDRIENI-LATMACYGS---I 546
           I  +P  L    +  ++     + +D++   ++ T  +   ++  + L++ A   +   +
Sbjct: 541 ITSVPKPLRPIGVADMITQTLGEYLDQLEREETDTELSQATQLAQLFLSSEALRQASELV 600

Query: 547 RSGRKMQSIEMN--RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           R    + +      +++ ++   PNS     GR   + L   +I+K F
Sbjct: 601 R--HTLHARAAQPSQIISDLFLTPNSQFDPLGRSIMVSLTSEEIDKWF 646


>gi|15602769|ref|NP_245841.1| DNA mismatch repair protein [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431695|sp|P57886|MUTL_PASMU RecName: Full=DNA mismatch repair protein mutL
 gi|12721220|gb|AAK02988.1| MutL [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 617

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/559 (29%), Positives = 276/559 (49%), Gaps = 36/559 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG +  +I DNG
Sbjct: 1   MAIKVLSPQLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIENGGSTLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD  NI + GFRGEAL SI +VS LTL SRP   N  
Sbjct: 61  IGIAKDELSLALARHATSKIASLDDLDNILSLGFRGEALASISSVSRLTLTSRPATQNEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G ++ +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGREMETTLQPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   +SFT +       +           +R++ + G++F+ NA+E++ K +++ L G+ 
Sbjct: 181 AKMAISFTLTHNGKIVRQYRSAHDRTQKLKRVAAICGDEFVQNALEIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PTF+R   +  Y +INGR V+DK I   IR AYA+ +   +YP  VL ++++P  VDV
Sbjct: 241 AQPTFSRTQNDLSYCYINGRMVRDKIITHAIRQAYADFLSPEQYPAFVLFIDLNPNDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS------TSSVLSKKMISSFHQDNAP 351
           NVHP K  +RF    ++ +FI Q I  A++ +  S           + ++  S   +  P
Sbjct: 301 NVHPTKHEVRFHQQRLVHDFICQGISNALHSEQASLYQTNEACVSANYQVEESAQHEYRP 360

Query: 352 KTHLPKYAT-------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
               P  A        S T T      Q N+ +T +         +      E++  +  
Sbjct: 361 SYSKPNRAAAGQNIFDSSTTTPSTALFQTNKKNTQNRPHFSTNIPATRISKTEQAAYSAL 420

Query: 405 QLGIACAQIHQNYI-------ISQTTDGLVIVDQHA------------AHERLIFEKMRQ 445
                 A +                   L +V+  A            + ++L   K+  
Sbjct: 421 LSNSEMATVLPQEDGALLERKTPSILKALALVENKALLLQQQQQFYLLSLQQLQRLKIEL 480

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGPNAIAIREIPAIL 504
                 +  Q LL P +  L   +     +      ++G +  E  G   I +  +P+ L
Sbjct: 481 SLQRDPVLQQPLLIPIVFRLNPQQLTYWQQQKTFFTQIGFEFHENLGQQRITLNRVPSCL 540

Query: 505 SKKNIPQLLRDIIDEIIDS 523
            ++N+ + +  ++ + +D+
Sbjct: 541 RQQNLQKCIIVLLSQPLDT 559


>gi|282859618|ref|ZP_06268721.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           bivia JCVIHMP010]
 gi|282587621|gb|EFB92823.1| DNA mismatch repair protein, C-terminal domain protein [Prevotella
           bivia JCVIHMP010]
          Length = 581

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 267/580 (46%), Gaps = 62/580 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+I+RP+  IKELIENS+DA ++ ++ ++   G++  Q+ DNG G
Sbjct: 5   IQLLPDSVANQIAAGEVIQRPASVIKELIENSVDAGATIIKVLVVDAGRTSIQVVDNGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  ++ +RH TSKI   DD  ++HT GFRGEAL SI AV+ + L +R   +  G  
Sbjct: 65  MSEIDARLSFERHATSKIRKADDLFSLHTMGFRGEALASIAAVAQVELKTRIEGDELGCH 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           ++ISG       P     G+   + +LFF +PAR  FLKS   E N I    +R+A+ YP
Sbjct: 125 LSISGGSFVGQEPCQCAVGSNFLIENLFFNVPARRKFLKSNTTELNNIITAFQRIALVYP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++FT  +  +  + ++  S    F +RI ++ G+   +  + +  ++    + G+ G P
Sbjct: 185 SITFTLHSNDTEMFNLHACS----FKQRIVEIFGKRLSHELLPVEVETTLCNIHGFVGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             ++      Y+F+N R ++  +    I +AY   IP G      +   +    +DVN+H
Sbjct: 241 ESSKKKGAHQYLFVNDRYMKHPYFHKAIMSAYERLIPQGEQVSYFIYFNVPAEDIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   ++ +++ AI K    ++       +  I  F  +N        
Sbjct: 301 PTKTEIKFENEQAIWQILMAAVRDAIGKFHDVSAIDFDTEGRPDIPVFDPENEASAPKMD 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED------------------------- 392
           +  +    +E  FL+    S+N    +     S                           
Sbjct: 361 FNPNFNPFKESSFLEGGSQSSNTTFAATQGKTSSKSYTSRADFSKVSSDNWEELYAGSLL 420

Query: 393 ----------------------------NDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                                       +   +E+ A   +   +  Q    YI++    
Sbjct: 421 ANDKNEEGEACLLPSLGFKHEDEGVLIASKMSDEAAAIIEEKSPSHYQYKGRYIMTAVKS 480

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL+I+DQH AH R+++E+  + F   K  +Q +L PE++ L   E  ++ +   ++  +G
Sbjct: 481 GLMIIDQHRAHVRILYEQYLKQFAEHKGHTQKMLFPEVVHLTATELTVLEKISIEMQEIG 540

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
            + +  G  + AI  +PA L   NI  L++++I    +  
Sbjct: 541 FQLDDLGGGSFAINGVPAGLEGLNIINLVQEMISTAHEKG 580


>gi|254796959|ref|YP_003081796.1| DNA mismatch repair protein, MutL/HexB family [Neorickettsia
           risticii str. Illinois]
 gi|254590166|gb|ACT69528.1| DNA mismatch repair protein, MutL/HexB family [Neorickettsia
           risticii str. Illinois]
          Length = 651

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 176/661 (26%), Positives = 316/661 (47%), Gaps = 78/661 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ L  +IIN+IAAGEI+E+P+ A+KEL+EN++DA S+ ++  +   G++  ++TDNG
Sbjct: 1   MKIQVLPTEIINKIAAGEILEKPANAVKELVENAIDASSTSIKIELEEAGRNLIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G++ E++ +A+++H TSK++  D  +I+  GFRGEAL SI   S + + S         
Sbjct: 61  VGISIEDLHLAIEKHATSKLNTKDLYDINYLGFRGEALHSIAITSEMKIASCFNGEG--- 117

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I   +   ++P  +  GT+VEVR LF  IP +L FL+SE+ E + I +++ ++A+  
Sbjct: 118 --YIIDAQTKEIKPHHIKCGTVVEVRKLFHNIPNKLRFLRSEKTELSSIIELLNKLALVN 175

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F   +     +     +      +   +V+G++F+ N + +   ++ I+ + + G+
Sbjct: 176 PNIAFELLSNGRQVFDYQTTTQLKRMEQL--KVLGKEFVENMIHMKHTNDCISGELFLGL 233

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT      N   +F+NGR V+D  I S +R AY + IP   YP+ V+ + +  ++VDVN+
Sbjct: 234 PTLT-QKRNNCLIFVNGRPVKDSVISSVMRHAYNDYIPKNTYPIAVVFIRVQNKEVDVNI 292

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT------ 353
           HP KS ++FR+P +IR F++    K++++ G +TS+ ++   +  F+Q    ++      
Sbjct: 293 HPNKSEVKFRDPQVIRKFLLSVTSKSLSQCGHTTSTTVASHAVERFNQLLEKQSTFREET 352

Query: 354 ----------HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
                       PK       ++E     E + + +     ++  +    D  EE+    
Sbjct: 353 VSKTTESDLLQSPKERKMTAQSEEYAKQLEYKGNLDFDQMQNNNPFHFLTDQSEEAPFLM 412

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQ-----------------HAAHERL--IFEKMR 444
                +    ++  +  Q    + + D                  H  +E+    F K +
Sbjct: 413 GHKKTSDEYPNKIPLGKQQNSSIFLHDNQDASFLQQQLRKINHREHLQNEKHFETFGKFK 472

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHD--------------------------- 477
              + T I ++T     IID       ++ E                             
Sbjct: 473 CQVHGTFIITETENEIIIIDQHAAHERVLYEQMKKSITSPGQNLLMAEFVPLSERAVEIL 532

Query: 478 ----EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
               E L  +G+  ER    AI +  +P +       +L+ DI   + +     TL   +
Sbjct: 533 SLNVEKLKEIGLVVERVSHCAIMVNSLPEVFKNTPTNELIEDIASLLEEEIEPRTL---L 589

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E + A +AC  +I++   +   E+  LL  ME  P++ QCNHGRPT I+L   +IEKLF 
Sbjct: 590 ERVYANIACKRAIKANHNLTREEIEELLTLMENIPHTGQCNHGRPTHIRLPRKEIEKLFL 649

Query: 594 R 594
           R
Sbjct: 650 R 650


>gi|301156622|emb|CBW16093.1| methyl-directed mismatch repair protein [Haemophilus parainfluenzae
           T3T1]
          Length = 616

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/579 (29%), Positives = 288/579 (49%), Gaps = 48/579 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++   I  GG S  +I DNG
Sbjct: 1   MAIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIHIDIENGGASLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  SGIPKEELSLALARHATSKIAVLDDLEAILSLGFRGEALASISSVSRLTLTSRTAEQNEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G ++ +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGREMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++FT +       +    +      +R++ + G+DF+ +A+ ++ K +++ L G+ 
Sbjct: 181 AKFNIAFTLTHNGKIVRQYRPATNEEQQLKRVAAICGDDFVQHALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R   +  Y +INGR V+DK I   IR AYAE +   +YP  VL ++++P  VDV
Sbjct: 241 ATPEFTRSQNDLSYCYINGRMVRDKVITHAIRQAYAEHLHTEQYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN---------------------------KKG 330
           NVHP K  +RF    +I +FI Q +  A+N                           +  
Sbjct: 301 NVHPTKHEVRFHQARLIHDFICQGVTNALNAIPQAELDLAPTINETREPSASYQTHYELK 360

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS------TNDLLPS 384
            + ++       S++HQ    ++    + ++ ++       +E + +        +L+ S
Sbjct: 361 PNRAAAGQNIFASNYHQPREKQSENRPHFSNRSDYVPSYDYREQQPTKTEQRLYGELVRS 420

Query: 385 DDPTYSEDNDPVEE--SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            + +    N  VE+   + +      A A I    ++ Q      ++   A  + L +E 
Sbjct: 421 TEASQVFTNSIVEQQLPQTSETGYLRALALIENKALLLQQNQQFYLMSL-AKLQTLNYE- 478

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK-AERFGPNAIAIREIP 501
                   +I+ Q LL P I  L E +     +      + G +  E      + + ++P
Sbjct: 479 --LTLQQGEISQQPLLIPIIFRLDEKQFEQWKKQKAFFQQSGFEFIENEAQLRLTLNKVP 536

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
           AIL  +N+ + +  ++ E +++     + D +  +  T+
Sbjct: 537 AILRTQNLQKCVVSLLAEHVEN-----MPDFLTALCQTL 570


>gi|312882818|ref|ZP_07742551.1| DNA mismatch repair protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369510|gb|EFP97029.1| DNA mismatch repair protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 633

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/619 (27%), Positives = 281/619 (45%), Gaps = 65/619 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KELIENSLD+ +SR++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELIENSLDSGASRIDIDIDKGGSKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHCLDDLETIMSLGFRGEALASISSVSRLTITSRPAAQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E + I +++RR+A+
Sbjct: 121 WSAYSEGRNMEVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFSHIEELVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +     T+    +R++ V G  F+ + +++  + N + L G+ 
Sbjct: 181 SRFDVSLNLKHNGKIVKQYRASKTDKQTEQRLASVCGSAFVRHMLKIELEHNGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   IR +Y  ++   ++   VL +EIDP+QVDV
Sbjct: 241 TTPQGARQQGDLQYCYVNGRMMRDKLINHAIRQSYETSLEANQFAAYVLFIEIDPQQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL-- 355
           NVHPAK  +RF    ++ +FI Q++  A+ +        L++    +FHQD  P      
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALVQGAYIEPIPLNE---GAFHQDQCPMKSQSA 357

Query: 356 --------------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
                         P Y       QE   ++E R        + +    + +     S  
Sbjct: 358 SAAYERERQVIDSVPNYPGKEVKVQETAQVREQRDWVTPQSHTREKITEQYSSKKPRSNE 417

Query: 402 THYQL----------------------------GIACAQIHQNYIISQTTDGLVIVDQHA 433
                                            G A   IH  Y+++    G  IV+   
Sbjct: 418 IKAYQQLLTVTREAKDDLEDTTELTSPNQVLSIGKAMHVIHDQYLVTADKLGTNIVNLAK 477

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A    +  ++        + SQ LL P  + L      +  ++ +   R G++    G  
Sbjct: 478 AEWLRVRGQLLF---EEGLKSQPLLVPLAMKLDNNLLKIADDYKQLFTRFGLEIRTRGKE 534

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDS---STTYTLQDRIENI--LATMACYGSIRS 548
           +I +  +P +L ++N+ QL+ D++  + +    S +   ++  + +    T      ++ 
Sbjct: 535 SIIVMGVPNLLRQQNLQQLIPDLLTFVGNHEVESQSLNKKELADWLSFQITR-----VK- 588

Query: 549 GRKMQSIEMNRLLREMEKN 567
                  E  ++L ++E  
Sbjct: 589 -DTYTLSEAIQILADIELT 606


>gi|261493052|ref|ZP_05989592.1| DNA mismatch repair protein MutL [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261496340|ref|ZP_05992735.1| DNA mismatch repair protein MutL [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261307984|gb|EEY09292.1| DNA mismatch repair protein MutL [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261311272|gb|EEY12435.1| DNA mismatch repair protein MutL [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 627

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/563 (27%), Positives = 271/563 (48%), Gaps = 46/563 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    +I DNG G
Sbjct: 10  IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANTIQIDIEKGGSQLIRIRDNGCG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ +++P+A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SR  +     Q
Sbjct: 70  ISKQDLPLALARHATSKISSLEDLEAILSLGFRGEALASISSVSRLTLTSRTAEQTEAWQ 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G +++  ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 130 AYAQGREMAVEIQPASHPIGTTIEVANLFFNTPARRKFLRTDKTEFAHIDEVVRRIALAK 189

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P +SF+ S       +      ++     +R++ + G++FI ++  ++ +  ++ L G+ 
Sbjct: 190 PNISFSLSHNGKIVRQYRKVQDNSVEQQQKRVAAICGDEFIQHSTYIDWQHGDLHLHGWV 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   R   +  Y ++NGR ++DK I   IR AY ++I  G YP  V+ L++DP  VDV
Sbjct: 250 GSPALARLQNDLCYSYVNGRMMRDKTINHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI---------------STSSVLSKKMI 342
           NVHPAK  +RF    ++ +FI+Q +  ++ +                     +       
Sbjct: 310 NVHPAKHEVRFHQGRLVHDFILQGVLNSLQQTQPTLELRNEVNEPLPSYIQDTNRQAAGQ 369

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--ESE 400
           + F    AP+        +  ++    F + N +S++      +    + +      +++
Sbjct: 370 NIFVSQTAPQAAEFTQKNASRSSYTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQ 429

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH-------------ERLIFE------ 441
           +T  +        H+   +SQ    +  +  H +              E   F       
Sbjct: 430 STLVEPKTEPQTEHKTEAVSQKITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLAT 489

Query: 442 --KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIA 496
             +++      K  SQ LL P  + L + +     +  E+L  LG             + 
Sbjct: 490 LAELKLKLQLEKGQSQALLIPLNLSLDQQQTERWQQTKEELTELGFSISEKQWQAQTRLT 549

Query: 497 IREIPAILSKKNIPQLLRDIIDE 519
           +  +P  + ++N+ QLL  + ++
Sbjct: 550 VLSVPQAVREQNLQQLLFALFNQ 572


>gi|296125279|ref|YP_003632531.1| DNA mismatch repair protein MutL [Brachyspira murdochii DSM 12563]
 gi|296017095|gb|ADG70332.1| DNA mismatch repair protein MutL [Brachyspira murdochii DSM 12563]
          Length = 608

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/609 (28%), Positives = 302/609 (49%), Gaps = 22/609 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL + + N+IAAGE+IERP+  +KEL+EN++D+ +S +E  +   G     + DNG G
Sbjct: 5   IMKLPQSVANRIAAGEVIERPASMLKELLENAVDSGASDIEVSVEEAGIKSMIVEDNGDG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+AV  H TSKI   +D  +I+T GFRGEAL SI  V++L ++S+    N G +
Sbjct: 65  IHFDELPLAVTHHATSKIHSIEDLDSIYTLGFRGEALASISDVTNLEIVSKSRDENNGGK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G KI   +P A + GT V  ++LFF IPAR  FLK    E  L+ +V    A+  P
Sbjct: 125 IIIEGGKIIEHKPAAASQGTKVIAKNLFFNIPARYKFLKHISREFFLVKEVFDMEALVQP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++S                 T  +  E    +   +   N +E+  + N++ + G     
Sbjct: 185 QISMKLKNNGKVVSSYIKADTLKDRIEN--YLSDSNIFRNLIEIEIEKNDVLIYGLFSNS 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             ++      ++F+N R ++++ +   I+ AY+  IP  RYP   L + ID  ++DVNVH
Sbjct: 243 KISQSIRKNNFIFLNNRPIENRVLSYAIKNAYSNAIPKERYPFFFLYINIDSSKIDVNVH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----LSKKMISSFHQDNAPKTHL 355
           P+K  +R +N   I   +  +I   IN  G +  SV     + K +  +F   N    + 
Sbjct: 303 PSKKEVRIKNEREISGMLYNAISNNINNAGNNFDSVNIEVDIDKDITPTFPIQNNNFYNN 362

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE------DNDPVEESEATHYQLGIA 409
              A +  N      + +   + ++     + T+        +N+          +   A
Sbjct: 363 TDSANNSKNNNVINNINQTSQNYSNKNNLGNYTFDNTYPKTINNNKTNYENKEFGEYTRA 422

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+  +YI+++    + I+DQHAA+ERL +E++ +   S KI  + LL P  I+  + E
Sbjct: 423 IGQVFSSYIVAERGSEMYIIDQHAAYERLNYERIYKTLISKKIEYEKLLIPCEIEYKDYE 482

Query: 470 CALIMEHDEDLHRLGIKAERFGPNA----IAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
             ++    + +  +GIK E    ++         IP     + I ++++DI+D  I+   
Sbjct: 483 IDILNSSKKSIEEIGIKFEVNSKHSIIIEDIPIYIP---RNQKIEKIIKDILDIYINKGD 539

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              L+  I++  +T++C  S ++G K+ + +M  LL  +E+    + C HGRP  ++L  
Sbjct: 540 NNNLEKIIKHTCSTISCKYSPKAGDKLSNSDMQTLLDLLEEENILTNCPHGRPFVLRLSK 599

Query: 586 SDIEKLFGR 594
             ++K F R
Sbjct: 600 EYLDKKFFR 608


>gi|298242707|ref|ZP_06966514.1| DNA mismatch repair protein MutL [Ktedonobacter racemifer DSM
           44963]
 gi|297555761|gb|EFH89625.1| DNA mismatch repair protein MutL [Ktedonobacter racemifer DSM
           44963]
          Length = 599

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/611 (27%), Positives = 281/611 (45%), Gaps = 53/611 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L +++  +IAAGE+IERP   IKEL+EN+LDA +  +   + GGG    +++D+G 
Sbjct: 20  PIVVLPDEVAERIAAGEVIERPVSVIKELVENALDARACAIRIEVRGGGLRLMRVSDDGT 79

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+  A  RH TSK+S  +D   + T GFRGEAL SI  ++ +TL SR  +    +
Sbjct: 80  GILEDELERACLRHSTSKLSTIEDLGRLGTLGFRGEALASIATIAEMTLESRASETEDES 139

Query: 120 QIAISGE------KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
           +   +        ++      A  PGT V VRDLFF +PARL F++  + E   I   IR
Sbjct: 140 EERPAQFITLRGGEVVERGRKARVPGTTVTVRDLFFNVPARLKFIRGARTENGHILHYIR 199

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-KSNEIT 232
           R A+ YP V FT    +    +    S +G     ++++          E+      +  
Sbjct: 200 RYALGYPGVRFTLVLDEHIALQ---TSGSGELKTALTEIYSLPLNEMLYEVERGAGEQYR 256

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + GY G     + N     +F+NGR VQ + +   +   Y   +  G++P++VL +E+ P
Sbjct: 257 VHGYIGNRVLAQNNRQYVTLFVNGRWVQSRVLYDAVEKGYRGLLAKGKHPLLVLFIEVAP 316

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
            +VDVNVHPAK+ +R      +   + +++Q  + +  +    +                
Sbjct: 317 DEVDVNVHPAKTEVRLFREREVLELLTEAVQAVLERSPVLPEEI---------------- 360

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
               K+   +  TQ +L     R      L   +       +    + A         AQ
Sbjct: 361 ----KFPGPILATQRRLPGARRR-----GLHMSETAEDYLAEAAPPASAEAIAQLCPLAQ 411

Query: 413 IHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDF----------NSTKITSQTLLTPE 461
           + +  I+++  DG L +VDQH AHER+I+E +RQ +              +    LL P 
Sbjct: 412 LQRAVILAEAPDGSLYLVDQHRAHERVIYEHLRQRYAHGIDSAEDEEGEAVNGHLLLEPV 471

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I++L   +  L+ E    L  LG++ ERFG  +  +R IP     + +   + D++    
Sbjct: 472 IVELKRHQAELLEERLPMLRGLGLECERFGGRSFLVRSIPGGEGYEQLVGQVEDLVQIAA 531

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           + +     +D   ++L  ++C  ++R GR++   E   LL  + +    + C HG P  +
Sbjct: 532 EDN-----EDWEHSLLIGLSCRSALRRGRELSQGEQQSLLTSLARASVPAVCPHGSPILL 586

Query: 582 KLKLSDIEKLF 592
               S + + F
Sbjct: 587 HYSRSFLIEKF 597


>gi|53729030|ref|ZP_00134309.2| COG0323: DNA mismatch repair enzyme (predicted ATPase)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209412|ref|YP_001054637.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae L20]
 gi|303251733|ref|ZP_07337904.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249031|ref|ZP_07531039.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307251230|ref|ZP_07533151.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262460|ref|ZP_07544105.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|126098204|gb|ABN75032.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302649163|gb|EFL79348.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854489|gb|EFM86684.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306856746|gb|EFM88881.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306867837|gb|EFM99668.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 622

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/560 (30%), Positives = 273/560 (48%), Gaps = 45/560 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 66  IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPAGQAEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 126 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 186 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 246 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 305

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ +D        
Sbjct: 306 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQSEIGLTDQVNEPLPSYQRDTNRMAAGG 365

Query: 349 -----------------NAPKTHLPKYA---TSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                + +P Y+   TS++ + +K + +             D  
Sbjct: 366 NSFLAPQQAVEFSENFVKPTASRMPSYSPRTTSVSKSAQKWYGELISQPQPQSDNRQDFV 425

Query: 389 YSEDN-------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL-IF 440
             + N           E+E    Q     +   Q   I Q    L+  DQ      L   
Sbjct: 426 EPKTNAAPVIFAQERVEAEHKPIQSVPMKSDHWQPLAIVQNQALLLKADQQFYLISLEKL 485

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R      K  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 486 ARLRFQTQLAKGESQALLIPLNLSLDEVQAQHWQILKAPLAELGFVISEKAWQGQIRLSL 545

Query: 498 REIPAILSKKNIPQLLRDII 517
            ++P +L ++N+ Q+L  ++
Sbjct: 546 SQVPRLLREQNLQQILLGLL 565


>gi|152973040|ref|YP_001338186.1| DNA mismatch repair protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330003342|ref|ZP_08304585.1| DNA mismatch repair protein [Klebsiella sp. MS 92-3]
 gi|166232094|sp|A6TH85|MUTL_KLEP7 RecName: Full=DNA mismatch repair protein mutL
 gi|150957889|gb|ABR79919.1| DNA mismatch repair protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|328537004|gb|EGF63294.1| DNA mismatch repair protein [Klebsiella sp. MS 92-3]
          Length = 619

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/614 (26%), Positives = 273/614 (44%), Gaps = 61/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  SGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVARLTLTSRTAEQQEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAQDGQRERRLGTICGAAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPLHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  +            +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLAEKDDPPAPRPMPENRIAAGGN 360

Query: 357 KYA-----------------------------TSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++A                              S  + Q     Q+  L    L     P
Sbjct: 361 QFARPAEAREPATRFSITPSREPAASSGKPGGASWPHAQPGYQKQQGALYRQLLDTPTSP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             +       E        G     +  +  + +   GL ++    A   L   ++    
Sbjct: 421 KPALQPPAAAELAGHSQSFGRVLTIVGGDCALLEREGGLALLSLTVAERWLRQAQL--TP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +  + +Q LL P  + + EGE   +      L +LGI         + +R +P  L ++
Sbjct: 479 GAEAVCAQPLLIPLRLKVTEGEKQALAAAQPALAQLGIDV-HTDALHVTVRAVPLPLRQQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI-------EMNRL 560
           N+  L+ ++I  +   +        + NI   MA        R + S        +   L
Sbjct: 538 NLQILIPELIGYLAQQNAFD-----VGNIAQWMA--------RNLTSEQTSWNMAQAIAL 584

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 585 LADVERL-----CP 593


>gi|238892654|ref|YP_002917388.1| DNA mismatch repair protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238544970|dbj|BAH61321.1| DNA mismatch repair protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 619

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/614 (26%), Positives = 273/614 (44%), Gaps = 61/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  SGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVARLTLTSRTAEQQEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAQDGQRERRLGTICGAAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPLHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  +            +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLAEKDDPPAPRPMPENRIAAGGN 360

Query: 357 KYA-----------------------------TSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++A                              S  + Q     Q+  L    L     P
Sbjct: 361 QFARPAEAREPATRFSITPSREPAASSGKPGGASWPHAQPGYQKQQGALYRQLLDTPTAP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             +       E        G     +  +  + +   GL ++    A   L   ++    
Sbjct: 421 KPALQPPAAAELAGHSQSFGRVLTIVGGDCALLEREGGLALLSLTVAERWLRQAQL--TP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +  + +Q LL P  + + EGE   +      L +LGI         + +R +P  L ++
Sbjct: 479 GAEAVCAQPLLIPLRLKVTEGEKQALAAAQPALAQLGIDV-HTDALHVTVRAVPLPLRQQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI-------EMNRL 560
           N+  L+ ++I  +   +        + NI   MA        R + S        +   L
Sbjct: 538 NLQILIPELIGYLAQQNAFD-----VGNIAQWMA--------RNLTSEQTSWNMAQAIAL 584

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 585 LADVERL-----CP 593


>gi|112361948|gb|ABI15931.1| MutL [Klebsiella pneumoniae]
          Length = 619

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/614 (26%), Positives = 273/614 (44%), Gaps = 61/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  SGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVARLTLTSRTAEQQEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAQDGQRERRLGTICGAAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPLHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  +            +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLAEKDDPPAPRPMPENRIAAGGN 360

Query: 357 KYA-----------------------------TSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++A                              S  + Q     Q+  L    L     P
Sbjct: 361 QFARPAEAREPATRFSITPSREPAASSGKPGGASWPHAQPGYQKQQGALYRQLLDTPTAP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             +       E        G     +  +  + +   GL ++    A   L   ++    
Sbjct: 421 KPALQPPAAAELAGHSQSFGRVLTIVGGDCALLEREGGLALLSLTVAERWLRQAQL--TP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +  + +Q LL P  + + EGE   +      L +LGI         + +R +P  L ++
Sbjct: 479 GAEAVCAQPLLIPLRLKVTEGEKQALAAAQPALAQLGIDV-HTDALHVTVRAVPLPLRQQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI-------EMNRL 560
           N+  L+ ++I  +   +        + NI   MA        R + S        +   L
Sbjct: 538 NLQILIPELIGYLAQQNAFD-----VGNIAQWMA--------RYLTSEQTSWNMAQAIAL 584

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 585 LADVERL-----CP 593


>gi|307258062|ref|ZP_07539814.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863425|gb|EFM95356.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 661

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/559 (29%), Positives = 268/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 45  IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 104

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 105 IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPEGQAEAWQ 164

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 165 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 224

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 225 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 284

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 285 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 344

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ +D        
Sbjct: 345 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQSEIGLTDQVNEPLPSYQRDTNRMAAGG 404

Query: 349 -----------------NAPKTHLPKYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                +H+P Y+     ++ + +K + +      N      D  
Sbjct: 405 NSFLAPQQAVEFTENFAKPTASHMPNYSPRTSGVSKSAQKWYGELVSQPQNQSDNIQDLI 464

Query: 389 YSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             + N        +  E        +  A        I+      L    Q         
Sbjct: 465 EPKANFAPVIFAQEIDEAEPKPTQVVSAAIGHWQPLAIVQNQALLLKAEQQFYLLSLEKL 524

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R     TK  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 525 ARLRFQTQLTKGESQALLIPLNLSLDEQQTQRWQTLKTPLAELGFAISEKTWQGQIRLSV 584

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 585 TQVPRLLREQNLQQILLSL 603


>gi|254411766|ref|ZP_05025542.1| MutL C terminal dimerisation domain family [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181488|gb|EDX76476.1| MutL C terminal dimerisation domain family [Microcoleus
           chthonoplastes PCC 7420]
          Length = 575

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/616 (26%), Positives = 272/616 (44%), Gaps = 77/616 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L  +++N IAAGE+I+  +  ++EL+EN+LDA ++R+   +        ++ DNG 
Sbjct: 4   SIQTLPTEVVNLIAAGEVIDSLAAVVRELVENALDAGATRIAVAVW-FDLWRVRVADNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++  A   H TSKI   DD   I + GFRGEAL SI A++ L + SR        
Sbjct: 63  GMDLTDLQKAASAHSTSKIKSRDDLYKITSLGFRGEALHSIAALAELEICSRQTGFEGWR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               +  +      VA+ PGT+V V +LF     R   L S   +  +I   I+ +A+ +
Sbjct: 123 CTYNTQGEAEETEAVAIAPGTVVTVSNLFGKWRLRRQGLPSRSQQQRIIQATIQNIALCH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDF--------------INNAVEL 224
           P V++       + + ++   T     P+ + QV   D                    E 
Sbjct: 183 PSVTWQVQQSDRSWFTISPGKTTQQIIPQLLKQVRVHDLQQLTLDVPTPEEGSAGEIREF 242

Query: 225 NEKSNEITLQG-----YTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
              S   T  G       G+P   +R   +   V  NGR V+   +  TI TA A+T+P 
Sbjct: 243 TYNSTPKTRHGASLHLVLGLPDRCHRRRPDWVKVATNGRLVRSPELEQTILTAMAKTLPR 302

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
            RYP+  + L+I P Q+D N HPAK+ I   + +  +  I Q+I++A+            
Sbjct: 303 DRYPICFIHLQICPSQIDWNRHPAKAEIYLHSLSYWQEQISQAIEQALR----------- 351

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
              I + + D A ++H  +    LT + +K     +     +  PSD             
Sbjct: 352 ---IGAENFDTASQSH--RVGKLLTASAKKGVYHLDESPKQERNPSDIGLIE-------- 398

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                     A AQ+   YI+++   G+ +++QH AHER+++E++R  +    +    +L
Sbjct: 399 --------LKAVAQVRNMYILAEHDTGMWLIEQHIAHERVLYEQLRDRWQLVPLEPPVIL 450

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
                              E L R+G++ E FG    A+R  PA+L +++      D  D
Sbjct: 451 NYLTPV-----------QLEQLQRIGLEIEPFGDQLWAVRNAPALLHQRD------DCAD 493

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +++ S    LQ    N     AC  +IR+G  +   +M  LL + +   +   C HGRP
Sbjct: 494 ALLELSLGGDLQ----NAQVATACRSAIRNGTPLTLEQMQTLLNQWKMTRHPRTCPHGRP 549

Query: 579 TFIKLKLSDIEKLFGR 594
            ++ L+ S + + F R
Sbjct: 550 IYLPLEESALARFFRR 565


>gi|186683441|ref|YP_001866637.1| DNA mismatch repair protein [Nostoc punctiforme PCC 73102]
 gi|238691251|sp|B2IYW1|MUTL_NOSP7 RecName: Full=DNA mismatch repair protein mutL
 gi|186465893|gb|ACC81694.1| DNA mismatch repair protein MutL [Nostoc punctiforme PCC 73102]
          Length = 568

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/611 (25%), Positives = 268/611 (43%), Gaps = 76/611 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  +++  I AGE+I+  +  ++EL+ENSLDA ++R+   +    +   ++ DNG G
Sbjct: 5   IQALPTEVVYLITAGEVIDSLASVVRELVENSLDAGATRIVVSLW-PQQWRIRVADNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  +++  A   H TSKI    D   I++ GFRGEAL S+  ++ L ++SRP     G +
Sbjct: 64  MNLDDLQQAATAHSTSKIRSSADLWKINSLGFRGEALHSLTTLADLEILSRPVDGKLGWR 123

Query: 121 I-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           I   +G K+  V   A+ PGT+V V +LF    +R   L +   +   +   I ++A+ +
Sbjct: 124 ISYGNGGKVVQVEVTAIAPGTVVTVSNLFGNCSSRRQGLPTTAQQMKAVQATIYQIALCH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSN--------- 229
           P V++         + ++   T G   P+ + QV   D     +E+    +         
Sbjct: 184 PHVTWQIWQNDRQWFTISPARTTGQLLPQILPQVRQGDLQEVKLEIPNPPHSPLPCTNAI 243

Query: 230 -----EITLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPV 283
                   L    G+P   +R   +   V INGR V+   +  TI +A+  T+P  RYP+
Sbjct: 244 HRVSPHSALTLVVGLPDRCHRHRPDWVRVAINGRMVKTPELEQTILSAFHRTLPRDRYPI 303

Query: 284 VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
             L L I P Q++ N +PAK+ I        +  I Q+I +A++    +    +    +S
Sbjct: 304 CFLHLAISPDQINWNRNPAKTEIYLNEIIYWQEQITQAINQALSISSSNLKEAVHTTRVS 363

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
                                                L  ++       N    + +  +
Sbjct: 364 KL-----------------------------------LKAAEAKGGYNFNPQNPKEDRKN 388

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                A AQ+   YI+++   G+ +V+QH AHER+++E++  D+    +    +L     
Sbjct: 389 PNSLKAVAQVSNTYIVAEHPGGMWLVEQHIAHERVLYEQLCDDWQLVPVEPPIIL----- 443

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                   L +     L R+G+  E FG    A+R IPA L +++      D  + I++ 
Sbjct: 444 ------YQLSLAQVSQLQRIGLDIESFGEQLWAVRNIPAPLQQRD------DCAEAILEL 491

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           S    LQ     +    AC  +IR+G  M   EM  LL   ++  N   C HGRP ++ L
Sbjct: 492 SWGGDLQTAQVAV----ACRSAIRNGTPMNQQEMQTLLDNWQRTRNPRTCPHGRPIYLSL 547

Query: 584 KLSDIEKLFGR 594
           + S + + F R
Sbjct: 548 EESALARFFRR 558


>gi|307246895|ref|ZP_07528960.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255877|ref|ZP_07537678.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260330|ref|ZP_07542037.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852180|gb|EFM84420.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861145|gb|EFM93138.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865581|gb|EFM97462.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 622

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/559 (29%), Positives = 268/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 66  IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPAGQAEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 126 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 186 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 246 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 305

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ +D        
Sbjct: 306 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQAEIDLTHQVNEPLPSYQRDTNRMAAGG 365

Query: 349 -----------------NAPKTHLPKYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                +H+P Y+     ++ + +K + +      N      D  
Sbjct: 366 NSFLASQQAVEFTENFAKPTASHMPNYSPRTSGVSKSAQKWYGELVSQPQNQSDNIQDLI 425

Query: 389 YSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             + N        +  E        +  A        I+      L    Q         
Sbjct: 426 EPKANFAPVIFAQEIDEAEPKPTQVVSAAIGHWQPLAIVQNQALLLKAEQQFYLLSLEKL 485

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R     TK  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 486 ARLRFQTQLTKGESQALLIPLNLSLDEQQTQRWQTLKTPLAELGFAISEKTWQGQIRLSV 545

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 546 TQVPRLLREQNLQQILLSL 564


>gi|290473399|ref|YP_003466265.1| methyl-directed mismatch repair protein [Xenorhabdus bovienii
           SS-2004]
 gi|289172698|emb|CBJ79469.1| enzyme in methyl-directed mismatch repair, stimulates binding of
           Vsr and MutS to heteroduplex DNA [Xenorhabdus bovienii
           SS-2004]
          Length = 647

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/636 (25%), Positives = 278/636 (43%), Gaps = 77/636 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MAIRILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIDQQDLTLALARHATSKIASLDDLEAIVSMGFRGEALASISSVSRLTLTSRTESQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +    +P A   GT VEV DLF+  PAR  FL++E+ E   + +V+RR+A+
Sbjct: 121 WQAYAEGRDMEVTVKPAAHPVGTTVEVLDLFYNTPARRKFLRTEKTEFGHLDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+           +            R++ + G  F+  A+ L+ + + ++++G+ 
Sbjct: 181 ARLDVAINLHHNGKLVRQYRPAKEESQHERRLAAICGMAFVQQALALSWQHDSLSIKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR ++D+ I   IR AY + +   + P  VL LEIDP QVDV
Sbjct: 241 ADPMSDTVGGDIQYCYVNGRMMRDRLINHAIRQAYQDLLQGEKQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK----------KGISTSSVLSKKMISSFHQ 347
           NVHPAK  +RF    ++ +FI Q +   + +               +S + +  +S+   
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGVAAVLKQRGKGAELALGCEEPAASWVPENRLSAGEN 360

Query: 348 DNAPKT-------------------------HLPKYATSLT-NTQEKLFLQENRLSTNDL 381
               +                            P+     + N   +L   EN       
Sbjct: 361 HFLQQNTASLKASPPSRAAAAPSVSSGGHDKEQPQLDRPHSGNDTRQLHHGENYQKKQGE 420

Query: 382 LPSDDPTYSEDNDPVEESE----------------------ATHYQLGIACAQIHQNYII 419
           L       + +       E                         Y  G   +    +Y +
Sbjct: 421 LYQKMMQSAPEEKRPLFPERAVSVREKAAPIPVGAALLQGKNISYSFGKVLSIHAASYAL 480

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            ++  G+ ++    A      ++++       + SQ LL P  + L + E   + ++ E 
Sbjct: 481 IESPLGIGLLSLPVAERW--LKQVQLTPGELGLKSQPLLIPLKLSLSQAEIDALKQNSEL 538

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   GI+        + I  +   L ++N+P+LL ++++ +++  +        E +   
Sbjct: 539 LKTFGIE-STVAHGKVTIHAVSLPLRQQNLPKLLPELLNYLVEQPSACA-----EQVAIW 592

Query: 540 MACY-GSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++ + GS          +  +LL ++E+      C 
Sbjct: 593 LSRHVGS--EHETWNIAQAVQLLADVERL-----CP 621


>gi|307267460|ref|ZP_07548947.1| MutL dimerization [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917517|gb|EFN47804.1| MutL dimerization [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 551

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/555 (29%), Positives = 278/555 (50%), Gaps = 29/555 (5%)

Query: 63  MTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M   +  +A +RH TSKI  D    +I T GFRGEAL SI AVSH+TL ++      G +
Sbjct: 1   MNEIDAILAFERHATSKIKSDNDLYSIGTLGFRGEALASIAAVSHVTLQTKEEGALFGTK 60

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G K+          G  +EVRD+FF  PAR  FLK    ET  ITDV+ ++ +++P
Sbjct: 61  IVVEGGKVVEKTTCGCAKGCSIEVRDVFFNTPARRKFLKRPSTETMYITDVVTKLCLSHP 120

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF +   +  ++     S  GN  + I ++ G +  ++ +  + +S ++ L+   G  
Sbjct: 121 EISFKYVKDRKLQF---ITSGTGNIEDVILRLFGNEVYSSLMSASFESEDLKLKILAGKN 177

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + N  N N  + ++NGR V++K + + +  A+   IP+ RYP V L +EIDPRQ+DVN+H
Sbjct: 178 SLNYSNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNIH 237

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAPK 352
           P+K  I+F +   I   + ++I+ +++K  +     + +K           S  Q     
Sbjct: 238 PSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISAEQTKLYL 297

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG----- 407
           T   K         +  F  +N    +++L  +    S DN      E  H +       
Sbjct: 298 TSSDKELEEEKKKFDNEFKGKNVFLKDNVLKENSKNSSLDNHLAVYEEYEHEKEEINKND 357

Query: 408 --------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                        +   YII +  D   I+DQHAAHER+++EK    +   KI ++ +  
Sbjct: 358 LAKKISDIRIVGTLFSTYIIVEKEDVFYIIDQHAAHERILYEKFTSQYE--KIQTRQVTF 415

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P +++L   +  L+ +  E L++LG   E FG N+I +RE+P IL +    QL  DI+++
Sbjct: 416 PIVVELQPRDLELVHQEKELLNKLGYVFEEFGNNSIILREVPVILGQPEARQLFIDIVEK 475

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           + D      +  + ENI+  MAC  ++++   +   E+++L  +++   N   C HGRP 
Sbjct: 476 LKDKELINKISLKEENII-MMACKAAVKAMDNLSEKEIHKLFEDLKITENPYTCPHGRPV 534

Query: 580 FIKLKLSDIEKLFGR 594
            I +  + +EK+F R
Sbjct: 535 IIAITKTQLEKMFKR 549


>gi|254363110|ref|ZP_04979164.1| DNA mismatch repair protein MutL [Mannheimia haemolytica PHL213]
 gi|153094997|gb|EDN75560.1| DNA mismatch repair protein MutL [Mannheimia haemolytica PHL213]
          Length = 627

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/563 (27%), Positives = 272/563 (48%), Gaps = 46/563 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    +I DNG G
Sbjct: 10  IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANTIQIDIEKGGSQLIRIRDNGCG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ +++P+A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SR  +     Q
Sbjct: 70  ISKQDLPLALARHATSKISSLEDLEAILSLGFRGEALASISSVSRLTLTSRTAEQTEAWQ 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G +++  ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 130 AYAQGREMAVEIQPASHPIGTTIEVANLFFNTPARRKFLRTDKTEFAHIDEVVRRIALAK 189

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P +SF+ S       +      ++     +R++ + G++FI ++  ++ +  ++ L G+ 
Sbjct: 190 PNISFSLSHNGKIVRQYRKVQDNSVEQQQKRVAAICGDEFIQHSTYIDRQHGDLHLHGWV 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   R   +  Y ++NGR ++DK I   IR AY ++I  G YP  V+ L++DP  VDV
Sbjct: 250 GSPALARLQNDLCYSYVNGRMMRDKTINHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI---------------STSSVLSKKMI 342
           NVHPAK  +RF    ++ +FI+Q +  ++ +                     +       
Sbjct: 310 NVHPAKHEVRFHQGRLVHDFILQGVLNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQ 369

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--ESE 400
           + F    AP+        +  ++    F + N +S++      +    + +      +++
Sbjct: 370 NIFVSQTAPQAAEFTQKNASRSSYTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQ 429

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH-------------ERLIFE------ 441
           +T  +        H+   +SQ    +  +  H +              E   F       
Sbjct: 430 STLVEPKTEPQTEHKTEAVSQKITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLAT 489

Query: 442 --KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIA 496
             +++      K  SQ LL P  + L + +     +  E+L +LG             + 
Sbjct: 490 LAELKLKLQLEKGQSQALLIPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLT 549

Query: 497 IREIPAILSKKNIPQLLRDIIDE 519
           +  +P  + ++N+ QLL  + ++
Sbjct: 550 VLSVPQAVREQNLQQLLFALFNQ 572


>gi|320155085|ref|YP_004187464.1| DNA mismatch repair protein MutL [Vibrio vulnificus MO6-24/O]
 gi|319930397|gb|ADV85261.1| DNA mismatch repair protein MutL [Vibrio vulnificus MO6-24/O]
          Length = 664

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/642 (26%), Positives = 286/642 (44%), Gaps = 79/642 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ +++++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATKIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  SGIVKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYTEGRDMQVKLQPTAHPIGTTVEVVDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T         +      +    +R++ V G+ F+   +++  +   + L G+ 
Sbjct: 181 SRFDVSITLRHNGKVIRQYRAAHNDLQAEKRLATVCGQAFVRCMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLKPEQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRN----------------------------------------------- 310
           NVHPAK  +RF                                                 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALASALAQSDSIEQPQINESAFHYQAEPEVAPQGSFP 360

Query: 311 ------PTIIRNFIIQSI---QKAINKKGISTSSVLSKKMISSFHQDNAPKTH------- 354
                 P  + + I ++    +KA  ++ +   + L     S   ++ AP  H       
Sbjct: 361 AESNEVPQAVYHAIEKAPAYPRKAGQEQQLQPVAPLESSFSSEQGREVAPAPHNERNAWM 420

Query: 355 ---LPKYATSLTNTQE----KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL- 406
               P   T+ +N  E        ++   +  +LL + D            S A+  Q  
Sbjct: 421 ESRSPARHTTSSNQSERYGEPAPSKQQVKAYAELLHTPDFPSQNVECHPSPSIASPVQEL 480

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A + + Q Y+++ T  G  ++    A    I  ++  D     + SQ LL P  + L 
Sbjct: 481 GKAVSVVAQRYLLTTTKAGCQLISLARAEFYRILGQLNGDKA--PLKSQPLLVPLSLKLE 538

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +G      EH +   R+GI  +     A+ +  +PA L ++N+  L+ D++      +  
Sbjct: 539 KGLVHAAQEHQDRFARMGILFKMRNEKALMVMGVPAPLRQQNLQLLIPDLLSYAASQAQK 598

Query: 527 YTLQDRIENILATMACYGS-IRSGRKMQSIEMNRLLREMEKN 567
             L      +   +A   + ++S   +   E  +++ E+E+ 
Sbjct: 599 EELAQNDTAMAQWLALRVAKVKSHYTLS--EAIQIISELEQL 638


>gi|52425571|ref|YP_088708.1| DNA mismatch repair protein [Mannheimia succiniciproducens MBEL55E]
 gi|81825511|sp|Q65SD7|MUTL_MANSM RecName: Full=DNA mismatch repair protein mutL
 gi|52307623|gb|AAU38123.1| MutL protein [Mannheimia succiniciproducens MBEL55E]
          Length = 631

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/596 (28%), Positives = 288/596 (48%), Gaps = 64/596 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SR++  I  GG +  +I DNG
Sbjct: 1   MPIHILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRIQIDIENGGATLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  LGIAKEDLSLALARHATSKISCLDDLEAILSLGFRGEALASISSVSRLTLTSRTAEQKEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTEKTEFAHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P+++FT +       +           +R+S + GEDF+ NA++++ K + + L G+ 
Sbjct: 181 AKPQIAFTLTHNGKILRQYKSAVEIEQKLKRVSAICGEDFVQNALQIDWKHDNLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P F+R   +  Y ++NGR ++DK I   IR AY + +   +YP  VL L++DP +VDV
Sbjct: 241 AVPNFHRPQNDLSYSYVNGRMIRDKVINHAIRQAYGDYLTNEQYPAFVLYLDLDPNEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-------KKGISTSSVLSKKMISSFHQ--- 347
           NVHP K  +RF    +I +FI Q +  A+        +     S+   ++  +++H    
Sbjct: 301 NVHPTKHEVRFHQARLIHDFICQGVGNALQSEQADFARYDTPASADEIQEPAANWHSSLI 360

Query: 348 ------------------------------------DNAPKTHLPKYAT-SLTNTQEKLF 370
                                                     ++P ++T S++ T++KL+
Sbjct: 361 KPNRSAAGHNIFESASDKNISGANTYSHGSAKINRFSTKFAENIPHFSTKSVSKTEQKLY 420

Query: 371 -----LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
                          +    + ++ ++    ++S     Q   + A +    ++ Q    
Sbjct: 421 GNLLTTPAEAKKNTAINAESENSFEKNVSTPQQSTQLSGQFLHSLALVKNQALLLQQGQD 480

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
             ++   A  ++L FE          I  Q LL P +  L E + A   +      + G 
Sbjct: 481 FYLLPL-AKLQKLKFE---LTLQQPDIAQQPLLIPILFRLNERQLAQWQKQKNFFLQSGF 536

Query: 486 KA-ERFGPNAIAIREIPAILSKKNIPQLLRDIIDE----IIDSSTTYTLQDRIENI 536
           +  E    + I + ++P+ L ++N+   +  +++E    I D  T    Q ++  I
Sbjct: 537 EFDENPAQHRITLNKVPSCLRQQNLQGCVIRLLEENHEKISDFLTALCNQLQLNEI 592


>gi|292656068|ref|YP_003535965.1| DNA mismatch repair protein MutL [Haloferax volcanii DS2]
 gi|291371246|gb|ADE03473.1| DNA mismatch repair protein mutL [Haloferax volcanii DS2]
          Length = 563

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/614 (26%), Positives = 265/614 (43%), Gaps = 80/614 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L  +  ++IAAGE++ RP+  + ELIEN+LDA +  VE  + G G    ++ D+G G
Sbjct: 2   IHRLDPETRSKIAAGEVVARPASVVVELIENALDAGAETVEIDVDGDGTDRIRVADDGRG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSI-GAVSHLTLMSRPPQNNTGA 119
           M   +  +AV+RH TSK+  +DD   + T GFRGEALPSI  A + L L +    +  G 
Sbjct: 62  MAEADAALAVERHTTSKLAAADDLETVETLGFRGEALPSIAAAAARLELTTN-DGSPRGT 120

Query: 120 QIAIS-------GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
           ++ +        GE+  +V P     GT V+V  LF   PAR   L S + E   ++ V+
Sbjct: 121 RVVVDGGENAPGGERDKTVSPAGRARGTTVDVTGLFADRPARRKSLASSKAEFARVSAVV 180

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--------AVEL 224
            R A+  P V F                    F + +  V G D  ++         VE 
Sbjct: 181 TRYALTRPDVRFVLRHDGRETLT---TPGTDRFADALLAVYGRDAASHASTFDAAREVEA 237

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
             ++  + + G    P   R   +  +V +NGR + +  +   +   Y   +P GR PV 
Sbjct: 238 AGETATVEVDGALCHPEVTRSRRDHVHVSVNGRALAEPRLRRAVADGYGTLLPDGREPVG 297

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           V+ L + P  VD NVHPAK  + FR+   +   +  S++ A++   +  S  ++  + SS
Sbjct: 298 VVRLRLPPAWVDHNVHPAKDEVGFRDADAVAEAVEASVRDALSTADLRRSGEVAMDLDSS 357

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
                      P  A S+                                         +
Sbjct: 358 L---------APVEAASV-----------------------------------------F 367

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  +    Y++ +  D L++VDQHAAHER+ +E++R+   S  I S  +  P  + 
Sbjct: 368 DDLRVIGRFRGLYLLCEADDELLVVDQHAAHERINYERLREAVESAGIDSAAVDPPATVS 427

Query: 465 LLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           L   + AL+  + + + +LG +     E  G     +  +PA L +   P  L D++ ++
Sbjct: 428 LSPADAALLDANRDPVEKLGFRVVEFGEGGGTGTYRVEAVPAPLGRPFAPDALADVVADV 487

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                        + +L  +AC+ SI++G  +   E  RL+  +        C HGRPT 
Sbjct: 488 ASGDHADP----RDELLKDLACHPSIKAGDDLTDDEATRLVERLGSCETPYTCPHGRPTV 543

Query: 581 IKLKLSDIEKLFGR 594
           + +      + FGR
Sbjct: 544 LSIDEETFVRGFGR 557


>gi|165977401|ref|YP_001652994.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|238687528|sp|B0BTY3|MUTL_ACTPJ RecName: Full=DNA mismatch repair protein mutL
 gi|165877502|gb|ABY70550.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 622

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/559 (29%), Positives = 268/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 66  IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPAGQAEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 126 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 186 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 246 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 305

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ ++        
Sbjct: 306 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQAEIDLTHQVNEPLPSYQRNTNRMAAGG 365

Query: 349 -----------------NAPKTHLPKYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                +H+P Y+     ++ + +K + +      N      D  
Sbjct: 366 NSFLASQQAVEFTENFAKPTASHMPNYSPRTSGVSKSAQKWYGELVSQPQNQSDNIQDLI 425

Query: 389 YSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             + N        +  E        +  A        I+      L    Q         
Sbjct: 426 EPKANFAPVIFAQEIDEAEPKPTQVVSAAIGHWQPLAIVQNQALLLKAEQQFYLLSLEKL 485

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R     TK  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 486 ARLRFQTQLTKGESQALLIPLNLSLDEQQTQRWQTLKTPLAELGFAISEKTWQGQIRLSV 545

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 546 TQVPRLLREQNLQQILLSL 564


>gi|27364692|ref|NP_760220.1| DNA mismatch repair protein [Vibrio vulnificus CMCP6]
 gi|31076809|sp|Q8DCV0|MUTL_VIBVU RecName: Full=DNA mismatch repair protein mutL
 gi|27360837|gb|AAO09747.1| DNA mismatch repair protein MutL [Vibrio vulnificus CMCP6]
          Length = 664

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/642 (26%), Positives = 285/642 (44%), Gaps = 79/642 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ +++++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATKIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  SGIVKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYTEGRDMQVKLQPTAHPIGTTVEVVDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T         +      +    +R++ V G+ F+   +++  +   + L G+ 
Sbjct: 181 SCFDVSITLRHNGKVIRQYRAAHNDLQAEKRLATVCGQAFVRCMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLKPEQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRN----------------------------------------------- 310
           NVHPAK  +RF                                                 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALASALAQSDSIEQPQINESAFHYQAEPEVAPQGSFP 360

Query: 311 ------PTIIRNFIIQSI---QKAINKKGISTSSVLSKKMISSFHQDNAPKTH------- 354
                 P  + + I ++    +KA  ++ +   + L     S   ++ +P  H       
Sbjct: 361 AESNEVPQAVYHAIEKAPAYPRKAGQEQQLQPVAPLESSFSSEQGREVSPAPHNERKAWM 420

Query: 355 ---LPKYATSLTNTQE----KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL- 406
               P   T+ +N  E        ++   +  +LL + D            S A+  Q  
Sbjct: 421 ESRSPARHTTSSNQSERYGEPAPSKQQVKAYAELLHTPDFPSQNVECHPSPSIASPVQEL 480

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A + + Q Y+++ T  G  ++    A       ++  D     + SQ LL P  + L 
Sbjct: 481 GKAVSVVAQRYLLTTTKAGCQLISLARAEFYRTLGQLNGDKA--PLKSQPLLVPLSLKLE 538

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +G      EH +   R+GI  +     A+ +  +PA L ++N+  L+ D++      +  
Sbjct: 539 KGLVHAAQEHQDRFARMGILFKMRNEKALMVMGVPAPLRQQNLQLLIPDLLSYAASQAQK 598

Query: 527 YTLQDRIENILATMACYGS-IRSGRKMQSIEMNRLLREMEKN 567
             L      +   +A   + ++S   +   E  +++ E+E+ 
Sbjct: 599 EELAQNDTAMAQWLALRVAKVKSHYTLS--EAIQIISELEQL 638


>gi|225619059|ref|YP_002720285.1| D mismatch repair protein [Brachyspira hyodysenteriae WA1]
 gi|225213878|gb|ACN82612.1| D mismatch repair protein [Brachyspira hyodysenteriae WA1]
          Length = 615

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/617 (28%), Positives = 303/617 (49%), Gaps = 31/617 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL + + N+IAAGE+IERP+  +KEL+EN++D+ +S +E  +   G     + D+G G
Sbjct: 5   IMKLQQSVANRIAAGEVIERPASMLKELLENAIDSGASNIEVSVEEAGIKSMIVEDDGNG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+A+  H TSKI   +D  +I+T GFRGEAL SI  V++L ++S+  + + G +
Sbjct: 65  IRFDELPLAITHHATSKIHSIEDLDSIYTLGFRGEALASISDVTNLEIVSKSVEESNGGK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I + G KI   +P A + GT +  ++LFF IPAR  FLK    E  L+ +V    A+  P
Sbjct: 125 IVVEGGKIIEHKPAAASQGTKIIAKNLFFNIPARYKFLKHISREFFLVKEVFDMEALVQP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQ-VIGEDFINNAVELNEKSNEITLQGYTGI 239
           K+S            ++         ERI   +   +   N +E+  + +++ + G    
Sbjct: 185 KISMKLKNNGK---VVSSYIKVDTLKERIENYISDSNIFRNLIEVEIEKDDVLIYGLFSN 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              ++      ++F+N R ++++ +   I+ AY+  IP  RYP   L + ID  ++DVNV
Sbjct: 242 SKISQSMRKNNFIFLNNRPIENRVLAYAIKNAYSNAIPKERYPFFFLYINIDSSKIDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLPK 357
           HP+K  +R +N   I   +  +I   IN      S  +   +              +   
Sbjct: 302 HPSKKEVRIKNEREISGILYNTIVNNINSGNNLDSVNIEVDLDKDITPTFPIQQNNNYNT 361

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ------------ 405
           Y TS  NTQ    ++ +  S ++     D    E+++ +EE+                  
Sbjct: 362 YNTSNYNTQSSNEIKYDNTSYSNNNYDKDDLNLENSNIIEENNLNKEINLNNNNFSSNNI 421

Query: 406 ----LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
                  A  Q+  +YI+++    + I+DQHAA+ERL +E++ +   S KI  + LL P 
Sbjct: 422 EFGEYTRAIGQVFSSYIVAERGGEMYIIDQHAAYERLNYERIYKTLMSKKIEYEKLLIPC 481

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNA----IAIREIPAILSKKNIPQLLRDII 517
            I+  + E  ++    E +  LGIK E    ++         IP     + I ++++DI+
Sbjct: 482 EIEYRDYEIDILNASKESIESLGIKFEANSKHSIIIEDIPIYIP---RNQKIEKIIKDIL 538

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D  I       L+  I++  +T++C  S ++G K+ + +M  LL  +E+    + C HGR
Sbjct: 539 DIYISKGDNNNLEKVIKHTCSTISCKYSPKAGDKLSNSDMQTLLDLLEEENILTNCPHGR 598

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  ++L    ++K F R
Sbjct: 599 PFVLRLSKEYLDKKFFR 615


>gi|37681257|ref|NP_935866.1| DNA mismatch repair protein [Vibrio vulnificus YJ016]
 gi|61214242|sp|Q7MH01|MUTL_VIBVY RecName: Full=DNA mismatch repair protein mutL
 gi|37200008|dbj|BAC95837.1| DNA mismatch repair enzyme [Vibrio vulnificus YJ016]
          Length = 664

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 285/642 (44%), Gaps = 79/642 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ +++++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATKIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  SGIVKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYTEGRDMQVKLQPTAHPIGTTVEVVDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T         +      +    +R++ V G+ F+   +++  +   + L G+ 
Sbjct: 181 SRFDVSITLRHNGKVIRQYRAAHNDLQAEKRLATVCGQAFVRCMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLKPEQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRN----------------------------------------------- 310
           NVHPAK  +RF                                                 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALASALAQSDSIEQPQINESAFHYQAEPEVAPLGSFP 360

Query: 311 ------PTIIRNFIIQSI---QKAINKKGISTSSVLSKKMISSFHQDNAPKTH------- 354
                 P  + + I ++    +KA  ++ +   + L     S   ++ AP  H       
Sbjct: 361 AESNEVPQAVYHAIEKAPAYPRKAGQEQQLQPVAPLESSFSSEQGREVAPAPHNERNAWM 420

Query: 355 ---LPKYATSLTNTQE----KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL- 406
               P   T+ +N  E        ++   +  +LL + D            S A+  Q  
Sbjct: 421 ESRSPARHTTSSNQSERYGEPAPSKQQVKAYAELLHTPDFPSQNVECHPSPSIASPVQEL 480

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A + + Q Y+++ T  G  ++    A    I  ++  D     + SQ LL P  + L 
Sbjct: 481 GKAVSVVAQRYLLTTTKAGCQLISLARAEFYRILGQLNGDKA--PLKSQPLLVPLSLKLE 538

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +G      EH +   R+GI  +     A+ +  +PA L ++N+  L+ D++      +  
Sbjct: 539 KGLVHAAQEHQDRFARMGILFKMRNEKALMVMGVPAPLRQQNLQLLIPDLLSYAASQAQK 598

Query: 527 YTLQDRIENILATMACYGS-IRSGRKMQSIEMNRLLREMEKN 567
                    +   +A   + ++S   +   E  +++ E+E+ 
Sbjct: 599 EEQAKNDTAMAQWLALRVAKVKSHYTLS--EAIQIISELEQL 638


>gi|170728497|ref|YP_001762523.1| DNA mismatch repair protein [Shewanella woodyi ATCC 51908]
 gi|238688669|sp|B1KHV0|MUTL_SHEWM RecName: Full=DNA mismatch repair protein mutL
 gi|169813844|gb|ACA88428.1| DNA mismatch repair protein MutL [Shewanella woodyi ATCC 51908]
          Length = 614

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/558 (29%), Positives = 269/558 (48%), Gaps = 44/558 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MTIQILSPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIDKGGSKLIKIQDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSK+S  DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 61  SGIPKSELNLALSRHATSKLSTLDDLDAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++    P A   GT +E  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGSDMAVKVIPAAHPVGTTIEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P++ FT              +    +  R++Q+ G++F   A+E++ +   +TL GY 
Sbjct: 181 VKPEIHFTLKHNGKQVRNYRPANNQDQYLMRLAQICGKNFAEQAIEIDCQHEGLTLSGYI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F    ++  + ++NGR ++D+ +   +R A++E    G     VL+LEI P QVDV
Sbjct: 241 QSPFFTSPASDTQFFYVNGRLIRDRLVNHAVRQAFSEH-GTGELASYVLMLEIAPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT---- 353
           NVHPAK  +RF     + ++I+Q++Q A+ +   ++ S+  +K++     D   K     
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYILQALQSALMQVARASISLPEEKLVEFVEDDWHSKPLSTG 359

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----------DPTYSEDNDPVEESEATH 403
            + +   S   TQ K   +     +     S           + +     +    SE   
Sbjct: 360 RVSEADPSNYATQSKFDEKPRESGSQGQSSSISAPSSYSRGGEYSARSQPELPSASEIAS 419

Query: 404 YQLGI-------------------ACAQIHQNYIISQTTD-GLVIVDQHAAHERLIFEKM 443
           Y   +                       +   Y +    +  L+ +D  A   + + ++ 
Sbjct: 420 YTQLLKTPQTAQASKLVNSDLKTPMPPVLAGQYWVYAGDELSLLPIDIVA---KWLVKRD 476

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNAIAIREIPA 502
                   + SQ LL P  I + E     I E ++ L +LGI+   R G   + I+++P 
Sbjct: 477 ILAKIDNGLVSQPLLMPVSIKVDEDWLNTIDEREQLLRQLGIEITIRLGQ--LIIKKVPP 534

Query: 503 ILSKKNIPQLLRDIIDEI 520
            L +  +  ++ +++  +
Sbjct: 535 YLRQSQLVTVIPELLQWV 552


>gi|315651394|ref|ZP_07904419.1| DNA mismatch repair protein MutL [Eubacterium saburreum DSM 3986]
 gi|315486353|gb|EFU76710.1| DNA mismatch repair protein MutL [Eubacterium saburreum DSM 3986]
          Length = 652

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/657 (23%), Positives = 278/657 (42%), Gaps = 73/657 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  +++IAAGE++ERP+  +KE++ENS+DA SS +   I  GG    +ITDNG G
Sbjct: 2   INILDKNTVDKIAAGEVVERPASIVKEILENSIDAGSSLITVEIKNGGTDLIRITDNGCG 61

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + + E+  A  RH TSKI    D  +I + GFRGEAL SI AVS   ++++     TG +
Sbjct: 62  IAASEVKKAFLRHATSKIISDKDLISIKSLGFRGEALSSIAAVSRCEMITKTKDELTGVR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G        +    GT + +RD+F+  PAR  FLKS   E   I++++ ++A++  
Sbjct: 122 YCIEGGTEVEYEEIGAPDGTSIIIRDIFYNTPARRKFLKSASTEGAHISELVEKLAMSNT 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F F +    + + N    +GN  + + Q+ G++       ++ K + I + G    P
Sbjct: 182 NIAFKFISNGQIKLQTN---GSGNLKDIVYQLYGKEISKALCNVDYKKDGIKISGVVARP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + N   +F+NGR ++D  I   I   + + +   +YP   L  E+    VDVNVH
Sbjct: 239 EVTRSSRNLENIFVNGRYIKDNIISKAIEDGFGDRLMQHQYPFCALKFEL--DGVDVNVH 296

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RF +   + +   +++++    +       + K         + P+    K   
Sbjct: 297 PRKMEVRFSDRNFVYDNTKEAVEEIFTAQSAIREVPIGKSSNEKKIFVSTPEPFENKRRD 356

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP-----VEESEATHYQLGIACAQIHQ 415
                Q     ++   S++D +    P  +  N       +++ ++    L I    I  
Sbjct: 357 LTGEFQNTFKDKKTYKSSDDEINWTVPKENMYNPRDDMSLIKDEKSNSMYLDINDFNILN 416

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM- 474
             I    +D  V  D    ++      +  +   ++++     + + + ++         
Sbjct: 417 TDISDTKSDTSVSTDNAVCNKNFEVGNVSNNIKPSQLSFFDSESKKYMKVVGQVFDTYWI 476

Query: 475 -EHDEDL--------------HRLGIKAERFGPNAIAIREI--PAILSKKNIPQ------ 511
            + +++L               RL    +    N ++ + I  P I++  +I Q      
Sbjct: 477 VQLEKELYIIDQHAAHEKVMYERL---LKESKENRLSSQMINPPVIVTLTDIEQNVLKDH 533

Query: 512 --LLRDIIDEIIDSST-------------TYTLQDRIENIL------------------- 537
               R I  +I +                +    +    +L                   
Sbjct: 534 MDEFRKIGFDIEEFGGKEYKINSIPNIFPSIPKAELFNEMLSDSTNYDIISPSELILAKV 593

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           A+MAC  +I+   ++  +E N L  E+    N   C HGRPT IK+   +IEK F R
Sbjct: 594 ASMACKAAIKGNMRISLLEANELFDELLSLDNPYNCPHGRPTVIKMTKQEIEKKFKR 650


>gi|288937531|ref|YP_003441590.1| DNA mismatch repair protein MutL [Klebsiella variicola At-22]
 gi|288892240|gb|ADC60558.1| DNA mismatch repair protein MutL [Klebsiella variicola At-22]
          Length = 619

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 162/614 (26%), Positives = 275/614 (44%), Gaps = 61/614 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  SGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVARLTLTSRTAEQQEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLNHNGKVIRQYRAVAQDGQRERRLGTICGAAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPLHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  +            +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLAEKDDPPTPRQMPENRIAAGGN 360

Query: 357 KYATS-----------------------------LTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++A                                 + Q     Q+  L    L     P
Sbjct: 361 QFARPSEAREAATRFSITSSREPAASGGSSGGASWPHAQPGYQKQQGALYRQLLDTPAAP 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             ++ +    E        G     +  +  + +    L ++    A   L   ++    
Sbjct: 421 RPAQPSAAPAELAGHSQSFGRVLTIVGGDCALLEREGSLALLSLTVAERWLRQAQL--TP 478

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            +  + +Q LL P  + + EGE   +      L +LGI+        + +R +P  L ++
Sbjct: 479 GTEAVCAQPLLIPLRLKVTEGEKRALAAAQSALAQLGIEL-HTDALHVTVRAVPLPLRQQ 537

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN-------RL 560
           N+  L+ ++I  +   +        + NI   MA        R + S + +        L
Sbjct: 538 NLQILIPELIGYLAQQNAFD-----VGNIAQWMA--------RNLTSEQASWNMAQAIAL 584

Query: 561 LREMEKNPNSSQCN 574
           L ++E+      C 
Sbjct: 585 LADVERL-----CP 593


>gi|37528402|ref|NP_931747.1| DNA mismatch repair protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81833855|sp|Q7MYT9|MUTL_PHOLL RecName: Full=DNA mismatch repair protein mutL
 gi|36787840|emb|CAE16955.1| DNA mismatch repair protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 631

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/622 (26%), Positives = 279/622 (44%), Gaps = 65/622 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    ++ DNG
Sbjct: 1   MAIKILPPQLANQIAAGEVVERPASVVKELVENSLDAGANRIDIEIERGGVKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  CGINHQELALALARHATSKIATLDDLEAIISMGFRGEALASISSVSRLTLTSRTEEQHEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   G+ VEV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGSTVEVLDLFYNTPARRKFLRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V            +         +  R+  + G  F+  A+ L+ + ++++++G+ 
Sbjct: 181 ARLDVLINLHHNGKLVRQYRPAKDESQYERRLVSICGTAFMQRALSLSWQHDDLSIKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P     + +  Y ++NGR ++D+ I   IR AY + +   + P  VL L +DP QVDV
Sbjct: 241 VDPMNTEASGDIQYCYVNGRMMRDRLINHAIRQAYQDLLRGEQQPAYVLYLGVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-SVLSKKMISSFHQDNAPKT--- 353
           NVHPAK  +RF    ++ +FI Q +   + ++G      +   +   ++  +N P     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGVIAVLKQRGSGAELDIACCEPAPAWEPENRPSAGGN 360

Query: 354 --HLPKYATSLTNTQEKLFLQ-----------ENRLSTNDLLPSDDPTYSEDNDPVEESE 400
                  ATS+  +  K  L            ENR    D          +     E  E
Sbjct: 361 HFSRQSNATSVAASSPKEVLSSKGNMGGSRGGENRQYHGDHYQKRQGEVYQKLMQSEPEE 420

Query: 401 ATH-------------------------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                                       +  G   +     Y + ++  GL ++    A 
Sbjct: 421 KRELFPARTAPVMAEKATSAPVQVKNSNHSFGKVLSIYSPCYALIESPLGLGLLSLPVAE 480

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
             L   ++        + SQ LL P  + L + E   +  + + L   GI+A      A 
Sbjct: 481 RWLRQAQL--APTEQGLKSQPLLIPLKLSLSKEEAGALNRYSDLLGSFGIEASVSHGKA- 537

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG---RKM 552
            +  +   L ++N+P+L+ +++  +    +        E ++  +A +     G      
Sbjct: 538 TLCAVSLPLRQQNLPKLIPELLGYLAQQPSASA-----EQVVTWLARH----IGSEYETW 588

Query: 553 QSIEMNRLLREMEKNPNSSQCN 574
              +  +LL ++E+      C 
Sbjct: 589 NVAQAVQLLADVERL-----CP 605


>gi|303250340|ref|ZP_07336539.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650810|gb|EFL80967.1| DNA mismatch repair protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 622

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/559 (29%), Positives = 268/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 66  IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPAGQAEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 126 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 186 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 246 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 305

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ +D        
Sbjct: 306 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQAEIDLTHQVNEPLPSYQRDTNRMAAGG 365

Query: 349 -----------------NAPKTHLPKYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                +H+P Y+     ++ + +K + +      N      D  
Sbjct: 366 NSFLASQQAVEFTENFAKPTASHMPNYSPRTSGVSKSAQKWYGELVSQPQNQSDNIQDLI 425

Query: 389 YSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             + N        +  E        +  A        I+      L    Q         
Sbjct: 426 EPKANFAPVIFAQEIDEAEPKPTQVVSAAIGHWQPLAIVQNQALLLKAEQQFYLLSLEKL 485

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R     TK  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 486 SRLRFQTQLTKGESQALLIPLNLSLDEQQTQRWQTLKTPLVELGFAISEKTWQGQIRLSV 545

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 546 TQVPRLLREQNLQQILLSL 564


>gi|224536053|ref|ZP_03676592.1| hypothetical protein BACCELL_00917 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522336|gb|EEF91441.1| hypothetical protein BACCELL_00917 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 564

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/564 (26%), Positives = 254/564 (45%), Gaps = 56/564 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + + NQIAAGE+I+RP+  IKEL+EN++DAE+  +  ++   GK+  Q+ D+G G
Sbjct: 5   IHLLPDSVANQIAAGEVIQRPASVIKELVENAIDAEAQEIHVLVTDAGKTCIQVIDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI    D   + T GFRGEAL S+ AV+ + L +R      G +
Sbjct: 65  MSETDARLAFERHATSKIRQATDLFALRTMGFRGEALASVAAVAEVELKTRMANEELGTR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I+G K+ S   V+   G+   +++LFF IPAR  FLK+   E + I     R+A+ +P
Sbjct: 125 IVIAGSKVESQEAVSCPKGSNFSIKNLFFNIPARRKFLKANSTELSNILTEFERIALVHP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F   +  +  + +          +RI  V G+    + + ++  +  + + G+   P
Sbjct: 185 EVAFYLYSNDTELFNLPAMP----LRQRILAVFGKKLNQHLLSVDVDTTMVKVSGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R      Y F+NGR ++  +    +  AY + IP G      +  ++DP  +DVN+H
Sbjct: 241 ETARKKGAHQYFFVNGRYMRHPYFHKAVMDAYEQLIPAGEQISYFIYFDVDPANIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS---KKMISSFHQDNAPKTHLPK 357
           P K+ I+F N   I   +  ++++++ K     S          I +F Q    +     
Sbjct: 301 PTKTEIKFENEQAIWQIVSAAVKESLGKFNAVPSIDFDTEGMPDIPAFDQTRPIEPPKVH 360

Query: 358 YATSLTN--------------------TQEKLFLQENRLSTNDLLPSDDP---------- 387
           Y +                          E L+    + S  +    ++P          
Sbjct: 361 YNSDFNPFKTSSASSYSGGGSYSRPKVDWEGLYDGLEKASKMNTPMEEEPFVDETDWTSA 420

Query: 388 -----TYSEDNDPVEESEATHYQ------------LGIACAQIHQNYIISQTTDGLVIVD 430
                   E    V+E+E                  G    Q    +I++    GL+++D
Sbjct: 421 PASVDMSEERTPYVQETETVSSPSASLYTNEPAVEKGAQHFQFKGRFILTSVKSGLMLID 480

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QH AH R++FE+        +  SQ +L PEI+ L   E A++    ED   +G +    
Sbjct: 481 QHRAHIRVLFERYMNQIRQKQGVSQGVLFPEIVQLPASEAAVLESIMEDFSAVGFELTPL 540

Query: 491 GPNAIAIREIPAILSKKNIPQLLR 514
           G  + AI  IP+ +   N  +L+R
Sbjct: 541 GGGSYAINGIPSGIEGLNPVELVR 564


>gi|262275157|ref|ZP_06052968.1| DNA mismatch repair protein MutL [Grimontia hollisae CIP 101886]
 gi|262221720|gb|EEY73034.1| DNA mismatch repair protein MutL [Grimontia hollisae CIP 101886]
          Length = 653

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/630 (25%), Positives = 275/630 (43%), Gaps = 68/630 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MAIQILPARLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIEKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  SGIAKEELELALSRHATSKITCLDDLEAIISLGFRGEALASISSVSRLTLTSRTVTQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +   V+P A   GT VEV DLFF  PAR  FL++++ E   I ++++R+A+
Sbjct: 121 WSAYAEGRDMAVKVKPAAHPVGTTVEVVDLFFNTPARRKFLRTDKTEFGHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+ T     +   +    + +    +R++ V G  F+  AVE++ +   +TLQG+ 
Sbjct: 181 SRFDVAITLRHNGAIVRQYRAATNDVQREKRLAAVCGPQFVKTAVEVSLEHQGLTLQGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  + F+N R ++DK I   IR  Y  ++   ++   VL ++IDP QVDV
Sbjct: 241 CTPEGARAQNDIQHCFVNKRMMKDKLINHAIRQGYEASLRPDQFAAYVLYIDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------------- 336
           NVHPAK  +RF    ++ +FI Q++  A+ +       +                     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVADALMQVTAEPEPISALNFADNETAGHPAQQAVEG 360

Query: 337 ---------LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                     +    + + +     +  P  A+  + +        +     D L    P
Sbjct: 361 DEGVKDTAYSNYPGQAEYSEWRPQASGQPARASGFSQSSAGRSSGGSSGQRCDFLSGSAP 420

Query: 388 TYSEDNDP---------------VEESEATHYQL---------------GIACAQIHQNY 417
           +  E N                 + E+ A                    G A   ++  Y
Sbjct: 421 SRREQNVYQSLMTTPVVPDPVREIAEASAVFTPSTPQAPVSTGHAAQGLGKALTVVNAKY 480

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           ++ Q  +G+ ++D  AA    +    RQ      + +Q LL P+ +     E  L+  H+
Sbjct: 481 LLLQREEGIALLDLDAAAYLSVLGTFRQAGLEEGLKAQPLLIPQALPASAEELELVALHE 540

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             L + GI   +   + + +  +       N+ Q +  ++  +  S     +      + 
Sbjct: 541 PLLQQFGILLRKKSASQVMVMAVCQPFRHHNLQQFIPALMAFLTRSGKKLDVSSLSTWLT 600

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
                  +++        +   LL E+E  
Sbjct: 601 G-----QAVQKTDVYSLSQSVTLLTELENC 625


>gi|307253647|ref|ZP_07535514.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858883|gb|EFM90929.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 661

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/559 (29%), Positives = 268/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 45  IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 104

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 105 IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPAGQAEAWQ 164

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 165 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 224

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 225 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 284

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 285 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 344

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ +D        
Sbjct: 345 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQAEIDLTHQVNEPLPSYQRDTNRMAAGG 404

Query: 349 -----------------NAPKTHLPKYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                +H+P Y+     ++ + +K + +      N      D  
Sbjct: 405 NSFLASQQAVEFTENFAKPTASHMPNYSPRTSGVSKSAQKWYGELVSQPQNQSDNIQDLI 464

Query: 389 YSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             + N        +  E        +  A        I+      L    Q         
Sbjct: 465 EPKANFAPVIFAQEIDEAEPKPTQVVSAAIGHWQPLAIVQNQALLLKAEQQFYLLSLEKL 524

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R     TK  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 525 SRLRFQTQLTKGESQALLIPLNLSLDEQQTQRWQTLKTPLVELGFAISEKTWQGQIRLSV 584

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 585 TQVPRLLREQNLQQILLSL 603


>gi|225629843|ref|ZP_03787757.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591304|gb|EEH12430.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 544

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 186/551 (33%), Positives = 299/551 (54%), Gaps = 24/551 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA S  ++  I  GG++   +TD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIDIKIESGGRNLIIVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+  + N   
Sbjct: 61  NGVEKNDLELAFMRHATSKLSDNELIEIKHLGFRGEALPSIAAVSRIKLSSKAREANEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I+   GEKI  + P +++ GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SISYEGGEKIGELIPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K+   +   +   R+ +V  E+F  +++E+NE+ + I L G+  
Sbjct: 181 NYHIGFTLTSGNK---KLLKYAKQTSLFHRLCEV-EEEFQGSSLEINEEEDGIKLTGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NRG + Q Y F+NGR ++D  ++  +R AY + IP  RYP   L LEI   QVDVN
Sbjct: 237 KPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP KS +RF+N  +I   + + + KA++++  +  +   K   +     + P     + 
Sbjct: 297 VHPNKSEVRFQNKKLIYEIVTRGLIKALSRRIGTFLAHDQKMDSTLPDPFDKPNVQNERR 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT--------------HY 404
            +   N   K F   N    +    S    Y+       ++E                 +
Sbjct: 357 PSPFENQLIKEFASPNERVKSLSEQSKSFDYTGIQKLPSQAETMVLEKKVLEQVDLIESH 416

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            LG A  Q++  YII++  D L+IVDQHAAHERL++E ++     + +  Q LL PE ++
Sbjct: 417 PLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---QKSSVKRQKLLLPETVE 473

Query: 465 L-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +  +    +I  + + L  +G   E    N + ++EIPAIL   ++ ++L +I+D + + 
Sbjct: 474 IKNQAGMEMIEVYKDKLFEMGFDIEIKSENKVIVKEIPAILGAIDVKEMLINIVDRLTEI 533

Query: 524 STTYTLQDRIE 534
             T  ++D++ 
Sbjct: 534 EDTLPVEDKVN 544


>gi|322515243|ref|ZP_08068241.1| DNA mismatch repair protein MutL [Actinobacillus ureae ATCC 25976]
 gi|322118748|gb|EFX90954.1| DNA mismatch repair protein MutL [Actinobacillus ureae ATCC 25976]
          Length = 629

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/559 (28%), Positives = 265/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 13  IHFLPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 72

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 73  ISKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPDGQAEAWQ 132

Query: 121 IAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 133 AYAQGREMAVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFAHIDEVVRRIALAK 192

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G++FI NA+ ++ +  ++ L G+ 
Sbjct: 193 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDEFIQNAIHIDWQHGDLHLHGWI 252

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 253 GLPNISRLQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPAGNYPAFVVFLDIDPSQVD 312

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN------A 350
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ +D       +
Sbjct: 313 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQAEIGLTNQVNEPLPSYQRDTNRIAAGS 372

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
                P+ A   +    K         +     +         + V + +     +    
Sbjct: 373 NSFLTPQQAVEFSGNFAKPTASRATSYSPRTATTSKSAQKWYGELVSQPQTQSDNIQDLI 432

Query: 411 ---AQIHQNYIISQ-----------------TTDGLVIVDQHA---AHERLIF------- 440
              A         +                     L IV   A     E+  +       
Sbjct: 433 ESKANFAPVIFAQEIDEAEPKLAQAVSAAIGHWQPLAIVQNQALLLRAEQQFYLLSLEKL 492

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R      K  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 493 ARLRFIAQLEKGESQALLIPLNLSLDEQQTQRWQTLKTPLAELGFAISEKTWQGQIRLSV 552

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 553 TQVPRLLREQNLQQILLSL 571


>gi|190151315|ref|YP_001969840.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264668|ref|ZP_07546248.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916446|gb|ACE62698.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306869980|gb|EFN01744.1| DNA mismatch repair protein mutL [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 661

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/559 (29%), Positives = 268/559 (47%), Gaps = 45/559 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G
Sbjct: 45  IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIQIDIEKGGAQLIRIRDNGCG 104

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 105 IGKQDLALALARHATSKISSLEDLEMILSLGFRGEALASISSVSRLTLTSRPAGQAEAWQ 164

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G ++   ++P +   GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A 
Sbjct: 165 AYAQGREMEVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFTHIDEVVRRIALAK 224

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P + FT +       +      ++      R++ + G+DFI NA+ ++ +  ++ L G+ 
Sbjct: 225 PNIGFTLTHNGKTVRQYRKVQDNSVEQQQRRVAAICGDDFIQNAIHIDWQHGDLHLHGWI 284

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-IPLGRYPVVVLLLEIDPRQVD 296
           G+P  +R   +  Y ++NGR ++DK I   IR AY  T +P G YP  V+ L+IDP QVD
Sbjct: 285 GLPNISRPQNDLCYSYVNGRMMRDKTINHAIRQAYEATDMPEGNYPAFVVFLDIDPSQVD 344

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-------- 348
           VNVHPAK  +RF    ++ +FI+Q +Q A+  +     +    + + S+ ++        
Sbjct: 345 VNVHPAKHEVRFHQGRLVHDFILQGVQTALQGQAEIDLTHQVNEPLPSYQRNTNRMAAGG 404

Query: 349 -----------------NAPKTHLPKYAT---SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                                +H+P Y+     ++ + +K + +      N      D  
Sbjct: 405 NSFLASQQAVEFTENFAKPTASHMPNYSPRTSGVSKSAQKWYGELVSQPQNQSDNIQDLI 464

Query: 389 YSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
             + N        +  E        +  A        I+      L    Q         
Sbjct: 465 EPKANFAPVIFAQEIDEAEPKPTQVVSAAIGHWQPLAIVQNQALLLKAEQQFYLLSLEKL 524

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAI 497
            ++R     TK  SQ LL P  + L E +          L  LG         G   +++
Sbjct: 525 ARLRFQTQLTKGESQALLIPLNLSLDEQQTQRWQTLKTPLVELGFAISEKTWQGQIRLSV 584

Query: 498 REIPAILSKKNIPQLLRDI 516
            ++P +L ++N+ Q+L  +
Sbjct: 585 TQVPRLLREQNLQQILLSL 603


>gi|269792640|ref|YP_003317544.1| DNA mismatch repair protein MutL [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100275|gb|ACZ19262.1| DNA mismatch repair protein MutL [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 560

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/594 (26%), Positives = 253/594 (42%), Gaps = 41/594 (6%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L  ++  +IAAGE+IERP   +KEL+ENSLDA + RV   ++ GGK+   + D+G G+  
Sbjct: 3   LPPEVREKIAAGEVIERPLSVVKELLENSLDAGAKRVSVALSQGGKTSITVEDDGSGIPF 62

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           E++P+A+ RH TSKI   DD   I + GFRGEAL SI AVS L + SR      G  I  
Sbjct: 63  EDLPLALTRHATSKIRSVDDLYGIRSLGFRGEALASICAVSRLEIRSRRMDQELGGLIIA 122

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            G +I     V    GT+V+V +LFF +PAR  FLKS   E   I+ +++ M++      
Sbjct: 123 EGGEIVLHERVPHPVGTVVKVEELFFNLPARRKFLKSPSAEVRRISQLLQEMSLVNFHRR 182

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
              S+     ++        +  +    + G D     ++    S  +   G       +
Sbjct: 183 IQLSSDGRRVFE---SPGFESPRDAARHLWGCDPKEGFMDHQGLSCHLLWSG-------S 232

Query: 244 RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAK 303
                    F+NGR + D  + + I+ A       G + V ++   + P +VDVNVHP K
Sbjct: 233 GEGRGNLCFFVNGRRIHDPSLRAAIQGASGTL--GGDWVVFLV---VPPEEVDVNVHPTK 287

Query: 304 SYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
           S +RF+ P  + + + +     I                +   +D  P+   P     + 
Sbjct: 288 SEVRFKRPRDVFSLVHRGALSVIGGGLGLDGPPGQPIPPARDRRDEPPQVKSPSVEDRMP 347

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTT 423
                 F      +   ++ S                A          +  + Y+I +  
Sbjct: 348 RLDGPSFGGPQDPAKRLVVGS--------------PLAEMVSQVRYVGEAGRGYLIYEFP 393

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            G++ +D HAA ER+ +EK+ +          T +    +++ EG    +      L  L
Sbjct: 394 RGVIFLDPHAAEERITYEKIVRGSQGG-----TQVLAFPVEIPEGLAMSLEGLWGPLEDL 448

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII---DSSTTYTLQDRIENILATM 540
           G + +R G  A+ +  IP  LS  ++  +  + +       D       Q ++   +A+ 
Sbjct: 449 GFRFDREGSGAMRMVGIPQHLSSFDVSPM--EWLRWCSSGGDQEEGSGRQVKLLERMASR 506

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AC  S++ G  +      RL  E+ +      C HGR TF  L   DIE   GR
Sbjct: 507 ACRRSMKLGDSLDRDGARRLFEELLRCSVPQACPHGRSTFFVLPWEDIESRLGR 560


>gi|332708296|ref|ZP_08428277.1| DNA mismatch repair protein MutL [Lyngbya majuscula 3L]
 gi|332352961|gb|EGJ32520.1| DNA mismatch repair protein MutL [Lyngbya majuscula 3L]
          Length = 589

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/614 (26%), Positives = 285/614 (46%), Gaps = 55/614 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L + +++ IAAGE+I+  +  ++ELIENSLDA ++R+   +    +   ++ DNG
Sbjct: 1   MIIQTLPKNVVHLIAAGEVIDSIAAVVRELIENSLDAGATRITVSLWT-EQWRVRVADNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GM  + +  A   H TSKI  SDD   I + GFRGEAL S+ AV+ L ++SR P N+ G
Sbjct: 60  TGMEVKNLQKAAFAHSTSKICSSDDLWKITSLGFRGEALHSLAAVAELEILSRCPGNSQG 119

Query: 119 AQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            + I  S  ++  +   A+ PGTIV V +LF  +P R   L     +   +  +I + A+
Sbjct: 120 WRVIYNSQGQLRQIESAAIAPGTIVIVSNLFGKLPVRRQGLPPMAQQLRAVQTIIHQHAL 179

Query: 178 AYPKVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSN------- 229
            +P+VS+         + +    +     P+ I Q+   D     VE+    +       
Sbjct: 180 CHPRVSWQVEQNGRPWFNLCPGHTAQQILPQIIKQLKESDLQPLTVEVPIPDSATEQQQD 239

Query: 230 --------EITLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
                      ++   G+P   +R   +   V  NGR V+   +  T+ T  A T+P  R
Sbjct: 240 KSTKGNLGNGLMELVLGLPDRCHRRRPDWVKVATNGRIVRSHELEQTMITGLARTLPRDR 299

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           YP+  L L I P Q+D N HPAK+ I   + +  +  + ++I+ A+      T + L + 
Sbjct: 300 YPICFLHLRICPSQIDWNRHPAKTEIYLHSVSYWQEQVAEAIEHALR----ITPANLPES 355

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
           + S+  +     +      T+  + +     QE          +D      D+    +++
Sbjct: 356 IHSNRVKQLLKTSEARGGYTTSRSIELIPDTQE---------ITDKTDRKIDSKIDNKTD 406

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                   A AQ+H  YI+++   G+ +++QH AHER+++E++   +    +    +L  
Sbjct: 407 DIGLIQLRAMAQLHNMYIVAEHPTGIWLIEQHIAHERVLYEELCDRWQLVPLEPPIILQH 466

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
                            E L R+G++ + FG    A+R  P +L +++      D    +
Sbjct: 467 LSPS-----------QVEQLQRIGLEVDPFGEELWAVRNAPELLRQRD------DCAKAL 509

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
           ++ S    LQ      +AT AC  +IR+G  +   EM +LL + +K  +   C HGRP +
Sbjct: 510 LELSLGGDLQTAQ---VAT-ACRSAIRNGIPLSLSEMQQLLDQWKKTRHPRTCPHGRPIY 565

Query: 581 IKLKLSDIEKLFGR 594
           + LK S + + F R
Sbjct: 566 LSLKESALSRFFRR 579


>gi|237809130|ref|YP_002893570.1| DNA mismatch repair protein MutL [Tolumonas auensis DSM 9187]
 gi|259511152|sp|C4L9N1|MUTL_TOLAT RecName: Full=DNA mismatch repair protein mutL
 gi|237501391|gb|ACQ93984.1| DNA mismatch repair protein MutL [Tolumonas auensis DSM 9187]
          Length = 594

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/546 (28%), Positives = 254/546 (46%), Gaps = 12/546 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L   + NQIAAGE++ERP+  IKEL+ENSLDA ++R++  +  GG    ++ DNG
Sbjct: 1   MPIQILPPILANQIAAGEVVERPASVIKELVENSLDAGANRIDVELEKGGCQLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSK++  DD  +I + GFRGEAL SI +VS LTL SR    +  
Sbjct: 61  GGICGTELALALARHATSKVATLDDLEHIASLGFRGEALASISSVSRLTLTSRTAGQHEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +V+P A   GT VEV DLFF  PAR  FL+SE+ E   I +++RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTVEVLDLFFNTPARRRFLRSEKTEFAHIDELLRRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +R+ Q  G +F+  A+ ++ +   + L G+ 
Sbjct: 181 SRFDVAINLKHNGKLLRQYRPAQTESQQEQRVVQACGAEFMQAALRIDSEHLGLHLYGWL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                   N    Y ++NGR ++DK +   IR AY+E       P  +L LE+DP QVDV
Sbjct: 241 APQPLTAIN-EVQYCYVNGRMIRDKLLNHAIRQAYSECTGTSFQPAYILYLELDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP+K  +RF     + +FI+Q I++A+       +       I     D  P + L  
Sbjct: 300 NVHPSKHEVRFHESRQVHDFIVQVIRQALQTAYSENAPDAVFSGIEDAAPDY-PVSPLKN 358

Query: 358 YATSLTNTQEK----LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            AT                 ++L +   L + +      +       A           I
Sbjct: 359 RATGQHQYSAPTGGYSSPSGSQLRSYGQLLTSELPSIPVSREAGSVAAPDNSDWPVLRLI 418

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            Q Y++S   D L + D  A        +    FN   I    L+   +          +
Sbjct: 419 QQRYLLSAQDDTLYLSDLVAIQSLQWLTQCNASFNEGLIAQPLLIPQRLDIARP--HEWL 476

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            E+   L +LG++        I I+ +PA+L + ++   +  ++  +       + Q+  
Sbjct: 477 AEYGIWLQKLGLRYNTHKNKQIIIQAVPALLRQTDMASTIPAMLSLLERYPVALSHQEW- 535

Query: 534 ENILAT 539
            + +AT
Sbjct: 536 HSFIAT 541


>gi|257059802|ref|YP_003137690.1| DNA mismatch repair protein [Cyanothece sp. PCC 8802]
 gi|256589968|gb|ACV00855.1| DNA mismatch repair protein MutL [Cyanothece sp. PCC 8802]
          Length = 561

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/603 (26%), Positives = 269/603 (44%), Gaps = 65/603 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L   +IN IAAGE+I+  +  ++EL+EN+LDA ++R+   +        Q+ DNG 
Sbjct: 4   PIQPLPLNVINLIAAGEVIDSIAAVVRELVENALDAGATRLVISLF-PESWRVQVADNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT  ++      H TSKI   DD   I T GFRGEAL S+  V+ L + SR   +  G 
Sbjct: 63  GMTLADLRHCALPHSTSKIHQLDDLWKITTLGFRGEALHSLAQVADLEIASRCTSDGVGW 122

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                S  +     P A+ PGTIV V +LF  +P R   L +   +   +   I  MA+ 
Sbjct: 123 CLRYQSSGEPLREEPTAIAPGTIVTVGNLFGKMPVRRQGLPAISTQLKAVQSFIENMALC 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERI---SQVIGEDFINNAVELNEKSNEIT--- 232
           +P+V++     +     ++   T      ++          F++  V+  ++S +     
Sbjct: 183 HPQVTWQVWHNQRLWLNISPGKTPQQILPQLLKGVHYHDLQFVSQGVKSPQESTQKDLDL 242

Query: 233 LQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           ++   G+P   +R   +   V INGR V+   +   I TA++ T+P  R+PV  + L + 
Sbjct: 243 IEVTLGLPDRCHRHRPDWVKVGINGRIVRSPPVEQAILTAFSRTLPKDRFPVCFIHLTLC 302

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P Q+D N HPAK  I   +    R  +                S L ++ +    Q  A 
Sbjct: 303 PSQIDWNRHPAKVEIYLHSLDFWREQV----------------SKLIEQGLRLSPQTLAS 346

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
                +    L  ++EK   + +                   D   ++ A       A A
Sbjct: 347 AAQNQRVGKLLKASEEKASYRVDA-----------------KDHQTDANAVGLMPLKAVA 389

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q+   YI+++ + GL +++QH AHER+++E ++ ++    + +  +LT            
Sbjct: 390 QVRNTYIVAEHSTGLWLIEQHIAHERVLYETLQDNWQLIPLETPIILTK----------- 438

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
           L     E L R+G++ E FG    A+R +P +LS +       D  + +++ S    LQ 
Sbjct: 439 LSDNQVEQLARIGLEIEVFGEQLWAVRTVPKLLSTRE------DCPEALVELSIGGDLQT 492

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
               +    AC  +IR+G  M   +M  LL + +   N + C HGRP ++ L+ S + + 
Sbjct: 493 AQVAV----ACRSAIRNGTPMTLSQMQELLDQWKTTRNPATCPHGRPIYLSLEESSLSRF 548

Query: 592 FGR 594
           F R
Sbjct: 549 FRR 551


>gi|119512095|ref|ZP_01631188.1| DNA mismatch repair protein [Nodularia spumigena CCY9414]
 gi|119463253|gb|EAW44197.1| DNA mismatch repair protein [Nodularia spumigena CCY9414]
          Length = 552

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/598 (26%), Positives = 267/598 (44%), Gaps = 64/598 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L  +++  I AGE+I+  +  ++EL+ENSLDA ++R+   +    +   ++ DNG 
Sbjct: 4   TIQALPTEVVYLITAGEVIDSLASVVRELVENSLDAGATRIVVSLW-PQQWRIRVADNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++  A   H TSKI   +D   I++ GFRGEAL S+  ++ L ++SRP   N G 
Sbjct: 63  GMDEYDLQQAALAHSTSKIRSSEDLWKINSLGFRGEALHSLTTLADLEILSRPRAANVGW 122

Query: 120 QIAI-SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++    G +   +   A+ PGT+V V  LF     R   L +   +   +   I+++A+ 
Sbjct: 123 RVVYGEGGQAVELEATAIAPGTVVTVSHLFGNCAVRRQGLPTSAQQMRGVQLAIQQIALC 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +P V++         + ++  ++     P+ + QV   D     +EL    +++ L    
Sbjct: 183 HPHVTWQVWQNDRQWFSISPAASTAQLLPQILPQVRQGDLNEIKLELPIPHSQLNL--VV 240

Query: 238 GIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
           G+P   +R   +   V INGR V+   +  T  +A+  T+P  RYP+ +L L I P Q++
Sbjct: 241 GLPDRCHRRRPDWVRVAINGRMVKLPELEQTTLSAFHRTLPRDRYPICLLNLTISPDQIN 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            N +PAKS I        +  I  +I KA+                              
Sbjct: 301 WNRNPAKSEIYLNEIGYWQEQITTAIDKALR----------------------------- 331

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                +++   K  +Q  R+S           Y  + +   E   T      A AQ+   
Sbjct: 332 -----ISSANFKESVQTTRVSKILKAAEAKGGYHVNPENTPEHNNT-LHSLKAIAQLSNT 385

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YI+ +  +G+ +V+QH AHER+++E++  ++    I    +L             L    
Sbjct: 386 YIVVEHPNGMWLVEQHIAHERVLYEQICDNWQLVPIEPAIIL-----------YQLSAAQ 434

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L R+G+  E FG    AIR IPA L ++       D  D I++ S    LQ     +
Sbjct: 435 VLQLQRIGLDIEPFGEQLWAIRTIPAPLQQRE------DRADAILELSWGGDLQVAQVAV 488

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               AC  +IR+G  M   EM  LL + ++  N   C HGRP ++ L+   + + F R
Sbjct: 489 ----ACRSAIRNGTPMTIPEMQTLLNQWQRTRNPRTCPHGRPIYLSLEEPALARFFRR 542


>gi|94987070|ref|YP_595003.1| DNA mismatch repair ATPase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731319|emb|CAJ54682.1| DNA mismatch repair enzyme (predicted ATPase) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 648

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 194/656 (29%), Positives = 304/656 (46%), Gaps = 79/656 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E + NQIAAGE++ERP+  IKEL+ENSLDA+++ +E ++  GG +F Q+ DNGF
Sbjct: 7   PIILLPEALQNQIAAGEVVERPASIIKELVENSLDAKATDIEVIMENGGHTFIQVRDNGF 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMS---RPPQNN 116
           G+   E+ +A+ RH T+KI D  D   IH+FGFRGEALPSI +VS   + S   +   N 
Sbjct: 67  GIPPAELRLALTRHATNKIKDLGDIWKIHSFGFRGEALPSIASVSSFKIESAYTKESNNT 126

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             A + I   KI    P ++  GTI+ V+DLF T+PARL FLKS   E     ++  R+A
Sbjct: 127 EAAFLQIKHGKIEKEGPSSLYKGTIITVQDLFATVPARLKFLKSPVTEQKRAQEIFSRLA 186

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +       T  T+ S   ++       +  +R+  +  E+  +N + +++ +++I + G 
Sbjct: 187 LTTN----TTMTLFSGARELLKFPAAHSLHQRLKIIWPEELTSNLIPVDKTTHDIRIHGL 242

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
           T  PT  +  +++  +++NGRT+ DK IL  I  AY   +    YP  VL +EI P  +D
Sbjct: 243 TSPPTQTQLRSDRVLLYVNGRTLNDKLILRAIFEAYKGRLISKEYPQAVLFIEISPELID 302

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTH 354
           VNVHPAK+ +RFR+   I + I  ++++AINK   S S   +   I    F  +   +  
Sbjct: 303 VNVHPAKTEVRFRDEKSIFSAISTALKEAINKTIPSFSLQQTDTDIHPKGFWGEADQEYI 362

Query: 355 LPKYATSLTNT----------------------------------QEKLFLQENR----- 375
            P    S  +                                   Q+ L  +E+      
Sbjct: 363 FPIKKNSNIHPTQTEVCTTQSTTTDSHGFSLQHMLQNTFVLEPDCQQSLSAKESTYTLAS 422

Query: 376 -----LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH------QNYIISQT-- 422
                 S N  L  +  + S D++   E    +    +     H        Y+I +   
Sbjct: 423 SYSSHPSDNSSLLPNLTSNSTDSNKENEISIKYIDKKMCIGPYHYLGQIGDTYLILEDIR 482

Query: 423 ----TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
                  L+I+DQHA HER++ EK R         SQ L+ P  + L   E   + E   
Sbjct: 483 KKNEQAELIILDQHAVHERILAEKFRNGSLIN--QSQQLVLPIQLKLHYSEQEELQEIAN 540

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  LG      G   + +  IP +L +     +LR  +    ++         IE +  
Sbjct: 541 SLTSLGFIFSLKGD-ILHVESIPPLLDRSQATIILRKALSRQQEN---------IEKLWI 590

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +MAC  +I++G  +   E   L+ +         C HGRP  +   + D++KLF R
Sbjct: 591 SMACKAAIKAGLPLPPDEAALLITQWISIEKRENCPHGRPCVLVWTIQDLDKLFKR 646


>gi|15639295|ref|NP_218744.1| DNA mismatch repair protein (mutL) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025537|ref|YP_001933309.1| DNA mismatch repair protein MutL [Treponema pallidum subsp.
           pallidum SS14]
 gi|3322578|gb|AAC65291.1| DNA mismatch repair protein (mutL) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018112|gb|ACD70730.1| DNA mismatch repair protein MutL [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059702|gb|ADD72437.1| DNA mismatch repair protein MutL [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 648

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/626 (24%), Positives = 263/626 (42%), Gaps = 47/626 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +LS     +IAAGE+IERP+  ++EL+EN+LDA ++++   I  GG +  +++DNG 
Sbjct: 36  PIHRLSPDTAKKIAAGEVIERPASVVRELLENALDAGATKIHLEINAGGCALIRVSDNGH 95

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++ +  + H TSKIS  DD   + T GFRGEAL SI AVS L L S         
Sbjct: 96  GMSPQDLLLCAEAHTTSKISSADDLLQLRTLGFRGEALASIAAVSRLHLTS-TRSGPLAW 154

Query: 120 QI-------------AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
                             G +   + P ++  GT+V V  LF   PAR  FL  +  ET 
Sbjct: 155 HYQPKAAGTAAHVPPVPQGTEAGVLEPASLERGTVVRVEQLFENFPARKRFLGRQSAETT 214

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
           L    +  +++A+  V F F+   +++  +  Q T  +       + G+  + + +E  +
Sbjct: 215 LCRSALIDVSLAHHPVEFRFTVDGTHKLTLLSQQTRKDRCLETQMLKGDPALFHTIEGGD 274

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
            S    L      P   R      + F+NGR + D  ++  +        P G +PV  L
Sbjct: 275 CSFHFHL--VLSEPAICRRERRGIFTFVNGRRIFDYGLVQALVLGSEGYFPNGTFPVACL 332

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----------GISTSSV 336
            L ++  ++D N+HPAK  +  ++   IR+ + +S+     +             + ++ 
Sbjct: 333 FLTVNSERIDFNIHPAKKEVHLQDYAHIRHTLSRSVAHFYRQCTIAHYVRAEPAHAPATQ 392

Query: 337 LSKKMISSFH------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
            +    SS        +  AP  H P+Y +      +   L            + D T+ 
Sbjct: 393 GNAPTHSSPPCTGVREEPAAPCAHTPRYESLFPLPVQHAHLLPPSPPHISCEHARDCTHP 452

Query: 391 EDNDPVEESEATHYQLG--IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                 +     H   G      Q+   +I  +  + L ++DQHAAHER+IF+ ++++  
Sbjct: 453 APAAEGDAPVHNHTHTGAFKVLGQVAGTFIAVERNNALYLIDQHAAHERIIFDTLQRNLG 512

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           + +I           D              +L   G +       +  +  +P       
Sbjct: 513 TAQILLIPYHIHPRSDEEARIMHRACT---ELSPAGFRFHEEPDGSWHVTAVPLHWRGSE 569

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             QL  DI+       +     D + ++LAT AC  + + G  +    ++ L+ +    P
Sbjct: 570 -EQLAHDILY------SGKNAHDILRHVLATCACRSACKDGTILDDATLHSLVEQAFALP 622

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S  C HGRP +I +   ++ K   R
Sbjct: 623 QSR-CPHGRPIWIVIGRDELFKRIKR 647


>gi|152978663|ref|YP_001344292.1| DNA mismatch repair protein [Actinobacillus succinogenes 130Z]
 gi|171704301|sp|A6VN10|MUTL_ACTSZ RecName: Full=DNA mismatch repair protein mutL
 gi|150840386|gb|ABR74357.1| DNA mismatch repair protein MutL [Actinobacillus succinogenes 130Z]
          Length = 637

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/580 (28%), Positives = 271/580 (46%), Gaps = 66/580 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG +  +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIENGGATLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           FG+  EE+ +A+ RH TSKI+  DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 61  FGIPKEELSLALARHATSKIATIDDLEAILSFGFRGEALASISSVSRLTLTSRTADQQEA 120

Query: 119 AQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      E+ S+V P +   GT VEV +LFF +PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVFVQGREQESTVNPASHPVGTTVEVANLFFNMPARRKFLRTDKTEFGHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++FT +       +      +    +R++ + G DF+  A+ ++ K + + L G+ 
Sbjct: 181 AKSHIAFTLTHNGKIVRQYKSAVEDTQKLKRLAAICGNDFVRQALYIDWKHDNLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             PTF R   +  Y ++NGR V+DK I   IR AYAE +   RYP  VL L+++P  VDV
Sbjct: 241 TTPTFARQQNDLSYCYVNGRMVKDKVINHAIRQAYAEHLGSERYPAFVLFLDLNPNDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTS-------------------- 334
           NVHP K  +RF+   +I +FI Q +  A+    +   S S                    
Sbjct: 301 NVHPTKHEVRFQQSRLIHDFIFQGVTNALLSAEQFDFSASTESEKNNEIREPQADYQNVT 360

Query: 335 ----------------------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
                                        + +K   +  H   A  +  P         Q
Sbjct: 361 PTIRPNRAAAGQNMFELNSPTQTKQTNVPITTKAYPTPAHSGQAGYSTTPSNPPPHFMPQ 420

Query: 367 E----KLFLQENRLSTNDLLPSD---DPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                  F +E    T   + ++    P        ++ S  +   L  A A ++   ++
Sbjct: 421 SARSVSPFEREKVTKTEQRIYAELLKTPEVEAPPTSIQSSLLSSSSLLHAVALVNNQALL 480

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            Q      ++  +   +++  E +    N+     Q LL P +  L + + A   +    
Sbjct: 481 LQRDTAFYLLPLNKL-QKMRLELLLTLPNT---PQQMLLIPVVFRLSDKQQAQWRQQKIW 536

Query: 480 LHRLGIK-AERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
             + G +  E    + I +  +P  L  +N+ +++  +++
Sbjct: 537 FEQSGFEFIENPVQHRITLNAVPQCLRHQNLQKIVIALLN 576


>gi|188026361|ref|ZP_02961804.2| hypothetical protein PROSTU_03873 [Providencia stuartii ATCC 25827]
 gi|188020101|gb|EDU58141.1| hypothetical protein PROSTU_03873 [Providencia stuartii ATCC 25827]
          Length = 653

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/638 (25%), Positives = 288/638 (45%), Gaps = 77/638 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG+   +I DNG
Sbjct: 3   MAIQILSPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGEKLIRIRDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL S+P + +  
Sbjct: 63  SGISKDELVLALARHATSKIATLDDLEAIMSMGFRGEALASISSVSRLTLTSKPAEQSEA 122

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT VEV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 123 WQAYAEGRDMAVTVKPAAHPNGTTVEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+   +       +            R++ + G  F+  A+ ++ +  ++ ++G+ 
Sbjct: 183 SRPDVTINLNHNGKLVKQYRAAKGEAQQERRLANICGTGFMQGALAMSWEHGDLGIKGWV 242

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   ++  Y ++NGR ++D+ I   IR AY   +   + P  VL L IDP+QVDV
Sbjct: 243 VSP-SSTPVSDIQYCYVNGRMMRDRLINHAIRQAYEGHLDDNQQPAYVLYLTIDPQQVDV 301

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI-------------------------NKKGIS 332
           NVHPAK  +RF    ++ +FI Q ++ A+                              S
Sbjct: 302 NVHPAKHEVRFHQARLVHDFIYQGVRTALLNAHEPDELPGIEPVTHELTNRSSAGDNYFS 361

Query: 333 TSSVLSKK--------MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
           +SS L++                  + ++H      + + T    F +E    T      
Sbjct: 362 SSSTLNENDENETSRTAQQQHDSTGSSRSHSAPSVAATSPTSTNHFSREKSAFTPSNTHY 421

Query: 385 DDPTYSEDNDPVE----------------------------ESEATHYQLGIACAQIHQN 416
           D          +                             E    ++  G       +N
Sbjct: 422 DRKAGQLYQALMSVPVAEEDKKPLFPSRQPLDVPAVSSQSVEENTNNFTFGKVLTIYAKN 481

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           + + +++ GL+++    A+  L   ++    +   +  Q LL P  + L   E A+   +
Sbjct: 482 FALIESSLGLILLSLSEANYLLKLAQL--SPDGEALKPQPLLIPLKLSLNSDEIAVFQRN 539

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            E L   GI+        + I  +   L  +N+ QL   +++  + +    + QD  + +
Sbjct: 540 KEQLTLFGIE-ATISHGKVTIHAVSLPLRTQNLSQLFSGLLN-FLSTKEQASRQDIAQWL 597

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
             T++     ++       +  +LL ++E+      C 
Sbjct: 598 AKTVSQE---KTQESWSLAQAVQLLADVERL-----CP 627


>gi|218246760|ref|YP_002372131.1| DNA mismatch repair protein [Cyanothece sp. PCC 8801]
 gi|226723031|sp|B7JY11|MUTL_CYAP8 RecName: Full=DNA mismatch repair protein mutL
 gi|218167238|gb|ACK65975.1| DNA mismatch repair protein MutL [Cyanothece sp. PCC 8801]
          Length = 561

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/603 (26%), Positives = 268/603 (44%), Gaps = 65/603 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L   +IN IAAGE+I+  +  ++EL+EN+LDA ++R+   +        Q+ DNG 
Sbjct: 4   PIQPLPLNVINLIAAGEVIDSIAAVVRELVENALDAGATRLVISLF-PESWRVQVADNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT  ++      H TSKI   DD   I T GFRGEAL S+  V+ L + SR   +  G 
Sbjct: 63  GMTLADLRHCALPHSTSKIHQLDDLWKITTLGFRGEALHSLAQVADLEIASRCTSDGVGW 122

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                S  +     P A+ PGTIV V +LF  +P R   L +   +   +   I  MA+ 
Sbjct: 123 CLRYQSSGEPLREEPTAIAPGTIVTVGNLFGKMPVRRQGLPAISTQLKAVQSFIENMALC 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERI---SQVIGEDFINNAVELNEKSNEIT--- 232
           +P+V++     +     ++   T      ++          F++  V+  ++S +     
Sbjct: 183 HPQVTWQVWHNQRLWLNISPGKTPQQILPQLLKGVHYHDLQFVSQGVKSPQESTQKDLDL 242

Query: 233 LQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           ++   G+P   +R   +   V INGR V+   +   I  A++ T+P  R+PV  + L + 
Sbjct: 243 IEVTLGLPDRCHRHRPDWVKVGINGRIVRSPPVEQAILVAFSRTLPKDRFPVCFIHLTLC 302

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P Q+D N HPAK  I   +    +  +                S L ++ +    Q  A 
Sbjct: 303 PSQIDWNRHPAKVEIYLHSLDFWQEQV----------------SKLIEQGLRLSPQTLAS 346

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
                +    L  ++EK   + +                   D   ++ A       A A
Sbjct: 347 AAQNQRVGKLLKASEEKASYRVDA-----------------KDHQTDANAVGLMPLKAVA 389

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q+   YI+++ + GL +++QH AHER+++E ++ ++    + +  +LT            
Sbjct: 390 QVRNTYIMAEHSTGLWLIEQHIAHERVLYETLQDNWQLIPLETPIILTK----------- 438

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
           L     E L R+G++ E FG    A+R +P +LS +       D  + +++ S    LQ 
Sbjct: 439 LSDNQVEQLARIGLEIEVFGEQLWAVRTVPKLLSTRE------DCPEALVELSIGGDLQT 492

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
               +    AC  +IR+G  M   +M  LL + +   N + C HGRP ++ L+ S + + 
Sbjct: 493 AQVAV----ACRSAIRNGTPMTLSQMQELLDQWKTTRNPATCPHGRPIYLSLEESSLSRF 548

Query: 592 FGR 594
           F R
Sbjct: 549 FRR 551


>gi|312880064|ref|ZP_07739864.1| DNA mismatch repair protein MutL [Aminomonas paucivorans DSM 12260]
 gi|310783355|gb|EFQ23753.1| DNA mismatch repair protein MutL [Aminomonas paucivorans DSM 12260]
          Length = 587

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/605 (26%), Positives = 256/605 (42%), Gaps = 32/605 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +  +IAAGE+IERP    KEL+EN+LDA +SR+   +  GGK+   + D+G
Sbjct: 1   MTIRRLSEDVFQRIAAGEVIERPVSVCKELLENALDAGASRISVTLLQGGKTSLIVEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+A++RH TSKI   +D   I T GFRGEAL SI  VS L + SR    + G
Sbjct: 61  CGIPFDELPLALERHATSKIFSLEDLDRIGTLGFRGEALASIATVSLLEIRSRATGEDRG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             I   G  +   +P+    GT ++V +LFF +PAR  FL++   ET  +  +I+ M + 
Sbjct: 121 GMIRSEGGSVVLHQPLPCPEGTRIQVEELFFNLPARRKFLRAPGAETRRVGQLIQEMGLI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+V  T  +     +         +    +    G     +   L+  S  +  + +  
Sbjct: 181 HPEVRLTLRSEGRVLFDTEPGR---DTERALRDHWGCGAARS---LSVSSGGVEAELWWS 234

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   +       +F NGR +QD  +   +          G   +VVL   + P  +DVN
Sbjct: 235 GP---KEGRTPLVLFANGRRIQDSSVRGALLAGAGT---CGGDWLVVL--RLPPEDLDVN 286

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQK------AINKKGISTSSVLSKKMISSFHQDNAPK 352
           VHPAK+ +RFR P  + + + + + K        +   +     LS    S         
Sbjct: 287 VHPAKTEVRFRRPGEVFDLVRRGVAKLVEGGTFGDHWVLPGVPDLSSPPSSGEPYRERTF 346

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
              P       +      + E R      L S  P              +     +   Q
Sbjct: 347 PSSPAPNPPSWDRAFPQRVAEARTFGAPRLGSLFPPLERGEGAPSSRAPSLEPEAVYLGQ 406

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
             + Y++     GL ++D HAA ER+++E++R  +    + S  +       L       
Sbjct: 407 AQRGYLLFDGPSGLWVLDPHAAQERILYERLRSSWGRGTVQSLAVPVDLPGSLAP----T 462

Query: 473 IMEHDEDLHRLGIKAERFGPNA---IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           +     DL  LG + +           +  IP +L+   +     D +   +        
Sbjct: 463 VESCRPDLEGLGFRFQAPSQETPEGWKVTGIPHLLALYPLAP--LDWLRLALAEEGVADP 520

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
              ++ + A  AC  S++ G ++Q  E   LLR++        C HGRPT   L   +I 
Sbjct: 521 ATLVKRM-ADRACKASLKLGERLQEEEARTLLRDLRACETPYACPHGRPTLFTLSWEEIA 579

Query: 590 KLFGR 594
              GR
Sbjct: 580 SRLGR 584


>gi|172035215|ref|YP_001801716.1| DNA mismatch repair protein [Cyanothece sp. ATCC 51142]
 gi|226707595|sp|B1X109|MUTL_CYAA5 RecName: Full=DNA mismatch repair protein mutL
 gi|171696669|gb|ACB49650.1| DNA mismatch repair protein [Cyanothece sp. ATCC 51142]
          Length = 554

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/600 (26%), Positives = 263/600 (43%), Gaps = 66/600 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS +I+N IAAGE+I+  +  ++EL+EN++DAE++R+   I         + DNG 
Sbjct: 4   PIQLLSPEIVNLIAAGEVIDSLAAVVRELVENAIDAEATRLTISIV-PELWQVTVADNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           GM+ E +    + H TSKI   DD   I + GFRGEAL SI  V  LT+ SR       G
Sbjct: 63  GMSLENLRHCAKAHHTSKICDLDDLWKITSLGFRGEALFSITQVGQLTIKSRDATGYQVG 122

Query: 119 AQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                    +I   +   M  GTIV   +LF TIP R   L + + +   I  +I  M++
Sbjct: 123 WCVDYNQQGEIIKEQTSPMASGTIVTASNLFGTIPVRRQGLPTIKQQLKAIQGMIDNMSL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVE-LNEKSNEITLQG 235
            +P++++       +   ++   T     P+ +  V   D        +     +  L+ 
Sbjct: 183 CHPQITWQVYHNHQSWLTISPGKTPQQILPQLLKSVHFHDLQFLCETIITPSQEQAKLEM 242

Query: 236 YTGIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
             G+P        +   + +NGR V+   +  TI    + T+P GR+PV  L  +I P +
Sbjct: 243 VLGLPDRTSRGRLDWLKIAVNGRVVRSPRLEQTILAGLSRTLPKGRFPVSFLHFKIPPSE 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +D N HPAK+ I  ++    +  + + I+KA+    ++ ++V                  
Sbjct: 303 IDWNRHPAKTEIYLQSLEFWQEKVTEIIEKALKLSPLTITTV------------------ 344

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                            Q  R+        +   Y+     V E          A  Q++
Sbjct: 345 ----------------GQNQRVKKLLKASENKGVYNVGTSHVNE---LDLIKLRAVGQVN 385

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + YI+++ + GL +V+QH AHER+++E+++  +    +    +LT               
Sbjct: 386 KTYIVAEHSQGLWLVEQHIAHERVLYEQLQDQWQLIPVEQAIILTQLSTK---------- 435

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              E L R+GI  E FG N  A+R +P +L  +       D  D +I+ S    L+    
Sbjct: 436 -QVEQLERIGIDIEPFGENTWAVRNVPKLLENRE------DCPDALIELSLGGDLETAQV 488

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +    AC  +IR+G  +   +M  LL   +K  N   C HGRP ++ L+ S + + F R
Sbjct: 489 AV----ACRSAIRNGVLLDLAQMQDLLDSWKKTRNPRTCPHGRPIYLSLEESSLSRFFRR 544


>gi|320535178|ref|ZP_08035306.1| DNA mismatch repair protein [Treponema phagedenis F0421]
 gi|320147973|gb|EFW39461.1| DNA mismatch repair protein [Treponema phagedenis F0421]
          Length = 613

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/624 (24%), Positives = 275/624 (44%), Gaps = 51/624 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+KLS++   +IAAGEIIERP+  I+EL++N++D+ +++++  I  GG  F ++ DNG 
Sbjct: 9   PIKKLSQESAQKIAAGEIIERPASVIRELLDNAIDSGATKIQVEIKNGGIDFIRVVDNGC 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E++ +  Q H TSKI   +D   + T GFRGEAL SI AVS L + S   +  +  
Sbjct: 69  GMTKEDVELCTQTHATSKIETVEDLLKLSTLGFRGEALSSIDAVSRLEITS-TREGPSAW 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      ++    P  +  GT V++ +LF   PAR  FLK    E NL   +    A+ +
Sbjct: 128 R-----YQLKKTIPARLAEGTSVQIENLFENFPARKQFLKRASAEANLCRQIFIDKALPH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            +  FTF+   S + ++            ++ +  ++      ++       +     G 
Sbjct: 183 FETEFTFTVDDSLKLRLPACKNLKQ--RYLNALQPKEPEKLFHQIEIAEERFSFAAVLGS 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +     +F NGR + +  +   I        P G +P+ +L L++ P +VD N+
Sbjct: 241 PDVVRSDKRNIMIFANGRRITEYGLTQAILYGSEGYFPNGAFPIGILFLQVTPDRVDFNI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK   RF++   I + +  ++     +K +  + +   K   SF Q+     +  K  
Sbjct: 301 HPAKKEARFQDYGEIHHAVSSAVANFYRQKTV-ANLLKDTKYDPSFSQELNFTENHTKNQ 359

Query: 360 TSLTNTQEK-----------------LFLQENRLSTNDLLP------------SDDPTYS 390
            +   +Q                       E  + + D +             SD  + +
Sbjct: 360 INHAWSQSNREYTDRIGGKFGIAARDFTYSEKPMPSFDTVQDYRENYTSGKVSSDFFSRN 419

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
              +                 Q+   +I  +  D L ++DQHAAHER++F +++    S 
Sbjct: 420 ILPENSAAPPQLPQSDFKFLGQVAGTFIAVEKNDALYLIDQHAAHERILFNELK---QSL 476

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            I+ + L+  +I+   + +   I +  E L + G K    G     +  +P  +      
Sbjct: 477 GISQELLIPYKIVTESDKDDQTIRKAQEALTQAGFKLIDEGDGIWQVTAVP--IRWVGTE 534

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           Q L +   +I ++  T   +D +++ILAT AC  + + G  +  +   +L+ +    P  
Sbjct: 535 QQLTE---DITEAGKTS--EDILDHILATSACRAACKDGAILDPVTARKLVEKTFALPEP 589

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C HGRP +I +   ++ K   R
Sbjct: 590 L-CPHGRPLWIVIDREELFKRIKR 612


>gi|261209766|ref|ZP_05924072.1| DNA mismatch repair protein MutL [Vibrio sp. RC341]
 gi|260841182|gb|EEX67692.1| DNA mismatch repair protein MutL [Vibrio sp. RC341]
          Length = 653

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/653 (25%), Positives = 280/653 (42%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKEELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVTQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P +   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPASHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKLVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------- 349
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++    S   +         
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSTQVIAPAVNEGAFHSSPVEEVADEVKPI 360

Query: 350 --------------------------------------------APKTHLPKYATSLTNT 365
                                                        P    PK A++    
Sbjct: 361 SVETPVPESVWQAVQSSPDYPRKVVRDNPEGEGDNYQLRERAVANPWVPSPKAASTGKER 420

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPV---------EESEATHYQLGIACAQIHQN 416
                + +   +    L        E              E++  T  +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLPDEVPHAASTNLSVIRKEQAGITIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E      H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQFKL--RGLLNAQQGALKAQPLLVPLGLKLSELEWQAAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              + +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSAMLQLGIELKTRANHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|251792374|ref|YP_003007100.1| DNA mismatch repair protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533767|gb|ACS97013.1| DNA mismatch repair protein MutL [Aggregatibacter aphrophilus
           NJ8700]
          Length = 615

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/570 (30%), Positives = 284/570 (49%), Gaps = 37/570 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++ NQIAAGE++ERP+  +KEL+ENSLDA + +++  I  GG    +I DNG
Sbjct: 1   MTIRVLSPQLANQIAAGEVVERPASVVKELVENSLDAGADKIQIDIENGGAGLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+D  D   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  IGIAKEELALALARHATSKIADLADLEAILSLGFRGEALTSISSVSRLTLTSRTAEQHEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL+SE+ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIQPASHPIGTTVEVANLFFNTPARRKFLRSEKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   +SFT +       +     TN    +R++ +  +DFI NA++++ K +++ L G+ 
Sbjct: 181 AKFNISFTLTHNGKVLRQYKSAVTNEQKLKRVAAICSDDFIQNALQIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P FNR   +  Y ++NGR V+DK I   IR AYAE +   +YP  VL ++++P  VDV
Sbjct: 241 ALPHFNRPQNDLNYCYVNGRMVRDKIITHAIRQAYAEYLSNDQYPAFVLFIDLNPNDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS--------SFHQDN 349
           NVHP K  +RF    ++ +FI Q I  A+  + +  S+  +++ I         S   + 
Sbjct: 301 NVHPTKHEVRFHQSRLVHDFITQGISHALTSESLDFSATETERKIQEPMGLWEVSSKPNR 360

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
           +          S  +T  ++  Q +  + +            + D +  S    ++    
Sbjct: 361 SAAGPNMFTQPSTYSTGYRVEKQPSEGAYHSSQKHRQNLPHFNRDNITPSVLDAHKYLWM 420

Query: 410 CAQIHQNYIISQTTDG---------LVIVDQHAA---HERLIFEKMRQDFNSTKIT---- 453
            +       I+ + D          L +V  HA     E+  +          K+     
Sbjct: 421 DSTAPSRSKITISEDSKPRSTCLHALALVGNHALLLQQEQHFYLLSLSRLQRLKLELNLT 480

Query: 454 ----SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGPNAIAIREIPAILSKKN 508
               SQ LL P I  L E +     +      ++G           I ++++ A L ++N
Sbjct: 481 LTATSQPLLIPVIFRLSETQWQAWQQQKAWFTQVGFDFLTEDAQRKITLQKVSAYLRRQN 540

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           + QL+  +++E +++     L + +  +LA
Sbjct: 541 LQQLIIALLNEPVEN-----LSEFLTALLA 565


>gi|289671318|ref|ZP_06492393.1| DNA mismatch repair protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 490

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/494 (33%), Positives = 258/494 (52%), Gaps = 38/494 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L E ++NQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I DNG
Sbjct: 1   MAIRQLPEILVNQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+T +E+P+AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G
Sbjct: 61  GGITPDELPLAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             + I G ++  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A
Sbjct: 121 FALEIDGGRLGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V    S       +        +    + + +GEDF   A+ ++   + + L G+  
Sbjct: 181 RPNVELRVSHNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGSGLRLHGWVA 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P ++R + +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVN
Sbjct: 239 QPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----------------------------- 329
           VHPAK  +RFR   +I +F+ +++Q A+                                
Sbjct: 299 VHPAKHEVRFREARLIHDFVYRTLQDALAHTRAGATPNSIGSDGAGYTGATAGGTGNIAS 358

Query: 330 -GISTSSVLSKKMISSFHQDNAPKTHLP--KYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
            G+ +         S +   N   +  P              L+      S         
Sbjct: 359 GGLPSHGTAPCSSGSGYKYTNWTPSQTPLGLRVDEARAAYSALYAPPPPSSAQQSAGMQS 418

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
              +      E+S      LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++  
Sbjct: 419 MAGTGLPATAEDS--GVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNA 476

Query: 447 FNSTKITSQTLLTP 460
            +S  + +Q LL P
Sbjct: 477 HDSIGLHAQPLLVP 490


>gi|261345217|ref|ZP_05972861.1| DNA mismatch repair protein MutL [Providencia rustigianii DSM 4541]
 gi|282566912|gb|EFB72447.1| DNA mismatch repair protein MutL [Providencia rustigianii DSM 4541]
          Length = 651

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/640 (25%), Positives = 287/640 (44%), Gaps = 81/640 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG+   ++ DNG
Sbjct: 1   MSIQILSPQLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIERGGEKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL S+P +    
Sbjct: 61  CGINKDELVLALARHATSKIATLDDLEAIMSMGFRGEALASISSVARLTLTSKPAEQTEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT VEV DLF+  PAR  F+++E+ E   I +++RR+A+
Sbjct: 121 WQSYAEGRDMQVTVKPAAHPNGTTVEVLDLFYNTPARRKFMRTEKTEFGHIDEIVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+   +       +      +     R+  + G  F+  A+ L  + +++ ++G+ 
Sbjct: 181 SRPDVAINLTHNGKLVKQYRAAHDDIQQERRLGAICGTGFMQGALALLWEHSDLAIKGWV 240

Query: 238 GIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P+ +   A +  Y ++NGR ++DK I   IR AY   +   + P  VL L IDP+QVD
Sbjct: 241 VSPSSSHHVASDIQYCYVNGRMMRDKLINHAIRQAYEGHLDENQQPAYVLYLTIDPKQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q+++  +            + + S      +   +  
Sbjct: 301 VNVHPAKHEVRFHQARLVHDFIYQAVRTVLLNTTAVDQLPGIEPISSEIENRASAGENYF 360

Query: 357 KYATSLTNT--------QEKLFLQENRLSTNDLLPSDDPTYSED---------------- 392
               S+ +          + ++ +E++ S ++   +   + S                  
Sbjct: 361 ASPVSVGSVVKNHERHDHQPVYARESQASYSEPKTASSASKSPYVPVENNTNKYSAPDYD 420

Query: 393 -----------------------------------NDPVEESEATHYQLGIACAQIHQNY 417
                                              +       A  YQ G       +N+
Sbjct: 421 RKAGELYQSLMSIPVAPEDKKTLFPERKPLGTHSISSQSVAENADGYQFGKVLTIYAKNF 480

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            + +++ G++++  + A+  L   ++        +  Q LL P  + L   E  ++  + 
Sbjct: 481 ALIESSLGIILLSLNEANYLLKLAQL--SPAEESLKPQPLLIPLKLSLKNDEVEVLQRYK 538

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             L   GI+A  F    + I  +   L  +N+ QL  D+I  +    +     + I   L
Sbjct: 539 AQLTLFGIEATIF-HGKVTIHTVSLPLRTQNLSQLFSDLIAFLSTKESVT--NENIAQWL 595

Query: 538 ATMACYGSI---RSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           A      +I   +        +  +LL ++E+      C 
Sbjct: 596 A-----KAISQTKIEESWSLAQAVQLLADVERI-----CP 625


>gi|8039787|sp|O83325|MUTL_TREPA RecName: Full=DNA mismatch repair protein mutL
          Length = 620

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 151/626 (24%), Positives = 263/626 (42%), Gaps = 47/626 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +LS     +IAAGE+IERP+  ++EL+EN+LDA ++++   I  GG +  +++DNG 
Sbjct: 8   PIHRLSPDTAKKIAAGEVIERPASVVRELLENALDAGATKIHLEINAGGCALIRVSDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++ +  + H TSKIS  DD   + T GFRGEAL SI AVS L L S         
Sbjct: 68  GMSPQDLLLCAEAHTTSKISSADDLLQLRTLGFRGEALASIAAVSRLHLTS-TRSGPLAW 126

Query: 120 QI-------------AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
                             G +   + P ++  GT+V V  LF   PAR  FL  +  ET 
Sbjct: 127 HYQPKAAGTAAHVPPVPQGTEAGVLEPASLERGTVVRVEQLFENFPARKRFLGRQSAETT 186

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
           L    +  +++A+  V F F+   +++  +  Q T  +       + G+  + + +E  +
Sbjct: 187 LCRSALIDVSLAHHPVEFRFTVDGTHKLTLLSQQTRKDRCLETQMLKGDPALFHTIEGGD 246

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
            S    L      P   R      + F+NGR + D  ++  +        P G +PV  L
Sbjct: 247 CSFHFHL--VLSEPAICRRERRGIFTFVNGRRIFDYGLVQALVLGSEGYFPNGTFPVACL 304

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----------GISTSSV 336
            L ++  ++D N+HPAK  +  ++   IR+ + +S+     +             + ++ 
Sbjct: 305 FLTVNSERIDFNIHPAKKEVHLQDYAHIRHTLSRSVAHFYRQCTIAHYVRAEPAHAPATQ 364

Query: 337 LSKKMISSFH------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
            +    SS        +  AP  H P+Y +      +   L            + D T+ 
Sbjct: 365 GNAPTHSSPPCTGVREEPAAPCAHTPRYESLFPLPVQHAHLLPPSPPHISCEHARDCTHP 424

Query: 391 EDNDPVEESEATHYQLG--IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                 +     H   G      Q+   +I  +  + L ++DQHAAHER+IF+ ++++  
Sbjct: 425 APAAEGDAPVHNHTHTGAFKVLGQVAGTFIAVERNNALYLIDQHAAHERIIFDTLQRNLG 484

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           + +I           D              +L   G +       +  +  +P       
Sbjct: 485 TAQILLIPYHIHPRSDEEARIMHRACT---ELSPAGFRFHEEPDGSWHVTAVPLHWRGSE 541

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             QL  DI+       +     D + ++LAT AC  + + G  +    ++ L+ +    P
Sbjct: 542 -EQLAHDILY------SGKNAHDILRHVLATCACRSACKDGTILDDATLHSLVEQAFALP 594

Query: 569 NSSQCNHGRPTFIKLKLSDIEKLFGR 594
            S  C HGRP +I +   ++ K   R
Sbjct: 595 QSR-CPHGRPIWIVIGRDELFKRIKR 619


>gi|121729708|ref|ZP_01682150.1| DNA mismatch repair protein MutL [Vibrio cholerae V52]
 gi|121628559|gb|EAX61041.1| DNA mismatch repair protein MutL [Vibrio cholerae V52]
          Length = 653

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 285/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++ + ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRVDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIDTTQQERVWQAVQNTPDYPRKAPRDNDRDESDNPQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|90408487|ref|ZP_01216646.1| DNA mismatch repair protein [Psychromonas sp. CNPT3]
 gi|90310419|gb|EAS38545.1| DNA mismatch repair protein [Psychromonas sp. CNPT3]
          Length = 600

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/548 (27%), Positives = 270/548 (49%), Gaps = 14/548 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L+ ++ NQIAAGE++ERP+  +KEL+ENSLDA +SR+E  I  GG    ++ DNG
Sbjct: 1   MPIQILAPRLANQIAAGEVVERPASVVKELLENSLDAGASRIEIDIEKGGAKCIRVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKIS  DD   I + GFRGEAL S+ +VS LT  S+P      
Sbjct: 61  QGVAKDELTLALSRHATSKISHLDDLEAIMSLGFRGEALASVSSVSRLTFTSKPQDQEQA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   ++P A   GT VEV DLFF  PAR  FLK+E+ E   I ++IRR+A+
Sbjct: 121 WQAIAEGRDMQVHIKPCAHPQGTTVEVLDLFFNTPARRRFLKTEKTEFQHIDELIRRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +Y  +SFT         +    ST     +R++ +  + F+ +A+        + + G+ 
Sbjct: 181 SYFDISFTLKHNGKIIRQYRPASTPTQQLKRLASICSDSFVKSALHFESADQGLKISGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                 R   +  Y +INGR ++D+ +   I+ AYA  +P G +P  V+ ++    QVDV
Sbjct: 241 SDRLSPRTLGDVQYCYINGRIIRDRLVNHAIKQAYARILPAGFFPGFVIYIDCPAEQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP+K  +RF     + +FI+ ++   +N   +  ++    + + S+    +P T+   
Sbjct: 301 NVHPSKHEVRFHQARWVHDFIVSTLSVTLNDPEMLMATSQKGETVPSYIP--SPVTNASS 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
             +  T T       +  +    +    D          + S     +L +  A + + Y
Sbjct: 359 NESIPTPTYTPKHHYQAPIDEAQVNAYCDFIRPHVVPESQISTLPKSRLTLPLAIVSEYY 418

Query: 418 IISQ-------TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           ++ Q       ++  L ++    A + L   ++ + + + ++ +Q LL P  + L     
Sbjct: 419 LLLQASVNKTGSSSPLYLLSLPKADQLLQQTRLFEAWKNGEVIAQPLLLPVRLSLDSQLP 478

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
           +L    +  L RLG   ++     + + ++PA+L +  + ++L  ++  +       T +
Sbjct: 479 SLNAAGEILLQRLGFSVKQ-KMQKLIVSKVPALLRQGPVAKILPVLLTYLKSFEEALT-E 536

Query: 531 DRIENILA 538
             + +  A
Sbjct: 537 SEVNDFCA 544


>gi|212709951|ref|ZP_03318079.1| hypothetical protein PROVALCAL_01002 [Providencia alcalifaciens DSM
           30120]
 gi|212687360|gb|EEB46888.1| hypothetical protein PROVALCAL_01002 [Providencia alcalifaciens DSM
           30120]
          Length = 647

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/636 (26%), Positives = 288/636 (45%), Gaps = 77/636 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG+   +I DNG
Sbjct: 1   MAIQILSPQLANQIAAGEVVERPASVVKELVENSLDSGATRIDIEIERGGEKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL S+P + +  
Sbjct: 61  CGINKDELVLALARHATSKIATLDDLEAIMSMGFRGEALASISSVSRLTLTSKPAEQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT VEV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQSYAEGRDMQVTVKPAAHPNGTTVEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+   S       +            R+  + G  F+  A+ L+ + +++ ++G+ 
Sbjct: 181 SRPDVAMNLSHNGKLVKQYRAAQDANQQERRLGAICGTGFMQGALALSWEHSDLGIKGWV 240

Query: 238 GIPTFNRG-NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P+ +     +  Y ++NGR ++DK I   IR AY   +   + P  VL L IDP+QVD
Sbjct: 241 VAPSTSPSGINDIQYCYVNGRMMRDKLINHAIRQAYEGHLEDNQQPAYVLYLTIDPKQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQ----KAINKKGISTSSVLSKKMISSFHQDNAPK 352
           VNVHPAK  +RF    ++ +FI Q+++     A+ +  +     ++ ++ +     +   
Sbjct: 301 VNVHPAKHEVRFHQARLVHDFIYQAVRTVLLNALTESELPGVESVTVEVENRASAGDNYF 360

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTND-------------------------------- 380
                  T      + +  QE+++S  D                                
Sbjct: 361 ASPVATTTQKPQQSQHIHTQESQVSYGDKNSGAMIGKNRSFSSGNIGTYNPAPSYERNTG 420

Query: 381 -------------------LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
                                       S          A  YQ G       +N+ + +
Sbjct: 421 ELYQRLMSIPVEPEDKKPLFPERKPLNVSPVEHQFVAKSADDYQFGKVLTIYAKNFALIE 480

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           ++ G++++  + A+  L   ++     +  +  Q LL P  + L   E  ++  + E L 
Sbjct: 481 SSLGIILLSLNEANYLLKLAQLMP--ENGGLKPQPLLIPLKLSLKSDEIEVLQRYKEQLT 538

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
             GI A  F    + I  +   L  +N+ QL  D+I  +    +     + I   LA+  
Sbjct: 539 LFGIDASIF-HGKVTIHTVSLPLRTQNLSQLFSDLIVFLSTKESIP--NESIAQWLAS-- 593

Query: 542 CYGSI---RSGRKMQSIEMNRLLREMEKNPNSSQCN 574
              +I   ++       +  +LL ++E+      C 
Sbjct: 594 ---AISQAKTEESWSLAQAVQLLADVERI-----CP 621


>gi|218440096|ref|YP_002378425.1| DNA mismatch repair protein [Cyanothece sp. PCC 7424]
 gi|218172824|gb|ACK71557.1| DNA mismatch repair protein MutL [Cyanothece sp. PCC 7424]
          Length = 566

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/609 (27%), Positives = 285/609 (46%), Gaps = 68/609 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L   +IN IAAGE+I+     ++EL+EN+LDAE++R+   I      + Q+ DNG
Sbjct: 1   MNIQSLPPNVINLIAAGEVIDSLGAVVRELVENALDAEATRIVISIYPD-LWWIQVADNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNT 117
            GM+ E++      H TSKI    D   I + GFRGEAL SI  V++L + SR    ++T
Sbjct: 60  KGMSLEDLKRCSLAHSTSKIRSVNDLWKITSLGFRGEALHSIAQVANLEVASRLKGGDDT 119

Query: 118 GAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           G +    S  +   + P A+ PGTIV V +LF  +P R   L S   +   I  +I  +A
Sbjct: 120 GWRIRYHSSGEAELIEPTAIAPGTIVTVSNLFRNLPVRRKGLPSTTQQLKAIQTLIYDIA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEK-------- 227
           + +P V++       + +K++  ++     P+ +++V   D        +          
Sbjct: 180 LCHPHVTWCLEQNDRSWFKISPGKTALQILPQLLNRVHQNDLQLLTQSFDTPSLPDNLSS 239

Query: 228 -SNEITLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
             N+ TL+   G+P   +R   +   V +NGR V+   +  +I +A+A T+   R+PV  
Sbjct: 240 IENQSTLELVIGLPDRCHRRRTDWVKVGVNGRVVRSPQLEQSILSAFARTLQRDRFPVCF 299

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           + ++  P Q+D N HPAK+ I   + +  +      I++A+     S++         SF
Sbjct: 300 VHIKTCPSQIDWNRHPAKTEIYLHSLSFWQEKTAAGIEQALRINTDSSA---------SF 350

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
           H     K        S  NT E+  ++  +   N  L                       
Sbjct: 351 HHGRVVKLLKVSEEKSTYNTDEQPPIKTAKSRDNLGLLE--------------------- 389

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
              A AQ+ + YI+++  +GL +++QH AHER+++E+++  +    + +  +L       
Sbjct: 390 -LRAVAQVRKTYIVAEHPNGLWLIEQHIAHERVLYEQLQDHWKIVTLETPIIL------- 441

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
                 L     E L RL ++ E FG    A+R  P +L+K++      D  + +I+ S 
Sbjct: 442 ----NQLTPTQVEQLQRLEVEIEPFGEQLWAVRTAPELLAKRS------DCGEALIELSW 491

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              LQ      +AT AC  +IR+G  +   +M R++ + +   N   C HGRP ++ L+ 
Sbjct: 492 GGDLQTAQ---VAT-ACRSAIRNGTPLNLEQMQRIIDQWKNTRNPRTCPHGRPIYLSLEE 547

Query: 586 SDIEKLFGR 594
           + + + F R
Sbjct: 548 TSLARFFRR 556


>gi|153217195|ref|ZP_01950959.1| DNA mismatch repair protein MutL [Vibrio cholerae 1587]
 gi|124113778|gb|EAY32598.1| DNA mismatch repair protein MutL [Vibrio cholerae 1587]
          Length = 653

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/653 (26%), Positives = 282/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHCAEEVNPPVAP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                      Q        P+ A    +  E    Q    + ++L  +   T S   + 
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNLWVASPKTASTGKER 420

Query: 396 ---------------------------------------VEESEATHYQLGIACAQIHQN 416
                                                    ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANTDIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKTRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|258623497|ref|ZP_05718499.1| DNA mismatch repair protein mutL [Vibrio mimicus VM573]
 gi|258584209|gb|EEW08956.1| DNA mismatch repair protein mutL [Vibrio mimicus VM573]
          Length = 653

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/656 (25%), Positives = 285/656 (43%), Gaps = 100/656 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGVDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVTQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    ST     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKMVRQYRAASTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTSSVLSKKMISSFHQD------- 348
           NVHPAK  +RF    ++ +FI Q++  A+ +    I+ S       + +  +D       
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVIAPSINDGAFHLPNVEEDAEASVAE 360

Query: 349 ------------NAPKTHLPKYATSLTNTQEKL--------------------------- 369
                              P Y       +E+                            
Sbjct: 361 PATTEASVQKRVWQAAQDTPAYPRKAPRDEEESESEHYQLRERAVTNPWVTSPKTAGSNK 420

Query: 370 -------FLQENRLSTNDLLPSDDPTYSEDND--------PVEESEATHYQLGIACAQIH 414
                    ++  ++   L+ + D    + N            ++E    +LG A   + 
Sbjct: 421 EKYGSVSVSKKEAVAYQTLMQTPDLPDEDPNSSPVSTSSLQTTKTEIVIEKLGKAIQVVE 480

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y++  ++ G V++  H A    +  +   +     + +Q LL P  + L E E  +  
Sbjct: 481 GEYLLMSSSQGCVLISLHQAQVVKL--RGLLNAQHGALKAQPLLVPLSLKLSESEWQVAQ 538

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI----------PQLLRDIIDE--IID 522
            H + L +LGI+ +    ++I +  +P  L ++N+            +  + +    + D
Sbjct: 539 THLDSLLQLGIELKTRANHSIMVMAVPQPLRQQNLQQLLPDLLSYAAVAAEPLSHQVLAD 598

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN---PNSSQCNH 575
             T   + ++ +  LA                 E   L+ E+E+           H
Sbjct: 599 WLTQQIVVEKRDYTLA-----------------EAIGLIAELEQLWQGRLPLHDPH 637


>gi|119946846|ref|YP_944526.1| DNA mismatch repair protein MutL [Psychromonas ingrahamii 37]
 gi|171769133|sp|A1SZL2|MUTL_PSYIN RecName: Full=DNA mismatch repair protein mutL
 gi|119865450|gb|ABM04927.1| DNA mismatch repair protein MutL [Psychromonas ingrahamii 37]
          Length = 628

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/563 (27%), Positives = 272/563 (48%), Gaps = 34/563 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L+ ++ NQIAAGE++ERP+  +KELIENSLDA ++++E  I  GG    ++ DNG
Sbjct: 1   MPIQILAARLANQIAAGEVVERPASVVKELIENSLDAGATKIEIDIEKGGAKCIRVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSKIS  DD   I + GFRGEAL S+ +VS LT  S+P      
Sbjct: 61  AGVCQEQLTLALSRHATSKISHLDDLEAIVSLGFRGEALASVSSVSRLTFTSKPADQEQA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   GT VEV DLFF  PAR  FLK+E+ E   I ++IRR+A+
Sbjct: 121 WQAIAEGRDMQVTIQPAAHPQGTTVEVLDLFFNTPARRRFLKTEKTEFQHIDELIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +  +++F         ++     T     +R++ +  E F+++A+      N + + G+ 
Sbjct: 181 SRFEITFVLKHNHKIVHQYRATQTQSQQEKRLASICSESFVSSALYFQNSDNALKISGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                 R + +  Y +INGR ++DK I   I+  YA ++P G++P  V+ +E DP QVDV
Sbjct: 241 SDKLSARSSNDVQYCYINGRVIRDKLINHAIKQVYAYSLPQGKFPAYVIYIECDPDQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------- 344
           NVHP+K  +RF     + +FI+ ++   +N+  +S S   S+   S              
Sbjct: 301 NVHPSKHEVRFHQARWVHDFIVSTLTVTLNESPLSASEPQSQPKPSEHAYLPANRGEEKT 360

Query: 345 ----------------FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS-DDP 387
                             Q  AP +   K  T+    Q K+    + ++   L  S D+ 
Sbjct: 361 DSQYEPKEKNKSAGRVNEQTAAPSSGYAKRETNPQLDQAKMAAYCDFVAEAHLPFSADEQ 420

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             S  +D    +            +++    +       +++        +   ++   +
Sbjct: 421 QSSTLSDLTFATVVCLIDRQYLLIKLNAKQQLLNIDSPFLVLSLENVDLMIKQMELFAAW 480

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
           +  ++ +Q LL P  ++L         + +E   RLG   +  G + + I ++PA+L + 
Sbjct: 481 SDGEVIAQPLLLPVRVELDALLLKTSEDFNELFMRLGFVFKIQG-SKLIISKVPALLRQA 539

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQ 530
            + +++ +++  +  +      Q
Sbjct: 540 PVAKIIPELLTFLSQTDNNMDAQ 562


>gi|150020662|ref|YP_001306016.1| DNA mismatch repair protein MutL [Thermosipho melanesiensis BI429]
 gi|226723043|sp|A6LL30|MUTL_THEM4 RecName: Full=DNA mismatch repair protein mutL
 gi|149793183|gb|ABR30631.1| DNA mismatch repair protein MutL [Thermosipho melanesiensis BI429]
          Length = 551

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 293/595 (49%), Gaps = 49/595 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL + ++++IAAGE +  P   +KEL+EN+LDA ++++E  I  GGKS+ ++ DNG 
Sbjct: 3   KIKKLDKNVVSRIAAGEAVAGPFSVVKELVENALDASATKIEIEILNGGKSYIKVKDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ +++ ++++ H TSKI D  D  N+++FGFRGEAL SI  VS L + S   + +   
Sbjct: 63  GMSRDDLLLSIEEHTTSKIEDFEDIYNLYSFGFRGEALSSISKVSKLVITSNDGKESNRL 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     K     P     GTIVEV DLFF +PAR  FLKS+ VE   + + + +  +  
Sbjct: 123 EVIGGKIKDIKEYPT-SEKGTIVEVYDLFFNVPARRKFLKSDNVEKRYVVEYVEKFLLGN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V     +      ++ + +  GN  +R   +  E      V    + +   ++G    
Sbjct: 182 PDVEIVLKSDG----EVVYNAVKGNLEDRFRLIFPE------VREFTEVSGKYVKGIISS 231

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P++ R N      F+  R V DK +     T Y E +   ++P  VL +E+ PR VDVNV
Sbjct: 232 PSYYRNNRTGQIFFVQKRFVIDKMLYYIFETGYGEALL--KHPYGVLFIEVPPRFVDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  ++F NP +I + I +++++ I K    +  +  KK  ++ +++     + PK  
Sbjct: 290 HPQKLEVKFSNPNVIYSDITRTVREGIKKF--VSKKIFVKKEQNTVNENKLNYAYGPKSK 347

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              TN +                           + +   E    ++      + + Y++
Sbjct: 348 PFQTNIE--------------------------KNMLFNVEKKQLEVKRDIVVLKKRYVL 381

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            ++ DG+ I+D HAAHER++++ + +  +  K+    L+ P  I + +    +     ED
Sbjct: 382 FESNDGIYIMDFHAAHERILYDNIIKQLDE-KVERLDLMIPIEIKIGKSFLQIAEGRKED 440

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
             R G    +     I +  IP+ +   ++ ++L +I+DE             +++I+A 
Sbjct: 441 FKRFGFNI-KIDKEKIIVLSIPSFIKPSDVVEVLMEILDEYRILGEN---PKSMKHIIAD 496

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  ++++G  +   E  +L+ E+ K    + C HGRP F+K+   +++  F R
Sbjct: 497 KACKKAVKTGYDILESEAKQLVEEVLK-RGLTTCPHGRPLFLKITYKELDSFFER 550


>gi|297582273|ref|ZP_06944187.1| DNA mismatch repair protein MutL [Vibrio cholerae RC385]
 gi|297533492|gb|EFH72339.1| DNA mismatch repair protein MutL [Vibrio cholerae RC385]
          Length = 653

 Score =  389 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 284/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANTAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|153827310|ref|ZP_01979977.1| DNA mismatch repair protein MutL [Vibrio cholerae MZO-2]
 gi|149738776|gb|EDM53118.1| DNA mismatch repair protein MutL [Vibrio cholerae MZO-2]
          Length = 653

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 284/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANTAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKTRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|15640372|ref|NP_229999.1| DNA mismatch repair protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147675065|ref|YP_001218614.1| DNA mismatch repair protein [Vibrio cholerae O395]
 gi|153823684|ref|ZP_01976351.1| DNA mismatch repair protein MutL [Vibrio cholerae B33]
 gi|227080557|ref|YP_002809108.1| DNA mismatch repair protein MutL [Vibrio cholerae M66-2]
 gi|229506859|ref|ZP_04396367.1| DNA mismatch repair protein MutL [Vibrio cholerae BX 330286]
 gi|229508663|ref|ZP_04398157.1| DNA mismatch repair protein MutL [Vibrio cholerae B33]
 gi|229516045|ref|ZP_04405496.1| DNA mismatch repair protein MutL [Vibrio cholerae RC9]
 gi|229606373|ref|YP_002877021.1| DNA mismatch repair protein [Vibrio cholerae MJ-1236]
 gi|254851656|ref|ZP_05241006.1| DNA mismatch repair protein mutL [Vibrio cholerae MO10]
 gi|255747145|ref|ZP_05421088.1| DNA mismatch repair protein MutL [Vibrio cholera CIRS 101]
 gi|262147191|ref|ZP_06027996.1| DNA mismatch repair protein MutL [Vibrio cholerae INDRE 91/1]
 gi|262166929|ref|ZP_06034649.1| DNA mismatch repair protein MutL [Vibrio cholerae RC27]
 gi|298501245|ref|ZP_07011043.1| DNA mismatch repair protein mutL [Vibrio cholerae MAK 757]
 gi|20043258|sp|Q9KV13|MUTL_VIBCH RecName: Full=DNA mismatch repair protein mutL
 gi|172047712|sp|A5F3L5|MUTL_VIBC3 RecName: Full=DNA mismatch repair protein mutL
 gi|254766184|sp|C3LR77|MUTL_VIBCM RecName: Full=DNA mismatch repair protein mutL
 gi|9654761|gb|AAF93518.1| DNA mismatch repair protein MutL [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|126518801|gb|EAZ76024.1| DNA mismatch repair protein MutL [Vibrio cholerae B33]
 gi|146316948|gb|ABQ21487.1| DNA mismatch repair protein MutL [Vibrio cholerae O395]
 gi|227008445|gb|ACP04657.1| DNA mismatch repair protein MutL [Vibrio cholerae M66-2]
 gi|227012201|gb|ACP08411.1| DNA mismatch repair protein MutL [Vibrio cholerae O395]
 gi|229346948|gb|EEO11915.1| DNA mismatch repair protein MutL [Vibrio cholerae RC9]
 gi|229354298|gb|EEO19227.1| DNA mismatch repair protein MutL [Vibrio cholerae B33]
 gi|229355964|gb|EEO20883.1| DNA mismatch repair protein MutL [Vibrio cholerae BX 330286]
 gi|229369028|gb|ACQ59451.1| DNA mismatch repair protein MutL [Vibrio cholerae MJ-1236]
 gi|254847361|gb|EET25775.1| DNA mismatch repair protein mutL [Vibrio cholerae MO10]
 gi|255735194|gb|EET90596.1| DNA mismatch repair protein MutL [Vibrio cholera CIRS 101]
 gi|262024634|gb|EEY43315.1| DNA mismatch repair protein MutL [Vibrio cholerae RC27]
 gi|262031372|gb|EEY49981.1| DNA mismatch repair protein MutL [Vibrio cholerae INDRE 91/1]
 gi|297539999|gb|EFH76062.1| DNA mismatch repair protein mutL [Vibrio cholerae MAK 757]
          Length = 653

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/653 (26%), Positives = 285/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  +  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDLEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++ + ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRVDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIDTTQQERVWQAVQNTPDYPRKAPRDNDRDESDNPQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|153830889|ref|ZP_01983556.1| DNA mismatch repair protein MutL [Vibrio cholerae 623-39]
 gi|148873623|gb|EDL71758.1| DNA mismatch repair protein MutL [Vibrio cholerae 623-39]
          Length = 653

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 284/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHCTEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDSQQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQYGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|229526909|ref|ZP_04416312.1| DNA mismatch repair protein MutL [Vibrio cholerae bv. albensis
           VL426]
 gi|229336078|gb|EEO01097.1| DNA mismatch repair protein MutL [Vibrio cholerae bv. albensis
           VL426]
          Length = 653

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/653 (26%), Positives = 288/653 (44%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----------------K 340
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++                  
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHSAEEVNPPVVP 360

Query: 341 MISSFHQDNAPK-----THLPKYATSLTNTQEKLFLQ----------------------- 372
           MI +  Q+   +        P+ A    +  E    Q                       
Sbjct: 361 MIETTQQERVWQAVQNMPDYPRKAPRDNDRDESDNQQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANTAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKTRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|77163867|ref|YP_342392.1| DNA mismatch repair protein [Nitrosococcus oceani ATCC 19707]
 gi|76882181|gb|ABA56862.1| DNA mismatch repair protein MutL [Nitrosococcus oceani ATCC 19707]
          Length = 583

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/603 (27%), Positives = 283/603 (46%), Gaps = 42/603 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   + NQIAAGE++ERP+  +KEL+EN+LDA + R+E     GG    ++ D+G 
Sbjct: 8   RIQILPPALANQIAAGEVVERPASVLKELVENALDAGAQRIEIETEAGGIGLIRVRDDGC 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+A+  H TSK+   ++  NI T GFRGEAL SI AVS L+L SR   N  G 
Sbjct: 68  GIHHNDLPLALSSHATSKVRHGEELLNITTLGFRGEALASIDAVSRLSLSSRMADNEHGW 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I     + + V+P+A   GT VEVRDLF+  PAR  FL+ E+ E   +  +  ++A+++
Sbjct: 128 CIR----ENTPVQPIAHPLGTTVEVRDLFYNTPARRRFLRGEKTEFIRLRTIQTQLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            ++SF  S  +     +   +      +RI+++ G +F  +++    +   + L G+ G 
Sbjct: 184 FEISFRISYNRRPFLTLPACTCPPEQLKRITELCGRNFAEHSMYFKREIEGLCLWGWLGH 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F R   +  Y ++N R V+DK +    R AY   +  GR+P  +L LE+   QVDVN 
Sbjct: 244 PEFARSQTDLQYCYVNHRMVRDKLLSHAARQAYGNRLSQGRHPAYLLYLELPTHQVDVNA 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR    +  FI++++ + + +                   +   +    ++ 
Sbjct: 304 HPAKHEVRFRESRQVHGFIVRTLAEILEQT----------------EPEGEHRLASGEFR 347

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           +       K    +  L            + + N   +       + G   A +   Y++
Sbjct: 348 SHPHEVLGKEQAGDTYLVAEVPGSYGPRKHGKHNPLSKGRNDAPSRFGQVQAFVLGRYLL 407

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++ + GL++VD   A   L   ++R  + +  I  Q LL P    +   +      H ++
Sbjct: 408 TENSQGLMLVDLPIARAHLAQARLRTAYAAGHIIRQPLLLPLTFQVSLQQAEWTERHVQE 467

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL-A 538
           L +LG+   R GP  + +REIPA + + ++  LL  ++ ++         +  +  ++ A
Sbjct: 468 LRKLGLGLHRLGPQTVVLREIPAAIRELDLEGLLLALLAQLTRQQHIMPAEIPLGELIVA 527

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKN---------PNSSQCNHGRPTFIKLKLSDIE 589
             A Y +  + R     EMN  L+E+E           P             +L   +I 
Sbjct: 528 LTAQYPASTTSRP-SLQEMNAFLQELENLYQIETGLKAPLPW---------RELPEHEIA 577

Query: 590 KLF 592
           + F
Sbjct: 578 QWF 580


>gi|229512377|ref|ZP_04401852.1| DNA mismatch repair protein MutL [Vibrio cholerae TMA 21]
 gi|229350592|gb|EEO15537.1| DNA mismatch repair protein MutL [Vibrio cholerae TMA 21]
          Length = 653

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/653 (26%), Positives = 281/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                      Q        P+ A    +  E    Q    + ++   +   T S   + 
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNPWVASPKTASTGKER 420

Query: 396 ---------------------------------------VEESEATHYQLGIACAQIHQN 416
                                                    ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEELSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|297565947|ref|YP_003684919.1| DNA mismatch repair protein MutL [Meiothermus silvanus DSM 9946]
 gi|296850396|gb|ADH63411.1| DNA mismatch repair protein MutL [Meiothermus silvanus DSM 9946]
          Length = 540

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/593 (26%), Positives = 262/593 (44%), Gaps = 67/593 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL  +++ +IAAGE++   +  ++EL+EN+LDA +SR++  +  GG S   ++DNG G
Sbjct: 2   IRKLPPELVREIAAGEVVTGIADVVRELLENALDAGASRIQVELEEGGLSRIVVSDNGLG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  +E+P+AV+ H +SK+  D + I T GFRGE L +I     L + SRPP    GA + 
Sbjct: 62  IPKDELPLAVEAHASSKLF-DLARITTLGFRGEGLYAIRQAGRLRITSRPPGQLGGATLE 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             G+ I+         GT VEV  LF  +PAR   L+S   E   +  ++ R  + +P++
Sbjct: 121 ALGDSITLSEH-PAPAGTRVEVVRLFEHLPARRQSLESPAQEARKVAHLLSRYLLHHPRL 179

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
                     +         G+F +    V G    N  + L        L G    P  
Sbjct: 180 WLKLVVDGEEQLT----HAGGSFSDAARLVWGSVTANRLLSLEFAQAPYRLSGLLSRPEL 235

Query: 243 NRGNANQFYVFINGRTV-QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   ++ ++ INGR V   + +  T+  AY E +P+G+YPV VL LE+ P  V VN  P
Sbjct: 236 SRPRRDRLFLAINGRPVEWPENLAKTLLEAYRELLPVGQYPVGVLNLELPPESVLVNTAP 295

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
            KS  R   P  + +F+ +++Q  ++   ++ +                P+   P     
Sbjct: 296 DKSRPRLLQPEPVLDFLARAVQGLLSAHPLARTL---------------PEPSPPFGPAP 340

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
            +    KL                                             + Y++++
Sbjct: 341 TSGAFPKL--------------------------------------RYLGVFRELYLLAE 362

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L +VDQHAAHER+I+E++ + +         L  PE++ L   E     E   +L 
Sbjct: 363 ADDQLYVVDQHAAHERVIYEELVRRYREEPH--VELAHPELLTLSVDEEMNYAERSGELE 420

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
             G+  E FG     +R IPA L+    P L+ ++    +         +    +LA +A
Sbjct: 421 AAGLVLEPFGSGRYRVRTIPAFLAAH--PNLVGEVAKGAL---RGPGFVEAWRTVLARLA 475

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +I++G  +  +    LL  +        C HGRPT + L   ++ + FGR
Sbjct: 476 CLPAIKAGHPLSQVSAQALLDRLAACELPWVCPHGRPTALVLSELELARRFGR 528


>gi|254292137|ref|ZP_04962909.1| DNA mismatch repair protein MutL [Vibrio cholerae AM-19226]
 gi|150421936|gb|EDN13911.1| DNA mismatch repair protein MutL [Vibrio cholerae AM-19226]
          Length = 653

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/653 (26%), Positives = 281/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                      Q        P+ A    +  E    Q    + ++   +   T S   + 
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNHWVASPKTASSGKER 420

Query: 396 ---------------------------------------VEESEATHYQLGIACAQIHQN 416
                                                    ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTVVSSIEAVKANTAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|262172557|ref|ZP_06040235.1| DNA mismatch repair protein MutL [Vibrio mimicus MB-451]
 gi|261893633|gb|EEY39619.1| DNA mismatch repair protein MutL [Vibrio mimicus MB-451]
          Length = 653

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/656 (25%), Positives = 284/656 (43%), Gaps = 100/656 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGVDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVTQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    ST     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKMVRQYRAASTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--------- 348
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  ++       + +         
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVIAPSINDGAFHLPNVEEDAEASVAE 360

Query: 349 ------------NAPKTHLPKYATSLTNTQEKL--------------------------- 369
                              P Y       +E+                            
Sbjct: 361 PATTEASVQKRVWQAAQDTPAYPRKAPRDEEESESEHYQLRERAVTNPWVTSPRMAGLNK 420

Query: 370 -------FLQENRLSTNDLLPSDDPTYSEDND--------PVEESEATHYQLGIACAQIH 414
                    ++  ++   L+ + D +  + N            ++E    +LG A   + 
Sbjct: 421 EKYGLVSVSKKEAVAYQTLMQTPDLSDEDPNSSPVSTSSLQTTKTEIVIEKLGKAIQVVE 480

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y++  ++ G V++  H A    +  +   +     + +Q LL P  + L E E  +  
Sbjct: 481 GEYLLMSSSQGCVLISLHQAQLVKL--RGLLNAQHGALKAQPLLVPLSLKLSESEWQVAQ 538

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI----------PQLLRDIIDE--IID 522
            H E L +LGI+ +    ++I +  +P  L ++N+            +  + +    + D
Sbjct: 539 THLESLLQLGIELKTRANHSIMVMAVPQPLRQQNLQQLLPDLLSYAAVAAEPLSHQVLAD 598

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN---PNSSQCNH 575
             T   + ++ +  LA                 E   L+ E+E+           H
Sbjct: 599 WLTQRIVVEKRDYTLA-----------------EAIGLIAELEQLWQGHLPLHDPH 637


>gi|17230547|ref|NP_487095.1| DNA mismatch repair protein [Nostoc sp. PCC 7120]
 gi|20455095|sp|Q8YSM9|MUTL_ANASP RecName: Full=DNA mismatch repair protein mutL
 gi|17132149|dbj|BAB74754.1| DNA mismatch repair protein [Nostoc sp. PCC 7120]
          Length = 563

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 150/610 (24%), Positives = 269/610 (44%), Gaps = 77/610 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L ++++  I AGE+I+  +  ++EL+ENSLDA ++R+   +    +   ++ DNG 
Sbjct: 4   TIQALPQEVVYLITAGEVIDSFAAVVRELVENSLDAGANRIVVYLW-PQQWRVRVADNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++  A   H TSKI    D   IH+ GFRGEAL S+  ++ + ++SR P+N    
Sbjct: 63  GMNLDDLQQAASAHSTSKIRSSADLWKIHSLGFRGEALHSLTTLADVEIISRAPENVGWR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     K   V   A+ PGT+V V +LF +  AR   L +   +   +   I+++A+ +
Sbjct: 123 VVYGDSGKAVHVEATAIAPGTVVTVSNLFASCAARRQGLPTTAQQMKAVQATIQQIALCH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSNEITLQG--- 235
           P+ ++         + ++  +T G   P+ + Q+   D     +E+    N         
Sbjct: 183 PQTTWQVWQNDRIWFTISPAATAGQLIPQFLPQLRPSDLQEIKLEIPNPENPQLSTNNKP 242

Query: 236 -------YTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
                    G+P   +R   +   V INGR ++   +  TI  A+  T+P  RYP+  + 
Sbjct: 243 NASALALVVGLPDRCHRHRPDWVRVAINGRMIKLPELEQTILAAFHRTLPRDRYPLCFVH 302

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-- 345
           L I P Q++ N +PAK+ I   + +  +  + Q+I +A+     +    +    +S    
Sbjct: 303 LLISPDQINWNRNPAKTEIYLHDLSYWQEQVTQAINQALRISAANIPESVQTTRVSQLLK 362

Query: 346 -HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             ++       P+ A    NTQ                                      
Sbjct: 363 AAEEKGNYNFNPRNANPADNTQN------------------------------------- 385

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
               A AQ+   YI+++   G+ +V+QH AHER+++E++  ++    +    +L      
Sbjct: 386 -YLKAVAQVSNTYIVAEHPGGMWLVEQHIAHERVLYEQLCDNWRLIPVEPPIIL------ 438

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
                  L       L R+G+  + FG    A+R +PA+L ++       D  + I++ S
Sbjct: 439 -----YQLSPAQVAQLQRIGLDIDIFGEQLWAVRNLPAMLQQRE------DCAEAILELS 487

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               LQ     +    AC  +IR+G  M   EM +LL + ++  N   C HGRP ++ L 
Sbjct: 488 WGGDLQTAQVAV----ACRSAIRNGTPMSLPEMQKLLDDWQRTRNPRTCPHGRPIYLSLD 543

Query: 585 LSDIEKLFGR 594
            S + + F R
Sbjct: 544 ESSLSRFFRR 553


>gi|121591551|ref|ZP_01678811.1| DNA mismatch repair protein MutL [Vibrio cholerae 2740-80]
 gi|121546591|gb|EAX56786.1| DNA mismatch repair protein MutL [Vibrio cholerae 2740-80]
          Length = 622

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/565 (27%), Positives = 259/565 (45%), Gaps = 66/565 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  +  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDLEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++ + ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRVDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIDTTQQERVWQAVQNTPDYPRKAPRDNDRDESDNPQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIP 501
              L +LGI+ +    ++I +  +P
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVP 563


>gi|229526991|ref|ZP_04416387.1| DNA mismatch repair protein MutL [Vibrio cholerae 12129(1)]
 gi|229335514|gb|EEO00995.1| DNA mismatch repair protein MutL [Vibrio cholerae 12129(1)]
          Length = 653

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 285/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASVSKKEAAVYQTLMQTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    +++ +  +P  L ++N+ QLL D++     SS +  L       
Sbjct: 539 SSALLQLGIELKTRTNHSMMVMAVPQPLRQQNLQQLLPDLLSYAASSSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|119483288|ref|ZP_01618702.1| DNA mismatch repair protein [Lyngbya sp. PCC 8106]
 gi|119458055|gb|EAW39177.1| DNA mismatch repair protein [Lyngbya sp. PCC 8106]
          Length = 563

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 159/603 (26%), Positives = 267/603 (44%), Gaps = 63/603 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E II  IAAGE+I+     ++EL+ENSLDA ++R+   ++   +   Q+ DNG 
Sbjct: 4   QIQPLPEDIIYLIAAGEVIDSLEAVVRELVENSLDAGATRISISVS-PEQWLIQVADNGV 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM    +  A   H TSKI+   D S I + GFRGEAL S+  ++ L ++SRP       
Sbjct: 63  GMDLANLKQAATAHSTSKITSIADLSQITSLGFRGEALHSLAQLAQLEILSRPQGEIGWR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     +      VA+ PGT+V V DLF     R   L S   +   I  ++  +A+ +
Sbjct: 123 VVYNRQGEPLEPEAVAIAPGTVVTVSDLFDNWQGRRQALPSATQQLRSIYRIVSHIALCH 182

Query: 180 PKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEI------T 232
           P V++      ++R +++   +     P+ +  V   D     VELN  + +I      +
Sbjct: 183 PHVNWQVRQGSTSRLQISPGGAAASILPQILRGVRIGDLQRLQVELNPPTADIASPRPSS 242

Query: 233 LQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           L+G  G+P   +R   +   + +NGR V+   +  +I  A++ T+P  R+PV  + L I+
Sbjct: 243 LEGVLGLPDRCHRHRPDWVKIALNGRVVRTSELEQSILAAFSRTVPRDRFPVCFIHLRIN 302

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P ++D N HPAK  +   +    +  I   I + +     +  + L +            
Sbjct: 303 PAEIDWNRHPAKEEVYLHHLNYWQEQIQACIDQTLRLNPATAEAKLQR------------ 350

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
                               Q  ++S          +     D    +E        A A
Sbjct: 351 ------------------VDQLLKVSEKQGHYHTTRSIQAKKDQTS-TEQLSLIELQAIA 391

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q+H  YI+++   GL +V+QH AHER+++E++ + +    +    LL             
Sbjct: 392 QVHNTYIVAEHPHGLWLVEQHIAHERVLYEQLCEAWKQVSVEPPILLQHLSPS------- 444

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
                 E L  LG++ + FG    A+R +P +L+++       D  D +I+ S    LQ 
Sbjct: 445 ----QLEQLQGLGLQVDPFGEGLWAVRTVPEMLAQRE------DCHDALIELSLGKDLQ- 493

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
                    AC  +IR+G  +   EM  LL +  +  N   C HGRP F++L  S + + 
Sbjct: 494 ---AAQVATACRSAIRNGTPLSLTEMQTLLEQWVRTRNPRTCPHGRPIFLRLDESSLSRF 550

Query: 592 FGR 594
           F R
Sbjct: 551 FRR 553


>gi|75907079|ref|YP_321375.1| DNA mismatch repair protein [Anabaena variabilis ATCC 29413]
 gi|123772753|sp|Q3MEV6|MUTL_ANAVT RecName: Full=DNA mismatch repair protein mutL
 gi|75700804|gb|ABA20480.1| DNA mismatch repair protein MutL [Anabaena variabilis ATCC 29413]
          Length = 563

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 151/610 (24%), Positives = 272/610 (44%), Gaps = 77/610 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L ++++  I AGE+I+  +  ++EL+ENSLDA ++R+   +    +   ++ DNG 
Sbjct: 4   TIQALPQEVVYLITAGEVIDSFAAVVRELVENSLDAGANRIVVYLW-PQQWRVRVADNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++  A   H TSKI    D   IH+ GFRGEAL S+  ++ + ++SR P+N    
Sbjct: 63  GMNLDDLQQAASAHSTSKIRSSADLWKIHSLGFRGEALHSLTTLADVEIISRAPENVGWR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     + + V   A+ PGT+V V +LF +  AR   L +   +   +   I+++A+ +
Sbjct: 123 VVYGDNGEATQVEATAIAPGTVVTVSNLFASCAARRQGLPTTAQQMKAVQATIQQIALCH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSNEI------- 231
           P+ ++         + ++  +T G   P+ + Q+   D     +E+    N         
Sbjct: 183 PQTTWQVWQNDRIWFTISPAATAGQLIPQFLPQLRPGDLQEIKLEIPNPENPQLSTNNKA 242

Query: 232 ---TLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
              TL    G+P   +R   +   V INGR ++   +  TI  A+  T+P  RYP+  L 
Sbjct: 243 NATTLSLVVGLPDRCHRHRPDWVRVAINGRMIKSPELEQTILAAFHRTLPRDRYPLCFLH 302

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-- 345
           L I P Q++ N +PAK+ I   + +  +  + Q+I + +     +    +    +S    
Sbjct: 303 LLISPDQINWNRNPAKTEIYLHDLSYWQEQVTQAINQTLRISAANIKESVQTTRVSQLLK 362

Query: 346 -HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             ++       P+ A    NTQ                                      
Sbjct: 363 AAEEKGNYNFNPQNANPADNTQ-------------------------------------- 384

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
               A AQ+   YI+++ + G+ +V+QH AHER+++E++  ++    +    +L      
Sbjct: 385 HYLKAVAQVSNTYIVAEHSGGMWLVEQHIAHERVLYEQLCDNWRLIPVEPPIIL------ 438

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
                  L       L R+G+  + FG    A+R +PA+L ++       D  + I++ S
Sbjct: 439 -----YQLSPAQVAQLQRIGLDIDIFGEQLWAVRNLPAMLQQRE------DCAEAILELS 487

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               LQ     +    AC  +IR+G  M   EM +LL + ++  N   C HGRP ++ L 
Sbjct: 488 WGGDLQTAQVAV----ACRSAIRNGTPMSLPEMQKLLDDWQRTRNPRTCPHGRPIYLSLD 543

Query: 585 LSDIEKLFGR 594
            S + + F R
Sbjct: 544 ESSLSRFFRR 553


>gi|153803482|ref|ZP_01958068.1| DNA mismatch repair protein MutL [Vibrio cholerae MZO-3]
 gi|124120983|gb|EAY39726.1| DNA mismatch repair protein MutL [Vibrio cholerae MZO-3]
          Length = 653

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 174/653 (26%), Positives = 284/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  LGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++      H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVMAPTINEGAFHLPHCAEEVNPPVVP 360

Query: 347 -----------QDNAPKTHLPKYATSLTNTQEKLFLQ----------------------- 372
                      Q        P+ A    +  E    Q                       
Sbjct: 361 MIETTQQERVWQAVQNTPDYPRKAPRDNDRDESDNQQVRERAVSNPWVASPKTASTGKER 420

Query: 373 --------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQN 416
                         +  + T DL   +  T S     +E  ++     +LG A   +   
Sbjct: 421 YGSASISKKEAAVYQTLMQTPDLSDEEPSTASTVVSSIEAVKANTAIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  +   H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|160947535|ref|ZP_02094702.1| hypothetical protein PEPMIC_01469 [Parvimonas micra ATCC 33270]
 gi|158446669|gb|EDP23664.1| hypothetical protein PEPMIC_01469 [Parvimonas micra ATCC 33270]
          Length = 616

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/626 (26%), Positives = 303/626 (48%), Gaps = 47/626 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LSE  I +IAAGE+IE P   IKEL+ENS+D+ ++ ++  I   GK    I+DNG
Sbjct: 1   MSIKLLSEDTIQKIAAGEVIENPYSVIKELVENSIDSGATFIKVEIKNAGKKEIMISDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  ++I +A  +H TSK++  +D  +I ++GFRGEAL SI A+S + + +R   +  G
Sbjct: 61  CGIEEDDIELAFTKHATSKLNNFEDIYSILSYGFRGEALASISAISKVDINTRTKNSEFG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               +   KI     + MN GT + +RDLF+ +P R  FLKS+  E ++IT ++   A+A
Sbjct: 121 IHCYLENNKIIRKNKIGMNLGTTIYIRDLFYNVPIRKKFLKSDAYENSIITTLMYSFALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
             K+SF +       ++    S      + I  +  +DF  N + +N + ++  + GY  
Sbjct: 181 NQKISFKYIKDSKVVFE---TSEKNTLKDDIKYIFKDDFYKNLISVNIEDSDYKIYGYIS 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F +G+    ++F+NGR + D+ I + I  + A  IP G++P  V+ +E++P  +D+N
Sbjct: 238 NNHFYKGSRASQFLFVNGRYIFDEKIRNIIEKSIATLIPKGKFPAFVMFIEVNPSLIDIN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTHLP 356
           VHP K  I+F     + N +  +I   + K   S    + ++      ++++        
Sbjct: 298 VHPNKRKIKFIFEDKLLNSLNNNITDIVLKNTTSDFISVKEEQKEKILYNEEKINNEQSS 357

Query: 357 KYATSLTNTQEKLFLQEN---RLSTNDLLPSDDPTYSEDND-------PVEESEATHYQL 406
           +     T   +  +  +N   + S +DL   +       N+        VE+ +  +  +
Sbjct: 358 EEDIIETIIYDDDYNTQNIVNKFSYDDLFKVNKDDIKTINEEDNIENYIVEDEKVENTPV 417

Query: 407 GIAC------------------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                                  +I   YI+    D  +I+D   A  RL++E +  ++N
Sbjct: 418 LEQIKLDDNTETSKNILDYEIIGKIFSKYILLSDKDEFIIIDILNAKYRLLYENLLDNYN 477

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN 508
           +  I+ Q LL P I++L E + ++     + L+ LGI+A+ F  N+IAIR +P +L+   
Sbjct: 478 NCTISKQILLFPIILELNEYKLSVFNTIKDKLNNLGIEADIFDENSIAIRTMPNLLNDNL 537

Query: 509 IPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK-- 566
             + +R+++DE++     +      E+ L  M C    R    +   E+  LL ++ K  
Sbjct: 538 DKEDIREMLDELL-----FKDNRVFEDSLYKMVCKK--RINIGLTDFEVEELLSQLSKIN 590

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLF 592
              +      +    K+   D +KLF
Sbjct: 591 LDINFYD---KKILRKISKEDFDKLF 613


>gi|260913834|ref|ZP_05920308.1| DNA mismatch repair protein MutL [Pasteurella dagmatis ATCC 43325]
 gi|260631921|gb|EEX50098.1| DNA mismatch repair protein MutL [Pasteurella dagmatis ATCC 43325]
          Length = 640

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/582 (28%), Positives = 265/582 (45%), Gaps = 59/582 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIRVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIEQGGSGLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR    N  
Sbjct: 61  VGIPKTELSLALARHATSKISCLDDLDCILSLGFRGEALASISSVSRLTLTSRTTDQNEA 120

Query: 119 AQIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +   P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMDTTIVPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   + F  +              +    +RIS + GEDF+ NA+++  + +++ L G+ 
Sbjct: 181 AKSHIQFILTHNGKTIRHYKSAVNDTQKLKRISAICGEDFVQNALQIEWRHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P F+R   +  Y +INGR V+DK I   IR AY+E +   +YP  VL L+++P  VDV
Sbjct: 241 ALPHFSRTQNDLNYCYINGRMVRDKVINHAIRQAYSEHLHNDQYPAFVLFLDLNPNDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-------KGISTSSVLSKKMISSFHQDNA 350
           NVHP K  +RF    +I +FI Q I  A+                  S ++ SS   + A
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFICQGISNALASEQANLTFHDTIQEPAPSWQVASSIKPNRA 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVE----------- 397
                    +S  + +  +  +  ENR           PT  E     E           
Sbjct: 361 AAGQNVFATSSNHSYKNNISSKFTENRPHFAQQWQHLQPTKQELQAYDELLNTEKTEKPV 420

Query: 398 -----------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE---------- 436
                      E E ++         ++ +          ++ +Q+A             
Sbjct: 421 YTHATSLYAKTEEEKSNLISTNQTTVVNISVSNVTAQTSPILFNQNAFLRTLALVENRAL 480

Query: 437 --------------RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
                         +L    ++       +  Q LL P I  L + E A   +  +   +
Sbjct: 481 LLQQQQHFYLLPVQKLQHLNIKLTLQEPPVLQQPLLIPVIFRLNDKEFAHWQQQQDFFTQ 540

Query: 483 LGIKA-ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +G +  E      + + ++P+ L ++N+ Q +  ++    + 
Sbjct: 541 VGFEFVENPQQKRLTLNKVPSCLRQQNLQQCVLSLLATPSEE 582


>gi|113461226|ref|YP_719295.1| DNA mismatch repair protein [Haemophilus somnus 129PT]
 gi|122945347|sp|Q0I463|MUTL_HAES1 RecName: Full=DNA mismatch repair protein mutL
 gi|112823269|gb|ABI25358.1| DNA mismatch repair protein MutL [Haemophilus somnus 129PT]
          Length = 615

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/555 (29%), Positives = 264/555 (47%), Gaps = 33/555 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KELIENSLDA ++ ++  I  GG +  +I DNG
Sbjct: 1   MTIKILPPQLANQIAAGEVVERPASVVKELIENSLDAGATHIQIEIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  Q N  
Sbjct: 61  IGIAKDELHLALARHATSKIASLDDLEMILSLGFRGEALASISSVSRLTLTSRTAQQNEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +   P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETSITPASHPIGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P+V+FT +      ++     TN    +RI+ + G DF+ NA+ ++ K N++ L G+ 
Sbjct: 181 AKPQVAFTLTHNNKLIHRYKSAVTNEQKIKRIATICGNDFMQNALHIDWKHNDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R   +  Y +INGR V+DK I   IR AY+E +   +YP  VL ++++P +VDV
Sbjct: 241 IQPQFARHQNDLNYCYINGRMVRDKVITHAIRQAYSEYLNNEQYPAFVLFIDLNPNEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF    +I +FI Q +  A+  +  +      +   +   +          
Sbjct: 301 NVHPTKHEVRFHQARLIHDFIYQGMTNALTSEQTNIPIQSEQSNPTKVAEPQGIWNLTTH 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND---------------PVEESEAT 402
              +     + +F Q+ +              +  ++                  E +  
Sbjct: 361 NKGNRATAGKNIFAQQPKDYDKKSSQFKPHFTANYSEVTPKKAVQKAYAELLVTHEEKTI 420

Query: 403 HYQLGIACAQIHQNYIISQTT--DGLVIVDQHAAHERLIFEKM------------RQDFN 448
                      +  YI  Q      L +++  A   +   +              R    
Sbjct: 421 ASSTLPHQFTHNATYISEQKNVLHALALIENKALLLQQNQQYFLLSIQALQHFNIRLQLQ 480

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGPNAIAIREIPAILSKK 507
            + I  QTLL P ++ L + +     +      + G    E    + I +  +P  L  +
Sbjct: 481 QSNIAQQTLLIPILLRLNKQQYQSWQQQALFFQQSGFDFTENSAQHRITLNRLPICLRTQ 540

Query: 508 NIPQLLRDIIDEIID 522
           NI +++  ++D+  +
Sbjct: 541 NIQKIILHLLDQPHE 555


>gi|262401563|ref|ZP_06078130.1| DNA mismatch repair protein MutL [Vibrio sp. RC586]
 gi|262352278|gb|EEZ01407.1| DNA mismatch repair protein MutL [Vibrio sp. RC586]
          Length = 653

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 171/653 (26%), Positives = 281/653 (43%), Gaps = 94/653 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS L L SR       
Sbjct: 61  SGIDKEELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLMLTSRTVTQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNSFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------- 349
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++    S   +         
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSEQVIAPAVNEGAFHSSQAEEVADTVEPI 360

Query: 350 --------------------------------------------APKTHLPKYATSLTNT 365
                                                        P    PK A S    
Sbjct: 361 AIETSVPDRVWQAVQSSPDYPRKVARDNPEGESENYQLRERAAANPWVASPKPAGSNKEK 420

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPV---------EESEATHYQLGIACAQIHQN 416
              + + +  +     L        E              E++  T  +LG A   +   
Sbjct: 421 FGSVSVSKKEVEVYQTLMQTPDLPDEVPHAASTNLSVIRKEQAGITIEKLGKAIQVVAGQ 480

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++  +  G V++  + A +  +  +   +     + +Q LL P  + L E E  ++  H
Sbjct: 481 YLLMSSPQGCVLISLYQAQQFKL--RGLLNAQHGALKAQPLLVPLALKLSELEWQVVQRH 538

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L +LGI+ +    ++I +  +P  L ++N+ QLL D++      S +  L       
Sbjct: 539 SSALLQLGIELKTRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQA 595

Query: 537 LATMACYGSIRSGRKM-----------QSIEMNRLLREMEKN---PNSSQCNH 575
           LA             +              E   L+ E+E+        Q  H
Sbjct: 596 LA-----------DWLTQRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 637


>gi|298491462|ref|YP_003721639.1| DNA mismatch repair protein MutL ['Nostoc azollae' 0708]
 gi|298233380|gb|ADI64516.1| DNA mismatch repair protein MutL ['Nostoc azollae' 0708]
          Length = 565

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/610 (25%), Positives = 272/610 (44%), Gaps = 76/610 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L  +++  I AGE+I+  +  ++EL+ENSLDA ++R+   I    +   ++ DNG+
Sbjct: 5   TIKALPTEVVYLITAGEVIDSLASVVRELVENSLDAGATRIVVYI-NPQQWGVRVADNGW 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  +++  A   H TSKI    D  NI + GFRGEAL S+  ++ L ++SRP     G 
Sbjct: 64  GMNFDDLQQAATAHSTSKIHSPADLWNITSLGFRGEALHSLTTLADLEILSRPVGGTEGW 123

Query: 120 QIAI-SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q     G K+ + +  A+ PGT+V V +LF     R   L +   +   + +V++++A+ 
Sbjct: 124 QFVYGDGGKVVNRKVTAIAPGTVVTVNNLFANCLPRRQGLPTPTQQIKAVQNVVQQIALC 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY- 236
           +P+V++         + +    S     P+ + QV   D     +++    + +  +   
Sbjct: 184 HPQVTYQVWQNYREWFTIYSGLSVEKIIPQILPQVRQSDLKEVQLKVPNSQSPVPSRDVA 243

Query: 237 -----------TGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
                       G+P   +R   +   V INGR ++   +  TI +A+  T+P  RYPV 
Sbjct: 244 CSVSTPLSTLVIGLPDRCHRNRPDWVKVAINGRIIKSPELEQTIFSAFHRTLPRDRYPVC 303

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L L + P Q++ N HPAK+ I     +  +  I Q+I +A+     +    +    +S 
Sbjct: 304 FLHLTVSPDQINWNRHPAKTEIYLNGLSYWQEQITQAINQALLISEANIKESVYTTRVSK 363

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             Q    K                                        N   + +++   
Sbjct: 364 LLQVAEAKGS-------------------------------------YNFNYKSTDSNTK 386

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            L  A AQ+   YI+++ + G+ +V+QH AHER+++E++  ++    I S  +L      
Sbjct: 387 NLLQAVAQVSNTYIVAEHSGGMWLVEQHIAHERVLYEQLCDNWQIVPIESPIIL------ 440

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
                  L       L  LG+  E FG    A+R IPA+L  +       D  + +++ S
Sbjct: 441 -----YQLSSAQVTQLQSLGLDIEPFGEKLWAVRNIPAMLQHRE------DSCEALLELS 489

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               LQ     +    AC  +IR+G  M   EM +LL + ++  N   C HGRP ++ L+
Sbjct: 490 WGGDLQTAQVAV----ACRTAIRNGTPMNLPEMQQLLNDWQRTRNPRTCPHGRPIYLSLE 545

Query: 585 LSDIEKLFGR 594
            S + + F R
Sbjct: 546 ESALSRFFRR 555


>gi|94676529|ref|YP_589012.1| DNA mismatch repair protein MutL [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123384113|sp|Q1LSQ2|MUTL_BAUCH RecName: Full=DNA mismatch repair protein mutL
 gi|94219679|gb|ABF13838.1| DNA mismatch repair protein MutL [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 602

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 166/557 (29%), Positives = 274/557 (49%), Gaps = 22/557 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I +LS ++INQIAAGE++ERP+  +KELIENSLDA ++R++  +  GG    +I DNG
Sbjct: 1   MQIHRLSPQLINQIAAGEVVERPASVVKELIENSLDAGATRIDIEVELGGAKVIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           +G++ ++I +AV RH TSKIS  +D   I + GFRGEAL SI +V+HL L SR  + N  
Sbjct: 61  YGISKKDIVLAVARHTTSKISSIEDLECIKSMGFRGEALASISSVAHLNLTSRTAKQNEA 120

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+      +   + P+A   GT VEV DLF+  PAR  F+++EQ E   I +VIRRMA+
Sbjct: 121 WQVYTERYTEKVMLLPIAHPVGTTVEVLDLFYNTPARRKFMRAEQTEFKHIEEVIRRMAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F                    +  R+S++ G  F+NNA++++ ++ + ++QG+ 
Sbjct: 181 ARFDVTFILQHNNKIVQHYRAVKEPSQYWRRLSRLCGNTFVNNALKISWQNIDFSIQGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+         Y ++N R +++K I   IR AY + +     P  V+ + I+P+Q+D+
Sbjct: 241 EDPSC-IKLPEMQYSYVNQRIIRNKLINHAIRHAYQDQLKGPHQPSFVIFIVINPQQLDI 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---------- 347
           NVHPAK  I+F     + +FI Q++   + ++   +S            +          
Sbjct: 300 NVHPAKKEIKFYEARKVHHFIYQALMTVLQQRVKLSSDTCYSTTQKPIGKIIPSHALNQL 359

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQ-ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           +      L  Y+ +  N  E L  Q         +        +  N          Y  
Sbjct: 360 NEGKNNILVSYSAAAKNADELLSNQIIQDPDEAKMQDIPAKCQATKNSCSTSLSNDFYSF 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G         Y + ++  GL ++    A   +   ++  + NS  I +Q LL P  I L 
Sbjct: 420 GKMLTFCSPCYALLESAQGLSLLSLQFAERYITERQLTPENNSDTILAQPLLIPLRIILS 479

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP-AILSKKNIPQLLRDIIDEIIDSST 525
            GE + + +H   L R+GI  +    N   +  +P  +L KKN+  L+ D++  + + ++
Sbjct: 480 NGEASALHQHRLLLQRMGILLQP-NENETILNAVPLPLLRKKNLSNLILDLLRYLNNETS 538

Query: 526 TYTLQDRIENILATMAC 542
                     I + +AC
Sbjct: 539 VT-----YHKIASWLAC 550


>gi|291294832|ref|YP_003506230.1| DNA mismatch repair protein MutL [Meiothermus ruber DSM 1279]
 gi|290469791|gb|ADD27210.1| DNA mismatch repair protein MutL [Meiothermus ruber DSM 1279]
          Length = 544

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/593 (27%), Positives = 265/593 (44%), Gaps = 66/593 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL  ++I +IAAGE+I  P+  ++EL+EN+LDA ++R+   + GGG     + DNG G
Sbjct: 2   IRKLPPELIREIAAGEVISGPADVVRELLENALDAGATRLYIELWGGGLDKIVVRDNGLG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  EE+ +A++ H TSK++ D  NI T GFRGE L +I   + + L SRPPQ   GA + 
Sbjct: 62  IPREELGLALEHHTTSKLT-DLQNIRTLGFRGEGLWAIRQAARVRLTSRPPQQLGGATLT 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +K           GT VEV  LF  +PAR N L++   E   +  ++ R  +  P++
Sbjct: 121 AFQDKTELHEH-PAPAGTQVEVTALFCHLPARRNALEAPAAEGRKVVHLVSRYLLHRPEI 179

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           +         +         G F E I  + G    N  + L       TL+G    P  
Sbjct: 180 ALRLVVDGEEK----IAHAGGGFAEVIKLLWGSVVANRLLPLEAAEGPFTLRGLLSRPEL 235

Query: 243 NRGNANQFYVFINGRTV-QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   ++  + +N R V   + +L  +  AY E +P G++PV VL LEI    + +N  P
Sbjct: 236 SRPRRDRLLLALNRRPVEWPEPLLQAVLAAYKELLPAGQFPVGVLNLEIPTEHLLINTSP 295

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
            KS +R   P  I  F+ Q++Q  ++   ++ +                     P   T 
Sbjct: 296 DKSRVRLIRPEAILGFVSQAVQGLLSAHPLARALPE------------------PAPLTG 337

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
               Q   F +                                          + Y++++
Sbjct: 338 PAPVQRVRFPR----------------------------------LRYLGSFRELYLLAE 363

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L +VDQHAAHER+++E++ + +         L  PE++ L  GE   + E  E L 
Sbjct: 364 AGDELYVVDQHAAHERILYEELSRRYLEEPP--LELPHPELLSLSLGEEMNLAERLEALE 421

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
           + G++ E FGP    +R IPA L+    P L+ +++     S    +       +LA +A
Sbjct: 422 QAGLQIEPFGPGKYRVRTIPAFLAG--YPSLVGEVV---KGSLGASSFAVAWRTVLARLA 476

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +I++G  + S     LL  +        C HGRPT + L   ++ + FGR
Sbjct: 477 CLPAIKAGHPLSSASAQALLDALAGCELPWVCPHGRPTVLVLGEGELARRFGR 529


>gi|262163596|ref|ZP_06031339.1| DNA mismatch repair protein MutL [Vibrio mimicus VM223]
 gi|262027963|gb|EEY46625.1| DNA mismatch repair protein MutL [Vibrio mimicus VM223]
          Length = 653

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/567 (28%), Positives = 259/567 (45%), Gaps = 68/567 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGVDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVTQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    ST     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKMVRQYRAASTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI------------------------NKKGIST 333
           NVHPAK  +RF    ++ +FI Q++  A+                         +  ++ 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVIAPSINDGAFHLPNVEEDAEASVAE 360

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--------------------- 372
            +     +     Q        P+ A       E    Q                     
Sbjct: 361 PATTEASVQKRVWQAAQNTPTYPRKAPRDEEESESEHYQLRERAVTNPWVTSPRTAYSNK 420

Query: 373 ----------------ENRLSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIH 414
                           +N + T DL   D  +       ++  ++E    +LG A   + 
Sbjct: 421 EKYGSVSVSKKEAVAYQNLMQTPDLSDEDPNSSPVSTSSLQTTKTEIVIEKLGKAIQVVE 480

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y++  ++ G V++  H A    +  +   +     + +Q LL P  + L E E  +  
Sbjct: 481 GEYLLMSSSQGCVLISLHQAQVVKL--RGLLNAQHGALKAQPLLVPLSLKLRESEWQVAQ 538

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIP 501
            H E LH+LGI+ +    ++I +  +P
Sbjct: 539 THLESLHQLGIELKTRANHSIMVMAVP 565


>gi|67920569|ref|ZP_00514089.1| DNA mismatch repair protein [Crocosphaera watsonii WH 8501]
 gi|67858053|gb|EAM53292.1| DNA mismatch repair protein [Crocosphaera watsonii WH 8501]
          Length = 554

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/600 (25%), Positives = 274/600 (45%), Gaps = 66/600 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS +IIN IAAGE+I+  +  ++EL+EN++DA+++R+   +         + DNG 
Sbjct: 4   PIQLLSPEIINLIAAGEVIDSLAAVVRELLENAIDAQATRLTVSVF-PELWQVMVADNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR--PPQNNT 117
           GM+ + +    Q H TSKI   DD   I + GFRGEAL SI  V  LT+ SR     +N 
Sbjct: 63  GMSLDNLRHCAQAHHTSKIFDLDDLWKITSLGFRGEALFSIAQVGQLTIQSRDATNDSNG 122

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                    ++S      M PGTIV    LF T+P R   L +   +   I  ++  +++
Sbjct: 123 WLVNYNQQGEMSEESTAPMAPGTIVTASHLFGTMPVRRQGLPTFSQQLKAIQGIVENLSL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVE-LNEKSNEITLQG 235
            +P++++     K +   ++  +++    P+ + +V   D        +     +  ++ 
Sbjct: 183 CHPQITWQVHHNKKSWLSISPGKTSQHILPQLLKRVHFNDLQFLCETVITPSHEQAKIEM 242

Query: 236 YTGIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
             G+P        +   + +NGR V+   +  T+    + T+P GR+PV  L L I P +
Sbjct: 243 VLGLPDRTSRGRLDWLKIAVNGRVVRSPQLEQTMLAGLSRTLPKGRFPVGFLHLIIPPSE 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +D N HPAK+ I  ++    +  + + I KA+    I+ S                    
Sbjct: 303 IDWNRHPAKTEIYLKSLEFWQERVTEVIDKALKLSPITIS-------------------- 342

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                   T  Q +   +  + S N  + +   + S + + ++           A  Q++
Sbjct: 343 --------TGEQNQRVKKLLKASENKGVYNLGHSESNELELIQ---------LRAVGQVN 385

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           Q YI+++ + GL +V+QH AHER+++EK++ ++    +    +LT   +           
Sbjct: 386 QTYIVAEHSHGLWLVEQHIAHERILYEKLQDEWQLIPVQQAIILTQISLK---------- 435

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              E L R+G+  E FG N  A+R +P +L  +       D  D +I+ S    L+    
Sbjct: 436 -QVEQLQRIGLDIEPFGDNTWAVRNVPKLLENRE------DCPDALIELSLGGDLESAQV 488

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +    AC  ++R+G  ++  +M  +L   +K  N   C HGRP ++ L+ S + + F R
Sbjct: 489 AV----ACRSALRNGTVLELSQMQEILNNWKKTRNPRTCPHGRPIYLPLEESSLSRFFRR 544


>gi|170717827|ref|YP_001784888.1| DNA mismatch repair protein [Haemophilus somnus 2336]
 gi|189030401|sp|B0UUU5|MUTL_HAES2 RecName: Full=DNA mismatch repair protein mutL
 gi|168825956|gb|ACA31327.1| DNA mismatch repair protein MutL [Haemophilus somnus 2336]
          Length = 615

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/555 (28%), Positives = 262/555 (47%), Gaps = 33/555 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KELIENSLDA ++ ++  I  GG +  +I DNG
Sbjct: 1   MTIKILPPQLANQIAAGEVVERPASVVKELIENSLDAGATHIQIEIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  Q N  
Sbjct: 61  IGIAKDELHLALARHATSKIASLDDLEMILSLGFRGEALASISSVSRLTLTSRTAQQNEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +   P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETSITPASHPIGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P+V+FT +      ++     TN    +RI+ + G DF+ NA+ ++ K N++ L G+ 
Sbjct: 181 AKPQVAFTLTHNNKLIHRYKSAVTNEQKIKRIATICGNDFMQNALHIDWKHNDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R   +  Y +INGR V+DK I   IR AY+E +   +YP  VL ++++P +VDV
Sbjct: 241 IQPQFARHQNDLNYCYINGRMVKDKVITHAIRQAYSEYLSNEKYPAFVLFIDLNPNEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF    +I +FI Q +  A+  +  +      +   +   +          
Sbjct: 301 NVHPTKHEVRFHQARLIHDFIYQGMTNALTSEQTNIPIQSEQSNPTKVAEPQGIWNLTTH 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---------------VEESEAT 402
              +     + +F Q+ +              +  ++                  E +  
Sbjct: 361 NKGNRATAGKNIFAQQPKDYDKKSSQFKPHFAANYSEVTPKKAVQKAYAELLATHEEKTI 420

Query: 403 HYQLGIACAQIHQNYIISQTT--DGLVIVDQHAAHERLIFEKM------------RQDFN 448
                      +  +I  Q      L +++  A   +   +              R    
Sbjct: 421 ASSTLPHQFTHNATHISEQKNVLHALALIENKALLLQQNQQYFLLSIQALQHFNIRLQLQ 480

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG-PNAIAIREIPAILSKK 507
            + I  QTLL P ++ L + +     +      + G           I +  +P  L  +
Sbjct: 481 QSNIAQQTLLIPILLRLNKQQYQSWQQQALFFQQSGFDFTDNSAQRRITLNRLPICLRTQ 540

Query: 508 NIPQLLRDIIDEIID 522
           NI +++  ++D+  +
Sbjct: 541 NIQKIILQLLDQPHE 555


>gi|16329972|ref|NP_440700.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
 gi|1652458|dbj|BAA17380.1| DNA mismatch repair protein; MutL [Synechocystis sp. PCC 6803]
          Length = 563

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/604 (24%), Positives = 268/604 (44%), Gaps = 72/604 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++++ IAAGE+I+ P   ++EL+EN+LDA + R+   +    +   ++ DNG G
Sbjct: 9   IQVLDRQLVDLIAAGEVIDSPLAVVRELVENALDAGADRILVRVWWD-QWRLEVLDNGQG 67

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN-TGA 119
           M   E+  +V  H TSKIS   D   I T GFRGEAL S+  V+ LT+ SR   +   G 
Sbjct: 68  MDVTELKTSVLPHATSKISTQADLQRIKTLGFRGEALHSLAQVARLTISSRSVASPGCGW 127

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +I  S +     + PVA+  GT VEVR LF   P R       Q     +   ++++A+ 
Sbjct: 128 RITYSPQGSPEQIEPVAIAMGTRVEVRQLFANFPQRRQAFAKSQQFWRPMVTYLQQLALC 187

Query: 179 YPKVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIGEDFINNA------VELNEKSNEI 231
           +P+V++     +  R  ++          + +  +               V+L  ++   
Sbjct: 188 HPQVTWQLWQDERLRLSLSPGPNPEAILLQCLKSLQAGQLGYTQQSLSLPVDLENQATSA 247

Query: 232 TLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
            L    G P   +R   +   + INGR V    +  TI   +  T+P  RYP+     ++
Sbjct: 248 QLSLTFGYPDRCHRPRPDWLIIAINGRPVNVPELTQTILAVFHRTLPRQRYPLCFAHWQL 307

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
            P+ +D + HPAK+ I  ++    +  +   + +++   G                    
Sbjct: 308 PPQCIDWHRHPAKTEIYLQDLPHWQGQLKTLLHQSLAILGNDAP---------------- 351

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
                P+    L   + K   Q    S+                 + E+   + +   A 
Sbjct: 352 -----PRLNQLLKAAEPKGVYQLQGASS-----------------LTETVLGYPKAFKAI 389

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           AQ+ Q Y++ +   G+ +V+QH AHER++FE++++ +    +    +L            
Sbjct: 390 AQVCQTYVVVEHDQGIWLVEQHVAHERVLFEQLQRHWQCLPLEQPLVLQGFNP------- 442

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
               E  E L  LG++ + FG +  A+R +PA+L  +       +II  + + S  ++L 
Sbjct: 443 ----EQVERLQNLGLEIDPFGEDIWAVRSLPALLQGQE------EIIAILRELSQVFSLS 492

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                  A +AC  +I++G ++  I +N+L+ + ++  N   C HGRP ++ L  S + +
Sbjct: 493 T----AQAAIACRSAIKNGMELDRIAINKLIEQWQQCDNPHTCPHGRPIYLALDESSLAR 548

Query: 591 LFGR 594
            F R
Sbjct: 549 FFRR 552


>gi|20455503|sp|P73349|MUTL_SYNY3 RecName: Full=DNA mismatch repair protein mutL
          Length = 556

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/604 (24%), Positives = 268/604 (44%), Gaps = 72/604 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++++ IAAGE+I+ P   ++EL+EN+LDA + R+   +    +   ++ DNG G
Sbjct: 2   IQVLDRQLVDLIAAGEVIDSPLAVVRELVENALDAGADRILVRVWWD-QWRLEVLDNGQG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN-TGA 119
           M   E+  +V  H TSKIS   D   I T GFRGEAL S+  V+ LT+ SR   +   G 
Sbjct: 61  MDVTELKTSVLPHATSKISTQADLQRIKTLGFRGEALHSLAQVARLTISSRSVASPGCGW 120

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +I  S +     + PVA+  GT VEVR LF   P R       Q     +   ++++A+ 
Sbjct: 121 RITYSPQGSPEQIEPVAIAMGTRVEVRQLFANFPQRRQAFAKSQQFWRPMVTYLQQLALC 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIGEDFINNA------VELNEKSNEI 231
           +P+V++     +  R  ++          + +  +               V+L  ++   
Sbjct: 181 HPQVTWQLWQDERLRLSLSPGPNPEAILLQCLKSLQAGQLGYTQQSLSLPVDLENQATSA 240

Query: 232 TLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
            L    G P   +R   +   + INGR V    +  TI   +  T+P  RYP+     ++
Sbjct: 241 QLSLTFGYPDRCHRPRPDWLIIAINGRPVNVPELTQTILAVFHRTLPRQRYPLCFAHWQL 300

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
            P+ +D + HPAK+ I  ++    +  +   + +++   G                    
Sbjct: 301 PPQCIDWHRHPAKTEIYLQDLPHWQGQLKTLLHQSLAILGNDAP---------------- 344

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
                P+    L   + K   Q    S+                 + E+   + +   A 
Sbjct: 345 -----PRLNQLLKAAEPKGVYQLQGASS-----------------LTETVLGYPKAFKAI 382

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           AQ+ Q Y++ +   G+ +V+QH AHER++FE++++ +    +    +L            
Sbjct: 383 AQVCQTYVVVEHDQGIWLVEQHVAHERVLFEQLQRHWQCLPLEQPLVLQGFNP------- 435

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
               E  E L  LG++ + FG +  A+R +PA+L  +       +II  + + S  ++L 
Sbjct: 436 ----EQVERLQNLGLEIDPFGEDIWAVRSLPALLQGQE------EIIAILRELSQVFSLS 485

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                  A +AC  +I++G ++  I +N+L+ + ++  N   C HGRP ++ L  S + +
Sbjct: 486 T----AQAAIACRSAIKNGMELDRIAINKLIEQWQQCDNPHTCPHGRPIYLALDESSLAR 541

Query: 591 LFGR 594
            F R
Sbjct: 542 FFRR 545


>gi|261823153|ref|YP_003261259.1| DNA mismatch repair protein [Pectobacterium wasabiae WPP163]
 gi|261607166|gb|ACX89652.1| DNA mismatch repair protein MutL [Pectobacterium wasabiae WPP163]
          Length = 661

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 204/380 (53%), Gaps = 3/380 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIGKDELTLALARHATSKITTLDDLEAIVSMGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +         +  R+  + G  F+ +A+ ++ + +++T+ G+ 
Sbjct: 181 ARFDVAITLHHNGKLMRQYRAAPDKSQYERRLGTICGATFLQHALAVSWQHDDLTIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   +  Y ++N R ++D+ I   IR AY + +   + P  VL LEIDP QVDV
Sbjct: 241 ADPVGAKQLPDMQYCYVNQRMMRDRLINHAIRQAYQDQLRDDQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +     S +   +           +    +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMSVLQQASAPGSGMTESETEKPVQWQQENRPAAGE 360

Query: 358 YATSLTNTQEKLFLQENRLS 377
              +  +  EK    E +  
Sbjct: 361 NHFAQPSRTEKSSSAEGKTP 380


>gi|332290020|ref|YP_004420872.1| DNA mismatch repair protein [Gallibacterium anatis UMN179]
 gi|330432916|gb|AEC17975.1| DNA mismatch repair protein [Gallibacterium anatis UMN179]
          Length = 621

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/566 (28%), Positives = 272/566 (48%), Gaps = 44/566 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L   + NQIAAGE++ERP+  +KELIENSLDA + +++  I   G    +I DNG
Sbjct: 1   MPIQILPPLLANQIAAGEVVERPASVVKELIENSLDAGADKIQIDIEQSGSRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           +G+   EI +++ RH TSKI+  DD  NI + GFRGEAL SI +VS LTL SR  + N  
Sbjct: 61  YGIAKAEIQLSLVRHATSKIATLDDLENILSLGFRGEALASISSVSRLTLTSRTAEQNEA 120

Query: 119 AQIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G+++ +   P +   GT VEV +LFF  PAR  FL+S++ E   I +V++R+A+
Sbjct: 121 WQVYAQGQEMDTTIVPASHPVGTTVEVENLFFNTPARRKFLRSDKTEFAHIDEVVKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P V FT +      ++    +   +  +R++ + G DF  +A+ ++ +  E+ LQG+ 
Sbjct: 181 AKPTVHFTLTHNGKLIHQYKAANDTNSQLKRLAAICGNDFTEHALRIDWQYEEMHLQGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R   +  Y ++NGR ++DK IL  +R AYA+ +   +YP  VL L++DP  VDV
Sbjct: 241 AEPRFFRSQNDFNYSYVNGRMMKDKVILHAVRQAYADYLSPDQYPAFVLFLDLDPTLVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI-------NKKGISTSSVLSKKMISSFHQDNA 350
           NVHP K  +RF    ++ +FI+Q +  A+        +   ST  V ++K       +  
Sbjct: 301 NVHPTKHEVRFHQARLVHDFILQGVANALAQTSELFAQNDESTMIVEAEKSQHIAEPNAH 360

Query: 351 PKTHL-------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            +          P +  +     E +F   NR ++     +D   Y +    ++ + +  
Sbjct: 361 YQPTFNTNNAFPPAFKNNRQAAGENIFNANNRWASTSSSQNDKTAYRQYEKLLQSAHSDE 420

Query: 404 YQLGIACAQIHQNYI------------------------ISQTTDGLVIVDQHAAHERLI 439
                + +    N I                        + Q    L   +Q        
Sbjct: 421 QISSTSISNNRPNAIESTVIEPSSNLTEQNDERLKVLTLLPQGYLCLQQQEQLYLLSVQK 480

Query: 440 FEKMRQDFNSTKIT--SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
            +++       +     Q LL P    L   +     ++     + G + +R+    I I
Sbjct: 481 LQQLHCHLQLQQADKSMQALLIPTTFQLDNSQLDTFHQYQAFFSQAGFQIQRY-EQRITI 539

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDS 523
            ++   L ++N+ Q++  ++++ +D 
Sbjct: 540 TQVAMPLRQQNLQQIVMSLLNQTVDD 565


>gi|253690084|ref|YP_003019274.1| DNA mismatch repair protein MutL [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259511146|sp|C6DFJ9|MUTL_PECCP RecName: Full=DNA mismatch repair protein mutL
 gi|251756662|gb|ACT14738.1| DNA mismatch repair protein MutL [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 669

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/410 (30%), Positives = 206/410 (50%), Gaps = 6/410 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIGKDELTLALARHATSKIATLDDLEAIVSMGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +         +  R+  + G  F+ +A+ ++ +  ++T+ G+ 
Sbjct: 181 ARFDVAITLHHNGKLIRQYRAAPDKSQYERRLGNICGATFLQHALAVSWQHGDLTIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   +  Y ++N R ++D+ I   IR AY + +   + P  VL LEIDP QVDV
Sbjct: 241 ADPVGAKQLPDMQYCYVNQRMMRDRLINHAIRQAYQDQLSDDQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +   +++  L      +       + + P 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMSVLQQ---ASAPGLGMTSPETGKPVQWQQENRPA 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
              +      +     +                      +       + G
Sbjct: 358 AGENHFAQPPRTDNSPSYGGKTPRAGHSGQAKESAYSGYQPENPYQKKQG 407



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 73/211 (34%), Gaps = 23/211 (10%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           +  +         +   +           E+     G         Y + +   GL ++ 
Sbjct: 449 VSHDSPPNRTAPDATTSSSKPRAPIESPLESQSNGFGRVLTVYPPCYALLEYHKGLAMLS 508

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
              A   L   ++    +   + +Q LL P+ + L + E +++  H   L R GI     
Sbjct: 509 LSVAERHLKAVQL--TPSEEGLRAQPLLIPQRLTLSKSELSVLSAHHALLARFGIDVLVE 566

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
              A  +R +P  L ++N+  L+ ++I  + +  T  T Q     + + MA         
Sbjct: 567 SQRA-TLRAVPLPLRQQNLQNLISELIGYLANYQTVETQQVEPGELASWMA--------T 617

Query: 551 KM-------QSIEMNRLLREMEKNPNSSQCN 574
           ++          +  +LL ++E+      C 
Sbjct: 618 RLQSEQESWSHSQAIQLLADVERL-----CP 643


>gi|315178346|gb|ADT85260.1| DNA mismatch repair protein MutL [Vibrio furnissii NCTC 11218]
          Length = 649

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 162/580 (27%), Positives = 271/580 (46%), Gaps = 66/580 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGIDKDELGLALSRHATSKIHTLDDLEAIISLGFRGEALASISSVSRLTLTSRTATQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVQLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+F          +     T     +RI+ V G  F+ N +++      + L G+ 
Sbjct: 181 SRFDVTFNLRHNGKLVRQYRAAKTEIQLEKRIAAVCGSAFVRNMLKIELAHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT---- 353
           NVHPAK  +RF    ++ +FI Q++  A+ +     +   ++   S+FH  + P+     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALAESQHIDAPAHNE---SAFHYHDEPEQTSAI 357

Query: 354 ---------------------------------HLPKYATSLTNTQEKLFLQENRLSTND 380
                                              PK++  + ++  K    + R+S   
Sbjct: 358 SERVTQAVESTPAYPGRSDYERPAREATRDQVREAPKHSAWVESSPAKRKPAQERVSAPS 417

Query: 381 LLPSDDPTYS---------------------EDNDPVEESEATHYQLGIACAQIHQNYII 419
              ++   Y                       ++ P+E    T  QLG A A +   Y++
Sbjct: 418 PSQAEVRAYQALMKTPDVAVPTPAEHRPSTPSEHTPLEHETFTVQQLGKAIAVVRGCYLL 477

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
             T  G V++    A    +  ++  +     + SQ LL P  + +   E   + +    
Sbjct: 478 MNTPQGCVLLSLRVAAWLRVRGQL--NAQHEPLKSQPLLVPLSLKMSASEANALEQSQLL 535

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           L +LG++ +   P ++ +  +P  L ++N+  L+ D++  
Sbjct: 536 LTQLGLELKPRHPGSLMVMGVPQPLRQQNLQLLIPDLLSY 575


>gi|323491080|ref|ZP_08096271.1| DNA mismatch repair protein [Vibrio brasiliensis LMG 20546]
 gi|323314660|gb|EGA67733.1| DNA mismatch repair protein [Vibrio brasiliensis LMG 20546]
          Length = 649

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/655 (24%), Positives = 278/655 (42%), Gaps = 90/655 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP      
Sbjct: 61  KGIVKDELGLALSRHATSKIHTLDDLEAIISLGFRGEALASISSVARLTMTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLQPAAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ N +++  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKLVKQYRAAKTEAQAEKRIAAVCGNAFVRNMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---------------------TSSV 336
           NVHPAK  +RF    ++ +FI Q++  A+ +                          ++ 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALAQSAHIDKPQQTASAFHIEQPQVEDSHQATE 360

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL-------------------- 376
              +      Q+      +P Y         +  L+E++                     
Sbjct: 361 AVAEEPRVSRQEYQAIESVPSYPGKADYQASRESLRESKPRHEWQESRSDSKPRVTERYS 420

Query: 377 ----------STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
                     +  +LL + +   +     V         +     ++ +   + Q    L
Sbjct: 421 EPAPSKQEVKAYQELLKTPEFDSAPVEQQVANDTQAEPMVSERVERLGKAICVVQGRY-L 479

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL--- 483
           V+ D       +   K        ++ +          L+     L  E  E   +L   
Sbjct: 480 VMGD-KTGTRLVNLAKAEWLRIKGQLATHHGALKSQPLLVPLSLKLDPEPLEVAEKLEPV 538

Query: 484 ----GIKAERFGPNAIAIREIPAILSKKNIPQLLRDII----------DEIIDSSTTYTL 529
               GI+ +     A+ +  +P  L ++N+ QL+ D++          + + D   +  L
Sbjct: 539 LKMFGIELKSRANKALMVMGVPQPLRQQNLQQLVPDLLSYAASHMATSNSLSDPQLSTWL 598

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC--NHGRPTFIK 582
            DRI            ++S   +   E  +++ ++E+     Q     G  TF++
Sbjct: 599 SDRITQ----------VKSDYTLS--EAIQIIADLEQL---WQDRLPLGDATFVR 638


>gi|227326201|ref|ZP_03830225.1| DNA mismatch repair protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 670

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/406 (31%), Positives = 211/406 (51%), Gaps = 6/406 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIGKDELTLALARHATSKIATLDDLEAIVSMGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +         +  R+  + G  F+ +A+ ++ +  ++T+ G+ 
Sbjct: 181 ARFDVAITLHHNGKLMRQYRAAPDKSQYERRLGSICGATFLQHALAVSWQHGDLTIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   +  Y ++N R ++D+ I   IR AY + +   + P  VL LEIDP QVDV
Sbjct: 241 AEPVGAKQLPDMQYCYVNQRMMRDRLINHAIRQAYQDQLSDDQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +       +   +           +T   +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMSVLQQASSPALGMTEPETGKPVQWQQENRTAAGE 360

Query: 358 ---YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
                 S T++      +  R   +        +  +  +P ++ +
Sbjct: 361 NHFAQPSRTDSSPSYGGKTPRAGHSGSARESAYSGYQPENPYQKKQ 406


>gi|300774460|ref|ZP_07084323.1| DNA mismatch repair protein MutL [Chryseobacterium gleum ATCC
           35910]
 gi|300506275|gb|EFK37410.1| DNA mismatch repair protein MutL [Chryseobacterium gleum ATCC
           35910]
          Length = 597

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 141/602 (23%), Positives = 260/602 (43%), Gaps = 21/602 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + + NQIAAGE+++RP+  +KEL+EN++DA+++++E +I   GK+  Q+ D+G G
Sbjct: 5   IQLLPDHVANQIAAGEVVQRPASIVKELLENAIDADATKIELIIRDAGKNLIQVVDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI  ++D   I T GFRGEAL SI AVS + L ++    + G  
Sbjct: 65  MSETDARMAFERHATSKIKGTEDIFRIATKGFRGEALASIAAVSQVELRTKQKDTSIGTN 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G       PV    G+   V++LF+ +PAR  FLK+  +E   + D  +R+A+A+ 
Sbjct: 125 IYIEGGVFQFQDPVQTADGSNFLVKNLFYNVPARRKFLKNNNIEFRHVIDEFQRVALAHE 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F+        +++      G+  +RI  V G       + + E      L G+   P
Sbjct: 185 NLEFSLFHDDEAVFRLR----KGSQMQRIVDVFGRKLQPLLIPIKEDIIWCKLHGFVAKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +    + ++F+NGR  +  +    ++ A+   +  G  P   L LE+DP ++DVN+H
Sbjct: 241 EGAKKARGEQFLFVNGRYFRSPYFNKAVQEAFEGLLQPGYVPSFFLFLELDPEKIDVNIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---------SKKMISSFHQDNAP 351
           P K+ ++F +  +I   +  +I++++    +S S              K I S       
Sbjct: 301 PQKTEVKFEDEHLIFALLRSTIKRSLGIYNVSPSLDFDRDPELDEMMNKPIPSKSNSGGS 360

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT-HYQLGIAC 410
            + +      +         ++N +   ++    +  +        +             
Sbjct: 361 GSVIKMPEIIVDKDYNPFLEEKNVVHPEEIQNLTEMYHQNITAEPSKINLFEDEDFDEDL 420

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            ++   Y +    D  +++D    H  LI E  +    S+   S  LL      + E E 
Sbjct: 421 MRLPNGYWLFNKGDVTLMLDLGRMHRLLISESNKSVRKSSTN-SHALLFSLEYHMNEIEK 479

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
                  + L  LG   +    + + I  +P  L +    + L + + EI+D  T     
Sbjct: 480 TKYNAIKKYLPELGFDMKIAHESVLRIDSLPEGLKETQAMKFLEN-LFEILDYKTEEEFM 538

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
               N    M      R    +   +  +L+++            G+  F ++  +D + 
Sbjct: 539 QYYHNQWNKMQSKS--RF-DFIYKKDAEQLIKDFTALGFPEFLPDGKRCFYEVPFNDFKN 595

Query: 591 LF 592
            F
Sbjct: 596 KF 597


>gi|157373934|ref|YP_001472534.1| DNA mismatch repair protein MutL [Shewanella sediminis HAW-EB3]
 gi|189030416|sp|A8FRD3|MUTL_SHESH RecName: Full=DNA mismatch repair protein mutL
 gi|157316308|gb|ABV35406.1| DNA mismatch repair protein MutL [Shewanella sediminis HAW-EB3]
          Length = 624

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 163/590 (27%), Positives = 281/590 (47%), Gaps = 58/590 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MTIQILPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIEKGGSKLIKIHDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ E++ +A+ RH TSK+S  DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 61  SGISKEDLGLALSRHATSKLSSLDDLDAILSFGFRGEALASISSVSRLTLTSRTADQVEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ VE  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGSDMAVKVIPAAHPVGSTVEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT              +T   + +R++Q+ G+ F   A+E+N + +++ L GY 
Sbjct: 181 VRSDIHFTLKHNGKVVRNYRATNTQDQYLQRLAQISGKKFAEQAIEINCQHDDLKLTGYV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F    ++  Y ++NGR V+D+ +   +R A+AE    G     VL+LE+DP QVDV
Sbjct: 241 QSPFFETPASDTQYFYVNGRLVRDRLVNHAVRQAFAEH-ETGEQASYVLMLELDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I Q++Q A+++ G                           
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYIFQALQSALHQVGRLAIDSDNKLDTDSHSQSHERGHSAYG 359

Query: 331 --ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR--LSTNDLLPSDD 386
               + S       ++     + +T+  ++++ ++         ++R   +++    ++ 
Sbjct: 360 VAEPSHSRHDYSHQTAPSTKASTETNRERFSSPISAVPSHTSDVQSRGGATSSYRQQAEL 419

Query: 387 PTYSEDNDPVEESEATHYQLGI-----------ACAQIHQNYIISQTTDGLVIVDQHAAH 435
           P+ +      E  +      G                +   Y +    + L+++      
Sbjct: 420 PSAAAIASYAELLKTPDVDQGNRGNKELQANVSMPPILAGQYWVLTQEEQLLLLPVRIIS 479

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNA 494
             L+  ++    +S  + SQ LL P  I + E     + E +  L ++GI+   R G   
Sbjct: 480 TWLLQHEISNKLDS-GLVSQPLLMPVSISMDETWSDTLAERELLLRKIGIEVTIRLGQ-- 536

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY 543
           + I+++P  L +  +  ++ D++  +         ++     LA+ +A +
Sbjct: 537 LIIKKVPPYLRQSQLVAVIPDLLQWL-------RFEEPSNEALASWLAKH 579


>gi|56459442|ref|YP_154723.1| DNA mismatch repair enzyme, ATPase [Idiomarina loihiensis L2TR]
 gi|81821676|sp|Q5QW89|MUTL_IDILO RecName: Full=DNA mismatch repair protein mutL
 gi|56178452|gb|AAV81174.1| DNA mismatch repair enzyme, ATPase [Idiomarina loihiensis L2TR]
          Length = 577

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/539 (28%), Positives = 264/539 (48%), Gaps = 11/539 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L  ++ NQIAAGE++ERPS  +KEL+EN+LDA ++++   I  GG    +I DNG
Sbjct: 1   MAIQQLPIELANQIAAGEVVERPSSVVKELVENALDAGATQLILDIEQGGSKRIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD  +I + GFRGEAL SI +VS L L+S+PP+    
Sbjct: 61  GGIVKQELTLALSRHATSKIQSLDDLEHIGSLGFRGEALASISSVSRLRLISKPPEQEEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V P A   GT V+++DLFF  PAR  FL++E+ E + I +VI+R+A+
Sbjct: 121 WQAWAEGRDMQVTVEPAAHPDGTTVDIQDLFFNTPARRKFLRTEKTEFSHIDEVIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +  +V F  +    +        T     +R++++ G  F   A  ++    +  L G+ 
Sbjct: 181 SRFEVGFQLNHNGKSVRAFPSAQTEKQQLQRLAKICGGGFAEQASAIDAVDGDFHLSGWL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  + F+NGR ++DK +   +R AY + +P  R P  VL  E+   +VDV
Sbjct: 241 VPPEHCRHQGDIQHFFVNGRMMRDKLLSHAVRQAYEKYLPNERVPTFVLYFELPAEEVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF     + +FI+  I++A+N+     +    +  +S  H  ++ +     
Sbjct: 301 NVHPAKHEVRFHRQRQVHDFILTRIEQALNQLVAIENE---QPAMSHQHSYSSQERSSGA 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV---EESEATHYQLGIACAQIH 414
            +          FL E + S + L  +    +      +    E++    Q     +  +
Sbjct: 358 TSDPYRGASGASFLGERKASGSLLPNAARVPHGNAGAQLSTEPEAKLKAEQNWRVLSVFN 417

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + +    L  ++    H   + +K+ Q      +  Q LL P  + L         
Sbjct: 418 DVYALIRNEYSLAWLNLAKVHTECVSKKLTQQLQD-GLNGQPLLVPVAVSLANLPGPASQ 476

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
              + L++ G+  +     AI I ++P +L + N+     D++  + + + T  L   +
Sbjct: 477 WPQQQLNQCGVVYKIQREQAI-IEQMPEMLRQGNVVSGFTDLLTLLTEDAETDQLARWL 534


>gi|304414429|ref|ZP_07395698.1| DNA mismatch repair protein [Candidatus Regiella insecticola LSR1]
 gi|304283214|gb|EFL91614.1| DNA mismatch repair protein [Candidatus Regiella insecticola LSR1]
          Length = 616

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/601 (25%), Positives = 265/601 (44%), Gaps = 40/601 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  +I NQIAAGE++ERP+  +KEL+ENSLDA +  ++  I GGG    +I DNG
Sbjct: 3   MLIKMLPPQITNQIAAGEVVERPASVVKELLENSLDAGAKWIDINIKGGGSKLIRIQDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++P+A+ RH TSKIS  DD   I + GFRGEAL SI +VS L L SR  +    
Sbjct: 63  TGIAKDDLPLALARHATSKISALDDLMTIRSMGFRGEALASISSVSRLLLTSRTVEQTEA 122

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   ++P A   G+ +EV D  F I  R+  L   + E   I +V+RR+A+
Sbjct: 123 WQSYAEGRDMLVKIKPAAHPVGSTLEVFDFIFIIRPRVASLCVRKTEFAHIDEVVRRIAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+      +    +    S    + +R++ V G  F+ + + ++ +  ++ + G+ 
Sbjct: 183 ARFDVTIHLHHNEKLIRQYRAVSDPTRYSQRLASVCGNVFLQHMLAISWQHEDLAIHGWL 242

Query: 238 GIPTFNRGNANQ---FYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
             P       +     Y ++N R ++D+ I   IR AY      G+    VL L I+P Q
Sbjct: 243 ADPQMLHNARSLNEIQYCYVNNRVIRDRLINHAIRQAYQGLSKDGQQIAYVLYLTIEPSQ 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VD+NVHPAK  +RF    ++ +FI Q++  A+  KG+  +S+  +   +     +     
Sbjct: 303 VDINVHPAKHEVRFHQARLVHDFIYQAVTMALQDKGLQPASIPVENGDTESKSPHRQPET 362

Query: 355 LPKYATSLTNTQEKLFLQENRL-------------------STNDLLPSDDPTYSEDNDP 395
                 +      K   Q N                     ST     +     S     
Sbjct: 363 RVAAGINKYAPPSKPCRQYNAANSPRGYLSRQGELYGQLLQSTTPSNTATVKDKSPQAAC 422

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
              +       G         Y + +  D  + +   +  ER   ++ +       + +Q
Sbjct: 423 SPLNGHDSNSFGSVLGIFPPCYALIKRGDEKIALLALSVAERC-LKQAQLTPPREGLRAQ 481

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P  ++L + E      H + L  +GI+   F  N   +R +   L ++N+ +L+ +
Sbjct: 482 PLLIPLKLNLDKAEITAGKYHKDLLSTMGIEL-LFEQNRATLRTVSLPLRQQNLQKLIPE 540

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACY-GSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++  +             E + A +A + GS     +    +  +LL ++E+      C 
Sbjct: 541 LLSYLSQHEKIAP-----EKLAAWIAQHLGS--EHEQWSVSQAIQLLTDVERL-----CP 588

Query: 575 H 575
           H
Sbjct: 589 H 589


>gi|71280731|ref|YP_267089.1| DNA mismatch repair protein MutL [Colwellia psychrerythraea 34H]
 gi|123733831|sp|Q48A24|MUTL_COLP3 RecName: Full=DNA mismatch repair protein mutL
 gi|71146471|gb|AAZ26944.1| DNA mismatch repair protein MutL [Colwellia psychrerythraea 34H]
          Length = 652

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/573 (29%), Positives = 271/573 (47%), Gaps = 63/573 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  IKELIENSLDA ++ +   +  GG    +ITDNG
Sbjct: 1   MTIAILPARLANQIAAGEVVERPASVIKELIENSLDAGATSIHIDVDKGGIKKIKITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI    D   I + GFRGEAL SI +V+ LTL S+P    T 
Sbjct: 61  HGIVKEELTLALSRHATSKIKSLNDLEAIGSLGFRGEALASISSVARLTLTSKPQSQATA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +S +++P A   GT +EV DLFF  PAR  FL++E+ E N I +V+RR+A+
Sbjct: 121 WQAVAEGRDMSVNIKPAAHPDGTSIEVLDLFFNTPARRKFLRTEKTEFNHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+ +VSF+ +   +   +    ST+    +R++ V G  FI +AVE++   + +TL G+ 
Sbjct: 181 AHFEVSFSLTHNGNTVRQYRMASTHAQCIKRVAMVCGPKFIEHAVEVDCPHDNMTLSGWL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+F+R   +  Y ++NGR ++DK I   IR AYA+ +P   YP  VL L++D R+VDV
Sbjct: 241 AKPSFSRSQNDLCYSYVNGRMMRDKLINHAIRQAYADLLPPDTYPAFVLFLQLDHREVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-----------------KGISTSSVLSKK 340
           NVHP+K  +RF     + +FI     KA+                       + S L   
Sbjct: 301 NVHPSKHEVRFHQSRYVHDFIYSVCHKALTSALAGEELFTTADSDLALVPEQSYSSLGAN 360

Query: 341 MISSFHQDNAPKTHLPKYA--------------------------------TSLTNTQEK 368
                H  N P  + P                                   + +  +  +
Sbjct: 361 DRQGSHSSNTPTLNYPSADYIRPLQHVNDASNSQSTSSYSGYGQQHKTNAISKIAASNYQ 420

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
             +  ++ S+  +  +     +        +           +     Y + +T +G+ +
Sbjct: 421 ALMTPDKGSSAQVQNTSGSDQASAQKHETTTLQNSTDQSAFLSVHQPGYALYKTENGVRV 480

Query: 429 VDQHAAHERLIFEKMRQDFNSTK----------ITSQTLLTPEIIDLLEGECALIMEHDE 478
           +       +  + K+ +     K          + SQ LL P I+ L E + + ++   E
Sbjct: 481 LSLFKLA-KSTYGKLVEQSWQNKTEQSDCPVECLVSQPLLLPVILSLSEQQLSFVLAEQE 539

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
            L   GI   +   N I IR+ PA+L ++++  
Sbjct: 540 ILSNAGIVFIQQHKNKIQIRQFPALLREQDVSN 572


>gi|227115182|ref|ZP_03828838.1| DNA mismatch repair protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 669

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/406 (31%), Positives = 211/406 (51%), Gaps = 6/406 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIGKDELTLALARHATSKIATLDDLEAIVSMGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFTHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+ T         +         +  R+  + G  F+ +A+ ++ +  ++T+ G+ 
Sbjct: 181 ARFDVAITLHHNGKLIRQYRAAPDKNQYERRLGSICGATFLQHALVVSWQHGDLTIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   +  Y ++N R ++D+ I   IR AY + +   + P  VL LEIDP QVDV
Sbjct: 241 ADPVGAKQLPDMQYCYVNQRMMRDRLINHAIRQAYQDQLSDEQQPAYVLYLEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +       +   +           +T   +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVMSVLQQASSPALGITEPETGKPVQWQQENRTAAGE 360

Query: 358 ---YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
                 S T++      +  R   +        +  +  +P ++ +
Sbjct: 361 NHFAQPSRTDSSPSYGGKTPRAGHSGQAKESAYSGYQPANPYQKKQ 406


>gi|59712932|ref|YP_205708.1| DNA mismatch repair protein [Vibrio fischeri ES114]
 gi|71648717|sp|Q5E2C6|MUTL_VIBF1 RecName: Full=DNA mismatch repair protein mutL
 gi|59481033|gb|AAW86820.1| methyl-directed mismatch repair protein [Vibrio fischeri ES114]
          Length = 660

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/491 (26%), Positives = 231/491 (47%), Gaps = 16/491 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIEKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIPKDELTLALSRHATSKITSLDDLEAIVSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G +++   +P A   GT ++V DLFF  PAR  FL++++ E   I ++++R+A+
Sbjct: 121 WSAYAEGREMNVKLKPAAHPIGTTIDVVDLFFNTPARRKFLRADKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +R++ V G +F+ +A+E+  +  E+   G+ 
Sbjct: 181 SRLDVTINLRHNGKMVRQYRAAQTKPQIEKRLAAVCGANFLQHALEVELEHGELKFHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   IR  Y  ++P  +Y   +L +EI+P  VDV
Sbjct: 241 SSPEGARAQGDIQYCYVNGRMMKDKLINHAIRQGYESSLPANQYAAYILFIEINPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q+I  A+ +       V   +  +   Q  + +++ P 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAIFGALQQGASLPDVVGHIQSEAEEQQLESKESYFPP 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
               +   Q+  + +  +L          P  +  +  + +              +  + 
Sbjct: 361 MKEYVRQPQQTHYPKSEQLRAAVESTPSYPNKAPLDSWIPK------------GNVGSSS 408

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL-LEGECALIMEH 476
             S         D+        + ++    N  +  S + +  +        +   +   
Sbjct: 409 SNSTAPSRSFHTDKPTKKALSNYNELLTTQNREQRESTSQVNEQSHTFRSTQQIERVAPQ 468

Query: 477 DEDLHRLGIKA 487
              + + GI  
Sbjct: 469 VTQVSKNGITL 479


>gi|163749345|ref|ZP_02156594.1| DNA mismatch repair protein MutL [Shewanella benthica KT99]
 gi|161331064|gb|EDQ01990.1| DNA mismatch repair protein MutL [Shewanella benthica KT99]
          Length = 616

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/585 (28%), Positives = 272/585 (46%), Gaps = 52/585 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I D+G
Sbjct: 1   MTIQILPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIEKGGSKLIKIHDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+S  DD   I +FGFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  TGIPKEELSLALSRHATSKLSTLDDLDAILSFGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ VE  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGSDMAVKVIPAAHPVGSTVEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT               T+  + +R++ + G+ F   A+E+  +   + L GY 
Sbjct: 181 VRGDIHFTLKNNGKVVRNYRPAKTSDQYLQRLALISGKKFAQQALEVKCEHEGLNLSGYI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F    ++  Y ++NGR V+D+ +   +R A+AE +  G     VL+LE+DP QVDV
Sbjct: 241 QPPYFEGPASDTQYFYVNGRQVRDRLVNHAVRQAFAEHV-TGAQASYVLMLELDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS------------- 344
           NVHPAK  +RF     + +FI+Q++Q A+++ G   S+       +S             
Sbjct: 300 NVHPAKHEVRFHQSRYVHDFILQALQSALSQVGSPVSTEDQNNREASSSSYQAGVQESQR 359

Query: 345 FHQDNAPKTHLP----------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
             + +    HLP                   +    +  K  L+ +  +   +       
Sbjct: 360 VKEPDGRAVHLPVDKGPGTSPVGTQHEYSITSPSPYSGNKSALRPSSTARPQVELPSAAA 419

Query: 389 YSEDNDPVEESEATHYQLGIACAQ-------IHQNYIISQTTDGLVIVDQHAAHERLIFE 441
            +     +               +       +   Y +    D L ++   A   RL+  
Sbjct: 420 IASYGALLTTPVVPSLGRSELVNEQPSMPPLLDARYWVLTQGDKLTLLPIEAIASRLLQI 479

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNAIAIREI 500
            +    +   + SQ LL P  I + +     I   +  L ++GI+   R G   + I+++
Sbjct: 480 SIFAKLD-GGLISQPLLMPVSIPMDDDWKETIELRELVLRKIGIELSIRLGQ--LIIKKV 536

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACYG 544
           P  L +  +  ++ +++  I         ++  +  LA+ +A +G
Sbjct: 537 PPYLRQSQLVSVIPELLQWI-------RFEEPAQEALASWIAKHG 574


>gi|319775010|ref|YP_004137498.1| DNA mismatch repair protein MutL [Haemophilus influenzae F3047]
 gi|317449601|emb|CBY85806.1| DNA mismatch repair protein MutL [Haemophilus influenzae F3047]
          Length = 445

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 140/418 (33%), Positives = 226/418 (54%), Gaps = 10/418 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKIADLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E   I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ +  K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEAINQQLKRVAAICGDDFVKNALRIEWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDVYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + I  A+N +      +  S +  +  ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGISHALNNQEQLNWHTDQSAVENREENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLF---LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
             P  A +  N+    +    Q+N+   ++     +   +   D   ++ +   Q   
Sbjct: 361 IRPNRAAAGQNSFAPKYHEKSQQNQPHFSNTPVFPNHVSTGYRDYRSDAPSKTEQRLY 418


>gi|223041566|ref|ZP_03611767.1| DNA mismatch repair protein [Actinobacillus minor 202]
 gi|198246539|gb|ACH82229.1| DNA mismatch repair protein [Actinobacillus minor 202]
          Length = 646

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 155/565 (27%), Positives = 268/565 (47%), Gaps = 67/565 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++   I  GG    +I DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIHIEIEKGGAQLIKIRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKI+  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 66  IAKQDLALALARHATSKIATLEDLECILSLGFRGEALASISSVSRLTLTSRPEGQAEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G +++  ++P +   GT V V +LFF  PAR  FL++++ E   I +VIRR+A+A 
Sbjct: 126 AYAQGREMTVEIQPASHPVGTTVSVANLFFNTPARRKFLRTDKTEFQHIDEVIRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V+F  S       +      ++     +R++ + G+ FI  A  ++ +  ++ L G+ 
Sbjct: 186 PHVTFILSHNGKVVRQYRKVLDNSVEQQQKRVAAICGDAFIQQATHIDWQHGDLHLHGWI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT  R   +  Y ++NGR ++DK I   IR AY ++I  G YP  V+ L++DP  VDV
Sbjct: 246 GMPTLARTQNDLCYSYVNGRMMRDKTINHAIRQAYGDSIAQGDYPAFVIFLDLDPSHVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-----SSVLSKKMISSFHQDNA-- 350
           NVHPAK  +RF    ++ +FI+Q + +A+ ++          +    + + S+ QD    
Sbjct: 306 NVHPAKHEVRFHQGRLVHDFILQGVHQALQQQAPLALTLENRADEIHEAVPSYSQDTNRA 365

Query: 351 -----------------------------PKTHLPKYATSLTNT------------QEKL 369
                                          +H+P  ++S +              +E+ 
Sbjct: 366 AAGENIFAGQLTSSTKYHGHSVGNGGRTTFSSHIPTKSSSPSAQRWYNELITTEKREEED 425

Query: 370 FLQENRLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTD 424
           F Q   +   D    ++      +         E+ +  +      A + Q   + +  +
Sbjct: 426 FHQPTAIFYQDTAKQEESERLSTHVERTLPLNSETLSVPHSHATVLAIVQQQAALLKEHE 485

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
              ++      +    E+++         SQ+LL P  + L E + A+  +  E+L + G
Sbjct: 486 SFFLLPLAKLGQWHWLERLK------SGESQSLLIPLTLTLEEEQSAVWFQLKEELEKWG 539

Query: 485 IKAER---FGPNAIAIREIPAILSK 506
            +       G   +++  +P  L +
Sbjct: 540 FQISEKNWQGKVRLSMSAVPKGLRE 564


>gi|294634451|ref|ZP_06712987.1| DNA mismatch repair protein MutL [Edwardsiella tarda ATCC 23685]
 gi|291092161|gb|EFE24722.1| DNA mismatch repair protein MutL [Edwardsiella tarda ATCC 23685]
          Length = 649

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/578 (26%), Positives = 265/578 (45%), Gaps = 59/578 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LT+ SRP +    
Sbjct: 61  GGIGKAELALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLTMTSRPAEQAEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++   +P A   GT VEV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTVEVLDLFYNTPARRKFLRTEKTEFAHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++ +         +            R++ + G  FI +A+ +  + +++++ G+ 
Sbjct: 181 ARFDITLSLQHNGKTVRQYRAVREGEAHERRLAAICGAPFIQHALAVTWRHDDLSIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++NGR ++D+ I   IR AY + +     P  VL LEIDPRQVDV
Sbjct: 241 AAPQGMRQIGELQYCYVNGRMMRDRLITHAIRQAYQDRLNDEHQPAYVLYLEIDPRQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSI------------------QKAINKKGISTSSVLSK 339
           NVHPAK  +RF    ++ +FI Q++                  +  + +   +    L  
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVVEVLQQASPTALTAAPAAEPTLREAEPAPRRALEN 360

Query: 340 KMISSFHQDNAPKTHLP------------------------------------KYATSLT 363
           +  +  ++   P T  P                                    +   +  
Sbjct: 361 RASAGENRFTRPTTEAPLAPAHAVTRGGATPRLPAGEIFRRREGELYQRLLAAERGPASR 420

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTT 423
             +          S+     +D    +      + SE T   LG       +   ++++ 
Sbjct: 421 AQEAAAASSPVLTSSPTPASADASPVAPSLCVADRSEMTTETLGRVLTLCAEGIALTESR 480

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            G+ +++       L+  ++    +   + +Q LL P  + L E E   +      L +L
Sbjct: 481 SGVALLNLDYGRRCLLRVQLLPAADE-ALKAQPLLIPVRLTLEEAERCALQAQAGLLQQL 539

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           GI+      +A+ +  +P  L ++N+P+L+  ++  + 
Sbjct: 540 GIQLTLERQHAL-LHAVPLPLRQQNLPRLIPQLLGYLA 576


>gi|260774634|ref|ZP_05883541.1| DNA mismatch repair protein MutL [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609424|gb|EEX35569.1| DNA mismatch repair protein MutL [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 658

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/607 (25%), Positives = 264/607 (43%), Gaps = 73/607 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGTKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LTL SRP   +  
Sbjct: 61  KGIAKDELGLALSRHATSKIHSLDDLEAIMSLGFRGEALASISSVARLTLTSRPATQDQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G ++    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGREMQVKLQPTAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ N +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIKQYRAAKTQVQEEKRIAAVCGNPFVRNMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +EIDP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPEQFATYVLFIEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTI----IRNFIIQSIQKA--INKKGISTSSVLSKKMISSFHQDNAP 351
           NVHPAK  +RF    +    I   +  ++ ++  I+K  I+ S+  ++ +          
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALVQSAQIDKPDINASAFHTEPVTPEIPTPVTA 360

Query: 352 KTHLPKYA-----------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED-------- 392
            T+    +                 +EK   ++ R    +     D   S          
Sbjct: 361 DTNPVSESVYRAVEKVPAYPGQQGYEEKRQAEKERTQVREAAAKSDWVESRPVPRQKAKP 420

Query: 393 ----------------------------------------NDPVEESEATHYQLGIACAQ 412
                                                      + E       LG A   
Sbjct: 421 EERYGEPAPSKQEVRAYKELLETPVLSQEAPPIPSELEPVTSALAEPAEAIEALGKAVCV 480

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
               Y++     G  +V    A    +  ++    N   + SQ LL P  + L   +   
Sbjct: 481 TQGQYLLMGDKQGARVVSMAKAEWLRVNGQL--SLNGGALKSQPLLVPLSLKLDHQQIEA 538

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE---IIDSSTTYTL 529
             +H   L + GI+ +    +++ I  +P  L ++N+ QL+ D++     I ++      
Sbjct: 539 SQQHHATLMQFGIELKSRNSSSLMIMGVPQPLRQQNLQQLIPDLLSYAALISENDQALPP 598

Query: 530 QDRIENI 536
           Q   + +
Sbjct: 599 QALSDWL 605


>gi|319896480|ref|YP_004134673.1| DNA mismatch repair protein mutl [Haemophilus influenzae F3031]
 gi|317431982|emb|CBY80330.1| DNA mismatch repair protein MutL [Haemophilus influenzae F3031]
          Length = 445

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 227/418 (54%), Gaps = 10/418 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG +  +I DNG
Sbjct: 1   MPIKILSPQLANQIAAGEVVERPASVVKELVENSLDAGANKIQIDIENGGANLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIPKEELSLALARHATSKITDLDDLEAILSLGFRGEALASISSVSRLTLTSRTEEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  + +  +P +   GT VEV +LFF  PAR  FL++++ E + I +VIRR+A+
Sbjct: 121 WQVYAQGRDMETTIKPASHPVGTTVEVANLFFNTPARRKFLRTDKTEFSHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                +FT +       +           +R++ + G+DF+ NA+ ++ K +++ L G+ 
Sbjct: 181 TKFNTAFTLTHNGKIIRQYRPAEELTQQLKRVAAICGDDFVKNALRIDWKHDDLHLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VDV
Sbjct: 241 ATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAKYLPTDVYPAFVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK----GISTSSVLSKKMISSFHQDNAPKT 353
           NVHP K  +RF    +I +FI + +  A+N +      +  S +     ++  +     +
Sbjct: 301 NVHPTKHEVRFHQQRLIHDFIYEGVSHALNNQEQLNWHTDQSAVENHEENTVREPQPNYS 360

Query: 354 HLPKYATSLTNTQEKLF---LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
             P  A +  N+    +    Q+N+   ++     +   +   D   ++ +   Q   
Sbjct: 361 IRPNRAAAGQNSFAPQYHEKPQQNQPHFSNTPVLPNHVSTGYRDYRSDAPSKTEQRLY 418


>gi|294139254|ref|YP_003555232.1| DNA mismatch repair protein MutL [Shewanella violacea DSS12]
 gi|293325723|dbj|BAJ00454.1| DNA mismatch repair protein MutL [Shewanella violacea DSS12]
          Length = 619

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/584 (28%), Positives = 266/584 (45%), Gaps = 49/584 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MTIQILPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIEKGGSKLIKIHDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+S  DD   I +FGFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIPKEELSLALSRHATSKLSSLDDLDAILSFGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++    P A   G+ VE  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGSDMAVKVIPAAHPVGSTVEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT               T+  + +R++QV G+ F   A+ +  +   + L GY 
Sbjct: 181 VSRDIHFTLKNNGKVVRNFRPAKTSDQYLQRLAQVSGKKFALQALAVECEHEGLKLSGYI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F    ++  Y ++NGR V+D+ +   +R A+AE +  G     VL+LE+DP QVDV
Sbjct: 241 QSPYFEGSASDTQYFYVNGRLVRDRLVNHAVRQAFAEHV-TGAQASYVLMLELDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLP 356
           NVHPAK  +RF     + ++I Q++Q A+++ G        +    +S +   A     P
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYIFQALQSALSQVGKPVFLAEDQSNKEASSNSYQASVLESP 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES----------------- 399
           +   S  +T    F +E   S            S      +                   
Sbjct: 360 RVNESDASTGYLPFNKEPDTSQARAKHEHSIASSAYYPGSKSGLSPSSAARPQVELPSVA 419

Query: 400 ---------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH------ERLIFEKMR 444
                            +   Q+     +    DG   V   A        E +  + ++
Sbjct: 420 AIASYGALLTTPVVPPQVGNGQVRDPQDMPPVLDGKYWVLTQADSLTLLTIENVASKLLQ 479

Query: 445 QDFNST---KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNAIAIREI 500
               +     + SQ LL P  I + +     I   +  L ++GI+   R G   + I+++
Sbjct: 480 VSILAKLECGLVSQPLLMPVSIPMDDDWQVTIEHRELMLRKMGIELTIRLGQ--LIIKKV 537

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           P  L +  +  ++ +++  +            +E + + +A +G
Sbjct: 538 PPYLRQSQLVSVIPELLQWMRFEEPG------LEALASWVAKHG 575


>gi|94264331|ref|ZP_01288123.1| DNA mismatch repair protein:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
 gi|93455225|gb|EAT05438.1| DNA mismatch repair protein:ATP-binding region, ATPase-like [delta
           proteobacterium MLMS-1]
          Length = 670

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/677 (24%), Positives = 293/677 (43%), Gaps = 95/677 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E + NQIAAGE++ERP+  +KEL+EN++DA +  V   +AG      ++      
Sbjct: 4   IRILPENLANQIAAGEVVERPASVVKELLENAVDAGAGNVTVQVAGNATGLIRV------ 57

Query: 63  M------TSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
           +        +++ ++++RH TSK+SD      I T GFRGEA+ SI +VS L L SRP  
Sbjct: 58  IDDGHGMDGDDLLLSLERHATSKLSDQASLHAIRTLGFRGEAMGSIASVSRLRLTSRPTG 117

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
              GA + ++   +  V       GT VEVRDLF  +PAR  FLKS + E   + + IR 
Sbjct: 118 AELGAMVEVAYGTVRKVSEAGAPVGTTVEVRDLFGNVPARRKFLKSARTELYHVEECIRN 177

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE------------------- 215
            A+A+P +   +     + ++        +   R++++                      
Sbjct: 178 CALAFPYLGVDYQVNGRSAWQWPA--GVDDLAGRLARLFPRGEVGELLRVAGGELAEQLL 235

Query: 216 ------DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
                 + + + + + ++     + G   +P        +  + +NGR V+D+ +   + 
Sbjct: 236 AAGRPLELLAHHLAVGDQPPAPVVAGLLPLPEAMLATGGKLRMLVNGRPVRDRLLGQAVG 295

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            A    +  GR P   L + IDP  VDVNVHP K  IRFR    ++  + +++  A+   
Sbjct: 296 EALRNELARGRRPAGALFIGIDPTLVDVNVHPTKQEIRFRAQAGVQEAVRRAVTAALKTH 355

Query: 330 GISTSSVLSKK--------------------------------------MISSFHQDNAP 351
                     +                                            +D  P
Sbjct: 356 ERQRRDAFFGQPAAAQAAATSRRPPAAEQAPRQEKVTDSGLVTGPSATTAADDPGKDRRP 415

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA-- 409
                        T E   + E R  T     ++ PT +     + E      +      
Sbjct: 416 PPTQAAGEADAQPTGEATVVGEQRRPTPVAEFAESPTVTSPAPSLAEKGERWSEEAACPT 475

Query: 410 -----------CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                        Q+ ++YI  ++   L+ VDQHAAHERL+FEK+R+ +    +  Q LL
Sbjct: 476 PAMVDESRPRLVGQVLKSYIFCESGGALLAVDQHAAHERLLFEKLRRQYQQQGLARQGLL 535

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P +++L   E  ++    E++ RLG++   FG  +  ++ +PA+L+     +++  ++ 
Sbjct: 536 FPAVLELGPAEATVLERRAEEISRLGLEVAAFGGYSYLVKAVPALLAGAAPAEIVAGVLA 595

Query: 519 -EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             + +          +E +LA MAC  +I++G++++  EM  LL EM++    S+C HGR
Sbjct: 596 PWLAEGGRAGAAT--LEAVLAQMACKAAIKAGQRLEPAEMEGLLAEMQQAGLFSRCPHGR 653

Query: 578 PTFIKLKLSDIEKLFGR 594
           P   +    ++EK F R
Sbjct: 654 PVVRRFAPGELEKWFHR 670


>gi|294102016|ref|YP_003553874.1| DNA mismatch repair protein domain protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616996|gb|ADE57150.1| DNA mismatch repair protein domain protein [Aminobacterium
           colombiense DSM 12261]
          Length = 573

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/598 (28%), Positives = 270/598 (45%), Gaps = 31/598 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL  ++  +IAAGE++ERP   +KE +ENSLDA SSR+   +  GGKS   + DNG
Sbjct: 1   MAILKLPREVALKIAAGEVVERPVSVVKEALENSLDAHSSRILVTLTEGGKSSIVVEDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+P+ + R+ TSKI+  +D SNI T G+RGEA+ SI AVS + L S+      G
Sbjct: 61  NGILWQEMPLVITRYATSKIATVNDLSNIKTLGYRGEAIASIAAVSRIDLRSKAKGAAEG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +   G  I     +    GT ++V DLFF  PAR  FL+S   E   I+ ++R    A
Sbjct: 121 GLLKAEGGSIVCHEQLPWKEGTRLQVDDLFFNFPARKKFLRSNLSELRKISALMRDFGAA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           YP V F+     +  ++       G+    +  + G      +  ++  S ++    +  
Sbjct: 181 YPAVLFSLYHNGNKIFETQ---GTGDRAAVLRSLWGASPETRSTTVSCGSIKLECW-WQS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P       N    F+NGR V D  I      A  +    G +        + P  VDVN
Sbjct: 237 TP---GRQKNIITSFVNGRIVSDPLIRGAASAACKDF--SGNWMFF---FTLPPELVDVN 288

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPK 357
           +HPAK+ +RFR P  I   +  +     N+    +     + K +  F   +  +  LP+
Sbjct: 289 IHPAKAEVRFRYPAEIFEAVKAASLDLQNRPTRLSFPSFWEGKELKEFVAPHLHRQALPQ 348

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
                    + LF   +R+S+ +LL         +       E+         AQ+   Y
Sbjct: 349 REEG-----QDLF---SRVSSPELLEEVKIESWGEKSVFSPDESKI----FFIAQMAAGY 396

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           ++ +    L+I+D HAAHER+ +EK+     S +  SQ L  P +  +     + + E+ 
Sbjct: 397 LLFEKNGQLIIMDPHAAHERIEYEKVLSRMKSEQFPSQKLNPPLL--IPPTLASEVEEYG 454

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAI-LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            +L + G   E     +  +   PA+ +  +  P  L        + + +  + D I   
Sbjct: 455 VELEKAGFIFEIEEGQS-MLSASPALPIEGREGPLFLLRTAILTWNETGSRAMDDVIWKK 513

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AT+AC  +++      + E   L   ++   N S C HGRPT + L   +IE+ FGR
Sbjct: 514 WATIACKRAVKLTTHCNAAEALHLYAALQFCENPSVCPHGRPTTLVLDKYEIEQFFGR 571


>gi|268611652|ref|ZP_06145379.1| DNA mismatch repair protein MutL [Ruminococcus flavefaciens FD-1]
          Length = 677

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/677 (21%), Positives = 282/677 (41%), Gaps = 87/677 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  LS++I   IAAGE+IERPS  IKEL+ENS+D+ +  +   I  GG ++ ++TD+G 
Sbjct: 3   PINILSKEISELIAAGEVIERPSSVIKELVENSIDSGARHITVEIKNGGTTYMRVTDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  ++P A  RH TSKI+  +D  NI T GFRGEAL S+ AV+ + ++++  ++  G 
Sbjct: 63  GMSFGDVPKAFLRHATSKITAKEDLDNILTLGFRGEALASVAAVARVEVLTKQREDALGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
             AI G +  +        GT + +RDLF+ +PAR  F+K +  E N ++++++++ +++
Sbjct: 123 LYAIEGSEEKAHEESGCPDGTTIIIRDLFYNVPARQKFMKKDVTEANAVSNILQKITMSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F         +     S +G     +  V G DF  + +E++ +   I + GY   
Sbjct: 183 PDVAFKLIRDNRVEFN---SSGDGELFSAVYAVYGRDFARDLMEVDYEYEGIHVGGYVIK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P +++ N      F+NGR V+ K   S +  AY   +  G++P  VL++++ P  +DVN+
Sbjct: 240 PLYSKNNRAFQNFFVNGRYVRSKLCSSALENAYTNMMMTGKFPACVLMIDLPPVAMDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI----SSFHQDNAPKTHL 355
           HP K+ +RF N   + + +  +++ A+ K G+     L  +           +   +  +
Sbjct: 300 HPTKAEVRFTNERNVSDAVYFAVKNAMMKDGLIYEFELKPRTDWTKKEPEPVEMKQQEFM 359

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
               + +  T+ ++  ++  +        D P  + D +   E             +  +
Sbjct: 360 FTPVSQIAETERRMAEEKPAVQPVQEKEEDIPLETADIEVCPEYSKPEPVAAPVQTEQAR 419

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             + S   + +  V Q A       E   +      I   + +          +     E
Sbjct: 420 PVVQSAPAEPVRPVVQSAPEPVKEPEPPVEKPEPAPIEGFSYINTSSFAGAPVKQETAPE 479

Query: 476 HDEDL-----------HRLGI-KAERFGPNAIA--------------------------- 496
            ++ +              G+      G N +                            
Sbjct: 480 PEQSVWTEKPKIRVIGEAFGLYVIAEVGDNTVIMIDKHAAHERIIFERLKSRNCRQYSQK 539

Query: 497 -IREIPAILSKKNIPQLLR--DIIDEI---IDSSTTYT--------------LQDRIENI 536
            +  I  +++   +  L    +++ ++    D S +                ++D I  I
Sbjct: 540 LLTGIKVLMTGDEVSALQENTELLADLGFEFDFSESPCVIATAVPTFVMELDVEDIISEI 599

Query: 537 LA-------------------TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            +                   T+AC  +I++  K    E+  L  ++  +     C HGR
Sbjct: 600 ASNLRMYAHNPQSHMLDDMLHTVACKSAIKANDKNDMAELQSLAEQVYYDERIRHCPHGR 659

Query: 578 PTFIKLKLSDIEKLFGR 594
           P    +  ++I   F R
Sbjct: 660 PVMFTMTKNNIAHQFKR 676


>gi|323496870|ref|ZP_08101902.1| DNA mismatch repair protein [Vibrio sinaloensis DSM 21326]
 gi|323318056|gb|EGA71035.1| DNA mismatch repair protein [Vibrio sinaloensis DSM 21326]
          Length = 652

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/562 (27%), Positives = 257/562 (45%), Gaps = 62/562 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP   +  
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIISLGFRGEALASISSVARLTMTSRPATQDQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++I+R+A+
Sbjct: 121 WSAYTEGRDMEVKLQPTAHPMGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T+    +RI+ V G  F+ + +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIKQYRAAKTDIQAEKRIAAVCGSAFVRHMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +EIDP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPEQFATYVLFIEIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-------- 349
           NVHPAK  +RF    ++ +FI Q++  A+ +        L+         ++        
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALAQSAHIDKPELTASAFHQPQPESPASAPESK 360

Query: 350 -------------------------------------APKTHLPKYATSLTNTQ------ 366
                                                +P++   +   +L+ T+      
Sbjct: 361 QALTSQVPDQVYQAVENTPSYPGKADYEEHRSAVREASPRSDWHESRPALSKTKSTERYS 420

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGL 426
           E    ++   +  +LL + D +       V  + +T+    +   +     I     + L
Sbjct: 421 EPAPSKQEVRAYQELLQTPDVSEPSRVAIVPPTSSTNAPASLPSVETLGKAICVVEGNCL 480

Query: 427 VIVDQH-------AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++ D+        A  E L   K +      K  SQ LL P  + L         + +  
Sbjct: 481 LMADKTGARLVNLAKAEWLRI-KGQLSIEQGKRKSQPLLVPLSLKLEPELLIAAEKIESI 539

Query: 480 LHRLGIKAERFGPNAIAIREIP 501
           L+ LGI+ ++ G  A+ +  +P
Sbjct: 540 LNALGIELKKRGQQALLVMGVP 561


>gi|323960318|gb|EGB55958.1| DNA mismatch repair protein MutL [Escherichia coli H489]
          Length = 475

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 133/408 (32%), Positives = 210/408 (51%), Gaps = 5/408 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + +  + T   L  +   +       +    
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQ-QLETPLPLDDEPQPAPRSIPENRVAAG 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
           +   +    +E +  +      +   P+     ++     ++ E    
Sbjct: 360 RNHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQQGEVYRQ 407


>gi|197334775|ref|YP_002157121.1| DNA mismatch repair protein MutL [Vibrio fischeri MJ11]
 gi|238690271|sp|B5FBR6|MUTL_VIBFM RecName: Full=DNA mismatch repair protein mutL
 gi|197316265|gb|ACH65712.1| DNA mismatch repair protein MutL [Vibrio fischeri MJ11]
          Length = 661

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 230/473 (48%), Gaps = 14/473 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSIDAGATRIDIDIEKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIPKDELTLALSRHATSKITSLDDLEAIVSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G +++   +P A   GT ++V DLFF  PAR  FL++++ E   I ++++R+A+
Sbjct: 121 WSAYAEGREMNVKLKPAAHPIGTTIDVVDLFFNTPARRKFLRADKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +R++ V G +F+ +A+E+  +  E+   G+ 
Sbjct: 181 SRLDVTINLRHNGKMVRQYRAAQTKPQIEKRLAAVCGANFLQHALEVELEHGELKFHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   IR  Y  ++P  +Y   +L +EI+P  VDV
Sbjct: 241 SSPEGARAQGDIQYCYVNGRMMKDKLINHAIRQGYESSLPANQYAAYILFIEINPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q+I  A+ +    ++ V + + +         +++ P 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAIFGALQQGASLSNVVCNDQPLVEEQVIENKESYFPP 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
               +   Q+  + +  +L          P  +  +  + +S              + + 
Sbjct: 361 MKEYVRQPQQSHYPKSEQLRVAVESTPSYPNKAPLDSWIPKSSTG-----------NSSS 409

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
             S         D+ A      + ++    +  +  S + +  + +     + 
Sbjct: 410 KPSALPRSFHNNDKPAEKALSNYNELLTTQSRVQRESSSQVNEQSLTFSTTQQ 462


>gi|240948078|ref|ZP_04752488.1| DNA mismatch repair protein [Actinobacillus minor NM305]
 gi|240297558|gb|EER48050.1| DNA mismatch repair protein [Actinobacillus minor NM305]
          Length = 646

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/567 (27%), Positives = 269/567 (47%), Gaps = 67/567 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++   I  GG    +I DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANQIHIEIEKGGAQLIKIRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKI+  +D   I + GFRGEAL SI +VS LTL SRP       Q
Sbjct: 66  IAKQDLALALARHATSKIATLEDLECILSLGFRGEALASISSVSRLTLTSRPEGQTEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G +++  ++P +   GT V V +LFF  PAR  FL++++ E   I +VIRR+A+A 
Sbjct: 126 AYAQGREMTVEIQPASHPVGTTVSVANLFFNTPARRKFLRTDKTEFQHIDEVIRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V+F  S       +      ++     +R++ + G+ FI  A  ++ +  ++ L G+ 
Sbjct: 186 PHVTFILSHNGKVVRQYRKVLDNSVEQQQKRVAAICGDAFIQQATHIDWQHGDLHLHGWV 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+PT  R   +  Y ++NGR ++DK I   IR AY ++I  G YP  V+ L++DP  VDV
Sbjct: 246 GMPTLARTQNDLCYSYVNGRMMRDKTINHAIRQAYGDSIAQGDYPAFVIFLDLDPSHVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG-----ISTSSVLSKKMISSFHQDNA-- 350
           NVHPAK  +RF    ++ +FI+Q + + + ++      + + +    + +  + QD    
Sbjct: 306 NVHPAKHEVRFHQGRLVHDFILQGVHQTLQQQAPLALMLESHTDEIHEAVPVYSQDTNRA 365

Query: 351 -----------------------------PKTHLPKYATSLTNT------------QEKL 369
                                          +H+P  ++S +              +E  
Sbjct: 366 AAGENIFAGQMASSTKYHGHSGGNGGRTTFSSHIPTKSSSPSAQRWYNELITTEKCEEDD 425

Query: 370 FLQENRLSTNDLLPSDDPTYSEDN-----DPVEESEATHYQLGIACAQIHQNYIISQTTD 424
           F Q   +   D     +P     +         E+ +  +      A + Q   + +  +
Sbjct: 426 FHQPVAIFYQDTAKQSEPERLSTHVERALPLNSETLSVPHSHATVLAIVQQQAALLKEHE 485

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
              ++      +    E+++         SQ+LL P  + L E + A+  +  ++L + G
Sbjct: 486 SFFLLPLTKLGQWHWLERLK------SGESQSLLIPLTLTLEEEQNAVWSQLKDELAKWG 539

Query: 485 IKAER---FGPNAIAIREIPAILSKKN 508
            +       G   +++  +P  L ++N
Sbjct: 540 FQISEKNWQGKVRLSMSAVPKGLREQN 566


>gi|325971464|ref|YP_004247655.1| DNA mismatch repair protein mutL [Spirochaeta sp. Buddy]
 gi|324026702|gb|ADY13461.1| DNA mismatch repair protein mutL [Spirochaeta sp. Buddy]
          Length = 588

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/602 (26%), Positives = 274/602 (45%), Gaps = 23/602 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ L   +  +IAAGE+IERP+  I+EL++N+LDA S  +   +  GG    ++ D+G
Sbjct: 1   MKIKLLDPLVAQRIAAGEVIERPASVIRELLDNALDAGSKSIVASVIEGGLEEIKVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+  + H TSK+   DD  +I + GFRGEAL SI +VS +T+ S        
Sbjct: 61  EGIEREDLPLLCESHATSKVRELDDLYHIKSMGFRGEALYSIASVSRITIASSFQGQEP- 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            QI +   +  +V P     GT+V V  LF  +PAR  FLK    E  +   V+   A+A
Sbjct: 120 YQITVDNGRKEAVLPGGPRTGTMVTVEGLFKELPARRQFLKRPSTEATMARAVLLEKALA 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P  +F F + ++ R  +   +      + +  +      +  +EL + +    L     
Sbjct: 180 FPDRAFRFISDQTVRVDLVPTTRKQRVLDVLL-LNQNIVSSEMLELYDSAGRFDLYAVCS 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F+R + +   +++N R V +  ++  +   Y E +  G +P   L +++DP  VD N
Sbjct: 239 SPAFSRSDRSHIKIYVNNRPVDEYSLVQAVTYGYGELLAGGSFPYCYLFIDVDPTLVDFN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           +HP K  ++ RN   I + ++  I   I +          +   S               
Sbjct: 299 IHPTKREVKLRNKAEIHHQVVSMIASQIKRTIPRLVKQELEAEASPLLAPLYETKPSSYQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTN-----DLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQ 412
           A+  +N  E    +    S       +LL  +    S   +  +  +E    Q  I   Q
Sbjct: 359 ASERSNRYEAPSQKAPLDSEWFQKARELLEGNRMQASRTTESQDIWAEQEDEQEFIYLGQ 418

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
               ++++Q  D L +VDQHAAHERLIF+++R+  N  ++     + P   ++       
Sbjct: 419 AFNLFLVAQKKDDLFLVDQHAAHERLIFDEVREKKNIQQL-----MIPLSFEVERDVDTY 473

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           ++EH +    LGIK ER       I  +P +    NI   L   I       TT   Q+ 
Sbjct: 474 LLEHQDVYLNLGIKLERTEDLLWQISSLPGLYR--NIEAQLVSFIQ-----KTTGDTQEV 526

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            + + A +AC+ +I++G  +  +    LL ++ +      C HGR   ++L   ++ K  
Sbjct: 527 EKGLYAVVACHAAIKAGDTVDRMMALSLLTKVFQLDEP-TCPHGRTFVVRLNKEELMKAV 585

Query: 593 GR 594
            R
Sbjct: 586 QR 587


>gi|254425033|ref|ZP_05038751.1| DNA mismatch repair protein MutL [Synechococcus sp. PCC 7335]
 gi|196192522|gb|EDX87486.1| DNA mismatch repair protein MutL [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/600 (26%), Positives = 266/600 (44%), Gaps = 54/600 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L+++++  +AAGE+I+  S  ++EL+EN+LDA ++R+   +    +   ++ DNG 
Sbjct: 8   QIQSLAQEVVYLMAAGEVIDSLSAVVRELVENALDAGATRITISVW-PSRWQVRVADNGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNTG 118
           GM    +  A   H TSKIS   D     + GFRGEAL SI  +S L + SR      +G
Sbjct: 67  GMDLANLSRAAIAHATSKISTYPDLFTTQSLGFRGEALHSIAQLSQLEICSRSHGPEASG 126

Query: 119 AQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+      +      A    GT+V VR LF   PAR   + +   +   +  +I +  +
Sbjct: 127 YQVNYDNSGLPDEISDAAIAPGTVVTVRHLFENWPARRQ-MPTADSQLKAVVALIHQFML 185

Query: 178 AYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
            +P+V +      +  + +   ++     P+ +  V   D          +     L   
Sbjct: 186 CHPQVIWQLEKDGTPWFSLWPSRTAKSIIPQLLRNVYDTDI--------NEYQADGLYLA 237

Query: 237 TGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
            G+P   +R   +   V INGR+V    ++ T+   +  TIP  RYP+  L L + P Q+
Sbjct: 238 IGLPDRCHRRRPDWVRVAINGRSVAVDELMQTLIAGFRRTIPRDRYPICFLHLTLPPAQL 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           D N HPAKS I  +  + +   +  +++K +    +S S+   +               L
Sbjct: 298 DWNRHPAKSEIYVQGLSKLCEQVTGALEKLLRIDDLSESAQTYRGAA------------L 345

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
            K A +         +Q +   T  L+ +        +D +  S        IA AQ+  
Sbjct: 346 IKAAEAEGEYAVSRQIQSDSSDTEGLVANQHVPPQSLSDTLPGSLPGD---LIAIAQVKD 402

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+++   G+ +++QH AHER++FE+++Q +    + S  +L+            L   
Sbjct: 403 TYILAEHAGGVCLIEQHIAHERVLFEQLQQRWQLVPLASPIVLS-----------DLSER 451

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAIL-SKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
             E L  LGI    FG N  AIR IP  L  + +  + L ++           +L   +E
Sbjct: 452 QVEQLDELGIVIAPFGENLWAIRTIPEPLYDRGDRTEALIEL-----------SLGANLE 500

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             L   AC  +IR+G  +   EM  LL + ++      C HGRP  + LK S + K F R
Sbjct: 501 AALVATACRTAIRNGTSLTIAEMQTLLNQWQRTQKPRTCPHGRPICLTLKESSLAKYFRR 560


>gi|157963356|ref|YP_001503390.1| DNA mismatch repair protein [Shewanella pealeana ATCC 700345]
 gi|189030414|sp|A8H8G8|MUTL_SHEPA RecName: Full=DNA mismatch repair protein mutL
 gi|157848356|gb|ABV88855.1| DNA mismatch repair protein MutL [Shewanella pealeana ATCC 700345]
          Length = 628

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/590 (27%), Positives = 272/590 (46%), Gaps = 54/590 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MAIEKLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS L L SR  +    
Sbjct: 61  SGIPKEDLSLALSRHATSKLKSLDDLEAILSFGFRGEALASISSVSRLILTSRTAEQTEA 120

Query: 119 AQIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++    P A   G+ VE  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAHAEGTEMAVKVLPAAHPVGSTVEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   + FT              +T   + +R+ Q+ G+ F    + +  + N++ L GY 
Sbjct: 181 ARRDIHFTLKHNGKTVRNYRPANTEIQYIQRLGQICGKAFAETCLRIECEHNDLKLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+   G +   Y ++NGR V+D+ +   +R A+++    G  P  VL+LE+DP QVDV
Sbjct: 241 QSPSAASGYSETQYFYVNGRLVKDRLVNHAVRQAFSQY-AEGISPGYVLMLELDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------------KGISTSSVLSKKMI 342
           NVHPAK  +RF     + ++I+Q++Q A+ +                   TS        
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYILQALQSAMAQSTQLSVDIEPESEQTTAWQTSPTRGAVAP 359

Query: 343 SSFHQDNAPKTHL------------------------PKYATSLTNTQEKLFLQENRLST 378
           S +  ++  K                            +   +  N++  L  Q +  + 
Sbjct: 360 SHYVDESKSKPSAVFDVRERHSSASQAGYSGGGGSYRSQLKPASRNSEVSLPSQTSIRAY 419

Query: 379 NDLLPSDDPTYSEDNDPVEESEATHYQLGIACA------QIHQNYIISQTTDGLVIVDQH 432
            +LL +D       N P+  +      +  +         I   Y +    D + ++D  
Sbjct: 420 GELLSTDSVQTQSTNVPLRPAAHQAGMMSTSHGAASMPPVIAGQYWVLVKEDKISLLDI- 478

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFG 491
           A   +   +       +  I  Q LL P  I + +    +I   ++ L +LGI+   R G
Sbjct: 479 AMVAKAALKAEIAAKLAQGIIGQPLLMPVAISVDDDWPEIIDNREQLLRKLGIELSIRLG 538

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEI-IDSSTTYTLQDRIENILATM 540
              + I+++P  L    +  L+ ++++ I ++  +   +   +    A  
Sbjct: 539 Q--LIIKKVPPYLRDSQLAALIPELLEWIRLELPSDAAVIKWLAEQAANR 586


>gi|315186032|gb|EFU19795.1| DNA mismatch repair protein MutL [Spirochaeta thermophila DSM 6578]
          Length = 573

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/596 (25%), Positives = 269/596 (45%), Gaps = 38/596 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E +  +IAAGE+I+RP+  ++EL++N+LDA S+ +   I+ GG     + D+G 
Sbjct: 11  RIKLLEEAVFRKIAAGEVIDRPAAVVRELLDNALDAASTEITVEISQGGIERILVLDDGE 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++      H TSKI    D   + T GFRGEAL SI AV+   + SR     +G 
Sbjct: 71  GMVPEDVRRCYLPHATSKIRSEQDLLAVTTLGFRGEALGSIAAVATTRIASRARGTPSGY 130

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +   ++       +  GT VEV  LF + PAR  FLK+   E  L   ++   A+ +
Sbjct: 131 FVLVDRGRLVEEGETHLPEGTRVEVERLFSSFPARKRFLKNPSTEGLLCRRMVVEKALPF 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-KSNEITLQGYTG 238
           P V+F F       + +       +   R+   + E F  +A E  E + +E+ ++G   
Sbjct: 191 PHVAFRFVRDGQMEFYLPP----QDLLARVCAALPELFKPSASERFEVEQDEVRIEGVLL 246

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F + +     +++N R VQ+  +   +   Y   +P G+YP  V+ L + P +VD N
Sbjct: 247 SPAFPQRDRRHIRIYLNRRLVQEFSLAQAVAYGYRGVLPGGQYPAAVVFLTLPPERVDFN 306

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK   + R  + +   + +++++A+                    +  AP T  P+ 
Sbjct: 307 VHPAKREAKIRGLSSLHALLARAVEQALKDWIGV--------------RRIAPTTGRPE- 351

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
               T    +   + +R  T +L      T++  +D          +      Q    ++
Sbjct: 352 TVGETERVYRPHPEPSRSGTGELFTGPSHTFTLPSDSGHPPSPRTGEGFTYLGQAFGVFL 411

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +    L++VDQHAAHER+++ ++    +S ++     L P    +   E A + +  E
Sbjct: 412 VVEREGTLLLVDQHAAHERILYNRLTSHPSSQEL-----LFPYAFPVDADEAARLEDARE 466

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           ++  LGI+          +  +PA L   + P ++   +           L D   +  A
Sbjct: 467 EIEALGIRF-VLEEGRCTLTHLPAPL--SDAPHVVAQWL-------KGERLADPERDAYA 516

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC G+I+ G  +  +    LL +         C HGRP ++++   ++ +   R
Sbjct: 517 TLACRGAIKEGEVVDRLTALDLLSQTFSLEEPF-CPHGRPLWVEITREELFRRIRR 571


>gi|302338864|ref|YP_003804070.1| DNA mismatch repair protein MutL [Spirochaeta smaragdinae DSM
           11293]
 gi|301636049|gb|ADK81476.1| DNA mismatch repair protein MutL [Spirochaeta smaragdinae DSM
           11293]
          Length = 613

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/618 (22%), Positives = 263/618 (42%), Gaps = 42/618 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L +++  +IAAGE+I+RP   ++EL++N++DA +  ++  +AGGG    ++ DNG 
Sbjct: 11  SIHLLRDQVARKIAAGEVIDRPFSLLRELMDNAVDAGADTIDVHLAGGGTRSVRVVDNGC 70

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++ +    H TSKIS  +D   I + GFRGEAL SI A S L + S   +     
Sbjct: 71  GMEREDLELCFLPHATSKISEVEDLDRITSLGFRGEALSSIAACSRLRITSAVAEGE-AF 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +   K+ S++P     GT+VE  DLF++IPAR  FLKS+Q E +    +    A+A+
Sbjct: 130 TIEVDNGKLLSLQPSKGRKGTVVEASDLFYSIPARKRFLKSDQAELSACRKLFAEKALAF 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-KSNEITLQGYTG 238
           P++SF   +    +  +       +  +R++         + +   +             
Sbjct: 190 PEISFRLFSEGELKLFLPA----SSLIDRVTASYPGQVHASMIHTIQGAGEGFHFTALGS 245

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
             +  R +    ++++N R + +  ++  +   Y E +P G +PV  L LE+DP +VD N
Sbjct: 246 GLSLYRKDRRYIHIYVNKRKIDEFSLVQAVSYGYGEYLPGGTFPVCFLFLEVDPERVDFN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH------------ 346
           +HPAK  +RFR    I + +   I+  +  K  +             H            
Sbjct: 306 IHPAKKEVRFRGLKEIHHQVSSGIRDFLRSKWPTPLPYEIPAADDRPHLSEGEKNDFGSS 365

Query: 347 ---------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
                       +  +  P+   S +             +  +    D    +      +
Sbjct: 366 GFPKPSYDKAPFSKSSMSPRSKNSFSFPPSSTVAPVKSNAEQNRQFYDRFEQTRSQQEQQ 425

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
            +E +         Q+   ++ ++      ++DQHAAHER+++E+     +  +     L
Sbjct: 426 AAEESQAYAFRYLGQVFGLFLAAEKEGTFYLIDQHAAHERILYEQFVAGASRKQ----QL 481

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN-AIAIREIPAILSKKNIPQLLRDI 516
           L P+ + L +    L+    +    LGI  E       + +  +P      ++ + +   
Sbjct: 482 LIPKRLQLDDEGKTLLQGQIDYYRGLGIVIEAEKEGDNLLLTALPESC--VHLEKEITTF 539

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           I+     S  ++     E I A +AC  +I+ G  +      +++          +C HG
Sbjct: 540 IESQETGSDGFS-----ERIFANLACKAAIKEGEFLPPETAKKIIAGTFALKQ-HRCPHG 593

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP +  +   ++ K  GR
Sbjct: 594 RPLYFSVTEKELYKAVGR 611


>gi|282899144|ref|ZP_06307125.1| DNA mismatch repair protein [Cylindrospermopsis raciborskii CS-505]
 gi|281196060|gb|EFA70976.1| DNA mismatch repair protein [Cylindrospermopsis raciborskii CS-505]
          Length = 550

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/597 (24%), Positives = 272/597 (45%), Gaps = 63/597 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  +++  I AGE+I+  S  ++EL+ENSLDA ++R+   +    K   ++TDNG G
Sbjct: 2   IQSLPTEVVYLITAGEVIDSLSAVVRELVENSLDAGATRIVISLY-PEKWRVRVTDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E++  A   H TSKI    D   I T GFRG+AL S+  +  L + SR      G +
Sbjct: 61  MSLEDLEQAAIAHSTSKIHHAADLWKIKTLGFRGQALHSLTTLGELEIFSRCAGEKQGWR 120

Query: 121 IAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  +     +   V     GT+V V +LF     R   L ++  +   +   I+++A+ +
Sbjct: 121 VVYNKNGNVTKTEVVAIAPGTVVTVDNLFGNYAERRQGLPNKNQQLKKVQATIQQIALCH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P+V++     K+  + +          P+ ++QV   D     + + E  + I L    G
Sbjct: 181 PQVTYQVWQDKTEWFTIYPAPAVERIIPQILNQVKPGDLKGINLTIPELDSTINL--VVG 238

Query: 239 IP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           +P   +R   +   + INGR V+   +   +  A+ +T+P  RYPV  + L I P Q++ 
Sbjct: 239 LPDRCHRHKPDWVKIAINGRIVKSPELEEAVFGAFYKTLPRDRYPVCFVHLTIQPDQINW 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           N +PAK+ I     T  +  + +SI +A                                
Sbjct: 299 NRNPAKNEIYLNKMTYWQQKVTESIDQAF------------------------------- 327

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              S+ ++  K  +Q  R++    L      Y+  +  +EE++ ++        Q    Y
Sbjct: 328 ---SIASSTIKESVQTGRITNLFKLAETKGDYNFSHSNLEENKGSNLIDLKVIGQASNTY 384

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+++ ++G+ +++QH AHER+I+E++   +    + S  +L             L  E  
Sbjct: 385 IVAEYSEGMWLIEQHIAHERVIYERLCDQWQIVPVESPIVL-----------YQLSTEQV 433

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           + L ++ +  E FG N  A+R +P +L  +       D  + +++ S    L+     + 
Sbjct: 434 KQLEKINLDIECFGENLWAVRSVPEMLKNRE------DCREALLELSMGGNLEAAKVAV- 486

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              AC  +IR+G  M  +EM +L+ + ++  N   C HGRP  + L+ S + + F R
Sbjct: 487 ---ACRTAIRNGTPMTLVEMEQLIYDWQRTRNPRTCPHGRPICLTLEESALARFFRR 540


>gi|325479567|gb|EGC82663.1| DNA mismatch repair protein, C-terminal domain protein
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 616

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/625 (28%), Positives = 292/625 (46%), Gaps = 40/625 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL  K I +IAAGE+IE P   +KEL+ENS+D+++  +   I  GGK++ ++TDNG
Sbjct: 1   MTIVKLDTKTIEKIAAGEVIESPMSIVKELVENSIDSKADSITVEIKNGGKTYIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++ +A  +H TSKI D  D  +I++ GFRGEAL SI  VS +T ++R  + + G
Sbjct: 61  CGIEREDLDLAFSKHATSKIKDFNDLFDIYSLGFRGEALSSIATVSKVTAITRTNEEDIG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++I I    IS +  +A N GT +   D+F  IP R  FL+S+ +E N I  ++   AI 
Sbjct: 121 SKIVIDNG-ISKISSIATNIGTSIIAEDIFRDIPVRHKFLRSDAIEANKINRLMYAFAIG 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  +SF +    +  +  N      +F  ++S ++ +   +N +E+   ++E  L+GY  
Sbjct: 180 YNNISFKYIKNDNVLFTTNKSY---DFKNKVSDLLDDSLGDNLLEIKGSNDEYKLKGYIS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + RGN +  Y+FIN R ++   I+ T+  AY   IP  R+P   + +  D + +DVN
Sbjct: 237 NSNYYRGNRSLQYLFINNRLIESDIIVRTVEHAYKNNIPSNRFPAFFMFVTTDAKNLDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI---------------- 342
           +HP K  I F     + N I   I KA++           +                   
Sbjct: 297 IHPNKKTINFNYEESLLNLIENIILKALSNNYKPNEIKFVEDKDDELMDFSDYSKLLNEY 356

Query: 343 ---SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
              + F ++N  +T     + +   +Q  L   +      ++L  D  +Y   N    ES
Sbjct: 357 NNTNKFVKENDDETKYESQSQNNEQSQSNLVDDDFFDLEANILNEDKHSYINTNHKNTES 416

Query: 400 EA----------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +                    A     Y + +  + L I++   A E++   K   DF  
Sbjct: 417 KQIPTLPKNSFIDEIDHIEYKASFLGRYSLFERDNTLYILNHRRASEKINITKFMDDFKR 476

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             + SQ L+  +II+L++ +     +  E + +LG  AE  G ++I IR +P I      
Sbjct: 477 ESVASQILMDAKIINLMQNDVVKFKQKQEYIKKLGFDAEIIGESSIIIRSVPVIFEIPEN 536

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
                D++D   D  T Y  +   ++ L  +      R G K+   E    L+E+    N
Sbjct: 537 EDFFYDLLDIDYDMGTDYIYKKIKKSKLNLL-----FRKGNKIGEKEATAYLKELFSMEN 591

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
             +   G+PT IK+   D+EK F R
Sbjct: 592 PYKTLDGKPTIIKVSEEDLEKYFER 616


>gi|170077272|ref|YP_001733910.1| DNA mismatch repair protein [Synechococcus sp. PCC 7002]
 gi|169884941|gb|ACA98654.1| DNA mismatch repair protein [Synechococcus sp. PCC 7002]
          Length = 565

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/604 (23%), Positives = 264/604 (43%), Gaps = 67/604 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L   +I  IAAGE+I+  +  ++EL EN++DA ++R+   I    +   ++ DNG G
Sbjct: 4   IKQLPNDVIQLIAAGEVIDSLAAVVRELAENAIDAGATRINIDI-QPQRWQIRVVDNGQG 62

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E++      H TSKI D  D ++I + GFRGEAL SI  V+ LT+ S       G Q
Sbjct: 63  MDLEDLQQCALPHRTSKIGDRQDLAHIKSLGFRGEALHSIAQVAKLTIASCQDGQP-GYQ 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +    +S      M  GT+V V D+F   P R + L +   +      +I  +A+  P
Sbjct: 122 LTVQQNHVSEPLLKPMAVGTMVTVTDIFQNFPVRRHALPAIAQQLKTAQQMIYHLALGQP 181

Query: 181 KVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAV-------ELNEKSNEIT 232
           ++++  +      + ++  ++     P+ +  +  +D I           E N       
Sbjct: 182 QITWQVNQNNQPWFVISAGKNAQEILPQLLRSISIQDLIFQRYQATDFLTENNSDYATSY 241

Query: 233 LQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           L+   G+P   +R  A+   + INGR V+   +   I   ++ T+P  R+P+  + L + 
Sbjct: 242 LEVVLGLPDRCHRHQADWLKLAINGRIVKFSALEQAIMKGFSRTLPRDRHPICFVHLHVP 301

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P  +D N HPAKS I  ++ T+ +  I Q+I K ++    +   + +++++S        
Sbjct: 302 PEHIDWNRHPAKSEIYLQHQTLWQEIIPQAIAKGLSFSEANLPRLENQRVLSLIQAAEKK 361

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
           + +  +  +  + T                                 +   H ++     
Sbjct: 362 ENYSIEPPSEHSTTS--------------------------------ASNPHKKVLKVIG 389

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q    YII++  DG+ +V+QH A ER I+E + +++         +    + DL   +  
Sbjct: 390 QARNTYIITEHPDGIWLVEQHIADERAIYEDLCKNWQL----ISPIQPVLLNDLSPKQIE 445

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL-SKKNIPQLLRDIIDEIIDSSTTYTLQ 530
            + +      +LG+  E FG N   +  IP  L    ++   L ++           +  
Sbjct: 446 QLTD------QLGLDLEIFGENVWRVNTIPRALQGHSDLEAALLEL-----------SRG 488

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
             +E     +AC  ++R+G  +    M  ++   ++  N S C HGRP ++ L+ + + +
Sbjct: 489 GDLEAAQVAIACRTAVRNGTPLDFPTMQTIIDRWQQCENPSTCPHGRPIYLALEETSLYR 548

Query: 591 LFGR 594
            F R
Sbjct: 549 FFRR 552


>gi|149005925|ref|ZP_01829654.1| DNA mismatch repair protein [Streptococcus pneumoniae SP18-BS74]
 gi|147762281|gb|EDK69242.1| DNA mismatch repair protein [Streptococcus pneumoniae SP18-BS74]
          Length = 535

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/535 (29%), Positives = 262/535 (48%), Gaps = 47/535 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---- 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKEN 360

Query: 357 -----KYATSLTNTQE------------------------------KLFLQENRLSTNDL 381
                K   S  +  E                              KL   E + +  D 
Sbjct: 361 TLYYEKTEPSRPSQTEVADYQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQ 420

Query: 382 LPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           L   +   +  +   D +E  EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+
Sbjct: 421 LDHPELDLASIDKAYDKLEREEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERV 480

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
            +E+ R+   +   + Q LL P I +    +   + E    L  +G+    +G N
Sbjct: 481 KYEEYRESIGNVDQSQQQLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGEN 535


>gi|153840107|ref|ZP_01992774.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus AQ3810]
 gi|149746286|gb|EDM57358.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus AQ3810]
          Length = 669

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/651 (23%), Positives = 271/651 (41%), Gaps = 89/651 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVSINVRHNGKVIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE-------- 289
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E        
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 290 -IDPRQVDVNVH-------------------------PAKSYIRFRN------------- 310
            + P + +V  H                         P  +   F               
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPQVNESAFHRAEPEERESQPETT 360

Query: 311 ------------PTIIRNFI--------IQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
                       P  +   I            +     +  S SSV   ++  SF + + 
Sbjct: 361 PQYSPQSVSTTVPKRVYQAIDKTPTYPGRTDYEIKPRDRAPSDSSVREARIADSFKRTDW 420

Query: 351 PKTHLPKYAT-------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            ++ L                ++ ++      L T D         +      E S    
Sbjct: 421 IESKLAPKPNVGKERHAEPAPSKREVHAYHELLKTPDFESQQAEQPTSIESVREVSLPQV 480

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A   + + +++  +  G+ +V    +       ++    +   + +Q LL P  +
Sbjct: 481 TALGKALVVVDEQFVLMSSDSGVALVSLPRSEFYRTKGQL--TPSEGALKAQPLLVPLSM 538

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-- 521
            L      L  ++ +D  +LGI+ +     A+ +  +PA L ++N+  L+ D++      
Sbjct: 539 KLDTDLVRLAQDYQQDFAQLGIQLKARNDKALMVMGVPAPLRQQNLQNLVPDLLSYAQTW 598

Query: 522 ---DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
              + ++T  L   I+ +   +    +++S   +   E  +++ E+E+  +
Sbjct: 599 MKGEKASTQMLPALIDWLAVQV---TTVKSHYTLS--EAIQIIAELEQLRH 644


>gi|85710758|ref|ZP_01041819.1| DNA mismatch repair enzyme, ATPase [Idiomarina baltica OS145]
 gi|85695162|gb|EAQ33099.1| DNA mismatch repair enzyme, ATPase [Idiomarina baltica OS145]
          Length = 574

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/550 (25%), Positives = 268/550 (48%), Gaps = 16/550 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L  ++ NQIAAGE++ERP+  +KEL+EN+LDA++S +   I  GG    +I DNG
Sbjct: 1   MPIKQLPVELANQIAAGEVVERPASIVKELVENALDAKASELVIDIESGGAKRIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS L L+S+P + +  
Sbjct: 61  VGIPRDELALALSRHATSKIADIDDLEAITSLGFRGEALASISSVSRLRLVSKPAEQSAA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G+ +   + P +   GT V+++D+F+  PAR  FL++++ E   I +VI+R+A+
Sbjct: 121 WQAWSEGKDMQVRIEPASHPDGTTVDIQDVFYNTPARRKFLRTDKTEFGHIDEVIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVELNEKSNEITLQG 235
           +   +  T +            S +       R+++V G  F  +A+   + +++I ++G
Sbjct: 181 SRWDIDITLNHNGKRVRYYPAVSEHDQLHWRRRLAKVCGSGFAQDALYFQQHAHDIHIEG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +   P   R   +  Y F+NGR ++DK I   IR AY   +   R P   + L +   QV
Sbjct: 241 WLAAPEQCRHQGDVQYSFVNGRMMKDKLINHAIRQAYDSFLTAERVPTFAIYLTVPADQV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHPAK  +RF     + +F++ ++++ +  +    ++  S ++  +  Q        
Sbjct: 301 DVNVHPAKHEVRFHQQRQVHDFVLNTVKQLLLGQHQEDTNSASDRVEDATQQPRHLYQTG 360

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                  +N   + +    + +T +             +   ++              H 
Sbjct: 361 GSKKHVTSNPSVRDYSAHAQSNTANRSRLGASILPNAVELTVDARQW-----RIVDVFHG 415

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM- 474
            + + +  +    +D      RL+  +++Q +    +  Q LL  + I+L E E      
Sbjct: 416 RFALIRRDEQPAWLDLVNVQRRLLEPQIKQQYQ-QGMAGQPLLVEQKINLSETEWTKKQV 474

Query: 475 -EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE--IIDSSTTYTLQD 531
            ++  +L + G+     G  +  + ++P++L +K+I   +  ++++  + D +    L D
Sbjct: 475 SQYSSELAQSGVSFYWQGA-SFIVTQVPSMLRRKHIASSVLSLLEQCKLSDQAIIEFLAD 533

Query: 532 RIENILATMA 541
              + + + +
Sbjct: 534 AAVDTMLSKS 543


>gi|28899593|ref|NP_799198.1| DNA mismatch repair protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260876666|ref|ZP_05889021.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus AN-5034]
 gi|260896641|ref|ZP_05905137.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus Peru-466]
 gi|31076794|sp|Q87L05|MUTL_VIBPA RecName: Full=DNA mismatch repair protein mutL
 gi|28807829|dbj|BAC61082.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086324|gb|EFO36019.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus Peru-466]
 gi|308094004|gb|EFO43699.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus AN-5034]
          Length = 669

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/651 (23%), Positives = 271/651 (41%), Gaps = 89/651 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVSINVRHNGKVIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE-------- 289
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E        
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 290 -IDPRQVDVNVH-------------------------PAKSYIRFRN------------- 310
            + P + +V  H                         P  +   F               
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPQVNESAFHRAEPEERESQPETT 360

Query: 311 ------------PTIIRNFI--------IQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
                       P  +   I            +     +  S SSV   ++  SF + + 
Sbjct: 361 PQYSPQSVSTTVPERVYQAIDKTPTYPGRTDYEIKPRDRAPSDSSVREARIADSFKRTDW 420

Query: 351 PKTHLPKYAT-------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            ++ L                ++ ++      L T D         +      E S    
Sbjct: 421 IESKLAPKPNVGKERHAEPAPSKREVHAYHELLKTPDFESQQAEQPTSIESVREVSLPQV 480

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A   + + +++  +  G+ +V    +       ++    +   + +Q LL P  +
Sbjct: 481 TALGKALVVVDEQFVLMSSDSGVALVSLPRSEFYRTKGQL--TPSEGALKAQPLLVPLSM 538

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-- 521
            L      L  ++ +D  +LGI+ +     A+ +  +PA L ++N+  L+ D++      
Sbjct: 539 KLDTDLVRLAQDYQQDFAQLGIQLKARNDKALMVMGVPAPLRQQNLQNLVPDLLSYAQTW 598

Query: 522 ---DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
              + ++T  L   I+ +   +    +++S   +   E  +++ E+E+  +
Sbjct: 599 MKGEKASTQMLPALIDWLAVQV---TTVKSHYTLS--EAIQIIAELEQLRH 644


>gi|111115035|ref|YP_709653.1| DNA mismatch repair protein [Borrelia afzelii PKo]
 gi|216264048|ref|ZP_03436042.1| DNA mismatch repair protein MutL [Borrelia afzelii ACA-1]
 gi|123341395|sp|Q0SNV1|MUTL_BORAP RecName: Full=DNA mismatch repair protein mutL
 gi|110890309|gb|ABH01477.1| DNA mismatch repair protein [Borrelia afzelii PKo]
 gi|215980092|gb|EEC20914.1| DNA mismatch repair protein MutL [Borrelia afzelii ACA-1]
          Length = 611

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/623 (24%), Positives = 274/623 (43%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISQEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTGNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN  ++  ++   I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFKVLKKEHENIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PANFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---FHQDNAPKTHL 355
           VHP K  +RF N   +   I  +I    +K   +   V+ K+ ++      +      + 
Sbjct: 298 VHPQKKEVRFFNLPFLFKLISDNINNFFDKDTNNYHDVIIKRQLTDDDHLIEMINQSENF 357

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA-------------- 401
            K +T      + L  ++N    N  +   D    + N  +E   +              
Sbjct: 358 NKTSTYDVPQNKNLETEDNTNEPNKNMIQKDVGLRKYNSIIENRPSLKENITNIFSDSFL 417

Query: 402 ----------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                               QI   ++I +  + +  +DQHA HE++I+EK+R   NS K
Sbjct: 418 EFEEPPNKNEEEDIKFNYIGQIFSEFLIVEKANEIYFIDQHAVHEKIIYEKLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E   + +    +I    E+  ++ I   + G     +  IP I ++     
Sbjct: 475 TIQKLLIPIEFTIVDKNIEKIIDSEIEEYKKMDIIISKIGSEKYQLESIPNICNQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + +     S  + T+     ++ AT+AC  ++++   +       L+ E  K     
Sbjct: 532 ---NTLINFFQSRRSRTINSLESDLYATIACRKAVKTNDILSVEFSKYLINEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYYKISKFELEKKVDR 610


>gi|256545159|ref|ZP_05472525.1| DNA mismatch repair protein MutL [Anaerococcus vaginalis ATCC
           51170]
 gi|256399200|gb|EEU12811.1| DNA mismatch repair protein MutL [Anaerococcus vaginalis ATCC
           51170]
          Length = 603

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/611 (26%), Positives = 290/611 (47%), Gaps = 26/611 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI +L +K I +IAAGE+IE P   +KEL+EN++DA++  +   I  GGKS+ ++TD+G
Sbjct: 2   MKIIELDKKTIEKIAAGEVIESPVSIVKELVENAIDAKAKNIVVEIKNGGKSYIRVTDDG 61

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  ++  +A +RH TSKI D  D  ++ T GFRGEAL SI A +++  +S+    N G
Sbjct: 62  IGIDEDDFKIAFKRHATSKIKDFSDLYDLFTLGFRGEALSSIVACANIKAISKTKNQNLG 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++      I S   +A N GT +EV DLF  +P R  FL S+  E+N I  +++ +A+ 
Sbjct: 122 KELIFENGNIKSYNSIATNMGTSIEVYDLFSNLPVRRKFLSSDINESNKIAKIMQALALG 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  VSF F       +       + +   +I +++ E+  +N +++  +++   ++G+  
Sbjct: 182 YNDVSFKFIKDNRLIFHTL---KDQDMDNKIIELLDENLKDNLIKIEIQNSLYKIKGFIS 238

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + RGN +  Y+F+N R +++  I   I   Y   IP  R+P   + +E +   +DVN
Sbjct: 239 KVNYYRGNRSFQYIFVNNRLIENDNISKAIENEYRTLIPNQRFPAFFIFIETNSNNIDVN 298

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-----QDNAPKT 353
           +HP K  I+F     + + +   I K + +        +S+K     +      +     
Sbjct: 299 IHPNKKEIKFTYQNELIDLLEDKISKILYENINIREVKVSEKNKEELNFYDDYSEILNSY 358

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT----------H 403
           +  K   +  N ++    +E      D     +  + E N+ +E+ +             
Sbjct: 359 NRVKEEDNSYNFEKNPDKKEQAKKEEDFFSGVELNFIEKNEIIEDIDYNKKSLGTVKKLE 418

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
               I    I   Y +    D ++I+D   A +R+ F+K  ++FN+ KI+SQ L+  +I+
Sbjct: 419 IDKLIYKCSIFNRYSLFSYNDKILILDNRRADQRIKFDKYIENFNNGKISSQQLIESKIV 478

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
            +   E    +E  E   ++G   E F  + + IR +P I  +        D++D  ID 
Sbjct: 479 KVNLQEYNKYLEKKEIFKKMGFDIEEFSYDKLIIRAVPFIFEEPENNNFFYDLLD--IDE 536

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                  ++I  ++         R G  +   E    + ++ K  N  +   G+ T I +
Sbjct: 537 KNENLFLNKISKLIN----KNVFRKGDLINKSEAMATIDKLNKCDNPYKTYDGKSTIIMI 592

Query: 584 KLSDIEKLFGR 594
           +  ++EK F R
Sbjct: 593 EEDELEKYFDR 603


>gi|158336588|ref|YP_001517762.1| DNA mismatch repair protein [Acaryochloris marina MBIC11017]
 gi|158306829|gb|ABW28446.1| DNA mismatch repair protein MutL [Acaryochloris marina MBIC11017]
          Length = 573

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/607 (24%), Positives = 273/607 (44%), Gaps = 66/607 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++++IAAGE+I+     ++EL++N+LDA + R+   +        Q+ DNG 
Sbjct: 9   QIQPLGTDLVHRIAAGEVIDSLGAVVRELLDNALDAGADRISVSLW-PQDWRIQVVDNGQ 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+T+  +  A   H TSK+   +D  +I T GFRGEAL S+  +  L + SRP  +  G 
Sbjct: 68  GLTAANLAQAATPHTTSKLQREEDLWDIQTLGFRGEALHSLAQMGRLEICSRPVGSAQGC 127

Query: 120 QIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++    +     +       GT+  V DLF   P R   L     +   +  +I   A+ 
Sbjct: 128 RVRYDHQGHVVAQETVAIAPGTVATVADLFQDWPTRKQALPDPARQMRGVQTIIHDYALC 187

Query: 179 YPKVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +P+V++         + +   ++     P+ ++ +   D  ++  ++ +      ++   
Sbjct: 188 HPQVTWQVQQNNRLWFSIAPAKAAQDILPQLLATLQPGDLCHHRCQIPDLPGNNVVEVVL 247

Query: 238 GIP-TFNRGNANQFYVFINGRTVQ--------DKFILSTIRTAYAETIPLGRYPVVVLLL 288
           G+P   +R   +   V +NGR VQ           +  TI  A+ +T+P  R+P+  + L
Sbjct: 248 GLPDRCHRHRPDWVKVAVNGRCVQVSGEDAGQSHPLEQTILGAFRQTLPRHRHPLCFIHL 307

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
             DP+ VD + HPAK+ I  R+    R  +  +IQ+A+        S  ++K+       
Sbjct: 308 HADPQHVDWHRHPAKTEIYLRHLDQWRPAVTTTIQEALQIPAEIQDSGHTQKIRQLMKVA 367

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
            A   +  +  + L++  E+   +                               + +  
Sbjct: 368 EAKGVYHLQQPSLLSSQPEQAAGESG-----------------------------FNVLK 398

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           A AQ+H+ YI+++   G+ +V+QH AHER+++E++ QD++   +T   +L          
Sbjct: 399 AIAQLHRTYIVAEHPSGVWLVEQHIAHERVLYEQLGQDWHLVPLTPPMML---------- 448

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK-NIPQLLRDIIDEIIDSSTTY 527
              L     E L  +GI    FG    AIR  P  L+++ +    L ++           
Sbjct: 449 -RDLTERQVEQLTDIGIDITEFGHQLWAIRSAPQRLAERPDCEAALIEL----------- 496

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
           +  + IE  LA  AC  +IR+G  +  +EM  LL + ++  +   C HGRP ++ ++ +D
Sbjct: 497 SQCESIEAALAATACRSAIRNGMALNLLEMQNLLDQWQQTRHPRTCPHGRPIYLSMEEAD 556

Query: 588 IEKLFGR 594
           + + F R
Sbjct: 557 LSRFFRR 563


>gi|260900901|ref|ZP_05909296.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus AQ4037]
 gi|308106528|gb|EFO44068.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus AQ4037]
          Length = 669

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/651 (23%), Positives = 271/651 (41%), Gaps = 89/651 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGLDMQVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVSINVRHNGKVIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE-------- 289
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E        
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 290 -IDPRQVDVNVH-------------------------PAKSYIRFRN------------- 310
            + P + +V  H                         P  +   F               
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPQVNESAFHRAEPEERESQPETT 360

Query: 311 ------------PTIIRNFI--------IQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
                       P  +   I            +     +  S SSV   ++  SF + + 
Sbjct: 361 PQYSPQSVSTTVPERVYQAIDKTPTYPGRTDYEIKPRDRAPSDSSVREARIADSFKRTDW 420

Query: 351 PKTHLPKYAT-------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            ++ L                ++ ++      L T D         +      E S    
Sbjct: 421 IESKLAPKPNVGKERHAEPAPSKREVHAYHELLKTPDFESQQAEQPTSIESVREVSLPQV 480

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A   + + +++  +  G+ +V    +       ++    +   + +Q LL P  +
Sbjct: 481 TALGKALVVVDEQFVLMSSDSGVALVSLPRSEFYRTKGQL--TPSEGALKAQPLLVPLSM 538

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-- 521
            L      L  ++ +D  +LGI+ +     A+ +  +PA L ++N+  L+ D++      
Sbjct: 539 KLDTDLVRLAQDYQQDFAQLGIQLKARNDKALMVMGVPAPLRQQNLQNLVPDLLSYAQTW 598

Query: 522 ---DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
              + ++T  L   I+ +   +    +++S   +   E  +++ E+E+  +
Sbjct: 599 MKGEKASTQMLPALIDWLAVQV---TTVKSHYTLS--EAIQIIAELEQLRH 644


>gi|328472281|gb|EGF43151.1| DNA mismatch repair protein [Vibrio parahaemolyticus 10329]
          Length = 669

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/651 (24%), Positives = 271/651 (41%), Gaps = 89/651 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVSINVRHNGKVIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE-------- 289
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E        
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 290 -IDPRQVDVNVH-------------------------PAKSYIRFRN------------- 310
            + P + +V  H                         P  +   F               
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPQVNESAFHRAGPEERESQPKTT 360

Query: 311 ------------PTIIRNFI--------IQSIQKAINKKGISTSSVLSKKMISSF-HQDN 349
                       P  +   I            +     +  S SSV   ++  SF   D 
Sbjct: 361 PQYSPQPVSTTVPERVYQAIDKTPTYPGRTDYEVKPRDRAPSDSSVREARIADSFKRTDW 420

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATH 403
                 PK         E    +    + ++LL + D    +   P              
Sbjct: 421 IESKPAPKPNVGKERHAEPAPSKREVHAYHELLKTPDFESQQAEQPTSTESVREVSLPQV 480

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A A + + +++  +  G+ +V    A       K+    +   + +Q LL P  +
Sbjct: 481 TALGKALAVVDEQFVLMSSDSGVALVSLPRAEFYRTKGKL--TPSEGALKAQPLLVPLSM 538

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-- 521
            L  G   L   + +D  +LGI+ +     A+ +  +PA L ++N+  L+ D++      
Sbjct: 539 KLDTGLVKLAQNYQQDFAQLGIQLKARNDKALMVMGVPAPLRQQNLQNLVPDLLSYAQTW 598

Query: 522 ---DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
              + ++T  L   I+ +   +    +++S   +   E  +++ E+E+  +
Sbjct: 599 MKGEKASTQMLPALIDWLAVQV---TTVKSHYTLS--EAIQIIAELEQLRH 644


>gi|268592882|ref|ZP_06127103.1| DNA mismatch repair protein MutL [Providencia rettgeri DSM 1131]
 gi|291311672|gb|EFE52125.1| DNA mismatch repair protein MutL [Providencia rettgeri DSM 1131]
          Length = 656

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/405 (32%), Positives = 214/405 (52%), Gaps = 8/405 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG+   +I DNG
Sbjct: 1   MAIHILSPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGEKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL S+P      
Sbjct: 61  CGISKDELILALARHATSKIATLDDLEAIMSMGFRGEALASISSVSRLTLTSKPADQTEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V+P A   GT VEV DLF+  PAR  F+++E+ E   I +++RR+A+
Sbjct: 121 WQSYAEGRDMEVIVKPAAHPNGTTVEVLDLFYNTPARRKFMRTEKTEFGHIDEIVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           + P V+   +       +            R+  + G  F+  A+ L+ + +++ ++G+ 
Sbjct: 181 SRPDVAINLTHNGKLVKQYRAAHDEAQQERRLGTICGTGFMQGALALSWEHSDLAIKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+     +   Y ++NGR ++D+ I   IR AY   +   + P  VL L IDP+QVDV
Sbjct: 241 VSPSMT-SGSETQYCYVNGRMMRDRLINHAIRQAYEGHLDENQQPAYVLYLTIDPKQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q+++  +    +  +S+     I   + +   +    +
Sbjct: 300 NVHPAKHEVRFHQARLVHDFIYQAVRTVL----LEAASIDELPGIEPVNTELENRPSAGE 355

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
              S  +   K    E++    + L      Y + +     ++  
Sbjct: 356 NYFSSPSVAPKQHKAEDKTIVENTLLEPKTPYKQASHLKNNAKNH 400


>gi|86607230|ref|YP_475993.1| DNA mismatch repair protein [Synechococcus sp. JA-3-3Ab]
 gi|86555772|gb|ABD00730.1| putative DNA mismatch repair protein MutL [Synechococcus sp.
           JA-3-3Ab]
          Length = 583

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/598 (24%), Positives = 267/598 (44%), Gaps = 73/598 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L+ + I Q+AAGE+I+    A++EL+EN+LDA+++R++  I    +   ++ DNG 
Sbjct: 3   KIQPLNPERIAQMAAGEVIDSLGAALRELLENALDAQATRIQVEIW-PSRWQVRVADNGQ 61

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+ + E+    +RH TSK+        + GFRGEAL S+  +  LT+ +R   +  G   
Sbjct: 62  GIPASELEQVARRHTTSKLDG-----CSLGFRGEALHSLARLGSLTIQTRHADDAHGWLA 116

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
               + +++  +P A   GT+V V DLF   P R   L   +        +++  A+A+P
Sbjct: 117 TYDRQGELAHQQPAATALGTVVTVADLFADWPLRRCSLPQTRPLL----TLVQNAALAHP 172

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VS+           +       +  + + QV+ +  +++      +  +   +   G+P
Sbjct: 173 WVSWQVRQEGQLLLSLW---PGQSLQDLLLQVLPQVDLSDLRYQRIQEGDSDWEVVLGLP 229

Query: 241 -TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +R   +   V +NGR VQ       I++ +  T+P  RYP+VV+ L + P QVD N 
Sbjct: 230 DRLHRPRPDWIRVAVNGRFVQMPEWQRLIQSVFQHTLPRHRYPLVVVHLRLPPEQVDWNR 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +  ++P I +  + Q +   +       S      + +S  +     T  PK  
Sbjct: 290 HPAKSELYLQDPEIRQEQLRQHLHALLQSGSEQASRRSLHLIRASEAKSVYRVTSSPKSP 349

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
               + Q    L                                     A AQ+++ YI+
Sbjct: 350 DPAPSGQPSTPLPP---------------------------------LKALAQLYRTYIL 376

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++   GL +V+QH AHER+ +E +++ +   ++    +L                   E 
Sbjct: 377 AEHPQGLWLVEQHLAHERVRYEYIQRHWQPVELQMPVMLEGLSSQA-----------VEQ 425

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQL---LRDIIDEIIDSSTTYTLQDRIENI 536
           L +LG++ E FGPN   +R +P  L  ++  ++   LR++           +    +E  
Sbjct: 426 LEQLGLEPEPFGPNTYLMRRLPLALWSEDPEEVQGSLREL-----------SRCADLEAA 474

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +AC G++R+G  +   +M +LL   ++  N   C HGRP ++ L   D+ + F R
Sbjct: 475 QVAVACRGALRNGIPLTLEQMQQLLEAWQRTANPHTCPHGRPVYLALAEKDLARYFRR 532


>gi|261254059|ref|ZP_05946632.1| DNA mismatch repair protein MutL [Vibrio orientalis CIP 102891]
 gi|260937450|gb|EEX93439.1| DNA mismatch repair protein MutL [Vibrio orientalis CIP 102891]
          Length = 647

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/558 (26%), Positives = 249/558 (44%), Gaps = 59/558 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  KGIVKDELGLALSRHATSKIHTLDDLEAIISLGFRGEALASISSVSRLTMTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G ++    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGREMQVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T+    +RI+ V G  F+ + +++  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKLIKQYRAAKTDAQAEKRIAAVCGSAFVRHMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TAPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS------------------TSSVLSK 339
           NVHPAK  +RF    ++ +FI Q++  A+ +                      + +   +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALAQSAHIDKPEQTASAFHIEPAHTESEAAPVE 360

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND------------------- 380
                  Q+      +P Y   +   Q +  L+E+R  +                     
Sbjct: 361 SSPQVSSQEYQAIESVPSYPGKVDYQQSRDNLRESRPRSEWNESRPTSKPRVTERYSEPA 420

Query: 381 ------LLPSDDPTYSEDNDPVEESEATHYQL-----------GIACAQIHQNYIISQTT 423
                  +  +     E +    E                   G A   +  +Y++    
Sbjct: 421 PSQREVKVYQELMQTPECDPIQAEQPKQEKITEQAPLPVVEDLGKAMHVVQGHYLVMGGK 480

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            G  +V    A    +  ++    +   + SQ LL P  + L E       + +  L   
Sbjct: 481 TGTCLVSLAKAEWLRVNGQL--ATHRGSLKSQPLLVPLALKLDEELLNTASKLEPVLKVF 538

Query: 484 GIKAERFGPNAIAIREIP 501
           GI+ +  G  A+ I  +P
Sbjct: 539 GIELKARGSKALMIMGVP 556


>gi|153820288|ref|ZP_01972955.1| DNA mismatch repair protein MutL [Vibrio cholerae NCTC 8457]
 gi|126509170|gb|EAZ71764.1| DNA mismatch repair protein MutL [Vibrio cholerae NCTC 8457]
          Length = 396

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/398 (32%), Positives = 215/398 (54%), Gaps = 6/398 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  +  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDLEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++ + ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRVDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +++    +FH  +  +   P 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQGAQVMAPTINE---GAFHLPHCAEEVNPP 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
               +  TQ++   Q  + + +    +      +++D 
Sbjct: 358 VVPMIDTTQQERVWQAVQNTPDYPRKAPRDNDRDESDN 395


>gi|254509325|ref|ZP_05121415.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus 16]
 gi|219547754|gb|EED24789.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus 16]
          Length = 652

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 247/563 (43%), Gaps = 64/563 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP      
Sbjct: 61  KGIVKDELGLALSRHATSKIHTLDDLEAIISLGFRGEALASISSVARLTMTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G +++   +P A   GT VEV DLFF  PAR  FL++E+ E + I ++I+R+A+
Sbjct: 121 WSAYTEGREMAVKLQPTAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFSHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ N +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIKQYRAAKTEVQAEKRIATVCGSAFVRNMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLKPEQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI--------------- 342
           NVHPAK  +RF    ++ +FI Q++  A+ +        ++                   
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALAQSAHIDKPEITASAFHTQEPLNDADKGLTS 360

Query: 343 ------------------------------------SSFHQDNAPKTHLPKYATSLTNTQ 366
                                               +S   +       P  A S     
Sbjct: 361 EPTHQPVSERVYDAVDKIPSYPGRSDYNERRSEVREASVRSEWIESKPQPNKAKSSERYA 420

Query: 367 EKLFLQENRLSTNDLLPSDD--------PTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           E    ++   +  +LL + D               +      A    LG A       Y+
Sbjct: 421 EPAPSKQEVRAYQELLKTPDLEPISAPVGQDRNAEENESSPAAVVDSLGKAICMASGRYV 480

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
                 G+ +V+   A    +  ++     +  + SQ LL P  + L   +  +    + 
Sbjct: 481 AMGNKQGVHLVNLAKAEWLRVNGQL--STRNGSLKSQPLLVPLSLKLDPEQIQVAERLET 538

Query: 479 DLHRLGIKAERFGPNAIAIREIP 501
            L   GI+ ++    A+ +  +P
Sbjct: 539 LLLTFGIELKKRNHQAMMVMGVP 561


>gi|269137708|ref|YP_003294408.1| DNA mismatch repair enzyme [Edwardsiella tarda EIB202]
 gi|267983368|gb|ACY83197.1| DNA mismatch repair enzyme [Edwardsiella tarda EIB202]
 gi|304557762|gb|ADM40426.1| DNA mismatch repair protein MutL [Edwardsiella tarda FL6-60]
          Length = 639

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/627 (25%), Positives = 268/627 (42%), Gaps = 72/627 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  SGIGKAELALALARHATSKISTLDDLEAIVSLGFRGEALASISSVSRLTMTSRPEGQAEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +V+P A   GT +EV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGREMAVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFAHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   ++ T         +            R+  + G  F+ +A+ L  + +++ + G+ 
Sbjct: 181 ARFDITLTLQHNGKTVRQYRAVREGDARERRLGAICGTAFVQHALALAWRHDDLAIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R      Y ++NGR ++D+ I   IR AY + +     P  VL LEIDPRQVDV
Sbjct: 241 AAPQAIRQIGELQYCYVNGRMMRDRLITHAIRQAYQDRLSDELPPAYVLYLEIDPRQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +  ++++             D  P+    +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVVDVLQQAQVASAQDDPTLATPGAALDEGPRGVENR 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTY---------------------------- 389
            +                        +                                 
Sbjct: 361 ASAGENRFNRPASSPIASAPRPAHAAAPRMPAGDIFRRREGELYQRLLAASPTPAGETDS 420

Query: 390 ----------------SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
                           +       E  A    LG           +++   G+ +V    
Sbjct: 421 AFVAAPSAPLPAAEPPAVAVSTAAERAAPGDSLGRVLTLCADGVALTECRRGVALVSLSY 480

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A   L+  +++       + +Q LL P  + L   E   +      L ++GI+ +    +
Sbjct: 481 ARRCLLRAQLQPS--DEGLKAQPLLVPLRLTLEAAERQALQAQQPLLQQMGIRLQPERQH 538

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA------CYGSIR 547
           A  +  +P  L ++N+P+L+  ++  +  +              A++A       + +  
Sbjct: 539 A-QLHAVPLPLRQQNLPRLIPQMLRYLATAPACD---------AASLADWLAVHWHSADE 588

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +       +  +LL ++E+      C 
Sbjct: 589 A--PWTVAQAVQLLADLERL-----CP 608


>gi|157838229|pdb|1B62|A Chain A, Mutl Complexed With Adp
          Length = 355

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/348 (36%), Positives = 195/348 (56%), Gaps = 4/348 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 7   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 66

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 67  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 126

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 127 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 187 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 246

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 247 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 306

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   + 
Sbjct: 307 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAP 354


>gi|224534215|ref|ZP_03674793.1| DNA mismatch repair protein MutL [Borrelia spielmanii A14S]
 gi|224514317|gb|EEF84633.1| DNA mismatch repair protein MutL [Borrelia spielmanii A14S]
          Length = 611

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/623 (25%), Positives = 279/623 (44%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIHKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISQEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTNNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI I        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEIENGIEKCFKKQPPINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN  ++  ++   I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFKVLKKEHENIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   +++ +  G +P+  L LEI+P  VD N
Sbjct: 238 PANFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSKILSPGNFPICYLFLEINPEYVDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---FHQDNAPKTHL 355
           VHP K  +RF N   +   I  +I    +K   S + V+ K+ ++      +      + 
Sbjct: 298 VHPQKKEVRFFNLPFLFKLISDNINNFFDKDLNSYNDVIIKRQLTDDDHLIEMINQSENF 357

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA-------------- 401
            K  T   +  + L ++EN    N  +  +D    + N  ++   +              
Sbjct: 358 NKNNTYNISQNKNLEIEENINELNKNIIQNDVGLKKYNSIIQNRPSLKENITNIFSDTFL 417

Query: 402 ----------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                               QI   ++I +  + +  +DQHA HE++I+E++R   NS K
Sbjct: 418 EFEEQPNKNEQEEIQFNYIGQIFSEFLIVEKVNEIYFIDQHAVHEKIIYEQLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E   + +    +I    E+  ++ I   + GP    +  IP I ++     
Sbjct: 475 TVQKLLIPIEFTIVDKNIEKIIDSEIEEYKKMDITISKIGPEKYQLESIPNICNQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + I     S  + T+     ++ AT+AC  ++++   +       L+ E  K     
Sbjct: 532 ---NTIIHFFQSRKSRTIDSLESDLYATIACRKAVKTNDILSVEFSKFLINEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYFKISKFELEKKVDR 610


>gi|220909071|ref|YP_002484382.1| DNA mismatch repair protein [Cyanothece sp. PCC 7425]
 gi|219865682|gb|ACL46021.1| DNA mismatch repair protein MutL [Cyanothece sp. PCC 7425]
          Length = 575

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/620 (24%), Positives = 279/620 (45%), Gaps = 84/620 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDN 59
            IR L   +++ IAAGE+I+     ++EL+EN+LDA+++R+   +     G    Q+ DN
Sbjct: 3   TIRPLPTDLVHLIAAGEVIDSLVAVVRELVENALDAKATRIVITLCPEAWG---IQVADN 59

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM   ++  A   H TSKI+  +D + I T GFRG+AL S+  +  L + SR  Q+  
Sbjct: 60  GCGMALADLQQAAAPHTTSKITRLEDLNQIRTLGFRGQALHSLAQLGQLEICSRSSQDAE 119

Query: 118 GAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           G +    +  ++  ++ +A++ GT V V  LF   P R   L    V+   +  +I +MA
Sbjct: 120 GWRVTYNNRGEVEQLQAIALSIGTTVTVNALFAAWPGRRQSLPPLAVQLRAVQTLISQMA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFP---ERISQVIGEDFINNAVELNE-----KS 228
           + +P+V++     K+          NG         +    +D +   + + +     + 
Sbjct: 180 LCHPQVTWQVFQTKTQMGANLPNRVNGAQRPWFSLAAAKSAKDILLQVLPMLQPGDVGEL 239

Query: 229 NEITLQGYTGIP-TFNRGNANQFYVFINGRTVQ-------------DKFILSTIRTAYAE 274
           ++  L+   G+P   +R   +   + +NGR V                 +  TI  A+  
Sbjct: 240 HQDHLELLIGLPERVHRHRPDWIQLAVNGRCVNICTREGQPADVQPLTSLEQTILQAFHR 299

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           T+P  R+P+  +  ++ P QVD N HP K+ I        +  +  ++ +A+     +T 
Sbjct: 300 TLPRHRFPICFVHFKVPPDQVDWNRHPGKTEIYLDQLEFWQRQLQSALSQALGMTVNATL 359

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           +  +++ + +   + +   HL +   S++   E L                         
Sbjct: 360 AEPARQFLKAAEAEGS--YHLSRSLQSVSANPEPLPAG---------------------- 395

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                    +    A AQ+HQ YI+++   GL +V+QH AHER+++E++ Q +    + +
Sbjct: 396 ---------WMALRAVAQVHQMYILAEHPTGLWLVEQHIAHERVLYEQLLQHWQIVDLET 446

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
             +L             L     E L +L ++ E FG +  A+R  PA+L+++      +
Sbjct: 447 PLIL-----------NQLSPAQVERLEQLNLEIEPFGVDLWAVRSAPALLAQR------Q 489

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           D    +++ S    L      I+AT AC  +IR+G  +   EM  LL + ++  +   C 
Sbjct: 490 DCGAALLELSLGEDLNA---AIVAT-ACRSAIRNGTPLSLEEMQNLLEQWQRTHHPRTCP 545

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP ++ L+ + + + F R
Sbjct: 546 HGRPIYLPLEETTLSRYFRR 565


>gi|224531620|ref|ZP_03672252.1| DNA mismatch repair protein MutL [Borrelia valaisiana VS116]
 gi|224511085|gb|EEF81491.1| DNA mismatch repair protein MutL [Borrelia valaisiana VS116]
          Length = 611

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/623 (24%), Positives = 274/623 (43%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIHKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISQEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTGNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++   I L+ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIDNNKFRILKKEHENIKLEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PANFSKKSKRHIKTFVNRRPIDQKDLLEAILNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH---QDNAPKTHL 355
           VHP K  +RF N   +   I  +I    NK   + + ++ K+ ++  H   +  +   + 
Sbjct: 298 VHPQKKEVRFFNLPFLFKLISDNINNFFNKDINNYNDIIIKRQLTEDHNLIEMMSQPENF 357

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE------------------ 397
            K  T      + L  ++N    N  +  +D      N  ++                  
Sbjct: 358 NKTDTYDVPQNKNLETEDNINEPNKNIIQNDINLIRYNSIIQNRPSLKENITNIFSDNFL 417

Query: 398 ------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                               Q+   ++I +  + +  +DQHA HE++I+E++R   NS K
Sbjct: 418 EFEELTNKPEKEEIKFNYIGQVLSEFLIVEKVNEIYFIDQHAVHEKIIYEQLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E     +    ++    E+  ++ I   + GP    +  IP I ++     
Sbjct: 475 TVQKLLIPIEFTIADKNTEEIVDSEIEEYKKMDIIISKIGPRKYQLESIPNICNQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + +     S  + T+     ++ AT+AC  ++++   +       L+ E  K     
Sbjct: 532 ---NTLIHFFQSRRSRTINSLESDLYATIACRKAVKTNDILSVEFSKFLINEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYYKISKFELEKKVDR 610


>gi|5107506|pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
           Coli Dna Mismatch Repair Protein Mutl
 gi|5107507|pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
           Coli Dna Mismatch Repair Protein Mutl
          Length = 352

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/348 (36%), Positives = 195/348 (56%), Gaps = 4/348 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 4   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 63

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 64  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 123

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 124 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 183

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 184 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 243

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 244 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VNVHPAK  +RF    ++ +FI Q +   + ++  +   +  +   + 
Sbjct: 304 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAP 351


>gi|219685877|ref|ZP_03540683.1| DNA mismatch repair protein MutL [Borrelia garinii Far04]
 gi|219672576|gb|EED29609.1| DNA mismatch repair protein MutL [Borrelia garinii Far04]
          Length = 611

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/623 (24%), Positives = 273/623 (43%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIHKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTGNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIKKCFKKQPAINGTIVNVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN  ++  ++   I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFKVLKKEHENIKIELFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  I  G +P+  L LEI+P  +D N
Sbjct: 238 PANFSKKSKRYIKTFVNRRPIDQKDLLEAITNGHSRIISPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   + + ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFFNLPFLFKLISDNINNFFDKDINNYNEIVIKRQLTDDDNLIEMINQPKTL 357

Query: 357 KYATSLTNTQEKLFLQE-------------------------NRLSTNDLLPSDDPTYSE 391
               +   TQ K    E                         NR S  + + +       
Sbjct: 358 NQTNTYNITQNKNLETEHTVNELSKNIIQNDIGLKRYNSIIQNRPSFKENITNIFSDDFL 417

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
             + ++              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K
Sbjct: 418 AFEELQNKNEKEEIKFNYIGQIFSEFLIVEKVNEIYFIDQHAVHEKIIYEKLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E   + +    +I    E+  ++ I   + GP    +  IP I ++     
Sbjct: 475 TVQKLLIPIEFTIVDKNIEEIIDSEIEEYKKMDIIISKIGPKKYQLESIPNICNQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + +     S  + T+     ++ AT+AC  ++++   +       L+ E  K     
Sbjct: 532 ---NTLINFFQSRKSRTINSLESDLYATIACRKAVKTNDILSLEFSKFLIDEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYYKISKFELEKKVAR 610


>gi|262364457|gb|ACY61014.1| DNA mismatch repair protein [Yersinia pestis D182038]
          Length = 361

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/335 (34%), Positives = 190/335 (56%), Gaps = 3/335 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L SR  + +  
Sbjct: 61  CGISKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLILTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +++P A   G+ +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   +       +            R++ + G  F+ +A+ +  +  ++ + G+ 
Sbjct: 181 ARFDVAINLNHNGKLIRQYRAAPDPAQHERRLASICGPAFLQHALAIAWQHGDLNIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   +   Y ++N R ++D+ I   IR AY + +   + P  VL L+IDP QVDV
Sbjct: 241 ADPAASHTLSEMQYCYVNNRMMRDRLINHAIRQAYQDRLNDAQQPAYVLYLDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           NVHPAK  +RF    ++ +FI Q++   + +    
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQAVTAVLQQTNAP 335


>gi|312149018|gb|ADQ29089.1| DNA mismatch repair protein MutL [Borrelia burgdorferi N40]
          Length = 610

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 271/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PNNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +  +++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQNIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNINLRRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDGEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|320335095|ref|YP_004171806.1| DNA mismatch repair protein mutL [Deinococcus maricopensis DSM
           21211]
 gi|319756384|gb|ADV68141.1| DNA mismatch repair protein mutL [Deinococcus maricopensis DSM
           21211]
          Length = 556

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/595 (25%), Positives = 258/595 (43%), Gaps = 69/595 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   +  QIAAGE++ RP   ++EL++N+LDA ++R+E  + GGG    ++ DNG
Sbjct: 1   MTIRILPPDVARQIAAGEVVSRPLDVVRELLDNALDAGATRIEVEVEGGGLRAVRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            G+ + E+P+A  RH TSK+ +    + T GFRGEAL ++     LTL +RP       +
Sbjct: 61  AGIPAGEVPLAPLRHATSKL-EAVDRVTTLGFRGEALWAMSQAGTLTLTTRPAAQVGATE 119

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +    + +  VR V+   GT V V DLF  +PAR     S   E   IT ++ R  + +P
Sbjct: 120 LVACADDV-QVRRVSAPAGTSVAVTDLFAHLPARRRTQASAATEAREITGLVTRYVLHHP 178

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +S+  +       ++  Q   G+    ++ V G    N  V ++       + G    P
Sbjct: 179 GLSWRLTVDG----EVRVQHAPGDARAAVASVYGSLSANRVVRVDAT----GVTGVISRP 230

Query: 241 TFNRGNANQFYVFINGRTVQDKFI-LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              R   ++ +V +NGR V         I   Y E +P    P+ VL + + P  V+ NV
Sbjct: 231 ELTRARRDRMHVSVNGRPVLAPPELERAIIHGYGELLPGSLAPLCVLDVRVPPEDVNPNV 290

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +   +   +   + ++++ A+ +  ++ +    +       +  A     P   
Sbjct: 291 HPAKAVVALADVDGVARRVTEAVRAALAQHPLARALPDLRLPQPPAPRAAAADGTFPP-- 348

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                                                                    Y++
Sbjct: 349 -----------------------------------------------LTFSGVFAGLYLL 361

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++    L +VD HAAHER+++E++   F++ +        PE++ L   + A +   + D
Sbjct: 362 AEGDGDLWVVDAHAAHERVLYERLSAAFDAAEAFELP--EPELLQLTPEQAARLAGTEAD 419

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G+  E FG     +R +PA L+   +P+L   +I+  + +       D    +LA 
Sbjct: 420 LRAFGLHVEAFGAGLARLRALPAALAHLPVPRLHEQVIEAALGT------HDPRREVLAR 473

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  ++++G  +       LL E+        C HGRPT ++L   D+   FGR
Sbjct: 474 LACAPALKAGM-LTEERGPSLLAELAGCAQPWACPHGRPTVLRLSERDLAHAFGR 527


>gi|213583595|ref|ZP_03365421.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 452

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 200/372 (53%), Gaps = 4/372 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +T  +           +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRN 360

Query: 357 KYATSLTNTQEK 368
            +A     T  +
Sbjct: 361 HFAVPAEPTAAR 372


>gi|15594556|ref|NP_212345.1| DNA mismatch repair protein (mutL) [Borrelia burgdorferi B31]
 gi|216264252|ref|ZP_03436244.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 156a]
 gi|223889249|ref|ZP_03623837.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 64b]
 gi|8928214|sp|O51229|MUTL_BORBU RecName: Full=DNA mismatch repair protein mutL
 gi|2688099|gb|AAC66594.1| DNA mismatch repair protein (mutL) [Borrelia burgdorferi B31]
 gi|215980725|gb|EEC21532.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 156a]
 gi|223885282|gb|EEF56384.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 64b]
          Length = 610

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 270/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPPNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|219684595|ref|ZP_03539538.1| DNA mismatch repair protein MutL [Borrelia garinii PBr]
 gi|219671957|gb|EED29011.1| DNA mismatch repair protein MutL [Borrelia garinii PBr]
          Length = 611

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/623 (24%), Positives = 273/623 (43%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIHKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTGNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIKKCFKKQPAINGTIVNVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN  ++  ++   I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFKVLKKEHENIKIELFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  I  G +P+  L LEI+P  +D N
Sbjct: 238 PANFSKKSKRYIKTFVNRRPIDQKDLLEAITNGHSRIISPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--------FHQDNA 350
           VHP K  +RF N   +   I  +I    +K   + + ++ K+ ++             N 
Sbjct: 298 VHPQKKEVRFFNLPFLFKLISDNINNFFDKDINNYNEIVIKRQLTDDDNLIKIINQPKNL 357

Query: 351 PKTHLPKYATSLTNTQEKLFLQ-------------------ENRLSTNDLLPSDDPTYSE 391
            +T+      +     E    +                   +NR S  + + +       
Sbjct: 358 NQTNTYDITQNKNLETEHTVNELSKNIIQNDIGLKRYNSIIQNRPSFKENITNIFSDDFL 417

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
             +  +              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K
Sbjct: 418 AFEEPQNKNEKEEIKFNYIGQIFSEFLIVEKVNEIYFIDQHAVHEKIIYEKLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E   + +    +I    E+  ++ I   + GP    +  IP I ++     
Sbjct: 475 TVQKLLIPIEFTIVDKNIEEIIDSEIEEYKKMDIIISKIGPKKYQLESIPNICNQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + +     S  + T+     ++ AT+AC  ++++   +       L+ E  K     
Sbjct: 532 ---NTLINFFQSRKSRTINSLESDLYATIACRKAVKTNDILSLEFSKFLIDEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYYKISKFELEKKVAR 610


>gi|225548557|ref|ZP_03769605.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 94a]
 gi|225370820|gb|EEH00255.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 94a]
          Length = 610

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 270/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLKRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|269967709|ref|ZP_06181758.1| DNA mismatch repair protein [Vibrio alginolyticus 40B]
 gi|269827687|gb|EEZ81972.1| DNA mismatch repair protein [Vibrio alginolyticus 40B]
          Length = 670

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/397 (31%), Positives = 207/397 (52%), Gaps = 6/397 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLKPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +           +RI+ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKIIRQYRAAKNQLQTEKRIAAVCGNAFVRHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGAKQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+ +  +     +++   S+FH+    ++   +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALTDALAQSAVIDKPQVNE---SAFHRVEPTESEEIE 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           ++    N QE             +  +       D +
Sbjct: 358 HSPEPENVQEPASSPVPERVYQAIESTPAYPGRSDYE 394


>gi|262045400|ref|ZP_06018423.1| DNA mismatch repair protein MutL [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037229|gb|EEW38477.1| DNA mismatch repair protein MutL [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 410

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 200/372 (53%), Gaps = 4/372 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  SGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVARLTLTSRTAEQQEA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q      ++  +V+P A   GT +EV DLF+  PAR  F+++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDQAVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+ +A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTINLSHNGKVMRQYRAVAQDGQRERRLGTICGAAFLEHALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 AEPLHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHPAK  +RF    ++ +FI Q +   + ++  +  +            +N       
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLDAPLAEKDDPPAPRPMPENRIAAGGN 360

Query: 357 KYATSLTNTQEK 368
           ++A      +  
Sbjct: 361 QFARPAEAREPA 372


>gi|226320952|ref|ZP_03796500.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 29805]
 gi|226233654|gb|EEH32387.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 29805]
          Length = 610

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/622 (24%), Positives = 268/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------SFHQDNAPK 352
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++               
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG----- 407
             +  Y     N  E   + E   +T           S   +     E            
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPSKNTTQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDGEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSTEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|224532858|ref|ZP_03673473.1| DNA mismatch repair protein MutL [Borrelia burgdorferi WI91-23]
 gi|224512247|gb|EEF82633.1| DNA mismatch repair protein MutL [Borrelia burgdorferi WI91-23]
          Length = 610

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 269/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GINKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNTLETEDVNEPNKNTTQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|312148297|gb|ADQ30956.1| DNA mismatch repair protein MutL [Borrelia burgdorferi JD1]
          Length = 610

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 149/622 (23%), Positives = 269/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +       TIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINRTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLKRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|33151911|ref|NP_873264.1| DNA mismatch repair protein [Haemophilus ducreyi 35000HP]
 gi|71151978|sp|Q7VN43|MUTL_HAEDU RecName: Full=DNA mismatch repair protein mutL
 gi|33148132|gb|AAP95653.1| DNA mismatch repair protein MutL [Haemophilus ducreyi 35000HP]
          Length = 598

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/528 (27%), Positives = 254/528 (48%), Gaps = 35/528 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    ++ DNG G
Sbjct: 6   IHILPPQLANQIAAGEVVERPASVVKELVENSLDAGANHIQIDIEKGGAQLIRLRDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKI+   D   I + GFRGEAL SI +VS LTL SR        Q
Sbjct: 66  IAKQDLTLALTRHATSKIATLADLEMILSLGFRGEALASISSVSRLTLTSRTANQTEAWQ 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G +++  ++P +   GT +EV +LFF  PAR  FL++++ E N I +V+RR+A+A 
Sbjct: 126 AYTQGREMNVEIQPASHPVGTTIEVANLFFNTPARRKFLRTDKTEFNHIDEVVRRIALAK 185

Query: 180 PKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P +SFT +       +       +     +R++ + G  F+  A  +  +  ++ L G+ 
Sbjct: 186 PTISFTLTHNGKIIRQYRKVADQSVAQQQKRVAAICGNHFLQQATHIEWQHGDLHLYGWV 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   +  Y ++NGR ++DK I   +R AYAE IP G  P  +L L+++P ++DV
Sbjct: 246 SSPQLARPQNDLSYSYVNGRVMRDKIINHAVRQAYAELIPTGDQPAFILFLDLNPTELDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-------------SS 344
           NVHPAK  +RF    +I  FI+Q +Q A+  +   T +      +             ++
Sbjct: 306 NVHPAKHEVRFHQARLIHGFILQGVQNALQAQLALTPTDNQTDSVAETKACYTADNNRAA 365

Query: 345 FHQDNAPKTHLPKYA---TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED-----NDPV 396
              +    T  P+Y+      T T ++ + +      ND        Y+E         +
Sbjct: 366 AGSNIFSSTPYPRYSGATNRPTKTAQQCYAELINTDKNDNANVAPIIYAEPLTTQATPAI 425

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            E+   +       A +    ++ +  +   +V            +++   +  +  SQ 
Sbjct: 426 TETADPYPHHSQVLALVENKALLLKEQEHFYVVPLK------KLAQLQLTLSLAEKKSQP 479

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAER---FGPNAIAIREIP 501
           LL P  + L + +     ++   L   G + ++    G   ++I  +P
Sbjct: 480 LLIPLSLSLDQAQAERWQQYQAQLLDSGFEIKQKHWQGQTRLSIIAVP 527


>gi|212633661|ref|YP_002310186.1| DNA mismatch repair protein [Shewanella piezotolerans WP3]
 gi|226723041|sp|B8CIX3|MUTL_SHEPW RecName: Full=DNA mismatch repair protein mutL
 gi|212555145|gb|ACJ27599.1| DNA mismatch repair protein [Shewanella piezotolerans WP3]
          Length = 620

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/562 (28%), Positives = 261/562 (46%), Gaps = 46/562 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MAIEKLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIDKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           FG+  +++ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 61  FGIPKQDLSLALSRHATSKLKSLDDLEAIMSFGFRGEALASISSVSRLTLTSRTETQAEA 120

Query: 119 AQIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++    P A   GT +E  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAKAEGTEMAVQILPAAHPVGTTIEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT      +        T   + +R+ QV G+ F    + ++   N++TL GY 
Sbjct: 181 VRRDIHFTLKHNGKSVRNYRPAMTEIQYLQRLGQVCGKAFAETCLHISCSHNDLTLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P    G     Y ++NGR V+D+ +   +R A++E    G  P  VL+LE+DP QVDV
Sbjct: 241 QAPGAASGYCETQYFYVNGRLVKDRLVNHAVRQAFSEY-AAGVSPGYVLMLELDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK---GISTSSVLSKKMISSFHQDN----- 349
           NVHPAK  +RF     + ++I+Q++Q A+ +    G+      + +  ++F  ++     
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYILQALQSAMAQSSELGLEAQPEPTDESGAAFESNSTNSNV 359

Query: 350 -------------------------APKTHLPKYATSLTNTQEKLFLQENRLSTND---- 380
                                    +       Y T L     +  ++    S+ +    
Sbjct: 360 SSTSYSEPNTKPVAVNERPLTTTATSYNQGQSSYRTPLRPATHRADVELPSQSSLEAYAS 419

Query: 381 -LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            L  S     S        + A         A +   Y +    D + ++   A   +  
Sbjct: 420 LLSRSSAEPASGKVVSNPHASAVSDASVKMPAVLADKYWVIVEEDSIRLLSI-ADVIKET 478

Query: 440 FEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNAIAIR 498
             +  Q   +  +  Q LL P  + + +    +I   +  L +LGI+   R G   + I+
Sbjct: 479 ARQQIQAKLAQGLVGQPLLMPVAVPVDDNWNEVIETREILLRKLGIELSIRLGQ--LIIK 536

Query: 499 EIPAILSKKNIPQLLRDIIDEI 520
           ++P  L    +  L+ +++  I
Sbjct: 537 KVPPYLRDSQLAVLIPELLQWI 558


>gi|225551982|ref|ZP_03772922.1| DNA mismatch repair protein MutL [Borrelia sp. SV1]
 gi|225370980|gb|EEH00410.1| DNA mismatch repair protein MutL [Borrelia sp. SV1]
          Length = 611

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/623 (24%), Positives = 276/623 (44%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIHKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   +   +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHRRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS--------------- 343
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++               
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 344 ------SFHQDNAPKTHLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSE 391
                    Q+N  +T       +   TQ  + L+      +NR +  + + +       
Sbjct: 358 NEIKTYDIPQNNNLETEGNVSEPNKNITQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFL 417

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
           +++                 QI   ++I +  + +  +DQHA HE++I+EK+R   NS K
Sbjct: 418 ESEEPPNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           I  + L+  E   + +    +I    E+  ++ I   + G     +  IP I S+     
Sbjct: 475 IVQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGSKKYQLESIPNICSQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + +     S  + T+     ++ AT+AC  +++    +       L+ E  K     
Sbjct: 532 ---NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSVEFSKFLINEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYYKISKFELEKKVDR 610


>gi|269961400|ref|ZP_06175764.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833777|gb|EEZ87872.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 672

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 201/381 (52%), Gaps = 9/381 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  KGIVKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTMTSRPAAQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMKVKLQPTAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKMIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLKPDQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK------KGISTSSVLSKKMISSFHQDNAP 351
           NVHPAK  +RF    ++ +FI Q++  A+ +        ++ S+      + SF    A 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPHVNESAFHHADPVESFEASTAN 360

Query: 352 KTHLPKYATSLTNTQEKLFLQ 372
           +  +     + +   E ++  
Sbjct: 361 QEPVSAPEPANSPVPEHVYQA 381


>gi|325474471|gb|EGC77658.1| DNA mismatch repair protein [Treponema denticola F0402]
          Length = 606

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/619 (22%), Positives = 265/619 (42%), Gaps = 45/619 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            ++ LS++  ++IAAGE+IERP+  ++EL++NS+DA +S++   I  GG S  +++D+G 
Sbjct: 6   PVKLLSKETASKIAAGEVIERPASVVRELLDNSIDAGASQIIVEIEEGGISSIRVSDDGC 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E++ +    H TSKI  ++D  ++ + GFRGEAL S+ AVS L + S   +     
Sbjct: 66  GMTREDLELCTHTHSTSKIEEAEDLLHLRSLGFRGEALSSVQAVSSLEITS-TREGPAAW 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +++     +  + P  +N GT VEV++LF   PAR  FLK  Q E           A+ +
Sbjct: 125 KLS-----LGKISPARLNKGTTVEVKNLFENFPARKKFLKRPQYEAAQCRQTFVEKALPH 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             +   +     N+  +   S+       I+ +  ++      E+N++ +  + +   G 
Sbjct: 180 YNIEMRYIADGINKLILPAHSSLK--ERCIAAMSLKEPEELFYEINQEGDGFSFKAVLGS 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P     +    Y+F+NGR + +  ++  +  A     P G +P   + L +DP +VD N+
Sbjct: 238 PAVVCSDKRNIYIFVNGRRINEYGLVQAVCYASEGYFPNGGFPAAFVFLNVDPERVDFNI 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST----------------------SSVL 337
           HPAK   +F +   I + +  +I     +K +S                       ++ L
Sbjct: 298 HPAKREAKFEDYKEIHHSLSSTISSFYKQKTVSDLLKESYQPEYTRGFDFEKTEYEAADL 357

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDP 395
           ++    +  +             S         ++  E   +  ++  +     +   + 
Sbjct: 358 NQSYNPAGTKKYLQSNTFDYRQNSTKTYWPSSPIKQIEASTAFQEVSAAQHRLSAAAYET 417

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
               +           Q    +I  +  + L I+DQHAAHER++FE ++    S   + +
Sbjct: 418 SALPQDLPKSDFKFLGQFCGTFIAVEKNNALYIIDQHAAHERILFEGLK---KSLGPSQE 474

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            L+   I    E +  +I  +  +L + G            IR +P  +  +   + L++
Sbjct: 475 LLIPYRIETESEKDDEIIRLNLHELQKAGFNISEDKKGLWIIRAVP--IRWQGTEKDLKE 532

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
            +               + +ILA  AC  + + G  +  +    +  +    P    C H
Sbjct: 533 DLA-----GAGKDPSGLMHHILARSACRAACKDGDIIDPVSAYNIAVKTFALPEPL-CPH 586

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRP +  +  +++ K   R
Sbjct: 587 GRPLYFIIDRTELFKRIKR 605


>gi|292491935|ref|YP_003527374.1| DNA mismatch repair protein MutL [Nitrosococcus halophilus Nc4]
 gi|291580530|gb|ADE14987.1| DNA mismatch repair protein MutL [Nitrosococcus halophilus Nc4]
          Length = 527

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/596 (26%), Positives = 267/596 (44%), Gaps = 84/596 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR LS ++   IAAGE++ RP+  +KEL+EN+LD  +  V   +  GG+   Q+ D+G
Sbjct: 1   MTIRILSPQVQQCIAAGEVVARPASVLKELMENALDGGAETVRVKVQEGGRRLIQVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ + E+P+A +R  TSKI   +D + + +FGFRGEAL SI +VS L L+SR      G
Sbjct: 61  SGLAATEVPLAFERFATSKIVQMEDLAAVRSFGFRGEALGSIASVSRLRLLSREKGTLLG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +  + G ++ S++ +  + GT VEV DLF+  PAR  FL+S + E   I +   R A+A
Sbjct: 121 TEARLEGGRMLSLQEMGASVGTRVEVWDLFYNTPARQKFLRSLRTEYGHILNTFTRFALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P+  FT +      + +   +      +RI+ ++G+    +  E +   +   L G+  
Sbjct: 181 FPEKHFTLTMDGRELHVLPPATRV----DRITALLGQQAAAHLEEFHATGSWGRLGGFVI 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                    +  Y+F+N R V++  +   IR    E         V+L L+I P QVDVN
Sbjct: 237 PTEA--RGRSPLYLFVNRRPVRNVALYRAIRDGLQEAGST-----VLLFLDIHPSQVDVN 289

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK                        +        L +++ S+  Q   P     + 
Sbjct: 290 VHPAK-----------------------AEVRFRDEQALYEQVRSALKQRTLPWQTQNER 326

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                                                 EES     Q      Q+   ++
Sbjct: 327 VAE-----------------------------------EESTYGATQGFRLLGQVENTFL 351

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           ++ +   + ++DQHAA ER+++E++       K+  + L+ P+++ L   E A +  H E
Sbjct: 352 VTLSEGQIYLLDQHAAEERVLYERL----QQGKVQPRELVAPQVVTLSPEERAFVETHRE 407

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L   G   E  GP A+A+R IP  LS      +   ++           ++ + E+   
Sbjct: 408 ALESCGFVVEPLGPQALALRAIPDFLSPPQSGLIFSRLL---------PRVRSQREDFQQ 458

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++C G+I++G  +      RLL    +  +   C H RP + +L L ++ +  GR
Sbjct: 459 ALSCLGAIKAGESLAPEAQERLLNAWVQTDHPHACAHNRPVYFRLSLDEVRRKVGR 514


>gi|91227455|ref|ZP_01261819.1| DNA mismatch repair protein [Vibrio alginolyticus 12G01]
 gi|91188605|gb|EAS74896.1| DNA mismatch repair protein [Vibrio alginolyticus 12G01]
          Length = 670

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/511 (27%), Positives = 232/511 (45%), Gaps = 38/511 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLKPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +           +RI+ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKIIRQYRAAKNQLQTEKRIAAVCGNAFVRHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+++  +     +++   S+FH+    ++   +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALTDALSQSAVIDKPQVNE---SAFHRVEPTESEEIE 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           ++      QE             +  +       D +    +                  
Sbjct: 358 HSPEPEKVQEPASSPVPERVYQAIESTPAYPGRSDYEVKPRNSGPSET------------ 405

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
                          +  E  + E   R D+  +K   +   + E           +  +
Sbjct: 406 ---------------SVREARVVESFKRNDWVESKPAPKPSHSKERHVEPAPTKQEVRAY 450

Query: 477 DEDLHRLGIK---AERFGPNAIA-IREIPAI 503
            E L  L  +        P  I     +P+I
Sbjct: 451 HELLKTLEFEAQAVTPIAPQTITSHTSMPSI 481


>gi|260361486|ref|ZP_05774537.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus K5030]
 gi|308111305|gb|EFO48845.1| DNA mismatch repair protein MutL [Vibrio parahaemolyticus K5030]
          Length = 580

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 197/370 (53%), Gaps = 5/370 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLQPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVSINVRHNGKVIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPDGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH--L 355
           NVHPAK  +RF    ++ +FI Q++  A+ +  +     +++        +         
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPQVNESAFHRAEPEERESQPETT 360

Query: 356 PKYATSLTNT 365
           P+Y+    +T
Sbjct: 361 PQYSPQSVST 370


>gi|221217522|ref|ZP_03588992.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 72a]
 gi|221192585|gb|EEE18802.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 72a]
          Length = 610

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 270/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLVEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|226321529|ref|ZP_03797055.1| DNA mismatch repair protein MutL [Borrelia burgdorferi Bol26]
 gi|226232718|gb|EEH31471.1| DNA mismatch repair protein MutL [Borrelia burgdorferi Bol26]
          Length = 610

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 271/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLVEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   ++   
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQSENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPPNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|195941942|ref|ZP_03087324.1| DNA mismatch repair protein (mutL) [Borrelia burgdorferi 80a]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 270/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLVEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLKRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|225549784|ref|ZP_03770748.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 118a]
 gi|225369592|gb|EEG99041.1| DNA mismatch repair protein MutL [Borrelia burgdorferi 118a]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 270/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLVEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDNFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNGPNKNTTQSNIDLKRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|330836375|ref|YP_004411016.1| DNA mismatch repair protein mutL [Spirochaeta coccoides DSM 17374]
 gi|329748278|gb|AEC01634.1| DNA mismatch repair protein mutL [Spirochaeta coccoides DSM 17374]
          Length = 626

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/638 (23%), Positives = 272/638 (42%), Gaps = 63/638 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L   +  +IAAGE+IERPS  ++ELI+N++DA ++ +   I  GG     I DNG 
Sbjct: 6   RIKRLDPIVAQRIAAGEVIERPSSVVRELIDNAVDAGATTITVAIENGGLDLISIMDNGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  + H TSK++  DD  ++ T GFRGEAL SI A S +T+ S     +   
Sbjct: 66  GIAPDDLPLCCESHATSKVASVDDLYHLSTMGFRGEALYSIAACSRVTIASSWHGQSP-W 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +   +     P   + GT V+V  LF  IPAR NF+K    E      V+   ++A+
Sbjct: 125 SMTVDNGRKEEPVPGGPSTGTKVDVEGLFKFIPARRNFMKRASAEAASCRAVMVEKSLAF 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F      S R      +      + ++        +  +EL + +    L      
Sbjct: 185 PSIEFRLLVDDSLRVHFPVTNRKERVLDALAT-DKNLVRSETMELTDHAGRFDLYAVCST 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  R + +   V++N R ++D  ++  +   Y E +P G +P   L + +DP   D N+
Sbjct: 244 PSTFRSDRSHIKVYVNNRPIEDYALVQAVTYGYGEMLPGGSFPYCYLFISVDPELADFNI 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK------- 352
           HPAK  ++ RN   I + I++ ++  + +       ++ +   +    D  P+       
Sbjct: 304 HPAKREVKLRNKAEIHHQIVEMVRTQVRRTIPRLRGMMQEDHAADVQSDVQPELGASPRH 363

Query: 353 -------------------THLPKYATSLTNTQEKL-----------------FLQENRL 376
                                   Y+ + ++  E L                 FLQ++  
Sbjct: 364 QGERTADTHVASKHVTYGYGSASGYSPAPSSVAEALKNSGKPADFCWFEKARDFLQKSGT 423

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
           S+   + +D           E +    +       Q    ++I++    L IVDQHAAHE
Sbjct: 424 SSAVTIKADRTAADATTWIPENASEQDF---TYIGQAFSLFLIAEKDGDLYIVDQHAAHE 480

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R++++++    +  K+     + P   D+       + ++       GI+  R       
Sbjct: 481 RILYDEIVSRKDIQKL-----MVPLSFDVDGDVDEYLQQNSHLYAEYGIELTRPDERQWE 535

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           I  +PA+   K + + + D I           + +  + + A +AC+ +IR G  +  + 
Sbjct: 536 IMTMPAL--GKPVEKQVVDFISH-----HCGDMTELDKGLYAIIACHSAIRDGDTLDKMA 588

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +LR++        C HGR   ++L   ++ K  GR
Sbjct: 589 AEEILRKVFAMAEPR-CPHGRTFLVRLSQDELRKSVGR 625


>gi|224534080|ref|ZP_03674663.1| DNA mismatch repair protein MutL [Borrelia burgdorferi CA-11.2a]
 gi|224512779|gb|EEF83147.1| DNA mismatch repair protein MutL [Borrelia burgdorferi CA-11.2a]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/622 (24%), Positives = 270/622 (43%), Gaps = 44/622 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLVEGGIQKILIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GISKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN   +  ++ + I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D N
Sbjct: 238 PDKFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLP 356
           VHP K  +RF N   +   I  +I    +K   +   ++ K+ ++      +   +    
Sbjct: 298 VHPQKKEVRFYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENF 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG--------- 407
               +    Q      E+    N      +      N  ++        +G         
Sbjct: 358 NKINTYDIPQNNNLETEDVNEPNKNTTQSNIDLKRYNSIIQNRPTLRENIGNIFSDNFLE 417

Query: 408 ---------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                              QI   ++I +  + +  +DQHA HE++I+EK+R   NS K 
Sbjct: 418 FEEPLNKNEKEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKN 474

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             + L+  E   + +    +I    E+  ++ I   + GP    +  IP I S+      
Sbjct: 475 VQKLLVPIEFTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE---- 530

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             + +     S  + T+     ++ AT+AC  +++    + +     L+ E  K      
Sbjct: 531 --NTLINFFQSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKH 587

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGR  + K+   ++EK   R
Sbjct: 588 CPHGRKIYYKISKFELEKKVDR 609


>gi|156972476|ref|YP_001443383.1| DNA mismatch repair protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524070|gb|ABU69156.1| hypothetical protein VIBHAR_00096 [Vibrio harveyi ATCC BAA-1116]
          Length = 681

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 199/382 (52%), Gaps = 3/382 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  KGIVKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTMTSRPAAQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMKVKLQPTAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKMIRQYRAAKNQLQTEKRIAAVCGNAFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLKPDQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+ +  +     +++            +     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSSVIDKPHVNESAFHHADPAQPIEPFEAM 360

Query: 358 YATSLTNTQEKLFLQENRLSTN 379
            +     +  +   +  + S++
Sbjct: 361 MSAPEAASLPEPVSKPEQASSS 382



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 99/261 (37%), Gaps = 23/261 (8%)

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
             +    +           P ++  +       +++++      L T D  P  +   + 
Sbjct: 421 RPADSFRRTDWVESKPAPKPSSNREQRHAESAPSKQEVRAYHELLQTPDFEPQKEAPKAS 480

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            +   E +      L  A A + + +++  +  G  +V    A       ++    +   
Sbjct: 481 VSTSAEAALPPVTALSKALAVVDEQFVLMSSDSGAALVALPRAEFYRTKGQL--TPSDGS 538

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +Q LL P  + L      L  ++ +D  +LGI+ +     A+ +  +P+ L ++N+  
Sbjct: 539 LKAQPLLVPLSVKLEPELVELARDYQQDFAQLGIQLKARNDKALMVMGVPSPLRQQNLQN 598

Query: 512 LLRDIIDEII-----DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
           L+ D++         + +T   L + I+ +   +    +++S   +   E  +++ E+E+
Sbjct: 599 LIPDLLSYAQTRVRGEVATVQLLSELIDWLALQV---TTVKSHYTLS--EAIQIIAELEQ 653

Query: 567 NPNSSQCNHGRPTFIKLKLSD 587
                   HG     +L L D
Sbjct: 654 LR------HG-----QLPLED 663


>gi|226326650|ref|ZP_03802168.1| hypothetical protein PROPEN_00500 [Proteus penneri ATCC 35198]
 gi|225204871|gb|EEG87225.1| hypothetical protein PROPEN_00500 [Proteus penneri ATCC 35198]
          Length = 670

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/597 (25%), Positives = 258/597 (43%), Gaps = 79/597 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    +I DNG
Sbjct: 1   MAINLLPPQLANQIAAGEVVERPASVVKELLENSLDAGATSIDIDIDKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS L L SR       
Sbjct: 61  CGINRDDLKLALARHATSKISTLDDLEAIMSMGFRGEALASISSVSRLILTSRTQDQEEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +++P A   G+ VEV DLF+  PAR  FL++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDMAVTIKPAAHPVGSTVEVLDLFYNTPARRKFLRTEKTEFAHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+   +       +            R+S + G +F+N +++L+ +  ++ ++G+ 
Sbjct: 181 SRFDVTINLTHNGKRVRQYRAVKDESQQNRRLSAICGNNFVNQSMQLSWEHGDLAIKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P     ++   Y ++NGR ++D+ I   IR AY   +   + P  +L L +DP QVDV
Sbjct: 241 EHPLSPVQSSEIQYCYVNGRMMRDRLINHAIRQAYEGYLQGEQQPSYILYLSVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQ-------------------------SIQKAINKKGIS 332
           NVHPAK  +RF    ++ +FI Q                         +       + ++
Sbjct: 301 NVHPAKHEVRFHESRLVHDFIYQGVLSVLRQATQEPLSLASDDEEEHETALNFPENRQVA 360

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE----------KLFLQENRLSTNDLL 382
             +V S+   +   Q  + ++   +Y+    N+            +    E+   T   L
Sbjct: 361 GENVFSQPYQAPIAQTPSNRSSSHQYSEREHNSNSHQKQASQFGGRHQFGESYQRTQGAL 420

Query: 383 PSDDPTYS-------------------------EDNDPVEESE-------------ATHY 404
                  S                            + +EE                T Y
Sbjct: 421 YQKMMQESVSTSKDKEKIPLFPERAPLNLGEIVHTTNNIEEDTISVMPRSVNAKDGQTDY 480

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
             G   A     Y + +++ GL ++    A   L   ++        +  Q LL P  + 
Sbjct: 481 TFGRVLAIYQHKYALIESSQGLGLLSLEEADFLLKCAQLLP--KDETLKPQPLLVPLKLA 538

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           L + E ++  +    +   GI  E        I  +   L ++N+P LL  +   + 
Sbjct: 539 LSKEEISVFNQFQSLISHFGIVIE-ISHGKATIHAVSLPLRQQNLPVLLTALFAYLS 594


>gi|227357130|ref|ZP_03841499.1| DNA mismatch repair protein [Proteus mirabilis ATCC 29906]
 gi|227162662|gb|EEI47629.1| DNA mismatch repair protein [Proteus mirabilis ATCC 29906]
          Length = 669

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/418 (32%), Positives = 212/418 (50%), Gaps = 10/418 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    +I DNG
Sbjct: 1   MAINLLPPQLANQIAAGEVVERPASVVKELLENSLDAGATTIDIDIDKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGISRDDLKLALARHATSKISTLDDLEAIMSMGFRGEALASISSVSRLTLTSRTASQEEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   G+ VEV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMTVAVKPAAHPVGSTVEVLDLFYNTPARRKFLRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS   +       +            R+S + G  F++ A++L  +  ++ ++G+ 
Sbjct: 181 SRFDVSINLTHNGKRVRQYRAAKETHQHHRRLSAICGNHFVDQAMQLTWEHGDLAIKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P     ++   Y ++NGR ++D+ I   IR AY   +   + P  VL L +DP QVDV
Sbjct: 241 EHPLAPVQSSEIQYCYVNGRMMRDRLINHAIRQAYEGYLQGEQQPSYVLYLTVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-------VLSKKMISSFHQDNA 350
           NVHPAK  +RF    ++ +FI Q++   + +    T S        L+        Q   
Sbjct: 301 NVHPAKHEVRFHESRLVHDFIYQAVLSVLRQVTEDTLSLDEEDNGALTATTFPENRQVAG 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                  Y   +T++ +K      + S    L     +  +  D  +  E+     G+
Sbjct: 361 ENVFSQPYQAPVTSSTQKKSTGAYQGSAGKGLTDTQKSPQKTLDTRQFGESYQRTQGM 418


>gi|307718363|ref|YP_003873895.1| DNA mismatch repair protein MutL [Spirochaeta thermophila DSM 6192]
 gi|306532088|gb|ADN01622.1| DNA mismatch repair protein MutL [Spirochaeta thermophila DSM 6192]
          Length = 573

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/596 (24%), Positives = 264/596 (44%), Gaps = 38/596 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E +  +IAAGE+I++P+  ++EL++N+LDA +S +   IA GG     + DNG 
Sbjct: 11  RINLLEEAVFRKIAAGEVIDKPAAVVRELLDNALDAAASEITVEIAQGGMERILVLDNGE 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E++      H TSKI    D   + T GFRGEAL SI AV+   + SR     +G 
Sbjct: 71  GMVPEDVRRCYLPHATSKIRSEQDLLAVTTLGFRGEALGSIAAVATTRIASRARGTPSGY 130

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +   ++       +  GT VEV+ LF + PAR  FLK+   E  L   ++   A+ +
Sbjct: 131 FVLVDRGRLVEEGETHLPEGTRVEVQRLFSSFPARKRFLKNPSTEGLLCRRMVVEKALPF 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-KSNEITLQGYTG 238
           P+V+F F       + +       +   R+   + + F  +A E  E + + + ++G   
Sbjct: 191 PRVAFRFVKDGGMEFYLPP----QDLLARVCAALPDLFKPSASEYFEVEQDGVRMEGVLL 246

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F + +     +++N R VQ+  +   +   Y   +P G+YP  V+ + + P +VD N
Sbjct: 247 SPAFPQRDRRHIRIYLNRRLVQEFSLAQAVAYGYRGVLPGGQYPAAVIFITLPPERVDFN 306

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK   + R  + +   + +++++A+           +     +  +        P  
Sbjct: 307 VHPAKREAKIRGLSSLHALLARAVEQALKDWIGVRRIAPTPGRPETVGETERVYHPYPDP 366

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           +               R  T +L      T++   D          +      Q    ++
Sbjct: 367 S---------------RSGTGELFTGPAHTFTLPADSGPPPSPRTGEGFTYLGQAFGVFL 411

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +    L++VDQHAAHER+++ ++R   +S ++     L P    +   E A + E  E
Sbjct: 412 VVEREGTLLLVDQHAAHERILYNRLRSHPSSQEL-----LFPYAFPVDADEAARLEEARE 466

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +   LGI+          +  +PA L   + P ++   +           L+D   +  A
Sbjct: 467 ETAALGIRF-VLEEGRCTLTHLPAPL--SDAPHVVAQWL-------KGERLEDPERDAYA 516

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           T+AC G+I+ G  +  +    LL +         C HGRP ++++   ++ +   R
Sbjct: 517 TLACRGAIKEGEVVDRLTALDLLSQTFSLEEPF-CPHGRPLWVEITREELFRRIRR 571


>gi|167625542|ref|YP_001675836.1| DNA mismatch repair protein [Shewanella halifaxensis HAW-EB4]
 gi|189030412|sp|B0TU66|MUTL_SHEHH RecName: Full=DNA mismatch repair protein mutL
 gi|167355564|gb|ABZ78177.1| DNA mismatch repair protein MutL [Shewanella halifaxensis HAW-EB4]
          Length = 637

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/578 (27%), Positives = 264/578 (45%), Gaps = 60/578 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MAIEKLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIEKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   ++ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS L L SR  +    
Sbjct: 61  SGIPKADLCLALSRHATSKLKSLDDLEAILSFGFRGEALASISSVSRLILTSRTAEQAEA 120

Query: 119 AQIAISGEKISSVR-PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++    P A   G+ VE  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAHAEGTEMAVKVLPAAHPVGSTVEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   + FT              +T   + +R++ V G+ F    + +  + N+++L GY 
Sbjct: 181 ARRDIHFTLKHNGKTVRNYRPANTESQYIQRLALVCGKAFAETCLRIECQHNDLSLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P+   G +   Y ++NGR V+D+ +   +R A+A+    G  P  VL+L++DP QVDV
Sbjct: 241 QSPSSANGYSETQYFYVNGRLVKDRLVNHAVRQAFAQY-AEGVSPGYVLMLDLDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHL 355
           NVHPAK  +RF     + +FI+Q++Q AI++      +   +   S   Q          
Sbjct: 300 NVHPAKHEVRFHQSRYVHDFILQALQSAISQSMELALNNEPEIQQSPDRQVSPTRGAVTA 359

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND--------------------- 394
           P Y+ S+       +   +  S  +       + S  +                      
Sbjct: 360 PLYSESIERKPSVSYDVRDSHSVTNQRDYSSGSSSYRSPLKPSARNGDVSLPSQSSIRAY 419

Query: 395 ----PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH-------ERLIFEK- 442
                 + S     ++       +     +   +GL   + HAA        E  +  + 
Sbjct: 420 GELLSTQSSSTHSDRVLSTQQNNYAVRSPAGNQNGLAASNSHAASMPAVIAGEFWVLVRD 479

Query: 443 ---------------MRQDFN---STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
                          ++ +     S  +  Q LL P  + + +   A+I   ++ L +LG
Sbjct: 480 DKISLLSISMVARAVLKAEIAAKFSQGLVGQPLLMPVAVAVDDDWLAIIENREQLLRKLG 539

Query: 485 IKAE-RFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
           I+   R G   + I+++P  L    +  L+ +++  I 
Sbjct: 540 IELSIRLGQ--LIIKKVPPYLRNSQLAVLIPELLQWIQ 575


>gi|127511498|ref|YP_001092695.1| DNA mismatch repair protein MutL [Shewanella loihica PV-4]
 gi|189030413|sp|A3QAD8|MUTL_SHELP RecName: Full=DNA mismatch repair protein mutL
 gi|126636793|gb|ABO22436.1| DNA mismatch repair protein MutL [Shewanella loihica PV-4]
          Length = 631

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/582 (27%), Positives = 265/582 (45%), Gaps = 56/582 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +ITDNG
Sbjct: 1   MTIRILPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIEIDKGGSKLIKITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK++  DD   I +FGFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIPKEELSLALSRHATSKLASLDDLDAILSFGFRGEALASISSVSRLTLTSRTQEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++   V P A   G+ VE  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGSEMAVRVIPAAHPVGSTVEAADLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
              ++ FT               T   + +R++QV G+ F +NA+ ++   N ++L GY 
Sbjct: 181 VRSEIHFTLKHNGKQVRNYRPAKTEAQYLQRLAQVSGKAFADNALRVDCNHNGLSLSGYI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P       +  Y ++NGR V+D+ +   +R A+A+ +  G     VL+L +DP QVDV
Sbjct: 241 QSPFSEMAVGDTQYFYVNGRLVRDRLVNHAVRQAFAQQL-QGEQVAFVLMLNLDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-------GISTSSVLSKKMISSFHQDNA 350
           NVHPAK  +RF     + +FI+Q+++ A+ +         + T      +  S       
Sbjct: 300 NVHPAKHEVRFHESRYVHDFILQALESALRQSSELAFEAALDTQVTDQNRSASYIRPLQT 359

Query: 351 PKTHLPKYATSLTNTQEKLFL-----------QENRLSTNDLLPSDDPTYSEDNDPVEES 399
            ++       +  +T+E               + +R +    +     +           
Sbjct: 360 QQSDTGSNQIAHGDTEENALWLANERPAYGEREASRQAGGQRVQETQMSSYGSGQSGGRG 419

Query: 400 EATHYQLGIACAQIHQNYI---------------------ISQTTDGLVIVDQH------ 432
            +       + A +                          + Q  DG   +         
Sbjct: 420 RSYASTELPSQAAVDSYAQLMTTPGVSSQANQADDSHLPPMPQVLDGQYWLLVRGSELAL 479

Query: 433 ---AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE- 488
              +   R +  +  +      +  Q LL P  + + E     ++E +  + +LG++   
Sbjct: 480 LSLSCAAREVTRREIEAKLDAGLIGQPLLMPVSVKVDEDWQQTLVERELLVRKLGLELTI 539

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-DSSTTYTL 529
           R G   + I+++P  L +  +  ++ + +  I  +  TT  L
Sbjct: 540 RLGQ--LIIKKVPPYLRQSQLASVIPEFLQWIRFEEPTTEAL 579


>gi|262393031|ref|YP_003284885.1| DNA mismatch repair protein MutL [Vibrio sp. Ex25]
 gi|262336625|gb|ACY50420.1| DNA mismatch repair protein MutL [Vibrio sp. Ex25]
          Length = 670

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/397 (31%), Positives = 206/397 (51%), Gaps = 6/397 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVIKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SRP      
Sbjct: 61  KGIAKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRPAVQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMQVKLKPAAHPIGTTVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +           +RI+ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKIIRQYRAAKNQLQTEKRIAAVCGNAFVRHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYEMSLKPDQFAAYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+ +  +     +++   S+FH+    ++   +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSAVIDKPQVNE---SAFHRVEPTESEEVE 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           ++      QE             +  +       D +
Sbjct: 358 HSPEPEKVQEPASSPVPERVYQAIESTPAYPGRSDYE 394


>gi|197287175|ref|YP_002153047.1| DNA mismatch repair protein [Proteus mirabilis HI4320]
 gi|238690089|sp|B4F203|MUTL_PROMH RecName: Full=DNA mismatch repair protein mutL
 gi|194684662|emb|CAR46598.1| DNA mismatch repair protein [Proteus mirabilis HI4320]
          Length = 669

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/418 (32%), Positives = 211/418 (50%), Gaps = 10/418 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ ++  I  GG    +I DNG
Sbjct: 1   MAINLLPPQLANQIAAGEVVERPASVVKELLENSLDAGATTIDIDIDKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  CGISRDDLKLALARHATSKISTLDDLEAIMSMGFRGEALASISSVSRLTLTSRTASQEEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   G+ VEV DLF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYAEGRDMTVAVKPAAHPVGSTVEVLDLFYNTPARRKFLRTEKTEFGHIDEVVRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS   +       +            R+S + G  F++ A++L  +  ++ ++G+ 
Sbjct: 181 SRFDVSINLTHNGKRVRQYRAAKETHQHHRRLSAICGNHFVDQAMQLTWEHGDLAIKGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P      +   Y ++NGR ++D+ I   IR AY   +   + P  VL L +DP QVDV
Sbjct: 241 EHPLAPVQGSEIQYCYVNGRMMRDRLINHAIRQAYEGYLQGEQQPSYVLYLTVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS-------VLSKKMISSFHQDNA 350
           NVHPAK  +RF    ++ +FI Q++   + +    T S        L+        Q   
Sbjct: 301 NVHPAKHEVRFHESRLVHDFIYQAVLSVLRQVTEDTLSLDEEDNGALTATTFPENRQVAG 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                  Y   +T++ +K      + S    L     +  +  D  +  E+     G+
Sbjct: 361 ENVFSQPYQAPVTSSTQKKSTGAYQGSAGKGLTDTQKSPQKTLDTRQFGESYQRTQGM 418


>gi|238897715|ref|YP_002923394.1| methyl-directed mismatch repair protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465472|gb|ACQ67246.1| enzyme in methyl-directed mismatch repair [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 593

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/574 (27%), Positives = 275/574 (47%), Gaps = 20/574 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERPS  +KEL+ENSLDA ++++E  I  GG    +I DNG
Sbjct: 1   MPIKILSRELANQIAAGEVVERPSSVVKELVENSLDAGATKMEIDIHRGGIERIRIYDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +E+P+A+ RH T+KI   +D  +I + GFRGEAL SI +VS L L SR  +    
Sbjct: 61  VGISKDELPLALARHATNKIFSLEDLQSILSMGFRGEALASISSVSRLKLTSRTLEQKEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +++P +   GT +EV +LF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYTEGREMHVAIKPASHPVGTTIEVLNLFYNTPARRKFLRTEKTEWQHIDEVVRRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+   S       +     +      R+ ++ G  F+ +A+ L+ +S  ++++G+ 
Sbjct: 181 SRFDVAIDLSHNGKLLRQYGVAQSELQKERRLLRLCGASFLQHALTLSLESTGLSVKGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y +IN R V+D+ +   +R AY         P  VL L++DPRQVDV
Sbjct: 241 ADPH-SPKINDIQYFYINRRIVRDRVVNHAVRQAYETISTGSNTPSYVLYLDMDPRQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-TSSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI Q+I  A+N    S  +     + I+   + N       
Sbjct: 300 NVHPAKQEVRFHQTRLVHDFIYQAITTALNHSTSSFFAPPADIEKIAPIPKQNRSAAGSN 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--SEATHYQLGIACAQIH 414
            YA S     +   L +     +        T  E     +E   +      G   +   
Sbjct: 360 HYAESDRALNKNRILTKQACEASLSFYEAAQTEQEKTPFKKEIVRDENPNYFGRVLSIFS 419

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + +  + + ++    A    + +K      S +   Q +L P    L + E     
Sbjct: 420 SCYALIEYRNNIALLSLPEAER--LLKKAFLTPPSERSRIQPMLIPLKFKLEKTEIMAWE 477

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            H   L  +G++      N+  +R I   L   N+ +L+ +++  +    T   L + + 
Sbjct: 478 RHQNLLTLMGVEL-VIEKNSALLRGISLELRTHNLQKLIPELLAYLSKHET--LLPEHLA 534

Query: 535 NILATM--ACYGSIRSGRKMQSIEMNRLLREMEK 566
           + LA+   A +       +    +  +LL + E+
Sbjct: 535 DWLASQFDALH------HEWTVSQAIQLLTDFER 562


>gi|153002275|ref|YP_001367956.1| DNA mismatch repair protein [Shewanella baltica OS185]
 gi|166232107|sp|A6WSV4|MUTL_SHEB8 RecName: Full=DNA mismatch repair protein mutL
 gi|151366893|gb|ABS09893.1| DNA mismatch repair protein MutL [Shewanella baltica OS185]
          Length = 630

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/571 (26%), Positives = 258/571 (45%), Gaps = 55/571 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SRV+  I  GG    +I DNG
Sbjct: 2   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRVDIEIDKGGSKLIKIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 62  SGIPKDELALALSRHATSKLHTLDDLEAILSFGFRGEALASISSVSRLTLTSRTADQTEA 121

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 122 WQAHAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F   A+++  + +++ L GY 
Sbjct: 182 VRGDIHFTLTHNGKTVRNYRPAMNEAQYLQRLTQVSGRPFAEQALKIECQHDDLRLSGYL 241

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR ++D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 242 QSPW-SPVITDTHYFYVNGRLIRDRLVNHAVRQAFAQK-AELEQPGYVLMLDIDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I+Q++Q A+ + G                           
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELNVVHSSSLDEVEDVFVDSPTSAVGI 359

Query: 331 ----------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
                           +  S+ +  K   +  +  +  T    + +  T+          
Sbjct: 360 AAPFALGADTLESAQPLVASAAVQVKSAGAGREGASFGTQTNAFGSMATSRDSSRGSYSA 419

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI-----ACAQIHQNYIISQTTDGLVIV 429
             S            +     ++    +             A +   Y +  T D L ++
Sbjct: 420 SESRQRTELPSKAAIASYGALLQTPAYSVKNHDYQPSLPMPAILDSQYWVMATADKLSLL 479

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
              +       +++ +   +T +  Q LL P  +       A++ EHD  + +LG++   
Sbjct: 480 PIKSVALATRCQEI-EAKLATGLIGQPLLMPVSVAADADWQAVLDEHDTLIRQLGLELT- 537

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
                + I+++P  + +  + +++ + +  +
Sbjct: 538 IRYQQLIIKKVPPYIRESQLAKVIPEWLQSL 568


>gi|113968940|ref|YP_732733.1| DNA mismatch repair protein [Shewanella sp. MR-4]
 gi|123029966|sp|Q0HMP1|MUTL_SHESM RecName: Full=DNA mismatch repair protein mutL
 gi|113883624|gb|ABI37676.1| DNA mismatch repair protein MutL [Shewanella sp. MR-4]
          Length = 644

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/586 (26%), Positives = 261/586 (44%), Gaps = 70/586 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 61  SGIPKDELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++    P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F + A+ +  + +++ L GY 
Sbjct: 181 VRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR V+D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-STVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQK-AEVEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-------KKGISTSSVLSKKMISSFH---- 346
           NVHPAK  +RF     + ++I+Q++Q A+        +     SS   +  +S       
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELGFEHPFEPSSPQVRDEVSLSESGTQ 358

Query: 347 ----------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                     Q    KTH      S  +T      ++++L+      +    YS      
Sbjct: 359 TQTEHHAFELQSPESKTHSTWNEASRVDTSRVEISRDSQLTERTRDIASARPYSGVQSNA 418

Query: 397 ------------------------------------------EESEATHYQLGIACAQIH 414
                                                        +  +  +    A ++
Sbjct: 419 YGSMAVPRESRSGPTGESRARAELPSKAAIASYGELLQTPSYSVQDKPYQPVLAMPAMLN 478

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y +      L ++   +        ++ +   +T +  Q LL P  I       AL+ 
Sbjct: 479 GQYWVLAQGQNLSLLPIQSVALATRSHEI-ETKLATGLIGQPLLMPVSIAADTDWPALLE 537

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           EH+  + +LG++        + I+++P  L    + +++ + +  +
Sbjct: 538 EHETLIRQLGLELT-IRYQQLIIKKVPPYLRDSQLAKVIPEWLQSL 582


>gi|117919048|ref|YP_868240.1| DNA mismatch repair protein [Shewanella sp. ANA-3]
 gi|189030415|sp|A0KSR5|MUTL_SHESA RecName: Full=DNA mismatch repair protein mutL
 gi|117611380|gb|ABK46834.1| DNA mismatch repair protein MutL [Shewanella sp. ANA-3]
          Length = 648

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/590 (25%), Positives = 260/590 (44%), Gaps = 74/590 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 61  SGIPKDELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++    P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F + A+ +  + +++ L GY 
Sbjct: 181 VRGDIHFTLTHNGKIVRNCRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR V+D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-STVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQK-AEVEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH----------- 346
           NVHPAK  +RF     + ++I+Q++Q A+ + G        +                  
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELGFERPFEPSSPQIRDEASLSETGAQ 358

Query: 347 ----------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                     Q    KTH      S  +T      +E+R+ +     + D   +     V
Sbjct: 359 TQTEHHAFELQSPESKTHSTWNEASRVDTSRAETSRESRIDSPLGERTRDIASARPYAGV 418

Query: 397 EE----------------------------------------------SEATHYQLGIAC 410
           +                                                +  +  +    
Sbjct: 419 QSNAYGSMAVPRESRSGSAGESRARAELPSKVAIASYGELLQTPSYSVQDKPYQPVLAMP 478

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           A ++  Y +      L ++   +        ++ +   +T +  Q LL P  I       
Sbjct: 479 AILNGQYWVLAQGQNLSLLPIQSVALATRSHEV-ETKLATGLIGQPLLMPVSIAADTDWP 537

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           AL+ EH+  + +LG++        + I+++P  L    + +++ + +  +
Sbjct: 538 ALLEEHETLIRQLGLELT-IRYQQLIIKKVPPYLRDSQLAKVIPEWLQSL 586


>gi|54310432|ref|YP_131452.1| DNA mismatch repair protein [Photobacterium profundum SS9]
 gi|46914873|emb|CAG21650.1| putative DNA mismatch repair protein MutL [Photobacterium profundum
           SS9]
          Length = 717

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/443 (32%), Positives = 217/443 (48%), Gaps = 18/443 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIDRGGSRTIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  KGIAKDELGLALSRHATSKISSLDDLEAIVSLGFRGEALASISSVSRLTLTSRTATQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT +EV DLFF  PAR  FL++E+ E N I ++++R+A+
Sbjct: 121 WSAYAEGRDMDVQLKPAAHPIGTTIEVLDLFFNTPARRKFLRTEKTEFNHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T         +     T      R+    G+ F+ +A+ +  +  ++ L G+ 
Sbjct: 181 SRFDVSITLRHNGKTIRQYRASQTQIQKERRLVSACGQSFLQHALAVELEHGDLNLSGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++DK I   IR AY   +   +Y   VL +E+DP QVDV
Sbjct: 241 CTPQGSRSQNDVQYCYVNGRMMKDKLINHAIRQAYEANLASDQYSAYVLFIEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q IQ A+ +  +            S+H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGIQSALQQGAM--------DDQQSYHAPQRASAIAAP 352

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           YA + + + E     +   +   L    D     +    EE  ++      A    H   
Sbjct: 353 YADTASESMESAHSHQIAEAAPALQAIADTPNYPNKAQPEEWLSSSVASKSASNTQH--- 409

Query: 418 IISQTTDGLVIVDQHAAHERLIF 440
              Q  +   + D  A  ER  +
Sbjct: 410 ---QERNDKRVRDYRAV-ERSDY 428



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 124/386 (32%), Gaps = 38/386 (9%)

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFIL 265
            + I Q I       A++  +  +          P +    +       + +  +    L
Sbjct: 318 HDFIYQGIQSALQQGAMDDQQSYHAPQRASAIAAP-YADTASESMESAHSHQIAEAAPAL 376

Query: 266 STIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
             I  A     P    P   L   +  +      H  ++  R R+   +           
Sbjct: 377 QAI--ADTPNYPNKAQPEEWLSSSVASKSASNTQHQERNDKRVRDYRAV------ERSDY 428

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           ++ K IS S     K      + +      P+   +     E    ++   +   L+ + 
Sbjct: 429 MSDKRISGSLSPQGKSRDESGRSSQSNYDAPQRRNNAGYQPESAPSKQEVAAYQRLIQTP 488

Query: 386 DPTYSEDNDPVEESEATHYQLG----------------------IACAQIHQNYIISQTT 423
               S  +     ++A+    G                       A + + + Y++    
Sbjct: 489 PSIPSHASSLGSPAKASTTLTGESRSTAVTRQNVVDTQVGVGLGKALSIVAERYLLVSRH 548

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           DG+ ++    A       ++R       +  Q LL P  + +         +H   L +L
Sbjct: 549 DGIHVLSLDHAQRLHHKGQLRLAATE-GLKPQPLLIPHSVPVEPDLITCAEQHALLLKQL 607

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ--DRIENILATMA 541
           GI  +  G + + I  +   L ++N+ QL+ +++  ++  +     Q  D++ + LAT  
Sbjct: 608 GINLKAKGKSGLIILSVCLPLRQQNLQQLIPNLLTYLLSIAEDPDAQGWDKLWDWLATQ- 666

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKN 567
           C   +         +  +L+ E+E+ 
Sbjct: 667 C---VMPVDTFSLSQAIQLVTELEQL 689


>gi|258625638|ref|ZP_05720519.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582093|gb|EEW06961.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 384

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 206/375 (54%), Gaps = 3/375 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MTIRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGVDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVTQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNAPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VSFT         +    +T     +R++ V G  F+ + + +  +   + L G+ 
Sbjct: 181 SRFDVSFTLRHNGKMVRQYRAANTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRADQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  ++       + +   +  + +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSSALVQSAQVIAPSINDGAFHLPNVEEDAEASVAE 360

Query: 358 YATSLTNTQEKLFLQ 372
             T+  + +++++  
Sbjct: 361 PVTTEASVKKRVWQA 375


>gi|5542073|pdb|1B63|A Chain A, Mutl Complexed With Adpnp
 gi|33357456|pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
           Complex With Adpnp And One Rubidium
 gi|33357457|pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
           With Adpnp And One Potassium
          Length = 333

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/331 (38%), Positives = 189/331 (57%), Gaps = 4/331 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 3   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 63  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 122

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 123 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 183 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 242

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 243 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 302

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           VNVHPAK  +RF    ++ +FI Q +   + 
Sbjct: 303 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 333


>gi|33357458|pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
           Protein Complex With Adpnp And One Sodium
          Length = 333

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/331 (38%), Positives = 190/331 (57%), Gaps = 4/331 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 3   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEALPSI +VS LTL SR  +    
Sbjct: 63  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQEA 122

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +V+P A   GT +EV DLF+  PAR  FL++E+ E N I ++IRR+A+
Sbjct: 123 WQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIAL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 183 ARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWV 242

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 243 ADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 302

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           VNVHPAK  +RF    ++ +FI Q +   + 
Sbjct: 303 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 333


>gi|226356539|ref|YP_002786279.1| DNA mismatch repair protein [Deinococcus deserti VCD115]
 gi|226318529|gb|ACO46525.1| putative DNA mismatch repair protein MutL [Deinococcus deserti
           VCD115]
          Length = 550

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/598 (25%), Positives = 257/598 (42%), Gaps = 72/598 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI  L   +   IAAGE++ RP   ++EL++N+LDA ++RV+  + GGG S  ++ DNG
Sbjct: 1   MKIHVLPPHVARLIAAGEVVSRPLDVVRELLDNALDAGATRVDIEVEGGGLSLVRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS---DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+ ++ + +A  RH TSK++   D  + + T GFRGEAL +      L L++RP Q   
Sbjct: 61  SGIPADMVALAPARHATSKLAPETDAVNRVTTLGFRGEALWAAAQAGILELVTRPAQQVG 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            AQ++  G+++S  R      GT V VR LF  +PARL    +   E   IT +I R  +
Sbjct: 121 AAQVSAHGDQLSVSRTS-APAGTTVTVRHLFAHLPARLRTQATPAAEVREITTLIGRYVL 179

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +P + +  +     R          +    ++ V G    N  V L        L+G  
Sbjct: 180 HHPGLHWRLTVDGEARLT----HAPSDHRGAVASVYGPLSANRVVSLEAP----GLRGVV 231

Query: 238 GIPTFNRGNANQFYVFINGRT-VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   R   ++ +  INGR  V    +   +    AE IP G  P+ VL L ++P   +
Sbjct: 232 SRPELTRARRDRMHFSINGRPVVAAPELEKAVIEGLAELIPAGVAPLCVLDLTVEPENQN 291

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            NVHPAK  +   +   +   +  ++ +A+  + ++        + S    + AP+    
Sbjct: 292 PNVHPAKQIVALADLGAVAAQVRDAVAQAMAGQVLAR---GMPALRSPTESEAAPRQSS- 347

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                                                          +            
Sbjct: 348 -----------------------------------------------FPRLTQLGLYQDL 360

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y+++Q    L IVD HAAHER ++E++    +        L  PE++ L  G+ A + E 
Sbjct: 361 YLLAQGEGDLWIVDAHAAHERALYEQL--TRDLRAAPPHELPEPELLHLTPGQLARLHER 418

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
             +L   G+  E FG     +R +PA L+   +P+L   I++  +         D   ++
Sbjct: 419 GPELRSWGLTIEDFGAGLARLRTVPATLAALPVPRLHEQIVEAALGDG-----PDPQRDV 473

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LA +AC  ++++G  +      ++L  +        C HGRPT ++L   D+   FGR
Sbjct: 474 LARLACAPALKAGM-LTLQLGEQVLAALSTCEQPWSCPHGRPTTLRLAERDLAHAFGR 530


>gi|146294369|ref|YP_001184793.1| DNA mismatch repair protein [Shewanella putrefaciens CN-32]
 gi|145566059|gb|ABP76994.1| DNA mismatch repair protein MutL [Shewanella putrefaciens CN-32]
          Length = 641

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/599 (24%), Positives = 265/599 (44%), Gaps = 68/599 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 5   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG 64

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 65  SGIPKEELTLALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 124

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   + P A   G+ +E  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 125 WQAYAEGVDMAVKIMPAAHPVGSTIEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F  +A+++  + +++ L GY 
Sbjct: 185 VRGDIHFTLTHNGKLVRNYRPAVNESQYLQRLTQVSGRQFAEHALKIECQHDDLRLSGYL 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR ++D+ +   +R A+A        P  VL+LEIDP QVDV
Sbjct: 245 QSPW-STVLTDTHYFYVNGRLIRDRLVNHAVRQAFAHK-AEIEQPGYVLMLEIDPHQVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------ISTSSVLSKKMIS 343
           NVHPAK  +RF     + ++I+Q++Q A+ + G               +       K I 
Sbjct: 303 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELCLTDNGNLTEPETACMDTQCAKAIE 362

Query: 344 SFH-------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                      D   K    + A+ +T +QE+        +   +        +      
Sbjct: 363 PSGLFELASISDQTDKIERIRDASPVTASQERFTESSQAQAVTSVRSGFGIQKNAFGSMA 422

Query: 397 EESEATHYQLG---------------------------------------IACAQIHQNY 417
           +  ++ +                                                +   Y
Sbjct: 423 QPRDSHYRSFSGGEARQRAELPSKSAIVSYGALLQTPSYNVKDKDYQPVAPMPPILDGQY 482

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            +    + L ++   +       +++ +   +T +  Q LL P  +       +L+ E++
Sbjct: 483 WVVVEANHLRLLPIKSVALATRAQEI-EAKLATGLIGQPLLMPVSVVADPDWQSLLDENE 541

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-DSSTTYTLQDRIEN 535
           + + ++G++        + I+++P  L +  + +L+ + +  +  ++ +   L   +  
Sbjct: 542 QLIRQIGLELT-IRYQQLIIKKVPPYLRESQLAKLIPEWLQSLRFETPSPNALAKWLAK 599


>gi|120597490|ref|YP_962064.1| DNA mismatch repair protein [Shewanella sp. W3-18-1]
 gi|120557583|gb|ABM23510.1| DNA mismatch repair protein MutL [Shewanella sp. W3-18-1]
          Length = 641

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/599 (24%), Positives = 265/599 (44%), Gaps = 68/599 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 5   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG 64

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 65  SGIPKEELTLALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 124

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   + P A   G+ +E  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 125 WQAYAEGVDMAVKIMPAAHPVGSTIEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F  +A+++  + +++ L GY 
Sbjct: 185 VRGDIHFTLTHNGKLVRNYRPAVNEAQYLQRLTQVSGRQFAEHALKIECQHDDLRLSGYL 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR ++D+ +   +R A+A        P  VL+LEIDP QVDV
Sbjct: 245 QSPW-STVLTDTHYFYVNGRLIRDRLVNHAVRQAFAHK-AEIEQPGYVLMLEIDPHQVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI--------------STSSVLSKKMIS 343
           NVHPAK  +RF     + ++I+Q++Q A+ + G               +       K I 
Sbjct: 303 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELCLTDNGNLTEPEAACMDTQCTKAIE 362

Query: 344 SFH-------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                      D   K    + A+ +T +QE+        +   +        +      
Sbjct: 363 PSGLFELASISDQTDKIERIRDASPVTASQERFTESSQAQAVTSVRSGFGIQKNAFGSMA 422

Query: 397 EESEATHYQLG---------------------------------------IACAQIHQNY 417
           +  ++ +                                                +   Y
Sbjct: 423 QPRDSHYRSFSGGEARQRAELPSKSAIVSYGALLQTPSYNVKDKDYQPVAPMPPILDGQY 482

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            +    + L ++   +       +++ +   +T +  Q LL P  +       +L+ E++
Sbjct: 483 WVVVEANHLRLLPIKSVALATRAQEI-EAKLATGLIGQPLLMPVSVVADPDWQSLLDENE 541

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-DSSTTYTLQDRIEN 535
           + + ++G++        + I+++P  L +  + +L+ + +  +  ++ +   L   +  
Sbjct: 542 QLIRQIGLELT-IRYQQLIIKKVPPYLRESQLAKLIPEWLQSLRFETPSPNALAKWLAK 599


>gi|257468133|ref|ZP_05632229.1| DNA mismatch repair protein mutL [Fusobacterium ulcerans ATCC
           49185]
          Length = 648

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/661 (25%), Positives = 309/661 (46%), Gaps = 86/661 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E + N IAAGE++E P+  +KEL+ENSLDAES  ++  +  GG+    I+D+G G
Sbjct: 4   IKVLDESVSNIIAAGEVVENPASMLKELLENSLDAESKSIKIEVKSGGRHVI-ISDDGKG 62

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT +++ ++V+RH TSKI+  +D  N+ T+GFRGEAL SI AVS ++L SR   + TG+ 
Sbjct: 63  MTQDDLLLSVERHATSKIAKKEDLYNLFTYGFRGEALSSISAVSKMSLSSRTKDDETGSA 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +SG KI+S++ +  N GT +E++DLFF  PARL FL+    E   I D+I + A+  P
Sbjct: 123 ITVSGGKITSLKEIQRNVGTTIEIKDLFFNTPARLKFLRKTTTEYMNIKDIIVQEALGNP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
             + T          ++ ++T       I ++ G + + N        ++    GY G  
Sbjct: 183 NTAITLILDDK----VSIKTTGNGIDNTIVEIFGRNVLKN--------SKAFSMGYLGNA 230

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  R   +  + F+NGR V+ K + + I   Y   +  G+YP  +L LEIDP++VDVNVH
Sbjct: 231 SLYRATRDSIFTFVNGRMVKSKLLENAIIDGYYTKLMKGKYPFAILFLEIDPKEVDVNVH 290

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-----DNAPKTHL 355
           P+K  ++F N + I   +++ I+   +   +  S  + K +           + +    +
Sbjct: 291 PSKKIVKFSNESNIYGKVLKEIENCFDGDDVFVSPTMEKNIEKESEALIDFTEFSKFVPM 350

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
               T+    + + + +E R   + +   ++   +E+   +++S+   ++   +  + + 
Sbjct: 351 KAENTTFEGIEVERYPKERRTEISPIEAEEETEKTEEAVKIQKSDEDDFENMFSEKKKNS 410

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            + I +        ++    +  +  ++R +     I S+  ++ E     + +  ++ +
Sbjct: 411 TFEIKEEIKVFEGNEKSDTIKSDVVSEIRAEVKEDIIKSEAAVSEERATAPKTDFKVLGQ 470

Query: 476 HDEDL---HRLG-IKA-----------------ERFGPNA------IAIREIPAILSKKN 508
             +      R G  +                  E +G N       + +R     L  + 
Sbjct: 471 IFDSFILVERDGVFEIYDQHIVHERILYEKLKKEYYGTNVSRQQLLVPLR---ITLDLRE 527

Query: 509 IPQLLRDI---------IDEIIDSSTT----------YTLQDRIENIL------------ 537
              +  +I         IDE  ++              + ++   NI+            
Sbjct: 528 RELIFENIEYFTAFGFEIDEFDENEVVIRSVPVMNFRDSTENIFRNIIKNLKENKETDIR 587

Query: 538 ----ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
                +M+C G+I++  K+   EM  ++R + +      C HGRP  +K+ L+D+EKLF 
Sbjct: 588 ESIIISMSCKGAIKANEKLTLHEMETIIRRLHEIGE-YTCPHGRPIIVKITLNDLEKLFK 646

Query: 594 R 594
           R
Sbjct: 647 R 647


>gi|90414477|ref|ZP_01222453.1| DNA mismatch repair protein [Photobacterium profundum 3TCK]
 gi|90324482|gb|EAS41041.1| DNA mismatch repair protein [Photobacterium profundum 3TCK]
          Length = 717

 Score =  368 bits (946), Expect = e-99,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 212/428 (49%), Gaps = 11/428 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIDKGGSRTIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  KGIAKDELGLALSRHATSKISSLDDLEAIVSLGFRGEALASISSVSRLTLTSRTATQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT +EV DLFF  PAR  FL++E+ E N I ++++R+A+
Sbjct: 121 WSAYAEGRDMDVQLKPAAHPIGTTIEVLDLFFNTPARRKFLRTEKTEFNHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T         +     T      R+    G+ F+ +A+ +  +  ++ L G+ 
Sbjct: 181 SRFDVSITLRHNGKTIRQYRASQTQIQKERRLVSACGQSFLQHALAVELEHGDLKLSGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y ++NGR ++DK I   IR AY   +   +Y   VL +E+DP QVDV
Sbjct: 241 CTPQGSRSQNDVQYCYVNGRMMKDKLINHAIRQAYEANLASDQYSAYVLFIEVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q IQ A+ +  +            S+H           
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGIQSALQQGAM--------DEQQSYHAPQRASAIATP 352

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           YA + + + E     +   +   L    D     +    EE  ++      A    HQ  
Sbjct: 353 YADTASESVESAHSHQIAEAAPALQAIADSPNYPNKAQPEEWLSSSVASESASNTQHQER 412

Query: 418 IISQTTDG 425
              +  + 
Sbjct: 413 NDKRERND 420



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 111/309 (35%), Gaps = 23/309 (7%)

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P    P   L   +         H  ++  R RN   +      + ++AI+     ++  
Sbjct: 386 PNKAQPEEWLSSSVASESASNTQHQERNDKRERNDRAVERSDYTNGKRAIDSLSPQSNGN 445

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY------- 389
                 S    D A + +   Y   +  +++++   +  + T   +PS   +        
Sbjct: 446 SGSGRSSQSSYDTAQRRNNAGYQPEIGPSKQEVAAYQRLIQTPPSIPSHASSVGASAKAS 505

Query: 390 -----SEDNDPVEESEATHYQLGIACAQ----IHQNYIISQTTDGLVIVDQHAAHERLIF 440
                      V        Q+G+   +    + + Y++    DG+ ++    A      
Sbjct: 506 TTLTGESRTTAVTRQNVVDTQVGVGLGKALSIVAERYLLVSRHDGIHVLSLDHAQRLHHK 565

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
            ++R       +  Q LL P  + +     A   +H   L +LGI  +  G + + I  +
Sbjct: 566 GQLRLAATE-GLKPQPLLIPHSVPVESDLIACAEQHALLLKQLGINLKAKGKSGLIILSV 624

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQ--DRIENILATMACYGSIRSGRKMQSIEMN 558
              L ++N+ QL+ +++  ++  +     Q  D++ + LAT  C   +         +  
Sbjct: 625 CLPLRQQNLQQLIPNLLTYLLSIAEDPDAQGWDKLWDWLATQ-C---VMPVDTFSLSQAI 680

Query: 559 RLLREMEKN 567
           +L+ E+E+ 
Sbjct: 681 QLVTELEQL 689


>gi|317062418|ref|ZP_07926903.1| DNA mismatch repair protein mutL [Fusobacterium ulcerans ATCC
           49185]
 gi|313688094|gb|EFS24929.1| DNA mismatch repair protein mutL [Fusobacterium ulcerans ATCC
           49185]
          Length = 650

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 167/661 (25%), Positives = 309/661 (46%), Gaps = 86/661 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E + N IAAGE++E P+  +KEL+ENSLDAES  ++  +  GG+    I+D+G G
Sbjct: 6   IKVLDESVSNIIAAGEVVENPASMLKELLENSLDAESKSIKIEVKSGGRHVI-ISDDGKG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT +++ ++V+RH TSKI+  +D  N+ T+GFRGEAL SI AVS ++L SR   + TG+ 
Sbjct: 65  MTQDDLLLSVERHATSKIAKKEDLYNLFTYGFRGEALSSISAVSKMSLSSRTKDDETGSA 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +SG KI+S++ +  N GT +E++DLFF  PARL FL+    E   I D+I + A+  P
Sbjct: 125 ITVSGGKITSLKEIQRNVGTTIEIKDLFFNTPARLKFLRKTTTEYMNIKDIIVQEALGNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
             + T          ++ ++T       I ++ G + + N        ++    GY G  
Sbjct: 185 NTAITLILDDK----VSIKTTGNGIDNTIVEIFGRNVLKN--------SKAFSMGYLGNA 232

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           +  R   +  + F+NGR V+ K + + I   Y   +  G+YP  +L LEIDP++VDVNVH
Sbjct: 233 SLYRATRDSIFTFVNGRMVKSKLLENAIIDGYYTKLMKGKYPFAILFLEIDPKEVDVNVH 292

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-----DNAPKTHL 355
           P+K  ++F N + I   +++ I+   +   +  S  + K +           + +    +
Sbjct: 293 PSKKIVKFSNESNIYGKVLKEIENCFDGDDVFVSPTMEKNIEKESEALIDFTEFSKFVPM 352

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
               T+    + + + +E R   + +   ++   +E+   +++S+   ++   +  + + 
Sbjct: 353 KAENTTFEGIEVERYPKERRTEISPIEAEEETEKTEEAVKIQKSDEDDFENMFSEKKKNS 412

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            + I +        ++    +  +  ++R +     I S+  ++ E     + +  ++ +
Sbjct: 413 TFEIKEEIKVFEGNEKSDTIKSDVVSEIRAEVKEDIIKSEAAVSEERATAPKTDFKVLGQ 472

Query: 476 HDEDL---HRLG-IKA-----------------ERFGPNA------IAIREIPAILSKKN 508
             +      R G  +                  E +G N       + +R     L  + 
Sbjct: 473 IFDSFILVERDGVFEIYDQHIVHERILYEKLKKEYYGTNVSRQQLLVPLR---ITLDLRE 529

Query: 509 IPQLLRDI---------IDEIIDSSTT----------YTLQDRIENIL------------ 537
              +  +I         IDE  ++              + ++   NI+            
Sbjct: 530 RELIFENIEYFTAFGFEIDEFDENEVVIRSVPVMNFRDSTENIFRNIIKNLKENKETDIR 589

Query: 538 ----ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
                +M+C G+I++  K+   EM  ++R + +      C HGRP  +K+ L+D+EKLF 
Sbjct: 590 ESIIISMSCKGAIKANEKLTLHEMETIIRRLHEIGE-YTCPHGRPIIVKITLNDLEKLFK 648

Query: 594 R 594
           R
Sbjct: 649 R 649


>gi|282896875|ref|ZP_06304881.1| DNA mismatch repair protein [Raphidiopsis brookii D9]
 gi|281198284|gb|EFA73174.1| DNA mismatch repair protein [Raphidiopsis brookii D9]
          Length = 550

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 150/598 (25%), Positives = 273/598 (45%), Gaps = 65/598 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  +++  I AGE+I+  S  ++EL+ENSLDA ++R+   +    +   ++TDNG G
Sbjct: 2   IQSLPTEVVYLITAGEVIDSLSAVVRELVENSLDAGATRIVISLY-PEQWRVRVTDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E++  A   H TSKI    D   I T GFRG+AL S+  +  L + SR   +N G +
Sbjct: 61  MNLEDLQQAAIAHSTSKIHHAADLWKIKTLGFRGQALHSLTTLGELEIFSRCAGDNQGWR 120

Query: 121 IAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  +     +   VA    GT+V V +LF     R   L  +  +   +   I+++A+ +
Sbjct: 121 VVYNKNGTVTKTEVAAIAPGTVVTVDNLFGNYAERRQGLPHKNQQLKKVQATIQQIALCH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P+V++     K+  + +   S      P+ ++Q+   D     + + E  + I L    G
Sbjct: 181 PQVTYQVWQDKTEWFTIYPASAVERIIPQILNQIKPGDLKELKLTIPELDSTINL--VVG 238

Query: 239 IP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           +P   +R   +   + INGR V+   +   +  A+ +T+P  RYPV  + L I P Q++ 
Sbjct: 239 LPDRCHRHKPDWVKIAINGRIVKSPELEEAVFGAFYKTLPRDRYPVCFVHLTIQPDQINW 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           N +PAK+ I     T  +  + + I +A                                
Sbjct: 299 NRNPAKNEIYLNKMTYWQQKVTEGIDQAF------------------------------- 327

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              S+ ++  K  ++  ++S    L      Y+  +    E++ ++        Q    Y
Sbjct: 328 ---SIASSTIKESVRTGKISNLFKLAETKGDYNFSHSDPGENKGSNLIDLKVIGQASNTY 384

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II++ ++G+ +++QH AHER+I+E++   +    + S  +L             L  E  
Sbjct: 385 IIAEYSEGMWLIEQHIAHERVIYERLCDQWQIVPVESPIVL-----------YQLSTEQV 433

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILS-KKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
           + L R+ +  E FG N  A+R +P +L  +++ P+ L ++           +L   +E  
Sbjct: 434 KQLERINLDIECFGENLWAVRSVPEMLKNREDSPEALLEL-----------SLGGNLEAA 482

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +AC  +IR+G  M  +EM +L+ +  +  N   C HGRP  + L+ S + + F R
Sbjct: 483 KVAVACRTAIRNGTPMTLVEMEKLIYDWHRTRNPRTCPHGRPICLTLEESALARFFRR 540


>gi|163802743|ref|ZP_02196633.1| DNA mismatch repair protein [Vibrio sp. AND4]
 gi|159173450|gb|EDP58272.1| DNA mismatch repair protein [Vibrio sp. AND4]
          Length = 676

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 164/676 (24%), Positives = 281/676 (41%), Gaps = 107/676 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MSIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +VS LT+ SRP      
Sbjct: 61  KGIVKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTMTSRPAVQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYSEGRDMKVKLQPTAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFAHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +           +RI+ V G  F+ N + +  +   + L G+ 
Sbjct: 181 SRFDVTINVRHNGKMVRQYRAAKNQLQTEKRIAAVCGNVFVRNMLRIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE-------- 289
             P   R  ++  Y ++NGR ++DK I   IR +YA ++   ++   V+ +E        
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYAASLKSDQFAAYVVFIELDPHQVDV 300

Query: 290 -IDPRQVDVNVH-------------------------PAKSYIRFRN------------- 310
            + P + +V  H                         P  +   F +             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALADALAQSLVIDKPQVNESAFHHAEPVELIEPSEVV 360

Query: 311 ------------------PTIIRNFI--------IQSIQKAINKKGISTSSVLSKKMISS 344
                             P  +   I            +     +  S SSV   + + S
Sbjct: 361 VAPSEEPTNIPEKMGAQVPERVYQAIDSTPAYPGRSDYKVKPRDRATSDSSVREARAVDS 420

Query: 345 FHQDNA---PKTHLPKYATSLTNTQEKLFLQENR-----LSTNDLLPSDDPTYSEDNDPV 396
           F + +         P  +  L +       QE R     L T D  P   P     + P+
Sbjct: 421 FKRTDWVDSKPVSKPTSSKELRHADPAPSKQEVRAYHELLKTPDFEPQTVPQKVPVSTPL 480

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           E        L  A A + + Y++  +  G+ +V    A       ++    +   + +Q 
Sbjct: 481 EMVLPPVTALSKALAVVGEQYVLMSSDGGVALVALPRAEFYRTKGQL--TPSDGALKAQP 538

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P  + L      L  +H +D  +LGI+ +     A+ +  +PA L ++N+  L+ D+
Sbjct: 539 LLVPLSVKLEPELVQLAQDHQQDFAQLGIQLKARNDKALMVMGVPAPLRQQNLQNLIPDL 598

Query: 517 IDEI-----IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           +         + +T   L + I+ +   +    +++S   +   E  +++ E+E+     
Sbjct: 599 LSYAQARLRKEGATAQPLSELIDWLAFKV---TTVKSHYTLS--EAIQIIAELEQLR--- 650

Query: 572 QCNHGRPTFIKLKLSD 587
              HG     +L L D
Sbjct: 651 ---HG-----QLPLED 658


>gi|85058313|ref|YP_454015.1| DNA mismatch repair protein [Sodalis glossinidius str. 'morsitans']
 gi|84778833|dbj|BAE73610.1| DNA mismatch repair protein [Sodalis glossinidius str. 'morsitans']
          Length = 701

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 137/410 (33%), Positives = 207/410 (50%), Gaps = 7/410 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+E  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIEIDIERGGAKRIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL S+ AVS LTL SR       
Sbjct: 61  SGIDKDELALALARHATSKIASLDDLETITSMGFRGEALASVSAVSRLTLTSRTAAQGEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  + +P A   GT VEV DLF+  PAR  F+++E+ E   I +VIRR+A+
Sbjct: 121 WQAYAEGRDLAVTQKPAAHPVGTTVEVLDLFYNTPARRKFMRTEKTEFTHIDEVIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+F          +    S  G    R+  + G  F+  A+ ++ +  ++ + G+ 
Sbjct: 181 ARFDVTFILQHNGKTVRQYRAISQPGQHLRRLGALCGPAFVERALSVSWQHGDLAIHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                        Y ++N RT++DK I   IR AY E +   + P  VL L+++P QVDV
Sbjct: 241 AD-QSGGELPEMQYSYVNRRTMRDKLINHAIRQAYQEQLAGTQQPAFVLFLDVEPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +   ST+  L+         +N   +    
Sbjct: 300 NVHPAKHEVRFHQARLVHDFIYQAVMIVLQQ---STTPGLAMGEEGPCAPENRLASGRNH 356

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           +A    + Q                 S D   S  +   +E E +    G
Sbjct: 357 FALPAASGQRPSVAAGAESGRQRGEISGDTGSSRQHSGGQERERSSGYAG 406



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 14/240 (5%)

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           S      +S+    +A  + +       +  + +L L                + +    
Sbjct: 450 SAADDAPLSADDAGHAGTSQVSGAHHGQSEKEVQLTLIPPEADPTGAASVKRDSGAAHVS 509

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             E      +  G     +   Y + ++   L ++    A ER + E+ +    S  +++
Sbjct: 510 VGESVVGNPHTFGRVLTLVPPCYALVESAGSLALLSLQVA-ERCLTER-QLTPGSETLSA 567

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P  + L   E A +  H   L  +GI  +     AI +  +P  L ++N+  L+ 
Sbjct: 568 QPLLIPLRMTLRNAEVAALKRHQPLLQEMGIALQAHLHQAI-LNAVPLPLRQQNLQNLIP 626

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           D++  +     T     ++   LA    + S+            +LL E+E+      C 
Sbjct: 627 DLLGYL--EGETSVTHHQVAVWLARRLQHESV----AWSHSRAIQLLAEVERL-----CP 675


>gi|319427724|gb|ADV55798.1| DNA mismatch repair protein MutL [Shewanella putrefaciens 200]
          Length = 641

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 147/599 (24%), Positives = 265/599 (44%), Gaps = 68/599 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 5   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG 64

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 65  SGIPKEELTLALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 124

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   + P A   G+ +E  DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 125 WQAYAEGVDMAVKIMPAAHPVGSTIEAVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F  +A+++  + +++ L GY 
Sbjct: 185 VRGDIHFTLTHNGKLVRNYRPAVNEAQYLQRLTQVSGRQFAEHALKIECQHDDLRLSGYL 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR ++D+ +   +R A+A        P  VL+LEIDP QVDV
Sbjct: 245 QSPW-STVLTDTHYFYVNGRLIRDRLVNHAVRQAFAHK-AEIEQPGYVLMLEIDPHQVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------ISTSSVLSKKMIS 343
           NVHPAK  +RF     + ++I+Q++Q A+ + G               +       K I 
Sbjct: 303 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELCLTDNGNLTEPETACMDTQCAKAIE 362

Query: 344 -------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                  +   D   K    + A+ +  +QE+        +   +        +      
Sbjct: 363 PSGLFELASTSDQTGKIERIRDASPVMASQERFTESSQTQAVTSVRSGFGIQKNAFGSMA 422

Query: 397 EESEATHYQLG---------------------------------------IACAQIHQNY 417
           +  ++ +                                                +   Y
Sbjct: 423 QPRDSHYRSFSGGEARQRAELPSKSAIVSYGALLQTPSYNVKDKDYQPVAPMPPILDGQY 482

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            +    + L ++   +       +++ +   +T +  Q LL P  +       +L+ E++
Sbjct: 483 WVVVEANHLRLLPIKSVALATRAQEI-EAKLATGLIGQPLLMPVSVVADPDWQSLLDENE 541

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII-DSSTTYTLQDRIEN 535
           + + ++G++        + I+++P  L +  + +L+ + +  +  ++ +   L   +  
Sbjct: 542 QLIRQIGLELT-IRYQQLIIKKVPPYLRESQLAKLIPEWLQSLRFETPSPNALAKWLAK 599


>gi|218708321|ref|YP_002415942.1| DNA mismatch repair protein [Vibrio splendidus LGP32]
 gi|218321340|emb|CAV17290.1| DNA mismatch repair protein mutL [Vibrio splendidus LGP32]
          Length = 723

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 126/397 (31%), Positives = 206/397 (51%), Gaps = 6/397 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKMIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP   +  
Sbjct: 61  KGIVKDELALALSRHATSKIHTLDDLEAIVSLGFRGEALASISSVARLTMTSRPTTQDQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WAAHSEGRDMQVKLQPAAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ + +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIRQYRAAKTQVQAEKRIAAVCGNPFVRHMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +     ++ +++   S+FHQ  AP      
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDGLAQSKQIDAAPVNQ---SAFHQSEAPSYQQDD 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
               +         +    S+ D     +        
Sbjct: 358 SVPEVDGVASFAEPENTLPSSADQSQVSERVRHAIEQ 394


>gi|254489689|ref|ZP_05102885.1| DNA mismatch repair protein MutL [Methylophaga thiooxidans DMS010]
 gi|224465098|gb|EEF81351.1| DNA mismatch repair protein MutL [Methylophaga thiooxydans DMS010]
          Length = 552

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 153/524 (29%), Positives = 262/524 (50%), Gaps = 35/524 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L   + NQIAAGE++ERP+  +KELIENS+DA +++++  I G G    +++DNG 
Sbjct: 5   RIHALPLHLANQIAAGEVVERPASVLKELIENSIDAGATQIDITIEGAGNQLIKVSDNGN 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKI   +  S+I + GFRGEALPSI +VS LTL S+ P  + G 
Sbjct: 65  GIHPDDLALALSRHATSKIHSSEQLSHIDSLGFRGEALPSIASVSRLTLASKQPDQDCGW 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q++     + +V P A   GT V V +LFF +PAR  FL+S++ E N +T  + R+A++ 
Sbjct: 125 QVSSD---VETVEPTAHPDGTTVSVAELFFNLPARRRFLRSDKTELNHLTTTLNRLALSR 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F+         K+   +    F +RI+++ G+ F+  A  L ++   I L G+ G 
Sbjct: 182 FDVGFSAQLADQTTLKLPAITDPKLFYQRIARICGQAFVRQARYLEQQFEAIHLHGWVGN 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +R   +  Y FINGR ++D+ I   IR AY + +P GR    VL L +   +VDVNV
Sbjct: 242 FAAHRAQTDVQYFFINGRVIKDRIINHAIRQAYGDALPAGRQAAYVLYLTLPLDRVDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR+  ++   I +++Q+A+ +      S                     +  
Sbjct: 302 HPTKHEVRFRDARLVHGLITRAVQEALTQDEHGVVS---------------------QSE 340

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  +    ++E+  +      S   T +     V   E+           +HQ Y++
Sbjct: 341 LPLSKPENTSAVKESSQNYQPHPVSQTLTTATPPSSVSAPESDFV-------LLHQRYLL 393

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
             + + +V +D   A      ++     ++  + S+ +L P  I L     AL+  H   
Sbjct: 394 LTSPEPIV-LDLQEAALLFKRKQFLDAVDNKTLASRPILVPLNIPLASDALALVNHHHAL 452

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           L  L ++      +AI ++ IP +LS  ++  ++  ++  +   
Sbjct: 453 LKELALEFTV-NTDAITVKRIPFLLSHIDLQTIVAAVMTALQSQ 495


>gi|227499534|ref|ZP_03929641.1| DNA mismatch repair protein MutL [Anaerococcus tetradius ATCC
           35098]
 gi|227218413|gb|EEI83664.1| DNA mismatch repair protein MutL [Anaerococcus tetradius ATCC
           35098]
          Length = 614

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 180/622 (28%), Positives = 283/622 (45%), Gaps = 38/622 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I KL ++ I +IAAGE+IE P   IKEL+ENS+D+ +  +   I  GGK++ ++TDNG
Sbjct: 1   MTIIKLDDQTIEKIAAGEVIESPVSIIKELVENSIDSGADTITVEIKNGGKTYIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   EI +A  +H TSKI D  D  +I++ GFRGEAL SI  VS LT +S+    + G
Sbjct: 61  CGIARGEIELAFSKHATSKIKDFNDLYDIYSLGFRGEALASIVTVSQLTAISKTDFEDIG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++I     K SS+  +A N GT + V+DLF  IP R  FLKS+ +E N I+ ++   AI 
Sbjct: 121 SKINFDNGK-SSLTSIATNTGTSIVVKDLFRDIPVRRRFLKSDTLEANRISRLMYAFAIG 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           Y  +SF F    +  +  N    N +   RIS+++ +    N + L  K++   + GY  
Sbjct: 180 YKDISFKFIKNDNIEFSTN---KNEDLKVRISKLLDDSLGENLISLKAKNDIYKINGYIS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              + RGN +  Y++IN R V    I   I   Y   IP  R+PV  + +  +P+ +DVN
Sbjct: 237 NSNYYRGNRSVQYIYINNRLVDSDLIRDRIELNYRGLIPNARFPVYFIYISTNPKNLDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-----------HQ 347
           VHP K  I+F     +   I  ++   + +   +    +  +                  
Sbjct: 297 VHPNKRSIKFSYEDELIELIDGTLSIKLGENNKAKEIDVRTETSEDLMDFSDYGQILNKY 356

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRL------------STNDLLPSDDPTYSEDNDP 395
           +        +  ++L  T+EK   +   L              + +      + S  N P
Sbjct: 357 NKVSSFAKEENKSNLYKTKEKKDYKSKSLDDFFNNNIELDVQNDSIEDKRKISISNKNQP 416

Query: 396 VEESEAT----HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            EE E       ++       I   Y + +  D L I+D   A E++ F+K  +  ++  
Sbjct: 417 KEEFEEQTYLEDFEFLSYKCSIFNRYSLFEKKDELYILDHRRASEKINFDKFIKQLSNKS 476

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           I  Q LL P II L   +        E ++ LG  AE     +I IR  P I       +
Sbjct: 477 IDKQILLDPIIIKLNRNDFEKFNSKKEFINNLGFDAEIISDESIIIRSTPFIFEIPENDK 536

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              D+ID   D    Y      +  L+ +      R G K+   E   L++++    N  
Sbjct: 537 FFYDLIDIDYDRDVDYLYNKLRKLNLSYI-----FRKGDKIGEKEAFALIKDISAMANPY 591

Query: 572 QCNHGRPTFIKLKLSDIEKLFG 593
           + + G+ T IK+   D+EK F 
Sbjct: 592 KTSDGKATLIKINEKDVEKYFE 613


>gi|126172805|ref|YP_001048954.1| DNA mismatch repair protein [Shewanella baltica OS155]
 gi|166232106|sp|A3D022|MUTL_SHEB5 RecName: Full=DNA mismatch repair protein mutL
 gi|125996010|gb|ABN60085.1| DNA mismatch repair protein MutL [Shewanella baltica OS155]
          Length = 638

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 150/579 (25%), Positives = 257/579 (44%), Gaps = 63/579 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SRV+  I  GG    +I DNG
Sbjct: 2   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRVDIEIDKGGSKLIKIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 62  SGIPKDELALALSRHATSKLHTLDDLEAILSFGFRGEALASISSVSRLTLTSRTADQTEA 121

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 122 WQAHAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F   A+++  + +++ L GY 
Sbjct: 182 VRGDIHFTLTHNGKMVRNYRPAMNEAQYLQRLTQVCGRPFAEQALKIECQHDDLRLSGYL 241

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   ++  Y ++NGR ++D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 242 QSPW-SPVISDTHYFYVNGRLIRDRLVNHAVRQAFAQK-AELEQPGYVLMLDIDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I+Q++Q A+ + G                           
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELNFVHSSSLDEVEDVFVDAPTSATEI 359

Query: 331 ------------------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
                                      +S +  K   +  +  +  T    + +  T   
Sbjct: 360 SAPFVLGADSAQVNVPADTLESAQPLVASAVQVKSAGAGREGTSFGTQTNAFGSMATPRD 419

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE-----ATHYQLGIACAQIHQNYIISQ 421
                     S            +     ++          +       A +   Y +  
Sbjct: 420 NSRGSYSAGESRQRTELPSKAAIASYGALLQTPSYSVKDQDYQPSLPMPAILDGQYWVMA 479

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           T D L ++   +       +++ +   +T +  Q LL P  +       A++ EHD  + 
Sbjct: 480 TADKLSLLPIKSVALATRCQEI-EAKLATGLIGQPLLMPVSVAADADWQAVLDEHDTLIR 538

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           +LG++        + I+++P  + +  + +++ + +  +
Sbjct: 539 QLGLELT-IRYQQLIIKKVPPYIRESQLAKVIPEWLQSL 576


>gi|84393188|ref|ZP_00991952.1| DNA mismatch repair protein [Vibrio splendidus 12B01]
 gi|84376240|gb|EAP93124.1| DNA mismatch repair protein [Vibrio splendidus 12B01]
          Length = 752

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 122/408 (29%), Positives = 206/408 (50%), Gaps = 3/408 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKMIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP   +  
Sbjct: 61  KGIVKDELALALSRHATSKIHTLDDLEAIVSLGFRGEALASISSVARLTMTSRPATQDQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WAAHSEGRDMQVKLQPAAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ + +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIRQYRAAKTQVQAEKRIAAVCGNPFVRHMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +     +  + +         +  +     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDGLAQSKQIDAVPIKQSAFHQSEVIHHQQDSSNS 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
               + +  E      +R     +  S+     +      ++E+    
Sbjct: 361 GIGEVASFSEPESSMPSRSDQTQVSDSERHAIEQTPAYPRKAESERTY 408



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 82/224 (36%), Gaps = 34/224 (15%)

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTY--SEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           + QE +   E R +  ++    +     ++ N    +  A    LG A + + + Y++  
Sbjct: 516 SPQEHVAPVETRDNIENIENKGNIEAKPAQQNPVHSKPRAPVTDLGKAVSVVERQYLVMG 575

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             +G V+V    A    +  ++  D     + SQ LL P  I L      +     + L 
Sbjct: 576 NKNGSVLVSLAKAELLRVIGQL--DTREGALKSQPLLVPLSIKLGSELVEVAKALSQTLA 633

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            LGI+ +     A+ +  +P+ L ++N+  L+ D++      +        ++N  AT+ 
Sbjct: 634 LLGIELKARNSEAVMVMGVPSPLRQQNLQILIPDLLSYAASLNA-----QIVDNHAATV- 687

Query: 542 CYGSIRSGRKM------------------QSIEMNRLLREMEKN 567
                     +                     E  +L+ E+E+ 
Sbjct: 688 ------FNDMLPSLVNWIGIQTAQVKSDYTLSEAVQLVGELEQL 725


>gi|37520848|ref|NP_924225.1| DNA mismatch repair protein [Gloeobacter violaceus PCC 7421]
 gi|35211843|dbj|BAC89220.1| DNA mismatch repair protein [Gloeobacter violaceus PCC 7421]
          Length = 573

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 147/597 (24%), Positives = 265/597 (44%), Gaps = 81/597 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L+++ +  +AAGE+I+ P+  ++EL++NSLDA + R+            Q+ DNG G
Sbjct: 46  IRPLADQTVRLLAAGEVIDSPAAVVRELVDNSLDAGADRIRVSFW-PESWRVQVQDNGLG 104

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
             +EE+PMA + H TSK+   +D   + T GFRGE L SI  V+ L +++  P   T  +
Sbjct: 105 FEAEELPMAARSHATSKLGAIEDLWRLRTLGFRGEGLHSIAVVARLEILTCTPTARTATR 164

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                + ++   +P A  PGT+V V +LF   P R  FL   + +   +T ++ R A+AY
Sbjct: 165 ARYDHKGELVESQPAAAAPGTVVTVSELFELQPVRRRFLADTKAQVRAVTQLVHRYALAY 224

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P   F  +     + ++          +R  Q++     ++  E++ + +   ++   G+
Sbjct: 225 PGHLFELAVDGRLQLQLWAAPG---LKQRALQLLNSYDEHDLREVHLERDGRRVRLAIGL 281

Query: 240 P-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           P   +R  A+   ++INGR V+   +   +R  +  T+  GR PV ++ L +   +VD N
Sbjct: 282 PDRCSRARADWLQIYINGRFVRHGELEQAVRAGFERTLRPGRQPVCIVQLILPADEVDWN 341

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            HPAK  ++          ++ +I + +                             PK 
Sbjct: 342 RHPAKLEVQLAGTAPACELVVAAIGEGLRHFA-------------------------PKP 376

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           A +L    E         +  +LL                          A AQ+HQ YI
Sbjct: 377 AAALLRLAEAHLPYAAESTGGELL------------------------LKALAQLHQTYI 412

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++   G+ +V+QH AHER++FE +  D+    +                   L     +
Sbjct: 413 LAEYPGGVCLVEQHVAHERVLFEALESDWQVVPLE------------PPLALELSSRQAQ 460

Query: 479 DLHRLGIKAERFGPNAIAIREIP-AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           +L   GI+ E FG  +  +R  P A++ + +  + L ++ D           Q+    + 
Sbjct: 461 NLTEHGIEVEAFGERSWLVRSAPVALVGRVDCAEGLMELAD-----------QEDAAQMR 509

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           A ++C  +IR+G  +  ++M +LL   ++  N   C HGRP ++ L   ++ + F R
Sbjct: 510 AALSCRTAIRNGTALSPLQMQQLLDRWQRTRNPHTCPHGRPIYMPLTDGELARFFRR 566


>gi|86148236|ref|ZP_01066533.1| DNA mismatch repair protein [Vibrio sp. MED222]
 gi|85834006|gb|EAQ52167.1| DNA mismatch repair protein [Vibrio sp. MED222]
          Length = 728

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/408 (29%), Positives = 207/408 (50%), Gaps = 3/408 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKMIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP   +  
Sbjct: 61  KGIVKDELALALSRHATSKIHTLDDLEAIVSLGFRGEALASISSVARLTMTSRPTTQDQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WAAHSEGRDMQVKLQPAAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ + +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIRQYRAAKTQVQAEKRIAAVCGNPFVRHMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++   + +     ++ + +         +  +     
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDGLAQSKQIDAAPIKQSAFHQSEVMHHQQGSSNP 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
               + +  E   +  +      +  S+     +      ++E+    
Sbjct: 361 GIGEIASFSEPESIMPSSSEQPQVSDSERYAIEQTPAYPRKAESEQVY 408



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 85/246 (34%), Gaps = 19/246 (7%)

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                    +   ++      L K         +    QE+          D        
Sbjct: 463 EPHQHHGEPAPSKREVKAYKELLKTPDFDDQVVQPSSPQEHVAPVETRDNIDKEAKPSQQ 522

Query: 394 DPVE-ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
           +PV  +  A    LG A + + + Y++    +G V+V    A    +  ++  D     +
Sbjct: 523 NPVNLKPRAPVTDLGKAVSIVERQYLVMGNKNGSVLVSLAKAELLRVVGQL--DTRGGAL 580

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            SQ LL P  I L      +     + L  LGI+ +     A+ +  +P+ L ++N+  L
Sbjct: 581 KSQPLLVPLSIKLGSELVEVAKALSQTLALLGIELKARNSEAVMVMGVPSPLRQQNLQIL 640

Query: 513 LRDIIDEIIDSS-----------TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           + D++      +           ++  L   +  I    A    ++S   +   E  +L+
Sbjct: 641 IPDLLSYAASLNAQIVDNHSANVSSDLLPSLVNWIGIQTAQ---VKSDYTLS--EAVQLV 695

Query: 562 REMEKN 567
            E+E+ 
Sbjct: 696 GELEQL 701


>gi|51598472|ref|YP_072660.1| DNA mismatch repair protein [Borrelia garinii PBi]
 gi|81825651|sp|Q662F3|MUTL_BORGA RecName: Full=DNA mismatch repair protein mutL
 gi|51573043|gb|AAU07068.1| DNA mismatch repair protein [Borrelia garinii PBi]
          Length = 611

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 148/623 (23%), Positives = 270/623 (43%), Gaps = 45/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + ++ +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG 
Sbjct: 3   KIRFLDKYLVQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLEEGGIHKILIIDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +    H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  
Sbjct: 63  GIGKEDLKICYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTGNES-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +      GTIV V  +F   PAR  FLK E +ET +   V+    I +
Sbjct: 122 QIEVENGIEKCFKKQPAINGTIVNVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTG 238
           P+++F  +  +     +       +  +R+  V G    NN  ++  ++   I ++ +  
Sbjct: 182 PEINFEINLNQK----LRKIYFKESLIDRVQNVYGNVIENNKFKVLKKEHENIKIELFLA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              F++ +      F+N R +  K +L  I   ++  I  G +P+  L LEI+P  +D N
Sbjct: 238 PANFSKKSKRHIKTFVNRRPIDQKDLLEAITNGHSRIISPGNFPICYLFLEINPEYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS--------------- 343
           VHP K  +RF N   +   I  +I    +K   S + ++ K+ ++               
Sbjct: 298 VHPQKKEVRFFNLPFLFKLISDNINNFFDKDINSYNEIVIKRQLTDDDNLIEMINQPKNL 357

Query: 344 ------------SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                       +   ++           +    +    + +NR S  + + +       
Sbjct: 358 NKTNTYDIIQNKNLETEHTVNDLSKNIIQNDIGLRRYNSIIQNRPSFKENITNIFSDKFL 417

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
           + +                 QI   ++I +  + +  +DQHA HE++I+EK+R   NS K
Sbjct: 418 EFEEPPNKNEKEEIKFNYIGQIFSEFLIVEKVNEIYFIDQHAVHEKIIYEKLR---NSKK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E   + +    +I    E+  ++ I   + GP    +  IP I ++     
Sbjct: 475 TVQKLLIPIEFTIVDKNIEEIIDSEIEEYKKMDIIISKIGPKKYQLESIPNICNQYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              + +     S  + T+     ++ A +AC  ++++   +       L+ E  K     
Sbjct: 532 ---NTLINFFQSRKSRTINSLESDLYANIACRKAVKTNDILSLEFSKFLIDEFFKLE-IK 587

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGR  + K+   ++EK   R
Sbjct: 588 HCPHGRKIYYKISKFELEKKVAR 610


>gi|113474371|ref|YP_720432.1| DNA mismatch repair protein [Trichodesmium erythraeum IMS101]
 gi|110165419|gb|ABG49959.1| DNA mismatch repair protein MutL [Trichodesmium erythraeum IMS101]
          Length = 587

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 169/623 (27%), Positives = 280/623 (44%), Gaps = 79/623 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L +++++ IAAGE+I+  +  ++EL+ENSLDA ++R+   I    +   QI+DNG 
Sbjct: 4   QIQTLPKEVVSLIAAGEVIDSLAAVVRELVENSLDAGATRIIVSIIS-EQWRVQISDNGM 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-----Q 114
           GM    +  A   H TSKI++  D + I + GFRGEAL S+  +S+L ++SRP       
Sbjct: 63  GMNLANLKRAANPHSTSKITNLQDLTKISSLGFRGEALHSLANLSNLEILSRPKSPLSEN 122

Query: 115 NNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
            N G ++    + K      VA+ PGTIV+V  +F   P R   + S   +   I  +I+
Sbjct: 123 ENEGWRVVYDQQGKSVKAERVAIAPGTIVKVSHIFGKWPVRRKGMPSPPQQMRGIQLIIQ 182

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKS---- 228
           ++A+ YP V++          +++  +T     P+ +S V   D      E++E+     
Sbjct: 183 QIALCYPDVTWQIWQGSKLWIQISPGATAKQILPQILSTVRLNDLQYIQQEIDEQEAEEL 242

Query: 229 ----------------NEITLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
                           +  +L+   G+P   +R   +   V INGR V+   +  TI  +
Sbjct: 243 NIQTSSFSQSQDSQLLDRQSLELVLGLPDRCHRRRPDWVKVGINGRVVKVPELEQTIIRS 302

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
            A T P  RYP+  + L+I P Q++ N HPAK+ I   N    +  I   I KA+     
Sbjct: 303 LARTCPGDRYPLCFIHLQIFPYQINWNRHPAKTEIYLDNLKFWQQQINLVIGKALQ---- 358

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                        F  D  P+  L +    L    E     +   +              
Sbjct: 359 -------------FSSDIMPEFPLSERVEKLLKVSENTGNYQVSRA----------IEVS 395

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
            ++  ++          A AQ+H  YI+++   G+ +++QH AHER+++E++   +    
Sbjct: 396 PDNTEQKKSKLGLIELKAIAQLHNTYIVAEHPSGIWLIEQHIAHERILYEELCDAWEIIF 455

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + +  +L             L     E L RL I  E FG    A R  P +L+K+N   
Sbjct: 456 LETPIILHH-----------LSPAQIEQLQRLNIDIETFGDLLWAARSAPKMLAKRN--- 501

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              D  D +I+ S    L+      +AT AC  +IR+G  +   EM  LL + +   N  
Sbjct: 502 ---DCADALIELSKGGDLES---AKVAT-ACRSAIRNGTPLSLPEMQSLLNKWQLTHNPR 554

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRP ++ L+ S + + F R
Sbjct: 555 TCPHGRPIYLPLEESALSRFFRR 577


>gi|114564474|ref|YP_751988.1| DNA mismatch repair protein MutL [Shewanella frigidimarina NCIMB
           400]
 gi|122298757|sp|Q07XW5|MUTL_SHEFN RecName: Full=DNA mismatch repair protein mutL
 gi|114335767|gb|ABI73149.1| DNA mismatch repair protein MutL [Shewanella frigidimarina NCIMB
           400]
          Length = 619

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 149/570 (26%), Positives = 257/570 (45%), Gaps = 58/570 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MAIQLLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIDKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL S+  + +  
Sbjct: 61  AGIAKDELALALSRHATSKVHTLDDLEAILSFGFRGEALASISSVSRLTLTSKTAEQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+AI
Sbjct: 121 WQAYAEGSQMDVKVTPAAHPQGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAI 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +       +    +T+    +R++Q+ G  F + A+ +  + ++  L GY 
Sbjct: 181 VRSDIHFTLTHNAKLVRQYRPANTDIQTQQRLAQICGRAFADQALSIACEHDDFVLTGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P       +  + ++NGR ++D+ +   ++ A+AE   +   P  VL+L +DP QVDV
Sbjct: 241 QSPQDTVIT-DTNFFYVNGRLIRDRLVNHAVKQAFAEY-GIEHQPGYVLMLSLDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK------------------ 339
           NVHPAK  +RF     + +FI+Q+++ A+ +      S   +                  
Sbjct: 299 NVHPAKHEVRFHQSRYVHDFILQAVRSALVEMPALPLSDELEHHDNVAPMHTESNLMHDV 358

Query: 340 -----------------------KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
                                      S H           Y+ ++  + +K     +  
Sbjct: 359 KVVDTAEDEFTLNHGSSKAINSVSQFGSMHVPGKNNGLSGGYSAAIKPSYDKKPSSASSA 418

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH---- 432
            T   + +         +                  +   + +    D L ++       
Sbjct: 419 QTKTAIANYGQLLHTPMNSAVSYVHEAAPQVTMPPLLAGEHWVICKDDKLSLLPIKSVLL 478

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFG 491
           A  ++ +  K+     +  + SQ LL P  I         +   D+ L ++GI+   RF 
Sbjct: 479 AVRKKDVETKL-----ANGLVSQPLLMPVSIAADLDWIETLAVRDQLLRQMGIELTIRF- 532

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEII 521
              + I+++P  L +  +  ++ +++  I 
Sbjct: 533 -QQLIIKKVPPYLRECQLAIVIPELLQWIQ 561


>gi|307611574|emb|CBX01254.1| DNA mismatch repair protein MutL [Legionella pneumophila 130b]
          Length = 576

 Score =  367 bits (941), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 148/569 (26%), Positives = 275/569 (48%), Gaps = 24/569 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS  I NQIAAGE+IERP+  +KEL+ENSLDA +S +   +  GG     ++DNG 
Sbjct: 4   RIHQLSPAIANQIAAGEVIERPASVVKELLENSLDAGASVIGVDVNYGGLLQITVSDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV  H TSKI   DD  +I + GFRGEAL SI +V+ +T++S+P + +   
Sbjct: 64  GIFGDDLPLAVAAHATSKIRTLDDLYSIDSMGFRGEALASIASVAKVTIISKPEEQDNAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +  ++ P A N GT ++V DLF+  P R  FLK+E++E   I  V++R A++ 
Sbjct: 124 MLRVEG-ENRTLSPCARNIGTTIDVSDLFYNAPVRKRFLKNEKLEFQAIEMVVKRFALSA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++ T    K   + +    +      R+ +++G  F+  A+ L+ + + + L G+   
Sbjct: 183 PRIALTLKHNKKLIFSLPPALSEQAKAIRMGRILGNTFMREAIFLDVEHSGMRLYGWISN 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   ++ ++++N R V+DK +   ++ AY   +  GR+P+ +L   +   +VDVNV
Sbjct: 243 HRLQRSQNDRQWIYVNQRMVKDKLLQHAVKQAYDGLLHAGRFPICLLYFTLPASEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+ P ++ +F    + KA+ +  +  S        +S   +       P + 
Sbjct: 303 HPTKHEVRFQQPRLVHDFFTSQLTKAL-QSTLDHSDTREYAYAASSSNEQQNTVSEPSHI 361

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +   + E       R  +     +   +        + S   H +       +++ +I+
Sbjct: 362 CNDRESHEAA-----RALSPSWSANSLSSSVTSKGYKKTSSVYHPETEFQWVILNERFIL 416

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                   + D  A  +  I +++ Q      + S+ LL      L         +   +
Sbjct: 417 VFIKQRPYLADLVALFQEWIEKQLMQKAL--PLESRPLLISIRYPLPNQWIHKPEQLKRE 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L R+GI+ E    + + IR IP      ++ +   +I+ E+    T        E ++A 
Sbjct: 475 LARVGIQIEYSNADDLLIRSIPLNAPYLDVRRFF-NILCELDFFDT--------EQLIAL 525

Query: 540 MACYGSIRSGRKMQSI---EMNRLLREME 565
           ++    I   +++      EMN++L E+ 
Sbjct: 526 IS-RSQIFDPKQLTVEERIEMNQVLLELS 553


>gi|149192037|ref|ZP_01870264.1| DNA mismatch repair protein [Vibrio shilonii AK1]
 gi|148834138|gb|EDL51148.1| DNA mismatch repair protein [Vibrio shilonii AK1]
          Length = 666

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 140/533 (26%), Positives = 244/533 (45%), Gaps = 29/533 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LTL SRP      
Sbjct: 61  KGIAKDELQLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVARLTLTSRPATQEQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT +EV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WSAYAEGRDMAVKLKPAAHPIGTTLEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS           +     T+    +RI+ V G  F+ N +++  + N++ L G+ 
Sbjct: 181 SRFDVSINLKHNGKLVRQYRAAKTDAQTEKRIAAVCGAPFVRNMLKIELQHNDLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   +L ++IDP QVDV
Sbjct: 241 TTPEGARAQSDLQYCYVNGRMMKDKLINHAIRQSYENSLAPEQFAAYILFIDIDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++  A+ +     +  +S    S+             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDALVQAKSIDAQPVSPAAFSTSANSQNEAKVTAH 360

Query: 358 YATSLTNTQ----------EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                T+            E +     R          +      +   E +E  H    
Sbjct: 361 REPEQTSRIDVDDATLSAVESIPAYPGRADYQRRDSQSEYAVQSTSVGHEIAE--HSPSS 418

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
              ++       ++++  ++     A  E  +++++              +   +  L E
Sbjct: 419 DWVSERGAKTSSNKSSARIIEKAPTA-DEVRVYQELM---------QTPDIETNVHQLSE 468

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI----LSKKNIPQLLRDI 516
            E     + D ++ R+G          + ++  P      L +    +L   +
Sbjct: 469 PEMQKPNQIDVNIERIGKAIAIVEQCYVLVKAEPICAVVSLRRAEFYKLFAQL 521


>gi|217974862|ref|YP_002359613.1| DNA mismatch repair protein [Shewanella baltica OS223]
 gi|217499997|gb|ACK48190.1| DNA mismatch repair protein MutL [Shewanella baltica OS223]
          Length = 637

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 156/579 (26%), Positives = 265/579 (45%), Gaps = 63/579 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SRV+  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRVDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIPKDELALALSRHATSKLHTLDDLEAILSFGFRGEALASISSVSRLTLTSRTADQTEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAHAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F   A+++  + +++ L GY 
Sbjct: 181 VRGDIHFTLTHNGKTVRNYRPAINEAQYLQRLTQVCGRPFAEQALKIECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   ++  Y ++NGR ++D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-SPVISDTHYFYVNGRLIRDRLVNHAVRQAFAQK-AELEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I+Q++Q A+ + G                           
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELNFVHSSSLGEVEDVFVDAPTSATEI 358

Query: 331 ------------------------ISTSSVLSKKMISSFHQDNAPKTHLPKY---ATSLT 363
                                      +S +  K   +  +  +  T    +   AT   
Sbjct: 359 SAPFVLGADSAQVNVPADTLESAQPLAASAVQVKSAGAGREGASFGTQTNAFGSMATPRD 418

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNYIISQ 421
           N++      E+R  T     +   +Y         S  +  +       A +   Y +  
Sbjct: 419 NSRGNYSAGESRQRTELPSKAAIASYGALLQTPSYSVKDQDYQPSLPMPAILDSQYWVMA 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           T D L ++   +       +++ +   +T +  Q LL P  +       A++ EHD  + 
Sbjct: 479 TADKLSLLPIKSVALATRCQEI-EAKLATGLIGQPLLMPVSVAADADWQAVLDEHDTLIR 537

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           +LG++        + I+++P  + +  + +++ + +  +
Sbjct: 538 QLGLELT-IRYQQLIIKKVPPYIRESQLAKVIPEWLQSL 575


>gi|291565823|dbj|BAI88095.1| DNA mismatch repair protein MutL [Arthrospira platensis NIES-39]
          Length = 571

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 154/610 (25%), Positives = 264/610 (43%), Gaps = 72/610 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  LSE +++ IAAGE+I+  +  ++EL+EN++DA+++R+   +    +   Q+ DNG 
Sbjct: 7   SIETLSEDVVDLIAAGEVIDSVAAVVRELVENAIDAKATRISVSLW-PQQWRIQVADNGE 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-- 117
           GM    +  A   H TSKI+   D   I + GFRGEAL SI  +S L ++SR   +++  
Sbjct: 66  GMDLVNLKRAAMAHSTSKIATARDLLKISSLGFRGEALHSIAQLSDLEILSRGGLSSSPS 125

Query: 118 --GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                +     +   V  VA+ PGT+V+V +LF    +R     +   +      +++++
Sbjct: 126 SGWRVVYNHQGEAEMVETVAIAPGTVVKVSNLFANWSSRRTAGPTATQQLRAAQLMLQQI 185

Query: 176 AIAYPKVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           A+ +P+V++          +     +T    PE I  V   D     ++++         
Sbjct: 186 ALCHPQVTWQIHQNDRPWLRFGPAVTTQQMLPEFIRGVRVGDLQYLKMDVDPPQQVEECH 245

Query: 235 GYTGIPTF----------NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
            +                +R   +   + +NGR V+   +  TI +A+A T    RYPV 
Sbjct: 246 KFLSKSWLEVVIGLPDRASRRRKDWVKIGVNGRMVRSPELEPTILSAFARTCGRDRYPVC 305

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            + L IDP  +D N HP+K+ I        +  I  +I + +                  
Sbjct: 306 FVHLHIDPALIDWNRHPSKAEIYLHYLNHWQEQIHLAIDQTLKLN--------------- 350

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
                      P+  ++  N  EKL       ++         T     +  E  +    
Sbjct: 351 -----------PESLSAGVNPIEKLLRVSEDTASY-------RTRPTPLESAENPQRVDV 392

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
               A  QIH  YI+++  +GL +V+QH AHER+I+E++ + +    +++  ++      
Sbjct: 393 PKLKAIGQIHNTYIVAEHPEGLWLVEQHIAHERVIYEQLCRRWQVIPLSTPIIVAN---- 448

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
                  L     E L RL ++ + FG    AIR  P IL       L +D  + +I+ S
Sbjct: 449 -------LSEAQLEQLTRLNLEVDPFGDGLWAIRSAPEIL------ALRQDCQEALIELS 495

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               LQ      +AT AC  +IR+G  +   EM  LL +     +   C HGRP F+ L+
Sbjct: 496 LGGDLQAAQ---VAT-ACRSAIRNGTSLSLTEMQTLLDQWVSTRSPRTCPHGRPIFLSLE 551

Query: 585 LSDIEKLFGR 594
            S + + F R
Sbjct: 552 ESSLARFFRR 561


>gi|308048236|ref|YP_003911802.1| DNA mismatch repair protein MutL [Ferrimonas balearica DSM 9799]
 gi|307630426|gb|ADN74728.1| DNA mismatch repair protein MutL [Ferrimonas balearica DSM 9799]
          Length = 609

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 152/556 (27%), Positives = 258/556 (46%), Gaps = 43/556 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R+E  I  GG     I DNG
Sbjct: 1   MAIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIEVEIDRGGSKRILIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK++   D  +I +FGFRGEAL SI +VS LTL SR    +  
Sbjct: 61  QGINKEELSLALARHATSKVASLADLESILSFGFRGEALASISSVSRLTLSSRTADGSEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++   +P A   GT VEV DLFF  PAR  FLK+++ E   I + +RR+A+
Sbjct: 121 WQAYAEGREMAVRVQPTAHPVGTTVEVVDLFFNTPARRRFLKADKTEFTHIEEQLRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   + F          +    S      +R++ + G  F   A  L   ++++ L+GY 
Sbjct: 181 AREGIHFILRHNGKVVRQYRPASNERQREQRLAAICGSAFTERAFGLTSATDDLALRGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +       ++  Y ++NGR V+D+ +   +R A  E    G+   V L L +DP +VDV
Sbjct: 241 ALDDERARVSDIQYFYVNGRVVRDRLVSHAVRQAMEEAGLPGQAGFV-LYLSLDPHEVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHPAK  +RF     + +FI+Q++Q+ +    +  ++    + ++  + + +   P   
Sbjct: 300 NVHPAKHEVRFHQARYVHDFILQALQQGLAQRQQPALTPQHQVQERPATPYREGEGPYPL 359

Query: 355 LP--------------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
            P                                    +  +       +     S    
Sbjct: 360 TPTEGLDSARHDSDSRPSSSGAGGGYSGGGYAGAGRGGQAAYQPPPLRPSQSPTRSAVDN 419

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV----DQHAAHERLIFEKMR 444
           Y+        +EA         + + + + + Q    L +V       A  +R + E++ 
Sbjct: 420 YAHLMQTPAPAEAPATDRWRWLSALDEQHGLVQKQQQLRLVRLPDLGRALMKRDLSERL- 478

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
               +  +  Q LL P  + +      ++   DE L RLG +    G   + IR +PA+L
Sbjct: 479 ----AQGLVGQPLLLPVSVPVDVNWVTILEAQDELLRRLGTQLVVQGER-LVIRTVPAVL 533

Query: 505 SKKNIPQLLRDIIDEI 520
            + ++ + + +++  +
Sbjct: 534 RRADLAKAIPELLQWL 549


>gi|91794555|ref|YP_564206.1| DNA mismatch repair protein MutL [Shewanella denitrificans OS217]
 gi|123165778|sp|Q12J93|MUTL_SHEDO RecName: Full=DNA mismatch repair protein mutL
 gi|91716557|gb|ABE56483.1| DNA mismatch repair protein MutL [Shewanella denitrificans OS217]
          Length = 665

 Score =  366 bits (939), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 208/400 (52%), Gaps = 10/400 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIHILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIDKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +V+ LTL S+  +    
Sbjct: 61  SGIPKDELALALSRHATSKVHSLDDLEAILSFGFRGEALASISSVARLTLTSKTAEQTEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++     P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+AI
Sbjct: 121 WQAHAEGSQMDVSLMPAAHPQGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAI 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + F+ +       +    +T+    +R+SQ+ G  F   A+ L  + + ++L+GY 
Sbjct: 181 VRTDIHFSLTHNGKLVRQYRAANTDIQMQQRLSQICGRAFAEQAITLACEHDGLSLEGYI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  N    +  Y ++NGR V+DK +   +R A+AE     + P  VL L +DP QVDV
Sbjct: 241 QSPHDN-SVTDTNYFYVNGRLVRDKLVNHAVRQAFAEH-QWHQQPSYVLKLTLDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF     + +FI+Q++Q A+ +     S          F QDN        
Sbjct: 299 NVHPAKHEVRFHQSRYVHDFILQALQSALAQFPAKGSQAEYD-----FEQDNGSLEATAA 353

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
                  +  +   +E   S +    ++  +    +   E
Sbjct: 354 SNPDNGLSPSRGHAEEGDFSNSVAYAANAASVHRGSTSSE 393


>gi|315303085|ref|ZP_07873784.1| DNA mismatch repair protein MutL [Listeria ivanovii FSL F6-596]
 gi|313628546|gb|EFR96980.1| DNA mismatch repair protein MutL [Listeria ivanovii FSL F6-596]
          Length = 454

 Score =  365 bits (938), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 153/452 (33%), Positives = 242/452 (53%), Gaps = 14/452 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL++ +     + G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLSMETST-GESKGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS    +  + N    NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKSILQSN---GNGDLRQVIAAIYGVSIARKSIPVEAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--------MISSFHQDNAPK 352
           PAK  +R      +   I Q I++A ++  +     +SKK         I    ++N PK
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKQAFHELQLIPDGEVSKKQKELQKSEQIQMSFEENKPK 360

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
              P   +     +      +  + T+ +L S      E+     E+            Q
Sbjct: 361 EESPTLFSKPNIPEYIPSDDDAPIETDFILESAPVYSPEEEIEHPETPKERIPKMYPIGQ 420

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
           +H  YI +Q  +GL I+DQHAA ER+ +E  R
Sbjct: 421 MHATYIFAQNENGLYIIDQHAAQERIKYEFYR 452


>gi|148379758|ref|YP_001254299.1| DNA mismatch repair protein MutL [Clostridium botulinum A str. ATCC
           3502]
 gi|148289242|emb|CAL83338.1| DNA mismatch repair protein [Clostridium botulinum A str. ATCC
           3502]
          Length = 589

 Score =  365 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 159/607 (26%), Positives = 272/607 (44%), Gaps = 36/607 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +++
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           HP KS ++F++   +   I  ++ +AI  +   S ++  +K+ I+ +  + +    +   
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNKEDINIYDSEKSITEPIKLE 359

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
              +    +     +  +  N++    + T    N  ++E            ++ ++ Y 
Sbjct: 360 KEEVQIPIDLNSNNKIDIFGNNINKLPNNTELLKNIGIKEKNTLENNNDFYTSKQNEIYY 419

Query: 419 ISQTTDGL--VIVDQHAAHERLIFEKMRQ----DFNSTKITSQTLLTPEIIDLLEGECAL 472
            ++  + L     D ++  E+ + +  +       N     S  +   E          +
Sbjct: 420 ANKNDECLNSCNKDNYSKIEKSLQKDNKNPDILYLNEHNRNSSPINIKENKS---NNFYV 476

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI-----IDEIIDSSTTY 527
            M+     +   I  E+       I +  A   K    +   +I     I +I+ S    
Sbjct: 477 DMKIIGQFNNTYILIEK-DKELYIIDQH-AAHEKVLFEKFKCEIEKGYVISQILLSPVVI 534

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L +                     ++ ++ +L+ +M    N   C HGRPT IK  L D
Sbjct: 535 ELSEDE--------------FNIYEENKDIFKLIEDMLILNNPYTCPHGRPTMIKFTLKD 580

Query: 588 IEKLFGR 594
           +EK F R
Sbjct: 581 LEKKFKR 587


>gi|289672581|ref|ZP_06493471.1| DNA mismatch repair protein [Pseudomonas syringae pv. syringae FF5]
          Length = 399

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 214/378 (56%), Gaps = 9/378 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGS 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +   V+P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S   V   +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLYRALGDVRPENQLGGSVPVVAEARPSGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLF 370
             +      L   Q + F
Sbjct: 382 GEMRLANNVLEQPQGEPF 399


>gi|148981051|ref|ZP_01816271.1| DNA mismatch repair protein [Vibrionales bacterium SWAT-3]
 gi|145961027|gb|EDK26350.1| DNA mismatch repair protein [Vibrionales bacterium SWAT-3]
          Length = 725

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 127/415 (30%), Positives = 214/415 (51%), Gaps = 12/415 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ ++R++  I  GG    ++ DNG
Sbjct: 1   MTIKILPARLANQIAAGEVVERPASVVKELVENSLDSGATRIDIDIEKGGAKMIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD   I + GFRGEAL SI +V+ LT+ SRP   +  
Sbjct: 61  KGIVKDELALALSRHATSKIHTLDDLEAIVSLGFRGEALASISSVARLTMTSRPATQDQA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT VEV DLFF  PAR  FL++E+ E   I ++++R+A+
Sbjct: 121 WAAHSEGRDMQVKLQPAAHPIGTSVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+           +     T     +RI+ V G  F+ + +++  +   + L G+ 
Sbjct: 181 SRFDVTINLRHNGKMIRQYRAAKTEVQAEKRIAAVCGNPFVRHMLKIELEHQGLKLHGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R  ++  Y ++NGR ++DK I   IR +Y  ++   ++   VL +E+DP QVDV
Sbjct: 241 TTPEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRPDQFATYVLFIELDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL-- 355
           NVHPAK  +RF    ++ +FI Q++   + +     ++ +++   S+FHQ  AP      
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALSDGLAQSKQIDAAPINQ---SAFHQSEAPNYQQDG 357

Query: 356 ----PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
                +  T+ +  +  + +   +   ++ +              E  +A     
Sbjct: 358 SIPEAEEMTNFSAPESNVPVHSEQSQVSERVRHAIEQTPAYPRKAESEQAYDQPQ 412



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 93/248 (37%), Gaps = 16/248 (6%)

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++    S    KK   S      P     + +      +   F  +    ++        
Sbjct: 459 RQEWIESRPAPKKEKESHQHHAEPAPSKREVSAYKELLKTPGFEHQTVEPSDAKQQVAQT 518

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             SE   P  +       LG A + + + Y++    +G V+V    A    +  ++  D 
Sbjct: 519 VSSEAELPQSKPRTPVTDLGKAVSIVERQYLMMGNKNGCVLVSLAKAELLRVIGQL--DT 576

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            S  + SQ LL P  + +      +    ++ L  LGI+ +     AI +  +P+ L ++
Sbjct: 577 RSGALKSQPLLVPLSLKIGSELVEVAKTLNQPLACLGIELKVRNSEAIMVMGVPSPLRQQ 636

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATM--------ACYGSIRSGRKMQSIEMNR 559
           N+  L+ D++      +   T++    ++L+ +        A    ++S   +   E  +
Sbjct: 637 NLQILIPDLLSYAASINAQSTVKQP-NDMLSALVNWIGIQTAQ---VKSDYTLS--EAVQ 690

Query: 560 LLREMEKN 567
           L+ E+E+ 
Sbjct: 691 LVGELEQL 698


>gi|187918084|ref|YP_001883647.1| DNA mismatch repair protein MutL [Borrelia hermsii DAH]
 gi|119860932|gb|AAX16727.1| DNA mismatch repair protein MutL [Borrelia hermsii DAH]
          Length = 612

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 146/620 (23%), Positives = 266/620 (42%), Gaps = 46/620 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L + ++ +IAAGE I+RP   ++EL++N++D+ + ++E  I  GG     ITDNG 
Sbjct: 3   KIKFLDKSLVQKIAAGEAIDRPCSILRELLDNAIDSGADKIEVFIEEGGIRRILITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKI++  D   I T GFRGEAL SI   S+LT+ S     ++  
Sbjct: 63  GISREDLKICYLPHTTSKINEEQDLEKIQTLGFRGEALSSIAICSNLTITSSTTGEDS-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +  +   GTIV+V +LF   PAR  FLK + +ET +   V    A+ +
Sbjct: 122 QIEVENGTEKYFKKQSAINGTIVDVTNLFHNFPARKRFLKKDSIETKMCLKVFEEKAVTH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-ELNEKSNEITLQGYTG 238
           P + F  +       ++       +  +R+  V GE   NN   ++  +   I ++ +  
Sbjct: 182 PGIDFKLNINN----ELRKVYFKESLIDRVQSVYGEIIDNNKFGKIEAEYENIQMKIFFA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F+R +     +F+N R V++K +   I   ++  +    +PV  L LEIDPR +D N
Sbjct: 238 PPNFSRKDKRNIKIFVNRRPVEEKNLSEAIIDGHSRILTNRNFPVCYLFLEIDPRYIDFN 297

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS-------------------K 339
           +HP K  +RF N   +   I  +I +  ++                              
Sbjct: 298 IHPQKKEVRFFNLPFLPKQIASNINEFFDRGQKEILQDYHNIIIKRQLTNDDHLLHTEDD 357

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV--- 396
              S F      +           N    +   + +  +      D P++      +   
Sbjct: 358 PTNSDFQAYKITQNEALTLDKPQNNKITNIIEDKVKFESQPPTQKDKPSFKNYIQNIFLK 417

Query: 397 ------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                 +  +           Q+   ++I ++ + +  +DQHA HE++I++ +     S 
Sbjct: 418 TSTMLNDLQKPIEKHEFKYIGQLFSEFLIVESDNEVYFIDQHALHEKIIYQIL---IKSE 474

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           KI  + L+  E     E +  ++    E+  ++ I   +       +  IP I +K    
Sbjct: 475 KIIQKLLVPIEFQVDCEDKDKILASELEEYKKIDITVNKIKEQTYQLESIPNICNKYE-- 532

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
                +I + + +  + T+     ++ AT+AC  +I+    + S     L+ E       
Sbjct: 533 ----SVIIQFLKTRKSKTIDSLEADLYATIACRQAIKRNDTISSEFSQFLINEFFNLKL- 587

Query: 571 SQCNHGRPTFIKLKLSDIEK 590
             C HGR  + K+   ++EK
Sbjct: 588 KHCPHGRKIYHKISKFELEK 607


>gi|330899890|gb|EGH31309.1| DNA mismatch repair protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 423

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 215/383 (56%), Gaps = 9/383 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q+   G  +   V+P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A
Sbjct: 142 QVETEGRDMAPRVQPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALA 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V+F           ++    +     R+S + G  F+  A+ +  + N + L G+ G
Sbjct: 202 RFDVAFHLRHNGKTVLSLHEAHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVG 261

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R  A+  Y F+NGR V+DK +   +R AY + +  GR+P  VL  E+DP  VDVN
Sbjct: 262 LPTFSRSQADLQYFFVNGRAVRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVN 321

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPK 352
           VHP K  +RFR+  ++ +F+  ++ +A+      N+ G S   V   +       +  P+
Sbjct: 322 VHPTKHEVRFRDGRMVHDFLYGTLYRALGDVRPENQLGGSVPVVAETRPSGPEAGEFGPQ 381

Query: 353 THLPKYATSLTNTQEKLFLQENR 375
             +      L   Q + F +   
Sbjct: 382 GEMRLANNVLEQPQGEPFSRPAA 404


>gi|304410913|ref|ZP_07392530.1| DNA mismatch repair protein MutL [Shewanella baltica OS183]
 gi|307304916|ref|ZP_07584666.1| DNA mismatch repair protein MutL [Shewanella baltica BA175]
 gi|304350810|gb|EFM15211.1| DNA mismatch repair protein MutL [Shewanella baltica OS183]
 gi|306912318|gb|EFN42742.1| DNA mismatch repair protein MutL [Shewanella baltica BA175]
          Length = 637

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 149/579 (25%), Positives = 258/579 (44%), Gaps = 63/579 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SRV+  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRVDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 61  SGIPKDELALALSRHATSKLHTLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   + P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAHAEGADMAVKIMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F   A+++  + +++ L GY 
Sbjct: 181 VRGDIHFTLTHNGKTVRNYRPAMNEAQYLQRLTQVSGRPFAEQALKIECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   ++  Y ++NGR ++D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-SPVISDTHYFYVNGRLIRDRLVNHAVRQAFAQK-AELEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I+Q++Q A+ + G                           
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELDFVHSSSLDEVEDVFVDAPISATEI 358

Query: 331 ------------------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
                                      +S +  K   +  +  +  T    + +  T   
Sbjct: 359 SAPFVLGADSAQVNVPADTLESAQPLVASAVQVKSAGAGREGASFGTQTNTFGSMATPRD 418

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE-----ATHYQLGIACAQIHQNYIISQ 421
                     S            +     ++          +       A +   Y +  
Sbjct: 419 NSRGNYSAGESRQRTELPSKAAIASYGALLQTPSYSVKDQDYQPSLPMPAILDSQYWVMA 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           T D L ++   +       +++ +   +T +  Q LL P  +       A++ EHD  + 
Sbjct: 479 TADKLSLLPIKSVALATRCQEI-EAKLATGLIGQPLLMPVSVAADADWQAVLDEHDTLIR 537

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           +LG++        + I+++P  + +  + +++ + +  +
Sbjct: 538 QLGLELT-IRYQQLIIKKVPPYIRESQLAKVIPEWLQSL 575


>gi|284929131|ref|YP_003421653.1| DNA mismatch repair protein MutL [cyanobacterium UCYN-A]
 gi|284809590|gb|ADB95295.1| DNA mismatch repair protein MutL [cyanobacterium UCYN-A]
          Length = 555

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 143/601 (23%), Positives = 258/601 (42%), Gaps = 67/601 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L  +I++ IAAGEII+  +  ++EL++N +DA+S+R+E  +         +TDNG 
Sbjct: 4   PIQLLPPEIVSIIAAGEIIDSLASVVRELVDNCIDAKSTRIEISL-NTESWQISVTDNGV 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           GM+ +++    + H T+KI   DD  +I + GFRGEAL SI  V  LT+ SR   +++ G
Sbjct: 63  GMSLQDLRNCARAHHTNKIHKLDDLCHIRSLGFRGEALFSIANVGQLTIKSRHDIEDSKG 122

Query: 119 AQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             I+ + +       V     GTI+ + D+F  +P R   L S + +   I +VI   +I
Sbjct: 123 WCISYNLQGQPVHEKVVAIAPGTIITISDIFGNMPVRRKGLPSFKKQLKAIRNVIENASI 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI---SQVIGEDFINNAVELNEKSNEITLQ 234
            +P +++       +   ++    +     ++          F ++ V+     +     
Sbjct: 183 CHPNITWNIKLNGKSWINISPGKNSQQIIPQLLNQINYNDLKFTSSEVKNPSYKSSSINI 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
                   +R  ++   + INGR V+   +   I  ++   +P GR P+  L L +   +
Sbjct: 243 VLGLPDRCHRSCSDWVKIAINGRVVRLPQLEQAIIRSFGRCLPKGRSPICFLELYVPFEE 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VD N HP KS +           I   +Q  +    +S+SS +        H+       
Sbjct: 303 VDWNRHPIKSEVYLHFIEFWEEQISNIVQDNLR---LSSSSSIVLGDSERLHKLLKSSIE 359

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
              Y+                                 +D +            A  Q++
Sbjct: 360 KNDYS--------------------------------YSDNLNSINKLDLLPLKAVGQVN 387

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + YI+++  +GL +V+QH AHER+++EK++ ++  T I S                 L+ 
Sbjct: 388 KTYIVAEHPNGLWLVEQHIAHERILYEKLQDEWKLTTIDS------------PIVVKLLD 435

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAIL-SKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
              + L  +G++ E FG     IR IP +L  +KN   +L ++           +L+  +
Sbjct: 436 HQVKQLQSIGLELEIFGEQMWTIRTIPQLLVGEKNYLDILLEL-----------SLEKNL 484

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           E+     AC  +IR+G  ++  +M  +L   +   N   C HGRP ++ L  S +   F 
Sbjct: 485 ESAQVATACKSAIRNGVSLELQKMQEILDGWKNTRNPRTCPHGRPIYLPLDESVLSYFFR 544

Query: 594 R 594
           R
Sbjct: 545 R 545


>gi|328948043|ref|YP_004365380.1| DNA mismatch repair protein mutL [Treponema succinifaciens DSM
           2489]
 gi|328448367|gb|AEB14083.1| DNA mismatch repair protein mutL [Treponema succinifaciens DSM
           2489]
          Length = 612

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 132/623 (21%), Positives = 248/623 (39%), Gaps = 47/623 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +++ L+ ++  +IAAGE+I++P   ++E ++N++D+ ++R+   IA GG    ++ DNG 
Sbjct: 6   RVKILNAEVARKIAAGEVIDKPCAIVREFMDNAVDSGATRIRVEIASGGIEKIRVIDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++      H TSKIS   D  N+ T GFRGEAL SI AVS L + S       G 
Sbjct: 66  GMSKEDLIQCAHPHATSKISTETDLLNLSTLGFRGEALSSIAAVSRLEIKS------GGW 119

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++  S  +   + P A   GTI +   LF   PAR  FLK    E      +     +  
Sbjct: 120 KMNASVTEDHIIEPCASTEGTIAQSSGLFENFPARRQFLKRPASEGIQCRTIFEEKILPR 179

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++FTF      +  +    +      + ++      +   ++  +     +     G 
Sbjct: 180 PDIAFTFVNDGEEKLSLPAGQSLKERFVQTNEFFESSDLFYELKHEDSEKNFSFTLIIGE 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  R +    ++++NGR +Q+  ++  I        P G +PV  L +E++P  VD N+
Sbjct: 240 PSVARTSRKDIFIYVNGRKIQEYSLVQAIIYGTQGYFPNGTFPVACLFVEMNPALVDFNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF-------------- 345
           HP+K   RF++   + + +  + +    +  + +    + +  +                
Sbjct: 300 HPSKREARFKDINALHHAVSSTTRNFFKQYTVKSMLTQNAEDKTEAELSNEFSFNSTSIE 359

Query: 346 ----------HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                     HQ+N PK +           +        R S      S D  +    + 
Sbjct: 360 KNNFVKETFSHQNNIPKINSIYSDVKRGIPRTNFSSSGARQSFFKTKTSQDFFHPMKPNY 419

Query: 396 VEESEATHYQLGIACAQIHQN----YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
           + E  + ++                +II++  + L I+DQHAAHER+I+ ++  +    +
Sbjct: 420 IPEISSENFSEYEKGFHFAGCVLGTFIIAEKNETLYIIDQHAAHERMIYNQIMAEAGQKQ 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
                 +        +          + L   G   +  G        +P          
Sbjct: 480 SLLVPYIVQTDSSADDNFIRA---IKDKLEEAGFSCKDCGNGKWEFSTVPIRWKGTEA-D 535

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L +D++D            D I    A+ AC  ++  G  +      ++ +   + P+  
Sbjct: 536 LKKDVLD------RRVNPADMINAAAASTACRSAVMDGTVLDEETAKKIAKGALELPDP- 588

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRP +  +    +  L  R
Sbjct: 589 HCPHGRPVYTTITRQQLFALVKR 611


>gi|54295538|ref|YP_127953.1| DNA mismatch repair protein MutL [Legionella pneumophila str. Lens]
 gi|53755370|emb|CAH16866.1| DNA mismatch repair protein MutL [Legionella pneumophila str. Lens]
          Length = 576

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 148/569 (26%), Positives = 274/569 (48%), Gaps = 24/569 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS  I NQIAAGE+IERP+  +KEL+ENSLDA +S +   +  GG     ++DNG 
Sbjct: 4   RIHQLSPAIANQIAAGEVIERPASVVKELLENSLDAGASVIGVDVNYGGLLQITVSDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+AV  H TSKI   DD  +I + GFRGEAL SI +V+ +T++S+P + +   
Sbjct: 64  GIFGVDLPLAVAAHATSKIRTLDDLYSIDSMGFRGEALASIASVAKVTIISKPEEQDNAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +  ++ P A N GT ++V DLF+  P R  FLK+E++E   I  V++R A++ 
Sbjct: 124 MLRVEG-ENRTLSPCARNIGTTIDVSDLFYNAPVRKRFLKNEKLEFQAIEMVVKRFALSA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++ T    K   + +    +      R+ +++G  F+  A+ L+ + + + L G+   
Sbjct: 183 PRIALTLKHNKKLIFSLPPALSEQAKAIRMGRILGNTFMREAIFLDVEHSGMRLYGWISN 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   ++ ++++N R V+DK +   ++ AY   +  GR+P+ +L   +   +VDVNV
Sbjct: 243 HRLQRSQNDRQWIYVNQRMVKDKLLQHAVKQAYDGLLHAGRFPICLLYFTLPASEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+ P ++ +F    + KA+ +  +  S        +S   +       P + 
Sbjct: 303 HPTKHEVRFQQPRLVHDFFTSQLTKAL-QSTLDHSDTREYAYAASSSNEQQNTVSEPSHI 361

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +   + E       R  +     +   +        + S   H +       +++ +I+
Sbjct: 362 CNDRESHEAA-----RALSPSWSANSLSSSVTSKGYKKTSSVYHPETEFQWVILNERFIL 416

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                   + D  A  +  I +++ Q      + S+ LL      L         +   +
Sbjct: 417 VFIKQRPYLADLVALFQEWIEKQLMQKAL--PLESRPLLISIRYPLPNQWIHKPEQLKRE 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L R+GI+ E    + + IR IP      ++ +   +I+ E+    T        E ++A 
Sbjct: 475 LARVGIQIEYSNADDLLIRSIPLNAPYLDVRRFF-NILCELDFFDT--------EQLIAL 525

Query: 540 MACYGSIRSGRKMQSI---EMNRLLREME 565
           ++    I   +++      EMN++L E+ 
Sbjct: 526 IS-RSQIFDPKQLTVEERIEMNQVLLELS 553


>gi|213421364|ref|ZP_03354430.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 322

 Score =  363 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 127/322 (39%), Positives = 186/322 (57%), Gaps = 4/322 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I ++IRR+A+
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A   V+   S       +    + +G    R+  + G  F+  A+ +  +  ++TL+G+ 
Sbjct: 181 ARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWV 240

Query: 238 GIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P           Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVD
Sbjct: 241 ADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD 300

Query: 297 VNVHPAKSYIRFRNPTIIRNFI 318
           VNVHPAK  +RF    ++ +FI
Sbjct: 301 VNVHPAKHEVRFHQSRLVHDFI 322


>gi|254498702|ref|ZP_05111419.1| DNA mismatch repair protein MutL [Legionella drancourtii LLAP12]
 gi|254352082|gb|EET10900.1| DNA mismatch repair protein MutL [Legionella drancourtii LLAP12]
          Length = 545

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 151/521 (28%), Positives = 256/521 (49%), Gaps = 44/521 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L   I NQIAAGE+IERP+  +KEL+ENSLDA +  +   I  GG +  +I+DNG 
Sbjct: 4   RIHQLPALIANQIAAGEVIERPASVVKELLENSLDAGADAITVEIGYGGLNQIKISDNGV 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+A+  H TSKI+  +D   I + GFRGEAL SI +V+ +++ S+P + +T  
Sbjct: 64  GIVADDLPLAIAAHATSKINTLNDLYAIDSMGFRGEALASIASVAKVSISSKPAEQDTAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G + +++ P A   GT ++V DLFF  P R  FLKSE++E   I  V++R A+A 
Sbjct: 124 MLRVHGME-TTLSPCARTQGTTIDVVDLFFNAPVRKRFLKSEKLEFQAIETVVKRFALAA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++ T          +   S       RI++++G  F+  A+ L+ +   + L G+T  
Sbjct: 183 PGIALTLKHNGKQVLSLPAASNEQAQLTRITRILGSAFVKEAIYLDVERGVMRLYGWTSG 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             F R   ++ +V+IN R V+DK I   I+ AY + +  GR+P  +L L ID  +VDVNV
Sbjct: 243 ANFQRSQNDRQWVYINQRMVKDKLINHAIKQAYGDLLHPGRFPSCLLYLTIDRAEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+ P ++ +F    +  A+             +     + +        +  
Sbjct: 303 HPTKHEVRFQQPRLVHDFFTSQLTAAL-------------RAEPQANTEEPYALVAHEQT 349

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            ++     +LF    R +  D+                          +    ++  Y++
Sbjct: 350 KAICEPYPQLFALTPRSAPVDVE-------------------------VPWVSLNSQYLL 384

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +       IVD  A  + L+ E++     +  + S+ LL P    +       I E   +
Sbjct: 385 AFIQQQPYIVDVFALQKYLLQEQL--TQQNLPLASRPLLVPIRYTITPHLRQKITELSYN 442

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           L +LGI  E  G N + IR IP  +   ++ +L  D +  +
Sbjct: 443 LSQLGILLELSGENEVLIRTIPLSIPYLDL-RLFLDAVATL 482


>gi|238898487|ref|YP_002924168.1| enzyme in methyl-directed mismatch repair [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466246|gb|ACQ68020.1| enzyme in methyl-directed mismatch repair [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 590

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/584 (26%), Positives = 272/584 (46%), Gaps = 29/584 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++E  I  GG    QI DNG
Sbjct: 1   MPIKILPTELANQIAAGEVVERPASVVKELVENSLDAGATKMEIDIHRGGIEQIQICDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ E++P+A+ RH T KI+  +D  +I + GFRGEAL SI +VS L L SRP +    
Sbjct: 61  CGISKEDLPLALARHATDKIASLEDLQSILSMGFRGEALASISSVSRLQLTSRPAEQEDA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +++P +   G+ +EV +LF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYTEGRDMNVTIKPASHPVGSTIEVLNLFYNTPARRKFLRTEKTEWQYIDEVVRRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS + S       +     +      R+ ++ G  F+  A+ L+   + ++L+G+ 
Sbjct: 181 SRFDVSISLSHNGKLLRQYVRVQSGSQRERRLLRLCGAPFLKQALALSFDHSGLSLKGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                        Y FIN R ++D+ I   +R AY       + P  VL L+IDPRQ+DV
Sbjct: 241 A-EANGPKMNEIQYFFINRRIIRDRVINHAVRQAYEAISTGPKNPSYVLYLDIDPRQIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF    ++ +FI  +I  A++    S+S   +    +      +PK     
Sbjct: 300 NVHPTKQEVRFHQTRLVHDFIYHAITNALSHSACSSSDSSADIEQNDSVVKESPKIRKEN 359

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLGIACAQIH 414
            A++  NT  +  +   +     L   D          +++    E   +      + + 
Sbjct: 360 RASAGRNTYVEPDIITKQTDEASLSFHDTSRTEHKETSLKKDILGEVNEHYFWRVLSIVS 419

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + +  + + ++    A    + +K+     S K   Q LL P    L + E     
Sbjct: 420 SCYALIEYGNNIALLSLPEADR--LLKKVGLTPPSEKSRIQPLLIPVKFTLEKAEMMACE 477

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            H   L  +GI+        + +R I   L   N+ +L+  ++  + +       ++  +
Sbjct: 478 RHQHLLTLIGIELVIEKDTTV-LRGISLALRAHNMQKLIPKLLVYLSEH-APLLPENLAD 535

Query: 535 NILATMACYGSIRSGRKM----QSIEMNRLLREMEKNPNSSQCN 574
            + A +         + +       +  +LL + E+      C 
Sbjct: 536 WVAAQL---------QSLPHEWTVSQAVQLLTDFER-----YCP 565


>gi|261749184|ref|YP_003256869.1| putative DNA mismatch repair protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497276|gb|ACX83726.1| putative DNA mismatch repair protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 588

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 152/597 (25%), Positives = 276/597 (46%), Gaps = 19/597 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L +K+INQIAAGE+I+RPS  +KEL+ENS+DA++  ++  I   GK+  Q+ DNG 
Sbjct: 5   SIQLLPKKVINQIAAGEVIQRPSSVLKELMENSIDAKAKMIDVFIRDSGKTLIQLIDNGN 64

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  M+ QR+ TSKI  ++D   I T GFRGEAL SI  +S L + ++  +N  G 
Sbjct: 65  GMSFNDARMSFQRYTTSKIKTNEDLFRIRTKGFRGEALASIAFISELEIQTKNKENVMGF 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I   KI    P+ M  GT + V+++F+ IPAR  FLKS ++E   I +   ++ +A+
Sbjct: 125 HLFIEEGKIKKQIPINMLQGTRISVKNIFYKIPARRRFLKSSRIEFKHIVNEFYKIVLAH 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + + F         + F     +  +RI ++         + +  K + I ++G+   
Sbjct: 185 RDIVYRFYHNDK----ILFSFKKASLKDRIQEIF-SKKNKILIPIIIKKSRILIEGFVSH 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P          ++F+N R++ + F+   I +AY   +   +     + + IDP  V+ N+
Sbjct: 240 PDAYVQRKGDQFLFVNQRSITNNFLHRKILSAYDGILKNLKTVSYFIFIHIDPSLVNWNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K   +     ++ N I Q I+  +  +       L+    S     +     L  + 
Sbjct: 300 HPTKKEAKLEEEDLVGNMIQQEIKNVLCCQYKVKKEDLNHSDFSFSCNSSKEPFFLMNHY 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI---HQN 416
            S     E L  ++  +   +L+     +    +    +  +++              + 
Sbjct: 360 NSFF---EDLSYKKKVIQLENLIQKMKKSDFFIDIHFTKKLSSYVSNEKDIKTFQINGKY 416

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
            I     + L++VDQH AH+ ++FE         K+ SQ  L P  + LL+ E   +   
Sbjct: 417 IIFPWKEENLILVDQHRAHQNILFE-FFFQKRKKKLISQQFLFPIEVRLLKHELNSLNNI 475

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            +DL  +G     F   +  +  IP  + +     +L +I   I+  +     ++  + +
Sbjct: 476 KDDLIEMGFHL-YFCKKSAYLYSIPEKIHQ----NILVEIFHNILTYNFAKGEKNNKKIL 530

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + ++A   +I+ G K+ S +M  L+R+     N+S    G P F  L  + ++K F 
Sbjct: 531 IKSIAQSAAIKYGTKLHSNKMKCLIRDFFSCENTSYTYTGDPVFFVLNNNFLKKQFR 587


>gi|86609718|ref|YP_478480.1| DNA mismatch repair protein [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558260|gb|ABD03217.1| putative DNA mismatch repair protein MutL [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 582

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 152/595 (25%), Positives = 259/595 (43%), Gaps = 68/595 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L+ + I Q+AAGE+I+    A++EL+EN+LDA+++R++  I    +   ++ DNG 
Sbjct: 3   KIQPLNPERIAQMAAGEVIDSLGAALRELLENALDAQATRIQVEIW-PSRWQVRVADNGQ 61

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+ + E+    +RH TSK+        + GFRGEAL S+  +  L + +R   +  G   
Sbjct: 62  GIPASELEQVARRHTTSKLDG-----CSLGFRGEALHSLARLGSLAIQTRHVSDAHGWLA 116

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           A   + ++   +P A   GT+V V DLF   P R   L   +        +++  A+A+P
Sbjct: 117 AYDRQGELIHKQPAATALGTVVTVADLFADWPLRRRALPQTRPLL----TLVQNAALAHP 172

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VS+           +       +  + + QV+ +    +      +  +   +   G+P
Sbjct: 173 WVSWQVHQEGQLLLSLW---PGKSLQDLLLQVLPQVDPTDLRYRRIQDGDSDWEVVLGLP 229

Query: 241 -TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +R + +   V +NGR VQ       I++ +   +P  R+P+VV+ L + P QVD N 
Sbjct: 230 DRLHRPHPDWIRVAVNGRFVQMPDWQRLIQSVFHHALPRHRHPLVVVHLRLPPEQVDWNR 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAKS +   N T  +  + Q +   +       S                      + +
Sbjct: 290 HPAKSELYLENLTARQEQLRQHLHSLLQLGSGQAS----------------------RRS 327

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L    E   +          LP  D   S                  A AQ+H+ YI+
Sbjct: 328 VHLIRASEAKVVYRVSPDFQSHLPPSDRPTSPLPP------------LRALAQLHRIYIL 375

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++   GL +V+QH AHER+ +E +RQ +      +   L                   E 
Sbjct: 376 AEHPQGLWLVEQHLAHERVRYEYIRQHWQLVAPETPITLQGLSPQA-----------LER 424

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L +LG++ E FGPN   IR IP  L  ++      ++   +++ S    LQ        T
Sbjct: 425 LEQLGLEPEPFGPNTHLIRRIPLALGSEDPE----EVQGSLLELSGCQDLQ----AAQVT 476

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC G++R+G  +   +M +LL   ++  N   C HGRP ++ L   D+ + F R
Sbjct: 477 VACRGALRNGIPLTLEQMQKLLEAWQRTANPHTCPHGRPVYLALAERDLARYFRR 531


>gi|317498493|ref|ZP_07956787.1| DNA mismatch repair protein MutL [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894186|gb|EFV16374.1| DNA mismatch repair protein MutL [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 495

 Score =  363 bits (932), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 138/496 (27%), Positives = 233/496 (46%), Gaps = 44/496 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L +K I+ IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG +  ++TDNG 
Sbjct: 3   KIQLLDQKTIDNIAAGEVIERPASVVKELVENAVDAKANAVTVEIKDGGMTLIRVTDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI   +D  ++ + GFRGEAL SI AV+ + L+++  ++ +G 
Sbjct: 63  GIPKDQVKTAFLRHATSKIRSVEDLLSVSSLGFRGEALSSISAVAQVELVTKTAESFSGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G +  +   +    GT   V++LF+  PAR  FLKS   E   +  ++  +A+++
Sbjct: 123 SYKIYGGEEEAFDDIGAPDGTTFLVKNLFYNTPARRKFLKSATTEAGYVEQMMVHIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F     N+    + S NG   + I  + G D     + L  ++ ++ + G+   
Sbjct: 183 PEISFKFIHNNKNK---IYTSGNGKVKDIIYHIYGRDVAGALIPLEAQNEDVKVTGFVAK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    FINGR ++   I   I   Y       RYP V L  +I+   +DVNV
Sbjct: 240 PYVSRGNRNYESYFINGRYIKSSIIYKAIEEGYRTFTMKHRYPFVCLDFKINQELLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------------------------- 334
           HP K  IRFRN   I   ++ +++ A+ +K +                            
Sbjct: 300 HPTKMEIRFRNGREIYELVVDAVRAALLQKDLVQDVLRETPKKKELPKTKEVKKPEPFEV 359

Query: 335 ----------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                         + +     + + P    P  + S  NT++  +   N  +     P 
Sbjct: 360 NRRKEEVQKVDQQGQGVQQQVEKPSHPVKKTPTASESSKNTKKPTYAGLNYNTQKKEFPQ 419

Query: 385 DDPTYSEDNDPVEESEA----THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                   N      +               Q+ + Y + +  D L I+DQHAAHE++ +
Sbjct: 420 YKTDELSSNQMTLREDPVFSVQARPDRKILGQLFKTYWLIEYEDQLFIMDQHAAHEKVNY 479

Query: 441 EKMRQDFNSTKITSQT 456
           E++ ++F   K T++ 
Sbjct: 480 ERLMKNFKEKKYTARD 495


>gi|330445000|ref|ZP_08308654.1| DNA mismatch repair protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328493118|dbj|GAA03151.1| DNA mismatch repair protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 731

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 125/351 (35%), Positives = 192/351 (54%), Gaps = 3/351 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGSRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  KGIPKDELSLALSRHATSKITTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTEAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT +EV DLFF  PAR  FL++E+ E N I ++I+R+A+
Sbjct: 121 WSAYAEGRDMEVQLKPAAHPVGTTLEVLDLFFNTPARRKFLRTEKTEFNHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+ T         +     T+     R++   G  F+ +A+ +     ++ L G+ 
Sbjct: 181 SRFDVAITLRHNGKIIRQYRAAQTDIQKERRLATACGSGFLQHALVVELAHGDLKLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                 R   +  Y ++NGR ++DK I   IR AY  ++   +Y   VL +++DP QVDV
Sbjct: 241 CSSQGARAQNDIQYCYVNGRMMKDKLINHAIRQAYESSLRADQYAAYVLYIDVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           NVHPAK  +RF    ++ +FI Q++Q A+ +  +       +    +  Q 
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALQSALQQGALEEDQHHYQSPTRASAQS 351



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 99/282 (35%), Gaps = 19/282 (6%)

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           H        R+P    ++   + +         + +  S+   +S  +   P+   P   
Sbjct: 429 HSTPYQPSQRDPREHHSYEHNASKSRSGNYESQSYAGTSQAKSASSSRPVQPEGPTPAEI 488

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL------------G 407
            +     E     E +  T +   S+        +    +      +            G
Sbjct: 489 KAYQQLLETEAPAETQQVTPEARSSESRVAEPRREWQATAPQPVVSVKQNALGGKATGLG 548

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
            A   + + Y++      +V++      E L +    +   +  +  Q LL P  + +  
Sbjct: 549 KALCLVDERYLLMHQDPQVVLLSLD-KAEHLRYIGQFRLAQTEGLKPQPLLIPLSVPVEG 607

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
              A   +H   L +LGI+ +  G N I I  +   L ++N+ QL+ +++  ++  S   
Sbjct: 608 DLIACAEQHATLLKQLGIQLKAKGKNGIIIMSVCMPLRQQNLQQLIPNLLTYLLAVSEDQ 667

Query: 528 TLQDRIENILATMA--CYGSIRSGRKMQSIEMNRLLREMEKN 567
             Q   + +L  +A  C   + +   +   +  +L+ E+E+ 
Sbjct: 668 EAQGW-DKLLNWLAEQCISPV-ANYSLS--QAIQLVSELEQL 705


>gi|238899349|ref|YP_002925031.1| enzyme in methyl-directed mismatch repair [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229467110|gb|ACQ68883.1| enzyme in methyl-directed mismatch repair [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 590

 Score =  363 bits (931), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 155/584 (26%), Positives = 273/584 (46%), Gaps = 29/584 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++E  I  GG    QI DNG
Sbjct: 1   MPIKILPTELANQIAAGEVVERPASVVKELVENSLDAGATKMEIDIHRGGIEQIQICDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ E++P+A+ RH T KI+  +D  +I + GFRGEAL SI +VS L L SRP +    
Sbjct: 61  CGISKEDLPLALARHATDKIASLEDLQSILSMGFRGEALASISSVSRLQLTSRPAEQEDA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  ++ +++P +   G+ +EV +LF+  PAR  FL++E+ E   I +V+RR+A+
Sbjct: 121 WQAYTEGRDMNVTIKPASHPVGSTIEVLNLFYNTPARRKFLRTEKTEWQYIDEVVRRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS + S       +     +      R+ ++ G  F+  A+ L+   + ++L+G+ 
Sbjct: 181 SRFDVSISLSHNGKLLRQYVRVQSGSQRERRLLRLCGAPFLKQALALSFDHSGLSLKGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                        Y FIN R ++D+ +   +R AY       + P  VL L+IDPRQ+DV
Sbjct: 241 A-EANGPKMNEIQYFFINRRIIRDRVVNHAVRQAYEAISTGPKNPSYVLYLDIDPRQIDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF    ++ +FI  +I  A++    S+S   +    +      +PK     
Sbjct: 300 NVHPTKQEVRFHQTRLVHDFIYHAITNALSHSACSSSDSSADIEQNDSVVKESPKICKEN 359

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLGIACAQIH 414
            A++  NT  +  +   +     L   D          +++    E   +      + + 
Sbjct: 360 RASAGRNTYVEPDIITKQTDEASLSFHDTSRTEHKETSLKKDILGEVNEHYFWRVLSIVS 419

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + +  + + ++    A    + +K+     S K   Q LL P    L + E     
Sbjct: 420 SCYALIEYGNNIALLSLPEADR--LLKKVGLTPPSEKSLIQPLLIPVKFTLEKAEMMACE 477

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
            H   L  +GI+        + +R I   L   N+ +L+  ++  +    T   L++  +
Sbjct: 478 RHQHLLTLIGIELVIEKDTTV-LRGISLALRAHNMQKLIPKLLLYLSAHDT-LLLENFAD 535

Query: 535 NILATMACYGSIRSGRKM----QSIEMNRLLREMEKNPNSSQCN 574
            + + +         + +       +  +LL + E+      C 
Sbjct: 536 WVASQL---------QSLPHEWTVSQAVQLLTDFERC-----CP 565


>gi|114048922|ref|YP_739472.1| DNA mismatch repair protein [Shewanella sp. MR-7]
 gi|123030290|sp|Q0HR40|MUTL_SHESR RecName: Full=DNA mismatch repair protein mutL
 gi|113890364|gb|ABI44415.1| DNA mismatch repair protein MutL [Shewanella sp. MR-7]
          Length = 644

 Score =  363 bits (931), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 148/586 (25%), Positives = 253/586 (43%), Gaps = 70/586 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 61  SGIPKDELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F + A+ +  + +++ L GY 
Sbjct: 181 VRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR V+D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-STVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQK-AEVEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH-----QDNAPK 352
           NVHPAK  +RF     + ++I+Q++Q A+ + G        +             ++  +
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELGFERPFEPSSPQVRDEVSLSESGAQ 358

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
           T    +A  L + + K     +  S  D   ++    S   +   +  +T    G+    
Sbjct: 359 TQTEHHAFELQSPESKTHSTWDEASRVDTSRAEISRDSSLGERTRDIASTRPYAGVQSNA 418

Query: 413 IHQNYIISQTTDGLVIVDQHAAHE-------RLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                +  ++  G    +  A  E           E ++    + +      +      L
Sbjct: 419 YGSMAVPRESRSGST-GESRARAELPSKVAIASYGELLQTPSYNVQDKPYQPVLAMPAIL 477

Query: 466 LEGECALIME-------------------------------------------------- 475
                 L  E                                                  
Sbjct: 478 NGQYWVLAQEQNLSLLPIQSVALATRSHEIETKLATGLIGQPLLMPVSIAADTDWPALLE 537

Query: 476 -HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            H+  + +LG++        + I+++P  L    + +++ + +  +
Sbjct: 538 EHETLIRQLGLELT-IRYQQLIIKKVPPYLRDSQLAKVIPEWLQSL 582


>gi|269103609|ref|ZP_06156306.1| DNA mismatch repair protein MutL [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163507|gb|EEZ42003.1| DNA mismatch repair protein MutL [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 687

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 136/428 (31%), Positives = 215/428 (50%), Gaps = 8/428 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIDKGGSRTIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +V+ LTL SR  +    
Sbjct: 61  KGIPKDELGLALSRHATSKISSLDDLEAIMSLGFRGEALASISSVARLTLTSRTAEQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  ++   +P A   GT VEV DLFF  PAR  FL++E+ E   I ++I+R+A+
Sbjct: 121 WSAYAEGRDMAVQLKPAAHPVGTTVEVLDLFFNTPARRKFLRAEKTEFAHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+ T         +     T      R++   G+ F+ +A+ +     ++ L G+ 
Sbjct: 181 SRFDVNITLRHNGKVIRQYRVAQTQAQKERRLATACGQGFLQHALVVELTHGDLKLSGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
              +  R   +  Y ++NGR ++DK I   IR AY  ++   +Y   VL ++++P  VDV
Sbjct: 241 CSSSGARSQNDIQYCYVNGRMMKDKLINHAIRQAYESSLAPEQYAAYVLFIDLNPHDVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG-----ISTSSVLSKKMISSFHQDNAPK 352
           NVHPAK  +RF    ++ +FI Q IQ A+ +        S   + +K  I S +  +A  
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQGIQSALQQSDDFIEIQSPQRLSAKANIDSEYSHHAVP 360

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
               +      +   K   ++ R  T+    S        N     S+    + G     
Sbjct: 361 DATYQAIEQTPDYPNKQPAKQWREQTHYETGSTKTAREISNHSQPPSDYRSEKQGAIINT 420

Query: 413 IHQNYIIS 420
             ++Y  +
Sbjct: 421 PSRHYGTT 428



 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 95/253 (37%), Gaps = 9/253 (3%)

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
            II +  +             S   ++++ +       + + A  L  T     +    +
Sbjct: 416 AIINTPSRHYGTTNYRAEGGPSPAEVAAYQRLIQTPDAVEERA--LDTTFNDAHMNSPTV 473

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
           + +++     P+  E         +    LG A   + + Y++      L ++    A  
Sbjct: 474 TESNVWQEYAPSMPEPIRQHSSVSSEVEGLGKALVIVEKQYLVVSRNQNLALLSLEVAQN 533

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
             I  +++    S  +  Q LL P  I +         +H   L +LGI+ +  G  ++ 
Sbjct: 534 LRIQGQLKLA-QSEGLKPQPLLIPHSIPVSPELLESAQQHQALLQKLGIQLKAKGKQSLI 592

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ--DRIENILATMACYGSIRSGRKMQS 554
           I  +   L ++N+ QL+ +++  +   +   T Q  D++ +  A   C   + +  +   
Sbjct: 593 IMSVCMPLRQQNLQQLIPNLLTYLGSIAEDPTQQGWDKLLDWFAQQ-C---VVAQEQYSL 648

Query: 555 IEMNRLLREMEKN 567
            +  +L+ E+E+ 
Sbjct: 649 SQAIQLVTELEQL 661


>gi|119953008|ref|YP_945217.1| DNA mismatch repair protein MutL [Borrelia turicatae 91E135]
 gi|254766160|sp|A1QZ05|MUTL_BORT9 RecName: Full=DNA mismatch repair protein mutL
 gi|119861779|gb|AAX17547.1| DNA mismatch repair protein MutL [Borrelia turicatae 91E135]
          Length = 612

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 149/620 (24%), Positives = 269/620 (43%), Gaps = 46/620 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++ +IAAGE I+RP   ++EL++NS+D+ + ++E  +  GG     ITDNG 
Sbjct: 3   KIKFLDRSLVQKIAAGEAIDRPCSILRELLDNSIDSGADKIEVFLEEGGIRRILITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKI++  D   I T GFRGEAL SI   S+LT+ S     ++  
Sbjct: 63  GISKEDLKICYLPHTTSKINEEKDLEKIQTLGFRGEALSSIAICSNLTITSSTTGEDS-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI +        +  +   GTIV+V +LF   PAR  FLK + +ET +   V    A+ +
Sbjct: 122 QIEVENGTEKYFKKQSAINGTIVDVTNLFHNFPARKRFLKKDSIETKMCLKVFEEKAVTH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-ELNEKSNEITLQGYTG 238
           P + F  S       ++       +   R+  V GE   NN   ++  +   + ++ +  
Sbjct: 182 PGIDFKLSLNN----ELRKVYFKESLINRVQSVYGEIIENNKFGKIETEYENVQMKIFFA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F+R +     +F+N R V++  +   I   ++  +    +P+  L LEIDPR VD N
Sbjct: 238 PPNFSRKDRRNIKIFLNRRPVEEHNLSEAIIDGHSRILTNRNFPICYLFLEIDPRYVDFN 297

Query: 299 VHPAKSYIRFRN--------PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           +HP K  +RF N         + I  F  +  ++ +                   H ++ 
Sbjct: 298 IHPQKKEVRFFNLPFLPKQVSSNINEFFDRERKEILQDYHNIIIKRQITNDAHLLHPEDD 357

Query: 351 PKTHLPKYATSLTNTQEKLFLQEN-----------RLSTNDLLPSDDPTYSEDNDPV--- 396
           P     +    + N    L   +N           +  + + +  D P++      +   
Sbjct: 358 PTNSDFQTYEIIQNESLILDKPQNNKITNIIEDKVKFESQNPIQKDKPSFKSYIQNILLE 417

Query: 397 ------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                 +  +           Q+   ++I +  + +  +DQHA HE++I++ +    NS 
Sbjct: 418 TSTIANDFQKPIAKHEFKYRGQLFSEFLIVEKDNEVFFIDQHALHEKIIYQTL---INSE 474

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           KIT + L+  E     E    ++    E+  +L I   +       +  IP I +K    
Sbjct: 475 KITQKLLIPIEFQVDCEDTDKILASELEEYKKLDIIVTKIKEQTYQLESIPNICNKYE-- 532

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
               ++I +   +  + T+     ++ AT+AC  +++    + S     L+ E       
Sbjct: 533 ----NVIIQFFKTRKSKTIDSLETDLYATIACRQAVKCNDTISSEFSQFLINEFFNLKL- 587

Query: 571 SQCNHGRPTFIKLKLSDIEK 590
             C HGR  + K+   ++EK
Sbjct: 588 KYCPHGRKIYHKISKFELEK 607


>gi|94985638|ref|YP_605002.1| DNA mismatch repair protein MutL [Deinococcus geothermalis DSM
           11300]
 gi|94555919|gb|ABF45833.1| DNA mismatch repair protein MutL [Deinococcus geothermalis DSM
           11300]
          Length = 549

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 243/598 (40%), Gaps = 72/598 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L   I   IAAGE++ RP   ++EL+EN+LDA ++R+E  + GGG +  ++ DNG
Sbjct: 1   MTIHLLPPHIARLIAAGEVVSRPLDVVRELVENALDAGATRIEVEVEGGGLTLVRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+ ++ + +A  RH TSK+   +     + T GFRGEAL +      L L++RP     
Sbjct: 61  AGIAADSVALAPVRHATSKLTPEATAVERVSTLGFRGEALWAAAQAGELQLVTRPA-AQV 119

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           GA    +  +  +VR  +   GT V V +LF  +PARL       VE   IT ++ R  +
Sbjct: 120 GAAEVRAAGEAVTVRRTSAPAGTTVTVCNLFAHLPARLRTQAPPAVEVREITALVSRYVL 179

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +P + +        R          +    ++ V G    N  + +  +     ++G  
Sbjct: 180 HHPGLHWRLLVDGEARLT----HAPADHRGAVASVYGPLSANRVLRVEAE----GVRGVV 231

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFI-LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   R   ++ +  +NGR +         +   +AE +P G  P+ VL L + P   +
Sbjct: 232 SRPELTRARRDRMHFSVNGRPILAPPELEKAVIEGFAELLPAGVAPLCVLDLTVAPEDHN 291

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            NVHPAK  +   +                   G++     +     + H        L 
Sbjct: 292 PNVHPAKQVVALADL-----------------PGVAARVRAAVAEALAAHPLARVAPALI 334

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                        F                                            + 
Sbjct: 335 APPEPQATPTRGAFPA----------------------------------LTLVGVYQEL 360

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y+++Q    L IVD HAAHER ++E++ ++          L  PE++ L   + A + E 
Sbjct: 361 YLLAQGEGDLWIVDAHAAHERALYERLTRELAEAPP--FELPEPELLHLTPEQVARLHER 418

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
             DL   G+  E FG     +R +PA L+   +P+L   II+  +  S      D   ++
Sbjct: 419 AADLRAWGLTLEDFGAGLARLRTLPAALAALPVPRLHEQIIEAALGDS-----PDPRRDV 473

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LA +AC  ++++G  + +     +L  +        C HGRPT ++L   D+   FGR
Sbjct: 474 LARLACAPALKAGM-LDAGRGESVLAALAGCEQPWSCPHGRPTVLRLSERDLAHAFGR 530


>gi|126659074|ref|ZP_01730214.1| DNA mismatch repair protein [Cyanothece sp. CCY0110]
 gi|126619602|gb|EAZ90331.1| DNA mismatch repair protein [Cyanothece sp. CCY0110]
          Length = 554

 Score =  362 bits (929), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 153/586 (26%), Positives = 262/586 (44%), Gaps = 66/586 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR LS +I+N IAAGE+I+  +  ++EL+EN++DA+++R+   I        ++ DNG 
Sbjct: 4   PIRLLSSEIVNLIAAGEVIDSLAAVVRELVENAIDAKATRLTISIF-PELWQVEVADNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           G++ E +    + H TSKI   DD   I + GFRGEAL SI  V  LT+ SR       G
Sbjct: 63  GISLENLRHCAKAHHTSKICDLDDLWKITSLGFRGEALFSITQVGQLTIKSRDATDYQVG 122

Query: 119 AQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                    ++       M PGTIV   DLF +IP R   L + + +   I  +I  M++
Sbjct: 123 WCVDYNQQGEVIKEETSPMAPGTIVTASDLFGSIPVRRQGLPTLKQQLKAIQGIIDNMSL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFIN-NAVELNEKSNEITLQG 235
            +P++++       +   ++   T     P+ +  V   D    +   +     E  L+ 
Sbjct: 183 CHPQITWQVHHNHKSWLTISPGKTPQQILPQLLKSVHFHDLQFLSETIVTPSQEEAKLEM 242

Query: 236 YTGIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
             G+P        +   + +NGR V+   +  T+  A + T+P GR+PV  L  +I P +
Sbjct: 243 VLGLPDRTSRGRLDWLKIAVNGRVVRSPQLEQTVLAALSRTLPKGRFPVGFLHFKIPPSE 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +D N HPAK+ I  ++    ++ + + I+K +    ++ ++    + +            
Sbjct: 303 IDWNRHPAKTEIYLQSLQFWQDKVTEIIEKVLKLSPLTITTAGQNQRVKKL--------- 353

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
                         L   ENR                 N    +S    +    A  Q++
Sbjct: 354 --------------LKASENR--------------GIYNIASSDSNELEFMKLRAVGQVN 385

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + YI+++ + GL +V+QH AHER+++E+++ ++    +    +LT            L  
Sbjct: 386 KTYIVAEHSQGLWLVEQHIAHERVLYEQIQDEWQLIPVKQAIILT-----------ELSS 434

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           +  E L R+ +  E FG N  AIR IP +L  +       D  D +I+ S    L+    
Sbjct: 435 KQVEQLERISVDIEPFGDNTWAIRNIPKLLENRE------DSPDALIELSLGGDLETAQV 488

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            +    AC  +IR+G  ++  +M  LL   +K  N   C HGRP +
Sbjct: 489 AV----ACRSAIRNGMVLELTQMQDLLDSWKKTRNPRTCPHGRPIY 530


>gi|315269202|gb|ADT96055.1| DNA mismatch repair protein MutL [Shewanella baltica OS678]
          Length = 637

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 149/579 (25%), Positives = 256/579 (44%), Gaps = 63/579 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SRV+  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRVDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIPKDELALALSRHATSKLHTLDDLEAILSFGFRGEALASISSVSRLTLTSRTADQTEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAHAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               +  T +                 + +R++QV G  F   A+++  + +++ L GY 
Sbjct: 181 VRGDIHLTLTHNGKTVRNYRPAMNEAQYLQRLTQVSGRPFAEQALKIECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   ++  Y ++NGR ++D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-SPVISDTHYFYVNGRLIRDRLVNHAVRQAFAQK-AELEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I+Q++Q A+ + G                           
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELNFVHSSSLDEVEDVFVDAPTSATEI 358

Query: 331 ------------------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
                                      +S +  K   +  +  +  T    + +  T   
Sbjct: 359 SAPFVLGADSAQVNVPADTLESAQPLVASAVQVKSAGAGREGASFGTQTNAFGSMATPRD 418

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE-----ATHYQLGIACAQIHQNYIISQ 421
                     S            +     ++          +       A +   Y +  
Sbjct: 419 NSRGNYSAGESRQRTELPSKAAIASYGALLQTPSYSVKDQDYQPSLPMPAILDGQYWVMA 478

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           T D L ++   +       +++ +   +T +  Q LL P  +       A++ EHD  + 
Sbjct: 479 TADKLSLLPIKSVALATRCQEI-EAKLATGLIGQPLLMPVSVAADADWQAVLDEHDTLIR 537

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           +LG++        + I+++P  + +  + +++ + +  +
Sbjct: 538 QLGLELT-IRYQQLIIKKVPPYIRESQLAKVIPEWLQSL 575


>gi|160876999|ref|YP_001556315.1| DNA mismatch repair protein [Shewanella baltica OS195]
 gi|189030411|sp|A9L3W1|MUTL_SHEB9 RecName: Full=DNA mismatch repair protein mutL
 gi|160862521|gb|ABX51055.1| DNA mismatch repair protein MutL [Shewanella baltica OS195]
          Length = 638

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 149/579 (25%), Positives = 256/579 (44%), Gaps = 63/579 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SRV+  I  GG    +I DNG
Sbjct: 2   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRVDIEIDKGGSKLIKIRDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR       
Sbjct: 62  SGIPKDELALALSRHATSKLHTLDDLEAILSFGFRGEALASISSVSRLTLTSRTADQTEA 121

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 122 WQAHAEGADMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               +  T +                 + +R++QV G  F   A+++  + +++ L GY 
Sbjct: 182 VRGDIHLTLTHNGKTVRNYRPAMNEAQYLQRLTQVSGRPFAEQALKIECQHDDLRLSGYL 241

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +   ++  Y ++NGR ++D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 242 QSPW-SPVISDTHYFYVNGRLIRDRLVNHAVRQAFAQK-AELEQPGYVLMLDIDPHQVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--------------------------- 330
           NVHPAK  +RF     + ++I+Q++Q A+ + G                           
Sbjct: 300 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELNFVHSSSLDEVEDVFVDAPTSATEI 359

Query: 331 ------------------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
                                      +S +  K   +  +  +  T    + +  T   
Sbjct: 360 SAPFVLGADSAQVNVPADTLESAQPLVASAVQVKSAGAGREGASFGTQTNAFGSMATPRD 419

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE-----ATHYQLGIACAQIHQNYIISQ 421
                     S            +     ++          +       A +   Y +  
Sbjct: 420 NSRGNYSAGESRQRTELPSKAAIASYGALLQTPSYSVKDQDYQPSLPMPAILDGQYWVMA 479

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           T D L ++   +       +++ +   +T +  Q LL P  +       A++ EHD  + 
Sbjct: 480 TADKLSLLPIKSVALATRCQEI-EAKLATGLIGQPLLMPVSVAADADWQAVLDEHDTLIR 538

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
           +LG++        + I+++P  + +  + +++ + +  +
Sbjct: 539 QLGLELT-IRYQQLIIKKVPPYIRESQLAKVIPEWLQSL 576


>gi|77359236|ref|YP_338811.1| methyl-directed mismatch repair protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587198|sp|Q3IDU0|MUTL_PSEHT RecName: Full=DNA mismatch repair protein mutL
 gi|76874147|emb|CAI85368.1| Enzyme in GATC methyl-directed mismatch repair, stimulates binding
           of Vsr and MutS to heteroduplex DNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 618

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 154/561 (27%), Positives = 259/561 (46%), Gaps = 50/561 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MSIEILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIERGGHKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD  NI + GFRGEAL SI +VS LTL S+       
Sbjct: 61  AGIAQDELTLALSRHATSKLKSLDDLENICSLGFRGEALASISSVSRLTLSSKTKHQEAA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V+PVA   GT +EV+DLFF  PAR  FL++E+ E + I ++I+R+A+
Sbjct: 121 WQAFAQGRDMAVQVKPVAHPDGTTIEVKDLFFNTPARRKFLRTEKTEFSHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T +  +    +   ++       R++QV G+ F    + +      + L G+ 
Sbjct: 181 SRFDVSITLTHNEKVVRQYRAKTDPSQAIARVAQVAGKAFAEQGLHIQSGEGGLQLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                        Y ++N R ++DK IL  IR A+ E       P  V+ ++IDPRQVDV
Sbjct: 241 LPVGSANTV---QYTYVNNRMMRDKLILHAIRQAFEEVSGAQELPGFVIYIDIDPRQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-KGISTSSVLSKKMISSFHQDNAPKTHLP 356
           NVHPAK  +RF    ++ +FI+Q+I++ +   +G  T+  L+    ++F Q +  ++   
Sbjct: 298 NVHPAKHEVRFHQGRLVHDFILQAIKQVVVPLQGEFTNEPLNNLADTAFSQTDTARSPTG 357

Query: 357 KYATSLTNTQEKLFLQEN------------------RLSTNDLLPSDDPTYSEDNDPVEE 398
            + +       K  LQ +                    +      ++    +     V E
Sbjct: 358 NFESGEVFDYPKSQLQPSHSVSSGGASLGSRSAGGSGGAYRATPSTNHHDINAFYQGVSE 417

Query: 399 SEATHYQLGIA---------------------CAQIHQNYIISQTTDGLVIVDQHAAHER 437
             A H+  G                          I++   +  +   L       A   
Sbjct: 418 QHAAHFDQGAHVSVGVNQSHAVEQAVALKTVAIISINEGVCVFSSEQQLYCSHFKYALVD 477

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
              E+++       +  + LL P  ++L + +C LI         LG +        + +
Sbjct: 478 DWHEQIK---EQGSLEGKALLLPVRVNLSKQDCELIAAQQSWFTLLGFEL-IIEKQFVMV 533

Query: 498 REIPAILSKKNIPQLLRDIID 518
           +++PA L   ++   +  +++
Sbjct: 534 KKLPACLYLLDVTSAVESLLE 554


>gi|315127883|ref|YP_004069886.1| methyl-directed mismatch repair protein [Pseudoalteromonas sp.
           SM9913]
 gi|315016397|gb|ADT69735.1| methyl-directed mismatch repair protein [Pseudoalteromonas sp.
           SM9913]
          Length = 608

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 151/551 (27%), Positives = 256/551 (46%), Gaps = 40/551 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MSIEILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIERGGHKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD  NI + GFRGEAL SI +VS LTL S+P      
Sbjct: 61  AGIAKDELTLALSRHATSKLKSLDDLENICSLGFRGEALASISSVSRLTLSSKPENQEAA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V+PVA   GT +EV+DLFF  PAR  FL++E+ E + I ++I+R+A+
Sbjct: 121 WQAFAQGRDMAVEVKPVAHPSGTTIEVKDLFFNTPARRKFLRTEKTEFSHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T +  +    +   ++       R++QV G+ F    + +      + L G+ 
Sbjct: 181 SRFDVSITLTHNEKVVRQYRAKTDPAQAITRVAQVAGKAFAEQGLHIQSGEAGLQLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                        Y ++N R ++DK IL  IR A+ E       P  V+ ++IDPRQVDV
Sbjct: 241 LPVGSANTT---QYTYVNNRMMRDKLILHAIRQAFEEVSGEQELPGFVIYIDIDPRQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI----NKKGISTSSVLSKKMISSFHQDNAPKT 353
           NVHPAK  +RF    ++ +FI+Q+I++ +     +   S ++      ++SF+Q++   +
Sbjct: 298 NVHPAKHEVRFHQGRLVHDFILQAIKQVVVPLQAEFVNSPAAHAHHSPVTSFNQEHTSSS 357

Query: 354 HLPKYATSL--------------------------TNTQEKLFLQENRLSTNDLLPSDDP 387
            L  Y  S                             +Q    +       N+       
Sbjct: 358 ELFDYPKSSLQPSHSPSTSSASYSGSRQGGGRQVRAESQNYHDVNAFYQGVNEQQAQHFD 417

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
           T S    P E   +      +    I +   +    + L       A       ++++  
Sbjct: 418 TASAFLQPNETQVSDTALRTVDIISIEKGVCVFNNENQLYCSHFKYALADDWHTQIKEH- 476

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
               +  + LL P  +++ + + AL+         LG +        + ++++P  L   
Sbjct: 477 --GSLEGKALLLPVRVNVSKQDTALLAAQQSWFTLLGFEL-LIEKQFVMVKKLPTSLYLL 533

Query: 508 NIPQLLRDIID 518
           ++   +  +++
Sbjct: 534 DVSAAIDALLE 544


>gi|322800065|gb|EFZ21171.1| hypothetical protein SINV_06397 [Solenopsis invicta]
          Length = 672

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 146/657 (22%), Positives = 278/657 (42%), Gaps = 80/657 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  ++++ I+ I +G+++   +IA+KEL+ENSLD+ ++ ++  +   GK+   ++DNG 
Sbjct: 13  KIEAINKETIHHICSGQVVLDLAIAVKELVENSLDSGATVIDVKLTDYGKTCISVSDNGS 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ ++      +H TSK+ +  D + ++TFGFRGEAL S+ A+S L++++R   +  G 
Sbjct: 73  GVSEQDFEGLGLKHHTSKLREFTDLTEVNTFGFRGEALSSLCALSELSIITRHATSEHGF 132

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++      I +   P A   GT V VR++F  +P R   F K+ + E      V+    +
Sbjct: 133 KLEFDRNGILTRKEPYAREKGTTVYVRNIFKNLPVRAKEFQKNLKKEYARAVQVLYSYCL 192

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------ 229
               +  T S +    +   +       +    I+ V G+  ++  V+L  +S       
Sbjct: 193 VSTNIKITCSNLLAGKSPNLIVTTRNVDDVLSNINSVFGKKSLDGIVKLELQSPDETVLQ 252

Query: 230 ----------EITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                     +   + Y        G +  ++ + ++NGR      I   + + Y     
Sbjct: 253 EYNLPSDATVDFDWECYVSTCDHAIGRSSPDRQFFYVNGRPCDLTKISKLVNSVYHRY-N 311

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------- 328
           + +YP V   +++D +  DVNV P K  I      +I   +  S+    +K         
Sbjct: 312 IKQYPFVFFNIKLDRQCADVNVTPDKRTIFVTQERLILATLKFSLITKWDKLQGNFTVKT 371

Query: 329 -----------------------KGISTSSVLSKKMISSFHQDNAPKTHLP---KYATSL 362
                                    +S S     K   +  Q N      P     A S+
Sbjct: 372 LTELNFGLKRTISPNHAHSPAKRLQLSPSVSHIVKENDTTIQTNIKSLKKPTDVNMAISI 431

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE--------ATHYQLGIACAQIH 414
              +EKL  ++N  +             +      E+E           ++      Q +
Sbjct: 432 VTIKEKLNEKQNIATALSSTIKRIKYRVQMEGNQSEAEKELQKELTKDSFEKMEIIGQFN 491

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  D L I+DQHA  E+  FEK+    N TK+ +Q L+ P++++       +++
Sbjct: 492 LGFIIARLEDDLFIIDQHATDEKFRFEKL---SNETKLKTQKLIVPKLLNFSALNETILI 548

Query: 475 EHDEDLHRLGIKA---ERFGPN-AIAIREIPAI----LSKKNIPQLLRDIIDEIIDSSTT 526
           ++ +     G      E+  P   + +  +P        +++I +L+  +I E  + +  
Sbjct: 549 DNLQTFENNGFTFNINEQAEPGKKVELIGMPVSGNWQFGQEDIEELIF-LIREAGNENKH 607

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                R+  +LA+ AC  ++  G  + + EM RL+ +M +  N   C HGRPT   L
Sbjct: 608 MYRPSRVRQMLASRACRSAVMIGTALNTSEMQRLVTQMTQMYNPWNCPHGRPTIRHL 664


>gi|225567943|ref|ZP_03776968.1| hypothetical protein CLOHYLEM_04016 [Clostridium hylemonae DSM
           15053]
 gi|225163231|gb|EEG75850.1| hypothetical protein CLOHYLEM_04016 [Clostridium hylemonae DSM
           15053]
          Length = 695

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 127/397 (31%), Positives = 205/397 (51%), Gaps = 6/397 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L +  I++IAAGE+IERP+  +KEL EN++DA ++ +   I  GG SF +I DNG 
Sbjct: 3   KIQVLDQVTIDKIAAGEVIERPASVVKELAENAIDAGATSITVEIKEGGISFIRIADNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P A  RH TSKI   +D  +I + GFRGEAL SI AVS + L+++   +  G 
Sbjct: 63  GIGREDVPSAFLRHSTSKIRSVEDLVHIGSLGFRGEALSSIAAVSQVELVTKTKADTFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I+G K  ++       GT   +R LF+  PAR  FLK+   E + + +++ R+A+++
Sbjct: 123 SYRIAGGKEEALEDTGAPDGTTFLIRQLFYNTPARRKFLKTPMTEASHVGELVTRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F     ++      S NG+  + I  V G +   N + +N +   + + G+ G 
Sbjct: 183 PEISFQFINNGQSKVH---TSGNGSLKDVIYHVYGREIAANLLAVNYERTGMKITGFLGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    FINGR V+   I   I  AY +     +YP VVL +EID   +DVNV
Sbjct: 240 PLISRGNRNFENYFINGRYVKSNMIAKAIEDAYKDFTMQHKYPFVVLHMEIDGEHIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF N   + N + +++ + ++ + +     L +           P    P+ +
Sbjct: 300 HPTKMELRFNNQQDVYNSVYEAVDRGLHAEEMIPHVELPEPP-GGETPSVRPAEQKPEPS 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
                  ++  ++E       +  +   T      PV
Sbjct: 359 PEKEYAAQRPPVKEPIQQAQPMRETPRQTQPVKEQPV 395



 Score =  202 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
              +  F+ +  ++  +    ++S+ +  K  ++  +       + + A       +   
Sbjct: 407 QRDVNYFLEEMKKRVRSYHEQNSSAEVQDK--NAIFKPGIQADRIREAAAYAKTDAKADD 464

Query: 371 LQENRLS---TNDLLPSDDPTYSEDNDPVEESEATHYQLGIA--CAQIHQNYIISQTTDG 425
           +Q N      T+      +   ++  D  EE      +        Q+   Y I +  D 
Sbjct: 465 VQRNSAPLKETDSAGKQMESGTAKQMDMFEEKFLDRERKAEYKLVGQVFDTYWIVEFHDS 524

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I+DQHAAHER+++E+  ++  + + TSQ +  P I+DL   E  L+  + E   ++G 
Sbjct: 525 LYIIDQHAAHERVLYERTLKNMKTREFTSQYISPPIILDLTMQEAELLTMYMEQFTKVGF 584

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
           + E FG ++ A+R +P  L      +LL ++ID + D  +     D I+  +A+M+C  +
Sbjct: 585 EIEEFGQDSYAVRAVPDNLFSIAKKELLMEMIDSLSDEISRTLSPDLIDEKVASMSCKAA 644

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   K+ + E++ L+ E+    N   C HGRPT I +   ++EK F R
Sbjct: 645 VKGNMKLSAAEVDTLINELLMLENPYHCPHGRPTIIAMTKRELEKKFKR 693


>gi|89075987|ref|ZP_01162359.1| DNA mismatch repair protein [Photobacterium sp. SKA34]
 gi|89048336|gb|EAR53915.1| DNA mismatch repair protein [Photobacterium sp. SKA34]
          Length = 722

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 129/447 (28%), Positives = 211/447 (47%), Gaps = 5/447 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGSRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  KGIPKDELALALSRHATSKITTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTQSQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT +EV DLFF  PAR  FL++E+ E N I ++I+R+A+
Sbjct: 121 WSAYAEGRDMDVQLKPAAHPVGTTLEVLDLFFNTPARRKFLRTEKTEFNHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+ T         +     +      R++   G  F+ +A+ +     ++ L G+ 
Sbjct: 181 SRFDVAITLRHNGKIIRQYRTAQSPIQKERRLATACGSGFLQHALMVELAHGDLKLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                 R   +  Y ++NGR ++DK I   IR AY  ++   +Y   VL +++DP QVDV
Sbjct: 241 CSSQGARAQNDIQYCYVNGRMMKDKLINHAIRQAYESSLRSDQYAAYVLYIDVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH--L 355
           NVHPAK  +RF    ++ +FI Q++Q A+ +  +       +  I +            +
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALQSALQQGALEEEQHQYQSPIRASAHSFEVDEDGVV 360

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
            +   S+T    +             L   + + S  +        +        A+   
Sbjct: 361 IEPINSVTQRVAQAIDATPEYPHKSPLSEWNKSASTPSYSAGSPFESDMHGLAVSAEYAV 420

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEK 442
           +     +         +  +    ++ 
Sbjct: 421 SEATEHSISTSYSASPNTNNREHQYDH 447



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 91/252 (36%), Gaps = 9/252 (3%)

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL--QENRLS 377
              Q +      + +S +S     S   +      +  Y   L        +  +     
Sbjct: 450 CERQDSDQTVNTTRTSDVSSGASRSPKPEGPTAAEIKAYQKLLQTEAPTKHVLAEHPIEH 509

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
             +         S               LG A   + + Y++ Q    + +++   A E 
Sbjct: 510 VAEPRREWQAMPSNAVVKQHAIAGKAMGLGKALCLVAERYLLMQQDTDIALLNLDHA-EL 568

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L +    +   +  +  Q LL P  + +     A   +H   L +LG++ +  G N I I
Sbjct: 569 LRYVGQLRLAQTEGLKPQPLLIPLSVPVESDLIACAEQHAMLLKQLGVQLKPKGRNGIII 628

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA--CYGSIRSGRKMQSI 555
             +   L ++N+ QL+ +++  ++ +      Q   + +L  +A  C G++ +   +   
Sbjct: 629 MSVCMPLRQQNLQQLIPNLLTYLLTACDDPEAQGW-DKLLYWLAEQCVGTV-ASYSLS-- 684

Query: 556 EMNRLLREMEKN 567
           +  +L+ E+E+ 
Sbjct: 685 QAIQLVSELEQL 696


>gi|52842903|ref|YP_096702.1| DNA mismatch repair protein MutL [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630014|gb|AAU28755.1| DNA mismatch repair protein MutL [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 576

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 134/514 (26%), Positives = 251/514 (48%), Gaps = 11/514 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS  I NQIAAGE+IERP+  +KEL+ENSLDA +S +   +  GG     ++DNG 
Sbjct: 4   RIHQLSPAIANQIAAGEVIERPASVVKELLENSLDAGASVIGVDVNYGGLLQITVSDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+  H TSKI   DD  +I + GFRGEAL SI +V+ +T++S+P + +   
Sbjct: 64  GIVGDDLPLAIAAHATSKIRTLDDLYSIDSMGFRGEALASIASVAKVTIISKPEEQDNAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +  ++ P A N GT ++V DLF+  P R  FLK+E++E   I  V++R A++ 
Sbjct: 124 MLRVEG-ENRTLSPCARNIGTTIDVSDLFYNAPVRKRFLKNEKLEFQAIEMVVKRFALSA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++ T    K   + +    +      R+ +++G  F+  A+ L+ + + + L G+   
Sbjct: 183 PQIALTLKHNKKLIFSLPPALSEQAKAIRMGRILGNTFMREAIFLDVEHSGMRLYGWISN 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   ++ ++++N R V+DK +   ++ AY   +  GR+P+ +L   +   +VDVNV
Sbjct: 243 HRLQRSQNDRQWIYVNQRMVKDKLLQHAVKQAYDGLLHAGRFPICLLYFTLPASEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+ P ++ +F    + KA+      + ++      SS ++     +      
Sbjct: 303 HPTKHEVRFQQPRLVHDFFTSQLTKALQSTLDHSETMEYAYAASSCNEQQNTVSEPSHIC 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                  ++   +  R  +     +   +        + S   H +       +++ +I+
Sbjct: 363 N------DRESYEGARALSPSWSDNSLSSSITCKGYKKTSSVYHPETEFQWVILNERFIL 416

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                   +VD     +  I +++ Q      + S+ LL      L       +     +
Sbjct: 417 VLIKQQPYLVDIVTLFQEWIEKQLMQKAL--PLESRPLLISIRYPLPNQWIHKLDHLKHE 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           L R+GI+ E    + + IR IP      ++ +  
Sbjct: 475 LTRVGIQIEYPNADDLLIRSIPLNAPYLDVRRFF 508


>gi|218249649|ref|YP_002374736.1| DNA mismatch repair protein MutL [Borrelia burgdorferi ZS7]
 gi|218164837|gb|ACK74898.1| DNA mismatch repair protein MutL [Borrelia burgdorferi ZS7]
          Length = 600

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 146/613 (23%), Positives = 264/613 (43%), Gaps = 44/613 (7%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           + +IAAGE I+RP   ++EL++NS+D+ ++++E  +  GG     I DNG G++ E++ +
Sbjct: 2   VQKIAAGESIDRPCSILRELLDNSIDSGATKIEVFLVEGGIQKILIIDNGSGISKEDLKI 61

Query: 71  AVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
               H TSKIS  +D   I T GFRGEAL SI   S++++ S    N +  QI +     
Sbjct: 62  CYLPHTTSKISSEEDLRKIETLGFRGEALSSIAICSNISITSSTTSNES-YQIEVENGIE 120

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
              +      GTIV+V  +F   PAR  FLK E +ET +   V+    I +P+++F  + 
Sbjct: 121 KCFKKQPAINGTIVDVTKIFHNFPARKRFLKQEPIETKMCLKVLEEKIITHPEINFEINL 180

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-NEKSNEITLQGYTGIPTFNRGNA 247
            +     +       +  +R+  V G    NN   +  ++ + I ++ +     F++ + 
Sbjct: 181 NQK----LRKIYFKESLIDRVQNVYGNVIENNKFRVLKKEHDNIKIEIFLAPDNFSKKSK 236

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
                F+N R +  K +L  I   ++  +  G +P+  L LEI+P  +D NVHP K  +R
Sbjct: 237 RHIKTFVNRRPIDQKDLLEAITNGHSRILSPGNFPICYLFLEINPEYIDFNVHPQKKEVR 296

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ--DNAPKTHLPKYATSLTNT 365
           F N   +   I  +I    +K   +   ++ K+ ++      +   +        +    
Sbjct: 297 FYNLPFLFKLISDNINNFFDKNINNYQDIIIKRQLTEDDHLIEMTNQPENFNKINTYDIP 356

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG------------------ 407
           Q      E+    N      +      N  ++        +G                  
Sbjct: 357 QNNNLETEDVNEPNKNTTQSNIDLRRYNSIIQNRPTLRENIGNIFSDNFLEFEEPPNKNE 416

Query: 408 ------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
                     QI   ++I +  + +  +DQHA HE++I+EK+R   NS K   + L+  E
Sbjct: 417 KEEIKFNYIGQIFSEFLIVEKINEIYFIDQHAVHEKIIYEKLR---NSKKNVQKLLVPIE 473

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
              + +    +I    E+  ++ I   + GP    +  IP I S+        + +    
Sbjct: 474 FTVVDKNIEEIIDSEIEEYKQMDIIISKIGPKKYQLESIPNICSQYE------NTLINFF 527

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
            S  + T+     ++ AT+AC  +++    + +     L+ E  K      C HGR  + 
Sbjct: 528 QSRRSRTINSLESDLYATIACRKAVKRNDMLSAEFSKFLINEFFKLE-IKHCPHGRKIYY 586

Query: 582 KLKLSDIEKLFGR 594
           K+   ++EK   R
Sbjct: 587 KISKFELEKKVDR 599


>gi|54298688|ref|YP_125057.1| DNA mismatch repair protein MutL [Legionella pneumophila str.
           Paris]
 gi|53752473|emb|CAH13905.1| DNA mismatch repair protein MutL [Legionella pneumophila str.
           Paris]
          Length = 576

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 139/502 (27%), Positives = 248/502 (49%), Gaps = 11/502 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS  I NQIAAGE+IERP+  +KEL+ENSLDA +S +   +  GG     ++DNG 
Sbjct: 4   RIHQLSPAIANQIAAGEVIERPASVVKELLENSLDAGASVIGVDVNYGGLLQITVSDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ +++P+AV  H TSKI   DD  +I + GFRGEAL SI +V+ +T++S+P + +   
Sbjct: 64  GISGDDLPLAVAAHATSKIRTLDDLYSIDSMGFRGEALASIASVAKVTIISKPEEQDNAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +  ++ P A N GT ++V DLF+  P R  FLK+E++E   I  V++R A++ 
Sbjct: 124 MLRVEG-ENRTLSPCARNIGTTIDVSDLFYNAPVRKRFLKNEKLEFQAIEMVVKRFALSA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++ T    K   + +    +      R+ +++G  F+  A+ L+ + + ++L G+   
Sbjct: 183 PRIALTLKHNKKLIFSLPPALSEQAKAIRMGRILGNTFMREAIFLDVEHSGMSLYGWISN 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R   ++ ++++N R V+DK +   ++ AY   +  GR+P+ +L   +   +VDVNV
Sbjct: 243 HRLQRSQNDRQWIYVNQRMVKDKLLQHAVKQAYDGLLHAGRFPICLLYFTLPASEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+ P ++ +F    + KA+      + +       SS + +       P + 
Sbjct: 303 HPTKHEVRFQQPRLVHDFFTSQLTKALQSTLDHSDTREYAYAASSCN-EQQNTVSEPSHI 361

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +   + E         S N L  S      +    V   E     +      +++ +I+
Sbjct: 362 CNDRESHEGARALSPSWSANLLSSSITNKGYKKTSSVYHPETESQWV-----ILNERFIL 416

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                   + D     +  I  ++ Q      + S+ LL      L         +   +
Sbjct: 417 VFIKQQPYLADIVTLFQEWIENQLMQKAL--PLESRPLLISIRYPLPNQWIHKQEQLKHE 474

Query: 480 LHRLGIKAERFGPNAIAIREIP 501
           L R+GI+ E    + + IR IP
Sbjct: 475 LARVGIQIEYPNADDLLIRSIP 496


>gi|219871506|ref|YP_002475881.1| DNA mismatch repair protein [Haemophilus parasuis SH0165]
 gi|219691710|gb|ACL32933.1| methyl-directed mismatch repair protein [Haemophilus parasuis
           SH0165]
          Length = 589

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 143/531 (26%), Positives = 257/531 (48%), Gaps = 32/531 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG G+  +++ +A+ RH TSKI
Sbjct: 2   ERPASVVKELVENSLDAGATQIQIDIEKGGSQLIRIRDNGCGIGKQDLALALARHATSKI 61

Query: 81  S--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMN 137
           +  +D  +I + GFRGEAL SI +VS LTL SRP       Q    G ++   ++P +  
Sbjct: 62  ATLEDLESILSLGFRGEALASISSVSRLTLTSRPEYQAEAWQAYAQGREMEVEIKPASHP 121

Query: 138 PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMN 197
            GT +EV +LFF  PAR  FL++++ E   I +V+RR+A+A P V+FT +  +       
Sbjct: 122 VGTTIEVANLFFNTPARRKFLRTDKTEFAHIDEVVRRIALAKPNVTFTLTHNEKKVRYYK 181

Query: 198 FQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
             +T       +R++ + G++FI  +V ++ + +++ + G+ G P+  R   +  Y ++N
Sbjct: 182 AVATQQLEQQQKRVATICGDEFIQQSVHIDWQHDDLHIYGWVGSPSLARVQNDLCYSYVN 241

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
           GR ++DK I   IR AY E +P   YP  VL L++DP  VDVNVHPAK  +RF    ++ 
Sbjct: 242 GRMMRDKTINHAIRQAYGERLPKDHYPAFVLFLDLDPSHVDVNVHPAKHEVRFHQSRLVH 301

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSF-----------------HQDNAPKTHLPKY 358
           +FI Q +  A+  +     +    + + ++                 +++    +     
Sbjct: 302 DFIYQGVLNALEDQHHLPLTTNVSEALPNYIADTNRVASGQNIFAHSYREPRSTSSTHAE 361

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE-------SEATHYQLGIACA 411
             + +NT+     +  +    +LL +      + ++PV++       +            
Sbjct: 362 RPNYSNTRSSGVSKNEQKWYGELLSTSPMQDYKRSEPVQDLPKTAKITPLVEPIAEPVTP 421

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
                 ++ Q    +   +           +++      K  +Q LL P  + L E + A
Sbjct: 422 YAQALAVVKQKALLIKQGETFYLLSLEKLAQLKLQAELAKRENQALLIPLSLTLDEQQTA 481

Query: 472 LIMEHDEDLHRLGIKAER---FGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
              +    L  LG   +     G   + I+++P  L ++N+ QLL  + ++
Sbjct: 482 SWQQSQTALADLGFDIQTKQWQGQTRLTIQKVPTCLREQNLQQLLFSLFNQ 532


>gi|119468156|ref|ZP_01611282.1| Enzyme in GATC methyl-directed mismatch repair, stimulates binding
           of Vsr and MutS to heteroduplex DNA [Alteromonadales
           bacterium TW-7]
 gi|119448149|gb|EAW29413.1| Enzyme in GATC methyl-directed mismatch repair, stimulates binding
           of Vsr and MutS to heteroduplex DNA [Alteromonadales
           bacterium TW-7]
          Length = 610

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 151/553 (27%), Positives = 258/553 (46%), Gaps = 42/553 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MNIEILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIQIEIERGGHKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+   DD  NI + GFRGEAL SI +VS LTL S+P   +  
Sbjct: 61  SGIGKEELTLALSRHATSKLKSLDDLENICSLGFRGEALASISSVSRLTLSSKPKTQDAA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V+PVA   GT +EV+DLFF  PAR  FL++E+ E   I ++I+R+A+
Sbjct: 121 WQAFAEGRDMAVQVKPVAHPDGTTIEVKDLFFNTPARRKFLRTEKTEFTHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T +  +    +   ++   +   R++QV G+ F    + +      + L G+ 
Sbjct: 181 SRFDVSITLTHNEKVVRQYRAKTDPAHAITRVAQVAGKAFAEQGLHIQSGEAGLQLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P  +       Y ++N R ++DK IL  IR A+ E   +   P  V+ ++IDPRQVDV
Sbjct: 241 -LPVGSVNTT--QYTYVNNRMMRDKLILHAIRQAFEEVSGVQELPGFVIYIDIDPRQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKA---INKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHPAK  +RF    ++ +FI+Q+I++    +  +  + +   +   + +F     P T 
Sbjct: 298 NVHPAKHEVRFHQGRLVHDFILQAIKQVVVPLQGEFNNEAVTTADDHLPAFTHAMHPSTS 357

Query: 355 LPKYATSLTNTQEKL----------------------FLQENRLSTNDLLPSDDPTYSED 392
             + +      + +L                          N    N         ++  
Sbjct: 358 KNETSGGYDYPKSQLQPNYSGSSSSTGAKSSGGEYRASSSANHQDVNAFYQGVSEQHAAH 417

Query: 393 NDPVEESEATHY-------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
            D V ++               ++   +H    +      L       A      E+++ 
Sbjct: 418 FDVVAQTTQQDSSVPEQSAVSMVSIISLHDGNCVFSAQQQLFCSHFKYAIVDDWHEQIK- 476

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                 +  + LL P  ++L + +C LI         LG +        + ++++P+ L 
Sbjct: 477 --EQGSLEGKALLLPVRVNLSKEDCLLIEGQQSWFTLLGFEL-VIEKQFVMVKKLPSCLY 533

Query: 506 KKNIPQLLRDIID 518
             ++   + +++ 
Sbjct: 534 LLDVSNAVNELLS 546


>gi|206895681|ref|YP_002247407.1| DNA mismatch repair protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738298|gb|ACI17376.1| DNA mismatch repair protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 542

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 162/596 (27%), Positives = 275/596 (46%), Gaps = 59/596 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L  ++ ++IAAGE+IERP   +KEL+EN+LDA ++ +   +  GG     ++DNG G
Sbjct: 2   IRELPLEVRSKIAAGEVIERPVSVVKELVENALDAGATDIRVSVINGGLDEIMVSDNGCG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  EE+P+AV+R  TSKI   +D  +I T GFRGEAL SI  V+ LT+ S      T  Q
Sbjct: 62  MPFEELPLAVKRFTTSKIGSVEDLDSIATLGFRGEALASIADVADLTIFSC--DGETSGQ 119

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G ++   +PVA   GT V VRDLFF +PAR  FL+S   E + I   ++ M + YP
Sbjct: 120 LRIRGGELLLCKPVASPKGTRVIVRDLFFNLPARKKFLRSASTEFSHIQKFLQSMVLIYP 179

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V +TF++ K   + +       +  ER   + G+     A   ++   +I         
Sbjct: 180 NVQWTFTSEKGVIWHV---PPQLSAEERFYSLFGQKAQFRAFTASQGELDI--------- 227

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             N     +  + +NGR ++       +R    +       PV+VL L ++P QVDVNVH
Sbjct: 228 YLNPNIVGELILSVNGRLIKGSAYFQVLR-ILKDMWGGANLPVMVLRLNVEPDQVDVNVH 286

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  IRF++   +R  + + I                +        D      +P Y +
Sbjct: 287 PQKLDIRFKSQVWLRQALQELI-------------TQVRGEAGGLGIDFKTNGGMPHYQS 333

Query: 361 SL--TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
               T   +   +    +  N +L   +   ++ +     S+    +       ++  YI
Sbjct: 334 EAWTTTPNDAPTVVSETMRENYMLFQKEVLQNQKDVGSAVSKGFEIKD-----YLYDTYI 388

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +      + DQHA +E++ + ++            + L      L    C++  E  +
Sbjct: 389 LIKRDGVYELWDQHAVNEKINYWRL------------SSLYGVQFLLEPLFCSVDEETAQ 436

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L  +G + ++       I+ +P++L       ++ D ++ I  +         IE   A
Sbjct: 437 ALTEMGFELQQVRGG-YLIKAVPSLLLLSRSLDVIIDDLESIKGN---------IEKTRA 486

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC  ++++G+K+  +E+  L+ E  K  + S   HGRP  +KL  + IE+LF R
Sbjct: 487 DLACKSAVKAGQKLSPMEIEALVVEGLKVLDVSYDPHGRPAVVKLDEALIERLFNR 542


>gi|239993397|ref|ZP_04713921.1| DNA mismatch repair protein [Alteromonas macleodii ATCC 27126]
          Length = 619

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/421 (32%), Positives = 219/421 (52%), Gaps = 6/421 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++E  I  GG    +I DNG
Sbjct: 1   MPIQLLSPQLANQIAAGEVVERPASVVKELLENSLDAGATKIEVDIEKGGHKRIRIKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIVKSELQLALSRHATSKITTLDDLEQILSLGFRGEALASISSVSRLTLTSRTESQGEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +++P A   GT ++V DLF+  PAR  FL++E+ E   I +VI+R+A+
Sbjct: 121 WQAYCEGREMAVNIQPAAHPVGTTIDVADLFYNTPARRKFLRTEKTEFQHIEEVIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +YPKVSF          +       G+   RI  V+G+ F+ NAV ++ +   + +  + 
Sbjct: 181 SYPKVSFVLKHNDKVAKRFIADKA-GSLATRIGAVVGQKFVQNAVHISTEYEGLHIDAWL 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G     R + +  + F+NGR ++DK I+  IR AY     +   P  V+ L ++P+ VDV
Sbjct: 240 GNEAMLRSSNDCQFSFVNGRGMRDKLIMHAIRQAYESVWGVVEQPSFVVYLTVNPKDVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF+   ++ +FI +++  A++                S     + +     
Sbjct: 300 NVHPAKHEVRFQQGRLVHDFICKTVSDALHAMTDEQPLSGMDASRPSGSDFMSSQVEHDY 359

Query: 358 YAT--SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                + T+   + F + +R ST  +      +Y +       + +     G +    H+
Sbjct: 360 IRPLQNQTSDNAQAFNESSRYSTGGISQGAPQSYGQFTGSPRNTSSGSASGGRSGGAAHK 419

Query: 416 N 416
            
Sbjct: 420 Q 420


>gi|148358566|ref|YP_001249773.1| DNA mismatch repair protein MutL [Legionella pneumophila str.
           Corby]
 gi|296108344|ref|YP_003620045.1| DNA mismatch repair protein MutL [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280339|gb|ABQ54427.1| DNA mismatch repair protein MutL [Legionella pneumophila str.
           Corby]
 gi|295650246|gb|ADG26093.1| DNA mismatch repair protein MutL [Legionella pneumophila 2300/99
           Alcoy]
          Length = 576

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/520 (26%), Positives = 253/520 (48%), Gaps = 13/520 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS  I NQIAAGE+IERP+  +KEL+ENSLDA +S +   +  GG     ++DNG 
Sbjct: 4   RIHQLSPAIANQIAAGEVIERPASVVKELLENSLDAGASVIGVDVNYGGLLQITVSDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+AV  H TSKI   DD  +I + GFRGEAL SI +V+ +T++S+P + +   
Sbjct: 64  GIVGDDLPLAVAAHATSKIRTLDDLYSIDSMGFRGEALASIASVAKVTIISKPEEQDNAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G +  ++ P A N GT ++V DLF+  P R  FLK+E++E   I  V++R A++ 
Sbjct: 124 MLRVEG-ENRTLSPCARNIGTTIDVSDLFYNAPVRKRFLKNEKLEFQAIEMVVKRFALSA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++ T    K   + +    +      R+ +++G  F+  A+ L+ + + + L G+   
Sbjct: 183 PRIALTLKHNKKLIFSLPPALSEQAKAIRMGRILGNTFMREAIFLDVEHSGMRLYGWISN 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            +  R   ++ ++++N R V+DK +   ++ AY   +  GR+P+ +L   +   +VDVNV
Sbjct: 243 QSLQRSQNDRQWIYVNQRMVKDKLLQHAVKQAYDGLLHAGRFPICLLYFSLPASEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY- 358
           HP K  +RF+ P ++ +F    + KA+      +         SS ++     +      
Sbjct: 303 HPTKHEVRFQQPRLVHDFFTSQLTKALQSTLDHSDMREYAYAASSCNEQKNTVSEPSHIC 362

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
               ++  EK        ++     +        +    E+E+           +++ +I
Sbjct: 363 NDRESHEGEKALFPSWSGNSLSSSITSKRYKKNSSVYHPETES-------QWVILNERFI 415

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +        + D  A  +  I +++ Q      + S+ LL      L         +   
Sbjct: 416 LVFIKQQPYLADIVALFQEWIEKQLMQKAL--PLESRPLLISIRYSLPNQWIHKPEQLKH 473

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           +L R+GI+ E    + + IR IP      ++ +    + +
Sbjct: 474 ELARVGIQIEYSNADDLLIRSIPLNAPYLDVRRFFNILCE 513


>gi|167461065|ref|ZP_02326154.1| DNA mismatch repair protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381943|ref|ZP_08055893.1| DNA mismatch repair-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154083|gb|EFX46411.1| DNA mismatch repair-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 682

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 210/401 (52%), Gaps = 5/401 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E+I NQIAAGE++ERP+  +KEL+ENS+DA S+RV+  I  GG    ++ DNG 
Sbjct: 3   RIQLLDEQISNQIAAGEVVERPASVVKELVENSIDASSTRVDVSIEEGGLQSIRVRDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E+  +A  RH TSKI+   D  +I T GFRGEALPSI AVS +T  +    N  G 
Sbjct: 63  GIEAEDCELAFFRHATSKIARGKDLFSIRTLGFRGEALPSIAAVSKVTCTTATDNNGLGR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI I G  I SV+  A + GT + ++DLF+  PARL ++K+ Q E   I+D + R+A+A+
Sbjct: 123 QIVIEGGNICSVQETAASKGTDIIIKDLFYNTPARLKYMKTIQTELGHISDYMYRLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P  SFT     +    +     NG+  + I+ + G +     + L  +S + T++GY   
Sbjct: 183 PDRSFTLRHNGN---TLLQTLGNGDLLQVIAAIYGTNLAKKMISLKGESLDYTVRGYISK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N +   +F+NGR V+   +   I + Y   +P+ R+P+VVL + +DP  VDVNV
Sbjct: 240 PELTRANRSGISIFVNGRYVRSFPLNHAILSGYHTLLPINRFPLVVLEVGMDPGLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RF     +  ++ + I++ +  + +   +    K+     Q+        +  
Sbjct: 300 HPAKLEVRFSKEQDLTRWLEELIKETLGMQVLIPKADKPAKIREQVVQEELHLARAKEET 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
                 Q K    +   S          +     + + E  
Sbjct: 360 APAFQGQTKFKEDKPSQSAPVDKEIFSTSVRYQAEDMHEKS 400



 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 89/191 (46%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           +       Q+H  Y+++Q  +GL ++DQHAAHER+ +E     F   +  SQ LL P  +
Sbjct: 490 FPELTPVGQVHGTYLVAQNEEGLFLIDQHAAHERINYEYYYHKFGQPEEASQELLMPISL 549

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +    E A + +    L ++G+  E FG N   +R  P      +  +++ ++ + I+  
Sbjct: 550 EFTPSEAAALKDRLHLLEQVGVHIEPFGGNTFLVRAYPHWFPSGDEKEIIDEMCEWILSE 609

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                L    E      +C  SI++ + +  +EM  LL  +    N   C HGRP  +  
Sbjct: 610 KQGVDLAKLREKSSTLCSCKASIKANQNLSRLEMEVLLDRLSGCKNPYTCPHGRPIVVSF 669

Query: 584 KLSDIEKLFGR 594
              ++EK+F R
Sbjct: 670 STYELEKMFKR 680


>gi|114773231|ref|ZP_01450466.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255]
 gi|114546350|gb|EAU49259.1| DNA mismatch repair protein [alpha proteobacterium HTCC2255]
          Length = 600

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 150/540 (27%), Positives = 249/540 (46%), Gaps = 24/540 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENS+DA +++++ +I  GG     I DNG
Sbjct: 1   MSIQILSAQLANQIAAGEVVERPASIVKELVENSIDAGATKIDILIEQGGHKRITIVDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI   DD +NI + GFRGEAL SI +VS LTL S+P   +  
Sbjct: 61  CGIVKDELALALSRHATSKIHTIDDLTNIASLGFRGEALASISSVSRLTLTSKPASQSEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q+   G  +   + P A   G+ V+V DLF+  PAR  FLK+ + E   I ++++R+A+
Sbjct: 121 WQVHCEGRDMDVIINPAAHPDGSTVDVVDLFYNTPARRKFLKTHKTEFTHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P V    +                N  +RI  V G+ F+ + V +  +     ++ + 
Sbjct: 181 AAPHVGIKLTHNGKVIRHTPA----QNIEKRIDAVCGKGFVTDCVCVEREYQGTKVRAWL 236

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +R   +  Y F+NGR ++DK I   I+ AY   I    +P  V+ +E+   +VDV
Sbjct: 237 TKPMVHRNQNDVQYTFVNGRMMRDKLINHAIKQAYEGLIDSQFFPGYVVFIEVPLGEVDV 296

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI--------NKKGISTSSVLSKKMISSFHQDN 349
           NVHPAK  +RF N  I+ +F+ QS+ +A+                  +    I    Q  
Sbjct: 297 NVHPAKHEVRFVNSRIVHDFLYQSMSEALHNGFSDNTASTQDYAELTVEHDYIVPLEQQQ 356

Query: 350 APKTHLPKYATSLTNTQEK---LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
              +   +  + ++  +     L  +E   + ++       T       V E       L
Sbjct: 357 NTYSSGAQSNSGVSYPRANASGLSAREQATAASNYGTMHTGTMGRVGGNVAEQVKREQSL 416

Query: 407 GIACAQIHQNYIISQTTDGLVIV-DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            +   Q+       +  D L+            +  +   D      T Q LL P  +++
Sbjct: 417 ALPAGQMLILSTPLEGCDLLIQAKQLQVCSSIPVIARYLHDQMIQAETQQPLLLPVSVNV 476

Query: 466 LEGECALIMEHDEDLHRLGIKAE--RFGPNA--IAIREIPAILSKKNIPQLLRDIIDEII 521
                AL+   +    R   + E  + G +A    ++++P+ L      +L   I+  I 
Sbjct: 477 T-LPEALLTSLEASFERAQWEIECIQAGQHAQKWILKKVPSTLRSLPWSRLFGQILANIK 535


>gi|90581379|ref|ZP_01237175.1| DNA mismatch repair protein [Vibrio angustum S14]
 gi|90437489|gb|EAS62684.1| DNA mismatch repair protein [Vibrio angustum S14]
          Length = 723

 Score =  360 bits (923), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 131/409 (32%), Positives = 202/409 (49%), Gaps = 3/409 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIEKGGSRLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  KGIPKDELALALSRHATSKITTLDDLEAIVSLGFRGEALASISSVSRLTLTSRTQAQEEA 120

Query: 119 AQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                 G  +    +P A   GT +EV DLFF  PAR  FL++E+ E N I ++I+R+A+
Sbjct: 121 WSAYAEGRDMDVQLKPAAHPVGTTLEVLDLFFNTPARRKFLRTEKTEFNHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+ T         +     T      R++   G  F+ +A+ +     ++ L G+ 
Sbjct: 181 SRFDVAITLRHNGKIIRQYRTAQTPIQKERRLATACGSGFLQHALVVELAHGDLKLSGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                 R   +  Y ++NGR ++DK I   IR AY  ++   +Y   VL +++DP QVDV
Sbjct: 241 CSSQGARAQNDIQYCYVNGRMMKDKLINHAIRQAYESSLRSDQYAAYVLYIDVDPHQVDV 300

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q++Q A+ +  +       +  I +             
Sbjct: 301 NVHPAKHEVRFHQARLVHDFIYQALQSALQQGALEEEQHQYQSPIRASAHSIEVDEDGVV 360

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
              + + TQ      +         PS +   SE              +
Sbjct: 361 IEPTNSVTQRVAQAIDATPEYPHKSPSSEWKKSESTPSHSARAPIDSDM 409



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 90/252 (35%), Gaps = 9/252 (3%)

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT--SLTNTQEKLFLQENRLS 377
              Q +      + +S  S     S   +      +  Y       +  E +  ++    
Sbjct: 451 CERQGSDQTINTTRTSDASSGASRSPKPEGPTAAEIKAYQKLLQTESPTEHVLAEQPIER 510

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
             +         S               LG A   + + Y++ Q    + +++   A E 
Sbjct: 511 IAEPRREWQAMPSTAVVKQHAIAGKAMGLGKALCLVAERYLLMQQETDIALLNLDHA-EL 569

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L +    +   +  +  Q LL P  + +     A   +H   L +LG++ +  G N I I
Sbjct: 570 LRYVGQLRLAQTEGLKPQPLLIPLSVPVESDLIACAEQHAMLLKQLGVQLKAKGRNGIII 629

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA--CYGSIRSGRKMQSI 555
             +   L ++N+ QL+ +++  ++ +      Q   + +L  +A  C G++         
Sbjct: 630 MSVCMPLRQQNLQQLIPNLLTYLLSACDDPEAQGW-DKLLYWLAEQCVGTV---TSYSLS 685

Query: 556 EMNRLLREMEKN 567
           +  +L+ E+E+ 
Sbjct: 686 QAIQLVSELEQL 697


>gi|297623074|ref|YP_003704508.1| DNA mismatch repair protein MutL [Truepera radiovictrix DSM 17093]
 gi|297164254|gb|ADI13965.1| DNA mismatch repair protein MutL [Truepera radiovictrix DSM 17093]
          Length = 558

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 159/599 (26%), Positives = 265/599 (44%), Gaps = 72/599 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L  +++ +IAAGE++  P+  +KEL+EN+LDA ++R+E  + GGG     + DNG 
Sbjct: 3   PIRRLPPEVVREIAAGEVVTAPADVLKELLENALDAGATRLEVALDGGGTERVAVRDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS-DD----FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G+ + E+P AV+ H TSK+S +D       + T GFRGE L +I   + L L SRP    
Sbjct: 63  GIPAAELPRAVEAHSTSKLSGEDAGAALRALCTLGFRGEGLYAIRHAARLCLTSRPAAQL 122

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            GA +   G++++         GT+  V DLF  +PAR   L S   E+     ++ R  
Sbjct: 123 GGASLEAFGDEVALRTH-PAPQGTLAVVTDLFARLPARRAALGSASAESRRALALLSRYL 181

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +  +       R++       G F E +  + G    N  + +  +     L G 
Sbjct: 182 LHHPHLHVSLEQDGETRWRY----AGGGFREAVKFLWGAVTANRLLGVAAEGEGYALAGL 237

Query: 237 TGIPTFNRGNANQFYVFINGRTV-QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
              P  +R   ++  + +NGR V  D+ +L  +  AY E +  G +PV VL L + P QV
Sbjct: 238 LSRPELSRPRRDRLLLAVNGRPVEWDEELLKAVTHAYRELLRAGHFPVGVLNLTVPPEQV 297

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
            VN  P KS +RF  P  +  F+ ++++  +    ++ S    +   + F    AP+   
Sbjct: 298 LVNTAPDKSRVRFLAPEALAAFLREAVRATLGANPLAPSLPELQAPPALF---AAPRHRF 354

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
           P                                                          +
Sbjct: 355 PA-------------------------------------------------LRYLGVYRE 365

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            Y++++    L +VDQHAAHER++FE++ + +         L  PE++ L   E A    
Sbjct: 366 LYLLAEGEGQLWVVDQHAAHERVLFEELERRYRQEPP--VELPAPELLPLSPEEEATYAA 423

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E L   G++ E FG     +R +PA L     P+LL  ++   +         +    
Sbjct: 424 RREALRAAGLELEPFGGGRYRVRRVPAFLLGH--PELLPGVVSGALGRRGAD---EAWRA 478

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +LA +AC  +I++GR ++      LL  + +      C HGRPT + L   ++ + FGR
Sbjct: 479 VLARLACLPAIKAGRTLKDP--QALLDALARCETPWACPHGRPTALVLSELELARRFGR 535


>gi|21227784|ref|NP_633706.1| DNA mismatch repair protein [Methanosarcina mazei Go1]
 gi|20906190|gb|AAM31378.1| DNA mismatch repair protein [Methanosarcina mazei Go1]
          Length = 689

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 213/371 (57%), Gaps = 7/371 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L +  IN+IAAGE+IERP+  +KEL++NS+DA ++ +   +  GGK    I DNG 
Sbjct: 5   KIRILDKDTINKIAAGEVIERPASVVKELVDNSIDAGATEIRIEVEKGGKRSILIRDNGC 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  +A ++H TSK++  +D   I T GFRGEAL SI A++ + +++RPP+   G 
Sbjct: 65  GMSRADALLAYKKHATSKLTKIEDLDKISTMGFRGEALASITAIAKVEILTRPPEEIAGT 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+  +      PGT V V+DLF+  PAR  +LK+++ E   ITD + R+A+A 
Sbjct: 125 KVVIHGGKVEEISDAGTAPGTSVHVKDLFYNTPARRKYLKTDRTELAHITDTVMRLALAN 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SFT         +    + + +    +  ++G D   + + L+  + E  ++GY   
Sbjct: 185 PGISFTLLNEGKPVLR---NTGSSDLFNSMVNLLGPDTARSMLPLDYGTEEFDIRGYVSK 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  NRG+++Q ++F+N R V    I   +R  Y   +P GRYPV VL L +DP +VDVNV
Sbjct: 242 PELNRGDSDQLFLFVNTRPVTSSTINKAVREGYYTKMPKGRYPVAVLALTLDPGEVDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--LSKKMISSFHQDNAPKTHLPK 357
           HP K+ +RF     + + +I +++K +++ G++       +K++  +F    +PK  +P 
Sbjct: 302 HPRKAEVRFSREKEVGDAVISAVEKVLSEHGLAPEIRGKEAKRLQKTFDAPESPKIQIPD 361

Query: 358 YATSLTNTQEK 368
            +  +   +  
Sbjct: 362 TSKVVPERENA 372



 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 3/235 (1%)

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            S    + K   ++      + +       S+   P +++     +      Q+ + YI+
Sbjct: 456 PSEIQPESKKAEEKIEEKIEEKIEEKIEEKSQTRKPKQKANTDLLEDLRVIGQVSRMYIL 515

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  + LVI+DQHAAHER+++E++ +   S K   Q L+TP +I+L   E  L+ E+   
Sbjct: 516 AEKGEDLVIIDQHAAHERILYEQVLR---SKKSRVQELITPVMIELTPKEKVLMEEYIPY 572

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G     FG N   +  +P +  +     ++ D+I +++            E +  T
Sbjct: 573 LEEYGFGISEFGDNTYVVTFVPEVFGRLENTDVIHDVIADLLAEGKVKKETGISEKVSKT 632

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  +I+ G      +M  L+ +++       C HGRPT I +  S ++++F R
Sbjct: 633 FACRAAIKGGAACTPEQMEDLIEQLKTAEAPYSCPHGRPTVITITKSQLDRMFAR 687


>gi|119776159|ref|YP_928899.1| DNA mismatch repair protein [Shewanella amazonensis SB2B]
 gi|189030410|sp|A1SA23|MUTL_SHEAM RecName: Full=DNA mismatch repair protein mutL
 gi|119768659|gb|ABM01230.1| DNA mismatch repair protein MutL [Shewanella amazonensis SB2B]
          Length = 650

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 208/400 (52%), Gaps = 5/400 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  IKEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MAIQVLPPQLANQIAAGEVVERPASVIKELVENSLDAGATRVDIDIDKGGSKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSK+   +D   I +FGFRGEAL SI +VS LTL SR  +    
Sbjct: 61  GGIPKAELALALARHATSKVQTLEDLEAILSFGFRGEALASISSVSRLTLTSRTTEQAEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++   V P A   GT +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGSEVAIRVMPAAHPVGTTIEVADLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               V F+ S       +    +T+  + +R++QV G  F ++A++++ + + + L GY 
Sbjct: 181 IRSDVHFSLSHNGKPVRQYRCAATDTQYLQRLAQVAGRAFADSAIKVDCQHDGMGLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR ++D+ +   +R A+ E +     P  VL L +DP QVDV
Sbjct: 241 QSPALSDMV-DCHYFYVNGRLIRDRLVNHAVRQAFGE-LGTFEQPAFVLSLTLDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF     + +FI+Q +Q A+++      +    +   S             
Sbjct: 299 NVHPAKHEVRFHQARYVHDFILQVLQSALSQMQDLPLAEELPRAQESPASVREHTAGYAP 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           Y  +     E   +  +   T       +   S     V+
Sbjct: 359 YTFNRDAATEAAGVLSSLPDTQRSQRQPEKAASGQRSSVD 398


>gi|323486938|ref|ZP_08092253.1| DNA mismatch repair protein mutL [Clostridium symbiosum WAL-14163]
 gi|323399710|gb|EGA92093.1| DNA mismatch repair protein mutL [Clostridium symbiosum WAL-14163]
          Length = 684

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/348 (33%), Positives = 191/348 (54%), Gaps = 5/348 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +  INQIAAGE+IERP+  +KEL+EN++DA+S+ V   I  GG S  ++TDNG G
Sbjct: 4   IQVLDQNTINQIAAGEVIERPASVVKELLENAVDAKSTAVTVEIRDGGLSMIRVTDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EEIP+A  RH TSKI   +D   + + GFRGEAL SI +V+ + L+++   + +G++
Sbjct: 64  IPKEEIPLAFLRHATSKIRTVEDLFTVASLGFRGEALSSIASVAQVELITKTTGSMSGSR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  ++  V    GT    R+LF+  PAR  FLK+   E   + D++ ++A+++P
Sbjct: 124 YQIEGGEEIALEEVGAPEGTTFIARNLFYNTPARRKFLKTPMTEGAHVADLVEKIALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++S        ++      S N N  + I  + G +   N + +   +  + ++G+ G P
Sbjct: 184 EISIRLIQNGQSKLH---TSGNHNLKDIIYTIFGREIAANLIAVQSGAEPVKVEGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              RGN N    FINGR ++   I   I  AY   +   +YP  +L   I+P  +DVNVH
Sbjct: 241 LIARGNRNYENYFINGRYIKSSLINKAIEDAYKPFMMQHKYPFTMLQFTIEPEFLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           PAK  +RFR+  ++   +  +I  A+++K +     L      S +  
Sbjct: 301 PAKMELRFRDGEMVYRMVYHTISMALSQKELIPQVELPGGGQESANAQ 348



 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 1/262 (0%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
             +    + +       AP+   P                +N     ++LP  +P    D
Sbjct: 422 ADAAEQPETLRMPGTPKAPEAPGPLEFPEQYRPVPAEGKTQNPAGAKEILPKQEPPKQLD 481

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
               +          +   Q+   Y + Q  D L I+DQHAAHE++++EK        + 
Sbjct: 482 LFEEKLLTKQARNEHVLIGQLFDTYWLVQFHDNLYIIDQHAAHEKVLYEKTMASLKKREY 541

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
           TSQ +  P I+ L   E  ++ ++ E    +G + E FG    A+R +PA L      +L
Sbjct: 542 TSQMINPPIILTLSGNEELMLKKYMEHFTAVGFEIEHFGGKEYAVRAVPANLFSIAKKEL 601

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L ++ID + D        D I   +A+M+C  +++    M + E + L+ E+ +  N   
Sbjct: 602 LMEMIDGLTD-GVDQGTPDIINEKIASMSCKAAVKGNHAMSAAEADSLIDELLELENPYA 660

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRPT I +   ++EK F R
Sbjct: 661 CPHGRPTIITMSKYELEKKFKR 682


>gi|153853166|ref|ZP_01994575.1| hypothetical protein DORLON_00560 [Dorea longicatena DSM 13814]
 gi|149753952|gb|EDM63883.1| hypothetical protein DORLON_00560 [Dorea longicatena DSM 13814]
          Length = 701

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 195/368 (52%), Gaps = 6/368 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L    I++IAAGE+IERP+  +KEL+EN++DA ++ +   I  GG SF +ITDNG 
Sbjct: 3   KIQVLDPITIDKIAAGEVIERPASVVKELVENAIDAGATAIVVEIKEGGISFMRITDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++  A  RH TSKI   DD  +I + GFRGEAL SI AV+ + L+++      G 
Sbjct: 63  GIERDDVRSAFLRHSTSKIRSVDDLVHIGSLGFRGEALSSISAVAQVELITKTRDQTFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I+G K   +       GT   +R LF+  PAR  FLK+   E + + D++ R+A+++
Sbjct: 123 LYRIAGGKEEDLEDTGAPDGTTFIIRQLFYNTPARRKFLKTPMTEASHVGDLMTRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF F     ++      S NG   + I  + G D   N ++    +  + + G+ G 
Sbjct: 183 PHISFQFINNGQSKLH---TSGNGKLKDVIYHIYGRDIAANLLKAEYDAKGLKVTGFLGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    ++NGR  ++  I   I  AY +     +YP VVL +EID   VDVNV
Sbjct: 240 PIISRGNRNFENYYVNGRYAKNNIISRAIEDAYKDFTMQHKYPFVVLHIEIDGEHVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +RF N   + N I  ++ + +++K +     + + K + S     APK      
Sbjct: 300 HPTKMELRFNNQQEVYNAIYSAVDQGLHEKELIPHVEMPEPKPVVSNTPAYAPKPKTGSV 359

Query: 359 ATSLTNTQ 366
           + +    Q
Sbjct: 360 SQTPAAVQ 367



 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 13/317 (4%)

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
            P++    V P +        + ++  ++   ++   ++ I+T   +      + +    
Sbjct: 383 MPQRKKAIVPPPQERDLEYFMSRMKERVLAEHEEKKRREKIATKQAVHTTENIAENISVK 442

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY------ 404
                   +T     +EK+   +N  S + +  S +   +   +P               
Sbjct: 443 ESPSFSSASTPSNVAEEKIPYMQNASSKSKITMSTNTDETTKPEPSLTETPKQMELFEDH 502

Query: 405 -------QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                  Q      Q+ + Y + +  + L I+DQHAAHER+++EK  +   + + TSQ +
Sbjct: 503 LLTREAMQKYKVVGQVFETYWLVEYDNSLYIIDQHAAHERVLYEKTLKSMKTREFTSQMI 562

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
             P +++L   E  L+  + +   R+G + E FG ++ A+R +P  L      +LL  ++
Sbjct: 563 SPPIVLNLSMQEAELLNTYMDQFTRIGFEIEEFGQDSYAVRAVPDNLFSIAKKELLIQML 622

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D + D  T     D I+  +A+M+C  +++   K+   E++ L+ E+    N   C HGR
Sbjct: 623 DSLSDEITRNQSPDLIDEKIASMSCKAAVKGNMKLSVQEVDALIGELLSLDNPYHCPHGR 682

Query: 578 PTFIKLKLSDIEKLFGR 594
           PT I +   ++EK F R
Sbjct: 683 PTIIAMTKRELEKKFKR 699


>gi|198276166|ref|ZP_03208697.1| hypothetical protein BACPLE_02355 [Bacteroides plebeius DSM 17135]
 gi|198270978|gb|EDY95248.1| hypothetical protein BACPLE_02355 [Bacteroides plebeius DSM 17135]
          Length = 685

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 211/479 (44%), Gaps = 6/479 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+  IKEL+EN++DA +  +E ++   GK+  ++ D+G G
Sbjct: 7   IRLLPDSVANQIAAGEVIQRPASVIKELVENAVDAGAKNIEVLVTDAGKTCIRVIDDGRG 66

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  MA +RH TSKI +  D   +HT GFRGEAL SI AV+ + L +   ++  G  
Sbjct: 67  MSETDARMAFERHATSKIREAADLFALHTMGFRGEALASIAAVAQVELKTCSSEDGLGTF 126

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I ISG ++     VA   G+   V++LFF +PAR  FLKS Q E + I     R+A+  P
Sbjct: 127 IQISGSQVEKQEAVACQRGSDFSVKNLFFNVPARRKFLKSNQTELSNIVAEFERIALVNP 186

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF  S   +    +          +RI  V G+      + L+  +  + + GY G P
Sbjct: 187 DISFVLSHNGTEMLNLPALP----LRQRIMGVFGKKLNQELLSLDIDTTMVKIHGYIGRP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R    + + F+NGR ++  +    + +AY   IP+G      +  E++P  +DVN+H
Sbjct: 243 ESARKKGARQFFFVNGRYMRHPYFHKAVSSAYDNLIPVGEQVSYFIYFEVEPSDIDVNIH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ I+F N   +   +  ++++ + +     S     + +            +    T
Sbjct: 303 PTKTEIKFENEQAVWQILSAAVKETLGRFNAVPSIDFDTEGMPDIPAFENSPYTVAPPQT 362

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           S   +           S      + +     ++   +  E          + +++  +  
Sbjct: 363 SFDPSYNPFNTTAVPPSAYSSASATNKETERESFGQDVREWGASTGTSVRSSMNKGGMPD 422

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
               G       +   R+ +E + +    T   S      E+               ED
Sbjct: 423 FGRSGNYTPSFGSHKNRVEWEPLFEGLERTSSDSDIQPEEEVRPFFPESTEWGQASQED 481



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 11/253 (4%)

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
             +  P     +  +S ++ Q +  ++     + +   +        +   EE E    +
Sbjct: 439 RVEWEPLFEGLERTSSDSDIQPEEEVRPFFPESTEWGQASQEDAVTPSFSGEEGEKQSQE 498

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
             +   Q   +YI++    GL+I++Q  AH R++F++      + K  SQ +L P+++  
Sbjct: 499 NSMHHYQYKGSYILTSVKSGLMIINQQRAHIRILFDRYMAQIENRKNASQRMLFPDMVHF 558

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS- 524
              E  ++ E  +DL+ LG      G    +I  IPA +   N  +L+ ++I   I+   
Sbjct: 559 SPSEIPVLEEFMDDLNALGFDLSSLGGGTYSINGIPAGIEGLNPEKLVTEMIQTAIEKGC 618

Query: 525 ----TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                  ++        A       I  G+ +   EMNRL+ ++      +    G+   
Sbjct: 619 KVKEEVQSMLALSLAKAAA------IVPGQVLTDEEMNRLVDDLFAVSTPNYTPDGKTVL 672

Query: 581 IKLKLSDIEKLFG 593
             LK  D+EK+F 
Sbjct: 673 TVLKEDDLEKMFK 685


>gi|209525445|ref|ZP_03273985.1| DNA mismatch repair protein MutL [Arthrospira maxima CS-328]
 gi|209494125|gb|EDZ94440.1| DNA mismatch repair protein MutL [Arthrospira maxima CS-328]
          Length = 578

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/610 (25%), Positives = 271/610 (44%), Gaps = 72/610 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LSE++++ IAAGE+I+  +  ++EL+EN++DA+++R+   +    +   ++ DNG 
Sbjct: 14  SIKILSEEVVDLIAAGEVIDSVAAVVRELVENAIDAKATRISVSLW-PQQWRIEVADNGE 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-- 117
           GM    + +A   H TSKI+   D   I + GFRGEAL SI  +S L ++SRP  +++  
Sbjct: 73  GMNLANLKLAALAHSTSKIATARDLLKISSLGFRGEALHSIAQLSDLEILSRPGFSSSPS 132

Query: 118 --GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                +     +   V  VA+ PGT+V V +LF    +R     +   +      +++++
Sbjct: 133 SGWRVVYNHQGETEMVEAVAIAPGTVVRVSNLFANWSSRRTAGPTATQQLRGAQLLLQQI 192

Query: 176 AIAYPKVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFIN---------NAVELN 225
           A+ +P+V++          +     +T    PE I  +   D            +  E +
Sbjct: 193 ALCHPQVTWQIHQNDRPWLRFGPAMTTQQMLPEFIRGIRAGDLQYLKMDVDPPESVEECH 252

Query: 226 EKSNEITLQGYTGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
           E  ++  L+   G+P   +RG  +   + +NGR V+   +  TI +A+A T    RYP+ 
Sbjct: 253 ENLSKSWLEVVIGLPDRASRGRKDWVKIGVNGRMVRSPELEPTILSAFARTCGRDRYPIC 312

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            + L IDP  +D N HP+K+ I        ++ I  +I + +                  
Sbjct: 313 FVHLHIDPALIDWNRHPSKAEIYLHYLKHWQDQIHLAIDQTLKLN--------------- 357

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
                      P+  ++  N  EKL       ++         T     +  E  +    
Sbjct: 358 -----------PESLSAGVNPIEKLLRVSEDTASY-------RTRPTPLESAENPQRIDV 399

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
               A  QIH  YI+++  +GL +V+QH AHER+I+E++ + +    +++  +L      
Sbjct: 400 PKLKAIGQIHNTYIVAEHPEGLWLVEQHIAHERVIYEQLCRRWQVIPLSTPIILAN---- 455

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
                  L     E L RL ++ + FG    AIR  P IL  +       D  + +I+ S
Sbjct: 456 -------LSEAQLEQLTRLNLEVDPFGEGLWAIRSAPEILCDR------PDCQEALIELS 502

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
               LQ          AC  +IR+G  +   EM  LL +     +   C HGRP F+ L+
Sbjct: 503 HGGDLQ----AAQVATACRSAIRNGTPLSLTEMQTLLDQWVTTRSPRTCPHGRPIFLSLE 558

Query: 585 LSDIEKLFGR 594
            S + + F R
Sbjct: 559 ESSLARFFRR 568


>gi|307192776|gb|EFN75866.1| Mismatch repair endonuclease PMS2 [Harpegnathos saltator]
          Length = 672

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/656 (21%), Positives = 270/656 (41%), Gaps = 78/656 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  ++++ I+ I +G+++   +IA+KEL+ENSLD+ ++ ++  +   GK+   I DNG 
Sbjct: 13  KIEAINKETIHHICSGQVVLDLAIAVKELVENSLDSGATVIDIKLIDYGKTCISINDNGS 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++      +H TSK+ +  D   ++TFGFRGEAL S+ A+S L+++++   +  G 
Sbjct: 73  GVLEQDFEGLGLKHHTSKLREFTDLIEVNTFGFRGEALSSLCALSELSIITKHSLSEHGF 132

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++      I     P A   GT V VR++F  +P R   F K+ + E      V+    +
Sbjct: 133 KLEFDRNGILKKKEPFAREKGTTVHVRNIFKNLPVRAKEFQKNLKKEYARTIQVLYGYCL 192

Query: 178 AYPKVSFTF--STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-------- 227
               V  T   +    +   +    ++    + I+ V G+  ++  V+L  +        
Sbjct: 193 VSTNVKITCFNTISSKSPNLIVATRSSNYVLDNINSVFGKKALDGIVKLELQAPDEMTLQ 252

Query: 228 --------SNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                     +   + Y  +     G +  ++ + ++NGR      I   +   Y +   
Sbjct: 253 EYNLSDNVPMDFDWECYVSVCDHAIGRSSPDRQFFYVNGRPCDLMKISKLVNNVYHKY-N 311

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
             +YP V L +++D +  DVNV P K  I F     I   +  S+    +K   + ++  
Sbjct: 312 NKQYPFVFLNIKLDRQSADVNVTPDKRTIFFTQERFILATLKYSLIAKWDKMQGNFTAKT 371

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNT-------------------------------- 365
              +  S  +  +P    P      T++                                
Sbjct: 372 LTDLNFSLKRAISPNNAHPPAKRLQTSSSISHMSRNNDIWNDIKLRKKSVNVEMMINITM 431

Query: 366 -QEKLFLQEN--RLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLGIACAQIHQN 416
            ++KL  ++N  + S N           E N    E E         +       Q +  
Sbjct: 432 IKQKLKAKQNVVKASINTGRRIKYRVQMEGNQGDAEKELQRELTKDSFSKMEIVGQFNLG 491

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           +II++  D L I+DQHA  E+  FEK     N TK+ +Q L+ P+ ++       ++++H
Sbjct: 492 FIIARLEDDLFIIDQHATDEKFRFEKF---SNETKLKTQKLIIPKPLNFSALNETILIDH 548

Query: 477 DEDLHRLGIKAER----FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---- 528
            +     G   +          I +  +P     +   + + +++  I +  +       
Sbjct: 549 QQTFEDNGFTFKIDKQAEPGKRIELIGMPVSGGWQFGQEDIEELVFLIREGGSENKEKHI 608

Query: 529 -LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               R+  +LA+ AC  ++  G  + + EM RL+ +M +  N   C HGRPT   L
Sbjct: 609 FRPSRVRQMLASRACRSAVMIGTALNTNEMQRLIMQMTQMQNPWNCPHGRPTIRHL 664


>gi|332031616|gb|EGI71088.1| Mismatch repair endonuclease PMS2 [Acromyrmex echinatior]
          Length = 672

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 138/656 (21%), Positives = 267/656 (40%), Gaps = 78/656 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  ++ + I+ I +G+++   +IAIKEL+ENSLD+ ++ ++  +   GK+   + DNG 
Sbjct: 13  KIEAINRETIHHICSGQVVLDLAIAIKELVENSLDSGATVIDVKLTDYGKTCISVNDNGS 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++      +H TSK+ +  D + ++TFGFRGEAL S+ A+S L++++R   N  G 
Sbjct: 73  GVLEQDFEGLGLKHHTSKLREFTDLTEVNTFGFRGEALSSLCALSELSIVTRHASNEHGF 132

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++      + +   P A   GT V V+++F  +P R   F K+ + E      V+    +
Sbjct: 133 KLEFDRNGVLTKKEPCAREKGTTVHVKNIFKNLPVRAKEFQKNLKKEYARAIQVLYSYCL 192

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------ 229
               V  T S +    +   +       +    ++ V G+  ++  V+L  ++       
Sbjct: 193 VSTSVKITCSNLISGKSPNLIVATRNTDDVLNNVNSVFGKKSLDGIVKLELQTPDETVLQ 252

Query: 230 ----------EITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                     +   + Y        G +  ++ + ++NGR      +   I   Y +   
Sbjct: 253 EYNLPNDIIVDFDWECYVSTCNHTIGRSSPDRQFFYVNGRPCDLAKVGKLINNVYHKY-N 311

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
             +YP V   L++D +  DVNV P K  I      +I   +  S+    +K   + +   
Sbjct: 312 NKQYPFVFFNLKLDRQCADVNVTPDKRTIFVTQERLILATLKFSLTIKWDKLQGNFTVKT 371

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN------------------ 379
             ++     +  +     P       +      ++E+ + TN                  
Sbjct: 372 LTELNFGLKRTISSSHTQPPAKRLQVSPSVSYIVKESDIQTNIKSMKKPVDTEMMISIVT 431

Query: 380 -----------------------DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                                    +  +      + +  +E     +       Q +  
Sbjct: 432 IKEKLNEKVNIARTPVSTAKRIKYRVQMEANQSEAEKELQKELTKDSFGKMEIIGQFNLG 491

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           +II++  D L I+DQHA  E+  FEK+    N TK+ +Q L+ P++++       +++EH
Sbjct: 492 FIIARLEDDLFIIDQHATDEKFRFEKL---SNETKLKTQKLIVPKLLNFSALNETILIEH 548

Query: 477 DEDLHRLGIKA---ERFGPN-AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---- 528
            +     G      E+  P   I +  +P     +   + + ++I  I ++         
Sbjct: 549 QQMFEDNGFTFNINEQAEPGKKIELIGMPVSGHWQFDQEDIEELIFLIREAGNENMDKHI 608

Query: 529 -LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               R+  +LA+ AC  ++  G  +   EM RL+ +M +  N   C HGRPT   L
Sbjct: 609 YRPSRVRQMLASRACRSAVMIGTALNFSEMQRLITQMAQMQNPWSCPHGRPTIRHL 664


>gi|323691986|ref|ZP_08106234.1| DNA mismatch repair protein MutL [Clostridium symbiosum WAL-14673]
 gi|323503909|gb|EGB19723.1| DNA mismatch repair protein MutL [Clostridium symbiosum WAL-14673]
          Length = 684

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/348 (33%), Positives = 192/348 (55%), Gaps = 5/348 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +  INQIAAGE+IERP+  +KEL+EN++DA+S+ V   I  GG S  ++TDNG G
Sbjct: 4   IQVLDQNTINQIAAGEVIERPASVVKELLENAVDAKSTAVTVEIRDGGLSMIRVTDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EEIP+A  RH TSKI   +D   + + GFRGEAL SI +V+ + L+++   + +G++
Sbjct: 64  IPKEEIPLAFLRHATSKIRTVEDLFTVASLGFRGEALSSIASVAQVELITKTTGSMSGSR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  ++  V    GT    R+LF+  PAR  FLK+   E   + D++ ++A+++P
Sbjct: 124 YQIEGGEEIALEEVGAPEGTTFIARNLFYNTPARRKFLKTPMTEGAHVADLVEKIALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++S        ++      S N N  + I  + G +   N + +   ++ + ++G+ G P
Sbjct: 184 EISIRLIQNGQSKLH---TSGNHNLKDIIYTIFGREIAANLIAVQSGADPVKVEGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              RGN N    FINGR ++   I   I  AY   +   +YP  +L   I+P  +DVNVH
Sbjct: 241 LIARGNRNYENYFINGRYIKSSLINKAIEDAYKPFMMQHKYPFTMLQFTIEPEFLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           PAK  +RFR+  ++   +  +I  A+++K +     L      S +  
Sbjct: 301 PAKMELRFRDGEMVYRMVYHTISMALSQKELIPQVELPGGGQESANAQ 348



 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 112/262 (42%), Gaps = 1/262 (0%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
             +    + +       AP+   P                +N     ++LP  +P    D
Sbjct: 422 ADAAEQPETLRMPGIPKAPEAPGPLEFPEHYRPVPAEGKTQNPAGAKEILPKQEPPKQLD 481

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
               +          +   Q+   Y + Q  D L I+DQHAAHE++++EK        + 
Sbjct: 482 LFEEKLLTKQARNEHVLIGQLFDTYWLVQFHDNLYIIDQHAAHEKVLYEKTMASLKKREY 541

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
           TSQ +  P I+ L   E  ++ ++ E    +G + E FG    A+R +PA L      +L
Sbjct: 542 TSQMINPPIILTLSGNEELMLKKYMEHFTAVGFEIEHFGGKEYAVRAVPANLFSIAKKEL 601

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L ++ID + D        D I   +A+M+C  +++    M + E + L+ E+ +  N   
Sbjct: 602 LMEMIDGLTD-GVDQGTPDIINEKIASMSCKAAVKGNHAMSAAEADSLIDELLELENPYA 660

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRPT I +   ++EK F R
Sbjct: 661 CPHGRPTIITMSKYELEKKFKR 682


>gi|332995410|gb|AEF05465.1| DNA mismatch repair protein [Alteromonas sp. SN2]
          Length = 589

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 151/553 (27%), Positives = 253/553 (45%), Gaps = 21/553 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA + ++E  I  GG    ++ DNG
Sbjct: 1   MSIQLLSPQLANQIAAGEVVERPASVVKELLENSLDAGADKIEIDIEKGGHKRIRLKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKIS  DD   I + GFRGEAL SI +VS LTL S+    N  
Sbjct: 61  GGIAKDELQLALSRHATSKISTLDDLERILSLGFRGEALASISSVSRLTLTSKTESQNEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++  +++P A   GT ++V DLF+  PAR  FL++E+ E   I DV++R+A+
Sbjct: 121 WQAYCEGREMAVNIQPAAHPKGTTIDVADLFYNTPARRKFLRAEKTEFQHIEDVVKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +YP  SF          +      +G+   RI+ V+G+ FI+NAV +N +   IT+  + 
Sbjct: 181 SYPHASFILKHNGKTTKRYIAD-KHGSLAPRIAAVVGQKFIDNAVHINVEYEGITMNAWL 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G     R + +  + F+NGR ++DK I+  IR AY     +   P  V+ L +DP+ VDV
Sbjct: 240 GSEVMLRSSNDCQFSFVNGRGMRDKLIMHAIRQAYESVWGVLEQPSFVVYLTLDPKDVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF+   ++ +FI +++  A++     T+   ++    +   D   K + P+
Sbjct: 300 NVHPAKHEVRFQQGRLVHDFICKTVCDALHS---ITNESETQHHGDAERFDEPVKFNPPQ 356

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
            +              ++        +     S        + A                
Sbjct: 357 QSHDYIRPLSHSPASSSQSGLGASGGASLSGLSGHRQSKAPTAAYQSNFNRLMTPNSDTL 416

Query: 418 IISQTTDGLVIVDQHAAHERLIFEK--------MRQDFNSTKITSQTLLTPEIIDLLEGE 469
             ++      I         +  E             +      +     P ++ +    
Sbjct: 417 SSTEHEQSQHIALNSYCRIYVRNENVYLLDVKFFADVYLQDVFETAEHSQPLLMPVALEV 476

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI----PQLLR-DIIDEIIDSS 524
             +  E  E L+ L  +  +       ++++PA            +LL  D+ D+     
Sbjct: 477 AHVEPEKIEVLNALNFEINQVAGK-YRLQQVPAGTRHFPWIRWFERLLESDVADDDKRYE 535

Query: 525 TTYTLQDRIENIL 537
              +    ++ IL
Sbjct: 536 LVLSDDQDLDEIL 548


>gi|62185520|ref|YP_220305.1| DNA mismatch repair protein [Chlamydophila abortus S26/3]
 gi|81312332|sp|Q5L4T7|MUTL_CHLAB RecName: Full=DNA mismatch repair protein mutL
 gi|62148587|emb|CAH64359.1| DNA mismatch repair protein MutL [Chlamydophila abortus S26/3]
          Length = 582

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 141/522 (27%), Positives = 255/522 (48%), Gaps = 14/522 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L    INQIAAGE+IE     +KEL+EN+LDA +  +E    GGG+    + DNG 
Sbjct: 6   RIQLLDTVTINQIAAGEVIENAVSVVKELVENALDAGADEIEVETLGGGQGLIVVKDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+S+E+ +A++RH TSKI +  D  ++ +FGFRGEALP+I ++S + ++S P     G+
Sbjct: 66  GMSSDEVTLALKRHATSKIEEFSDVFSLSSFGFRGEALPAIASISKMEILSCPKGEE-GS 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G ++ +        GT + V  LF+ +P R  F KS Q     +  ++    ++ 
Sbjct: 125 RTIIHGGEVIAAEAKPRQLGTTISVDSLFYNVPVRRGFQKSPQTNRIAMRKLLENRILSL 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V +++ + +   + +          ER++ V+GE F+  A+ ++     I + G+ G 
Sbjct: 185 ESVGWSWISERQQEFHILKHQG---LAERVAFVMGEGFMQEALRVDRVEEPIRIVGFLGS 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F+R       +FIN R V    I   I  AY   +P  RYPV VL L + P+  D NV
Sbjct: 242 PCFHRPTRLGQRIFINDRPVDSPLISKQISEAYTMLLPPQRYPVFVLKLYLPPQWCDFNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTHLPK 357
           HP K+ +R      +R F+ +SI + + +   S+S   +   + +  F     P+  L +
Sbjct: 302 HPQKTEVRILKEEFVREFLSESIGEVLARSQESSSYKKTSLTLPTLRFFDGQLPEISLEQ 361

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              S++    +L     R S + L    +    +    +   E+   +   +  +I    
Sbjct: 362 PRESMSLPVTQLATPSIR-SISSLGCQQEIPAVDTQTEIVWGESQEVRFLTSLGKI---- 416

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           ++++ ++G+  +   AA + L +  + ++       SQ+ L P  +++   E   ++ H 
Sbjct: 417 VLAEDSEGVHAIFTEAARKHLFYLSLIENQQEH-YKSQSFLVPLCLEVTPQERVFLLSHI 475

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           E+  +LGI+  + GP   AI   P  + ++ +   +  +  E
Sbjct: 476 EEFKQLGIEISQIGPCVFAIESAPTFIGEEELKSWILSLAAE 517


>gi|283797911|ref|ZP_06347064.1| DNA mismatch repair protein MutL [Clostridium sp. M62/1]
 gi|291074378|gb|EFE11742.1| DNA mismatch repair protein MutL [Clostridium sp. M62/1]
          Length = 734

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/334 (35%), Positives = 184/334 (55%), Gaps = 5/334 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L +  INQIAAGE+IERP+  +KEL+EN++DA ++ V   I  GG    ++TDNG G
Sbjct: 4   IRVLDQNTINQIAAGEVIERPASVVKELLENAIDARATAVTIEIKEGGIGLIRVTDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EEIP A  RH TSKI   +D   + + GFRGEAL SI +V+ + L+++   + +G +
Sbjct: 64  IPREEIPTAFLRHATSKIRTVEDLFTVASLGFRGEALSSIASVAQVELITKTEDSMSGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  S+  V    GT   VR+LF+  PAR  FLK+   E   I D++ ++++++P
Sbjct: 124 YCIDGGEEKSIEEVGAPEGTTFLVRNLFYNTPARRKFLKTPATEGAHIADLVEKISLSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VS  F     +R      S N +  + I  + G +  +N + ++   + + + G+ G P
Sbjct: 184 EVSIRFIQNGQSRLH---TSGNHSLRDIIYTIYGREIASNLLPVDMGEDPVRVTGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              RGN N    FINGR ++   I   I  AY   +   +YP  +L   I+   +DVNVH
Sbjct: 241 LIARGNRNFENYFINGRYIKSSLINKAIEDAYKPFMMQHKYPFTMLHFAIESSFLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           PAK  +RFR+  +I   +  ++  A+  + +   
Sbjct: 301 PAKMELRFRDGEMIYKMVYHTVSMALAGRELIPE 334



 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 108/261 (41%), Gaps = 3/261 (1%)

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            +   ++         A        A  +   + K          N  +       S   
Sbjct: 475 HAPAKEQESLGVRSPGASDEDESGRAARVQAAKAKGQQDGQDGGGNPEVSGQPEQLSLFE 534

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             +   EA          Q+   Y + +  D L I+DQHAAHE++++EK      S + T
Sbjct: 535 PKLLSREAREEH--RIIGQLFDTYWLVEYRDSLYIIDQHAAHEKVLYEKTVASLKSREYT 592

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ +  P I+ L   E  L+ ++ E    +G + E FG    A+R +PA L      +LL
Sbjct: 593 SQMINPPIILTLNSSEKLLLEKYMEHFTGIGFEIEPFGGREYAVRAVPANLFSIAKKELL 652

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            ++ID + D        D +   +A+M+C  +++   ++   E   L+ E+ +  N   C
Sbjct: 653 MEMIDGLSDEMDRGN-SDLLNEKIASMSCKAAVKGNHRLSEAEARALIDELLELENPYAC 711

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRPT I +   ++EK F R
Sbjct: 712 PHGRPTIISMSRYELEKKFKR 732


>gi|325680314|ref|ZP_08159874.1| DNA mismatch repair protein, C-terminal domain protein
           [Ruminococcus albus 8]
 gi|324108023|gb|EGC02279.1| DNA mismatch repair protein, C-terminal domain protein
           [Ruminococcus albus 8]
          Length = 713

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/417 (29%), Positives = 206/417 (49%), Gaps = 6/417 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS ++   IAAGE+I+RP+  +KEL+EN++DA ++ +   I  GG+++ ++TDNG G
Sbjct: 4   IRVLSREVSELIAAGEVIDRPASVVKELLENAIDAGATNITVEIKNGGRTYMRVTDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++P A  RH TSKIS  DD  +I T GFRGEAL SI AV+ + ++++   ++ G  
Sbjct: 64  IAPDDLPTAFLRHATSKISQKDDLDSIMTLGFRGEALASICAVAKVDVLTKRKDDSYGTH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
            AI G +  +        GT   VRD+F+ +PARL FLK +  E N + D++ ++ +++P
Sbjct: 124 YAIEGAEEKTSEQCGCPDGTTFVVRDIFYNVPARLKFLKKDSSEANHVADLVTKLTLSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF               + +G     +  V G +F N+ +E++     I + G+   P
Sbjct: 184 DISFKLIRDNKTEL---LTAGDGKIYSAVYSVYGREFANSLIEVDYTWQGIHVHGHAVKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              + N      F+NGR V+ K   + +  AY   I +G++P  VL +++ P  VDVNVH
Sbjct: 241 LEAKLNRKFQNFFVNGRFVKSKACAAALEEAYRNNIMVGKFPACVLYIDVPPNTVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKTHLPKYA 359
           P K  +RF +  ++   +  +++ A+ ++      VL KK   S H+    P        
Sbjct: 301 PTKIEVRFSDEKLMHEAVYFAVKNALMERDAPREMVLDKKKNFSAHELYDFPPEDNSVQL 360

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                 +E L  +    S  + +     T         E  A   +      Q    
Sbjct: 361 EFGVEEKETLTEEVPADSIREEMVKPVVTEPAKEMMTPEQPAPQPKHEPEKIQYQPM 417



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 4/270 (1%)

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           I+++       L    + S     APK         +    +++ L +     +      
Sbjct: 445 IDEESRKAGEDLFLSELGSAEPAPAPKPKEKITVEEINKVLQEMPLPDAPDENDSSFHYI 504

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                  +   E     +    I   ++ + Y+++Q  D ++++D+HAAHER IFEK++ 
Sbjct: 505 SGRSFVRSVVQEVKRTPNKPKPIVVGELFKTYVVAQAGDEMLLMDKHAAHERYIFEKIKG 564

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
           D    ++ +Q LL P ++ L   E   +  + + L RLG + E      +A++ +P IL 
Sbjct: 565 DI--NELETQMLLEPVMVMLSYEEYDALAANVDKLGRLGFEIEPDVAPTVAVKGVPIILG 622

Query: 506 -KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
             KN  +++  +    I       L D  +++  ++AC  +I++      IE+  LL  +
Sbjct: 623 ADKNPTEVVTALAKNFIQCKHDPQL-DIFDDLYHSLACKAAIKANDDSTLIELQALLNAV 681

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +N  +  C HGRP  IKL   DIE+ F R
Sbjct: 682 YENNETRYCPHGRPVLIKLTKKDIERQFRR 711


>gi|281412084|ref|YP_003346163.1| DNA mismatch repair protein MutL [Thermotoga naphthophila RKU-10]
 gi|281373187|gb|ADA66749.1| DNA mismatch repair protein MutL [Thermotoga naphthophila RKU-10]
          Length = 510

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 156/596 (26%), Positives = 274/596 (45%), Gaps = 88/596 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I++L E +I +IAAGE+I  PS  +KEL+ENSLDA++ R+   I  GGK+  +++DNG
Sbjct: 1   MRIKRLPESLIRKIAAGEVIHNPSFVLKELVENSLDAQADRIVVEIENGGKNMVRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GMT EE  +A++ + TSKI   +D   I T+GFRGEAL SI  VS   ++++  ++   
Sbjct: 61  IGMTREEALLAIEPYTTSKIESEEDLHRIRTYGFRGEALASIVQVSRTKIVTKTEKDALA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            Q+ I+G K+  +     + GT VEVRDLFF +P R   LKS  +E  +  ++  R  + 
Sbjct: 121 TQLMIAGGKVEEISETHRDTGTTVEVRDLFFNLPVRRKSLKSSAIELRMCREMFERFVLV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F F++       ++      N  ER + +I ED     +   E+ + + ++G   
Sbjct: 181 RNDVDFVFTSDGKI---VHSFPRTQNIFER-AILILEDLRKGYITFEEELSGLRIKGIVS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R +    Y ++NGR V  + +   +   Y   +P   YPV VL +E++P ++DVN
Sbjct: 237 SREVTRSSRTGEYFYVNGRFVVSEELHEVLMKVYD--LPKRSYPVAVLFIEVNPEELDVN 294

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           +HP+K  ++F N   ++  + +++++ + +K   +                         
Sbjct: 295 IHPSKIVVKFLNEEKVKKSLEETLKRNLARKWYRS------------------------- 329

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                       +    +S++ L  ++ P+Y                       +   Y 
Sbjct: 330 ------------VAYEEISSHALSVAESPSYRW-------------------FLVKGKYA 358

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +  DGL+ VD HA HER I+E++    +  K   +  +T            L  E  +
Sbjct: 359 VVEVEDGLLFVDLHALHERTIYEEILSKKSWRKRRVKRNIT----------VVLSREEKQ 408

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L   G   +     A+ + EIP  L++  + +  RD             + ++++  +A
Sbjct: 409 KLEEYGFSFQGE-EGALKVIEIPEFLTEDVVEEFFRDF-----------PVDEKLKERIA 456

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             AC  + +SG      E+   L ++       +C HGRP   K+   D+++ F R
Sbjct: 457 LAACKLATKSGEF--DEEIASKLLDVFFKKRFERCPHGRPISFKISYEDMDRFFER 510


>gi|226324942|ref|ZP_03800460.1| hypothetical protein COPCOM_02734 [Coprococcus comes ATCC 27758]
 gi|225206290|gb|EEG88644.1| hypothetical protein COPCOM_02734 [Coprococcus comes ATCC 27758]
          Length = 356

 Score =  357 bits (916), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 125/350 (35%), Positives = 194/350 (55%), Gaps = 6/350 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L +  I++IAAGE+IERP+  +KEL+EN++DA S+ V   I  GG S  +ITDN
Sbjct: 1   MPHIELLDQITIDKIAAGEVIERPASVVKELVENAIDAGSTAVTVEIEEGGISLIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++  A  RH TSKI   +D +++ + GFRGEAL SI AV+ + L+++  ++  
Sbjct: 61  GCGIAKQDVENAFLRHSTSKIRSAEDLTHLSSLGFRGEALSSISAVARVELITKTREDVF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  +        GT   VR LFF  PAR  FLK+   E + I+D++ R+A+
Sbjct: 121 GTKYIIEGGKGRTPEETGAPDGTTFLVRQLFFNTPARRKFLKTPMTEASHISDLLTRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F      +      S NG   + I  + G +  NN + L  + + + L GY 
Sbjct: 181 SHPDISFRFINNGQVKLH---TSGNGKMKDVIYHIYGREIANNLIPLEFEKDGVRLSGYL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  NRGN N    F+NGR V++  +   I   Y +     RYP V   +EI+P ++DV
Sbjct: 238 GKPVINRGNRNFENYFVNGRYVRNSILAKAIEDGYKDFTMQHRYPFVAFQIEINPEKIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           NVHP+K  +RF N   I N + ++I K +++  +     +S+  +    +
Sbjct: 298 NVHPSKMELRFSNQQGIYNLLYEAISKGLHEPELIPEVEMSEIKVPGMSE 347


>gi|15806699|ref|NP_295419.1| DNA mismatch repair protein MutL [Deinococcus radiodurans R1]
 gi|20455164|sp|Q9RTR0|MUTL_DEIRA RecName: Full=DNA mismatch repair protein mutL
 gi|6459465|gb|AAF11253.1|AE002011_4 DNA mismatch repair protein MutL [Deinococcus radiodurans R1]
          Length = 547

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 144/598 (24%), Positives = 245/598 (40%), Gaps = 73/598 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L   +   IAAGE++ RP   ++EL+EN+LDA +SR+E  + GGG    Q+ DNG 
Sbjct: 4   PIHVLPPHVARLIAAGEVVSRPLDVVRELVENALDAGASRIEIEVDGGGLERVQVRDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKISDDFS----NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G+ ++ +P+A  RH TSK++        ++ T GFRGEAL +      L L +RP     
Sbjct: 64  GIAAQSVPLAPARHATSKLTAGPETGSLSVTTLGFRGEALWAAAQAGELELTTRPAAQVG 123

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            A++   G+ +   R      GT V V  LF  +PARL    S   E   IT ++ R  +
Sbjct: 124 AARLRAQGDAVEVSRTS-APAGTTVTVSQLFARLPARLRTQASAAAEVRDITALLGRYVL 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            +  + +  +     R          +    ++ V G    N  + L+       ++G  
Sbjct: 183 HHSALHWRLTVDGDPRLT----HAPADHRGAVATVYGPLSANRVLTLDTP----GVRGVV 234

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFI-LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             P   R   ++ +  +NGR +         +  AYAE +P G  P+ VL L + P   D
Sbjct: 235 SRPELTRARRDRMHFAVNGRPIVAPPELERAVIDAYAELLPAGTAPLCVLDLTVAPEDYD 294

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            N+HPAK  +   +   +   +  ++  A+    +  ++                    P
Sbjct: 295 PNIHPAKQVVALADLPAVALRVRDAVAGALAGHPLVRAAPALIA------------PPEP 342

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
             A +  N  +                                               + 
Sbjct: 343 HPAPTAGNFPD---------------------------------------LTLLGVYQEL 363

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y+++Q    L +VD HAAHER ++E++             L TPE++ L   + A + E 
Sbjct: 364 YLLAQGEGDLWVVDAHAAHERALYERL--GRELGTAAPLELPTPELLHLTPEQTARLHER 421

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
             +L   G+  E FG     +R +PA L+   +P+L   +++  +         D    +
Sbjct: 422 GAELRGWGLTIEDFGAGLARLRTLPAALAALPVPRLHEVVVETALSGG-----PDPRREV 476

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LA +AC  ++++G  + +     +L  + +      C HGRPT ++L   D+   FGR
Sbjct: 477 LARLACLPALKAGM-LDAERGALVLAALRECEQPWACPHGRPTVLRLSERDLAHAFGR 533


>gi|24372192|ref|NP_716234.1| DNA mismatch repair protein MutL [Shewanella oneidensis MR-1]
 gi|81845917|sp|Q8EJ70|MUTL_SHEON RecName: Full=DNA mismatch repair protein mutL
 gi|24346101|gb|AAN53679.1|AE015507_5 DNA mismatch repair protein MutL [Shewanella oneidensis MR-1]
          Length = 631

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 202/371 (54%), Gaps = 6/371 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SR++  I  GG    +I DNG
Sbjct: 1   MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGASRIDIEIDKGGSKLIKIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSK+   DD   I +FGFRGEAL SI +VS LTL SR  + +  
Sbjct: 61  SGIPKEELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQSEA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G ++   V P A   G+ +EV DLFF  PAR  FLKS++ E   I + ++R+A+
Sbjct: 121 WQAYAEGVEMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
               + FT +                 + +R++QV G  F + A+ +  + +++ L GY 
Sbjct: 181 VRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRPFADEALRVECQHDDLRLSGYL 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +    +  Y ++NGR V+D+ +   +R A+A+       P  VL+L+IDP QVDV
Sbjct: 241 QSPW-STVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQK-AEVEQPGYVLMLDIDPHQVDV 298

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF     + ++I+Q++Q A+ + G           I        P+T    
Sbjct: 299 NVHPAKHEVRFHQSRYVHDYILQALQSALEEAGELRFEP-HSPQIDDSSPYVKPETESSA 357

Query: 358 YATSLTNTQEK 368
           +    T +  K
Sbjct: 358 FELQSTESNAK 368


>gi|270158033|ref|ZP_06186690.1| putative DNA mismatch repair protein MutL [Legionella longbeachae
           D-4968]
 gi|289163699|ref|YP_003453837.1| DNA mismatch repair protein MutL [Legionella longbeachae NSW150]
 gi|269990058|gb|EEZ96312.1| putative DNA mismatch repair protein MutL [Legionella longbeachae
           D-4968]
 gi|288856872|emb|CBJ10683.1| DNA mismatch repair protein MutL [Legionella longbeachae NSW150]
          Length = 544

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 151/535 (28%), Positives = 261/535 (48%), Gaps = 45/535 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L   I NQIAAGE+IERP+  +KEL+ENS DA ++ +    + GG +  +I+DNG 
Sbjct: 4   RIRQLPPFIANQIAAGEVIERPASVVKELLENSFDAGATAITVETSYGGLNQIKISDNGV 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++P+A+  H TSKI+  DD   I + GFRGEAL SI +V+ +++ S+P    T  
Sbjct: 64  GIFAEDLPLAIAPHATSKINSLDDLYAIDSMGFRGEALASIASVAKVSISSKPALQETAM 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G + ++  P A   GT V+V DLFF  P R  FLKSE++E   I  V++R A++ 
Sbjct: 124 MLRVIGTE-TTCSPCARAVGTTVDVVDLFFNAPVRKRFLKSEKLEFQAIETVVKRFALSA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PK++ T        + +   ++      R+++++G  F+ +A+ L+     + L+G+   
Sbjct: 183 PKIALTLKHNGKQVFYLPAVTSEHALLSRMTRILGSAFVQDAIYLDVDHGSMKLRGWISG 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             F R  +++ +V+IN R V+DK I   ++ AY   +  GR+P  VL   I+  +VDVNV
Sbjct: 243 IKFQRSQSDRLWVYINERMVKDKLIHHALKQAYEGLLHPGRFPACVLYFTINHAEVDVNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF+ P +I +F    +  A+  +       + +  I   +Q        PK A
Sbjct: 303 HPTKHEVRFQQPRLIFDFFTSQLAAALATQTKKNPDPICELNIP-VNQAKEIYEPYPKLA 361

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                                         SE  + +E+              ++ +YI+
Sbjct: 362 ----------------------------LISEHVNSLEQP----------WVILNNHYIL 383

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                   IV+  A  +    +++     S  + S+ LL P    L       + +  + 
Sbjct: 384 VFLHQQPYIVNLVALQQFKAQQQL--AGLSFPLASRPLLVPIRCSLPSKIAPKLPDFIQS 441

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           L++LGI  E  G   + IR IP  +   ++ +L  + +  +   +++   +  IE
Sbjct: 442 LYQLGIHVEHIGDQDVFIRSIPLCMPYLDL-RLFLEALTRLEVINSSKLTELMIE 495


>gi|304404424|ref|ZP_07386085.1| DNA mismatch repair protein MutL [Paenibacillus curdlanolyticus
           YK9]
 gi|304346231|gb|EFM12064.1| DNA mismatch repair protein MutL [Paenibacillus curdlanolyticus
           YK9]
          Length = 684

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 196/366 (53%), Gaps = 5/366 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E++ NQIAAGE++ERP+  +KEL+EN++DA ++ ++  I  GG +  ++ DNG G
Sbjct: 4   IRVLDEQLANQIAAGEVVERPASVVKELVENAVDAGATTIDLTIEEGGLNLIRVIDNGAG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +EI  A QRH TSK+  S D   I + GFRGEALPSI AVS +T +S P ++  G Q
Sbjct: 64  IEPDEIETAFQRHATSKLLSSADLFRIASLGFRGEALPSIAAVSRVTCISSPTKDGLGKQ 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G  +    PV+   GT + VRDLF+  PARL ++KS Q E   I+D + R+A+A+P
Sbjct: 124 LVIEGGTVQQSGPVSAPQGTEMSVRDLFYNTPARLKYMKSIQTELGHISDYVNRIALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F+     +   ++      G+  + I+ V G       + +  ++ +  L GY   P
Sbjct: 184 GIAFSLKHNGN---ELLRTPGTGDRLQVIAAVYGTSTAKAMLPVEGETPDYVLTGYVSKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   V +NGR ++   +   +   Y   +P+ R+P+V L + + P  +DVNVH
Sbjct: 241 ELTRANRNAITVIVNGRYIRSFLVNQALLQGYHTLLPINRFPLVTLEIAMHPSLLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  +RF   T +R  I QS++K + +         S     S       +    +   
Sbjct: 301 PSKMEVRFSKETELRELIEQSVKKTLGRDRYIPEPAASGDQERSKPVYVQERIAFHRPEP 360

Query: 361 SLTNTQ 366
           S   + 
Sbjct: 361 SFPASA 366



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 109/267 (40%), Gaps = 4/267 (1%)

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           ++ I   +      I     +       P    +          Q    S         P
Sbjct: 419 RESIPPDATERLYAIPPAADERVNAVREPSMDDADFYAPAPAEQQAQPASEQRASTGLPP 478

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             + + D     E   +       Q+H  Y+I+Q+ DGL ++DQHAAHER+ +E   + F
Sbjct: 479 RIAVERD----PETPPFPELSWIGQLHGTYLIAQSEDGLYMIDQHAAHERIHYEYYVEKF 534

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
              +  SQ LL P  ++L  GE A + +  E L  +G++ E FG N   +R  P  L   
Sbjct: 535 GRPQQASQQLLVPITLELTAGEAAQLHDKLELLAEVGLELESFGANTFLVRAHPEWLPAG 594

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +   ++ ++I+ ++       +Q   E      +C  SI++ +++   E   LL  +   
Sbjct: 595 DEQSIIEEMIEWVLQEKRNVDIQKLREKTAIMCSCKASIKANQRLTREEGEALLDRLGAC 654

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                C HGRP  + +    +EK+F R
Sbjct: 655 GQPYTCPHGRPIVVHISSYQLEKMFKR 681


>gi|307184301|gb|EFN70759.1| Mismatch repair endonuclease PMS2 [Camponotus floridanus]
          Length = 672

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 132/656 (20%), Positives = 274/656 (41%), Gaps = 78/656 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  ++++ I+ I +G+++   +IA+KEL+ENSLD+ ++ ++  +   GK+   ++DNG 
Sbjct: 13  KIEAINKETIHHICSGQVVFDLAIAVKELVENSLDSNATVIDVKLIDYGKTCISVSDNGS 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++      +H TSK+ +  D + ++TFGFRGEAL S+ A+S L++++R   +  G 
Sbjct: 73  GVLEQDFEGLGLKHHTSKLREFTDLTEVNTFGFRGEALSSLCALSELSIVTRHSTSKHGF 132

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++      + +   P A   GT V ++++F  +P R   F K+ + E      V+    +
Sbjct: 133 KLEFDQNGMLTKKEPCAREKGTTVHIKNIFKNLPVRAKEFQKNLKKEYTRAIQVLYSYCL 192

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-------- 227
               +    S +    + + +       +  + I+ V G+  ++  ++L  +        
Sbjct: 193 VSTNIKIACSNLIASKSPHLIVTTRNTDSVLDNINSVFGKKSLDGIIKLELQSPDETTLQ 252

Query: 228 --------SNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                   + +   + Y        G +  ++ + ++NGR      +   +   Y +   
Sbjct: 253 EYNLSNDVTIDFDWECYVSTCDHAIGRSSPDRQFFYVNGRPCDLTKVSKLVNNVYHKY-N 311

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
             +YP V L ++++ +  DVNV P K  I F    +I   +  S+    +K   + ++  
Sbjct: 312 NKQYPFVFLNVKLNRQCADVNVTPDKRTIFFTQERLILATLKFSLTAKWDKLQGNFTAKP 371

Query: 338 SKKMISSFHQDNAPKTHLP-----KYATSLTNTQEKLFLQEN------------------ 374
             ++   F +  +     P     + + S+++  +   +Q N                  
Sbjct: 372 LTELKFGFKRTISSNYVHPPAKRLQISPSISHMAKNDDIQTNIKSMKKPIDVEMTISFTI 431

Query: 375 ------------RLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLGIACAQIHQN 416
                       R   N           E N    E E         +       Q +  
Sbjct: 432 IKEKLKEKKIIVRAPVNIEKRIKYRIQMEANQDEAEKELQRELTKDSFGKMEVIGQFNLG 491

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           +II++  + L I+DQHA  E+  FEK+    N TK+ +Q L+ P+ ++       +++EH
Sbjct: 492 FIITRLENDLFIIDQHATDEKFRFEKL---SNETKLKTQKLIVPKPMNFSALSETILIEH 548

Query: 477 DEDLHRLGIKAERFG----PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---- 528
            +     G              I +  +P     +   + + +++  I ++         
Sbjct: 549 QKMFEDNGFTFNINEQAELGKKIELIGMPVSGHWQFGQEDIEELVFLIREAGNEIKEKHI 608

Query: 529 -LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               R+  +LA+ AC  ++  G  + + EM++L+ +M +  N   C HGRPT   +
Sbjct: 609 FRPSRVRQMLASRACRSAVMIGTALNTNEMHKLIMQMAQMQNPWNCPHGRPTIRHI 664


>gi|332531849|ref|ZP_08407734.1| DNA mismatch repair protein MutL [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038825|gb|EGI75267.1| DNA mismatch repair protein MutL [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 615

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/555 (27%), Positives = 259/555 (46%), Gaps = 41/555 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MNIEILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIQIDIERGGHKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +E+ +A+ RH TSK+   DD  NI + GFRGEAL SI +VS LTL S+P +    
Sbjct: 61  AGISKDELTLALSRHATSKLKSLDDLENICSLGFRGEALASISSVSRLTLSSKPKEQEAA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   V+PVA   GT +EV+DLFF  PAR  FL++E+ E + I ++I+R+A+
Sbjct: 121 WQAFAEGRDMAVQVKPVAHPDGTTIEVKDLFFNTPARRKFLRTEKTEFSHIDELIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   VS T +  +    +   ++       R++QV G+ F    + +      + L G+ 
Sbjct: 181 SRFDVSITLTHNEKVVRQYRAKTDPSQAITRVAQVAGKAFAEQGLHIQSGEGGLQLHGWV 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                        Y ++N R ++DK IL  IR A+ E       P  V+ ++IDPRQVDV
Sbjct: 241 LPVGSANTT---QYTYVNNRMMRDKLILHAIRQAFEEVSGTQELPGFVIYIDIDPRQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKA---INKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHPAK  +RF    +I +FI+Q+I++    +  +  + S+    +   +F +      +
Sbjct: 298 NVHPAKHEVRFHQGRLIHDFILQAIKQVVVPLQGEFTNESASTEAEFTPAFIESTHSSAN 357

Query: 355 LPKYATSLTNTQEKL-----------------------FLQENRLSTNDLLPSDDPTYSE 391
             +        + +L                       +      S +D+         +
Sbjct: 358 NIESEGVFDYPKSQLQPSYSGSTGSSSSSSGTRSVGGAYRAAPSTSHHDVNAFYQGVSEQ 417

Query: 392 DNDPVEESEATH--YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
                + +          ++   + +   I   ++G+ +  +        F+    D   
Sbjct: 418 HAAHFDNAANISAAPHQSVSVDNVLKAVSIISVSEGVCVFSEEQQLYCSHFKYALVDDWH 477

Query: 450 TKI------TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
            +I        + LL P  ++L + +C LI         LG +        + ++++PA 
Sbjct: 478 NQIKEFGSLEGKALLLPVRVNLEKEDCLLIESQQSWFTLLGFEL-VIEKQFVMVKKLPAC 536

Query: 504 LSKKNIPQLLRDIID 518
           L   ++   + +++D
Sbjct: 537 LYLLDVSAAVGELLD 551


>gi|238026311|ref|YP_002910542.1| DNA mismatch repair protein [Burkholderia glumae BGR1]
 gi|237875505|gb|ACR27838.1| DNA mismatch repair protein MutL [Burkholderia glumae BGR1]
          Length = 703

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 211/367 (57%), Gaps = 11/367 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++ +   +  GG     ITD+G G
Sbjct: 32  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGATTLRIALDEGGVKRISITDDGCG 91

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +  ++ T GFRGEAL SI +VS L + SR  Q     +
Sbjct: 92  IPADELPLALMRHATSKIRSLVELESVATLGFRGEALASIASVSELAITSRTEQAPHATR 151

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR+A+A P
Sbjct: 152 IDADT---GALSPAAGTRGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRVALARP 208

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E++  + + G  G+P
Sbjct: 209 DVAISVLHNGRAVEHWNASEP----AVRVAKILGEGFATAHLPLDEQAGPLAVYGCAGLP 264

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 265 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 324

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  +RFR+   I  ++  ++Q+A+ +     +S  +     + H   A ++  P+ A 
Sbjct: 325 PSKIEVRFRDSRSIHQYVFHAVQRALARHAG--ASPGTTAGGHAAHLAPAGESAAPERAP 382

Query: 361 SLTNTQE 367
           + +  Q 
Sbjct: 383 AGSAGQA 389



 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 70/188 (37%), Positives = 109/188 (57%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A  Q+H  Y+++Q   GLVIVD HAAHER+++E+ +    +  I  Q+LL P  +   
Sbjct: 514 GFALGQVHGIYVLAQNAQGLVIVDMHAAHERILYEQFKTALANRAIAVQSLLLPVTMAAT 573

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             E     E  E L  LG       P  +AIR +PA+L   ++P L R ++ ++ +   +
Sbjct: 574 PVEIGTAEEERETLDALGFDLATLSPTTLAIRAVPALLRDADLPTLARAVLADLHEFGGS 633

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L 
Sbjct: 634 RVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLG 693

Query: 587 DIEKLFGR 594
           D+++LF R
Sbjct: 694 DLDRLFMR 701


>gi|88858902|ref|ZP_01133543.1| Enzyme in GATC methyl-directed mismatch repair [Pseudoalteromonas
           tunicata D2]
 gi|88819128|gb|EAR28942.1| Enzyme in GATC methyl-directed mismatch repair [Pseudoalteromonas
           tunicata D2]
          Length = 616

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 160/554 (28%), Positives = 263/554 (47%), Gaps = 44/554 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +++++  I  GG    +I DNG
Sbjct: 1   MNIEILPARLANQIAAGEVVERPASVVKELVENSLDAGATQIQIDIDRGGHKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSK+   DD  NI + GFRGEAL SI +VS LTL S+P   +  
Sbjct: 61  SGVYKDELTLALSRHATSKLKTLDDLENICSLGFRGEALASISSVSRLTLSSKPADQSDA 120

Query: 119 AQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +  +V+P A   GT +EV DLFF  PAR  FL++E+ E N I ++++R+A+
Sbjct: 121 WQAFAEGRDMAVTVKPTAHPNGTTIEVVDLFFNTPARRKFLRTEKTEFNHIDELLKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   V+ T         +           +RI+QV G++F++ A+ L    + +++ G+ 
Sbjct: 181 SRFDVAITLKHNGKIVRQYRPVMKKEEQVKRIAQVAGKEFLSQALFLESGDDGLSIFGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  +       Y ++NGR ++DK IL  IR A+ E+ P    P  VL L I+PRQVDV
Sbjct: 241 LPPGSSVEP---QYTYVNGRMMRDKLILHAIRQAFEESCPGIDVPAFVLYLTINPRQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI----SSFHQ------ 347
           NVHPAK  +RF    ++ +FI+Q++++A        S ++          S HQ      
Sbjct: 298 NVHPAKHEVRFHQARLVHDFILQAVKQAAQPNQCVVSEIVQCNEQVESGFSEHQSLFNDL 357

Query: 348 DNAPKTHLPKYATSLTNTQEK------------LFLQENRLSTNDLLPSDDPTYSEDNDP 395
             A +   P      + TQ K               Q+ + + N          ++  D 
Sbjct: 358 SQAHEFKAPPMGGFASQTQNKGSSQGYQPKPLVPQAQKQQQNVNAFYQGVAEQRAQHFDS 417

Query: 396 VEESEATHYQLGIACAQIH-----------QNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
           V E+  T +         H            + +I Q+    +   QH   E  + E   
Sbjct: 418 VSENTVTPHFELQNHTASHLLVTEMMVLQSGHCVIKQSDALQLSHLQHVLAEFWLEE--- 474

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
                 +I S+ LL P  + +       +      L  LG +  +     + ++ +P  +
Sbjct: 475 -ISQHAQIESKALLLPVRVAIDASAQIQLDTQLSWLTILGYEL-QLNTGFVMVKRLPPAV 532

Query: 505 SKKNIPQLLRDIID 518
              ++ +++  ++ 
Sbjct: 533 YAHDVNEVIDALLA 546


>gi|254253154|ref|ZP_04946472.1| DNA mismatch repair enzyme [Burkholderia dolosa AUO158]
 gi|124895763|gb|EAY69643.1| DNA mismatch repair enzyme [Burkholderia dolosa AUO158]
          Length = 503

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 203/359 (56%), Gaps = 9/359 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADVPHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +  ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           P+K  +RFR+   I  ++  ++Q+A+ +   ++    +    +      A         
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPQTTAGGHAAHLQPAAASPESFRSTP 374


>gi|160892635|ref|ZP_02073425.1| hypothetical protein CLOL250_00165 [Clostridium sp. L2-50]
 gi|156865676|gb|EDO59107.1| hypothetical protein CLOL250_00165 [Clostridium sp. L2-50]
          Length = 681

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 133/383 (34%), Positives = 211/383 (55%), Gaps = 9/383 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +  I++IAAGE+IERP   IKEL+ENS+DA ++ +   I  GG SF +ITDNG G
Sbjct: 2   IKLLDQYTIDKIAAGEVIERPGSVIKELVENSIDAGATAITIEIKEGGMSFIRITDNGCG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ EE+P+A  RH TSK+  +DD   I + GFRGEAL SI AV+ + L+++     TG +
Sbjct: 62  ISKEEVPVAFLRHATSKLQTADDLLKIASLGFRGEALSSIAAVAQVELITKQEDALTGTR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G K  S   +    GT + VR+LF+  PAR  F+K+   E + I D++ RMA+++P
Sbjct: 122 YQIHGGKEISNEEIGAPLGTTIVVRNLFYNTPARKKFMKTPATEGSYIYDLVCRMAMSHP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            VSF F    +++    F S NG   E I  + G D  NN +E+N  ++++ + GY   P
Sbjct: 182 DVSFKFIMNGTDKL---FTSGNGRLKEIIYHIYGRDITNNLLEINAANDQVKITGYLAKP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + +RGN +    ++N R ++   +   I  AY   + + ++P  V+  EIDP  +DVN+H
Sbjct: 239 SISRGNRSFEDYYVNQRYIKSNILTKAIEDAYRTFVMVHKFPFTVINFEIDPSLIDVNIH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM----ISSFHQDNAPKTHLP 356
           PAK  ++F N   + +F   S++KA+  K +  +    K M    ++    +  P+    
Sbjct: 299 PAKRELKFINEPDMYDFTYISVRKALLFKELIPTVTPGKDMRPETLAERKVEKRPEPFEA 358

Query: 357 KYATSLTNTQEKLFLQENRLSTN 379
               +    Q     Q+ + S  
Sbjct: 359 NRRAAELPPQPARPAQQKKPSMP 381



 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 124/305 (40%), Gaps = 7/305 (2%)

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           + P    ++  P  +           + +     K  N+ G + ++ +  + I  +    
Sbjct: 382 MQPANSGISAQPTPT-PSVTMENRSSSPVEIQYLKEDNQSGKNITNNMVAENIVPYLTQP 440

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                 P  A   TN   +   QE       +       + +     E  +         
Sbjct: 441 TKTALNPAEAGVQTNETSEQKKQEPITPEAKVKYEQMDMFEDKFLTPEAKKKH-----RI 495

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+ + Y + +  D   I+DQHAAHE++ FE++  ++ +     Q L+ P I+ L   E
Sbjct: 496 IGQLFKTYWLIEYEDKFFIMDQHAAHEKVKFEELMANYKNKTAIPQYLMPPAIVSLSGTE 555

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
              + E+ E    LG + E FG     +  +PA L   +  +L  + I E+ ++    T+
Sbjct: 556 SEFLRENLEFFQNLGFQIEGFGGKEYKLSAVPANLFGLDGRELFLEFIGELSENGQKQTI 615

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
              I   L+TMAC  +I+    +   E + L+ ++ K  N   C HGRPT I +  +++E
Sbjct: 616 DTFISK-LSTMACKAAIKGNTSISFKEADTLIDQLMKLENPYTCPHGRPTLISMTETELE 674

Query: 590 KLFGR 594
           K F R
Sbjct: 675 KKFKR 679


>gi|167586247|ref|ZP_02378635.1| DNA mismatch repair protein MutL [Burkholderia ubonensis Bu]
          Length = 440

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 131/394 (33%), Positives = 216/394 (54%), Gaps = 18/394 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++ +  V+  GG     ITD+G G
Sbjct: 26  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGANTLRIVLEEGGVKRISITDDGCG 85

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 86  IPPGELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMFITSRTADAAHATR 145

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 146 I---DAQTGVLAPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCVEMIRRAALARP 202

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++GE F    + L+E++  + + G  G+P
Sbjct: 203 DVAISVLHNGKAVEHWNATEPT----QRVAKILGEGFATAYLPLDERAGPLAVYGCAGLP 258

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 259 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 318

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV---------LSKKMISSFHQDNAP 351
           P+K  +RFR+   I  ++  ++Q+A+ +   ++             +    +SF      
Sbjct: 319 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAHIAAAPGPASFQSTPLG 378

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           +      + + T +Q   +L++ R++   L  + 
Sbjct: 379 QAASGGGSPAPTPSQGSTWLRQARMTQGTLPVAQ 412


>gi|238693283|sp|B4S1F7|MUTL_ALTMD RecName: Full=DNA mismatch repair protein mutL
          Length = 608

 Score =  353 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 201/379 (53%), Gaps = 5/379 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++++E  I  GG    +I DNG
Sbjct: 1   MPIQLLSPQLANQIAAGEVVERPASVVKELLENSLDAGATKIEIDIEKGGHKRIRIKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR       
Sbjct: 61  SGIEKNELQLALSRHATSKITTLDDLEQILSLGFRGEALASISSVSRLTLTSRTQAQTEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G +++ +++P A   GT ++V DLF+  PAR  FL++E+ E   I +VI+R+A+
Sbjct: 121 WQAYCEGREMAVNIQPAAHPVGTTIDVADLFYNTPARRKFLRTEKTEFQHIEEVIKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +YP VSF          +       G+   RI  V+G+ FI NAV ++     + +  + 
Sbjct: 181 SYPSVSFVLKHNDKVAKRFIAD-KEGSLTTRIGAVVGQKFIQNAVHIHAAYEGLQIDAWL 239

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G     R + +  + F+NGR ++DK I+  IR AY     +   P  V+ L +DP+ VDV
Sbjct: 240 GNEAMLRSSNDCQFSFVNGRGMRDKLIMHAIRQAYESVWAVIEQPSFVVYLTVDPKDVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF+   ++ +FI +++  A++      S             D         
Sbjct: 300 NVHPAKHEVRFQQGRLVHDFICKTVSDALHAMTDEASLTGMDNK-RHLESDFMSHEVEHD 358

Query: 358 YATSLTNTQEKLFLQENRL 376
           Y   L    E      N  
Sbjct: 359 YIRPLQTQAESSTRAFNEQ 377


>gi|325661607|ref|ZP_08150231.1| hypothetical protein HMPREF0490_00965 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472134|gb|EGC75348.1| hypothetical protein HMPREF0490_00965 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 691

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 140/414 (33%), Positives = 213/414 (51%), Gaps = 9/414 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+EN++DA+++ +   I  GG S  +I DN
Sbjct: 1   MPNIQVLDQVTIDKIAAGEVIERPASIVKELVENAIDAKATAITVEIKDGGISLIRIADN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  EE+P+A  RH TSKI   +D + I + GFRGEAL SI A++ + L ++  + + 
Sbjct: 61  GCGIPKEEVPLAFLRHSTSKIRSVEDLTGIASLGFRGEALSSIAAIAQVELRTKVKEADA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G Q  I G    S+  + M  GT   VR +FF  PAR  FLK+   E + ++++I R+A+
Sbjct: 121 GIQYRIEGGSEKSMEEIGMPDGTTFFVRQIFFNTPARRKFLKTPMTEASHVSELITRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P++SF F T    +      S NG   + I  + G D   N +E+N K+N + ++GY 
Sbjct: 181 SHPEISFQFLTNGQPKLH---TSGNGRLKDVIYHIYGRDITGNLLEINAKANGVAIRGYI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    +INGR V+   I   I  AY       +YP  VL   ID   +DV
Sbjct: 238 GKPLISRGNRNYENYYINGRYVKSSIIAKAIEDAYKGFTMQHKYPFTVLHFTIDGTDLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF     + NFI  +++ A+++K +     LS     S       K   P 
Sbjct: 298 NVHPTKMEVRFSKQQEVYNFIYNTLKDALSEKELIPRVELSVAEPVSQKSTFLEKAVSPS 357

Query: 358 YATSLTNTQ-EKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
               L + + EK+F++         +    +           E   A H Q   
Sbjct: 358 VPDVLPDKKNEKVFVEKLPQEARYAEAPSEEKNLDYFMKKMRERVTAYHNQSSQ 411



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
            +  ++   I  ++    +    F Q    +  + +      N QE    +  RL T   
Sbjct: 421 YRNQLSTDRIKEAAAYRAEQKKQFGQSEKVQEKIYRKEDKRENLQE-TSQEIARLQTPKE 479

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
              D      D   + +     Y       Q+ + Y I +  D + I+DQHAAHER+++E
Sbjct: 480 AEEDTQLNFFDQKLLSKEAKQEY---TLVGQVFETYWIVEYRDQMYIIDQHAAHERVLYE 536

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           +  +     + TSQ +  P +++L   E  L+ EH E+  ++G + E FG ++ A+R +P
Sbjct: 537 RTLKRMKEKQFTSQRISPPIVLNLSMQEEQLLSEHMENFTKIGFEIEPFGGDSYAVRAVP 596

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
             L       LL +++D + DS +T    D +   +A+M+C  +++   ++   E++ L+
Sbjct: 597 DNLFSIAKKDLLIEMLDSLSDSISTNLAPDIVLEKIASMSCKAAVKGNSRLSGREVDALI 656

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            E+ +  N   C HGRPT I +   ++EK F R
Sbjct: 657 GELLELDNPYHCPHGRPTIIAMTKRELEKKFKR 689


>gi|310642432|ref|YP_003947190.1| DNA mismatch repair protein mutl [Paenibacillus polymyxa SC2]
 gi|309247382|gb|ADO56949.1| DNA mismatch repair protein mutL [Paenibacillus polymyxa SC2]
          Length = 698

 Score =  353 bits (906), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 198/394 (50%), Gaps = 5/394 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E I NQIAAGE++ERP+  +KEL+EN++DA  +RV+  +  GG    ++TDNG 
Sbjct: 3   KIRVLDEHIANQIAAGEVVERPASVVKELVENAIDAGGTRVDVWVEEGGLQSIRVTDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A  RH TSKI    D   I + GFRGEALPSI AVS + L++    +    
Sbjct: 63  GIEPEDVETAFYRHATSKIGHGRDLFQITSLGFRGEALPSIAAVSKVELLTAAGDDGRAR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+      A   GT   VRDLF+  PARL ++K+ Q E   I+DV+ RMA+++
Sbjct: 123 KLVIEGGKLMLHENAAGRQGTDFTVRDLFYNTPARLKYMKTIQTELGHISDVLYRMALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT     +    +     NG+  + I+ + G     + + +  +S +  + GY   
Sbjct: 183 PEVAFTLRHNGN---TLLQTLGNGDLLQVIAAIYGTSAAKSMLMVEGESLDYRISGYVSR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P + R N N     +NGR V+   +   +  AY   +P+ RYP+ V+ L++ P  VDVNV
Sbjct: 240 PEWTRSNRNAISTVVNGRFVRSYGLNQALLKAYHTLLPINRYPLAVIQLDMHPSLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RF     +   +  S++  + ++ +   +V  +            + H  K  
Sbjct: 300 HPAKLEVRFSKEAELFQLVEDSVKAVLGQQVLIPKAVKREIGGKDSGSFVQEQFHFSKGN 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
           ++  +T                     P     +
Sbjct: 360 SAKVDTSTDNISSNEESKKFSYEHEQLPNRGSHS 393



 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 5/264 (1%)

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
           IST       + SS+ +          Y  +++   +      ++    + L ++  T  
Sbjct: 438 ISTGDHAETDVSSSYSEGIQETAASATYRPAVSPIADNTTKFTDQKPRQEHLNTEQLTAL 497

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                    E   +       Q H  Y+I+Q   GL ++DQHAAHER+ +E   + F + 
Sbjct: 498 SG----AAPEVPTFPELNLIGQHHGTYLIAQNDQGLYLIDQHAAHERVNYEFYYEKFGNP 553

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
           +  SQ LL P  ++    E   +        + G+  E FG     +   P  L K    
Sbjct: 554 ESVSQELLLPITLEFTPSETEKLKTRLHWFEQAGVYLEHFGGQTFRVSSYPYWLPKGEEA 613

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            ++ ++   +++      L    E      +C  SI++ +K+   + + LL  +      
Sbjct: 614 DVIEEMAGWVLEEKAID-LAKLREAASIMCSCRASIKANQKLTDRQASVLLERLAACKQP 672

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
             C HGRP  +     D+EKLF R
Sbjct: 673 YTCPHGRPIVVSFSTYDLEKLFKR 696


>gi|298246052|ref|ZP_06969858.1| DNA mismatch repair protein MutL [Ktedonobacter racemifer DSM
           44963]
 gi|297553533|gb|EFH87398.1| DNA mismatch repair protein MutL [Ktedonobacter racemifer DSM
           44963]
          Length = 755

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 17/491 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L+  +  +IAAGE++ERP+  +KELIENS+DA ++++   +  GG    ++TDNG
Sbjct: 1   MPIRQLAPDVAAKIAAGEVVERPASVVKELIENSIDAGATQIRVDLMNGGLQLIRVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ EE+P+A++RH TSK++  DD   I + GFRGEAL SI AV+ +TL+SR   +  G
Sbjct: 61  CGISPEELPLALERHATSKVASIDDLEQIRSLGFRGEALASIAAVAEVTLVSRARGSEQG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +Q+      IS V P A   GT + VR+LF  +PARL FLKS   E +    ++ + A+A
Sbjct: 121 SQVNAQSGHISDVTPAASPEGTTITVRNLFSAVPARLKFLKSRNTEISHCHHLLEQYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-------I 231
           YP++ FT ++      ++     +G     + QV G       VE++             
Sbjct: 181 YPEIRFTVASEGK---QIFSTPGDGKLFSVLVQVYGLQIAEQMVEVDGDDEHDASDGEYP 237

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            ++G+   P   +        F+N R V  + + + +  AY   +  GR+P+ V+ ++ID
Sbjct: 238 IVKGFVSRPACYKSTRQHISFFVNRRWVMSRMLTTAVEGAYHSLLLSGRHPLAVINIQID 297

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P  +DVNVHPAK+ IRF     +   I+++ +KA+ ++              +  Q +A 
Sbjct: 298 PSFLDVNVHPAKTEIRFLKERRVFAAILRAARKALLQEPEMPQWKSKSSEPRASSQPDAY 357

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV---EESEATHYQLGI 408
               P +   L   +E +   E              T   D+  +   EE   T      
Sbjct: 358 DQE-PSFEGRLDLDEEAVQKDEQEAREAGKPQQRQSTIPGDSPWITFTEEEHGTRPPGHA 416

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              Q H           L  VD     ER     +        +T  T L  +   L   
Sbjct: 417 RLWQSHLGVTDKAKGSRLKAVDTTVEVERSPTGTLHAQAEQVSVTLDTSLEEDDP-LSML 475

Query: 469 ECALIMEHDED 479
             A  +E   +
Sbjct: 476 PPAAPVEKRPE 486



 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 99/201 (49%)

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             ++ ++   +       Q+ Q+Y++++  DG+ ++DQHAAHER++ E+M     S +  
Sbjct: 554 HSIDPNQPRKFPRLRVVGQLSQSYVVTEGPDGMYLIDQHAAHERIVLERMVASLKSRETI 613

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
           SQ LLTP  + L   E   + EH E L R+G + E      + +R +P +L K+     L
Sbjct: 614 SQLLLTPMHLTLAPVEIEAVEEHGEQLRRIGFELEVVDGKTVEVRAVPTVLVKRLDSVSL 673

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
             ++ E+         +   E  LA +AC  +I+    +   EM  +L ++E+      C
Sbjct: 674 HALLVELTAEDQLGHTETWEERALANVACKAAIKQNYFLAMSEMREMLEQLEQVKAPFSC 733

Query: 574 NHGRPTFIKLKLSDIEKLFGR 594
            HGRPT +   L+++   F R
Sbjct: 734 CHGRPTMVHFSLAELAHEFER 754


>gi|160938811|ref|ZP_02086162.1| hypothetical protein CLOBOL_03705 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437774|gb|EDP15534.1| hypothetical protein CLOBOL_03705 [Clostridium bolteae ATCC
           BAA-613]
          Length = 763

 Score =  353 bits (905), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 195/379 (51%), Gaps = 7/379 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  IN+IAAGE+IERP+  +KEL+EN++DA ++ V   I  GG S  ++TDNG+G
Sbjct: 4   ITVLDQSTINKIAAGEVIERPASVVKELLENAVDAHATAVTVEIKDGGCSMIRVTDNGWG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  EEIP+A  RH TSKI   +D   I + GFRGEAL SI AV+ + L+++   + TG++
Sbjct: 64  IPKEEIPLAFLRHATSKIKTVEDLFTISSLGFRGEALASIAAVAQVELITKTGDSLTGSR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G     +  +    GT +  R+LF+  PAR  FLK+   E   +  ++ ++A+++P
Sbjct: 124 YQIEGGVEKGLEEIGAPDGTTIIARNLFYNTPARKKFLKTPMTEGAHVAALVEKIALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +S  F     N+    + S N N  + I  V G +   N + +    + IT+ G+TG P
Sbjct: 184 DISIRFIQNNQNKL---YTSGNHNLKDLIYTVFGREIAGNLLPVEINEDWITVTGFTGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N    FINGR ++   I   I  AY   +   +YP  +L   I+P  +DVNVH
Sbjct: 241 VIARSNRNYENYFINGRYIKSSIISKAIEEAYKPYMMQHKYPFTMLHFHIEPDTLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RF +   + + +++++  A+  K +     L  K      Q    +   P+   
Sbjct: 301 PTKMELRFADGEKVYHAVLRAVSNALAHKELIPQVSLEAKQEKEARQ--LAEKLAPRPEP 358

Query: 361 SLTNTQEKLFLQENRLSTN 379
                +E L  + +     
Sbjct: 359 FEVRRRENLSQKTSGSPVQ 377



 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+   Y + +  + L I+DQHAAHE++++E   +   + +   Q +  P I+ L   E
Sbjct: 578 IGQLFDTYWMVEYNEQLFIIDQHAAHEKVLYENTIKSLKTRQYDMQMVDPPIILTLNMNE 637

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             L+ ++ +    +G + E FG    A+R +PA L      +LL ++ID + +  + +  
Sbjct: 638 ELLLEKYMDYFTGIGFEIEPFGGREYAVRGVPANLFSIAKKELLTEMIDGLSEDMSVHN- 696

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            D I   +A+M+C  +++    M   E N L+ ++    N   C HGRPT I +   ++E
Sbjct: 697 PDIIYEKVASMSCKAAVKGHHTMSFQEANVLIDQLLDLENPYACPHGRPTIISMSKYELE 756

Query: 590 KLFGR 594
           K F R
Sbjct: 757 KKFKR 761


>gi|166031821|ref|ZP_02234650.1| hypothetical protein DORFOR_01522 [Dorea formicigenerans ATCC
           27755]
 gi|166028274|gb|EDR47031.1| hypothetical protein DORFOR_01522 [Dorea formicigenerans ATCC
           27755]
          Length = 698

 Score =  352 bits (904), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 130/398 (32%), Positives = 206/398 (51%), Gaps = 7/398 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L +  I++IAAGE+IERP+  +KEL EN++DA ++ V   I  GG +F +I DNG 
Sbjct: 3   KIQVLDQITIDKIAAGEVIERPASVVKELAENAIDAGATAVTVEIKEGGITFMRIADNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A  RH TSKI   +D ++I + GFRGEAL SI AVS + L+++  + + G 
Sbjct: 63  GIDKEDVRAAFLRHSTSKIRSAEDLAHISSLGFRGEALSSIAAVSQVELLTKTKEADFGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I+G K  S+       GT   +R LF+  PAR  FLK+   E + + D++ R+A+++
Sbjct: 123 RYKIAGGKEESLEDAGAPDGTTFLIRQLFYNTPARRKFLKTAMTEASHVGDLVTRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF F      +      S NGN  + I  + G +  +N +E++ +   I + GY G 
Sbjct: 183 PEVSFRFINNGQVKLH---TSGNGNLKDVIYHIYGREIASNLIEVDFERKGIHITGYLGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    F++GR ++   I   I   Y +     +YP VVL L++D   VDVNV
Sbjct: 240 PLISRGNRNFENYFVDGRYIKSSIISKAIEDGYKDFTMQHKYPFVVLYLDVDTEHVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD--NAPKTHLPK 357
           HP K  +RF N   I N +  ++   ++++ +     L    I    +D  +       +
Sbjct: 300 HPTKMDVRFNNQQEIYNTLFAAVDDGLHERELIPEVTLDDIKIPEEPKDCKSNFPEEPKE 359

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
               L    E    ++ R S       D+      N+ 
Sbjct: 360 SKMDLPKKSEAEHTEKLRTSLQSPQNEDEKLQYFMNEM 397



 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 4/265 (1%)

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
               S K   +    N+ K      A S   +Q+ +  Q ++++      +      +  
Sbjct: 432 PVPYSYKPQKNIPAPNSYKPQRNVQAQSSYKSQQNVQTQGSQIAEMPNYTARQVPAEKPQ 491

Query: 394 --DPVEES--EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
             +  EE   E           Q+   Y + +  D L I+DQHAAHER+++E+  +   +
Sbjct: 492 QLNFFEEKLLEPQAKAEHKIIGQVFDTYWLVEFHDNLYIIDQHAAHERVLYEQTLKGMKT 551

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
            + TSQ +  P I++L   E  L+  + +   R+G + E FG ++ A+R +P  L     
Sbjct: 552 REFTSQLISPPIILNLSMQEAELLRLYMDQFTRIGFEIEEFGQDSYAVRAVPDNLFSIAK 611

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +LL ++ID + D        + I+  +A+M+C  +++   ++ + E++ L+ E+    N
Sbjct: 612 KELLMEMIDSLSDEINRNAPSNLIDEKIASMSCKAAVKGNMRLSAAEVDTLITELLSLDN 671

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRPT I +   ++EK F R
Sbjct: 672 PYHCPHGRPTIIAMSRRELEKKFKR 696


>gi|170288719|ref|YP_001738957.1| DNA mismatch repair protein MutL [Thermotoga sp. RQ2]
 gi|170176222|gb|ACB09274.1| DNA mismatch repair protein MutL [Thermotoga sp. RQ2]
          Length = 516

 Score =  352 bits (904), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 154/595 (25%), Positives = 273/595 (45%), Gaps = 88/595 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L E ++ +IAAGE+I  PS  +KEL+ENSLDA++ R+   I  GGK+  +++DNG 
Sbjct: 8   RIKRLPESLVRKIAAGEVIHNPSFVLKELVENSLDAQADRIVVEIENGGKNMVRVSDNGI 67

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT EE  +A++ + TSKI   +D   I T+GFRGEAL SI  VS   ++++  ++    
Sbjct: 68  GMTREEALLAIEPYTTSKIESEEDLHRIRTYGFRGEALASIVQVSRTKIVTKTEKDALAT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ I+G K+  +     + GT VEVRDLFF +P R   LKS  +E  +  ++  R  +  
Sbjct: 128 QLMIAGGKVEEISETHRDTGTTVEVRDLFFNLPVRRKSLKSSAIELRMCREMFERFVLVR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F F++       ++      N  ER + +I ED     +   E+ + + ++G    
Sbjct: 188 NDVDFVFTSDGKI---VHSFPRTQNIFER-AILILEDLRKGYITFEEELSGLRIKGIVSS 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R +    Y ++NGR V  + +   +   Y   +P   YPV VL +E++P ++DVN+
Sbjct: 244 REVTRSSRTGEYFYVNGRFVVSEELHEVLMKVYD--LPKRSYPVAVLFIEVNPEELDVNI 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  ++F N   ++  + +++++ + +K   +                          
Sbjct: 302 HPSKIVVKFLNEEKVKKSLEETLKRNLARKWYRS-------------------------- 335

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                      +    +S++ L  ++ P+Y                       +   Y +
Sbjct: 336 -----------VAYEEISSHALSVAESPSYRW-------------------FLVKGKYAV 365

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  DGL+ VD HA HER I+E++    +  K   +  +T            L  E  + 
Sbjct: 366 VEVEDGLLFVDLHALHERTIYEEILSKKSWRKRRVKRNIT----------VVLSREEKQK 415

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G   +     A+ + EIP  L++  + +  RD             + ++++  +A 
Sbjct: 416 LEEYGFSFQGE-EGALKVIEIPEFLTEDVVEEFFRDF-----------PVDEKLKERIAL 463

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  + +SG      E+   L ++       +C HGRP   K+   D+++ F R
Sbjct: 464 AACKLATKSGEF--DEEIASKLLDVFFKKRFERCPHGRPISFKISYEDMDRFFER 516


>gi|240146293|ref|ZP_04744894.1| DNA mismatch repair protein MutL [Roseburia intestinalis L1-82]
 gi|257201597|gb|EEU99881.1| DNA mismatch repair protein MutL [Roseburia intestinalis L1-82]
          Length = 686

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 194/362 (53%), Gaps = 6/362 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  LS++ I++IAAGE++ERPS  +KEL+EN++DA+++ V   I  GG SF +ITDN
Sbjct: 1   MPEITLLSQETIDKIAAGEVVERPSSVVKELVENAIDAKATAVTVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+A  RH TSKI   +D  +I + GFRGEAL SI AVS + L+++     T
Sbjct: 61  GCGIERAQVPLAFLRHSTSKIKSVEDLMSITSLGFRGEALSSIAAVSQVELITKTYGELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K      +    GT   VR+LF+  PAR  FLK+ Q E N I D++ R+A+
Sbjct: 121 GTRYVIEGSKEKENEEIGAPEGTTFIVRNLFYNTPARRKFLKTAQTEGNYINDLMERLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P VSF F      +      S N    + I  + G D  +  +E++ K+    ++G+ 
Sbjct: 181 SHPGVSFKFINNGQTKMH---TSGNSREKDMIYHIYGRDITSGLLEIDHKNEYFHVKGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    FINGR ++   +  +I  AY   +   +YP  VL   +D   +DV
Sbjct: 238 GKPLISRGNRNFENYFINGRYIKSALLSKSIEEAYKGFLMQHQYPFCVLYFSMDTDLLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF N   I   + + I+ A+  K       + ++ I       AP     +
Sbjct: 298 NVHPTKMELRFSNNEAIYKTLFEIIRGALTHKDFIPEVPVQEEKIRKRENIKAPLPEPFE 357

Query: 358 YA 359
             
Sbjct: 358 RR 359



 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 156/451 (34%), Gaps = 25/451 (5%)

Query: 156 NFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
              ++  +    I   +   +I      F         + + + S + +  +        
Sbjct: 247 RNFENYFINGRYIKSALLSKSIEEAYKGFLMQH--QYPFCVLYFSMDTDLLDVNVHPTKM 304

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
           +   +  E   K+    ++G      F      Q         ++        R      
Sbjct: 305 ELRFSNNEAIYKTLFEIIRGALTHKDFIPEVPVQEEKIRKRENIKAPLPEPFERRGVEMV 364

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
              GR+          P+ +         +   +    ++  I      A  K+     +
Sbjct: 365 RSGGRF---------QPQDIQQGTGGQSGFAASKENEDVQTTI-PMQSAAPQKESAPPEN 414

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
           +     +    +    +    + + S T T  K   Q  +         ++   +     
Sbjct: 415 LSVFNSLLPKKETAVTEQSADRVSESNTYTVSKPVPQPIQAGKTTASLPEETAAALPESK 474

Query: 396 VEESEA------------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           V   +                +      Q+   Y + +  D L I+DQHAAHE++++EK 
Sbjct: 475 VTYEQQELAAVSEGFLTKDAKKKHKIIGQLFDTYWMVEYEDKLFIIDQHAAHEKVLYEKT 534

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
            +       +SQTL  P I+ L   E  ++ ++ E +   G + E FG    A+  IPA 
Sbjct: 535 MKKVREKTFSSQTLSPPIILTLSIEEIEMLEKYREQIDAFGYEIEPFGGKEYAVTAIPAD 594

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
            +  +   +  +++D+  + +   +    +E + A+M+C  +I+  + +   E  RL+ E
Sbjct: 595 FTGIDTKTMFLEMLDDFANINENDSPNAIMEKV-ASMSCKAAIKGNQHISRPEAERLIDE 653

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  N   C HGRPT I +   +IEK F R
Sbjct: 654 LLELENPYNCPHGRPTIISMTKYEIEKKFKR 684


>gi|317056654|ref|YP_004105121.1| DNA mismatch repair protein MutL [Ruminococcus albus 7]
 gi|315448923|gb|ADU22487.1| DNA mismatch repair protein MutL [Ruminococcus albus 7]
          Length = 693

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 126/401 (31%), Positives = 211/401 (52%), Gaps = 12/401 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS ++   IAAGE+I+RP+  IKEL+EN++DA ++ +   I  GG+++ ++TDNG G
Sbjct: 4   IRVLSREVSELIAAGEVIDRPASVIKELLENAIDAGATVITVEIKNGGRTYMRVTDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++P+A  RH TSKIS  DD  +I T GFRGEAL SI AV+ + +M++  +++ G  
Sbjct: 64  LAPDDLPIAFLRHATSKISQKDDLDSIMTLGFRGEALASICAVAKVDVMTKRREDSYGTH 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
            AI G +           GT   VRD+F+ +PARL FLK +  E N + D++ ++ +++P
Sbjct: 124 YAIEGAEEKISEQCGCPDGTTFIVRDIFYNVPARLKFLKKDSSEANHVADLVTKLTLSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF       N       + +G     +  V G +F N+ +E++     I + GYT  P
Sbjct: 184 DISFKLIRDNKNE---IITAGDGKIYSSVYSVYGREFANSLIEVDHTWQGIHVYGYTVKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              + N      F+N R V+ K   + I  AY   I +G++P  VL +++ P  +DVNVH
Sbjct: 241 LSAKPNRKFQNFFVNSRFVRSKACAAAIEEAYRNNIMVGKFPACVLYIDVPPNTIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RF +  +I   +  +++ A+ +K      VL+     + H+       L  +  
Sbjct: 301 PTKIEVRFSDEKLIHEAVFFAVKNALMEKDEPGELVLNDSRNFTDHE-------LFDFPP 353

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
              + Q +  ++E  L   D + +       +N  V  +E 
Sbjct: 354 EDKSVQLEFSVEEETLPEADKILNQMSAVESENRSVNATEP 394



 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 127/311 (40%), Gaps = 15/311 (4%)

Query: 296 DVNVHPAKSYIRFRNPTIIRN---------FIIQSIQKAINKKGISTSSVLSKKMISSFH 346
             N     +     +   +            I +     I++    +   L    ++   
Sbjct: 384 SENRSVNATEPVVDDERPLPEPPEKRPFEPKITKVENIPIDEDKRKSGEDLFLAELAEPS 443

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQE--NRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
               PK         +    +++ L E       +D     +      +   E  +    
Sbjct: 444 PVPVPKIQEKITVEEINKVLQEIPLPEVPAEEEKDDDFHYINDRSFIRSVVREVKKEPEK 503

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
              I   ++ + Y+++Q  D ++++D+HAAHER IFEK++ D   +++ +Q LL P ++ 
Sbjct: 504 PKPIVVGELFRTYVVAQVGDEMLLMDKHAAHERYIFEKIKNDI--SELETQMLLEPVMVM 561

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK-KNIPQLLRDIIDEIIDS 523
           L   E   +  + + L RLG + E      +A++ +P IL   +N   ++ ++    I  
Sbjct: 562 LSYDEFDALAANLDKLSRLGFEIEPDVAPTVAVKGVPIILGDSENPTDIVTELARNFIQC 621

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                L+   +++  ++AC  +I++     +IE+  LL  +  N N   C HGRP  I L
Sbjct: 622 RNNPQLE-VFDDLYHSIACKAAIKANDNNSTIELQALLNAVYGNENIRYCPHGRPVIITL 680

Query: 584 KLSDIEKLFGR 594
              DIEK F R
Sbjct: 681 SKKDIEKQFRR 691


>gi|291550403|emb|CBL26665.1| DNA mismatch repair protein MutL [Ruminococcus torques L2-14]
          Length = 708

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/432 (29%), Positives = 214/432 (49%), Gaps = 11/432 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L +  I++IAAGE+IERP+  +KEL+EN++DA S+ V+  I  GG SF +ITDN
Sbjct: 1   MPHIHVLDQITIDKIAAGEVIERPASIVKELVENAIDAGSTSVKIEIKDGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+  A  RH TSKI   +D S+I + GFRGEAL SI AV+   L+++      
Sbjct: 61  GCGIPQDEVQRAFLRHSTSKIETVEDLSHIASLGFRGEALSSIAAVTRTELITKTADAEF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S+       GT   V  LF+ +PAR  FLK+   E   + D++  +A+
Sbjct: 121 GTRYVIEGGKEVSLEDTGAPNGTTFLVHQLFYNVPARRKFLKTPMTEAGHVQDLLMHLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+V+F F      + +    S NG   + I  V G D   N +E++ + N I + G+ 
Sbjct: 181 SHPEVAFQFLNNGQEKLR---TSGNGKLKDVIYNVYGRDVAANLIEIDYEKNGIHITGFL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    F+NGR V+   I  ++  AY + +   ++P  VL   +    VD+
Sbjct: 238 GKPIITRGNRNFENFFVNGRYVKSAMISKSVEDAYRDFVMQHKFPFAVLHFHLSGENVDI 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF     + N + +++ + + +  +   + +   + S+ +     +     
Sbjct: 298 NVHPTKMELRFSRQQEVYNTVFEAVHRTLLEPELIQKAEVPDPVESNENMAERSERVKKT 357

Query: 358 YATSLTNTQE---KLFLQENRLSTNDLLPSD--DPTYSEDNDPVEESEATHYQLGIACAQ 412
           + ++ T  +E     FL   R     +  ++    +     D V++ +    ++      
Sbjct: 358 FTSASTKDKEDTGSPFLLRPRKENEKVTAAELIKESRETVKDDVQDEDYFIRKMKERVLS 417

Query: 413 IHQNYIISQTTD 424
            H     ++  D
Sbjct: 418 YHNRSSSAEVAD 429



 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 131/255 (51%), Gaps = 8/255 (3%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTN---DLLPSDDPTYSEDNDPVEESEATHY 404
           + A KT  P+ A ++  ++  + +Q    ST+   D   +D  +  E+   ++  E    
Sbjct: 452 EAADKTVAPETAATVQKSKPAIEMQTATTSTDAASDCEITDAKSEPENGTQMDLFEENFL 511

Query: 405 QLGIA-----CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           +  I        Q+   Y + +  D L I+DQHAAHER+++E+  ++  S + TSQ L  
Sbjct: 512 KRDIRAEYKLIGQVFDTYWLVEFKDNLYIIDQHAAHERVLYERTLREMKSREFTSQYLSP 571

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P I+ L   E  L+ E+ +   R+G + E FG    A+R +P  L      +LL ++ID+
Sbjct: 572 PIILSLSMQEAQLLNENMDRFSRIGFEIEPFGGEEYAVRAVPDNLFSIAKKELLMEMIDD 631

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           + +  +T    + I+  +A+++C  +++   ++ + E+++L+ E+    N   C HGRPT
Sbjct: 632 LTEGLSTSMTPELIDEKVASLSCKAAVKGNNRLSAQEVDKLIGELLTLDNPYHCPHGRPT 691

Query: 580 FIKLKLSDIEKLFGR 594
            I +   D+EK F R
Sbjct: 692 IIAMTKRDLEKKFKR 706


>gi|6018218|gb|AAF01798.1|AF170912_2 MutL homolog [Caulobacter crescentus CB15]
          Length = 526

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 185/525 (35%), Positives = 291/525 (55%), Gaps = 36/525 (6%)

Query: 106 LTLMSRPPQNNTGAQIAISGEKISSVRPV--AMNPGTIVEVRDLFFTIPARLNFLKSEQV 163
           L + SR         I + G ++  V P       G  +EVRDLF+  PARL F+KSE+ 
Sbjct: 1   LQISSRAKGAKDAFSILVEGGQVGEVAPAAFPGPHGARIEVRDLFYATPARLKFMKSERA 60

Query: 164 ETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAV 222
           E   IT+ I+R A+A   V F+         ++            R++ V+G +F  NA+
Sbjct: 61  EALAITEEIKRQAMANESVGFSLDIDGRRVLRLPPEHPGPQGRLARLAAVLGREFQENAL 120

Query: 223 ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP 282
           E+++  + + L G+ G+PT+NRGNA   Y+F+NGR V+D+ +   +R AYA+ +   R+P
Sbjct: 121 EIDQTRDGVRLSGFAGLPTYNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHP 180

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI 342
              L + ++  +VDVNVHPAK+ +RFR+P ++R  I+ +++ A+   G   S+ ++ + +
Sbjct: 181 TAALYVTLETTEVDVNVHPAKAEVRFRDPALVRGLIVGALRHALAGAGHRASTTVAAQAL 240

Query: 343 SSFHQDNAPKT-HLPKYATSLTNTQEKLFLQENRLSTNDLLPS----------------- 384
            S     +P   + P+Y    +      + +                             
Sbjct: 241 DSIRAQQSPFPGYQPQYQPGPSPAGFSAWREGGWTPPTQRPMDLPGLNEVSARVEPSYGG 300

Query: 385 ---------------DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                          +D   ++        +   Y LG A AQ+H+ YI++QT DG+VIV
Sbjct: 301 DLAGVVREAYAAAAFEDRPPTDYPGATAPFDPVDYPLGAARAQVHETYIVAQTRDGMVIV 360

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHAAHERL++E+M+ +  S  +T QTLL PE++DL   E   ++   E+L  LG+  E 
Sbjct: 361 DQHAAHERLVYERMKGEMASGGVTRQTLLLPEVVDLDPAEAERVVARAEELAGLGLVLES 420

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FGP A+ +RE PA+L K +   L+RDI D++ ++     L++R+E + +TMAC+GS+R+G
Sbjct: 421 FGPGAVLVRETPALLGKTDAAALVRDIADDLAENGQALALKERLEEVCSTMACHGSVRAG 480

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R++   EMN LLREME  P+S QCNHGRPT+++LKL+DIEKLFGR
Sbjct: 481 RRLNGAEMNALLREMEATPHSGQCNHGRPTYVELKLADIEKLFGR 525


>gi|291536170|emb|CBL09282.1| DNA mismatch repair protein MutL [Roseburia intestinalis M50/1]
 gi|291538967|emb|CBL12078.1| DNA mismatch repair protein MutL [Roseburia intestinalis XB6B4]
          Length = 686

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 194/362 (53%), Gaps = 6/362 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  LS++ I++IAAGE++ERPS  +KEL+EN++DA+++ V   I  GG SF +ITDN
Sbjct: 1   MPEITLLSQETIDKIAAGEVVERPSSVVKELVENAIDAKATAVTVEIKEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+A  RH TSKI   +D  +I + GFRGEAL SI AVS + L+++     T
Sbjct: 61  GCGIERAQVPLAFLRHSTSKIKSVEDLMSITSLGFRGEALSSIAAVSQVELITKTYGELT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K      +    GT   VR+LF+  PAR  FLK+ Q E N I D++ R+A+
Sbjct: 121 GTRYVIEGSKEKENEEIGAPEGTTFIVRNLFYNTPARRKFLKTAQTEGNYINDLMERLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P VSF F      +      S N    + I  + G D  +  +E++ K+    ++G+ 
Sbjct: 181 SHPGVSFKFINNGQTKMH---TSGNSREKDMIYHIYGRDITSGLLEIDHKNEYFHVKGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    FINGR ++   +  +I  AY   +   +YP  VL   +D   +DV
Sbjct: 238 GKPLISRGNRNFENYFINGRYIKSALLSKSIEEAYKGFLMQHQYPFCVLYFSMDTDLLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF N   I   + + I+ A+  K       + ++ I       AP     +
Sbjct: 298 NVHPTKMELRFSNNEAIYKTLFEIIRGALTHKDFIPEVPVQEEKIRKRENIKAPLPEPFE 357

Query: 358 YA 359
             
Sbjct: 358 RR 359



 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 156/451 (34%), Gaps = 25/451 (5%)

Query: 156 NFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
              ++  +    I   +   +I      F         + + + S + +  +        
Sbjct: 247 RNFENYFINGRYIKSALLSKSIEEAYKGFLMQH--QYPFCVLYFSMDTDLLDVNVHPTKM 304

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
           +   +  E   K+    ++G      F      Q         ++        R      
Sbjct: 305 ELRFSNNEAIYKTLFEIIRGALTHKDFIPEVPVQEEKIRKRENIKAPLPEPFERRGVEMV 364

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
              GR+          P+ +         +   +    ++  I      A  K+     +
Sbjct: 365 RSGGRF---------QPQDIQQGTDGQSGFAASKENEDVQTTI-PMQSAAPQKESAPPEN 414

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
           +     +    +    +    + + S T T  K   Q  +         ++   +     
Sbjct: 415 LSVFNSLLPKKETAVTEQSADRVSESNTYTVSKPVPQPIQADKTTASLPEETAAALPESK 474

Query: 396 VEESEA------------THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           V   +                +      Q+   Y + +  D L I+DQHAAHE++++EK 
Sbjct: 475 VTYEQQELAAVSEGFLTKDAKKKHKIIGQLFDTYWMVEYEDKLFIIDQHAAHEKVLYEKT 534

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
            +       +SQTL  P I+ L   E  ++ ++ E +   G + E FG    A+  IPA 
Sbjct: 535 MKKVREKTFSSQTLSPPIILTLSIEEIEMLEKYREQIDAFGYEIEPFGGKEYAVTAIPAD 594

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
            +  +   +  +++D+  + +   +    +E + A+M+C  +I+  + +   E  RL+ E
Sbjct: 595 FTGIDTKTMFLEMLDDFANINENDSPNAIMEKV-ASMSCKAAIKGNQHISRPEAERLIDE 653

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  N   C HGRPT I +   +IEK F R
Sbjct: 654 LLELENPYNCPHGRPTIISMTKYEIEKKFKR 684


>gi|168699267|ref|ZP_02731544.1| DNA mismatch repair protein [Gemmata obscuriglobus UQM 2246]
          Length = 731

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 201/364 (55%), Gaps = 6/364 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L   ++N+IAAGE+IERP+  +KEL+ENS+DA ++R++  +  GG    ++ D+G 
Sbjct: 3   RIRQLPPDVVNKIAAGEVIERPASVVKELLENSIDAGATRIDIDLDAGGTELIRVVDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  +H TSK+  +DD   I T GFRGEAL SI  V  +TL SR     +G 
Sbjct: 63  GIDPDDLALAFSQHATSKLTTADDLFQIRTMGFRGEALASISGVGQITLQSRTHTAASGC 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  IS  RP    PGT +EVR LF+ +P R  FLKS   E   + + + R+A+A+
Sbjct: 123 EVKCDGNGISDPRPWNGAPGTRMEVRHLFYNVPVRKKFLKSVATELGHVCETVTRLALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  T        Y +     +    +RI+     +  +   E++     + L+GY   
Sbjct: 183 PALHITLRHNNRLVYDI---PGSAGLLDRIALFFTGEVRDALYEIDSGDGPMRLRGYIAD 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN+   Y+F+NGR  +D+ +   ++ +Y   +  GRY +  L L + P ++DVNV
Sbjct: 240 PKCDRGNSKLQYLFVNGRWFRDRSLSHALQESYRGLLMAGRYTIGFLFLTLPPDKLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM-ISSFHQDNAPKTHLPKY 358
           HP KS +RF+  +++ + +  +I++ + K+ +     + + +   +  ++  PK   P  
Sbjct: 300 HPTKSEVRFQENSLVYSLVRATIKQRLLKENLIPHLTVPQGIEDGALAEEPEPKIETPSL 359

Query: 359 ATSL 362
            TS 
Sbjct: 360 FTSP 363



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/259 (27%), Positives = 127/259 (49%), Gaps = 3/259 (1%)

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN---RLSTNDLLPSDDPTYSEDNDP 395
            +     + D AP     + A+       + F+      ++S  +   S           
Sbjct: 472 DRSEEEENTDIAPSEFDAQIASEAPPAPARQFVSAPPMEQISPGEPQESTPAPAPPAPAS 531

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                A       +  Q+H +Y++ +T DG++++DQHA HER++FE++R+   + ++  Q
Sbjct: 532 TAPPVAGAPAGSSSAIQLHDSYLVLETPDGMLVIDQHALHERILFEQLRRRIRAGQLEVQ 591

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PE +DL   + AL++E  + L  LG+    FG N I +   P +L +K    +LR 
Sbjct: 592 RLLIPEPVDLPAEQAALVLECADALAELGLDVSDFGGNTILLSSYPTLLGRKPPHVILRG 651

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           +ID I+      T +  +  ++ATMAC  ++++G K+   E+  LLR  E   +S  C H
Sbjct: 652 VIDHIVTQERAPTKEALLHLLMATMACKAAVKAGDKLSPEEITYLLRLREMAEDSHHCPH 711

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT +    ++++K F R
Sbjct: 712 GRPTSLLFSRAELDKQFRR 730


>gi|312795202|ref|YP_004028124.1| DNA mismatch repair protein mutL [Burkholderia rhizoxinica HKI 454]
 gi|312166977|emb|CBW73980.1| DNA mismatch repair protein mutL [Burkholderia rhizoxinica HKI 454]
          Length = 844

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 132/361 (36%), Positives = 203/361 (56%), Gaps = 13/361 (3%)

Query: 1   MK---IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQIT 57
           M    I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA ++ +   +  GG     I 
Sbjct: 136 MPTRAIQPLPDQLISQIAAGEVVERPASVVKELVENALDAGATALRITLDAGGVKRIMIA 195

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           D+G G+ ++E+P+A+ RH TSKI    +  ++ T GFRGEAL SI AV+  ++ SR    
Sbjct: 196 DDGCGIEADELPLALMRHATSKIRSLAELESVCTLGFRGEALASIAAVAQTSITSRTADA 255

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
               +I     +  ++ P A   GT +EVRDL+F+ PAR  FLKSEQ E     +VIRR 
Sbjct: 256 PHATRI---DAQTGALSPAAGGVGTTIEVRDLYFSTPARRKFLKSEQTEFGHCLEVIRRA 312

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A++ P V+F+           N  S      + +    GE F  + + L E +  I + G
Sbjct: 313 ALSRPDVAFSVLHNGRAVEHWNAASAAARTAKIL----GEAFATSHLPLEEAAGPIAIYG 368

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           + G+PT +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  V
Sbjct: 369 FAGLPTASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPAYVLFLDLPPEGV 428

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHP+K  +RFR+   I  F+  ++Q+A+ +     S   +    +++     P T  
Sbjct: 429 DVNVHPSKIEVRFRDSRSIHQFVFHAVQRALARHA-GASPDTTAAGHAAYLTPTVPDTAS 487

Query: 356 P 356
           P
Sbjct: 488 P 488



 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 72/271 (26%), Positives = 126/271 (46%)

Query: 324 KAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
            A+     ++++       ++    +       +   S T+             T+    
Sbjct: 572 PALPTHDDASAAPSPASGPAADQASSPMDAESTQSGPSATSEAHPASATNEAQPTSATHA 631

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
               + +             + LG A  Q+H  Y+++Q T GLV+VD HAAHER+++E+ 
Sbjct: 632 VQPASAANGPAAASAQPLDEHPLGFALGQLHGIYVLAQNTRGLVLVDMHAAHERILYEQF 691

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +       I  Q LL P  +     E  +  E  E L  LG       P  +AIR +PA+
Sbjct: 692 KHALAQRHIAVQPLLIPVTMQADAVEIGVAGEERETLDALGFDIASLSPTTLAIRAVPAL 751

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           L   ++  L R ++ ++     +  L +    +L T+AC+ ++R+ R++   EMN LLR+
Sbjct: 752 LKDADLVSLARAVLADLHAYGGSRVLTEHQHELLGTLACHHAVRANRRLSIDEMNALLRQ 811

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ME    + QCNHGRPT+ +L L+++++LF R
Sbjct: 812 MEATERADQCNHGRPTWFQLTLNELDRLFMR 842


>gi|253577128|ref|ZP_04854449.1| DNA mismatch repair protein MutL [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843510|gb|EES71537.1| DNA mismatch repair protein MutL [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 401

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 5/337 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E I NQIAAGE++ERP+  +KEL+EN++DA ++++E  +  GG    ++TDNG 
Sbjct: 42  KIAILDEHIANQIAAGEVVERPASVVKELVENAIDAGATKIEVAVEEGGMQLIRVTDNGS 101

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+   A  RH TSKI+   D   I + GFRGEALPSI AV+ + L+S    +  G 
Sbjct: 102 GIEPEDCETAFYRHATSKITSGRDLFQIRSLGFRGEALPSIAAVAKVRLVSSSNDSGLGR 161

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I G  +     +A   GT + V++LF+  PARL ++K+ Q E   I+D + R A+A+
Sbjct: 162 VIEIEGGSLKLNEDIAAPQGTDIVVKELFYNTPARLKYMKTIQTELGHISDTMYRQALAH 221

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++FT     +    +      G+  + I+ V G +     V +  +  +  + GY G 
Sbjct: 222 PEIAFTLRHNGN---TLLQSPGGGDLLQVIAAVYGVNASKGMVPIEAEDLDYRVTGYIGR 278

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + +     +NGR ++++ +   I  AY   +P+ RYP+VVL+LE+ P  VDVNV
Sbjct: 279 PDLARSSRSGMSTIVNGRYIRNQGLHQAILRAYHTLLPINRYPLVVLMLEMHPSLVDVNV 338

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           HP+K  +RF     + +F+  S++  ++ + +    V
Sbjct: 339 HPSKLEVRFSKEPELNSFVENSVRAVLSGQVLIPQVV 375


>gi|331084835|ref|ZP_08333923.1| hypothetical protein HMPREF0987_00226 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410929|gb|EGG90351.1| hypothetical protein HMPREF0987_00226 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 691

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 140/414 (33%), Positives = 213/414 (51%), Gaps = 9/414 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+EN++DA+++ +   I  GG S  +I DN
Sbjct: 1   MPNIQVLDQVTIDKIAAGEVIERPASIVKELVENAIDAKATAITVEIKDGGISLIRIADN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  EE+P+A  RH TSKI   +D + I + GFRGEAL SI A++ + L ++  + + 
Sbjct: 61  GCGIPKEEVPLAFLRHSTSKIRSVEDLTGIASLGFRGEALSSIAAIAQVELRTKVKEADA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G Q  I G    S+  + M  GT   VR +FF  PAR  FLK+   E + ++++I R+A+
Sbjct: 121 GIQYRIEGGSEKSLEEIGMPDGTAFFVRQIFFNTPARRKFLKTPMTEASHVSELITRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P++SF F T    +      S NG   + I  + G D   N +E+N K+N + ++GY 
Sbjct: 181 SHPEISFQFLTNGQPKLH---TSGNGRLKDVIYHIYGRDITGNLLEINAKANGVAIRGYI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    +INGR V+   I   I  AY       +YP  VL   ID   +DV
Sbjct: 238 GKPLISRGNRNYENYYINGRYVKSSIIAKAIEDAYKGFTMQHKYPFTVLHFTIDGTDLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF     + NFI  +++ A+++K +     LS     S       K   P 
Sbjct: 298 NVHPTKMEVRFSKQQEVYNFIYNTLKDALSEKELIPRVELSVAEPVSQKSTFLEKAVSPS 357

Query: 358 YATSLTNTQ-EKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
               L + + EK+F++         +    +           E   A H Q   
Sbjct: 358 VPDVLPDKKNEKVFVEKLPQEARYAEAPSEEKNLDYFMKKMRERVTAYHNQSSQ 411



 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 127/273 (46%), Gaps = 4/273 (1%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
            +  ++   I  ++    +    F Q    +  + +      N QE    +  RL T   
Sbjct: 421 YRNQLSTDRIKEAAAYRAEQKKQFGQSEKVQEKIYRKEDKRENLQETP-QEIARLQTPKE 479

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
              D      D   + +     Y       Q+ + Y I +  D + I+DQHAAHER+++E
Sbjct: 480 AEEDTQLNFFDQKLLSKEAKQEY---TLVGQVFETYWIVEYRDQMYIIDQHAAHERVLYE 536

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
           +  +     + TSQ +  P +++L   E  L+ EH E+  ++G + E FG ++ A+R +P
Sbjct: 537 RTLKRMKEKQFTSQRISPPIVLNLSMQEEQLLSEHMENFTKIGFEIEPFGGDSYAVRAVP 596

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
             L       LL +++D + DS +T    D +   +A+M+C  +++   ++   E++ L+
Sbjct: 597 DNLFSIAKKDLLIEMLDSLSDSISTNLAPDIVLEKIASMSCKAAVKGNSRLSGREVDALI 656

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            E+ +  N   C HGRPT I +   ++EK F R
Sbjct: 657 GELLELDNPYHCPHGRPTIIAMTKRELEKKFKR 689


>gi|239623995|ref|ZP_04667026.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522026|gb|EEQ61892.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 786

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/340 (32%), Positives = 183/340 (53%), Gaps = 5/340 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  IN+IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG S  ++TDNG G
Sbjct: 4   ITVLDQNTINKIAAGEVIERPASVVKELLENAIDAQATAVTIEIKDGGCSMIRVTDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  ++I +A  RH TSKI   +D   + + GFRGEAL SI AV+ + L+++   + TG +
Sbjct: 64  IAKDQIALAFLRHATSKIKSVEDLFTVSSLGFRGEALASIAAVAQVELITKTSDSLTGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G     +  +    GT +  R+LF+  PAR  FLK+   E   +  ++ ++A+++P
Sbjct: 124 YQIEGGMEKGLEEIGAPEGTTIIARNLFYNTPARKKFLKTPMTEGAHVAALVEKIALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +S  F     N+    + S N N  + I  V G +   N + ++ +   + + G+ G P
Sbjct: 184 DISIRFIQNNQNKL---YTSGNHNLKDLIYTVFGREIAANLLSVDFEQPGMQVTGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N    FINGR ++   I   I  AY   +   +YP  +L   I P  +DVNVH
Sbjct: 241 VIARSNRNYENYFINGRYIRSNIISKAIEEAYKPFMMQHKYPFTMLHFTIQPDTLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           P K  +RF +   +   +++++  A+  K +     L++K
Sbjct: 301 PTKMELRFSDGESVYKSVVKAVGDALAHKELIPEVSLTEK 340



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 1/185 (0%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+   Y + +  + L I+DQHAAHE++++EK  +   + +  +Q +  P I+ L   E
Sbjct: 601 IGQLFDTYWMVEYNEQLFIIDQHAAHEKVLYEKTIKTLKTRQYDTQMVEPPIILTLNMNE 660

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             L+ ++ E    +G + E FG    A+R +PA L       LL +++D + D  + +  
Sbjct: 661 ELLLNKYMEYFTGMGFEIEPFGGREYAVRGVPANLFSIAKKDLLIEMLDGLSDDMSVHN- 719

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            D I   +A+M+C  +++    M   E N L+ ++    N   C HGRPT I +   ++E
Sbjct: 720 PDIIYEKVASMSCKAAVKGHHSMSFSEANELIDQLLGLDNPYACPHGRPTIISMSKYELE 779

Query: 590 KLFGR 594
           K F R
Sbjct: 780 KKFKR 784


>gi|281417498|ref|ZP_06248518.1| DNA mismatch repair protein MutL [Clostridium thermocellum JW20]
 gi|281408900|gb|EFB39158.1| DNA mismatch repair protein MutL [Clostridium thermocellum JW20]
          Length = 761

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 184/356 (51%), Gaps = 5/356 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   NQIAAGE++ERP+  +KEL+ENS+DA S+ +   I  GG SF ++ DNG 
Sbjct: 3   RIIILDENTANQIAAGEVVERPASVVKELVENSIDAGSTNISVEINNGGISFIKVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A +RH TSKI    D   I + GFRGEAL SI +VS + + SRP     G 
Sbjct: 63  GIEEDDIEIAFERHATSKIRRASDLEAITSLGFRGEALASIASVSTVEVTSRPAHREYGR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  +     V    GT   VRDLF+  PAR  FLK +  E   ++D++ R+A+  
Sbjct: 123 YVKIQGGTVLESGQVGCPAGTTFIVRDLFYNTPARFKFLKKDSTEAGYVSDIVSRIALGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF     K+    +     N +    I  + G++     +E++ +   + + GY G 
Sbjct: 183 PDISFRLINNKN---TVIHTPGNNDLLSTIYSLYGKETAKECMEISYEDETVKITGYAGS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +++N R +++K I S I  AY   +   ++  +VL +E++P  VDVNV
Sbjct: 240 PEIARANRNYQSIYLNKRYIKNKVISSAIDEAYKTYLMKNKFAFIVLYIELNPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           HP K  +RF     I   +  ++  A+  K    +  L     + F  + + K   
Sbjct: 300 HPTKMEVRFSREQEIFRAVYHAVNNALLSKTHIRNVSLKDSPKNYFKFEQSSKKEA 355



 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 4/286 (1%)

Query: 312 TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQEK 368
            +I   I   +  AIN+    T+  L +K   +  +   +         Y   L +  +K
Sbjct: 475 NLINGQISGLVNWAINEPINKTNDKLIEKSDGTALKGTGEECYNFDKSGYDNILKDVSDK 534

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                N +  N     +     +D  P ++ E   +       Q+   YI+ Q  D L+I
Sbjct: 535 PKDNRNDVDNNADTNFEKIRDGKDTRPQQDIERNVFLDARIIGQVFSTYILLQNEDDLII 594

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAAHER+ FE++++ +   +  +Q LLTP +I+L   E   + E  E  ++LG   E
Sbjct: 595 IDQHAAHERIRFEELKEKYARNESLAQYLLTPVVIELTNQEIVFLEEEKELFNKLGFIFE 654

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG N+I +R +P       + +   +++D ++     Y  +   E+ L  +AC  ++++
Sbjct: 655 SFGNNSIILRSVPIPDEGVGVKEAFLEVVDFLMSKGRKYD-KIIEEDALYQIACKSAVKA 713

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +K+  IE+  +L ++    N   C HGRPT +K+   + EK+F R
Sbjct: 714 NKKLDEIEIKAILDKLNMLQNPYTCPHGRPTVVKITKYEFEKMFKR 759


>gi|125973294|ref|YP_001037204.1| DNA mismatch repair protein MutL [Clostridium thermocellum ATCC
           27405]
 gi|125713519|gb|ABN52011.1| DNA mismatch repair protein MutL [Clostridium thermocellum ATCC
           27405]
          Length = 755

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 184/356 (51%), Gaps = 5/356 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   NQIAAGE++ERP+  +KEL+ENS+DA S+ +   I  GG SF ++ DNG 
Sbjct: 3   RIIILDENTANQIAAGEVVERPASVVKELVENSIDAGSTNISVEINNGGISFIKVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A +RH TSKI    D   I + GFRGEAL SI +VS + + SRP     G 
Sbjct: 63  GIEEDDIEIAFERHATSKIRRASDLEAITSLGFRGEALASIASVSTVEVTSRPAHREYGR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  +     V    GT   VRDLF+  PAR  FLK +  E   ++D++ R+A+  
Sbjct: 123 YVKIQGGTVLESGQVGCPAGTTFIVRDLFYNTPARFKFLKKDSTEAGYVSDIVSRIALGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF     K+    +     N +    I  + G++     +E++ +   + + GY G 
Sbjct: 183 PDISFRLINNKN---TVIHTPGNNDLLSTIYSLYGKETAKECMEISYEDETVKITGYAGS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +++N R +++K I S I  AY   +   ++  +VL +E++P  VDVNV
Sbjct: 240 PEIARANRNYQSIYLNKRYIKNKVISSAIDEAYKTYLMKNKFAFIVLYIELNPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           HP K  +RF     I   +  ++  A+  K    +  L     + F  + + K   
Sbjct: 300 HPTKMEVRFSREQEIFRAVYHAVNNALLSKTHIRNVSLKDSPKNYFKFEQSSKKEA 355



 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 4/286 (1%)

Query: 312 TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQEK 368
            +I   I   +  AIN+    T+  L +K   +  +   +         Y   L +  +K
Sbjct: 469 NLINGQISGLVNWAINEPINKTNDKLIEKSDGTALKGTGEECYNFDKSGYDNILKDVSDK 528

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                N +  N     +     +D  P ++ E   +       Q+   YI+ Q  D L+I
Sbjct: 529 PKDNRNDVDNNADTNFEKIRDGKDTRPQQDIERNVFLDARIIGQVFSTYILLQNEDDLII 588

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAAHER+ FE++++ +   +  +Q LLTP +I+L   E   + E  E  ++LG   E
Sbjct: 589 IDQHAAHERIRFEELKEKYARNESLAQYLLTPVVIELTNQEIVFLEEEKELFNKLGFIFE 648

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG N+I +R +P       + +   +++D ++     Y  +   E+ L  +AC  ++++
Sbjct: 649 SFGNNSIILRSVPIPDEGVGVKEAFLEVVDFLMSKGRKYD-KIIEEDALYQIACKSAVKA 707

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +K+  IE+  +L ++    N   C HGRPT +K+   + EK+F R
Sbjct: 708 NKKLDEIEIKAILDKLNMLQNPYTCPHGRPTVVKITKYEFEKMFKR 753


>gi|256003774|ref|ZP_05428762.1| DNA mismatch repair protein MutL [Clostridium thermocellum DSM
           2360]
 gi|255992335|gb|EEU02429.1| DNA mismatch repair protein MutL [Clostridium thermocellum DSM
           2360]
 gi|316940474|gb|ADU74508.1| DNA mismatch repair protein MutL [Clostridium thermocellum DSM
           1313]
          Length = 755

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 184/356 (51%), Gaps = 5/356 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   NQIAAGE++ERP+  +KEL+ENS+DA S+ +   I  GG SF ++ DNG 
Sbjct: 3   RIIILDENTANQIAAGEVVERPASVVKELVENSIDAGSTNISVEINNGGISFIKVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A +RH TSKI    D   I + GFRGEAL SI +VS + + SRP     G 
Sbjct: 63  GIEEDDIEIAFERHATSKIRRASDLEAITSLGFRGEALASIASVSTVEVTSRPAHREYGR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G  +     V    GT   VRDLF+  PAR  FLK +  E   ++D++ R+A+  
Sbjct: 123 YVKIQGGTVLESGQVGCPAGTTFIVRDLFYNTPARFKFLKKDSTEAGYVSDIVSRIALGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF     K+    +     N +    I  + G++     +E++ +   + + GY G 
Sbjct: 183 PDISFRLINNKN---TVIHTPGNNDLLSTIYSLYGKETAKECMEISYEDETVKITGYAGS 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   +++N R +++K I S I  AY   +   ++  +VL +E++P  VDVNV
Sbjct: 240 PEIARANRNYQSIYLNKRYIKNKVISSAIDEAYKTYLMKNKFAFIVLYIELNPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           HP K  +RF     I   +  ++  A+  K    +  L     + F  + + K   
Sbjct: 300 HPTKMEVRFSREQEIFRAVYHAVNNALLSKTHIRNVSLKDSPKNYFKFEQSSKKEA 355



 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 74/286 (25%), Positives = 134/286 (46%), Gaps = 4/286 (1%)

Query: 312 TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQEK 368
            +I   I   +  AIN+    T+  L +K   +  +   +         Y   L +  +K
Sbjct: 469 NLINGQISGLVNWAINEPINKTNDKLIEKSDGTALKGTGEECYNFDKSGYDNILKDVSDK 528

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                N +  N     +     +D  P ++ E   +       Q+   YI+ Q  D L+I
Sbjct: 529 PKDNRNDVDNNADTNFEKIRDGKDTRPQQDIERNVFLDARIIGQVFSTYILLQNEDDLII 588

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAAHER+ FE++++ +   +  +Q LLTP +I+L   E   + E  E  ++LG   E
Sbjct: 589 IDQHAAHERIRFEELKEKYARNESLAQYLLTPVVIELTNQEIVFLEEEKELFNKLGFIFE 648

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG N+I +R +P       + +   +++D ++     Y  +   E+ L  +AC  ++++
Sbjct: 649 SFGNNSIILRSVPIPDEGVGVKEAFLEVVDFLMSKGRKYD-KIIEEDALYQIACKSAVKA 707

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +K+  IE+  +L ++    N   C HGRPT +K+   + EK+F R
Sbjct: 708 NKKLDEIEIKAILDKLNMLQNPYTCPHGRPTVVKITKYEFEKMFKR 753


>gi|134294836|ref|YP_001118571.1| DNA mismatch repair protein [Burkholderia vietnamiensis G4]
 gi|134137993|gb|ABO53736.1| DNA mismatch repair protein MutL [Burkholderia vietnamiensis G4]
          Length = 681

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 206/375 (54%), Gaps = 12/375 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA +  +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGARSLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ L + SR        +
Sbjct: 83  IPPDELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAELAITSRTADVAHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DATTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCIEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N         +R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 200 DVAISVLHNGKAVEHWNASEP----AQRVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 255

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 256 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 315

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLPK 357
           P+K  +RFR+   I  ++  ++Q+A+ +   ++           + +  ++ A     P 
Sbjct: 316 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPDTTAGGHAAHLEATPREPASFGDTPL 375

Query: 358 YATSLTNTQEKLFLQ 372
              S   T    F  
Sbjct: 376 GQRSAAGTGATGFSP 390



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 69/194 (35%), Positives = 109/194 (56%)

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       +  Q+LL P
Sbjct: 486 HDEQPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKNALADRTVAVQSLLLP 545

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             +     E   + E  + L  LG       P  +AIR +PA+L   ++  L R ++ ++
Sbjct: 546 ISMTATPVEIGTVEEERDTLESLGFDLAVLSPTTLAIRAVPALLKDADLQSLARAVLADL 605

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+
Sbjct: 606 HAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTW 665

Query: 581 IKLKLSDIEKLFGR 594
            +L L+D+++LF R
Sbjct: 666 YQLTLNDLDRLFMR 679


>gi|222099649|ref|YP_002534217.1| DNA mismatch repair protein mutL [Thermotoga neapolitana DSM 4359]
 gi|254766183|sp|B9K7B8|MUTL_THENN RecName: Full=DNA mismatch repair protein mutL
 gi|221572039|gb|ACM22851.1| DNA mismatch repair protein mutL [Thermotoga neapolitana DSM 4359]
          Length = 512

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 146/596 (24%), Positives = 252/596 (42%), Gaps = 86/596 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+IR+L E +I +IAAGE+I  PS  +KEL+ENSLDA+++RV   +  GGK+  +++DNG
Sbjct: 1   MRIRRLPESLIRKIAAGEVIHNPSFVVKELVENSLDAQANRVVVEVENGGKNLVRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GMT EE+ +A++ H TSKI   +D   I T+GFRGEAL SI  VS   ++++  ++   
Sbjct: 61  TGMTKEEVLVAIEPHTTSKIESEEDLRRIRTYGFRGEALASIVQVSRTRIVTKTKEDALA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            Q+ I+G K+  +     + GT VEV+DLFF +P R   LKS  +E  +  ++  R A+ 
Sbjct: 121 TQVLITGGKVEEISETHRDTGTTVEVKDLFFNLPVRRKSLKSSSIELRMCREMFERFALV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V FTF +     +     S        I +    D     +   E+ +++ ++G   
Sbjct: 181 KNNVDFTFISDGKIIHSFPATSDLFERALLILE----DLRKGYITFEEELSDLKIKGIVS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R N    Y ++N R V  + +   +   Y   +P  RYP+ VL +E         
Sbjct: 237 AREITRPNRTGEYFYVNERFVISEELHEVLMKVYD--LPKRRYPIAVLFIET-------- 286

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
             P K  I      I+  F+                                        
Sbjct: 287 -DPEKLDINIHPSKIVVRFL---------------------------------------- 305

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
                  +E+   +         L           +    + +           + + Y 
Sbjct: 306 -------EEEKVKEALEEVLTKNLARKWYRSVTYEEISSRALSVAEPSSYRWFLVKKKYA 358

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +T D L  +D HA HER+I+E++           +  +            +L  E  E
Sbjct: 359 VVETEDALFFIDLHALHERVIYEEILAKRVWRSKNLKRRVIT----------SLPDEKLE 408

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L +LG    +F   ++ +R++P  L++  + +  ++II         +   + +   +A
Sbjct: 409 KLEKLGFSF-QFEGESLVVRKVPEFLTEDAVEEFFKEII---------HGSTEMLREKIA 458

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             AC  + RSG        ++L+ ++       +C HGRP   ++   D+++ F R
Sbjct: 459 LAACKLATRSGEF-DEKTASKLV-DLYFQKKYERCPHGRPVSFRISYEDLDRFFER 512


>gi|325263901|ref|ZP_08130634.1| DNA mismatch repair protein HexB [Clostridium sp. D5]
 gi|324030939|gb|EGB92221.1| DNA mismatch repair protein HexB [Clostridium sp. D5]
          Length = 743

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 127/390 (32%), Positives = 204/390 (52%), Gaps = 6/390 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+EN++DA ++ V   I  GG SF +ITDN
Sbjct: 1   MPHIQVLDQITIDKIAAGEVIERPASIVKELVENAIDARATAVVVEIQEGGISFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  E++P A  RH TSKI   +D S+I + GFRGEAL SI AV+ + L+++  ++  
Sbjct: 61  GSGIVREDVPNAFLRHSTSKIRAVEDLSHIESLGFRGEALSSIAAVTQVELITKTREDTF 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S+       GT   +R LF+ +PAR  FLK+   E   I D++ R+A+
Sbjct: 121 GTRYLIEGGKEQSLEDTGAPDGTTFLIRQLFYNVPARRKFLKTPMTEAGHIQDLLMRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VSF F      + +    S NG   + I  + G +   N ++++ +   I + GY 
Sbjct: 181 SHPEVSFQFINNGQEKLR---TSGNGRLKDVIYSIYGREVAANLIDMDYEKGGIRITGYL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G PT +RGN N    FINGR V+   I   I  AY + +   ++P VVL   I+   +DV
Sbjct: 238 GKPTISRGNRNFENFFINGRYVKSSMISKAIEDAYRDFVMQHKFPFVVLHFHINGEDIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF+    + N + + + + + +  +     + +               L  
Sbjct: 298 NVHPTKMELRFQKQQEVYNTVYEGVHRTLLEPELIPVVDVPEPPGEKVAPPAGSPFLLKP 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
            A +     ++  +   +  T +  P +  
Sbjct: 358 RAKAGAEPMKEASVPAIKNETAEEEPQEKN 387



 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 131/296 (44%), Gaps = 13/296 (4%)

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
             PAK+     N       +       +       S        S+  ++ +P   +P  
Sbjct: 459 FDPAKTEEASEN-------LRNMSVPGLQNYN---SIEKENAAPSAGEENISPGLSIPSR 508

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
            +            EN  S ++L    +     D   ++      Y       Q+   Y 
Sbjct: 509 LSEDKEIYGDSKNPENDASLSELAGKTEQLNLFDEKLLKREVKAEY---KLIGQVFDTYW 565

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + Q  D L I+DQHAAHER+++E+  +   + + TSQ L  P I+ L   E  L+ EH +
Sbjct: 566 LVQFQDSLYIIDQHAAHERVLYERTLKGMKNREFTSQYLSPPIILSLSMQETELLNEHMD 625

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
              R+G + E FG +  A+R IP  L      +LL +++D + D  TT    + I+  +A
Sbjct: 626 RFQRIGFEIEPFGGDEYAVRAIPDNLFGIAKKELLLEMLDGLTDGITTSMTPELIDEKVA 685

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +M+C  +++   ++ ++E++ L+ E+ +  N   C HGRPT I +   ++EK F R
Sbjct: 686 SMSCKAAVKGNNRLSAMEVDTLIGELLELDNPYHCPHGRPTIIAMTKRELEKKFKR 741


>gi|251796616|ref|YP_003011347.1| DNA mismatch repair protein MutL [Paenibacillus sp. JDR-2]
 gi|247544242|gb|ACT01261.1| DNA mismatch repair protein MutL [Paenibacillus sp. JDR-2]
          Length = 679

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 126/392 (32%), Positives = 201/392 (51%), Gaps = 5/392 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E++ NQIAAGE++ERP+  IKEL+EN++DA SS ++  I  GG SF ++TDNG 
Sbjct: 3   KIQVLDEQLANQIAAGEVVERPASVIKELVENAIDAGSSVIDITIEEGGLSFIRVTDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++  A QRH TSKI  S D   I + GFRGEALPSI AVS L  +S         
Sbjct: 63  GIEPGDMETAFQRHATSKISSSSDLFKIASLGFRGEALPSIAAVSRLECVSSIDSTGLAQ 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G  +++  P     GT + VRDLF+  PARL ++K+ Q E   ITD + R+A+A+
Sbjct: 123 RLFIEGGTVTASEPANSPQGTDMSVRDLFYNTPARLKYMKAIQTELGHITDYVYRIALAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++ T     S    +      G+  + I+ V G +     +++  ++++  L+GY   
Sbjct: 183 PGIAITLKHNGS---VLLRTLGTGDRLQVIAAVYGTNTAKAMLKVEGETSDYDLRGYISK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   V +NGR ++   +   I  AY   +P+ R+P+VVL + + P  +DVNV
Sbjct: 240 PELTRANRNGMTVIVNGRYIRSHAVNQAILQAYHTLLPINRFPIVVLEIGMHPSLLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  +RF     +R  + Q+++ A+ +           +        +A   H P   
Sbjct: 300 HPSKMEVRFSKENELRTLVEQAVKGALGQVRHIPGPAEKPEREKPLFVQDAISFHRPDPL 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
           +     +          + +        + + 
Sbjct: 360 SMPWGQERSPSNSNGSGAQDSSSHLPGGSVNP 391



 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 97/270 (35%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
           + N               ++       +        +    ++     +    T+   P+
Sbjct: 407 SFNSSFPQPPKRDYVPSDATERLYKPAEQRETSVREAAAPWEQAAPALQAAEETSAPPPA 466

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
            D                 +       Q+H  YI++Q  +GL ++DQHAAHER+ +E   
Sbjct: 467 PDSERPVGEASERPDGTPAFPDLYWIGQLHGTYIVAQAEEGLYLIDQHAAHERINYEYYF 526

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
           + F + +  SQ LL P  ++   GE   +          G++ E FG     +R  P   
Sbjct: 527 RKFGNPQAASQQLLVPLTLEFTSGEAEQLRGMIGLFQEAGVELEPFGAQTFLVRAYPEWF 586

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            +     ++ ++ + ++    +  +    E      +C  SI++  +    E   LL  +
Sbjct: 587 PQGEEQAIIEEMAELLLSERKSVNIAKLREKAAIMCSCKASIKANDRKTREEGEALLARL 646

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                   C HGRP  + L    +EK+F R
Sbjct: 647 AACNQPYTCPHGRPIVVHLSTYQLEKMFKR 676


>gi|197301743|ref|ZP_03166813.1| hypothetical protein RUMLAC_00469 [Ruminococcus lactaris ATCC
           29176]
 gi|197299183|gb|EDY33713.1| hypothetical protein RUMLAC_00469 [Ruminococcus lactaris ATCC
           29176]
          Length = 713

 Score =  350 bits (898), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 210/419 (50%), Gaps = 19/419 (4%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L +  I++IAAGE+IERP+  +KEL+EN++DA S+ V   I  GG SF +I DN
Sbjct: 1   MPHIHVLDQITIDKIAAGEVIERPASIVKELVENAIDAGSTSVTVEIKDGGISFIRIRDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  EE+  A  RH TSKI   +D S+I + GFRGEAL SI AV+   ++++   ++ 
Sbjct: 61  GCGIPKEEVKSAFLRHSTSKIETVEDLSHIASLGFRGEALSSIAAVTRTEVITKTKDSDL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S+       GT   V  LF+ +PAR  FLK+   E   + D++  +A+
Sbjct: 121 GTKYVIEGGKEVSLEETGAPDGTTFLVHQLFYNVPARRKFLKTPMTEAGHVQDLLMHLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+V+  F      + +    S NG   + I Q+ G D   N +EL+ +   + + G+ 
Sbjct: 181 SHPEVALQFLNNGQEKLR---TSGNGKLKDVIYQIYGRDVAANLIELDYEKGGLRITGFL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    F+NGR V+   I   +  AY + +   ++P  VL   ++  +VD+
Sbjct: 238 GKPVITRGNRNFENFFVNGRYVKSGMISKALEDAYRDFVMQHKFPFAVLHFHLNGEEVDI 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI------------SSF 345
           NVHP K  +RF+    +   + +++ + + +  +   + + + +              + 
Sbjct: 298 NVHPTKMELRFQKQQEVYGTVFEAVHRTLLEPELIQRAEVPEPVAVRMEEEKRRSEEKAE 357

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
            +  +P    P+ + S+   + +    EN  +  D   ++    ++  +  E SE    
Sbjct: 358 RRKESPFLLRPRASASMAG-ESRTVYGENPYTKKDAESTERTGAAQPAEHTENSEVMQP 415



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/240 (26%), Positives = 119/240 (49%), Gaps = 2/240 (0%)

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA--CAQIH 414
           + +++  + +  +F Q+ ++        +     +  D  EE+              Q+ 
Sbjct: 472 RSSSAEVSDKNGIFRQDEQMERISERVQEQKEKPKQMDLFEENFLKREVRAEYKLIGQVF 531

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + +  D L I+DQHAAHER+++E+  Q   + + TSQ L  P I+ L   E  L+ 
Sbjct: 532 DTYWLVEFQDKLYIIDQHAAHERVLYERTLQGMKTREFTSQYLSPPIILSLSMQEAQLLN 591

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           E+ +   R+G + E FG    A+R +P  L      +LL +++D++ D  +T    + I+
Sbjct: 592 ENLDRFTRIGFEIEPFGGEEYAVRAVPDNLFSIAKKELLMEMLDDLADGLSTGMTPELID 651

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +A+M+C  +++   ++ + E++ L+ E+    N   C HGRPT I +   D+EK F R
Sbjct: 652 EKVASMSCKAAVKGNNRLSAQEVDELIAELLTLDNPYHCPHGRPTIIAMTKHDLEKKFKR 711


>gi|330815630|ref|YP_004359335.1| DNA mismatch repair protein MutL [Burkholderia gladioli BSR3]
 gi|327368023|gb|AEA59379.1| DNA mismatch repair protein MutL [Burkholderia gladioli BSR3]
          Length = 704

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 202/360 (56%), Gaps = 9/360 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA +  +  V+  GG     ITD+G G
Sbjct: 31  IQPLPDQLISQIAAGEVVERPASVVKELLENAIDAGAGSLRIVLEEGGVKRISITDDGCG 90

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +  ++ T GFRGEAL SI +V+ +++ SR        +
Sbjct: 91  IPADELPLALMRHATSKIRSLHELESVATLGFRGEALASIASVAEMSITSRTEDAAHATR 150

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I        ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 151 IDADT---GALSPAAGTRGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 207

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+ +           N          R+S+++GE F    + L+E++  + + G  G+P
Sbjct: 208 EVAISVLHNGRAVEHWNASEP----AVRVSKILGEGFATAHLPLDERAGPLAVYGCAGLP 263

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 264 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 323

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P+K  +RFR+   I  ++  ++Q+A+ +   ++    +    +             +   
Sbjct: 324 PSKIEVRFRDSRSIHQYVFHAVQRALARHAGASPETTAGGHAAHLAPAQPGSPASFERTP 383



 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/194 (37%), Positives = 110/194 (56%)

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                LG A  Q+H  Y+++Q   GLVIVD HAAHER+++E+ +    +  I  Q+LL P
Sbjct: 509 HDQQPLGFALGQVHGIYVLAQNAQGLVIVDMHAAHERILYEQFKTALANRSIAVQSLLLP 568

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             I     E     E  E L  LG       P  +AIR +PA+L   ++P L R I+ ++
Sbjct: 569 VTITATPVEIGTADEERETLDALGFDLAMLSPTTLAIRAVPALLKDADLPTLARAILADL 628

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            +   +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+
Sbjct: 629 HEFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTW 688

Query: 581 IKLKLSDIEKLFGR 594
            +L L D+++LF R
Sbjct: 689 YQLTLGDLDRLFMR 702


>gi|284040404|ref|YP_003390334.1| DNA mismatch repair protein MutL [Spirosoma linguale DSM 74]
 gi|283819697|gb|ADB41535.1| DNA mismatch repair protein MutL [Spirosoma linguale DSM 74]
          Length = 685

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 131/435 (30%), Positives = 216/435 (49%), Gaps = 16/435 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L + I NQIAAGE+++RP+  +KEL+ENS+DA++  V+ ++   G++  QI D+G G
Sbjct: 5   IQLLPDSIANQIAAGEVVQRPASVVKELLENSVDAKAKSVQVIVREAGRNLIQIVDDGVG 64

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT  +  M+ +RH TSKI  SDD   I T GFRGEAL SI AV+ + + +R  +   G  
Sbjct: 65  MTETDARMSFERHATSKIRSSDDLFRIRTMGFRGEALASIAAVAQIEMRTRRAEEELGTL 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  I +   ++  PGT + +++LFF +PAR NFLKS  VE   I D  +R+A+A P
Sbjct: 125 IRIEGSDIKAQEAISCLPGTNLLIKNLFFNVPARRNFLKSNSVEMRHIIDEFQRVALANP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V+F+        Y +      G    RI  + G+ +        E++  +T+ GY G P
Sbjct: 185 EVAFSLFHNDQEIYNLPA----GKLSRRIVDMFGKSYREQLNFCEEQTPYVTVHGYIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +   N+ + F+N R ++  ++   +  AY  T+P G +P  VL ++IDP  +D+N+H
Sbjct: 241 ESAKKARNEQFFFVNNRFIKHNYLHHAVVGAYEGTLPEGSHPFYVLFIDIDPSHIDINIH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL----------SKKMISSFHQDNA 350
           P K+ I+F +   +   ++ +++KA+    +S S               K +S+    N 
Sbjct: 301 PTKTEIKFDDERSVYAIMMAAVRKAVGLYNLSPSLDFDSDVNFLAGVRPKPVSTDVNVNR 360

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
                 K ATS   +   +       +T           +E  D    S     +     
Sbjct: 361 NGNADSKSATSGPGSARPISPSWASGATQQPANERTSLRNESLDKAAGSSFDIPRKADHK 420

Query: 411 AQIHQNYIISQTTDG 425
             ++    + +   G
Sbjct: 421 PSVNNWQTLYEGVAG 435



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 122/301 (40%), Gaps = 4/301 (1%)

Query: 296 DVNVHPAKSYIRFRNP--TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
                PA      RN              +KA +K  ++    L + +  +      P  
Sbjct: 386 GATQQPANERTSLRNESLDKAAGSSFDIPRKADHKPSVNNWQTLYEGVAGNASPSPGPVA 445

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS-EDNDPVEESEATHYQLGIACAQ 412
              +    L   +    + E   + ++ +         + +    E +           Q
Sbjct: 446 QPVEKGDWLGPAKPAPAITEPPTAESEPITLGSRANQLQVSLESPEQDVPVLVDDDNIVQ 505

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           I   Y+++    G++++DQ  AHER+++++           SQ LL P+ I L+  +  L
Sbjct: 506 IQNRYLLAPIKSGMLLIDQRRAHERILYDQFHASLTKRNGASQQLLFPKTITLMPVDFQL 565

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
            ++  +DL  LG + +  G N   IR +PA++  +N  +L  +++ ++   +    L DR
Sbjct: 566 ALDLRDDLTNLGFEFDELGANTFVIRGVPALIMGENEEELFANLLAQLRADTGRLKL-DR 624

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           IE++  ++A   ++R   ++ + E   L+ ++  + N S    G P  + L L  I  LF
Sbjct: 625 IESMARSLARRSAMRYVNRLSTTERKALVNQLFASANPSYTPTGEPVTVVLSLDKIAGLF 684

Query: 593 G 593
            
Sbjct: 685 R 685


>gi|167771418|ref|ZP_02443471.1| hypothetical protein ANACOL_02784 [Anaerotruncus colihominis DSM
           17241]
 gi|167666058|gb|EDS10188.1| hypothetical protein ANACOL_02784 [Anaerotruncus colihominis DSM
           17241]
          Length = 691

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 197/400 (49%), Gaps = 5/400 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  ++   IAAGE++ERP+  +KEL+EN++DA ++++   I GGG  + ++TDNG 
Sbjct: 3   KINVLDRQVAELIAAGEVVERPASIVKELVENAVDAGATKITVEIQGGGVRYIRVTDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A  RH TSK+   +D  +I T GFRGEAL SI A+  + +++R      G 
Sbjct: 63  GILREDVKNAFLRHATSKVRVQEDLGHITTMGFRGEALASIAAMCRVEMLTRTADEIAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I+G +   +       GT + VRD+F+  PAR+ FLK +  E N +  V+ + A+A 
Sbjct: 123 RYTIAGGEPGELADAGCPVGTTISVRDVFYNTPARMKFLKKDLSEGNSVAAVVEKEALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F    + R +       G        V+G +F    + ++ +   + L+G    
Sbjct: 183 PQISFKFIRDGAVRLQ---TPGGGQLAAAARCVLGREFAEQTIPVSYELEGLALEGLISR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+F RG+      FIN R V+ K  ++    AY   + +GR+P   L L I P+ VDVNV
Sbjct: 240 PSFARGSRTLQNFFINTRFVRSKTCMAAFEEAYRNMLMVGRFPSCALNLTIPPQTVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RF N   + + +    + A+    ++      +   + F    AP+    +  
Sbjct: 300 HPAKTEVRFANEKSVFDLVYYGCKTALGAHRLAPEIKADELRYNPFAAHTAPEAPKQQRM 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           ++     +     E     +     +     E     +E 
Sbjct: 360 SAAQYRIQTGVPDEQPARVSAEQYREQMRALEPAAQGKEE 399



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 123/296 (41%), Gaps = 7/296 (2%)

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT-- 360
           K      N   I         +   +   +   V  +         ++   +   YAT  
Sbjct: 397 KEERCVLNAPEIAPAPQAHSPQTRIRSHRAIDIVFDEPDDDDAQSVSSANPYADSYATAR 456

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNYI 418
            +      L +   +    D   +     +  +  ++ +      Y+  +   ++   YI
Sbjct: 457 PVALAARTLPVLAEQAPPRDFPAAPAGEEAAPSVMIQPACAADDPYENAVLIGELFGTYI 516

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +    ++++D+HAAHERL++ ++           Q LLTP  + L   E A ++EH  
Sbjct: 517 VLENGPEMILIDKHAAHERLLYNRL--VAAGPGEDRQLLLTPVSVHLSPEEHAAVLEHAP 574

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L R G+  E FG   + +RE   +L+  ++  ++ +   +++  +        +E +  
Sbjct: 575 LLARAGVGIEDFGDGFVVVREAAPVLADADLAAIVTECAQKLL-LANERLTPHVLEELYH 633

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           TMAC  +I++  +  +  + +L+  +  + ++  C HGRP  I++   +IEK FGR
Sbjct: 634 TMACRSAIKAHDRTAAPTLRQLVELLRADGDADHCPHGRPVSIRMSRHEIEKKFGR 689


>gi|308069370|ref|YP_003870975.1| DNA mismatch repair protein mutL [Paenibacillus polymyxa E681]
 gi|305858649|gb|ADM70437.1| DNA mismatch repair protein mutL [Paenibacillus polymyxa E681]
          Length = 724

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 128/398 (32%), Positives = 208/398 (52%), Gaps = 8/398 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E I NQIAAGE++ERP+  +KEL+EN++DA  +RV+  +  GG    ++TDNG 
Sbjct: 3   KIRVLDEHIANQIAAGEVVERPASVVKELVENAIDAGGTRVDVWVEEGGLQSIRVTDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A  RH TSKI    D   I + GFRGEALPSI AVS + L++    +    
Sbjct: 63  GIEPEDVETAFYRHATSKIGHGRDLFQITSLGFRGEALPSIAAVSKVELLTAAGDDGRAR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G K+      A   GT   VR+LF+  PARL ++K+ Q E   I+DV+ RMA+++
Sbjct: 123 KLVIEGGKLVLHEDAASRQGTDFTVRELFYNTPARLKYMKTIQTELGHISDVLYRMALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+FT     +    +     NG+  + I+ + G     + + L  +S +  + GY   
Sbjct: 183 PEVAFTLRHNGN---TLLQTLGNGDLLQVIAAIYGTSAAKSMLLLEGESLDYRISGYISR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P + R N N     +NGR V+   +   +  AY   +P+ R+P+ V+ LE+ P  VDVNV
Sbjct: 240 PEWTRSNRNAISTVVNGRFVRSYGLNQALLKAYHTLLPINRFPLAVIQLEMHPSLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV---LSKKMISSFHQDNAPKTHLP 356
           HPAK  +RF   T +   +  S++  + ++ +   +V   +  K   SF Q+    +   
Sbjct: 300 HPAKLEVRFSKETELFQLVEDSVKAVLGQQVLIPKAVKREIGGKDSGSFVQEQFHFSKGN 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                  + +++       +++ +        Y + N+
Sbjct: 360 GAEGDAPSGKDRGGALPLSVASPESQLPRQSNYLDRNE 397



 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 1/198 (0%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           E  E   +       Q H  Y+I+Q   GL ++DQHAAHER+ +E   + F +    SQ 
Sbjct: 526 EVPELPTFPELNLIGQHHGTYLIAQNDQGLYLIDQHAAHERVNYEFYYEKFGNPASVSQE 585

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P  +D    E   +        + G+  E FG     +   P  L +     ++ ++
Sbjct: 586 LLLPITLDFTPSETEKLKTRLHWFEQAGVYLEHFGGQTFRVSSYPYWLPQGEEADIIEEM 645

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
              +++      L    E      +C  SI++ +K+   +   LL  +        C HG
Sbjct: 646 AGWVLEERAID-LAKLREAASIMCSCRASIKANQKLTDQQAIVLLERLAACKQPYTCPHG 704

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP  +     D+EKLF R
Sbjct: 705 RPIVVSFSTYDLEKLFKR 722


>gi|329943289|ref|ZP_08292063.1| DNA mismatch repair MutL family protein [Chlamydophila psittaci
           Cal10]
 gi|332287867|ref|YP_004422768.1| DNA mismatch repair protein [Chlamydophila psittaci 6BC]
 gi|313848439|emb|CBY17443.1| DNA mismatch repair protein MutL [Chlamydophila psittaci RD1]
 gi|325506749|gb|ADZ18387.1| DNA mismatch repair protein [Chlamydophila psittaci 6BC]
 gi|328814836|gb|EGF84826.1| DNA mismatch repair MutL family protein [Chlamydophila psittaci
           Cal10]
          Length = 582

 Score =  350 bits (897), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 140/520 (26%), Positives = 253/520 (48%), Gaps = 14/520 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L    INQIAAGE+IE     +KEL+EN+LDA +  +E    GGG+    + DNG G
Sbjct: 7   IQLLDTVTINQIAAGEVIENAISVVKELVENALDAGADEIEVETLGGGQGLIVVKDNGCG 66

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+SEE+ +A++RH TSKI +  D  ++ +FGFRGEALP+I ++S + ++S P     G++
Sbjct: 67  MSSEEVTLALKRHATSKIEEFSDVFSLSSFGFRGEALPAIASISKMEILSCPKGGE-GSR 125

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G ++ +        GT + V  LF+ +P R  F KS Q +   +  ++    ++  
Sbjct: 126 TIIHGGEVIAAEAKPRQLGTTISVDSLFYNVPVRRGFQKSPQTDRIAMRKLLENRILSIE 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V +++ + +   + +          ER++ V+GE F+  A+ ++     I + G+ G P
Sbjct: 186 GVGWSWISERQQEFHILKHQG---LAERVAFVMGEGFMKEALRVDRVEEPIRIVGFLGSP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F+R       +FIN R V    I   I  AYA  +P  RYPV VL L + P+  D NVH
Sbjct: 243 CFHRPTRLGQRIFINDRPVDSALISKQISEAYAMLLPPQRYPVFVLKLYLPPKWCDFNVH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTHLPKY 358
           P K+ +R      +R F+ +SI + + +   S+ S  +   + +  F  +  P+  + + 
Sbjct: 303 PQKTEVRILKEDFVREFLSESIGEVLARSQESSISEKTSFTLPTLRFFDEQLPEAPVEEP 362

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
              ++    +L     R S +      +    +    +   E+   +   +  +I    +
Sbjct: 363 REPMSLPVTRLATPSIR-SVSFPDCQQEIPSIDTQTEIVWGESQEVRFLTSLGKI----V 417

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++ ++G+  +   AA + L +  + +        SQ  L P  +++   E A ++ H E
Sbjct: 418 LAEDSEGVHAIFTEAARKHLFYLSLIESQQEH-YKSQFFLVPLCLEVTPQERAFLLSHIE 476

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           +  +LGI+  + GP   AI   P  + ++ +   +  +  
Sbjct: 477 EFKQLGIEISQMGPCVFAIESAPTFIGEEELKSWILSLAA 516


>gi|109900275|ref|YP_663530.1| DNA mismatch repair protein MutL [Pseudoalteromonas atlantica T6c]
 gi|109702556|gb|ABG42476.1| DNA mismatch repair protein MutL [Pseudoalteromonas atlantica T6c]
          Length = 639

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 155/593 (26%), Positives = 256/593 (43%), Gaps = 56/593 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ +S+++  I  GG     I DNG 
Sbjct: 7   TIRILPAQLANQIAAGEVVERPASVVKELVENSLDSGASQIDIEIDKGGHKRICIRDNGG 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A+ RH TSKIS  DD  +IH+ GFRGEAL SI +V+ LTL S+P       
Sbjct: 67  GIEKDQLALALSRHATSKISSLDDLEHIHSLGFRGEALASISSVARLTLTSKPINQPQAW 126

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           Q    G  +     PVA   G+ VEV DLFF  PAR  FL++E+ E N I +VIRR++++
Sbjct: 127 QAHAEGRDMQVQLNPVAHPDGSSVEVIDLFFNTPARRKFLRAEKTEFNHIDEVIRRISLS 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              VSF+         K    +   +  +R+  +  +DF N A+ L+    ++ L G+  
Sbjct: 187 RFDVSFSLKHNGKLLRKYPALTEQTDHLKRLGAICNKDFANTAIALDSHYQDMELIGWIT 246

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P      ++  Y ++NGR ++DK I   IR A+   I     P  VL L I   +VDVN
Sbjct: 247 PPDATTQQSDVQYFYVNGRMMRDKLINHAIRQAFEGVISPDSSPNYVLYLNIAHHEVDVN 306

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHPAK  +RF    ++ +FI +++   I++   +T +      ++     +     L   
Sbjct: 307 VHPAKHEVRFHQARLVHDFIFRALADGIHQYFSNTPAQSGPSQLAEVALQHDYIAPLQSA 366

Query: 359 ATSLTNTQEKLFLQENRLSTND--------LLPSDDPTYSEDNDPVEES----------- 399
             S T   E     +   S+ D         L SD+   +     V+             
Sbjct: 367 QQSSTGVAEGEPASQMHSSSPDYSSALSSESLTSDNHPLNNTAGRVQAPGSGSGSGSGSG 426

Query: 400 ----------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA---HERLIF 440
                           +     +             +Q     V VD+       E   +
Sbjct: 427 SGSGSGSGNSLSAQAVKGYQQLMSAQHVLNSDVTHSAQNEHLCVPVDEERLLVLFEAQHY 486

Query: 441 ---------EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
                      +   F++    SQ LL P  I   +          E L    ++   + 
Sbjct: 487 VLTIRALVAAHISTTFDTDNCVSQPLLMPVSIVADQPALQRAQAMYEALLNNRVEI-GWS 545

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
              + ++++P+ +       +L +++D  +         +   ++   +A + 
Sbjct: 546 QKRVILKKVPSGMRHLPWANILPELLDNAVSGEN-----EVKTHLFNCIALHS 593


>gi|328915129|gb|AEB55962.1| DNA mismatch repair protein hexb, putative [Chlamydophila psittaci
           6BC]
          Length = 617

 Score =  349 bits (896), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 140/520 (26%), Positives = 253/520 (48%), Gaps = 14/520 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L    INQIAAGE+IE     +KEL+EN+LDA +  +E    GGG+    + DNG G
Sbjct: 42  IQLLDTVTINQIAAGEVIENAISVVKELVENALDAGADEIEVETLGGGQGLIVVKDNGCG 101

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+SEE+ +A++RH TSKI +  D  ++ +FGFRGEALP+I ++S + ++S P     G++
Sbjct: 102 MSSEEVTLALKRHATSKIEEFSDVFSLSSFGFRGEALPAIASISKMEILSCPKGGE-GSR 160

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G ++ +        GT + V  LF+ +P R  F KS Q +   +  ++    ++  
Sbjct: 161 TIIHGGEVIAAEAKPRQLGTTISVDSLFYNVPVRRGFQKSPQTDRIAMRKLLENRILSIE 220

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V +++ + +   + +          ER++ V+GE F+  A+ ++     I + G+ G P
Sbjct: 221 GVGWSWISERQQEFHILKHQG---LAERVAFVMGEGFMKEALRVDRVEEPIRIVGFLGSP 277

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F+R       +FIN R V    I   I  AYA  +P  RYPV VL L + P+  D NVH
Sbjct: 278 CFHRPTRLGQRIFINDRPVDSALISKQISEAYAMLLPPQRYPVFVLKLYLPPKWCDFNVH 337

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTHLPKY 358
           P K+ +R      +R F+ +SI + + +   S+ S  +   + +  F  +  P+  + + 
Sbjct: 338 PQKTEVRILKEDFVREFLSESIGEVLARSQESSISEKTSFTLPTLRFFDEQLPEAPVEEP 397

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
              ++    +L     R S +      +    +    +   E+   +   +  +I    +
Sbjct: 398 REPMSLPVTRLATPSIR-SVSFPDCQQEIPSIDTQTEIVWGESQEVRFLTSLGKI----V 452

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++ ++G+  +   AA + L +  + +        SQ  L P  +++   E A ++ H E
Sbjct: 453 LAEDSEGVHAIFTEAARKHLFYLSLIESQQEH-YKSQFFLVPLCLEVTPQERAFLLSHIE 511

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           +  +LGI+  + GP   AI   P  + ++ +   +  +  
Sbjct: 512 EFKQLGIEISQMGPCVFAIESAPTFIGEEELKSWILSLAA 551


>gi|170691336|ref|ZP_02882501.1| DNA mismatch repair protein MutL [Burkholderia graminis C4D1M]
 gi|170143541|gb|EDT11704.1| DNA mismatch repair protein MutL [Burkholderia graminis C4D1M]
          Length = 707

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 199/370 (53%), Gaps = 11/370 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 38  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGAQTLRIMLDEGGVKRISITDDGCG 97

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +T+ SR        +
Sbjct: 98  IPENELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVAQMTITSRTADAPHAMR 157

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 158 V---DAQTGVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 214

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E +  + + G  G+P
Sbjct: 215 DVAISVLHNGKAVEHWNASEPP----VRVAKILGETFATAHLPLDESAGPLAVYGCAGLP 270

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG ++Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 271 TASRGRSDQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 330

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL--PKY 358
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +           L  P +
Sbjct: 331 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLQASAGGGVSLGTPAF 390

Query: 359 ATSLTNTQEK 368
             S   T   
Sbjct: 391 GASSFGTSPS 400



 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 2/230 (0%)

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
            Q+   L E R S  +     + + S  +     + A    LG A  QIH  Y+++Q   
Sbjct: 478 AQQGATLFEARDSAAEGASPYNTSASYASPTF--NPADDQPLGFALGQIHGIYVLAQNAH 535

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GLVIVD HAAHER+++E+ +       I  Q LL P+ +     E   + E  + L  LG
Sbjct: 536 GLVIVDMHAAHERILYEQFKNALADRTIAVQPLLIPQTMQADAVEIGTVDEERDTLDALG 595

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
                  P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ 
Sbjct: 596 FDLAVLSPTTLAIRAVPALLKDADLQALARAVLSDLHAYGGSRVLTERQHELLGTLACHH 655

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L LSD+++LF R
Sbjct: 656 AVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLSDLDRLFMR 705


>gi|295094833|emb|CBK83924.1| DNA mismatch repair protein MutL [Coprococcus sp. ART55/1]
          Length = 717

 Score =  349 bits (895), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 123/430 (28%), Positives = 217/430 (50%), Gaps = 9/430 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +  IN+IAAGE+IE+PS  IKEL+ENS+D+ ++ V   + GGG SF ++TDNG G
Sbjct: 2   IKVLDQNTINKIAAGEVIEKPSSVIKELVENSIDSGATAVTVEVKGGGLSFLRVTDNGAG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A  RH TSK+   +D  +I + GFRGEAL SI AV+ + ++++   + TG +
Sbjct: 62  IKKDEVKLAFLRHATSKLVTVEDLLSISSLGFRGEALASIAAVAQVEMITKTADDVTGLR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G K  S   +    GT + VR+LF+  PAR  F+K++  ET+ I D++ R+ +++P
Sbjct: 122 YQIHGGKEISSEEIGAPGGTTIIVRNLFYNTPARKKFMKTDATETSYIYDLMCRICMSHP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF F    +++    F S NG   + I  + G D  +N +E+N +++ + + GY   P
Sbjct: 182 EISFKFIANGTDKL---FTSGNGKLRDIIYHIYGRDITSNLLEINAENDYMKISGYIARP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +RGN +    ++N R ++   +   I  A+   + + ++P   +  ++ P  +DVNVH
Sbjct: 239 CISRGNRSFEGYYVNHRYIKSAVLTKAIEDAFRTFVMIHKFPFTEINFQVRPDLLDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  ++F N   I +F   +I++ +  K +       K        +   +  + K   
Sbjct: 299 PTKMELKFANSQDIYSFTYNAIRETLLFKELIPDVAPGKDP----KPETFKQRDVGKAPE 354

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           +  N + +  ++    +     P         N P +   A           I       
Sbjct: 355 AFENKRREAIVRAEERTVPQSQPEQHRPAEPQNQPEQLRSAETQTSPQQLCPIEPQTSSQ 414

Query: 421 QTTDGLVIVD 430
                + I+D
Sbjct: 415 PVHPVIEIID 424



 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 109/250 (43%), Gaps = 3/250 (1%)

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
            ++  A     P   +    TQ+      +  +  +             +     EA   
Sbjct: 469 VNESPAYTAPAPARPSVTAATQDSTVSAASAAAYIEEAGKKYVQQDMFQEKFLTKEARAK 528

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  Q+ + Y + +      I+DQHAAHE++ +E++ +++ + KI SQ L+ P ++ 
Sbjct: 529 HRL--IGQLFKTYWLIEYDGKFFIMDQHAAHEKVKYEELMENYKNKKIYSQYLMPPAVVT 586

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   + E+ +    LG + E FG     +  +P  L   +  +L  D I +   S+
Sbjct: 587 LSAAEIEFLHENMDMFEALGYQIENFGGREFKLNAVPDNLFGLDGRELFIDFIADASSSA 646

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
              T+   I   L+TMAC  +I+   ++   E + L+ ++ K  N   C HGRPT I + 
Sbjct: 647 KKVTIDTFIHK-LSTMACKAAIKGNTEISFKEADALIDQLLKLENPYTCPHGRPTVISMT 705

Query: 585 LSDIEKLFGR 594
            ++IEK F R
Sbjct: 706 EAEIEKKFKR 715


>gi|323524833|ref|YP_004226986.1| DNA mismatch repair protein MutL [Burkholderia sp. CCGE1001]
 gi|323381835|gb|ADX53926.1| DNA mismatch repair protein MutL [Burkholderia sp. CCGE1001]
          Length = 682

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/336 (36%), Positives = 192/336 (57%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 26  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGARTLRIMLDEGGVKRISITDDGCG 85

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +T+ SR        +
Sbjct: 86  IPENELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVAQMTITSRTADAPHAVR 145

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 146 V---DAQTGVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 202

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E +  + + G  G+P
Sbjct: 203 DVAISVLHNGKAVEHWNASEPP----VRVAKILGETFATAHLPLDESAGPLAVYGCAGLP 258

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG ++Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 259 TASRGRSDQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 318

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 319 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 354



 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 2/251 (0%)

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
              Q  A    L     S   T +   L E R S  +     + +    +     ++   
Sbjct: 432 PVAQPLAFYDALFGRKDSSAATAQGATLFEARDSAAEGPSPYNASAPHASPAFHPAD--D 489

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       I  Q LL P+ +
Sbjct: 490 QPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKNALADRTIAVQPLLIPQTL 549

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                E   + E  E L  LG       P  +AIR +PA+L   ++  L R ++ ++   
Sbjct: 550 QADPVEIGTVEEERETLDALGFDLAILSPTTLAIRAVPALLKDADLQALARAVLSDLHAY 609

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L
Sbjct: 610 GGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQL 669

Query: 584 KLSDIEKLFGR 594
            LSD+++LF R
Sbjct: 670 TLSDLDRLFMR 680


>gi|332304701|ref|YP_004432552.1| DNA mismatch repair protein MutL [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172030|gb|AEE21284.1| DNA mismatch repair protein MutL [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 667

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 166/644 (25%), Positives = 283/644 (43%), Gaps = 79/644 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++ NQIAAGE++ERP+  +KEL+ENSLD+ +S+++  I  GG     I DNG G
Sbjct: 8   IRILPAQLANQIAAGEVVERPASVVKELVENSLDSGASQIDIEIDKGGHKRICIRDNGGG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +A+ RH TSKIS  DD  +IH+ GFRGEAL SI +V+ LTL S+P       Q
Sbjct: 68  IEKDQLALALSRHATSKISSLDDLEHIHSLGFRGEALASISSVARLTLTSKPKSQQQAWQ 127

Query: 121 IAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               G  +     PVA   GT VEV DLFF  PAR  FL++E+ E N I ++IRR++++ 
Sbjct: 128 AHAQGRDMEVQLNPVAHPDGTCVEVIDLFFNTPARRKFLRAEKTEFNHIDEIIRRISLSR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             VSF+         K    +   +  +R+  +  +DF + A+ L+    ++TL G+   
Sbjct: 188 FDVSFSLKHNGKLLRKYPALTQQTDHLKRLGAICNKDFASTAIALDSHYQDMTLSGWIAP 247

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P      ++  Y ++NGR ++DK I   IR A+   I     P  VL L I   +VDVNV
Sbjct: 248 PDVAHQQSDVQYFYVNGRMMRDKLINHAIRQAFEGVIHPDSSPNYVLYLNITHNEVDVNV 307

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RF    ++ +FI ++I   I++      S      ++     +     L    
Sbjct: 308 HPAKHEVRFHQARLVHDFIFRAIADGIHQYFSDAPSQAGPNELAEVAPQHDYIAPLQSAP 367

Query: 360 TSLTNTQEK--------------LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
               NTQE+                 + ++LS N+   S   + + + D   + ++ + Q
Sbjct: 368 QETENTQEQIEQRPHNQFVRAPYADNEASKLSVNESQFSSGYSPATNGDTRAQQQSDNMQ 427

Query: 406 L------------------------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF- 440
                                        AQ  + Y    +T+  +  D  +  E     
Sbjct: 428 NVAGEAPQRNGNSAPRSAASRPGSGNSVSAQAVKGYQQLMSTNKTLSADVSSPIENHHLC 487

Query: 441 -----EKMRQDFN---------------------STKITSQTLLTPEIIDLLEGECALIM 474
                E++   F+                        + +Q LL P  I   +       
Sbjct: 488 LPVDDERLLVLFDAQHYVLPANALVAAHLSTTFDEQNMVAQPLLMPVSIAADKETLHCAQ 547

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
              + L    ++   +    I +R++P+ + +     +L D++D  + + +   +Q   E
Sbjct: 548 ALYDALLNNRVEI-GWSQKRIILRKVPSGMRQLPWANILPDLLDTQMSTESPEKMQSIDE 606

Query: 535 -----NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
                ++   +A +       K+  ++M+++   +  +P S   
Sbjct: 607 SAVKAHLFHCIALHSP-----KLTPLQMHKMWMTLHDHPKSFNT 645


>gi|149910178|ref|ZP_01898824.1| DNA mismatch repair protein [Moritella sp. PE36]
 gi|149806764|gb|EDM66728.1| DNA mismatch repair protein [Moritella sp. PE36]
          Length = 674

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 223/482 (46%), Gaps = 6/482 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERPS  +KELIENS+DA ++R++  I  GG    +I DNG
Sbjct: 1   MTIKILPPRLANQIAAGEVVERPSSVVKELIENSIDAGATRIDIDIEKGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +A+ RH TSK++  DD   I + GFRGEAL SI +VS LT  SR       
Sbjct: 61  SGVEKDQLGLALSRHATSKLATLDDLEAIDSLGFRGEALASISSVSRLTFTSRTQAQTEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            Q    G  +   ++P A   GT VEV DLFF  PAR  FL++++ E N I ++++R+A+
Sbjct: 121 WQAYAEGRDMQVKIKPAAHPIGTTVEVVDLFFNTPARRKFLRTDKTEFNHIDELVKRIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           +   +  T              ST      R++ +   +F+ N + L+ + ++I L G+ 
Sbjct: 181 SRFDLQVTLKHNGKVIRSYRPASTVEQQERRVASITSTNFMANCMALDCEHSDIKLWGWI 240

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G+P  N    +  Y ++NGR ++DK I   +R AY E   +   P  VL +E+  R+VDV
Sbjct: 241 GLPHDNAPM-DVQYSYVNGRMMRDKLINHALRQAYEEATGIAAPPAYVLFIEVSVREVDV 299

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF    ++ +FI Q + KAI +    +       +  +       +  +  
Sbjct: 300 NVHPAKHEVRFHQARLVHDFIFQGVFKAITEGISPSMPAAELPVQEAI--SYPGQAPITS 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              +   T E   +      + D   +   + +   D +       Y +           
Sbjct: 358 NGNASEQTTEHGMVHAGIADSADYNVNASISTAAYGDVMPMQNKHGYGVTDKRQGSTSAT 417

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
             S       + D+ +A     +  + Q   +     Q         + +G         
Sbjct: 418 SSSYAQQRQYMPDKPSAGAIKQYNHLLQPSKAEITELQQAARNTTTSVNQGRQVASNTQS 477

Query: 478 ED 479
            +
Sbjct: 478 NE 479


>gi|307728546|ref|YP_003905770.1| DNA mismatch repair protein MutL [Burkholderia sp. CCGE1003]
 gi|307583081|gb|ADN56479.1| DNA mismatch repair protein MutL [Burkholderia sp. CCGE1003]
          Length = 690

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 122/336 (36%), Positives = 193/336 (57%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 29  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGARTLRILLDEGGVKRISITDDGCG 88

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +T+ SR  +     +
Sbjct: 89  IPENELTLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAQMTITSRTAEAPHAMR 148

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 149 V---DAQTGVLSPAAGAQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 205

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E +  + + G  G+P
Sbjct: 206 DVAISVLHNGKAVEHWNASEPP----VRVAKILGETFATAHLPLDESAGPLAIYGCAGLP 261

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG ++Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 262 TASRGRSDQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 321

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 322 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 357



 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 125/251 (49%), Gaps = 2/251 (0%)

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
              Q  A    L     +   T +   L E R S  ++  S     S    P   + A  
Sbjct: 440 PVAQPLAFYDALFGRKDTQAGTSQAATLFEARDSAAEV--SSPYNPSAPYAPPAFNPADD 497

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       I  Q LL P+ +
Sbjct: 498 QPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKNALADRSIAVQPLLIPQTM 557

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                E   + E    L  LG       P  +AIR +PA+L   ++  L R ++ ++   
Sbjct: 558 QADAVEIGTVEEERATLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLSDLHAY 617

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L
Sbjct: 618 GGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQL 677

Query: 584 KLSDIEKLFGR 594
            L+D+++LF R
Sbjct: 678 TLADLDRLFMR 688


>gi|32475085|ref|NP_868079.1| DNA mismatch repair protein [Rhodopirellula baltica SH 1]
 gi|32445625|emb|CAD75626.1| DNA mismatch repair protein [Rhodopirellula baltica SH 1]
          Length = 705

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 203/372 (54%), Gaps = 8/372 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L   ++NQIAAGE+IERP+  +KEL+ENS+DA S+R+E  + GGG    +I+D+G G
Sbjct: 15  IRQLPAHLVNQIAAGEVIERPASVVKELLENSIDAGSTRIELSLEGGGVELIRISDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT+E++P+AV  H TSK+ DD    ++ T GFRGEAL SI +VS +T+ SR    + G Q
Sbjct: 75  MTAEQLPLAVTSHATSKLPDDESLFHVGTLGFRGEALASIASVSQMTIRSRAEGQDGGCQ 134

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  I +  P     GT++EVR+LFF  P R  FLK+ Q E   I +   R+A+A P
Sbjct: 135 IDIRGGVIETPGPCGCPVGTVIEVRNLFFNTPVRRKFLKTPQTERGHIVEAFTRLALANP 194

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           KV F         + +   +   +    I    G +     + +  +   + + GY   P
Sbjct: 195 KVHFVLRNGDKEMFDLLPTTRWADR---IESFFGTEISEALIPIENQDETVQISGYACDP 251

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + +RGN    Y+F+NGR ++D+ +   +  AY   + +GR+PV  L + +    +DVNVH
Sbjct: 252 SVSRGNNRMQYLFLNGRHIRDRALQHALGEAYRGMLMVGRHPVCFLRMRMPADMIDVNVH 311

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           PAK  +RF +   + + ++Q++++     +      S+ +   M     +   P++ +  
Sbjct: 312 PAKLEVRFTDSGRVYSRLLQTLRQRFLSTDMTHRVGSNPVPAPMSEEEQRQTVPESVMGM 371

Query: 358 YATSLTNTQEKL 369
               +   ++ +
Sbjct: 372 RPNEVDQQRQSV 383



 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
           M +      +P T  P  A+ + + +     +   ++  D   + +   ++    +   +
Sbjct: 433 MTAPSAPLASPNTWSPGSASGIDSQRPSTAAEGIEMTPWDGDNAGESNANDSGTTISPHD 492

Query: 401 ATH------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM--RQDFNSTKI 452
           A+         +     Q+HQ Y+++Q   G+V++DQHA HER+++E++  +       +
Sbjct: 493 ASQSAGVPTPSVSHLGFQVHQRYLVTQDEKGMVVIDQHALHERVLYERVCQKVLHEDASL 552

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL PE + L   E A  +E  + L R+G++ E FG   I I+  PA+L  K    +
Sbjct: 553 EAQQLLVPEPVSLTPAERAAALEVKDTLSRIGLEIEDFGGETILIQSYPAMLPNKPPADM 612

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           LR +++ ++ +      +D + ++L+T+AC  ++++G  +   E+  LL + +    +  
Sbjct: 613 LRTVLESVMGAGRDPNPKDLLNHLLSTVACKAAVKAGDPLSPEEITSLLEQKDLYQETHH 672

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRPT +     +++++FGR
Sbjct: 673 CPHGRPTALFFSRDELDRMFGR 694


>gi|327542505|gb|EGF28980.1| DNA mismatch repair protein MutL [Rhodopirellula baltica WH47]
          Length = 705

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 203/372 (54%), Gaps = 8/372 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L   ++NQIAAGE+IERP+  +KEL+ENS+DA S+R+E  + GGG    +I+D+G G
Sbjct: 15  IRQLPAHLVNQIAAGEVIERPASVVKELLENSIDAGSTRIELSLEGGGVELIRISDDGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT+E++P+AV  H TSK+ DD    ++ T GFRGEAL SI +VS +T+ SR    + G Q
Sbjct: 75  MTAEQLPLAVTSHATSKLPDDESLFHVGTLGFRGEALASIASVSQMTIRSRAEGQDGGCQ 134

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I I G  I +  P     GT++EVR+LFF  P R  FLK+ Q E   I +   R+A+A P
Sbjct: 135 IDIRGGVIETPGPCGCPVGTVIEVRNLFFNTPVRRKFLKTPQTERGHIVEAFTRLALANP 194

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           KV F         + +   +   +    I    G +     + +  +   + + GY   P
Sbjct: 195 KVHFVLRNGDKEMFDLLPTTRWADR---IESFFGTEISEALIPIENQDETVQITGYACDP 251

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + +RGN    Y+F+NGR ++D+ +   +  AY   + +GR+PV  L + +    +DVNVH
Sbjct: 252 SVSRGNNRMQYLFLNGRHIRDRALQHALGEAYRGMLMVGRHPVCFLRMRMPADMIDVNVH 311

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           PAK  +RF +   + + ++Q++++     +      S+ +   M     +   P++ +  
Sbjct: 312 PAKLEVRFTDSGRVYSRLLQTLRQRFLSTDMTHRVGSNPVPAPMSEEEQRQTVPESVMGM 371

Query: 358 YATSLTNTQEKL 369
               +   ++ +
Sbjct: 372 RPNEVDQQRQSV 383



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 131/262 (50%), Gaps = 8/262 (3%)

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
           M +      +P T  P  A+ + + +     +   ++  D   + +   ++    +   +
Sbjct: 433 MTAPSAPLASPNTWSPGSASGIDSQRPSTAAEGIEMTPWDGDNAGESNANDSGTTISPHD 492

Query: 401 ATH------YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM--RQDFNSTKI 452
           A+         +     Q+HQ Y+++Q   G+V++DQHA HER+++E++  +       +
Sbjct: 493 ASQSAGVPTPSVSHLGFQVHQRYLVTQDEKGMVVIDQHALHERVLYERICQKVLHEDASL 552

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            +Q LL PE + L   E A  +E  + L R+G++ E FG   I I+  PA+L  K    +
Sbjct: 553 EAQQLLVPEPVSLTPAERAAALEVKDTLSRIGLEIEDFGGETILIQSYPAMLPNKPPADM 612

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           LR +++ ++ +      +D + ++L+T+AC  ++++G  +   E+  LL + +    +  
Sbjct: 613 LRTVLESVMGAGRDPNPKDLLNHLLSTVACKAAVKAGDPLSPEEITSLLEQKDLYQETHH 672

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRPT +     +++++FGR
Sbjct: 673 CPHGRPTALFFSRDELDRMFGR 694


>gi|293556851|ref|ZP_06675412.1| DNA mismatch repair protein MutL [Enterococcus faecium E1039]
 gi|291600935|gb|EFF31226.1| DNA mismatch repair protein MutL [Enterococcus faecium E1039]
          Length = 702

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 136/496 (27%), Positives = 239/496 (48%), Gaps = 19/496 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
            A +   PK  +SL   +E    F++E + +  D +        E+     E   T+ + 
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENYSGFSEENTTYPEK 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                      + +     +   ++         EK  ++     +  +  +  E + L 
Sbjct: 420 TAKTVDKFGENVDNFVEKTVEKSEKKEFPIVDNMEKTNEEQADKSVEEEEQIYEEELTLH 479

Query: 467 EGECALIMEHDEDLHR 482
                    +D+ L +
Sbjct: 480 PE-FDFTQGNDKTLEQ 494



 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +    +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTGNV-SVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLARCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|293567846|ref|ZP_06679187.1| DNA mismatch repair protein MutL [Enterococcus faecium E1071]
 gi|291589431|gb|EFF21238.1| DNA mismatch repair protein MutL [Enterococcus faecium E1071]
          Length = 702

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 136/496 (27%), Positives = 238/496 (47%), Gaps = 19/496 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
            A +   PK  +SL   +E    F++E + +  D +        E+     E   T+ + 
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENYSGFSEENTTYPEK 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                      + +     +   ++         EK  ++     +     +  E + L 
Sbjct: 420 TAKTVDKFGENVDNFVEKTVEKSEKKEFPIVDNMEKTNEEQADKSVEEDEKIYEEELTLH 479

Query: 467 EGECALIMEHDEDLHR 482
                    +D+ L +
Sbjct: 480 PE-FDFTQGNDKTLEQ 494



 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLARCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|294619659|ref|ZP_06699077.1| DNA mismatch repair protein MutL [Enterococcus faecium E1679]
 gi|291594096|gb|EFF25552.1| DNA mismatch repair protein MutL [Enterococcus faecium E1679]
          Length = 702

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 136/496 (27%), Positives = 238/496 (47%), Gaps = 19/496 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
            A +   PK  +SL   +E    F++E + +  D +        E+     E   T+ + 
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENYSGFSEENTTYPEK 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                      + +     +   ++         EK  ++     +     +  E + L 
Sbjct: 420 TAKTVDKFGENVDNFVEKTVEKSEKKEFPVVDNMEKTNEEQADKSVEEDEKIYEEELTLH 479

Query: 467 EGECALIMEHDEDLHR 482
                    +D+ L +
Sbjct: 480 PE-FDFTQGNDKTLEQ 494



 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLARCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|293570768|ref|ZP_06681818.1| DNA mismatch repair protein MutL [Enterococcus faecium E980]
 gi|291609240|gb|EFF38512.1| DNA mismatch repair protein MutL [Enterococcus faecium E980]
          Length = 702

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 207/370 (55%), Gaps = 7/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   + N G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEENQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVLEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ +L +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAILEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +IQKA++++ +  S+  + +          PKT   +  
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQ--PKTEQIEID 357

Query: 360 TSLTNTQEKL 369
            S    +EK 
Sbjct: 358 LSYAFEEEKP 367



 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLAQCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|257893265|ref|ZP_05672918.1| DNA mismatch repair protein [Enterococcus faecium 1,231,408]
 gi|257829644|gb|EEV56251.1| DNA mismatch repair protein [Enterococcus faecium 1,231,408]
          Length = 702

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 206/370 (55%), Gaps = 7/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVMEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PTIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ +L +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAILEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +IQKA++++ +  S+  + +          PKT   +  
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQ--PKTEQIEID 357

Query: 360 TSLTNTQEKL 369
            S    +EK 
Sbjct: 358 LSYAFEEEKP 367



 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 114/248 (45%), Gaps = 2/248 (0%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQL 406
           DNA +T+  +   SL   ++    +       D    +D T  +    +E E+    +  
Sbjct: 451 DNAKETNKEQIDISLEEDEQIYEEELTLHPEFDFTHGNDKTLEQAIKKLETETPVQRFPQ 510

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q LL P ++D  
Sbjct: 511 LEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQELLVPFVLDYP 570

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             +   + E    L   GI  E FG N+  +R  P          ++R++ID ++ +  +
Sbjct: 571 NSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMIDMLLTTG-S 629

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            +++   E     M+C  SI++   +   +   LL+++ +  N   C HGRP  I    S
Sbjct: 630 VSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLAQCENPFNCPHGRPVLIHFTNS 689

Query: 587 DIEKLFGR 594
           D+E++F R
Sbjct: 690 DMERMFKR 697


>gi|187922756|ref|YP_001894398.1| DNA mismatch repair protein [Burkholderia phytofirmans PsJN]
 gi|187713950|gb|ACD15174.1| DNA mismatch repair protein MutL [Burkholderia phytofirmans PsJN]
          Length = 687

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 9/347 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGARSLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +T+ SR        +
Sbjct: 90  IPENELVLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAQMTITSRTADAAHAVR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +         + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 150 VDADT---GVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E +  + + G  G+P
Sbjct: 207 DVAISVLHNGKAIEHWNASEPP----VRVAKILGETFATAHLPLDESAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGERYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +    
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLEP 369



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 125/251 (49%), Gaps = 2/251 (0%)

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
              Q  A    L     + T T E   L E R S  +     + +          ++   
Sbjct: 437 PVAQPLAFYDALFGRKDTNTGTAEGATLFEARDSAAESPSPYNASAPYPAPAFHAAD--D 494

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       I  Q LL P+ +
Sbjct: 495 QPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKNALADRTIAVQPLLIPQSM 554

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                E   + E  + L  LG       P  +AIR +PA+L   ++  L R ++ ++   
Sbjct: 555 QADPIEIGTVEEERDTLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLSDLHAY 614

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L
Sbjct: 615 GGSRVLTERQHEMLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQL 674

Query: 584 KLSDIEKLFGR 594
            LSD+++LF R
Sbjct: 675 TLSDLDRLFMR 685


>gi|69248278|ref|ZP_00604702.1| DNA mismatch repair protein [Enterococcus faecium DO]
 gi|257878802|ref|ZP_05658455.1| DNA mismatch repair protein [Enterococcus faecium 1,230,933]
 gi|257881440|ref|ZP_05661093.1| DNA mismatch repair protein [Enterococcus faecium 1,231,502]
 gi|257890661|ref|ZP_05670314.1| DNA mismatch repair protein [Enterococcus faecium 1,231,410]
 gi|258615127|ref|ZP_05712897.1| DNA mismatch repair protein [Enterococcus faecium DO]
 gi|293563775|ref|ZP_06678214.1| DNA mismatch repair protein MutL [Enterococcus faecium E1162]
 gi|294621200|ref|ZP_06700385.1| DNA mismatch repair protein MutL [Enterococcus faecium U0317]
 gi|314938826|ref|ZP_07846097.1| DNA mismatch repair protein [Enterococcus faecium TX0133a04]
 gi|314943632|ref|ZP_07850386.1| DNA mismatch repair protein [Enterococcus faecium TX0133C]
 gi|314948711|ref|ZP_07852084.1| DNA mismatch repair protein [Enterococcus faecium TX0082]
 gi|314952161|ref|ZP_07855179.1| DNA mismatch repair protein [Enterococcus faecium TX0133A]
 gi|314991865|ref|ZP_07857322.1| DNA mismatch repair protein [Enterococcus faecium TX0133B]
 gi|314996578|ref|ZP_07861613.1| DNA mismatch repair protein [Enterococcus faecium TX0133a01]
 gi|35367173|gb|AAN85559.1| MutL [Enterococcus faecium]
 gi|35367178|gb|AAN85561.1| MutL [Enterococcus faecium]
 gi|68194463|gb|EAN08963.1| DNA mismatch repair protein [Enterococcus faecium DO]
 gi|257813030|gb|EEV41788.1| DNA mismatch repair protein [Enterococcus faecium 1,230,933]
 gi|257817098|gb|EEV44426.1| DNA mismatch repair protein [Enterococcus faecium 1,231,502]
 gi|257827021|gb|EEV53647.1| DNA mismatch repair protein [Enterococcus faecium 1,231,410]
 gi|291599196|gb|EFF30228.1| DNA mismatch repair protein MutL [Enterococcus faecium U0317]
 gi|291604256|gb|EFF33751.1| DNA mismatch repair protein MutL [Enterococcus faecium E1162]
 gi|313589267|gb|EFR68112.1| DNA mismatch repair protein [Enterococcus faecium TX0133a01]
 gi|313593570|gb|EFR72415.1| DNA mismatch repair protein [Enterococcus faecium TX0133B]
 gi|313595693|gb|EFR74538.1| DNA mismatch repair protein [Enterococcus faecium TX0133A]
 gi|313597669|gb|EFR76514.1| DNA mismatch repair protein [Enterococcus faecium TX0133C]
 gi|313641837|gb|EFS06417.1| DNA mismatch repair protein [Enterococcus faecium TX0133a04]
 gi|313644883|gb|EFS09463.1| DNA mismatch repair protein [Enterococcus faecium TX0082]
          Length = 702

 Score =  346 bits (888), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 206/370 (55%), Gaps = 7/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +IQKA++++ +  S+  + +          PKT   +  
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQ--PKTEQIEID 357

Query: 360 TSLTNTQEKL 369
            S    +EK 
Sbjct: 358 LSYAFEEEKP 367



 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLARCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|257899422|ref|ZP_05679075.1| DNA mismatch repair protein [Enterococcus faecium Com15]
 gi|257837334|gb|EEV62408.1| DNA mismatch repair protein [Enterococcus faecium Com15]
          Length = 702

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 206/370 (55%), Gaps = 7/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVLEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ +L +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAILEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +IQKA++++ +  S+  + +          PKT   +  
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQ--PKTEQIEID 357

Query: 360 TSLTNTQEKL 369
            S    +EK 
Sbjct: 358 LSYAFEEEKP 367



 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLAQCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|257896448|ref|ZP_05676101.1| DNA mismatch repair protein [Enterococcus faecium Com12]
 gi|257833013|gb|EEV59434.1| DNA mismatch repair protein [Enterococcus faecium Com12]
          Length = 702

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 127/394 (32%), Positives = 211/394 (53%), Gaps = 18/394 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLLLKGGEVMEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PTIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ +L +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAILEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTND 380
            A +   PK  +SL   +E    F++E R +  D
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPRSTFVD 393



 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E+    +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 ETPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   G+  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGVYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLAQCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|227550810|ref|ZP_03980859.1| DNA mismatch repair protein MutL [Enterococcus faecium TX1330]
 gi|293377535|ref|ZP_06623730.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecium PC4.1]
 gi|227180047|gb|EEI61019.1| DNA mismatch repair protein MutL [Enterococcus faecium TX1330]
 gi|292643850|gb|EFF61965.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecium PC4.1]
          Length = 702

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 127/394 (32%), Positives = 211/394 (53%), Gaps = 18/394 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLLLKGGEVMEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PTIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ +L +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAILEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTND 380
            A +   PK  +SL   +E    F++E R +  D
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPRSTFVD 393



 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E+    +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 ETPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   G+  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGVYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLAQCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|91781911|ref|YP_557117.1| DNA mismatch repair protein [Burkholderia xenovorans LB400]
 gi|91685865|gb|ABE29065.1| DNA mismatch repair protein MutL [Burkholderia xenovorans LB400]
          Length = 688

 Score =  346 bits (887), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 122/355 (34%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 32  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGAQSLRILLDEGGVKRISITDDGCG 91

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +T+ SR        +
Sbjct: 92  IPENELALALMRHATSKIRSLAELEAVATLGFRGEALASIASVAQMTITSRTADAAHAVR 151

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 152 V---DAQTGVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 208

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E +  + + G  G+P
Sbjct: 209 DVAISVLHNGKAVEHWNASEPP----VRVAKILGDTFATAHLPLDESAGPLAVYGCAGLP 264

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 265 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGERYPSYVLFLDLPPEAVDVNVH 324

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +      +     
Sbjct: 325 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLAPSVSGPASF 379



 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 2/251 (0%)

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
              Q  A    L     +   T E   L E R S  +     + +          ++   
Sbjct: 438 PVAQPLAFYDALFGRKDTNAGTAEGATLFEARDSAAEAPSPYNASAPYPAPAFHAAD--E 495

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
             LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       I  Q LL P+ +
Sbjct: 496 QPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKNALADRTIAVQPLLIPQSM 555

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                E   + E  + L  LG       P  +AIR +PA+L   ++  L R ++ ++   
Sbjct: 556 QADPVEIGTVEEERDTLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLSDLHAF 615

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L
Sbjct: 616 GGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQL 675

Query: 584 KLSDIEKLFGR 594
            LSD+++LF R
Sbjct: 676 TLSDLDRLFMR 686


>gi|134280054|ref|ZP_01766765.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 305]
 gi|134248061|gb|EBA48144.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 305]
          Length = 681

 Score =  345 bits (886), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEVFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|237813666|ref|YP_002898117.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei
           MSHR346]
 gi|237503721|gb|ACQ96039.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei
           MSHR346]
          Length = 681

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|217420447|ref|ZP_03451952.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 576]
 gi|217395859|gb|EEC35876.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 576]
          Length = 681

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|167904120|ref|ZP_02491325.1| DNA mismatch repair protein [Burkholderia pseudomallei NCTC 13177]
          Length = 684

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 487 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 546

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 547 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 606

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 607 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 666

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 667 TWYQLTLGDLDKLFMR 682


>gi|167721057|ref|ZP_02404293.1| DNA mismatch repair protein [Burkholderia pseudomallei DM98]
 gi|167912379|ref|ZP_02499470.1| DNA mismatch repair protein [Burkholderia pseudomallei 112]
          Length = 681

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|126441610|ref|YP_001060275.1| DNA mismatch repair protein [Burkholderia pseudomallei 668]
 gi|126221103|gb|ABN84609.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 668]
          Length = 681

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|76810303|ref|YP_334679.1| DNA mismatch repair protein [Burkholderia pseudomallei 1710b]
 gi|254191608|ref|ZP_04898111.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261791|ref|ZP_04952845.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1710a]
 gi|76579756|gb|ABA49231.1| DNA mismatch repair protein [Burkholderia pseudomallei 1710b]
 gi|157939279|gb|EDO94949.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei Pasteur
           52237]
 gi|254220480|gb|EET09864.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1710a]
          Length = 681

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|254180773|ref|ZP_04887371.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1655]
 gi|184211312|gb|EDU08355.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1655]
          Length = 681

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|53720423|ref|YP_109409.1| DNA mismatch repair protein [Burkholderia pseudomallei K96243]
 gi|53725794|ref|YP_103873.1| DNA mismatch repair protein [Burkholderia mallei ATCC 23344]
 gi|67642139|ref|ZP_00440900.1| DNA mismatch repair protein MutL [Burkholderia mallei GB8 horse 4]
 gi|121598418|ref|YP_991863.1| DNA mismatch repair protein [Burkholderia mallei SAVP1]
 gi|124383705|ref|YP_001027070.1| DNA mismatch repair protein [Burkholderia mallei NCTC 10229]
 gi|126451135|ref|YP_001081721.1| DNA mismatch repair protein [Burkholderia mallei NCTC 10247]
 gi|126454824|ref|YP_001067534.1| DNA mismatch repair protein [Burkholderia pseudomallei 1106a]
 gi|166998837|ref|ZP_02264689.1| DNA mismatch repair protein MutL [Burkholderia mallei PRL-20]
 gi|167740028|ref|ZP_02412802.1| DNA mismatch repair protein [Burkholderia pseudomallei 14]
 gi|167817246|ref|ZP_02448926.1| DNA mismatch repair protein [Burkholderia pseudomallei 91]
 gi|167895727|ref|ZP_02483129.1| DNA mismatch repair protein [Burkholderia pseudomallei 7894]
 gi|167920334|ref|ZP_02507425.1| DNA mismatch repair protein [Burkholderia pseudomallei BCC215]
 gi|226194259|ref|ZP_03789858.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei
           Pakistan 9]
 gi|242316948|ref|ZP_04815964.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1106b]
 gi|254178910|ref|ZP_04885564.1| DNA mismatch repair protein MutL [Burkholderia mallei ATCC 10399]
 gi|254202582|ref|ZP_04908945.1| DNA mismatch repair protein MutL [Burkholderia mallei FMH]
 gi|254207920|ref|ZP_04914270.1| DNA mismatch repair protein MutL [Burkholderia mallei JHU]
 gi|254299137|ref|ZP_04966587.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 406e]
 gi|254355938|ref|ZP_04972216.1| DNA mismatch repair protein MutL [Burkholderia mallei 2002721280]
 gi|52210837|emb|CAH36824.1| putative DNA mismatch repair protein [Burkholderia pseudomallei
           K96243]
 gi|52429217|gb|AAU49810.1| mismatch repair protein MutL [Burkholderia mallei ATCC 23344]
 gi|121227228|gb|ABM49746.1| DNA mismatch repair protein MutL [Burkholderia mallei SAVP1]
 gi|124291725|gb|ABN00994.1| DNA mismatch repair protein MutL [Burkholderia mallei NCTC 10229]
 gi|126228466|gb|ABN92006.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1106a]
 gi|126244005|gb|ABO07098.1| DNA mismatch repair protein MutL [Burkholderia mallei NCTC 10247]
 gi|147746829|gb|EDK53906.1| DNA mismatch repair protein MutL [Burkholderia mallei FMH]
 gi|147751814|gb|EDK58881.1| DNA mismatch repair protein MutL [Burkholderia mallei JHU]
 gi|148024913|gb|EDK83091.1| DNA mismatch repair protein MutL [Burkholderia mallei 2002721280]
 gi|157809100|gb|EDO86270.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 406e]
 gi|160694824|gb|EDP84832.1| DNA mismatch repair protein MutL [Burkholderia mallei ATCC 10399]
 gi|225933724|gb|EEH29712.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei
           Pakistan 9]
 gi|238523230|gb|EEP86670.1| DNA mismatch repair protein MutL [Burkholderia mallei GB8 horse 4]
 gi|242140187|gb|EES26589.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei 1106b]
 gi|243064923|gb|EES47109.1| DNA mismatch repair protein MutL [Burkholderia mallei PRL-20]
          Length = 684

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 487 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 546

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 547 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 606

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 607 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 666

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 667 TWYQLTLGDLDKLFMR 682


>gi|320103230|ref|YP_004178821.1| DNA mismatch repair protein MutL [Isosphaera pallida ATCC 43644]
 gi|319750512|gb|ADV62272.1| DNA mismatch repair protein MutL [Isosphaera pallida ATCC 43644]
          Length = 699

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/410 (31%), Positives = 212/410 (51%), Gaps = 10/410 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LS  +INQIAAGE++ERP+  +KEL+EN++DA + R+E  +  GGK   ++ DNG G
Sbjct: 4   IRELSPSVINQIAAGEVVERPASVVKELLENAIDAGADRIEIAVERGGKDLIRVVDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++P+A + H TSK+   DD   I T GFRGEAL +I  +S +   SR  +  TG +
Sbjct: 64  IAPDDLPLAFRPHATSKLREADDLQRIATLGFRGEALAAIAEISKVCCESRTAEAETGFR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G +  +V P +   GTI+EVR LFF  P R  FLKS+  E   + +++ R+A+A+P
Sbjct: 124 LRIDGGRAGAVEPCSCPVGTIMEVRHLFFNTPVRRTFLKSDATEAGHVAEMVTRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V FT  +     + +   +      +RI+ + G +  +  + +      + L+G+   P
Sbjct: 184 SVHFTSRSSGKVVFDLPATTC---LTDRIAALFGRELADQLIGVEHDVPGVGLRGFVSHP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           + +R ++   Y+F+NGR V+D+ +   +  AY   + +GRYPV  L LE+   QVDVNVH
Sbjct: 241 SHSRSSSKFQYLFLNGRYVRDRSLQHALAEAYRGLLMVGRYPVAFLNLEVPLDQVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RFR   +I + +  +I++A  K  +                  AP    P  A+
Sbjct: 301 PTKIEVRFREAHLIYSALYSAIKQAFLKTDLHAKLQTRVTAFQVGSTSVAPALDWPTRAS 360

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
                    F      + + +      +    ++ V+    T    G + 
Sbjct: 361 -----VSDWFSVPEEAAGSSVAAPAPCSSGSTSEAVDSLRPTRQAWGWSW 405



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/183 (34%), Positives = 108/183 (59%)

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q H +Y++++T +GL+++DQHA HER++FE+ ++      + SQ LL PE ++L   E A
Sbjct: 516 QFHDSYLVAETPEGLMVIDQHALHERILFEEFKERLERGGVESQRLLIPETVELTPAEAA 575

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            + E  + L +LGI+   FG + + +  +PA L      +L+RD+ D ++      T + 
Sbjct: 576 ALTERLDLLAKLGIELSGFGGSTVLVHALPAQLKHVEADRLVRDLADHLLQRPLPPTPEG 635

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            + ++L  MAC  +I++G+K+   E++ LL       +S  C HGRPT + L  SD+EK 
Sbjct: 636 LMMDLLNMMACKAAIKAGQKLSPDEIDALLERRHLARDSHHCPHGRPTVLLLTKSDLEKQ 695

Query: 592 FGR 594
           FGR
Sbjct: 696 FGR 698


>gi|294614621|ref|ZP_06694525.1| DNA mismatch repair protein MutL [Enterococcus faecium E1636]
 gi|291592523|gb|EFF24128.1| DNA mismatch repair protein MutL [Enterococcus faecium E1636]
          Length = 702

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 136/496 (27%), Positives = 237/496 (47%), Gaps = 19/496 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP   +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPVSVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
            A +   PK  +SL   +E    F++E + +  D +        E+     E   T+ + 
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENYSGFSEENTTYPEK 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                      + +     +   ++         EK  ++     +     +  E + L 
Sbjct: 420 TAKTVDKFGENVDNFVEKTVEKSEKKEFPIVDNMEKTNEEQADKSVEEDEKIYEEELTLH 479

Query: 467 EGECALIMEHDEDLHR 482
                    +D+ L +
Sbjct: 480 PE-FDFTQGNDKTLEQ 494



 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLARCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|203284131|ref|YP_002221871.1| DNA mismatch repair protein [Borrelia duttonii Ly]
 gi|238690555|sp|B5RL36|MUTL_BORDL RecName: Full=DNA mismatch repair protein mutL
 gi|201083574|gb|ACH93165.1| DNA mismatch repair protein [Borrelia duttonii Ly]
          Length = 611

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 151/619 (24%), Positives = 271/619 (43%), Gaps = 45/619 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L + ++ +IAAGE I+RP   ++EL++N++D+ + ++E  I  GG     ITDNG 
Sbjct: 3   KIKFLDKTLVQKIAAGEAIDRPCSILRELLDNAIDSGADKIEVFIEEGGIRRILITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKI++  D   I T GFRGEAL SI   S+L + S     N+  
Sbjct: 63  GISKEDLKICYLPHTTSKINEEKDLERIQTLGFRGEALSSIAICSNLMITSSTTGENS-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI I        +  +   GT+V+V +LF   PAR  FLK + +ET +   V    A+ +
Sbjct: 122 QIEIENGIEKYFKKQSAINGTMVDVTNLFHNFPARKRFLKKDSIETKMCLKVFEEKAVTH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-ELNEKSNEITLQGYTG 238
           P + F  S  K  +          +  +R+  V GE   NN   ++  + + + ++ +  
Sbjct: 182 PGIDFKLSVNKELKKVYF----KESLADRVQSVYGEIIENNKFGKIEAEYDHVKMKIFFA 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F+R +     +F+N R +++K +  +I   ++  +    +PV  L LEID   VD N
Sbjct: 238 PPNFSRKDRRNIKIFVNRRPIEEKSLSESIINGHSRILTYKNFPVCYLFLEIDTTHVDFN 297

Query: 299 VHPAKSYIRFRN----PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +HP K  +RF N    P  I N I +   +   +      +V+ K+ +++      P+  
Sbjct: 298 IHPQKKEVRFFNLPFLPKQISNNINEFFDREKQEILQDYHNVIIKRQLTNDAHLLHPEND 357

Query: 355 L--PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC-- 410
           L    + T      E L L + + +    +  D   +        +     +   I    
Sbjct: 358 LTNSNFKTYEITQDEALILDKPKNNKVTNIIEDKVKFEGQIPQKYKPSFKQHIQKIFIKT 417

Query: 411 -------------------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                               Q+   ++I +  + +  +DQHA HE++I++ +    NS K
Sbjct: 418 SKMPNNFQKSTQTNEFKYMGQLFSEFLIVENANEIYFIDQHALHEKIIYQTL---INSEK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E     E    ++    E+  ++ I  ++       +  IP I +K     
Sbjct: 475 TIQKLLVPIEFQVECEDTDKILTSELEEYKKIDIIVKKIQNQTYRLESIPNICNKYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              +II +   +  +  +      + AT+AC  +I+    +       L+ E        
Sbjct: 532 ---NIIIQFFKTRKSKIIDSLETELYATLACRQAIKCNDTISLEFSQFLINEFFNLKL-K 587

Query: 572 QCNHGRPTFIKLKLSDIEK 590
            C HGR  + K+   ++EK
Sbjct: 588 HCPHGRKIYHKITKFELEK 606


>gi|110669042|ref|YP_658853.1| DNA mismatch repair protein MutL [Haloquadratum walsbyi DSM 16790]
 gi|109626789|emb|CAJ53257.1| DNA mismatch repair protein MutL [Haloquadratum walsbyi DSM 16790]
          Length = 593

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 158/623 (25%), Positives = 271/623 (43%), Gaps = 78/623 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L +++I  +AA E+I RP+  + ELIEN+LDA + R++  + G G     + DNG 
Sbjct: 13  TICRLDDEMIAAVAAAEVITRPADVVAELIENALDAGADRIDISVTGDGTDQLVVRDNGQ 72

Query: 62  GMTSEEIPMAVQRHCTSKI-------------SDD--FSNIHTFGFRGEALPSIGAVSHL 106
           GM+ ++  +AVQRH TSKI             + D     + T GFRGEAL SI  V  L
Sbjct: 73  GMSKQDAILAVQRHTTSKINATKQAAGEITPTTQDGIIPPVETLGFRGEALASIATVGTL 132

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
            + +       G  I  +G    SV P     GT + V +LF  +PAR   L S Q E  
Sbjct: 133 EIETN-NGGPCGTMIKTNGPTAESVEPTGRACGTTITVNNLFEAVPARQEALASSQAEFA 191

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKM----NFQSTNGNFPERISQVIGEDFINNAV 222
            I+ ++   A+ +P  + +     ++           +  G +   I+           +
Sbjct: 192 RISKLVSHYALLHPMTAISLQHDGNDVLSTSGDGYTSALLGVYNREIAAQSTTIESTQTI 251

Query: 223 ELNEKSNEITLQ------GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
           +++ KS++IT        G    PT  R N N   + I+GR V ++ +++ I   Y++ +
Sbjct: 252 DIDTKSSQITQTATIEINGVLVHPTVTRANRNAVSIAIDGRPVNNETLMAAIMNGYSDLL 311

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P G++P+  + + +     D NVHP K  +R +   +I + I  S+  A++         
Sbjct: 312 PGGQHPIAAVTVSLPGSLTDHNVHPRKQTVRIQTADLIADMIETSVSDALSTVDQRQIDT 371

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           LS ++  S                             ++ S+  +  +D           
Sbjct: 372 LSTELDVSLE----------------------ALTDADQTSSAAVADAD----------- 398

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                          Q  + Y++    D L+IVDQHAAHER+ +E++    + T + +  
Sbjct: 399 ------------VLGQFQELYLLCSLDDTLLIVDQHAAHERITYERLCATVDET-LPTVA 445

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP-----NAIAIREIPAILSKKNIPQ 511
           +  P  + L  G+ + +    + L   G +  +         AI +  +PA L +   P 
Sbjct: 446 IDPPVTVSLTPGQYSTLDCITDQLMTYGYEYTKRDDTQNTHKAINVHSVPAPLGQPAAPV 505

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
            +RD ID + +  T     +R  + LA +AC+ S+R+G  + S   + LL ++    N  
Sbjct: 506 SIRDAIDALQNDDTPSVAHER-TDTLAELACHQSLRAGEILDSPAADELLNQLGACENPY 564

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRP  + +   D+ + FGR
Sbjct: 565 ACPHGRPVVLTIDEMDLVRAFGR 587


>gi|291522252|emb|CBK80545.1| DNA mismatch repair protein MutL [Coprococcus catus GD/7]
          Length = 698

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 124/359 (34%), Positives = 187/359 (52%), Gaps = 6/359 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I  L    IN+IAAGE++ERPS  IKEL+EN++DA++S +   I  GG +  ++TDN
Sbjct: 1   MKSIHLLDSDTINKIAAGEVVERPSSVIKELVENAIDAKASAITIEIKEGGIAMMRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  ++I  A  RH TSKI    D   + + GFRGEAL SI +VS + L+++  +   
Sbjct: 61  GGGIDRDDIKTAFVRHATSKIETAMDLMTVGSLGFRGEALSSIASVSQIELITKVHRELL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G +  S   +    GT + VR+LF+  PAR  FLK+   E   I D+  R+A+
Sbjct: 121 GVRYCIDGGEEKSCDDIGCPDGTTIIVRNLFYNTPARRKFLKTAATEAAYINDLAGRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P VSF F     NR      S NGN  + I Q+ G D     +E++ +     + G+ 
Sbjct: 181 SHPDVSFKFINNNQNRLH---TSGNGNLRDIIYQIYGRDVTGQLLEVDVQGKLCHVTGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN +    FINGR ++   I   I  AY   + + +YP     +E+DP  +DV
Sbjct: 238 GKPILSRGNRSWENYFINGRYIKSNIITKAIEDAYKTFVMIHKYPFTAFHIEVDPALIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           NVHP K  +RF     +   I   I+  +  + +  S  L  +  ++  +        P
Sbjct: 298 NVHPRKMELRFNQNEAVYQEIYDIIRAVLEHRELIPSISLEDQKKANGKEKEKESGPEP 356



 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 65/284 (22%), Positives = 120/284 (42%), Gaps = 26/284 (9%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                + +  S+F ++     H   +  ++T +  KL  + NR   ++       T    
Sbjct: 416 PYIAPTGQSGSAFVRETPTAYH---HKETMTQSTSKLQDENNRAVMSETTEEQKKTEVTL 472

Query: 393 NDPVEESEATHYQ----------------------LGIACAQIHQNYIISQTTDGLVIVD 430
           ++  E++   H                              Q+   Y + +    L I+D
Sbjct: 473 SEAAEKAPKPHMPIVGEQMQLFGEDERLLDEKARARHRLIGQVFDTYWMVEYDGKLFIID 532

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE++++EK+ + F+   +  Q L  P I+ L   E  +  ++ +    LG + E F
Sbjct: 533 QHAAHEKVLYEKLMKAFSQKALQKQMLSPPVILTLSMQEENIYKQYADYFAELGFEIELF 592

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G    A+R +P  L   N   +  +++D + + S         ++I ATMAC  +++   
Sbjct: 593 GGREYAVRGVPLQLFGMNARDIFIEVLDSVTEESRRLDGSAITDHI-ATMACKAAVKGNN 651

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           K+   E + L+ ++ +  N   C HGRPT I L   ++EK F R
Sbjct: 652 KLSFKEADTLIEQLLQAKNPYTCPHGRPTIISLSKYELEKKFKR 695


>gi|167580702|ref|ZP_02373576.1| DNA mismatch repair protein [Burkholderia thailandensis TXDOH]
          Length = 682

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 9/347 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + + E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR   +    +
Sbjct: 90  IPAAELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDDAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVLAPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +    
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLSP 369



 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/198 (36%), Positives = 110/198 (55%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           + +      LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      +  QT
Sbjct: 483 DPAMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTVAVQT 542

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           LL P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R +
Sbjct: 543 LLIPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAV 602

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           + ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHG
Sbjct: 603 LADLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHG 662

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+ +L L D++KLF R
Sbjct: 663 RPTWYQLTLGDLDKLFMR 680


>gi|167847146|ref|ZP_02472654.1| DNA mismatch repair protein [Burkholderia pseudomallei B7210]
 gi|254194968|ref|ZP_04901398.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei S13]
 gi|169651717|gb|EDS84410.1| DNA mismatch repair protein MutL [Burkholderia pseudomallei S13]
          Length = 681

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/336 (36%), Positives = 196/336 (58%), Gaps = 9/336 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     I D+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISIADDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 484 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 543

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 544 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 603

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 604 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 663

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 664 TWYQLTLGDLDKLFMR 679


>gi|261207075|ref|ZP_05921764.1| DNA mismatch repair protein [Enterococcus faecium TC 6]
 gi|289565923|ref|ZP_06446363.1| DNA mismatch repair protein mutL [Enterococcus faecium D344SRF]
 gi|260078703|gb|EEW66405.1| DNA mismatch repair protein [Enterococcus faecium TC 6]
 gi|289162296|gb|EFD10156.1| DNA mismatch repair protein mutL [Enterococcus faecium D344SRF]
          Length = 702

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 136/496 (27%), Positives = 237/496 (47%), Gaps = 19/496 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP   +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPVSVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS +TL +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMTLETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +++ G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLSLKGGEVIEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PSIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVVGYGSKLMVGRFPIAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----------SVLSKKMISSFHQD 348
           HP K  +R      +   I  +IQKA++++ +  S               K         
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQPKTEQIEIDLS 359

Query: 349 NAPKTHLPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
            A +   PK  +SL   +E    F++E + +  D +        E+     E   T+ + 
Sbjct: 360 YAFEEEKPKKPSSLNFDRETGTFFVEEPKNTFVDRIVDKSVENVENYSGFSEENTTYPEK 419

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                      + +     +   ++         EK  ++     +     +  E + L 
Sbjct: 420 TAKTVDKFGENVDNFVEKTVEKSEKKEFPIVDNMEKTNEEQADKSVEEDEKIYEEELTLH 479

Query: 467 EGECALIMEHDEDLHR 482
                    +D+ L +
Sbjct: 480 PE-FDFTQGNDKTLEQ 494



 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 EKPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLARCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|291542655|emb|CBL15765.1| DNA mismatch repair protein MutL [Ruminococcus bromii L2-63]
          Length = 705

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 195/380 (51%), Gaps = 6/380 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L + +   IAAGE++ERP+  IKEL+ENS+DA +  +   I  GG +F ++ D+G G
Sbjct: 4   INVLDKHVAELIAAGEVVERPASVIKELVENSIDAGAKNITVEIKNGGTTFMRVADDGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  ++I +A  RH TSK+    D  +I T GFRGEAL SI AVS L L++R      G  
Sbjct: 64  IYRDDIKVAFLRHATSKVKVESDLDSISTLGFRGEALASICAVSRLQLITRNVNEEIGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  S        GT   +RDLF+ IPAR  FLK +  E N ++++I + A+++P
Sbjct: 124 YEIDGGEEQSFDDAGCPVGTTFVIRDLFYNIPARAKFLKKDVSEGNAVSNIIDKTALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++FT+        ++     +G     I  V G+DF    + ++ + + I + GY   P
Sbjct: 184 EIAFTYIKDGK---QVLRTFGDGKLISAIYSVFGKDFAKGLIPVDYQLDAIKVYGYISKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +R N N    FINGR ++ +  +  +  A+  +I +G++P  VL +E+    +DVNVH
Sbjct: 241 EHSRPNRNMQNFFINGRYIKTRTAMVALEEAFKGSIMVGKFPSCVLNIELPCEMIDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKYA 359
           P+K  +RF N   + + I  +++ ++ K      +   K+   +  Q+   P  + P   
Sbjct: 301 PSKLEVRFINERPVFDAIYHAVKSSLMKYDSRKKASFKKETAFNEVQNKFNPFNNAPAIL 360

Query: 360 TSLTNTQEKLFLQENRLSTN 379
                   K    + + +  
Sbjct: 361 NKPVVQSSKNDFVQKQYAKP 380



 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 122/291 (41%), Gaps = 9/291 (3%)

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
           +   I +         +            + +  +  ++    T  P+     +  +++ 
Sbjct: 417 DEAAILSVTKSIDDIKVADISNPFDVFSKQAINKAKEEEKLKSTFKPEILQPTSLVEDEK 476

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG-----IACAQIHQNYIISQTTD 424
              E+    + ++   +       + +E+S+                +    YII++  +
Sbjct: 477 TDTESITDKSPIVSPKEVNVIVSEESIEKSKEPVLVNDNQTSIKYIGEAFDTYIIAEKNN 536

Query: 425 -GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
             ++++D+HAAHER+I+EK++ +  +     Q LL P  + L + E    + + +     
Sbjct: 537 KDILLIDKHAAHERIIYEKLKAEKAAD--YRQILLAPVTVPLGKTEYDAAINNLDMFSDC 594

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           G + E FG + + +R  P  +    I   + ++    I    T    ++++   + +AC 
Sbjct: 595 GFEVEDFGNSTVIVRSSPQYIPAVEIEDCITEM-SGYISQGKTDIFTEKMDWFYSNVACR 653

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +I++G K    E+  +++ +E++P    C HGRP  I L   +IEK FGR
Sbjct: 654 SAIKAGNKSTPEELIGIVKHLEEHPEIKYCPHGRPICIVLTKGEIEKQFGR 704


>gi|73669014|ref|YP_305029.1| DNA mismatch repair protein MutL [Methanosarcina barkeri str.
           Fusaro]
 gi|72396176|gb|AAZ70449.1| DNA mismatch repair protein MutL [Methanosarcina barkeri str.
           Fusaro]
          Length = 692

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/335 (37%), Positives = 197/335 (58%), Gaps = 5/335 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L +  IN+IAAGE+IERP+  +KELI+NS+DA ++ +   +  GGK    + DNG 
Sbjct: 16  KIRLLDKDTINKIAAGEVIERPASVVKELIDNSIDAGATDIRIEVEKGGKRSILVRDNGC 75

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A ++H TSK++  +D + I T GFRGEAL SI AV+ + +++RPP+  TG 
Sbjct: 76  GMDREDALLAYKKHATSKLTRIEDLNTISTMGFRGEALSSITAVAKVEILTRPPEEITGT 135

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K+         PGT V V+DLF+ IPAR  +LKS++ E   ITD + ++A+A 
Sbjct: 136 RIVIHGGKVLETSAAGTTPGTSVNVKDLFYNIPARQKYLKSDRTELAHITDTVMQLALAN 195

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SFT  + +    +    + +    + I  ++G D   + + L  ++ +  + GY   
Sbjct: 196 PHISFTLLSEEKPVIR---NAGSSESFKSIVNLLGPDTARSMLPLEYRTEDFEIFGYISK 252

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R  ++Q ++F+N R V  + I   IR  Y   IP  RYPV VL L ++P +VDVNV
Sbjct: 253 PETTRRESDQIFLFVNTRPVTSRSINKAIREGYYTKIPKERYPVAVLSLIVNPGEVDVNV 312

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K+ +RF     + + +  +I+K +++  ++  
Sbjct: 313 HPRKAEVRFSREKELGDAVTSAIEKVLSENALAPE 347



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
             + ++    +     +    +++     ++      Q+ + YI+++  + LV++DQHAA
Sbjct: 474 EKAGSEEQKFEGINAEKMQKSIQKPNTDSFENLRIIGQVSKLYILAERGEDLVLIDQHAA 533

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
           HER+++E++ +   S     Q L+TP  IDL   E  L+ E+   L   G     FG N 
Sbjct: 534 HERILYEQVLKMKKSR---VQELITPVTIDLTPKEKVLMEEYIPYLEDFGFGISEFGDNT 590

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             +  +P +  +   P+++ DI+ +++ S          E I  T+AC  +I+ G     
Sbjct: 591 YVVTFVPEVFGRLEDPEVIHDIVSDLLASGKVKKDTGISEKICKTLACRAAIKGGAACSP 650

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +M  L+ +++K  N   C HGRPT I     +++++F R
Sbjct: 651 RQMEELIEQLKKAENPYSCPHGRPTVITFTKGELDRMFAR 690


>gi|160880512|ref|YP_001559480.1| DNA mismatch repair protein MutL [Clostridium phytofermentans ISDg]
 gi|160429178|gb|ABX42741.1| DNA mismatch repair protein MutL [Clostridium phytofermentans ISDg]
          Length = 695

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 198/405 (48%), Gaps = 11/405 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +  INQIAAGE++ERP+  +KELIEN++DA ++ V   I  GG SF +ITDNG 
Sbjct: 3   KIALLDQSTINQIAAGEVVERPASVVKELIENAIDAGATAVTAEIKDGGISFIRITDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++IP A  RH TSKI   +D   I + GFRGEAL SI +V+ + L+++     TG 
Sbjct: 63  GIEKDDIPTAFLRHSTSKIQSIEDLLTIGSLGFRGEALSSIASVAQVELVTKTRTAFTGI 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G +  S+  +    GT   VR+LFF  PAR  FLKS   E + I+D++ R+A+++
Sbjct: 123 RYLIEGGEEQSMTEIGCPDGTTFIVRNLFFNTPARRKFLKSAMTEASYISDLMERLAVSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF F         +     N    + I  V G       V +   +  I++ GY G 
Sbjct: 183 PDISFKFINNNK---TVLHTFGNSQLKDIIYHVYGRTIAAEVVTVENGNEHISISGYIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +RGN N    FINGR ++   I   I  AY       +YP   +   I+P  +DVNV
Sbjct: 240 PIISRGNRNYENYFINGRYIKSNIINKAIEEAYRPYSMQHKYPFTAIHFSINPEFIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF N   +    + +I+ A+N   +     L      S  +++  K  +    
Sbjct: 300 HPTKMEVRFHNFEELYQLTLNTIRDALNSTNMIPKVSL------SEEKESIKKEAVSAPE 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
               N ++       R  T D   S     S +   ++  +    
Sbjct: 354 PFEENRRKLEKETRERSHTTDYQVSKGRNVSCNLTQIDPKKEIDP 398



 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 120/305 (39%), Gaps = 10/305 (3%)

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           + P K        T I      ++Q  +        S       ++    +  ++   + 
Sbjct: 390 IDPKKEIDPAIKETEIGRLREVTLQGNLKNIEEQKLSEGDSSYRTAAEHASYMESTYAQN 449

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH---------YQLGIA 409
            T  T +      +E   S      S    + +  + +E+               +    
Sbjct: 450 ETMNTPSISYDIEKETVTSNIAEEISQISLFPQKEEIIEKENLPKELSLLSEEGIRQARI 509

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q  + Y   +  + L I+DQHAAHE++++E   +     +  SQ L  P I+ L   E
Sbjct: 510 IGQAFKTYWFIELENQLYIIDQHAAHEKVLYESTMKRLKEKETMSQQLCPPVILTLNLRE 569

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
              I  H E L  LG + E FG    A+  +PA +      +LL + ID++++   +   
Sbjct: 570 EEAIKTHREFLSMLGFEIEPFGGKEYAVSAVPADMFGLAGERLLIEFIDDLVEE-ISRGT 628

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            D I   +A+++C  +++    +   E N LL+++    N   C HGRP  I +   ++E
Sbjct: 629 PDVILEKIASLSCKAAVKGNYNLSVEEANELLKQLLTLENPFHCPHGRPIIISMTKYELE 688

Query: 590 KLFGR 594
           K F R
Sbjct: 689 KKFKR 693


>gi|167563963|ref|ZP_02356879.1| DNA mismatch repair protein [Burkholderia oklahomensis EO147]
          Length = 350

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/330 (38%), Positives = 195/330 (59%), Gaps = 9/330 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  IKEL+EN+LDA +S +  V+  GG     ITD+G G
Sbjct: 26  IQPLPDQLISQIAAGEVVERPASVIKELVENALDAGASTLRIVLDEGGVKRISITDDGCG 85

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 86  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFVTSRTEDAAHAMR 145

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 146 I---DAQTGVLAPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 202

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E +  + + G  G+P
Sbjct: 203 DVAISVLHNGRAVEHWNASEPAA----RVAKILGEGFATAHLPLDESAGPLAVYGCAGLP 258

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 259 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 318

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           P+K  +RFR+   I  F+  ++Q+A+ +  
Sbjct: 319 PSKIEVRFRDSRSIHQFVFHAVQRALARHA 348


>gi|295675604|ref|YP_003604128.1| DNA mismatch repair protein MutL [Burkholderia sp. CCGE1002]
 gi|295435447|gb|ADG14617.1| DNA mismatch repair protein MutL [Burkholderia sp. CCGE1002]
          Length = 698

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 122/348 (35%), Positives = 194/348 (55%), Gaps = 9/348 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 33  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGAQTLRILLDEGGVKRISITDDGCG 92

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 93  IPENELVLALTRHATSKIRSLAELEAVATLGFRGEALASIASVAQMSITSRTADVPHAVR 152

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 153 I---DAETGVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 209

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E +  + + G  G+P
Sbjct: 210 DVAISVLHNGKAVEHWNASEPPA----RVAKILGDTFATAHLPLDESAGPLAIYGCAGLP 265

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 266 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGERYPSYVLFLDLPPEGVDVNVH 325

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +     
Sbjct: 326 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLEPS 373



 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 118/224 (52%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           L+    ++    P D  +++               LG A  QIH  Y+++Q   GLVIVD
Sbjct: 473 LEARDSASETTSPYDAASFASRPASPAFDATDDQPLGFALGQIHGIYVLAQNRHGLVIVD 532

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            HAAHER+++E+ +       I  Q LL P+ +     E   + E  + L  LG      
Sbjct: 533 MHAAHERILYEQFKNALADHAIAVQPLLIPQTMQADPVEIGTVEEERDTLGALGFDLAVL 592

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
            P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R
Sbjct: 593 SPTTLAIRAVPALLKDADLQALARAVLSDLHAFGGSRVLTERQHELLGTLACHHAVRANR 652

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 653 RLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLADLDRLFMR 696


>gi|160933109|ref|ZP_02080498.1| hypothetical protein CLOLEP_01952 [Clostridium leptum DSM 753]
 gi|156868183|gb|EDO61555.1| hypothetical protein CLOLEP_01952 [Clostridium leptum DSM 753]
          Length = 747

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 202/407 (49%), Gaps = 10/407 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L + +   IAAGE++ERPS  IKEL+ENS+DA ++ +   I  GG ++ ++TDNG 
Sbjct: 3   KIHVLEKHVAELIAAGEVVERPSSVIKELVENSIDAGATTISVEIQRGGIAYMRVTDNGG 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P A  R+ TSK+  ++D   I T GFRGEAL SI AVS +TL++R  +   G 
Sbjct: 63  GIAREDVPKAFLRNATSKVESAEDLDGIGTLGFRGEALASICAVSRVTLLTRTEEELAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G +  ++       G  + VRDLF+  PAR+ FLK +  E N +  V+ R A+++
Sbjct: 123 SYQIEGGEELALEDAGCAKGCTIVVRDLFYNTPARMKFLKKDVSEANAVAGVMDRAALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF F        +      +      I  V G+DF    + ++   N I ++G+   
Sbjct: 183 PEISFRFVRDHK---ETLSTPGDRQLRSCIYAVYGKDFTAGLIPVDYAYNGIKVRGFISK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+  R N +  + FINGR V+ K  +  +  A+  +I  G++P  VL L +    VDVNV
Sbjct: 240 PSAARPNRSMQHFFINGRFVKSKTAMVALEQAFKGSIMAGKFPSCVLHLSVPWEAVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI-----NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           HP+K  +RF N   I + +   ++ A+      K+ I     L            A K  
Sbjct: 300 HPSKIEVRFLNEKPIFDAVYHGVKSALLSGDQRKEMILPRPKLDPPASQPEQIRLAAKPA 359

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
           +   A      + +L   +   + N  L + +   S     + + + 
Sbjct: 360 IGSAAQETAEKEARLLTSQTEQAPNSSLGAYEKVVSSSAGRLAQPQQ 406



 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 131/289 (45%), Gaps = 6/289 (2%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
            N   I   + +       +  IS+    S +         AP     + A +    + +
Sbjct: 460 ENEPEIYLPVKRQTAIPAVRDFISSPFSFSDEASKPKAAGEAPGDTGFEAAAADRGRKAE 519

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNYIISQTTDG- 425
              QE         P      +    P EE+  +    +      +  + Y+I +  D  
Sbjct: 520 PKAQELSEEAAGEKPESSRQAAAAEPPREEAGLQPFGEKRQRLVGEAFRTYLIIEYGDDE 579

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L+++D+HAAHER+++EK+++   S K  +Q LL P  + L + E A ++E+ +     G 
Sbjct: 580 LLLIDKHAAHERILYEKLKK--ESGKSCAQYLLEPIPVTLDKNEYAAVLENQKLFWEAGF 637

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
           + E FG  ++ +R  P  L +++I   L +I   ++++ T  +  ++++ +   +AC  +
Sbjct: 638 EVEDFGGGSVLVRSAPLSLEQEDIASSLMEIAGHLLENKTDMS-TEKLDWLYHNIACRAA 696

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++G+     E+  L   + +NP    C HGRP  I LK  +IEK FGR
Sbjct: 697 VKAGQITSDQELIALAVALRENPEIRYCPHGRPVSITLKKREIEKQFGR 745


>gi|209522327|ref|ZP_03270949.1| DNA mismatch repair protein MutL [Burkholderia sp. H160]
 gi|209497233|gb|EDZ97466.1| DNA mismatch repair protein MutL [Burkholderia sp. H160]
          Length = 398

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 121/348 (34%), Positives = 194/348 (55%), Gaps = 9/348 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 56  IQPLPDQLISQIAAGEVVERPASVVKELLENALDAGARTLRILLDEGGVKRISITDDGCG 115

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+ +A+ RH TSKI    +   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 116 IPENELVLALTRHATSKIRSLAELEAVATLGFRGEALASIASVAQMSITSRTADVPHAVR 175

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F  PAR  FLKSEQ E     + IRR A+A P
Sbjct: 176 I---DAETGVLSPAAGTQGTTIEVRELYFNTPARRKFLKSEQTELGHCLEQIRRAALARP 232

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E +  + + G  G+P
Sbjct: 233 DVAISVLHNGKAVEHWNASEPPA----RVAKILGDTFATAHLPLDESAGPLAIYGCAGLP 288

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   R+P  VL L++ P  VDVNVH
Sbjct: 289 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGERFPSYVLFLDLPPEGVDVNVH 348

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           P+K  +RFR+   I  F+  ++Q+A+ +   ++    +    +     
Sbjct: 349 PSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPETTAGGHAAHLEPS 396


>gi|89897870|ref|YP_514980.1| DNA mismatch repair protein [Chlamydophila felis Fe/C-56]
 gi|123749556|sp|Q256F3|MUTL_CHLFF RecName: Full=DNA mismatch repair protein mutL
 gi|89331242|dbj|BAE80835.1| methyl-directed DNA mismatch repair protein [Chlamydophila felis
           Fe/C-56]
          Length = 580

 Score =  343 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 141/521 (27%), Positives = 253/521 (48%), Gaps = 16/521 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L    INQIAAGE+IE     +KEL+EN+LDA +  +E    GGG+    + DNG G
Sbjct: 7   IQLLDTTTINQIAAGEVIENSISVVKELVENALDAGADEIEVETLGGGQGLIVVKDNGCG 66

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M++E++ +A++RH TSKI +  D  ++ +FGFRGEALP+I ++S + ++S P     G++
Sbjct: 67  MSAEDVTLALKRHATSKIGEFSDIFSLSSFGFRGEALPAIASISKMEILSCPRIGE-GSR 125

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +I +        GT + +  LF+ +P R  F KS Q +   +  ++    ++  
Sbjct: 126 TIIHGGEIIASEAKPRQLGTTISIDSLFYNVPVRRGFQKSPQADRIAMRKLLENRILSIE 185

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V +++ + +   + +        F ER+  V+GE F+  A+ ++     + ++G+ G P
Sbjct: 186 GVGWSWVSERQQEFHILKHRG---FAERVGFVMGEGFMQEALRVDSGERPVCVRGFLGSP 242

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F+R   +   VFIN R V   FI   IR AY+  +P  R+PV VL L + P   D NVH
Sbjct: 243 GFHRPTRSGQRVFINDRPVDSVFISKQIREAYSMLLPPQRHPVFVLKLYLPPEWCDFNVH 302

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K+ +R      +  F+ +SI + + +      S +S+K I S         HL + ++
Sbjct: 303 PQKTEVRILKEEFVGEFLSESIGEVLAR---PQESSVSEKTIFSLPALRFFDEHLAERSS 359

Query: 361 --SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
              L +          ++    L    D   ++    ++   +   +   +  +I    +
Sbjct: 360 VEPLESISLPELSIPPKVPLPFLDKGQDIPTTDGQMQIDWGVSQEVRFLTSLGKI----V 415

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++ ++G+  +   AA  + +F     +       SQ+ L P  +++   E   +  H E
Sbjct: 416 LAEDSEGVHAIFTEAA-RKHLFYLALTENQQYNYKSQSFLVPLCLEVTPQEGIFLSSHVE 474

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           D  +LGI+  + GP   AI   P  + ++ +   +  +  E
Sbjct: 475 DFKQLGIELSQMGPCIFAIDSAPTFIGEEELKSWILFLAAE 515


>gi|153814909|ref|ZP_01967577.1| hypothetical protein RUMTOR_01124 [Ruminococcus torques ATCC 27756]
 gi|145847940|gb|EDK24858.1| hypothetical protein RUMTOR_01124 [Ruminococcus torques ATCC 27756]
          Length = 705

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 130/496 (26%), Positives = 231/496 (46%), Gaps = 16/496 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG SF ++TDN
Sbjct: 14  MPHIQVLDQITIDKIAAGEVIERPASIVKELVENAIDAKATSVTVEIKDGGISFIRVTDN 73

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ ++E+  A  RH TSKI   ++  +IH+ GFRGEAL SI AV+   ++++  +  +
Sbjct: 74  GCGIEADEVRCAFLRHSTSKIRTAEELVSIHSLGFRGEALSSIAAVTRTEVITKTEEGQS 133

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K +++       GT   +  LF+ IPAR  FLK+   E   + D++  +A+
Sbjct: 134 GIKYVIEGGKETALEETGAPNGTTFLIHQLFYNIPARRKFLKTPVTEAGHVQDLLIHLAL 193

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VSF F      + +    S NG   + I  V G +  +N +EL+ K + +++ G+ 
Sbjct: 194 SHPEVSFLFINNGQEKLR---TSGNGKLKDVIYNVYGREVTSNLLELDYKKDGLSISGFL 250

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    F+NGR V+   +  ++  AY +     ++P  VL  +++   +DV
Sbjct: 251 GKPVITRGNRNFENFFVNGRYVKSAMLSKSLEDAYKDFTMQHKFPFAVLHFQVEGDLIDV 310

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF+    + N + +++ + + +  +  ++ +     ++  +  +P    PK
Sbjct: 311 NVHPTKMELRFQRQQEVYNTMYEAVHRRLLEPELIQTATVPDPADAAQKKKESPFLLKPK 370

Query: 358 Y-ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               +  +  EK+  +        +      T  E      + E          A     
Sbjct: 371 SIENTKYDPIEKIREKMQEREPEQVREKAQETKPEQVREKVQDEEQGQARKQTSAIEADK 430

Query: 417 YIISQTTDGLVIVDQ---------HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
             + Q+   +   D           A HER    ++       +   Q     E      
Sbjct: 431 ESVLQSEPQIHDEDYFIRKMRERVKAYHERSSSAEVLDRGEIYRPQQQAERIREAAAYRA 490

Query: 468 GECALIMEHDEDLHRL 483
            E     +  +     
Sbjct: 491 KEADKTPKQMDLFEEN 506



 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 129/300 (43%), Gaps = 6/300 (2%)

Query: 301 PAKSYIRFRNPTIIR-----NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           P +   + ++    +     + I    +  +  +          + +    +    ++  
Sbjct: 404 PEQVREKVQDEEQGQARKQTSAIEADKESVLQSEPQIHDEDYFIRKMRERVKAYHERSSS 463

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA-CAQIH 414
            +        + +   +  R +        D T  + +   E       +       Q+ 
Sbjct: 464 AEVLDRGEIYRPQQQAERIREAAAYRAKEADKTPKQMDLFEENFLKREVKAEYTLIGQVF 523

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + Q  D L I+DQHAAHER+++E+  ++  S + TSQ L  P I+ L   E  L+ 
Sbjct: 524 DTYWLVQFQDSLYIIDQHAAHERVMYERTLKEMKSREYTSQYLSPPIILSLSMQEAQLLE 583

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           EH +   R+G + E FG    A+R +P  L      +LL ++ID++ D   T    D I+
Sbjct: 584 EHIDRFTRIGFEIEHFGGEEYAVRAVPDNLFGIAKKELLMEMIDDLADGINTSMTPDLID 643

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +A+M+C  +++   ++ + E++ L+ E+    N   C HGRPT I +   ++EK F R
Sbjct: 644 EKVASMSCKAAVKGNNRLSAKEVDALIGELLTLDNPYHCPHGRPTIIAMTKRELEKKFKR 703


>gi|313901992|ref|ZP_07835407.1| DNA mismatch repair protein MutL [Thermaerobacter subterraneus DSM
           13965]
 gi|313467716|gb|EFR63215.1| DNA mismatch repair protein MutL [Thermaerobacter subterraneus DSM
           13965]
          Length = 712

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 189/386 (48%), Gaps = 22/386 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L  ++INQIAAGE++ERP+  +KEL+ENSLDA + R+   +A GG     ++D+G 
Sbjct: 3   RIRRLDPQVINQIAAGEVVERPASVVKELVENSLDAGARRIRVDVAEGGLRSITVSDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +AV+RH TSKIS  DD +   T GFRGEAL ++ +V+ L L++RPP    G 
Sbjct: 63  GMDPDDALLAVERHATSKISRLDDLARAGTLGFRGEALAAMASVARLELVTRPPAAEGGF 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G    S  P A  PGT V VRDLFF  PAR   LK    E   I DV+   A+A 
Sbjct: 123 RVVVEGGAQRSAGPWASPPGTRVTVRDLFFNTPARRKHLKGPVAEFGRIADVVTAHALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F          +    S +G+    + +  G D     + +    +   ++GY G 
Sbjct: 183 PDVRFELWHNGREVLR---TSGSGDPAVAVLECFGPDVATGLIPVAAAGDACRIEGYVGA 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +    +  IN R VQ   +  ++  AY   +P  RYPV VL L +   +VDVNV
Sbjct: 240 PRIARASRAWQFFSINRRPVQVPSLRFSLENAYRHLLPARRYPVAVLALTVPGEEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +R      + + + ++++ A+ +                      P    P YA
Sbjct: 300 HPAKLEVRLVRERAVASLLYRAVESALAE-----------------RDPLRPAAPGPFYA 342

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSD 385
            S  N  E+    +      +     
Sbjct: 343 PSPGNPGERFTPPKGPWGNGEGPWRP 368



 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 10/191 (5%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIIDL 465
                Q+   Y+     DGL +VDQHAAHER+ FE+          + +Q L  P ++DL
Sbjct: 515 LEPLGQVAGTYLACAGPDGLYVVDQHAAHERIYFERFLAQGAGQAGVPAQLLAVPVVLDL 574

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS-- 523
              E AL++E    + R+G + E FGP ++A+R +PA L+ +  P LL D++  ++    
Sbjct: 575 PASEYALLLEQAAAVARMGFQIEPFGPRSVAVRAVPAALADRPAPSLLADLLARLLAEAV 634

Query: 524 -STTYTLQ----DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
                       DR   ILA  AC  +I++G ++   EM +LL ++ +      C HGRP
Sbjct: 635 RGGGEEAPVLDTDRAARILA--ACKAAIKAGDRLHPQEMAQLLADLARCRQPYACPHGRP 692

Query: 579 TFIKLKLSDIE 589
           T I++ + ++E
Sbjct: 693 TVIRVGVDELE 703


>gi|257887934|ref|ZP_05667587.1| DNA mismatch repair protein [Enterococcus faecium 1,141,733]
 gi|257823988|gb|EEV50920.1| DNA mismatch repair protein [Enterococcus faecium 1,141,733]
          Length = 702

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 204/370 (55%), Gaps = 7/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++ ++   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAIDAGSTQIDILVEEAGLRTIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++  A +RH TSKI   DD   I T GFRGEALPSI +VS + L +   +   G 
Sbjct: 63  GILADDVENAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSEMILETANQEEKQGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G ++   RP  +  GT + V +LFF  PARL ++K+   E   I D++ R+A+++
Sbjct: 123 YLLLKGGEVMEHRPAPLRQGTKITVSNLFFNTPARLKYVKTLHTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F      +   KM   + NG+  + I+ + G       +++  K  +  L GY  +
Sbjct: 183 PTIAFRLVHDGN---KMLATAGNGDLKQTIAGIYGLSTAKKMLKIEGKDLDFELFGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ +L +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRFIKNFSLNKAIVAGYGSKLMVGRFPIAILEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  +IQKA++++ +  S+  + +          PKT   +  
Sbjct: 300 HPTKQEVRLSKEKELTELISNAIQKALSQENLIPSAADNLRFKKKVPDQ--PKTEQIEID 357

Query: 360 TSLTNTQEKL 369
            S    +EK 
Sbjct: 358 LSYAFEEEKP 367



 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 1/197 (0%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E+    +       Q+H  Y+ +Q++DGL I+DQHAA ER+ +E  R+         Q L
Sbjct: 502 ETPVQRFPQLEYFGQMHGTYLFAQSSDGLYIIDQHAAQERIKYEYFREKIGEVSDDLQEL 561

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P ++D    +   + E    L   GI  E FG N+  +R  P          ++R++I
Sbjct: 562 LVPFVLDYPNSDALKLKEQKHLLEDAGIYLEEFGQNSFIVRAHPTWYPNGEEESIIREMI 621

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +  + +++   E     M+C  SI++   +   +   LL+++ +  N   C HGR
Sbjct: 622 DMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARVLLKDLAQCENPFNCPHGR 680

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  I    SD+E++F R
Sbjct: 681 PVLIHFTNSDMERMFKR 697


>gi|317500421|ref|ZP_07958645.1| DNA mismatch repair protein MutL [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089572|ref|ZP_08338471.1| hypothetical protein HMPREF1025_02054 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898176|gb|EFV20223.1| DNA mismatch repair protein MutL [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330404940|gb|EGG84478.1| hypothetical protein HMPREF1025_02054 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 692

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 130/496 (26%), Positives = 231/496 (46%), Gaps = 16/496 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L +  I++IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG SF ++TDN
Sbjct: 1   MPHIQVLDQITIDKIAAGEVIERPASIVKELVENAIDAKATSVTVEIKDGGISFIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ ++E+  A  RH TSKI   ++  +IH+ GFRGEAL SI AV+   ++++  +  +
Sbjct: 61  GCGIEADEVRCAFLRHSTSKIRTAEELVSIHSLGFRGEALSSIAAVTRTEVITKTEEGQS 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K +++       GT   +  LF+ IPAR  FLK+   E   + D++  +A+
Sbjct: 121 GIKYVIEGGKETALEETGAPNGTTFLIHQLFYNIPARRKFLKTPVTEAGHVQDLLIHLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VSF F      + +    S NG   + I  V G +  +N +EL+ K + +++ G+ 
Sbjct: 181 SHPEVSFLFINNGQEKLR---TSGNGKLKDVIYNVYGREVTSNLLELDYKKDGLSISGFL 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN N    F+NGR V+   +  ++  AY +     ++P  VL  +++   +DV
Sbjct: 238 GKPVITRGNRNFENFFVNGRYVKSAMLSKSLEDAYKDFTMQHKFPFAVLHFQVEGDLIDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RF+    + N + +++ + + +  +  ++ +     ++  +  +P    PK
Sbjct: 298 NVHPTKMELRFQRQQEVYNTMYEAVHRRLLEPELIQTATVPDPADAAQKKKESPFLLKPK 357

Query: 358 Y-ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               +  +  EK+  +        +      T  E      + E          A     
Sbjct: 358 SIENTKYDPIEKIREKMQEREPEQVREKAQETKPEQVREKVQDEEQGQARKQTSAIEADK 417

Query: 417 YIISQTTDGLVIVDQ---------HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
             + Q+   +   D           A HER    ++       +   Q     E      
Sbjct: 418 ESVLQSEPQIHDEDYFIRKMRERVKAYHERSSSAEVLDRGEIYRPQQQAERIREAAAYRA 477

Query: 468 GECALIMEHDEDLHRL 483
            E     +  +     
Sbjct: 478 KEADKTPKQMDLFEEN 493



 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 129/300 (43%), Gaps = 6/300 (2%)

Query: 301 PAKSYIRFRNPTIIR-----NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           P +   + ++    +     + I    +  +  +          + +    +    ++  
Sbjct: 391 PEQVREKVQDEEQGQARKQTSAIEADKESVLQSEPQIHDEDYFIRKMRERVKAYHERSSS 450

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA-CAQIH 414
            +        + +   +  R +        D T  + +   E       +       Q+ 
Sbjct: 451 AEVLDRGEIYRPQQQAERIREAAAYRAKEADKTPKQMDLFEENFLKREVKAEYTLIGQVF 510

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             Y + Q  D L I+DQHAAHER+++E+  ++  S + TSQ L  P I+ L   E  L+ 
Sbjct: 511 DTYWLVQFQDSLYIIDQHAAHERVMYERTLKEMKSREYTSQYLSPPIILSLSMQEAQLLE 570

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           EH +   R+G + E FG    A+R +P  L      +LL ++ID++ D   T    D I+
Sbjct: 571 EHIDRFTRIGFEIEHFGGEEYAVRAVPDNLFGIAKKELLMEMIDDLADGINTSMTPDLID 630

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +A+M+C  +++   ++ + E++ L+ E+    N   C HGRPT I +   ++EK F R
Sbjct: 631 EKVASMSCKAAVKGNNRLSAKEVDALIGELLTLDNPYHCPHGRPTIIAMTKRELEKKFKR 690


>gi|226312962|ref|YP_002772856.1| DNA mismatch repair protein MutL [Brevibacillus brevis NBRC 100599]
 gi|226095910|dbj|BAH44352.1| DNA mismatch repair protein MutL [Brevibacillus brevis NBRC 100599]
          Length = 690

 Score =  343 bits (879), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 7/380 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L E++ N IAAGE++ERP+  +KEL+ENS+DA ++ +E  +  GG    +I DNG 
Sbjct: 3   TIQVLDEQLANMIAAGEVVERPASVVKELVENSIDARATTIEIHVEEGGLEMIRIVDNGR 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A +RH TSKIS+  D   I T GFRGEALPSI AVS + L S    +  G 
Sbjct: 63  GMDREDCQLAFERHATSKISNARDLFRIRTLGFRGEALPSIAAVSRMELTSSTSSSEVGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G ++ ++   A   GT V VR LFF  PARL ++KS   E   I+D + R+A+ +
Sbjct: 123 HLLIEGGQLGTISDKAAVKGTEVCVRSLFFNTPARLKYMKSIATEVGHISDYVNRLALTH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF  +        +   S +G     ++ + G       + +  ++ +    G+   
Sbjct: 183 PSISFLLTHNGK---TLLQTSGDGKLLHVMAAIYGVQVAKLLLPIAGETLDYKWSGFLSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R N +     +NGR V+   I + I   Y   +P+GRYP+V L +E+DP  VDVNV
Sbjct: 240 TEVTRANRSYLSTLVNGRYVRSYSINNAIMRGYHTLLPIGRYPIVALQIEMDPSLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK   RF     + + I QS+++ + +       ++++       Q   P+  L    
Sbjct: 300 HPAKLEARFSKEDELCSAIEQSVKETLRQGLGIVRPMVTQPKAKVVTQVVQPQFDL--QI 357

Query: 360 TSLTNTQEKLFLQENRLSTN 379
           T     Q  L     RL   
Sbjct: 358 TKPDTPQSPLLAASPRLQEW 377



 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 109/273 (39%), Gaps = 5/273 (1%)

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL---QENRLSTNDLLP 383
            K       ++   ++       A + + PK    L   Q         E     +  + 
Sbjct: 416 AKVEAIPHEIVKATLLDQTDTREAFQPNEPKIPVQLDIAQAPSPAYPIHEISSEDHSAIA 475

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
             + T        E    +   +     Q+H  YI++Q  +G+ ++DQHAA ER+ +E  
Sbjct: 476 GTEQTPPLVEATNENETDSPVPVMYPVGQVHGTYIVAQNDEGMYLIDQHAAQERIFYEYF 535

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
                   I+SQ +L P  ++    E + + +    L   G++ E FG     +R  P  
Sbjct: 536 MDKLAEEDISSQIMLFPHTVEYTAAEASKLEKRLSLLQSFGLEIEAFGGRTFIVRAHPHW 595

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTY--TLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
             +    +++ ++I  ++++       +    E     M+C  SI++ R +   EM  LL
Sbjct: 596 FPEGAELEVIEELIQFVLETGENTQANVVLMREKAAIMMSCKASIKANRFLTHAEMESLL 655

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++ K  +   C HGRP  I     D+EK+F R
Sbjct: 656 NQLRKTSSPYTCPHGRPIVIHFTSYDLEKMFKR 688


>gi|257870588|ref|ZP_05650241.1| DNA mismatch repair protein [Enterococcus gallinarum EG2]
 gi|257804752|gb|EEV33574.1| DNA mismatch repair protein [Enterococcus gallinarum EG2]
          Length = 710

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 211/399 (52%), Gaps = 6/399 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++  I   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAVDAGSTQIDIFIEEAGLRKIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I T GFRGEALPSI +VS LT+ +     + G+
Sbjct: 63  GIAEEDVVTAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSILTIETAVKDASQGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  +    P  +  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 FLRLKGGTVEEHIPANLRQGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F      +   KM   + +G+  + I+ + G +     + +N +  +  L GY  +
Sbjct: 183 PEVAFRLVHEGN---KMLTTTGSGDLKQTIAGIYGVETAKKMLAINSEDLDFKLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL + +DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPIAVLEITMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I +SI  ++ ++ +  ++  + +       +   +T L    
Sbjct: 300 HPTKQEVRLSKEEELTKLISKSINDSLREENLIPNAADNLRFKKKVTTEPVEQTKL-DLG 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           TS T +    F +E                +   +PVEE
Sbjct: 359 TSPTTSSGLTFNRETGKFQVASSGYQQTVDNFVENPVEE 397



 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 5/251 (1%)

Query: 348 DNAPKTHLPKYATSLTNTQE--KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA--TH 403
           +   +   P  +     +Q+   L  ++ +   +  L +    Y++  D + E       
Sbjct: 449 EIVQEVDQPAASVLEDASQQDLSLIEEQAQERLHPELHAGQKNYTKYVDRLLEETPAKQR 508

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           +       Q+H  Y+ +Q+ +GL IVDQHAA ER+ +E  R+         Q LL P ++
Sbjct: 509 FPHLEYFGQMHGTYLFAQSDEGLYIVDQHAAQERIKYEYFREKIGEVSDDLQELLVPIVL 568

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           D    +   + E  + L  +GI  E FG N+  +R  P          ++R++ID ++++
Sbjct: 569 DYPNNDAIKLKEQTKKLQEVGIHLEEFGANSFIVRAHPTWYPAGEEESIIREMIDMLLET 628

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + +++   E     M+C  SI++   +   +   LL ++ K  N   C HGRP  I  
Sbjct: 629 G-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARILLADLAKCENPFNCPHGRPVLIHF 687

Query: 584 KLSDIEKLFGR 594
             SD+E++F R
Sbjct: 688 TNSDMERMFKR 698


>gi|7328294|emb|CAB82461.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           COL]
          Length = 468

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 196/381 (51%), Gaps = 7/381 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKY 358
           HP K  +R      +   I+  IQ+A   + +   + L      +        +    + 
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKNKVLHSFEQQKIEFEQ 358

Query: 359 ATSLTNTQEKLFLQENRLSTN 379
             +  N QEK F  E   S  
Sbjct: 359 RQNTENNQEKTFSSEESNSKP 379


>gi|332298473|ref|YP_004440395.1| DNA mismatch repair protein mutL [Treponema brennaborense DSM
           12168]
 gi|332181576|gb|AEE17264.1| DNA mismatch repair protein mutL [Treponema brennaborense DSM
           12168]
          Length = 681

 Score =  342 bits (878), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 141/681 (20%), Positives = 250/681 (36%), Gaps = 107/681 (15%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            +R L  ++  +IAAGE+I+RP+  ++EL++N++D+ +  + T I GGG    ++ DNG 
Sbjct: 7   PVRTLPPEVARKIAAGEVIDRPNAIVRELLDNAVDSGADSIVTEITGGGIDCIRVADNGS 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E++    + H TSKI+   D  N+ T GFRGEAL SI AVS L + S    +    
Sbjct: 67  GMTKEDLENCARPHATSKITSETDLMNLSTLGFRGEALSSIAAVSRLRITSACEGS--AW 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++  S  +   + P  +  GT+V+   LF   PAR  FLK    E  +        A+  
Sbjct: 125 RLEASVVRDHLITPADLPRGTVVQSEALFENFPARRMFLKRPAAEALMCRQTFVEKALPR 184

Query: 180 PKVSFTFSTIKSNRYKMN---------------------FQSTNGNFPERISQVIGEDFI 218
             +SF F      +  +                      F   +G+     +        
Sbjct: 185 TDISFHFVQDGKRKLDLPKGQTLAERFTAALDLPESPALFYELHGSAALSAAGDAPNAAD 244

Query: 219 NNAVELNE--------------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFI 264
           N+A+  +               +  +       G P  +R +    ++++NGR + +  +
Sbjct: 245 NSALPSDSVPNREDDAPSRTDGRRCDWKFTIIIGEPAVSRQDKKLLFIYVNGRRINEYSL 304

Query: 265 LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
           +  I        P G +P   L LE+DP  VD N+HPAK   RF++   +   +  +++ 
Sbjct: 305 MQAIEYGAQGYFPNGTHPAAALFLEMDPALVDFNIHPAKREARFKDIAPVHRAVSATVRD 364

Query: 325 AINKKGI-------------------STSSVLSKKMISSFH------------QDNAPK- 352
                 +                      +V +   + +F              D AP+ 
Sbjct: 365 FFRSHTVAHLAAQTASYCRIQPELEARPETVPADGSVKNFSAASAAAENAAPAADFAPQY 424

Query: 353 -THLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
             H    A S  +   + F +      E R S        D + +       E       
Sbjct: 425 GAHSGDAAPSGASDNRRRFFRDSFGELEVRQSEPAYALPGDGSAATYGTASHEPSCELPH 484

Query: 406 LG------------------IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            G                           ++ ++    L ++DQHAAHER+++       
Sbjct: 485 DGTVHGAAAGFGHDTAAAGVRYIGTALGVFLAAEKDGNLYLIDQHAAHERILYNAFIAQA 544

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
              +      +          E   +    E L R G +A   G        +P      
Sbjct: 545 GRKQALLVPYVVE---TADAREDEYLHSIGEQLDRAGFEAADCGGGRWEFSAVPIQWKGT 601

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
                 RD+  +++         + I ++ AT +C  +++ G  + +    RL  +    
Sbjct: 602 E-----RDLAADLLAERIAPA--ELIASLAATSSCRAAVKDGDVLDADSAQRLAEQALAL 654

Query: 568 PNSSQCNHGRPTFIKLKLSDI 588
            +   C HGRP + K+   ++
Sbjct: 655 SDP-HCPHGRPLWKKISREEL 674


>gi|89894335|ref|YP_517822.1| hypothetical protein DSY1589 [Desulfitobacterium hafniense Y51]
 gi|89333783|dbj|BAE83378.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 733

 Score =  342 bits (878), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 134/394 (34%), Positives = 195/394 (49%), Gaps = 12/394 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  NQIAAGE++ERP   +KELIEN+LDA+++++E +I G G    ++ DNG 
Sbjct: 4   KIHILDSQAANQIAAGEVVERPVSVVKELIENALDAQATQIEVIIEGSGVERIRVQDNGQ 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+++ ++P+ V RH TSKI   DD + + T GFRGEALPSI +VS L ++SRPP+  +G 
Sbjct: 64  GISAADLPLTVLRHATSKIRSIDDLNRLRTLGFRGEALPSIASVSRLEIISRPPEEISGR 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G +          PGT + V DLF+  PAR  FLKS+  E   I+DVI R+++A 
Sbjct: 124 VLRIQGGEQREFSETGCPPGTTITVDDLFYNTPARRKFLKSKNTEFGQISDVIGRLSLAR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT       +  +      GN  E I  V+G+      + L+    +  L+GY   
Sbjct: 184 PDVSFTLKH---PKVLVLQTPGKGNLLESIGAVLGQATARRLLPLSCSQGDWRLEGYISP 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R       + +N R ++   I   I   Y   IP   YP+ +L L I P + DVNV
Sbjct: 241 PDLVRSTKQGETLIVNERIIRSNSISRAISEGYHTLIPAKLYPITILKLHIPPHEYDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  IRF     +  FI + +++ + +       V  K   S       PK  LP   
Sbjct: 301 HPTKMEIRFHKEKELMEFIAEGVRRTLLQARPIAPFVKVKNTPS-------PKESLPSAD 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            +    Q  L        +     +    Y   +
Sbjct: 354 KADRPVQAALNFAPKSPHSPSQGKTIPIPYKHSS 387



 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 105/223 (47%)

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
            E  LS  +     +          E  E +         Q+   YI++   + LVI DQ
Sbjct: 510 AELELSVAEENHEINEITEITEITDEIKEQSPLLALRPIGQVFNTYIMATDGEQLVIFDQ 569

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAAHER+ +E++  +  +    SQ LL P  ++   GE   ++EH   L+ +G   E FG
Sbjct: 570 HAAHERINYERLLAEHQNNPGNSQMLLIPLTMEFTPGEEEALLEHFLLLNEMGFILEHFG 629

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
                +R IPA        QLLRD +D+++ +    T+   +E  +  +AC  SI++   
Sbjct: 630 TRTYLLRGIPAYSGPYQGEQLLRDFLDQVMLNHIPPTMDKLLEEWIYMLACKASIKAKEN 689

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   EM +L+ ++ K  N   C HGRPT I+L   ++E  F R
Sbjct: 690 LTLFEMEQLIVQLSKTLNPYTCPHGRPTMIQLTKEELEHRFYR 732


>gi|167571111|ref|ZP_02363985.1| DNA mismatch repair protein [Burkholderia oklahomensis C6786]
          Length = 344

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 127/326 (38%), Positives = 194/326 (59%), Gaps = 9/326 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  IKEL+EN+LDA +S +  V+  GG     ITD+G G
Sbjct: 26  IQPLPDQLISQIAAGEVVERPASVIKELVENALDAGASTLRIVLDEGGVKRISITDDGCG 85

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 86  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFVTSRTEDAAHAMR 145

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   + P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 146 I---DAQTGVLAPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 202

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++GE F    + L+E +  + + G  G+P
Sbjct: 203 DVAISVLHNGRAVEHWNASEPAA----RVAKILGEGFATAHLPLDESAGPLAVYGCAGLP 258

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 259 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 318

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI 326
           P+K  +RFR+   I  F+  ++Q+A+
Sbjct: 319 PSKIEVRFRDSRSIHQFVFHAVQRAL 344


>gi|256750829|ref|ZP_05491714.1| DNA mismatch repair protein MutL [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750412|gb|EEU63431.1| DNA mismatch repair protein MutL [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 384

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 207/370 (55%), Gaps = 6/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L EK IN+I+AGE++ERP+  +KELIENS+DA S  +   I  GG  + +++D+G 
Sbjct: 3   KIHLLDEKTINKISAGEVVERPASIVKELIENSIDAGSKNITVEILEGGIPYIKVSDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +  +A +RH TSKI    D  +I T GFRGEAL SI AVSH+TL ++      G 
Sbjct: 63  GMNEIDAILAFERHATSKIKSDNDLYSIGTLGFRGEALASIAAVSHVTLQTKEEGALFGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K+          G  +EVRD+FF  PAR  FLK    E+  ITDV+ ++ +++
Sbjct: 123 KVVVEGGKVVEKTTCGCAKGCSIEVRDVFFNTPARRKFLKRPSTESMYITDVVTKLCLSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF +   +  ++     S NGN  + I ++ G +  ++ +  + +S ++ L+   G 
Sbjct: 183 PEVSFKYVKDRKLQF---ITSGNGNIEDVILRLFGNEVYSSLMSASFESEDLKLKILAGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            + N  N N  + ++NGR V++K + + +  A+   IP+ RYP V L +EIDPRQ+DVN+
Sbjct: 240 NSLNYSNRNMQFFYVNGRYVKNKTLSAAVDEAFKTYIPVNRYPAVFLYMEIDPRQIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-SVLSKKMISSFHQDNAPKTHLPKY 358
           HP+K  I+F +   I   + ++I+ +++K  +     +  KK I               Y
Sbjct: 300 HPSKLEIKFSDERRIFEAVYKTIKDSLHKYNLIPEVKIEEKKNIFEIETPTISAEQTKLY 359

Query: 359 ATSLTNTQEK 368
            TS     EK
Sbjct: 360 FTSSDKEVEK 369


>gi|258545148|ref|ZP_05705382.1| DNA mismatch repair protein MutL [Cardiobacterium hominis ATCC
           15826]
 gi|258519619|gb|EEV88478.1| DNA mismatch repair protein MutL [Cardiobacterium hominis ATCC
           15826]
          Length = 310

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 118/314 (37%), Positives = 186/314 (59%), Gaps = 8/314 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L   +INQIAAGE+IERP+  +KE+IEN++DA +++++  I  GG    ++ DNG 
Sbjct: 3   RIQQLPNSLINQIAAGEVIERPASVVKEIIENAIDAGATQIDIDIEDGGGKLIRVRDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A   H TSKI   DD  +I T GFRGEALPSI +VS  TL SR    ++  
Sbjct: 63  GIHPDDLALAFATHATSKIRNLDDLEHITTLGFRGEALPSIASVSKTTLTSRAEGESSAW 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I+       ++ P A  PGT +E+RDLF+  PAR  FLKSE+ E   I  +++ +A+++
Sbjct: 123 RISPHLGD--AISPAAHPPGTTIEIRDLFYNTPARKKFLKSERTERQHIQQLVQNLALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             ++   +                    RI+ V+G+D +  A+ ++ ++ ++ L G+ G+
Sbjct: 181 DGITIRLNNHGKPLGVY----GGEGLAARIASVLGDDLLEQALPIDARAADMHLYGWVGL 236

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT       + Y +INGR ++DK I   IR AY + +  GR+PV VL L+I P  +DVN 
Sbjct: 237 PTSATNQPERQYFYINGRIIRDKIIAHAIRQAYQDMLYHGRHPVYVLYLDIAPEHIDVNA 296

Query: 300 HPAKSYIRFRNPTI 313
           HPAK  +RFR   +
Sbjct: 297 HPAKHEVRFRESRL 310


>gi|203287669|ref|YP_002222684.1| DNA mismatch repair protein [Borrelia recurrentis A1]
 gi|238690586|sp|B5RR29|MUTL_BORRA RecName: Full=DNA mismatch repair protein mutL
 gi|201084889|gb|ACH94463.1| DNA mismatch repair protein [Borrelia recurrentis A1]
          Length = 611

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 151/619 (24%), Positives = 271/619 (43%), Gaps = 45/619 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L + ++ +IAAGE I+RP   ++EL++N++D+ + ++E  I  GG     ITDNG 
Sbjct: 3   KIKFLDKTLVQKIAAGEAIDRPCSILRELLDNAIDSGADKIEVFIEEGGIRRILITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +    H TSKI++  D   I T GFRGEAL SI   S+L + S     N+  
Sbjct: 63  GISKEDLKICYLPHTTSKINEEKDLERIQTLGFRGEALSSIAICSNLMITSSITGENS-Y 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI I        +  +   GT+V+V +LF   PAR  FLK + +ET +   V    A+ +
Sbjct: 122 QIEIENGIEKYFKKQSAINGTMVDVTNLFHNFPARKRFLKKDSIETKMCLKVFEEKAVTH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-ELNEKSNEITLQGYTG 238
           P + F  S  K  +          +  +R+  V GE   NN   ++  + + + ++ +  
Sbjct: 182 PGIDFKLSVNKELKKVYF----KESLADRVQSVYGEIIENNKFGKIEAEYDHVKMKIFFT 237

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F+R +     +F+N R +++K +  +I   ++  +    +PV  L LEID   VD N
Sbjct: 238 PPNFSRKDRRNIKIFVNRRPIEEKSLSESIINGHSRILTYKNFPVCYLFLEIDTTHVDFN 297

Query: 299 VHPAKSYIRFRN----PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +HP K  +RF N    P  I N I +   +   +      +V+ K+ +++      P+  
Sbjct: 298 IHPQKKEVRFFNLPFLPKQISNNINEFFDREKQEILQDYHNVIIKRQLTNDAHLLHPEND 357

Query: 355 L--PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC-- 410
           L    + T      E L L + + +    +  D   +        +     +   I    
Sbjct: 358 LTNSNFKTYEITQDEDLILDKPKNNKVTNIIEDKVKFEGQISQKYKPSFKQHIQKIFIKT 417

Query: 411 -------------------AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                               Q+   ++I +  + +  +DQHA HE++I++ +    NS K
Sbjct: 418 SKMPNNFQKSTQTNEFKYMGQLFSEFLIVENANEIYFIDQHALHEKIIYQTL---INSEK 474

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
              + L+  E     E    ++    E+  ++ I  ++       +  IP I +K     
Sbjct: 475 TIQKLLVPIEFQVECEDTDKILTSELEEYKKIDIIVKKIQNQTYRLESIPNICNKYE--- 531

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
              +II +   +  +  +      + AT+AC  +I+    +       L+ E        
Sbjct: 532 ---NIIIQFFKTRKSKIIDSLETELYATLACRQAIKCNDTISLEFSQFLINEFFNLKL-K 587

Query: 572 QCNHGRPTFIKLKLSDIEK 590
            C HGR  + K+   ++EK
Sbjct: 588 HCPHGRKIYHKITKFELEK 606


>gi|313893442|ref|ZP_07827014.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           sp. oral taxon 158 str. F0412]
 gi|313442083|gb|EFR60503.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           sp. oral taxon 158 str. F0412]
          Length = 676

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 222/484 (45%), Gaps = 16/484 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  IKELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVIKELIENSIDASATNIEVEIGDGGVAYMRITDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ RH TSKI   +D  +I + GFRGEAL SI +VSH +L +R   ++ G 
Sbjct: 63  GMTEEDARLAILRHATSKIQQVEDLFDIASLGFRGEALASIASVSHFSLTTRKADSDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   +   P    PGT +E+RDLF+  PAR  FLKSE+ E++ I D++ ++A++ 
Sbjct: 123 RITVDGGTFTDCIPYGAAPGTTIEIRDLFYNTPARRKFLKSERTESSKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF                 NGN  + ++ + G    ++   +  +S+ I + G    
Sbjct: 183 PHISFKLIVDDR---VAIITPGNGNIGDTVAALYGYKTKDDIFTVAYESDSIYIDGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK I+  I  AY   +P   +P+VVL + +    VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTIMKAIDNAYHALLPKNGHPLVVLNITVPAGMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP KS ++F +  II   +   I  A+N       + L ++              L K +
Sbjct: 300 HPRKSEVKFSDDKIIFKAVYHGILNALN-------NPLHERYERESSAYMGISESLSKDS 352

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           ++  NT          +S  +       T    +D ++ +E     +        +    
Sbjct: 353 SNTHNTAINQGDDNTNISHGNSTYDSYRTPPVVHDDMQSAEHIATAVDYDKVFGGRRTKG 412

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +   G    +     E L  +              +        + +   +   E  + 
Sbjct: 413 YEVMRG----ETTQFVENLKAKGYTPPTPKATYEQSSFTDESFNAVPKEFTSYTKEDIDR 468

Query: 480 LHRL 483
              L
Sbjct: 469 FKSL 472



 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 3/245 (1%)

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
            P        +S T+       +E    T + +        +  +   E         + 
Sbjct: 434 PPTPKATYEQSSFTDESFNAVPKEFTSYTKEDIDRFKSLSHDIREQDVEERTIQNSGFLP 493

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+   YI+++  D L I+DQHAAHER+ ++K+    +S  I  Q++L P+  +  + E
Sbjct: 494 MGQVASCYILAKKGDDLYIIDQHAAHERVRYDKL--CKSSESIPMQSILVPQYSEATDDE 551

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             L+ E  E L  LG   E  GP  I +   P  L +    ++L+ +   + +       
Sbjct: 552 MNLVEEERETLLDLGFDVELGGPTKIKLVGAPVDLVESKAFEILQYVFSYLHEHQQPTKA 611

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           Q     +LA  +C G+I++G  +   +M  L+ ++        C HGRPT IK    ++ 
Sbjct: 612 Q-LRHEMLAYASCRGAIKAGHNLNMYQMTTLIEDLFSTEKPYVCPHGRPTIIKFTPDELG 670

Query: 590 KLFGR 594
           KLF R
Sbjct: 671 KLFLR 675


>gi|309805306|ref|ZP_07699357.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165382|gb|EFO67614.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 593

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 150/602 (24%), Positives = 266/602 (44%), Gaps = 52/602 (8%)

Query: 32  ENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHT 89
           EN+LDA S+R++      G     + DNG G+ ++EI +A  RH TSKI+   D  NI T
Sbjct: 1   ENALDAGSTRIKIDFIDAGLKQIMVQDNGSGIAADEIDLAFMRHATSKINTNHDLFNIAT 60

Query: 90  FGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFF 149
            GFRGEAL SI AV+ + +++    +  G               +A   GT + V+DLF+
Sbjct: 61  LGFRGEALASIAAVAKVDIVTNT-GDVNGIHAIFEDSNKVKQEAIASPQGTKIVVKDLFY 119

Query: 150 TIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
             PARL +LKSE+ E   I D++ R+A+ YP+VSF  +   + + ++   + + +  +  
Sbjct: 120 NTPARLKYLKSERTEIMKIVDIVNRLALGYPQVSFELT---NRQKQLLKTTGHDDLRQTA 176

Query: 210 SQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
           + + G       + +  +S +  + G        R   N   + +N R V++  ++  I 
Sbjct: 177 ANIYGIKVAEKMLAIYAQSPDFKIAGLISRADDTRSTRNFITLLLNTRYVKNYRLVQAIV 236

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y   +  GRYP  ++ +++DP  VDVNVHP K  +R    + +   I+++I + +   
Sbjct: 237 DGYGTRLLKGRYPFAIVKIDLDPLLVDVNVHPTKQEVRLSKESELARLIVRTIDQVLGAT 296

Query: 330 GISTSS---------VLSKKMISSFHQDNAPKTHLP-KYATSLTNTQEKLFLQEN----- 374
               +S             ++  + ++     + +P +++     T +   ++E+     
Sbjct: 297 EHEIASLDNATESKQTKLDQLEFNLNEAVVDTSRIPVEFSMPNDLTDDSSKVKEDDTTFV 356

Query: 375 ---------------------RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
                                +  T     S     SE     E+             Q+
Sbjct: 357 SLKHPRQDEHYLVTTTWDENVQAQTALSPFSASQLSSEVTTSSEQILVNRLPQLQCLGQM 416

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H+ Y+++   + L IVDQ AA  RL F+K+     +     QTLL   I+D    +   +
Sbjct: 417 HE-YLLATADNDLYIVDQVAADNRLAFDKLLLQMQAENNYEQTLLDNIILDFSMIDFLKV 475

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            +   D  +LG+  E FG  +  ++E P  L   +  Q ++ +ID I+        + RI
Sbjct: 476 QDKLADFKKLGLNLEEFGGRSFVLQEYPLWLENCDQIQ-IKAVIDLILAHINAPLDKIRI 534

Query: 534 E---NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           E    I+AT   +  IR  + + S+EM  +L  +  + N      G+    K+  +D+ K
Sbjct: 535 ELAKKIVATK--H--IRR-KSLNSLEMVEMLTSLSNSSNPYHDPFGKIIIAKISENDLRK 589

Query: 591 LF 592
           LF
Sbjct: 590 LF 591


>gi|264677242|ref|YP_003277148.1| DNA mismatch repair protein MutL [Comamonas testosteroni CNB-2]
 gi|262207754|gb|ACY31852.1| DNA mismatch repair protein MutL [Comamonas testosteroni CNB-2]
          Length = 745

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 206/385 (53%), Gaps = 7/385 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LD+ ++++   +  GG     + D+G 
Sbjct: 28  PIRDLPDELISQIAAGEVVERPASVVRELVDNALDSGAAQITVRLLAGGVRLIAVEDDGC 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKISD  D   + T GFRGEAL +I +VS  ++ SRP   ++  
Sbjct: 88  GIPRDELPVALRRHATSKISDLHDLETVATMGFRGEALAAIASVSETSIFSRPAGQDSAY 147

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A N GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 148 LLDARSGEL---RPAARNQGTTVEVKELFFSTPARRKFLKTDATELAHCIESVRRHALAR 204

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V F          +     +  +     R++ V+ + F++N+V ++  +  + + G  
Sbjct: 205 PDVGFAIWHEGKLVEQWRAAGSTPDEALSRRLADVLNDKFVDNSVAVDHWAGPVHVTGRA 264

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           GIP   R   +Q + ++NGR V+DK +    R+AY + +   + PV  L +EIDP +VDV
Sbjct: 265 GIPDAARSRPDQQFCYVNGRFVRDKVLTHAARSAYEDVLHGNKQPVYALYIEIDPARVDV 324

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RFR+   +   +  +I+ A+     +     + +  +         T  P 
Sbjct: 325 NVHPTKIEVRFRDSREVHQAVRHAIENALATPRAAAVVEAAAQEAARQPGLIDESTATPV 384

Query: 358 YATSLTNTQEKLFLQENRLSTNDLL 382
            A S           + R+S  +  
Sbjct: 385 AAKSANKPAAAPAWPQTRMSFGEPA 409



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN----STKITSQTLLT 459
           + LG A AQ+H  YI+++ + G+VIVD HAAHER+++E+++   N      +I SQ LL 
Sbjct: 549 WPLGRAVAQLHGVYILAENSQGMVIVDMHAAHERIVYEQLKNAVNTENGDQQIPSQPLLI 608

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P        E A    H E L  LG++   F P  +A+R +PA L++ +  +L R ++ E
Sbjct: 609 PATFAATPEEVATAEAHAETLLTLGMEVSPFSPKTLAVRAVPATLAQGDAVELARSVLAE 668

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           +     +  +Q     ILATMAC+G++R+ RK+   EMN LLR+ME    S QCNHGRPT
Sbjct: 669 LAQHDASTVVQRARNEILATMACHGAVRANRKLTLDEMNALLRQMEVTERSDQCNHGRPT 728

Query: 580 FIKLKLSDIEKLFGR 594
           + +L + +++ LF R
Sbjct: 729 WRQLSMKELDALFLR 743


>gi|27262202|gb|AAN87382.1| DNA mismatch repair protein MutL [Heliobacillus mobilis]
          Length = 695

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 121/335 (36%), Positives = 190/335 (56%), Gaps = 6/335 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L    +NQIAAGE++ERP+  +KEL+EN+LDA ++R++  +  GG+   +I DNG G
Sbjct: 4   IRLLDTHTVNQIAAGEVVERPASIVKELMENALDAGATRIDVHLTDGGRQLIRIVDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+ E+  + ++RH TSKI  ++D   I T GFRGEALPSI +VS +   +R   ++ G +
Sbjct: 64  MSPEDAALCIERHATSKIGSAEDLMAIETLGFRGEALPSIASVSRMEFTTRRHCDSQGTR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G +   V  V   PGT ++V DLF+  PAR  FL+S   E +   +VI R+A+A+P
Sbjct: 124 LRVEGGERQPVETVGAPPGTTIQVEDLFYNTPARRKFLRSSTAEGSACAEVIWRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT-LQGYTGI 239
            V+ + +  +   ++      N    E +S V G + I + + L+ KS+E   L G+ G 
Sbjct: 184 HVAVSLTQGRQVTFR---SPGNNKTLETLSAVYGREVIPHLLALSHKSSEGWELNGFIGE 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ NR N N    FIN R V+ + +   +   Y   +P+ R+P  VL L + P +VDVN 
Sbjct: 241 PSLNRANRNHQTWFINQRWVRSRSLSLAVEEVYQGLLPVHRFPFFVLNLLLPPHKVDVNA 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K  I+      I  FI   +++ +  + +S  
Sbjct: 301 HPTKQEIKIDQERDICEFIQSVLKETLRSRALSRP 335



 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 12/275 (4%)

Query: 323 QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
           + A N     T +   +     F + + P         S         + E+   + DL 
Sbjct: 429 EAATNTINDITKTDSKEISKGLFDKTSYPSPQYCVETESPEKYPGNTIVAESLPCSEDLP 488

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            S           V E         I   Q  ++YI+++    L ++DQHAAHER+++  
Sbjct: 489 KSPLYDVPLKAAMVAE--------WIPIGQFQRSYILAEGQGALYLIDQHAAHERVLYYA 540

Query: 443 MRQDFNS---TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           +++        + + Q LL P  + L   E   ++E   DL   GI  E FG N + IR 
Sbjct: 541 LKEKLEQAIDVEQSCQQLLIPVTVTLTPAEFDAVIERISDLRDAGIIMEHFGGNTLLIRA 600

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P  L       LLRDIID I         +D     L+++AC G++++G+ M   EM  
Sbjct: 601 VPLGLPPGEEEGLLRDIIDRI-QGGAKLKKEDLCREALSSLACRGAVKAGQTMSHPEMVA 659

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LL+++ +      C HGRP  +++  S++E  F R
Sbjct: 660 LLQQVARLEGMDTCPHGRPYLLRIDRSELEHRFHR 694


>gi|238019354|ref|ZP_04599780.1| hypothetical protein VEIDISOL_01218 [Veillonella dispar ATCC 17748]
 gi|237864053|gb|EEP65343.1| hypothetical protein VEIDISOL_01218 [Veillonella dispar ATCC 17748]
          Length = 673

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 120/328 (36%), Positives = 185/328 (56%), Gaps = 5/328 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  IKELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVIKELIENSIDASATNIEVEIGDGGVAYMRITDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ RH TSKI   +D  +I + GFRGEAL SI +VSH ++ +R    + G 
Sbjct: 63  GMTEEDARLAILRHATSKIQHVEDLFDIASLGFRGEALASIASVSHFSMTTRKADADLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   +   P    PGT +E+RDLF+  PAR  FLK+E+ E++ I D++ ++A++ 
Sbjct: 123 RITVDGGTFTDCIPYGAAPGTTIEIRDLFYNTPARRKFLKTERTESSKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF                 NGN  + ++ + G    ++   +  +S+ I + G    
Sbjct: 183 PHISFKLIIDDR---VAIITPGNGNIGDTVAALYGYKTKDDIFTVAYESDSIYIDGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK I+  I  AY   +P   +P+VVL + +    VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTIMKAIDNAYHALLPKNGHPLVVLNITVPAEMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           HP KS ++F +  II   +   I  A+N
Sbjct: 300 HPRKSEVKFSDDKIIFKAVYHGILNALN 327



 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 3/245 (1%)

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
            P        +S T+        E    T + +        +  +   E         + 
Sbjct: 431 PPAPKATYEQSSFTDESFDAVPTEYTSYTKEDVERFKALAHDIREDNTEERTIQNSGFLP 490

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+   YI+++  D L I+DQHAAHER+ ++K+    +S  I  Q++L P+  +  + E
Sbjct: 491 MGQVASCYILAKKGDDLYIIDQHAAHERVRYDKL--CKSSEAIPMQSILVPQYSEATDDE 548

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             L+ E  E L  LG   E  GP  I +   P  L +    ++L+ +   + D       
Sbjct: 549 MNLVEEEREILLDLGFDIELGGPTKIKLVGAPVDLVESKAFEILQYVFSYLHDHQQPTKA 608

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           Q     +LA  +C G+I++G  +   +M  L+ ++        C HGRPT IK    ++ 
Sbjct: 609 Q-LRHEMLAYASCRGAIKAGHNLNMYQMTTLIEDLFSTEKPYVCPHGRPTIIKFTPDELG 667

Query: 590 KLFGR 594
           KLF R
Sbjct: 668 KLFLR 672


>gi|29840706|ref|NP_829812.1| DNA mismatch repair protein [Chlamydophila caviae GPIC]
 gi|33301356|sp|Q821I9|MUTL_CHLCV RecName: Full=DNA mismatch repair protein mutL
 gi|29835056|gb|AAP05690.1| DNA mismatch repair protein mutL [Chlamydophila caviae GPIC]
          Length = 580

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 141/544 (25%), Positives = 251/544 (46%), Gaps = 11/544 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L    INQIAAGE+IE     +KEL+EN+LDA +  +E    GGG+    + DNG 
Sbjct: 6   PIQLLDTITINQIAAGEVIENSISVVKELVENALDAGADEIEVETLGGGQGLIVVKDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+SE++ +A++RH TSKI +  D  ++ +FGFRGEALP+I ++S + ++S P     G+
Sbjct: 66  GMSSEDVALALKRHATSKIGEFSDVFSLSSFGFRGEALPAIASISKMEILSCPRAGE-GS 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G +I +        GT + +  LF+ +P R  F KS Q +   +  ++    ++ 
Sbjct: 125 RTIIHGGEIVTSEAKPRQVGTTISIDSLFYNVPVRRGFQKSPQTDRMAMRKLLENRILSV 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V +++ + +   + +        F ER++ V+GE F+  A+ +++  N + + G+ G 
Sbjct: 185 ENVGWSWVSERQQEFHIFKHQG---FAERVAFVMGEGFMQEALRVDKGGNLVRVVGFLGS 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P F+R       VFIN R V   FI   I  AY+  +P  RYPV VL L + P   D NV
Sbjct: 242 PGFHRPTRLGQRVFINDRPVDSTFISKKISEAYSMLLPPQRYPVFVLKLYLPPEWCDFNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +R      +  F+ ++I + +         V   +  S+          LP+ A
Sbjct: 302 HPQKTEVRILREEFVGEFLSETIGEVLA----RPQEVSVFETASTLPALRFFDEQLPESA 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
                    L + +   S++  LP  D          +   +      +         ++
Sbjct: 358 LEGLQGSNVLPVVKLTPSSSGSLPFLDREPDPLPVDRQTQISWGASQEVRFLTSLGKIVL 417

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++ ++G+  +   +A + L +  + ++       SQ+ L P  +++   E   +  H E+
Sbjct: 418 AEDSEGVHAIFTESARKHLFYLSLVENHQHN-YKSQSFLVPLCLEVTPQERIFLSSHIEE 476

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
              LGI+  + GP   +I   P  + ++ +   +  +  E              E +  T
Sbjct: 477 FKLLGIEISQMGPCVFSIESAPTFIGEEELKLWILSLAAESAKVDKRAMTLLIKEALTQT 536

Query: 540 MACY 543
           + C 
Sbjct: 537 IFCK 540


>gi|294791814|ref|ZP_06756962.1| DNA mismatch repair protein MutL [Veillonella sp. 6_1_27]
 gi|294457044|gb|EFG25406.1| DNA mismatch repair protein MutL [Veillonella sp. 6_1_27]
          Length = 685

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 120/328 (36%), Positives = 186/328 (56%), Gaps = 5/328 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  IKELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVIKELIENSIDASATNIEVEIGEGGVAYMRITDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ RH TSKI   +D  +I + GFRGEAL SI +VSH +L +R   ++ G 
Sbjct: 63  GMTEEDARLAILRHATSKIQQVEDLFDIASLGFRGEALASIASVSHFSLTTRKADSDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   +   P    PGT +E++DLF+  PAR  FLK+E+ E + I D++ ++A++ 
Sbjct: 123 RITVDGGTFTDCIPYGAAPGTTIEIKDLFYNTPARRKFLKTERTEASKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF                 NG+  + ++ + G    ++   +  +S+ I + G    
Sbjct: 183 PHISFKLIIDDR---VAIITPGNGDISDTVAALYGYKTKDDIFTVAYESDSIYIDGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK I+  I  AY   +P   +P+VVL + +  R VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTIMKAIDNAYHALLPKNGHPLVVLNITVPARMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           HP KS ++F +  II   +   I  A+N
Sbjct: 300 HPRKSEVKFSDDKIIFKAVYHGILNALN 327



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 11/265 (4%)

Query: 337 LSKKMISSFHQDNAPKTHLP-------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           + +   S F ++   K + P       + ++ +  + E +       ++ D+      ++
Sbjct: 424 VMRGETSQFVENLKTKGYTPPAPKATYEQSSFVDESFEAVPTAYTSYTSEDVEKFKSLSH 483

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
              N+ +EE    +        Q+   YI+++  D L I+DQHAAHER+ ++K+    +S
Sbjct: 484 DIRNEEIEERTIQNSGFLPM-GQVASCYILAKKGDDLYIIDQHAAHERVRYDKL--CKSS 540

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             I  Q++L P+  +    E  L+ E  E L  LG   E  GP  I +   P  L +   
Sbjct: 541 ESIPMQSILVPQYSEATNDEMNLVEEERETLLDLGFDVELGGPTKIKLVGAPVDLVESKA 600

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            ++L+ I   + D       Q     +LA  +C G+I++G  +   +M  L+ ++     
Sbjct: 601 FEILQYIFSYLHDHQQPTKAQ-LRHEMLAYASCRGAIKAGHNLNMYQMTTLIEDLFSTEK 659

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRPT IK    ++ KLF R
Sbjct: 660 PYVCPHGRPTIIKFTPDELGKLFLR 684


>gi|330443960|ref|YP_004376946.1| DNA mismatch repair protein mutL [Chlamydophila pecorum E58]
 gi|328807070|gb|AEB41243.1| DNA mismatch repair protein mutL [Chlamydophila pecorum E58]
          Length = 575

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 134/540 (24%), Positives = 249/540 (46%), Gaps = 17/540 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L    +NQIAAGE+IE  +  +KELIEN+LDA +  +E    GGG+    + DNG 
Sbjct: 6   PIQLLDTITVNQIAAGEVIENAASVVKELIENALDAGADEIELETLGGGQGLIIVKDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E++ +A+QRH TSKI D  D  ++H+FGFRGEALPSI ++S + ++S   +   G 
Sbjct: 66  GMTQEDVSLALQRHATSKIRDFSDIFSLHSFGFRGEALPSIASISRMEILSSLQEGE-GV 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G +     P A   GT + V  LF+ +P R  F KS  V+  L+  ++    +A 
Sbjct: 125 RCVIQGGESVLCEPAARRRGTTITVDSLFYNVPVRKGFQKSPHVDRMLMRKMLENRILAT 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V +++ + +S    +       +    ++ V+GE+F+  A+E++    ++ ++G+ G 
Sbjct: 185 EAVGWSWISERSQELLVLKHQGFADR---VALVMGENFMQEALEIDTHDGDVRIKGFFGS 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             F+R +     +F+N R V+  FI   +   ++  +P+ RYPV VL L + P + D NV
Sbjct: 242 LNFHRPSRQGQRIFVNDRPVESGFISRKVGEMFSVLLPVQRYPVFVLKLYLPPARCDFNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +R     ++   +   + + + +             IS               +
Sbjct: 302 HPQKTEVRIFQEELVGEKLKICLSEVLMRSQQIPREPQPPSCISEVPFPTPTIFEPRDLS 361

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L   +   F  E  L               ++  ++  EA + +   +  ++    ++
Sbjct: 362 EDLLEKEVGGFSLEEALPPKQEFAQGQK----NSLQIDWLEACNVRFLTSLGKV----VL 413

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  +G+  +      + L +  +++        SQT L P  + +   E  +++ + E+
Sbjct: 414 AEDFEGVYAIFPDVLRKHLFYLSLQEPQQHK---SQTFLIPLTLQVTPQESQVLLLYMEE 470

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L + GI+  + GP    I   P  + ++ +   +  +  E  +          I   L+ 
Sbjct: 471 LCQFGIELSQVGPQVFIIESAPEFIEEEELKAWMLLLASEQRERVGREAFLMFIRETLSR 530


>gi|294793675|ref|ZP_06758812.1| DNA mismatch repair protein MutL [Veillonella sp. 3_1_44]
 gi|294455245|gb|EFG23617.1| DNA mismatch repair protein MutL [Veillonella sp. 3_1_44]
          Length = 681

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 126/412 (30%), Positives = 206/412 (50%), Gaps = 9/412 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  IKELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVIKELIENSIDASATNIEVEIGEGGVAYMRITDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ RH TSKI   +D  +I + GFRGEAL SI +VSH +L +R   ++ G 
Sbjct: 63  GMTEEDARLAILRHATSKIQQVEDLFDIASLGFRGEALASIASVSHFSLTTRKADSDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   +   P    PGT +E++DLF+  PAR  FLK+E+ E + I D++ ++A++ 
Sbjct: 123 RITVDGGTFTDCIPYGAAPGTTIEIKDLFYNTPARRKFLKTERTEASKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF                 NG+  + ++ + G    ++   +  +S+ I + G    
Sbjct: 183 PHISFKLIIDDR---VAIITPGNGDISDTVATLYGYKTKDDIFTVAYESDSIYIDGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK I+  I  AY   +P   +P+VVL + +  R VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTIMKAIDNAYHALLPKNGHPLVVLNITVPARMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN----KKGISTSSVLSKKMISSFHQDNAPKTHL 355
           HP KS ++F +  II   +   I  A+N    ++    SS      +++           
Sbjct: 300 HPRKSEVKFSDDKIIFKAVYHGILNALNNPLHERYERESSSYMTGTVANISDKYGNDIAS 359

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
              +     +     L  N    +  +P+      +  + +  +       G
Sbjct: 360 NSNSDIKKFSSNSTSLAGNTTYDSYQVPTVVHDSMQSAEHIATAIDYDKVFG 411



 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 119/265 (44%), Gaps = 11/265 (4%)

Query: 337 LSKKMISSFHQDNAPKTHLP-------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           + +   S F ++   K + P       + ++ +  + E +       ++ D+      ++
Sbjct: 420 VMRGETSQFVENLKTKGYTPPAPKATYEQSSFVDKSFEAVPTAYTSYTSEDVEKFKSLSH 479

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
              N+ +E+    +        Q+   YI+++  D L I+DQHAAHER+ ++K+    +S
Sbjct: 480 DIRNEEIEDRTIQNSGFLPM-GQVASCYILAKKGDDLYIIDQHAAHERVRYDKL--CKSS 536

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             I  Q++L P+  +  + E  L+ E  E L  LG   E  GP  I +   P  L +   
Sbjct: 537 ESIPMQSILVPQYSEATDDEMNLVEEERETLLDLGFDVELGGPTKIKLVGAPVDLVESKA 596

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            ++L+ I   + D       Q     +LA  +C G+I++G  +   +M  L+ ++     
Sbjct: 597 FEILQYIFSYLHDHQQPTKAQ-LRHEMLAYASCRGAIKAGHNLNMYQMTTLIEDLFSTEK 655

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRPT IK    ++ KLF R
Sbjct: 656 PYVCPHGRPTIIKFTPDELGKLFLR 680


>gi|163814089|ref|ZP_02205481.1| hypothetical protein COPEUT_00242 [Coprococcus eutactus ATCC 27759]
 gi|158450538|gb|EDP27533.1| hypothetical protein COPEUT_00242 [Coprococcus eutactus ATCC 27759]
          Length = 702

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 116/392 (29%), Positives = 210/392 (53%), Gaps = 9/392 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +  IN+IAAGE+IE+PS  IKEL+ENS+D+ ++ +   + G G SF ++TDNG G
Sbjct: 2   IKVLDQNTINKIAAGEVIEKPSSVIKELVENSIDSGATAITVEVKGSGLSFLRVTDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A  RH TSK+   +D  +I + GFRGEAL SI +V+ + ++++   + TG +
Sbjct: 62  IKKDEVKLAFLRHATSKLVTVEDLLSISSLGFRGEALASIASVAQVEMITKTADDVTGLR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  S   +    GT + VR+LF+  PAR  F+K++  E + I D++ R+ +++P
Sbjct: 122 YQIHGGREISSEEIGAPGGTTIIVRNLFYNTPARKKFMKTDLTEISYIYDLMCRICMSHP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           K+SF F +  +++    F S NG   + I  + G D  +N +E+N +++ + + GY   P
Sbjct: 182 KISFKFISNGTDKL---FTSGNGKLRDIIYHIYGRDITSNLLEINAENDYMKISGYIARP 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +RGN +    ++N R ++   +   I  A+   + + ++P   +  ++ P  +DVNVH
Sbjct: 239 CISRGNRSFEGYYVNHRYIKSAVLTKAIEDAFRTFVMIHKFPFTEINFQVRPDLLDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN----APKTHLP 356
           P K  ++F N   I +F   +I++ +  K +       K      ++      AP+    
Sbjct: 299 PTKMELKFANSQDIYSFTYNAIRETLLFKELIPDVAPGKDSKPETYKQRNVGDAPEAFEN 358

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
           K   +L     +       + T++ L   +  
Sbjct: 359 KRREALVGPVAQAKAAPTHMVTDNSLVKSENA 390



 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/284 (22%), Positives = 118/284 (41%), Gaps = 3/284 (1%)

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
            ++  +      A  +  I           S+  + +      P+ +    + + +    
Sbjct: 418 ALQQPLKPDNIPAPVRPIIDVIDETKDTNTSAEKKSDNNTYEQPQKSGYSYSGRHQEIPG 477

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA--CAQIHQNYIISQTTDGLVIVD 430
                +     + D       +  +E   T           Q+ + Y + +      I+D
Sbjct: 478 SKVAESKASYMAVDDRKYVQQNMFQEKFLTKEARAKHRLIGQLFKTYWLIEYDGKFFIMD 537

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE++ +E++ +++ + KI SQ L+ P ++ L   E   + E+ E    LG + E F
Sbjct: 538 QHAAHEKVKYEELMENYKNKKIYSQYLMPPAVVTLSATEIEFLHENMETFEALGYQIENF 597

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G     +  +P  L   +  +L  D I +   S+   T+   I   L+TMAC  +I+   
Sbjct: 598 GGREFKLNAVPDNLFGLDGRELFIDFIADASSSAKKVTIDVFIHK-LSTMACKAAIKGNT 656

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   E + L+ ++ K  N   C HGRPT I +  ++IEK F R
Sbjct: 657 EISFKEADALIDQLLKLENPYTCPHGRPTVISMTEAEIEKKFKR 700


>gi|282850162|ref|ZP_06259541.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           parvula ATCC 17745]
 gi|282579655|gb|EFB85059.1| DNA mismatch repair protein, C-terminal domain protein [Veillonella
           parvula ATCC 17745]
          Length = 679

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 120/328 (36%), Positives = 185/328 (56%), Gaps = 5/328 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  IKELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVIKELIENSIDASATNIEVEIGEGGVAYMRITDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ RH TSKI   +D  +I + GFRGEAL SI +VSH +L +R   ++ G 
Sbjct: 63  GMTEEDARLAILRHATSKIQQVEDLFDIASLGFRGEALASIASVSHFSLTTRKADSDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   +   P    PGT +E++DLF+  PAR  FLK+E+ E + I D++ ++A++ 
Sbjct: 123 RITVDGGTFTDCIPYGAAPGTTIEIKDLFYNTPARRKFLKTERTEASKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF                 NG+  + ++ + G     +   +  +S+ I + G    
Sbjct: 183 PHISFKLIIDDR---VAIITPGNGDISDTVAALYGYKTKEDIFTVAYESDSIYIDGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK I+  I  AY   +P   +P+VVL + +  R VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTIMKAIDNAYHALLPKNGHPLVVLNITVPARMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           HP KS ++F +  II   +   I  A+N
Sbjct: 300 HPRKSEVKFSDDKIIFKAVYHGILNALN 327



 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/265 (24%), Positives = 118/265 (44%), Gaps = 11/265 (4%)

Query: 337 LSKKMISSFHQDNAPKTHLP-------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           + +   S F ++   K + P       + ++ +  + E +       ++ D+      ++
Sbjct: 418 VMRGETSQFVENLKTKGYTPPAPKATYEQSSFVDESFEAVPTAYTSYTSEDVEKFKSLSH 477

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
              N+ +EE    +        Q+   YI+++  D L I+DQHAAHER+ ++K+    +S
Sbjct: 478 DIRNEEIEERTIQNSGFLPM-GQVASCYILAKKGDDLYIIDQHAAHERVRYDKL--CKSS 534

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             I  Q++L P+  +    E  L+ E  E L  LG   E  GP  I +   P  L +   
Sbjct: 535 ESIPMQSILVPQYSEATNDEMNLVEEERETLLDLGFDVELGGPTKIKLVGAPVDLVESKA 594

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            ++L+ I   + D       Q     +LA  +C G+I++G  +   +M  L+ ++     
Sbjct: 595 FEILQYIFSYLHDHQQPTKAQ-LRHEMLAYASCRGAIKAGHNLNMYQMTTLIEDLFSTEK 653

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRPT IK    ++ KLF R
Sbjct: 654 PYVCPHGRPTIIKFTPDELGKLFLR 678


>gi|262341304|ref|YP_003284159.1| DNA mismatch repair protein MutL [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272641|gb|ACY40549.1| DNA mismatch repair protein MutL [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 575

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 143/600 (23%), Positives = 269/600 (44%), Gaps = 33/600 (5%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I+ L   +I+QIAAGE+I RPS  ++EL+EN++DA +  ++  I   GK+  Q+ D
Sbjct: 1   MKDLIQFLPINVISQIAAGEVILRPSSVLRELLENAIDANAKMIDIFIKNSGKTLIQLID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G GM+  +  M++QR+ TSKI  +DD   + T GFRGEAL SI  +S L + ++  +N 
Sbjct: 61  DGDGMSVNDAKMSIQRYATSKIKQADDIFKMRTKGFRGEALASIALISQLEIQTKNQENV 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  + +   KI    P+ M  GT + V+++F+ +PAR  FLKS Q+E   I     ++ 
Sbjct: 121 LGIHLFVEEGKIKEEIPINMLKGTRISVKNIFYKLPARRQFLKSSQIEFQHIVHEFYKIV 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +A+  + + F         + F     +  ERI ++   +       +  K N I ++G+
Sbjct: 181 LAHRNILYRFYHNDK----IVFYFQEASLRERIKEIFKNE-NKILTPIFIKKNRILVKGF 235

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +P  +        + +N R V   F+   I  AY   +   +     + + IDP  V+
Sbjct: 236 VSVPDSSI-KKGNQLILVNQRCVTHLFLHKKIIHAYDGFLKDLKTVSYFIFIHIDPNFVN 294

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            N+HP+K  ++     II   I Q I+  +  +    +  L K  +           +  
Sbjct: 295 WNIHPSKKEVQLEEEDIIGCMIQQEIKNILFDQYEVKNKELKKYDVLLSCDSKNSFLNDF 354

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH-- 414
            +        E+L  ++  +   +L   +D ++   N  +    + +         +   
Sbjct: 355 SF--------EELSYKKKVIQLENLFRLNDSSFFNKNVDLTNQLSRYIANKKRIITLQIN 406

Query: 415 -QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            +  I +   + ++ VDQH AH  ++FE   +      + SQ  L P  + LL+ E   +
Sbjct: 407 RKYIIFTLNNEYIIFVDQHRAHRNILFEFFLR---EKNLISQQFLFPIEVRLLKKEFISL 463

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
               +DL   G     F   +  +  +P  + +     +L ++   I+  +     +   
Sbjct: 464 KNIKDDLINFGFHL-YFCNESAYLYSVPENIHQ----NILVEVFQNILKYNFIKGKKKNK 518

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
           + ++ +++   SI+ G ++   +M  L+R++    N +  + G P F  L+ +     F 
Sbjct: 519 KILIQSISKSASIKYGTELYPDKMECLIRDLFSCHNPNYTDSGDPIFFVLRKN----FFK 574


>gi|225572116|ref|ZP_03780980.1| hypothetical protein RUMHYD_00410 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040450|gb|EEG50696.1| hypothetical protein RUMHYD_00410 [Blautia hydrogenotrophica DSM
           10507]
          Length = 677

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 207/382 (54%), Gaps = 7/382 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +  I++IAAGE++ERPS  +KEL EN++DA ++ V   I  GGK+  +ITDNG 
Sbjct: 3   KIAVLDKNTIDKIAAGEVVERPSSVVKELTENAIDAGATAVTVEIKDGGKTLIRITDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++PMA  RH TSKI   +D   I + GFRGEAL SI AV+ + L+++ P + TG 
Sbjct: 63  GIEKEQVPMAFVRHATSKIEKVEDLEQIVSLGFRGEALSSIAAVAQVELITKTPASITGV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G +  S+  +    GT   V +LF+ +PAR  FLK+   E + ++ +I ++A+++
Sbjct: 123 RYVIEGGEEKSLEEIGAPEGTTFLVHNLFYNVPARSKFLKTAATEGSYVSSLIEQLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF +      +      S N +  + I Q+ G D     +E++ ++  ++L+GY G 
Sbjct: 183 PEISFKYIVNGQVKLH---TSGNFSRRDVIYQIYGRDITKEILEVHYENEFLSLEGYIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ +RGN N    +INGR V++K I   I  AY   +    +P   L +E+    +DVNV
Sbjct: 240 PSVSRGNRNFENYYINGRYVKNKIISKAIEDAYKGFLMQHNFPFASLQIEMTGNDLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RF     +   I ++I + + KK +       +   +   +       +P+  
Sbjct: 300 HPAKMEVRFSRGDEVYKAIYEAILQTLKKKEMIPEVRADQGREAKEERPKMKSGQIPEPF 359

Query: 360 T--SLTNTQEKLFLQENRLSTN 379
                   +E+   +E+R   N
Sbjct: 360 EYKERQRLREQTIYEEDRQQKN 381



 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 116/290 (40%), Gaps = 13/290 (4%)

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTN 364
               +        I  + +   N + +    VL  +  + F    + KT   +   +   
Sbjct: 399 KPALKTEEKKVAEIWNTGRPKKNWEILREKPVLHSEEDALFSGTLSEKTPAKEEPKTQNR 458

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                 +Q   L+    L  +                          Q+   Y + +  D
Sbjct: 459 EDTSFEVQTEALAKQLDLFQERML-----------SQKARSRHRLIGQVFDTYWLVEYED 507

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
              I+DQHAAHE++++EK+ + +   ++ SQ +  P ++ L   +  L++EH +   + G
Sbjct: 508 KFYIIDQHAAHEKVLYEKIVRQYQEREMISQYISPPVVVSLTMQQETLLLEHMQMFLKFG 567

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
            + E FG    +I  +PA L      QL  ++ID +          +     +ATMAC  
Sbjct: 568 FEIEPFGGKEYSIHAVPADLYGYTEGQLFVEMIDALEQDGQLSM--EVFAGRMATMACKA 625

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++   ++   E N L+ ++    N   C HGRPT I +  +++EK F R
Sbjct: 626 AVKGNTQLSFAEANELIDQLLTLDNPYHCPHGRPTIIAMTRTELEKKFKR 675


>gi|317121912|ref|YP_004101915.1| DNA mismatch repair protein MutL [Thermaerobacter marianensis DSM
           12885]
 gi|315591892|gb|ADU51188.1| DNA mismatch repair protein MutL [Thermaerobacter marianensis DSM
           12885]
          Length = 726

 Score =  340 bits (871), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 118/332 (35%), Positives = 178/332 (53%), Gaps = 5/332 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L  ++INQIAAGE++ERP+  +KEL+ENSLDA + R+   +  GG     + D+G 
Sbjct: 3   RIRRLDPQVINQIAAGEVVERPASVVKELVENSLDAGARRIRVDVEEGGLRSITVADDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +AV+RH TSKI+  DD ++  T GFRGEAL +I +V+ L L++RPP  + G 
Sbjct: 63  GMDPDDAMLAVERHATSKITRLDDLAHAGTLGFRGEALAAIASVARLELITRPPGADGGF 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G       P A  PGT V VRDLFF  PAR   LK    E   I DV+   A+A 
Sbjct: 123 RVVVEGGTARGAGPWASPPGTRVTVRDLFFNTPARRKHLKGPAAEFARIADVVTAHALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F          +    S +G+    + +  G D     + +        ++GY G 
Sbjct: 183 PEVRFELVHNGREVLR---TSGSGDRAVVVLECFGPDVAGALIPVVAGDGLRRVEGYVGA 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R +    +  IN R VQ   +  ++  AY   +P  RYPV V+ + +   +VDVNV
Sbjct: 240 PRVARASRAWQFFSINRRPVQVASLRFSLENAYRHLLPARRYPVAVVDVALPGEEVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           HPAK  +R      +   +  ++Q A+ K+ +
Sbjct: 300 HPAKLEVRLVRERAVAALLYGAVQDALAKRDL 331



 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 31/218 (14%)

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQTLLTPEIID 464
                 Q+   Y+     DGL +VDQHAAHER+ FE+  ++  S   + +Q L  P +ID
Sbjct: 507 QLQPLGQVAGTYLACAGPDGLYLVDQHAAHERVYFERFLREGASPAGVPAQMLAVPVVID 566

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI-------------PQ 511
           L   E AL+ EH   + RLG + E FGP ++A+R +PA L+ +                 
Sbjct: 567 LAPAERALLEEHRAAVARLGFRIEPFGPRSVAVRAVPAALADRPAPDLLVDLLSRLLVEA 626

Query: 512 LLRDIIDEIIDSSTTYTLQ---------------DRIENILATMACYGSIRSGRKMQSIE 556
           + R   + +  +                      +R   ILA  AC  +I++G ++   E
Sbjct: 627 VTRGDGERVGGTGAQDPDPADPGGEGTALAALDTERAARILA--ACKAAIKAGDRLHPRE 684

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           M RLL ++        C HGRPT I++ + ++E+ FGR
Sbjct: 685 MARLLADLAACRQPYTCPHGRPTVIRVGVEELERRFGR 722


>gi|257866606|ref|ZP_05646259.1| DNA mismatch repair protein [Enterococcus casseliflavus EC30]
 gi|257872878|ref|ZP_05652531.1| DNA mismatch repair protein [Enterococcus casseliflavus EC10]
 gi|257800564|gb|EEV29592.1| DNA mismatch repair protein [Enterococcus casseliflavus EC30]
 gi|257807042|gb|EEV35864.1| DNA mismatch repair protein [Enterococcus casseliflavus EC10]
          Length = 702

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 207/399 (51%), Gaps = 5/399 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++  I   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAVDAGSTQIDIFIEEAGLRKIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I T GFRGEALPSI +VS L++ +       G+
Sbjct: 63  GIAEEDVLTAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSILSIETAVKDAQQGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  +    P  +  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 FVRLKGGAVEEHLPANLRQGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F      +   KM   + +G   + I+ + G +     + ++ +  +  + G+  +
Sbjct: 183 PEVAFRLVHEGN---KMLSTTGSGQLKQTIAGIYGVETAKKMIAIDTEDLDFKVTGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPLAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+ +  +  ++  + +           +    +  
Sbjct: 300 HPTKQEVRLSKEEELTKLISKAINEALREINLIPNAADNLRFKKKVADQPKAQQLGLELE 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           ++  +T    + +E                +    PVEE
Sbjct: 360 SAGNSTSGLSYNRETGKFEVQGNTYQQTVDNSVEKPVEE 398



 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 5/251 (1%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPV--EESEATH 403
               K  LP+    L +   +L  Q  +++ + +  +  DD  Y +  + +  EE     
Sbjct: 441 QTETKASLPEAPVFLPDETPELTAQDLQSQATLHPEMHGDDRNYLKTVERLLEEEPAKER 500

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           +       Q+H  Y+ +Q+  GL IVDQHAA ER+ +E  R+         Q LL P ++
Sbjct: 501 FPQLDYFGQMHGTYLFAQSEAGLYIVDQHAAQERIKYEYYREKIGEVTNDLQELLVPIVL 560

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           D    +   + E  + L  +GI  E FG N+  +R  P          ++R++ID ++ +
Sbjct: 561 DYPNSDALQLQEQSDKLAEVGIHLESFGTNSFIVRAHPTWYPSGEEEAIIREMIDMLLTT 620

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + +++   E     M+C  SI++   +   +   LL+++ K  N   C HGRP  I  
Sbjct: 621 G-SVSVKKFREATAIMMSCKRSIKANHYLNEAQARILLQDLAKCENPFNCPHGRPVLIHF 679

Query: 584 KLSDIEKLFGR 594
             SD+E++F R
Sbjct: 680 TNSDMERMFKR 690


>gi|291515608|emb|CBK64818.1| DNA mismatch repair protein MutL [Alistipes shahii WAL 8301]
          Length = 664

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 194/374 (51%), Gaps = 8/374 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E + NQIAAGE++ RP+  +KE++EN++DA ++ V+     GGK   QI D+G 
Sbjct: 4   KIRLLPEVVANQIAAGEVVNRPASVVKEMMENAIDAGATSVKVNFRDGGKDLIQIVDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  MA  RH TSKI   +D   +HTFGFRGEAL SI AVS + L +R   +  G 
Sbjct: 64  GMSPIDARMAFDRHATSKIGAVEDIYALHTFGFRGEALASIAAVSQVELRTRQAGDEVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q  I+G + ++  PV    G+   VR+LF+ +PAR  FL       + I    +R+A+  
Sbjct: 124 QTEINGGQFAAQNPVMCPVGSQFFVRNLFYNVPARRRFLDKSTTSASQIKAEFQRIALCN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F      +  Y +      G+   RI  V+G     N +E+   ++   ++GY G 
Sbjct: 184 PQIAFELYANDAPVYTLQA----GSLAGRIVDVVGRHIKQNLLEVEADTSIACIEGYIGR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +    + Y+F+NGR  +  ++ S I  AY + IP    P   L L +DP ++DVNV
Sbjct: 240 PAAAKKRNTEQYLFVNGRFFKSTYLTSAILKAYEKLIPESCQPSYFLYLTLDPGRIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ ++F +   +   +  ++++ + K G        +   S        K  +    
Sbjct: 300 HPQKTEVKFADEEAVWQIVNAAVRETLAKTGAVPLMDFDRD--SPVEIPVLQKGAVYSEP 357

Query: 360 TSLTNTQEKLFLQE 373
            +++N+    F +E
Sbjct: 358 LAMSNSDYNPFREE 371



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 80/220 (36%), Gaps = 5/220 (2%)

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD-DPTYSEDNDPVE 397
           +    SF Q  A    LP          E     E   S      S  D   S      +
Sbjct: 411 RSAAPSFPQAAAGGFALPGADAGEFEEFESGGGFEITPSGGGFDDSALDFIPSSAAPEQQ 470

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
             +            +   Y+ +      V+VD   A ER+++E   +   +    SQ L
Sbjct: 471 RFDMPQRPEFTDALPLPGGYVAALLGGRFVVVDVRRARERILYEDYLRMLGNGSSVSQQL 530

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L PE + L   E AL+ E+  +   LG   +  G   + +R  PA +    + +LL D++
Sbjct: 531 LFPERLVLSGDEYALLEENAVEFAALGFDIDFCGEGTVEVRGTPADMPADAVDRLLFDLL 590

Query: 518 DEIIDSSTTYTLQD-RIENILATMACYGSIRSGRKMQSIE 556
                  T  +L D R E I   MA  G+  +GR +   E
Sbjct: 591 QAFA---TPVSLSDVRREKIAGVMARSGAKGAGRTLSREE 627


>gi|255507173|ref|ZP_05382812.1| DNA mismatch repair protein [Chlamydia trachomatis D(s)2923]
 gi|289525620|emb|CBJ15098.1| DNA mismatch repair protein [Chlamydia trachomatis Sweden2]
 gi|296435181|gb|ADH17359.1| DNA mismatch repair protein [Chlamydia trachomatis E/150]
 gi|296438901|gb|ADH21054.1| DNA mismatch repair protein [Chlamydia trachomatis E/11023]
          Length = 576

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 139/520 (26%), Positives = 246/520 (47%), Gaps = 14/520 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L    +NQI+AGE+IE  +  +KELIENSLDA +  +     GGG+    + DNG 
Sbjct: 7   RIRLLDSVTVNQISAGEVIENAASVVKELIENSLDAGADEIHIETLGGGRGQIVVRDNGV 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  EE+P+A+QRH TSKI+   D  ++ ++GFRGEALPSI ++S + + +       G+
Sbjct: 67  GMDPEEVPVALQRHATSKIAHFADIFSLASYGFRGEALPSIASISKMEIHTARAG-GLGS 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I   +     P     GT + V  LF+ +P R +F KS Q++   I  ++    ++ 
Sbjct: 126 KTLIEKGEPVCCEPAPRQQGTTIAVHSLFYNVPMRQSFQKSPQMDRLAIRRLLENSVLSS 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +T+ + +     +   +    F ER++ V+GE F+  A  ++++  ++ + G+ G 
Sbjct: 186 EGIGWTWISERRQELHV---AKKQGFIERVALVLGESFVQEAFFIDKQQGDLRVLGFLGS 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R       +FIN R V+  FI   +  AYA  IP  RYP+ VL L + P   D NV
Sbjct: 243 PNQHRSTRQGQRLFINNRAVESSFISKKVAEAYAWMIPAQRYPIFVLKLFLPPMWCDFNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +R      I N +I++I +A+ ++  S    + K        +N   +      
Sbjct: 303 HPQKTEVRLLQEGQISNLLIEAISEALLRRSPSLEETVLKVPTEKIPIENEGISVSSIRP 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             ++         +      ++        +  +  V E       LG           +
Sbjct: 363 AIVSAPLSCPTFSQQPYLKTEMATIVSRDSASSSLSVVEKVRFLTSLGKVL--------L 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            + ++G+ +V   AA + L +  +  +   +++  QT L P  + + + E   +    E 
Sbjct: 415 VEDSEGVHVVFVQAARKHLFYVSLLSECLESRLACQTFLLPPSVQMTKLEADFLQMRLEA 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           L  LGI+  R  P++ AI   P  + ++ + + +  +  E
Sbjct: 475 LTALGIELSRISPDSFAIESAPPFIQEEELKEWIVALAQE 514


>gi|309799336|ref|ZP_07693579.1| DNA mismatch repair protein MutL [Streptococcus infantis SK1302]
 gi|308117003|gb|EFO54436.1| DNA mismatch repair protein MutL [Streptococcus infantis SK1302]
          Length = 464

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 126/399 (31%), Positives = 215/399 (53%), Gaps = 6/399 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG+G
Sbjct: 4   IIELPEVLANQIAAGEVIERPASVVKELVENAIDAGSSQIIVEIEEAGLKKIQITDNGYG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  + P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEIIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       VE+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLASAKKMVEIENADLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   Y   + +GR+P+ V+ ++IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGYGSKLMVGRFPLAVIHIQIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +R      +   + ++I K++ ++ +   ++ +    +  +++   +T LP    
Sbjct: 301 PTKQEVRISKERELMALVSEAIAKSLKEQTLIPDALENLAKSAVRNREKVEQTTLPLREN 360

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +L   + +L  +  +    D   +      + N   +E+
Sbjct: 361 TLYYEKTEL-TRPPQAEVADHQVNLTEERQDLNLFAKEA 398


>gi|219668759|ref|YP_002459194.1| DNA mismatch repair protein MutL [Desulfitobacterium hafniense
           DCB-2]
 gi|219539019|gb|ACL20758.1| DNA mismatch repair protein MutL [Desulfitobacterium hafniense
           DCB-2]
          Length = 730

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 192/379 (50%), Gaps = 12/379 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  NQIAAGE++ERP   +KELIEN+LDA+++++E +I G G    ++ DNG 
Sbjct: 4   KIHILDIQAANQIAAGEVVERPVSVVKELIENALDAQATQIEVIIEGSGVERIRVQDNGQ 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+++E++P+ V RH TSKI   DD + + T GFRGEALPSI +VS L ++SRPP+  +G 
Sbjct: 64  GISAEDLPLTVLRHATSKIRTIDDLNRLRTLGFRGEALPSIASVSRLEIISRPPEEISGR 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + I G +          PGT + V DLF+  PAR  FLKS+  E   I+DVI R+++A 
Sbjct: 124 VLRIQGGEQLEFSETGCPPGTTITVDDLFYNTPARRKFLKSKNTEFGQISDVIGRLSLAR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSFT       +  +      GN  E I  V+G+      + L+    +  L+GY   
Sbjct: 184 PDVSFTLKH---PKVLVLQTPGKGNLLESIGAVLGQATARRLLPLSCSLGDWRLEGYISP 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R       + +N R ++   I   I   Y   IP   YP+ +L L I P + DVNV
Sbjct: 241 PDLVRSTKQGETLIVNERIIRSNSISRAISEGYHTLIPAKLYPITILKLHIPPHEYDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  IRF     +  FI + +++ + +       V  K   S       PK  LP   
Sbjct: 301 HPTKMEIRFHKEKELMEFIAEGVRRTLLQARPIAPFVKVKNTPS-------PKESLPGAD 353

Query: 360 TSLTNTQEKLFLQENRLST 378
                 Q  L        +
Sbjct: 354 KVDRPVQGALNFAPKSPHS 372



 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 97/188 (51%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q+   YI++   + LVI DQHAAHER+ +E++  +  +    SQ LL P  ++  
Sbjct: 542 LRPIGQVFNTYIMATDGEQLVIFDQHAAHERINYERLLAEHQNNPGNSQMLLIPLTMEFT 601

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
            GE   ++EH   L+ +G   E FG     +R IPA        QLLRD +D+++ +   
Sbjct: 602 PGEEEALLEHFLLLNEMGFILEHFGTRTYLLRGIPAYSGPYQGEQLLRDFLDQVMLNHIP 661

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            T+   +E  +  +AC  SI++   +   EM +L+ ++ K  N   C HGRPT I+L   
Sbjct: 662 PTMDKLLEEWIYMLACKASIKAKENLTLFEMEQLIVQLSKTLNPYTCPHGRPTMIQLTKE 721

Query: 587 DIEKLFGR 594
           ++E  F R
Sbjct: 722 ELEHRFYR 729


>gi|325567291|ref|ZP_08143958.1| DNA mismatch repair protein HexB [Enterococcus casseliflavus ATCC
           12755]
 gi|325158724|gb|EGC70870.1| DNA mismatch repair protein HexB [Enterococcus casseliflavus ATCC
           12755]
          Length = 702

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 207/399 (51%), Gaps = 5/399 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++  I   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAVDAGSTQIDIFIEEAGLRKIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I T GFRGEALPSI +VS L++ +       G+
Sbjct: 63  GIAEEDVLTAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSILSIETAVKGAQQGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  +    P  +  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 FVRLKGGAVEEHLPANLRQGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F      +   KM   + +G   + I+ + G +     + ++ +  +  + G+  +
Sbjct: 183 PEVAFRLVHEGN---KMLSTTGSGQLKQTIAGIYGVETAKKMIAIDTEDLDFKVTGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPLAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+ +  +  ++  + +           +    +  
Sbjct: 300 HPTKQEVRLSKEEELTKLISKAINEALREINLIPNAADNLRFKKKVADQPKAQQLGLELE 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           ++  +T    + +E                +    PVEE
Sbjct: 360 SAGNSTSGLSYNRETGKFEVQGSTYQQTVDNSVEKPVEE 398



 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 120/280 (42%), Gaps = 2/280 (0%)

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
           N + ++ +   + +    +  + K  +    +  AP    P +    T       LQ   
Sbjct: 412 NLLEETEKTFRSLEETLPNKPVRKPFVEDQMETKAPLPEAPAFLPDETPELTAQDLQSQA 471

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATH-YQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
               ++   D          +EE  A   +       Q+H  Y+ +Q+  GL IVDQHAA
Sbjct: 472 TLHPEMHGDDRNYLKTVERLLEEEPAKERFPQLDYFGQMHGTYLFAQSEAGLYIVDQHAA 531

Query: 435 HERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA 494
            ER+ +E  R+         Q LL P ++D    +   + E  + L  +GI  E FG N+
Sbjct: 532 QERIKYEYYREKIGEVTNDLQELLVPIVLDYPNSDALQLQEQSDKLAEVGIHLESFGTNS 591

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
             +R  PA         ++R++ID ++ +  + +++   E     M+C  SI++   +  
Sbjct: 592 FIVRAHPAWYPSGEEEAIIREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNE 650

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +   LL+++ K  N   C HGRP  I    SD+E++F R
Sbjct: 651 AQARILLQDLAKCENPFNCPHGRPVLIHFTNSDMERMFKR 690


>gi|257876211|ref|ZP_05655864.1| DNA mismatch repair protein [Enterococcus casseliflavus EC20]
 gi|257810377|gb|EEV39197.1| DNA mismatch repair protein [Enterococcus casseliflavus EC20]
          Length = 702

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 207/399 (51%), Gaps = 5/399 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA S++++  I   G    Q+ DNG 
Sbjct: 3   KIQELSERLANQIAAGEVVERPASVVKELVENAVDAGSTQIDIFIEEAGLRKIQVIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I T GFRGEALPSI +VS L++ +       G+
Sbjct: 63  GIAEEDVLTAFKRHATSKIHNRDDLFRIRTLGFRGEALPSIASVSILSIETAVKGAQQGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G  +    P  +  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 FVRLKGGAVEEHLPANLRQGTKITVENLFYNTPARLKYVKTLQTELANIGDIVNRIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F      +   KM   + +G   + I+ + G +     + ++ +  +  + G+  +
Sbjct: 183 PEVAFRLVHEGN---KMLSTTGSGQLKQTIAGIYGVETAKKMIAIDTEDLDFKVTGFVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +++DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIRNFALNKAIVAGYGSKLMVGRFPLAVLEIKMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I ++I +A+ +  +  ++  + +           +    +  
Sbjct: 300 HPTKQEVRLSKEEELTKLISKAINEALREINLIPNAADNLRFKKKVADQPKAQQLGLELE 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           ++  +T    + +E                +    PVEE
Sbjct: 360 SAGNSTSGLSYNRETGKFEVQGNTYQQTVDNSVEKPVEE 398



 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 116/251 (46%), Gaps = 5/251 (1%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQ--ENRLSTNDLLPSDDPTYSEDNDPV--EESEATH 403
               K  LP+    L +   +L  Q  +++ + +  +  DD  Y +  + +  EE     
Sbjct: 441 QTETKASLPEAPVFLPDETPELTAQDLQSQATLHPEMHGDDRNYLKTVERLLEEEPAKER 500

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           +       Q+H  Y+ +Q+  GL IVDQHAA ER+ +E  R+         Q LL P ++
Sbjct: 501 FPQLDYFGQMHGTYLFAQSEAGLYIVDQHAAQERIKYEYYREKIGEVTNDLQELLVPIVL 560

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           D    +   + E  + L  +GI  E FG N+  +R  P          ++R++ID ++ +
Sbjct: 561 DYPNSDALQLQEQSDKLAEVGIHLESFGTNSFIVRAHPTWYPSGEEEAIIREMIDMLLTT 620

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + +++   E     M+C  SI++   +   +   LL+++ K  N   C HGRP  I  
Sbjct: 621 G-SISVKKFREATAIMMSCKRSIKANHYLNEAQARILLQDLAKCENPFNCPHGRPVLIHF 679

Query: 584 KLSDIEKLFGR 594
             SD+E++F R
Sbjct: 680 TNSDMERMFKR 690


>gi|70726617|ref|YP_253531.1| DNA mismatch repair protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447341|dbj|BAE04925.1| DNA mismatch repair protein MutL [Staphylococcus haemolyticus
           JCSC1435]
          Length = 675

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 121/404 (29%), Positives = 207/404 (51%), Gaps = 11/404 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA+S+ +   +   G S  ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAKSTEINIEVEQSGISSIRVVDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +   RH TSK+   DD  +I T GFRGEAL SI +V+ +TL +    +  G 
Sbjct: 63  GIEQDDLDLVFHRHATSKLDADDDLFHIRTLGFRGEALASISSVAKVTLKTCT-DSENGH 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     +I S +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYAENGEILSRKPAKAKKGTDITVSSLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +  +  +      K N    +G   E +S++ G     + V +   +++  L+G+   
Sbjct: 182 PYIRISLISDGKTLLKTN---GSGKTNEVMSEIYGIKVAKDLVHIQGDTSDYHLEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GRYP+  L +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFVLNKAIIEGYHTLLTIGRYPICYLNIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK-----KMISSFHQDNAPKTH 354
           HP K  +R      +   I++ I+ A   + +   + L +     K+++ F Q       
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVEKIRYAFKDRILIPQNDLDRTPKKNKVLNQFEQQKLDFER 358

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
             + +           + E++L   +L  +D       N+  E 
Sbjct: 359 RQQNSNQDKTNSHYYGMSESKLQNPNLEKNDLDNNELINESTEN 402



 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQN 416
            S  +++E +  Q N    +        +  ++ND    V  + +          Q+H  
Sbjct: 437 ESTNDSEEVVTEQSNNDEASSKTYQTLYSKQDNNDIKGKVSNTPSRRVPYMEVVGQVHGT 496

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YII+Q  +G+ ++DQHAA ER+ +E  R+         Q LL P      + E  +I ++
Sbjct: 497 YIIAQNENGMFMIDQHAAQERIKYEYFREKIGEVTNEVQDLLIPLTFHFSKDEQMIIDQY 556

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            ++L ++G+  E FG +   +   P    K    ++++D++ E++ +     ++   E+ 
Sbjct: 557 QDELDKVGVHLEHFGGHDYIVNSYPVWFPKAEAEEIIQDMV-ELVLNDKKVNVKKMREDA 615

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              M+C  SI++   +++ EM  L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 616 AIMMSCKKSIKANHYLKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKR 673


>gi|237668724|ref|ZP_04528708.1| DNA mismatch repair protein MutL [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237657072|gb|EEP54628.1| DNA mismatch repair protein MutL [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 610

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 5/340 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+E   N+IAAGE++ERPS  +KEL+ENS+DA S  +   I  GG S  +I D+G 
Sbjct: 3   RINILNEDTANKIAAGEVVERPSSVVKELVENSIDAASKNITIEIEDGGTSLIRIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I  A   H TSKI  S+D  NI T GFRGEALPSI +V+ + L S+   +  G 
Sbjct: 63  GVFKDDIKKAFMPHATSKITKSEDIYNISTLGFRGEALPSIASVAKVNLKSKTANSEYGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K   V     N GTI+EVRDLFF +PAR  FLKS   E +LI D+I R+A+A 
Sbjct: 123 EINIEGGKFGDVYECGTNKGTIIEVRDLFFNVPARKKFLKSVSKEGSLINDIITRIALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K+     N +  + +  + G+   +N +   + S+ +T+ GY G 
Sbjct: 183 PDISFKLFNNHK---KVIHTFGNNDIKDTLRTIYGKSITDNIIYFEDSSDLVTIHGYVGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               RG+ N   +F+N R +++K +   +  A+     + ++P  VL +EI P  VDVN+
Sbjct: 240 EDIARGSRNNQSIFVNKRYIKNKSLAVAVEQAFKSFSTVNKFPFFVLFVEIYPEYVDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
           HP K+ I+F +  ++   I  ++  ++      + ++   
Sbjct: 300 HPTKAEIKFNDERMVFKKIFSAVHNSLKNDIFESFAIEED 339



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 65/139 (46%)

Query: 379 NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           +  L  D  T + +     + +   +       Q ++ YI+ +    L ++DQHAAHE++
Sbjct: 470 DQDLQKDSDTINYNEKVKYKEKIAKFPPISIIGQYNKTYILGEYDGTLYMIDQHAAHEKI 529

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            FEK  +D  S  I  Q L+ P IIDL   + +   E+ E     G   E FG  +IA++
Sbjct: 530 YFEKYLKDIESGDIIVQPLMIPSIIDLTIDDYSYFEENKEIFKDAGFILEEFGGTSIALK 589

Query: 499 EIPAILSKKNIPQLLRDII 517
           E+P  L K N    L   +
Sbjct: 590 EVPYFLGKLNPKNYLLKYL 608


>gi|296448879|ref|ZP_06890706.1| DNA mismatch repair protein MutL [Methylosinus trichosporium OB3b]
 gi|296253614|gb|EFH00814.1| DNA mismatch repair protein MutL [Methylosinus trichosporium OB3b]
          Length = 384

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 139/345 (40%), Positives = 216/345 (62%), Gaps = 2/345 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+IR+L   ++++IAAGE+IERP+ A+KEL+EN+LDA ++RV+  I  GG+   ++ D+G
Sbjct: 34  MRIRRLDPILVDRIAAGEVIERPASAVKELVENALDAGATRVDVAIEAGGRRLIRVVDDG 93

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           FGM  E++ +AV+RH TSKI D D + I T GFRGEALPSI AV+ L + +R      GA
Sbjct: 94  FGMNLEDVALAVERHATSKIPDGDLTAIATLGFRGEALPSIAAVADLAIDTRARGAEMGA 153

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +      ++R      GT VE RDLF   PARL FLKSE+ ET  + DV++R++IA+
Sbjct: 154 HIRVEAGARRALRAGDWPKGTRVEARDLFAATPARLKFLKSERAETAAVADVVKRLSIAH 213

Query: 180 PKVSFTFSTIKSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           P V F FS      +       T      R++Q +GE F  NA+ ++ +   + L G  G
Sbjct: 214 PAVRFGFSADIGQSFDHPACGETKEGLARRLAQALGEAFAANAIVVDAERAGVRLTGLAG 273

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           +PTF+R NA   +V++NGR V+DK     +R AY + +   R+P + L ++ DPR VDVN
Sbjct: 274 LPTFHRANAQMQFVYVNGRPVRDKLFAGAVRAAYLDFLSHDRHPALALFIDCDPRSVDVN 333

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
           VHPAK+ +RF +P ++R  ++ ++++A+      ++   +++ ++
Sbjct: 334 VHPAKAEVRFADPGLVRGLVVGALKEALASALHRSADTPAREALA 378


>gi|269797933|ref|YP_003311833.1| DNA mismatch repair protein MutL [Veillonella parvula DSM 2008]
 gi|269094562|gb|ACZ24553.1| DNA mismatch repair protein MutL [Veillonella parvula DSM 2008]
          Length = 681

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 130/426 (30%), Positives = 213/426 (50%), Gaps = 7/426 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E  IN+IAAGE++ERP+  IKELIENS+DA ++ +E  I  GG ++ +ITDNG 
Sbjct: 3   TIHVLDETTINKIAAGEVVERPASVIKELIENSIDASATNIEVEIGEGGVAYMRITDNGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A+ RH TSKI   +D  +I + GFRGEAL SI +VSH +L++R   ++ G 
Sbjct: 63  GMTEEDARLAILRHATSKIQQVEDLFDIASLGFRGEALASIASVSHFSLITRKADSDLGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   +   P    PGT +E++DLF+  PAR  FLK+E+ E + I D++ ++A++ 
Sbjct: 123 RITVDGGIFTDCIPYGAAPGTTIEIKDLFYNTPARRKFLKTERTEASKIQDIVGKLALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF                 NG+  + ++ + G    ++   +  +S+ I + G    
Sbjct: 183 PHISFKLIIDDR---VAIITPGNGDISDTVAALYGYKTKDDIFTVAYESDSIYIDGVVSK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  +       + +N R + DK I+  I  AY   +P   +P+VVL + +  R VD+NV
Sbjct: 240 PTLLKSTRIWQTIIVNNRVISDKTIMKAIDNAYHALLPKNGHPLVVLNITVPARMVDINV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP KS ++F +  II   +   I  A+N          S   ++    + + K      +
Sbjct: 300 HPRKSEVKFSDDKIIFKAVYHGILNALNNPLHERYERESSSYMTGTVDNISDKYGNDIAS 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            S +N   K F   +     +       T +  +D ++ +E     +        +    
Sbjct: 360 NSDSNI--KNFSSNSTSLAGNTTYDSYQTPTVVHDSMQSAEHIATAIDYDKVFGGRRTKG 417

Query: 420 SQTTDG 425
            +   G
Sbjct: 418 YEVMRG 423



 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 11/265 (4%)

Query: 337 LSKKMISSFHQDNAPKTHLP-------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           + +   S F ++   K + P       + ++ +  + E +       +T D+      ++
Sbjct: 420 VMRGETSQFVENLKTKGYTPPAPKATYEQSSFVDESFEAVPTAYTSYTTEDVEKFKSLSH 479

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
              N+ VEE    +        Q+   YI+++  D L I+DQHAAHER+ ++K+    +S
Sbjct: 480 DIRNEEVEERTIHNSGFLPM-GQVASCYILAKKGDDLYIIDQHAAHERVRYDKL--CKSS 536

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             I  Q++L P+  +  + E  L+ E  E L  LG   E  GP  I +   P  L +   
Sbjct: 537 ESIPMQSILVPQYNEATDDEMNLVEEEREILLDLGFDVELGGPTKIKLVGAPVDLVESKA 596

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            ++L+ +   + D       Q     +LA  +C G+I++G  +   +M  L+ ++     
Sbjct: 597 FEILQYVFSYLHDHQQPTKAQ-LRHEMLAYASCRGAIKAGHNLNMYQMTTLIEDLFSTEK 655

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRPT IK    ++ KLF R
Sbjct: 656 PYVCPHGRPTIIKFTPDELGKLFLR 680


>gi|225419752|ref|ZP_03762055.1| hypothetical protein CLOSTASPAR_06090 [Clostridium asparagiforme
           DSM 15981]
 gi|225041589|gb|EEG51835.1| hypothetical protein CLOSTASPAR_06090 [Clostridium asparagiforme
           DSM 15981]
          Length = 326

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 112/326 (34%), Positives = 183/326 (56%), Gaps = 5/326 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  IN+IAAGE+IERP+  +KEL+EN++DA+++ V   I  GG +  ++TDNG G
Sbjct: 4   ITVLDQNTINKIAAGEVIERPASVVKELLENAIDAQATAVTIEIKEGGTTLIRVTDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  ++I +A  RH TSKI   +D   + + GFRGEAL SI AV+ + L+++   + TG +
Sbjct: 64  IPKDQISLAFLRHATSKIKSVEDLFTVSSLGFRGEALASIAAVAQVELITKTGDSLTGFR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G     +  V    GT    R+LF+  PAR  FLK    E   + D++ ++A+++P
Sbjct: 124 YQIEGGTERGLEEVGAPDGTTFIARNLFYNTPARKKFLKRPVTEGAYVADLVEKIALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++S  F     N+    + S N N  + +  V G +   N + ++ ++ +I + G+ G P
Sbjct: 184 EISIRFIQNNQNKL---YTSGNHNLRDLVYTVYGREVTANLLPIDVQAQDIKVSGFIGKP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              RGN N    FINGR ++   I   I  AY   +   +YP  +L   I+P  +DVNVH
Sbjct: 241 LIARGNRNYENYFINGRYIKSSIISRAIEEAYKPYMMQHKYPFTLLHFSIEPEFLDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI 326
           P K  +RFR+  ++   ++ ++ +A+
Sbjct: 301 PTKMELRFRDGELMFKTVLNAVGEAL 326


>gi|154483534|ref|ZP_02025982.1| hypothetical protein EUBVEN_01238 [Eubacterium ventriosum ATCC
           27560]
 gi|149735444|gb|EDM51330.1| hypothetical protein EUBVEN_01238 [Eubacterium ventriosum ATCC
           27560]
          Length = 687

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/354 (35%), Positives = 193/354 (54%), Gaps = 5/354 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +  INQIAAGE+I+RP+  +KEL+EN++DA ++ +   I  GG S  +ITDNG 
Sbjct: 3   KIHVLDQNTINQIAAGEVIDRPASIVKELMENAIDAGATMISVEIKDGGTSLIRITDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I +A  RH TSKI    D  ++ + GFRGEAL SI +V  + L+++     TG 
Sbjct: 63  GIEKDDIKVAFLRHATSKIKTALDLISVSSLGFRGEALSSIASVCQVELITKTEDAITGI 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G K  +   +    GT   V+++FF  PAR  FLK+ Q E   I++++ ++A+++
Sbjct: 123 RYKIEGGKEVTFEEIGAPEGTTFIVKNIFFNTPARRKFLKTAQTEAGYISEIVEKIALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S +F      +      S NGN  + I  + G D  NN +E+N  +  I + GY G 
Sbjct: 183 PEISISFINNNQTKIH---TSGNGNLKDVIYNIYGRDIANNLLEINCSNEFIKMTGYIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              ++GN +    FINGR +++  I   I   Y   +   +YP   +  EID   +DVNV
Sbjct: 240 AIISKGNRSFENYFINGRYIKNNIISKAIEDGYKFILMQHKYPFTAINFEIDQDLLDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           HPAK  +RFR    I  FI+ SI   + +K       L+++  +      AP+ 
Sbjct: 300 HPAKMELRFRKGEAIYPFIMDSIHDTLVEKPNIIKVELNEEKPNEEKIARAPEP 353



 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 99/185 (53%), Gaps = 1/185 (0%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+ + Y I +    + I+DQHAAHE+++FEK+    +  +++SQ +  P I++L   E
Sbjct: 502 VGQVFETYWIVEYDGKMYIIDQHAAHEKVMFEKLMDRLSKKEVSSQMINPPIILNLSLNE 561

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             LI ++ ++   +G + E FG    A+R +PA L   +   +L  IID + +      +
Sbjct: 562 ANLINKYMDNFKEIGFEIEAFGGQDFAVRAVPADLYTLDSYDVLMQIIDNLSNE-NGRMV 620

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
            D I   +A+M+C  +++   KM + E N L+ ++    N   C HGRPT I +   +++
Sbjct: 621 PDMITEKIASMSCKAAVKGNNKMSTQEANALIDQLLSLENPYNCPHGRPTIISMSHYELD 680

Query: 590 KLFGR 594
           K F R
Sbjct: 681 KKFKR 685


>gi|15605304|ref|NP_220090.1| DNA mismatch repair protein [Chlamydia trachomatis D/UW-3/CX]
 gi|76789312|ref|YP_328398.1| DNA mismatch repair protein [Chlamydia trachomatis A/HAR-13]
 gi|237803004|ref|YP_002888198.1| DNA mismatch repair protein [Chlamydia trachomatis B/Jali20/OT]
 gi|237804926|ref|YP_002889080.1| DNA mismatch repair protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311394|ref|ZP_05353964.1| DNA mismatch repair protein [Chlamydia trachomatis 6276]
 gi|255317695|ref|ZP_05358941.1| DNA mismatch repair protein [Chlamydia trachomatis 6276s]
 gi|255348956|ref|ZP_05380963.1| DNA mismatch repair protein [Chlamydia trachomatis 70]
 gi|255503495|ref|ZP_05381885.1| DNA mismatch repair protein [Chlamydia trachomatis 70s]
 gi|8928218|sp|O84579|MUTL_CHLTR RecName: Full=DNA mismatch repair protein mutL
 gi|123606769|sp|Q3KLC2|MUTL_CHLTA RecName: Full=DNA mismatch repair protein mutL
 gi|3329017|gb|AAC68177.1| DNA Mismatch Repair [Chlamydia trachomatis D/UW-3/CX]
 gi|76167842|gb|AAX50850.1| MutL [Chlamydia trachomatis A/HAR-13]
 gi|231273226|emb|CAX10139.1| DNA mismatch repair protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274238|emb|CAX11032.1| DNA mismatch repair protein [Chlamydia trachomatis B/Jali20/OT]
 gi|296436109|gb|ADH18283.1| DNA mismatch repair protein [Chlamydia trachomatis G/9768]
 gi|296437037|gb|ADH19207.1| DNA mismatch repair protein [Chlamydia trachomatis G/11222]
 gi|296437969|gb|ADH20130.1| DNA mismatch repair protein [Chlamydia trachomatis G/11074]
 gi|297140470|gb|ADH97228.1| DNA mismatch repair protein [Chlamydia trachomatis G/9301]
 gi|297748705|gb|ADI51251.1| MutL [Chlamydia trachomatis D-EC]
 gi|297749585|gb|ADI52263.1| MutL [Chlamydia trachomatis D-LC]
          Length = 576

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 139/520 (26%), Positives = 246/520 (47%), Gaps = 14/520 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L    +NQI+AGE+IE  +  +KELIENSLDA +  +     GGG+    + DNG 
Sbjct: 7   RIRLLDSVTVNQISAGEVIENAASVVKELIENSLDAGADEIHIETLGGGRGQIVVRDNGV 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  EE+P+A+QRH TSKI+   D  ++ ++GFRGEALPSI ++S + + +       G+
Sbjct: 67  GMDPEEVPVALQRHATSKIAHFADIFSLASYGFRGEALPSIASISKMEIHTARAG-GLGS 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I   +     P     GT + V  LF+ +P R +F KS Q++   I  ++    ++ 
Sbjct: 126 KTLIEKGEPVCCEPAPRQQGTTIAVHSLFYNVPMRQSFQKSPQMDRLAIRRLLENSVLSS 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +T+    S   +  + +    F ER++ V+GE F+  A  ++++  ++ + G+ G 
Sbjct: 186 EGIGWTWI---SECRQELYVAKKQGFIERVALVLGESFVQEAFFIDKQQGDLRVLGFLGS 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R       +FIN R V+  FI   +  AYA  IP  RYP+ VL L + P   D NV
Sbjct: 243 PNQHRSTRQGQRLFINNRAVESSFISKKVAEAYAWMIPAQRYPIFVLKLFLPPMWCDFNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +R      I N ++++I +A+ ++  S    + K        +N   +      
Sbjct: 303 HPQKTEVRLLQEGQISNLLVEAISEALLRRSPSLEETVLKVPTEKIPIENEGISVPSIRP 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             ++         +      ++        +  +  V E       LG           +
Sbjct: 363 AIVSAPLSCPTFSQQPYLKTEMATIVSRDSASSSLSVVEKVRFLTSLGKVL--------L 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            + ++G+ +V   AA + L +  +  +   +++  QT L P  + + + E   +    E 
Sbjct: 415 VEDSEGVHVVFVQAARKHLFYVSLLSERLESRLACQTFLLPSSVQMTKLEADFLQMRLEA 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           L  LGI+  R  P++ AI   P  + ++ + + +  +  E
Sbjct: 475 LTALGIELSRISPDSFAIESAPPFIQEEELKEWIVALAQE 514


>gi|166154790|ref|YP_001654908.1| DNA mismatch repair protein [Chlamydia trachomatis 434/Bu]
 gi|166155665|ref|YP_001653920.1| DNA mismatch repair protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336065|ref|ZP_07224309.1| DNA mismatch repair protein [Chlamydia trachomatis L2tet1]
 gi|238687392|sp|B0B8E9|MUTL_CHLT2 RecName: Full=DNA mismatch repair protein mutL
 gi|238687441|sp|B0BA28|MUTL_CHLTB RecName: Full=DNA mismatch repair protein mutL
 gi|165930778|emb|CAP04275.1| DNA mismatch repair protein [Chlamydia trachomatis 434/Bu]
 gi|165931653|emb|CAP07229.1| DNA mismatch repair protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 576

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 138/520 (26%), Positives = 247/520 (47%), Gaps = 14/520 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L    +NQI+AGE+IE  +  +KELIENSLDA +  +     GGG+    + DNG 
Sbjct: 7   RIRLLDSVTVNQISAGEVIENAASVVKELIENSLDAGADEIHIETLGGGRGQIVVRDNGV 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  EE+P+A+QRH TSKI+   D  ++ ++GFRGEALPSI ++S + + +       G+
Sbjct: 67  GMDPEEVPVALQRHATSKIAHFADIFSLASYGFRGEALPSIASISKMEIHTARAG-GLGS 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I   +     P     GT + V  LF+ +P R +F KS Q++   I  ++    ++ 
Sbjct: 126 KTLIEKGEPVCCEPAPRQQGTTIAVHSLFYNVPMRQSFQKSPQMDRLAIRRLLENSVLSS 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +T+ + +     +   +    F ER++ V+GE F+  A  ++++  ++ + G+ G 
Sbjct: 186 EGIGWTWISERRQELHV---AKKQGFIERVALVLGESFVQEAFFIDKQQGDLRVLGFLGS 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R       +FIN R V+  FI   +  AYA  IP  RYP+ VL L + P   D NV
Sbjct: 243 PNQHRSTRQGQRLFINNRAVESSFISKKVAEAYAWMIPAQRYPIFVLKLFLPPMWCDFNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +R      I N ++++I +A+ ++  S   ++ K        +N   +      
Sbjct: 303 HPQKTEVRLLQEGQISNLLVEAISEALLRRSSSLEEIVLKVPTEKIPIENEGISVPSIRP 362

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             ++         +      ++        +  +  V E       LG           +
Sbjct: 363 AIVSAPLSCPTFSQQPYLKTEMATIVSRDSASSSLSVVEKVRFLTSLGKVL--------L 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            + ++G+ +V   AA + L +  +  +   +++  QT L P  + + + E   +    E 
Sbjct: 415 VEDSEGVHVVFVQAARKHLFYVSLLSERLESRLACQTFLLPPSVQMTKLEADFLQMRLEA 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           L  LGI+  R  P++ AI   P  + ++ + + +  +  E
Sbjct: 475 LTALGIELSRISPDSFAIESAPPFIQEEELKEWIVALAQE 514


>gi|149011044|ref|ZP_01832349.1| DNA mismatch repair protein [Streptococcus pneumoniae SP19-BS75]
 gi|147764680|gb|EDK71610.1| DNA mismatch repair protein [Streptococcus pneumoniae SP19-BS75]
          Length = 420

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/356 (33%), Positives = 198/356 (55%), Gaps = 5/356 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF+  +      +    +  G   + I+ + G       +E+     +  + G+  +P
Sbjct: 184 EISFSLISDGKEMTR---TAGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N   +FINGR +++  +   I   +   + +GR+P+ V+ + IDP   DVNVH
Sbjct: 241 ELTRANRNYISLFINGRYIKNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           P K  +R      +   + ++I  ++ ++ +   ++ +    +  +++   +T LP
Sbjct: 301 PTKQEVRISKEKELMTLVSEAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILP 356


>gi|255280935|ref|ZP_05345490.1| DNA mismatch repair protein MutL [Bryantella formatexigens DSM
           14469]
 gi|255268383|gb|EET61588.1| DNA mismatch repair protein MutL [Bryantella formatexigens DSM
           14469]
          Length = 743

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 128/405 (31%), Positives = 210/405 (51%), Gaps = 9/405 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I  L E+ I++IAAGE+IERP+  +KEL+EN++DA ++ V   I  GG S  +ITDN
Sbjct: 1   MREIAVLDEQTIDKIAAGEVIERPASIVKELVENAIDAGANAVTVEIKDGGISLIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ ++++P+A  RH TSKI   DD  ++ + GFRGEAL SI AV  + L+++   + T
Sbjct: 61  GSGIEAKQVPVAFWRHATSKIRKADDLLDVTSLGFRGEALSSIAAVCQVELITKTADSLT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G K  S+  +    GT   VR++F+  PAR  FLK+ Q E   I+D++ R+A+
Sbjct: 121 GVRYLIEGGKEKSLEEIGAPDGTTFLVRNIFYNTPARKKFLKTAQTEAGYISDMVERIAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VSF F      +      S N    + I  + G D   N +E++  ++ + + G+ 
Sbjct: 181 SHPEVSFKFIANNQTKLH---TSGNHQLKDIIYHIYGRDIAANLIEISAGTDSVRINGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    F+NGR ++   I   I  AY   +   +YP  VL   ID + +DV
Sbjct: 238 GKPVISRGNRNYENYFVNGRYIRSNIIAKAIEDAYHTFMMKHKYPFTVLNFTIDGKLLDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RF     +   + ++++ A+  + +     + K+      +   PK  LP 
Sbjct: 298 NVHPAKLELRFAENEEMYRIVYEAVRNALTHREMIVQVGIGKEEA---QKKETPKGRLPA 354

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
                   +    ++E      +  P         +   ++ +  
Sbjct: 355 PEPFEAVRRSLSQVRERPAYAKETAPGTAAAMQTASRRADDVDRM 399



 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 112/249 (44%), Gaps = 1/249 (0%)

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
            +  +  +  P+   +    Q +     N                   +  +     H +
Sbjct: 494 EEAASGNSAQPEAPATGNPVQAEKSASGNSAQPEAPAAGVTGEQMSLFEDDKLLSKEHVK 553

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                 Q+   Y I Q  D L ++DQHAAHE++++E+M++     + TSQ L  P I+ L
Sbjct: 554 EHRIIGQVFDTYWIVQFKDKLFLIDQHAAHEKVLYERMKKSMEKREFTSQLLNPPVILTL 613

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E  L+ ++ E    +G + E FG    A+R +P  L       L  +++D +   + 
Sbjct: 614 SMAEEELLKKYQERFREIGFEIEEFGGREYALRAVPDNLFGLADKDLFLEMLDGLSAQTD 673

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
             +++  I++ +ATM+C  +++   ++ + E++ L+ E+    N   C HGRPT I +  
Sbjct: 674 ALSIET-IDDKIATMSCKAAVKGNSRLSTAEIHALIDELLTLENPYNCPHGRPTIISMSK 732

Query: 586 SDIEKLFGR 594
            +IE+ F R
Sbjct: 733 YEIERKFKR 741


>gi|332685818|ref|YP_004455592.1| DNA mismatch repair protein MutL [Melissococcus plutonius ATCC
           35311]
 gi|332369827|dbj|BAK20783.1| DNA mismatch repair protein MutL [Melissococcus plutonius ATCC
           35311]
          Length = 735

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 208/376 (55%), Gaps = 19/376 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN++DA  ++++ +I   G    Q+ DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELMENAIDAGGTQIDILIEEAGLKKIQVVDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P A +RH TSKI   DD   I + GFRGEALPSI +VS +TL +       G+
Sbjct: 63  GIAKDDVPNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSISSVSEVTLETAVSNETEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G KI   R   +  GT + V +LFF  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 FIYLKGGKIMEHRSSTLRKGTKIVVSNLFFNTPARLKYVKTIQTELASIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P ++F+ +   +   KM   +  G   + I+ + G       + +  K  + +L GY  +
Sbjct: 183 PSIAFSLTHDGN---KMMHTTGKGELKQTIAGIYGVSIAKKMITIQAKDLDFSLTGYISL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   + +NGR +++  +   I   Y   + +GRYP+ +L + IDP  +DVNV
Sbjct: 240 PEVTRASRNYLSIIVNGRYIKNFILSKAILEGYGSKLMVGRYPIAILEISIDPLLIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--------------LSKKMISSF 345
           HP K  +R      +   + Q+I +A++++ +  ++V              + +  +SSF
Sbjct: 300 HPTKQEVRLSKEKELVQLVHQAIHEALSQEQLIPNAVENLTFKKKIEKPDKVEQLNLSSF 359

Query: 346 HQDNAPKTHLPKYATS 361
            ++ A  + LP    S
Sbjct: 360 EKEQAKNSSLPSSKKS 375



 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 101/230 (43%), Gaps = 3/230 (1%)

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNYIISQTTD 424
           E  F +++     ++   +            E+  +   +       Q+H  Y+ +Q +D
Sbjct: 502 ENYFSEKHATHLGNINNKNSIKTIHTEQETTETLNQKNRFPDLEYFGQMHGTYLFAQGSD 561

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           GL I+DQHAA ER+ +E  R+         Q LL P IID    +   I E  + L  +G
Sbjct: 562 GLYILDQHAAQERINYEYFREKIGEVTDDLQELLVPLIIDYPNTDVLKIKEKKDKLKDVG 621

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I  E F  N+  +R  P          ++R++ID ++ +    +++   E     M+C  
Sbjct: 622 IYLEDFDQNSFIVRSHPTWYPSGEEESIIREMIDILLTTGNI-SVKKFREETAIMMSCKQ 680

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +I++   +   +   LL ++    N   C HGRP  +    SD+EK+F R
Sbjct: 681 AIKANHFLNEKQARSLLEKLATCENPFNCPHGRPVLVHFTNSDMEKMFKR 730


>gi|167837738|ref|ZP_02464621.1| DNA mismatch repair protein [Burkholderia thailandensis MSMB43]
          Length = 345

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/323 (37%), Positives = 191/323 (59%), Gaps = 9/323 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALTRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFVTSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVAPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DIAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVH
Sbjct: 263 TASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVH 322

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQ 323
           P+K  +RFR+   I  F+  ++Q
Sbjct: 323 PSKIEVRFRDSRSIHQFVFHAVQ 345


>gi|182419526|ref|ZP_02950776.1| DNA mismatch repair protein MutL [Clostridium butyricum 5521]
 gi|182376613|gb|EDT74187.1| DNA mismatch repair protein MutL [Clostridium butyricum 5521]
          Length = 686

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/340 (36%), Positives = 189/340 (55%), Gaps = 5/340 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+E   N+IAAGE++ERPS  +KEL+ENS+DA S  +   I  GG S  +I D+G 
Sbjct: 3   RINILNEDTANKIAAGEVVERPSSVVKELVENSIDAASKNITIEIEDGGTSLIRIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I  A   H TSKI  S+D  NI T GFRGEALPSI +V+ + L S+   +  G 
Sbjct: 63  GVFKDDIKKAFMPHATSKITKSEDIYNISTLGFRGEALPSIASVAKVNLKSKTANSEYGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G K   V     N GTI+EVRDLFF +PAR  FLKS   E +LI D+I R+A+A 
Sbjct: 123 EINIEGGKFGDVYECGTNKGTIIEVRDLFFNVPARKKFLKSVSKEGSLINDIITRIALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K+     N +  + +  + G+   +N +   + S+ +T+ GY G 
Sbjct: 183 PDISFKLFNNHK---KVIHTFGNNDIKDTLRTIYGKSITDNIIYFEDSSDLVTIHGYVGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               RG+ N   +F+N R +++K +   +  A+     + ++P  VL +EI P  VDVN+
Sbjct: 240 EDIARGSRNNQSIFVNKRYIKNKSLAVAVEQAFKSFSTVNKFPFFVLFVEIYPEYVDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
           HP K+ I+F +  ++   I  ++  ++      + ++   
Sbjct: 300 HPTKAEIKFNDERMVFKKIFSAVHNSLKNDIFESFAIEED 339



 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 1/216 (0%)

Query: 379 NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
           +  L  D  T + +     + +   +       Q ++ YI+ +    L ++DQHAAHE++
Sbjct: 470 DQDLQKDSDTINYNEKVKYKEKIAKFPPISIIGQYNKTYILGEYDGTLYMIDQHAAHEKI 529

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIR 498
            FEK  +D  S  I  Q L+ P IIDL   + +   E+ E     G   E FG  +IA++
Sbjct: 530 YFEKYLKDIESGDIIVQPLMIPSIIDLTIDDYSYFEENKEIFKDAGFILEEFGGTSIALK 589

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           E+P  L K N  +L  +I+D + +     T + +   I AT AC  +I+   ++Q  EM 
Sbjct: 590 EVPYFLGKLNPKKLFIEILDNLKNLGNGKTTEVKHNAI-ATKACKSAIKGNDELQINEMV 648

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +L+ ++    +   C HGRP  IK   +DI+K F R
Sbjct: 649 KLIEDLRYIDDPFHCPHGRPIIIKFTSTDIDKKFKR 684


>gi|312438323|gb|ADQ77394.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 388

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 202/380 (53%), Gaps = 8/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HP K  +R      +   I+  IQ+A   + +   +      K I  +   N  K++L K
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKIKCYIHSNNKKSNLNK 358

Query: 358 YATSLTNTQEKLFLQENRLS 377
             T   N + +  L++  +S
Sbjct: 359 DKTQRINKRRRFHLKKVTVS 378


>gi|313618993|gb|EFR90827.1| DNA mismatch repair protein MutL [Listeria innocua FSL S4-378]
          Length = 331

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 124/328 (37%), Positives = 191/328 (58%), Gaps = 6/328 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHLTL +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLTLETST-GETKGTT 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF FS        +   + NG+  + I+ + G      ++ +  +S +  + GY  +P
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGVSIARKSIPVKAESLDFKISGYAVLP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL +E+DP  VDVNVH
Sbjct: 241 EVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           PAK  +R      +   I Q I+ A ++
Sbjct: 301 PAKLEVRLSKEKELGQLISQMIKDAFHQ 328


>gi|284024289|ref|ZP_06378687.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304381139|ref|ZP_07363792.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|172087939|emb|CAQ35205.1| truncated DNA mismatch repair protein MutL [Staphylococcus aureus
           subsp. aureus]
 gi|304340122|gb|EFM06063.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329727828|gb|EGG64279.1| DNA mismatch repair protein, C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 388

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 201/380 (52%), Gaps = 8/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HP K  +R      +   I+  IQ+A   + +   +      K I  +   N  K++L K
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKIKYYIHSNNKKSNLNK 358

Query: 358 YATSLTNTQEKLFLQENRLS 377
             T     + +  L++  +S
Sbjct: 359 DKTQRITKRRRFHLKKVTVS 378


>gi|172087937|emb|CAQ35204.1| truncated DNA mismatch repair protein MutL [Staphylococcus aureus
           subsp. aureus]
 gi|172087941|emb|CAQ35206.1| truncated DNA mismatch repair protein MutL [Staphylococcus aureus
           subsp. aureus]
 gi|312829690|emb|CBX34532.1| DNA mismatch repair protein mutL. domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
          Length = 388

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 201/380 (52%), Gaps = 8/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HP K  +R      +   I+  IQ+A   + +   +      K I  +   N  K++L K
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKIKYYIHSNNKKSNLNK 358

Query: 358 YATSLTNTQEKLFLQENRLS 377
             T     + +  L++  +S
Sbjct: 359 DKTQRITKRRRFHLKKVTVS 378


>gi|307292184|ref|ZP_07572049.1| DNA mismatch repair protein [Enterococcus faecalis TX0411]
 gi|306496759|gb|EFM66311.1| DNA mismatch repair protein [Enterococcus faecalis TX0411]
          Length = 710

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 224/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQTIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  PV  +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSATVDSANHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|256960506|ref|ZP_05564677.1| MutL [Enterococcus faecalis Merz96]
 gi|293385299|ref|ZP_06631115.1| DNA mismatch repair protein HexB [Enterococcus faecalis R712]
 gi|293389688|ref|ZP_06634132.1| DNA mismatch repair protein HexB [Enterococcus faecalis S613]
 gi|312906650|ref|ZP_07765650.1| DNA mismatch repair protein [Enterococcus faecalis DAPTO 512]
 gi|312910890|ref|ZP_07769725.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
 gi|256951002|gb|EEU67634.1| MutL [Enterococcus faecalis Merz96]
 gi|291077499|gb|EFE14863.1| DNA mismatch repair protein HexB [Enterococcus faecalis R712]
 gi|291080935|gb|EFE17898.1| DNA mismatch repair protein HexB [Enterococcus faecalis S613]
 gi|310627298|gb|EFQ10581.1| DNA mismatch repair protein [Enterococcus faecalis DAPTO 512]
 gi|311288758|gb|EFQ67314.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
          Length = 710

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 137/435 (31%), Positives = 225/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  PV  +  T  Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPETVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + K + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAVDSANHWETSSNEQQIIAKETKVTKVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|307243917|ref|ZP_07526042.1| DNA mismatch repair protein, C-terminal domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492739|gb|EFM64767.1| DNA mismatch repair protein, C-terminal domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 686

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 128/400 (32%), Positives = 214/400 (53%), Gaps = 6/400 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L +  IN+IAAGE+IERPS  IKE++ENSLDA +  +   I   GK   ++ D+G 
Sbjct: 3   RINILDDSTINKIAAGEVIERPSSIIKEVVENSLDAGAKNITIQIENAGKDMIKVIDDGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +++I  A  RH TSKI   +D SN+H+ GFRGEAL SI A+S + ++++      G 
Sbjct: 63  GIEADDINKAFLRHATSKIRRAEDLSNLHSLGFRGEALASIAAISKVDMVTKTEDALMGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I+G KI S  P+  N GT + V+DLF+ +PAR  FLKS   E   ITD++ ++AI  
Sbjct: 123 RILINGGKIESKNPIGANRGTQLIVKDLFYNVPARRKFLKSNHAEIINITDLVNKLAIGN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VS  +       ++      + N    I  + G+D  ++ ++++ +S+   + GY   
Sbjct: 183 PGVSIKYINNGKTIFETI---GDSNLYNAIRMIYGKDTSDHLIKIDYQSSYYKIDGYIAN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R N N   +FINGR V+   I++ I +AY + IP+ +YPV  + LEIDP ++DVN+
Sbjct: 240 NNVYRSNRNNQLIFINGRYVKSPNIMNAINSAYKDIIPINKYPVYFINLEIDPGKIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT-HLPKY 358
           HP+K  ++F N   I   +   ++  + K  +        +   ++  +   ++     Y
Sbjct: 300 HPSKLEVKFDNEGPILEDLGDYVRGTLLKNSLIGRYRSKDRPAKTYESNETFRSFDSFSY 359

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           + +       L  +  + +      S  P + +  + ++E
Sbjct: 360 SKNEQKENSDLVRENGKSAFISEDDSGKPGHIDCKNSIQE 399



 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 3/199 (1%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
           S    ++       +   YI+   +D L ++DQHAAHER+ FE   + F S  I  Q LL
Sbjct: 486 STRPEFEGLNYIGIVFNTYILFSKSDQLYMMDQHAAHERVRFEMYMKSFKSDSIRIQYLL 545

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P I+DL   +  + + + +   R G   E FG   I++R +P    +    + + ++ID
Sbjct: 546 DPIIMDLSPTDMEVAIRNIDLFERYGFIVEAFGHKNISVRGLPNTFGRPESEKFIYELID 605

Query: 519 EIIDSSTTYTLQDRIENI---LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           + +D   +       ++    +A MAC  +I++  K+   E+  LL  ++K  N   C H
Sbjct: 606 KFLDLDKSSKRDSIYDSKYDQIAEMACKSAIKANDKLDYNEVMALLESLKKCDNPYTCPH 665

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRP  + +   DIEK+F R
Sbjct: 666 GRPVMVSMTKYDIEKMFKR 684


>gi|227554584|ref|ZP_03984631.1| DNA mismatch repair protein [Enterococcus faecalis HH22]
 gi|227176261|gb|EEI57233.1| DNA mismatch repair protein [Enterococcus faecalis HH22]
          Length = 710

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KLSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQKLSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|172087929|emb|CAQ35200.1| truncated DNA mismatch repair protein MutL [Staphylococcus aureus
           subsp. aureus]
          Length = 388

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 201/380 (52%), Gaps = 8/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I +   +I + +P     GT + V  LF+  PARL ++KS   E   ITD++ RMA+++
Sbjct: 122 EIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMSH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +     +        N    +G   E ++++ G     + V ++  +++  ++G+   
Sbjct: 182 PDIRIALISDGKTMLSTN---GSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAK 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R N +   +FINGR +++  +   I   Y   + +GR+P+  + +E+DP  VDVNV
Sbjct: 239 PEHSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS--VLSKKMISSFHQDNAPKTHLPK 357
           HP K  +R      +   I+  IQ+A   + +   +      K I  +   N  K++L K
Sbjct: 299 HPTKLEVRLSKEEQLYQLIVSKIQEAFKDRILIPKNNLDYVPKKIKCYIHSNNKKSNLNK 358

Query: 358 YATSLTNTQEKLFLQENRLS 377
             T     + +  L++  +S
Sbjct: 359 DKTQRITKRRRFHLKKVTVS 378


>gi|257420393|ref|ZP_05597383.1| DNA mismatch repair protein hexB [Enterococcus faecalis X98]
 gi|257162217|gb|EEU92177.1| DNA mismatch repair protein hexB [Enterococcus faecalis X98]
 gi|315154584|gb|EFT98600.1| DNA mismatch repair protein [Enterococcus faecalis TX0043]
          Length = 710

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 137/435 (31%), Positives = 225/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  PV  +  T  Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPETVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAVDSANHWETASNEQQIIAKETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSATSQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|325283793|ref|YP_004256334.1| DNA mismatch repair protein mutL [Deinococcus proteolyticus MRP]
 gi|324315602|gb|ADY26717.1| DNA mismatch repair protein mutL [Deinococcus proteolyticus MRP]
          Length = 557

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 140/601 (23%), Positives = 248/601 (41%), Gaps = 73/601 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++  QIAAGE++ RP   ++EL+EN+LDA ++R+E  + GGG     + DNG G
Sbjct: 7   IRLLPPEVARQIAAGEVVSRPLDVLRELLENALDAGATRLEIEVEGGGLRRVAVRDNGRG 66

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + + E+ +A  RH TSK+      + T GFRGEAL +      LTL++RP     GA + 
Sbjct: 67  IPAGEVGLAPLRHATSKLPGGLDEVSTLGFRGEALWAAAQAGTLTLLTRPA-AQVGATLL 125

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
            +      V   +   GT   V  LF  +PARL        E   +  ++ R  + +P++
Sbjct: 126 TAQGDAVEVARASAPAGTTAAVEGLFAAMPARLRAQAPAAAEVREMVALLGRYVLHHPEL 185

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           S+  +       ++      G+F   ++ V G    N  + +          G    P  
Sbjct: 186 SWRLAVDG----EIRLGHAPGDFRGGVATVYGPVSANRVLAVEAAGIA----GVISRPEL 237

Query: 243 NRGNANQFYVFINGRTVQDKF-ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            R   ++ +  +NGR VQ    +   +   Y E +P G  P+ VL L + P + + N+HP
Sbjct: 238 TRARRDRLHFAVNGRPVQPPADLEEAVLAGYGELLPSGAAPLTVLNLSVPPAEHNPNIHP 297

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           +K  +       +   +  ++ +A+               + +      P    P     
Sbjct: 298 SKQLVALAELPALAEQVRAAVAQALAGV----------PHVRALPDLRVPAESAPGAVQD 347

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
               ++  F +                                          + Y++++
Sbjct: 348 PAELRQGTFPE----------------------------------MRLLGVYQELYLLAE 373

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
           +   L ++D HAAHER ++E++++      +    L  PE++ L   + A + E    L 
Sbjct: 374 SEGDLWVIDGHAAHERALYERLQRGVAE--LPPFELPAPELLHLTPEQAARLEERAAALA 431

Query: 482 RLGIKAERFGPNAI-----AIREIPAILSKKNIPQL---LRDIIDEIIDSSTTYTLQDRI 533
             G+  E FG   +      +R +PA L+   +  L   + DI   + D+          
Sbjct: 432 AWGLVIEPFGAGPVGGRLARLRSLPASLAALPVADLNAHVVDIA--LGDTDDPQ------ 483

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
             +LA +AC  ++++GR +       +L  + +      C HGRPT ++L   D+   FG
Sbjct: 484 RTLLARLACLPALKAGR-LDDQNGAEVLAMLAQCSQPWACPHGRPTTLRLSERDLAHTFG 542

Query: 594 R 594
           R
Sbjct: 543 R 543


>gi|315167037|gb|EFU11054.1| DNA mismatch repair protein [Enterococcus faecalis TX1341]
          Length = 710

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 224/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  PV  +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSATVDSENHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|221068566|ref|ZP_03544671.1| DNA mismatch repair protein MutL [Comamonas testosteroni KF-1]
 gi|220713589|gb|EED68957.1| DNA mismatch repair protein MutL [Comamonas testosteroni KF-1]
          Length = 742

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 206/385 (53%), Gaps = 7/385 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LD+ + ++   +  GG     + D+G 
Sbjct: 28  PIRDLPDELISQIAAGEVVERPASVVRELVDNALDSGAGQITVRLLAGGVRLIAVEDDGC 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKISD  D   + T GFRGEAL +I +VS  ++ SRP   ++  
Sbjct: 88  GIPRDELPVALRRHATSKISDLHDLETVATMGFRGEALAAIASVSETSIFSRPAGQDSAY 147

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A N GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 148 LLDARSGEL---RPAARNQGTTVEVKELFFSTPARRKFLKTDATELAHCIESVRRHALAR 204

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V F          +     +  +     R++ V+ + F++N+V ++  +  + + G  
Sbjct: 205 PDVGFAIWHEGKLVEQWRAAGSTPDEALSRRLADVLNDKFVDNSVAVDHWAGPVHVTGRA 264

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           GIP   R   +Q + ++NGR V+DK +    R+AY + +   + PV  L +EIDP +VDV
Sbjct: 265 GIPDAARSRPDQQFCYVNGRFVRDKVLTHAARSAYEDVLHGNKQPVYALYIEIDPARVDV 324

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RFR+   +   +  +I+ A+     +     + +  +         T  P 
Sbjct: 325 NVHPTKIEVRFRDSREVHQAVRHAIENALATPRAAAVVEAAAQEAARQPGLIDESTATPV 384

Query: 358 YATSLTNTQEKLFLQENRLSTNDLL 382
            A + T         + R+S  +  
Sbjct: 385 PAKAATKPAAAPAWPQTRMSFGEPA 409



 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 86/262 (32%), Positives = 134/262 (51%), Gaps = 6/262 (2%)

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           L     SS+ Q  AP   + +   +             R +    +P+            
Sbjct: 481 LRPSGQSSYFQRKAPAPRMQEAPAATVIVAATPPSATARPTAEAAMPAAVAPQQPATAAA 540

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN----STKI 452
           +   A  + LG A AQ+H  YI+++ + G+VIVD HAAHER+++E+++   N      +I
Sbjct: 541 D--SAPVWPLGRAVAQLHGVYILAENSQGMVIVDMHAAHERIVYEQLKNAVNTENGDQQI 598

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            SQ LL P        E A    H E L  LG++   F P  +A+R +PA L++ +  +L
Sbjct: 599 PSQPLLIPATFAATPEEVATAEAHAETLLILGMEVSPFSPKTLAVRAVPATLAQGDAVEL 658

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
            R ++ E+     +  +Q     ILATMAC+G++R+ RK+   EMN LLR+ME    S Q
Sbjct: 659 ARSVLAELAQHDASTVVQRARNEILATMACHGAVRANRKLTLDEMNALLRQMEVTERSDQ 718

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           CNHGRPT+ +L + +++ LF R
Sbjct: 719 CNHGRPTWRQLSMKELDALFLR 740


>gi|56752322|ref|YP_173023.1| DNA mismatch repair protein [Synechococcus elongatus PCC 6301]
 gi|81300589|ref|YP_400797.1| DNA mismatch repair protein [Synechococcus elongatus PCC 7942]
 gi|56687281|dbj|BAD80503.1| DNA mismatch repair protein MutL [Synechococcus elongatus PCC 6301]
 gi|81169470|gb|ABB57810.1| DNA mismatch repair protein MutL [Synechococcus elongatus PCC 7942]
          Length = 541

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 143/596 (23%), Positives = 255/596 (42%), Gaps = 76/596 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L    + ++AAGE+I+  +  ++EL ENSLDA + R+   +    +   ++ D+G 
Sbjct: 6   TIQPLPAPWVARMAAGEVIDSLAAVVRELCENSLDAGTQRLVIDLW-PEQWRVRVADDGM 64

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G++ E + +A   H +SK+S D       GFRGEAL S+  +  LT+ SR      G QI
Sbjct: 65  GLSLENLQLAALAHTSSKLSPDRFTAEQLGFRGEALHSLARLGRLTIASRTADAAAGWQI 124

Query: 122 AISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +     P+A+ PG IVEV+ LF     R     S   +   +   I+ + +A+P
Sbjct: 125 SYDIGGQPQVATPIAIAPGCIVEVQQLFQDWLERRQSQPSPAQQLRAVQQQIQNLVLAHP 184

Query: 181 KVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            ++   +                    + +      D+ + +++L  +     LQ   G+
Sbjct: 185 SITVQVTQNDRPWLAFAPVHHPQERLLQLLPNTSPADWRSQSLDLGSEG---QLQVVVGL 241

Query: 240 P-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           P   +R   +   V +NGR V+   +   +  A   ++P  R+PVV   L++ P QVD +
Sbjct: 242 PDRCHRRRPDWVKVAVNGRVVRVSELEQAMIGALHRSLPRDRFPVVFAHLQVPPSQVDWH 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            HPAK+ +  ++  +    I ++I + +              +  +   +    T L + 
Sbjct: 302 RHPAKAELFLQDLPVWCERIQEAIAQTL-------------PLDPAEEIELPASTALLRV 348

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           A +  +  E                                         A AQ+   Y+
Sbjct: 349 AETTGSYSESPS-----------------------------------HLRAIAQVLNTYV 373

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++  D L +++QH AHER++FE+++ D+         LL+            L +E   
Sbjct: 374 LAEQGDSLWLIEQHIAHERVLFEQLQDDWQLVACQQPILLSK-----------LSLEQRL 422

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L RLGI AE FG +  AIR IPA L+++       D+++ +++ S  + L        A
Sbjct: 423 QLDRLGITAEDFGEDLWAIRHIPAALAQRE------DLVEALLELSRGWDLS----AAQA 472

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +AC  +IR+G  +   E   L+   +       C HGRP  + L  + + + F R
Sbjct: 473 AIACRTAIRNGTLLYPEEQQTLIDRWQHCRQPRTCPHGRPIALVLPETSLARYFRR 528


>gi|256618084|ref|ZP_05474930.1| MutL [Enterococcus faecalis ATCC 4200]
 gi|256597611|gb|EEU16787.1| MutL [Enterococcus faecalis ATCC 4200]
 gi|315031847|gb|EFT43779.1| DNA mismatch repair protein [Enterococcus faecalis TX0017]
          Length = 710

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 224/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  PV  +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSATVDSENHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPIERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|227517231|ref|ZP_03947280.1| DNA mismatch repair protein [Enterococcus faecalis TX0104]
 gi|227075328|gb|EEI13291.1| DNA mismatch repair protein [Enterococcus faecalis TX0104]
          Length = 710

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 136/435 (31%), Positives = 224/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  PV  +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPVSSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/269 (26%), Positives = 120/269 (44%), Gaps = 9/269 (3%)

Query: 334 SSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN---DLLPSD 385
            S    +  S+  Q   +    T +P    SL +++  +++F +E +L      +   S 
Sbjct: 438 DSANHWETASNEQQIIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPEFDANSAASQ 497

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                  N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA ER+ +E  R+
Sbjct: 498 RELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQERIKYEYFRE 557

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                    Q LL P +ID    +   I E  E L  +GI  E FG N+  +R  P    
Sbjct: 558 KIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFIVRAHPTWYP 617

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
                 ++R++ID ++ +  + +++   E     M+C  SI++   +   +   LL+++ 
Sbjct: 618 AGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQARVLLKDLA 676

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              N   C HGRP  I    SD+E++F R
Sbjct: 677 LCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|15618721|ref|NP_225007.1| DNA mismatch repair protein [Chlamydophila pneumoniae CWL029]
 gi|15836345|ref|NP_300869.1| DNA mismatch repair protein [Chlamydophila pneumoniae J138]
 gi|16752228|ref|NP_445596.1| DNA mismatch repair protein [Chlamydophila pneumoniae AR39]
 gi|33242172|ref|NP_877113.1| DNA mismatch repair protein [Chlamydophila pneumoniae TW-183]
 gi|8928240|sp|Q9Z794|MUTL_CHLPN RecName: Full=DNA mismatch repair protein mutL
 gi|4377124|gb|AAD18950.1| DNA Mismatch Repair [Chlamydophila pneumoniae CWL029]
 gi|7189973|gb|AAF38832.1| DNA mismatch repair protein mutL [Chlamydophila pneumoniae AR39]
 gi|8979186|dbj|BAA99020.1| DNA mismatch repair [Chlamydophila pneumoniae J138]
 gi|33236683|gb|AAP98770.1| MutL [Chlamydophila pneumoniae TW-183]
          Length = 580

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 156/549 (28%), Positives = 264/549 (48%), Gaps = 20/549 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L    INQIAAGE+IE     +KELIENSLDA +  +E    GGG+    I DNG 
Sbjct: 6   PIQLLDPLTINQIAAGEVIENSVSVVKELIENSLDAGADEIEIETLGGGQGAIIIRDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G  +E+IP+A+QRH TSKI +  D  ++++FGFRGEALPSI ++S + + S    +  G 
Sbjct: 66  GFRAEDIPIALQRHATSKIREFSDIFSLNSFGFRGEALPSIASISKMEIQSSIEGDE-GV 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G  I S  P A   GT V V  LF+ +P R  F KS Q +   I  +I    ++ 
Sbjct: 125 RTVIHGGDIVSCEPCARQLGTTVIVNSLFYNVPVRRGFQKSMQSDRLGIRKLIENRILST 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +++ +   +  ++   +    F ER++ V+G+ F+ +A+ +++++N + + G  G 
Sbjct: 185 ANIGWSWISEGHHEIQI---AKQQGFQERVAYVMGDHFMQDALTIDKEANGVRIVGVLGS 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+F+R       +FIN R ++  FI   +  AYA  +PL RYPV VL L +     D NV
Sbjct: 242 PSFHRPTRQGQKIFINDRPIESLFISKKVGDAYALLLPLHRYPVFVLKLYLPSSWCDFNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K   R     ++ + I ++I + +         +L +        D+ P        
Sbjct: 302 HPQKIEARILKEELVGDCIKEAIVETLAC----PPGILCRTHQEIEESDSVPLPMFRMLE 357

Query: 360 TSLTNTQEKLFLQEN---RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
           TS    +E +   +N     S +  L   + T       ++   ++  +   +  ++   
Sbjct: 358 TSDVQEEESVEFDQNLFAYSSEDVSLEKQEYTSRGPKSQMDWIYSSDVRFLTSLGRV--- 414

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
            ++++  +G+ I+   AA + L F  + Q+ NS    SQ LL P  + +   E      H
Sbjct: 415 -VLAEDLEGVHIIFTAAARKHLFFLSLMQE-NSRMYQSQALLIPLRLQVTPEEAFFFSHH 472

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L  LGI+  + GP   +I   P ++ ++ + + L  +         +  L   ++  
Sbjct: 473 GRTLCDLGIEISQVGPCVFSIESTPTVIGEEELKEWLLLLAARGSTDINSEALTALMKET 532

Query: 537 L--ATMACY 543
           L  AT + +
Sbjct: 533 LTQATFSKH 541


>gi|269302603|gb|ACZ32703.1| DNA mismatch repair protein MutL [Chlamydophila pneumoniae LPCoLN]
          Length = 580

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 155/546 (28%), Positives = 261/546 (47%), Gaps = 14/546 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L    INQIAAGE+IE     +KELIENSLDA +  +E    GGG+    I DNG 
Sbjct: 6   PIQLLDPLTINQIAAGEVIENSVSVVKELIENSLDAGADEIEIETLGGGQGAIIIRDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G  +E+IP+A+QRH TSKI +  D  ++++FGFRGEALPSI ++S + + S    +  G 
Sbjct: 66  GFRAEDIPIALQRHATSKIREFSDIFSLNSFGFRGEALPSIASISKMEIQSSIEGDE-GV 124

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I G  I S  P A   GT V V  LF+ +P R  F KS Q +   I  +I    ++ 
Sbjct: 125 RTVIHGGDIVSCEPCARQLGTTVIVNSLFYNVPVRRGFQKSMQSDRLGIRKLIENRILST 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +++ +   +  ++   +    F ER++ V+G+ F+ +A+ +++++N + + G  G 
Sbjct: 185 ANIGWSWISEGHHEIQI---AKQQGFQERVAYVMGDHFMQDALTIDKEANGVRIVGVLGS 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+F+R       +FIN R ++  FI   +  AYA  +PL RYPV VL L +     D NV
Sbjct: 242 PSFHRPTRQGQKIFINDRPIESLFISKKVGDAYALLLPLHRYPVFVLKLYLPSSWCDFNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K   R     ++ + I ++I + +         +L +        D+ P        
Sbjct: 302 HPQKIEARILKEELVGDCIKEAIVETL----TCPPGILCRTHQEIEESDSVPLPMFRMLE 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           TS    +E +   +N  + +    S +        P  + +  +         + +  ++
Sbjct: 358 TSDVQEEESVEFNQNLFAYSSEDVSLEKQEYTSRGPKSQMDWMYSSDVRFLTSLGRV-VL 416

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  +G+ I+   AA + L F  + Q+ NS    SQ LL P  + +   E      H   
Sbjct: 417 AEDLEGVHIIFTAAARKHLFFLSLMQE-NSRMYQSQALLIPLRLQVTPEEAFFFSHHGRT 475

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL-- 537
           L  LGI+  + GP   +I   P ++ ++ + + L  +         +  L   ++  L  
Sbjct: 476 LCDLGIEISQVGPCVFSIESTPTVIGEEELKEWLLLLAARGSTDINSEALTALMKETLTQ 535

Query: 538 ATMACY 543
           AT + +
Sbjct: 536 ATFSKH 541


>gi|14577936|gb|AAK68861.1| HexB [Lactococcus lactis]
          Length = 323

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/324 (36%), Positives = 185/324 (57%), Gaps = 5/324 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+E + NQIAAGE++ERP+  +KEL+ENS+DA SS++   +   G    ++ DNG 
Sbjct: 3   KIIELNEALANQIAAGEVVERPATVVKELVENSIDAGSSKIIINVEEAGLRLIEVIDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A++RH TSKI D  D   I T GFRGEALPSI +VS +T+ +   +  +G 
Sbjct: 63  GLEKEDVALALRRHATSKIKDSADLFRIRTLGFRGEALPSIASVSQMTIETSTAEEESGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G  I ++ P+A   GT + V +LF+  PARL ++KS Q E + ITD+I R+++A+
Sbjct: 123 KLVAKGGNIETLEPLAKRVGTKISVANLFYNTPARLKYIKSLQAELSHITDIINRLSLAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SFT         K    + NG+  + I+ + G        ++     +  L GY  +
Sbjct: 183 PEISFTLVNEGKEFLK---TAGNGDLRQVIAAIYGIGTAKKMRQIKGSDLDFELTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   + INGR +++  +   I   Y   + +GR+P  +L ++IDP   DVNV
Sbjct: 240 PELTRANRNYITILINGRFIKNFLLNRAILEGYGNRLMVGRFPFAILSIKIDPTLADVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQ 323
           HP K  +R      +   I ++I 
Sbjct: 300 HPTKQEVRLSKERELMALISKAID 323


>gi|225027642|ref|ZP_03716834.1| hypothetical protein EUBHAL_01901 [Eubacterium hallii DSM 3353]
 gi|224954956|gb|EEG36165.1| hypothetical protein EUBHAL_01901 [Eubacterium hallii DSM 3353]
          Length = 731

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 131/391 (33%), Positives = 197/391 (50%), Gaps = 10/391 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR L +  INQIAAGE++ERPS  +KEL+EN++DA S+ V   I GGG  F +ITDN
Sbjct: 1   MPEIRVLDQSTINQIAAGEVVERPSSIVKELVENAVDANSTAVTVEIKGGGIDFIRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  E++  A   H TSKI    D   + + GFRGEAL SI +V+ + L+++  +  +
Sbjct: 61  GCGIEKEQVRKAFLPHATSKIRSASDLETVVSLGFRGEALSSIASVAKVELVTKTDEGIS 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G +  S   +    GT   +R+LFF  PAR  FLKS+  E   +   I+R+A+
Sbjct: 121 GIRYVIEGGEEKSYDEIGCPEGTTFIIRNLFFNTPARRKFLKSKMTEAGYVESFIQRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F     N+      S NGN  + I  + G D   N + +    N I + GY 
Sbjct: 181 SHPDISFKFICDNKNK---ISTSGNGNLKDVIYNIFGRDVAMNLLPVKGNENGILVDGYI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P  +RGN N    F+NGR +++  I   I   Y     + ++P   L++ +DP   D 
Sbjct: 238 GKPVISRGNRNYENYFVNGRYLKNNIISKAIEEGYKGHAMVHKFPFTALMISMDPHCFDA 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK  +RFRN   + + ++ +++ +  KK +     +             P+    K
Sbjct: 298 NVHPAKMEMRFRNAEELYSSVMSAVRSSFVKKELIPKVGIGNDKKEKESVKKIPEPFERK 357

Query: 358 YATSLTN----TQEKLFLQENRLSTNDLLPS 384
                      +QEK+   E R    D    
Sbjct: 358 RRAIEERFSSLSQEKIREIEKRKEQGDAAEQ 388



 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 5/240 (2%)

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP----VEESEATHYQLGIACAQIH 414
           A   + + ++   Q+ + S    L  +  TY +        V               Q+ 
Sbjct: 491 AEEYSESDDRQIKQDKKPSGQKELLKEADTYGKGTQMSFADVPLLSEEARPKHRIIGQVF 550

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           + Y + +  + L  VDQHAAHE++++EK+++D  +  I  Q +  P I+     E     
Sbjct: 551 RTYWLVEFDEKLFFVDQHAAHEKVMYEKLKKDLENNTIVQQMVAPPVILTFSIKEQQKFK 610

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
             +E   +LG   E FG N   IR +PA L   +  +L  +I D+I ++S    L+  I 
Sbjct: 611 ICEESFKKLGFLIEEFGGNEYCIRGVPANLLGIDPQELFIEIFDQIEENSGKMNLE-MIT 669

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + LATMAC  +++    M   EM+ L+ ++ K  N  QC HGRPT I +   ++EK F R
Sbjct: 670 DRLATMACKAAVKGNTAMSYQEMDALMDQLMKLDNPYQCPHGRPTIISMTKYELEKKFKR 729


>gi|329577814|gb|EGG59237.1| DNA mismatch repair protein [Enterococcus faecalis TX1467]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 224/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I+D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANISDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|29377616|ref|NP_816770.1| DNA mismatch repair protein [Enterococcus faecalis V583]
 gi|257418005|ref|ZP_05594999.1| DNA mismatch repair protein mutL [Enterococcus faecalis T11]
 gi|307288399|ref|ZP_07568390.1| DNA mismatch repair protein [Enterococcus faecalis TX0109]
 gi|29345083|gb|AAO82840.1| DNA mismatch repair protein HexB [Enterococcus faecalis V583]
 gi|257159833|gb|EEU89793.1| DNA mismatch repair protein mutL [Enterococcus faecalis T11]
 gi|306500631|gb|EFM69957.1| DNA mismatch repair protein [Enterococcus faecalis TX0109]
 gi|315573187|gb|EFU85378.1| DNA mismatch repair protein [Enterococcus faecalis TX0309B]
 gi|315581311|gb|EFU93502.1| DNA mismatch repair protein [Enterococcus faecalis TX0309A]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|300861473|ref|ZP_07107557.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|295114466|emb|CBL33103.1| DNA mismatch repair protein MutL [Enterococcus sp. 7L76]
 gi|300848934|gb|EFK76687.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|315144209|gb|EFT88225.1| DNA mismatch repair protein [Enterococcus faecalis TX2141]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 224/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +  +  Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPESVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAVDSANHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|255970642|ref|ZP_05421228.1| DNA mismatch repair protein mutL [Enterococcus faecalis T1]
 gi|257088270|ref|ZP_05582631.1| MutL [Enterococcus faecalis D6]
 gi|307276608|ref|ZP_07557726.1| DNA mismatch repair protein [Enterococcus faecalis TX2134]
 gi|312953267|ref|ZP_07772112.1| DNA mismatch repair protein [Enterococcus faecalis TX0102]
 gi|255961660|gb|EET94136.1| DNA mismatch repair protein mutL [Enterococcus faecalis T1]
 gi|256996300|gb|EEU83602.1| MutL [Enterococcus faecalis D6]
 gi|306506718|gb|EFM75870.1| DNA mismatch repair protein [Enterococcus faecalis TX2134]
 gi|310628804|gb|EFQ12087.1| DNA mismatch repair protein [Enterococcus faecalis TX0102]
 gi|315026535|gb|EFT38467.1| DNA mismatch repair protein [Enterococcus faecalis TX2137]
 gi|315152837|gb|EFT96853.1| DNA mismatch repair protein [Enterococcus faecalis TX0031]
 gi|323479095|gb|ADX78534.1| DNA mismatch repair protein mutL [Enterococcus faecalis 62]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSATSQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|315164364|gb|EFU08381.1| DNA mismatch repair protein [Enterococcus faecalis TX1302]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 133/421 (31%), Positives = 220/421 (52%), Gaps = 9/421 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 S 420
            
Sbjct: 416 P 416



 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|256958441|ref|ZP_05562612.1| MutL [Enterococcus faecalis DS5]
 gi|257078247|ref|ZP_05572608.1| MutL [Enterococcus faecalis JH1]
 gi|307270518|ref|ZP_07551816.1| DNA mismatch repair protein [Enterococcus faecalis TX4248]
 gi|256948937|gb|EEU65569.1| MutL [Enterococcus faecalis DS5]
 gi|256986277|gb|EEU73579.1| MutL [Enterococcus faecalis JH1]
 gi|306513099|gb|EFM81733.1| DNA mismatch repair protein [Enterococcus faecalis TX4248]
 gi|315034869|gb|EFT46801.1| DNA mismatch repair protein [Enterococcus faecalis TX0027]
 gi|315146538|gb|EFT90554.1| DNA mismatch repair protein [Enterococcus faecalis TX4244]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|315150784|gb|EFT94800.1| DNA mismatch repair protein [Enterococcus faecalis TX0012]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSTAAADSANHWESASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPPERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|229547981|ref|ZP_04436706.1| DNA mismatch repair protein [Enterococcus faecalis ATCC 29200]
 gi|257091401|ref|ZP_05585762.1| DNA mismatch repair protein mutL [Enterococcus faecalis CH188]
 gi|312905469|ref|ZP_07764583.1| DNA mismatch repair protein [Enterococcus faecalis TX0635]
 gi|229306857|gb|EEN72853.1| DNA mismatch repair protein [Enterococcus faecalis ATCC 29200]
 gi|257000213|gb|EEU86733.1| DNA mismatch repair protein mutL [Enterococcus faecalis CH188]
 gi|310631198|gb|EFQ14481.1| DNA mismatch repair protein [Enterococcus faecalis TX0635]
 gi|315161300|gb|EFU05317.1| DNA mismatch repair protein [Enterococcus faecalis TX0645]
 gi|315577077|gb|EFU89268.1| DNA mismatch repair protein [Enterococcus faecalis TX0630]
          Length = 710

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSATVDSENHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|294779166|ref|ZP_06744576.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|294453799|gb|EFG22191.1| DNA mismatch repair protein, C-terminal domain protein
           [Enterococcus faecalis PC1.1]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNTATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|257080442|ref|ZP_05574803.1| DNA mismatch repair protein [Enterococcus faecalis E1Sol]
 gi|256988472|gb|EEU75774.1| DNA mismatch repair protein [Enterococcus faecalis E1Sol]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAVDSENHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|315159532|gb|EFU03549.1| DNA mismatch repair protein [Enterococcus faecalis TX0312]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 134/435 (30%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   +   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGHGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAVDSENHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSATSQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|327536287|gb|AEA95121.1| DNA mismatch repair protein HexB [Enterococcus faecalis OG1RF]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P IID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIIIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|315172873|gb|EFU16890.1| DNA mismatch repair protein [Enterococcus faecalis TX1346]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 138/485 (28%), Positives = 229/485 (47%), Gaps = 8/485 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLP 356
           HP K  +R      +   I Q+IQ+ ++++ +  ++      KK +    +    +  L 
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPPEPKAEQMEIPLS 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               ++      L               D+   S   + V ++E     +    A     
Sbjct: 360 TEQPAVKQRPGSLSYNPATGRFYAEHAIDETPASSAPEAVNQTERAVDPMDDPFAPPVPE 419

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
                           AA     +E    +       ++    P+    L    A     
Sbjct: 420 STSVAEETSAYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLPSSEAADEVF 479

Query: 477 DEDLH 481
            E++ 
Sbjct: 480 QEEMK 484



 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQ---DNAPKTHLPKYATSLTNTQ--EKLFLQENRLSTN 379
           A      +  S    +  S+  Q   +    T +P    SL +++  +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQVIAEETKITEVPDSEPSLPSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|256761016|ref|ZP_05501596.1| DNA mismatch repair protein mutL [Enterococcus faecalis T3]
 gi|256962999|ref|ZP_05567170.1| MutL [Enterococcus faecalis HIP11704]
 gi|307273664|ref|ZP_07554892.1| DNA mismatch repair protein [Enterococcus faecalis TX0855]
 gi|256682267|gb|EEU21962.1| DNA mismatch repair protein mutL [Enterococcus faecalis T3]
 gi|256953495|gb|EEU70127.1| MutL [Enterococcus faecalis HIP11704]
 gi|306509677|gb|EFM78719.1| DNA mismatch repair protein [Enterococcus faecalis TX0855]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q    +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQIIDEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPVGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|229547408|ref|ZP_04436133.1| DNA mismatch repair protein [Enterococcus faecalis TX1322]
 gi|256854834|ref|ZP_05560198.1| DNA mismatch repair protein HexB [Enterococcus faecalis T8]
 gi|257417287|ref|ZP_05594281.1| MutL [Enterococcus faecalis AR01/DG]
 gi|229307440|gb|EEN73427.1| DNA mismatch repair protein [Enterococcus faecalis TX1322]
 gi|256710394|gb|EEU25438.1| DNA mismatch repair protein HexB [Enterococcus faecalis T8]
 gi|257159115|gb|EEU89075.1| MutL [Enterococcus faecalis ARO1/DG]
 gi|315028310|gb|EFT40242.1| DNA mismatch repair protein [Enterococcus faecalis TX4000]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQIIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|312902027|ref|ZP_07761289.1| DNA mismatch repair protein [Enterococcus faecalis TX0470]
 gi|311290963|gb|EFQ69519.1| DNA mismatch repair protein [Enterococcus faecalis TX0470]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q    +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQIIDEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  PA         ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPAWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|313157387|gb|EFR56810.1| DNA mismatch repair protein, C-terminal domain protein [Alistipes
           sp. HGB5]
          Length = 679

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 121/402 (30%), Positives = 200/402 (49%), Gaps = 8/402 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E + NQIAAGE++ RP+  +KE++EN++DA +  V+     GGK   QI D+G 
Sbjct: 4   KIRLLPEVVANQIAAGEVVNRPASVVKEMMENAIDAGARTVKVNFRDGGKDLIQIVDDGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  +  MA  RH TSKI+  DD   ++TFGFRGEAL SI AV+ + L +R   +  G 
Sbjct: 64  GMSPIDARMAFDRHATSKITSVDDIYALNTFGFRGEALASIAAVAQVELRTRQEGDEVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q  I+G + +   PV    G+   VR+LF+ +PAR  FL         I    +R+A+  
Sbjct: 124 QTEINGGQFAGQTPVMCPVGSQFFVRNLFYNVPARRRFLDKSTTSAAQIKSEFQRVALCN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F      +  Y +       +   RI  V+G     N +E+   ++   ++GY G 
Sbjct: 184 PQIAFELYANDAPVYTL----GAASLAGRIVDVVGRHIKQNLLEVEADTSIARIEGYIGR 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +    + Y+F+NGR  +  ++ S I  AY + IP    P   L L IDP ++DVNV
Sbjct: 240 PAAAKRRNGEQYLFVNGRYFKSSYLTSAIMKAYEKLIPESSSPSYFLYLTIDPSRIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ ++F +   +   +  ++++ + K G        ++ I           +    A
Sbjct: 300 HPQKTEVKFADEEAVWQIVNAAVRETLAKTGAVPLMDFDREGIVEIPVLTKGAVYSEPRA 359

Query: 360 TSLT--NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
            S +  N   + ++  +    N      D  +S++   + ++
Sbjct: 360 MSNSEYNPFREEYIDPSAPDPNVDFAGFDVPFSDNGQTLSDN 401



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
            +   Y+ +      V+VD   A ER+++E   +   S    SQ LL PE + L + E A
Sbjct: 500 PLGGGYVAALLGGRFVVVDVRRARERILYEDYLKMLGSGSSVSQQLLFPERLVLPDSEYA 559

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
           L+ E+  +   LG   +  G  A+ ++  PA +   ++ QLL +++      ST  +L D
Sbjct: 560 LLEENAVEFASLGFDLDFQGDCAVEVKGTPADMPADSVDQLLYELLQAF---STPVSLAD 616

Query: 532 -RIENILATMACYGSIRSGRKM-QSIE 556
            R E I A MA  G+ +   ++    E
Sbjct: 617 VRREKIAAVMA-RGAAKQTARLMSRDE 642


>gi|315171155|gb|EFU15172.1| DNA mismatch repair protein [Enterococcus faecalis TX1342]
          Length = 710

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 223/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  + +    F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMTLIEQAIQEVLSQEQLIPNAADNLR----FKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQIIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|254518943|ref|ZP_05130999.1| DNA mismatch repair protein mutL [Clostridium sp. 7_2_43FAA]
 gi|226912692|gb|EEH97893.1| DNA mismatch repair protein mutL [Clostridium sp. 7_2_43FAA]
          Length = 684

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 136/423 (32%), Positives = 214/423 (50%), Gaps = 16/423 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E   N+IAAGE++ERPS  +KEL+ENS+DAE+  +   I  GG S  +I D+G 
Sbjct: 3   RINLLDEHTSNKIAAGEVVERPSSVVKELVENSIDAEAKNITIEIEEGGISLIRIIDDGN 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++I  A   H TSKI   +D  +I T GFRGEAL SI ++S + L S+  + + G+
Sbjct: 63  GIHKDDIKKAFMPHATSKIQNVEDIYSIMTLGFRGEALASIASISKVLLRSKINEVDFGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I+I G +I S      N GTI+EVRDLF+ +PAR  FLKS   E  LI+D++ R+A++ 
Sbjct: 123 EISIEGGEILSESETGTNKGTIIEVRDLFYNVPARRKFLKSTSREGALISDIVSRIALSN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VS  F        K+      GN  + I  V G+    N +      + I L GY G 
Sbjct: 183 PDVSIKFYNNGK---KVLHTYGTGNLKDVIRTVYGKTISENLIYFESAEDAIHLYGYIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               RG+ N   +F+NGR +++K I++ I  A+     + ++P  VL LE+ P  VDVN+
Sbjct: 240 EEIARGSRNNQSIFVNGRYIKNKTIVAAIENAFKSFATVNKFPFFVLFLEVYPEFVDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ I+F+    I   +  ++ KA   +  +             H+D  P   + + +
Sbjct: 300 HPTKAEIKFKEDRGIFKKVFDAVHKAFKSEVFN---DFYIPEEEKEHKDEVPTEVVEEIS 356

Query: 360 T--------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
                    S +N     + ++N     +   +  P  S ++   EE    + +      
Sbjct: 357 FNINLNDTYSNSNNLPLSYYEDNSNKNKENEINTMPGVSYEDLKREEELYNNLKNLKELG 416

Query: 412 QIH 414
           ++ 
Sbjct: 417 KLD 419



 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 1/217 (0%)

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            ++ + +++   +++N    E+    +       Q ++ YI+++  + L ++DQHAAHE+
Sbjct: 467 KSNEVNNENVVSNKENLNNIENRNAKFPNLRIIGQFNKTYILAEYDEVLYMIDQHAAHEK 526

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           ++FEK  +      I  Q LL P +IDL   +     E+ +     G   E FG N IAI
Sbjct: 527 ILFEKYLKSIEEGDIVVQQLLVPTLIDLTTDDFCYYEENSKVFTMAGFSIENFGGNTIAI 586

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           +E+P  L K +   L  +I+D I    +  T + +   I AT+AC  ++++   +  +EM
Sbjct: 587 KEVPYFLGKLDPRNLFINILDNIKSLGSGKTTEVKYNRI-ATLACKAAVKANDYLNQMEM 645

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +L+ ++    +   C HGRP  IK    +++K F R
Sbjct: 646 EKLINDLRYIDDPFHCPHGRPVIIKFTNYELDKKFRR 682


>gi|303241529|ref|ZP_07328030.1| DNA mismatch repair protein MutL [Acetivibrio cellulolyticus CD2]
 gi|302590947|gb|EFL60694.1| DNA mismatch repair protein MutL [Acetivibrio cellulolyticus CD2]
          Length = 732

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/354 (35%), Positives = 186/354 (52%), Gaps = 5/354 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E   NQIAAGE++ERP+  +KEL+ENS+DA SS +   I  GG S  ++ DNG 
Sbjct: 10  KIVILDENTSNQIAAGEVVERPASVVKELVENSIDAGSSNISIEINNGGVSLIKVVDNGN 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A +RH TSKI   DD  +I T GFRGEAL SI +VS + L SR      G 
Sbjct: 70  GIDEDDVEIAFERHSTSKIRRADDLESISTLGFRGEALASIASVSLVELTSRIKDRQYGK 129

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I I G  I  VR      GT   VRDLF+  PAR  FLK +  E   I+D++ R+A+  
Sbjct: 130 YIKIQGGIIKEVRQTGCPVGTTFIVRDLFYNTPARFKFLKKDTTEAGYISDMVNRIALGN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            ++S      ++    +     N +    I  + G++     +E+  +  +I + GY G 
Sbjct: 190 QQISMKLINNRN---SVIHTPGNNDLLSAIFSIYGKETAKEVLEVKYQDEKIEIYGYVGK 246

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N   ++INGR V++K I S I  AY   +   ++  VVL + I+P  VDVNV
Sbjct: 247 PEIARANRNYQSIYINGRYVKNKTISSAIDEAYKTYLLKNKFAFVVLHIRINPLFVDVNV 306

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           HP K  +RF +   I   +  ++  A+  K +  +  + +   + F  +    +
Sbjct: 307 HPTKMEVRFSDEPAIFKAVYHAVNNALLSKSLIRNVEMKENPKNFFKFEENNFS 360



 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           ++E ++ + +  P +D      N      EA   Q      Q    YI+ Q  D L+++D
Sbjct: 507 IEEPKIESQEEKPDEDEKREPINADDRAKEANQLQAAKIIGQAFSTYILLQDGDNLILID 566

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHER++FE +++ +   +  +Q LL+  +I+L   E  +I E+ E L+RLG   E F
Sbjct: 567 QHAAHERIMFEALKKKYKRNESLAQYLLSSVVIELTNQEVKIIEENREKLNRLGFAFENF 626

Query: 491 GPNAIAIREIPAILSK-KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           G N+I +R IP  L+   ++ +   DI+D ++       +    E  L  +AC  ++++ 
Sbjct: 627 GNNSIILRSIPVALADNASVKETFLDILDFLMSDKRKENI-LIEEEALYRVACKSAVKAN 685

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +++  IE+ ++++++    N   C HGRPT IK+   + EK+F R
Sbjct: 686 KRLDDIEIKKIIKDLSNIENPYTCPHGRPTLIKITKYEFEKMFKR 730


>gi|299530786|ref|ZP_07044201.1| DNA mismatch repair protein MutL [Comamonas testosteroni S44]
 gi|298721302|gb|EFI62244.1| DNA mismatch repair protein MutL [Comamonas testosteroni S44]
          Length = 745

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 206/385 (53%), Gaps = 7/385 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LD+ ++++   +  GG     + D+G 
Sbjct: 28  PIRDLPDELISQIAAGEVVERPASVVRELVDNALDSGAAQITVRLLAGGVRLIAVEDDGC 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKISD  D   + T GFRGEAL +I +VS  ++ SRP   ++  
Sbjct: 88  GIPRDELPVALRRHATSKISDLHDLETVATMGFRGEALAAIASVSETSIFSRPAGQDSAY 147

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A N GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 148 LLDARSGEL---RPAARNQGTTVEVKELFFSTPARRKFLKTDATELAHCIESVRRHALAR 204

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V F          +     +  +     R++ V+ + F++N+V ++  +  + + G  
Sbjct: 205 PDVGFAIWHEGKLVEQWRAAGSTPDEALSRRLADVLNDKFVDNSVAVDHWAGPVHVTGRA 264

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           GIP   R   +Q + ++NGR V+DK +    R AY + +   + PV  L +EIDP +VDV
Sbjct: 265 GIPDAARSRPDQQFCYVNGRFVRDKVLTHAARAAYEDVLHGNKQPVYALYIEIDPARVDV 324

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +RFR+   +   +  +I+ A+     +     + +  +         T  P 
Sbjct: 325 NVHPTKIEVRFRDSREVHQAVRHAIENALATPRAAAVVEAAAQEAARQPGLIDDSTATPV 384

Query: 358 YATSLTNTQEKLFLQENRLSTNDLL 382
            A + T         + R+S  +  
Sbjct: 385 AAKAATKPAAAPAWPQTRMSFGEPA 409



 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/195 (39%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN----STKITSQTLLT 459
           + LG A AQ+H  YI+++ + G+VIVD HAAHER+++E+++   N      +I SQ LL 
Sbjct: 549 WPLGRAVAQLHGVYILAENSQGMVIVDMHAAHERIVYEQLKNAVNTENGDQQIPSQPLLI 608

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P        E A    H E L  LG++   F P  +A+R +PA L++ +  +L R ++ E
Sbjct: 609 PATFAATPEEVATAEAHAETLLTLGMEVSPFSPKTLAVRAVPATLAQGDAVELARSVLAE 668

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           +     +  +Q     ILATMAC+G++R+ RK+   EMN LLR+ME    S QCNHGRPT
Sbjct: 669 LAQHDASTVVQRARNEILATMACHGAVRANRKLTLDEMNALLRQMEVTERSDQCNHGRPT 728

Query: 580 FIKLKLSDIEKLFGR 594
           + +L + +++ LF R
Sbjct: 729 WRQLSMKELDALFLR 743


>gi|257083164|ref|ZP_05577525.1| DNA mismatch repair protein [Enterococcus faecalis Fly1]
 gi|256991194|gb|EEU78496.1| DNA mismatch repair protein [Enterococcus faecalis Fly1]
          Length = 710

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 132/416 (31%), Positives = 217/416 (52%), Gaps = 8/416 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL---SKKMISSFHQDNAPKTHLP 356
           HP K  +R      +   I Q+IQ+ ++++ +  ++      KK + S  +    +  L 
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNLRFKKKLPSEPKAEQMEIPLS 359

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
               ++      L              +D+   S   + V ++E     +    A 
Sbjct: 360 TEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415



 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYESSSAAVDSANQWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|188586123|ref|YP_001917668.1| DNA mismatch repair protein MutL [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350810|gb|ACB85080.1| DNA mismatch repair protein MutL [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 680

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 215/469 (45%), Gaps = 9/469 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L  +I  +IAAGE++ERP+  +KELIENS+DA S  ++  ++  GK   ++ DNG 
Sbjct: 3   RINILRHEISEKIAAGEVVERPASVVKELIENSIDAGSDNIQIFLSKAGKELIRVIDNGL 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +A  RH TSK++   D   I+T GFRGEAL SI AVS + + +R   +  G 
Sbjct: 63  GIHPEDVELAFSRHATSKVNSIKDLDKINTLGFRGEALASIAAVSKIEMNTRRHDSKEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +   K+         PGT + V+DLF+  PARL FL  E  E  LI D+I + A+A 
Sbjct: 123 RVFLEEGKVQQRGSAGCPPGTDIAVKDLFYNTPARLKFLSKESTEIALIHDIINKFALAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F          K+   S   +  E I+ + G       + +    + IT+ GY   
Sbjct: 183 PNIRFRALNGNK---KLLQTSGRNDMLEVIANIYGYQTAKKLLPIKYSQDGITITGYIAK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N +    F+N R V+  F+   +   Y   +P  RYP  +L L++    +DVNV
Sbjct: 240 PELTRSNRSYQTFFVNDRYVKSTFLSERLEKGYHTLLPKHRYPFSILKLQVPDEILDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK ++RF N   I N + +++ + + ++ +   +        +  +    +       
Sbjct: 300 HPAKIHVRFINEKQIGNMLTKAVTEKLKQEQLIFQAPKVNNTKKNQTKPEGSQLRFRGVN 359

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +   + EK   +      N++   D+ +    N+ ++E +              +N+I 
Sbjct: 360 KNNAPSFEKTSSKFKSQLNNNVY--DNISSKTSNNYLKEKQEYDIPRINNKVDHTKNHIE 417

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
           +QT + +         E    EK     +     S   +      L + 
Sbjct: 418 NQTENHIET--HQKTQEIGDQEKTSDSVHYGSNPSSKPIGDSSGKLSDD 464



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 131/295 (44%), Gaps = 4/295 (1%)

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           +K+   +       + I +   K  + K    +   +        Q+   +         
Sbjct: 387 SKTSNNYLKEKQEYD-IPRINNKVDHTKNHIENQTENHIETHQKTQEIGDQEKTSDSVHY 445

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA--CAQIHQNYII 419
            +N   K     +   ++D        + +  D  + +E   + L       QI   Y I
Sbjct: 446 GSNPSSKPIGDSSGKLSDDSSGESYSDHIDTIDLADNNENFLHDLLEYRVVGQIFTTYWI 505

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +++D + ++DQHAAHER+ ++ +   + S+++ SQ ++    ++L       + ++ + 
Sbjct: 506 LESSDEIYLIDQHAAHERINYQLLMDRYRSSQLKSQQVIP-YTLELDSAGITALEDNLDK 564

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L + G++ E FG N + +R +P  +        + D+ID++I           +E +L T
Sbjct: 565 LRQCGLEFEFFGQNTLLVRGVPFAIKDIFDQDAIYDLIDQLIKHPDNDLDITSLEEMLIT 624

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  SI++  K+ + E+  LL+ + + P    C HGRPT I L  +D+EKLF R
Sbjct: 625 IACKKSIKANEKIGAKELKSLLKSLVETPTPFTCPHGRPTIINLTRTDVEKLFYR 679


>gi|255974226|ref|ZP_05424812.1| DNA mismatch repair protein mutL [Enterococcus faecalis T2]
 gi|307284812|ref|ZP_07564968.1| DNA mismatch repair protein [Enterococcus faecalis TX0860]
 gi|255967098|gb|EET97720.1| DNA mismatch repair protein mutL [Enterococcus faecalis T2]
 gi|306503071|gb|EFM72328.1| DNA mismatch repair protein [Enterococcus faecalis TX0860]
          Length = 710

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 222/435 (51%), Gaps = 9/435 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++LSE++ NQIAAGE++ERP+  +KEL+EN+LDA S++++  I   G    QI DNG 
Sbjct: 3   KIQELSEQLANQIAAGEVVERPASVVKELVENALDAGSTQIDIFIEEAGLKTIQIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A +RH TSKI   DD   I + GFRGEALPSI +VS + + +   +   G+
Sbjct: 63  GIAKEDVLNAFKRHATSKIHTRDDLFRIRSLGFRGEALPSIASVSEMIVETATAEEEEGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+   RP A+  GT + V +LF+  PARL ++K+ Q E   I D++ R+A+++
Sbjct: 123 YVILKGGKVEENRPAALRKGTKMTVSNLFYNTPARLKYVKTIQTELANIGDIVNRLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           PKV+F          KM   + NG+  + I+ + G       +++  K  + TL GY  +
Sbjct: 183 PKVAFRLVHDGH---KMMSTTGNGDLKQTIAGIYGISTAKKMLKIEGKDLDFTLTGYVSL 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N     INGR +++  +   I   Y   + +GR+P+ VL +E+DP  VDVNV
Sbjct: 240 PEVTRASRNYLSTIINGRYIKNFALNKAIVAGYGSKLMVGRFPIAVLEIEMDPLLVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I Q+IQ+ ++++ +  ++  +      F +   P+    +  
Sbjct: 300 HPTKQEVRLSKEKDLMALIEQAIQEVLSQEQLIPNAADNL----HFKKKLPPEPKAEQME 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
             L+  Q  +  +   LS N         ++ D  P   +     Q   A   +   +  
Sbjct: 356 IPLSTEQPAVKQRPGSLSYNPATGRFYAEHATDETPASSAPEAVNQTERAVDPMDDPFAP 415

Query: 420 SQTTDGLVIVDQHAA 434
                  V  +  A 
Sbjct: 416 PVPESTSVAEETSAY 430



 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/278 (25%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS-----LTNTQEKLFLQENRLSTN 379
           A      +  S    +  S+  Q  A +T + + + S      +   +++F +E +L   
Sbjct: 429 AYETSSAAADSANHWETASNEQQVIAEETKITEVSDSEPSLRSSEAADEVFQEEMKLHPE 488

Query: 380 ---DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
              +   S        N   EE     +       Q+H  Y+ +Q+ DGL I+DQHAA E
Sbjct: 489 FDANSAASQRELKQALNKLEEERPTERFPELEYFGQMHGTYLFAQSKDGLFIIDQHAAQE 548

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+ +E  R+         Q LL P +ID    +   I E  E L  +GI  E FG N+  
Sbjct: 549 RIKYEYFREKIGEVSDDLQELLVPIVIDYPNSDALKIKEQKETLAEVGIHLEDFGQNSFI 608

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P          ++R++ID ++ +  + +++   E     M+C  SI++   +   +
Sbjct: 609 VRAHPTWYPAGEEESIVREMIDMLLTTG-SVSVKKFREATAIMMSCKRSIKANHYLNEQQ 667

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              LL+++    N   C HGRP  I    SD+E++F R
Sbjct: 668 ARVLLKDLALCENPFNCPHGRPVLIHFTNSDMERMFKR 705


>gi|300811160|ref|ZP_07091672.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497864|gb|EFK32874.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 656

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 145/663 (21%), Positives = 262/663 (39%), Gaps = 83/663 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++SR+   +   G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI D  D  NI T GFRGEAL SI AV+H+ +++      T  
Sbjct: 63  GIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILTSTDGQ-TAT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + A +G             GT + V D+F+  PARL +LKS + E   I D++ R+A+ +
Sbjct: 122 RAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S T ++       +     NGN  + ++ + G       + +  +  + TL G    
Sbjct: 182 PEISLTLASDGK---VLLRTPGNGNLKQDVANIYGRKVAEKMLTVENEDPDFTLYGLVSE 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + N   + +NGR +++  + S +   Y   +  G+YP+ VL +E DP  VDVNV
Sbjct: 239 ANLTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLG-GKYPIAVLAIEADPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  ++ +A+  +  ++        ++ F              
Sbjct: 298 HPTKEEVRLSKEKELSRLITSAVTEALMDEDEASPLF----QLTPFKDKTQLDQLEFNLK 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            ++ +T+     Q       +     D T  ++ +  E  E    +      +  +    
Sbjct: 354 PNVVDTRRPDDFQLEVSQVAEPEGKTDITNKKETESKETKETAEKKENKQEEKEEKTSAP 413

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                  V  D      +   + ++     T +            +      L+ +H   
Sbjct: 414 EYVDLNQVREDDQYVLTKSWGQHVK---EQTALPPFAGGEEAASPVTSKADQLLRQHLPA 470

Query: 480 LHRL----GIKAERFGPNAIAIREI---------------------------PAIL---- 504
           L  L    G      G +   + ++                           P +     
Sbjct: 471 LRLLGQMGGYLLAEHGGDLYLLDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSV 530

Query: 505 ----SKKNIPQLLRDIIDEIIDSSTTYTL----------------QDRIENILATM---- 540
                 K+   LLR +  E+ D      L                ++ ++ +L++     
Sbjct: 531 YDYQKLKDQLPLLRQLGLEMEDFGQNTLLMHSYPTWLKGEVTVQVRELLDQLLSSRENDG 590

Query: 541 -------ACYGS---IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                  A   +   +     +   E   LL  ++   +  +   G+   ++L  +D+ K
Sbjct: 591 KSLLKLVAAKAAESNVSRRVNLTGAEAADLLLRLQTASDPYRDASGQVAVVRLSQNDLSK 650

Query: 591 LFG 593
           LF 
Sbjct: 651 LFK 653


>gi|325126231|gb|ADY85561.1| DNA mismatch repair protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 653

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 144/663 (21%), Positives = 262/663 (39%), Gaps = 86/663 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++SR+   +   G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI D  D  NI T GFRGEAL SI AV+H+ +++      T  
Sbjct: 63  GIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILTSTGGQ-TAT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + A +G             GT + V D+F+  PARL +LKS + E   I D++ R+A+ +
Sbjct: 122 RAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S T ++       +     NGN  + ++ + G       + +  +  + TL G    
Sbjct: 182 PEISLTLASDGK---VLLRTPGNGNLKQDVANIYGRKVAEKMLTVENEDPDFTLYGLVSE 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + N   + +NGR +++  + S +   Y   +  G+YP+ VL +E DP  VDVNV
Sbjct: 239 ANLTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLG-GKYPIAVLAIEADPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  ++ +A+  +  ++              D       P   
Sbjct: 298 HPTKEEVRLSKEKELSRLITSAVTEALMDEDEASPLFQLTPFKDKTQLDQLEFNLKPNVV 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              T   +   L+ ++++  +           +     E +    +         +   +
Sbjct: 358 --DTRRPDDFQLEVSQVAEPEGKTDITNKKETETKETAEKKENKQEEKEEKTSAPEYVDL 415

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  +    V   +  + +  +     F   +  +          +      L+ +H   
Sbjct: 416 NQVREDDQYVLTKSWDQHVKEQTALPPFAGGEEAASP--------VTSKADQLLRQHLPA 467

Query: 480 LHRL----GIKAERFGPNAIAIREI---------------------------PAIL---- 504
           L  L    G      G +   I ++                           P +     
Sbjct: 468 LRLLGQMGGYLLAEHGGDLYLIDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSV 527

Query: 505 ----SKKNIPQLLRDIIDEIIDSSTTYTL----------------QDRIENILATM---- 540
                 K+   LLR +  E+ D      L                ++ ++ +L++     
Sbjct: 528 YDYQKLKDQLPLLRQLGLEMEDFGQNTLLMHSYPTWLKGEVTVQVRELLDQLLSSRKNDG 587

Query: 541 -------ACYGS---IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                  A   +   +     +   E   LL  ++   +  +   G+   ++L  +D+ K
Sbjct: 588 KSLLKLVAAKAAESNVSRRVNLTGAEAADLLLRLQTASDPYRDASGQVAVVRLSQNDLSK 647

Query: 591 LFG 593
           LF 
Sbjct: 648 LFK 650


>gi|317402324|gb|EFV82900.1| hypothetical protein HMPREF0005_00126 [Achromobacter xylosoxidans
           C54]
          Length = 410

 Score =  333 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 12/363 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+  +KE++EN++DA +  +E  + GGG     +TD+G 
Sbjct: 49  SILALPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGG 108

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A+ RH TSKI +  +  ++ + GFRGEAL SI +V+ ++++SR        
Sbjct: 109 GIPPDELPLALARHATSKIRNLHELESVASMGFRGEALASIASVAQVSIISRTRDGEHAW 168

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           QI     ++    P +  PGT V+VR LF  +PAR  FL+SE  E     D + R+A+A+
Sbjct: 169 QIQAGSMQV---TPASGPPGTTVDVRQLFDAVPARRKFLRSEATEFGHCVDAMERIALAH 225

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+++F        + +           +RI  V+G +F  + + L+     ++L G    
Sbjct: 226 PQIAFRLFHHDRAQRQWLPAEPP----QRIRDVLGAEFAEHGLLLSHSVGTVSLAGMITR 281

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ Y+++NGR V+D+ +   +R AYA+ +   R P  VL L+IDP  VDVNV
Sbjct: 282 PTAARARADRQYLYVNGRYVRDRTVSHALRAAYADVLHGDRQPAYVLFLDIDPAAVDVNV 341

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK  +RFR+   +  F+  ++ + + + G S++        ++   D+  +T  P   
Sbjct: 342 HPAKHEVRFRDSGAVHRFVNHAVSQTLAQTGGSSA---VAPAAATRDDDDGFETVAPSAP 398

Query: 360 TSL 362
           T+ 
Sbjct: 399 TAP 401


>gi|160900563|ref|YP_001566145.1| DNA mismatch repair protein MutL [Delftia acidovorans SPH-1]
 gi|160366147|gb|ABX37760.1| DNA mismatch repair protein MutL [Delftia acidovorans SPH-1]
          Length = 674

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 116/327 (35%), Positives = 188/327 (57%), Gaps = 7/327 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LDA + ++   +  GG     + D+G 
Sbjct: 15  PIRDLPDELISQIAAGEVVERPASVVRELVDNALDAGARQINVRLLAGGVRLISVEDDGG 74

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+P+A++RH TSKI+D  D   + T GFRGEAL +I +VS  +++SRP   ++  
Sbjct: 75  GIPRDELPVALRRHATSKITDLHDLETVATMGFRGEALAAICSVSEASILSRPAGQDSAY 134

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A N GT VEV++LFF+ PAR  FLKS+  E     + +RR A+A 
Sbjct: 135 LLDARSGEL---RPAARNQGTTVEVKELFFSTPARRKFLKSDATELAHCIESVRRHALAR 191

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           P V F          +     +  +     R+  V+G+ F+ N+V +   S  + + G  
Sbjct: 192 PDVGFAIWHEGKLVEQWRAAGSMSDEALARRLGDVLGDAFVQNSVTVEHWSGAVHVTGRA 251

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           GIP   R   +  + ++NGR V+DK +    R+AY + +   + PV  L +EIDP +VDV
Sbjct: 252 GIPDAARSRPDHQFCYVNGRFVRDKVLTHASRSAYEDVLHGHKQPVYALYVEIDPARVDV 311

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQK 324
           NVHP K  +RFR+   +   +  +I+ 
Sbjct: 312 NVHPTKIEVRFRDSREVHQAVRHAIEN 338



 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 1/293 (0%)

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           ++ + F +          +   A  ++       L  +               P      
Sbjct: 380 QARMSFGDEQGGHKVSNMAGLWAPMREAAPAPVALPAQTAMQTAGAAEVAVDTPGVQWPA 439

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            +                  PS         D    +E T + LG A AQIH  YI+++ 
Sbjct: 440 GDVPASYAPAAQPRPVTVSEPSPANFTPPAADTPAAAEETIWPLGRAVAQIHGVYILAEN 499

Query: 423 TDGLVIVDQHAAHERLIFEKMRQD-FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             G+V+VD HAAHER+++E+++     + +I SQ LL P        E A    H + L 
Sbjct: 500 AQGMVVVDMHAAHERIVYEQLKNAVNAAEQIPSQPLLIPATFAATPEEVATAEAHGDTLQ 559

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            LG++   F P  +A+R +PA L++ +  +L R ++ E+     +  +Q     ILATMA
Sbjct: 560 ALGMEVSPFSPKTLAVRAVPATLAQGDAVELARSVLAELAQHDASTVVQRARNEILATMA 619

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C+G++R+ R++   EMN LLR+ME    S QCNHGRPT+ ++ + +++ LF R
Sbjct: 620 CHGAVRANRRLTLDEMNALLRQMEVTERSDQCNHGRPTWRQMSMKELDALFLR 672


>gi|219682467|ref|YP_002468851.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254766163|sp|B8D891|MUTL_BUCAT RecName: Full=DNA mismatch repair protein mutL
 gi|219622200|gb|ACL30356.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 584

 Score =  333 bits (854), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 137/524 (26%), Positives = 255/524 (48%), Gaps = 12/524 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + +QI+AGEIIERP+  +KE+IENS+DA S  +  ++   G     + D+G
Sbjct: 1   MPIRILPSDLSSQISAGEIIERPASVVKEIIENSIDAGSKNINIIVENSGFQSIILKDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +AV  H TSKI+   D   + TFGFRGEAL SI AVS LTL+S    N+  
Sbjct: 61  CGIDKKDLLLAVCHHATSKINSLSDLDKLTTFGFRGEALASIRAVSRLTLISCTRFNDVA 120

Query: 119 AQIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           A+I +     K   ++P+A   GT + V +LF+ IP RL FLK++++E + I +V++++A
Sbjct: 121 AKIYLEGFCSKNIILQPIAHPEGTTIIVDNLFYNIPVRLKFLKNKKLEFSKICEVVKKIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +++  ++F+         + N  +   N   R+  +      +  +E+ EK   + L G+
Sbjct: 181 LSHFYINFSLKHNNKLITQYNSINNRKNKINRLKDIFDTLDTSEFLEIKEKKYRMVLFGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P   +   N  Y ++N R + +   ++ +R AY++ I   +    VL L I+   +D
Sbjct: 241 ISHPYNFKKIKNIQYCYVNNRYLYNNIFVNAVRAAYSK-IEQKKNISFVLYLTIESFNID 299

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +N+HP K+ I+F NP ++  FI +++   + K         S K  +  +++   + +  
Sbjct: 300 INIHPTKNEIKFHNPDVVYTFIYEAVFSYLKKIKEKYYFNFSCKKQTQLNKEK--EFYFY 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               +       +F ++ ++  N         +   + P+E+ E+    +G     IH+ 
Sbjct: 358 DSDPTFLTLISSIFFKKKQIFKNIKNKIKHNNFISKSTPLEKYES---SIGRLLIIIHKY 414

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y +    +  +++    A   +  +K++ +     I  +  L+   I+L   E  ++   
Sbjct: 415 YGLIYHDNNFLLLSFPVAKGIVRKQKLKNNIQKENI-IEYFLSNIKINLTSQEYLILFNQ 473

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            E L + G     F    + +  IPA L K N   ++ +    +
Sbjct: 474 KEILSKFGFHL-IFKKKYVILSSIPAFLKKCNFHIIISNFFAFL 516


>gi|154497032|ref|ZP_02035728.1| hypothetical protein BACCAP_01325 [Bacteroides capillosus ATCC
           29799]
 gi|150273431|gb|EDN00559.1| hypothetical protein BACCAP_01325 [Bacteroides capillosus ATCC
           29799]
          Length = 684

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 111/344 (32%), Positives = 183/344 (53%), Gaps = 6/344 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I++L   + + IAAGE++ERP+  +KEL+EN++DA +  V   I  GG S  ++TDN
Sbjct: 7   MPHIQQLDPHVADLIAAGEVVERPASVVKELVENAIDAGAETVTVEIQRGGMSLIRVTDN 66

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ ++E   A  RH TSKI    D   I T GFRGEAL +I AVS + L++R  + + 
Sbjct: 67  GCGIAADEAETAFLRHATSKIRTEHDLEAIGTLGFRGEALAAIAAVSRVDLLTRTAEEDL 126

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           GA +++ G ++ S        GT + VRDLFF  PARL F+K +  E   +  +++R+A+
Sbjct: 127 GAALSLEGGEVVSREEAGCPVGTTMVVRDLFFNTPARLKFMKKDAAEGAAVFAMVQRLAL 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P+VS  F        +      +G     +  V+G D     +E+     ++T+ G+T
Sbjct: 187 AHPEVSMKFLRDGK---QELLTPGDGQMKSAVYSVLGRDLALGLIEVKGSGEDMTVTGFT 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P   R      + F+NGR V+ + +++ +  AY     +G++P  VL L      VDV
Sbjct: 244 SLPACCRPTRGYQHFFVNGRYVKSRTMMAALEEAYQNQKMVGKFPACVLHLTCRLSGVDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           NVHP K  ++F N   + + +  ++  A+        + + +  
Sbjct: 304 NVHPTKQEVKFGNERQVFSAVYYAVLSALEGDKSHVQAQVGRPA 347



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 110/260 (42%), Gaps = 7/260 (2%)

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTN-TQEKLFLQENR--LSTNDLLPSDDPTYSEDND 394
                     +   +   P    +     +EK+ L E         + P  + +  E   
Sbjct: 428 PMPEQPVIRPEKPAEIVTPAPEKAPAPIPEEKMILPEPVELPEEKPVPPVQEVSEPEVQP 487

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                +           ++   YII +  D ++++D+HAAHER+ F+K++       +  
Sbjct: 488 EPVPQQPQEEIPWRVAGEVLNTYIIVEQGDKVLLIDKHAAHERMNFDKLKAQGYQPMVQ- 546

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
             LLTP +      E A+++++   L + G  AE FG  AI +R  P  +  +++P  L 
Sbjct: 547 -NLLTPAVFTPPAEEGAVLLQNLPLLSQFGFDAEDFGGGAIIVRAAPGDVDAEDVPATLE 605

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +I  +++ +          + ++ TMAC  +I+ G+K    E+ ++   + +      C 
Sbjct: 606 EIAAKLLTTGRANP-DAARDELMHTMACKAAIKGGQKNGPQELEKVAGAVMRGE-VKYCP 663

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP  I+L    +EK F R
Sbjct: 664 HGRPVAIELTRGQLEKQFKR 683


>gi|116514519|ref|YP_813425.1| DNA mismatch repair protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122274749|sp|Q048Y5|MUTL_LACDB RecName: Full=DNA mismatch repair protein mutL
 gi|116093834|gb|ABJ58987.1| DNA mismatch repair protein MutL [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 653

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 144/663 (21%), Positives = 262/663 (39%), Gaps = 86/663 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++SR+   +   G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI D  D  NI T GFRGEAL SI AV+H+ +++      T  
Sbjct: 63  GIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILTSTGGQ-TAT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + A +G             GT + V D+F+  PARL +LKS + E   I D++ R+A+ +
Sbjct: 122 RAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S T ++       +     NGN  + ++ + G       + +  +  + TL G    
Sbjct: 182 PEISLTLASDGK---VLLRTPGNGNLKQDVANIYGRKVAEKMLTVENEDPDFTLYGLVSE 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + N   + +NGR +++  + S +   Y   +  G+YP+ VL +E DP  VDVNV
Sbjct: 239 ANLTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLG-GKYPIAVLAIEADPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  ++ +A+  +  ++              D       P   
Sbjct: 298 HPTKEEVRLSKEKELSRLITSAVTEALMDEDEASPLFQLTPFKDKTQLDQLEFNLKPNVV 357

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
              T   +   L+ ++++  +           +     E +    +         +   +
Sbjct: 358 --DTRRPDDFQLEVSQVAEPEGKTDITNKKGTETKEKAEKKENKQEEKEEKTSAPEYVDL 415

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  +    V   +  + +  +     F   +  +          +      L+ +H   
Sbjct: 416 NQVREDDQYVLTKSWDQHVKEQTALPPFAGGEEAASP--------VTSKADQLLRQHLPA 467

Query: 480 LHRL----GIKAERFGPNAIAIREI---------------------------PAIL---- 504
           L  L    G      G +   I ++                           P +     
Sbjct: 468 LRLLGQMEGYLLAEHGGDLYLIDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSV 527

Query: 505 ----SKKNIPQLLRDIIDEIIDSSTTYTL----------------QDRIENILATM---- 540
                 K+   LLR +  E+ D      L                ++ ++ +L++     
Sbjct: 528 YDYQKLKDQLPLLRQLGLEMEDFGQNTLLMHSYPTWLKGEVTVQVRELLDQLLSSRENDG 587

Query: 541 -------ACYGS---IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                  A   +   +     +   E   LL  ++   +  +   G+   ++L  +D+ K
Sbjct: 588 KSLLKLVAAKAAESNVSRRVNLTGAEAADLLLRLQTASDPYRDASGQVAVVRLSQNDLSK 647

Query: 591 LFG 593
           LF 
Sbjct: 648 LFK 650


>gi|149183968|ref|ZP_01862344.1| DNA mismatch repair protein [Bacillus sp. SG-1]
 gi|148848324|gb|EDL62598.1| DNA mismatch repair protein [Bacillus sp. SG-1]
          Length = 529

 Score =  333 bits (853), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 135/532 (25%), Positives = 239/532 (44%), Gaps = 44/532 (8%)

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +VSHL + +       G +I + G  + +    +   GT + V  LFF  PARL ++K+ 
Sbjct: 1   SVSHLEMNTSTGDGP-GVKIKLQGGSVVTQEKSSSRKGTDITVSSLFFNTPARLKYMKTI 59

Query: 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
             E   ITDV  R+A+++P+VS            +   + NG+  + ++ + G +     
Sbjct: 60  HTELGNITDVANRIALSHPEVSIKLIHNGK---TLLHTNGNGDVRQVLAAIYGTNIARKM 116

Query: 222 VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
           V +   S + T++GY  +P   R + N     INGR +++  +   I   Y   +P+GRY
Sbjct: 117 VRIEASSLDFTVKGYISLPEITRASRNYISTMINGRFIKNYGLAKAIGEGYHTLLPIGRY 176

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           P+V+L +E+DP  VDVNVHP+K  +R      +   +  +I+ A   K +  S     K 
Sbjct: 177 PIVLLSIEMDPLLVDVNVHPSKMEVRISKEPELFELVSGAIKDAFKTKELIPSGYKEPKP 236

Query: 342 ISS------------FHQDNAPKTHLPKYATSLTNTQEKLFLQE---------------- 373
           +                 + AP      Y    T  QE+ +  E                
Sbjct: 237 MKPKSEQTTLTLDHLSENNRAPVQLEKTYQKDETRQQERAYQPEQLPAKEVMELLYKQDD 296

Query: 374 -----------NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
                      + +       +  P+ ++   P EE   +         Q+H  YI +Q 
Sbjct: 297 DLLEEEDTSTISAVYEEPPEVNSAPSGNQQQQPDEEQNPSRVPPLYPVGQMHGTYIFAQN 356

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            +GL I+DQHAA ER+ +E  R+     +   Q +L P  ++    E   I+EH ++L +
Sbjct: 357 ENGLYIIDQHAAQERIKYEYYREKVGKVENELQEMLVPITLEYSADEYMKIIEHKDELEK 416

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
           +G+  E FG N+  IR  P  L      +L+ ++I+++++      ++   E     M+C
Sbjct: 417 VGVFLEEFGHNSFIIRSHPQWLPAGQEGELIDEMIEQLLNMKKVD-IKKLREEAAIMMSC 475

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             SI++ + +++ E+  LL E+ ++ +   C HGRP  I   + ++EK+F R
Sbjct: 476 KASIKANQYLKNEEIQALLDELRRSEDPFTCPHGRPIIIHYSVYEMEKMFKR 527


>gi|15617161|ref|NP_240374.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386926|sp|P57633|MUTL_BUCAI RecName: Full=DNA mismatch repair protein mutL
 gi|25403655|pir||D84996 DNA mismatch repair protein mutL [imported] - Buchnera sp.  (strain
           APS)
 gi|10039226|dbj|BAB13260.1| DNA mismatch repair protein mutL [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 584

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 138/524 (26%), Positives = 256/524 (48%), Gaps = 12/524 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + +QI+AGEIIERP+  +KE+IENS+DA S  +  ++   G     + D+G
Sbjct: 1   MPIRILPSDLSSQISAGEIIERPASVVKEIIENSIDAGSKNINIIVENSGFQSIILKDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +AV  H TSKI+   D   + TFGFRGEAL SI AVS LTL+S    N+  
Sbjct: 61  CGIDKKDLLLAVCHHATSKINSLSDLDKLTTFGFRGEALASIRAVSRLTLISCTRFNDVA 120

Query: 119 AQIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           A+I +     K   ++P+A   GT + V +LF+ IP RL FLK++++E + I +V++++A
Sbjct: 121 AKIYLEGFCSKNIILQPIAHPEGTTIIVDNLFYNIPVRLKFLKNKKLEFSKICEVVKKIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +++  ++F+         + N  +   N   R+  +      +  +E+ EK   + L G+
Sbjct: 181 LSHFYINFSLKHNNKLITQYNSINNRKNKINRLKDIFDTLDTSEFLEIKEKKYRMVLFGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P   +   N  Y ++N R + +   ++ +R AY++ I   +    VL L I+   +D
Sbjct: 241 ISHPYNFKKIKNIQYCYVNNRYLYNNIFVNAVRAAYSK-IEQKKNISFVLYLTIESFNID 299

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +N+HP K+ I+F NP ++  FI +++   + K         S K  +  +++   + +  
Sbjct: 300 INIHPTKNEIKFHNPDVVYTFIYEAVFSYLKKIKEKYYFNFSCKKQTQLNKEK--EFYFY 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               +       +FL++ ++  N         +   + P+E+ E+    +G     IH+ 
Sbjct: 358 DSDPTFLTLISSIFLKKKQICKNIKNKIKHNNFISKSTPLEKYES---SIGRLLIIIHKY 414

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y +    +  +++    A   +  +K++ +     I  +  L+   I+L   E  ++   
Sbjct: 415 YGLIYHDNNFLLLSFPVAKGIVRKQKLKNNIQKENI-IEYFLSNIKINLTSQEYLILFNK 473

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            E L + G     F    + +  IPA L K N   ++ +    +
Sbjct: 474 KEILSKFGFHL-IFKKKYVILSSIPAFLKKCNFHIIISNFFAFL 516


>gi|219681912|ref|YP_002468298.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471618|ref|ZP_05635617.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254766162|sp|B8D8D4|MUTL_BUCA5 RecName: Full=DNA mismatch repair protein mutL
 gi|219624755|gb|ACL30910.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086290|gb|ADP66372.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311087454|gb|ADP67534.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 584

 Score =  333 bits (853), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 137/524 (26%), Positives = 255/524 (48%), Gaps = 12/524 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + +QI+AGEIIERP+  +KE+IENS+DA S  +  ++   G     + D+G
Sbjct: 1   MPIRILPSDLSSQISAGEIIERPASVVKEIIENSIDAGSKNINIIVENSGFQSIILKDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +AV  H TSKI+   D   + TFGFRGEAL SI AVS LTL+S    N+  
Sbjct: 61  CGIDKKDLLLAVCHHATSKINSLSDLDKLTTFGFRGEALASIRAVSRLTLISCTRFNDVA 120

Query: 119 AQIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           A+I +     K   ++P+A   GT + V +LF+ IP RL FLK++++E + I +V++++A
Sbjct: 121 AKIYLEGFCSKNIILQPIAHPEGTTIIVDNLFYNIPVRLKFLKNKKLEFSKICEVVKKIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +++  ++F+         + N  +   N   R+  +      +  +E+ EK   + L G+
Sbjct: 181 LSHFYINFSLKHNNKLITQYNSINNRKNKINRLKDIFDTLDTSEFLEIKEKKYRMVLFGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P   +   N  Y ++N R + +   ++ +R AY++ I   +    VL L I+   +D
Sbjct: 241 ISHPYNFKKIKNIQYCYVNNRYLYNNIFVNAVRAAYSK-IEQKKNISFVLYLTIESFNID 299

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +N+HP K+ I+F NP ++  FI +++   + K         S K  +  +++   + +  
Sbjct: 300 INIHPTKNEIKFHNPDVVYTFIYEAVFSYLKKIKEKYYFNFSCKKQTQLNKEK--EFYFY 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               +       +F ++ ++  N         +   + P+E+ E+    +G     IH+ 
Sbjct: 358 DSDPTFLTLISSIFFKKKQIFKNIKNKIKHNNFISKSTPLEKYES---SIGRLLIIIHKY 414

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y +    +  +++    A   +  +K++ +     I  +  L+   I+L   E  ++   
Sbjct: 415 YGLIYHDNNFLLLSFPVAKGIVRKQKLKNNIQKENI-IEYFLSNIKINLTSQEYLILFNK 473

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            E L + G     F    + +  IPA L K N   ++ +    +
Sbjct: 474 KEILSKFGFHL-IFKKKYVILSSIPAFLKKCNFHIIISNFFAFL 516


>gi|313903995|ref|ZP_07837375.1| DNA mismatch repair protein MutL [Eubacterium cellulosolvens 6]
 gi|313471144|gb|EFR66466.1| DNA mismatch repair protein MutL [Eubacterium cellulosolvens 6]
          Length = 772

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 194/366 (53%), Gaps = 6/366 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I  L ++ I+QIAAGE++ERP+  IKEL EN++DA ++ V   I  GG +F +ITDN
Sbjct: 1   MRSIELLDKQTIDQIAAGEVVERPASVIKELTENAIDAGATAVTIEIRDGGTTFMRITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ ++++  A  RH TSKI   +D  NI + GFRGEAL SI AV+ +  +++ P+  T
Sbjct: 61  GAGIPADQVKKAFLRHATSKIRKAEDLVNIASLGFRGEALSSISAVAQVECITKTPEALT 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G        +    GT   +R+LFF  PAR  FLK+   E N ++  +  +A+
Sbjct: 121 GIRYCIEGGVEKEYEEIGAPGGTTFIIRNLFFNTPARAKFLKAPVTEGNHVSSFVEELAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P++SF F     N+    + S NGN  E + Q+ G D     V ++ ++  + + G+ 
Sbjct: 181 SHPEISFKFIQNGQNKL---YTSGNGNLKEIVYQIFGRDLTRELVAVDARTELMHVHGFI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G P   RGN      FINGR V++K I   I  AY   +   +YP  +L L+I   +VDV
Sbjct: 238 GNPNVARGNRTFENYFINGRYVKNKVIAKAIEDAYHGFLMQHKYPFTLLYLDIVSEKVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  +R  +   + + +  +IQ A+  +       L ++   +  Q  A +     
Sbjct: 298 NVHPQKLEVRISDQEGVYHQLCLTIQNALMNRERIPEVPLGREHADASRQKEAERIRQMN 357

Query: 358 YATSLT 363
                 
Sbjct: 358 RNVPEP 363



 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 115/294 (39%), Gaps = 12/294 (4%)

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
              +   I +S    ++     +S    +       +D++        A+  +  QE   
Sbjct: 479 EDSLIPEIPESPLDVLSSNENGSSETGGEAAAEIRTEDHSEIAKEVSSASVASYEQESEQ 538

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEES----------EATHYQLGIACAQIHQNYIIS 420
             E+    +     D     +      E                Q+     Q+   Y + 
Sbjct: 539 TVESVREADAAYTVDKIAEQKRAGTKPEQLNLFEEDKVLSEQARQMFRLIGQVFDTYWMI 598

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +  D L I+DQHAAHE++ +E+M + +    I SQ L    ++DL   E  L+  + +  
Sbjct: 599 EYKDSLYIIDQHAAHEKVNYERMMKAYREKTIHSQMLYPSIVLDLSRREAQLLESNLKTF 658

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
             LG + E FG N+  I  +PA L      +L   I+ E+            I   LA+M
Sbjct: 659 EDLGFEVESFGGNSFKINAVPANLYSVASDELFMQILAELESLGEVS--PKLIPEKLASM 716

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C  +++   ++   E N L+ E+    N   C HGRPT I +   +++K F R
Sbjct: 717 SCKAAVKGNNRLSVEEANALIDELLTLENPYNCPHGRPTIISMTRYEMDKKFKR 770


>gi|313124268|ref|YP_004034527.1| DNA mismatch repair protein mutl [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280831|gb|ADQ61550.1| DNA mismatch repair protein mutL [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 651

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 144/663 (21%), Positives = 264/663 (39%), Gaps = 88/663 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++SR+   +   G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI D  D  NI T GFRGEAL SI AV+H+ +++      T  
Sbjct: 63  GIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILT-SIDGQTAT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + A +G             GT + V D+F+  PARL +LKS + E   I D++ R+A+ +
Sbjct: 122 RAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S T ++       +     NGN  + ++ + G       + +  +  + TL G    
Sbjct: 182 PEISLTLASDGK---VLLRTPGNGNLKQAVANIYGRKVAEKMLTVENEDPDFTLYGLVSE 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + N   + +NGR +++  + S +   Y   +  G+YP+ VL +E DP  VDVNV
Sbjct: 239 ANLTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLG-GKYPIAVLAIEADPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R      +   I  ++ +A+  +  ++        ++ F              
Sbjct: 298 HPTKEEVRLSKEKELSRLITSAVTEALMDEDEASPLF----QLTPFKDKTQLDQLEFNLK 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            ++ +T+     Q       +     D T  ++     E +    +         +   +
Sbjct: 354 PNVVDTRRPDDFQLEVSQVAEPEGKTDITNKKETKETAEKKENKQEEKEEKTSAPEYVDL 413

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           +Q  +    V   +  + +  +     F   +  +          +      L+ +H   
Sbjct: 414 NQVREDDQYVLTKSWDQHVKEQTALPPFAGGEEAASP--------VTSKADQLLRQHLPA 465

Query: 480 LHRL----GIKAERFGPNAIAIREI---------------------------PAIL---- 504
           L  L    G      G +   + ++                           P +     
Sbjct: 466 LRLLGQMGGYLLAEHGGDLYLLDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSV 525

Query: 505 ----SKKNIPQLLRDIIDEIIDSSTTYTL----------------QDRIENILATM---- 540
                 K+   LLR +  E+ D      L                ++ ++ +L++     
Sbjct: 526 YDYQKLKDQLPLLRQLGLEMEDFGQNTLLMHSYPTWLKGEVTVQVRELLDQLLSSRENDG 585

Query: 541 -------ACYGS---IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
                  A   +   +     +   E   LL  ++   +  +   G+   ++L  +D+ K
Sbjct: 586 KSLLKLVAAKAAESNVSRRVNLTGAEAADLLLRLQTASDPYRDASGQVAVVRLSQNDLSK 645

Query: 591 LFG 593
           LF 
Sbjct: 646 LFK 648


>gi|257439841|ref|ZP_05615596.1| DNA mismatch repair protein MutL [Faecalibacterium prausnitzii
           A2-165]
 gi|257197750|gb|EEU96034.1| DNA mismatch repair protein MutL [Faecalibacterium prausnitzii
           A2-165]
          Length = 716

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 115/330 (34%), Positives = 188/330 (56%), Gaps = 5/330 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +     IAAGE++ERP+  +KEL+EN++DA +S++   I  GG    +I+DNG G
Sbjct: 4   IHVLDKHTAELIAAGEVVERPASVVKELLENAIDAGASQITVTIESGGVKLIEISDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +E IP A  RH TSKI   DD ++IHT GFRGEAL SI +V+ + +++R   +   + 
Sbjct: 64  IEAEYIPTAFIRHATSKIRTEDDLNHIHTLGFRGEALASIASVARVEVLTRTENDECASV 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +   + P A   GT + V+DLF+  PAR+ FLK +  E   + D++  +A+++P
Sbjct: 124 YRIEGGEDYPLEPGARGVGTTIRVQDLFYNTPARMKFLKKDSSEGTFVADIVAHVALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSF F      +Y       +G        V+G +F  + +EL+ +     + G    P
Sbjct: 184 EVSFKFVREGKLQYV---TPGDGKLRSAAYAVLGREFSRDLMELDNQEGVYRVWGLITQP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  Y +INGR V+++ +++ + TA+  T   G++P  +LLLE+    VDVNVH
Sbjct: 241 RSCRASRSMQYFYINGRYVRNRTMMAAMETAFKGTTMQGKFPGGILLLEMPADLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           PAK+ +RF     I + +  +++ A+ + G
Sbjct: 301 PAKTEVRFARENDIFDLVYHAVKLALAQPG 330



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 7/243 (2%)

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
              LP++   +         +           + + T  +    V+E  A          
Sbjct: 479 SADLPEHQDHMAAWDPAPKEEMPAAPAPQQTSAAEDTPEQLGFDVQEGPAP----LRYVG 534

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           +I + YI+++  + + I+D+HAAHER +FEK+  ++    + +Q LL P +++L   E  
Sbjct: 535 EIFKTYILAERGEEICIIDKHAAHERQLFEKLAANY--GDVPAQLLLEPLVVELSAEEKT 592

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            ++ + E L   G++ + FG N++ +R +PA + + +   LL ++ D++    +   L +
Sbjct: 593 ALLSNLELLESAGLEIDDFGGNSVFLRSVPADVEQGSAEDLLVELADKLS-KGSRDALSE 651

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           + E +L +++C  +I++G K    E+  L  ++        C HGRP  +KL   ++EK 
Sbjct: 652 KTEWVLHSISCRAAIKAGDKTSPQELMALAEKILSGEVPPFCPHGRPCVLKLTRKELEKQ 711

Query: 592 FGR 594
           FGR
Sbjct: 712 FGR 714


>gi|317131678|ref|YP_004090992.1| DNA mismatch repair protein MutL [Ethanoligenens harbinense YUAN-3]
 gi|315469657|gb|ADU26261.1| DNA mismatch repair protein MutL [Ethanoligenens harbinense YUAN-3]
          Length = 669

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/361 (31%), Positives = 192/361 (53%), Gaps = 5/361 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L + +  +IAAGE++ERP+  +KEL+EN++DA ++ +   I  GG  F ++TD+G 
Sbjct: 3   RIQVLPKAVAEKIAAGEVVERPASVVKELLENAIDAGAAALTLEIQNGGVRFIRVTDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++  A  RH TSK+    D   I T GFRGEAL S+ AVS + L++R      G 
Sbjct: 63  GIPAEDVATAFLRHATSKVHTDGDLEAIGTLGFRGEALASVTAVSKVELITRTADELEGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +IA++G ++    P     GT + VRDLF+  PAR+ FLK +  E N +  V  R+A+++
Sbjct: 123 RIALAGGEVLEQGPAGCPQGTTILVRDLFYNTPARMKFLKKDVTEGNAVRAVAERLALSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S  F               +G     +  V+G DF  + + ++     + + G+   
Sbjct: 183 PEISLKFIKDGREELH---TPGDGKLLSAVHAVLGRDFARDLLPVDYALGSVRITGFVLK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N N  + F+NGR V+ +  ++ +  AY  +I +GR+P  VL + + P  VDVNV
Sbjct: 240 PVSARANRNMQFFFLNGRLVKSRTAMAALEQAYKGSIMVGRFPGCVLHIALPPALVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RF +   +   +  +++  I +K    +  L     +      AP      +A
Sbjct: 300 HPAKTEVRFADEHAVFEAVYYAVKNTIAEKDTRPALRLPGTEQAKPAPFAAPGGSQLHFA 359

Query: 360 T 360
            
Sbjct: 360 P 360



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 11/278 (3%)

Query: 324 KAINKKGISTSSVLSKKMIS-SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
            A+ K     +S      +S +  Q  A     P  A                LST+  +
Sbjct: 395 PALPKWPDRPASAFRASPLSKAGGQTVARAVDSPVAAPGAAPEAGHTVPHTGGLSTHPDV 454

Query: 383 P------SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
           P          +      P    E           Q  + YI+ +  D L ++D+HAAHE
Sbjct: 455 PVETGSPQQTVSEQVVTAPPAVEEGVQPPALRVVGQCFETYILVEEGDALYLIDKHAAHE 514

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           R+++E++++   +     Q LL P  + L   E A ++E+   L   G   E FG   + 
Sbjct: 515 RILYEEIKKQGQAAG---QLLLAPRAVTLAREEYAAVLENFALLRETGFDMEDFGGATVL 571

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +R  P  L +  I   + ++  ++       T  +RI+ +  ++AC  ++++G K    E
Sbjct: 572 VRSAPVYLRESEIVPAVEELAGKLAGFGKDLT-PERIDELYHSVACRAAVKAGDKTGPEE 630

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             RL + + +  +   C HGRP    L   +IEK FGR
Sbjct: 631 AARLAKRVLELDDVRYCPHGRPVAFVLTRGEIEKQFGR 668


>gi|228928817|ref|ZP_04091850.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830842|gb|EEM76446.1| DNA mismatch repair protein mutL [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 548

 Score =  330 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 137/551 (24%), Positives = 236/551 (42%), Gaps = 58/551 (10%)

Query: 97  LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN 156
           +PSI +VS L L++       G  + I G  I      A   GT + V++LFF  PARL 
Sbjct: 1   MPSIASVSELELITSTGDAP-GTHLIIKGGDIIKQEKTASRKGTDITVQNLFFNTPARLK 59

Query: 157 FLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
           ++K+   E   ITD++ R+A+++P+VS      +    K+   S NG+  + ++ +    
Sbjct: 60  YMKTIHTELGNITDIVYRIAMSHPEVSLKLFHNEK---KLLHTSGNGDVRQVLASIYSIQ 116

Query: 217 FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                V +  +S + T++GY  +P   R + N     +NGR V++  ++  I+  Y   +
Sbjct: 117 VAKKLVPIEAESLDFTIKGYVTLPEVTRASRNYMSTIVNGRYVRNFVLMKAIQQGYHTLL 176

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           P+GRYP+  L +E+DP  VDVNVHPAK  +RF     +   I +++Q A  K  +   + 
Sbjct: 177 PVGRYPIGFLSIEMDPMLVDVNVHPAKLEVRFSKEQELLKLIEETLQAAFKKIQLIPDAG 236

Query: 337 LSKKM------------------------------------------------ISSFHQD 348
           ++ K                                                      Q+
Sbjct: 237 VTTKKKEKDESVQEQFQFEHAKPKEPSMPEIVLPTGMDEKQEEPQAVKQPTQLWQPPKQE 296

Query: 349 NAPKTHL----PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATH 403
             P   L      +  S     E+   +E    +N+     +    E  +  E E     
Sbjct: 297 WQPPQSLVREEQSWQPSTKPIIEEPIQEEKSWDSNEEGFELEELEEEVREIKEIEMNGND 356

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                   Q+H  YI +Q   GL ++DQHAA ER+ +E  R          Q LL P  I
Sbjct: 357 LPPLYPIGQMHGTYIFAQNDKGLYMIDQHAAQERINYEYFRDKVGRVAQEVQELLVPYRI 416

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           DL   E   + E  E+L ++G+  E+FG  +  +R  P    K    +++ +++++++  
Sbjct: 417 DLSLTEFLRVEEQLEELKKVGLFLEQFGHQSFIVRSHPTWFPKGQETEIIDEMMEQVVKL 476

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++   E     M+C  SI++ + + + ++  LL E+    N   C HGRP  +  
Sbjct: 477 KKVD-IKKLREEAAIMMSCKASIKANQYLTNDQIFALLEELRTTTNPYTCPHGRPILVHH 535

Query: 584 KLSDIEKLFGR 594
              ++EK+F R
Sbjct: 536 STYELEKMFKR 546


>gi|222480637|ref|YP_002566874.1| MutL dimerisation [Halorubrum lacusprofundi ATCC 49239]
 gi|222453539|gb|ACM57804.1| MutL dimerisation [Halorubrum lacusprofundi ATCC 49239]
          Length = 584

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 148/619 (23%), Positives = 257/619 (41%), Gaps = 79/619 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++R+L    +++IAAGE++ RP+  + ELI+N+LDA +SRVE  + G G    ++ D+G 
Sbjct: 17  RVRRLDPATVDRIAAGEVVTRPARVVGELIDNALDAGASRVEVAVEGDGTDRIRVDDDGR 76

Query: 62  GMTSEEIPMAVQRHCTSKISDDFS--NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +AV+RH TSK++ D     + + GFRGEAL +I   + L L++    +  G 
Sbjct: 77  GMSREDARLAVERHATSKLAPDGDPVGVGSLGFRGEALAAIAEAARLELVT-SDGDPVGT 135

Query: 120 QIA------ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
           ++              +V       GT V V DLF T PAR   L     E   ++ ++ 
Sbjct: 136 RVVVGGAASDLDSDGPAVTDAGRARGTTVVVEDLFATRPARRESLAGSAAEFARVSSLVA 195

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--- 230
             A+A P V+FT     S        +      E +  V   +  + + E+         
Sbjct: 196 DYALANPGVAFTLDHDGSRTLS----TPGSGITEALLGVYDRETASRSTEIAASVEIERE 251

Query: 231 -------------ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                        + + G    P+  R + +   V +NGR V++  + + +R  Y   +P
Sbjct: 252 GGGVGGDGAASTAVEVAGALAYPSVTRSSRDHVRVSVNGRPVRNDRLAAAVRAGYGRLLP 311

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
            GR PV  + + + P +VD NVHPAK  +  R+   + + +   +  A+    +   + +
Sbjct: 312 DGREPVATIDVSLQPARVDPNVHPAKREVGLRDADAVADAVESVVADALTGADLRRKAEV 371

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
              +  +                                                    E
Sbjct: 372 ETGLDGALEPVGGE---------------------------------------------E 386

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                 +            Y++ +  D L++VD HAAHER+ +E + + F+   + +  L
Sbjct: 387 GERLATFADADPIGTFCDLYLLVEAGDELLVVDGHAAHERVNYEWLARAFDGEAVPTADL 446

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
             P  + L   E A    H + L  LG + E FG   + +R +PA           RD +
Sbjct: 447 DPPVAVSLSADEAAAAEAHADALAALGFETEPFGGGTVRLRTVPAPFGHAVDATAFRDAL 506

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRK--MQSIEMNRLLREMEKNPNSSQCNH 575
             +   S   + +D  E +LA +AC+ S++ G    + + E+  LL  + +      C H
Sbjct: 507 ATL---SGGASPRDARETLLADLACHPSLKRGEIGDLDAEELRSLLDRLGECDRPYACPH 563

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT + +  +     FGR
Sbjct: 564 GRPTVLSVDEATFAAGFGR 582


>gi|8928224|sp|P74925|MUTL_THEMA RecName: Full=DNA mismatch repair protein mutL
 gi|1575786|gb|AAB09596.1| DNA mismatch repair protein [Thermotoga maritima]
          Length = 510

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 150/596 (25%), Positives = 258/596 (43%), Gaps = 88/596 (14%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I++L E ++ +IAAGE+I  PS  +KEL+ENSLDA++ R+   I  GGK+  +++DNG
Sbjct: 1   MRIKRLPESLVRKIAAGEVIHNPSFVLKELVENSLDAQADRIVVEIENGGKNMVRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            GMT EE  +A++ + TSKI   +D   I T+GFRGEAL SI  VS   ++++  ++   
Sbjct: 61  IGMTREEALLAIEPYTTSKIESEEDLHRIRTYGFRGEALASIVQVSRAKIVTKTEKDALA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            Q+ I+G K+  +     + GT VEVRDLFF +P R   LKS  +E  +  ++  R  + 
Sbjct: 121 TQLMIAGGKVEEISETHRDTGTTVEVRDLFFNLPVRRKSLKSSAIELRMCREMFERFVLV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              V F F++       ++      N  ER + +I ED     +   E+ + + ++G   
Sbjct: 181 RNDVDFVFTSDGKI---VHSFPRTQNIFER-ALLILEDLRKGYITFEEELSGLRIKGIVS 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                R +    Y ++NGR V  + +   +   Y   +P   YPV VL +E+        
Sbjct: 237 SREVTRSSRTGEYFYVNGRFVVSEELHEVLMKVYD--LPKRSYPVAVLFIEV-------- 286

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            +P +  +      I+  F+                           +++   K+     
Sbjct: 287 -NPEELDVNIHPSKIVVKFL---------------------------NEEKVKKSLEETL 318

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
             +L     +    E                S     V E+ +  +        +   Y 
Sbjct: 319 KRNLARKWYRSVAYEE--------------ISSRALSVAEAPSHRW------FLVKGKYA 358

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           + +  DGL+ VD HA HER I+E++    +  K   +  +T            L  E  +
Sbjct: 359 VVEVEDGLLFVDLHALHERTIYEEILSKKSWGKRRVKRNIT----------VVLSREEKQ 408

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            L   G   +     A+ + EIP  L++  + +  RD             + ++++  +A
Sbjct: 409 KLEEYGFSFQGE-EGALKVIEIPEFLTEDVVEEFFRDF-----------PVDEKLKERIA 456

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             AC  + +SG      E+   L ++       +C HGRP   K+   D+++ F R
Sbjct: 457 LAACKLATKSGEF--DEEIASKLLDVFFKKRFERCPHGRPISFKISYEDMDRFFER 510


>gi|292654719|ref|YP_003534616.1| DNA mismatch repair protein MutL [Haloferax volcanii DS2]
 gi|291370271|gb|ADE02498.1| DNA mismatch repair protein mutL [Haloferax volcanii DS2]
          Length = 735

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 126/404 (31%), Positives = 200/404 (49%), Gaps = 15/404 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L EK + +IAAGE++ERP+  +KEL ENSLDA+++R+   +  GG    +I D+G G
Sbjct: 4   IKQLDEKTVQRIAAGEVVERPASVVKELFENSLDADATRISVAVDAGGVEGVRIRDDGVG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           M+ E++ +AV+ H TSKI D  D    + T GFRGEAL +IGAVS LT+ S+P   + G 
Sbjct: 64  MSEEDLELAVREHTTSKIGDIEDLEAGVGTLGFRGEALHTIGAVSRLTIRSKPRGGDVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++   G ++ S+RP     GT+VEV DLF+  PAR  FLK+   E + +  V+   A+A 
Sbjct: 124 ELQYEGGEVESIRPAGCPKGTVVEVDDLFYNTPARRKFLKTTATEFDHVNAVVTHYALAN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+ +        +        G+    +  V G +   + V ++  +  +++ G    
Sbjct: 184 PDVAVSLEHDDREVF---ATEGRGDLQSTVLSVYGREVAESMVPVDHDAPGVSVSGLVSH 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   +    F+N R V D+ +   +  AY   +   RYP  VL +E+ P  VDVNV
Sbjct: 241 PETTRSTRDYLSTFVNDRYVTDRVLREAVLDAYGGQLDADRYPFAVLFVEVAPDAVDVNV 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +R+ +   ++  + ++++ A+   G+  SS    +  +                
Sbjct: 301 HPRKMEVRWDDEAGVKREVTEAVEDALLSHGLVRSSAPRGRSKAD---------EAAIEP 351

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
            S  +   +L   E R S  D    DD       D     EA  
Sbjct: 352 GSSGDDATQLDPHEVRESEPDGETDDDADPPSARDVQSAREARE 395



 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/280 (24%), Positives = 117/280 (41%), Gaps = 18/280 (6%)

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
            TS   S         D AP     + ++  T+   +     +  S+ D    D+   S 
Sbjct: 445 PTSVPSSAPPTPPREYDLAPGPETTEQSSLSTDDGSESRSTPDEASSVDSGADDNAPRSP 504

Query: 392 DNDPVEES--------------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            +     +              E           Q+   YI+++T +GLV+VDQHAA ER
Sbjct: 505 PSRIAAPTTQRDLSGEEADLSPEFDSLPSMRIIGQLSDTYIVAETDEGLVLVDQHAADER 564

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           + +E++R +       +Q L  P  ++L   E AL  E+ E L ++G  A R G   +++
Sbjct: 565 VNYERLRGEVEGDT-PTQALAEPVDLELTAREAALFEEYREALAQVGFHAGRTGERTVSV 623

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDS---STTYTLQDRIENILATMACYGSIRSGRKMQS 554
           R +PA+      P+LLRD +   +         T+    + +L+ +ACY SI     ++ 
Sbjct: 624 RTVPAVFDAALDPELLRDALTAFVREEVDGGRKTVDAVADELLSDLACYPSITGNTSLRE 683

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             +  LL  ++   N   C HGRP  ++    +I   F R
Sbjct: 684 GSVLDLLAALDDCENPYACPHGRPVIVEFDRDEIASRFER 723


>gi|311086866|gb|ADP66947.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 584

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 137/524 (26%), Positives = 255/524 (48%), Gaps = 12/524 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L   + +QI+AGEIIERP+  +KE+IENS+DA S  +  ++   G     + D+G
Sbjct: 1   MPIRILPSDLSSQISAGEIIERPASVVKEIIENSIDAGSKNINIIVENSGFQSIILKDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +AV  H TSKI+   D   + TFGFRGEAL SI AVS LTL+S    N+  
Sbjct: 61  RGIDKKDLLLAVCHHATSKINSLSDLDKLTTFGFRGEALASIRAVSRLTLISCTRFNDVA 120

Query: 119 AQIAIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           A+I +     K   ++P+A   GT + V +LF+ IP RL FLK++++E + I +V++++A
Sbjct: 121 AKIYLEGFCSKNIILQPIAHPEGTTIIVDNLFYNIPVRLKFLKNKKLEFSKICEVVKKIA 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           +++  ++F+         + N  +   N   R+  +      +  +E+ EK   + L G+
Sbjct: 181 LSHFYINFSLKHNNKLITQYNSINNRKNKINRLKDIFDTLDTSEFLEIKEKKYSMVLFGW 240

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P   +   N  Y ++N R + +   ++ +R AY++ I   +    VL L I+   +D
Sbjct: 241 ISHPYNFKKIKNIQYCYVNNRYLYNNIFVNAVRAAYSK-IEQKKNISFVLYLTIESFNID 299

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           +N+HP K+ I+F NP ++  FI +++   + K         S K  +  +++   + +  
Sbjct: 300 INIHPTKNEIKFHNPDVVYTFIYEAVFSYLKKIKEKYYFNFSCKKQTQLNKEK--EFYFY 357

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               +       +F ++ ++  N         +   + P+E+ E+    +G     IH+ 
Sbjct: 358 DSDPTFLTLISSIFFKKKQIFKNIKNKIKHNNFISKSTPLEKYES---SIGRLLIIIHKY 414

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y +    +  +++    A   +  +K++ +     I  +  L+   I+L   E  ++   
Sbjct: 415 YGLIYHDNNFLLLSFPVAKGIVRKQKLKNNIQKENI-IEYFLSNIKINLTSQEYLILFNK 473

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            E L + G     F    + +  IPA L K N   ++ +    +
Sbjct: 474 KEILSKFGFHL-IFKKKYVILSSIPAFLKKCNFHIIISNFFAFL 516


>gi|168211841|ref|ZP_02637466.1| DNA mismatch repair protein MutL [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710219|gb|EDT22401.1| DNA mismatch repair protein MutL [Clostridium perfringens B str.
           ATCC 3626]
          Length = 675

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 233/485 (48%), Gaps = 15/485 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L+    N+IAAGE++ERPS  +KEL+ENSLDA +  +   I  GG+S  +I D+G 
Sbjct: 3   RINILNADTANKIAAGEVVERPSSVVKELVENSLDAGAKNITIEIQNGGESLIKIIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++  A   H TSKI D  D  +I+T GFRGEALPSI +++ +   S+    + G 
Sbjct: 63  GVHPEDVEKAFNPHATSKIKDTYDIFSINTLGFRGEALPSIASIARVDFKSKVSDFDMGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ ISG +  S+   +MN GT +EVRDLFF +PAR  FLK+   E+ LI D++ R+++A 
Sbjct: 123 ELVISGGEKESLTDCSMNIGTQIEVRDLFFNVPARKKFLKTTARESALINDLVNRISLAN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF          K+     NG   + I  + G+    N +   E  +  ++ G+ G 
Sbjct: 183 PDVSFKLFNNNK---KILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFIGN 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            T  R + N   +F+N R V+++ +   +  A+      G++P  VL ++  P  +DVN+
Sbjct: 240 DTLARASRNNQSLFVNKRYVKNRSLTVAVENAFRSFNVTGKFPFFVLFIDTYPELIDVNI 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKK--GISTSSVLSKKMISSFHQDNAPKTHLPK 357
           HP KS I+F++   I   +  ++  A+ +      T     +K   +  ++   ++   +
Sbjct: 300 HPTKSEIKFKDERFIFKVVFDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDKE 359

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
            +     T EKL    N   + D    +  +Y+   D   ++E       ++     +++
Sbjct: 360 IS-----TLEKLKENINYKVSEDRKKEEIYSYNPSKDYEAKTEINIPVDFLSKENQEESF 414

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            I+ + + L   + +   E     ++  D    K   +  ++               EH 
Sbjct: 415 SINNSFNSL---ENNEFKEVSHKREISYDPILIKNELKDKVSETDSLETSDYKCNKNEHG 471

Query: 478 EDLHR 482
             L  
Sbjct: 472 NSLEE 476



 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 6/274 (2%)

Query: 324 KAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL---TNTQEKLFLQENRLSTND 380
             ++K+    S  ++    S  + +    +H  + +       N  +    + + L T+D
Sbjct: 403 DFLSKENQEESFSINNSFNSLENNEFKEVSHKREISYDPILIKNELKDKVSETDSLETSD 462

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
              + +   +   + + +             Q ++ YI+++    L ++DQHAAHE+++F
Sbjct: 463 YKCNKNEHGNSLEETIYKEAKF--PKLRVIGQFNKTYILAEYDSTLYLIDQHAAHEKILF 520

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI 500
           +K   D    K+  Q L+ P ++ L   +     E+ E   + G K   FG N+I I E+
Sbjct: 521 DKYSSDIAKKKVEIQPLMIPLVVTLPTEDYLYYDENKEIFEKAGFKISDFGDNSIRIEEV 580

Query: 501 PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           P  L K N  +L+  +I+ +    T  T++ +   I A+M+C  ++++   +  +EM  L
Sbjct: 581 PYFLDKLNPTELITSMINNLKKMGTGETVEVKYNKI-ASMSCRAAVKANDVLSILEMENL 639

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++++    +   C HGRPT IK    +++K F R
Sbjct: 640 IKDLRYINDPFHCPHGRPTIIKFTSYELDKKFKR 673


>gi|229824837|ref|ZP_04450906.1| hypothetical protein GCWU000182_00186 [Abiotrophia defectiva ATCC
           49176]
 gi|229790840|gb|EEP26954.1| hypothetical protein GCWU000182_00186 [Abiotrophia defectiva ATCC
           49176]
          Length = 724

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 117/340 (34%), Positives = 187/340 (55%), Gaps = 11/340 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  IN+IAAGE+IE P+  +KEL+EN++DA+++ V   I  GG S  ++TDNG G
Sbjct: 4   INLLDKDTINKIAAGEVIEGPAAVVKELVENAIDADANSVTVEIKDGGTSLIRVTDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + S++I  A   H TSKI  +DD   + + GFRGEAL SI AVS + ++++     +G +
Sbjct: 64  IGSDDIKTAFLPHATSKIKTADDLVLVSSLGFRGEALASIAAVSEVEVLTKTADEISGIR 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I+G K  +  P+    GT   VR++F+  PAR  FLK+   E   + +V+  MA+++P
Sbjct: 124 YVINGGKEEANEPIGTPEGTTFVVRNIFYNTPARKKFLKTAATEGRYVGEVMEHMAVSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS------NEITLQ 234
           +++F F      + +      NG+  + +  + G++   N + +N         N ++++
Sbjct: 184 EIAFKFILNGQVKLQTM---GNGSLKDVLFYIYGKETTANIIPVNNPDAEGELVNGLSVR 240

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY G P+  RGN      FINGR +++K I   I  AY   +   R+P   LL+ +D   
Sbjct: 241 GYIGKPSLTRGNKEYENYFINGRFIKNKVITRAIEDAYKSFLMQHRFPFTCLLISVDSSL 300

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           VDVNVHPAK  +RF +   +   I   +  A+ KK +   
Sbjct: 301 VDVNVHPAKLEVRFSDTESLYRLIFHEVDNALRKKDLLPD 340



 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 3/297 (1%)

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           +V+ ++      N   I    +   +K+      ST     KK   + H ++  +     
Sbjct: 429 DVNSSELNKILENKNEISFDNLDEDKKSNAANVNSTFVEDDKKTAGNEHIESVEEEGTAY 488

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
              S  N +E     +           ++ +  +    +   +A          QI   Y
Sbjct: 489 KKISDYNEEETAINIKTTTVEPGSETDNELSSEDFKGGILAKKALPDI--KIIGQIFGTY 546

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            I +    + ++DQHAAHE++++EK  ++ ++ K+TSQ LL P ++ L   +  ++ E  
Sbjct: 547 WIMEFDGSVYMIDQHAAHEKVMYEKFVKEISANKVTSQNLLPPVVVTLSGSQRQIVEEIS 606

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             LH+LG + E FG N   I+ +P  L   +  ++  DIID+        T  D + + L
Sbjct: 607 NYLHKLGFEIEPFGGNEYVIKAVPTELFGISEKEMFFDIIDQYSLEGKKAT-PDTVLSKL 665

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ATMAC  +I+    +  +E+  L+ E+    N   C HGRPT I +  SD+EK F R
Sbjct: 666 ATMACKAAIKGNMNISLLEVKALIEELMSLDNPYNCPHGRPTMIFMSKSDVEKKFKR 722


>gi|210621372|ref|ZP_03292608.1| hypothetical protein CLOHIR_00551 [Clostridium hiranonis DSM 13275]
 gi|210154796|gb|EEA85802.1| hypothetical protein CLOHIR_00551 [Clostridium hiranonis DSM 13275]
          Length = 664

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/403 (33%), Positives = 204/403 (50%), Gaps = 12/403 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L E  IN+IAAGE++ERPS  +KEL+ENS+DA + R+   +  GGKS  +ITDNG 
Sbjct: 4   RINLLDEITINKIAAGEVVERPSSIVKELVENSIDAGADRIIIEVENGGKSLIKITDNGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S E+     RH TSKI   DD  N+ T GFRGEAL SI AVS L + ++      G 
Sbjct: 64  GIPSSEVKKCFLRHATSKIDKIDDLFNLFTLGFRGEALASICAVSKLEMTTKFEDEAVGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G  I +   V  N GT + ++DLFF  PAR  FLK++  E   ITD++ ++AI Y
Sbjct: 124 KITLVGGNIEAKEAVGANTGTSIVIKDLFFNTPARKKFLKTDHAELMNITDIVNKLAIGY 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F +               +G     +  +   +   N +E+N   +   + GY G 
Sbjct: 184 PNVKFRYLNAGKLMVN---TPGDGKLVSAVRSIYSREVSENLIEINYDCSLFKIDGYIGN 240

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R N N  +++INGR V+ K I   I  AY   IP+ ++ V  + L +DP++VDVN+
Sbjct: 241 NNIYRSNRNLQHIYINGRFVKSKIIYDAIANAYKSIIPINKHAVCFINLHLDPQKVDVNI 300

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--TSSVLSKKMISSFHQDNAPKTHLPK 357
           HP K  ++F     I+  I++ I+  + K+ +     +        +  QD   K +   
Sbjct: 301 HPGKIEVKFEKENEIKLEIMEYIRAKLLKQSLIGKYETFDRVPKDRAVKQDFIEKNNF-- 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
             T+     EK     N     D   +   + +E N  +++ E
Sbjct: 359 --TTKQGFIEKTDFNNNTFKNQDFGNASQYS-NEMNSKIDDKE 398



 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 3/224 (1%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           L+ N   +            E  D  ++      +       +   YI+ Q  + + ++D
Sbjct: 442 LENNNKISETESQMAFTAEGEILDSEKKEAGFSLKYYKVVGVVFDTYIVLQKGESMYLMD 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHER++FE+    F+  ++  Q LL P +++L   +   + ++ +     G + E F
Sbjct: 502 QHAAHERVLFERYMNAFHKREVHMQMLLDPIVLELSSVDMLQVEKNLDIFRNFGFEVEIF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G N I IR +P +       + + ++ID I   S  Y L+D      A MAC  +I++  
Sbjct: 562 GMNNILIRGVPNLFGTPQSEKFILELIDNIDKISNNYDLKDDR---FAIMACKSAIKAND 618

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++Q+IE+  L +++EK  N   C HGRPT +++   +IEK+F R
Sbjct: 619 RIQNIEIESLFKQLEKCENPYTCPHGRPTMVEISKVEIEKMFKR 662


>gi|295100784|emb|CBK98329.1| DNA mismatch repair protein MutL [Faecalibacterium prausnitzii
           L2-6]
          Length = 717

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 188/330 (56%), Gaps = 5/330 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +     IAAGE++ERP+  +KEL+ENS+DA +S++   I  GG    +I+DNG G
Sbjct: 4   IHVLDKHTAELIAAGEVVERPASVVKELLENSIDAGASQITVSIESGGVRLIEISDNGTG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++ IP A  RH TSKI   DD ++IHT GFRGEAL SI +V+ + +++R   +   + 
Sbjct: 64  IEAKYIPTAFIRHATSKIRTEDDLTSIHTLGFRGEALASIASVARVEVLTRTEADECASL 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +   + P A   GT + V DLFF  PAR+ FLK +  E   + DV+  +A+++P
Sbjct: 124 YRIEGGEEQPIEPGARGVGTTIRVYDLFFNTPARMKFLKKDSSEGTFVADVVGHLALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSF F      +Y       +G        V+G +F  + VE++ +     + G    P
Sbjct: 184 EVSFKFIREGKLQYV---TPGDGQLRSAAYAVLGREFSRDLVEVDNREGVYRVWGLITQP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  Y +INGR V+++ +++ +  A+  T+  G++P  +LLLE+    VDVNVH
Sbjct: 241 RSCRASRSMQYFYINGRYVRNRTMMAGMEMAFKGTMMQGKFPGGILLLEMPADLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           PAK+ +RF     I + +  +++ A+++ G
Sbjct: 301 PAKTEVRFARENDIFDLVYHAVKLALSQPG 330



 Score =  160 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 108/211 (51%), Gaps = 3/211 (1%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           SD+P  S   + +        +      +I + YI+++  D + I+D+HAAHER +FEK+
Sbjct: 508 SDEPQQSAAPEQLGFDVQDGPEPLRYVGEIFRTYILAERGDEICIIDKHAAHERQLFEKL 567

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
              +    + SQ LL P ++++   E   ++ + + L   G++   FG +++ +R +PA 
Sbjct: 568 AAHY--GDVPSQLLLEPLVVEISAEEKTALLTNLDLLESAGLEVSDFGGSSVCLRSVPAD 625

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           + + +   LL ++  ++    +   L +R E +L +++C  +I++G      E+  L  +
Sbjct: 626 VEQGSAEDLLVELAAKLA-HGSRDALNERTEWVLHSISCRAAIKAGDHTSPQELMALAEK 684

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +        C HGRP  +KL   ++EK FGR
Sbjct: 685 ILSGEVPPFCPHGRPCVLKLTRKELEKQFGR 715


>gi|241767114|ref|ZP_04764883.1| DNA mismatch repair protein MutL [Acidovorax delafieldii 2AN]
 gi|241362303|gb|EER58309.1| DNA mismatch repair protein MutL [Acidovorax delafieldii 2AN]
          Length = 400

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 117/331 (35%), Positives = 189/331 (57%), Gaps = 11/331 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+  ++EL++N+LD+ ++++   +  GG     + D+G 
Sbjct: 13  PIRDLPDELISQIAAGEVVERPASVVRELVDNALDSGATQITVRLLAGGVRLIAVEDDGC 72

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A++RH TSKI+   D   + T GFRGEAL +IG+VS + L+SRP       
Sbjct: 73  GIPQEELPIALRRHATSKITSLSDLETVATMGFRGEALAAIGSVSEMALLSRPAHQPGAF 132

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A   GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 133 LLDARSGEL---RPAARGTGTTVEVKELFFSTPARRKFLKTDATELAHCIESVRRHALAR 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN------FPERISQVIGEDFINNAVELNEKSNEITL 233
           P V F          +     T G+         R++ V+GEDF+  +V +  +   +T+
Sbjct: 190 PDVGFAIWHEGKLVEQWRATFTPGDANVQDALARRLADVLGEDFVAQSVAVQHRVGPVTV 249

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G  G+P   R  A+  Y ++NGR V+DK +    R+AY + +   + P   L +EIDP 
Sbjct: 250 TGRAGLPDAARSRADHQYCYVNGRFVRDKVLTHAARSAYEDVLHGHKQPAYALYVEIDPA 309

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
           +VDVNVHP K  +RFR+   +   +  +++ 
Sbjct: 310 RVDVNVHPTKIEVRFRDSREVHQAVRHAVEN 340


>gi|187779608|ref|ZP_02996081.1| hypothetical protein CLOSPO_03204 [Clostridium sporogenes ATCC
           15579]
 gi|187773233|gb|EDU37035.1| hypothetical protein CLOSPO_03204 [Clostridium sporogenes ATCC
           15579]
          Length = 664

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 217/466 (46%), Gaps = 19/466 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDANAKNITIEIEDGGQRLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVASYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + ++  I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSTRSDSTAISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP KS ++F++   +   I  ++ +AI ++   + +    K      +D           
Sbjct: 300 HPTKSEVKFKDERAMFKAIFDAVHEAIKEELKESFTNFFNK------EDINIYDSEKSMG 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            ++   +E++ +  +  + N +    +   S       E        G    +I+ N  I
Sbjct: 354 ETIKTEKEEVQIPIDLNNNNKIHIFGNNINSSTKTNNIEPAKDENIEGKNIFEINNNSSI 413

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           S+  +            +   E +  + N  + +S+          
Sbjct: 414 SKQDEVYYN--------KNNTEYLNSNNNKEESSSKQDNKNPNTLY 451



 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 1/234 (0%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           +  N +E+   +++  + N L  +++ T S   +  E +    Y       Q +  YI+ 
Sbjct: 430 NSNNNKEESSSKQDNKNPNTLYINENDTTSSSINIKENNPTNFYIDMKIIGQFNNTYILI 489

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +    L I+DQHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+    
Sbjct: 490 EKDKELYIIDQHAAHEKVLFEKFKSEIEKGYVISQILLSPVVIELSEDEFNIYEENKYIF 549

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G   E FG   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+
Sbjct: 550 KNSGFSVEAFGEYTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATL 608

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AC  ++++   ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 609 ACKSAVKANDTLKEEEIKKLIEDMLILDNPYTCPHGRPTMIKFTLKDLEKKFKR 662


>gi|148270035|ref|YP_001244495.1| DNA mismatch repair protein MutL [Thermotoga petrophila RKU-1]
 gi|147735579|gb|ABQ46919.1| DNA mismatch repair protein MutL [Thermotoga petrophila RKU-1]
          Length = 516

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 153/595 (25%), Positives = 262/595 (44%), Gaps = 88/595 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L E +I +IAAGE+I  PS  +KEL+ENSLDA+++R+   I  GGK+  +++DNG 
Sbjct: 8   RIKRLPESLIRKIAAGEVIHNPSFVLKELVENSLDAQATRIVVEIENGGKNMVRVSDNGI 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT EE  +A++ + TSKI   +D   I T+GFRGEAL SI  VS   ++++  ++    
Sbjct: 68  GMTREEALLAIEPYTTSKIENEEDLQRIRTYGFRGEALASIVQVSRTRIVTKTEKDALAT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ I+G K+  +     + GT VEVRDLFF +P R   LKS  +E  +  ++  R  +A 
Sbjct: 128 QLVIAGGKVEEISETHRDIGTTVEVRDLFFNLPVRRKSLKSSAIELRMCREMFERFVLAR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F F++       ++      N  ER + +I ED     +   E+ + + + G    
Sbjct: 188 NDVDFVFASDGKI---VHSFPKTQNIFER-ALLILEDLRKGYITFEEELSGLRINGIVSS 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R +    Y ++NGR V    +   +   Y   +P   YP+V+L +E         V
Sbjct: 244 REVTRSSRTGEYFYVNGRFVVSDELHEVLMKVYD--LPKRSYPIVILFIE---------V 292

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           +P +  +      I+  F+                           +++   K+      
Sbjct: 293 NPEELDVNIHPSKIVVKFL---------------------------NEEKVKKSLEEVLK 325

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +L     +    E  +S+  L  ++ P+Y                       +   Y +
Sbjct: 326 KNLARKWYRSVTYE-EISSRALSVAEAPSYR-------------------WFLVKGKYAV 365

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  DGL+ VD HA HER I+E++    +  K   +  +T            L  E  + 
Sbjct: 366 VEVEDGLLFVDLHALHERTIYEEILSKKSWGKRPVKKNIT----------VVLSREEKQK 415

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G   +     A+ + EIP  L++  + +  RD            ++ ++++  +A 
Sbjct: 416 LEEYGFSFQGE-EGALKVIEIPEFLTEDVVEEFFRDF-----------SVDEKLKERIAL 463

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  + +SG        ++LL    K     +C HGRP   K+   D+++ F R
Sbjct: 464 AACKLATKSGEF-DEETTSKLLDVFFK-KRFERCPHGRPISFKISYEDMDRFFER 516


>gi|291530259|emb|CBK95844.1| DNA mismatch repair protein MutL [Eubacterium siraeum 70/3]
          Length = 677

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/329 (34%), Positives = 181/329 (55%), Gaps = 6/329 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR L + +   IAAGE+IERPS  IKEL+ENS+DA +  +   I  GG S+ +ITD+
Sbjct: 1   MPEIRLLDKSVAELIAAGEVIERPSSVIKELVENSIDAGARHITVEIKHGGISYMRITDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++P A  RH TSKI   DD + I T GFRGEAL S+ AV+ + +MSR   +  
Sbjct: 61  GCGIAYDQMPTAFLRHATSKIRTGDDLTGIMTMGFRGEALASVAAVAKIEMMSRQDGDEL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G +           GT + +++LF+  PARL FLK +  E N I   + R+A+
Sbjct: 121 GGRYIIEGGEEKEHESCGCPTGTTIVIKELFYNTPARLKFLKKDISEGNFIAATVDRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F         +   S +G+       V G  F ++ + ++   N I + GY 
Sbjct: 181 SHPDISFRFIRDNK---SVRMTSGDGSLLSAAKAVFGRQFADSLIPVDFSLNGIDVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R + +    F+N R ++    ++ +  AY  ++ +G++P  +L + + P  VDV
Sbjct: 238 SSPLFCRNSRSMQTFFVNTRYIKSTTCMAALEEAYRNSMMVGKFPACILNISLSPETVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHPAK+ IRF     + + +  +++ A+
Sbjct: 298 NVHPAKTEIRFAYEKPVFDAVYFAVKNAL 326



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 109/250 (43%), Gaps = 8/250 (3%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHY 404
               + H+P Y    ++    +    + +        +   +        E         
Sbjct: 432 PLPKEPHIPSYKAVSSSVVVTVDDDTDDIPVTAPQTDEGFRFINAKPVTVERIDEPKPEK 491

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  +  + YI+ +  + L+I+D+HAAHER+ FEK++++F +   TSQ L+    + 
Sbjct: 492 TSVRVIGEFLKTYILCEAGEELIIIDKHAAHERIRFEKLKEEFVT---TSQLLIDKTELK 548

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   + E+ E + + GI+      + + I  +P+++ K +  +++ D+   +++++
Sbjct: 549 LSPEEYEALHEYYEYVEQSGIELVFCDDSTVQITAMPSVV-KCSPQEIVSDVAQRLMNTA 607

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           T        +++L TMAC  +I++      +E+  L   +  +     C HGRP    L 
Sbjct: 608 TDQK-GALFDDMLHTMACKSAIKAHDDTDILELQALADRVMNDRTIRFCPHGRPVMTSLS 666

Query: 585 LSDIEKLFGR 594
              IE+ F R
Sbjct: 667 KYRIERFFNR 676


>gi|225165694|ref|ZP_03727494.1| DNA mismatch repair protein MutL [Opitutaceae bacterium TAV2]
 gi|224800058|gb|EEG18487.1| DNA mismatch repair protein MutL [Opitutaceae bacterium TAV2]
          Length = 349

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 129/336 (38%), Positives = 206/336 (61%), Gaps = 6/336 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK +R+L++++ NQIAAGE+IERP+  IKEL+ENSLDA ++R+E   A GG+S  +I DN
Sbjct: 1   MKHVRRLTDRVANQIAAGEVIERPAAVIKELMENSLDAGATRIEVEFAHGGRSLMRIEDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM  ++  +A++RH TSKI  +DD +++ +FGFRGEALPSI +VS  TL +RP  +++
Sbjct: 61  GHGMLRDDAVLAIERHATSKINEADDLNSLGSFGFRGEALPSIASVSKFTLQTRPAGSDS 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G ++ I+G K+  VR      GT +EV  LF ++PAR  FLK++  E+  I   +R  A+
Sbjct: 121 GTEVHINGGKLVHVRDCGRAVGTRIEVAQLFNSVPARRKFLKTDATESAHIISCVRLYAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A+P VSFT        ++           +R++++ G    +  + ++   + + L+G  
Sbjct: 181 AFPSVSFTLIEDGRTIFRSPECPA---LVDRVAEIFGGQLASTLIPIDAHDDGMELRGLI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R   ++   F+N R V ++ +   +  +Y + +P GRYP   L ++IDP QVDV
Sbjct: 238 ARPGPGRATRHEMITFVNQRPVDNRTLTYALIESYHDMMPKGRYPAAFLFIDIDPAQVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
           NVHPAK  +RFR+   +R F+I+S+ + + + G   
Sbjct: 298 NVHPAKREVRFRSEPQVRGFVIRSVLQTLRELGPLP 333


>gi|237795208|ref|YP_002862760.1| DNA mismatch repair protein [Clostridium botulinum Ba4 str. 657]
 gi|259509929|sp|C3KX34|MUTL_CLOB6 RecName: Full=DNA mismatch repair protein mutL
 gi|229264105|gb|ACQ55138.1| DNA mismatch repair protein [Clostridium botulinum Ba4 str. 657]
          Length = 666

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/341 (34%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSAISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFENHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++ +AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNK 340



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + ++L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKDNKNLDNLYLNEHNTNSSSINIKENKPNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKSEIEKGYVVSQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVEAF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GECTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|332526665|ref|ZP_08402767.1| DNA mismatch repair protein MutL [Rubrivivax benzoatilyticus JA2]
 gi|332111068|gb|EGJ11100.1| DNA mismatch repair protein MutL [Rubrivivax benzoatilyticus JA2]
          Length = 361

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 117/362 (32%), Positives = 188/362 (51%), Gaps = 11/362 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L +++++QIAAGE++ERP+  ++EL++N+LDA +  +   +A GG     + D+G 
Sbjct: 9   PIRELPDELVSQIAAGEVVERPASVVRELVDNALDAGARAIVVRLAAGGVRSIVVEDDGC 68

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A++RH TSKI    +  ++ T GFRGEAL +I +VS + + SR      G 
Sbjct: 69  GIPMEELPLALKRHATSKIGSLGELESVRTMGFRGEALAAIASVSEMAITSRSADAAHGW 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     ++   +P A   GT VEV +LFF+ PAR  FLKSE  E     D +RR A+A 
Sbjct: 129 RVDARSGEL---QPAARAQGTTVEVHELFFSTPARRKFLKSEATELAHALDAVRRHALAR 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F          +           +R+  V+G DFI  +  L   +  + L G  G 
Sbjct: 186 PDVGFAVWHEGRAVAQWRAAGA----EQRLGDVLGRDFITASRPLEAAAGPLQLWGRAGQ 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R   +  Y+F+NGR V+D+ +   +R AY + +   + P   L L+I+P  VDVNV
Sbjct: 242 PEAARSRTDLQYLFVNGRYVRDRLVSHAVRAAYEDQLHGSKQPAYALFLQIEPELVDVNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RFR+   +   + +++   +   G   ++V       +    +   T     A
Sbjct: 302 HPTKIEVRFRDGRAVHQAVQRALVDTLA--GTRAAAVPEPSPEPAAAGPDIADTPAAAVA 359

Query: 360 TS 361
             
Sbjct: 360 PP 361


>gi|289450496|ref|YP_003475197.1| DNA mismatch repair protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185043|gb|ADC91468.1| DNA mismatch repair protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 677

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 199/390 (51%), Gaps = 9/390 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L  +  N IAAGE++ERP+  +KEL EN+LDA +  ++  I  GG S+ Q+ D+G 
Sbjct: 3   KIKVLDVQTANSIAAGEVVERPASVVKELCENALDAGAGNIKITIKNGGNSYLQVLDDGC 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT E+  +A   H TSK+S   D  N+ T GFRGEAL SI AV+ + L++R     +  
Sbjct: 63  GMTGEDAKLAFLPHATSKLSVISDLDNLDTMGFRGEALASIAAVAKVNLITRTADAPSAV 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K S + PV    GT + V DLFF  PAR  FLK +  E N I D+++++A+A 
Sbjct: 123 TLQVDGGKWSEITPVGAPIGTCITVEDLFFNTPARFKFLKKDSTELNKIIDIVQKLALAR 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE----KSNEITLQG 235
           P VSF  ST +     +     N + P  +  + G+   +  + L E     ++ + + G
Sbjct: 183 PDVSFLLSTPERI---LLHTPGNNDLPSVVFSLFGKQTASELIALPELDMADNSPVKVSG 239

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
             G P   R +     VF+N R V D  +   I  AY + +  G+YPVV++ L + P  V
Sbjct: 240 LIGQPGAARSSRASQLVFVNNRPVHDIAVTKAIDEAYRDRLMKGKYPVVIIKLNLPPYLV 299

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           D+NVHP KS +RF N   + N +  +I+ A+ +  +       +    S  ++N   T L
Sbjct: 300 DINVHPQKSEVRFWNSGTVFNSVYHTIKSALAEDVLPPGDWSDRTKPESAGKENRGGTTL 359

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           P    S    +       N+   N  L   
Sbjct: 360 PDSIDSCVAQRPAANYPVNKSFENVALNEP 389



 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 4/188 (2%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q+   YII    + L +VDQHAAHE+++FE+  Q  N  ++     L P  I L   +
Sbjct: 489 VGQVFNTYIILADHEELWLVDQHAAHEKVLFERFMQQLNEREL-RLQTLIPVPIRLNLDD 547

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             + +    DL  LG + + F   ++ +R +PA L   N  +    ++D + D       
Sbjct: 548 KRMALNFRNDLADLGYEFDEFDGESLILRTVPACLLTNNPTEAFEAVLDYLRDEVKPNDK 607

Query: 530 QDRIENI---LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
                 +   +AT+AC  +I+    +   E+  LL+E+        C HGRP  I+L   
Sbjct: 608 TWPEHQLYGFIATVACKAAIKGNDPLTEDEIKTLLQELAALKQPYNCPHGRPVIIRLSKQ 667

Query: 587 DIEKLFGR 594
           ++EK F R
Sbjct: 668 ELEKRFKR 675


>gi|295105665|emb|CBL03209.1| DNA mismatch repair protein MutL [Faecalibacterium prausnitzii
           SL3/3]
          Length = 713

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 12/370 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +     IAAGE++ERP+  +KEL+ENS+DA +++V   I  GG    +I+DNG G
Sbjct: 4   IHVLDKHTAELIAAGEVVERPASVVKELLENSIDAGATQVTVSIESGGVKLIEISDNGTG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +E IP A  RH TSKI   DD ++IHT GFRGEAL SI +V+ + L++R   +     
Sbjct: 64  IDAEYIPTAFIRHATSKIEKPDDLNSIHTLGFRGEALASIASVARVELLTRTEVDEFATC 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             ISG +     P A   GT + V+DLF+  PAR+ FLK +  E   + D +  +A+++P
Sbjct: 124 YRISGGEEQGREPAARAVGTTIRVQDLFYNTPARMKFLKKDSSEGTFVADNVGHVALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VS  F      +Y       +G        V+G +F  + +E++ +     + G    P
Sbjct: 184 EVSVKFIREGKLQYV---TPGDGQLRSAAYAVLGREFSRDLIEVHFEEGLYRVTGLITPP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + +INGR V+++ I++ +  A+  T   G++P  +LLLE+    VDVNVH
Sbjct: 241 KSCRASRSMQHFYINGRYVRNRTIMAGMEMAFKGTTMQGKFPGGILLLEMPTDLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK   RF     + + +  +++ A+ + G         +   +F  D   KT       
Sbjct: 301 PAKIEARFARENDVFDVVYHAVKLALAQPGT-------GERRFTFEADEKEKTEKENDTQ 353

Query: 361 SLTNTQEKLF 370
           S    +   F
Sbjct: 354 SENAVKNNHF 363



 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 4/285 (1%)

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKL 369
             I+   +     +  +   + T+    +   +    D  P+T                +
Sbjct: 430 EDILDPVVTLHSPEKADATKVQTAPQPFRAAAAETQLDVRPETDAAADPPLDHMAAWNTV 489

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                  +       ++P  SE  + +        +      ++ + YI+++  D L ++
Sbjct: 490 PAAPEIEAATVPYQPEEPVQSEQPEQLGFDVPQGEEPLRYVGEVFRTYILAERGDELCLI 549

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           D+HAAHER ++EK+  ++ +  + SQ LL P  IDL   E   ++E+   L   G+    
Sbjct: 550 DKHAAHERQLYEKLAANYGN--VPSQLLLQPAAIDLSAEEKQALLENQPLLENAGLDVAD 607

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG + + +R +PA +  +N   LL +I D ++   +   L +  E +L +++C  +I++G
Sbjct: 608 FGGSTVLLRAVPADVEPQNAEDLLVEIADRLL-KGSRDALNEHTEWVLHSISCRAAIKAG 666

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            K    E+  L  ++        C HGRP  +KL   ++EK FGR
Sbjct: 667 DKSSPQELMALAEKILSGEVPPFCPHGRPCVLKLTRKELEKQFGR 711


>gi|227872343|ref|ZP_03990696.1| possible DNA mismatch repair protein MutL [Oribacterium sinus
           F0268]
 gi|227841807|gb|EEJ52084.1| possible DNA mismatch repair protein MutL [Oribacterium sinus
           F0268]
          Length = 712

 Score =  326 bits (836), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 126/407 (30%), Positives = 212/407 (52%), Gaps = 16/407 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI  LS++ INQIAAGE++ERPS  +KEL+EN+LDA+++ +   I GGG SF +++DNG
Sbjct: 1   MKIHLLSQECINQIAAGEVVERPSSIVKELVENALDAKATAISIEIKGGGISFLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ SE++  A   H TSKI +  D   I +FGFRGEAL SI +V+ +  +S+  ++   
Sbjct: 61  EGIFSEDLERAFMPHATSKIQNPKDLEEILSFGFRGEALASIASVAKVECISKRQEDFLA 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I + G   S +  V    GT + VRDLF+ +PAR  FL SE  E + + +++ ++A+A
Sbjct: 121 HRILVEGGSFSPIEEVGGMDGTSILVRDLFYNVPARKKFLLSESTEASRVEEMVEKLALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-------- 230
            P +SF F     +R++       G   + +  + G+ F  +++E+ E            
Sbjct: 181 NPGISFHFVKDGKSRFQTL---GGGKLSDVVFGIYGKSFAKDSLEIRESYYPSSLTGLAT 237

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           + ++G  G P+  R N      F+NGR V+D  +   +  AY   +   ++P  ++ L +
Sbjct: 238 LHIEGLLGKPSLTRSNRQYEIFFVNGRFVRDSLLSRALEDAYKPFLMQHKFPFAIVFLHL 297

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---KGISTSSVLSKKMISSFHQ 347
            P  VDVNVHP K  +RF+N   I   +   + K ++K      S  S+  K+       
Sbjct: 298 SPSLVDVNVHPQKLEVRFQNREKIYQALFDCVSKTLSKADLIDHSPLSLFQKEKEEKSTA 357

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
             +P + L +        +  +  +  R   ND   ++  +  ++ +
Sbjct: 358 FLSPSSQLWEKKEEKKENKNDIPEEAVRSDQNDKQSAEQISTIKEQE 404



 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 5/235 (2%)

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            ++   +  +  +E   S ++ LPS +           E     +       Q+ Q Y +
Sbjct: 481 NTVPKEENTVPKEEQLFSESEDLPSAEQESLFSPSFFSEEGEREF---RLIGQVFQTYWL 537

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +    L I+DQHAAHE++ FEKMR+++      SQ +L    +     E  L  +  + 
Sbjct: 538 IEFQKELFIMDQHAAHEKVNFEKMRKNYLKKPGISQGILPK-TMVFSAKEEELYEKTKDY 596

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
              LG +  +      A+  IPA     +   L  +I+D + +       +   + I A+
Sbjct: 597 FTHLGYRIRKEEEKRYALEGIPADFPSLDAEMLFHEILDALAEEGNLSEAESVYDKI-AS 655

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MAC  S++  + +   E   L++++    N   C HGRPT +  K  D+EK+F R
Sbjct: 656 MACKASVKGNQLLSFKEAEALVQKLFTLENPYACPHGRPTIVAFKKQDLEKMFKR 710


>gi|303326191|ref|ZP_07356634.1| DNA mismatch repair protein MutL [Desulfovibrio sp. 3_1_syn3]
 gi|302864107|gb|EFL87038.1| DNA mismatch repair protein MutL [Desulfovibrio sp. 3_1_syn3]
          Length = 675

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 216/446 (48%), Gaps = 14/446 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  +  GG++  ++ D+
Sbjct: 5   MRHIRLLPPELRNQIAAGEVVERPASVLKELVENSLDAGAARIDVRLDNGGQALIRVQDD 64

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR---PPQ 114
           G G+ ++E+ ++V RH TSKI+  DD   I ++GFRGEALPSI +VS   ++S    P  
Sbjct: 65  GCGIPADELELSVTRHATSKIASMDDLERIRSYGFRGEALPSIASVSRFRIVSAWQGPDN 124

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
            +    + +   ++ +  P A++ GTIVEVRDLF  IPARL FLK+   E     D + R
Sbjct: 125 QSAAHCVEVEHGRLLASSPAALHKGTIVEVRDLFSNIPARLKFLKTPATEFKRAQDWLAR 184

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+A  +V F+  +                  +R++ +     +        + + I + 
Sbjct: 185 LALARAEVGFSLHSGDREALHFL---PGQTLRDRLALLWPRLIVEALRPFEGERHGIRVH 241

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G   +PT ++   ++  +F+N R+V DK +L+ +R AY   +    YP V L +++DP +
Sbjct: 242 GLAALPTVSQPRGDRILLFVNNRSVLDKRLLAAVREAYKGRLTSRDYPQVALFVDMDPCE 301

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-----TSSVLSKKMISSFHQDN 349
           VDVNVHPAKS +RFR+ + + +  + ++Q A+     +          +  + +      
Sbjct: 302 VDVNVHPAKSEVRFRDESAVFSACLHAVQGALVTSFTAALEGEAPDAAAPDLFTEGPSSG 361

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
            P    P                         L         +   V ++    +++ + 
Sbjct: 362 QPGGLFPARENPAGTASASEAAAPRPQGFWGRLDDPPLLARPETSSVPDAPEEDWRVSVP 421

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAH 435
             +     I +   +        A H
Sbjct: 422 PGRSAAPRIFAPVEEDAAPYGPPAEH 447



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/299 (20%), Positives = 112/299 (37%), Gaps = 17/299 (5%)

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAPKTHLPKYA 359
           P   + R  +P ++      S+  A  +    +           F   +     + P   
Sbjct: 387 PQGFWGRLDDPPLLARPETSSVPDAPEEDWRVSVPPGRSAAPRIFAPVEEDAAPYGPPAE 446

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLGIACAQIHQN 416
            S               + + L+P              E    E           Q+   
Sbjct: 447 HSFPPECAGASASMPDAAWSGLVPEPAVASDASFAAAPEPREREPLRVGPLSYLGQVADT 506

Query: 417 YIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
           Y+I +  +G L+++DQHAAHER+++ ++R+   +       L  P  + L   E     +
Sbjct: 507 YLILRDAEGALLLLDQHAAHERVLYTRLRRGGFAGTGQCLAL--PLELGLHPAELERFQQ 564

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
             E L  LG   E      + +R +P +LS+      LR+ +            +D +  
Sbjct: 565 LRERLESLGFALE-CADGTLLVRAMPPVLSRAEARDFLREALS---------GRKDDLAG 614

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +  +M+C G+I++G+++   E   LLR+    P    C HGRP  ++   + +EK F R
Sbjct: 615 MFISMSCKGAIKAGQRLTDDEAAGLLRQWLAVPEREYCPHGRPCVLRWDAAALEKFFKR 673


>gi|58697014|ref|ZP_00372486.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536731|gb|EAL59997.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 406

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 222/404 (54%), Gaps = 6/404 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA S  +E  I  GG++   +TD+G
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSLEIEIKIESGGRNLIIVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+   ++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+  + +   
Sbjct: 61  NGVEKNDLELAFMRHATSKLSDSELIEIKHLGFRGEALPSIAAVSRIKLSSKAREASEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I+   GEKI    P +++ GT +EVRDLFF  P RL FLK+E+ ET  I D++  +A+ 
Sbjct: 121 SISYEGGEKIGEQTPYSLSQGTHIEVRDLFFATPNRLKFLKTERAETQSIVDIVNNLAMI 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + FT ++      K+   +   +   R+ +V  E+F  +++E+NE+ + I L G+  
Sbjct: 181 NYHIGFTLTSGNK---KLLKYAKQTSLFHRLCEV-EEEFQGSSLEINEEEDGIKLTGHIC 236

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT NRG + Q Y F+NGR ++D  ++  +R AY + IP  RYP   L LEI   QVDVN
Sbjct: 237 KPTVNRGKSTQIYTFVNGRPIKDNLLIGAVRYAYHDFIPSDRYPFAALHLEIPYDQVDVN 296

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP KS +RF+N  +I   + + + KA++++  +  +   K   +     + P     + 
Sbjct: 297 VHPNKSEVRFQNKKLIYEIMTRGLIKALSRRIGTFPAHDQKMDSTLPDPFDKPDVQNERR 356

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            +   N   K F   N  +      S    Y+       ++EA 
Sbjct: 357 PSPFENQLIKEFASPNEKAKGLSEQSKSFDYTGIQKFPAQAEAM 400


>gi|289580965|ref|YP_003479431.1| DNA mismatch repair protein MutL [Natrialba magadii ATCC 43099]
 gi|289530518|gb|ADD04869.1| DNA mismatch repair protein MutL [Natrialba magadii ATCC 43099]
          Length = 765

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 124/390 (31%), Positives = 194/390 (49%), Gaps = 14/390 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E  + +IAAGE++ERP+ A+KEL+ENSLDA +S ++  +  GG    ++ D+G G
Sbjct: 13  IHQLDEDTVARIAAGEVVERPASAVKELVENSLDAGASSIDVTVEAGGTDLVRVADDGHG 72

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNTG 118
           MT  ++  AV++H TSKIS  DD  + + T GFRGEAL +IG+VS LT+ SRP   +  G
Sbjct: 73  MTEADLRAAVRQHTTSKISGLDDLESGVATLGFRGEALHTIGSVSRLTIQSRPQDGDGAG 132

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++   G  + SV P     GT VEV DLF+  PAR  FLK+   E   +  V+ R A+A
Sbjct: 133 TELVYEGGTVESVSPTGCPAGTTVEVADLFYNTPARRKFLKTTATEFAHVNRVVTRYALA 192

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT------ 232
            P+V+ + +      +     +  G+    +  V G +  +  + ++    E+       
Sbjct: 193 NPEVAVSLTHDGREVF---STTGQGDLQAAVLAVYGREVASAMIPVDADGEELPPGPLES 249

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G    P  NR +      ++N R V    +   I  AY   +   RYP VVL  E+  
Sbjct: 250 VAGLVSHPETNRASREYLATYVNDRAVTSDALREGIMGAYGTQLGGDRYPFVVLFHEVPG 309

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
             VDVNVHP K  +RF +   +R  +  +++ A+ + G+  S     +      Q    +
Sbjct: 310 DAVDVNVHPRKREVRFDDDDAVRRQVDSAVESALLEHGLLRSRAPRGRSAPGEAQVTPTQ 369

Query: 353 THLPKYATSLTNTQ-EKLFLQENRLSTNDL 381
             L + + + T T   +    E   S  D 
Sbjct: 370 EELAERSGAGTETSAAEPSAAEPSTSEGDA 399



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 100/265 (37%), Gaps = 4/265 (1%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                  +  +       PK +    A S   T      ++     +             
Sbjct: 495 PDPDTDTETNTDTDSAPDPKPNPESAAASSMETPGATETKDGNSKFDATTEQRTLAGDAA 554

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
                + E           Q+   Y++ +T DGL ++DQHAA ER+ +E++R  F+    
Sbjct: 555 TGGDYDHEFDSLPPLRVLGQLSDTYLVCETDDGLALIDQHAADERVNYERLRTAFDEDSS 614

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
                     ++L   E      + + L +LG  A+R     +A+  +PA+  K   P+ 
Sbjct: 615 AQALASP-VELELTAAEAEAFAAYRDALAQLGFYADRVDDRTVAVTTVPAVFEKTLDPEQ 673

Query: 513 LRDIIDEIIDSS---TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
           LRD++   ++        T+    +  +  +ACY SI     +    +  LL  ++   N
Sbjct: 674 LRDVLVSFVEGDREAGAETVDALADEFIGDLACYPSITGNTSLTEGSVVDLLAALDDCEN 733

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRP  ++   ++IE  F R
Sbjct: 734 PYACPHGRPVVVQFDEAEIEDRFER 758


>gi|15835478|ref|NP_297237.1| DNA mismatch repair protein [Chlamydia muridarum Nigg]
 gi|270285658|ref|ZP_06195052.1| DNA mismatch repair protein [Chlamydia muridarum Nigg]
 gi|270289667|ref|ZP_06195969.1| DNA mismatch repair protein [Chlamydia muridarum Weiss]
 gi|301337054|ref|ZP_07225256.1| DNA mismatch repair protein [Chlamydia muridarum MopnTet14]
 gi|14194944|sp|Q9PJG5|MUTL_CHLMU RecName: Full=DNA mismatch repair protein mutL
 gi|7190890|gb|AAF39660.1| DNA mismatch repair protein MutL [Chlamydia muridarum Nigg]
          Length = 576

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 138/520 (26%), Positives = 250/520 (48%), Gaps = 14/520 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L    +NQIAAGE+IE  +  +KELIEN+LDA +  +     GGGK    + DNG 
Sbjct: 7   RIRLLDSATVNQIAAGEVIENAASVVKELIENALDAGADEISIETLGGGKGQIVVRDNGI 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM ++E+ +A+QRH TSKIS   D  ++ +FGFRGEALP+I ++S + + +    N  G+
Sbjct: 67  GMDADEVAVAIQRHATSKISHFADIFSLASFGFRGEALPAIASISKMEIHT-AKVNGLGS 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +  I   +          PGT + V  LF+ +P R +F KS Q++   I  ++    ++ 
Sbjct: 126 KTLIEKGEPVCCEACPRQPGTTISVNSLFYNVPMRQSFQKSPQMDRLAIRRLLENSILST 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + +T+ + +     +   + N  F ER++ V+GE F+N A  ++++ NE+ L G+ G 
Sbjct: 186 EGIKWTWISERRQELNI---AKNQGFTERVALVMGEAFVNEAFLIDKRQNELHLTGFLGS 242

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+ +R       +FIN R V+  FI   +  AYA  +P  RYP  VL L + P   D NV
Sbjct: 243 PSMHRSTRQGQRLFINNRAVESSFISRKVAEAYAWMLPAQRYPAFVLKLSVPPMWCDFNV 302

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K+ +R      I   ++++I + +    +  S  L +KM+    +    +    +  
Sbjct: 303 HPQKTEVRLLQEGQIGALLVEAISEVL----LHRSPSLEEKMVEPTMESPLIENGGLEIP 358

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           +             N L  + +    +    ++ + +        +   +  ++    I+
Sbjct: 359 SIRPVAISTPLSCPNFLQQSFVETEANRALCKEQENLALPIIERVRFLASLGKV----IL 414

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            + ++G+  +   AA + L +  +    + + +  Q  L P  + + + E   +    E 
Sbjct: 415 VEDSEGVHALFVQAARKHLFYISLLSKRSDSLLACQMFLVPPTVQMTKLEADFLQTRLES 474

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           L   GI+  R  P++ AI   P  + ++ + + +  +  E
Sbjct: 475 LAAQGIELCRISPDSFAIESAPPFIQEEELKEWIISLAHE 514


>gi|15642797|ref|NP_227838.1| DNA mismatch repair protein [Thermotoga maritima MSB8]
 gi|4980506|gb|AAD35116.1|AE001690_10 DNA mismatch repair protein [Thermotoga maritima MSB8]
          Length = 516

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 149/595 (25%), Positives = 257/595 (43%), Gaps = 88/595 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L E ++ +IAAGE+I  PS  +KEL+ENSLDA++ R+   I  GGK+  +++DNG 
Sbjct: 8   RIKRLPESLVRKIAAGEVIHNPSFVLKELVENSLDAQADRIVVEIENGGKNMVRVSDNGI 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT EE  +A++ + TSKI   +D   I T+GFRGEAL SI  VS   ++++  ++    
Sbjct: 68  GMTREEALLAIEPYTTSKIESEEDLHRIRTYGFRGEALASIVQVSRAKIVTKTEKDALAT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ I+G K+  +     + GT VEVRDLFF +P R   LKS  +E  +  ++  R  +  
Sbjct: 128 QLMIAGGKVEEISETHRDTGTTVEVRDLFFNLPVRRKSLKSSAIELRMCREMFERFVLVR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F F++       ++      N  ER + +I ED     +   E+ + + ++G    
Sbjct: 188 NDVDFVFTSDGKI---VHSFPRTQNIFER-ALLILEDLRKGYITFEEELSGLRIKGIVSS 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R +    Y ++NGR V  + +   +   Y   +P   YPV VL +E+         
Sbjct: 244 REVTRSSRTGEYFYVNGRFVVSEELHEVLMKVYD--LPKRSYPVAVLFIEV--------- 292

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           +P +  +      I+  F+                           +++   K+      
Sbjct: 293 NPEELDVNIHPSKIVVKFL---------------------------NEEKVKKSLEETLK 325

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +L     +    E                S     V E+ +  +        +   Y +
Sbjct: 326 RNLARKWYRSVAYEE--------------ISSRALSVAEAPSHRW------FLVKGKYAV 365

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +  DGL+ VD HA HER I+E++    +  K   +  +T            L  E  + 
Sbjct: 366 VEVEDGLLFVDLHALHERTIYEEILSKKSWGKRRVKRNIT----------VVLSREEKQK 415

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L   G   +     A+ + EIP  L++  + +  RD             + ++++  +A 
Sbjct: 416 LEEYGFSFQGE-EGALKVIEIPEFLTEDVVEEFFRDF-----------PVDEKLKERIAL 463

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  + +SG      E+   L ++       +C HGRP   K+   D+++ F R
Sbjct: 464 AACKLATKSGEF--DEEIASKLLDVFFKKRFERCPHGRPISFKISYEDMDRFFER 516


>gi|167750507|ref|ZP_02422634.1| hypothetical protein EUBSIR_01483 [Eubacterium siraeum DSM 15702]
 gi|167656433|gb|EDS00563.1| hypothetical protein EUBSIR_01483 [Eubacterium siraeum DSM 15702]
          Length = 677

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 114/329 (34%), Positives = 180/329 (54%), Gaps = 6/329 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR L + +   IAAGE+IERPS  IKEL+ENS+DA +  +   I  GG S+ +ITD+
Sbjct: 1   MPEIRLLDKSVAELIAAGEVIERPSSVIKELVENSIDAGARHITVEIKHGGISYMRITDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P A  RH TSKI   DD + I T GFRGEAL S+ AV+ + +MSR   +  
Sbjct: 61  GCGIAYAQMPTAFLRHATSKIRTGDDLTGIMTMGFRGEALASVAAVAKIEMMSRQDGDEL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G +           GT + +++LF+  PARL FLK +  E N I   + R+A+
Sbjct: 121 GGRYIIEGGEEKEHESCGCPTGTTIVIKELFYNTPARLKFLKKDISEGNFIAATVDRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F         +   S +G+       V G  F ++ + ++   N I + GY 
Sbjct: 181 SHPDISFRFIRDNK---SVRMTSGDGSLLSAAKAVSGRQFADSLIPVDFSLNGIDVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R + +    F+N R ++    ++ +  AY  ++ +G++P  +L + + P  VDV
Sbjct: 238 SSPLFCRNSRSMQTFFVNTRYIKSTTCMAALEEAYRNSMMVGKFPACILNISLSPETVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHPAK+ IRF     + + +  +++ A+
Sbjct: 298 NVHPAKTEIRFAYEKPVFDAVYFAVKNAL 326



 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 109/250 (43%), Gaps = 8/250 (3%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHY 404
               + H+P Y    ++    +    + +        +   +        E         
Sbjct: 432 PLPKEPHIPSYKAVSSSVVVTVDDDTDDIPVTAPQTDEGFRFINAKPITVERIDEPKPEK 491

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  +  + YI+ +  + L+I+D+HAAHER+ FEK++++F +   TSQ L+    + 
Sbjct: 492 TSVRVIGEFLKTYILCEADEELIIIDKHAAHERIRFEKLKEEFVT---TSQLLIDKTELK 548

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   + E+ E + + GI+      + + I  +P+++ K +  +++ D+   +++++
Sbjct: 549 LSPEEYEALHEYYEYVEQSGIELVFCDDSTVQITAMPSVV-KCSPQEIVSDVAQRLMNTA 607

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           T        +++L TMAC  +I++      +E+  L   +  +     C HGRP    L 
Sbjct: 608 TDQK-GALFDDMLHTMACKSAIKAHDDTDILELQALADRVMNDRTIRFCPHGRPVMTALS 666

Query: 585 LSDIEKLFGR 594
              IE+ F R
Sbjct: 667 KYRIERFFNR 676


>gi|160945082|ref|ZP_02092308.1| hypothetical protein FAEPRAM212_02601 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442813|gb|EDP19818.1| hypothetical protein FAEPRAM212_02601 [Faecalibacterium prausnitzii
           M21/2]
          Length = 713

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 113/330 (34%), Positives = 181/330 (54%), Gaps = 5/330 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +     IAAGE++ERP+  +KEL+ENS+DA +++V   I  GG    +I+DNG G
Sbjct: 4   IHVLDKHTAELIAAGEVVERPASVVKELLENSIDAGATQVTVSIESGGVKLIEISDNGTG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +E IP A  RH TSKI   DD ++IHT GFRGEAL SI +V+ + L++R   +     
Sbjct: 64  IDAEYIPTAFIRHATSKIEKPDDLNSIHTLGFRGEALASIASVARVELLTRTEVDEFATC 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I+G +     P A   GT + V+DLF+  PAR+ FLK +  E   + D +  +A+++P
Sbjct: 124 YRIAGGEEQGREPAARAVGTTIRVQDLFYNTPARMKFLKKDSSEGTFVADNVGHVALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VS  F      +Y       +G        V+G +F  + +E+  +     + G    P
Sbjct: 184 EVSVKFIREGKLQYV---TPGDGQLRSAAYAVLGREFSRDLIEVQSEEGLYRVTGLITPP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + +INGR V+++ I++ +  A+  T   G++P  +LLLE+    VDVNVH
Sbjct: 241 KSCRASRSMQHFYINGRYVRNRTIMAGMEMAFKGTTMQGKFPGGILLLEMPTDLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           PAK   RF     + + +  +++ A+ + G
Sbjct: 301 PAKIEARFARENDVFDVVYHAVKLALAQPG 330



 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 124/285 (43%), Gaps = 4/285 (1%)

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH-LPKYATSLTNTQEKL 369
             I+   +     +  +   + T+    +   +    D  P+T                +
Sbjct: 430 EDILDPVVTLHSPEKADATKVQTAPQPFRAAAAETQLDVRPETDATADPLLDHMAAWNTV 489

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
                  +       ++P  SE  + +        +      ++ + YI+++  D L ++
Sbjct: 490 PAAPEIEAATVPYQPEEPVQSEQPEQLGFDVPQGEEPLRYVGEVFRTYILAERGDELCLI 549

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           D+HAAHER ++EK+  ++ +  + SQ LL P  IDL   E   ++E+   L   G+    
Sbjct: 550 DKHAAHERQLYEKLAANYGN--VPSQLLLQPAAIDLSAEEKQALLENQPLLENAGLDVAD 607

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSG 549
           FG + + +R +PA +  +N   LL +I D ++   +   L +  E +L +++C  +I++G
Sbjct: 608 FGGSTVLLRAVPADVEPQNAEDLLVEIADRLL-KGSRDALNEHTEWVLHSISCRAAIKAG 666

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            K    E+  L  ++        C HGRP  +KL   ++EK FGR
Sbjct: 667 DKSSPQELMALAEKILSGEVPPFCPHGRPCVLKLTRKELEKQFGR 711


>gi|291557074|emb|CBL34191.1| DNA mismatch repair protein MutL [Eubacterium siraeum V10Sc8a]
          Length = 677

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 114/329 (34%), Positives = 180/329 (54%), Gaps = 6/329 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  IR L + +   IAAGE+IERPS  IKEL+ENS+DA +  +   I  GG S+ +ITD+
Sbjct: 1   MPEIRLLDKSVAELIAAGEVIERPSSVIKELVENSIDAGARHITVEIKHGGISYMRITDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P A  RH TSKI   DD + I T GFRGEAL S+ AV+ + +MSR   +  
Sbjct: 61  GCGIAYAQMPTAFLRHATSKIRTGDDLTGIMTMGFRGEALASVAAVAKIEMMSRQDGDEL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G +  I G +           GT + +++LF+  PARL FLK +  E N I   + R+A+
Sbjct: 121 GGRYIIEGGEEKEHESCGCPTGTTIVIKELFYNTPARLKFLKKDISEGNFIAATVDRLAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P +SF F         +   S +G+       V G  F ++ + ++   N I + GY 
Sbjct: 181 SHPDISFRFIRDNK---SVRMTSGDGSLLSAAKAVSGRQFADSLIPVDFSLNGIDVSGYV 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P F R + +    F+N R ++    ++ +  AY  ++ +G++P  +L + + P  VDV
Sbjct: 238 SSPLFCRNSRSMQTFFVNTRYIKSTTCMAALEEAYRNSMMVGKFPACILNISLSPETVDV 297

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHPAK+ IRF     + + +  +++ A+
Sbjct: 298 NVHPAKTEIRFAYEKPVFDAVYFAVKNAL 326



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 8/250 (3%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE---SEATHY 404
               + H+P Y    ++    +    + +        +   +   N    E         
Sbjct: 432 PLPKEPHIPSYKAVSSSVVVTVDDDTDDIHVTAPQTDEGFRFINANPVTVERIDEPKPEK 491

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  +  + YI+ +  + L+I+D+HAAHER+ FEK++++F +   TSQ L+    + 
Sbjct: 492 TSVRVIGEFLKTYILCEAGEELIIIDKHAAHERIRFEKLKEEFVT---TSQLLIDKTELK 548

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   + E+ E + + GI+      + + I  +P+++ K +  +++ D+   +++++
Sbjct: 549 LSPEEYEALHEYYEYVEQSGIELVFCDDSTVQITAMPSVV-KCSPQEIVSDVAQRLMNTA 607

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           T        +++L TMAC  +I++      +E+  L   +  +     C HGRP    L 
Sbjct: 608 TDQK-GALFDDMLHTMACKSAIKAHDDTDILELQALADRVMNDRTIRFCPHGRPVMTALS 666

Query: 585 LSDIEKLFGR 594
              IE+ F R
Sbjct: 667 KYRIERFFNR 676


>gi|313114065|ref|ZP_07799617.1| DNA mismatch repair protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310623474|gb|EFQ06877.1| DNA mismatch repair protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 713

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/330 (34%), Positives = 181/330 (54%), Gaps = 5/330 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +     IAAGE++ERP+  +KEL+ENS+DA +++V   I  GG    +I+DNG G
Sbjct: 4   IHVLDKHTAELIAAGEVVERPASVVKELLENSIDAGATQVTVSIESGGVKLIEISDNGTG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +E I  A  RH TSKI   DD +NIHT GFRGEAL SI +V+ + L +R   +     
Sbjct: 64  IEAEYISTAFIRHATSKIETPDDLTNIHTLGFRGEALASIASVARVELTTRTEVDEFATV 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  S  P A   GT + V+DLF+  PAR+ FLK +  E   ++D +  +A+++P
Sbjct: 124 YRIEGGEEVSREPGARAVGTTIRVKDLFYNTPARMKFLKKDSSEGTFVSDTVTHVALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VS  F      +Y       +G        V+G +F  + +EL  +     + G    P
Sbjct: 184 EVSVKFIREGKLQYV---TPGDGQLRGAAYAVLGREFSRDLIELKNQEGVYRITGLVTPP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + +INGR V+++ +++ +  A+  T+  G++P  +LLLE+    VDVNVH
Sbjct: 241 KSCRASRSMQHFYINGRYVRNRTMMAGMEMAFKGTMMQGKFPGGILLLEMPADLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           PAK   RF     + + +  +++ A+ + G
Sbjct: 301 PAKIEARFARENDVFDVVYHAVKLALAQPG 330



 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/294 (23%), Positives = 132/294 (44%), Gaps = 11/294 (3%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP-KTHLPKYATSLTNTQE 367
           +N  ++  F+     K    K        + +       +    K H P+   +  N  +
Sbjct: 421 QNEDMLDPFVTLHSPKLETTKAPEPFRAAANEAQLDVEPEFGETKLHSPQDHMAAWNPAQ 480

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL-------GIACAQIHQNYIIS 420
           +   +E   +       D P  +E    + E E  ++              ++ + YI++
Sbjct: 481 EAPKEEPESAPCVETEPDAPEAAEQETVLAEPEQMNFDPTADQPEPLRYVGEVFRTYILA 540

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +  D L ++D+HAAHER ++EK+  ++ +  + SQ LL P  IDL   E   ++++   L
Sbjct: 541 ERGDELCLIDKHAAHERQLYEKLAANYGN--VPSQMLLEPAAIDLAAEEKQALLDNIPLL 598

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
              G++   FG N + +R +PA +  +N   LL +I ++++       L +  E +L ++
Sbjct: 599 ENAGLEIADFGGNTVVLRAVPADVEPQNAESLLVEIANKLL-KGGHDALNEHTEWVLHSI 657

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +C  +I++G K    E+  L  ++        C HGRP  +KL   ++EK FGR
Sbjct: 658 SCRAAIKAGDKSSPQELLALAEKILSGEVPPFCPHGRPCVLKLTRKELEKQFGR 711


>gi|148285056|ref|YP_001249146.1| DNA mismatch repair protein [Orientia tsutsugamushi str. Boryong]
 gi|146740495|emb|CAM81051.1| DNA mismatch repair protein [Orientia tsutsugamushi str. Boryong]
          Length = 680

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/426 (31%), Positives = 241/426 (56%), Gaps = 9/426 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS+  IN+IAAGE++ERP+  +KEL+ENS+D+ + +V+  +   GK+   ++DNG G
Sbjct: 4   IKYLSDTTINRIAAGEVVERPASVVKELVENSIDSGAMKVDITLEKSGKNLIIVSDNGCG 63

Query: 63  MTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           M++E++  A++RH TSK+++ D  NI+TFGFRGEALPSI +VS + ++++   ++   +I
Sbjct: 64  MSAEDLETAIERHTTSKLNENDIMNINTFGFRGEALPSIASVSRMRIVTKSKLHDQAHEI 123

Query: 122 AIS--GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +    +   +  P     GT +EVRDLFF  PARL FL+S++ E  +  DV++R+AI+Y
Sbjct: 124 NVHGGVKTKINSLPQLQLTGTKIEVRDLFFATPARLKFLRSDRTEYIVCYDVVKRLAISY 183

Query: 180 PKVSFTFSTIKSNRYKMNFQ---STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           P ++F+         K+      S +     RIS+++ ++FI+NA+ +  + +E+++ G+
Sbjct: 184 PHIAFSLVHDDKTILKLKANAQLSFDDARKSRISEILSKNFIDNAISIGIERDELSITGF 243

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PT+N+ +A    +F+N R V+DK +++ IR AY   +   RYP+VV+ + + P  +D
Sbjct: 244 VSVPTYNKASAEDQLLFVNNRPVKDKLLMTAIRLAYQGVLARERYPIVVIFISVAPHFID 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP KS +RF + +++R  II +I++A+       SSV +                  
Sbjct: 304 VNVHPTKSEVRFHDSSLVRGIIISAIKQALLNTSQLVSSVAASDANKYMKPQYDTGISEK 363

Query: 357 KYATSLTNTQEKLFLQE---NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
              +      ++  LQE   N     ++         + N+ V ++E    +  I   + 
Sbjct: 364 LELSKDIKNIQQFPLQELVNNFSKDFNVNLKSKFQDVQANNFVSDNEQQKIESTIENIKF 423

Query: 414 HQNYII 419
              +  
Sbjct: 424 FSAFNQ 429



 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 155/288 (53%), Gaps = 3/288 (1%)

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
           N       +  +   + N++    S++ + K  S+F+Q  +        +    +     
Sbjct: 392 NLKSKFQDVQANNFVSDNEQQKIESTIENIKFFSAFNQLGSNTESNQHISILDDDKTTDD 451

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEES--EATHYQLGIACAQIHQNYIISQTTDGLV 427
               N  +   +  +   +  + ND    +  ++    LG+ACAQ H NYI++QT D L+
Sbjct: 452 ITAPNIATNEKVDANKQESVQKLNDSFCNNFGDSYQLPLGLACAQFHGNYILAQTIDSLI 511

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE-GECALIMEHDEDLHRLGIK 486
           IVDQHAAHER+ +E +R  F + +I  Q LL P+++ L +      + +  +++  LG+ 
Sbjct: 512 IVDQHAAHERITYENLRSQFQAGQIIRQRLLMPQVVILPDIVRVEKLCDKMQEILALGMG 571

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            ER G   + + E+PAIL   +I  ++ D+ D ++ +     L D +E IL + +CY SI
Sbjct: 572 FERCGDVQVKVLEMPAILQSVDIEAVVNDVADYLLTTDDHILLADMVEKILQSYSCYHSI 631

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           RSGR +   EMN LLR++E  P S QCNHGRPT+++ +L DIEKLFGR
Sbjct: 632 RSGRILTIAEMNSLLRQIETTPFSGQCNHGRPTYVRFELKDIEKLFGR 679


>gi|317495809|ref|ZP_07954172.1| DNA mismatch repair protein MutL [Gemella moribillum M424]
 gi|316913986|gb|EFV35469.1| DNA mismatch repair protein MutL [Gemella moribillum M424]
          Length = 689

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 112/335 (33%), Positives = 182/335 (54%), Gaps = 6/335 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS ++ N+IAAGE++ERP+  +KEL+ENSLDA S+ ++ +I   G    +I DNG 
Sbjct: 3   KINILSAELSNKIAAGEVVERPASVVKELVENSLDAGSTNIKIIIKEFGIEQIRIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++  A  RH TSKI +  D  +I T GFRGEAL SI +VS +T+ S       G 
Sbjct: 63  GISNDDLERAFLRHATSKIREDYDLFHIKTLGFRGEALASISSVSRVTIKSC-AGEAQGK 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +   K+ S    A   GT + V +LF+  PARL +L++   E   IT+VI + A++Y
Sbjct: 122 MLVLEAGKVISEEYYAPIKGTDLSVENLFYNTPARLKYLRNAHTEQANITNVIYKFALSY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P VSF         +K      +G+  + +S++       N +  +  +++  + GY  +
Sbjct: 182 PNVSFELHVDDKITFKTY---GDGDVHKILSKIYNMSVARNMISFSGNNDDYKVYGYISV 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   +FINGR +++  I ++I  AY   +   RYP+ V+ +++DP  +DVNV
Sbjct: 239 PDETRASKNYINIFINGRYIRNYIIQNSIIDAYGTLLMKNRYPLCVINIDMDPILLDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K  +R      + + I   I + +        
Sbjct: 299 HPTKQEVRLSKEAELISLIKGVISERLANYTYIPQ 333



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 11/303 (3%)

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           D ++H  +  +   N + IR       Q  I+    S   +         +     K   
Sbjct: 392 DNDIHKLQEELNSNNESHIRR-----QQTEISGMESSLPDLSYTARPRENYTKYGDKPTK 446

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND----PVEESEATHYQLGIACA 411
            +    +  ++ +   +  +   ++ +  D+  + E  +      E  E          A
Sbjct: 447 KEIENFMNFSKREEIGEATKEEISNTIVKDNSHFDEIKNLKIVQDESMEVKTLPDLKVLA 506

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           QI + YI+S+  + L ++DQHAA ER  +EK+++DF   K   + +L P + D    E A
Sbjct: 507 QIFKTYILSEADNKLYLIDQHAAAERYNYEKLQRDFIDRKNYKKQMLIPMMFDFSIEEAA 566

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
            I  + E    LGI  E FG N+  +RE P  + +++  ++++ I++++++++   T  +
Sbjct: 567 EIRNNFEKFTELGIDFEEFGDNSYVVREFPGWI-EEDEEEMIKIIVEKVLNNNKI-TFNE 624

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
              + +A  +C  SI++ + +  +EMN+++ ++ K  N   C HGRP   K++  D+EK+
Sbjct: 625 LRNDAIAMASCKMSIKANQILSEVEMNKVISDLYKCKNPFTCPHGRPIITKMEKKDLEKM 684

Query: 592 FGR 594
           F R
Sbjct: 685 FKR 687


>gi|120609987|ref|YP_969665.1| DNA mismatch repair protein MutL [Acidovorax citrulli AAC00-1]
 gi|120588451|gb|ABM31891.1| DNA mismatch repair protein MutL [Acidovorax citrulli AAC00-1]
          Length = 698

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 198/388 (51%), Gaps = 24/388 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA + ++   +  GG     + D+G 
Sbjct: 11  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGARQITVRLLAGGVRLIAVEDDGC 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A++RH TSKI++  D  ++ T GFRGEAL +I +VS + L+SR  +  T  
Sbjct: 71  GIPPEELPVALRRHATSKITNLHDLESVATMGFRGEALAAIASVSEMALLSRTEEQPTAF 130

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++          GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 131 LLDARSGELRPAARAR---GTTVEVKELFFSTPARRKFLKTDATELAHCIEAVRRHALAR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQ---------------STNGNFPERISQVIGEDFINNAVEL 224
           P V F          +                   +       R+S V+GEDF+  ++ +
Sbjct: 188 PDVGFAIWHEGKLVEQWRAALVPPAASADGTVDDAALEEALARRLSDVLGEDFLAESIAV 247

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
             +S  +T+ G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   + PV 
Sbjct: 248 RHRSGPVTVTGRAGLPDAARSRADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGQKQPVY 307

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L + IDP +VDVNVHP K  +RFR+   +   +      A+     +  +         
Sbjct: 308 ALYVAIDPMRVDVNVHPTKIEVRFRDSREVHQAVR----HAVENALAAPRAQALAAAAQG 363

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
             +  AP T  P   T+       L  Q
Sbjct: 364 AAEAGAPATDSPAPPTARVAPPAALPRQ 391



 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/192 (39%), Positives = 115/192 (59%), Gaps = 1/192 (0%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN-STKITSQTLLTPEI 462
           + LG A AQIH  YI+++   G+VIVD HAAHER+++E+++   + S +I SQ LL P  
Sbjct: 505 WPLGRAVAQIHGVYILAENAQGMVIVDMHAAHERIVYERLKAQVDASERIASQPLLIPAT 564

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                 E A    H + L  LG++   F P  +A+R +P  L++ +  +L R ++ E+  
Sbjct: 565 FAATPEEVATAEAHADTLDMLGLEVSPFSPRTLAVRAVPTSLAQGDAVELARSVLAELAA 624

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
              T  +Q     IL TMAC+G++R+ R++   EMN LLR+ME    S QCNHGRPT+ +
Sbjct: 625 HDATTVVQRARNEILGTMACHGAVRAHRRLTLDEMNALLRQMEVTERSDQCNHGRPTWRQ 684

Query: 583 LKLSDIEKLFGR 594
           L + +++ LF R
Sbjct: 685 LSMRELDALFLR 696


>gi|319941732|ref|ZP_08016054.1| DNA mismatch repair protein MutL [Sutterella wadsworthensis
           3_1_45B]
 gi|319804665|gb|EFW01532.1| DNA mismatch repair protein MutL [Sutterella wadsworthensis
           3_1_45B]
          Length = 675

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 12/388 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +LS ++I+QIAAGE+IERP+  +KEL+EN++DA + R+E  I GGG S   ++DNG 
Sbjct: 6   PIAELSSQLISQIAAGEVIERPASVVKELVENAVDAGADRIEVRIDGGGLSRILVSDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   E+P+AV+RH TSK++   D     T GFRGEAL S+ +V+ L + S+        
Sbjct: 66  GIPKAELPLAVKRHATSKVATLADLEAATTLGFRGEALASVDSVAELIIESKAAGAGEAW 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I     + +      M  GT VEV DLF+  PAR  F+KSE  ET  +T  + R+A+A 
Sbjct: 126 RIQRGAVEPAGG----MTGGTRVEVTDLFYKTPARRKFMKSESTETAHVTAQMERIALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+ +F+         ++  +S      +RI  ++ +DF      ++ +S+   L G  G+
Sbjct: 182 PQAAFSLYANGRRAMQLEAESA----EDRIKALMPKDFKEACRPVSAESDGWKLTGLVGL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT +R  A+  Y+F+NGR ++D+ +   +R AYA+ +     P+  L L I P +VD NV
Sbjct: 238 PTISRTRADGQYLFVNGRFIRDRVMNHAVRAAYADVLHGQAQPLYCLFLTIPPEEVDSNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY- 358
           HP K+ +RFR+ + + +FI+ +++ A+       +   +   ++     + P        
Sbjct: 298 HPTKTEVRFRDSSRVHSFILHAVEAALAPPLAQAAGGAAVVPLADASLGSVPARREAALF 357

Query: 359 -ATSLTNTQEKLFLQENRLSTNDLLPSD 385
             +SL   QE +  +      N L  + 
Sbjct: 358 GRSSLAEPQEAIATKVPADHPNALWGAP 385



 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 128/237 (54%), Gaps = 5/237 (2%)

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT 422
            N+  +   +   L    L   +   +     P++        LG A AQ+   YI+++ 
Sbjct: 437 PNSSSEEAPEPKSLEPQKLPQMEQEEHPALFTPLQAQSDGRGFLGRALAQVAGVYILAEN 496

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD--EDL 480
             GLVIVD HAA ER+++E+M++    +K+  Q LL P ++ +   + A   E +  E  
Sbjct: 497 ASGLVIVDMHAAAERVLYERMKRAMAESKLAVQELLMPLVVRVTPAQYAAFEEFEKGEVF 556

Query: 481 HRLGIKAERFGPNAIAIREIPAILSK---KNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             LG+        A+A+R +PA++++     +  LLR+++D++ +   +  +      IL
Sbjct: 557 PALGLICTGADEGAVALRGVPAMIAEAPLGELEALLREVLDDLAEFGASEAMDVLKNRIL 616

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +TMAC+ + R+ RK+   EM+ LLR+MEK   + QCNHGRPT+  L ++D+++LF R
Sbjct: 617 STMACHNAFRANRKLSLPEMDALLRDMEKTERADQCNHGRPTWTTLSMTDLDRLFMR 673


>gi|313127387|ref|YP_004037657.1| DNA mismatch repair protein mutl [Halogeometricum borinquense DSM
           11551]
 gi|312293752|gb|ADQ68212.1| DNA mismatch repair protein MutL [Halogeometricum borinquense DSM
           11551]
          Length = 787

 Score =  322 bits (826), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 117/427 (27%), Positives = 203/427 (47%), Gaps = 20/427 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L ++ IN+IAAGE++ERP+  +KEL+ENSLDA+++R+   +  GG    ++ D+G 
Sbjct: 8   TIRALDDQTINRIAAGEVVERPASVVKELVENSLDADANRISVAVDSGGTEGVRVRDDGV 67

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNT- 117
           GM  E++ MAV+ H TSKISD  D  + + T GFRGEAL +I AVS LT+ S+P   +T 
Sbjct: 68  GMDREDLQMAVEEHTTSKISDINDLESGVGTLGFRGEALHTISAVSRLTVRSKPRGGDTG 127

Query: 118 ----------GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
                     G ++ + G +++ VRP     GT+VEV DLF+  PAR  FLK+   E + 
Sbjct: 128 RGSDAPGNDAGTELRVEGGEVTDVRPAGCPEGTVVEVEDLFYNTPARKKFLKTTATEFDH 187

Query: 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
           +  V+ + A+A P+V+ +        +        G+    +  V G +   +   +  +
Sbjct: 188 VNTVVTQYALANPEVAISLEHDDREVF---ATEGRGSLESTVLSVYGREVAESMTRVEHE 244

Query: 228 SNEIT---LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
            ++     + G    P   R   +    F+N R V  + +   +  AY   +   RYP  
Sbjct: 245 PDDGPVASVTGLVSHPETTRSARDYLSTFVNDRYVTARVLREAVLDAYGGQLATDRYPFA 304

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VL +++ P  VDVNVHP K  +RF + + +++ +  +++ A+ ++G+  SS    +    
Sbjct: 305 VLFVDVPPNTVDVNVHPRKMEVRFDDESGVKSAVESAVESALLEQGLIRSSAPRGRSAPD 364

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             +                + Q       +R  ++  +     + +   +    +     
Sbjct: 365 EVEPAPESPTAEARGGKGHSPQPSQSDGRSRSGSSPTVSDSPRSATSGTESARSTPNAES 424

Query: 405 QLGIACA 411
                  
Sbjct: 425 AHSDRTG 431



 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 4/199 (2%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            E           Q+   YI+++T DG+V++DQHAA ER+ +E+++++     +T+Q L 
Sbjct: 579 PEFDTLPSMRVLGQLLDTYIVAETADGMVLIDQHAADERVNYERLQRELAGD-VTTQALA 637

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  ++L   E AL  E+ + L + G  A R G   + +R +PA+ ++   P+LLRD + 
Sbjct: 638 DPVEMELTAREAALFEEYQDALAQTGFHAGRTGERTVEVRSVPAVFAEALRPELLRDALT 697

Query: 519 EII---DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
             +   +     T+    + +LA +ACY S+     +    +  LL  ++   N   C H
Sbjct: 698 AFVSEGEDGGRETVDAVADELLADLACYPSVTGNTSLTEGSVLDLLSALDDCENPYACPH 757

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRP  I+    +IE  F R
Sbjct: 758 GRPVVIEFDRDEIEDRFER 776


>gi|168334524|ref|ZP_02692685.1| DNA mismatch repair protein MutL [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 773

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 197/362 (54%), Gaps = 7/362 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L    INQIAAGE++ERP+  +KEL+ENS+DA ++ +   I+ GG    +I DNG G
Sbjct: 2   IKLLDPLTINQIAAGEVVERPASVVKELVENSIDAGATVITVEISKGGVELIKIIDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
               EI +A  +H TSKIS   D  ++ T GFRGEAL SI +++ + L S+     TG +
Sbjct: 62  FQLXEIEIAFLKHSTSKISTTSDLEHVLTMGFRGEALSSISSIAKVELTSKNKDXATGRR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +SG  I++   VA + GT   ++DLFF +PAR  FLKS  VE   ITD+I ++A+++P
Sbjct: 122 VTVSGGTITNTMDVAASQGTTFVIQDLFFNVPARKAFLKSAGVEAGRITDIIYKLALSHP 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            ++F +       ++      N N  E I  + G++  +  + +   + +  L+G  G  
Sbjct: 182 NIAFKYIKDSKPIFQTR---GNNNLKEVIFNIFGKEISDGTIPIQYATKDFKLEGRIGKL 238

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
           T ++ N +    FINGR + +K     +  AY       ++PV +L + +    +DVNVH
Sbjct: 239 TLSKSNRSWELFFINGRYITNKIFNEAVEEAYKTLTMAKKFPVAILRVTMPASHLDVNVH 298

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +RF++   I+  II +I++ +++  +      ++ +  S H+  A      K  T
Sbjct: 299 PAKLEVRFKDSDAIKTAIINAIKQTLSEINLMP--TFAEALPKSAHKKPALNIDQAKLVT 356

Query: 361 SL 362
             
Sbjct: 357 PA 358



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 4/185 (2%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             QI + Y + +  D ++I+DQHAAHER+I+EK+  +F+S  + SQ LL P I       
Sbjct: 591 LGQIFETYWMIKYMDKVLIMDQHAAHERVIYEKLLAEFHSNTVDSQQLLCPMIFRPTANT 650

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             LI  H   L + G + E      + IR +P + ++      ++  +++  ++      
Sbjct: 651 LPLIAAHFALLEKAGFEIEMLNEITMIIRGVPFLFNQPMAQSQVKSFLEDFGNNKGISLP 710

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
           +++I      MAC  +I+   K+   E   L+  +    N   C HGRPT I L+ SDIE
Sbjct: 711 EEKI----IRMACKAAIKGNHKISKAECKNLVESLLVLENPFSCPHGRPTLISLEKSDIE 766

Query: 590 KLFGR 594
           KLF R
Sbjct: 767 KLFRR 771


>gi|164688071|ref|ZP_02212099.1| hypothetical protein CLOBAR_01716 [Clostridium bartlettii DSM
           16795]
 gi|164602484|gb|EDQ95949.1| hypothetical protein CLOBAR_01716 [Clostridium bartlettii DSM
           16795]
          Length = 687

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 130/491 (26%), Positives = 237/491 (48%), Gaps = 18/491 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L +  IN+IAAGE++ERPS  +KEL+EN++D+ +++V   I  GGK   +I+DNG G
Sbjct: 5   INILDDLTINKIAAGEVVERPSSVVKELLENAIDSGATQVVVDITDGGKKCIKISDNGEG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + S E+     RH TSKI   DD  ++++ GFRGEAL SI AVS++ ++++  +   G +
Sbjct: 65  ILSSEVEKCFLRHATSKIKSIDDLFDLYSLGFRGEALASISAVSNIEMVTKTKEEMIGTK 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I +SG KI    PV    GT + V+DLFF  P R  FLKS   ET  I+D+I ++AI  P
Sbjct: 125 IVLSGSKIIKKEPVGTKDGTTITVKDLFFNTPVRAKFLKSTHAETINISDLINKLAIGNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V   +               +      I  + G++  +N +E++ +  +I + GY G  
Sbjct: 185 NVRLKYINNSKLMLN---TPGDNKLISVIRSIYGKEITDNLIEVDYEDEKIKISGYIGNN 241

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N N  +++IN R V+ K IL  I  +Y   IP+ ++ V  L ++I+P ++DVN+H
Sbjct: 242 NIYRSNKNLQHIYINKRFVKSKVILDAINESYKSIIPINKFGVCFLNIKINPSEIDVNIH 301

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-------TSSVLSKKMISSFHQDNAPKT 353
           P K  ++F++   +   I   I+  +    +        +S    +  ++   ++     
Sbjct: 302 PTKLEVKFQDEKEVYIKIRDVIKNKLLNISLIGKYKSYDSSENYVQNKLNQIEENKTEVQ 361

Query: 354 HLPKYATSLTNTQEKL-FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
           ++          +E   +  +++ +       D  T+    + +EE       +  +   
Sbjct: 362 NINVAKNIEYKVKENNEYENKDQEAIKINERDDLSTFKSFKEALEEK----NHIDKSKED 417

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H N    ++ +     D+    E+  +        +    S+     + ++ +  + + 
Sbjct: 418 LHDNISYGESLNN-NNFDRIHEEEQSDYYSNMGYIENNTKESKYNDIDKKLEEISTQASF 476

Query: 473 IMEHDEDLHRL 483
           + E D+ L ++
Sbjct: 477 LEEQDDILDKI 487



 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 3/221 (1%)

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
             +ST      +     +      ++             I   YI+ +    + ++DQHA
Sbjct: 468 EEISTQASFLEEQDDILDKIVDNSQNTHFRASDFKVIGTILNTYIVLEKGTSMYLLDQHA 527

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           AHE++++E+    F +  I  Q LL P +I+L   +   + ++     + G + E FG N
Sbjct: 528 AHEKVLYEEYMTKFKNQNIDMQMLLDPIVIELSSVDMLDVEKNLNLFMKFGFEIEIFGDN 587

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
            I +R +P I       + +  IID I D  ++Y L+    + +A+M+C  +I++  K+ 
Sbjct: 588 HIMVRGVPNIFGVAQSEKFIFQIIDNIGDLESSYDLK---MDKIASMSCRAAIKANDKIH 644

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             E+N LL +MEK  N   C HGRP+ +++   +IEK+F R
Sbjct: 645 FDEINSLLSKMEKCENPYTCPHGRPSMVEISKKEIEKMFKR 685


>gi|332976872|gb|EGK13694.1| DNA mismatch repair protein MutL [Desmospora sp. 8437]
          Length = 365

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 186/360 (51%), Gaps = 6/360 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L +++ N+IAAGE++ERP+  +KEL+EN+LDA + R+   I  GG    +++DNG G
Sbjct: 4   IRLLDDQLANRIAAGEVVERPASVVKELVENALDAGADRIHIEIIEGGIRSIRVSDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  +A +RH TSKI    D  +I + GFRGEALPSI +VS LTL +       G +
Sbjct: 64  MDREDALLAFERHATSKIRRERDLFSIRSLGFRGEALPSIASVSKLTLTTARA-EGIGTR 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G K+ S    A +PGT V V +LFF  PARL +LK+   E + + D + R A+A+P
Sbjct: 123 LVLEGGKLLSTEDAARSPGTEVSVEELFFNTPARLKYLKTVNTEVSHVADHVGRQALAHP 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            +SF          ++     +G        + G+      + ++ +  +  ++G    P
Sbjct: 183 GISFVLMHNGK---ELFRTPGDGKLLHVAHALYGKQVARKMLPVDAEDMDFKVEGLAAKP 239

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R N +   + +NGR +++  +   +   Y   +P+GRYP+VVL L +DP+ VDVNVH
Sbjct: 240 EVTRSNRSYISIVVNGRYIRNIPVSQAVLRGYDTLLPIGRYPIVVLSLSMDPKLVDVNVH 299

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +R      +   I   ++    +  +   +   ++           +      A+
Sbjct: 300 PAKLEVRLSKEQELCRLIEGGLKALFREHVLIPQAASPRREHHPEPHPVQQRLQWNNDAS 359


>gi|170761162|ref|YP_001787120.1| DNA mismatch repair protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|238688735|sp|B1KSA2|MUTL_CLOBM RecName: Full=DNA mismatch repair protein mutL
 gi|169408151|gb|ACA56562.1| DNA mismatch repair protein MutL [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 666

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/341 (34%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++ +AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNK 340



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ+   + + L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKGNKNPDALYLNEHNTNSSSINIKENKSNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKSEIEKGYVISQILLSPVVIELSEDEFNIYEENKDIFKNSGFAVENF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G + I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GESTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|325685682|gb|EGD27761.1| DNA mismatch repair protein HexB [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 394

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 7/335 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++SR+   +   G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI D  D  NI T GFRGEAL SI AV+H+ +++      T  
Sbjct: 63  GIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILTSTDGQ-TAT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + A +G             GT + V D+F+  PARL +LKS + E   I D++ R+A+ +
Sbjct: 122 RAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S T ++       +     NGN  + ++ + G       + +  +  + TL G    
Sbjct: 182 PEISLTLASDGK---VLLRTPGNGNLKQDVANIYGRKVAEKMLTVENEDPDFTLYGLVSE 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + N   + +NGR +++  + S +   Y   +  G+YP+ VL +E DP  VDVNV
Sbjct: 239 ANLTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLG-GKYPIAVLAIEADPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K  +R      +   I  ++ +A+  +  ++ 
Sbjct: 298 HPTKEEVRLSKEKELSRLITSAVTEALMDEDEASP 332


>gi|255002938|ref|ZP_05277902.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004063|ref|ZP_05278864.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str.
           Virginia]
          Length = 419

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 129/364 (35%), Positives = 200/364 (54%), Gaps = 9/364 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K +N+IAAGE+I+ P+  +KEL+ENS+DA ++ +  +I  GG++   + D+G
Sbjct: 1   MPIVVLDAKTVNKIAAGEVIDCPASVVKELVENSIDAGATTINVLIDKGGRNLISVIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  +E+  A   H TSK+ D D +NI + GFRGE L SI AV+   ++S+        
Sbjct: 61  CGIPRDEMERAFICHATSKLPDNDLNNIRSMGFRGEGLTSIAAVARTKMVSKYRGCTEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I +  GEK   + P A+  GT +EVRDLFF  P RL FL++E+ ET  I D++ R A A
Sbjct: 121 SIVLEGGEKTRDLSPEALPCGTSIEVRDLFFATPTRLKFLRTEKAETQSIVDLMYRFATA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGY 236
               +F+ +      +K        +   R+ ++   G+ F   ++E+   S+ I + GY
Sbjct: 181 RFSTAFSLTIADKQIFKYPA---REDLMSRLWEMKPFGDAFREQSLEVRFHSDAINITGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +PTFNR   +  Y F+NGR V     +  I++AY+E IP  R+PVVV+ +EI P  VD
Sbjct: 238 ISVPTFNRSRPDMIYTFVNGRPVHSTLFMGAIKSAYSEFIPRDRHPVVVMCMEILPGDVD 297

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--TSSVLSKKMISSFHQDNAPKTH 354
           VNVHP+K  +RFRN   + + +++++  A++                +  F  DN P   
Sbjct: 298 VNVHPSKLEVRFRNRKQVYSVVVEALATALSSNVYRELPPRTPVGGGLDHFAVDNTPVLD 357

Query: 355 LPKY 358
            P Y
Sbjct: 358 TPHY 361


>gi|322806036|emb|CBZ03603.1| DNA mismatch repair protein MutL [Clostridium botulinum H04402 065]
          Length = 666

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/341 (34%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFIAAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++ +AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNK 340



 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + + L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKDNKNPDTLYLNEHNTNSSSINIKENKPNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKSEIEKGYVISQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVETF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GEYTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|153938478|ref|YP_001391054.1| DNA mismatch repair protein [Clostridium botulinum F str.
           Langeland]
 gi|166232085|sp|A7GE44|MUTL_CLOBL RecName: Full=DNA mismatch repair protein mutL
 gi|152934374|gb|ABS39872.1| DNA mismatch repair protein MutL [Clostridium botulinum F str.
           Langeland]
 gi|295319104|gb|ADF99481.1| DNA mismatch repair protein MutL [Clostridium botulinum F str.
           230613]
          Length = 666

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/341 (34%), Positives = 182/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++  AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHGAIKGELKESFTNFFNK 340



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + + L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKDNKNPDTLYLNEHNTNSSSINIKENKPNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +  +  + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKSEIENRYVISQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVETF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GEYTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|104774421|ref|YP_619401.1| DNA mismatch repair protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123251846|sp|Q1G939|MUTL_LACDA RecName: Full=DNA mismatch repair protein mutL
 gi|103423502|emb|CAI98404.1| DNA mismatch repair protein MutL [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 653

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 7/335 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LSE + NQIAAGE+IERP+  +KEL+EN++DA++SR+   +   G     + DNG 
Sbjct: 3   KIHELSENLTNQIAAGEVIERPASVVKELVENAIDAQASRIRVEVQHSGLKQISVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A  RH TSKI D  D  NI T GFRGEAL SI AV+H+ +++      T  
Sbjct: 63  GIAPDQVDLAFMRHATSKIQDEHDLFNIATLGFRGEALASIAAVAHVEILTSTGGQ-TAT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           + A +G             GT + V D+F+  PARL +LKS + E   I D++ R+A+ +
Sbjct: 122 RAAFAGGVKKFQEDAGSAKGTKITVGDIFYNTPARLKYLKSPKTELLKIVDIVNRIALGH 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++S T ++       +     NGN  + ++ + G       + +  +  + TL G    
Sbjct: 182 PEISLTLASDGK---VLLRTPGNGNLKQDVANIYGRKVAEKMLTVENEDPDFTLYGLVSE 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + N   + +NGR +++  + S +   Y   +  G+YP+ VL +E DP  VDVNV
Sbjct: 239 ANLTRSSRNFISILLNGRYIKNYQLSSALLDGYGNKLG-GKYPIAVLAIEADPLLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K  +R      +   I  ++ +A+  +  ++ 
Sbjct: 298 HPTKEEVRLSKEKELSRLITSAVTEALMDEDEASP 332



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 9/229 (3%)

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
           K + Q  +  T     +     +       +     +   +        Y++++    L 
Sbjct: 428 KSWDQHVKEQTALPPFAGGEEAASPVTSKADQLLRQHLPALRLLGQMGGYLLAEHEGDLY 487

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQ AA  RL ++++       +   Q LL P + D    +   + +    L +LG++ 
Sbjct: 488 LIDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSVYDYQKLKDQLPLLRQLGLEM 547

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS-- 545
           E FG N + +   P  L K  +   +R+++D+++ S          +++L  +A   +  
Sbjct: 548 EDFGQNTLLMHSYPTWL-KGEVTVQVRELLDQLLSSRENDG-----KSLLKLVAAKAAES 601

Query: 546 -IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            +     +   E   LL  ++   +  +   G+   ++L  +D+ KLF 
Sbjct: 602 NVSRRVNLTGAEAADLLLRLQTASDPYRDASGQLAVVRLSQNDLSKLFK 650


>gi|153933845|ref|YP_001384056.1| DNA mismatch repair protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936560|ref|YP_001387597.1| DNA mismatch repair protein [Clostridium botulinum A str. Hall]
 gi|166232084|sp|A7FUK9|MUTL_CLOB1 RecName: Full=DNA mismatch repair protein mutL
 gi|152929889|gb|ABS35389.1| DNA mismatch repair protein MutL [Clostridium botulinum A str. ATCC
           19397]
 gi|152932474|gb|ABS37973.1| DNA mismatch repair protein MutL [Clostridium botulinum A str.
           Hall]
          Length = 666

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/341 (34%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +++
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILSH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++ +AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNK 340



 Score =  199 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + + L  ++    S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKDNKNPDILYLNEHNRNSSPINIKENKSNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKCEIEKGYVISQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVETF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GEYTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|293977959|ref|YP_003543389.1| DNA mismatch repair protein MutS [Candidatus Sulcia muelleri DMIN]
 gi|292667890|gb|ADE35525.1| DNA mismatch repair enzyme (predicted ATPase) [Candidatus Sulcia
           muelleri DMIN]
          Length = 536

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 268/590 (45%), Gaps = 60/590 (10%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I+ LS+ + N+IA+GE+I  PS  +KE++ENS+DA +  ++ ++  GGK+   I D
Sbjct: 1   MTNVIKFLSKNVSNKIASGEVIHNPSSILKEILENSIDAYAKNIKIILKNGGKNRIHIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G GM+  +   + +R+ TSKI+  +D  NI T GFRGEAL  I +V+ + + +R  +++
Sbjct: 61  DGIGMSKNDAIKSFERYSTSKINKIEDILNISTKGFRGEALSYISSVTQIEIETRYIESD 120

Query: 117 TGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
            G ++ I   K+  +  P+AM+ G  + ++++F+ IPA+  FLKS ++E   I +   ++
Sbjct: 121 IGIRLIIENGKLKYNPLPIAMDKGCSICIKNIFYNIPAKRKFLKSSKLELKNIINEFYKL 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+++  ++F         + +       ++ ERI  + GE      +++ + +N + LQG
Sbjct: 181 ALSHNDINFYLENDNKILFDLKS----SSYKERIIHIFGEKIKKFLIKIKKTTNLVKLQG 236

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y   P + + N  + Y+F+N R +++K I   I T+Y   I     P   L L ++P + 
Sbjct: 237 YITNPKYYKSNKLEQYLFLNKRFIKNKKIHDAIITSYEGLINKKYNPSYFLFLTMEPSKF 296

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           ++N+ P+K+ ++F +   +   I  +I++ +  K IS                       
Sbjct: 297 NINISPSKTEVKFYDEICLCKQITSTIKECLGIKKIS----------------------- 333

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                         FL +                +E            +       QI+ 
Sbjct: 334 -------------NFLLKQVNVKKLSTREITYFNNEYKKLKNNKLKKSFNEKYKWIQIYN 380

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YII      L++VDQ+ AH+R++++    +    +I       P  I +       I +
Sbjct: 381 KYIIGFLNYRLILVDQNRAHQRILYDYFDNNSFKKRI---KFKFPIEIKISNKNRFFIKK 437

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
               L+ LG K      + + ++ IP +L   NI + +  II+            +    
Sbjct: 438 ILYKLNNLGFKIYLI-KDIMLVKYIPIVLYIYNIYKFIEIIIEN----------GNLNNE 486

Query: 536 ILATMACY-GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            L    C   SI++G K+  +E+  L++ +  +       +GR     + 
Sbjct: 487 FLYKKICKFFSIKNGEKLSKLEIKYLIKNLFDSNKPYYTPYGRKIIFNIN 536


>gi|241888857|ref|ZP_04776163.1| DNA mismatch repair protein MutL [Gemella haemolysans ATCC 10379]
 gi|241864533|gb|EER68909.1| DNA mismatch repair protein MutL [Gemella haemolysans ATCC 10379]
          Length = 707

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 6/335 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS ++ N+IAAGE++ERPS  +KEL+ENS+DA S+ ++ +I   G    +I DNG 
Sbjct: 3   KINILSAELSNKIAAGEVVERPSSVVKELVENSIDAGSTNIKVIIKEFGIQQIRIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++  A  RH TSKIS   D  +I T GFRGEAL SI +VS +T+ S       G 
Sbjct: 63  GISNDDLARAFLRHATSKISADYDLFHIETLGFRGEALASISSVSKVTIKSC-AGEAQGK 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+ S    A   GT + V +LF+  PARL +L++   E   IT++I + A++Y
Sbjct: 122 ILVLEGGKVVSEEYYAPIKGTDLSVENLFYNTPARLKYLRNPHTEQANITNIIHKFALSY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F         +K      +G+  + +S++       N +E +  +++  + GY  +
Sbjct: 182 PNVAFELHVDGKITFKTY---GDGDVHKILSKIYNMGVARNMIEFSGNNDDYKVFGYISV 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   +FINGR +++  I + I  AY   + + RYP+ V+ +E+DP  +DVNV
Sbjct: 239 PEETRASKNYINIFINGRYIKNYGIQNAIIDAYGTLLMINRYPLCVINIEMDPILLDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K  +R      +   I + I + ++       
Sbjct: 299 HPTKQEVRLSKEAELIRLIKEVIAERLSNYTYIPQ 333



 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 110/198 (55%), Gaps = 2/198 (1%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           ++++          AQI + YI+S+  + L ++DQHAA ER  +EK++++F   K   + 
Sbjct: 510 DDTKVRTLPDLKVLAQIFKTYILSEADNKLFLIDQHAAAERYNYEKLQREFIERKNYKKQ 569

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +L P + D    E A +  + E    LGI  E FG N+  +RE P  + +++  Q+++ I
Sbjct: 570 MLIPLMFDFSVEEAAEVRNNLEKFEELGIVFEEFGDNSYVVREFPGWI-EEDEEQMIKII 628

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +++++  +   T  +   + +A  +C  SI++ + +  +EMN+++ ++ +  N   C HG
Sbjct: 629 VEKVLRKNNI-TFNELRNDAIAMASCKMSIKANQVLTDVEMNKVISDLYECKNPFTCPHG 687

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP   K++  D+EK+F R
Sbjct: 688 RPIITKMEKKDLEKMFKR 705


>gi|327275079|ref|XP_003222301.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Anolis
           carolinensis]
          Length = 746

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 197/423 (46%), Gaps = 21/423 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE++EN LDA+++ ++  +  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMVENCLDAKATSIQVTVKDGGLKLIQIQDNGCG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ S+        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITSKTADGKCAYR 127

Query: 121 IAISGEKISS-VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+ S  +P A N GT + V DLF+ +  R   LK+   E   I DV+ R AI  
Sbjct: 128 ANYSDGKLKSAPKPCAGNQGTQITVEDLFYNVTTRRKALKNPSEEYAKILDVVSRYAIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGYT 237
             VSF+          +   S NG   + I  V G       +E+  +       ++GY 
Sbjct: 188 SGVSFSVKKQGETVADVRTLS-NGTTVDNIRSVFGNAVSRELIEVGCEDTALAFKMKGYV 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + + LEI P+ VDV
Sbjct: 247 TNANYSVKKCTFL-LFINHRLVESSALRKAIETVYAAYLPKNTHPFLYISLEITPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFI--------------IQSIQKAINKKGISTSSVLSKKMIS 343
           NVHP K  + F +   I   +                   + +      +S+ + K   S
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGATVSSTDVVKTTNS 365

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
           S  Q            T   + +   FLQ    ST   L  +  +    N   +E++   
Sbjct: 366 SVGQGGDKVYAHQMVRTDSRDQKLDAFLQPLNKSTTPGLAEEPESDVPKNTRCKETQLQD 425

Query: 404 YQL 406
           +++
Sbjct: 426 FEM 428


>gi|168180372|ref|ZP_02615036.1| DNA mismatch repair protein [Clostridium botulinum NCTC 2916]
 gi|226949040|ref|YP_002804131.1| DNA mismatch repair protein [Clostridium botulinum A2 str. Kyoto]
 gi|254766164|sp|C1FNT8|MUTL_CLOBJ RecName: Full=DNA mismatch repair protein mutL
 gi|182668696|gb|EDT80674.1| DNA mismatch repair protein [Clostridium botulinum NCTC 2916]
 gi|226840747|gb|ACO83413.1| DNA mismatch repair protein MutL [Clostridium botulinum A2 str.
           Kyoto]
          Length = 666

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/341 (34%), Positives = 184/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG++  +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQNLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 PEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++ +AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNK 340



 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + + L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKDNKNLDALYLNEHNTNSSPINIKENKPNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKSEIEKGYVISQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVETF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GECTINIKEVPLILGKPNVEDLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+  M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIENMLTLNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|322371529|ref|ZP_08046075.1| DNA mismatch repair protein MutL [Haladaptatus paucihalophilus
           DX253]
 gi|320548820|gb|EFW90488.1| DNA mismatch repair protein MutL [Haladaptatus paucihalophilus
           DX253]
          Length = 734

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 191/382 (50%), Gaps = 8/382 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LSE  I +IAAGE++ERP+  +KEL+ENSLDA++SR+   + GGG     +TD+G G
Sbjct: 8   IRALSETTIQRIAAGEVVERPASVVKELVENSLDADASRISVRVDGGGTERIAVTDDGIG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           M+ E++ +AV+ H TSKI   DD  + + T GFRGEAL +IGAVS   + ++P    +G 
Sbjct: 68  MSREDVQIAVEEHTTSKIRDIDDLESGVATLGFRGEALYTIGAVSRTKIRTKPRGGESGT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G  +  V P     GT VEV DLFF  PAR  +LK++  E   +  V+ + A+A 
Sbjct: 128 ELRLVGGDVEGVGPAGCPEGTTVEVEDLFFNTPARRKYLKTDSTEFAHVNRVVTQYALAN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+        +     +  GN    I  V G +     + ++   + +   GY   
Sbjct: 188 PDVAFSLEHDGREVF---STTGRGNLQSTILSVYGREVATAMIAVDG-GDAVDASGYVSH 243

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R        ++NGR V+   +   I  AY   +   RYP  VL L++    VDVNV
Sbjct: 244 PETTRSTREYVATYVNGRYVRSSVVREAILDAYGNQLAPDRYPFAVLFLDVPADSVDVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF +   ++  +  ++Q A+   G+  +S    +       D  P+    +  
Sbjct: 304 HPRKMEVRFGDEARVKTAVRDAVQDALLDNGLVRASAPRGRSAPD-ETDVTPEPVQSELG 362

Query: 360 TSLTNTQEKLFLQENRLSTNDL 381
              +  ++    +    +  + 
Sbjct: 363 DGDSAGRKNASGETADSNAAES 384



 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
           +    +T +     E + S      +   T  E     +E+            Q+H  Y+
Sbjct: 487 SAGTGSTTDAARDPERKFSAPTATTTLPETGGEGAKEADEASFERLPSMRILGQLHDTYV 546

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +++T DGLV++DQHAA ER+ +E++ + F     T+Q L +   ++L   E AL  ++ E
Sbjct: 547 VAETDDGLVLIDQHAADERVNYERLCRQFAGDT-TTQVLASSVELELTAAEAALFDDYRE 605

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII--DSSTTYTLQDRIENI 536
            L RLG  A       + +  +PA+  K   P LLRD++ E I  +S    + +   + +
Sbjct: 606 ALARLGFHAALVDDRTVEVTTVPAVFEKTLSPDLLRDVLSEFISVESGGANSAEAVADEL 665

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ +ACY SI     ++  ++  LL  +++  N   C HGRP  I+    +IE  F R
Sbjct: 666 ISDLACYPSITGNTSLREGDVVSLLAALDECENPYACPHGRPVVIEFNREEIEDRFER 723


>gi|329767739|ref|ZP_08259255.1| hypothetical protein HMPREF0428_00952 [Gemella haemolysans M341]
 gi|328838840|gb|EGF88434.1| hypothetical protein HMPREF0428_00952 [Gemella haemolysans M341]
          Length = 707

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 113/335 (33%), Positives = 184/335 (54%), Gaps = 6/335 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS ++ N+IAAGE++ERPS  +KEL+ENS+DA S+ ++ +I   G    +I DNG 
Sbjct: 3   KINILSAELSNKIAAGEVVERPSSVVKELVENSIDAGSTNIKVIIKEFGIQQIRIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++  A  RH TSKIS   D  +I T GFRGEAL SI +VS + + S       G 
Sbjct: 63  GISNDDLARAFLRHATSKISADYDLFHIETLGFRGEALASISSVSKVVIKSC-AGEAQGK 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+ S    A   GT + V +LF+  PARL +L++   E   IT++I + A++Y
Sbjct: 122 MLVLEGGKVVSEEYYAPIKGTDLSVENLFYNTPARLKYLRNPHTEQANITNIIHKFALSY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F         +K      +G+  + +S++       N +E +  +++  + GY  +
Sbjct: 182 PNVAFELHVDGKITFKTY---GDGDVHKILSKIYNMGVARNMIEFSGSNDDYKVFGYISV 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N   +FINGR +++  I + I  AY   + + RYP+ V+ +E+DP  +DVNV
Sbjct: 239 PEETRASKNYINIFINGRYIKNYGIQNAIIDAYGTLLMINRYPLCVINIEMDPILLDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           HP K  +R      +   I + I + ++       
Sbjct: 299 HPTKQEVRLSKEAELIRLIKEVIAERLSNYTYIPQ 333



 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 111/198 (56%), Gaps = 2/198 (1%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           ++++          AQI + YI+S+  + L ++DQHAA ER  +EK++++F   K   + 
Sbjct: 510 DDTKVRTLPDLKVLAQIFKTYILSEADNKLFLIDQHAAAERYNYEKLQREFIERKNYKKQ 569

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +L P + D    E A +  + E    LGI  E FG N+  +RE P  + +++  Q+++ I
Sbjct: 570 MLIPLMFDFSVDEAAEVRNNLEKFEELGIVFEEFGDNSYVVREFPGWI-EEDEEQMIKII 628

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +++++ ++   T  +   + +A  +C  SI++ + +  +EMN+++ ++ +  N   C HG
Sbjct: 629 VEKVLKNNNI-TFNELRNDAIAMASCKMSIKANQVLTDVEMNKVISDLYECKNPFTCPHG 687

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP   K++  D+EK+F R
Sbjct: 688 RPIITKMEKKDLEKMFKR 705


>gi|257386447|ref|YP_003176220.1| DNA mismatch repair protein MutL [Halomicrobium mukohataei DSM
           12286]
 gi|257168754|gb|ACV46513.1| DNA mismatch repair protein MutL [Halomicrobium mukohataei DSM
           12286]
          Length = 709

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 124/397 (31%), Positives = 201/397 (50%), Gaps = 12/397 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L    + +IAAGE++ERP+  +KEL+EN+LDA++ RV   +  GG    ++TD+G G
Sbjct: 9   IRRLDSATVERIAAGEVVERPASVVKELVENALDADADRVSVAVEQGGIEGIKVTDDGIG 68

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-G 118
           M+ E +  AV+ H TSKIS  +D    + T GFRGEAL +IGAVS  T+ +RP      G
Sbjct: 69  MSREAVERAVEEHTTSKISSIEDLERGVGTLGFRGEALHAIGAVSRTTITTRPRGREHQG 128

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ + G  +++V P     GT +EV DLF+ +PAR  +LK    E   +  V+   A+A
Sbjct: 129 TELVVEGGDVTAVEPAGCPAGTTIEVDDLFYNVPARRKYLKQTSTEFAHVNTVVTSYALA 188

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN----EKSNEITLQ 234
            P V+ T S      +     +  G+    +  V G D   + +E++          ++ 
Sbjct: 189 NPDVAVTLSHDGRETF---ATTGQGDLEATVLSVYGRDVAQSMIEVDDGDLPDGPLESVT 245

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G    P  NR + +    ++NGR V+   +   I  AY   +   RYP  VL   +DP  
Sbjct: 246 GLVSHPETNRASRDYLSTYVNGRYVRADAVREAIVDAYDTQLAPDRYPFAVLFCAVDPAT 305

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP K  +RF +   +R  +  ++Q A+  +G+  SS    +  ++   + AP++ 
Sbjct: 306 VDVNVHPRKMEVRFADDEGVRRQVEHAVQSALLSEGLVRSSAPRGRS-AAEQTEIAPESG 364

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                T  T  +E+   +++   +       D   S+
Sbjct: 365 RVDDETDATGAREEADGEQSDGDSAGEARRRDTPVSD 401



 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 3/240 (1%)

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
              ++ T+  ++   +  R +  +     D   +                     Q+H+ 
Sbjct: 461 SAQSTRTDDADRGRARTGRDADPERKFRGDDRQARLGGEEPGQSLDSLPALRILGQLHET 520

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           Y++++  DGLV++DQHAA ER+ +E+++  F   + T+Q L  P  ++L  GE A+  + 
Sbjct: 521 YVVAEADDGLVVIDQHAADERINYERLKDAF-EGETTTQALAEPVELELTAGEAAVFEDR 579

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII--DSSTTYTLQDRIE 534
            E L RLG  A+R G   + +R +P +++    P+L++D++   +  +     T++   +
Sbjct: 580 VEALARLGFHADRTGDRTVEVRTVPGVIADAAGPELVQDVLAAFVAGEHEAADTVEAAAD 639

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +LA +ACY SI     +    +  LL  ++   N   C HGRP  +++   ++E  F R
Sbjct: 640 ELLADLACYPSITGNTSLTEGSIRELLAALDDCENPYACPHGRPVVVEIDRGELEDRFER 699


>gi|57238946|ref|YP_180082.1| DNA mismatch repair protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578879|ref|YP_197091.1| DNA mismatch repair protein MutL [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161025|emb|CAH57931.1| DNA mismatch repair protein MutL [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417505|emb|CAI26709.1| DNA mismatch repair protein MutL [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 689

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 216/399 (54%), Gaps = 4/399 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  + IN+IAAGE+IE P+  +KEL+ENS+DA+++ V   I  GG++   + D+G
Sbjct: 1   MSIVLLDSRTINRIAAGEVIECPASVVKELVENSIDAKATTVSITIERGGRNLILVCDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  E++ +A  RH TSK+ D D + + + GFRGE L SI AVS + ++SR   ++T  
Sbjct: 61  IGIKKEDMEIAFVRHATSKLPDGDLTKVKSLGFRGEGLTSIAAVSKVKMVSRCQGSDTAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I I  GEK+  + P  ++ GT +EVRDLFF  P RL FLK+E+ E   I D++ ++A+ 
Sbjct: 121 SIEIEGGEKVQELIPNPLSCGTYIEVRDLFFATPNRLKFLKTEKAEVQSIIDMVNKLAMV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + F+        +K   Q +  +    I  ++G  F  N++ ++   + I L GY G
Sbjct: 181 NHDIKFSLCVDGKQVFKYLKQQSEIDRLAEIK-ILGTGFYENSLPVHFVESMIALTGYIG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           IPT +RG ++  Y F+NGR + D  ++  +R AY++ I   +YP+VVL + +   QVD N
Sbjct: 240 IPTMSRGKSSLIYTFVNGRPIYDNMLVGAVRYAYSDFIERDKYPIVVLYINMPYDQVDTN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-THLPK 357
           VHP KS +RF++  +I   ++ +I+ A+  K  +     +      F +DN  K  +L  
Sbjct: 300 VHPNKSEVRFQDKRLIYKVVVNAIKNALAVKMNNKFRSDNNFSEDPFEKDNIAKVKNLGV 359

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
            + S          Q ++ +        D      +  +
Sbjct: 360 NSPSFQFVAPSSHEQSSKDNKEQYSCISDFGIPNSDKQL 398



 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 1/218 (0%)

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            +D   S +      +   E +    Y LG A  Q+H  YI++QT DG+VIVDQHAAHER
Sbjct: 471 EHDTHLSLNAVPKSISHKQENTLVDCYPLGYAICQVHSRYIVAQTKDGIVIVDQHAAHER 530

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEG-ECALIMEHDEDLHRLGIKAERFGPNAIA 496
           LI+E M+Q      +  Q LL PE++++  G +  L+ME+   L +LG+  E  G  ++ 
Sbjct: 531 LIYEYMKQVMEKEGVKRQILLIPEVVEMNNGCDLELLMEYKNKLLKLGLLIESLGDLSVI 590

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +RE+PA+    ++  L+  I+D I +   T  L ++I++I  T+ACY SIRSGRK++  E
Sbjct: 591 VREVPAVFGSFDVKALIFHILDSIAEVGDTLFLNNKIKDICGTIACYSSIRSGRKLKIEE 650

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR ME    S QCNHGRPT+IKL L +I+KLF R
Sbjct: 651 MNALLRNMENTSYSGQCNHGRPTYIKLSLLEIDKLFLR 688


>gi|312213872|emb|CBX93874.1| similar to DNA mismatch repair protein [Leptosphaeria maculans]
          Length = 774

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 144/571 (25%), Positives = 241/571 (42%), Gaps = 43/571 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LS+ ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 57  RIKPLSQDVVNKIAAGEIIVAPVHALKELIENAVDAGSTSIEVLVKDGGLKLLQITDNGH 116

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+   +D ++I T+GFRGEAL SI  ++HL + +R  +++   
Sbjct: 117 GIDKEDLPILCERFTTSKLKQFEDLTSIGTYGFRGEALASISHIAHLKVTTRTKESSCAW 176

Query: 120 QIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +G K++          +P A   GT + V DLF+ +P+R    +S   E   I D+
Sbjct: 177 EAMYAGGKLTSAKPGGSVEPKPKAGRMGTQITVEDLFYNVPSRRRAFRSASEEYAKILDL 236

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V+F+      N       +      +RI Q+ G    N  VEL  +    
Sbjct: 237 VGRYAVHCQGVAFSCKKAGENTGSSVAVAATATTRDRIRQIHGTAAANELVELEVEDKQW 296

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +G+     ++        +FIN R+V+   I  ++   YA  +P G +P   L LE
Sbjct: 297 GFKCRGWVSNANYS-AKRTHMLLFINHRSVESPAIKKSVEQTYAMFLPKGGHPFFYLSLE 355

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   +   I+  ++K   S S        S      
Sbjct: 356 IEPQRVDVNVHPTKREVHFLNEDEIIATVCDEIRSGLSKVDTSRS----FMTQSLLSNPK 411

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
            P     K     + T          LST     +      E+N    ++ A      + 
Sbjct: 412 VPFATPMKPTQPPSTTPTTTGDNTPDLSTAKTPRTTMMRPKENNLVRTDASARKITSMLQ 471

Query: 410 CAQIHQNYIISQ-----TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                ++    +            +       + +  ++R   ++      +  T   I 
Sbjct: 472 LQHSVEDTAEEEVEIDDEHTEKEPIPCRLTSIKRLRAEVRDAMHNELTDIISTHTFVGIV 531

Query: 465 LLEGECALIME------------HDEDLHRLGI-KAERFGPNAIAIREIPAI----LSKK 507
             +   A I               +E  ++LG+     FG     IR  P +    L K 
Sbjct: 532 DEQKRIAAIQAGVKLFLVDYGLLCNEFFYQLGLSDFANFGS----IRFHPPLALRDLLKL 587

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            + Q  R   DE+       +++  +    A
Sbjct: 588 AVEQEQRRCADEVDWQDVVDSVESLLVEKAA 618


>gi|319944426|ref|ZP_08018700.1| DNA mismatch repair protein MutL [Lautropia mirabilis ATCC 51599]
 gi|319742387|gb|EFV94800.1| DNA mismatch repair protein MutL [Lautropia mirabilis ATCC 51599]
          Length = 753

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 125/329 (37%), Positives = 187/329 (56%), Gaps = 9/329 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L + +I+QIAAGE+IERP+ AIKEL+EN+LDA +S++E  I  GG    Q+ DNG 
Sbjct: 21  PIALLPDVLISQIAAGEVIERPASAIKELLENALDAGASQIEIRIEEGGLRRLQVIDNGR 80

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+A+ RH TSKI+   D  ++ + GFRGEAL S+ AVS LTL SRP     G 
Sbjct: 81  GIEKDQLPLALARHATSKIASLADLEHVTSLGFRGEALASMAAVSRLTLASRPLAAEHGW 140

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     G+      P A+ PGT++EV DLF   PAR  FLKS   E     D IRR+A++
Sbjct: 141 KVDVQPGQAAPPPEPAAIAPGTVIEVIDLFSATPARRKFLKSPATEAAYCLDAIRRIALS 200

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +P V F          +    +        +            + ++ ++  + ++G  G
Sbjct: 201 HPAVQFVVHQDGREVRRWPATTPAQRIENLVGDG------ARLLPVSAQAGPLAVEGLLG 254

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P   R  +++ Y+F+NGR V+D+ +   IR A+ + +   RYPV  L L IDP  VD N
Sbjct: 255 EPDAARARSDRQYLFVNGRFVRDRMLAQAIRQAFRDRLHGERYPVFALFLTIDPTLVDAN 314

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           VHPAK+ +RFR+P  +R+ +  +I+ A+ 
Sbjct: 315 VHPAKTEVRFRDPGAVRHLVFHAIENALA 343



 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 78/194 (40%), Positives = 123/194 (63%)

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
           A   ++G A AQ+H  YI+SQT DGL+IVD HAAHER++ E++++     +I  Q LL P
Sbjct: 558 AHTPRMGFALAQLHGIYILSQTADGLIIVDMHAAHERIVLERLKKAHRDHRIARQPLLIP 617

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            +    E + A + +  + L  LGI  E  GP+ +A+  +PA+LS+ N  +L R+++   
Sbjct: 618 AVFQATELDVATVTDDADSLGDLGIDLEVRGPDTLAVTSVPALLSRANPEKLAREVLAAW 677

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
              +    L+ R++ +LATMAC+GS+R+ R +   EMN LLR+ME  P++  CNHGRPT+
Sbjct: 678 QAPAQHNALEKRLDRLLATMACHGSVRANRALTLPEMNALLRDMEATPDADFCNHGRPTW 737

Query: 581 IKLKLSDIEKLFGR 594
            +L L ++++ F R
Sbjct: 738 FRLTLEELDRWFMR 751


>gi|326316136|ref|YP_004233808.1| DNA mismatch repair protein MutL [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372972|gb|ADX45241.1| DNA mismatch repair protein MutL [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 698

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 118/340 (34%), Positives = 192/340 (56%), Gaps = 20/340 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA + +V   +  GG     + D+G 
Sbjct: 11  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGARQVTVRLLAGGVRLIAVEDDGC 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A++RH TSKI++  D  ++ T GFRGEAL +I +VS + L+SR  +  T  
Sbjct: 71  GIPPEELPVALRRHATSKITNLHDLESVATMGFRGEALAAIASVSEMALLSRTEEQPTAF 130

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+A 
Sbjct: 131 LLDARSGEL---RPAARSRGTTVEVKELFFSTPARRKFLKTDATELAHCIEAVRRHALAR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQ---------------STNGNFPERISQVIGEDFINNAVEL 224
           P V F          +                   +       R+S V+GEDF+  ++ +
Sbjct: 188 PDVGFAIWHEGKLVEQWRATLAAPAASADGAVDDAALEDALARRLSDVLGEDFLAESIAV 247

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
             +S  +T+ G  G+P   R  A+Q + ++NGR V+DK +    R+AY + +   + PV 
Sbjct: 248 RHRSGPVTVTGRAGLPDAARSRADQQFCYVNGRFVRDKVLTHAARSAYEDVLHGQKQPVY 307

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
            L + IDP +VDVNVHP K  +RFR+   +   +  +++ 
Sbjct: 308 ALYVAIDPMRVDVNVHPTKIEVRFRDSREVHQAVRHAVEN 347



 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 146/327 (44%), Gaps = 20/327 (6%)

Query: 269 RTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R A         + V  L      + +  +  P  +   F  P+     +          
Sbjct: 389 RQAAMHFDARPGHRVTDLEALWGRKDITPSARPDGTAAAFAQPSGPHAPL------PFAP 442

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
              +T++V       +      P T +P             F  E+  S     P+ D  
Sbjct: 443 VTGATATVQEAPAAYAMATGGLPATGMPAVPQEGAPDGAGTFAAESGASAQAEAPAGD-- 500

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFN 448
                      E   + LG A AQIH  Y++++   G+VIVD HAAHER+++E+++   +
Sbjct: 501 -----------EPEVWPLGRAVAQIHGVYVLAENAQGMVIVDMHAAHERIVYERLKSQVD 549

Query: 449 -STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
            S +I SQ LL P        E A    H   L  LG++   F P  +A+R +P  L++ 
Sbjct: 550 ASERIASQPLLIPATFAATPEEVATAEAHAGTLDMLGLEVSPFSPRTLAVRAVPTSLAQG 609

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +  +L R ++ E+     T  +Q     IL TMAC+G++R+ R++   EMN LLR+ME  
Sbjct: 610 DAVELARSVLAELAAHDATTVVQRARNEILGTMACHGAVRAHRRLTLDEMNALLRQMEVT 669

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             S QCNHGRPT+ +L + +++ LF R
Sbjct: 670 ERSDQCNHGRPTWRQLSMRELDALFLR 696


>gi|116749352|ref|YP_846039.1| DNA mismatch repair protein MutL [Syntrophobacter fumaroxidans
           MPOB]
 gi|254766182|sp|A0LJK2|MUTL_SYNFM RecName: Full=DNA mismatch repair protein mutL
 gi|116698416|gb|ABK17604.1| DNA mismatch repair protein MutL [Syntrophobacter fumaroxidans
           MPOB]
          Length = 670

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 205/395 (51%), Gaps = 11/395 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L + + NQIAAGE++ERP+   KEL+ENS+DA + R+   IA GG+   ++ DNG 
Sbjct: 3   RITILPDILCNQIAAGEVVERPAAVAKELLENSIDAGARRISLSIADGGRKEIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++  +A++RH TSKI   +D   I + GFRGEALPSI AVS   L++R P    G 
Sbjct: 63  GMHPDDALLALERHATSKIRSIEDLQAIGSLGFRGEALPSIAAVSRFELVTREPDAVAGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I + G  +  VR      GT + VRDLF+ +PAR  FL++   ET  I D  +R+A+A+
Sbjct: 123 FIRVEGGVVREVRETGSPAGTRITVRDLFYNVPARRKFLRAADTETAYICDQFQRLAMAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V F     +  +Y         +  ER  QV+G + +  A+    ++    L+G  G 
Sbjct: 183 HAVHFQLINRERTQYDF---PGAASPEERAGQVLGAETLKRAIPFCVENASARLRGMVGT 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R N++  +VF+NGR V D+ +   I  A+   IP G++PV VL LE+DP  VDVNV
Sbjct: 240 PDLQRANSHSLFVFVNGRPVWDRAVNRAILAAFESLIPRGKFPVAVLFLELDPLHVDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +RF++P  + + +  +I+ A+                ++  +  +       + 
Sbjct: 300 HPTKREVRFKHPGGVIDTVRGAIRDALCHLR------PLHGSAAAAPRPFSETADQRAFR 353

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
            SL    +  F +   LS     PS+        D
Sbjct: 354 DSLVREGQLSFDRGRPLSRPPGFPSERWRERHRPD 388



 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 122/262 (46%), Gaps = 5/262 (1%)

Query: 335 SVLSKKMISSFHQDNAPKTHLPK--YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
           S  +    S F +  AP+   P   +                 ++ +    +D     E 
Sbjct: 411 SPPAAPADSLFDEGAAPQPDNPDTDFFAEPKRAAGGPASTHAPVTVDTAAFADAFQAFEA 470

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
              +   +           Q+   YI+ +  DGL+++DQHAAHER+IF+ +   F +   
Sbjct: 471 ATHLHAGDVPALAELPVIGQLANTYILLEAPDGLILIDQHAAHERIIFDAL--SFPAGGP 528

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             Q L+ P +IDL   + A++      L  +G++ E FG ++  +  +PA L +     L
Sbjct: 529 ARQRLIRPAVIDLPPRDAAMLRRWLPLLEEIGVEIESFGGDSFVVHAVPAPLGECPPEGL 588

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +R+++   I+        + +  +  T AC+ ++R+G++++  E+  LL  +++   +S 
Sbjct: 589 VRELLASAIE-GDDAPRWNVLGRLAKTAACHRAVRAGQRLRPEEIRLLLEGLDRTRFAST 647

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRP + K+ LSD+ +LF R
Sbjct: 648 CPHGRPVWYKMTLSDVARLFQR 669


>gi|261367033|ref|ZP_05979916.1| DNA mismatch repair protein MutL [Subdoligranulum variabile DSM
           15176]
 gi|282571151|gb|EFB76686.1| DNA mismatch repair protein MutL [Subdoligranulum variabile DSM
           15176]
          Length = 687

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 111/368 (30%), Positives = 192/368 (52%), Gaps = 5/368 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L +     IAAGE++ERP+   KEL+EN++DA ++++      GG +  QI DNG G
Sbjct: 4   IRVLDKHTAELIAAGEVVERPASVAKELLENAIDAGATQITLSATRGGIAQLQIVDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +E I  A  RH TSKI  ++D ++IHT GFRGEAL SI +V+ + +++R  Q+     
Sbjct: 64  IEAEYIDKAFIRHATSKIASAEDLNHIHTLGFRGEALASIASVAKVEVLTRTEQDEYACC 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I+G +     P A   GT + V +LF+  PAR+ FLK +  E   + + +   A+++P
Sbjct: 124 YRIAGGEPQGTEPGARPVGTTITVNELFYNTPARMKFLKKDASEGTYVAETVLHAALSHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF F      ++       +G     +  V+G +F  + + ++  +    + G    P
Sbjct: 184 EISFRFIREGKQQFM---TPGDGELRSAVYAVMGREFARDLLPVDGGNGVYRITGLITPP 240

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R +    + F+NGR V+++ +++ +  AY  T+  G++P  VL+LE+    VDVNVH
Sbjct: 241 RACRASRGTQHFFVNGRYVKNRTMMAALENAYKGTMMQGKFPGAVLMLEMPADLVDVNVH 300

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK+ IRF   + + + + ++++ A+   G            S+   +   K    +   
Sbjct: 301 PAKTEIRFARESDVFDAVYRAVRTALTTPGSGECRFEMSHDTSAQKAEVPAKQPSSQGTP 360

Query: 361 SLTNTQEK 368
           +     EK
Sbjct: 361 AHPQVPEK 368



 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 107/190 (56%), Gaps = 3/190 (1%)

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
           Q      ++ + YII++    L ++D+HAAHER++FEK+ +D+ +  + +Q LL P  ++
Sbjct: 499 QPLRLVGEVFKTYIITEREGELCLIDKHAAHERILFEKLAKDYGN--VPAQMLLVPVQVN 556

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   E   ++++ E L+  G++ E FG + + +R +PA +   ++  ++ ++    +D  
Sbjct: 557 LTAAEKQALLQNSEMLNDAGLEVEDFGGSTVMVRAVPADVQVDDVEDMVVELASRFVD-G 615

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           +   L+++ E +L ++AC  +I++G +    EM  L + +        C HGRP  +K+ 
Sbjct: 616 SRDALREKTEWVLHSIACRAAIKAGDRTSDAEMLVLAQNILDGSIPPFCPHGRPCVLKIT 675

Query: 585 LSDIEKLFGR 594
             ++EK FGR
Sbjct: 676 RKELEKQFGR 685


>gi|329770225|ref|ZP_08261615.1| hypothetical protein HMPREF0433_01379 [Gemella sanguinis M325]
 gi|328837031|gb|EGF86675.1| hypothetical protein HMPREF0433_01379 [Gemella sanguinis M325]
          Length = 686

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 215/409 (52%), Gaps = 9/409 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LS ++ N+IAAGE++ERPS  +KEL+ENS+DA S+ ++ +I   G    +I DNG 
Sbjct: 3   KINILSAELSNKIAAGEVVERPSSVVKELVENSIDAGSTNIKIIIQEFGIKQIRIIDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++++++  A  RH TSKIS   D  +I T GFRGEAL SI +VS +T+ S       G 
Sbjct: 63  GISNDDLERAFLRHATSKISADYDLFHIETLGFRGEALASISSVSKVTIKSC-SGEVQGK 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + + G K+      A   GT + V +LF+  PARL +L++   E   IT+VI + A++Y
Sbjct: 122 MLILEGGKVVQSEFYAPIKGTDLSVENLFYNTPARLKYLRNPHTEQANITNVIHKFALSY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF         +K      +G+  + +S++       N ++ +  +++  + G+  +
Sbjct: 182 PNISFELHVDGKITFKTY---GDGDVHKILSKIYNMSVAKNMIDFSGSNDDYKVYGFISV 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R + N  ++FINGR +++  I ++I  AY   +   RYP+ V+ +E+DP  +DVNV
Sbjct: 239 PEETRASKNYIHIFINGRYIKNYVIQNSIIDAYGTLLMKNRYPLCVINIEMDPILLDVNV 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---SSVLSKKMISSFHQDNAPKTHLP 356
           HP K  +R      +   I + I + ++         ++VL+KK  S   + +       
Sbjct: 299 HPTKQEVRLSKEAELIRLIKEIIAERLSNYTYIPQGMNNVLTKKEKSRIEKLDFLSELDT 358

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
           K+         K  L++  ++ +D +  +D   SE+N  V +    +  
Sbjct: 359 KFGIEEDADISKKQLEDKIINEDDFIFGEDNLSSENNISVNDKNENNDN 407



 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 112/198 (56%), Gaps = 2/198 (1%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           +E++          AQI + YI+S+  + L ++DQHAA ER  +EK++++F+  K   + 
Sbjct: 489 DETKVRTLPDLKVLAQIFKTYILSEADNKLYLIDQHAAAERYNYEKLQREFSERKNYKKQ 548

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +L P + D    E A +  + E    LGI  E FG N+  +RE P  + +++  ++++ I
Sbjct: 549 MLIPLMFDFSVEEAAEVRNNLEKFEELGIVFEEFGDNSYVVREFPGWI-EEDEEEMIKII 607

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +++++ ++   T  +   + +A  +C  SI++ + +  +EMN+++ ++ +  N   C HG
Sbjct: 608 VEKVLKNNNI-TFNELRNDAIAMASCKMSIKANQILNEVEMNKVISDLYECKNPFTCPHG 666

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RP   K++  D+EK+F R
Sbjct: 667 RPIITKMEKKDLEKMFKR 684


>gi|58616937|ref|YP_196136.1| DNA mismatch repair protein MutL [Ehrlichia ruminantium str.
           Gardel]
 gi|58416549|emb|CAI27662.1| DNA mismatch repair protein MutL [Ehrlichia ruminantium str.
           Gardel]
          Length = 689

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 132/390 (33%), Positives = 218/390 (55%), Gaps = 8/390 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  + IN+IAAGE+IE P+  +KEL+ENS+DA+++ +   I  GG++   + D+G
Sbjct: 1   MSIVLLDSRTINRIAAGEVIECPASVVKELVENSIDAKATTINITIERGGRNLILVCDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  E++ +A  RH TSK+ D D + + + GFRGE L SI AVS + ++SR   ++T  
Sbjct: 61  IGIKKEDMEIAFVRHATSKLPDGDLTKVKSLGFRGEGLTSIAAVSKVKMVSRCQGSDTAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I I  GEK+  + P  ++ GT +EVRDLFF  P RL FLK+E+ E   I D++ ++A+ 
Sbjct: 121 SIEIEGGEKVQELIPNPLSCGTYIEVRDLFFATPNRLKFLKTEKAEVQSIIDMVNKLAMV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + F+        +K   Q +  +    I  ++G  F  N++ ++   + ITL GY G
Sbjct: 181 NHDIKFSLCIDSKQVFKYLKQQSEIDRLAEIK-ILGTGFYENSLPVHFVESMITLTGYVG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
           IPT +RG ++  Y F+NGR + D  ++  +R AY++ I   +YP+VVL + +   QVD N
Sbjct: 240 IPTLSRGKSSLIYTFVNGRPIYDNMLVGAVRYAYSDFIERDKYPIVVLYINMPYDQVDTN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP KS +RF++  +I   ++ +I+ A+  K  +       +  ++F  D   K ++ K 
Sbjct: 300 VHPNKSEVRFQDKRLIYKVVVNAIKNALAVKMNN-----KFRSDNNFSDDPFEKDNIAKV 354

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
             S  N+    FL  +    +     +  +
Sbjct: 355 KNSSVNSPSFQFLVPSSHEQSSENNKEQYS 384



 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 1/218 (0%)

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            +D+  S +          E +    Y LG A  Q+H  YII+QT DG+VIVDQHAAHER
Sbjct: 471 EHDIHLSLNAVPKSIGHKQENTLVDCYPLGYAICQVHSRYIIAQTKDGIVIVDQHAAHER 530

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEG-ECALIMEHDEDLHRLGIKAERFGPNAIA 496
           LI+E M+Q      +  Q LL PE++++  G +  L+ME+   L +LG+  E  G  ++ 
Sbjct: 531 LIYEYMKQVMEKEGVKRQILLIPEVVEMNNGCDLELLMEYKNKLLKLGLLIESLGDLSVI 590

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +RE+PA+    ++  L+  I+D I +   T  L ++I++I  T+ACY SIRSGRK++  E
Sbjct: 591 VREVPAVFGSFDVKALIFHILDSIAEVGDTLFLNNKIKDICGTIACYSSIRSGRKLKIEE 650

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR ME    S QCNHGRPT+IKL L +I+KLF R
Sbjct: 651 MNALLRNMENTSYSGQCNHGRPTYIKLSLLEIDKLFLR 688


>gi|170757624|ref|YP_001781347.1| DNA mismatch repair protein [Clostridium botulinum B1 str. Okra]
 gi|229890122|sp|B1IM67|MUTL_CLOBK RecName: Full=DNA mismatch repair protein mutL
 gi|169122836|gb|ACA46672.1| DNA mismatch repair protein MutL [Clostridium botulinum B1 str.
           Okra]
          Length = 666

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 118/341 (34%), Positives = 182/341 (53%), Gaps = 5/341 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G 
Sbjct: 3   KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +I  A   H TSKI+  +D   I T GFRGEAL SI +VS   L SR    N G 
Sbjct: 63  GIYPIDIKNAFLPHATSKINSIEDIYKISTMGFRGEALASISSVSKTKLKSRVDSYNFGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G KI  ++    N GT +EV DLF+ +PARL FLKS + +++ I+D++ R  +A+
Sbjct: 123 EIYIEGGKIEYLKDTGCNVGTTIEVSDLFYNVPARLKFLKSARSDSSSISDIVNRFILAH 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P +SF          K       GN  + I  V  +    N +      + I++ G+ G 
Sbjct: 183 PDISFNLINKGKQSIK---SYGTGNLKDSIRCVYNKTISENLINFESHKDIISVYGFIGK 239

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +R +     +F+N R V+ KFI + +  A+   + +  YP  V+ ++I P  +DVNV
Sbjct: 240 TEISRKSRTNQSIFVNKRYVKSKFITAAVENAFKSFLTVNSYPFFVIFIDIFPEYIDVNV 299

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP KS ++F++   +   I  ++ +AI  +   + +    K
Sbjct: 300 HPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFTNFFNK 340



 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + + L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 442 LQKDNKNPDTLYLNEHNTNSSSINIKENKPNNFYVDMKIIGQFNNTYILIEKDKELYIID 501

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 502 QHAAHEKVLFEKFKSEIEKGYVISQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVETF 561

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 562 GEYTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 620

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 621 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 664


>gi|317060759|ref|ZP_07925244.1| DNA mismatch repair protein mutL [Fusobacterium sp. D12]
 gi|313686435|gb|EFS23270.1| DNA mismatch repair protein mutL [Fusobacterium sp. D12]
          Length = 502

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 146/501 (29%), Positives = 244/501 (48%), Gaps = 32/501 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E + N IAAGE++E P+  +KEL+ENSLDA S  +   I  GG+ F +I D+G 
Sbjct: 3   KIHILEESVSNAIAAGEVVENPASLVKELLENSLDAGSKNIYLFIREGGR-FVEIRDDGV 61

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++V+RH TSKIS  +D   + ++GFRGEAL SI AVS L++ S    ++ G+
Sbjct: 62  GMSREDVLLSVERHATSKISKKEDLFALQSYGFRGEALSSIAAVSKLSITSCELGSSMGS 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G K++ ++      GT + ++DLFF  PARL FL+    E   I D++ + A+A 
Sbjct: 122 KMTVLGGKVTGIKDFPRTQGTDIVIQDLFFNTPARLKFLRKASTEYIQIKDIVLKEALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V              +  S+       I ++ G + + N  +           GY G 
Sbjct: 182 PEVKIRLEIDGKE----SIYSSGNGLENTILEIFGRNALKNLKKFAY--------GYVGN 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R + +  ++F+NGR V+ K I   I  +Y   +  G+YP   + L I   ++DVNV
Sbjct: 230 EKLYRSSRDSLFIFVNGRPVKAKLIEEAIIDSYYTKLMKGKYPFACVFLRIPASEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS-----------SFHQD 348
           HP+K  I+F N + + + +  SI++   ++   + +    K              +F + 
Sbjct: 290 HPSKKIIKFANASEVYSLVRNSIEEVFQEEKEFSFAQFEVKEEPRVLEIEKSTERNFREM 349

Query: 349 NAPKTHLPKYATSLTNTQ--EKLFLQENRLSTNDLLPSDDPTYSEDNDP----VEESEAT 402
              +  L +  +     Q  EK + QE +     L    +       D      EE  + 
Sbjct: 350 EREEEGLKQEFSWQEALQKEEKTYFQEEKTEKIPLFDLQNDKIPAIKDRRSFVEEERSSL 409

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +      AQI+  +++ +      I DQH  HER+++E++++ +    I  Q LL P  
Sbjct: 410 PHYDFKILAQIYDTFLLVERKGIFEIYDQHIIHERVLYEELKEKYYGHSIQKQQLLVPLR 469

Query: 463 IDLLEGECALIMEHDEDLHRL 483
           + L   E AL +    +LH L
Sbjct: 470 LSLDPREKALFLNMRNNLHFL 490


>gi|284006624|emb|CBA71885.1| DNA mismatch repair protein [Arsenophonus nasoniae]
          Length = 618

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 146/564 (25%), Positives = 244/564 (43%), Gaps = 59/564 (10%)

Query: 28  KELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFS 85
           KEL+ENSLDA +SR++  I  GG    +I DNG G+  E++ +A++RH TSKI+  +D +
Sbjct: 2   KELVENSLDAGASRIDIEIERGGAKLIRIHDNGSGIAKEDLTLALERHATSKIATLEDLA 61

Query: 86  NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEV 144
            I + GFRGEAL SI +VS L L SR        Q    G +++   +P A   GT VEV
Sbjct: 62  AIKSMGFRGEALASISSVSRLILTSRVETQTEAWQAYAEGREMNVTLKPAAHPIGTTVEV 121

Query: 145 RDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN 204
            DLF+  PAR  FL++E+ E + I +V+RR+A+A   V+           +     +   
Sbjct: 122 LDLFYNTPARRKFLRTEKTEFSHIDEVVRRIALARFDVAINLHHNGKLVRQYRATKSEEQ 181

Query: 205 FPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFI 264
           +  R++ + G  FI NA++L  +  ++ ++G+   P   +      Y ++NGR ++D+ I
Sbjct: 182 YERRLAAICGSTFIQNALKLGWQHGDLAIKGWITNPDLGKTV-EIQYCYVNGRMMRDRLI 240

Query: 265 LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
              IR AYA+  P  +    VL L IDP QVDVNVHPAK  +RF    ++ +FI Q +  
Sbjct: 241 NHAIRQAYADRQPDEQQAAYVLYLTIDPSQVDVNVHPAKQEVRFHQARLVHDFIYQGVNT 300

Query: 325 AINKKGISTSSVLSK-KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST----- 378
            ++++    + V    K  S        +    +   +  N ++ L ++E +        
Sbjct: 301 LLSQQQKQFNQVTIDLKQESHPVLGLQNRLAAGENFFASDNPKQDLVVEEQKAQVITELR 360

Query: 379 --NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
             N + PS+  ++S  N+     +  + + G    Q+ QN    Q    L    +    E
Sbjct: 361 ACNQISPSETTSFSCYNNGKITQKTYNKKQGELYQQLMQNEACEQEKIPLFPERKPIKTE 420

Query: 437 R----------------------------------------------LIFEKMRQDFNST 450
           +                                                 ++ +      
Sbjct: 421 KLAVKSVFVEKNDKNYTFGKILTIYSKNFAFIESSFGIGLLSLAEAERYLKRSQLIPTDK 480

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            + SQ LL P  + L E E          L  LG        N   I  +   L  +N+ 
Sbjct: 481 GLKSQPLLIPIKLALTEKEIETFYRVKVLLSTLGFDI-NISHNKATISAVSCPLRSQNLA 539

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIE 534
           +L   ++  +  +++    +  + 
Sbjct: 540 ELFPKLLKYLAQNTSCQVKELVVW 563


>gi|110667417|ref|YP_657228.1| DNA mismatch repair protein MutL [Haloquadratum walsbyi DSM 16790]
 gi|109625164|emb|CAJ51584.1| DNA mismatch repair protein MutL [Haloquadratum walsbyi DSM 16790]
          Length = 772

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/405 (30%), Positives = 197/405 (48%), Gaps = 10/405 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L  + + QIAAGE++ERP+  +KELIENSLDA+++R+   +  GG    +I D+G G
Sbjct: 8   ITALDTETVRQIAAGEVVERPASVVKELIENSLDADATRISVAVESGGADGIRIRDDGIG 67

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           M  + +  A++ H TSKI D  D ++ + T GFRGEAL +I AVS +T+ ++P   N G 
Sbjct: 68  MDEDAVQRAIKEHTTSKIDDINDLASGVGTLGFRGEALYTISAVSKMTIRTKPRDGNRGT 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G  +  V       GT+VE+RDLFF  PAR  FLK+   E + I  V+   A+A 
Sbjct: 128 ELHIEGGTVVDVEAAGCPEGTVVEIRDLFFNTPARRKFLKTTATEFDHINTVVTHYALAN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE----KSNEITLQG 235
           P V+ T        +     +  GN    +  V G +   + + +            ++G
Sbjct: 188 PDVAITLEHNDREVF---ATTGRGNLESAVLSVYGREVAESMISITTGDIESDRITAIEG 244

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P   R        FINGR V+ + +   I  AY + +   RYP  +L L+IDP  +
Sbjct: 245 LISHPEKTRSTRQYLSTFINGRYVEARALREAIINAYGDQLAANRYPFALLFLDIDPGSI 304

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHP K  +RF N T +R+ +  +I++A+   G+  S     +   +  +       +
Sbjct: 305 DVNVHPRKMEVRFDNETGVRDAVTNAIREALLSAGLIRSRAPRGQSAPAETEITQSSPDV 364

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              + +     +   + E  + T+      D    +      ++E
Sbjct: 365 TTKSANDDTNVDNNEITETSVHTSAEKSEPDNNIKKTTQAQSDAE 409



 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 10/253 (3%)

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
           H+D   +        +    Q K     + ++   +        +     VE   +    
Sbjct: 515 HKDAGEECDAVVSGNNHNKNQSKKADPNDSVNEQSVQHDLGGDVATLEPTVESLPS---- 570

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                 QI + YII+++ DGLV++DQHAA ER+ +E+++     T +T+Q L  P  I+L
Sbjct: 571 -LRILGQIDETYIIAESDDGLVLIDQHAADERINYEQLQATLAET-VTTQALAEPVKIEL 628

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE----II 521
             GE A + E+ + L R+G +      + I +  +PA  +    P L+RD++ E    + 
Sbjct: 629 TAGESAQVEEYADALERVGFRVTDGDGDNIVVTAVPAAFASALDPALVRDVLAETAESLN 688

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
               + T++   ++ILA +ACY S+     +       LL +++   N   C HGRP  I
Sbjct: 689 SHDRSETIKTLTDDILADLACYPSLTGNTALTEGSTVNLLEQLDTCENPYACPHGRPVLI 748

Query: 582 KLKLSDIEKLFGR 594
           +   ++++  F R
Sbjct: 749 EFDRTELDARFER 761


>gi|120603501|ref|YP_967901.1| DNA mismatch repair protein MutL [Desulfovibrio vulgaris DP4]
 gi|120563730|gb|ABM29474.1| DNA mismatch repair protein MutL [Desulfovibrio vulgaris DP4]
          Length = 711

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 202/365 (55%), Gaps = 9/365 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ +E  +  GG+S+  + D+G G
Sbjct: 13  IQVLPPELRNQIAAGEVVERPASVVKELVENSLDAGATAIEVALEDGGQSYIMVRDDGHG 72

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG-- 118
           + ++E+ +AV RH TSK+++  + + I +FGFRGEALPSI +VS   + S       G  
Sbjct: 73  IPADELELAVTRHATSKVTNLAELARIMSFGFRGEALPSIASVSRFAMTSAHAAAEGGTV 132

Query: 119 -AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +I +   ++ +  P A++ GTIVEVR+LF  IPARL F+K++  ET    ++  R+A+
Sbjct: 133 ATRIEVEHGRVLASGPAALHRGTIVEVRELFANIPARLKFMKTQATETKRCQELFARIAL 192

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P ++FT S   + R ++          +R+  +     +      +  +  + + G  
Sbjct: 193 ARPDIAFTLS---AGRRELLRFPAGQTLRQRLGTLWPPAVVETLYAFDRTTGTVRVHGLA 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   ++  +++NGR V D+ +L  +R AY   +    YP VVL L+IDP +VDV
Sbjct: 250 ADPRGAQPRPDRLLLYVNGRAVNDRLLLKAVREAYKGRLLAREYPQVVLFLDIDPEEVDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RFR+   +   +++++  A+ +         ++     F     P      
Sbjct: 310 NVHPAKNEVRFRDEREVFVAVLRAVGDAV-EASAQGIPDETEPGTDPFAAPLRPVPPAAP 368

Query: 358 YATSL 362
           +A  L
Sbjct: 369 HARPL 373



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 409 ACAQIHQNYIISQT-TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
              QI   Y++ +   D LV+VDQHAAHER++  ++R+   +       L  P  + L  
Sbjct: 535 YLGQIADTYLVLRHGNDQLVLVDQHAAHERVLHARLRRGGMAGGGQ--LLALPIELPLHP 592

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E   +   D+DL  LG +    G   + +R +P +L +      LR+ +          
Sbjct: 593 AELERLRLLDDDLRALGFECSTSGQ-TLRVRAMPPVLDRAGATSFLREALA--------- 642

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
             ++ ++++ A MAC  +I++G+ +   E   LL +    P    C HGRP  ++    +
Sbjct: 643 GRRENLDDLWAMMACKAAIKAGQHLTPDEAAGLLAQWLATPEHDFCPHGRPAVLRFNPGE 702

Query: 588 IEKLFGR 594
           +E++F R
Sbjct: 703 LERMFKR 709


>gi|332654853|ref|ZP_08420595.1| DNA mismatch repair protein HexB [Ruminococcaceae bacterium D16]
 gi|332516196|gb|EGJ45804.1| DNA mismatch repair protein HexB [Ruminococcaceae bacterium D16]
          Length = 678

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/340 (31%), Positives = 181/340 (53%), Gaps = 6/340 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+ L   + + IAAGE++ERP+   KEL+EN++DA +S+V   I+ GG +F ++TD+
Sbjct: 5   MPTIQVLDSHVADLIAAGEVVERPASVAKELMENAIDAGASKVTVEISHGGLTFLRVTDD 64

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+ + E+  A  RH TSK+    D   I T GFRGEAL +I AVS + +M+R      
Sbjct: 65  GKGIPAGELKTAFLRHATSKLRTAYDLEAIGTLGFRGEALAAISAVSRVEVMTRTADAPL 124

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           GA +++ G     +       GT + VRDLF+  PARL F+K +  E   +  V++R+A+
Sbjct: 125 GASLSLEGGVPGEIEEAGCPLGTTMVVRDLFYNTPARLKFMKKDSAEGAAVFAVVQRVAL 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           ++P+VS  F        +      +G     +  V+G +      E+    + I + G+ 
Sbjct: 185 SHPEVSVKFIRDGK---QELLTPGDGALQSAVYAVLGRELALGFREVKSGGDGIKVTGFV 241

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   R + N  + F+NGR V+ + +++ +  AY     +G++P  VL +E+   QVDV
Sbjct: 242 SQPACCRASRNWQFFFVNGRQVKSRLLMAALEQAYQNQKMVGKFPACVLHVEVKLSQVDV 301

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
           NVHPAK+ ++F +   + N +  ++   +        +  
Sbjct: 302 NVHPAKTEVKFGSEREVFNAVYHAVLSVLEGDRSHPQATF 341



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 119/268 (44%), Gaps = 6/268 (2%)

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
              +     L  K+     +       L K+A  + +  +   + E   +        + 
Sbjct: 415 DNSVHPVENLVDKVDKIPQETLLNSKKLEKHAQVIPSEPQPQPIPEPVATPEPKDEPVEK 474

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
                   +E       +      ++   YII +  D ++++D+HAAHER+ F++M+   
Sbjct: 475 PVHMPEPEIEAEPVPEVEPWRLAGEVLNTYIIVEQGDKILLIDKHAAHERMNFDRMKA-- 532

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKK 507
              +  +QTLL+P I  L   E A+++ +   L   G + + FG  A+A+RE P  L  +
Sbjct: 533 QGHQAMAQTLLSPAICRLAPEEQAVLLSNLSLLEEFGFQVDDFGGGALAVREAPDYLDVE 592

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE-MEK 566
           +IP  L  +  +++ +        R + +L TMAC  +I+ G K    E+ R+ +  M+ 
Sbjct: 593 DIPDTLSQLAQKLLTTGHADPAAAR-DELLHTMACKAAIKGGWKTSPQELERVAQAVMDG 651

Query: 567 NPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +     C HGRP  I+L   ++EK F R
Sbjct: 652 SVK--YCPHGRPVAIELTRKELEKQFKR 677


>gi|56416596|ref|YP_153670.1| DNA mismatch repair protein [Anaplasma marginale str. St. Maries]
 gi|56387828|gb|AAV86415.1| DNA mismatch repair protein [Anaplasma marginale str. St. Maries]
          Length = 394

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 128/363 (35%), Positives = 199/363 (54%), Gaps = 9/363 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L  K +N+IAAGE+I+ P+  +KEL+ENS+DA ++ +  +I  GG++   + D+G 
Sbjct: 7   PIVVLDAKTVNKIAAGEVIDCPASVVKELVENSIDAGATTINVLIDKGGRNLISVIDDGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+  +E+  A   H TSK+ D D +NI + GFRGE L SI AV+   ++S+         
Sbjct: 67  GIPRDEMERAFICHATSKLPDNDLNNIRSMGFRGEGLTSIAAVARTKMVSKYRGCTEAWS 126

Query: 121 IAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           I +  GEK   + P A+  GT +EVRDLFF  P RL FL++E+ ET  I D++ R A A 
Sbjct: 127 IVLEGGEKTRDLSPEALPCGTSIEVRDLFFATPTRLKFLRTEKAETQSIVDLMYRFATAR 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGYT 237
              +F+ +      +K        +   R+ ++   G+ F   ++E+   S+ I + GY 
Sbjct: 187 FSTAFSLTIADKQIFKYPA---REDLMSRLWEMKPFGDAFREQSLEVRFHSDAINITGYI 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +PTFNR   +  Y F+NGR V     +  I++AY+E IP  R+PVVV+ +EI P  VDV
Sbjct: 244 SVPTFNRSRPDMIYTFVNGRPVHSTLFMGAIKSAYSEFIPRDRHPVVVMCMEILPGDVDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS--TSSVLSKKMISSFHQDNAPKTHL 355
           NVHP+K  +RFRN   + + +++++  A++                +  F  DN P    
Sbjct: 304 NVHPSKLEVRFRNRKQVYSVVVEALATALSSNVYRELPPRTPVGGGLDHFAVDNTPVLDT 363

Query: 356 PKY 358
           P Y
Sbjct: 364 PHY 366


>gi|298160978|ref|NP_001165838.1| DNA mismatch repair protein Mlh1 [Sus scrofa]
 gi|285818446|gb|ADC38896.1| mutL-like protein 1 [Sus scrofa]
          Length = 757

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 126/530 (23%), Positives = 218/530 (41%), Gaps = 22/530 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+ + ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVAITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVECEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S +      +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESRLLGSNASRTYFTQTLLPGLTGPSGEAVKSAAD 365

Query: 358 YATSLTNTQEKLFLQE------NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
              S T + +K++  +           +  L     + S     +   + T      A  
Sbjct: 366 VTPSSTGSGDKVYAYQMVRTDCREQKLDAFLQPASKSLSSQPQAIVPEDRTDAFGSEARQ 425

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
              Q+  + +      +  +H + E    E+           S      +          
Sbjct: 426 ---QDEEMLELPAPSEVAAKHQSLEEDTAERTSDLSEKRGPPSSPGNPRKRHRESSDVEM 482

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP--QLLRDIIDE 519
           +   + +++    I         I +  +  +  + N    + LR+++  
Sbjct: 483 VEDANRKEMTAACI----PRRRIINLTSVLTLQEEINERGHETLREMLHN 528


>gi|257457433|ref|ZP_05622603.1| DNA mismatch repair protein [Treponema vincentii ATCC 35580]
 gi|257445162|gb|EEV20235.1| DNA mismatch repair protein [Treponema vincentii ATCC 35580]
          Length = 716

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 137/670 (20%), Positives = 250/670 (37%), Gaps = 86/670 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            ++ L  +   +IAAGE+++RP+  I+EL++N+LDA +S+++  IAGGG    ++TDNG 
Sbjct: 55  PVKALDPETARKIAAGEVVDRPAAVIRELLDNALDAGASKIQVEIAGGGIERIRVTDNGC 114

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ +    H TSKIS  +D  ++H+ GFRGEAL SI AVS L + S         
Sbjct: 115 GMSREDLAICTDTHTTSKISTAEDLLSLHSLGFRGEALSSIKAVSDLEITS-TRDGPAAW 173

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     ++  ++P  +  GT+V V +LF   PAR  FLK    ET L   +    A+ +
Sbjct: 174 KL-----QLGKIQPARLPAGTVVLVENLFENFPARKQFLKRAAAETALCRTIFLDKALPH 228

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
            +    F      R+ +            ++    ++      E+       + +   G 
Sbjct: 229 YQTEMRFIADGELRFLLP--PAKSLRERCLAAFSFKEPEALFFEIEGSGEHFSFRIVLGS 286

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               R +     VF+NGR + +  +   +        P G +PV  L L + P +VD N+
Sbjct: 287 SDVVRSDKRAILVFVNGRRITEFGLTQAVEYGSEGYFPNGGHPVAFLFLTVAPSRVDFNI 346

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST----------SSVLSKKMISSFHQDN 349
           HPAK   RF++ + I + +  ++     +  +++          +     +   S H D 
Sbjct: 347 HPAKKEARFQDYSAIHHAVSSAVGSFYRQHTVASLLKEKYDPGLTRPFDFRSGGSLHSDT 406

Query: 350 APKTHLPKYATSLTNTQEKLFL-QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
              +     A ++     +    Q             +         V++  A +     
Sbjct: 407 GRASGTDGQAGTIGGISFRPNAGQAGGQDAAPYSVWSEQNRLYAESLVQKHRAVNGNYPP 466

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
              ++   Y I +   G++     +A  ++             I                
Sbjct: 467 PSDRVKNRYEIPEENTGVLSDGYGSAVRQIAAAAAVSYTAGGHIIPPPAAVGSSYTDEAP 526

Query: 469 ECALIMEHDE-DLHRLG--------------------------IKAERFGPNAIAIRE-- 499
                 +    D   LG                          I  ++   N   ++E  
Sbjct: 527 YMQPPPDIPPADFKLLGQVAGTFIAVEKHDALYLIDQHAAHERIIFDQLKHNTGGVQELL 586

Query: 500 IP--AILSKKNIPQLL---RDII----DEIIDSST------------TYTLQDRIENI-- 536
           IP   I + +     +   R+++      + D               T T +D I +I  
Sbjct: 587 IPYRIITASEEDDSFIRKHRELLCKAGFALSDEGAGVWQVTAVPARWTGTERDLIRDITG 646

Query: 537 ------------LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
                       LA+ AC  + +    +  +   R+  +  + P    C HGRP +I L 
Sbjct: 647 VRKNAGDILYQILASAACRSACKDHAILDPVTQQRIAAQAFELPEP-ICPHGRPIWIILT 705

Query: 585 LSDIEKLFGR 594
             ++ K   R
Sbjct: 706 REELFKRVKR 715


>gi|46578899|ref|YP_009707.1| DNA mismatch repair protein MutL [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448311|gb|AAS94966.1| DNA mismatch repair protein MutL, putative [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232757|gb|ADP85611.1| DNA mismatch repair protein MutL [Desulfovibrio vulgaris RCH1]
          Length = 744

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 204/365 (55%), Gaps = 9/365 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ +E V+  GG+S+  + D+G+G
Sbjct: 13  IQVLPPELRNQIAAGEVVERPASVVKELVENSLDAGATAIEVVLEDGGQSYIMVRDDGYG 72

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMS---RPPQNNT 117
           + ++E+ +AV RH TSK+++  + + I +FGFRGEALPSI +VS   + S   +      
Sbjct: 73  IPADELELAVTRHATSKVTNLAELARIMSFGFRGEALPSIASVSRFAMTSAHAKAEGGTV 132

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +I +   ++ +  P A++ GTIVEVR+LF  IPARL F+K++  ET    ++  R+A+
Sbjct: 133 ATRIEVEHGRVLASGPAALHRGTIVEVRELFANIPARLKFMKTQATETKRCQELFARIAL 192

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
           A P ++FT S   + R ++          +R+  +     +      +  +  + + G  
Sbjct: 193 ARPDIAFTLS---AGRRELLRFPAGQTLRQRLGTLWPPAVVETLYAFDRSTGTVRVHGLA 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P   +   ++  +++NGR V D+ +L  +R AY   +    YP VVL L+IDP +VDV
Sbjct: 250 ADPRGAQPRPDRLLLYVNGRAVNDRLLLKAVREAYKGRLLAREYPQVVLFLDIDPEEVDV 309

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHPAK+ +RFR+   +   +++++  A+ +         ++     F     P      
Sbjct: 310 NVHPAKNEVRFRDEREVFVAVLRAVGDAV-EASAQGIPDETEPGTDPFAAPLRPVPPAAP 368

Query: 358 YATSL 362
           +A  L
Sbjct: 369 HARPL 373



 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 409 ACAQIHQNYIISQT-TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
              QI   Y++ +   D LV+VDQHAAHER++  ++R+   +       L  P  + L  
Sbjct: 568 YLGQIADTYLVLRHGNDQLVLVDQHAAHERVLHARLRRGGMAGGGQ--LLALPIELPLHP 625

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E   +   D+DL  LG +    G   +++R +P +L +      LR+ +          
Sbjct: 626 AELERLRLLDDDLRALGFECSTSGQ-TLSVRAMPPVLDRAGATSFLREALA--------- 675

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
             ++ ++++ A MAC  +I++G+++   E   LL +    P    C HGRP  ++    +
Sbjct: 676 GRRENLDDLWAMMACKAAIKAGQRLTPDEAAGLLAQWLATPEHDFCPHGRPAVLRFNPGE 735

Query: 588 IEKLFGR 594
           +E++F R
Sbjct: 736 LERMFKR 742


>gi|317037205|ref|XP_001398763.2| DNA mismatch repair protein Mlh1 [Aspergillus niger CBS 513.88]
          Length = 723

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 221/501 (44%), Gaps = 14/501 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIRALDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSIEILVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKQFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 149

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +   S  K+S + +  A   GT + V DLF+ +P R    +S   E   I DV+ R ++ 
Sbjct: 150 RAHYSDGKLSAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDVVGRYSVH 209

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGY 236
              V+F+      +   ++      N  +RI Q+ G    N  V+ N +  +      G+
Sbjct: 210 CSGVAFSCRKHGDSGVSVST-PAAANTIDRIRQIHGSAVANELVKFNVEDEKLGFRSSGF 268

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                ++        +FIN R+V+   I   +   Y+  +P G +P V + LEI+P++VD
Sbjct: 269 ATNANYH-VKRTTILLFINHRSVESTAIKRAVEQTYSSFLPKGGHPFVYIDLEIEPQRVD 327

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-----TSSVLSKKMISSFHQDNAP 351
           VNVHP K  + F N   I   I   I+  + +   S      + +     +   ++D   
Sbjct: 328 VNVHPTKREVNFLNEDEIIECICNEIRSKLAQVDSSRTFLTQTLLPGVTTMEPANRDPEG 387

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
              +PK  ++     E   ++ +             T         ++      L     
Sbjct: 388 TDTVPKTPSTTKKPYEHNLVRTDSKVRKITSMLTPATPHTPTASQADTTVLDEGLQYETT 447

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
               + I   +   L    ++A H   + E +        +  +  +      +      
Sbjct: 448 SREPHRISFTSVKNLRASVRNAMH-NTLTETIASHTYVGLVDERRRIAAIQSGVKLYLID 506

Query: 472 LIMEHDEDLHRLGI-KAERFG 491
             M   E  +++G+     FG
Sbjct: 507 YGMFCTEFFYQIGLTDFANFG 527


>gi|301112887|ref|XP_002998214.1| mismatch repair endonuclease pms1, putative [Phytophthora infestans
           T30-4]
 gi|262112508|gb|EEY70560.1| mismatch repair endonuclease pms1, putative [Phytophthora infestans
           T30-4]
          Length = 686

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 125/667 (18%), Positives = 248/667 (37%), Gaps = 88/667 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
             L  + + +I +G+ +   + A+KEL+EN+LDA ++++E  +   G+  F+++DNG G+
Sbjct: 8   HVLDRRDVQRICSGQSVVDLATAVKELVENALDAGATQIEVKLKEFGRDAFEVSDNGAGV 67

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA- 119
             E      ++H TSKIS  +D   + +FGFRGEAL SI  + +  T+ +R   +  G  
Sbjct: 68  APENYASLARKHYTSKISSFEDIETVASFGFRGEALSSICELAASFTVCTRTQNDAVGTL 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIA 178
            +  +   +      A   GT V V +LF  +  R    K + +     +  V++  A++
Sbjct: 128 LMYDASGALVKETKKARPTGTTVAVEELFKPLAVRYKDFKRNIKKHYAKLLKVLQAYAVS 187

Query: 179 YPKVS---FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-------ELNEKS 228
              V    F  +   S+R+ +     +    E I+ V G  F    +       E N   
Sbjct: 188 CANVKICVFNITGKNSSRHVVLATQAHQTMGENIANVFGTKFFRTLIRSSTTETEDNLSG 247

Query: 229 NEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
            E  ++GY        G +  ++ + FINGR      +  T+   + +     + P  +L
Sbjct: 248 QERKVEGYVSKVGAGVGRSDNDRQFFFINGRPFDLPKMAKTLNEVWRQYEM-KQKPACIL 306

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII-------------QSIQKAINKKGIST 333
              +     DVNV P K     ++   I +                 ++Q  +       
Sbjct: 307 NFLLPLGDYDVNVTPDKRETFVKHEAEIIDAFKTGINKLYEPSRGTFTVQPLLTAFAQRF 366

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSL--------TNTQEKLFLQENRLS----TNDL 381
            +   K +I    Q    +      ++          +  ++KL+      +      + 
Sbjct: 367 PAQKPKPVIVEILQPRNQRGAASAPSSPEQILLDLRKSAKRQKLYSPLPSQAILSTPEEH 426

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS------QTTDGLVIVDQHAAH 435
             S D    +     EE      +      ++ +    S      +T + +         
Sbjct: 427 AWSFDEMIKQRQQYFEEEVEYERKRKTNRLKVPKTCSTSVDDNALETDNEVAAAALQRVL 486

Query: 436 ERLIFEKMR---------------------------------QDFNSTKITSQTLLTPEI 462
           ++  F++M+                                     +T +  Q L+ P  
Sbjct: 487 KKEDFKRMQVLGQFNLGFIIGKLGNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLR 546

Query: 463 IDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           ++L  GE  +I++H     + G       +      + +  +P     +   + +R++  
Sbjct: 547 LELTAGEEMVILDHLGVFTKNGFTFLVDKDAPATKKLKLLSLPFTKHTQFGTEDIRELAS 606

Query: 519 EIID--SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
            ++D   +T+     ++  + A+ AC  SI  G  +   EM +++R +        C HG
Sbjct: 607 LLMDAPMNTSTIRLPKVMAMFASRACRSSIMIGTALHKEEMQKIVRNLSGLDQPWNCPHG 666

Query: 577 RPTFIKL 583
           RPT   L
Sbjct: 667 RPTLRHL 673


>gi|119174382|ref|XP_001239552.1| hypothetical protein CIMG_09173 [Coccidioides immitis RS]
          Length = 775

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 114/408 (27%), Positives = 193/408 (47%), Gaps = 15/408 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG 
Sbjct: 28  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGATAVEILVKDGGLKLLQITDNGH 87

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 88  GIDSEDLPILCERFTTSKLKAFEDLSSIATYGFRGEALASISHIAHLTVTTKTAGSSCAW 147

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +P A   GT + V DLF+ +P R    +S   E   I D+
Sbjct: 148 RAHYRDGKLVPAKPGQSAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDI 207

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-- 229
           + R A+    VSF+      +   ++    N +  +RI Q+ G    N  +  + + +  
Sbjct: 208 VGRYAVHCNGVSFSCKKHGDSGVSVST-PVNSSTIDRIRQIHGSAVANELIPFDVEDSAL 266

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   I   +   Y+  +P G +P   L +E
Sbjct: 267 GFRASGFASNANYH-AKRTVILLFINHRSVESSGIRKAVEQTYSAFLPKGGHPFAYLNIE 325

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P +VDVNVHP K  + F N   I   I  +++  +     S+ + +++ ++   H   
Sbjct: 326 IEPHRVDVNVHPTKREVNFLNEDEIIELICNAVRTKLANVD-SSRTFMTQTLLPGIHPSG 384

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            P         ++        +  ++    + L   D    +      
Sbjct: 385 TPPADTSSPRATIEGKVPLRTVAGSKRPYENNLVRTDVKMRKITSMFP 432


>gi|50732924|ref|XP_418828.1| PREDICTED: similar to DNA mismatch repair protein homolog [Gallus
           gallus]
          Length = 757

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 109/329 (33%), Positives = 172/329 (52%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    Q+ DNG G
Sbjct: 8   IRRLDEAVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQVQDNGCG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLHIVCERFTTSKLQKFEDLASISTYGFRGEALASISHVAHVTVTTKTADAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  KI    +P A N GT + V DLF+ +  R   LK+   E   I +V+ R AI  
Sbjct: 128 ASYSDGKIKAPPKPCAGNQGTQIMVEDLFYNVNTRRKALKNPSEEYAKILEVVGRYAIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +   S N    + I  + G       +E+  +       ++GY 
Sbjct: 188 SGISFSVKKQGDTVSDVRTLS-NATTVDNIRSIFGNAVSRELIEVGCEDANLAFKMKGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 TNANYSVKKCIFL-LFINHRLVESTALRKAIETVYAAYLPKSTHPFLYLSLEIAPKNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q ++  +
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHVESKL 334


>gi|323143738|ref|ZP_08078406.1| DNA mismatch repair protein, C-terminal domain [Succinatimonas
           hippei YIT 12066]
 gi|322416451|gb|EFY07117.1| DNA mismatch repair protein, C-terminal domain [Succinatimonas
           hippei YIT 12066]
          Length = 650

 Score =  316 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 5/345 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LS ++ NQIAAGE++ERPS  +KEL+EN++DA+++++   +   GK+  ++ DNG
Sbjct: 1   MPIRRLSVQLANQIAAGEVVERPSSVVKELLENAVDAKATKIVCDLKNSGKTLIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+P+A+  H TSKI+  +D   I T GFRGEAL SI AVS LTL SR    +  
Sbjct: 61  QGIPHEELPLALAPHATSKIATLEDLEAILTLGFRGEALASIAAVSKLTLTSRTKDEDHA 120

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             + +   ++   + P A   GT VEV +LFF  PAR  FL+S++ E   I ++  R A+
Sbjct: 121 FSVEVEGPQQDPEINPAAHPVGTSVEVCELFFNTPARRRFLRSDRTEFMHIREIFVRTAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFP-ERISQVIGEDFINNAVELNEKSNEITLQGY 236
           A P + F  +    N   +     +      R+S++ G DF  N + +  +   + + G 
Sbjct: 181 ANPDIDFELNLDGKNVVNVKAVMGDEKKRLVRLSKLAGSDFNRNGIFVRGEDPCLNVSGV 240

Query: 237 TGIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
              P     +A    ++F+NGR + DK +   ++ AY+E          VL L  DP +V
Sbjct: 241 LLPPPDVEESAVENIFLFLNGRPIADKVLTHALKQAYSEVAGRSCPVRCVLYLNCDPHEV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           D+NVHP K  +RF    ++ + +++++  ++ K+  S    L K+
Sbjct: 301 DINVHPRKDEVRFHEARLVHDVLLETVANSLRKELRSVDDGLKKE 345


>gi|262196403|ref|YP_003267612.1| DNA mismatch repair protein MutL [Haliangium ochraceum DSM 14365]
 gi|262079750|gb|ACY15719.1| DNA mismatch repair protein MutL [Haliangium ochraceum DSM 14365]
          Length = 762

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 204/399 (51%), Gaps = 10/399 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + +++QIAAGE++ERP+  +KEL+EN+LDA ++ V   +  GGK   ++ DNG G
Sbjct: 22  IRVLPDTVVDQIAAGEVVERPASVVKELVENALDAHATHVNVEVEAGGKQLIRVLDNGIG 81

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT  ++ +A+ RH TSK+   DD   + T GFRGEALPSI AVS +++ +R      G +
Sbjct: 82  MTESDVRLALTRHATSKLRALDDLYGLGTMGFRGEALPSIAAVSRMSITTRTRGQVAGTK 141

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + I G +I+ +  V    GT +E+RDL F +PARL FLK    E + +TD + ++A+ +P
Sbjct: 142 LDIEGGRITQISEVGAPVGTHIEIRDLLFNVPARLKFLKGNATEASHVTDSVAKLAMVHP 201

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V            +      + +  ER   ++G        E++   N + +  Y   P
Sbjct: 202 QVHVRLRHGGRVALE---APQHSSGLERARAILGSRLGRELHEVSGAENGVRVTAYLAAP 258

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              +  +   Y+F+  R V+D+ +L  +   Y E +P GR+PV VL LE+   +VDVNVH
Sbjct: 259 DLAQSTSRSTYLFVGKRAVKDRGLLHAVSMGYGELVPKGRFPVAVLCLEVPGGEVDVNVH 318

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +RF +   +   +   +++     G++ +  LS++   S  +  A     P   +
Sbjct: 319 PQKLEVRFSDGPAVFAAVRHVLRR-----GVAEAPWLSEQQSGSPVRMRAKAHVSPPRES 373

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +      +L  ++   +   LLP               +
Sbjct: 374 AGGGRASRLAERQAAGAARMLLPFGRDAAQPGASWQPPA 412



 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 112/200 (56%)

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
            V    +  +       Q+ + Y++ ++   +V+VDQHAAHER+ F+++R  +    +  
Sbjct: 563 HVPRDPSRFFTELSYIGQLDRTYLVCESNGEMVLVDQHAAHERVAFQRLRDRWAQHAVPV 622

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P+  DL   + A+  +    LH +G + E FG    A++ +PA L + ++  +L 
Sbjct: 623 QRLLLPKTFDLSPEQAAVAEDARATLHDMGFELEHFGGTTYALKALPAGLRESDVETVLH 682

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +++D++ +   +  L++R++  LAT+AC+  +R+G  + + E+  L + +++    + C 
Sbjct: 683 ELLDDLAERGGSRALEERLDLALATIACHSVVRAGDALSAQEVRALFKSLDEVDFKAHCP 742

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP  +++ + +I + FGR
Sbjct: 743 HGRPVLLRISVDEIARRFGR 762


>gi|73666847|ref|YP_302863.1| DNA mismatch repair protein MutL [Ehrlichia canis str. Jake]
 gi|72393988|gb|AAZ68265.1| DNA mismatch repair protein MutL [Ehrlichia canis str. Jake]
          Length = 682

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 127/351 (36%), Positives = 207/351 (58%), Gaps = 3/351 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  + IN+IAAGE+IE P+  +KEL+ENS+DA ++ ++  I  GG++   ++DNG
Sbjct: 1   MSIILLDPRTINRIAAGEVIECPASVVKELVENSIDANATTIDVAIERGGRNLIVVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  E+I +A  RH TSK+ D D + + + GFRGE L SI AV+ + ++S+   ++T  
Sbjct: 61  IGIKKEDIEIAFARHATSKLPDGDLAKVKSLGFRGEGLTSIAAVAKVKMISKYQDSDTAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            I    G+K   + P +++ GT +EVRDLFF  P RL FLK+E+ E   I D+I ++A+ 
Sbjct: 121 LIVFEGGDKTQELTPDSLSCGTYMEVRDLFFATPNRLKFLKTEKAEVQSIIDMINKLAMV 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + F+ S      +K   Q +N +    I  + G +F  N++ ++ K  +I L GY G
Sbjct: 181 NHGIMFSLSVDNKQVFKYLRQQSNIDRLSEIKAL-GIEFCKNSLPISVKEEQIELSGYIG 239

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            PT +R  ++  Y F+NGR V D  ++  +R AY++ I   +YPVVVL L I   QVD N
Sbjct: 240 SPTLSRSKSSLIYTFVNGRPVYDSLLIGAVRYAYSDFIERDKYPVVVLYLNIPCDQVDSN 299

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           VHP KS +RF++  ++   ++ +I++ ++    +    +++     F +DN
Sbjct: 300 VHPNKSEVRFQDKKLVYRVVVNAIKEVLSINMNAKLKSINEFESDHFVRDN 350



 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 1/220 (0%)

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
           +S +  L +D  +          S   ++ LG A  QIH  YI+SQT D ++IVDQHAAH
Sbjct: 462 VSGSMGLENDKLSQVSYKKIENGSLIDNHLLGYALCQIHSRYIVSQTQDAIIIVDQHAAH 521

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC-ALIMEHDEDLHRLGIKAERFGPNA 494
           ERL +E M+Q      I  Q LL PE+I++       L++E+   L +LG+  E  G  +
Sbjct: 522 ERLTYEYMKQVMEKEGIKRQMLLIPEVIEMNNHLDLELLVEYKAKLLKLGLLIEPLGNLS 581

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
           + +RE+PAI    ++  L+ +I+D II+   T  L D+I++I  T+ACY SIRSGRK++ 
Sbjct: 582 VIVREVPAIFGSFDVKSLIINIVDSIIEVGDTLFLDDKIKDICGTIACYSSIRSGRKLKI 641

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            EMN +LR ME   +S QCNHGRPT+++L L +++KLF R
Sbjct: 642 EEMNAILRSMENTAHSGQCNHGRPTYVELSLVELDKLFAR 681


>gi|296532257|ref|ZP_06895000.1| DNA mismatch repair protein MutL [Roseomonas cervicalis ATCC 49957]
 gi|296267415|gb|EFH13297.1| DNA mismatch repair protein MutL [Roseomonas cervicalis ATCC 49957]
          Length = 332

 Score =  316 bits (809), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 129/328 (39%), Positives = 200/328 (60%), Gaps = 7/328 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS    ++IAAGE++ERP+ A+KEL+EN+LDA +++V   + GGG S   + D+G 
Sbjct: 3   RIRLLSATTADRIAAGEVVERPAAAVKELVENALDAGATQVFVALEGGGVSRILVEDDGQ 62

Query: 62  GMTSEEIPMAVQRHCTSKISDD--FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+  ++ + ++RH TSK+ ++     I T GFRGEALPSIGAV+ LTL SR P      
Sbjct: 63  GMSPADLALCIERHATSKLPEEAALFRIATLGFRGEALPSIGAVARLTLTSRVPGGE-AF 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G   S +RP A  PGT VEVRDLF+  PAR  FLK+   E+    + ++R+A+A+
Sbjct: 122 RIDVEGGAKSEIRPAAGAPGTRVEVRDLFYATPARRKFLKTPATESGHAVEAVKRLALAW 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F           +       +   R+  ++G +F   AV ++    E+ LQG+ G+
Sbjct: 182 PEVGFRMEVEGRTVLNLAA----SDRRTRLDALLGPEFARAAVTVSGGREELALQGFAGL 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           PT  R  A++ ++ +N R V+D  + + +R AY + I  GR+PV  L LE+ P  VDVNV
Sbjct: 238 PTLTRATASEQHLVVNRRPVRDPLLRAALRVAYRDLIAPGRHPVAALFLELPPELVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           HP K+ +RFR+   +R  +I ++++A+ 
Sbjct: 298 HPMKTELRFRDAAAVRGALISALRRALA 325


>gi|301757691|ref|XP_002914683.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Ailuropoda
           melanoleuca]
          Length = 757

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/486 (24%), Positives = 205/486 (42%), Gaps = 10/486 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ANYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +    +     + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLPS-ATRVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESASLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S        +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGSSVEVVKSTTG 365

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT---HYQLGIACAQIH 414
              S T + +K++  +   + +     D            + +A          +     
Sbjct: 366 VTPSSTGSGDKVYAHQMVRTDSREQKLDAFLQPMSKALSSQPQAIVPEDRTDASSGGAGQ 425

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           Q+  + +  +   +   +   E  + E   +       +S      +          +  
Sbjct: 426 QDEEMLELPEPAHVAATNQGTEVDVTEGTSEMSEKRGPSSSPGNPRKRPRESSDVEMVED 485

Query: 475 EHDEDL 480
           +  +++
Sbjct: 486 DSRKEM 491


>gi|320037401|gb|EFW19338.1| DNA mismatch repair protein mutL [Coccidioides posadasii str.
           Silveira]
          Length = 777

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/408 (27%), Positives = 194/408 (47%), Gaps = 15/408 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG 
Sbjct: 28  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGATAVEILVKDGGLKLLQITDNGH 87

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 88  GIDSEDLPILCERFTTSKLKAFEDLSSIATYGFRGEALASISHIAHLTVTTKTAGSSCAW 147

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +P A   GT + V DLF+ +P R    +S   E   I D+
Sbjct: 148 RAHYRDGKLVPAKPGQSAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDI 207

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-- 229
           + R A+    VSF+      +   ++    N +  +RI Q+ G    N  +  + + +  
Sbjct: 208 VGRYAVHCNGVSFSCKKHGDSGVSVST-PVNSSTIDRIRQIHGSAVANELIPFDVEDSAL 266

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   I   +   Y+  +P G +P   L +E
Sbjct: 267 GFRASGFASNANYH-AKRTVILLFINHRSVESSGIRKAMEQTYSAFLPKGGHPFAYLNIE 325

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P +VDVNVHP K  + F N   I   I  +++  +     S+ + +++ ++   H+  
Sbjct: 326 IEPHRVDVNVHPTKREVNFLNEDEIIELICNAVRTKLANVD-SSRTFMTQTLLPGIHRSG 384

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            P         ++        +  ++    + L   D    +      
Sbjct: 385 TPPADTSSPRATIEGKVPLRTVAGSKRPYENNLVRTDVKMRKITSMFP 432


>gi|242763863|ref|XP_002340659.1| DNA mismatch repair protein Mlh1, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218723855|gb|EED23272.1| DNA mismatch repair protein Mlh1, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 764

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 185/387 (47%), Gaps = 15/387 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIENS+DA S+ +E ++  GG    QITDNG 
Sbjct: 31  RIRALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGSTSIEILVKDGGLKLLQITDNGH 90

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D + I T+GFRGEAL SI  +SHLT+ ++   ++   
Sbjct: 91  GINVDDLPILCERFTTSKLREFEDLTAIGTYGFRGEALASISHISHLTVTTKTASSSCAW 150

Query: 120 QIAISGEKISSVRPVAMNP--------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+   +P             GT + V DLF+ +P R    +S   E   I DV
Sbjct: 151 RAHYSDGKLVPAKPSQSAKPKPTAGRGGTQITVEDLFYNVPTRRRAFRSSSEEYAKILDV 210

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   +   +   +  +RI Q+ G    N  ++ N +  + 
Sbjct: 211 VGRYAVHCSNVAFSCKKHGDSGSSI-ATTAKSSTIDRIRQIHGSSVANELIDFNIEDTKR 269

Query: 231 --ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
                 G      ++        +FIN R+V+   +   I   Y+  +P G +P + L L
Sbjct: 270 LGFKASGLVTNANYH-VKRTTILLFINHRSVESSALKKAIEQTYSTFLPKGGHPFIYLDL 328

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           EI+P +VDVNVHP K  + F N   I   I   I   + +   S + +    +     + 
Sbjct: 329 EIEPNRVDVNVHPTKREVNFLNEDEIIESICSEITTRLAQVDSSRTFMTQTLLPGVPKES 388

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENR 375
           + P +      TS     E   ++ + 
Sbjct: 389 DIPPSDSATRRTSSQKPYENNLVRTDS 415


>gi|134084347|emb|CAK48687.1| unnamed protein product [Aspergillus niger]
          Length = 767

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 126/508 (24%), Positives = 219/508 (43%), Gaps = 21/508 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 21  RIRALDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSIEILVKDGGLKLLQITDNGH 80

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 81  GIDRDDLPILCERFTTSKLKQFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 140

Query: 120 QIAISGEKISSVRPVAMNP--------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+   +P             GT + V DLF+ +P R    +S   E   I DV
Sbjct: 141 RAHYSDGKLVPPKPGQSAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDV 200

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R ++    V+F+      +   ++      N  +RI Q+ G    N  V+ N +  + 
Sbjct: 201 VGRYSVHCSGVAFSCRKHGDSGVSVST-PAAANTIDRIRQIHGSAVANELVKFNVEDEKL 259

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   I   +   Y+  +P G +P V + LE
Sbjct: 260 GFRSSGFATNANYH-VKRTTILLFINHRSVESTAIKRAVEQTYSSFLPKGGHPFVYIDLE 318

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-----TSSVLSKKMISS 344
           I+P++VDVNVHP K  + F N   I   I   I+  + +   S      + +     +  
Sbjct: 319 IEPQRVDVNVHPTKREVNFLNEDEIIECICNEIRSKLAQVDSSRTFLTQTLLPGVTTMEP 378

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
            ++D      +PK  ++     E   ++ +             T         ++     
Sbjct: 379 ANRDPEGTDTVPKTPSTTKKPYEHNLVRTDSKVRKITSMLTPATPHTPTASQADTTVLDE 438

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            L         + I   +   L    ++A H   + E +        +  +  +      
Sbjct: 439 GLQYETTSREPHRISFTSVKNLRASVRNAMH-NTLTETIASHTYVGLVDERRRIAAIQSG 497

Query: 465 LLEGECALIMEHDEDLHRLGI-KAERFG 491
           +        M   E  +++G+     FG
Sbjct: 498 VKLYLIDYGMFCTEFFYQIGLTDFANFG 525


>gi|281485557|ref|NP_001069462.2| MutL protein homolog 1 [Bos taurus]
 gi|194677180|ref|XP_001790604.1| PREDICTED: MutL protein homolog 1 [Bos taurus]
 gi|297488412|ref|XP_002696983.1| PREDICTED: mutL homolog 1, colon cancer, nonpolyposis type 2 (E.
           coli) [Bos taurus]
 gi|296475135|gb|DAA17250.1| mutL homolog 1, colon cancer, nonpolyposis type 2 [Bos taurus]
          Length = 758

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 168/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLEIVCERFTTSKLQSFEDLAHISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R A+  
Sbjct: 128 AHYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYAVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             + F+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGIGFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVECEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESASLRKAIETVYAAYLPKSTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEDSILERLQQHIESRL 334


>gi|76800920|ref|YP_325928.1| DNA mismatch repair protein MutL [Natronomonas pharaonis DSM 2160]
 gi|76556785|emb|CAI48359.1| DNA mismatch repair protein MutL [Natronomonas pharaonis DSM 2160]
          Length = 712

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/402 (28%), Positives = 189/402 (47%), Gaps = 10/402 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L  +  ++IAAGE++ERP+  +KEL+EN+LDA++SRV+  +  GGK    + D+G G
Sbjct: 5   IRELDAETRDRIAAGEVVERPASVVKELVENALDADASRVDVTVEAGGKDRIVVADDGVG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +   AV+ H TSK+ D  D   I T GFRGEAL +IG+V+ L L ++P     G +
Sbjct: 65  MSETDARAAVKEHTTSKLRDVSDLDTIGTLGFRGEALHAIGSVARLRLRTKPRDGTRGTE 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G  +    PV    GT VEV  LF  +PAR  +LK++  E + +  V+   A+A P
Sbjct: 125 LVVEGGDVVDCGPVGCPEGTTVEVTALFENVPARRKYLKTDTTEFDHVQQVVAGYALAAP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT---LQGYT 237
            V+          +       +G+    + +V G +   + V + +  ++     + G  
Sbjct: 185 DVAVRLDHDGRETF---ATPGDGDRQSAVLEVYGREVAASMVSVEQSWDDGPVAGVAGLV 241

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
             P  NR   +     +NGR V    +   I  AY   +   RYP  V+ +++ P  VDV
Sbjct: 242 SHPETNRAGRDYMTTLVNGRYVTASAVREAIVEAYGRQLAADRYPFAVIDIDLPPGGVDV 301

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   +R  +  +++ A+   G+  S     +  S+  Q   P    P 
Sbjct: 302 NVHPRKLEVLFSDEKTVRERVENAVESALLDAGLLRSRAP--RGQSAPEQTEIPADEEPP 359

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
              S    +  +          D     +      +DP   S
Sbjct: 360 RTESGHRRRPAVGSSSTSGRAADSTEQSNAADDVRSDPPAAS 401



 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q    Y++++  DGLV++DQHAA ER+ +E+++   +   +T+Q L  P  + L 
Sbjct: 513 MTVFGQFDDTYLVAEADDGLVLIDQHAADERINYERLKAAVDGD-LTTQALAEPVSVSLT 571

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN---IPQLLRDIIDEIIDS 523
             E AL+ E+ E L RLG +        + +   PA+L +     +P+L RD++ E    
Sbjct: 572 AREAALVEEYGEALSRLGFRVRTDDDRTLTVTTAPALLVEAAGDAMPELARDLLGEFTGG 631

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               T+   ++++L  +AC+ SI+    ++   +  LL  ++   N   C HGRPT ++L
Sbjct: 632 DPDGTVAAVVDDLLGDLACHPSIKGNTSLREGTVEGLLSALDDCENPYACPHGRPTVLEL 691

Query: 584 KLSDIEKLFGR 594
              +IE  F R
Sbjct: 692 PREEIETRFER 702


>gi|317150427|ref|XP_001824017.2| DNA mismatch repair protein Mlh1 [Aspergillus oryzae RIB40]
          Length = 727

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 184/373 (49%), Gaps = 9/373 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIRALDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSLEILVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKQFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 149

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +   S  K+  + +  A   GT + V DLF+ +P R    +S   E   I DV+ R A+ 
Sbjct: 150 RAHYSNGKLPAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDVVGRYAVH 209

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGY 236
              V+F+      +   ++      N  +RI Q+ G    N  VE   +  +      GY
Sbjct: 210 CSGVAFSCRKHGDSGVSIST-PVTANTIDRIRQIHGSAVANELVEFKSEDRKLGFRSSGY 268

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                ++        +FIN R+V+   +   I   Y+  +P G +P   + LEI+P +VD
Sbjct: 269 VTNANYH-VKRTVILLFINHRSVESTAVKRAIEQTYSSFLPKGGHPFAYIDLEIEPHRVD 327

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  + F N   I   I Q I+  + +    +S     + +    +   P    P
Sbjct: 328 VNVHPTKREVNFLNEDEIIECICQEIKSNLTQVD--SSRTFLTQTLLPGVRTMEPAPRDP 385

Query: 357 KYATSLTNTQEKL 369
               +   T +  
Sbjct: 386 DSTDAEGRTPKTP 398


>gi|212529290|ref|XP_002144802.1| DNA mismatch repair protein Mlh1, putative [Penicillium marneffei
           ATCC 18224]
 gi|111380655|gb|ABH09704.1| MLH1-like protein [Penicillium marneffei]
 gi|210074200|gb|EEA28287.1| DNA mismatch repair protein Mlh1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 759

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 192/380 (50%), Gaps = 15/380 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIENS+DA S+ +E ++  GG    QITDNG 
Sbjct: 31  RIRALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGSTSIEVLVKDGGLKLLQITDNGH 90

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D + I T+GFRGEAL SI  +SHLT+ ++   ++   
Sbjct: 91  GINVDDLPILCERFTTSKLKEFEDLTAIGTYGFRGEALASISHISHLTVTTKTASSSCAW 150

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P A   GT + V DLF+ +P R    +S   E   I DV
Sbjct: 151 RAHYSDGKLVPAKPGQSAKPKPTAGRGGTQITVEDLFYNVPTRRRAFRSSSEEYAKILDV 210

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++  +   +  +RI Q+ G    N  +E N +  + 
Sbjct: 211 VGRYAVHCANVAFSCKKHGDSGSSIST-AAKSSTIDRIRQIHGSAVANELIEFNVEDTKR 269

Query: 231 --ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
                 G      ++        +FIN R+V+   +  +I   Y+  +P G +P + L L
Sbjct: 270 LGFKASGLVTNANYH-VKRTTILLFINHRSVESSALKKSIEQTYSTFLPKGGHPFIYLDL 328

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           EI+P +VDVNVHP K  + F N   I   I   I   + +   S + +    +    +  
Sbjct: 329 EIEPNRVDVNVHPTKREVNFLNEDEIIESICSEITTRLAQVDSSRTFMTQTLLPGVPNVS 388

Query: 349 NAPKTHLPKYATSLTNTQEK 368
           + P +   + A++++++Q+ 
Sbjct: 389 DTPSSDPARKASAVSSSQKP 408


>gi|189206011|ref|XP_001939340.1| DNA mismatch repair protein mutL [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975433|gb|EDU42059.1| DNA mismatch repair protein mutL [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 734

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 198/388 (51%), Gaps = 13/388 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L++ ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIKALAQDVVNKIAAGEIIVAPVHALKELIENAVDAGSTALEILVKEGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+   +D ++I T+GFRGEAL SI  ++HL + +R  +++   
Sbjct: 90  GIDKEDLPILCERFTTSKLKAFEDLTSIGTYGFRGEALASISHIAHLKVTTRTKESSCAW 149

Query: 120 QIAISGEKISSVRPVA--------MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +  K+SS +P             GTI+ V DLF+ +P+R    +S   E   I ++
Sbjct: 150 EAHFADGKLSSPKPGQSAEPKPKAGRQGTIITVEDLFYNVPSRRRAFRSASEEYAKILEL 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V+F+   I  N           +  +RI Q+ G    N  VEL+ +    
Sbjct: 210 VGRYAVHCEGVAFSCKKIGENNSNSVTVPAAASVKDRIRQIHGSSAANELVELSVEDDRW 269

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +G+     +N     Q  +FIN R+V+   I  ++   YA  +P G +P   L LE
Sbjct: 270 GFKCKGWVSSANYN-AKRTQMLLFINHRSVESPVIKKSVEQTYATFLPKGGHPFFYLSLE 328

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   I  +I++ ++K   S S +    + +      
Sbjct: 329 IEPQRVDVNVHPTKREVHFLNEDEIIAVICDAIRENLSKVDTSRSFMTQSLLPNPKAPFA 388

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLS 377
            P       A    +  ++   +  + +
Sbjct: 389 TPMKSNVPVAPGTGHASDRSVSRAPQTA 416


>gi|148677029|gb|EDL08976.1| mutL homolog 1 (E. coli), isoform CRA_b [Mus musculus]
          Length = 673

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 184/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 28  IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 87

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 88  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 147

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 148 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 207

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 208 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 266

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 267 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 325

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   I   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 326 NVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 385

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 386 VASSSTSGS 394


>gi|148677028|gb|EDL08975.1| mutL homolog 1 (E. coli), isoform CRA_a [Mus musculus]
          Length = 640

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 184/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   I   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 306 NVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 365

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 366 VASSSTSGS 374


>gi|13878583|sp|Q9JK91|MLH1_MOUSE RecName: Full=DNA mismatch repair protein Mlh1; AltName: Full=MutL
           protein homolog 1
 gi|7595954|gb|AAF64514.1|AF250844_1 MutL homolog 1 protein [Mus musculus]
          Length = 760

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 184/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   I   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 306 NVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 365

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 366 VASSSTSGS 374


>gi|255958238|ref|NP_081086.2| DNA mismatch repair protein Mlh1 [Mus musculus]
 gi|74223060|dbj|BAE40671.1| unnamed protein product [Mus musculus]
          Length = 760

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 184/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   I   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 306 NVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 365

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 366 VASSSTSGS 374


>gi|26332473|dbj|BAC29954.1| unnamed protein product [Mus musculus]
          Length = 653

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 184/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   +   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 306 NVHPTKHEVHFLHEESVLQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 365

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 366 VASSSTSGS 374


>gi|73989710|ref|XP_859279.1| PREDICTED: similar to MutL protein homolog 1 isoform 5 [Canis
           familiaris]
          Length = 688

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 180/376 (47%), Gaps = 7/376 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++  +     +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTAEAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S        +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEVVKSTTG 365

Query: 358 YATSLTNTQEKLFLQE 373
              S T + +K++  +
Sbjct: 366 ATPSSTGSGDKVYAHQ 381


>gi|73989702|ref|XP_859114.1| PREDICTED: similar to MutL protein homolog 1 isoform 2 [Canis
           familiaris]
          Length = 495

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 180/376 (47%), Gaps = 7/376 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++  +     +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTAEAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S        +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEVVKSTTG 365

Query: 358 YATSLTNTQEKLFLQE 373
              S T + +K++  +
Sbjct: 366 ATPSSTGSGDKVYAHQ 381


>gi|73989704|ref|XP_534219.2| PREDICTED: similar to MutL protein homolog 1 isoform 1 [Canis
           familiaris]
          Length = 757

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 180/376 (47%), Gaps = 7/376 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++  +     +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTAEAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ATYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S        +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEVVKSTTG 365

Query: 358 YATSLTNTQEKLFLQE 373
              S T + +K++  +
Sbjct: 366 ATPSSTGSGDKVYAHQ 381


>gi|148677030|gb|EDL08977.1| mutL homolog 1 (E. coli), isoform CRA_c [Mus musculus]
          Length = 760

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 184/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   I   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 306 NVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 365

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 366 VASSSTSGS 374


>gi|149729634|ref|XP_001489268.1| PREDICTED: mutL homolog 1, colon cancer, nonpolyposis type 2 (E.
           coli) [Equus caballus]
          Length = 758

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 110/329 (33%), Positives = 168/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ VI  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVIKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D + I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLAKISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ANYSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLGFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIESKL 334


>gi|58268004|ref|XP_571158.1| DNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227392|gb|AAW43851.1| DNA binding protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 765

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L++ +INQIAA EII RPS AIKEL+ENSLDA S+ ++  +  GG    QITDNG 
Sbjct: 24  PIHRLTKDVINQIAAAEIIHRPSNAIKELLENSLDAGSTSIKISVKDGGLKLLQITDNGH 83

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R+ TSK+   +D  ++ T+GFRGEAL SI   SH+ ++++      G 
Sbjct: 84  GINKDDLPLLCERYATSKLQKFEDLQSLGTYGFRGEALASISYCSHVEVVTKTKNEGCGW 143

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +       +           +P A N GT++   DLF+ +P R    KS   E N I DV
Sbjct: 144 KAHYQDGSLIPAKPGGTADPKPAAANDGTVITAADLFYNMPLRKRAFKSTSDEYNRIIDV 203

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + + AI  P V++      +    +  Q    N    I+ +      N  +E+ E   + 
Sbjct: 204 VTKYAIHNPHVAWVCKKAGTALPDVATQVG-SNTKANIAALYTSALANELLEIPESELQP 262

Query: 231 ----ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
                 L+G+      +      + +FIN R V    +   +   Y   +P G  P   L
Sbjct: 263 ARLGAKLKGWVSNANSSWSKKGGWLLFINNRLVDSNKLKKAVEGHYTSYLPKGASPWAYL 322

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            L+IDP ++DVNVHP KS +RF N   I + ++Q++Q A+    +S S  +   +  +  
Sbjct: 323 SLQIDPAKIDVNVHPTKSEVRFLNEDEIVDAVVQAVQTALEGANLSRSFTVQTLLPGAPT 382

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND---PVEESEATH 403
                ++     A++  +T++     + R+  ++       T  + +     VE+ E   
Sbjct: 383 PLGKRESSNSTIASASFSTRKAAPNYKVRMDPSNRTLDSMFTVIDPSQLSGFVEDGELQE 442

Query: 404 YQLGIACAQIHQNYI 418
            +       +   + 
Sbjct: 443 QERPSKRRNVDPEFQ 457


>gi|134112429|ref|XP_775190.1| hypothetical protein CNBE4630 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257842|gb|EAL20543.1| hypothetical protein CNBE4630 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 765

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L++ +INQIAA EII RPS AIKEL+ENSLDA S+ ++  +  GG    QITDNG 
Sbjct: 24  PIHRLTKDVINQIAAAEIIHRPSNAIKELLENSLDAGSTSIKISVKDGGLKLLQITDNGH 83

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R+ TSK+   +D  ++ T+GFRGEAL SI   SH+ ++++      G 
Sbjct: 84  GINKDDLPLLCERYATSKLQKFEDLQSLGTYGFRGEALASISYCSHVEVVTKTKNEGCGW 143

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +       +           +P A N GT++   DLF+ +P R    KS   E N I DV
Sbjct: 144 KAHYQDGSLIPAKPGGTADPKPAAANDGTVITAADLFYNMPLRKRAFKSTSDEYNRIIDV 203

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + + AI  P V++      +    +  Q    N    I+ +      N  +E+ E   + 
Sbjct: 204 VTKYAIHNPHVAWVCKKAGTALPDVATQVG-SNTKANIAALYTSALANELLEIPESELQP 262

Query: 231 ----ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
                 L+G+      +      + +FIN R V    +   +   Y   +P G  P   L
Sbjct: 263 ARLGAKLKGWVSNANSSWSKKGGWLLFINNRLVDSNKLKKAVEGHYTSYLPKGASPWAYL 322

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            L+IDP ++DVNVHP KS +RF N   I + ++Q++Q A+    +S S  +   +  +  
Sbjct: 323 SLQIDPAKIDVNVHPTKSEVRFLNEDEIVDAVVQAVQTALEGANLSRSFTVQTLLPGAPT 382

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND---PVEESEATH 403
                ++     A++  +T++     + R+  ++       T  + +     VE+ E   
Sbjct: 383 PLGKRESSNSTIASASFSTRKAAPNYKVRMDPSNRTLDSMFTVIDPSQLSGFVEDGELQE 442

Query: 404 YQLGIACAQIHQNYI 418
            +       +   + 
Sbjct: 443 QERPSKRRNVDPEFQ 457


>gi|302148833|pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
          Length = 348

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 9   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 68

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 69  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 128

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 129 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 189 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 247

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 248 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 306

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 307 NVHPTKHEVHFLHEESILERVQQHIESKL 335


>gi|291399797|ref|XP_002716213.1| PREDICTED: MutL protein homolog 1 [Oryctolagus cuniculus]
          Length = 758

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTSDGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLPG-ATTVDNIRSIFGNAVSRELIEVGCEDPTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLKKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILARVQQHIESKL 334


>gi|283851832|ref|ZP_06369109.1| DNA mismatch repair protein MutL [Desulfovibrio sp. FW1012B]
 gi|283572748|gb|EFC20731.1| DNA mismatch repair protein MutL [Desulfovibrio sp. FW1012B]
          Length = 655

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 137/364 (37%), Positives = 204/364 (56%), Gaps = 12/364 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I GGG++   + D+G+
Sbjct: 9   TIRVLPPELQNQIAAGEVVERPASVLKELVENSLDAGAARIDVAIEGGGRTLLSVADDGW 68

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT EE+P+AV RH TSKI+   + ++I +FGFRGEALPSI +VS  TL SR    + GA
Sbjct: 69  GMTPEELPLAVTRHATSKIASMAELASIASFGFRGEALPSIASVSTFTLTSRHEAFDEGA 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I +   +I    P A+  GT +EVRDLF  +PARL FLKSE  ET   TDV  R A+A 
Sbjct: 129 IIKVESGRIVERGPAALAKGTRIEVRDLFAAVPARLKFLKSEPTETKRATDVFCRTALAR 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+   S       +            R+S +      ++  E++     I + G  G 
Sbjct: 189 LDVAMKLSVGGKTSLRFPA---GQTLLARLSGIWPPAVTDDLFEVDYALGPIRVHGILGK 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +  A++   ++NGR V D+ +L+ +R AY   +    YP  VL LEI P  +DVNV
Sbjct: 246 PLKAQAKADRMLFYVNGRAVLDRVLLAAVREAYKGRLLSREYPQAVLFLEIPPEDLDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+   +   + +++ +A++K        L  + + +           PK+A
Sbjct: 306 HPAKTEVRFRDEQAVFVNLRRAVGQALDKN-------LVLRTVPAPEPWVRQDAEGPKFA 358

Query: 360 TSLT 363
           + L 
Sbjct: 359 SRLD 362



 Score =  136 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 96/247 (38%), Gaps = 15/247 (6%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
            +  +   P     L +      ++  R         +          VEE E       
Sbjct: 422 PHVAEGAPPVRQAPLRHPDPPAVVRHERGEEAAGPAPEILRAR----TVEELEPALPPGV 477

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
               Q    Y+I      LV+VDQHAAHER++F  M  + +  +  S+ +  P  + L  
Sbjct: 478 RYLGQFADTYLIVDLGRELVLVDQHAAHERILFAAM--EASGHRGHSRPVGIPVEVPLHA 535

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E A + E   +L  +G   E   P  +A+   P  LS     + L   +        + 
Sbjct: 536 SEAARLRELFPELRAMGFVLETPRPGLVAMTGAPPALSVGQAREYLSAALA-----GQSK 590

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
           TL     ++   M+C  ++++G  +   E   LL +  K P+   C HGRP  ++    +
Sbjct: 591 TL----RDLWILMSCKTAVKAGTPLADDEAVALLAQWAKAPDRDYCPHGRPVTVRFGPRE 646

Query: 588 IEKLFGR 594
           +EK+F R
Sbjct: 647 MEKMFKR 653


>gi|22300008|ref|NP_683255.1| DNA mismatch repair protein [Thermosynechococcus elongatus BP-1]
 gi|22296193|dbj|BAC10017.1| DNA mismatch repair protein [Thermosynechococcus elongatus BP-1]
          Length = 541

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/598 (20%), Positives = 241/598 (40%), Gaps = 83/598 (13%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
            L  ++   IAA E ++  +   +EL+EN+LDA +SR+            ++TDNG G+ 
Sbjct: 9   PLPLEMQRAIAAAETLDSLATVAQELVENALDAGASRIHLH-WHPSAWHLEVTDNGEGIR 67

Query: 65  SEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
             ++      + +SK+  S   ++I T GFRG+AL S+  ++ LT+ SR  +  +G Q++
Sbjct: 68  GADLTQVALPYTSSKLPASGQLADITTLGFRGQALHSLAQMAQLTICSRHREAESGWQVS 127

Query: 123 ISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
                ++ S RP+ M  GT V    +F   P R      +Q     +   ++++A+ +P+
Sbjct: 128 YDAHGQVRSQRPLGMAVGTRVIAEHIFQDWPQRQQGANPKQ-----LQQRLQQIALCFPQ 182

Query: 182 VSFTFSTIKSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           V++               ++  +   + I Q+  +D          +  +  ++     P
Sbjct: 183 VAWYLLKEGKRWCHWPAVASLSDRLLQLIPQLHPQDL--------RQMRDAQIELVLAPP 234

Query: 241 TFNRGNA-NQFYVFINGRTVQ---DKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
             +     +   V +NGR V+   D      I  A+   +P  R+P+ +  L + P  +D
Sbjct: 235 DRHHRPRPDGLGVAVNGRWVELHSDPSWQQVILEAFGRGLPRQRFPLCIAHLHLPPGAID 294

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
            +  P K  I  R P   +  +++ I + +           S +++ +       +T L 
Sbjct: 295 WSAEPQKRRIYLREPEQWQALLVERIGQLLACPATPLRDASSYQVLKAAEPAARYRTLLS 354

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
                L+                                                Q+H  
Sbjct: 355 TNGAQLSLPP----------------------------------------LKVVGQLHNT 374

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           YII +  +G+ +++QH AHER+++E++  D+ + ++    LL            +L    
Sbjct: 375 YIIVEHAEGIWLIEQHIAHERVLYEQIETDWQAVELEQPVLL-----------KSLTETQ 423

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            +     G+    FG    A+R +P +L  +       D++  +I+ S    L      +
Sbjct: 424 VQRFQDWGLGIAPFGVQLWAVRRVPGLLRDR------PDLVAALIELSQVTDLSAAKVAV 477

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
               AC  +IR+G  +   EM  L+ +  +      C HGRP  ++L+ S + + F R
Sbjct: 478 ----ACRSAIRNGTPLTLAEMQTLVDQWYRCRQPHTCPHGRPICLQLQESSLARFFRR 531


>gi|218886821|ref|YP_002436142.1| DNA mismatch repair protein MutL [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757775|gb|ACL08674.1| DNA mismatch repair protein MutL [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 763

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 120/400 (30%), Positives = 202/400 (50%), Gaps = 12/400 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   + NQIAAGE++ERP+  +KEL+ENSLDA ++ VE  +  GG+S   + D+G 
Sbjct: 36  RIQVLPTDLRNQIAAGEVVERPASVVKELVENSLDAGATTVEVTLDNGGQSLIMVRDDGT 95

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN--- 116
           G+ +EE+ +AV RH TSK+++  + + I +FGFRGEALPSI +VS   + S P   +   
Sbjct: 96  GIPAEELELAVTRHATSKVANLAELARIGSFGFRGEALPSIASVSRFRMTSAPVAPDGTP 155

Query: 117 -TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                I ++   + S  P A++ GTIVEVRDLF  +PARL FLK++  E     ++  R+
Sbjct: 156 GEATCIEVAHGHVVSAGPAALHRGTIVEVRDLFANVPARLKFLKTQATELKRAQELFARL 215

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+  P V+FT S       +            R++ +     ++     +  ++ I + G
Sbjct: 216 ALTRPDVAFTLSAGGREVLRFPA---GQTLARRLAVLWPPAVVDTLHPFDRMTDGIRVHG 272

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
            T  P   +   ++  +++NGR V D+ +L  +R AY   +    YP + L L+IDP +V
Sbjct: 273 LTADPRGAQPRPDRMLLYVNGRAVNDRLLLKAVREAYKGRLLAREYPQLALFLDIDPEEV 332

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS---SFHQDNAPK 352
           DVNVHPAK+ +RFR+   +   +++++ +++++     +   +   +     F       
Sbjct: 333 DVNVHPAKNEVRFRDERAVFVAVLRALGESLDRMPAMGAGDEAAGALPGQNPFAVGGQQP 392

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
                          +     N  S  D    +       
Sbjct: 393 GGWRTGEHGQFGQASQPHAAGNNPSAPDAPRREARPLGFW 432



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 92/247 (37%), Gaps = 12/247 (4%)

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           + A     P      +           + S  D  P D    +   +   E         
Sbjct: 527 EEAGLAASPGLLADGSRPFTDADAPTAQTSPPDFPPPDFTPPNSITEDTREGGVRIGDYT 586

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
                     ++ +  D L++VDQHAAHE ++ E++R+   +       L       L  
Sbjct: 587 YLGQIADTYLVLRRGRDTLLLVDQHAAHECVLHERIRRRGTAGGGQFLALPVELP--LHP 644

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            E   + E   DL  LG   E  G   +  R +PA+L +      LR+ +          
Sbjct: 645 AEAERLHELRPDLEALGFALETTGA-TVRARAVPALLDRSEAAAFLREAVA--------- 694

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
                ++ + A MAC G+I++G+++   E   L+ +    P    C HGRP  +     +
Sbjct: 695 GRTSSLDALWAMMACKGAIKAGQRLTPDEAAGLVAQWLATPGRDFCPHGRPAVLTFTPGE 754

Query: 588 IEKLFGR 594
           +E++F R
Sbjct: 755 MERMFKR 761


>gi|296414329|ref|XP_002836854.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632695|emb|CAZ81045.1| unnamed protein product [Tuber melanosporum]
          Length = 693

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 132/547 (24%), Positives = 232/547 (42%), Gaps = 41/547 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L + ++N+IAAGEII  P  A+KELIENS+DA S+ ++ ++  GG    QI+DNG 
Sbjct: 31  RIKPLDQVVVNKIAAGEIIVAPVHALKELIENSVDAGSTSIDILVKDGGLKLLQISDNGH 90

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D  +I T+GFRGEAL SI  ++HLT+ +R   +  G 
Sbjct: 91  GIDENDLPILCERFTTSKLQSFEDLQSIGTYGFRGEALASISHIAHLTITTRTANSPIGL 150

Query: 120 QIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+         + +PV  N GT + V DLF+ +P+R    +S   E   I D+
Sbjct: 151 RATYSDSKLITPKPGQPANPKPVHRNKGTQITVEDLFYNVPSRRRAFRSPSEEYAKILDL 210

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+          ++  +      +RI ++ G    N  +      +  
Sbjct: 211 VGRYAVHCGGVAFSCKKYGDPDVGVSTTAG-ATTTDRIRRIHGNAVANELLPFEVSDDYL 269

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +G      ++        +FIN R+V    I   I + YA  +P G +P   + L+
Sbjct: 270 GFKAKGMLSNANYH-VKKTTLLLFINNRSVDSSSIRKGIESTYAPFLPKGGHPFAYMSLD 328

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH--Q 347
           I+P +VDVNVHP K  + F +   I   + +S+Q+ +     S S  L++ ++ S     
Sbjct: 329 IEPHRVDVNVHPTKREVNFLHEEEIVQKLCESLQEKLAAVDTSRSYALTQALLPSAKAVP 388

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE--------S 399
           DN+          S     ++  + + + + +  +   D    +    ++         +
Sbjct: 389 DNSSGQKAAARTASRAEESKQPLVAKPKKTYDYNMVRADTRDRKITTMLQPKSQKEDRTA 448

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           E   Y+           Y   +     V   +H    + + E          +  Q  L 
Sbjct: 449 EGDEYEYDDNRQWTSVKYQTIKKLRKAVWDTKH----KDLCELFHNHTFVGIVDEQRRLA 504

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGP-NAIAIREIPAILSKKNIPQLLRDIID 518
                L            E  +++G     F     I +          N P  L+DI++
Sbjct: 505 SVQHGLKLYLIDYAAAAFELFYQIG--LSDFSNYGTIRL----------NPPLALKDILE 552

Query: 519 EIIDSST 525
             I+   
Sbjct: 553 IAIEDEK 559


>gi|301167944|emb|CBW27530.1| putative DNA mismatch repair protein [Bacteriovorax marinus SJ]
          Length = 574

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 156/605 (25%), Positives = 264/605 (43%), Gaps = 52/605 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L E +I+QI AGE+IERP+  +KEL+ENSLDA S+ ++  I   G     I DNG 
Sbjct: 9   KINLLPEHLIDQIKAGEVIERPASLVKELLENSLDANSTNIKISIIENGLELISIEDNGD 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-- 117
           G+  E++P A  RH TSKI   +D  N+++FGFRGEAL S+ A+S +T  S P  N    
Sbjct: 69  GILFEDLPYAFCRHATSKIERFEDIYNLYSFGFRGEALASMAAISRITCSSTPIDNPEQG 128

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G  +    +++S     +   GT + ++DLFF  PARL F+KS+  E N I  VI    +
Sbjct: 129 GKIVIHGAKEMSHTPLASRKQGTSIFIKDLFFNTPARLKFIKSKTSEKNAIKRVINAFIL 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             PKV F+      ++             +RI ++I      N    E   +    +++G
Sbjct: 189 TNPKVQFSVKWDDKDKNIFKPVEDT-RLADRIREIILPKNSPNKELYEFEGEYEGHSVRG 247

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           +    T         Y+F+NGR   D+ I  +I     +  P G      ++L + P QV
Sbjct: 248 FASAHTSKGNAGKSQYLFVNGRLFTDRQIHQSILRTMEKVWPFGETGHYCVMLNVPPTQV 307

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHP K+ ++F    I+ + +  SI+K I +               +F ++ AP+  L
Sbjct: 308 DVNVHPNKTQVKFFKANIVFSLVSASIKKFIEE---------------NFKEEVAPQNEL 352

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                     +E+     ++   +      +   S           ++ +     +++++
Sbjct: 353 FNR----DQAKEQSVQMFSQSPFSTYSEQSNHPVSYGPSSRVLPTLSNTESATFLSRLNE 408

Query: 416 NYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
            Y++    +    ++D  A   +   +  ++++   +  +  LL  E   L       I 
Sbjct: 409 RYLLLTDENSKKFMIDSFALFIQYWIDNWKENYPYDEAKTTPLLISEPFQL----HQGID 464

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
           +    L  LG++ ++   +  A+R IP      NI ++L DI+     SS      D  E
Sbjct: 465 KLANFLKTLGLELDKLDESTYALRTIPNCFDSFNIREVLSDILTIFQQSSLN---PDNFE 521

Query: 535 NILATMACYGSIR-SGRK---MQSIEMNRLLRE--MEKNPNSSQCNHGRPTFIKLKLSDI 588
            +L        I+        +    +N +L+   + +  NS          + L    +
Sbjct: 522 KVLNET-----IKDFNPSQFFLSDYAINYILQRYTLAQALNSKA-------IVNLDNEAL 569

Query: 589 EKLFG 593
           EKLF 
Sbjct: 570 EKLFK 574


>gi|78358503|ref|YP_389952.1| DNA mismatch repair protein MutL [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220908|gb|ABB40257.1| DNA mismatch repair protein MutL [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 692

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 132/451 (29%), Positives = 216/451 (47%), Gaps = 23/451 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L + + NQIAAGE++ERPS  +KEL+ENSLDA +  VE  I  GG+S   + D+G 
Sbjct: 11  RIQLLPDALRNQIAAGEVVERPSSVVKELVENSLDAGARTVEVAIEDGGRSLITVRDDGD 70

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS----RPPQN 115
           G+ + E+ +AV RH TSK++  D+   I ++GFRGEALPSI +VS   + S    R   +
Sbjct: 71  GIDAAELELAVTRHATSKVTTFDELMRIASYGFRGEALPSIASVSDFRMTSAPAQRTAAD 130

Query: 116 --NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
                + I +    I S  P A++ GT+VEVRDLF  +PARL FLK+   E+    ++  
Sbjct: 131 TAPEASCIHVRHGSIISHGPAALSRGTLVEVRDLFMNVPARLKFLKTTATESKRCQELFC 190

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS----- 228
           R+A+A P   F+ S+     ++     T     ER++ +       + VE+         
Sbjct: 191 RLALARPDAGFSLSSGGREVFRFPAGQTW---RERLAVLWPPSITESMVEVPPLCSRAHD 247

Query: 229 ---NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
               ++ ++G  G P  ++  A++   ++NGR V DK ++  +R AY+  +    YP V+
Sbjct: 248 GTVPDVQVRGLCGDPRQSQPRADKMLFYVNGRAVTDKLLMRAVRDAYSGRMLGREYPQVL 307

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           L +E+DP  VDVNVHPAKS +RFR    + + + ++++ A+ +     S+  +     + 
Sbjct: 308 LFIELDPEMVDVNVHPAKSEVRFREERHVFSAVRRAVEAALQQL----SATGTPDSPDTA 363

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
              + P       A            +           +D            E +    +
Sbjct: 364 GVADIPGHAASGAAGLRLTPDSPATPRAAARPLGFWGEADAAPIVPRAPRDHEDDEVTLR 423

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                +        ++ TD     D H  H 
Sbjct: 424 HMPQPSSADGRTDRTEHTDSAEAPDAHLPHR 454



 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/284 (20%), Positives = 115/284 (40%), Gaps = 24/284 (8%)

Query: 323 QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA-------TSLTNTQEKLFLQENR 375
           +  +      +S+              AP  HLP           +   ++         
Sbjct: 419 EVTLRHMPQPSSADGRTDRTEHTDSAEAPDAHLPHRDDGVRIDFMAGGPSRAAGHTDAAV 478

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATH----YQLGIACAQIHQNYIISQTTDG-LVIVD 430
               D        +S        ++  H            QI   Y++ +     L+++D
Sbjct: 479 AEQPDAEYGHAAPHSTPQPAGAPADPAHGGVTVGEYTYLGQIADTYLVVRRKGSTLLLLD 538

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHA HER+++E++R+D       +Q L  P  + L   E   +    E L  +G   E  
Sbjct: 539 QHAVHERVLYERIRRDATQG--QTQLLAFPAEMPLHNAEAERLASVWEKLAAMGFALETH 596

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           GP ++ IR IP+ L ++   + LR+++ +          + R+ ++   M+C  +I++G+
Sbjct: 597 GP-SLRIRGIPSTLDQRGATEFLREVLAD---------RKGRLPDMWVMMSCRSAIKAGQ 646

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   E   L+ +  + P+   C HGRP  ++   +D+EK+F R
Sbjct: 647 RLTPDEAAGLIAQWLEVPDREFCPHGRPAVLRFTPADLEKMFKR 690


>gi|296228349|ref|XP_002759776.1| PREDICTED: DNA mismatch repair protein Mlh1 [Callithrix jacchus]
          Length = 758

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 170/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +    +     + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADVRTLPSASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFRMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|220905580|ref|YP_002480892.1| DNA mismatch repair protein MutL [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869879|gb|ACL50214.1| DNA mismatch repair protein MutL [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 739

 Score =  313 bits (803), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 117/347 (33%), Positives = 195/347 (56%), Gaps = 8/347 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA++ +++  +  GG+S   + D+G G
Sbjct: 18  IRLLPPELRNQIAAGEVVERPASVLKELVENSLDAQAGQIDVCLENGGQSRISVQDDGRG 77

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR---PPQNNT 117
           + +E++ MAV RH TSKI   +D   I ++GFRGEALPSI +VS  T+ S          
Sbjct: 78  IPAEDLEMAVTRHATSKIRCLEDLERILSYGFRGEALPSIASVSRFTITSASQDAAGQAA 137

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             ++ +    + S  P A++ GT+VEVRDLF  IPARL FLK+   E     D + R+A+
Sbjct: 138 AHRVEVEHGLLKSSGPAALHKGTLVEVRDLFSNIPARLKFLKTPSTEFRRAQDWLARLAL 197

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P+V F   + +    +           ER++ +     ++     + + + I   G  
Sbjct: 198 TRPQVGFCLYSGEREALRFL---PGQTLAERLAVLWPRLIVDALRPFDGRRHGIRAHGLA 254

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
            +P  ++   ++  +++NGR+V DK +L+ +R AY   +    YP + L +E+DP +VDV
Sbjct: 255 ALPNVSQPRGDRILLYVNGRSVTDKRLLAAVRQAYKGRMTSRDYPQIALFVEMDPAEVDV 314

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           NVHPAKS +RFR+ + + + ++ ++Q A+        +   +    +
Sbjct: 315 NVHPAKSEVRFRDESAVFSAVLHAVQGALVTSFDVAEAAWHEGATPA 361



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 13/190 (6%)

Query: 406 LGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                 Q+   Y++ +  DG L+++DQHAAHER+++ +MR+   +       L     + 
Sbjct: 559 NMEYLGQVANTYLVLRDRDGALILLDQHAAHERVLYTRMRRGGFAGSGQLLALPLELSLH 618

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
               E   + E  E+L  LG   E  G   + +R +P +LS+      LR+ +       
Sbjct: 619 --PAERERLFELRENLESLGFVFESSGAG-LEVRGMPPVLSRAEARDFLREALA------ 669

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
                +D +  +  +M+C  +I++G+++   E   LLR+    P+   C HGRP  ++  
Sbjct: 670 ---GRKDDLAGMFISMSCKAAIKAGQRLTDDEAAGLLRQWLAAPDREYCPHGRPCVLRWD 726

Query: 585 LSDIEKLFGR 594
             ++EK+F R
Sbjct: 727 GPELEKMFKR 736


>gi|241558624|ref|XP_002400269.1| DNA mismatch repair protein mlh1, putative [Ixodes scapularis]
 gi|215499751|gb|EEC09245.1| DNA mismatch repair protein mlh1, putative [Ixodes scapularis]
          Length = 668

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 227/493 (46%), Gaps = 48/493 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR+L E + N+IAAGE+I+RP+ A+KE++ENS+DA ++ ++ V   GG    QI DNG 
Sbjct: 9   KIRRLDETVTNRIAAGEVIQRPANALKEMLENSIDARATNIQVVAKAGGLKLLQIQDNGC 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+   +D + I T+GFRGEAL SI  V+H+T+ ++   +    
Sbjct: 69  GIRKEDLDIVCERFTTSKLVKFEDLATISTYGFRGEALASISYVAHVTITTKTADSQCAF 128

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++    K +   +P A N GT + V DLF+ +P R N  KS   E   + DV+ R A+ 
Sbjct: 129 KVSYRSGKPTGPPKPCAGNQGTQIVVEDLFYNVPTRKNAFKSPAEEYGRLVDVVSRYAVH 188

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGY 236
              V F+    + +   +   + + +  + I+ + G+    + + +   + +    L+G+
Sbjct: 189 NAGVGFSIKKAEESATDVRT-TVDDDTLQSIATIYGKTVSRDLLPVECDNPDLKFRLKGF 247

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                 +        +FIN R V+   +   I + YA  +P   +P + L LEI P  VD
Sbjct: 248 VSNANCSYKKCT-LLLFINHRLVESSSLRKAIESIYASYLPKNAHPWLYLSLEIHPANVD 306

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---------------------- 334
           VNVHP K  + F +  +I   + +++  A+     S +                      
Sbjct: 307 VNVHPTKKEVHFLHEDLILEAVQKAVDGALLACNSSRTYLTQSRLPQINVTSKASVAAKK 366

Query: 335 ---------------SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
                          +    + + +F     P T       + T++Q K+  ++ R+   
Sbjct: 367 ADGSAPVVDERHLVRTDSHLQKLDTFLTTARPSTSALGTPENATSSQSKVAEEQPRIKLQ 426

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
            +    +   ++ +  + +    H  +G     ++Q + + Q    L +V+     E L 
Sbjct: 427 SVQALWNQVMAKSHQGLHDLFRNHTFVGC----VNQRFSLVQHQTELYLVNTRKVTEELF 482

Query: 440 FEKMRQDFNSTKI 452
           ++ M ++F +  +
Sbjct: 483 YQIMLKNFGNFSV 495


>gi|303314257|ref|XP_003067137.1| DNA mismatch repair protein MutL family protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240106805|gb|EER24992.1| DNA mismatch repair protein MutL family protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 777

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 114/408 (27%), Positives = 193/408 (47%), Gaps = 15/408 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA +  VE ++  GG    QITDNG 
Sbjct: 28  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGARAVEILVKDGGLKLLQITDNGH 87

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ SE++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 88  GIDSEDLPILCERFTTSKLKAFEDLSSIATYGFRGEALASISHIAHLTVTTKTAGSSCAW 147

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +P A   GT + V DLF+ +P R    +S   E   I D+
Sbjct: 148 RAHYRDGKLVPAKPGQSAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDI 207

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-- 229
           + R A+    VSF+      +   ++    N +  +RI Q+ G    N  +  + + +  
Sbjct: 208 VGRYAVHCNGVSFSCKKHGDSGVSVST-PVNSSTIDRIRQIHGSAVANELIPFDVEDSAL 266

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   I   +   Y+  +P G +P   L +E
Sbjct: 267 GFRASGFASNANYH-AKRTVILLFINHRSVESSGIRKAMEQTYSAFLPKGGHPFAYLNIE 325

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P +VDVNVHP K  + F N   I   I  +++  +     S+ + +++ ++   H+  
Sbjct: 326 IEPHRVDVNVHPTKREVNFLNEDEIIELICNAVRTKLANVD-SSRTFMTQTLLPGIHRSG 384

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            P         ++        +  ++    + L   D    +      
Sbjct: 385 TPPADTSSPRATIEGKVPLRTVAGSKRPYENNLVRTDVKMRKITSMFP 432


>gi|332215524|ref|XP_003256894.1| PREDICTED: DNA mismatch repair protein Mlh1 isoform 1 [Nomascus
           leucogenys]
          Length = 756

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|239906400|ref|YP_002953141.1| DNA mismatch repair protein MutL [Desulfovibrio magneticus RS-1]
 gi|239796266|dbj|BAH75255.1| DNA mismatch repair protein MutL [Desulfovibrio magneticus RS-1]
          Length = 734

 Score =  313 bits (802), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 206/368 (55%), Gaps = 12/368 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  ++ NQIAAGE++ERP+  +KEL+ENSLDA +SR+E  I GGG++   ++D+G 
Sbjct: 9   TIRVLPPELQNQIAAGEVVERPASVLKELVENSLDAGASRIEAAIDGGGRTAVIVSDDGG 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GMT EE+P+A+ RH TSKI+  D+   I +FGFRGEALPSI +VS   + SR      GA
Sbjct: 69  GMTPEELPLALTRHATSKIASIDELERIGSFGFRGEALPSIASVSRFRISSRHEAFEEGA 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +A+   +++   P A+  GT +EVRDLF  +PARL FLKSE VET   T++  R A+A 
Sbjct: 129 FVAVENGRLTERGPAAVAQGTRIEVRDLFAAVPARLKFLKSEAVETKRATELFCRAALAR 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             V+F  +       +          P R++         +  E +  +    + G  G 
Sbjct: 189 LDVAFKLTVGGRTALRFPA---GQTLPARLAAFWPPAVTEDLFEFSSDAAGAKVHGVLGK 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   +G A++ Y ++NGR V D+ +L+ +R AY   +    YP  V+ LE+DP  +DVNV
Sbjct: 246 PLRAQGKADRMYFYVNGRPVLDRVLLAAVREAYKGRLLAREYPQAVIFLELDPADLDVNV 305

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HPAK+ +RFR+   +   + +++  A++K        L  + + +           PK+A
Sbjct: 306 HPAKTEVRFRDEQAVFLTLRRAVGAALDK-------ALVHRTVPAPEPWVKAGAEPPKFA 358

Query: 360 TSLTNTQE 367
           +     +E
Sbjct: 359 SRRDFFEE 366



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 98/262 (37%), Gaps = 11/262 (4%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
           ++    ++   +            +      +       +             +      
Sbjct: 482 SAQPADQEAYPARPSGYGVAEAPAQRQGPARHFDPPAVARRAAAEAALENDGAEAGAPLY 541

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
              V+E E           Q    Y+I  T + LV+VDQHAAHER+I+    ++    + 
Sbjct: 542 ARTVDELEPALPPDMRYLGQFDDTYLIVDTGEELVLVDQHAAHERVIYAA--REAAGRRG 599

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            S+ L  P  + L   E A +     +L  +G   +   P   AI   P  L+     + 
Sbjct: 600 HSRPLGMPVELTLHPSEQARLQTLFTELRSMGFVVDTPRPGMAAITGAPPELTVGQAKEY 659

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           LR  +        + +LQD    +   M+C  +I++G ++ + E   LL +    P+   
Sbjct: 660 LRAALA-----GQSKSLQD----LWILMSCKTAIKAGTRLTADEAVALLSQWATVPDRDY 710

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRP  ++    ++EK+F R
Sbjct: 711 CPHGRPVTVRFGRREMEKMFKR 732


>gi|114585970|ref|XP_001170338.1| PREDICTED: MutL protein homolog 1 isoform 4 [Pan troglodytes]
          Length = 633

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|466462|gb|AAA17374.1| human homolog of E. coli mutL gene product, Swiss-Prot Accession
           Number P23367 [Homo sapiens]
 gi|261858940|dbj|BAI45992.1| mutL homolog 1, colon cancer, nonpolyposis type 2 [synthetic
           construct]
          Length = 756

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  V G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSVFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|189069159|dbj|BAG35497.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|48476966|gb|AAT44531.1| hypothetical rhabdomyosarcoma antigen MU-RMS-40.5 [Homo sapiens]
          Length = 755

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 7   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 67  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 126

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 127 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 187 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 246 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 304

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 305 NVHPTKHEVHFLHEESILERVQQHIESKL 333


>gi|604369|gb|AAA85687.1| hMLH1 [Homo sapiens]
          Length = 752

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|33303773|gb|AAQ02400.1| mutL-like 1, colon cancer, nonpolyposis type 2 [synthetic
           construct]
          Length = 757

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|4557757|ref|NP_000240.1| DNA mismatch repair protein Mlh1 isoform 1 [Homo sapiens]
 gi|730028|sp|P40692|MLH1_HUMAN RecName: Full=DNA mismatch repair protein Mlh1; AltName: Full=MutL
           protein homolog 1
 gi|463989|gb|AAC50285.1| DNA mismatch repair protein homolog [Homo sapiens]
 gi|1079787|gb|AAA82079.1| DNA mismatch repair protein homolog [Homo sapiens]
 gi|13905126|gb|AAH06850.1| MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Homo
           sapiens]
 gi|27805155|gb|AAO22994.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Homo
           sapiens]
 gi|119584889|gb|EAW64485.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli),
           isoform CRA_b [Homo sapiens]
 gi|157928134|gb|ABW03363.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)
           [synthetic construct]
 gi|157928839|gb|ABW03705.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)
           [synthetic construct]
 gi|741682|prf||2007430A DNA mismatch repair protein
          Length = 756

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|330933250|ref|XP_003304105.1| hypothetical protein PTT_16542 [Pyrenophora teres f. teres 0-1]
 gi|311319518|gb|EFQ87802.1| hypothetical protein PTT_16542 [Pyrenophora teres f. teres 0-1]
          Length = 734

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 196/387 (50%), Gaps = 13/387 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L++ ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIKALAQDVVNKIAAGEIIVAPVHALKELIENAVDAGSTALEILVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+   +D ++I T+GFRGEAL SI  ++HL + +R  +++   
Sbjct: 90  GIDKEDLPILCERFTTSKLKAFEDLTSIGTYGFRGEALASISHIAHLKVTTRTKESSCAW 149

Query: 120 QIAISGEKISSVRPVA--------MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +  K+SS +P             GTI+ V DLF+ +P+R    +S   E   I ++
Sbjct: 150 EAHFADGKLSSPKPGQTAEPKPKAGRQGTIITVEDLFYNVPSRRRAFRSASEEYAKILEL 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V+F+   +  N           +  +RI Q+ G    N  VELN +    
Sbjct: 210 VGRYAVHCEGVAFSCKKMGENSSNSVTVPAAASAKDRIRQIHGSSAANELVELNVEDDRW 269

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +G+     ++     Q  +FIN R+V+   I  ++   YA  +P G +P   L LE
Sbjct: 270 GFKCKGWVSSANYS-AKRTQMLLFINHRSVESPIIKKSVEQTYATFLPKGGHPFFYLSLE 328

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   +  SI+  ++K   S S +    + +      
Sbjct: 329 IEPQRVDVNVHPTKREVHFLNEDEIIAVVCDSIRDNLSKVDTSRSFMTQSLLSNPKVPFA 388

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRL 376
            P            +T  +   +  ++
Sbjct: 389 TPMKPTVPATPGTGDTSNRSVSRAPQI 415


>gi|114585968|ref|XP_001170371.1| PREDICTED: MutL protein homolog 1 isoform 5 [Pan troglodytes]
          Length = 687

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|18255308|gb|AAH21815.1| MutL homolog 1 (E. coli) [Mus musculus]
          Length = 760

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 183/369 (49%), Gaps = 10/369 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +S +          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISISVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMISSFHQDNAPKTH 354
           NVHP K  + F +   I   + Q I+  +   N   +  +  L   +     +   P T 
Sbjct: 306 NVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTTG 365

Query: 355 LPKYATSLT 363
           +   +TS +
Sbjct: 366 VASSSTSGS 374


>gi|119478992|ref|XP_001259525.1| DNA mismatch repair protein Mlh1, putative [Neosartorya fischeri
           NRRL 181]
 gi|119407679|gb|EAW17628.1| DNA mismatch repair protein Mlh1, putative [Neosartorya fischeri
           NRRL 181]
          Length = 759

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 113/410 (27%), Positives = 190/410 (46%), Gaps = 14/410 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIRPLDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSIEVLVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKQFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 149

Query: 120 QIAISGEKISSVRPVAMNP--------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+   +P             GT + V DLF+ +P R    +S   E   I DV
Sbjct: 150 RAHYSDGKLVPPKPGQSAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDV 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    ++F+      +   ++      N  +RI Q+ G    N  VE   + ++ 
Sbjct: 210 VGRYAVHCSGIAFSCRKHGESGAGIST-PAAANTVDRIRQIHGSAVANELVEFQIEDSKL 268

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G      ++        +FIN R+V+   I   +   Y+  +P G +P V + LE
Sbjct: 269 GFRSSGLVTNANYH-VKRTTILLFINHRSVESTAIKRAVEQTYSSFLPKGGHPFVYIDLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   I   I+  + +   S + +    +      + 
Sbjct: 328 IEPQRVDVNVHPTKREVNFLNEDEIIECICDEIRSKLARVDSSRTFLTQTLLPGVTTIEP 387

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
             + +     +   + Q        +      L   D    +    +  +
Sbjct: 388 LNRNNPAAGPSIEGDGQVPRTPAPTKKPYEHSLVRTDSRVRKITSMLPPA 437


>gi|114585958|ref|XP_001170274.1| PREDICTED: MutL protein homolog 1 isoform 3 [Pan troglodytes]
 gi|114585960|ref|XP_001170433.1| PREDICTED: DNA mismatch repair protein Mlh1 isoform 8 [Pan
           troglodytes]
          Length = 756

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|83772756|dbj|BAE62884.1| unnamed protein product [Aspergillus oryzae]
          Length = 734

 Score =  312 bits (800), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 185/380 (48%), Gaps = 16/380 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIRALDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSLEILVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKQFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 149

Query: 120 QIAISGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+ + +P         A   GT + V DLF+ +P R    +S   E   I DV
Sbjct: 150 RAHYSNGKLVAPKPGQPAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDV 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++      N  +RI Q+ G    N  VE   +  + 
Sbjct: 210 VGRYAVHCSGVAFSCRKHGDSGVSIST-PVTANTIDRIRQIHGSAVANELVEFKSEDRKL 268

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                GY     ++        +FIN R+V+   +   I   Y+  +P G +P   + LE
Sbjct: 269 GFRSSGYVTNANYH-VKRTVILLFINHRSVESTAVKRAIEQTYSSFLPKGGHPFAYIDLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P +VDVNVHP K  + F N   I   I Q I+  + +    +S     + +    +  
Sbjct: 328 IEPHRVDVNVHPTKREVNFLNEDEIIECICQEIKSNLTQVD--SSRTFLTQTLLPGVRTM 385

Query: 350 APKTHLPKYATSLTNTQEKL 369
            P    P    +   T +  
Sbjct: 386 EPAPRDPDSTDAEGRTPKTP 405


>gi|126336756|ref|XP_001362984.1| PREDICTED: similar to DNA mismatch repair protein homolog isoform 2
           [Monodelphis domestica]
          Length = 745

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/403 (28%), Positives = 185/403 (45%), Gaps = 7/403 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L EK++N+IAAGE+I+RP+ AIKE+IEN LDA +S ++  +  GG    Q+ DNG G
Sbjct: 8   IRRLDEKVVNRIAAGEVIQRPANAIKEMIENCLDARASAIQVTVREGGLKLIQVQDNGSG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ S+  +     +
Sbjct: 68  IRREDLDIVCERFTTSKLRAFEDLASIATYGFRGEALASISHVAHVTVTSKTAEAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ +  R   LK+   E   I DV+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNVATRRKALKNPSEEYGKILDVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGYT 237
             VSF+          +    TN    + I  + G       +E+          ++G+ 
Sbjct: 188 SGVSFSVKKQGETVPDIRTL-TNATVVDNIRSIFGNAVSRELIEVGCDDPLLAFRMKGFI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   + + YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESSALRKAVESVYAAYLPKNSHPFLYLSLEIAPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S +      +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIEGRLLGANSSRTYFTQTLLPGMAGPVPEGAKSAVG 365

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            +       +++  Q    + +     D          VE  E
Sbjct: 366 ASAPPPGPSDRVSAQHMVRTDSREQKLDAFLQPVSRSSVERPE 408


>gi|126336754|ref|XP_001362893.1| PREDICTED: similar to DNA mismatch repair protein homolog isoform 1
           [Monodelphis domestica]
          Length = 735

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/403 (28%), Positives = 185/403 (45%), Gaps = 7/403 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L EK++N+IAAGE+I+RP+ AIKE+IEN LDA +S ++  +  GG    Q+ DNG G
Sbjct: 8   IRRLDEKVVNRIAAGEVIQRPANAIKEMIENCLDARASAIQVTVREGGLKLIQVQDNGSG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ S+  +     +
Sbjct: 68  IRREDLDIVCERFTTSKLRAFEDLASIATYGFRGEALASISHVAHVTVTSKTAEAKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ +  R   LK+   E   I DV+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNVATRRKALKNPSEEYGKILDVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGYT 237
             VSF+          +    TN    + I  + G       +E+          ++G+ 
Sbjct: 188 SGVSFSVKKQGETVPDIRTL-TNATVVDNIRSIFGNAVSRELIEVGCDDPLLAFRMKGFI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   + + YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESSALRKAVESVYAAYLPKNSHPFLYLSLEIAPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S +      +                
Sbjct: 306 NVHPTKHEVHFLHEDSILERVQQHIEGRLLGANSSRTYFTQTLLPGMAGPVPEGAKSAVG 365

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            +       +++  Q    + +     D          VE  E
Sbjct: 366 ASAPPPGPSDRVSAQHMVRTDSREQKLDAFLQPVSRSSVERPE 408


>gi|261198298|ref|XP_002625551.1| DNA mismatch repair protein [Ajellomyces dermatitidis SLH14081]
 gi|239595514|gb|EEQ78095.1| DNA mismatch repair protein [Ajellomyces dermatitidis SLH14081]
          Length = 842

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 138/571 (24%), Positives = 240/571 (42%), Gaps = 53/571 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG 
Sbjct: 32  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGATSVEILVKDGGLKLLQITDNGH 91

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 92  GIDCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 151

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P A   GT + V DLF+ +P R    +S   E   I DV
Sbjct: 152 KAHYSDGKLVPAKPGQTAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSSSEEYAKILDV 211

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++  S N    +RI Q+ G    +  V  + +    
Sbjct: 212 VGRYAVHCSGVAFSCKKHGDSGVSIST-SMNSTTVDRIRQIHGSAVASELVNFSVEDPRL 270

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   +   I  AY+  +P G +P   L LE
Sbjct: 271 GFRASGWASNANYH-AKRTTILLFINHRSVESTAVRRAIEQAYSNFLPKGGHPFAYLDLE 329

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   I  +IQ+ +     S+ + + + ++ +    +
Sbjct: 330 IEPQRVDVNVHPTKREVNFLNEDEIIASICTAIQQKLATVD-SSRTFMVQTLLPAGRTRS 388

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                  +   +      +      R   N+L+ +D       +     + +    +   
Sbjct: 389 DAMNPNAESPYNDKQPTPRTLSGTKRPYENNLVRTDASMRKITSMLPPATSSQTRPILNG 448

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            +Q           DGL          R+    ++    + +      LT     L    
Sbjct: 449 NSQPQPL-----EEDGLRYESTGREPTRIRLTSVKNLRAAVRSAMHNNLTELFASLTYVG 503

Query: 470 -------------------CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
                                  M  +E  +++G     FG              K N+ 
Sbjct: 504 LVDERRRIAAIQSGVKLFLVDYGMMSNEFFYQIG--LTDFGN-----------FGKINLE 550

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
              R ++D +  ++ T   + R +++ A+ A
Sbjct: 551 SSPR-LVDLLSLAAATERDEYRRQHVAASTA 580


>gi|253577911|ref|ZP_04855183.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850229|gb|EES78187.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 663

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 230/471 (48%), Gaps = 17/471 (3%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           ERPS  +KEL+EN++DA ++ V   I  GGK   +ITDNG GM  +++P+A  RH TSKI
Sbjct: 2   ERPSSIVKELVENAIDAGATAVTVEITDGGKKMIRITDNGGGMERDQVPLAFLRHATSKI 61

Query: 81  S--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
              +D  +I + GFRGEAL SI AV+ + L+++ P   +G +  I+G    S+  +    
Sbjct: 62  EKVEDLEHIASLGFRGEALSSIAAVAQVELITKTPSALSGVRYVINGGVQESLEDMGAPE 121

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF 198
           GT   VR+LF+  PAR  FLKS+  E N ++ ++ ++A+++P++SF +   K  +     
Sbjct: 122 GTTFLVRNLFYNTPARSKFLKSDTTEGNYVSTLMEQLALSHPEISFKYIQNKQVKLH--- 178

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRT 258
            S N N  + I  + G D     +E++ +++ + ++G+ G P  +RGN      +INGR 
Sbjct: 179 TSGNYNVKDVIYNIYGRDITKALLEVSYENDFMKIEGFVGKPEISRGNRTFENYYINGRF 238

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           V+++ I   I  AY   +   ++P V L ++++   +DVNVHP+K  +RF   T + + +
Sbjct: 239 VKNRIIAKGIEDAYKGFLMQHKFPFVSLHIQMEGNDLDVNVHPSKMEVRFARGTEVYDAV 298

Query: 319 IQSIQKAINKKGISTSSVL-----SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
            +++ KA+  + +  +         KK        + P+    +    +   + +     
Sbjct: 299 YETVHKALTTREMIQTVPFGKEEPIKKQQPVVKPGDVPEPFETRRRAEIPEYRPQTVNTA 358

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD--Q 431
           +R+S +  LP    T +E     ++   T   L  A  Q+ +  +  +  +   +    +
Sbjct: 359 SRVSEHTALPRGTVTMAEQAVREQQIYQTRDPLTKAEEQLFEGTLSDKKNEEQPVFSETK 418

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
               E+   E ++   +S     +  +      + E    +  +  E    
Sbjct: 419 QEIAEQKTAEYLKTAVDSEGN--RKQIEQNKNVISE---EIRPQQLELFEE 464



 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 67/269 (24%), Positives = 118/269 (43%), Gaps = 5/269 (1%)

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           + +  +S      + + S   Q+ A +       T++ +   +  +++N+   ++ +   
Sbjct: 398 LFEGTLSDKKNEEQPVFSETKQEIAEQKTAEYLKTAVDSEGNRKQIEQNKNVISEEIRPQ 457

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
                E+     ES + H        QI   Y + Q  D   I+DQHAAHE++ +E+  +
Sbjct: 458 QLELFEEKLLAPESRSRH----QLIGQIFDTYWLVQFEDKFFIIDQHAAHEKVYYERFVK 513

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
            F    + SQ L  P I+ L   E AL+  + +     G + E FG     I  +P+ L 
Sbjct: 514 RFREQTVESQYLSPPLIVSLNLQEEALLKANRKYFEDFGFEIEPFGGKEYCINAVPSNLY 573

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
                +L  +++D +        L     + LATMAC  +++   +M   E N L+ E+ 
Sbjct: 574 GLTEEELFLEMLDNLASEKDKDPL-GIFASRLATMACKAAVKGNNQMSDREANALIDELL 632

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              N   C HGRPT I +  +++EK F R
Sbjct: 633 TLENPYHCPHGRPTIISMTKTELEKKFKR 661


>gi|327355802|gb|EGE84659.1| DNA mismatch repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 842

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 192/410 (46%), Gaps = 16/410 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG 
Sbjct: 32  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGATSVEILVKDGGLKLLQITDNGH 91

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 92  GIDCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 151

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P A   GT + V DLF+ +P R    +S   E   I DV
Sbjct: 152 KAHYSDGKLVPAKPGQTAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSSSEEYAKILDV 211

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++  S N    +RI Q+ G    +  V  + +    
Sbjct: 212 VGRYAVHCSGVAFSCKKHGDSGVSIST-SMNSTTVDRIRQIHGSAVASELVNFSVEDPRL 270

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   +   I  AY+  +P G +P   L LE
Sbjct: 271 GFRASGWASNANYH-AKRTTILLFINHRSVESTAVRRAIEQAYSNFLPKGGHPFAYLDLE 329

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   I  +IQ+ +      +S     + +    +  
Sbjct: 330 IEPQRVDVNVHPTKREVNFLNEDEIIASICTAIQQKLATVD--SSRTFMVQTLLPAGRTR 387

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +   +    +           L   +    + L   D +  +    +  +
Sbjct: 388 SDAMNPNAESPYNDKQPTPRTLSGTKRPYENNLVRTDASMRKITSMLPPA 437


>gi|239607860|gb|EEQ84847.1| DNA mismatch repair protein [Ajellomyces dermatitidis ER-3]
          Length = 842

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 192/410 (46%), Gaps = 16/410 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG 
Sbjct: 32  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGATSVEILVKDGGLKLLQITDNGH 91

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 92  GIDCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 151

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P A   GT + V DLF+ +P R    +S   E   I DV
Sbjct: 152 KAHYSDGKLVPAKPGQTAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSSSEEYAKILDV 211

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++  S N    +RI Q+ G    +  V  + +    
Sbjct: 212 VGRYAVHCSGVAFSCKKHGDSGVSIST-SMNSTTVDRIRQIHGSAVASELVNFSVEDPRL 270

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   +   I  AY+  +P G +P   L LE
Sbjct: 271 GFRASGWASNANYH-AKRTTILLFINHRSVESTAVRRAIEQAYSNFLPKGGHPFAYLDLE 329

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I   I  +IQ+ +      +S     + +    +  
Sbjct: 330 IEPQRVDVNVHPTKREVNFLNEDEIIASICTAIQQKLATVD--SSRTFMVQTLLPAGRTR 387

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +   +    +           L   +    + L   D +  +    +  +
Sbjct: 388 SDAMNPNAESPYNDKQPTPRTLSGTKRPYENNLVRTDASMRKITSMLPPA 437


>gi|149018395|gb|EDL77036.1| rCG26088 [Rattus norvegicus]
          Length = 765

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 170/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 15  IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVIVKEGGLKLIQIQDNGTG 74

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 75  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 134

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 135 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHN 194

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 195 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 253

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I   YA  +P   +P + L LEI P+ VDV
Sbjct: 254 SNANYSVKKCIFL-LFINHRLVESAALKKAIEAVYAAYLPKNTHPFLYLSLEISPQNVDV 312

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 313 NVHPTKHEVHFLHEESILERVQQHIESKL 341


>gi|162457337|ref|YP_001619704.1| DNA mismatch repair protein MutL [Sorangium cellulosum 'So ce 56']
 gi|161167919|emb|CAN99224.1| DNA mismatch repair protein MutL [Sorangium cellulosum 'So ce 56']
          Length = 687

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/320 (34%), Positives = 181/320 (56%), Gaps = 8/320 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  L + + NQIAAGE++ERP+  +KEL+EN+LDA + R+   I GGG    ++ D+G 
Sbjct: 25  RVAILPDDLANQIAAGEVVERPASVVKELVENALDAGARRIRIDIEGGGVGLVRVADDGR 84

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E+  +AV RH TSKI+  DD  +I +FGFRGEALPSI +VS  +L +R    + G 
Sbjct: 85  GMSREDASLAVLRHATSKIARLDDLRSIQSFGFRGEALPSIASVSRFSLRTRRDGESEGT 144

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I I G   + V P     GT+VEVRDLFF +PAR  FL++   E+  ++++ + +A+  
Sbjct: 145 EIRIEGGGAAQVIPCGCAAGTVVEVRDLFFNVPARRKFLRAVGTESAHVSEIAQAVALGE 204

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+   S       +    S+        + + GE+          +   +T++ +   
Sbjct: 205 PGVTLVLSRDGRVAREWLRTSSRAERAR--AMLAGEELAT----CAGQRGPLTVEAFVSR 258

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P   R  A+  ++F+NGR V+D+ +  +I  AY   +  GRYP+  + +++    VDVNV
Sbjct: 259 PERARSGASWLWMFVNGRHVRDRSLARSIALAYGSVLEPGRYPIGAVFIDLPAELVDVNV 318

Query: 300 HPAKSYIRFRNPTIIRNFII 319
           HP K+ +RF +   + + + 
Sbjct: 319 HPQKAEVRFADGRAVADALY 338



 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 1/191 (0%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           ++     AQ+   + + +  DG+  +DQHAA ER+ F ++R  F+   + +Q LL P I+
Sbjct: 497 WRSLRFLAQVRNTFFVCEGPDGIYFLDQHAAAERVTFHRLRASFDGRDVATQKLLFPVIV 556

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                E +L+ E  E + RLG+     G   +A+  +P +L +    +L+RD++DE+  S
Sbjct: 557 QAAPAEVSLVEEAQEAITRLGLDVRPAGAAQLAVHAVPTLLRRAAPERLVRDLVDELSHS 616

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                    ++  LATMAC+GS+R+G  +   E   LL  +++   +  C HGRP  +++
Sbjct: 617 GE-RAFSGAVDLALATMACHGSLRAGDPVAPEEARALLTALDEVDFAGHCPHGRPIVMRV 675

Query: 584 KLSDIEKLFGR 594
              ++E   GR
Sbjct: 676 GWPELEHRVGR 686


>gi|109042257|ref|XP_001087274.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Macaca mulatta]
          Length = 583

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +++ R +I  
Sbjct: 128 ASYSDGKLKGPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEIVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|256370807|ref|YP_003108632.1| putative DNA mismatch repair protein MutL [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009599|gb|ACU52959.1| putative DNA mismatch repair protein MutL [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 544

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 136/600 (22%), Positives = 277/600 (46%), Gaps = 66/600 (11%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I+ LS+ + NQIA+G++I+ P+  +KE++ENS+DA++  ++ ++  GGK+   I D
Sbjct: 1   MTDVIKLLSKNVSNQIASGDVIQNPASILKEILENSIDADAKNIKIILTNGGKNRIHIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G GM+  +   + +R+ TSK++  +D   I T GFRGEAL  I +V+ + L +R   ++
Sbjct: 61  DGIGMSKNDAIQSFERYSTSKLTKIEDLFKISTKGFRGEALSYISSVTQIELETREKTSD 120

Query: 117 TGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
            G ++ I   ++     P+AMN G  + ++++F+ IPA+   LKS  +E   I +   ++
Sbjct: 121 LGIRLIIENGELKYKPFPIAMNKGCSICIKNIFYNIPAKRKNLKSSNLELKNIINEFYKI 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
            +++ +++F     K   + +N      ++ ERI Q+ GE   N  +++ + +  + ++G
Sbjct: 181 VLSHKEINFYLENNKKLLFNLN----KSSYKERIIQIYGEKLKNKLIKIKKTTKLVKIKG 236

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y   P ++       Y+F+N R + +K I + I  +Y   +     P   + L +D  + 
Sbjct: 237 YITHPHYSNSKKLGQYLFLNKRYITNKNIHNAIIASYEGILNKKENPSYFIFLSMDYNKF 296

Query: 296 DVNVHPAKSYIRF--RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
           ++N++P+K+ + F   +   + N I  +I++++    I              +     K 
Sbjct: 297 NINLNPSKTKVNFFYDSEIELCNNISSTIKESLGINNIY-------------NYYYNNKY 343

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
             P    S      K + Q   L  N     ++                         QI
Sbjct: 344 FFPLTEKSDLKVFNKKYKQIKNLFKNQSFYKNETKI----------------HLYKWIQI 387

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           + +Y++     GL++VDQ+ AH+R++++                   +  +L   + + +
Sbjct: 388 YNSYLLGVIKSGLLLVDQNRAHQRILYDFF--------------YKKKSKNLKIDKKSFL 433

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            +    L+ LG K        I ++     + K NI ++L  I +           +   
Sbjct: 434 KKILSKLNYLGFKIFVL-KKKILVQSFSLGIKKTNISKILEKIFEN----------EKMK 482

Query: 534 ENILATMACYG-SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           +NIL    C   S++ G+K+ ++E+  L++++  + N      G    + +    I+KLF
Sbjct: 483 KNILYKYICKYFSLKKGKKISNLEIKGLIKKLFVSNNPYYSPFGEKILLNVSKEKIKKLF 542


>gi|317487374|ref|ZP_07946164.1| DNA mismatch repair protein MutL [Bilophila wadsworthia 3_1_6]
 gi|316921370|gb|EFV42666.1| DNA mismatch repair protein MutL [Bilophila wadsworthia 3_1_6]
          Length = 689

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/407 (30%), Positives = 213/407 (52%), Gaps = 14/407 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++ NQIAAGE++ERP+  +KEL+ENSLDA ++ +E  +  GG+S  ++ DNG G
Sbjct: 17  IHLLSPELRNQIAAGEVVERPASVVKELVENSLDAGATLIEVTLENGGQSLIRVRDNGAG 76

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS--RPPQN--N 116
           + + E+ +AV RH TSKI+  DD  +I +FGFRGEALPSI +VS   + S  R  ++   
Sbjct: 77  IPAAELELAVTRHATSKITSMDDLWHISSFGFRGEALPSIASVSSFRMESAFRASEDAEP 136

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             A I +    ++   P  ++ GT+VE+RDLF TIPARL FLK+   E     +++ R+A
Sbjct: 137 DAAFIQMEHGVLAQQGPSGLHKGTVVEIRDLFATIPARLKFLKAPATEQKRAQELLTRLA 196

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +    F F        +        +  ER+S +  +      +  +  +N+I + G 
Sbjct: 197 LTHTDAGFIFLAGTREVLRFPA---GQSLQERLSVIWPDSVTETLLPFDRTTNDIRVHGL 253

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P   +   ++  +++NGR V DK IL  +R AY   +    YP +VL +++ P +VD
Sbjct: 254 VSPPGQAQPRGDRMLLYVNGRAVNDKVILRAVREAYKGRLLSKEYPQIVLFMDLPPEEVD 313

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI-----STSSVLSKKMISSFHQDNAP 351
           VNVHPAK  +RFR+   +   +++++++A+ +        +  S    +   ++      
Sbjct: 314 VNVHPAKIEVRFRDERSVFGAVLRAVEEAVVRNLPTGDLDAAPSGEEARHAPAYEPKPLG 373

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
                     +   Q+ L   ++  + + + P+ +   SE +   E 
Sbjct: 374 FWGEADRERIMRPRQQPLIPPDHEETPSAVPPASERPASEPDSVPEP 420



 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 112/298 (37%), Gaps = 18/298 (6%)

Query: 301 PAKSYIRFRNPTIIRN-FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           P  S      P  +    +        +K   + ++    +   +F     P        
Sbjct: 404 PPASERPASEPDSVPEPLLYGEEGLPWDKVPDNHAAPSFHEAPQAFAAPQPPTAGAAPLP 463

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            +  +   +     NR   ++    +     E    V          G     + ++   
Sbjct: 464 ETAPHAAVQP-PAANRARPSEPEQPEIEQLGEGQVRVGPYVYMGQIGGTYL--LLRDIRN 520

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            +    L+I+DQHAAHER++  ++     S    SQ L+ P    L   E   I E  E 
Sbjct: 521 GRDNASLLILDQHAAHERVLVSRIEAGGFSG--MSQPLVLPLEYTLHPAERERIQEFHES 578

Query: 480 LHRLGIKA---ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
           L  LG +    E+     + +R +P +L +    + +R+++            ++ + ++
Sbjct: 579 LSALGFELALREQGAGTVLEVRAVPPLLERAAAGEFIREVLA---------GRKEDLHSL 629

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ATMAC  +I++G  +   E   L+ +     N   C HGRP  ++   SD++K+F R
Sbjct: 630 WATMACKAAIKAGDALAPDEAVNLIAQWLMTENRQFCPHGRPCVLQWGTSDLDKMFKR 687


>gi|114585962|ref|XP_001170390.1| PREDICTED: MutL protein homolog 1 isoform 6 [Pan troglodytes]
          Length = 725

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|67515689|ref|XP_657730.1| hypothetical protein AN0126.2 [Aspergillus nidulans FGSC A4]
 gi|40746148|gb|EAA65304.1| hypothetical protein AN0126.2 [Aspergillus nidulans FGSC A4]
 gi|259489678|tpe|CBF90147.1| TPA: DNA mismatch repair protein Mlh1, putative (AFU_orthologue;
           AFUA_5G11700) [Aspergillus nidulans FGSC A4]
          Length = 744

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 139/558 (24%), Positives = 239/558 (42%), Gaps = 39/558 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  KIRALDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSIEILVKEGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKEFEDLSSIATYGFRGEALASISHIAHLTVTTKTADSSCAW 149

Query: 120 QIAISGEKISSVRPVAMNP--------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +  K+   +P             GT + V DLF+ +P R    +S   E   I DV
Sbjct: 150 RAHYADGKLVPPKPGQSAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDV 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL--NEKSN 229
           + R A+    V+F+          ++  +   N  +RI Q+ G    N  VE    ++  
Sbjct: 210 VGRYAVHCSGVAFSCRKHGDAGVSIST-AVALNTIDRIRQIHGSAVANELVEFSVKDEKL 268

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
             T  G      ++        +FIN R+V+   I   +   YA  +P G +P V + LE
Sbjct: 269 GFTSSGLVTNANYH-VKRTTILLFINHRSVESTAIKRAVEQTYASFLPKGGHPFVYIDLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P ++DVNVHP K  + F N   I + I   I+  +++   S+ + L++ ++ S     
Sbjct: 328 IEPHRLDVNVHPTKREVNFLNEDEIIDNICAEIRSKLSQVD-SSRTFLTQTLLPSIQTPK 386

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                    A   T    K   + + + T+  +       S        +          
Sbjct: 387 RSSQVQDADAAPKTPAPTKKPYENSLVRTDSRVRKITSMLSPATSQPPSATLNLEGQLEN 446

Query: 410 CAQIHQNYIISQTTDG-------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
              +  + +I  TTD          + +  AA    + + + +   S        +   I
Sbjct: 447 TQTVLDDGLIYTTTDREPLKIALTSVKNLRAAVRSSMHQSLTETIASHTYVGLVDVNRRI 506

Query: 463 IDLLEGECALIMEH----DEDLHRLGIKAERFGP-NAIAIREIPAILSKKNIPQLLRDII 517
             +  G    ++++     E  ++LG     FG    I +   P ++          D++
Sbjct: 507 AAVQAGVKLYLIDYGMFCAEFFYQLG--LTDFGNFGTIQLEPPPKLI----------DLL 554

Query: 518 DEIIDSSTTYTLQDRIEN 535
               +S      +D  E 
Sbjct: 555 HIAAESELQQASEDYEEK 572


>gi|313900881|ref|ZP_07834371.1| DNA mismatch repair protein, C-terminal domain protein [Clostridium
           sp. HGF2]
 gi|312954301|gb|EFR35979.1| DNA mismatch repair protein, C-terminal domain protein [Clostridium
           sp. HGF2]
          Length = 695

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/343 (36%), Positives = 201/343 (58%), Gaps = 7/343 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + N IAAGE++ERP   +KEL+EN +DA +S +E  I+ GG +   I D+G 
Sbjct: 3   RINRLDEHLSNMIAAGEVVERPQGIVKELVENCIDAHASNIEIQISQGGIATITIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A +RH TSK+ +  D  NIHT GFRGEALPSI +VSH+ L  R     +  
Sbjct: 63  GMDPEDATLAFERHATSKLKEVNDLWNIHTMGFRGEALPSIASVSHVLL--RTNDGTSST 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I+  K+ S RP     GT++E+++LF   PAR   LKS Q E +LI+DV+++ A+++
Sbjct: 121 EVEINYGKLISARPCGTPKGTMIEIQNLFQKTPARFKHLKSPQYEFSLISDVVQKFALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F  S      +K      +GN  E + Q+ G D   +A+ L+    +  ++GY   
Sbjct: 181 PEIGFCLSHDGRTVFKTK---GSGNLLEVLMQIYGRDSAKSAISLDGSDQDYKIKGYIMQ 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR       ++INGR +++  +   I  AY+  +P  RYP+VV+ L +D + VDVNV
Sbjct: 238 PQFNRATKYYMLLYINGRMIRNYHLQKAILDAYSPYMPKDRYPIVVIDLLMDAQLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI 342
           HP+K  IR      +   + ++I+KA+ ++       ++K+ +
Sbjct: 298 HPSKWEIRLSKEKQLEKLLYETIRKALQEQLEVPRVNITKETV 340



 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 125/330 (37%), Gaps = 34/330 (10%)

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           D  +HP K+     +   +R  I     K   K+  +     +K+++    ++ A     
Sbjct: 368 DSFIHPEKNEKPSLDMEELRRKIE--ADKNRRKESAAPIQPKTKELLPEIREETASYEPE 425

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE------------------ 397
              +      +  + +Q       ++LP+         + +E                  
Sbjct: 426 DSTSVKAVTEEADVKVQHEDTDKTEVLPAAHTGSEAHTEAIETDISSDAAVAYKEISQSE 485

Query: 398 -------------ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                        +             Q H  YI+++   GL I+DQHAA ER  +E +R
Sbjct: 486 ELVYEKKAEVEQPQPLNPSLPQLRVIGQFHSCYILAEGEKGLYIIDQHAAQERYHYEIIR 545

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL 504
           +        +Q LL P  I+      +   + +  L +LGI  E FG +    R++P  +
Sbjct: 546 KQILDGNNDTQPLLLPITIESTISAVSQADDLNALLEQLGIHLEVFGDHTFVCRQLPLWM 605

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
                   L D+ID I +     +L    ++ +ATMAC+ SIR  R +   EM R++ ++
Sbjct: 606 KDVEEEAFLCDMID-IWEKDKEISLDKLRKHAIATMACHSSIRFNRSLTLDEMKRVIEDL 664

Query: 565 EKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
                   C HGRPT I ++   +   F R
Sbjct: 665 AHCEQPFHCPHGRPTMICMEDKALIHEFER 694


>gi|41054934|ref|NP_956953.1| DNA mismatch repair protein Mlh1 [Danio rerio]
 gi|34785440|gb|AAH57507.1| MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Danio
           rerio]
          Length = 724

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGEII+RP+ AIKE++EN LDA+S+ ++  +  GG     I DNG G
Sbjct: 5   IRRLDETVVNRIAAGEIIQRPANAIKEMMENCLDAKSTNIQITVKEGGLKLILIQDNGTG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   DD S+I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 65  IRKDDMEIVCERFTTSKLKSFDDLSSIATYGFRGEALASISHVAHVTITTKTADAKCAYR 124

Query: 121 -IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                G+  S  +P A N GT++ V DLF+ +  R   LKS   E + I +V+ R AI  
Sbjct: 125 ANYCDGKLKSPPKPCAGNQGTLISVEDLFYNVSTRRKALKSPSEEYSRIVEVVSRYAIHN 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL--QGYT 237
              SF+          +     N +  + I  V G       +E+  +  +     +GY 
Sbjct: 185 SGKSFSVKKQGEMVADVKTLP-NASVLDNIRVVFGVAVSRELIEVECEDQKFAFKVKGYI 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T Y   +P   +P + L LEI P+ +DV
Sbjct: 244 SNANYS-VKKCILILFINHRLVESSALKKAIETVYTAYLPKNTHPFLYLSLEIAPQNIDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   I + I+  +
Sbjct: 303 NVHPTKHEVHFLHEDSIIESIQKHIENKL 331


>gi|257051097|ref|YP_003128930.1| DNA mismatch repair protein MutL [Halorhabdus utahensis DSM 12940]
 gi|256689860|gb|ACV10197.1| DNA mismatch repair protein MutL [Halorhabdus utahensis DSM 12940]
          Length = 709

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/363 (30%), Positives = 185/363 (50%), Gaps = 11/363 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L +  I +IAAGE++ERP+  +KEL+ENSLDA++SRV   +  GG    +++D+G G
Sbjct: 4   IRELDQTTIERIAAGEVVERPASVVKELLENSLDADASRVRVAVEAGGTESIRVSDDGVG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           MT  +   AV+ H TSKI D  D  + + T GFRGEAL +I AVS +T+ +RP   + G 
Sbjct: 64  MTEGDARAAVREHTTSKIRDISDLESGVGTLGFRGEALHAISAVSRMTITTRPRGGDRGT 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ + G ++++V       GT VE+ DLF+ +PAR  +L  +  E + +  V+R  A+A 
Sbjct: 124 RLRVEGGEVTTVEAAGCPEGTTVEIADLFYNVPARRKYLSRDATEFDHVNTVVRNYALAN 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI----TLQG 235
           P V+          +     +   +  E +  V G +   + ++++ +         + G
Sbjct: 184 PAVAVALEHDGRETF---ATTGGDSLRETVMAVYGREVAESMIDVDARELPAGPLDAIDG 240

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P  NR +      F+NGR V+     + I  AY   +   RYP  VL L +    V
Sbjct: 241 LVSHPETNRADREYVATFVNGRYVRSSAARNAIVEAYGNQLSPDRYPFAVLDLSLPAGTV 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNVHP K  +RF +   +R  +  ++++ + + G+  S     +  +    +  P    
Sbjct: 301 DVNVHPRKMEVRFADEAGLREQVRAAVEETLLENGLIRSGAPRGQS-APEQTEIDPTATT 359

Query: 356 PKY 358
           P  
Sbjct: 360 PDS 362



 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 3/257 (1%)

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +  S+             +    +    +   +    +   ++ +   T  E  +   E 
Sbjct: 443 EPDSAAPPAETGSPASAGHGEGTSQGSGEPERRGAGDAETAVVDAGSQTRLESGEEPLEQ 502

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                       Q  + Y++++T  GLV++DQHAA ER+ +E++R  F     T+Q L  
Sbjct: 503 TFDSLPSMRVLGQFQETYVVAETDTGLVLIDQHAADERINYERLRDAFAGET-TTQALAQ 561

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P  IDL   E +L  +    L RLG  AER     +A+  +P+++++   P+LLRD++  
Sbjct: 562 PVEIDLTARESSLFEDFQAALARLGFSAERVDDRTVAVTTVPSLVAETADPELLRDVLSS 621

Query: 520 IIDSST--TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            +DS +    T++   E +LA +ACY SI     +    +  LL  +E   N   C HGR
Sbjct: 622 FVDSDSDPGATVEAAAEAVLADLACYPSITGNTSLTEGSIVDLLERLEACENPYACPHGR 681

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  +++   ++ + F R
Sbjct: 682 PVVVEIDADELAERFER 698


>gi|310795119|gb|EFQ30580.1| DNA mismatch repair protein MutL [Glomerella graminicola M1.001]
          Length = 743

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 190/396 (47%), Gaps = 16/396 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIENS+DA ++ +E ++  GG    QITDNG 
Sbjct: 31  RIRALDPNVVNKIAAGEIIVAPVNALKELIENSVDAGATALEVLVKEGGLKLLQITDNGC 90

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +RH TSKI+  +D ++I T+GFRGEAL SI  ++HL++ ++  ++    
Sbjct: 91  GIQKEDLEILCERHTTSKITAFEDLASIATYGFRGEALASISHIAHLSVTTKTRESECAW 150

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K++          +P A   GT + V D+F+ IP R    +S   E N I D+
Sbjct: 151 RATYLDGKLAPAKPGQSAEPKPTAGRQGTQISVEDMFYNIPTRRRAFRSPGEEFNKIIDI 210

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R AI    V+F+      +   ++ Q++     +RI Q+ G    N  +  +      
Sbjct: 211 VGRYAIHCKGVAFSCKKHGESGASVSVQASATEV-DRIRQIYGSGVANELMHFSTSEDRW 269

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R V    I   +   Y+  +P G  P + L LE
Sbjct: 270 GFKATGWATNANYSIKKTTFL-LFINHRCVDSTSIKKALEQLYSSFLPKGGRPFIYLSLE 328

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           IDP +VDVNVHP K  + F N   I   I + I+  + +     S     + +       
Sbjct: 329 IDPARVDVNVHPTKQEVHFLNEDEIIQSICEHIRSKLAEVD--ASRTFMTQSLLPGSHMM 386

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
              +         T  +E    +  R ++N L+ +D
Sbjct: 387 DVTSQDEGDGVPATPARETPGSKRPRRNSNSLVRTD 422


>gi|293400025|ref|ZP_06644171.1| DNA mismatch repair protein HexB [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306425|gb|EFE47668.1| DNA mismatch repair protein HexB [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 692

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/341 (35%), Positives = 192/341 (56%), Gaps = 7/341 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + N IAAGE++ERP   +KEL+EN +DA +S VE  I  GG     I D+G 
Sbjct: 3   KINRLDEHLSNMIAAGEVVERPMGIVKELVENCIDASASHVEIQILQGGIDTITIIDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+  +A +RH TSK+ +  D  NIHT GFRGEALPSI +VSH+ L  R        
Sbjct: 63  GMDAEDATLAFERHATSKLKEVNDLWNIHTMGFRGEALPSIASVSHVIL--RTNNGTDAT 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I+   + S +P     GT++EV++LF   PAR   LKS Q E +LI+DV+++ A+++
Sbjct: 121 EVEINYGTLVSAKPCGTPKGTMIEVKNLFQKTPARFKHLKSPQYEFSLISDVVQKFALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++ F  S      +K      NG+  E + Q+ G D    A+ L+    +  + G+   
Sbjct: 181 PEIGFVLSHDGRTVFKTR---GNGSLLEVLMQIYGRDSAKTAIALDGNDMDYHIGGFIMQ 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR       ++INGR +++  +   +  AYA  +P  RYP+ ++ +E+D + VDVNV
Sbjct: 238 PNFNRATKYYMLLYINGRMIRNYHLQKAVMDAYAPYLPKERYPIAIINMEMDAQLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
           HP+K  IR      +   + ++I  A+ +        ++++
Sbjct: 298 HPSKWEIRLSKEKQLEKLVYETISNALKEHLQVPKVNVNRE 338



 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 133/315 (42%), Gaps = 11/315 (3%)

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           ++  Q+ V++  +K     + P  I+   I   ++      I  +    +K   +     
Sbjct: 378 LNMEQLKVDIEKSKEEAHIKYPQPIKRECITETKETETIYKIRDAVDTKQKQTHNVGIKQ 437

Query: 350 APKTHLPKYA----------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
            P     K            T  T   E+ F      S  ++      T  + +   ++ 
Sbjct: 438 QPGNEEKKEEKEQVKEQEMLTPSTANVEQAFHPHMETSKLEVPKKQVQTMEQSDLIHKKP 497

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                       Q H  YII++   GL I+DQHAA ER  +E +R+   + K  +Q LL 
Sbjct: 498 RNPSLPQLRVIGQFHNCYIIAEGEKGLYIIDQHAAQERYHYEVIRESILAGKNDAQPLLL 557

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P  I+        + + ++ + +LGI  E FG   +  RE+P  +        L+D+ID 
Sbjct: 558 PITIEASVSAIMQLEDLNKVMEQLGIHLESFGEKTLVCRELPVWMKDVEEAAFLQDMID- 616

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           I +     +L+   ++ +ATMAC+ SIR  R +   EMNR++ ++ K      C HGRPT
Sbjct: 617 IWERDKALSLEKLRKHAIATMACHSSIRFNRSLTMEEMNRVIEDLGKCEQPFHCPHGRPT 676

Query: 580 FIKLKLSDIEKLFGR 594
            I ++  D+   F R
Sbjct: 677 LICMEEKDLIHDFER 691


>gi|46136425|ref|XP_389904.1| hypothetical protein FG09728.1 [Gibberella zeae PH-1]
          Length = 737

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 140/543 (25%), Positives = 224/543 (41%), Gaps = 50/543 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KELIEN++DA ++ ++ +   GG    QITDNG 
Sbjct: 42  RIKALDPNVVNKIAAGEIIVAPVHALKELIENAVDAGATSLDVLAKEGGLKLLQITDNGC 101

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +RH TSKI+  +D S I T+GFRGEAL SI  ++HL++ ++   ++   
Sbjct: 102 GIQKDDLAILCERHTTSKITTFEDLSAIETYGFRGEALASISHIAHLSVTTKTKDSDLAW 161

Query: 120 QIAISGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K++  +P        VA   GT + V DLFF I  R    +S   E N I D+
Sbjct: 162 RAHYYEGKLAPAKPGQSAEPKGVAGRQGTQITVEDLFFNIATRRRAFRSPSDEFNKIIDM 221

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V FT          ++ Q+ +    +RI Q+ G    N  +E +      
Sbjct: 222 VGRYAVHCKGVGFTCKKAGEASTNLSIQA-HATVIDRIRQIHGSAVANELLEFSVSEARW 280

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +GYT    ++        +FIN R V+   I   +   YA  +P   +P + L LE
Sbjct: 281 GFRAEGYTTNANYS-VKKTTILLFINHRCVESTHIKKAVEQTYANFLPKNGHPFIYLSLE 339

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           IDP +VDVNVHP K  + F N   I   I  +I+  +    + TS     + +       
Sbjct: 340 IDPARVDVNVHPTKREVHFLNEDEIIQSICAAIESKLA--AVDTSRTFMTQTLLP----G 393

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
           A        A S      +    + R  +NDL+ +D       +       +        
Sbjct: 394 AKAIESTSQAESDGTPSRRTPATKKRRYSNDLVRTDTAERKITSMFARAGPSESTSSMDR 453

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR-----------------QDFNSTKI 452
                  +   +       VD+     RL   K                          +
Sbjct: 454 AGDTIPIHEPLEYET----VDRELVQCRLNSVKYLREEVREDMHLELTEIFANHTFVGVV 509

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI-KAERFGPNAIAIREIPAILSKKNIPQ 511
             Q  L      +            E  ++LG+     FG     I+  PA+    ++ +
Sbjct: 510 DEQRRLAAIQGGVKLYLIDYGRTCYEYFYQLGLTDFGNFG----TIKFAPAL----DLRE 561

Query: 512 LLR 514
           LLR
Sbjct: 562 LLR 564


>gi|320120485|gb|EFE28653.2| DNA mismatch repair protein MutL [Filifactor alocis ATCC 35896]
          Length = 677

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 120/405 (29%), Positives = 195/405 (48%), Gaps = 12/405 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E  I +IAAGE++ERPS  IKEL+ENS+DA +  +   I  GGK + +++D+G G
Sbjct: 5   IFILDEFTIGKIAAGEVVERPSSVIKELVENSIDANAKNIVIEIKDGGKQYIRVSDDGVG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+     RH TSKI   +D  N+ T GFRGEAL SI AVS  TLM++      G++
Sbjct: 65  IPHAELSKVFLRHSTSKIQKIEDLENLQTCGFRGEALSSICAVSKTTLMTKTSDEEWGSR 124

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G K  S   + ++ GT + + DLFF +PAR  F+KS   E   I  ++ R+A+  P
Sbjct: 125 VFVEGGKYISTEKIGLSQGTTLVIEDLFFNVPARKKFMKSSPAEAMAINQIVCRLAMGNP 184

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGI 239
            + F   +       +     +G     I  + G++ I            E+TL GY   
Sbjct: 185 SIRFKLISNNK---VIVSTVGDGTLENAIRSIYGKNAIEQMFYAKRNFEQEVTLYGYLSK 241

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            +  + N      F N R V+D  +   +  AY  TIP+G++P  VL ++++P Q+D NV
Sbjct: 242 TSMYQTNRRMQNFFFNRRYVEDISVARAMEDAYKGTIPIGKFPSCVLFIDLNPAQIDFNV 301

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  +++ +   + + +   ++ A+ +K              SF ++        K  
Sbjct: 302 HPNKLNVKYDSELRLEDKVYAFVRDALFQKSN------HLIPKGSFVREEKTVEPPVKVQ 355

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             ++ T+EK   +   ++       D     E      ES+   +
Sbjct: 356 VPISVTEEKESGESQEVAVFSFEKKDATIPFEKILFPNESDTKEF 400



 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 120/229 (52%), Gaps = 1/229 (0%)

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
           +EK   +E+ ++      S+    +      +E +  +Y+      ++   Y+I    + 
Sbjct: 447 REKNRAKESTVAERGKEISEPVVQNFLQTQEKEEDILNYEQLHYVGRVFSTYLIMTKEER 506

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           + ++DQHAAHER++FE+     +  +++SQ LL P +++L   +  L+  + +++ +LG 
Sbjct: 507 MYLIDQHAAHERVLFERYMVLLHKDELSSQQLLNPILLELSYEDATLVEMYRDEIQKLGF 566

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             +  G   I IR +P    +    Q + +II+ + ++      ++ I+ + AT AC  +
Sbjct: 567 DFDFLGEKVIVIRGVPVFFQETQGEQFMYEIIELLQENKNLENYEEFIDKV-ATKACRAA 625

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I++  ++   E+  LL+++ +  N   C HGRP FI++K  D+EK+F R
Sbjct: 626 IKANDRIMDTEVEALLKDLNQCDNKYTCPHGRPVFIEVKKYDLEKMFKR 674


>gi|291231519|ref|XP_002735708.1| PREDICTED: MutL protein homolog 1-like [Saccoglossus kowalevskii]
          Length = 790

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 115/329 (34%), Positives = 179/329 (54%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+SS ++  +  GG    QI DNG G
Sbjct: 7   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSSNIQVTVKSGGLKLIQIQDNGTG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D  NI T+GFRGEAL SI  V+H+T+ +R   +    +
Sbjct: 67  IRKEDMNIVCERFTTSKLRKFEDLQNIETYGFRGEALASISHVAHVTITTRTADSKCAFK 126

Query: 121 -IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              I G+   +V+P A N GT + V DLF+ +  R   LKS   E N I++VI R AI  
Sbjct: 127 GNYIDGQLKGAVKPCAGNKGTQITVEDLFYNVSTRRKALKSPGEEHNKISEVISRYAIHN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             V+FT      +   +   S+     + I  + G       +E++ ++++    + GY 
Sbjct: 187 AGVAFTLKKQGESVADVRTPSSASKI-DNIRTIYGASVARELLEVSFQNSKLSFKVSGYV 245

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +  TI   Y   +P   +P + L LEI P+ VDV
Sbjct: 246 SNANYSVKKCIFL-LFINHRLVESSALRKTIEAVYTSYLPKNSHPFLYLSLEISPQNVDV 304

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +  +I   I Q +++ +
Sbjct: 305 NVHPTKHEVHFLHEDMILEEIQQCVEQKL 333


>gi|302768865|ref|XP_002967852.1| hypothetical protein SELMODRAFT_408722 [Selaginella moellendorffii]
 gi|300164590|gb|EFJ31199.1| hypothetical protein SELMODRAFT_408722 [Selaginella moellendorffii]
          Length = 696

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 176/370 (47%), Gaps = 9/370 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL E ++N+IAAGE+I+RP+ A+KEL+ENSLDA ++ V  ++  GG    QITDNG 
Sbjct: 8   RIRKLEESVVNRIAAGEVIQRPASALKELLENSLDAGATVVSVIVKDGGLKLIQITDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSKI+  +D   + T GFRGEAL S+  V+HLT+ +       G 
Sbjct: 68  GIRYEDLPILCERHTTSKITAFEDLQKVSTLGFRGEALASMTFVAHLTVTTMTEGQTHGY 127

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     G      RP A   GT + V +LF+ + AR    K+   E   + DVI + +I 
Sbjct: 128 RASYKDGVMEGDPRPCAAVKGTQIMVENLFYNVTARRKSFKNPSDEYARVVDVISKYSIQ 187

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN----EITLQ 234
            PKV F+       R  +       +  E I  V G       +E+    N       + 
Sbjct: 188 NPKVGFSCKKFGDARADVQTPGNTSSL-EAIRAVYGPGTSRELIEIKTSKNDSSDFFEMN 246

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY     ++        +FIN R V    +   I   YA  +P    P + + + + P  
Sbjct: 247 GYISSANYS-AKRTTMILFINDRLVDCAPLKRAIEVVYAAVLPKASKPYIYMSIRLPPEH 305

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP K  + F N   +   I  ++++ + +   S +      + ++F     P + 
Sbjct: 306 VDVNVHPTKKEVSFLNQESLIEAIQTAVEQELLQSNKSRTFYAQTSLEAAFLPQGQPASQ 365

Query: 355 LPKYATSLTN 364
               ++    
Sbjct: 366 AENKSSQKAP 375


>gi|220678860|emb|CAX13351.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Danio
           rerio]
          Length = 725

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGEII+RP+ AIKE++EN LDA+S+ ++  +  GG     I DNG G
Sbjct: 6   IRRLDETVVNRIAAGEIIQRPANAIKEMMENCLDAKSTNIQITVKEGGLKLILIQDNGTG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 66  IRKDDMEIVCERFTTSKLQSFEDLSSIATYGFRGEALASISHVAHVTITTKTADAKCAYR 125

Query: 121 -IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                G+  S  +P A N GT++ V DLF+ +  R   LKS   E + I +V+ R AI  
Sbjct: 126 ANYCDGKLKSPPKPCAGNQGTLISVEDLFYNVSTRRKALKSPSEEYSRIVEVVSRYAIHN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL--QGYT 237
              SF+          +     N +  + I  V G       +E+  +  +     +GY 
Sbjct: 186 SGKSFSVKKQGEMVADVKTLP-NASVLDNIRVVFGVAVSRELIEVECEDQKFAFKVKGYI 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T Y   +P   +P + L LEI P+ +DV
Sbjct: 245 SNANYS-VKKCILILFINHRLVESSALKKAIETVYTAYLPKNTHPFLYLSLEIAPQNIDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   I + I+  +
Sbjct: 304 NVHPTKHEVHFLHEDSIIESIQKHIESKL 332


>gi|121713708|ref|XP_001274465.1| DNA mismatch repair protein Mlh1, putative [Aspergillus clavatus
           NRRL 1]
 gi|119402618|gb|EAW13039.1| DNA mismatch repair protein Mlh1, putative [Aspergillus clavatus
           NRRL 1]
          Length = 751

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 112/343 (32%), Positives = 175/343 (51%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIRPLDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSIEVLVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKQFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 149

Query: 120 QIAISGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+   +P         A   GT + V DLF+ +P R    +S   E   I DV
Sbjct: 150 RAHYSDGKLVPPKPGQSAEPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDV 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++      N  +RI Q+ G    N  VE   + ++ 
Sbjct: 210 VGRYAVHCSGVAFSCRKHGESGAGIST-PAAANTTDRIRQIHGSAVANELVEFQVEDSKL 268

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G      ++        +FIN R+V+   I   +   Y+  +P G +P V + LE
Sbjct: 269 GFRSSGLVTNANYH-VKRTVILLFINHRSVESTAIKRAVEQTYSSFLPKGGHPFVYIDLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I+P +VDVNVHP K  + F N   I   I   I+  + +   S
Sbjct: 328 IEPHRVDVNVHPTKREVNFLNEDDIIESICSEIRSKLAQVDSS 370


>gi|255720707|ref|XP_002545288.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240135777|gb|EER35330.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 731

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 122/418 (29%), Positives = 199/418 (47%), Gaps = 20/418 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+KL E +IN+IAAGEII +P+ A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 8   TIKKLDESVINKIAAGEIIIQPANALKEMLENSIDANATMIDILVKDGGLKLLQITDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+S  +D  +I T+GFRGEAL SI  +S L+++++   +N   
Sbjct: 68  GINKVDLPLLCERFATSKLSKFEDLESIATYGFRGEALASISHISRLSVITKQQDSNLAY 127

Query: 120 QIAISGEKIS-----------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +      K+              RP A   GT + V DLF+ IP+RL  LKS+  E + I
Sbjct: 128 KAFYMNGKLCGANFKPGAKSTEPRPTAGKVGTQIIVEDLFYNIPSRLRGLKSKSDEFSKI 187

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-- 226
            D++ R AI    V F+         ++N +       ERI  V G    N  +++    
Sbjct: 188 LDIVGRYAIHCGDVGFSCKKFGDPLQQLNTRPKLP-IKERIRLVYGSAIANELLDVENIK 246

Query: 227 --KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
             +   + + G      +N     Q   FIN R V    +   I + +   +P G +P  
Sbjct: 247 EEELGLMKVSGVLTNANYNNKKKIQPIFFINHRLVTCDPLKKAINSIFQFFLPKGSHPFY 306

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L LEI P  +DVNVHP K  +RF N   I + I+  +   ++     TS     + + +
Sbjct: 307 YLSLEIRPDNLDVNVHPTKREVRFLNEDEIIDVIVSKVHGILSSVD--TSRKFKTQTVVT 364

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
              +      +    + +T    K + QEN++   D       ++ +  +     E  
Sbjct: 365 KRPNEEIDEGMELPRSQVTQPSLKKYRQENKMVRVDSSQPKISSFMQSQEAGSYHEHM 422


>gi|309775010|ref|ZP_07670025.1| DNA mismatch repair protein HexB [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917228|gb|EFP62953.1| DNA mismatch repair protein HexB [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 708

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 149/486 (30%), Positives = 232/486 (47%), Gaps = 11/486 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E + N IAAGE++ERP   +KELIEN +DA +  VE  I+ GG +   I D+G 
Sbjct: 3   RINRLDEHLSNMIAAGEVVERPQGIVKELIENCIDAHAETVEIQISQGGIASITIIDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM +E+  +A +RH TSK+ +  D  NIHT GFRGEALPSI +VSH+ L  R    NT  
Sbjct: 63  GMDAEDATLAFERHATSKLKEVNDLWNIHTLGFRGEALPSIASVSHVLL--RTNDGNTST 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ IS  K+ S RP     GT++E+++LF   PAR   LKS Q E +LI+DV+++ A+++
Sbjct: 121 EVEISYGKLVSARPCGTPKGTMIEIQNLFQKTPARFKHLKSPQYEFSLISDVVQKFALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P + F  S      +K      +GN  E + Q+ G D   +A+ L+    +  ++GY   
Sbjct: 181 PDIGFCLSHDGRTVFKTK---GSGNLLEVLMQIYGRDSAKSAIALDGSDQDYKIKGYIMQ 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P FNR       ++INGR +++  +   I  AY+  +P  RYP+VV+ L +D + VDVNV
Sbjct: 238 PQFNRATKYYMLLYINGRMIRNYHLQKAILDAYSPYMPKERYPIVVIDLIMDAQLVDVNV 297

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--FHQDNAPKTHLPK 357
           HP+K  IR      +   + ++I+KA+ ++    S  ++K+ +      Q+         
Sbjct: 298 HPSKWEIRLSKEKQLEKLLYETIRKALQEQLEVPSVNITKETVKEKVEEQELQFTYERDD 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSD-DPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               L       F    ++    L   +     + D    +E       +        Q 
Sbjct: 358 NIKKLHEEVNNSFTHPEKIEKPALDMEELRKQIAIDRTQKKEVNIPVQPMTREIVSEVQE 417

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
             I    +   +    A  E  I EK      +  + S    T E               
Sbjct: 418 ETIPYPEEEKSLSQIVADKEVSIEEKAVDSPTN-SLDSGLEKTTEAPISHSDAGQDEEPL 476

Query: 477 DEDLHR 482
            E L +
Sbjct: 477 REKLEK 482



 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 121/291 (41%), Gaps = 2/291 (0%)

Query: 304 SYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
           +         +   I+   + +I +K + + +      +    +     +   +    L 
Sbjct: 419 TIPYPEEEKSLSQ-IVADKEVSIEEKAVDSPTNSLDSGLEKTTEAPISHSDAGQDEEPLR 477

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTT 423
              EK   +   ++  ++  + +  Y +      +             Q H  YI+++  
Sbjct: 478 EKLEKDPAENTEIAFKEIKQTQELQYEKTAQKPHQPLNPSLPQLRVIGQFHNCYILAEGE 537

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            GL I+DQHAA ER  +E +R    S    +Q LL P  I+      + + E +  L ++
Sbjct: 538 KGLYIIDQHAAQERYHYEIIRNQILSGNTDTQPLLLPITIESTISAVSQVEELNGLLEQI 597

Query: 484 GIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           GI  E FG +    R++P  +        L D+ID I +     +L    ++ +ATMAC+
Sbjct: 598 GIHLEVFGDHTFVCRQLPLWMKDVEEEAFLCDMID-IWEKDKEISLDKLRKHAIATMACH 656

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            SIR  R +   EM R++ ++ +      C HGRPT I ++   + K F R
Sbjct: 657 SSIRFNRSLTLEEMKRVVDDLGRCEQPFHCPHGRPTMICMEDKALIKEFER 707


>gi|115387545|ref|XP_001211278.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195362|gb|EAU37062.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 745

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 112/343 (32%), Positives = 174/343 (50%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 30  RIRALDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSLEILVKDGGLKLLQITDNGH 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 90  GIDRDDLPILCERFTTSKLKHFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 149

Query: 120 QIAISGEKISSVRPVAMNP--------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+   +P             GT + V DLF+ +P R    +S   E   I DV
Sbjct: 150 RAHYSDGKLVPAKPGQSAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDV 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    V+F+      +   ++      N  +RI Q+ G    N  VE   +  + 
Sbjct: 210 VGRYAVHCSGVAFSCRKHGDSGVSIST-PAAANTTDRIRQIHGSAVANELVEFKIEDEKL 268

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G      ++        +FIN R+V+   +   I   YA  +P G +P V + LE
Sbjct: 269 GFRSSGLVTNANYH-VKKTVILLFINHRSVESTAVKRAIEQTYASFLPKGGHPFVYIDLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I+P++VDVNVHP K  + F N   I   I   I+  + +   S
Sbjct: 328 IEPQRVDVNVHPTKREVNFLNEDEIIECICNEIRSKLAQVDSS 370


>gi|321259603|ref|XP_003194522.1| MUTL-like protein 1 [Cryptococcus gattii WM276]
 gi|317460993|gb|ADV22735.1| MUTL-like protein 1, putative [Cryptococcus gattii WM276]
          Length = 765

 Score =  309 bits (791), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 121/421 (28%), Positives = 200/421 (47%), Gaps = 19/421 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IRKL++ +INQIAA EII RPS AIKEL+ENSLDA S+ ++  +  GG    QITDNG 
Sbjct: 24  PIRKLTKDVINQIAAAEIIHRPSNAIKELLENSLDAGSTSIKISVKDGGLKLLQITDNGH 83

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R+ TSK+   +D  ++ T+GFRGEAL SI   SH+ ++++      G 
Sbjct: 84  GINKDDLPLLCERYATSKLQKFEDLQSLGTYGFRGEALASISYCSHVEVVTKTKHEGCGW 143

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +       +           +P A N GT++   DLF+ +P R    KS   E N I DV
Sbjct: 144 KAHYQDGSLIPAKPGGTADPKPAAANDGTVITAADLFYNMPLRKRAFKSTSDEYNRIIDV 203

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + + A+  P V++      +    +  Q    +    I+ +      N  +E+     + 
Sbjct: 204 VTKYAVHNPHVAWVCKKAGTALPDVATQVG-SSTKANIAALYTSALANELLEIPNTELQP 262

Query: 231 ----ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
                 L G+      +      + +FIN R V    +   I   Y   +P G  P V L
Sbjct: 263 ARLGAKLTGWVSNANSSWSKKGGWLLFINNRLVDSNKLKKAIEGHYTSYLPKGASPWVYL 322

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            L+IDP ++DVNVHP KS +RF N   I + +IQ++Q A+    +S S  +   +  +  
Sbjct: 323 SLQIDPAKIDVNVHPTKSEVRFLNEDEIVDAVIQAVQTALEGANLSRSFTVQTLLPGAPT 382

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND---PVEESEATH 403
                ++      ++  + ++     + R+  ++       T  + +     VE+ E+  
Sbjct: 383 PLGKRESSNSVITSASFSARKAAPNYKVRMDPSNRTLDSMFTVIDPSQLSGFVEDEESQE 442

Query: 404 Y 404
            
Sbjct: 443 Q 443


>gi|284166477|ref|YP_003404756.1| DNA mismatch repair protein MutL [Haloterrigena turkmenica DSM
           5511]
 gi|284016132|gb|ADB62083.1| DNA mismatch repair protein MutL [Haloterrigena turkmenica DSM
           5511]
          Length = 738

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 192/383 (50%), Gaps = 18/383 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E  + +IAAGE++ERP+ A+KEL+ENSLDA +  V+  +  GG    ++ D+G G
Sbjct: 11  IRQLDEDTVARIAAGEVVERPASAVKELVENSLDANADSVDVTVEAGGTELIRVADDGRG 70

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNT-- 117
           M   ++  AV+ H TSKI   +D  + + T GFRGEAL +IG+VS +T+ SRP   +   
Sbjct: 71  MGEADVRAAVREHTTSKIEGLEDLESGVATLGFRGEALHTIGSVSRVTIESRPRDGDESG 130

Query: 118 --GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
             G ++   G +++ V P     GTIVE+ DLF+  PAR  FLK+   E   +  V+ R 
Sbjct: 131 GAGTKLTYEGGEVTGVEPTGCPEGTIVEIEDLFYNTPARRKFLKTTATEFAHVNRVVTRY 190

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT--- 232
           A+A P V+ + +      +     +  G+    +  V G +  +  + +    +++    
Sbjct: 191 ALANPDVAVSLTHDGREVF---ATTGQGDLQAAVMAVYGREVASAMIAVEADGDDLPPGP 247

Query: 233 ---LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
              + G    P  NR +      ++NGR+V    +   I  AY   +   RYP V L LE
Sbjct: 248 LESVSGLVSHPETNRSSPEYLATYVNGRSVTADAVREGIMGAYGAQLGGDRYPFVTLFLE 307

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           +    VDVNVHP K  +RF +   +R  +  +++ A+ + G+  S     +  S+  + +
Sbjct: 308 VPGEAVDVNVHPRKREVRFDDDDSVRRQVDAAVESALLEHGLLRSRAPRGR--SAPGEAS 365

Query: 350 APKTHLPKYATSLTNTQEKLFLQ 372
                 P+  +    T E L   
Sbjct: 366 VAPGDAPRGTSDGEPTTEDLPAA 388



 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           ++  T S +    +E++           Q+   Y++ +T DGLV++DQHAA ER+ +E++
Sbjct: 519 TEQRTLSGEPATGDETDFDSLPALRVLGQLDDTYLVCETDDGLVLIDQHAADERVNYERL 578

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +Q F      +Q L  P  ++L   E      + E L RLG  A+R     +A+  +PA+
Sbjct: 579 QQAFADDP-AAQALAEPVELELTAAEAEAFEGYREALSRLGFYADRTDDRTVAVTTVPAV 637

Query: 504 LSKKNIPQLLRDIIDEIIDSS---TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
           L +   P+ LRD++   ++        T+    +  L  +ACY SI     +    +  L
Sbjct: 638 LEETIAPERLRDVLASFVEGDREAGAETVDALADEFLGDLACYPSITGNTSLTEGSVVDL 697

Query: 561 LREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           L  ++   N   C HGRP  ++    +IE  F R
Sbjct: 698 LEALDDCENPYACPHGRPVIVRFDEREIEDRFER 731


>gi|225684413|gb|EEH22697.1| DNA mismatch repair protein mutL [Paracoccidioides brasiliensis
           Pb03]
          Length = 819

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 116/394 (29%), Positives = 189/394 (47%), Gaps = 14/394 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ +E ++  GG    QITDNG 
Sbjct: 32  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSIDAGATSIEILVKDGGLKLLQITDNGH 91

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 92  GIECDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAW 151

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P A   GT + V DLF+ IP R    +S   E   I DV
Sbjct: 152 KAHYSDGKLVPAKPGQSAEPKPTAGRGGTQITVEDLFYNIPTRRRAFRSSSEEYAKILDV 211

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-- 229
           + R A+    V+ +      +   ++  + +    +RI Q+ G    +  V  N +    
Sbjct: 212 VCRYAVHCSGVAVSCKKHGDSGVSISTSTNSTTV-DRIRQIHGSAVASELVTFNVEDPGL 270

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G+     ++        +FIN R+V+   +   I   Y+  +P G +P   L LE
Sbjct: 271 GFRASGWVSNANYH-AKRTTILLFINHRSVESSAVRRAIEQTYSNFLPKGGHPFTYLDLE 329

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVNVHP K  + F N   I + I  +IQ+ +     S + ++   +     Q  
Sbjct: 330 IEPQRVDVNVHPTKREVNFLNEDEIFSSICTAIQQQLATVDSSRTFMVQTLLPVGRSQST 389

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
              + +     +  N        EN L   D+  
Sbjct: 390 VEGSSMNDKPPTSRNLSGTKRPYENNLVRTDVTM 423


>gi|221121882|ref|XP_002156705.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 697

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 13/336 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KL E ++N+IAAGE+I+RPS AIKE+IEN LDA+S  ++  +  GG  F QI D+G 
Sbjct: 5   KIIKLDEVVVNRIAAGEVIQRPSNAIKEMIENCLDAKSKSIQVTLKNGGLKFIQILDDGC 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+S  DD  +I+T+GFRGEAL SI  V+HLT+ SR   +    
Sbjct: 65  GIRKEDMGIVCERFTTSKLSSFDDLKSINTYGFRGEALASISHVAHLTITSRTADSPCAY 124

Query: 120 QIAISGEKISSVR-------PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
           +      KI + +       P A N GT + V DLF+ +  R   LK+   E N I D+I
Sbjct: 125 KAVYEDGKIVAQQGGDAVARPCAGNKGTQIVVEDLFYNVDVRRKALKNPSEEYNKIADII 184

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SNE 230
            + AI  P VSFT      N   +  Q+      + I  + G       + +  +     
Sbjct: 185 SKYAIHNPSVSFTLKKFGENTAGIRTQADM-QVIDNIKNIYGPTIARELLPVTLESVYYG 243

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             + G+     ++        +FIN R V+   +   I   Y   +P  ++P + + LE+
Sbjct: 244 FKMNGFISNANYSMKKCIFL-LFINHRLVECNSLKKAIEAVYQNYLPKEKHPFLYMSLEL 302

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           +P  +DVNVHP K  ++F +   I   + + I+  +
Sbjct: 303 NPANIDVNVHPTKHEVKFLHEEAIIEEVQKCIETEL 338


>gi|321475167|gb|EFX86130.1| putative MLH1, MutL protein 1 [Daphnia pulex]
          Length = 714

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 140/583 (24%), Positives = 241/583 (41%), Gaps = 46/583 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL E ++N+IAAGEII+RP+ A+KE++ENSLDA S+ ++  +  GG    +I DNG G
Sbjct: 11  ILKLDETVVNRIAAGEIIQRPANALKEMLENSLDAGSTSIQVTVKDGGLKLLKIQDNGSG 70

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+  +  +R  TSK+   +D + I TFGFRGEAL SI  V+HLT++++  +     +
Sbjct: 71  INKEDFAIVCERFTTSKLQKFEDLNAIGTFGFRGEALASISHVAHLTIITKTVEMQCAYK 130

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +    K + + +P A   GT + V DLF+ +P R N LKS   E N I +VI R A+  
Sbjct: 131 SSYHNGKLVGASKPCAGTQGTQIVVEDLFYNVPTRRNALKSPSDEHNRIIEVITRFAVHN 190

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ--GYT 237
             V F+   +  N   +   S N    + I  + G     + ++LN +   + ++  G  
Sbjct: 191 ASVGFSLKKLNDNGSDVRT-SPNSTQEDNIRILYGHAVAKDLIKLNVEDPVLKVKVNGLI 249

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               +         +FIN R V    +   + + YA  +  G++P V L +EI P  VDV
Sbjct: 250 SNVDYAGAKFTML-LFINHRLVDSTPLKRALDSVYATYLAKGKHPFVYLSIEIAPNCVDV 308

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAIN----------KKGISTSSVLSKKMISSFHQ 347
           NVHP K  + F N   I + I  +    +           +  I  S+ L+K      + 
Sbjct: 309 NVHPTKHEVHFLNEDAIIHKIQSTADILLKNASTSRSFAIQTVIPPSNFLNKPESRVTNS 368

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
           +           T   + +   FL ++  ++  ++ S D +   +   VE S      + 
Sbjct: 369 NATKVYDKQLVRTDSKDQKIDKFLDKSTTASESMMSSLDQSSFINQTSVEASYEPSISVN 428

Query: 408 IACAQIHQ---------NYIISQTTDGLVIVDQHAAHERLIFE-----KMRQDFNSTKIT 453
                                 +    +         ER  FE     ++R+   +    
Sbjct: 429 QRIEAERSEVPDKVRTIPREPEKNNSTISHGVTENITERRNFELTSLSQLREAVKNNTDQ 488

Query: 454 SQTLLTPEIIDL-LEGECALIMEHDEDLHRLGIK-----------AERFGPNAIAIREIP 501
                  + I +    E   +++H   L+   ++            E FG   +     P
Sbjct: 489 VLRDTFKDSIFVGCVSEKHCLIQHGTRLYIFCLERVAEEFFYQRFLEEFGNCGVICLSDP 548

Query: 502 AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
             L    +  + ++  +   +      L  ++  +L    C  
Sbjct: 549 PPLYNLALMAMDQEDNEWRPEDGPKDYLGKQVAELLG---CKS 588


>gi|183582329|dbj|BAG28292.1| mismatch repair protein [Mesocricetus auratus]
          Length = 758

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D + I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLARISTYGFRGEALASISHVAHVTITTKTDDGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTQITVEDLFYNIMTRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVADIRTLP-NATTVDNIRSIFGSAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHDESILERVQQHIEGKL 334


>gi|55379204|ref|YP_137054.1| DNA mismatch repair protein mutL [Haloarcula marismortui ATCC
           43049]
 gi|55231929|gb|AAV47348.1| DNA mismatch repair protein mutL [Haloarcula marismortui ATCC
           43049]
          Length = 746

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 185/362 (51%), Gaps = 22/362 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I++L ++ + +IAAGE++ERP+  +KEL+EN++DA++SRV+ V+  GG    ++TD+
Sbjct: 30  MTDIQRLDDQTVERIAAGEVVERPASVVKELVENAIDADASRVDVVVEAGGTDGIRVTDD 89

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G GM  E +  AV+ H TSKI D  D    + T GFRGEAL +IGAVS LT+ +RP   +
Sbjct: 90  GIGMDREAVKTAVEEHTTSKIRDIADLEGGVGTLGFRGEALHAIGAVSRLTIRTRPRGGD 149

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G ++ + G  ++SV P     GT + V DLF+ +PAR  +LK E  E   +  V+   A
Sbjct: 150 VGTELVLEGGDVTSVSPAGCPEGTTMAVEDLFYNVPARRKYLKQESTEFAHVNTVVASYA 209

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-------------- 222
           +A P V+ + +      +     +  G+  E +  V G +   + +              
Sbjct: 210 LANPDVAVSLTHGDRETF---STTGQGDLRETVMSVYGREVAESMISVGAGSEATGSGDE 266

Query: 223 -ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
            +         + G    P  NR        ++NGR V+   +   +  AY   I   RY
Sbjct: 267 MDSFPDGPLDGVHGLVSHPETNRAGREYLSTYVNGRYVRAGTVRDAVIDAYGTQIAPDRY 326

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           P  VL L++    VDVNVHP K  +RF +   +R  +  +++ A+ ++G+  S+    + 
Sbjct: 327 PFAVLFLDVPAGDVDVNVHPRKMEVRFADDEGVREQVRTAVEDALLREGLLRSTAPRGRS 386

Query: 342 IS 343
             
Sbjct: 387 AP 388



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 110/273 (40%), Gaps = 4/273 (1%)

Query: 324 KAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
            +I       SS   +   +S                S +         +      +   
Sbjct: 466 PSIQSADTKPSSETGRTDGTSGESGTGQTGGSVSGGDSDSERPGASATGQTAAERGERKF 525

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +     +   D   E+            Q+   Y++++T DGLV+VDQHAA ER+ +E++
Sbjct: 526 TGGQEQARLGDD-PEATHESLPSMRILGQLADTYVVAETDDGLVLVDQHAADERVNYERL 584

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           +  F   + T+Q L  P  + L   E  +     + L  LG    R G  ++ +R +P +
Sbjct: 585 KAKF-EGETTTQALANPVELGLTAREAEVFDRRSDALASLGFHTARTGERSVEVRTLPGV 643

Query: 504 LSKKNIPQLLRDIIDEII--DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           ++    P ++RD++   +  D     T++   + +L  +ACY S+     +    +  LL
Sbjct: 644 IADAAGPDIVRDVLGAFVAGDDEAAATVEAAADELLGDLACYPSVTGNTSLTEGSVRELL 703

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             ++   N   C HGRPT I +   ++E  F R
Sbjct: 704 AALDDCENPYACPHGRPTVIHIDRQELEDRFER 736


>gi|62897179|dbj|BAD96530.1| MutL protein homolog 1 variant [Homo sapiens]
          Length = 756

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 168/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+  + ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSTQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R ++  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +          + I  + G       +E+  +       + GY 
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|168021022|ref|XP_001763041.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685853|gb|EDQ72246.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 721

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 103/339 (30%), Positives = 170/339 (50%), Gaps = 10/339 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L E ++N+IAAGE+I+RP+ A+KEL+ENSLDA ++ +   I  GG    QI DNG 
Sbjct: 12  PIKRLEEAVVNRIAAGEVIQRPASALKELLENSLDAGATSIGITIKDGGLKLIQIVDNGH 71

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK+   +D   I T GFRGEAL SI  V+HL++++       G 
Sbjct: 72  GIRYEDLPLLCERHATSKLQVFEDLEVISTLGFRGEALASITFVAHLSVITMTEGQAHGY 131

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +      ++    RP A   GT + V +LF+ + AR    K+   E   I DV+ R AI 
Sbjct: 132 KATYKDGQMQAEARPCAAVKGTQITVENLFYNVAARRKAFKNPNEEYGRILDVVSRYAIH 191

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNEKSNEITL 233
              +SF+      +R  ++    + +  + I  V G       +     + + + +   +
Sbjct: 192 KIGISFSCKKHGDSRADVHTV-GSSSRTDTIRAVYGPGVARELIAISASDDSPQGSTFQM 250

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G      ++    +   +FIN R V+   +   I   YA  +P    P + + + + P 
Sbjct: 251 DGLISSANYS-SKRSSMVLFINDRLVECTALRKAIELVYATILPKASKPFIYMSIHLPPE 309

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
            VDVNVHP K  + F N   + + I Q+++  + +   S
Sbjct: 310 HVDVNVHPTKREVSFLNQESLVDTIQQAVEAKLLESNNS 348


>gi|302799816|ref|XP_002981666.1| hypothetical protein SELMODRAFT_421150 [Selaginella moellendorffii]
 gi|300150498|gb|EFJ17148.1| hypothetical protein SELMODRAFT_421150 [Selaginella moellendorffii]
          Length = 735

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 178/370 (48%), Gaps = 9/370 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL E ++N+IAAGE+I+RP+ A+KEL+ENSLDA ++ V  ++  GG    QITDNG 
Sbjct: 8   RIRKLEESVVNRIAAGEVIQRPASALKELLENSLDAGATVVSVIVKDGGLKLIQITDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSKI+  +D   + T GFRGEAL S+  V+HLT+ +       G 
Sbjct: 68  GIRYEDLPILCERHTTSKITAFEDLQRVSTLGFRGEALASMTFVAHLTVTTMTEGQTHGY 127

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     G      RP A   GT + V +LF+ + AR    K+   E   + DVI + +I 
Sbjct: 128 RASYKDGAMEGDPRPCAAVKGTQIMVENLFYNVTARRKSFKNPSDEYARVVDVISKYSIQ 187

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----ITLQ 234
            PKV F+       R  +     N +  E I  V G       +E+    N+      + 
Sbjct: 188 NPKVGFSCKKFGDARADVQT-PGNTSALEAIRAVYGPGTSRELIEIKTSKNDSSDSFEMN 246

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY     ++        +FIN R V    +   I   YA  +P    P + + + +    
Sbjct: 247 GYISSANYS-AKRTTMILFINDRLVDCAPLKRAIEVVYAAVLPKASKPYIYMSIRLPSEH 305

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP K  + F N   +   I  ++++ + +   S +      + ++F     P++ 
Sbjct: 306 VDVNVHPTKKEVSFLNQESLIEAIQTAVEQELLQSNKSRTFYAQTSLEAAFLPQGQPRSQ 365

Query: 355 LPKYATSLTN 364
               ++    
Sbjct: 366 AENKSSQKAP 375


>gi|170097253|ref|XP_001879846.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645249|gb|EDR09497.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 690

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 146/565 (25%), Positives = 249/565 (44%), Gaps = 42/565 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L E +IN+IAAGEII RP+ A+KEL+ENSLDA ++ +  ++  GG    QI DNG 
Sbjct: 10  PIRRLQESLINRIAAGEIIHRPASALKELLENSLDAGATSIRVIVKDGGMKLLQIQDNGC 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+S   D S I T+GFRGEAL SI  V+HL+++++   +    
Sbjct: 70  GIRKSDLPILAERFTTSKLSTFSDLSRIATYGFRGEALASISHVAHLSVITKTKSDTCAW 129

Query: 120 QIAI--------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +              +    +P A N GTI+ V+DLF+    RL+ ++S   E   I DV
Sbjct: 130 KAYYLDGSLVEPKPGQTPDPKPCAGNDGTIINVQDLFYNTLTRLSSIRSTSEEYARILDV 189

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV---ELNEKS 228
           + + ++  PK++F      S    ++   ++      I  + G       +   E N++S
Sbjct: 190 LTKYSVHNPKIAFLCKKAGSAAPDLST-PSDSEISHAIRLLYGHSIAKELINVKEDNDES 248

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
              + + Y     +         +FIN R V+   +  ++   Y   +P G  P V L L
Sbjct: 249 ESWSAESYFTNTNYQAKKMVFL-LFINHRLVESPRMKRSLEAVYHTILPKGASPFVYLSL 307

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
            IDPR VDVNVHP K  + F N   I   +  +IQ+A+  +G S +       +S     
Sbjct: 308 NIDPRAVDVNVHPTKREVHFLNEDAIIERVSDAIQQALAAQGKSRAFEYQVTSLSFSCVP 367

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
              K        +    +++ + Q    ++      D      +   +E+S A       
Sbjct: 368 KNSKRMSADLFVAGIVIKKRTYSQHKVRTSLQDRTLDSMFPVVNPAQLEKSSA---NPSD 424

Query: 409 ACAQIHQNYIISQTTDGLVIV-DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
             +   ++  I ++   L  V D   A  +    ++ +            L   +  +  
Sbjct: 425 TQSPTPKSRDIKESECFLTSVQDLRKALVKGKHRQLTEILEKHTFVGIADLQRCLSLIQY 484

Query: 468 GECALIMEHD----EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                ++ H     E  ++LG++  +FG  +           K   P +LRD+I+  +++
Sbjct: 485 STKLYLINHAALADELFYQLGVR--QFGDFSRL---------KLEPPPILRDMIEIAVNA 533

Query: 524 STTYT--------LQDRIENILATM 540
             +          + DRIE+IL T 
Sbjct: 534 ENSTEDSPLSKTQIIDRIEDILMTR 558


>gi|301607766|ref|XP_002933455.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein Mlh1
           [Xenopus (Silurana) tropicalis]
          Length = 746

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 172/329 (52%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++  +  GG    QI DNG G
Sbjct: 5   IRRLEETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVTVKDGGMKLIQIQDNGTG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D SNI T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 65  IRKEDLDIVCERFTTSKLQSFEDLSNISTYGFRGEALASISHVAHVTITTKTADGKCAYR 124

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +  K+    +P A N GT + V DLF+ I  R   LKS   E   I +V+ R AI  
Sbjct: 125 ASYADGKLKTPPKPCAGNQGTQISVEDLFYNISTRRKALKSPSEEHARIVEVVSRYAIHN 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +   S N    + I  V G       +E+  +  +    ++GY 
Sbjct: 185 SGISFSVKKQGETMADVRTLS-NATTVDNIRTVFGNAVSRELIEVGCEEEKLAFKMKGYV 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDV
Sbjct: 244 TNANYSMKKCIFL-LFINARLVESTALKKAIETVYAAYLPKNTHPFLYLSLEIAPQNVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 303 NVHPTKHEVHFLHEDSIIERVQQHIESKL 331


>gi|171690550|ref|XP_001910200.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945223|emb|CAP71334.1| unnamed protein product [Podospora anserina S mat+]
          Length = 747

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 183/396 (46%), Gaps = 16/396 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L E +IN+IAAGEII  P  A+KEL+ENS+DA S+ V+  +  GG    QITDNG 
Sbjct: 32  RIKPLDEDVINKIAAGEIIVAPVNALKELMENSVDAGSTTVDVSVKEGGLKLLQITDNGS 91

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  QR  TSK+   +D   I T+GFRGEAL SI  ++HLT+ ++   +    
Sbjct: 92  GIEKEDLPILCQRFTTSKLQKFEDLQTIATYGFRGEALASISHIAHLTVTTKTRDSECAW 151

Query: 120 QIAI--------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +              +    +PV+   GT + V DLFF +P R    +S   E N I D+
Sbjct: 152 RGHYGSGVLVPAKPGQSPDPKPVSGRQGTQITVEDLFFNVPTRRRAFRSPANEYNKILDM 211

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSN 229
           + R AI    V FT      +   ++   T     +RI Q+ G    N     E  +   
Sbjct: 212 VGRYAIHCTGVGFTCKKHGESSKGISVSPTAPCL-DRIRQIYGASVANELTEFETKDDQW 270

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               +G      + R       +FIN R V+   I   +   YA  +P   +P V L LE
Sbjct: 271 GFKAKGLATNANY-RTKKTTLLLFINNRCVESTNIRKALEQTYASFLPKNGHPFVYLSLE 329

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           IDPR+VDVNVHP K  + F N       + + ++  + +     S     + +       
Sbjct: 330 IDPRRVDVNVHPTKQEVNFLNEDETIQAVCEHLRSKLAEVD--ASRTFLTQTLLPASSRA 387

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           A  T LP   ++ +        +    S   L+ +D
Sbjct: 388 ASSTQLPPAPSAPSMATPASSRRAPPRSDTSLVRTD 423


>gi|241954070|ref|XP_002419756.1| DNA mismatch repair protein, putative [Candida dubliniensis CD36]
 gi|223643097|emb|CAX41971.1| DNA mismatch repair protein, putative [Candida dubliniensis CD36]
          Length = 713

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/422 (29%), Positives = 204/422 (48%), Gaps = 22/422 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L E +IN+IAAGEII +P+ A+KE++ENS+DA+++ +E ++  GG    QITDNG 
Sbjct: 7   TIKRLDESVINKIAAGEIIIQPANALKEMLENSIDAKATMIEILVKDGGLKLLQITDNGH 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++  ++P+  +R  TSK+S  +D  +I T+GFRGEAL SI  +S L+++++ P +    
Sbjct: 67  GISKVDLPLLCERFATSKLSKFEDLESIATYGFRGEALASISHISRLSVITKQPDSKVAY 126

Query: 120 QIAISGEKIS-----------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +      ++              +P+A   GT + V DLF+ IP+RL  LKS+  E   I
Sbjct: 127 KAYYMNGQLCSSNFKPSNTNVEPKPIAGKDGTQIIVEDLFYNIPSRLRGLKSKSDEFAKI 186

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE----L 224
            D++ R AI    V F+         ++N + +     ERI  V G    N  +E     
Sbjct: 187 LDIVGRYAIHCETVGFSCKKYGDPLQQVNTRPSMP-IKERIRVVYGSGIANELLEIDGIS 245

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
           N +   + + G      +N     Q   FIN R V  + +   I   ++  +P G +   
Sbjct: 246 NGELGLVKVSGVMTNANYNNKKKIQPIFFINHRLVTCEPLKRAINAVFSYFLPKGSHSFY 305

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKK 340
            L LEI P  +DVNVHP K  +RF N   I + I+  I   ++    S    T S+++K+
Sbjct: 306 YLSLEIKPENLDVNVHPTKREVRFLNEDEIIDIIVSEIHTKLSSVDTSRKFKTQSIITKR 365

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
             S+   +        + +      + K+   +   S         P+ +  +   +E E
Sbjct: 366 RNSNEELEEHSLPKASQPSLKKYRQENKMVRVDASQSKLSSFMQSQPSSNYHDVMKKEFE 425

Query: 401 AT 402
             
Sbjct: 426 YY 427


>gi|148229904|ref|NP_001090545.1| mutL homolog 1, colon cancer, nonpolyposis type 2 [Xenopus laevis]
 gi|117167959|gb|AAI24967.1| LOC100036779 protein [Xenopus laevis]
          Length = 750

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 8/376 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++  +  GG    QI DNG G
Sbjct: 5   IRRLEETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVTVKDGGMKLIQIQDNGTG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D SNI T+GFRGEAL S+  V+H+T+ ++        +
Sbjct: 65  IRKEDLDIVCERFTTSKLQSFEDLSNISTYGFRGEALASVSHVAHVTITTKTADGKCAYR 124

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +  K+    +P A N GT + V DLF+ +  R   LKS   E   I +V+ R AI  
Sbjct: 125 ASYADGKLKAPPKPCAGNQGTQISVEDLFYNVSTRRKALKSPSEEHARIVEVVSRYAIHN 184

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             + F+          +   S N    + I  V G       + +  + ++    ++GY 
Sbjct: 185 SGIGFSVKKQGETMADVRTLS-NATTVDNIRTVFGNAVSRELIGVGCEEDKLAFKMKGYV 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I T YA  +P   +P + L L+I P+ VDV
Sbjct: 244 TNANYSMKKCIFL-LFINARLVESTALKKAIETVYAAYLPKNTHPFLYLSLDIAPQNVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   + Q I+  +     S        +       +     LP 
Sbjct: 303 NVHPTKHEVHFLHEDSIIERVQQHIESKLLGSNSSRMYFTQTLLPGHSVCASGFTKPLPA 362

Query: 358 YATSLTNTQEKLFLQE 373
            +TS  ++ EK++  +
Sbjct: 363 SSTSQKSS-EKVYAHQ 377


>gi|260828245|ref|XP_002609074.1| hypothetical protein BRAFLDRAFT_91042 [Branchiostoma floridae]
 gi|229294428|gb|EEN65084.1| hypothetical protein BRAFLDRAFT_91042 [Branchiostoma floridae]
          Length = 717

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 179/336 (53%), Gaps = 7/336 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L E ++N+IAAGE+I RP+ A+KE++EN LDA+SS ++ V+  GG    QI DNG 
Sbjct: 4   TIRRLEETVVNRIAAGEVIVRPANAVKEMLENCLDAKSSSIQVVVKSGGLKLLQIQDNGT 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+++R   +    
Sbjct: 64  GIRRDDMGIVCERFTTSKLQKFEDLTSIATYGFRGEALASISHVAHVTIVTRTADSKCAY 123

Query: 120 QIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + S  K +++ +P A N GT + V DLF+ +P+R   ++S   E   + +V+ R AI 
Sbjct: 124 KASYSDGKPLATPKPCAGNQGTQITVEDLFYNVPSRRKAMRSPGEEHAKVAEVMSRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGY 236
              V FT      +  ++    T+    + I  V G       +E+    +    +++G+
Sbjct: 184 NAGVGFTLKKQGESMAELRTSPTSSTI-DNIRTVYGPAVARELIEVKCDDSRLAFSMKGH 242

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                ++        +FIN R V    +   +   Y+  +P   +P V + +EI P  VD
Sbjct: 243 ISNANYSTKKFIFL-LFINHRLVDSTALRKALEAVYSAYLPKNMHPFVYMSVEIMPSHVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           VNVHP K  + F +  +I   I + ++ ++     S
Sbjct: 302 VNVHPTKHEVHFLHEDVIIEAIQKQVETSLLGCNSS 337


>gi|156380669|ref|XP_001631890.1| predicted protein [Nematostella vectensis]
 gi|156218938|gb|EDO39827.1| predicted protein [Nematostella vectensis]
          Length = 742

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 176/343 (51%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IRKL E ++N+IAAGE+I+RP+ A+KE+IEN LDA+S+ +   +  GG    QI DNG 
Sbjct: 6   SIRKLDETVVNRIAAGEVIQRPANALKEMIENCLDAKSTSITVTVKSGGLKLLQIQDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+S  +D S+I T+GFRGEAL SI  V+H+T+ ++   ++   
Sbjct: 66  GIRKEDMHIVCERFTTSKLSKFEDLSSISTYGFRGEALASISHVAHVTITTKTAHSSCAY 125

Query: 120 QIAISGEKISSVR--------PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           + + S  K+   R        P A N GT + V DLF+ +  R   LKS   E + + DV
Sbjct: 126 KASYSDGKLVPPRPGLPAEPKPCAGNKGTQITVEDLFYNVATRRKALKSPGEEYSKVVDV 185

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + + +I    V+FT          +   ST  +  + I  + G       V+++  ++  
Sbjct: 186 VSKYSIHNTGVAFTLKKQGEATADVRTTST-ASLHDNIRAIYGTAVARELVDIDCDNSRL 244

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
              ++G      ++        +FIN R V    +  ++ T Y   +P G +P V + L+
Sbjct: 245 GFYMKGCITNANYSVKKLIFL-LFINHRLVDSTALRRSLETVYEAYLPKGTHPFVYMSLQ 303

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I P  VDVNVHP K  + F +   I   + + ++  +     S
Sbjct: 304 ITPSNVDVNVHPTKHEVHFLHEDAIVEAVQKCVEMKLLGCNTS 346


>gi|315052862|ref|XP_003175805.1| DNA mismatch repair protein mutL [Arthroderma gypseum CBS 118893]
 gi|311341120|gb|EFR00323.1| DNA mismatch repair protein mutL [Arthroderma gypseum CBS 118893]
          Length = 801

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 187/370 (50%), Gaps = 16/370 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE ++  GG    QITDNG 
Sbjct: 42  KIQALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEILVREGGLKLLQITDNGH 101

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+  +R  TSK+   +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   
Sbjct: 102 GIDNDDLPILCERFTTSKLQAFEDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAW 161

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P+A   GT + V DLF+ +P R    +S   E   I D+
Sbjct: 162 RAHYSDGKLVPAKPGQSASPKPIAGRKGTQITVEDLFYNVPTRRRAFRSASEEYAKILDI 221

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSN 229
           + R A+     +F+          ++  S N +  +RI Q+ G    N   ++E+++K  
Sbjct: 222 VGRYAVHCSGTAFSCKKHGEAGVSLST-SINSSIVDRIRQLHGGAVANELVSLEVDDKRW 280

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                 +     ++        +FIN R+V+   I   +   Y+  +P G +P V L LE
Sbjct: 281 GCRTSAWVTNANYH-AKKTTLLIFINHRSVESTAIKRAVEQTYSTFLPKGGHPFVYLDLE 339

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P+++DVNVHP K  + F N   I   I  +I+  +    + +S     + +    +  
Sbjct: 340 IEPQRLDVNVHPTKREVNFLNEDEIIESICSAIRTKLA--AVDSSRTFMTQTLLPGIRPP 397

Query: 350 APKTHLPKYA 359
            P       +
Sbjct: 398 EPSPSARDAS 407


>gi|322706768|gb|EFY98348.1| MutL-like protein [Metarhizium anisopliae ARSEF 23]
          Length = 722

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 136/583 (23%), Positives = 238/583 (40%), Gaps = 52/583 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KEL+EN++DA S+ +E ++  GG    QITDNG 
Sbjct: 28  RIKALDPDVVNKIAAGEIIVAPVHALKELVENAVDAGSTALEILVKDGGLKLLQITDNGC 87

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +RH TSKI+  +D S+I T+GFRGEAL SI  ++HL++ ++   +    
Sbjct: 88  GIEKEDLAILCERHTTSKITAFEDLSSIGTYGFRGEALASISHIAHLSVTTKTKDSPLAW 147

Query: 120 QIAISGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+ + +P        VA  PGT + V DLFF+IP R    +S   E N I D+
Sbjct: 148 RAHYLDGKMVAPKPGQPAEPKGVAGRPGTQITVEDLFFSIPTRRRAFRSYSDEFNKIIDM 207

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R +I    V FT      +   ++ QS      +R+ Q+ G    N  V+ +      
Sbjct: 208 VGRYSIHCQGVGFTCKKAGESSNTLSIQSQATTL-DRVRQIYGSSVANELVDFSASDARW 266

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               Q       ++        +FIN R+V+   +   I   Y   +P G +P V L LE
Sbjct: 267 GFKAQVLATNANYHIKKTTFL-LFINNRSVESANVKKAIEQTYLNFLPKGGHPFVYLSLE 325

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           IDP +VDVNVHP K  + F N   I + +   ++  +     S +      +  +     
Sbjct: 326 IDPARVDVNVHPTKREVHFLNEDEILHAVCTELESRLANVDTSRTFKTQTLLPGAKPVPE 385

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
           +     P     +T  + +      R  T     +   ++++  +  +   +   +    
Sbjct: 386 SIDEDQPSPRIMVTGKRRRNSNDLVRTDTYARKITTMFSHADGGEGSKAKTSKEEEPLAV 445

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHE------RLIFEKMRQDFNSTKITSQTLLTPEII 463
              I       + T   +   +    E        + E          +     L     
Sbjct: 446 PENIEYETNDREMTACRLKSIKELRSEVRDNIHHDLTEIFASHTFVGIVDDSRRLAAIQS 505

Query: 464 DLLEGECALIMEHDEDLHRLGI-KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
            +            E  ++LG+     FG     IR  P +         LRD++    +
Sbjct: 506 GVRLYLVDYGHTCFEYFYQLGLTDFGNFG----VIRFSPPL--------GLRDLLQMAAE 553

Query: 523 S--------STTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
           +           + ++  ++ +           + + ++  EM
Sbjct: 554 TEKKVLGAADHDFPVEKIVDKV-----------ANQLIERREM 585


>gi|307191602|gb|EFN75099.1| DNA mismatch repair protein Mlh1 [Harpegnathos saltator]
          Length = 833

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 114/409 (27%), Positives = 194/409 (47%), Gaps = 7/409 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL E ++N+IAAGE+I+RP+ A+KELIENSLDA+++ ++  +  GG    QI DNG 
Sbjct: 6   KIKKLDEVVVNRIAAGEVIQRPANALKELIENSLDAKATNIQITVKEGGLKLLQIQDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+   +D + + TFGFRGEAL SI  V+ L++ ++        
Sbjct: 66  GIRKEDMEIVCERFTTSKLQKFEDLNALTTFGFRGEALASISHVALLSITTKTADEKCAY 125

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +    K+     P A N GTI+ + +LF+ +P R   L S   E   IT+V+ R A+ 
Sbjct: 126 KASYLNSKLKAPPVPCAGNQGTIITIENLFYNVPTRRKALSSSSEEFTKITEVVMRYAVH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITLQGY 236
              V FT         ++     N      I  + G         VELN+KS +  +   
Sbjct: 186 NQAVGFTLKKHGEPSPQVRT-PHNSTKQNNIRILYGNPVARELLEVELNDKSYKFQMHAL 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P +         +FIN R V    I   +   Y   +P   +P   + L+I+P+ +D
Sbjct: 245 VTNPNYT-NKRMLMLLFINNRLVDSSSIRKMLEDLYTVYLPKKAHPWCYISLDINPQNID 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  +RF +   I   I  ++ + +     S +  L  ++  +    +  +  LP
Sbjct: 304 VNVHPTKHEVRFLHEDAIIEKIKFALDERLTGSSASRTFYLQARLPKADITKDILEEVLP 363

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
           ++     +  +K+  +E   + +     D   ++  +         ++ 
Sbjct: 364 EHKKGNPDKSKKIHAREMIRTDSSDQKLDKFNFTIHSAFKHGKSNHNFP 412


>gi|85108177|ref|XP_962522.1| hypothetical protein NCU08309 [Neurospora crassa OR74A]
 gi|28924130|gb|EAA33286.1| hypothetical protein NCU08309 [Neurospora crassa OR74A]
          Length = 751

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 114/343 (33%), Positives = 173/343 (50%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KEL+EN++DA S+ +E V+  GG    QITDNG 
Sbjct: 30  RIRPLDPDVVNKIAAGEIIVAPVHALKELMENAVDAGSTSLEIVVKDGGLKLLQITDNGC 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D  +I T+GFRGEAL SI  ++HLT+ ++  ++N   
Sbjct: 90  GIDKQDLPILCERFTTSKLQKFEDLQSISTYGFRGEALASISHIAHLTVTTKTQESNCAW 149

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +PVA   GT + V DLF+ IP R    +S   E N I D+
Sbjct: 150 RAHYGSGKLVPAKPGQSPDPKPVAGRQGTQITVEDLFYNIPTRRRAFRSTSDEYNKIIDM 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V+F+      +   +  Q+   +  +RI Q+ G    N  +E +      
Sbjct: 210 VGRYAVHCSHVAFSCKKYGESSTSIAIQANASST-DRIRQIYGGSVANELIEYSTSDDRW 268

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
               QG      ++        +FIN R V+   I   +   YA  +P   +P V L LE
Sbjct: 269 GFKAQGLATNANYS-LKKTTLLLFINHRCVESSNIRKAVEQTYASFLPKNGHPFVYLSLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I P +VDVNVHP K  + F N   I   I + I+  +     S
Sbjct: 328 IAPERVDVNVHPTKREVNFLNEHEIIQAICEHIRSKLAAVDTS 370


>gi|238859665|ref|NP_001154957.1| mutL homolog 1 [Nasonia vitripennis]
          Length = 752

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 119/405 (29%), Positives = 194/405 (47%), Gaps = 8/405 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL E ++N+IAAGEII+RP+ A+KELIENSLDA+++ ++  +  GG    QI DNG 
Sbjct: 6   KIRKLDETVVNRIAAGEIIQRPANALKELIENSLDAKATNIQVSVKEGGMKLLQIQDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   DD  +I TFGFRGEAL SI  V+HLT+ ++        
Sbjct: 66  GIRKDDLDIVCERFTTSKLQTFDDLKSISTFGFRGEALASISHVAHLTITTKTANEKCAY 125

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +    K+       A N GTI+ V +LF+ +  R   L S   E + I +V+ R A+ 
Sbjct: 126 KASYLDGKLKEPPTRCAGNQGTIITVENLFYNVATRRKALNSPSEELSKINEVVTRYAVH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL--NEKSNEITLQGY 236
            P V FT          +     +      I  + G +     +E+  ++   +  L   
Sbjct: 186 NPSVGFTLKKYGEA-ANLVRTPHSSTNINNIRLLFGNNIAKELLEVKLDDARYKFKLHAL 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                ++ G      +FIN R V    I  T+   Y+  +P   +P   + LEI+P+ VD
Sbjct: 245 VTNANYS-GKRMMLLLFINHRLVDSSAIKKTLEDIYSVYLPKKAHPWCYISLEIEPQNVD 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  +RF +   I   I  S+ + +     S +  +  K+      +   + +LP
Sbjct: 304 VNVHPTKYEVRFLHEEAIIEKIKISLDEKLASNDASRTFYIQAKLPQVNITEEVLEENLP 363

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPS-DDPTYSEDNDPVEESE 400
                    + K    ++ + T+      D   ++ + + +E  E
Sbjct: 364 GTQEQADKDKTKKVHPKDMIRTSSSDQKLDKFNFTINKNDLENPE 408


>gi|302894255|ref|XP_003046008.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726935|gb|EEU40295.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 702

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 135/534 (25%), Positives = 221/534 (41%), Gaps = 30/534 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M  + L   ++N+IAAGEII  P  A+KELIEN++DA ++ ++ +   GG    QITDNG
Sbjct: 6   MGAQALDPNVVNKIAAGEIIVAPVHALKELIENAVDAGATSLDVMAKDGGLKLLQITDNG 65

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +  +RH TSKIS  +D S I T+GFRGEAL SI  ++HL++ ++   ++  
Sbjct: 66  CGIQKDDLAILCERHTTSKISTFEDLSAIETYGFRGEALASISHIAHLSVTTKTKDSDLA 125

Query: 119 AQIAISGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITD 170
            +      ++++ +P        VA  PGT + V DLF+ +P R    +S   E N I D
Sbjct: 126 WRAHYLDGRLTAPKPGQSAEPRGVAGRPGTQITVEDLFYNVPTRRRAFRSTADEFNKIID 185

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--S 228
           ++ R A+    V FT          ++ Q+ +    +RI Q+ G    N  +        
Sbjct: 186 MVGRYAVHCKGVGFTCKKAGEASTSLSVQA-HATVIDRIRQIHGSSVANELLAFATSEDR 244

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
                +GYT    ++        +FIN R V+   I   +   Y+  +P   +P + L L
Sbjct: 245 WGFKAEGYTTNANYS-VKKTTLLLFINHRCVESTHIKKAVEQTYSNFLPKNGHPFIYLSL 303

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFH 346
           EIDP +VDVNVHP K  + F N   I   I + I+  +     S +  +           
Sbjct: 304 EIDPARVDVNVHPTKKEVHFLNEDEIIQAICEHIESKLAAVDTSRTFMTQTLLPGAKPVE 363

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
                    P   T  T    +      R  T +   +     +  ++    ++      
Sbjct: 364 STQTESDGTPSRRTPATKRVRRNSNDLVRTDTAERKITSMFVRAGPSESTASNDHAGDAS 423

Query: 407 GIACAQIHQNYIISQTTDGLVIV-----DQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
               A  ++          L  +     D        + E          +  Q  L   
Sbjct: 424 AAPEALEYETVDRETVQCRLNSIKQLRHDVREDMHNELTEIFSSHTFVGIVDDQRRLAAI 483

Query: 462 IIDLLEGECALIMEHDEDLHRLGI-KAERFGPNAIAIREIPAILSKKNIPQLLR 514
             D+            E  ++LG+     FG     IR  PA+    ++ +LLR
Sbjct: 484 QGDVKLYLIDYGRTCFEYFYQLGLTDFGNFG----TIRFGPAL----DLRELLR 529


>gi|212703793|ref|ZP_03311921.1| hypothetical protein DESPIG_01841 [Desulfovibrio piger ATCC 29098]
 gi|212672761|gb|EEB33244.1| hypothetical protein DESPIG_01841 [Desulfovibrio piger ATCC 29098]
          Length = 711

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 124/395 (31%), Positives = 212/395 (53%), Gaps = 12/395 (3%)

Query: 12  NQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  +  GG+S  ++ D+G G+   E+ +A
Sbjct: 3   NQIAAGEVVERPASVVKELVENSLDAGATRVDVFLENGGQSCIRVQDDGAGIAPGELELA 62

Query: 72  VQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA---QIAISGE 126
           V RH TSKI+  DD  +I ++GFRGEALPSI +V+  ++ S     + G    +I +   
Sbjct: 63  VTRHATSKIASMDDLEHIASYGFRGEALPSIASVARFSMESAVTGADGGTEASRIVVEFG 122

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           ++ +V P A++ GTIVEVRDLF  IPARL FLK+   E     D + R+A+A   V FT 
Sbjct: 123 RLLAVEPSALHRGTIVEVRDLFTNIPARLKFLKTPATELKRAQDWLVRLALARCDVGFTL 182

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
              +    +        +  +R++Q+     +      + + + I  +G   +P+ ++  
Sbjct: 183 RAGEREALRFL---PGQSLRDRLAQLWPRLVVEALRPFDAERHGIRARGLAALPSVSQQR 239

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
            ++  +++NGR+V DK +L+ +R AY   I    YP VVL +++ P  VDVNVHPAKS +
Sbjct: 240 GDRILLYVNGRSVSDKRLLAAVREAYKGRITSRDYPQVVLFVDMPPDMVDVNVHPAKSEV 299

Query: 307 RFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           RFR+ + + + ++ ++Q A+     S           + +++  +        P+     
Sbjct: 300 RFRDESSVFSAVLHAVQGALVSDVESVLDAAREADDARPVAAQSRLWDDLPPRPQGFWGS 359

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            +    +  +E+    ++         ++D    E
Sbjct: 360 ADAAPLMRHEEDETREDEGQWQVRRPDADDGTCPE 394



 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 111/263 (42%), Gaps = 17/263 (6%)

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
             +    +      P+   P           +         T  L  + D     D    
Sbjct: 459 FFESARQTARTAMPPEHVAPMAGQDDAGHAAEQAHTPETDGTEVLPGAGDAACGPDTAVT 518

Query: 397 EESEATHYQ----LGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTK 451
           +ES A  ++          Q+ + Y++ +   G L+++DQHAAHER+++E++R+   +  
Sbjct: 519 DESAAGRHELVVGGLTYLGQVAETYLVLRDASGALMLLDQHAAHERVLYERLRKGAFAGT 578

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
                L  P  + L   E    +E  ++L R+G      G   +A R IP  LS+    +
Sbjct: 579 AQCLAL--PLELALQPVEEERFLEVRDNLERMGFDVSCSGGRLLA-RGIPPSLSRSEAGE 635

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
            LR+++            +D I  +  +++C G+I++G+++   E   LLR+    P   
Sbjct: 636 FLREVLA---------GRKDDIRAMFISLSCKGAIKAGQRLADDEAAALLRQWLHTPERE 686

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
            C HGRP+ ++     +EKLF R
Sbjct: 687 YCPHGRPSILRWDAVALEKLFKR 709


>gi|13591989|ref|NP_112315.1| DNA mismatch repair protein Mlh1 [Rattus norvegicus]
 gi|13878571|sp|P97679|MLH1_RAT RecName: Full=DNA mismatch repair protein Mlh1; AltName: Full=MutL
           protein homolog 1
 gi|1724118|gb|AAB38506.1| mismatch repair protein [Rattus norvegicus]
          Length = 757

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/329 (32%), Positives = 169/329 (51%), Gaps = 7/329 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+ EN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMTENCLDAKSTNIQVIVREGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D + I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLAMISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT++ V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLITVEDLFYNIITRKKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
             +SF+          +     N    + I  + G       +E+  +       + GY 
Sbjct: 188 SGISFSVKKQGETVSDVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYI 246

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V+   +   I   YA  +P   +P + L+LEI P+ VDV
Sbjct: 247 SNANYSVKKCIFL-LFINHRLVESAALKKAIEAVYAAYLPKNTHPFLYLILEISPQNVDV 305

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           NVHP K  + F +   I   + Q I+  +
Sbjct: 306 NVHPTKHEVHFLHEESILERVQQHIESKL 334


>gi|242008773|ref|XP_002425174.1| DNA mismatch repair protein MlH1, putative [Pediculus humanus
           corporis]
 gi|212508876|gb|EEB12436.1| DNA mismatch repair protein MlH1, putative [Pediculus humanus
           corporis]
          Length = 657

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 180/330 (54%), Gaps = 7/330 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+KL E +IN+IAAGE+I+RP  A+KELIENS+DA+SS+++  +  GG    QI+DNG 
Sbjct: 6   SIKKLDEAVINRIAAGEVIQRPYNALKELIENSIDAKSSKIQITVKDGGLKLLQISDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+S  +D + I T+GFRGEAL SI  V+HLT++++   N  G 
Sbjct: 66  GIRKEDLDIVCERFTTSKLSKFEDLTKISTYGFRGEALASISHVAHLTIVTKTADNQCGY 125

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +    K+ +  +P A+  GT + V +LF+ +P R N LKS   E + + DV+R+ AI 
Sbjct: 126 KASYVDSKLKNPPKPCAVEKGTQIIVEELFYNVPTRKNALKSPAEEYSKVLDVVRKYAIH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGY 236
             K++F+    K     +N    N    + I  + G       +E+ +  +  +  +QG 
Sbjct: 186 NSKIAFSLKKHKETLSDVNT-PQNSTSVDNIRLIYGASIAKELLEVKDSDDTLKFQVQGQ 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                ++        +FIN R V    + S I   Y+  +P   YP V L L I P  +D
Sbjct: 245 ITNVNYSNKKFTFL-LFINDRLVNSSSLKSIIEQVYSIYLPKNNYPFVYLSLTICPENID 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           VNVHP K  + F +   I N I    +K +
Sbjct: 304 VNVHPTKHEVHFLHEENIVNKIKAIFEKTL 333


>gi|156049801|ref|XP_001590867.1| hypothetical protein SS1G_08608 [Sclerotinia sclerotiorum 1980]
 gi|154693006|gb|EDN92744.1| hypothetical protein SS1G_08608 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 745

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/343 (33%), Positives = 176/343 (51%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 33  RIKALDPDVVNKIAAGEIIVAPVHALKELIENAVDAGSTSIEVLVKDGGLKLLQITDNGH 92

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  ++HLT+ +R   +N   
Sbjct: 93  GINKEDMAILCERFTTSKLKQFEDLTSIGTYGFRGEALASISHIAHLTVTTRTKDSNCAF 152

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      ++           +P+A   GT + V DLF+ IP R    +S   E N I DV
Sbjct: 153 RAHYDSGRLIPAKPGQGSDPKPIAGRAGTQITVEDLFYNIPTRRRAFRSASEEYNKILDV 212

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN--EKSN 229
           + R AI    ++F+          ++ Q  +    +RI Q+ G    N  +E    +   
Sbjct: 213 VGRYAIHCDGIAFSCKKHGEASTTISTQIASSTV-DRIRQIHGSGVANELIEFKSADPRW 271

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
             T QG+T    ++        +FIN R+V+   I   I   Y+  +P G +P   L LE
Sbjct: 272 GFTAQGWTTNANYH-VKKTTLLLFINHRSVESTAIRKAIEQTYSAFLPKGGHPFTYLNLE 330

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I+P+++DVNVHP K  + F N   I   I   I+  +     S
Sbjct: 331 IEPQRLDVNVHPTKREVNFLNEEEIIEKICADIRIKLADVDKS 373


>gi|327299736|ref|XP_003234561.1| DNA mismatch repair protein Mlh1 [Trichophyton rubrum CBS 118892]
 gi|326463455|gb|EGD88908.1| DNA mismatch repair protein Mlh1 [Trichophyton rubrum CBS 118892]
          Length = 816

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 182/362 (50%), Gaps = 14/362 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE ++  GG    QITDNG 
Sbjct: 58  KIQALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEILVREGGLKLLQITDNGH 117

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   
Sbjct: 118 GIDHDDLSILCERFTTSKLQAFEDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAW 177

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P+A   GT + V DLF+ +P R    +S   E   I D+
Sbjct: 178 RAHYSDGKLVPAKPGQNASPKPIAGRKGTQITVEDLFYNVPTRRRAFRSASEEYAKILDI 237

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSN 229
           + R A+     +F+          ++  S N +  +RI Q+ G    N   ++E++ K  
Sbjct: 238 VGRYAVHCSGTAFSCKKHGEAGVSLST-SINSSIVDRIRQLHGGAVANELVSLEVDGKRW 296

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                 +     ++        +FIN R V+   I   +   Y+  +P G +P V L LE
Sbjct: 297 GCHTSAWVTNANYH-AKKTALLIFINHRAVESTAIKRAVEQTYSTFLPKGGHPFVYLDLE 355

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P+++DVNVHP K  + F N   I   I  +I+  +     S + +    +      + 
Sbjct: 356 IEPQRLDVNVHPTKREVNFLNEDEIIESICTAIRTKLAAVDSSRTFMTQTLLPGIRPPEP 415

Query: 350 AP 351
           AP
Sbjct: 416 AP 417


>gi|198427900|ref|XP_002122535.1| PREDICTED: similar to mutL homolog 1, colon cancer, nonpolyposis
           type 2 [Ciona intestinalis]
          Length = 697

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/412 (28%), Positives = 189/412 (45%), Gaps = 15/412 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L E ++N+IAAGE+I+RP+ A+KE+IEN LDA S+ +   +  GG    QI+DNG G
Sbjct: 9   IKRLDETVVNRIAAGEVIQRPANAVKEMIENCLDAGSTTITVSLKSGGLKMLQISDNGHG 68

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   DD   I TFGFRGEAL SI  V+HL++ SR   +  G +
Sbjct: 69  IRREDMEIVCERFTTSKLKEFDDLKTIATFGFRGEALASISHVAHLSITSRTKDSKCGYK 128

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +    +I  S RP A N GT + V DLF+ +P R    KS   E   I DV+ R A+  
Sbjct: 129 ASYLDGRIKGSPRPTAGNTGTQITVEDLFYNVPTRRKAFKSPSEEHQKIADVMTRYALHN 188

Query: 180 PKVSFTFSTIKSN----RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ- 234
              SFT      +               +F   I  + G       +E+     ++ L+ 
Sbjct: 189 SGKSFTLRKTDGDSGPSGGVSVRTQLGSSFVTNIGTLFGSKVAKEVIEVKHYDTQLQLKT 248

Query: 235 -GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY      +        +FIN R V    +  ++ + Y   +P G +P V L LE+   
Sbjct: 249 FGYISNANCSMKKFVFL-LFINNRLVDCSVLKKSLDSVYQSYLPKGSHPFVYLSLEMPTN 307

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-----SVLSKKMISSFHQD 348
            +DVNVHP K  + F +   +   + + ++ ++     S +      +L         ++
Sbjct: 308 NLDVNVHPTKHEVHFLHEDEVVTSVQKQVEASLLSCDSSRTFYMQVKLLPTNTSKPTGEN 367

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
               T    + T       +++  +   + + L   D       N  VEE +
Sbjct: 368 TKESTKDTTHPTKDKQLPTRVYDHQLVRTDSKLQKLDSFLLKSKNKVVEEPK 419


>gi|326503044|dbj|BAJ99147.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 724

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 183/380 (48%), Gaps = 10/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E ++N+IAAGE+I+RPS A+KEL+ENS+DA SS +   +  GG    Q++D+G 
Sbjct: 15  RIRRLEESVVNRIAAGEVIQRPSSAVKELVENSIDAGSSTISVTVKDGGLKLIQVSDDGH 74

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK+S  +D   I + GFRGEAL S+  V H+T+ +       G 
Sbjct: 75  GIRCEDLPILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGY 134

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     + +  +P A   GT + V +LF+ + AR   L++   +   I D I R A+ 
Sbjct: 135 RVSYRDGVMENDPKPCAAVKGTQIMVENLFYNMVARRKTLQNSNDDYPKIVDFISRFAVH 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-----ITL 233
           +  V+F+     +NR  ++  ST+    + I  V G   + + +E+             +
Sbjct: 195 HINVNFSCRKHGANRADVHSGSTSSRL-DAIRNVYGASVVRDLMEIQVSDENAVDEIFKM 253

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G+     +         +FIN R V    +       Y+  +P    P + + + + P 
Sbjct: 254 DGFISNANYVAKKTTMI-LFINDRLVDCTSLKRATEFVYSAILPQASKPFIYMSINLPPE 312

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVN+HP K  +   N   I   I  +I+K +     +          S+  Q N  K 
Sbjct: 313 HVDVNIHPTKKEVSLLNQERIIEKIKDAIEKKLVNCNNTRIFQTQALNPSALTQANTRKD 372

Query: 354 HLPKYATSLTNTQEKLFLQE 373
              + +T      +K+ + +
Sbjct: 373 MGTEVSTPTGEKSQKIPVSQ 392


>gi|190346345|gb|EDK38404.2| hypothetical protein PGUG_02502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 678

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/416 (28%), Positives = 200/416 (48%), Gaps = 24/416 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I KL   +IN+IAAGEII +P+ A+KELIENS+DA S+ V+ ++  GG    QITDNG 
Sbjct: 8   TITKLDSSVINRIAAGEIIIQPANALKELIENSIDAGSTSVDILVKDGGIKLLQITDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK++  +D  +I T+GFRGEAL SI  ++ L+++++   ++   
Sbjct: 68  GIHKEDLQLLCERFATSKLAKFEDLESISTYGFRGEALASISHIARLSVVTKTKTSDLAY 127

Query: 120 QIAI----------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           +             +   ++  +P A   GT + V DLF+ +P+RL  LKS+  E + I 
Sbjct: 128 KAFYLGGKLVGQNFNTNAVAEPKPTAGTDGTQLTVEDLFYNMPSRLKSLKSKNDEYSKIL 187

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV------- 222
           DV+ R AI    V F+      +   ++ +       ERI  V G    N+ +       
Sbjct: 188 DVVGRYAIHCQNVGFSCKKYGESHQALSTRPHVS-LKERIRIVQGSAIANDLIDLESIKN 246

Query: 223 -ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
            +  +    ++++G      +      +  +FIN R V    +  +I  AY   +P G +
Sbjct: 247 KDHAKSVGLLSVEGAITSSDYMNKKKVEPVLFINHRLVSCGPLKRSILAAYYFFLPKGNH 306

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG---ISTSSVLS 338
           P + L LEI+PR VDVN+HP K  +RF N   I   +   +Q  ++         +  + 
Sbjct: 307 PFIYLSLEIEPRNVDVNIHPTKREVRFLNEDEIIEIVTDLVQSTLSSHDSARKIPTQTVL 366

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
            K  +   +    K         +  +Q KL       + ++   +DD   +  ++
Sbjct: 367 SKPRTQPTEPPTKKYRQENKLVRVDASQAKLSFLVPTSADSNPSKTDDSIITSSSE 422


>gi|50287749|ref|XP_446304.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525611|emb|CAG59228.1| unnamed protein product [Candida glabrata]
          Length = 723

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 189/385 (49%), Gaps = 11/385 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L   ++N+IAAGEII  P  A+KE++ENS+DA ++ +E ++  GG    Q++DNG 
Sbjct: 3   KIRALDPSVVNKIAAGEIIISPVNALKEILENSIDAGATMLEILVRDGGIKLLQVSDNGC 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+++  D  NI T+GFRGEAL SI  ++ L++ ++        
Sbjct: 63  GIQLDDLPLLCERFATSKLTNFQDLENIATYGFRGEALASISHIARLSVTTKTNDEQCAY 122

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+    +PVA   GT + V DLF+ IP+RL  LK+   E   I DV+ R  I 
Sbjct: 123 KVSYNEGKMVDKPKPVAGKNGTSIHVEDLFYNIPSRLRALKTPNEEFTRILDVVGRYGIH 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI----TLQ 234
              + F+      + Y +  +       +RI  + G +   + +     SNE      + 
Sbjct: 183 SKGIGFSCKKFGDSSYSITLKPDFTTI-DRIRSIYGNNVATSIIGFEMDSNENLGLTKVS 241

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GY      N   + Q   FIN R V    +   I   Y   +P G  P + L + I P  
Sbjct: 242 GYISTSNLNNKKSVQPIFFINDRLVTCDPLRRAIYNTYTNYLPKGTRPFIYLSINISPPS 301

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAP 351
           VDVNVHP K  +RF +   I + I  SI   ++K   + +    V+  K ++        
Sbjct: 302 VDVNVHPTKREVRFLHQDEIIDEITTSINDQLSKLDTTRTFNRGVMMSKPLTDNSSTKYS 361

Query: 352 KTHLPKYATSLTNTQEKLFLQENRL 376
           +   P     + ++Q      EN+L
Sbjct: 362 QAATPTTTHPMNSSQTSQRRYENKL 386


>gi|289619584|emb|CBI53867.1| putative MLH1 protein [Sordaria macrospora]
          Length = 752

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 116/343 (33%), Positives = 174/343 (50%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KEL+EN++DA S+ +E V+  GG    QITDNG+
Sbjct: 34  RIRALDPDVVNKIAAGEIIIAPVHALKELMENAVDAGSTSLEIVVKDGGLKLLQITDNGY 93

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D  +I T+GFRGEAL SI  V+HLT+ ++  ++N   
Sbjct: 94  GIDKQDLPILCERFTTSKLQKFEDLQSISTYGFRGEALASISHVAHLTVTTKTQESNCAW 153

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +PVA   GT + V DLF+ IP R    +S   E N I D+
Sbjct: 154 RAHYGSGKLVPAKPGQSPDPKPVAGRQGTQITVEDLFYNIPTRRRAFRSTSDEYNKIIDM 213

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V+F+      +   +  Q+T  +  +RI Q+ G    N  +E +      
Sbjct: 214 VGRYAVHCSHVAFSCKKHGESSTSITIQATASST-DRIRQIYGGSVANELIEYSTSDDRW 272

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G      +N        +FIN R V+   I   +   YA  +P   +P V L LE
Sbjct: 273 GFKAMGLATNANYN-LKKTTLLLFINHRCVESSNIRKAVEQTYASFLPKNGHPFVYLSLE 331

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I P +VDVNVHP K  + F N   I   I + I+  +     S
Sbjct: 332 IAPERVDVNVHPTKREVNFLNEHEIIQAICEHIRSKLAAVDTS 374


>gi|219963259|gb|ACL68184.1| MutL-like protein [Sordaria macrospora]
          Length = 748

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 116/343 (33%), Positives = 174/343 (50%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L   ++N+IAAGEII  P  A+KEL+EN++DA S+ +E V+  GG    QITDNG+
Sbjct: 30  RIRALDPDVVNKIAAGEIIIAPVHALKELMENAVDAGSTSLEIVVKDGGLKLLQITDNGY 89

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D  +I T+GFRGEAL SI  V+HLT+ ++  ++N   
Sbjct: 90  GIDKQDLPILCERFTTSKLQKFEDLQSISTYGFRGEALASISHVAHLTVTTKTQESNCAW 149

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +PVA   GT + V DLF+ IP R    +S   E N I D+
Sbjct: 150 RAHYGSGKLVPAKPGQSPDPKPVAGRQGTQITVEDLFYNIPTRRRAFRSTSDEYNKIIDM 209

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           + R A+    V+F+      +   +  Q+T  +  +RI Q+ G    N  +E +      
Sbjct: 210 VGRYAVHCSHVAFSCKKHGESSTSITIQATASST-DRIRQIYGGSVANELIEYSTSDDRW 268

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G      +N        +FIN R V+   I   +   YA  +P   +P V L LE
Sbjct: 269 GFKAMGLATNANYN-LKKTTLLLFINHRCVESSNIRKAVEQTYASFLPKNGHPFVYLSLE 327

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I P +VDVNVHP K  + F N   I   I + I+  +     S
Sbjct: 328 IAPERVDVNVHPTKREVNFLNEHEIIQAICEHIRSKLAAVDTS 370


>gi|3192877|gb|AAC19117.1| mutL homolog [Drosophila melanogaster]
          Length = 663

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 243/565 (43%), Gaps = 66/565 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+S+ ++  +  GG    QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 130 ATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT       +  +       +  E I  + G       +E + +      +    I
Sbjct: 190 PRVGFTLRKQGDAQPALRT-PVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECLI 248

Query: 240 PTFNRGNANQFY-VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + +++ + YA  +P G +P V + L + P+ +DVN
Sbjct: 249 TQVNYSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPPQNLDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI----------NKKGISTSSVLSKKMISSFHQD 348
           VHP K  + F     I + I Q ++  +           +  +  +  L +  ++   Q 
Sbjct: 309 VHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLRLPGAPDLDETQLADKTQR 368

Query: 349 NAPKTHLPKYATSLT------------------NTQEKLFLQENRLSTNDLLPSDDPTYS 390
             PK  +   +T                     ++QE   L E          S +   S
Sbjct: 369 IYPKEMVRTDSTEQKLDKFLAPLVKSDSGVSSSSSQEASRLPEESFRVTAAKKSREVRLS 428

Query: 391 EDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
              D  +  E                   + +   + Q    L + +  +  E L +++M
Sbjct: 429 SVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRM 488

Query: 444 RQDFNS-TKITSQTLLTPEIIDL-------------LEGECALIMEHDEDLHR------- 482
             +F + ++IT    L  + + +              E +  L     + L +       
Sbjct: 489 IYEFQNCSEITICPPLPLKELLILSLESRAAGWTPEDEDKAELADGAADILLKKAPIMRE 548

Query: 483 -LGIKAERFGPNAIAIREIPAILSK 506
             G++    G     +  +P++L +
Sbjct: 549 YFGLRISEDG----MLESLPSLLHQ 569


>gi|255953937|ref|XP_002567721.1| Pc21g06790 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589432|emb|CAP95576.1| Pc21g06790 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 764

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 140/621 (22%), Positives = 235/621 (37%), Gaps = 67/621 (10%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L   ++N+IAAGEII  P  A+KELIEN++DA S+ VE +I  GG    QITDNG G+  
Sbjct: 36  LDPDVVNKIAAGEIIVAPMHALKELIENAVDAGSTSVEVLIKEGGLKLLQITDNGHGIDR 95

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           +++P+  +R  TSK+   +D ++I T+GFRGEAL SI  ++HLT+ ++   ++   +   
Sbjct: 96  DDLPILCERFTTSKLKEFEDLTSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAWRAHY 155

Query: 124 SGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
              K+   +P         A   GT + V DLF+ +P R    +S   E   I DV+ R 
Sbjct: 156 GDGKLIPAKPGQNAAPKATAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDVVGRY 215

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL-- 233
           A+    V+F+      +   ++    + N  +RI Q+ G    N  VE   +  +     
Sbjct: 216 AVHCSGVAFSCRKHGDSGVSIST-PVSANTIDRIRQIHGSAVANELVEFKTEDMKFGFRA 274

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G      ++        +FIN R V+   +   +   Y+  +P G +P V L LEI+P 
Sbjct: 275 SGLATNANYH-VKKTVILLFINHRAVESTAVKRAVEQTYSAFLPKGGHPFVYLDLEIEPN 333

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-----TSSVLSKKMISSFHQD 348
           +VDVNVHP K  + F N   I   +   I+  + +   S      S +   + I S  +D
Sbjct: 334 RVDVNVHPTKREVNFLNEDEIIELVCTEIRSKLAEVDSSRTFLTQSLLPGVQAIESIQRD 393

Query: 349 NAPKTH-----------LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
                H            PK   +     E   ++ +               S  +    
Sbjct: 394 QGAPVHEGTAEAIKAGATPKTPATTKKPYENNLIRTDSKVRKITAMLGPAAASPRDPSNP 453

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIV--------DQHAAHERLIFEKMRQDFNS 449
           E+         +       Y  +      + +           +     + E        
Sbjct: 454 EAPTETDTPTTSILDNGLQYETTDRQPLKIALTSVKSLRASVRSEMHNTLTEMFASHTYV 513

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             +  +  L      +        +   E  +++G     FG   +          + + 
Sbjct: 514 GLVDERRRLAAIQSGVKLYLIDYGLACHEFFYQVG--LTDFGNFGVI---------RLDP 562

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM--NRLLREMEKN 567
              L D++    +S      +   E          SI +     + EM    L+   E  
Sbjct: 563 APKLVDLLKIAAESERQEHAESNGEEA-------DSIFAN----APEMIARTLIDRREML 611

Query: 568 PNSS---QCNHGRPTFIKLKL 585
                     HG  T + + L
Sbjct: 612 NEYFSMQISPHG--TLLTIPL 630


>gi|115615225|ref|XP_793318.2| PREDICTED: similar to DNA mismatch repair protein homolog
           [Strongylocentrotus purpuratus]
 gi|115932300|ref|XP_001176052.1| PREDICTED: similar to DNA mismatch repair protein homolog
           [Strongylocentrotus purpuratus]
          Length = 745

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 112/336 (33%), Positives = 178/336 (52%), Gaps = 7/336 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IRKL E ++N+IAAGE+I+RP+ A+KE+IEN LDA+S+ ++  +  GG    QI DNG 
Sbjct: 4   TIRKLDETVVNRIAAGEVIQRPANALKEMIENCLDAKSTSIQVTVKSGGMKLLQIQDNGT 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+ +  D ++I T+GFRGEAL SI  V+H+T+++R   +    
Sbjct: 64  GIRKDDMDIVCERFTTSKLREFNDLTSISTYGFRGEALASISHVAHVTIVTRTEDSKCAY 123

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +   S  K+  +++P A N GT + V DLF+ +  R   LKS   E N I++V+ R AI 
Sbjct: 124 KGNFSDGKLKAAIKPCAGNRGTQITVEDLFYNVATRRKALKSASEEHNKISEVVSRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGY 236
              V+FT      +   +   S N +  + I  V G       +E+N +++     L G 
Sbjct: 184 NAGVAFTLKKSGESTADVRT-SQNASTVDNIRSVFGPTVARELLEINHENSGLGFKLSGQ 242

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                ++      F +FIN R V    +   I   Y+  +P   +P +   LEI P  VD
Sbjct: 243 ISNANYS-VKRLIFLLFINHRLVDSSSLRKAIEAVYSTYLPKNAHPFIYFSLEIAPHNVD 301

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           VNVHP K  + F +   I   I + +++ +     S
Sbjct: 302 VNVHPTKHEVHFLHEEAIIEDIQKCLEQKLLGCNSS 337


>gi|320583166|gb|EFW97382.1| hypothetical protein HPODL_1160 [Pichia angusta DL-1]
          Length = 652

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 136/534 (25%), Positives = 238/534 (44%), Gaps = 26/534 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E ++N+IAAGEI+  P  A+KEL+ENS+DA+++ ++     GG    QITDNG 
Sbjct: 5   RIRPLEEAVVNRIAAGEIVLAPYSALKELLENSIDAQATSIDVACKEGGLKLLQITDNGV 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D  +I T+GFRGEAL SI  ++H++L+++   +    
Sbjct: 65  GIAKDDLAIVCERFTTSKLRKFEDLQHIATYGFRGEALASISHIAHVSLVTKTRDSPCAW 124

Query: 120 QIAISGEKI----SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
           +      ++       +PVA   GT + V DLF+  P+RL+ L+S   E   I D++ + 
Sbjct: 125 KCRYDAGRLDARTPEPQPVAGTDGTTLVVEDLFYNFPSRLHSLRSPAEEYAKIVDIVSKY 184

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----I 231
           AI    V FT     +    +  +S      ER+  + G    +  +EL  + +     +
Sbjct: 185 AIHATHVGFTCKKYGTAANDIALRSGMSQ-KERVRAIYGSAVASQLLELEVEPHTDYGLL 243

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
              G      ++   +     FINGR V    +   I   Y+  +P G  P V L LE+D
Sbjct: 244 KCTGLITNVNYDNKKSTPPIFFINGRLVSCDPLRRAIAQTYSTFLPKGHKPFVYLSLELD 303

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
              VDVNVHP K  +RF     I + + Q I + +    +S  + L+++++ S  +    
Sbjct: 304 SVNVDVNVHPTKREVRFLFEDEIVDHVAQKIAEVLANTDVSR-TFLTQQLLPSPKRSATT 362

Query: 352 --KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                 PK    L +  +     E++L   D       TY      V+  +        A
Sbjct: 363 DIAISTPKKLRPLPSFSQYKRPSEHKLVRTDFSQPTLTTYLSQKTSVDNVDNAASPTQRA 422

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             ++   + + +  +        AA +RL  E   +      + S   L     D+    
Sbjct: 423 KVKLKSIFELKEEVE-------QAADDRLT-EVFSKLTFIGVVDSLKRLMCFQHDVKLYI 474

Query: 470 CALIMEHDEDLHRLGI-KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                   E  +++G+     FG   + + + P  ++   +   L D +DE++ 
Sbjct: 475 ADYGALCYELFYQIGLADFSNFG--CLRLSQ-PVSIADLLLENGLTDQMDEVLQ 525


>gi|150865217|ref|XP_001384344.2| hypothetical protein PICST_89086 [Scheffersomyces stipitis CBS
           6054]
 gi|149386473|gb|ABN66315.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 736

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 124/401 (30%), Positives = 198/401 (49%), Gaps = 31/401 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++LSE +IN+IAAGEII +P  A+KE++ENS+DA +S ++ V+  GG    QI DNG
Sbjct: 1   MPIQRLSESVINRIAAGEIIIQPVNALKEMLENSIDAGASSIDIVVKDGGTKLLQIADNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+  +R  TSK+S  +D  +I T+GFRGEAL SI  ++ L+++++   +   
Sbjct: 61  HGIAKEDLPLLCERFATSKLSRFEDLESIQTYGFRGEALASISHIARLSVVTKTATSAVA 120

Query: 119 AQIAISGEKI----------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
            +   +  K+          +  +PVA   GT + V DLF+ +P RL  LKS+  E + I
Sbjct: 121 YKAFYANGKLSGQNFKSSANTEPKPVAGKVGTQITVEDLFYNLPQRLKGLKSKSDEFSRI 180

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE----- 223
            DVI R AI    V F+          ++ ++      ERI  + G     + +E     
Sbjct: 181 LDVIGRYAIHCKDVGFSCKKHGEPYQILSTRAQLP-IKERIRTIFGNSIATDILEVDLDT 239

Query: 224 --------LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                    N K   I++ G      +N         FIN R V  + +   +   Y   
Sbjct: 240 NIEKEYGTDNSKYGLISVTGAITNSNYNNKKRIPPVFFINNRLVACEPLKRAVSGVYQFF 299

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           +P G YP + L L+ID + VDVN+HP K  +RF +   I   I+  +   ++    S   
Sbjct: 300 LPKGSYPFIYLSLQIDAQNVDVNIHPTKREVRFLHEEEIIELIVDKVHLILSSVDTSR-- 357

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
               K  +        K  + +++   T +Q+K + QEN+L
Sbjct: 358 --KFKTQTILSNTGTAKRPIDEFSALSTQSQKK-YRQENKL 395


>gi|254577397|ref|XP_002494685.1| ZYRO0A07282p [Zygosaccharomyces rouxii]
 gi|238937574|emb|CAR25752.1| ZYRO0A07282p [Zygosaccharomyces rouxii]
          Length = 739

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 116/413 (28%), Positives = 202/413 (48%), Gaps = 13/413 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L E ++N+IAAGEII  P  A+KE++ENS+DA +S ++ ++  GG    QITDNG 
Sbjct: 4   KIKPLDESVVNKIAAGEIIISPVNALKEMMENSIDAGASSLDILVREGGIKLLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++P+   R  TSK++  +D   I T+GFRGEAL SI  ++ LT+ ++   +    
Sbjct: 64  GISKEDLPILCHRFTTSKLAKFEDLEKIATYGFRGEALASISHIARLTITTKTGDDRCAW 123

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ S  K+    +PVA   GT++ V +LF+ +P+RL  L+S   E + I DV+ R A  
Sbjct: 124 RVSYSDGKMIGEPKPVAGKDGTVILVENLFYNMPSRLRALRSSSEEYSKILDVVGRYACH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN----EKSNEITLQ 234
              ++F+      +++ +  ++      ERI  V G    +  ++L     E+     + 
Sbjct: 184 SEGIAFSCKKFGDSQFALTVRANLSTV-ERIRCVFGSTVSSKLLDLELGPLEEFGVQKVV 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G       +   +     FIN R V    +   +R  Y+  +P G  P + L + I+P  
Sbjct: 243 GKVSNLDLSFKKSISPVFFINNRLVTCNPLARALRQIYSTYLPKGDKPFMYLSILINPEI 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-----TSSVLSKKMISSFHQDN 349
           +DVN+HP K  +RF +   I   I   + + ++K   S     +S V  + +  +F    
Sbjct: 303 LDVNIHPTKREVRFLHEEEIIEAISSKLNEELSKIDTSRTFKTSSIVTPQPLKETFESTK 362

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            PK  + K   +    ++       +   N L+ +D       +    +S   
Sbjct: 363 GPKGSVSKAPHTPVQNKQSPLGNSIKRYENKLVRTDASQSKITSFMANQSTPP 415


>gi|196002717|ref|XP_002111226.1| hypothetical protein TRIADDRAFT_50100 [Trichoplax adhaerens]
 gi|190587177|gb|EDV27230.1| hypothetical protein TRIADDRAFT_50100 [Trichoplax adhaerens]
          Length = 733

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 194/387 (50%), Gaps = 18/387 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL EK++N+IAAGE+I+RP+ AIKE+IENSLDA+++ ++  +  GG    QI DNG 
Sbjct: 4   KIQKLDEKVVNRIAAGEVIQRPANAIKEMIENSLDAKATLIQVTVKSGGLKLIQIQDNGH 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+S  +D S++ T+GFRGEAL SI  V+H+ +++R   +    
Sbjct: 64  GIKKEDLDIVCERFTTSKLSRFEDLSSMVTYGFRGEALASISHVAHVAIVTRTEDSKCAY 123

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +  K+           +P A N GT + V DLFF  P RL  LK+   E N IT+V
Sbjct: 124 RATYADGKMVPGQPNASADPKPCAGNVGTQINVEDLFFNTPLRLKALKNPNEEFNKITEV 183

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           I R A+    V F       +   +   ++  +  + I  + G       +E++ ++ + 
Sbjct: 184 ISRYAVHQEGVGFILKKYGDSNATVR--TSGSSRLDNIRTIYGASTARELLEVSLENKKL 241

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            I + G      ++        +FIN R V+   +   I   YA  +P   +P + L L+
Sbjct: 242 GIGMNGLISNANYSAKKCIFL-LFINHRLVECSNLRKAIENVYAAYLPKHTHPFLYLSLQ 300

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST---SSVLSKKMISSFH 346
           I PR VDVN+HP K  ++F +   I + I   I+  +     S    +            
Sbjct: 301 ISPRNVDVNMHPTKHEVQFLHEDKIIDAIQNVIENKLLGANSSRTFLAQTFLPTTSGPTT 360

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQE 373
           +    + +     +S + +Q+K +  +
Sbjct: 361 KTKVIQDNAEVPISSGSISQKKAYAHQ 387


>gi|17136968|ref|NP_477022.1| Mlh1 [Drosophila melanogaster]
 gi|7304079|gb|AAF59117.1| Mlh1 [Drosophila melanogaster]
          Length = 664

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 240/565 (42%), Gaps = 66/565 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+S+ ++  +  GG    QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSTHIQVQVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 130 ATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT       +  +       +  E I  + G       +E + +      +    I
Sbjct: 190 PRVGFTLRKQGDAQPALRT-PVASSRSENIRIIYGAAISKELLEFSHRDEVYKFEAECLI 248

Query: 240 PTFNRGNANQFY-VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + +++ + YA  +P G +P V + L + P+ +DVN
Sbjct: 249 TQVNYSAKKCQMLLFINQRLVESTALRTSVDSIYATYLPRGHHPFVYMSLTLPPQNLDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI----------NKKGISTSSVLSKKMISSFHQD 348
           VHP K  + F     I + I Q ++  +           +  +  +  L +  ++   Q 
Sbjct: 309 VHPTKHEVHFLYQEEIVDSIKQQVEARLLGSNATRTFYKQLRLPGAPDLDETQLADKTQR 368

Query: 349 NAPKTHLPKYATSLT------------------NTQEKLFLQENRLSTNDLLPSDDPTYS 390
             PK  +   +T                     ++QE   L E          S +   S
Sbjct: 369 IYPKEMVRTDSTEQKLDKFLAPLVKSDSGVSSSSSQEASRLPEESFRVTAAKKSREVRLS 428

Query: 391 EDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
              D  +  E                   + +   + Q    L + +  +  E L +++M
Sbjct: 429 SVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRM 488

Query: 444 RQDFNSTK--ITSQTLLTPEIIDLLEGECALIMEHDE-------------DLHR------ 482
             +F +      S  L   E++ L     A     ++              L +      
Sbjct: 489 IYEFQNCSEITISPPLPLKELLILSLESEAAGWTPEDGDKAELADGAADILLKKAPIMRE 548

Query: 483 -LGIKAERFGPNAIAIREIPAILSK 506
             G++    G     +  +P++L +
Sbjct: 549 YFGLRISEDG----MLESLPSLLHQ 569


>gi|195474635|ref|XP_002089596.1| GE19183 [Drosophila yakuba]
 gi|194175697|gb|EDW89308.1| GE19183 [Drosophila yakuba]
          Length = 664

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 242/566 (42%), Gaps = 68/566 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSSHIQVHVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 70  IRREDLAIVCERFTTSKLTCFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCGFK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 130 ATYADGKLQGPPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEELQRLSEVLARYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--ELNEKSNEITLQGYT 237
           P V FT       +  +     N +  E I  + G       +     ++  +   +   
Sbjct: 190 PTVGFTLRKQGDAQPALRT-PVNSSRSENIRIIYGAAISKELLGFSHRDEVFKFDAECLI 248

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++    +Q  +FIN R V+   + + + + YA  +P G +P V + L + P+ +DV
Sbjct: 249 TQVNYS-AKKSQMLLFINQRLVESPALKTAVDSVYATYLPRGHHPFVYMSLTLPPQNLDV 307

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI----------NKKGISTSSVLSKKMISSFHQ 347
           NVHP K  + F     I + I Q ++  +           +  +  +  L +   +   Q
Sbjct: 308 NVHPTKHEVHFLYQEEIVDRIKQQVEAQLLGSNSTRTFYKQLRLPGAPDLDETQSADKTQ 367

Query: 348 DNAPKTHLPKYATSLT------------------NTQEKLFLQENRLSTNDLLPSDDPTY 389
              PK  +   AT                     ++QE   L E          S +   
Sbjct: 368 RIYPKELVRTDATEQKLDKFLAPLVKSDSGASSSSSQEAPRLPEESFRVTAARKSREVRL 427

Query: 390 SEDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           S   D  +  E                   + +   + Q    L + +  A  E L +++
Sbjct: 428 SSVLDMRQRVERQCSVQLRSTLKNLVYVGCVDEKRALFQHETHLYLCNTRAFSEELFYQR 487

Query: 443 MRQDFNS-TKITSQTLLTPEIIDL-------------LEGECALIMEHDEDLHR------ 482
           M  +F + ++IT    L  + + +                +  L     E L +      
Sbjct: 488 MIYEFQNCSEITIAPPLPLKDLLMLSLESEAAGWTPEDGNKGELADSAAEILLKKAPIMR 547

Query: 483 --LGIKAERFGPNAIAIREIPAILSK 506
              G++    G     +  +P++L +
Sbjct: 548 EYFGLRISEEG----MLESLPSLLHQ 569


>gi|238881740|gb|EEQ45378.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 717

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 124/422 (29%), Positives = 203/422 (48%), Gaps = 22/422 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L E +IN+IAAGEII +P+ A+KE++ENS+DA ++ +E ++  GG    QITDNG 
Sbjct: 7   TIKRLDESVINKIAAGEIIIQPANALKEMLENSIDARATMIEILVKDGGLKLLQITDNGH 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++  ++P+  +R  TSK+S  +D  +I T+GFRGEAL SI  +S L+++++ P +    
Sbjct: 67  GISKIDLPLLCERFATSKLSKFEDLESIATYGFRGEALASISHISRLSVITKQPNSKLAY 126

Query: 120 QIAISGEKIS-----------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +      ++              +P+A   GT + V DLF+ IP+RL  LKS+  E   I
Sbjct: 127 KAYYMNGQLCSSNFKPSNTNVEPKPIAGKDGTQIIVEDLFYNIPSRLRGLKSKSDEFAKI 186

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE----L 224
            D++ R AI    V F+         ++N +       ERI  V G    N  +E     
Sbjct: 187 LDIVGRYAIHCDNVGFSCKKYGDPLQQVNTRPQMP-IKERIRVVYGSAIANELLEIDGIS 245

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
           N++   + + G      +N     Q  +FIN R V  + +   I   ++  +P G +   
Sbjct: 246 NDELGLVKVSGVMTNANYNNKKKIQPIIFINHRLVTCEPLKRAINAVFSYFLPKGSHSFY 305

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKK 340
            L LEI P  +DVNVHP K  +RF N   I + I+  I   ++    S    T SV++K+
Sbjct: 306 YLSLEIKPENLDVNVHPTKREVRFLNEDEIIDTIVSEIHTKLSSVDTSRKFKTQSVITKR 365

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
             S    +        + +      + K+   +   S         P+ +  +   +E E
Sbjct: 366 RNSDEELEEHQLPKTLQPSLKKYRQENKMVRVDASQSKLSSFMQQQPSQNYHDVMRKEFE 425

Query: 401 AT 402
             
Sbjct: 426 YY 427


>gi|225024309|ref|ZP_03713501.1| hypothetical protein EIKCOROL_01184 [Eikenella corrodens ATCC
           23834]
 gi|224942894|gb|EEG24103.1| hypothetical protein EIKCOROL_01184 [Eikenella corrodens ATCC
           23834]
          Length = 453

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 147/455 (32%), Positives = 239/455 (52%), Gaps = 35/455 (7%)

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           +  R+A+A P ++F          K   QS N    ERI+ V+G DF   ++ ++  +  
Sbjct: 1   MFDRLALANPHIAFELVHNGKTTAKYPAQSQN----ERITAVLGADFQAASLPIDSGNGI 56

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           + L G    PTF +G ++Q Y F+N R V+DK +L   + AY + +     P  VL LE+
Sbjct: 57  LRLHGLIAKPTFAQGRSSQQYCFVNNRFVRDKVMLHAAKQAYRDVLHQQITPAFVLFLEL 116

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK--MISSFHQD 348
            P  VDVNVHP K+ IRFR+   +   +  ++ K +       +  +S    ++   H  
Sbjct: 117 PPEMVDVNVHPTKTEIRFRDSQAVHRLVFHTLNKTLADTRADQTDSVSNAGSLLQHIHSQ 176

Query: 349 NAPKTHLPKYATSLT------------NTQEKLFLQENRLSTNDLLPSDDPTYSEDND-- 394
             P++   +++ S +              Q++L LQE+R +          + SED +  
Sbjct: 177 RLPESGQGEFSGSPSARPPVAYSPARAPQQQRLTLQESRAAWQTYAELYKHSGSEDPELA 236

Query: 395 --------------PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
                          + E+ A  + LG A AQ+   YI++Q  + L+++D HAA ER+ +
Sbjct: 237 ALEQSRFAPGAEAARLPETHAEEHPLGFAIAQLLGIYILAQAENSLLLIDMHAAAERVNY 296

Query: 441 EKMRQDFNSTK-ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIRE 499
           EKM+    S   + SQ LL P   +    E A + E+ + L + G+     G + IA+R 
Sbjct: 297 EKMKAQRQSHGSLHSQQLLIPVSFEAGHEEMAALAEYADLLRQYGLDCSAVGSHTIAVRA 356

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P +LSK +IP+L R ++ E   + +  T+++R   IL+TMAC+GS+R+GR++   EMN 
Sbjct: 357 VPQMLSKADIPELARSMLQEAAHTGSIRTVEERENRILSTMACHGSVRAGRRLTLPEMNA 416

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           LLR+ME  P S+QCNHGRPT++KL L+D++ LF R
Sbjct: 417 LLRDMENTPRSNQCNHGRPTWVKLTLADLDSLFLR 451


>gi|326473631|gb|EGD97640.1| DNA mismatch repair protein Mlh1 [Trichophyton tonsurans CBS
           112818]
          Length = 813

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 114/362 (31%), Positives = 182/362 (50%), Gaps = 14/362 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE ++  GG    QITDNG 
Sbjct: 54  KIQALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEILVREGGLKLLQITDNGH 113

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   
Sbjct: 114 GIDHDDLSILCERFTTSKLQAFEDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAW 173

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P+A   GT + V DLF+ +P R    +S   E   + D+
Sbjct: 174 RAHYSDGKLVPAKPGQNASPKPIAGRKGTQITVEDLFYNVPTRRRAFRSASEEYAKVLDI 233

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSN 229
           + R A+     +F+          ++  S N +  +RI Q+ G    N   ++E++ K  
Sbjct: 234 VGRYAVHCSGTAFSCKKHGEAGVSLST-SINSSIVDRIRQLHGGAVANELVSLEVDGKRW 292

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                 +     ++        +FIN R V+   I   +   Y+  +P G +P V L LE
Sbjct: 293 GCHTSAWVTTANYH-AKKTTLLIFINHRAVESTAIKRAVEQTYSTFLPKGGHPFVYLDLE 351

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P+++DVNVHP K  + F N   I   I  +I+  +     S + +    +      + 
Sbjct: 352 IEPQRLDVNVHPTKREVNFLNEDEIIESICSAIRTKLAAVDSSRTFMTQTLLPGIRPPEP 411

Query: 350 AP 351
           AP
Sbjct: 412 AP 413


>gi|13446680|gb|AAK26449.1|AF285636_1 putative mismatch repair protein MutL [Burkholderia mallei]
          Length = 526

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 112/337 (33%), Positives = 182/337 (54%), Gaps = 11/337 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+ +           N          R+++++G+ F    + L+E++  + + G  G+P
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLPLDERAGPLAVYGCAGLP 262

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL-LLEIDPRQVDVNV 299
           T +RG A+   + I  R V+ +                 R   V    L++ P  VDVNV
Sbjct: 263 TASRGRADP-AIIIRQRPVRARQTAHARGARRIRGRDARRPISVERAFLDLPPEAVDVNV 321

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           HP+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 322 HPSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 358


>gi|68486675|ref|XP_712766.1| hypothetical protein CaO19.11638 [Candida albicans SC5314]
 gi|68486982|ref|XP_712616.1| hypothetical protein CaO19.4162 [Candida albicans SC5314]
 gi|46434019|gb|EAK93441.1| hypothetical protein CaO19.4162 [Candida albicans SC5314]
 gi|46434178|gb|EAK93595.1| hypothetical protein CaO19.11638 [Candida albicans SC5314]
          Length = 717

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 124/422 (29%), Positives = 203/422 (48%), Gaps = 22/422 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L E +IN+IAAGEII +P+ A+KE++ENS+DA ++ +E ++  GG    QITDNG 
Sbjct: 7   TIKRLDESVINKIAAGEIIIQPANALKEMLENSIDARATMIEILVKDGGLKLLQITDNGH 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++  ++P+  +R  TSK+S  +D  +I T+GFRGEAL SI  +S L+++++ P +    
Sbjct: 67  GISKIDLPLLCERFATSKLSKFEDLESIATYGFRGEALASISHISRLSVITKQPNSKLAY 126

Query: 120 QIAISGEKIS-----------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +      ++              +P+A   GT + V DLF+ IP+RL  LKS+  E   I
Sbjct: 127 KAYYMNGQLCSSNFKSSNTNVEPKPIAGKDGTQIIVEDLFYNIPSRLRGLKSKSDEFAKI 186

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE----L 224
            D++ R AI    V F+         ++N +       ERI  V G    N  +E     
Sbjct: 187 LDIVGRYAIHCDNVGFSCKKYGDPLQQVNTRPQMP-IKERIRVVYGSAIANELLEIDGIS 245

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
           N++   + + G      +N     Q  +FIN R V  + +   I   ++  +P G +   
Sbjct: 246 NDELGLVKVSGVMTNANYNNKKKIQPIIFINHRLVTCEPLKRAINAVFSYFLPKGSHSFY 305

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKK 340
            L LEI P  +DVNVHP K  +RF N   I + I+  I   ++    S    T SV++K+
Sbjct: 306 YLSLEIKPENLDVNVHPTKREVRFLNEDEIIDTIVSEIHTKLSSVDTSRKFKTQSVITKR 365

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
             S    +        + +      + K+   +   S         P+ +  +   +E E
Sbjct: 366 RNSDEELEEHQLPKTLQPSLKKYRQENKMVRVDASQSKLSSFMQQQPSQNYHDVMRKEFE 425

Query: 401 AT 402
             
Sbjct: 426 YY 427


>gi|258567578|ref|XP_002584533.1| hypothetical protein UREG_05222 [Uncinocarpus reesii 1704]
 gi|237905979|gb|EEP80380.1| hypothetical protein UREG_05222 [Uncinocarpus reesii 1704]
          Length = 719

 Score =  302 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 117/444 (26%), Positives = 201/444 (45%), Gaps = 21/444 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG 
Sbjct: 28  KIQALDPDVVNKIAAGEIIVAPMHALKELIENSVDAGATSVEILVKDGGLKLLQITDNGH 87

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   
Sbjct: 88  GIDHEDLPILCERFTTSKLKAFEDLSSIATYGFRGEALASISHIAHLTVTTKTSGSSCAW 147

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K+           +P A   GT + V DLF+ +P R    +S   E   I D+
Sbjct: 148 RAHYRDGKLVPAKPGQTPGPKPTAGRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDI 207

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
           + R A+    VSF+      +   ++  +T  +  +R+ Q+ G    N  +  + + +  
Sbjct: 208 VGRYAVHCDGVSFSCKKHGDSGVSVSTLAT-SSANDRVRQIYGSAVANELISFDVEDSTL 266

Query: 231 -ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                G       +        +FIN R+V+   +   +   Y+  +P G +P   L LE
Sbjct: 267 GFRATGLASNAN-HHAKRTTVLLFINHRSVESSAVRKAVEQTYSAFLPKGGHPFAYLDLE 325

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I+P++VDVN+HP K  + F N   I     + + + I+   +          +S  +   
Sbjct: 326 IEPQRVDVNIHPTKREVNFLNEDEIIELDPRGLTRIISCGQMQNEKDYVH--VSGQYPQT 383

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG-- 407
             +T      +   +  E    +   +    +        S  ++ + E  A+   +G  
Sbjct: 384 KVRTKKADAQSPAAHHSEPSGREAVNIRLTSVKNLRAEVRSTMHNTLTEISASLTYVGLV 443

Query: 408 ---IACAQIHQNYIISQTTDGLVI 428
                 A IH    +     G++ 
Sbjct: 444 DERRRIAAIHSAVNLYLLDYGMIC 467


>gi|194863555|ref|XP_001970498.1| GG23342 [Drosophila erecta]
 gi|190662365|gb|EDV59557.1| GG23342 [Drosophila erecta]
          Length = 664

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 140/566 (24%), Positives = 244/566 (43%), Gaps = 68/566 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSSHIQVQVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 130 ATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGYT 237
           P+V FT       +  +       +  E I  + G       +E +   +  +   +   
Sbjct: 190 PRVGFTLRKQGDAQPALRT-PVASSRSENIRIIYGAAISKELLEFSHRDEVFKFEAECLI 248

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++    +Q  +FIN R V+   + + + + YA  +P G++P V + L + P+ +DV
Sbjct: 249 TQVNYS-AKRSQMLLFINQRLVESSALKTAVDSVYATYLPRGQHPFVYMSLTLPPQNLDV 307

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI----------NKKGISTSSVLSKKMISSFHQ 347
           NVHP K  + F     I + I Q ++  +           +  +  +S L +   +   Q
Sbjct: 308 NVHPTKHEVHFLYQEEIVDRIKQQVEAQLLGSNSTRTFYKQLRLPGASDLDETQSADKTQ 367

Query: 348 DNAPKTHLPKYATSLT------------------NTQEKLFLQENRLSTNDLLPSDDPTY 389
              PK  +   AT                     ++QE   L E          S +   
Sbjct: 368 RIYPKELVRTDATEQKLDKFLAPLVKSDSGASSSSSQEARRLPEESFRVTAAKKSREVRL 427

Query: 390 SEDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           S   D  +  E                   + +   + Q    L + +     E L +++
Sbjct: 428 SSVLDMRQRVERQCSVQMRSTLKNMVYVGCVDERRTLFQHETHLYLCNTRTFSEELFYQR 487

Query: 443 MRQDFNS-TKITSQTLLTPEIIDL-------------LEGECALIMEHDEDLHR------ 482
           M  +F + ++IT    L  + + +                +  L     E L +      
Sbjct: 488 MIYEFQNCSEITITPPLPLKELLMLSLESEAAGWTPEDGDKAELADSAAEILLKKAPIMR 547

Query: 483 --LGIKAERFGPNAIAIREIPAILSK 506
              G++    G     +  +P++L +
Sbjct: 548 EYFGLRISEEG----MLETLPSLLHQ 569


>gi|299740046|ref|XP_001840436.2| DNA binding protein [Coprinopsis cinerea okayama7#130]
 gi|298404060|gb|EAU81492.2| DNA binding protein [Coprinopsis cinerea okayama7#130]
          Length = 778

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 179/365 (49%), Gaps = 34/365 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+KL + +IN+IAAGEII RP+ A+KELIENSLDA S+ ++  +  GG    QI DNG 
Sbjct: 10  PIKKLDKTLINRIAAGEIIHRPASALKELIENSLDAGSTSIKVTVKDGGLKLLQIQDNGC 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+S   D   I T+GFRGEAL SI  V+ L+++++  + +   
Sbjct: 70  GIRKSDLPILAERFTTSKLSSFSDLQKIATYGFRGEALASISHVARLSVVTKTKKESCAW 129

Query: 120 QIAI--------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +              + +   P A N GT + V +LF+  P RL+ L++   E   I DV
Sbjct: 130 KAHYLDGALVSSKPGRPAEPEPCAGNDGTTIIVENLFYNTPTRLSALRNNSEEYARILDV 189

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--------- 222
           + + AI  PKVSF      S   +++    N + P+ I  + G       +         
Sbjct: 190 MTKYAIHNPKVSFMCKKSGSGSPELST-PPNSDTPQSIRLLYGHSIAKELLHTEVGSSGG 248

Query: 223 -------------ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
                          +E   + + + Y   P +     N   +FIN R V+   +   + 
Sbjct: 249 DDDMDVDEADVRKPKDEIEGDWSAEVYFTNPNYQAKKFNFL-LFINHRMVESPRMKRALE 307

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            AY   +P G  P V L LEIDP+ VDVNVHP K  + F     I + I  ++QK ++ K
Sbjct: 308 AAYHSILPKGASPFVYLSLEIDPKNVDVNVHPTKREVHFLYEEEITDRICSAVQKTLSAK 367

Query: 330 GISTS 334
             S S
Sbjct: 368 ASSRS 372


>gi|195024672|ref|XP_001985918.1| GH21079 [Drosophila grimshawi]
 gi|193901918|gb|EDW00785.1| GH21079 [Drosophila grimshawi]
          Length = 662

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/489 (25%), Positives = 214/489 (43%), Gaps = 42/489 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL + ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 8   IKKLDQVVVNRIAAGEIIQRPANALKELLENSLDAKSSHIQVNVKSGGLKLLQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+S  +D + I TFGFRGEAL SI  V+HL++ ++      G +
Sbjct: 68  IRKEDLAIVCERFTTSKLSKFEDLTEIATFGFRGEALASISHVAHLSIQTKTASEKCGYK 127

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K + + +P A N GTI+ + DLF+T+P R   LKS   E   I+DV+ + A+  
Sbjct: 128 ASYSDGKLLDAAKPCAGNQGTIITIEDLFYTMPQRRQALKSPAEEFQKISDVLAKYAVHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V+F                   +  E I  + G       +E + K      +    +
Sbjct: 188 PQVAFVLRKQGEQPT--LKTQACSSRTENIRAIYGGAVAKELMEFSHKDEMFRFELQCQL 245

Query: 240 PTFNRGNAN-QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + + I   Y   +P G++P V + L + P+ +DVN
Sbjct: 246 TQVNYAAKKSTLLLFINHRLVESPALKAAIDGVYTTYLPRGQHPFVYMSLVMPPQNLDVN 305

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-------------------------------- 326
           VHP K  + F     I   I   ++  +                                
Sbjct: 306 VHPTKHEVHFLYQDEIIERIKLQVEAKLLGSNATRSFYKQLKLPGSTEVETSTQTLDKTQ 365

Query: 327 --NKKGISTSSVLSK--KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
             +K+ + T +   K  K      + ++  +      T   + +E   +   R S    L
Sbjct: 366 RCDKEMVRTDATEQKLDKFFRPLEKSDSGLSASSGNETPPASQEESFRVTAARKSKEVRL 425

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            S                 +  +  +    + + + + Q    L + +  A  E L +++
Sbjct: 426 TSVLDMQQRVERQCHIELRSILKQLVYVGCVDERHALFQHQTHLYMCNTCALSEELYYQR 485

Query: 443 MRQDFNSTK 451
           +  +F +  
Sbjct: 486 LVYEFQNCG 494


>gi|297813357|ref|XP_002874562.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320399|gb|EFH50821.1| hypothetical protein ARALYDRAFT_911184 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 727

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/556 (21%), Positives = 230/556 (41%), Gaps = 41/556 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L E ++N+IAAGE+I+RP  A+KEL+ENSLDA+SS +  V+  GG    Q++D+G 
Sbjct: 18  KIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSDDGH 77

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK++  +D  ++ + GFRGEAL S+  V+H+T+ +       G 
Sbjct: 78  GIRREDLPILCERHTTSKLTKYEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQIHGY 137

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     +    +  A   GT + V +LF+ + AR   L++   +   I D++ RMAI 
Sbjct: 138 RVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMTARRKTLQNSADDYGKIVDLLSRMAIH 197

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNEKSNEITL 233
           +  VSF+     + +  ++   +     + I  V G     N +       +       +
Sbjct: 198 HNNVSFSCRKHGAVKADVHSVMSPSRL-DSIRSVYGVSVAKNLMKVEVSSCDPSGCTFDM 256

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +G+     +         +FIN R V+   +   I   YA T+P    P V + + +   
Sbjct: 257 EGFISNSNY-VSKKTILVLFINDRLVECSALKRAIEIVYAATLPKASKPFVYMSINLPRE 315

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VD+N+HP K  +   N  II   I   ++  +     + +    ++ +           
Sbjct: 316 HVDINIHPTKKEVSLLNQEIIIEMIQSEVEVKLR--NANDTRTFQEQKVEYIQSTLTS-- 371

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
                  S +    K   Q+ +    + +   D +              H       +  
Sbjct: 372 -----PRSDSTVSPKPSGQKAQKVPVNKMVRTDSSDPAGRLHAFLQPKPHNLPDKVSSLS 426

Query: 414 HQNYIISQTTDGLVIVDQHAAHERL----------IFEKMRQDFN---STKITSQTLLTP 460
                + Q  +     D  +  E +          + E +R       +  + +      
Sbjct: 427 VVRSSVRQRRNPKETADLSSVQELIAGVDSCCHPGLLETVRNCTYVGMADDVFALVQYNT 486

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            +        +  + + + L R       F  NAI +   PA LS+  +  L  + +D  
Sbjct: 487 HLYLANVVNLSKELMYQQTLRR----FAHF--NAIQL-SDPAPLSELILLALKEEDLD-- 537

Query: 521 IDSSTTYTLQDRIENI 536
            ++     L++RI  +
Sbjct: 538 PETDKNDDLKERIAEM 553


>gi|195123472|ref|XP_002006230.1| GI18680 [Drosophila mojavensis]
 gi|193911298|gb|EDW10165.1| GI18680 [Drosophila mojavensis]
          Length = 659

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 147/604 (24%), Positives = 249/604 (41%), Gaps = 71/604 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL E +IN+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 7   IKKLDEVVINRIAAGEIIQRPANALKELLENSLDAKSSHIQVNVKSGGLKLLQIQDNGTG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+S  +D + I TFGFRGEAL SI  V+HLT+ ++      G +
Sbjct: 67  IRKEDLSIVCERFTTSKLSKFEDLTEIATFGFRGEALASISHVAHLTIQTKTASERCGYK 126

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K ++  +P A N GTI+ + DLF+T+P R   LKS   E   I+DV+ + A+  
Sbjct: 127 ATYADGKLLAPPKPCAGNQGTIITIEDLFYTMPQRRQALKSPAEEFQKISDVLAKYAVHN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F                   +  E I  + G       +E + K      +    +
Sbjct: 187 PQVGFVLRKQGEQPS--LKTQACSSRTENIRAIYGAAVAKELMEFSHKDEMFKFELECQL 244

Query: 240 PTFNRGNAN-QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + + + T YA  +P G++P V + L + P+ +DVN
Sbjct: 245 TQVNYSAKKSTLLLFINHRLVESSALKTALDTVYATYLPRGQHPFVYMSLMLPPQNLDVN 304

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-------------------------------- 326
           VHP K  + F     I   I Q ++  +                                
Sbjct: 305 VHPTKHEVHFLYQDEIIERIKQQVEAKLLGSNATRSFYKQLKLPGTVDLEANQTLDKTQR 364

Query: 327 -NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF-LQENRLSTNDLLPS 384
             +K +  +    +K+   F       + L   + + T +QE+ F +   R S    L S
Sbjct: 365 IYEKDMVRTDATEQKLEKFFKALEKTDSGLSSSSGNETLSQEESFRVTAARKSKEVRLTS 424

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
                       + S  + ++  +    + + + + Q    L + D  A  E L ++++ 
Sbjct: 425 VLNMQQSVERQCQVSLRSIFKQLVYVGCVDERHALFQHETRLYMCDTFALSEELYYQRLI 484

Query: 445 QDFNSTKITSQTLLT---------------------PEIIDLLEGECALIMEHDEDLHR- 482
            +F +                                +  +L +   A++ E    +   
Sbjct: 485 YEFQNCPEVRVVPPLSLQQLLLIALDSRAAGWVPEDGDKTELADNAVAILQEMAPLMREY 544

Query: 483 LGIKAERFGPNAIAIREIPAILSK-----KNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
             ++    G     +  +PA+L +       +P  L  +  E+  S  T   +       
Sbjct: 545 FSLRISEQG----CLESLPALLPQHVPSRAQLPVYLLRLATEVEWSEETQCFETFCRETA 600

Query: 538 ATMA 541
              A
Sbjct: 601 RYYA 604


>gi|254421106|ref|ZP_05034830.1| MutL C terminal dimerisation domain family [Brevundimonas sp. BAL3]
 gi|196187283|gb|EDX82259.1| MutL C terminal dimerisation domain family [Brevundimonas sp. BAL3]
          Length = 389

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 152/389 (39%), Positives = 227/389 (58%), Gaps = 26/389 (6%)

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           + L GY G+PT++RGNA   Y+F+NGR V+D+ +   +R AYA+ +   R+P  VL L+I
Sbjct: 1   MRLSGYAGLPTYSRGNAAHQYLFVNGRPVKDRLLQGALRGAYADFLARDRHPAAVLFLDI 60

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           DP  VDVNVHPAK+ +RFR+P ++R  I+ +++ A++  G   S+ ++   ++ F     
Sbjct: 61  DPLYVDVNVHPAKAEVRFRDPALVRGLIVGALRHALHAAGHRASTTVAADAMAGFQPHTG 120

Query: 351 PKTHLPKYATSLTNTQ----------------------EKLFLQENR---LSTNDLLPSD 385
             T  P Y+ S  + Q                      E+    E R    S        
Sbjct: 121 VSTG-PAYSPSSPSAQGFSGWTSWSQPAAAAQVLPGLNERSARVEPRWDGPSWPSHPAQA 179

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +   +  +      +   Y LG A  Q+H NYI++QT DGLVIVDQHAAHERL++E+M+ 
Sbjct: 180 NDLATGHSPLATPLDPLDYPLGAARGQLHANYIVAQTRDGLVIVDQHAAHERLVYERMKA 239

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS 505
                 +T Q LLTPE++DL   E   +    E+L  +G+  E FG  A+ +RE PA+L 
Sbjct: 240 QMAEGSVTRQALLTPEVVDLDPAEAERVASRAEELAEMGLIVEAFGAGAVLVRETPAMLG 299

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             ++  L+RDI D++ +     +L++R+  +  TMAC+GS+RSGR + + EMN LLR+ME
Sbjct: 300 DTDVQGLIRDIADDLAEHGAALSLKERMAEVCGTMACHGSVRSGRILSAPEMNALLRQME 359

Query: 566 KNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             P+S QCNHGRPT+++LKL D+EKLFGR
Sbjct: 360 ATPHSGQCNHGRPTYVELKLHDLEKLFGR 388


>gi|108803144|ref|YP_643081.1| DNA mismatch repair protein MutL [Rubrobacter xylanophilus DSM
           9941]
 gi|108764387|gb|ABG03269.1| DNA mismatch repair protein MutL [Rubrobacter xylanophilus DSM
           9941]
          Length = 532

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 9/328 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++R L   +  +IAAGE+IERP+ A+KEL+EN+LDA ++RVE  + GGG S  ++ D+G 
Sbjct: 20  RVRILPPDVARRIAAGEVIERPASAVKELVENALDAGATRVEVEVEGGGTSLIRVRDDGA 79

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +   A+ RH TSK+   DD + + T GFRGEAL +IGAVS L+L +R      G 
Sbjct: 80  GMLPGDAERALGRHATSKLRCVDDLARVSTLGFRGEALHAIGAVSSLSLTTRAAGEALGR 139

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +   + +   P A  PGT VEVRDLF  +P R  FL + + E N +   +  +A++ 
Sbjct: 140 RVRVLAGEPAGSEPAAHPPGTTVEVRDLFLNLPVRRGFLGTARAEGNAVARAVEALALSR 199

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F           +   +      ER++QV G       + L++      ++G    
Sbjct: 200 PEVGFFLRAEGRPALSLPPAAG---LRERVAQVHGLALAETLLPLSDP----AVRGLVSP 252

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            + +       +V +NGR V        +  AYA+ +P GR+P   L LE+DP +VDVNV
Sbjct: 253 LSASFPTRRYLHVTVNGRVVDPDSFAPAVAKAYADLLPKGRHPAAFLRLELDPEEVDVNV 312

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           HPAK  +R R    +   ++ +++ A+ 
Sbjct: 313 HPAKRAVRLRGGRSVYPLVVGAVRSALE 340



 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q     I++Q  + L+++DQH AHER+++E++        +         +    E  
Sbjct: 361 IGQFAGRCIVAQRGEELLLIDQHGAHERVLYERLLYGPPERPVALDP--PRVVRLPGELG 418

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             ++   +E+L   G + E FG +A+ +   P      ++   L      +         
Sbjct: 419 REVLWSFEEELASAGFRVEPFGEDAVRVLAAPR--GVGDVAAGLVGAAQALAGG------ 470

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
               E+ L  +AC G+ R G ++    M RLL +         C HGRP   ++ L ++ 
Sbjct: 471 ----EDYLKALACRGADRFGEELDRARMARLLEDWASTRFPEVCPHGRPIVRRISLGELL 526

Query: 590 KLFGR 594
           + FGR
Sbjct: 527 RGFGR 531


>gi|169611282|ref|XP_001799059.1| hypothetical protein SNOG_08751 [Phaeosphaeria nodorum SN15]
 gi|111062799|gb|EAT83919.1| hypothetical protein SNOG_08751 [Phaeosphaeria nodorum SN15]
          Length = 751

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 120/413 (29%), Positives = 197/413 (47%), Gaps = 30/413 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L++ ++N+IAAGEII  P  A+KELIEN++DA S+ +E V+  GG    QITDNG 
Sbjct: 31  RIKALAQDVVNKIAAGEIIVAPVHALKELIENAVDAGSTALEVVVKDGGLKLLQITDNGH 90

Query: 62  GMT----------------SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV 103
           G+                  E++P+  +R  TSK+   +D ++I T+GFRGEAL SI  +
Sbjct: 91  GIDVSITIKCSSQPADKAQKEDLPILCERFTTSKLKAFEDLTSIGTYGFRGEALASISHI 150

Query: 104 SHLTLMSRPPQNNTGAQIAISGEKISSVRPVA--------MNPGTIVEVRDLFFTIPARL 155
           +HL + +R  +++   +   +G K++S +P             GT + V DLF+ +P+R 
Sbjct: 151 AHLRVTTRTKESSCAWEAHYAGGKLASPKPGQTAEPKPKAGRQGTQITVEDLFYNVPSRR 210

Query: 156 NFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
              +S   E   I +++ + A+    VSF+      N         +    +RI Q+ G 
Sbjct: 211 RAFRSASEEYAKILELVGKYAVHCLGVSFSCKKAGDNSGSSVSVPASATVKDRIRQIHGG 270

Query: 216 DFINNAVELNEK--SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
              N  VEL  +        +G+     ++        +FIN R V    I  ++   YA
Sbjct: 271 AVANELVELKSEDDRWGFKCEGWISSANYS-AKRTSMLLFINHRAVDSAIIKKSVEQTYA 329

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
             +P G +P   L LEI+P +VDVNVHP K  + F N   I   I   I+ +++K   S 
Sbjct: 330 AFLPKGNHPFFYLSLEIEPARVDVNVHPTKREVHFLNEDEIVAMICDEIRSSLSKVDTSR 389

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
           S  +++ ++S+     A        AT+   T +      +R         ++
Sbjct: 390 S-FMTQSLLSNPKVPFATPMKQIPLATTTPATDDVSDRSASRAPKTATRRENN 441


>gi|195581491|ref|XP_002080567.1| GD10548 [Drosophila simulans]
 gi|194192576|gb|EDX06152.1| GD10548 [Drosophila simulans]
          Length = 664

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 136/566 (24%), Positives = 239/566 (42%), Gaps = 68/566 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSSHIQVQVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S+I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSHIATFGFRGEALASISHVAHLSIQTKTAKEKCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 130 ATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPAEEFQRLSEVLARYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGYT 237
           P+V FT       +  +       +  E I  + G       +E +   +  +   +   
Sbjct: 190 PRVGFTLRKQGEAQPALRT-PVASSRSENIRIIYGAAISKELLEFSHRDEVFKFEAECLI 248

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++     Q  +FIN R V+   + +++ + YA  +P G +P V + L + P+ +DV
Sbjct: 249 SQVNYS-AKKCQMLLFINQRLVESTALRTSVDSVYATYLPRGHHPFVYMSLTLPPQNLDV 307

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAI----------NKKGISTSSVLSKKMISSFHQ 347
           NVHP K  + F     I + I Q ++  +           +  +  +  L +   +   Q
Sbjct: 308 NVHPTKHEVHFLYQEEIADSIKQQVEARLLGSNATRTFYKQLRLPGAPDLDETQSADKTQ 367

Query: 348 DNAPKTHLPKYATSLT------------------NTQEKLFLQENRLSTNDLLPSDDPTY 389
              PK  +   +                      ++QE   L E          S +   
Sbjct: 368 RIYPKELVRTDSNEQKLDKFLAPLVKSDSGMSSSSSQEATRLPEESFRITAAKKSREVRL 427

Query: 390 SEDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           S   D  +  E                   + +   + Q    L + +  +  E L +++
Sbjct: 428 SSVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQR 487

Query: 443 MRQDFNSTKITSQTLLTPEIIDL--------------LEGECALIMEHDEDLHR------ 482
           M  +F +    + T   P    L                 +  L     + L +      
Sbjct: 488 MIYEFQNCSEITITPPLPLKALLVLSLESEAAGWTSEDGDKAELADSAADILLKKAPIMK 547

Query: 483 --LGIKAERFGPNAIAIREIPAILSK 506
              G++    G     +  +P++L +
Sbjct: 548 EYFGLRISEDG----MLESLPSLLHQ 569


>gi|302496819|ref|XP_003010410.1| DNA mismatch repair protein, putative [Arthroderma benhamiae CBS
           112371]
 gi|291173953|gb|EFE29770.1| DNA mismatch repair protein, putative [Arthroderma benhamiae CBS
           112371]
          Length = 840

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 183/369 (49%), Gaps = 16/369 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE ++  GG    QITDNG G+
Sbjct: 84  KALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEILVREGGLKLLQITDNGHGI 143

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
             +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   + 
Sbjct: 144 DHDDLSILCERFTTSKLQAFEDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAWRA 203

Query: 122 AISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
             S  K+           +P+A   GT + V DLF+ +P R    +S   E   I D++ 
Sbjct: 204 HYSDGKLVPAKPGQNASPKPIAGRKGTQITVEDLFYNVPTRRRAFRSASEEYAKILDIVG 263

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEI 231
           R A+     +F+          ++  S N +  +RI Q+ G    N   ++E++ K    
Sbjct: 264 RYAVHCSGTAFSCKKHGEAGVSLST-SINSSILDRIRQLHGGAVANELVSLEVDGKRWGC 322

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
               +     ++        +FIN R V+   I   +   Y+  +P G +P V L LEI+
Sbjct: 323 RASAWVTNANYH-AKKTTLLIFINHRAVESTAIKRAVEQTYSTFLPKGGHPFVYLDLEIE 381

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P+++DVNVHP K  + F N   I   I  +I+  +    + +S     + +    +   P
Sbjct: 382 PQRLDVNVHPTKREVNFLNEDEIIESICSAIRTKLA--AVDSSRTFMTQTLLPGIRPPEP 439

Query: 352 KTHLPKYAT 360
            T     ++
Sbjct: 440 ATLAGDASS 448


>gi|332021655|gb|EGI62014.1| DNA mismatch repair protein Mlh1 [Acromyrmex echinatior]
          Length = 862

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 190/399 (47%), Gaps = 7/399 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIRKL E ++N+IAAGEII+RP+ A+KELIENSLDA+++ ++     GG    QI DNG 
Sbjct: 6   KIRKLDEVVVNRIAAGEIIQRPANALKELIENSLDAKATNIQITAKEGGLKLLQIQDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+   +D   + TFGFRGEAL SI  ++ LT+ ++        
Sbjct: 66  GIRKEDMEIVCERFTTSKLQKFEDLGALTTFGFRGEALASISHIALLTITTKTADEKCAY 125

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +    K+     P A N GT++ + +LF+ +  R   L +   E   IT+V+ R A+ 
Sbjct: 126 KASYINSKLKAPPVPCAGNQGTVITIENLFYNVATRRKALSNPSEEFTKITEVVMRYAVH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITLQGY 236
              + FT         ++     N      I  + G         VEL++K  +  + G 
Sbjct: 186 NSAIGFTLKKHGEPSSQVRT-PYNSTKQNNIRILYGNPVARELLEVELDDKDYKFKMHGL 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P +         +FIN R V    I   +   Y+  +P   +P   + L+I+P+ +D
Sbjct: 245 VTNPNYT-NKRMVMLLFINNRLVDSASIRKMLEDVYSVYLPKKAHPWCYISLDINPQNID 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  +RF +   I   I  ++ + +     S +  L  ++  +       +  LP
Sbjct: 304 VNVHPTKHEVRFLHEDAIIERIKFALDERLTGNSASRTFYLQARLPKADITKEVLEEVLP 363

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
           +Y    ++  +K+  +E   + +     D   ++   + 
Sbjct: 364 EYNKGNSDKLKKIHAREMIRTDSSDQKLDKFNFTIHFEQ 402


>gi|195332392|ref|XP_002032882.1| GM21014 [Drosophila sechellia]
 gi|194124852|gb|EDW46895.1| GM21014 [Drosophila sechellia]
          Length = 664

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 138/565 (24%), Positives = 241/565 (42%), Gaps = 66/565 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSSHIQVQVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 70  IRREDLAIVCERFTTSKLTRFEDLSQIATFGFRGEALASISHVAHLSIQTKTAKEKCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 130 ATYADGKLQGQPKPCAGNQGTIICIEDLFYNMPQRRQALRSPGEEFQRLSEVLARYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT       +  +       +  E I  + G       +E + +      +    I
Sbjct: 190 PRVGFTLRKQGDAQPALRT-PVASSRSENIRIIYGAAISKELLEFSHRDEVFKFEAECLI 248

Query: 240 PTFNRGNANQFY-VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + +++ + YA  +P G +P V + L + P+ +DVN
Sbjct: 249 TQVNYSAKKCQMLLFINQRLVESTALRTSVDSVYATYLPRGHHPFVYMSLTLPPQNLDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI----------NKKGISTSSVLSKKMISSFHQD 348
           VHP K  + F     I + I Q ++  +           +  +  +  L +   +   Q 
Sbjct: 309 VHPTKHEVHFLYQEEIADSIKQQVEARLLGSNATRTFYKQLRLPGAPDLDETQSADKTQR 368

Query: 349 NAPKTHLPKYATSLT------------------NTQEKLFLQENRLSTNDLLPSDDPTYS 390
             PK  +   +T                     ++QE   L E          S +   S
Sbjct: 369 IYPKELVRTDSTEQKLDKFLAPLVKSDSGMSSSSSQEATRLPEESFRVTAAKKSREVRLS 428

Query: 391 EDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
              D  +  E                   + +   + Q    L + +  +  E L +++M
Sbjct: 429 SVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQHETRLYMCNTRSFSEELFYQRM 488

Query: 444 RQDFNS-TKITSQTLLTPEIIDL-------------LEGECALIMEHDEDLHR------- 482
             +F + ++IT    L  + + +                +  L     + L +       
Sbjct: 489 IYEFQNCSEITITPPLPLKELLVLSLESEAAGWTPEDGDKAELADSAADILLKKAPIMKE 548

Query: 483 -LGIKAERFGPNAIAIREIPAILSK 506
             G++    G     +  +P++L +
Sbjct: 549 YFGLRISEDG----MLESLPSLLHQ 569


>gi|71022249|ref|XP_761355.1| hypothetical protein UM05208.1 [Ustilago maydis 521]
 gi|46097663|gb|EAK82896.1| hypothetical protein UM05208.1 [Ustilago maydis 521]
          Length = 831

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 187/390 (47%), Gaps = 18/390 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L E ++N+IAAGEII RP+ A+KELIENSLDA ++ +   +  GG    QI DNG 
Sbjct: 21  PIKRLDESVVNRIAAGEIIHRPANALKELIENSLDAGATLIRITLKEGGIKMLQIQDNGS 80

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTG 118
           G+   ++P+  +R  TSK+ D  D  N+ TFGFRGEAL SI  V + + ++S+    +  
Sbjct: 81  GIQPGDLPLLCERFATSKLRDFGDLDNMATFGFRGEALASISYVTASMNVVSKTKHQHCA 140

Query: 119 AQIAISGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITD 170
            +   +  +++  +P         A   GT++   DLF+ +P R   L+S   E N   D
Sbjct: 141 YRAYYANGRLAPPKPGQSADPKQCAGTDGTLITAEDLFYNVPQRRRALRSAADEYNRALD 200

Query: 171 VIRRMAIAY--PKVSFTFSTIKSNRYKMN-FQSTNGNFPERISQVIGEDFINNAVELN-- 225
           V+ + A+ Y    V F      +N   +N   S   +  + I  + G       VELN  
Sbjct: 201 VVSKYAVHYGGRGVGFVCRKASTNSTDLNTPSSPTNSTLDTIRILHGNAVARELVELNDV 260

Query: 226 -EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
            +        G+     ++         FIN R V+   +  +I   YA  +P G +P V
Sbjct: 261 SDDQLGFQCHGWISGANWS-SKRTTLLCFINNRLVECPLLKRSIEALYATLLPKGGHPWV 319

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L + I+P  VDVNVHP K  + F +   I   I Q+ QK +     S +   S+ ++  
Sbjct: 320 YLSITINPANVDVNVHPTKKEVHFLHQDEIVELICQAAQKRLAGANSSRTFAFSQAVLPV 379

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
              D    T     A+ +T+  EK  LQ+ 
Sbjct: 380 LAPDVGIMTSSAALASRVTDQAEKPPLQQA 409


>gi|218189774|gb|EEC72201.1| hypothetical protein OsI_05282 [Oryza sativa Indica Group]
          Length = 1224

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 184/380 (48%), Gaps = 10/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E ++N+IAAGE+I+RPS A+KELIENSLDA +S V   +  GG    Q++D+G 
Sbjct: 17  RIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGH 76

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +RH TSK+S  +D   I + GFRGEAL S+  V H+T+ +       G 
Sbjct: 77  GIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGY 136

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     + +  +P A   GT V V +LF+ + AR   L++   +   I D I R A+ 
Sbjct: 137 RVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSNDDYPKIVDFISRFAVH 196

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-----ITL 233
           +  V+F+     +NR  ++  ST+    + I  V G   + + +E+     +       +
Sbjct: 197 HINVTFSCRKHGANRADVHSASTSSRL-DAIRSVYGASVVRDLIEIKVSYEDAADSIFKM 255

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY     +         +FIN R V    +   I   Y+ T+P    P + + + +   
Sbjct: 256 DGYISNANYVAKKITMI-LFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIHLPSE 314

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVN+HP K  +   N   I   I  +I++ +     +         +S   Q N  K 
Sbjct: 315 HVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQALNLSGIAQANPQKD 374

Query: 354 HLPKYATSLTNTQEKLFLQE 373
            + + +       +K+ + +
Sbjct: 375 KVSEASMGSGTKSQKIPVSQ 394


>gi|328697305|ref|XP_001945011.2| PREDICTED: DNA mismatch repair protein Mlh1-like [Acyrthosiphon
           pisum]
          Length = 677

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 110/337 (32%), Positives = 176/337 (52%), Gaps = 8/337 (2%)

Query: 2   KI-RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
            I RKL+E ++N+IAAGE+I+RP+ A+KEL+ENSLDA+S+ ++  +  GG    QI DNG
Sbjct: 6   PIVRKLAEDVVNRIAAGEVIQRPANALKELLENSLDAKSTNIQVTLKNGGLKLLQIQDNG 65

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+ +E++ +  +R  TSK+   +D + I T+GFRGEAL SI  V+HLT+ ++       
Sbjct: 66  TGIRTEDLGIVCERFTTSKLQQFEDLTKISTYGFRGEALASISHVAHLTITTKTNGALCA 125

Query: 119 AQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            +     G+  +  +  A N GTI+ V DLF  I  R   +KS   E   + +V+ R AI
Sbjct: 126 YKGLYKDGKLKAPPKSCAGNVGTIITVEDLFHNIATRKKSMKSFNEEHLKVVEVVSRYAI 185

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI--TLQG 235
             P V FT         ++          + I  + G       +E+N+  N +   ++G
Sbjct: 186 HNPLVGFTVKKQGELLTEVKTNQG-STHIDNIQAIYGSAISRALLEVNDNCNILKVKIKG 244

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y   P F+        +FIN R V  + +   +   Y+  +  G +P + L L +DP  V
Sbjct: 245 YVSNPNFSAKKQIFI-LFINDRLVDSQGLRKAVDQVYSIYLAKGSHPFIYLSLNLDPMNV 303

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           DVNVHP K  + F +   + + ++ +IQ  ++    S
Sbjct: 304 DVNVHPTKHEVHFLHEDKVIDKVVDAIQDKLSGTNTS 340


>gi|242055637|ref|XP_002456964.1| hypothetical protein SORBIDRAFT_03g046470 [Sorghum bicolor]
 gi|241928939|gb|EES02084.1| hypothetical protein SORBIDRAFT_03g046470 [Sorghum bicolor]
          Length = 721

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 169/337 (50%), Gaps = 10/337 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E ++N+IAAGE+I+RPS A+KEL+ENSLDA +S V   +  GG    Q++D+G 
Sbjct: 16  RIRRLEESVVNRIAAGEVIQRPSSAVKELVENSLDAGASTVSVTVKDGGLKLIQVSDDGH 75

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK+S  +D   I + GFRGEAL S+  V H+T+ +       G 
Sbjct: 76  GIRFEDLPILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGY 135

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     G   +  +P A   GT V V +LF+ + AR   L++   +   + D I R A+ 
Sbjct: 136 RVCYKDGVMENEPKPCAAVKGTQVMVENLFYNMVARRKTLQNSNDDYPKVVDFISRFAVH 195

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-----ITL 233
           +  V+F+     +NR  ++  ST+    + I  V G   + + +E+     +       +
Sbjct: 196 HINVNFSCRKHGANRADVHSSSTSSRL-DAIRNVYGASVVRDLIEIEVSDEDAGDAVFKM 254

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY     +         +FIN R V    +   I   Y+ T+P    P + + + +   
Sbjct: 255 DGYISNANYVAKKITMI-LFINDRLVDCTSLKRAIEFVYSATLPQASKPFIYMSINLPSE 313

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            VDVN+HP K  +   N   I   I  +I++ +    
Sbjct: 314 HVDVNIHPTKKEVSLLNQERIIETIKNTIEEKLRNSN 350


>gi|224146324|ref|XP_002325965.1| predicted protein [Populus trichocarpa]
 gi|222862840|gb|EEF00347.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 17/382 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E ++N+IAAGE+I+RP  AIKEL+ENSLDA S+ +  V+  GG    Q++D+G 
Sbjct: 33  KIHRLDESVVNRIAAGEVIQRPVSAIKELVENSLDAHSTSINVVVKDGGLKLIQVSDDGH 92

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK++  +D  +I + GFRGEAL S+  V H+T+ +  P    G+
Sbjct: 93  GIRREDLPILCERHTTSKLTNYEDLQSIKSMGFRGEALASMTYVGHVTVTTITPGKLHGS 152

Query: 120 -QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                 G      +P A   GT + V +LF+ + AR    ++   + + I D++ R AI 
Sbjct: 153 GVSYRDGVMEDEPKPCAAVKGTQIMVENLFYNMIARRKTFQNSSDDYSKIVDLLSRFAIH 212

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNEKSNEITL 233
           +  VSF+     ++R  ++  +T+    + I  V G     N +     + +  S+   +
Sbjct: 213 HINVSFSCRKHGASRADVHSVTTSSRL-DSIRSVYGVSVALNLMKIEVPDSDPSSSVFNM 271

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G      +         +FIN R V+   +   I   YA T+P    P + + + + P 
Sbjct: 272 DGLISNSNY-VAKKTTMVLFINDRLVECTALKRAIEIVYAATLPKASKPFIYMSIVLPPE 330

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVNVHP K  +   N   I N I  +++  +       +    ++ +     D++P  
Sbjct: 331 HVDVNVHPTKREVSLLNQEFIINTIQSAVESKLRNSNE--ARTFQEQTL-----DSSPSV 383

Query: 354 HLPKYATSLTNTQEKLFLQENR 375
            L     S  N     +  +++
Sbjct: 384 TLSAKKDSNVNPSPSPYGSKSQ 405


>gi|301120306|ref|XP_002907880.1| DNA mismatch repair protein, putative [Phytophthora infestans
           T30-4]
 gi|262102911|gb|EEY60963.1| DNA mismatch repair protein, putative [Phytophthora infestans
           T30-4]
          Length = 776

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 102/354 (28%), Positives = 175/354 (49%), Gaps = 23/354 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS  ++N+IAAGE++ RP+ A+KEL+ENSLDA ++ V   ++ GG    QI DNG 
Sbjct: 6   RIQRLSPDVVNRIAAGEVVHRPANAVKELLENSLDAGATNVAVAVSQGGLKLLQIQDNGR 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D  +I +FGFRGEAL SI  V+H+++ SR        
Sbjct: 66  GIQRQDLEIVCERFTTSKLKSFEDLKDIKSFGFRGEALASISHVAHVSITSRTADQPCAY 125

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           + +    K+        +  +P A   GT + V DLF+ +  R   LK+   +   I DV
Sbjct: 126 KASYRDGKLVSKRPGESNDPKPCAGKNGTQIVVEDLFYNLSTRKQALKNTSEQYTRILDV 185

Query: 172 IRRMAIAY--PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--- 226
           +++ AI +    V F     + +   +N   ++    + I  + G    +          
Sbjct: 186 VQKYAIHFGAKGVGFVCKKHRESSCGVNTTQSSSQL-DAIRTIYGSKLASELNPFEHVRD 244

Query: 227 ------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
                    +  ++GY     ++   +N   +FIN R V+   +       Y+  +P   
Sbjct: 245 ATAAGSMDLQRQVRGYISNANYHLKKSNFI-LFINDRLVECPSLKRACEYVYSLYLPKNT 303

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           +P + L +E+ PR +DVNVHP K  + F +   I + I Q+I+K +     S S
Sbjct: 304 HPFIYLSMELPPRNIDVNVHPTKREVHFLHEEDIVDSISQAIEKQLKGSNESRS 357


>gi|302678109|ref|XP_003028737.1| hypothetical protein SCHCODRAFT_59880 [Schizophyllum commune H4-8]
 gi|300102426|gb|EFI93834.1| hypothetical protein SCHCODRAFT_59880 [Schizophyllum commune H4-8]
          Length = 731

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 138/586 (23%), Positives = 233/586 (39%), Gaps = 51/586 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L E +IN+IAAGEII RP+ A+KEL+ENSLDA ++ +   +  GG    QI DNG 
Sbjct: 9   PIRRLDESLINRIAAGEIIHRPASALKELLENSLDAGATSIRVTVKDGGMKLLQIQDNGC 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+S   D S I T+GFRGEAL S+  VSHL+++S+   +N   
Sbjct: 69  GIRITDLPILAERFTTSKLSSYSDLSRIQTYGFRGEALASMSHVSHLSVVSKTKTDNCAW 128

Query: 120 QIAIS--------GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +          + +  +P A N GT + + DLF+  P RL+ L+S   E   I DV
Sbjct: 129 KAHYADGNLIPAKPGQTAEPKPCAGNNGTTITIEDLFYNTPTRLSALRSASEEYARILDV 188

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNE-- 226
           + + A+  P VSF      S    ++  ++  +       I    G   +   +      
Sbjct: 189 MTKYAVHNPSVSFVCKKAGSPSPDLSTPASAASPAGTQAIIRMTYGSSIVKELIHYYYSS 248

Query: 227 -------------------------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQD 261
                                       + +   +   P ++        +FIN R V+ 
Sbjct: 249 GGDSSDAQGEQKENEDDDMDTEDDVSPKDWSFDAHFTNPNYHAKKMVFL-LFINHRLVES 307

Query: 262 KFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
             +   I   YA  +P G  P V L +++ P  VDVNVHP K  ++F N   I   I  S
Sbjct: 308 SRLKRAIEGVYATILPKGASPFVYLSIQLHPSTVDVNVHPTKREVQFLNEEEIFATIADS 367

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
           +Q+ + ++G S+ +   +    +   D                T+      + R S  D 
Sbjct: 368 VQEKLGQQGGSSRTFQVQVSPVAASDDEDEGGSGEATPIPPRTTKPIPSHFKVRTSAADR 427

Query: 382 LPSDDPTY---SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                      S       +++      G    +  +    SQ     V        E  
Sbjct: 428 TLDSMFPVVNPSLRTQLPADTQPLATAAGTQLTEYKRTIRESQCRLKSVQT-MRKEIEAA 486

Query: 439 IFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH----DEDLHRLGIKAERFGPNA 494
             +++ +            LT  +  L       ++ H    +E  ++LG++  +FG  +
Sbjct: 487 RHQQLTEIIEKHIFVGIVDLTKTLSLLQHSTRLYLVNHCSLAEELFYQLGVR--QFGDLS 544

Query: 495 IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
                 P  L       +  + I+          ++  +E ++A  
Sbjct: 545 RMKLSPPPSLRTLVKLGISAEDIEGQTTLKREDIVEKIVEILVARR 590


>gi|302844875|ref|XP_002953977.1| hypothetical protein VOLCADRAFT_94705 [Volvox carteri f.
           nagariensis]
 gi|300260789|gb|EFJ45006.1| hypothetical protein VOLCADRAFT_94705 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 21/380 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGE+I+RP+ A+KE++ENSLDA ++++  ++  GG    QITDNG G
Sbjct: 17  IRKLDENVVNKIAAGEVIQRPASALKEMLENSLDAGATQISVLVKEGGNKLLQITDNGCG 76

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++P+   RH TSK+   +D   I T GFRGEAL SI  VSH+T+ +       G +
Sbjct: 77  VRKEDLPILCHRHTTSKLREYEDLETISTLGFRGEALCSISFVSHMTVTTMARGAQYGYR 136

Query: 121 IAI--SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +    S  +    RPVA  PGT + V DLF+ +P R   LKS   E  LI DV+ R A+ 
Sbjct: 137 VTYKDSEMEPPGPRPVASVPGTTITVEDLFYNVPTRRKALKSANEEYGLILDVVGRYAVY 196

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----------- 227
              V+F+      +R  ++  +T G+  + +  V G +     + L              
Sbjct: 197 STGVAFSCRRQGDSRPDISTTAT-GSRVDAVRSVYGVEVARELLSLKVAVGSGTGPDVPV 255

Query: 228 --SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
                ++++G      ++ G      +FINGR V+   +   +   Y   +P    P + 
Sbjct: 256 DGPMGLSVEGLISGANYSTGKKTVLVLFINGRCVECSPLRRALEGLYGALLPKASRPWIF 315

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMI 342
           L + + PRQV+VN+HP K  + F +   +   I Q+++  +   N+     +S   +  +
Sbjct: 316 LDVRLPPRQVEVNMHPTKREVGFMHQAEVIEAIRQAVEAKLLASNESRTFATSATLQTQL 375

Query: 343 SSFHQDNAPKTHLPKYATSL 362
                    +  LP    S+
Sbjct: 376 PFASLPLTQRQSLPAPGRSI 395


>gi|255561542|ref|XP_002521781.1| DNA mismatch repair protein mlh1, putative [Ricinus communis]
 gi|223538994|gb|EEF40591.1| DNA mismatch repair protein mlh1, putative [Ricinus communis]
          Length = 735

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 182/370 (49%), Gaps = 7/370 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E ++N+IAAGE+I+RP  A+KEL+ENSLDA S+ +  V+  GG    Q++D+G 
Sbjct: 22  KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAHSTSINVVVKDGGLKLIQVSDDGH 81

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK+S  +D  +I + GFRGEAL S+  V+H+T+ +       G 
Sbjct: 82  GIRYEDLPILCERHTTSKLSTYEDLQSIKSMGFRGEALASMTYVAHVTVTTITEGQLHGY 141

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     +    +  A   GT + V +LF+ + AR   L++   + + + D++ R +I 
Sbjct: 142 RVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYSKVVDLLSRFSIH 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITLQGY 236
           +  VSF+     + R  ++  +T+    + I  V G     N   +E +++++   + G+
Sbjct: 202 HTNVSFSCRKHGAARADIHSVATSSRL-DSIRTVYGASAARNLMKIEASDEASNFDMNGF 260

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                +         +FIN R V+   +   +   Y  T+P    P V + + + P  VD
Sbjct: 261 ISNSNY-VAKKTTMVLFINDRLVECTTLKRALEIVYTATLPKASKPFVYMSVVLPPEHVD 319

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  +   N   I   I  +++  +     + S        S        K    
Sbjct: 320 VNVHPTKREVSLLNQETIVEKIQLAVESKLRSSNEAKSFQEQTIDPSPSCPLGTGKDLKV 379

Query: 357 KYATSLTNTQ 366
             +++ +  Q
Sbjct: 380 DPSSNGSKAQ 389


>gi|115442355|ref|NP_001045457.1| Os01g0958900 [Oryza sativa Japonica Group]
 gi|57900283|dbj|BAD87116.1| putative MutL homolog 1 protein [Oryza sativa Japonica Group]
 gi|113534988|dbj|BAF07371.1| Os01g0958900 [Oryza sativa Japonica Group]
 gi|215737085|dbj|BAG96014.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 724

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 184/380 (48%), Gaps = 10/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E ++N+IAAGE+I+RPS A+KELIENSLDA +S V   +  GG    Q++D+G 
Sbjct: 17  RIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGH 76

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +RH TSK+S  +D   I + GFRGEAL S+  V H+T+ +       G 
Sbjct: 77  GIRFEDLAILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGY 136

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     + +  +P A   GT V V +LF+ + AR   L++   +   I D I R A+ 
Sbjct: 137 RVSYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSNDDYPKIVDFISRFAVH 196

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-----ITL 233
           +  V+F+     +NR  ++  ST+    + I  V G   + + +E+     +       +
Sbjct: 197 HINVTFSCRKHGANRADVHSASTSSRL-DAIRSVYGASVVRDLIEIKVSYEDAADSIFKM 255

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY     +         +FIN R V    +   I   Y+ T+P    P + + + +   
Sbjct: 256 DGYISNANYVAKKITMI-LFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIHLPSE 314

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVN+HP K  +   N   I   I  +I++ +     +         +S   Q N  K 
Sbjct: 315 HVDVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQALNLSGIAQANPQKD 374

Query: 354 HLPKYATSLTNTQEKLFLQE 373
            + + +       +K+ + +
Sbjct: 375 KVSEASMGSGTKSQKIPVSQ 394


>gi|13430732|gb|AAK25988.1|AF360278_1 putative MLH1 protein [Arabidopsis thaliana]
          Length = 727

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 179/375 (47%), Gaps = 12/375 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L E ++N+IAAGE+I+RP  A+KEL+ENSLDA+SS +  V+  GG    Q++D+G 
Sbjct: 18  KIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSDDGH 77

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK++  +D  ++ + GFRGEAL S+  V+H+T+ +       G 
Sbjct: 78  GIRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQIHGY 137

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     +    +  A   GT + V +LF+ + AR   L++   +   I D++ RMAI 
Sbjct: 138 RVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYGKIVDLLSRMAIH 197

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNEKSNEITL 233
           Y  VSF+     + +  ++   +     + I  V G     N +       +       +
Sbjct: 198 YNNVSFSCRKHGAVKADVHSVVSPSRL-DSIRSVYGVSVAKNLMKVEVSSCDSSGCTFDM 256

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +G+     +         +FIN R V+   +   I   YA T+P    P V + + +   
Sbjct: 257 EGFISNSNY-VAKKTILVLFINDRLVECSALKRAIEIVYAATLPKASKPFVYMSINLPRE 315

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VD+N+HP K  +   N  II   I   ++  +     + +    ++ +         + 
Sbjct: 316 HVDINIHPTKKEVSLLNQEIIIEMIQSEVEVKLR--NANDTRTFQEQKVEYIQSTLTSQK 373

Query: 354 HLPKYATSLTNTQEK 368
                +   +  + +
Sbjct: 374 SDSPVSQKPSGQKTQ 388


>gi|30680985|ref|NP_567345.2| MLH1 (MUTL-HOMOLOGUE 1); protein binding, bridging [Arabidopsis
           thaliana]
 gi|3893081|emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana]
 gi|7267557|emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana]
 gi|332657326|gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana]
          Length = 737

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 179/375 (47%), Gaps = 12/375 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L E ++N+IAAGE+I+RP  A+KEL+ENSLDA+SS +  V+  GG    Q++D+G 
Sbjct: 28  KIQRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADSSSISVVVKDGGLKLIQVSDDGH 87

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK++  +D  ++ + GFRGEAL S+  V+H+T+ +       G 
Sbjct: 88  GIRREDLPILCERHTTSKLTKFEDLFSLSSMGFRGEALASMTYVAHVTVTTITKGQIHGY 147

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     +    +  A   GT + V +LF+ + AR   L++   +   I D++ RMAI 
Sbjct: 148 RVSYRDGVMEHEPKACAAVKGTQIMVENLFYNMIARRKTLQNSADDYGKIVDLLSRMAIH 207

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNEKSNEITL 233
           Y  VSF+     + +  ++   +     + I  V G     N +       +       +
Sbjct: 208 YNNVSFSCRKHGAVKADVHSVVSPSRL-DSIRSVYGVSVAKNLMKVEVSSCDSSGCTFDM 266

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +G+     +         +FIN R V+   +   I   YA T+P    P V + + +   
Sbjct: 267 EGFISNSNY-VAKKTILVLFINDRLVECSALKRAIEIVYAATLPKASKPFVYMSINLPRE 325

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VD+N+HP K  +   N  II   I   ++  +     + +    ++ +         + 
Sbjct: 326 HVDINIHPTKKEVSLLNQEIIIEMIQSEVEVKLR--NANDTRTFQEQKVEYIQSTLTSQK 383

Query: 354 HLPKYATSLTNTQEK 368
                +   +  + +
Sbjct: 384 SDSPVSQKPSGQKTQ 398


>gi|195431337|ref|XP_002063699.1| GK15817 [Drosophila willistoni]
 gi|194159784|gb|EDW74685.1| GK15817 [Drosophila willistoni]
          Length = 601

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 133/571 (23%), Positives = 246/571 (43%), Gaps = 68/571 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS+++  +  GG    QI DNG G
Sbjct: 10  IKKLDEVVVNRIAAGEIIQRPANALKELLENSLDAKSSQIQVQVKAGGLKLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D + I TFGFRGEAL SI  V+H+ + ++  Q   G +
Sbjct: 70  IRKDDLGIVCERFTTSKLCKFEDLTQIATFGFRGEALASISHVAHMQIQTKTKQEPCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +  K+  + +P A N GTI+ + DLF+++P R   LKS   E   ++DV+ + A+  
Sbjct: 130 ASYADGKLQGAPKPCAGNQGTIITIEDLFYSMPQRRQALKSPAEEFQKLSDVVSKYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V FT       +  +     N +  E I  + G       +EL  K +    Q    +
Sbjct: 190 PHVGFTLKKQGEAQPALKT-PVNSSRKENIRIIYGSAISKELLELTYKDDTFKFQMDALL 248

Query: 240 PTFNRGNANQ-FYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + S++   Y+  +P G++P + + L++ P+ +DVN
Sbjct: 249 TQVNYSAKKGVMLLFINQRLVESPALKSSLDGIYSTYLPRGQHPFIYMSLQLPPQNLDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFII----------QSIQKAINKKGISTSSVLSKKMISS---- 344
           VHP K  + F     I   I            + +    +  +  +S +  +  +S    
Sbjct: 309 VHPTKHEVHFLYQDEIIERIKEQVEAQLLGSNATRTFYKQLKLPGASDVLDETQASDKTR 368

Query: 345 -----FHQDNAPKTHLPKYATSLTNTQEKLF---------------LQENRLSTNDLLPS 384
                F + ++ +  L K+   L  +   L                 Q+          S
Sbjct: 369 LYPKDFIRTDSQEQKLDKFLAPLKQSDSGLSSASANSTSSGSEVNASQDESFRAVAARKS 428

Query: 385 DDPTYSEDNDPVEESEATHYQLGI-------ACAQIHQNYIISQTTDGLVIVDQHAAHER 437
            +   S   D  ++ E +                 + ++  + Q    L + +     E 
Sbjct: 429 KEVRLSSVLDMQQKVERSCNVRLRSILKQLVYVGCVDESRALFQHETQLYMCNTRLFSEE 488

Query: 438 LIFEKMRQDFNSTKITSQTLLTP---------------------EIIDLLEGECALIMEH 476
           L ++++  +F +          P                     + ++L     A++ + 
Sbjct: 489 LFYQRLVYEFQNCPEICLQPALPLQDLLVIAMDSEAAGWTPEDGDKLELASSAAAILEQK 548

Query: 477 DEDLHR-LGIKAERFGPNAIAIREIPAILSK 506
              +     ++  +    ++ +  +PA+L+K
Sbjct: 549 APIMREYFSLRISQNDNGSVVLESLPALLAK 579


>gi|225849567|ref|YP_002729801.1| DNA mismatch repair protein MutL [Persephonella marina EX-H1]
 gi|259511147|sp|C0QSY6|MUTL_PERMH RecName: Full=DNA mismatch repair protein mutL
 gi|225645029|gb|ACO03215.1| DNA mismatch repair protein MutL [Persephonella marina EX-H1]
          Length = 520

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 170/324 (52%), Gaps = 17/324 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ LSE +I +IAAGE++ERP+  +KELIEN++DA S R++  I  GGK   Q+ DNG 
Sbjct: 3   RIKPLSEDLIRKIAAGEVVERPANVLKELIENAIDAGSDRIDIFIEKGGKRLIQVVDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++   V+R+ TSKIS  DD  +I ++GFRGEAL SI +VS  +++SRP   + G 
Sbjct: 63  GIHPDDMLDCVKRYTTSKISSEDDLYSISSYGFRGEALYSISSVSKFSIVSRPEDLSVGK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I G    S        GT V V+D+FF  P R  FLKSE+ E           A+  
Sbjct: 123 ELYIEGGVFRSFTETGAPVGTKVRVKDIFFNTPVRKKFLKSERTEFVHCLKTFINYAVVN 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             + F           +       +  +RI+ +   +     +EL+       + GY   
Sbjct: 183 TDIHFRLYHNGRELMNLPP----SDLKKRITYIYP-ELSGRLLELDYTDETGRIYGYIST 237

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +     +  V++N R V+++ +   I++  +E          VL +E+ P  VD NV
Sbjct: 238 ---DERFKKEGIVYVNKRPVKNRELRKIIKSLISEK-------FYVLFIELPPYFVDHNV 287

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQ 323
           HPAK  ++F+N T ++N + + ++
Sbjct: 288 HPAKIEVKFKNDTAVKNLVREGLK 311



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 12/187 (6%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID-LLEG 468
             Q+   +I+      + ++DQH  HER+ +E + +D        + +L   I   + E 
Sbjct: 343 LGQVENTFIVVYYDGDIYLIDQHVVHERINYEILMEDLREDGFIKRKILNRNITHSISEL 402

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ-LLRDIIDEIIDSSTTY 527
           E ALI +    L R G   +  G N + I+EIP  +S+        R ++DE  ++    
Sbjct: 403 EKALIEDKKGTLERSGFSFDIDGYN-LVIKEIPVFVSEDQALDIFFRILMDEDAET---- 457

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
                ++ ++  +AC  S++SG  +   +   +L+   +  + + C HGRP + K+ + D
Sbjct: 458 -----VDYVIGEIACKLSVKSGDILSDEKAKLILKRWFETDSPNLCPHGRPVYYKVSIDD 512

Query: 588 IEKLFGR 594
           ++K  GR
Sbjct: 513 VKKAIGR 519


>gi|328771889|gb|EGF81928.1| hypothetical protein BATDEDRAFT_33018 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 664

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 172/343 (50%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L E  +N+IAAGEII RP+ A+KEL+ENSLDA S+ ++ ++  GG    QI DNG 
Sbjct: 9   RIKRLDEVTVNRIAAGEIIHRPANALKELLENSLDAGSTAIQIILKEGGLKLLQIQDNGH 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+S  +D + I T+GFRGEAL SI  ++HL++ +R   +    
Sbjct: 69  GINKDDLSIVCERFTTSKLSKYEDLNKIATYGFRGEALASISHIAHLSITTRTVDSFCSW 128

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P A N GT++   DLF  +P R   L +   E N + +V
Sbjct: 129 RACYSDGKLVSAKPGGSVDPKPCAGNVGTLISAEDLFHNVPIRRKSLNNTNEEYNRVLEV 188

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SN 229
           ++R AI    VSFT     +    +   S+     + I  V G       +E        
Sbjct: 189 VQRYAIHNNNVSFTCKKQNAQISDLQTPSSASKL-DNIRTVFGNTVARELLEFTVDSARW 247

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
           E    GY     FN        +FIN R V++  I  ++   Y++ +P   +P   + LE
Sbjct: 248 EFKASGYISNANFNM-KKFHLLLFINHRLVENHNIKKSLEALYSKYLPKRTHPFAYISLE 306

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I P+ +DVNVHP K  ++F +   I   +  +    + +   S
Sbjct: 307 IKPQNLDVNVHPTKRIVQFLHEDSIIEVLCDAADSLLAEANNS 349


>gi|194757576|ref|XP_001961040.1| GF13669 [Drosophila ananassae]
 gi|190622338|gb|EDV37862.1| GF13669 [Drosophila ananassae]
          Length = 663

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 220/495 (44%), Gaps = 42/495 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG    QI DNG G
Sbjct: 9   IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAQSSHIQVQVKQGGLKLLQIQDNGTG 68

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+S  +D ++I TFGFRGEAL SI  V+HL++ ++  +   G +
Sbjct: 69  IRKDDLGIVCERFTTSKLSKFEDLTHIATFGFRGEALASISHVAHLSIQTKTAKERCGYK 128

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+    +P A N GTI+ + DLF+ +P R   L+S   E   +++V+ R A+  
Sbjct: 129 ATYADGKLQGQPKPCAGNQGTIISIEDLFYNMPQRRQALRSPADEFQKLSEVLARYAVHN 188

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGYT 237
           P+V FT       +  +     + +  E I  + G       +E +   +  +   +   
Sbjct: 189 PRVGFTLRKQGEAQPSIRT-PIDSSRSENIRIIYGAAISKELLEFSHRDEVFKFEAECLV 247

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++    +Q  +FIN R V+   + + + + Y+  +P G++P + + L +  + VDV
Sbjct: 248 TQVNYS-AKKSQMLLFINNRLVESTSLKAALESVYSTYLPRGQHPFIYMSLTLPAQNVDV 306

Query: 298 NVHPAKSYIRFRNPTIIRNFII----------QSIQKAINKKGISTSSVLSKKMISSFHQ 347
           NVHP K  + F     I   +            S +    +  +  +  L +       Q
Sbjct: 307 NVHPTKHEVHFLYQDEIVERLKEQLEARLLGSNSTRTFYKQLRLPGAPDLDETQPGDKTQ 366

Query: 348 DNAPK---------THLPKYATSLTN---------TQEKLFLQENRLSTNDLLPSDDPTY 389
              PK           L K+ TSL           ++    L E          S +   
Sbjct: 367 RVYPKELVRTDASEQKLEKFFTSLVKSDSGVSSTSSEGAPPLPEESFRQTAARKSREVRL 426

Query: 390 SEDNDPVEESEATHYQLGIACAQ-------IHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
           S   D  +  E           +       + +   + Q    L + +  A  E L +++
Sbjct: 427 SSVLDMRQRVERNCSVQLRGIIKNLVYVGCVDERRALFQYETHLYLCNTRAFSEELFYQR 486

Query: 443 MRQDFNSTKITSQTL 457
           +  +F +    S   
Sbjct: 487 LLYEFQNCPEISLNP 501


>gi|158300415|ref|XP_320342.4| AGAP012192-PA [Anopheles gambiae str. PEST]
 gi|157013148|gb|EAA00135.4| AGAP012192-PA [Anopheles gambiae str. PEST]
          Length = 674

 Score =  296 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 112/337 (33%), Positives = 174/337 (51%), Gaps = 4/337 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KE+IENSLDA+++ +   +  GG    QI DNG G
Sbjct: 6   IRKLDEVVVNRIAAGEIIQRPANALKEMIENSLDAKATSITITVKAGGLRSLQIQDNGTG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   DD S+I T+GFRGEAL SI  V+HLT++++        +
Sbjct: 66  IRREDLGIVCERFTTSKLQSFDDLSSISTYGFRGEALASISHVAHLTIVTKTKHEKCAYK 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                 K+   ++P+A N GT + V +LF+ +P R   LK+   E   I+DV+ + A+  
Sbjct: 126 ACYEDGKLKGDIKPIAGNQGTQITVDELFYNVPMRKQALKTPNEEFQRISDVVSKYAVHN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P   F                T            G       +EL ++  ++T++GY   
Sbjct: 186 PHACFILKKFGETATIRTQAKTTVAHNIGAIYGAGIGKALVPIELRDEVMQLTVEGYVTN 245

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             F+        +FIN R V+   +   I   YA  +P G  P V L LE++P+ VDVNV
Sbjct: 246 VNFS-LKKGISLMFINHRAVECSALKKAIDAIYAVYLPKGSAPFVYLSLELNPQNVDVNV 304

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           HP K  + F +   I   +   +++A+     + S  
Sbjct: 305 HPTKHEVHFLHEEEIVEKVKLLVERALLGGNAARSYT 341


>gi|156540257|ref|XP_001602327.1| PREDICTED: similar to LOC100036779 protein [Nasonia vitripennis]
          Length = 708

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 194/427 (45%), Gaps = 21/427 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+KL E ++N IAAGEII+RP+ A+KELIENSLDA+++ ++  +  GG    Q+ DNG 
Sbjct: 6   SIKKLDETVVNLIAAGEIIQRPANALKELIENSLDAKATNIQVFVREGGMKLLQVVDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  + + +  +R  TSK+   DD  +I TFGFRGEAL SI  VS+ T+ ++        
Sbjct: 66  GIRKDNLDIVCERFTTSKLQTFDDLKSISTFGFRGEALASISHVSYFTITTKTKAEKCAY 125

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + S  K+     P A N GTI+ V +LF+ +  R   L S   E + I +V+ R A+ 
Sbjct: 126 KASYSRGKLKEPPTPCAGNQGTIITVENLFYNVSIRKKALNSSSEELSKILEVVTRYAVH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL--NEKSNEITLQGY 236
            P V FT          +     +      I  + G       +E+  ++  ++  L   
Sbjct: 186 NPSVGFTLKKYGEAV-NLIRTPCSSTNISNIRLLFGTAIAKELLEVKLDDAKHKFKLHAL 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                +  G      +FIN R V    +  T++  Y+  +P   YP   + LEI+P+ VD
Sbjct: 245 VTNANYISGKRMTLLLFINHRLVHSSAMKRTLQDMYSVYLPKKAYPWCYISLEIEPQNVD 304

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAI---------------NKKGISTSSVLSKKM 341
           VNVHP K+ +RF +   I   I   + + +                    S      KK 
Sbjct: 305 VNVHPTKNEVRFLHEEAIIKKIKILLNEKLQYEFPQDGFTEKALDKSFPCSQEQADKKKT 364

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
              F +D    ++  +       T  K  L+      N+ L  D     +D DP++E+ +
Sbjct: 365 KKIFAKDMIRTSNSDQKLEKFNFTVNKNDLKSTEPEKNEKLDIDTMVLLKDKDPLDEASS 424

Query: 402 THYQLGI 408
           +      
Sbjct: 425 SSKNPDY 431


>gi|303278460|ref|XP_003058523.1| DNA mismatch repair enzyme [Micromonas pusilla CCMP1545]
 gi|226459683|gb|EEH56978.1| DNA mismatch repair enzyme [Micromonas pusilla CCMP1545]
          Length = 736

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 137/655 (20%), Positives = 247/655 (37%), Gaps = 79/655 (12%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+LS ++ +++ +  +I      ++E + NS+DA +++V  V+  G      ++DNG GM
Sbjct: 25  RQLSPELQSKLRSCTVISSIGQLVEECVCNSIDAGATKVSVVVDTGSTLAITVSDNGRGM 84

Query: 64  TSEEIPMAVQRHCTSKISD--DF-SNIHTFGFRGEALPSIGAVSHLTLMSRPPQN----- 115
           +  ++    +R+ TSK  D  D   NI T GFRGEAL S+  +S L + SR   +     
Sbjct: 85  SVRDVRDVGRRYHTSKCHDLQDLSDNIKTLGFRGEALASMSDLSVLEVTSRAAGSFETYT 144

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRR 174
               +   +       R      GT++  RDLF   P R N   ++ Q +       + R
Sbjct: 145 RISTKAGTATLACGPARYQLPKAGTVITARDLFHNHPVRRNMIRRNLQKQLEDARARVYR 204

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+ +P V  + +     R ++       +    +S   G    ++ V +         +
Sbjct: 205 LALIHPAVGVSLTEFNGRRKELMRLPPGRSLLSALSDAFGSALASSLVPVGLTVGPFRAR 264

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAE------------TIPLGRYP 282
           GY         +    ++++N R V+   +   ++ A+              T P G +P
Sbjct: 265 GYVTPSNRALNSPEVQFLYVNRRFVKKTPLHKAVKDAFNAARDPYESRRGPVTAPPGGHP 324

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI--------NKKGISTS 334
             VL L+  P + DV     K+ I FR+  +    + +++++A             +   
Sbjct: 325 GYVLCLDCSPSEYDVTYDVEKTLIEFRDWEMPLRVLNEALREAWPPIKEKEKEPDPLEPP 384

Query: 335 SVLSKKMISSFHQDNAPKTHLPK-------------------YATSLTNTQEKLFLQENR 375
               +  ++         T  P                      +  TN  +  F+ +  
Sbjct: 385 PQTREPPVTPPPAVAVGGTETPSKDANGNCICCPPLARRRLGVPSMGTNDDDDAFICQTI 444

Query: 376 LSTNDLLPSDDPTY-----------SEDNDPVEESEATHYQLG---------------IA 409
               D  P                 +   +PV                            
Sbjct: 445 EPFEDAPPPQQQQQPQPPNDVRSLLATWKNPVPAEMYQPSMPSSTANAVVTRESLENATV 504

Query: 410 CAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTK--ITSQTLLTPEIIDLL 466
             Q  + +++ ++  G L  +DQHA+ ER+  E +R+D  +    +TS+ L  P   +L 
Sbjct: 505 LTQWGKKFVLIRSASGDLFALDQHASDERVRLENLRRDLTARGDAVTSKVLPHPVPCELS 564

Query: 467 EGECALIMEHDEDLHRLGIKAE--RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
             E A +  +    HR G + E    G   +++   PAI         L + + EI    
Sbjct: 565 AAELATLRANASSAHRWGWRWEDDDAGGGGVSLTGTPAIEGTTLGGDALGEYLREIAAVG 624

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
            T      +  +LA+ AC G+I  G  ++  E   LL E+ K     QC HGRPT
Sbjct: 625 LTSAPPPALHRLLASKACRGAIMFGDMLRRRECVALLEELRKTQLPLQCAHGRPT 679


>gi|115376219|ref|ZP_01463461.1| DNA mismatch repair protein MutL [Stigmatella aurantiaca DW4/3-1]
 gi|115366792|gb|EAU65785.1| DNA mismatch repair protein MutL [Stigmatella aurantiaca DW4/3-1]
          Length = 539

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 134/541 (24%), Positives = 237/541 (43%), Gaps = 16/541 (2%)

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  E+  + ++RH TSK+   DD  N+ + GFRGEALP+I AVS  TL +  P+   G +
Sbjct: 1   MGREDAVLCLERHATSKLRELDDLENLVSKGFRGEALPAIAAVSRFTLHTAEPEAEVGTR 60

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G     V       GT++ V DLF+  PARL F++  + E   + + + R+A+A+P
Sbjct: 61  VTVEGGAGLHVEEAPPRVGTVMTVEDLFYNTPARLKFMRRGETELKHVEEAVIRIALAHP 120

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +VSF         +         +  ERI+  +G D   +   + E+   +++ G+   P
Sbjct: 121 EVSFLVEHGGLPLFTSPACP--EDPTERIAAALGTDVHPHLFSVEERRLGLSITGHIASP 178

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            +    A   Y F+N R V+D+ ++  I+  Y E +P GR P+VVL ++++P  VDVNVH
Sbjct: 179 EYTLPTARGIYTFVNHRYVRDRGLIGAIQRGYQEYLPSGRQPLVVLFIDVEPHAVDVNVH 238

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           P K  +RF +   + + ++ +I + +        T          + H   A +  L + 
Sbjct: 239 PQKMEVRFADSRGVYDAVLAAIVRTLRAAPWLGPTPPEGGDPRRQAAHYAQAVERFLTRA 298

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP-------VEESEATHYQLGIACA 411
             +       L    +  ++  L+P+                   E     ++       
Sbjct: 299 QEATWGAPLPLPSAADAPASLSLVPAAPVPMGRAPAFGQALPQLNEAPPPGYFAALRPMG 358

Query: 412 QIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            +   + + +   G LV++D HAA ER+      +     K T    L    ++L     
Sbjct: 359 VLGGRFQVCEGPGGTLVVLDPHAALERVRLMDFHRLLEEGK-TPPPSLFGTTVELPVPAA 417

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             +M   E L  LGI  E FG  + A++ +P  L   +   LL  +   +  + T     
Sbjct: 418 RALMGGRESLALLGIDVEPFGGTSFALKAVPPGLEGADPRALLEALSHALPPAGTPPDAV 477

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              E  L  MAC+ +  +  K+   ++  LL E++       C HG    +++ L ++E+
Sbjct: 478 GLAEA-LRVMACHAAQTASDKLTDAQLRALLGELDAADFHPTCRHGTVVVLEMPLLELER 536

Query: 591 L 591
            
Sbjct: 537 R 537


>gi|260948032|ref|XP_002618313.1| hypothetical protein CLUG_01772 [Clavispora lusitaniae ATCC 42720]
 gi|238848185|gb|EEQ37649.1| hypothetical protein CLUG_01772 [Clavispora lusitaniae ATCC 42720]
          Length = 711

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 141/593 (23%), Positives = 240/593 (40%), Gaps = 65/593 (10%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I+KL E +IN+IAAGEII +P+ A+KEL+ENS+DA S+ ++ ++  GG    QITDN
Sbjct: 1   MPTIKKLDENVINRIAAGEIIVQPANALKELLENSVDAGSTMIDVLVKDGGLKLLQITDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +++ +  +R  TSKIS  DD ++I T+GFRGEAL SI  +S L+++S+   +  
Sbjct: 61  GSGIARDDMNLLCERFATSKISTFDDLTSISTYGFRGEALASISHISRLSVVSKTKDSQL 120

Query: 118 GAQIAISGEKISS-------------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE 164
             +      K+++              +P+A   GT   V DLF+ +P+RL  +KS+  E
Sbjct: 121 AYKAYYVNGKLATAKFKADPTGENSAPKPIAGKDGTQFTVEDLFYNVPSRLRTMKSKSEE 180

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
              I DVI R AI    V F       +   ++ +       ERI  V G    ++ +E 
Sbjct: 181 WARILDVIGRYAIHTENVGFACKKYGESFPSISTRP-QAPLKERIRTVFGTSVASDLIEF 239

Query: 225 NEKSNEI---TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
           + K  E     L+G     ++          FIN R V    +   I + +   +P G  
Sbjct: 240 DIKLEEYGLKRLKGAVTGFSYINKRRMNPVFFINNRLVSCDPLKRGISSIFQVFLPKGNS 299

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS------- 334
           P V L ++I  + +DVNVHP K  +RF     I   + Q +   ++ +  S S       
Sbjct: 300 PFVYLSMDIATQNLDVNVHPTKREVRFLYEDEIIELVCQHLHDVLSTRDTSRSFKQSTLK 359

Query: 335 ---SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                 +   +SS  +    +  L +   S       +      +  N  L  D  + S+
Sbjct: 360 RNTDTGNMDDVSSAVKKYRQENKLVRVDASQPKISAFVRHDFGEIIKNSAL-DDTQSESQ 418

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTT----DGLVIVDQHAAHERLIFEKMRQDF 447
                E  E   +  G +     Q     Q        +     +   + ++ + + +  
Sbjct: 419 HIKSGEPEEEDTFIEGESIINGTQIEKSMQNQTLPVSHIQFSSTNRQRQNIVLDSLSELK 478

Query: 448 NSTKITSQTLLTPEIIDL--------LEGECALIMEHDEDLHRLG---------IKAERF 490
              + +    LT    +L         +  C    +    L   G         +    F
Sbjct: 479 QEIEDSVSRPLTNVFNNLVYVGIVDSEKRLCCFQYDVKLFLCDYGAMLCEYYYQVALSEF 538

Query: 491 GPNAIAIREIPAILSKK--NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
           G              +   + P  L +I+  + +       + ++   +  MA
Sbjct: 539 GN-----------FGEIVFDEPVTLEEILAPLYEQRDDLEEKTQVIEKIMAMA 580


>gi|328780324|ref|XP_001120100.2| PREDICTED: DNA mismatch repair protein Mlh1 [Apis mellifera]
          Length = 891

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 115/398 (28%), Positives = 189/398 (47%), Gaps = 5/398 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL E ++N+IAAGE+I+RP  A+KELIENSLDA+++ ++ +   GG    QI DNG 
Sbjct: 6   KIKKLDEVVVNRIAAGEVIQRPENALKELIENSLDAKANNIQIIAKEGGLKLLQIQDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+   +D   I TFGFRGEAL SI  +S LT+ ++        
Sbjct: 66  GIRKEDMEIVCERFTTSKLQTFEDLQTISTFGFRGEALASISHISLLTITTKTADEKCAY 125

Query: 120 QIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +    K+ +  +  A N GT + + +LF+ +  R   L +   E N ITDV+ + AI 
Sbjct: 126 KASYVDGKLKAPLKSCAGNQGTTIVIENLFYNVATRRKALSNPNEEFNRITDVVTKYAIH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
                F          ++     N      I  + G       +E+  K +    + +  
Sbjct: 186 NADTGFVLKKHGEIAPQIRT-PHNSTKMNNIRILYGNPVFRELLEVEFKDDTYKFKMHAL 244

Query: 239 IPTFNRGNANQFY-VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           I   N  N    + +FIN R V+   I   +   Y+  +P   +P   + LEIDPR +DV
Sbjct: 245 ITNANYTNKKMIFLLFINNRLVKSSSIQKMLEELYSFYLPKKTHPWCYISLEIDPRNIDV 304

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  ++F +   I   +  ++ + ++    S +  L  ++  +       K  LP+
Sbjct: 305 NVHPTKHEVKFLHENSIIERMKLALDEKLSANSASRTFYLKTRLPKADITKEVLKEILPE 364

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
           Y    +N  +K+  QE   +       D   +    + 
Sbjct: 365 YEEDNSNKIKKIRPQEMIRTDASDQKLDKFNFMIHKEM 402


>gi|222479064|ref|YP_002565301.1| DNA mismatch repair protein MutL [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451966|gb|ACM56231.1| DNA mismatch repair protein MutL [Halorubrum lacusprofundi ATCC
           49239]
          Length = 767

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 115/351 (32%), Positives = 180/351 (51%), Gaps = 13/351 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E+ + +IAAGE++ERP+  +KELIENSLDA ++RV   +  GG    +I D+G G
Sbjct: 6   IERLDERTVQRIAAGEVVERPASVVKELIENSLDAGATRVAVSVEAGGTEGIRIRDDGVG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           + ++++  AV  H TSKI   +D  + + T GFRGEAL ++GAVS LT+ SRPP  + G+
Sbjct: 66  IPADQLEAAVAEHATSKIGKIEDLDHGVGTLGFRGEALYTVGAVSRLTVRSRPPGADAGS 125

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +I + G  +  VRP     GT VEV  LF+  PAR  FLK    E + +  V+   A+A 
Sbjct: 126 EITVEGGDVGDVRPAGCPEGTTVEVDGLFYNTPARKKFLKRTATEFDRVNAVVTGYALAN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS-------NEIT 232
           P V+ +        +       NG+    +  V G +  +  V++  +           +
Sbjct: 186 PGVAVSLEHDGRETF---ATEGNGDLRSAVLAVYGREVADAMVDMEWEPGNSDTDSPVHS 242

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G    P   R +      ++NGR V    +   +  AY   +   RYP  VL +E+ P
Sbjct: 243 VTGLVSHPETTRSSREYLATYVNGRYVTAGALRDAVLDAYGGQLAPDRYPFAVLFVEVPP 302

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
             VDVNVHP K  +RF     +R  + ++++ A+   G+  S+    +   
Sbjct: 303 GDVDVNVHPRKLEVRFDEEPAVRAAVEEAVEAALLDHGLIRSTAPRGQSAP 353



 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 10/251 (3%)

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
           ++D+      P      +  + +   Q    +T       +PT +       E       
Sbjct: 514 NEDSGATDTSPDPTADASGGRREPTAQPRSTATAQRTLDGEPTSA-------ERTYDSLP 566

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                 Q+H+ Y+I++  DGLV++DQHAA ER+ +E+++  F      +Q L  P  I+L
Sbjct: 567 PLRVLGQLHETYVIAEAPDGLVLIDQHAADERVNYERLQTAFADGA-DAQALAEPVRIEL 625

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII--DS 523
              E AL  E  +DL  +G +AER     + +  +PA+      P+LLRD++  ++   +
Sbjct: 626 TAREAALFEEFVDDLAGVGFRAERADEREVVVESVPAVFDAALDPELLRDVLSALVGDAT 685

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +    + D ++ +LA +ACY S+     +    +  LL  ++   N   C HGRP  I+L
Sbjct: 686 AGDEPVTDVVDELLADLACYPSVTGNTSLTEGSVVDLLDRLDDCENPYACPHGRPVVIRL 745

Query: 584 KLSDIEKLFGR 594
              +I   F R
Sbjct: 746 NREEIGSRFER 756


>gi|307176631|gb|EFN66099.1| DNA mismatch repair protein Mlh1 [Camponotus floridanus]
          Length = 868

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/406 (27%), Positives = 191/406 (47%), Gaps = 7/406 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL E ++N+IAAGEII+RP+ A+KELIENSLDA+++ ++     GG    QI DNG 
Sbjct: 6   KIKKLDEIVVNKIAAGEIIQRPANALKELIENSLDAKATNIQITTKEGGLKLLQIQDNGT 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+   +D S + TFGFRGEAL SI  ++ LT+ ++        
Sbjct: 66  GIRKEDMDIVCERFTTSKLQKFEDLSALTTFGFRGEALASISHIALLTITTKTADEKCAY 125

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + +    K+     P A N GTI+ + +LF+ +  R   L +   E N IT+++ + A+ 
Sbjct: 126 KASYINSKLKAPPAPCAGNQGTIITIENLFYNVATRRKALSNPSEEFNKITEIVMKYAVH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITLQGY 236
            P V FT      +  ++     N      I  +           VELN+ + +  +Q  
Sbjct: 186 NPTVGFTLKKHGESSAQVRT-PHNSTKQSNIRILYTNSVARELLEVELNDDTYKFKMQAL 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                +         +FIN R V    I   +   Y+  +P   +P   + L+I+P+ +D
Sbjct: 245 VTNANYT-NKRMMMLLFINNRLVDSSSIRKMLEEIYSVYLPKKTHPWCYISLDINPQNID 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           VNVHP K  +RF +   I   +  ++ + +     S +  L  ++          +  LP
Sbjct: 304 VNVHPTKHEVRFLHEDTIIERMKFALDERLAGNSASRTFYLQARLPKVDISKEVLEEVLP 363

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
           +Y     +  +K+  +E   + +     D   ++       +S   
Sbjct: 364 EYNKENPDKLKKVHAKEMIRTDSSDQKLDKFNFTIHTPCKHDSNTF 409


>gi|149236814|ref|XP_001524284.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451819|gb|EDK46075.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 787

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 111/423 (26%), Positives = 197/423 (46%), Gaps = 35/423 (8%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L E +IN+IAAGEII +P+ A+KE++ENS+DA+++ +E V+  GG    QITDNG G+  
Sbjct: 18  LDESVINKIAAGEIIIQPANALKEMLENSIDAKATNIEIVVKEGGLKLLQITDNGQGIDK 77

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
            ++ +  +R  TSK++  +D   I T+GFRGEAL SI  +S L+++S+   +N   +   
Sbjct: 78  SDLHLLCERFATSKLTKFEDLELIATYGFRGEALSSISHISRLSVVSKTRDSNLAYKAYY 137

Query: 124 SGEKIS-------------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITD 170
              K+                +P+A   GT + V DLF+ +P+R   LKS+  E   I D
Sbjct: 138 INGKMCASNFKPATGNTKIEPKPIAGRDGTQITVEDLFYNLPSRFKGLKSKSDEFAKILD 197

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN- 229
           ++ R AI    V F+        +++N ++      ER+  V G +  N  +E + +   
Sbjct: 198 IVGRYAIHTGHVGFSCKKHGDPLHQLNTRANLS-IKERVRIVYGSNIANELLEFDFEPTE 256

Query: 230 ---------------EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAE 274
                           + ++G      FN     Q  +FIN R V    +   + + +  
Sbjct: 257 EEDGGNMAYKVPDLGILRVKGTLTNANFNNKKKIQPVIFINHRLVSCDPLRRAMNSVFQF 316

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST- 333
            +P G +P   + LEI P  +DVNVHP K  +RF N   I + I+  + K ++    S  
Sbjct: 317 FLPKGSHPFFYISLEIKPENLDVNVHPTKREVRFLNEDEIIDLIVARVHKILSSVDTSRK 376

Query: 334 --SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
             +  +  +  +   ++        +  ++     +      ++ ++ +   +     S+
Sbjct: 377 FKTQTIVTRRNNELEEEKLSFGDGSQSESNSQGASQGASQGASQGASQNRTWNASQNASQ 436

Query: 392 DND 394
             +
Sbjct: 437 YTN 439


>gi|195381773|ref|XP_002049619.1| GJ21695 [Drosophila virilis]
 gi|194144416|gb|EDW60812.1| GJ21695 [Drosophila virilis]
          Length = 660

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 137/566 (24%), Positives = 230/566 (40%), Gaps = 68/566 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  I  GG    +I DNG G
Sbjct: 6   IKKLDEVVVNRIAAGEIIQRPANALKELLENSLDAKSSHIQVTIKSGGLKLLEIQDNGTG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+S  +D + I TFGFRGEAL SI  V+HL++ ++      G +
Sbjct: 66  IRKDDLSIVCERFTTSKLSKFEDLTEIATFGFRGEALASISHVAHLSIQTKTASERCGYK 125

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K ++  +P A N GTI+ + DLF+T+P R   LKS   E   I+DV+ + A+  
Sbjct: 126 ATYSDGKLLAPPKPCAGNQGTIITIEDLFYTMPQRRQALKSPAEEFQKISDVLAKYAVHN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V F                   +  E I  + G       +  + K +    +    +
Sbjct: 186 PQVGFVLRKQGEQPT--LKTQARSSRAENIRAIYGAAVAKELMNFSHKDDMFKFELECQL 243

Query: 240 PTFNRGNAN-QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N         +FIN R V+   + + +   YA  +P G++P V + L + P+ +DVN
Sbjct: 244 TQVNYAVKKSTLLLFINHRLVESPALKAAVDAVYATYLPRGQHPFVYMSLMLPPQNLDVN 303

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI-------------------------------- 326
           VHP K  + F     I   I Q ++  +                                
Sbjct: 304 VHPTKHEVHFLYQEEIIERIKQQMEAKLLGSNATRSFYKQLKLPGSSQLEVTQTQDKTQR 363

Query: 327 --NKKGISTSSVLSK--KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
              KK + T S   K  K   +  + ++  +      T      E   L   R S    L
Sbjct: 364 IYEKKLVRTDSTEQKLDKFFKTLEKSDSGLSSSSGNETPAATQDESFRLTAARKSKEVRL 423

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
            S                 T  +  +    + +   + Q    L + + +A  E L +++
Sbjct: 424 TSVLNMQQRVERQCHVPLRTILKQLVYVGCVDERRALFQHETRLYMCNTYALSEELFYQR 483

Query: 443 MRQDFNSTKITSQTLLT---------------------PEIIDLLEGECALIMEHDEDLH 481
           +  +F +    S                           +  +L      ++ E    + 
Sbjct: 484 LVYEFQNCAEISVVPPLPLQQLLLIALDSRAAGWVPEDGDKTELAANAVCILQEKAPIMR 543

Query: 482 R-LGIKAERFGPNAIAIREIPAILSK 506
               ++    G     +  +PA+L +
Sbjct: 544 EYFALRISEQG----CLESLPALLGQ 565


>gi|146417610|ref|XP_001484773.1| hypothetical protein PGUG_02502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 678

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/395 (30%), Positives = 196/395 (49%), Gaps = 35/395 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I KL   +IN+IAAGEII +P+ A+KELIEN +DA S+ V+ ++  GG    QITDNG 
Sbjct: 8   TITKLDSSVINRIAAGEIIIQPANALKELIENLIDAGSTSVDILVKDGGIKLLQITDNGH 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK++  +D  +I T+GFRGEAL SI  ++ L+++++   ++   
Sbjct: 68  GIHKEDLQLLCERFATSKLAKFEDLESISTYGFRGEALASISHIARLSVVTKTKTSDLAY 127

Query: 120 QIAI----------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           +             +   ++  +P A   GT + V DLF+ +P+RL  LKS+  E + I 
Sbjct: 128 KAFYLGGKLVGQNFNTNAVAEPKPTAGTDGTQLTVEDLFYNMPSRLKSLKSKNDEYSKIL 187

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           DV+ R AI    V F+      +   ++ +       ERI  V G    N+ ++L    N
Sbjct: 188 DVVGRYAIHCQNVGFSCKKYGESHQALSTRPHVL-LKERIRIVQGSAIANDLIDLESIKN 246

Query: 230 E--------ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
           +        ++++G      +      +  +FIN R V    +  +I  AY   +P G +
Sbjct: 247 KDHAKLVGLLSVEGAITSSDYMNKKKVEPVLFINHRLVSCGPLKRSILAAYYFFLPKGNH 306

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           P + L LEI+PR VDVN+HP K  +RF N   I   +   +Q  ++    +         
Sbjct: 307 PFIYLSLEIEPRNVDVNIHPTKREVRFLNEDEIIEIVTDLVQLTLSSHDSA--------- 357

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
                +    +T L K  T  T    K + QEN+L
Sbjct: 358 -----RKIPTQTVLSKPRTQPTEPPTKKYRQENKL 387


>gi|46199261|ref|YP_004928.1| DNA mismatch repair ATPase [Thermus thermophilus HB27]
 gi|81405787|sp|Q72J22|MUTL_THET2 RecName: Full=DNA mismatch repair protein mutL
 gi|46196886|gb|AAS81301.1| DNA mismatch repair enzyme (predicted ATPase) [Thermus thermophilus
           HB27]
          Length = 545

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 135/587 (22%), Positives = 235/587 (40%), Gaps = 78/587 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++   +A GE++     A++EL+EN+LDA + RV   + GGG     + D+G G
Sbjct: 2   IRPLPPELRGLLARGEVLLTVKDAVRELLENALDAGARRVRVELWGGGLKRLVVEDDGEG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  E++P+AV+ + TSK+  D   I T GFRG+AL ++   + L + SRP     G  + 
Sbjct: 62  IPLEDLPLAVEPYATSKLQ-DLEGIRTLGFRGQALYALRQAARLRIRSRPRGQLGGGLLL 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             GE++   RPV   PGT VEV  LF      L   +  + E   + ++++R  + +P++
Sbjct: 121 AEGERVEV-RPVPAPPGTRVEVEGLF------LGEGRDPKGEVRGVLELLKRYLLHHPRL 173

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           +         R             E      G       + L   +  + +QG    P  
Sbjct: 174 ALALFAEGEARLLFP----GAGLEEAARLAFGRLLAKRLLPLAYGAGGLEVQGLVSRPEV 229

Query: 243 NRGNANQFYVFINGRTVQDKF-ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   ++ ++ +NGR V     +L  +R AY E +P G YPV VL L +      + +  
Sbjct: 230 SRTRPDRLFLAVNGRPVAFPEGLLRRVRRAYRELLPEGHYPVGVLNLFLPQEAFRLRLDA 289

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
            K              ++ S +     +    +    + +  +  +    +   P  A+ 
Sbjct: 290 RKEE------------VVLSEEAEALVEEALLALFRRENLARALPEPKPLQPLSPPTASG 337

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           L                                                AQ  ++Y++++
Sbjct: 338 LPR------------------------------------------LRFLAQFRESYLLAE 355

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L +VDQHAAHER+++E + +            L   +    E       E    L 
Sbjct: 356 AGDTLYVVDQHAAHERILYEDLLKRVAEGPKPLPRPLLVLLAPEEEALLEAGQEALAAL- 414

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
               + E FGP  + +   PA L    +  LL ++  E +      +L+     +LA +A
Sbjct: 415 ---FRWEPFGPGRVRLLMAPAFLHPYPL--LLPEVFKEAL-RGEGRSLK----ALLARLA 464

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           C  ++++G  +   +   LL  +        C HGRP  + LK  D+
Sbjct: 465 CLPAVKAGHPLGEAQGQALLDALLTCETPWACPHGRPVLLALKEEDL 511


>gi|34763430|ref|ZP_00144378.1| DNA mismatch repair protein mutL [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886899|gb|EAA24023.1| DNA mismatch repair protein mutL [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 675

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 186/336 (55%), Gaps = 15/336 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E + N IAAGE++E P+  IKELIENSLDA S  ++  +  GG     I+D+G 
Sbjct: 3   RIRILDESVSNAIAAGEVVENPTSMIKELIENSLDAGSKEIKLEVWNGGLD-ISISDSGC 61

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E++ ++++RH TSKI   DD  NI T+GFRGEAL SI +VS + L SR      G 
Sbjct: 62  GMSKEDLLLSIERHATSKIFTKDDLFNIRTYGFRGEALSSIASVSKMILSSRTEDMQNGT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           Q+ + G K+++++ +  N GT +E++DLF+  PAR  FL+ E  E   I D+  + A+A 
Sbjct: 122 QMNVLGGKVTNLKDIQRNIGTQIEIKDLFYNTPARKKFLRKENTEYLNIKDIFLKEALAN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F  +       K    ++       I ++ G++++ N  + +         GY G 
Sbjct: 182 PNVKFILNIEGKESIK----TSGNGIENAILEIFGKNYLKNFSKFSL--------GYLGN 229

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
               + N +  +VFINGR+V+ K +   +  AY   +  G+YP  ++ LE++P ++DVNV
Sbjct: 230 ANLFKANRDSIFVFINGRSVKSKIVEEAVIAAYHTKLMKGKYPTALIFLEVEPSEIDVNV 289

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           HP+K  ++F N   I + +   I+          S 
Sbjct: 290 HPSKKVVKFANQNAIFDLVKGEIENFFTDDEDFISP 325



 Score =  176 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 5/199 (2%)

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
            ++  +          Q+   +I+ +    L I DQH  HER+++EK++Q++ +  ++ Q
Sbjct: 481 FDDFSSLKNIDFKVIGQVFDTFILVERNGLLEIYDQHIIHERILYEKLKQEYYNHSMSKQ 540

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
           +LL P   +L   E  L +E+ E     G   + F  N I +R IP +  + +   + R+
Sbjct: 541 SLLVPIRFELDPREKQLALENIEIFSSFGFDIDDFDKNEILLRSIPTMNLRDSYENIFRE 600

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           I+D I  +       D  ENI+ +M+C G+I++  K+   EM  ++ ++ +      C H
Sbjct: 601 ILDNISKNKDI----DIRENIIVSMSCKGAIKANHKLTIEEMYSMVAKLHEVGE-YTCPH 655

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRP  +K+ L D+EKLF R
Sbjct: 656 GRPIIVKMSLLDLEKLFKR 674


>gi|254567882|ref|XP_002491051.1| Protein required for mismatch repair in mitosis and meiosis as well
           as crossing over during meiosis [Pichia pastoris GS115]
 gi|238030848|emb|CAY68771.1| Protein required for mismatch repair in mitosis and meiosis as well
           as crossing over during meiosis [Pichia pastoris GS115]
 gi|328352423|emb|CCA38822.1| DNA mismatch repair protein mutL [Pichia pastoris CBS 7435]
          Length = 633

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 131/533 (24%), Positives = 226/533 (42%), Gaps = 28/533 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KEL+EN++DA+S+ ++ +I  GG    Q+TDNG 
Sbjct: 4   RIKALDIDVVNKIAAGEIIVAPENALKELLENAIDAKSTSIDIIIQDGGLKLLQMTDNGV 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+S  +D ++I T+GFRGEAL SI  +S LT+ ++   +    
Sbjct: 64  GIYKEDLPILCERFTTSKLSTFEDLNSIGTYGFRGEALASISHISRLTVTTKTKDSACAY 123

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +      ++    +PVA   GT + + DLF+ +P+RL  LK    + + I DV+ R AI 
Sbjct: 124 RAIYQEGRMVGEPKPVAGKDGTQILIEDLFYNVPSRLRSLKGGNEQLSKILDVVARYAIN 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              V+F+          +     N +  +++  V G    +     AVE +E+   ++ +
Sbjct: 184 TDGVAFSVKKAGD-TLNLLAVRANNSTKDKVRTVFGSAVASELLPIAVEKSEEIGLLSCE 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G     ++    +     FINGR V    +   I   Y+  +P G  P V L ++I    
Sbjct: 243 GQITNTSYYSKKSVSPIFFINGRLVSCDPLKRMITQLYSSFLPKGHKPFVYLRIDIKREN 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +DVNVHP K  +RF     I   I QSIQ  +     S   V ++ ++   +      T 
Sbjct: 303 LDVNVHPTKREVRFLFEDEIFQVIFQSIQAKLGSLDHSRKFVTTQSVLKHQYAPQEEITK 362

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY----SEDNDPVEESEATHYQLGIAC 410
            P+      + Q K+    N  +T               S   +  ++ E    +     
Sbjct: 363 KPQTLLRTDDLQSKITAFINTTNTESFGTIVKDRVTVKLSSILELRQQLENKVSEDLTNM 422

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
              H    +      L  +        + +  +  +       S       +    E   
Sbjct: 423 FAKHTYVGLVDPNRRLCCIQYDVKLFLVDYASISYELIYQIGLSDFNNFGTLYLESEKPI 482

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
                  E L    I  E           +P I    ++ + L ++ D +++ 
Sbjct: 483 ----TIRELLE---IVYESID------TSVPPI---DDVLEALFEMKDMLLEY 519


>gi|45198322|ref|NP_985351.1| AFL199Cp [Ashbya gossypii ATCC 10895]
 gi|44984209|gb|AAS53175.1| AFL199Cp [Ashbya gossypii ATCC 10895]
          Length = 771

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 189/380 (49%), Gaps = 11/380 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ V+ ++  GG    QI+DNG 
Sbjct: 48  RIKALEASVVNKIAAGEIIISPVNALKEMMENSIDAGATNVDILVKDGGIKMLQISDNGC 107

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S I T+GFRGEAL SI  ++ L ++++  +N    
Sbjct: 108 GIMKDDLPILCERFTTSKLKSFEDLSRIQTYGFRGEALASISHIARLHVVTKTKENQCAW 167

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +       +    +P A   GT + V+DLF+ +P+RL  L+S   E   I DV+ + AI 
Sbjct: 168 KAVYENGVMVGEPKPTAGKDGTTILVQDLFYNVPSRLRALRSPSEEFAKIVDVVGKYAIH 227

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL----NEKSNEITLQ 234
              V F+       +Y +N +    +  ++I  V G   + N VE+    + +    +  
Sbjct: 228 SDGVGFSCKKFGETQYALNVR-GTSSKSDKIRAVFGAPVVANLVEVDISADPEHGLTSSS 286

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G    P FN   +     FIN R V    +   +   Y+  +P G  P + + L I P  
Sbjct: 287 GQITTPDFNNKKSIPAVFFINNRLVSCDPLRRALSQVYSNFLPKGNKPFIYMSLHITPEN 346

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP K  +RF     +   I   + + +++   S +    K    +  + ++  + 
Sbjct: 347 VDVNVHPTKREVRFLYEEELIERIGNLLHERLSQLDTSRT---FKPGSLTPGKHSSTVSS 403

Query: 355 LPKYATSLTNTQEKLFLQEN 374
             + + +  +TQ K    EN
Sbjct: 404 AFRQSATPASTQPKAKRAEN 423


>gi|326426663|gb|EGD72233.1| hypothetical protein PTSG_00253 [Salpingoeca sp. ATCC 50818]
          Length = 891

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/343 (30%), Positives = 168/343 (48%), Gaps = 14/343 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E ++N+IAAGE+I+RP+ AIKE+ EN+LDA +S +  V+  GG    QI D+G 
Sbjct: 6   RIVRLEEDVVNRIAAGEVIQRPANAIKEMFENALDAGASSISVVVKSGGLKMLQIQDDGH 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK++  +D + I T GFRGEAL SI  V+HL+++SR   +    
Sbjct: 66  GINRKDMDIVCERFTTSKLTKFEDLTTIATHGFRGEALASISHVAHLSIISRTKDSPCAY 125

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K++          +P A N GT + V DLFF +P R   LKS   E N I D+
Sbjct: 126 KAHYRDGKLTPPKPGKPSDPKPCAGNQGTQITVEDLFFNVPTRRRALKSPSDELNRIMDI 185

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSN 229
           + R A+    V  +          +          + I+ + G    N    +E  ++  
Sbjct: 186 MSRYAVHNSGVGVSLKKHGETSPLLRTTPG-ATTRDNIAAIYGSKVANELLEIEDADEEL 244

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
              ++G+     ++        +FIN R V    I   + + YA  +P   +    + LE
Sbjct: 245 AFKVRGFITNANYSVKKPT-LLLFINHRAVHSTNIRKALDSVYAAYLPRHTHCFAYISLE 303

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           I P  VDVNVHP K  + F +   I   + Q + K +    +S
Sbjct: 304 IKPEHVDVNVHPTKKEVHFLHEEDIVERLQQLVSKRLVGGNMS 346


>gi|320449601|ref|YP_004201697.1| DNA mismatch repair protein MutL [Thermus scotoductus SA-01]
 gi|320149770|gb|ADW21148.1| DNA mismatch repair protein MutL [Thermus scotoductus SA-01]
          Length = 567

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 144/622 (23%), Positives = 248/622 (39%), Gaps = 114/622 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGK----------- 51
           IR L E++   +A GE++      ++EL+EN+LDA + RV   + GGG+           
Sbjct: 2   IRPLPEELRGLLARGEVVFSLRDVVRELLENALDAGAKRVRVELYGGGRERAFPEGNTWR 61

Query: 52  ----------------SFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGE 95
                               + D+G G+   E+P+AV+   TSK+  D   I T GFRG+
Sbjct: 62  AFPEGNTWRAFPEGNTWRIVVEDDGQGIPLAELPLAVEPFATSKLL-DPGRITTLGFRGQ 120

Query: 96  ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL 155
           AL ++   + L + SRP     G  +   GE++  VR V   PGT VEV   +    +  
Sbjct: 121 ALYALRQAALLRIRSRPRFQVGGGLLLARGERV-EVREVPAPPGTRVEVVG-WEGEGSER 178

Query: 156 NFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
                       + +++RR  + YP +S  F      R             E      G 
Sbjct: 179 E-----------VAELLRRYLLHYPWLSLAFFAEGEARLLFP----GAGLKEAARLAFGR 223

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV-QDKFILSTIRTAYAE 274
                 + +  ++  + LQG    P  +R   +  ++ INGR V   + +L T+R AY E
Sbjct: 224 VLTERLLPVEREAGGMRLQGLLSGPQASRTRPDLLFLAINGRPVAWPEGLLKTVRRAYRE 283

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
            +P G +PV VL L +      + +   K  +          F+ + +++A  +  ++ S
Sbjct: 284 LLPEGHFPVGVLNLTLPLEAFRLRLDARKEEVAVLEEVE--AFVEEGLREAFQRHNLARS 341

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                           P+  +P    + +                               
Sbjct: 342 LPE-------------PRPLMPLSPPTPSGLPP--------------------------- 361

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                            Q   +Y++++  D L +VDQHAAHER+++E+ ++      +  
Sbjct: 362 ------------LRYLGQFRGSYLLAEAGDTLYLVDQHAAHERVLYEEFQRRLKEEGL-- 407

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS--KKNIPQL 512
           + L  P +++L   E  L+ E  E L  L    E FGP  + +   P+ L      +P++
Sbjct: 408 RELPYPVLVELSPAEEVLLPERQEALASL-FALEAFGPGRVRLLAAPSFLHPYPLLLPEI 466

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
            R+ +          +L      +LA +AC  ++++G  +   E   LL  + +      
Sbjct: 467 FREALR-----GEGKSLT----ELLARLACLPAVKAGHPLSRAEGQALLDALLQCQTPWV 517

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRPT + LK  D+ + FGR
Sbjct: 518 CPHGRPTLLALKEEDLIRRFGR 539


>gi|156845600|ref|XP_001645690.1| hypothetical protein Kpol_1043p22 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116357|gb|EDO17832.1| hypothetical protein Kpol_1043p22 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 743

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/406 (28%), Positives = 197/406 (48%), Gaps = 8/406 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII  P  A+KE++ENS+DA  S ++ ++  GG    QITDNG 
Sbjct: 4   KIKALDPSVVNKIAAGEIIISPVNALKEMMENSIDAGCSSIDILVKDGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+S  +D  NI T+GFRGEAL SI  +S +T+ ++   +    
Sbjct: 64  GIEKDDLPILCERFTTSKLSKFEDLGNIETYGFRGEALASISHISRVTVTTKTKNDQCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ S  K+    +PVA   GT++ V DLF+ IP+RL  L+S   E + I DV+ R A+ 
Sbjct: 124 KVSYSEGKMLGQPKPVAGRDGTVILVEDLFYNIPSRLRSLRSPSDEYSKILDVVGRYAVH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+   +  + + +  ++      ERI  V G +  ++     +   E      + 
Sbjct: 184 SKDIGFSCKKMGDSNFTLTVRANL-TIQERIRTVFGNNVSSHLIDYELPEIEDIGVKRID 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    + Q   FIN R V    +  ++   +   +  G    + L + IDP+ 
Sbjct: 243 GQVTDLNFQMKKSIQPIFFINNRLVTCDPLRRSLNQVFGTYLSKGFKAFIYLNILIDPQS 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP K  +RF N   I   I   +   ++K   S +   S  +     +       
Sbjct: 303 VDVNVHPTKREVRFLNQDEIIEKINFHLNDELSKLNTSRTFKTSTLLTGQPVEVTVVSNS 362

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
               A+    +Q +L   +N++  + L+ +D       +     +E
Sbjct: 363 QNSNASRPVRSQSQLQQIKNKIYEHKLVRTDSSQSKITSFMKPPTE 408


>gi|195149506|ref|XP_002015698.1| GL11208 [Drosophila persimilis]
 gi|194109545|gb|EDW31588.1| GL11208 [Drosophila persimilis]
          Length = 675

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/328 (33%), Positives = 175/328 (53%), Gaps = 5/328 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG +  QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAKSSHIQVHVKSGGLTLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HLT+ ++  Q   G +
Sbjct: 70  IRREDLEIVCERFTTSKLAKFEDLSQIATFGFRGEALASISHVAHLTIQTKTAQERCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  ++    +P A N GTI+ + DLF+ +  R   LKS   E   ++DV+ + A+  
Sbjct: 130 AIYADGRLQGQPKPCAGNQGTIITIEDLFYNMSQRRQALKSPGDEFQKLSDVLAKYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT       +  +       +  E I  + G       +  + K+     +    +
Sbjct: 190 PQVGFTLRKQGEPQPSLKT-PVASSRSENIRIIYGAGISKELLHFSHKNEVFKFEVECLL 248

Query: 240 PTFNRG-NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N     +Q  +FIN R V+   +   +   YA  +P G +P V + L++ P+ +DVN
Sbjct: 249 TQVNYSAKRSQMLLFINQRLVESPALKCAVDAVYATYLPRGHHPFVYMSLKLPPQNLDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           VHP K  + F     I   + + ++  +
Sbjct: 309 VHPTKHEVHFLYQDEIVERLKEQVEIQL 336


>gi|91088905|ref|XP_972898.1| PREDICTED: similar to Mlh1 CG11482-PA [Tribolium castaneum]
 gi|270011580|gb|EFA08028.1| hypothetical protein TcasGA2_TC005617 [Tribolium castaneum]
          Length = 648

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 134/488 (27%), Positives = 211/488 (43%), Gaps = 20/488 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL E +IN+IAAGEII+RP+ A+KE+IENSLDA S+ ++  +  GG    QI DNG G
Sbjct: 7   IKKLDEAVINRIAAGEIIQRPANALKEMIENSLDAHSTNIQITVKNGGLKLLQIQDNGTG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  ++  +  +R  TSK+   DD  NI T+GFRGEAL SI  ++HLT++S+        +
Sbjct: 67  IRKDDFAIVCERFTTSKLREFDDLQNIATYGFRGEALASISHIAHLTIVSKTCNELCAYK 126

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                 K+  +  P A N GTIV V DLFF +  R   L+S   E   I++V+ + AI  
Sbjct: 127 AHFVDGKLQGAPLPTAGNQGTIVTVEDLFFNMSVRKKALRSPAEEYQKISEVVGKYAIHN 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ--GYT 237
            KV F     KSN         +    E I  V         V+   +++ +  +  GY 
Sbjct: 187 SKVGFGLR--KSNENNDIRTPPDSTCVENIRIVYSNTIARELVDFELENDILKFKARGYM 244

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               ++        +FIN R V    +   I   YA  +P   +P V L LE+DP  VDV
Sbjct: 245 TNVNYSSKKFTFL-LFINNRLVDCNNLKKCIDQVYATYLPKNSHPFVYLSLELDPVSVDV 303

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F N   I   +  +++  + K   S       K+  +         +LP 
Sbjct: 304 NVHPTKHEVHFLNEDQIVEAVCGALETRLLKSNNSRVYYTQAKLPGA------QADNLPL 357

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
             T  +    K F++ +  S   +        SE         +   ++      + +  
Sbjct: 358 KDTDKSKIYPKEFVRTD-ASEQKIEKFFGAPMSEKEGLSAPFISKVNRVDTELTSVLELR 416

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
              +     V+ D  A H  +    +       + +++  L      + E     ++ + 
Sbjct: 417 KAVEKNCHRVLRDLFAQH--VFVGAINPSQALIQYSTKLFLCNTRKIMTELLYQFVLYN- 473

Query: 478 EDLHRLGI 485
                 G 
Sbjct: 474 --FQNFGF 479


>gi|198456278|ref|XP_001360282.2| GA11026 [Drosophila pseudoobscura pseudoobscura]
 gi|198135556|gb|EAL24857.2| GA11026 [Drosophila pseudoobscura pseudoobscura]
          Length = 675

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 109/328 (33%), Positives = 175/328 (53%), Gaps = 5/328 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGEII+RP+ A+KEL+ENSLDA+SS ++  +  GG +  QI DNG G
Sbjct: 10  IRKLDEVVVNRIAAGEIIQRPANALKELLENSLDAKSSHIQVHVKSGGLTLLQIQDNGTG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK++  +D S I TFGFRGEAL SI  V+HLT+ ++  Q   G +
Sbjct: 70  IRREDLEIVCERFTTSKLAKFEDLSQIATFGFRGEALASISHVAHLTIQTKTAQERCGYK 129

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  ++    +P A N GTI+ + DLF+ +  R   LKS   E   ++DV+ + A+  
Sbjct: 130 AIYADGRLQGQPKPCAGNQGTIITIEDLFYNMSQRRQALKSPGDEFQKLSDVLAKYAVHN 189

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+V FT       +  +       +  E I  + G       +  + K+     +    +
Sbjct: 190 PQVGFTLRKQGEPQPSLKT-PVASSRSENIRIIYGAGISKELLHFSHKNEVFKFEVECLL 248

Query: 240 PTFNRG-NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
              N     +Q  +FIN R V+   +   +   YA  +P G +P V + L++ P+ +DVN
Sbjct: 249 TQVNYSAKRSQMLLFINQRLVESPALKCAVDAVYATYLPRGHHPFVYMSLKLPPQNLDVN 308

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           VHP K  + F     I   + + ++  +
Sbjct: 309 VHPTKHEVHFLYQDEIVERLKEQVEIQL 336


>gi|51245818|ref|YP_065702.1| DNA mismatch repair protein MutL [Desulfotalea psychrophila LSv54]
 gi|50876855|emb|CAG36695.1| probable DNA mismatch repair protein MutL [Desulfotalea
           psychrophila LSv54]
          Length = 342

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 171/337 (50%), Gaps = 6/337 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E++ NQIAAGE++ERP+  +KELIENSLDA + R+E  I GGG    +I DNG 
Sbjct: 3   KIRILPEQLANQIAAGEVVERPASVVKELIENSLDAGADRIEVEIVGGGTKLIRIIDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  ++I + ++RH TSKI   +D   I T GFRGEALPSIG+VS L++ SR   +  G 
Sbjct: 63  GMDGDDIFLCLERHGTSKIRNQEDLGAISTLGFRGEALPSIGSVSQLSISSRTYNSELGY 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ +    +          GTI+E+R+LF  +PAR  FL++ + E   I +VI+  ++  
Sbjct: 123 RVELRYGTLVKSHETGCAVGTIIEIRNLFGNVPARRKFLRTTRTELGHIDEVIKNYSLVA 182

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
             VSF           +   S + N  +R+++++ +      ++ +       + G    
Sbjct: 183 SDVSFVLRVDGRETINL---SGSFNLIQRLAKIMHQPEEFFPIDFSTDGEH-RVTGLLLA 238

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P      + +  VF+NGR V+D+ I+  +       +  G+ P  ++LLE+ P ++ +  
Sbjct: 239 PEKVSPGSARLRVFVNGRAVKDRMIVHAVAEGMRGFLMKGKNPAGLILLEVPPEEMTLTF 298

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
                   F       ++        + +     S +
Sbjct: 299 IRQNMKFVFAGLRRCTDWCKPGFLLPLGQSRAIYSKI 335


>gi|297744800|emb|CBI38068.3| unnamed protein product [Vitis vinifera]
          Length = 366

 Score =  292 bits (748), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 168/337 (49%), Gaps = 10/337 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + ++N+IAAGE+I+RP  A+KEL+ENSLDA S+ +  V+  GG    Q++D+G 
Sbjct: 17  RIHRLDQSVVNRIAAGEVIQRPVSAVKELVENSLDAHSTSINVVVKDGGLKLIQVSDDGH 76

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +RH TSK+S  +D  +I + GFRGEAL S+  V H+T+ +       G 
Sbjct: 77  GIRYEDLPILCERHTTSKLSEFEDLQSIKSMGFRGEALASMTYVGHVTVTTITAGQLHGY 136

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++     +    +  A   GT + + +LF+ + AR   L++   +   I D++ R AI 
Sbjct: 137 RVSYRDGVMEHEPKACAAVKGTQIMIENLFYNMTARRKTLQNSADDYPKIVDLLSRFAIH 196

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNEKSNEITL 233
           +  V+F+     + R  ++  +T+    + I  V G     N +     + +  S+   +
Sbjct: 197 HINVNFSCRKHGAARADVHTVATSSRL-DAIRSVFGVSVARNLMKIEAADDDVSSSVFEM 255

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G+     +         +FIN R V+   +   I   YA T+P    P + + + +   
Sbjct: 256 DGFISNSNY-IAKKTTMVLFINDRLVECTALKRAIEIVYAATLPKASKPFIYMSIVLPSE 314

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            VDVN+HP K  +   N   I   I  + +  +    
Sbjct: 315 HVDVNIHPTKREVSLLNQEAIIEKIQSAFESKLRNSN 351


>gi|149920377|ref|ZP_01908847.1| DNA mismatch repair protein [Plesiocystis pacifica SIR-1]
 gi|149818819|gb|EDM78261.1| DNA mismatch repair protein [Plesiocystis pacifica SIR-1]
          Length = 721

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 180/374 (48%), Gaps = 5/374 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS  + +QIAAGE++ERP+  +KEL++N++DA + RVE  + GGG+   ++ D+G 
Sbjct: 15  RIAVLSAALADQIAAGEVVERPASIVKELVDNAVDAGARRVEVELTGGGRDGIRVVDDGR 74

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++P+A+ RH TSK+ D      I T GFRGEAL SI AV+ + L SR      G 
Sbjct: 75  GIHAEDLPLALTRHATSKLDDPAQLIEIRTLGFRGEALASIAAVARVDLRSRRRGEGVGH 134

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      +  SV P+ M  GT V +  LF  +PAR  FL+SE  E     D + R+A+ +
Sbjct: 135 RARSVPGEALSVEPIGMPEGTQVSIEALFANVPARRKFLRSEATEVGHCVDAVIRIALVH 194

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V F          ++            +++  G       + +  +   + ++ +   
Sbjct: 195 PGVQFKLRHNGRKLLELAAGDLGARVSSLLTRRGGT---GPYLHVAGERRGVEVEAWLAP 251

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P       N  +V +  R V+++ +   +R  YAE +P  R+PV  L +E  P  VDVNV
Sbjct: 252 PEGASRQRNASFVVVRRRVVRERTLAKMLRELYAERLPAQRHPVACLFVEPPPGTVDVNV 311

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP KS +RF +   +   + + + +        T+   +     ++ +            
Sbjct: 312 HPQKSEVRFSSAQDVFAAVREVLDEGSAGAPWRTAEGAAIPDDGAWPEPGPGAGASVARD 371

Query: 360 TSLTNTQEKLFLQE 373
              ++   +  L E
Sbjct: 372 EGSSSEGARAALAE 385


>gi|55981292|ref|YP_144589.1| DNA mismatch repair protein MutL [Thermus thermophilus HB8]
 gi|62298031|sp|Q9RA54|MUTL_THET8 RecName: Full=DNA mismatch repair protein mutL
 gi|55772705|dbj|BAD71146.1| DNA mismatch repair protein MutL [Thermus thermophilus HB8]
          Length = 545

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 136/587 (23%), Positives = 234/587 (39%), Gaps = 78/587 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++   +A GE++     A++EL+EN+LDA + RV   + GGG     + D+G G
Sbjct: 2   IRPLPPELRGLLARGEVLLTVKDAVRELLENALDAGARRVRVELWGGGLKRLVVEDDGEG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  E++P+AV+ + TSK+  D   I T GFRG+AL ++   + L + SRP     G  + 
Sbjct: 62  IPLEDLPLAVEPYATSKLQ-DLEGIRTLGFRGQALYALRQAARLRIRSRPRGQLGGGLLL 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             GE++   RPV   PGT VEV  LF      L   +  + E   + ++++R  + +P++
Sbjct: 121 AEGERVEV-RPVPAPPGTRVEVEGLF------LGEGRDPKGEVRGVLELLKRYLLHHPRL 173

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           +         R             E      G       + L   +  + +QG    P  
Sbjct: 174 ALALFAEGEARLLFP----GAGLEEAARLAFGRLLAKRLLPLAYGAGGLEVQGLVSRPEV 229

Query: 243 NRGNANQFYVFINGRTVQDKF-ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   ++ ++ +NGR V     +L  +R AY E +P G YPV VL L +           
Sbjct: 230 SRTRPDRLFLAVNGRPVAFPEGLLRRVRRAYRELLPEGHYPVGVLNLFL----------- 278

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
                    P       + + ++ +       + V    +     ++ A     PK    
Sbjct: 279 ---------PQEAFRLRLDARKEEVVLSEEVEALVEEALLALFRRENLARALPEPKPLQP 329

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           L+        +                                      AQ  ++Y++++
Sbjct: 330 LSPPTASGLPR----------------------------------LRFLAQFRESYLLAE 355

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L +VDQHAAHER+++E + +            L   +    E       E    L 
Sbjct: 356 AGDTLYVVDQHAAHERILYEDLLKRVAEGPKPLPRPLLVPLAPEEEALLEAGQEALAAL- 414

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
               + E FGP  + +   PA L    +  LL ++  E +      +L+     +LA +A
Sbjct: 415 ---FRWEPFGPGRVRLLMAPAFLHPYPL--LLPEVFKEAL-RGEGRSLK----ALLARLA 464

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           C  ++++G  +   +   LL  +        C HGRP  + LK  D+
Sbjct: 465 CLPAVKAGHPLGEAQGQALLDALLACETPWACPHGRPVLLALKEEDL 511


>gi|6518488|dbj|BAA87903.1| Mismatch repair enzyme (MutL) [Thermus thermophilus]
          Length = 545

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 137/587 (23%), Positives = 234/587 (39%), Gaps = 78/587 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++   +A GE++     A++EL+EN+LDA + RV   + GGG     + D+G G
Sbjct: 2   IRPLPPELRGLLARGEVLLTVKDAVRELLENALDAGARRVRVELWGGGLKRLVVEDDGEG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  E++P+AV+ + TSK+  D   I T GFRG+AL ++   + L + SRP     G  + 
Sbjct: 62  IPLEDLPLAVEPYATSKLQ-DLEGIRTLGFRGQALYALRQAARLRIRSRPRGQLGGGLLL 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             GE++   RPV   PGT VEV  LF      L   +  + E   + ++++R  + +P++
Sbjct: 121 AEGERVEV-RPVPAPPGTRVEVEGLF------LGEGRDPKGEVRGVLELLKRYLLHHPRL 173

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           +         R             E      G       + L   +  + +QG    P  
Sbjct: 174 ALALFAEGEARLLFP----GAGLEEAARLAFGRLLAKRLLPLAYGAGGLEVQGLVSRPEV 229

Query: 243 NRGNANQFYVFINGRTVQDKF-ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   ++ ++ +NGR V     +L  +R AY E +P G YPV VL L +           
Sbjct: 230 SRTRPDRLFLAVNGRPVAFPEGLLRRVRRAYRELLPEGHYPVGVLNLFL----------- 278

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
                    P       + + ++ +       + V    +     ++ A     PK    
Sbjct: 279 ---------PQEAFRLRLDARKEEVVLSEEVEALVEEALLALFRRENLARALPEPKPLQP 329

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           L+        +                                      AQ  ++Y++++
Sbjct: 330 LSPPTASGLPR----------------------------------LRFLAQFRESYLLAE 355

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L +VDQHAAHER+++E + +            L   +    E       E    L 
Sbjct: 356 AGDTLYVVDQHAAHERILYEDLLKRVAEGPKPLPRPLLVPLAPEEEALLEAGQEALAAL- 414

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
               + E FGP  + +   PA L    +  LL ++  E +      TL+     +LA +A
Sbjct: 415 ---FRWEPFGPGRVRLLMAPAFLHPYPL--LLPEVFKEAL-RGEGRTLK----ALLARLA 464

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           C  ++++G  +   +   LL  +        C HGRP  + LK  D+
Sbjct: 465 CLPAVKAGHPLGEAQGQALLDALLACETPWACPHGRPVLLALKEEDL 511


>gi|316968447|gb|EFV52725.1| DNA mismatch repair protein Mlh1 [Trichinella spiralis]
          Length = 714

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/338 (31%), Positives = 176/338 (52%), Gaps = 7/338 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ L + +I++IAAGE+I  P   +KEL+ENS+DA ++++   I+GGG    +I DNG 
Sbjct: 6   PIKPLKKCVIDRIAAGEVILSPMNVVKELMENSVDAGANQINISISGGGLKLIRIQDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++ P+  QRH TSK+ D  D  NI T GFRGEAL SI  V+H+T+ S+   +  G 
Sbjct: 66  GIRRDDFPVVCQRHATSKLEDFTDLLNISTLGFRGEALSSICCVAHVTVTSKTLDSVVGY 125

Query: 120 QIAISGEKISSVRPVAM-NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +   +GEK++        N GT++ V +LF+  P R   +K+   E N I D++ + AI 
Sbjct: 126 ECRFNGEKMTEPPKALASNQGTVISVENLFYNNPVRQRLMKNSVEEWNRIVDLVAKFAIH 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGY 236
           +  + F+      N  ++   +T G+  E+++   G       +  +    +     +G 
Sbjct: 186 FTSIGFSLKREDRNISELKT-TTQGSTNEKLATCFGSSVAKELIAFDCTEPKLGFKAKGL 244

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
               +++        +FIN R V+   +    +  Y+  +P   YP + + +EI P  VD
Sbjct: 245 ISSTSYS-SKKFTLCLFINNRLVECLALKRGFQALYSNYLPKQCYPFIYISMEISPHLVD 303

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           VN+HP K+ I F N + I   I+Q+  K +     S S
Sbjct: 304 VNLHPTKAEISFMNESDIVENILQAADKTLLAGDKSRS 341


>gi|46203827|ref|ZP_00050925.2| COG0323: DNA mismatch repair enzyme (predicted ATPase)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 352

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/286 (41%), Positives = 181/286 (63%), Gaps = 4/286 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            +R+L   ++++IAAGE++ERP+ A+KEL+EN++DA +  VE  I GGG+   ++ D+G 
Sbjct: 13  PVRRLDPILVDRIAAGEVVERPASAVKELVENAIDAGARSVEVAIEGGGRRLIRVIDDGI 72

Query: 62  GMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           GM  E++ +AV+RH TSKI D D + I + GFRGEALPSIGAVS L + SR  Q   G  
Sbjct: 73  GMGPEDLELAVERHATSKIPDNDLTRIGSLGFRGEALPSIGAVSRLVITSRTAQGE-GVS 131

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + +       VRP   + GT +EV +LF   PARL FLKS++ E+  ++++IRR+A+A P
Sbjct: 132 LTVDSGVKGPVRPAPASRGTRIEVTELFAATPARLKFLKSDRAESAAVSEIIRRLAVAQP 191

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           +V FT  +   +      +S  G   F  R+  V+G DF  NAV ++       LQG+ G
Sbjct: 192 QVRFTLRSESGSPTVFPAESEPGQAAFLRRLGAVLGPDFPANAVPVDMAREGFALQGHVG 251

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
           +PTF+RG A+  +  +NGR V+D+ +L  +R A+A+T+   R+PV 
Sbjct: 252 LPTFHRGAASHIHFVVNGRPVRDRLLLGAVRGAFADTMSSDRHPVW 297


>gi|50307053|ref|XP_453504.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642638|emb|CAH00600.1| KLLA0D09955p [Kluyveromyces lactis]
          Length = 724

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 192/385 (49%), Gaps = 14/385 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEI+  P  A+KE++ENS+DA+++ V+ ++  GG    QITDNG 
Sbjct: 4   RIKPLDVSVVNKIAAGEIVIAPVNALKEMMENSIDAKATMVDILVKDGGIKLLQITDNGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P+  +R  TSK+   +D S I TFGFRGEAL SI  ++ +T+ ++  ++    
Sbjct: 64  GIDKDDLPILCERFTTSKLEVFEDLSKIETFGFRGEALASISHIARVTVTTKTEKDQCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           + + S  KI    +PVA   GTI+ V DLF+ IP+RL  L+S   E N I DVI R +I 
Sbjct: 124 KASFSEGKILGQPKPVAGKTGTIITVEDLFYNIPSRLKALRSPGEEFNKILDVIGRYSIN 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-------I 231
              V F+      ++  +  ++      +R+  V G +   N +ELN    +       +
Sbjct: 184 NNNVGFSCKKFGDSKVALMIKADLST-KDRVRIVFGANVSTNLMELNIDITDDVQRNGLL 242

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           +  G+     F          FINGR V    +  +    Y+  +P G  P +   L I 
Sbjct: 243 SASGFVTNLDFTNKKPIPPAFFINGRLVSCDPMRRSFYQIYSNFLPKGNKPFIYFSLTIK 302

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P+ VDVN+HP K  +RF N   I + +   +Q  +     S +    K   S  +     
Sbjct: 303 PQNVDVNIHPTKREVRFLNEEEIIDRLAILLQDKLASIDTSRT---FKTASSVSNPYQVQ 359

Query: 352 KTHLPKYATSLTNTQEKLFLQENRL 376
                  +    +T  K+  QEN+L
Sbjct: 360 LIGSSNESQDSPSTNLKMKRQENKL 384


>gi|126238204|gb|ABO07413.1| MLH1 [Solanum lycopersicum]
          Length = 730

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 10/401 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L E ++N+IAAGE+I+RP  A+KELIENSLDA+S+ +  V+  GG    Q++D+G 
Sbjct: 16  KIQRLEECVVNRIAAGEVIQRPVSAVKELIENSLDADSTSISVVVKDGGLKLIQVSDDGH 75

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R+ TSK+S  +D  +I + GFRGEAL S+  V H+T+ +       G 
Sbjct: 76  GIRYEDLPILCERYTTSKLSKFEDLQSIRSMGFRGEALASMTYVGHVTVTTITMGQLHGY 135

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     G  +   +  A   GT + + +LF+ + AR   L++   +   I D+I R  I 
Sbjct: 136 RATYRDGLMVDEPKACAAVKGTQIMIENLFYNMAARRKTLQNSADDYPKIVDIISRFGIH 195

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-----EITL 233
           +  VSF+     + R  ++  +T+    + I  V G     + + +             +
Sbjct: 196 HTHVSFSCRKHGAGRADVHTIATSSRL-DAIRSVYGASVARDLMNIEVSDTGPLISVFKM 254

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G+     +         +FIN R +    +   I   Y  T+P    P + + + + P 
Sbjct: 255 DGFISNSNY-IAKKTTMVLFINDRLIDCGALKRAIEIVYTATLPKASKPFIYMSIILPPE 313

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVN+HP K  + F N   +   I   +   +     S +       +SS        T
Sbjct: 314 HVDVNIHPTKREVSFLNQEFVIEKIQSVVGSKLRSSNESRTFQEQTMDLSSSGPMGQDST 373

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                +   +       ++ + L  +  L +        N 
Sbjct: 374 KESSPSGIKSQKVPHKMVRTDTLDPSGRLHAYMQMKPPGNS 414


>gi|294660048|ref|XP_462501.2| DEHA2G22022p [Debaryomyces hansenii CBS767]
 gi|199434432|emb|CAG91011.2| DEHA2G22022p [Debaryomyces hansenii]
          Length = 797

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 123/417 (29%), Positives = 198/417 (47%), Gaps = 30/417 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   ++N+IAAGEII +P+ A+KEL+ENS+DA+S+ ++ +I  GG    QI+DNG 
Sbjct: 44  KIKHLDTSVVNRIAAGEIIIQPANALKELLENSIDAKSTMIDILIKDGGLKLLQISDNGH 103

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+S  +D  +I T+GFRGEAL SI  ++ L+++++        
Sbjct: 104 GINKDDMCLLCERFTTSKLSKFEDLESIATYGFRGEALASISHIARLSVITKTKSTQLAH 163

Query: 120 QIAISGEKISS-----------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +      K+++            +P+A   GT + V DLF+ +P+RL  LKS+  E + I
Sbjct: 164 KAYYLNGKLTNANFKADVPNVEPKPIAGKDGTQIIVEDLFYNVPSRLKTLKSKNDEFSKI 223

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV------ 222
            DVI R A+    V F+      +   +  + T     ERI  V G    N  +      
Sbjct: 224 LDVIGRYAVHTEGVGFSCKKFGESYQVLVTRPTM-TLTERIRTVFGPAVANELIDVEIKG 282

Query: 223 ------ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 +   K   + + G      +N     Q   FIN R V  + +   I + Y   +
Sbjct: 283 NETVEEDYQGKYGLVRVSGAITNSNYNNKKKIQPVFFINHRLVTCEPLKRAISSIYQFFL 342

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---- 332
           P G  P + L LEI+P+ +DVNVHP K  +RF     I   I   + + ++    S    
Sbjct: 343 PKGTQPFMYLSLEIEPQNLDVNVHPTKREVRFLYEDEIIEIISSKVHQLLSSIDSSRKFK 402

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           T ++LS +       D              ++   K + QEN+L   D   S   T+
Sbjct: 403 TQNILSNRQDLKRSNDEFSGLPREHTLNQSSSQPAKKYRQENKLVRVDAQQSKLNTF 459


>gi|320586224|gb|EFW98903.1| DNA mismatch repair protein [Grosmannia clavigera kw1407]
          Length = 695

 Score =  290 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 136/555 (24%), Positives = 224/555 (40%), Gaps = 36/555 (6%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L   ++N+IAAGEII  P  A+KEL+EN++DA S+ +E ++  GG    QITDNG G+  
Sbjct: 5   LDPDVVNKIAAGEIIIAPVHALKELVENAVDAGSTMLEVLVKDGGLKLLQITDNGCGIDK 64

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
            ++P+  +R  TSK+   DD  +I T+GFRGEAL SI  ++HLT+ +R   + +  +   
Sbjct: 65  GDLPILCERFTTSKLQTFDDLGSIATYGFRGEALASISHIAHLTVTTRTRDDVSAWRACY 124

Query: 124 SGEKISSVRP--------VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
              +++  +P        VA   GT + V DLF+ +P R    +S   E N I D++ R 
Sbjct: 125 EAGRLAPPKPGQDAEPKRVAGRQGTQIAVEDLFYNVPTRRRAFRSAADEHNKIVDMLGRY 184

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITL 233
           A+    V+F+      +   +          +RI  V G        A++  +       
Sbjct: 185 AVHCAGVAFSCKKHGESSASI-AVPAVATTVDRIRHVYGGAMAAELLALDTADVRWGFRA 243

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +G       +        +FIN R V+   I   +   YA  +P   +P V L L+IDP+
Sbjct: 244 RGQASSANHS-LKRTTLLLFINNRCVESANIRKALDDLYATFLPRHGHPFVYLSLDIDPQ 302

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKKMISSFHQDN 349
           +VDVNVHP K  + F N   I   +   I   +     S    T ++L  ++ +      
Sbjct: 303 RVDVNVHPTKREVHFLNEDEITRAVCDHIASKLADVDTSRTFATQTLLPTRLPAPSPALA 362

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
             KT    Y  +L  T   L    +  +    +    P  +E                  
Sbjct: 363 VKKTPARPYENNLVRTDSNLRKITSMFTPTSPMTVSCPAAAETAPSDASVHPGRQPAYDV 422

Query: 410 CAQIHQNYIISQTTD--GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
             +      +    +    V+ D H      + +  R       +  +  L      +  
Sbjct: 423 VEREPSVNWLRSVRELKEAVVADAH----GGLTDLFRHYSFVGIVDDRRRLAAIQSGVKL 478

Query: 468 GECALIMEHDEDLHRLGI-KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
                     E  ++LG+     FG     IR  P +    ++ QLLR  +     +   
Sbjct: 479 YLLDYGRACFELFYQLGLNDFGNFG----LIRFSPPL----DLAQLLRMALRLAPGNDGH 530

Query: 527 YTLQD---RIENILA 538
               D    ++ +LA
Sbjct: 531 TPSPDDTSAVDAVLA 545


>gi|255716692|ref|XP_002554627.1| KLTH0F09724p [Lachancea thermotolerans]
 gi|238936010|emb|CAR24190.1| KLTH0F09724p [Lachancea thermotolerans]
          Length = 729

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 202/441 (45%), Gaps = 13/441 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L+E ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ +I  GG    QITDNG 
Sbjct: 6   KIKPLAESVVNKIAAGEIIVAPVNALKEMMENSIDAGATAIDILIKEGGLKILQITDNGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  QR  TSK+   +D S+I T+GFRGEAL SI  ++ +T+ ++        
Sbjct: 66  GIDKSDLPILCQRFTTSKLKTFEDLSSIQTYGFRGEALASISHIARVTVTTKTKNEACAW 125

Query: 120 QIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ S  K+    +P+A   GTI+ V DLF+ + +RL  L+S   E   I D + R AI 
Sbjct: 126 RVSYSAGKMIGEPKPIAGRDGTIILVEDLFYNVQSRLRSLRSPGDEFAKILDCVGRYAIN 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL---NEKSNEITLQG 235
              V F+      +++ +  +  + +  ER+  V G    +N +EL     +    +  G
Sbjct: 186 SKNVGFSCKKFGESQFALTVRY-DADVRERVQAVFGRGTASNLIELKVPEIEGLGASASG 244

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
                 F    +     FIN R V    +   +   Y+  +  G  P + L + I P  V
Sbjct: 245 QVSTLNFINKKSISPIFFINNRLVTCDPLRRALYQTYSSHLAKGNRPFIYLNVTIRPELV 304

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPK 352
           DVNVHP K  +RF +   I   I   +   ++    S S   + +  +   S  ++    
Sbjct: 305 DVNVHPTKREVRFLHDEEIIEQIASQLGDVLSNCDTSRSFKTTSIFTQKPVSIRENLGKP 364

Query: 353 THLPKYATSLTNTQEKLFLQEN---RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
                    +T    K+  QEN   R+  +    ++    +E  +  E+S          
Sbjct: 365 HSQLINNIPVTPLGNKVKRQENKLVRIDASQTKITNYLRSAEYTENTEQSTPYKQSYEDD 424

Query: 410 CAQIHQNYIISQTTDGLVIVD 430
             Q        +   G  I D
Sbjct: 425 SIQSSCRASEGRQHQGSWIAD 445


>gi|257124945|ref|YP_003163059.1| DNA mismatch repair protein MutL [Leptotrichia buccalis C-1013-b]
 gi|257048884|gb|ACV38068.1| DNA mismatch repair protein MutL [Leptotrichia buccalis C-1013-b]
          Length = 691

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 114/346 (32%), Positives = 184/346 (53%), Gaps = 18/346 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L EK+ N IAAGE++E P+  IKE+IENSLDA+++ ++  +   G    +++DNG G
Sbjct: 4   IKILDEKVSNIIAAGEVVENPASMIKEMIENSLDAKATMIKIEVFKAGTD-VKVSDNGIG 62

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  ++  ++V+RH TSKI +  D  N++T+GFRGEAL SI AVS LT+ +R   +  G +
Sbjct: 63  MDKDDTLLSVERHATSKIKEKEDVFNLNTYGFRGEALSSIAAVSKLTITTRSENSPVGYK 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G  +     V+ N GT +EVRDLF+  PAR  FL+    E   I D++ + A++  
Sbjct: 123 IGCYGGVVRKFEEVSRNVGTEMEVRDLFYNTPARRKFLRKMSTEYGKIRDIVLKEALSNS 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F+      +  K    ++       I ++ G+  + N  +           GY G  
Sbjct: 183 NVAFSLELDGKSTIK----TSGKGIDNTILELFGKSVLRNLKKFEY--------GYLGNV 230

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + F+N R V+   I   +   Y   +  G+YP  ++    DP+++DVNVH
Sbjct: 231 EILRSSKDFMFTFVNNRYVKSATIERAVIDGYYTKLMKGKYPFAIIFYNTDPKEIDVNVH 290

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMIS 343
           P+K  I+F N  I+ N I  +I       +++    +  L KK I+
Sbjct: 291 PSKKIIKFSNDKIVYNEIKSAIDDFFYYNDRENWQPNIDLIKKNIN 336



 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 136/314 (43%), Gaps = 21/314 (6%)

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST------------SSVLSKK 340
             ++ N +   S     +  I  N          NK   S+            S+ + + 
Sbjct: 385 SAINFNKNDRNSEFSDNSENITYNTFSSDKNFVNNKNENSSKLDEIWNKMNKNSNKIVEN 444

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            + +F  ++  +T   K+ ++  N     +         D++  +    S       E  
Sbjct: 445 NVENFEIEDKFQTKKWKHNSNFKN-----YKNSGEHRNFDIINENTENKSYYKVGTFEKH 499

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                      QI   YI+ +  + L I DQH  HER+++E+++  F + K+ SQ LL P
Sbjct: 500 VGKQFHYDILGQIFDTYILVRRDEELEIYDQHIIHERILYEELKDKFYNKKLESQHLLLP 559

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             + +   E  +I E+ E     G   + F  + I IR +PA   + +I  +    +  +
Sbjct: 560 LKMGITGIEKNIIFENIEIFRDFGFDVDEFSEDEIVIRAVPAFDFRDSIENVF---LQLL 616

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
           +D      ++D  ENI+ +M+C G++++G+K+   EM  ++R + +      C HGRP  
Sbjct: 617 MDLKNEVEIKDLRENIIISMSCKGAVKAGQKLDMFEMQNMVRRIHEVGK-YTCPHGRPII 675

Query: 581 IKLKLSDIEKLFGR 594
           +KL  +D++K+FGR
Sbjct: 676 VKLSKNDLDKMFGR 689


>gi|159463744|ref|XP_001690102.1| mismatch repair protein [Chlamydomonas reinhardtii]
 gi|158284090|gb|EDP09840.1| mismatch repair protein [Chlamydomonas reinhardtii]
          Length = 1007

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 181/375 (48%), Gaps = 22/375 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E ++N+IAAGE+I+RP+ A+KE++ENSLDA S+++   +  GG    QITDNG G
Sbjct: 39  IRKLDENVVNKIAAGEVIQRPASALKEMLENSLDAGSTQISVTVKDGGNKLLQITDNGSG 98

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +   RH TSK+S  +D   I T GFRGEAL SI  VSH+ + +       G +
Sbjct: 99  IRKEDLAILCHRHTTSKLSQFEDLETISTLGFRGEALCSISFVSHMAVTTMARDAQYGFR 158

Query: 121 IAI--SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +    S  +    +PVA  PGT + V DLF+ +P R   LKS   E  LI D + R A+ 
Sbjct: 159 VTYKDSAMEAPGPKPVAAVPGTTITVEDLFYNVPTRRKALKSASEEYGLILDTLGRYAVY 218

Query: 179 Y-PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN------------ 225
             P V F+       R  ++  +  G+  + +  V G D     + L             
Sbjct: 219 SAPGVGFSCRRHGDGRPDISTTAA-GSRLDAVRAVYGADVARELLPLALAAGGGTGPEVP 277

Query: 226 -EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
            E    I L+G      +  G      +FINGR V+   +   +   YA  +P    P +
Sbjct: 278 VEGPLGIKLEGLISGANYGSGKKTVLVLFINGRCVECAPLRRALEGVYAALLPKASKPWL 337

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L L + PRQV+VN+HP K  + F +   +   I  +++  +     S  S       ++
Sbjct: 338 FLDLRLPPRQVEVNMHPTKREVGFMHQAEVIEVIRGAVEAKL---LASNDSRTFATGATA 394

Query: 345 FHQDNAPKTHLPKYA 359
             Q   P   LP  A
Sbjct: 395 TLQTVLPFASLPPPA 409


>gi|241950505|ref|XP_002417975.1| DNA mismatch repair protein (mutL homologue), putative [Candida
           dubliniensis CD36]
 gi|223641313|emb|CAX45694.1| DNA mismatch repair protein (mutL homologue), putative [Candida
           dubliniensis CD36]
          Length = 595

 Score =  289 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 122/608 (20%), Positives = 234/608 (38%), Gaps = 45/608 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L + ++ QI +  I+      ++EL++NS+DA + ++   I     S   I DNG 
Sbjct: 3   SIRQLDDSVVTQIRSHTILHSLDSVVRELLQNSVDAGADKITIKIDPVSLS-VYIHDNGP 61

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+T E++     +H TSK         TFG++GEAL ++ A+S+LT++S+    ++  ++
Sbjct: 62  GITPEDLEKVTLQHYTSK-----WQAKTFGYKGEALFALKAISNLTIISKADGYSSPFKL 116

Query: 122 AISGEKISSVRPVAMNP-------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
                K+                 GT+V   ++F  +P R       +     I   + +
Sbjct: 117 TNQVAKLYDGYSFGYFQVGDINPHGTVVIAANIFKNMPVRRQTPPKLEAVKVAILQSLIK 176

Query: 175 MAIAYPKVSFTFSTIKSNRYKM--NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
                P V  T   +    +++         ++P  + Q+ G     + V    K+  I 
Sbjct: 177 K----PSVGLTVLLVNHTTFQLDRLVSIDGSDYPTLLFQLFGIKTKFDPVSARFKN--IR 230

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G  G    +  +    Y F+N R V      S        T    +YP  +      P
Sbjct: 231 ISGIIGR---SPISPKHQYFFVNDRPVTLTPQESKRLNELFTTGNY-KYPTFIFRAH-YP 285

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
           +Q   + +     +R  +  II  F+    ++   K          K M+S+  +    K
Sbjct: 286 KQHSHDCYTWNIVLRIVH-KIISKFLEVPQKEPPVKCSTGPMKRSDKYMLSTKAKLGFLK 344

Query: 353 THLPK--YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
            +         + + +     +  ++   +L       +S   +     E          
Sbjct: 345 ENEINGLVDNRMYHVKSTPLPRMPKIVHPELPRCSCTDHSPFTNLSFSREDLAPGRFKVI 404

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
            QI + +I+    D +V++DQHA+ ER+  E+  Q+F   +     L  P    L   E 
Sbjct: 405 NQIDRKFILLTIADQIVVLDQHASDERIRVEQYLQEFVEQRHPGLRLQNPVTFILHPSET 464

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID-------- 522
            L  ++  + +  GI         + I  +P +L+K     L   ++    D        
Sbjct: 465 VLFDQYAPNFNTFGIHFATQSDR-VVITHLPFLLTKIENDLLKDSLLQHCYDLADHVKRV 523

Query: 523 -------SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
                    T+Y L   I  ++ + AC  +I  G  +   EM +++ ++ +     QC H
Sbjct: 524 HIDCNNWFETSYHLPRIITELINSKACRSAIMFGDILTKDEMYQIVTKLSQCKLPFQCAH 583

Query: 576 GRPTFIKL 583
           GRP+ + +
Sbjct: 584 GRPSIVPI 591


>gi|260890992|ref|ZP_05902255.1| DNA mismatch repair protein MutL [Leptotrichia hofstadii F0254]
 gi|260859019|gb|EEX73519.1| DNA mismatch repair protein MutL [Leptotrichia hofstadii F0254]
          Length = 691

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/346 (32%), Positives = 183/346 (52%), Gaps = 18/346 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L EK+ N IAAGE++E P+  IKE+IENSLDA+++ ++  +   G    +++DNG G
Sbjct: 4   IKILDEKVSNIIAAGEVVENPASMIKEMIENSLDAKATMIKIEVFKSGTD-VKVSDNGIG 62

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  ++  ++V+RH TSKI +  D  N++T+GFRGEAL SI AVS LT+ +R   +  G +
Sbjct: 63  MDKDDTLLSVERHATSKIKEKEDVFNLNTYGFRGEALSSIAAVSKLTITTRSENSPVGYK 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I   G  +     V+ N GT +EVRDLF+  PAR  FL+    E   I D++ + A++  
Sbjct: 123 IGCYGGVVRKFEEVSRNVGTEMEVRDLFYNTPARRKFLRKISTEYGKIRDIVLKEALSNS 182

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F+         K    ++       I ++ G+  + N  +           GY G  
Sbjct: 183 NVAFSLELDGKTTIK----TSGKGIDNTILELFGKSVLRNLKKFEY--------GYLGNV 230

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              R + +  + F+N R V+   I   +   Y   +  G+YP  ++    DP+++DVNVH
Sbjct: 231 EILRSSKDFMFTFVNNRYVKSATIERAVIDGYYTKLMKGKYPFAIIFYNTDPKEIDVNVH 290

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI---NKKGISTSSVLSKKMIS 343
           P+K  I+F N  I+ N I  +I       +++    +  L KK I+
Sbjct: 291 PSKKIIKFSNDKIVYNEIKSAIDDFFYYNDRENWQPNIDLIKKNIN 336



 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 4/249 (1%)

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
           + +N  K       T   N+  + +         D +  +    S       E       
Sbjct: 445 NVENFKKKDEYYTKTGDKNSNSENYKNTTEYRNFDTINENTENESHYKVGTFEKHVGKQF 504

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                 QI   YI+ +  + + I DQH  HER+++E+++  F + KI SQ LL P  + +
Sbjct: 505 HYDILGQIFDTYILVRRDNEMEIYDQHIIHERILYEELKDKFYNKKIESQHLLLPLKMGI 564

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E  +I E+       G   + F  + I IR +PA   + NI  +    +  ++D   
Sbjct: 565 TGIEKNIIFENIAIFRDFGFDIDEFSEDEIVIRAVPAFDFRDNIENVF---LQLLMDLKN 621

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              ++D  ENI+ +M+C G++++G+++   EM  ++R + +      C HGRP  +KL  
Sbjct: 622 EVEIKDLRENIIISMSCKGAVKAGQRLDMFEMQNMVRRIHEVGK-YTCPHGRPIIVKLSR 680

Query: 586 SDIEKLFGR 594
           +D++K+FGR
Sbjct: 681 NDLDKMFGR 689


>gi|299471543|emb|CBN80029.1| MutL protein homolog 1 [Ectocarpus siliculosus]
          Length = 1123

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/361 (27%), Positives = 164/361 (45%), Gaps = 32/361 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KL E ++N+IAAGE+++RP+ A+KEL+ENSLDA S+ +      GG    QI DNG 
Sbjct: 10  KILKLDEDVVNRIAAGEVVQRPANAVKELMENSLDAGSTSITVTAKQGGLKLLQIQDNGH 69

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+ +  D   + TFGFRGEAL SI   + +T+ S+ P +    
Sbjct: 70  GIRREDLPIVCERFTTSKLREFGDLRTMSTFGFRGEALASITHTAKVTITSKTPSSQVAY 129

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  ++        +  +P A   GT +   DLF+ +  R    KS   +   I DV
Sbjct: 130 KAKYSDGRLVAGGPGQSADPKPCAGVTGTTILAEDLFYNMDTRRRAFKSPGEQYKGILDV 189

Query: 172 IRRMAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS- 228
           + R A+ +     SFT          ++      +    I    G       VEL     
Sbjct: 190 VTRYAVHFGDRGVSFTCKKHGQPSPDLHT-PPRSSCLANIRVAFGPALSRELVELECSQA 248

Query: 229 -----------------NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
                                 +G      ++   ++   +FIN R V+   I  T+ +A
Sbjct: 249 EELLDQGADGGEVAPSKFAFKAKGLVSGADYSAKRSDFI-LFINDRLVESPSIKKTVESA 307

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y + +P   +P V L + +    +DVNVHP K  + F +   +   + Q++++ +     
Sbjct: 308 YKDVLPKNTHPFVYLGITMPSHHLDVNVHPTKREVHFLHQEELLECLRQAVEQKLAGANQ 367

Query: 332 S 332
           S
Sbjct: 368 S 368


>gi|86161626|gb|ABC86946.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 197/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  +++
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVE 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|86161634|gb|ABC86950.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 195/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N   + 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLERVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAKLS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|86161622|gb|ABC86944.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|313235516|emb|CBY10971.1| unnamed protein product [Oikopleura dioica]
          Length = 670

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 115/399 (28%), Positives = 195/399 (48%), Gaps = 11/399 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IRKLS+ +IN+IAAGE+++RP+ AIKELIENS+DA +  ++     GG   F I D+G
Sbjct: 1   MPIRKLSQDVINKIAAGEVVQRPANAIKELIENSIDAGAKSIKIKTKKGGLEMFSIEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+A  R  TSK+ +  D  +I +FGFRGEAL SI  V HLT+ S+P      
Sbjct: 61  CGIAMEDLPLAGVRFATSKLQEYTDLKDIGSFGFRGEALASISHVGHLTITSKPASQQVA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            +++  G K +    P A   GT+++V+DLF  +  R     +       I DVIR  +I
Sbjct: 121 YKLSFDGGKANGEAIPSAGKNGTLIQVKDLFHNMNMRQKSY-NPNETFAKIADVIRAYSI 179

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            Y K++F+   I  ++ ++   +   +    I +   ++  +N +       EI + G  
Sbjct: 180 HYEKLNFSLFRIDKSQTQVRSWNLP-DRKTIIEKTFSKEVSSNILTSKLTDEEIGVDGEI 238

Query: 238 GIPTFNRGNANQF-YVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              +           +FIN R ++ K I   I + Y + +P G  P V + + +  R +D
Sbjct: 239 FFTSSVYCGKKFILLIFINNRLIESKQIKQIIESIYEDFLPRGSRPWVYINITMPGRNID 298

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-THL 355
           VNVHP K  ++F +   I + I + +   +    I T +  +  ++ +F  ++      L
Sbjct: 299 VNVHPTKMEVQFLHDERIYDLIKKKMDMFL----IPTKTDRTMSVVPTFLSNHETSVIDL 354

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
            +   S  +    L  Q   +  ++     D   +   +
Sbjct: 355 NESRDSRRSDPPSLDYQHQMVRNDNTSQKIDSFLANIEE 393


>gi|86161610|gb|ABC86938.1| MLH1 [Saccharomyces cerevisiae]
 gi|86161614|gb|ABC86940.1| MLH1 [Saccharomyces cerevisiae]
 gi|86161616|gb|ABC86941.1| MLH1 [Saccharomyces cerevisiae]
 gi|86161630|gb|ABC86948.1| MLH1 [Saccharomyces cerevisiae]
 gi|207342236|gb|EDZ70057.1| YMR167Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259148748|emb|CAY81993.1| Mlh1p [Saccharomyces cerevisiae EC1118]
          Length = 769

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|86161628|gb|ABC86947.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  +++
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVE 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TSSVLSKKMISSFHQDNA 350
           VDVNVHP K  +RF +   I   I   +   ++    S     SS+ + K  S    ++ 
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELSAIDTSRTFKASSISTNKPESLIPFNDT 362

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRL 376
            ++   + +   T   E  +   N  
Sbjct: 363 IESDRNRKSLRQTQVVENSYTTANSQ 388


>gi|86161618|gb|ABC86942.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|21672810|ref|NP_660877.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008819|sp|Q8K913|MUTL_BUCAP RecName: Full=DNA mismatch repair protein mutL
 gi|21623461|gb|AAM68088.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 582

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 137/506 (27%), Positives = 242/506 (47%), Gaps = 17/506 (3%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           QI+AGE+IERPS  IKEL+ENS+DA++  ++  +   G +   + D+GFG+  +++ +A+
Sbjct: 14  QISAGEVIERPSSVIKELLENSIDAQAKNIDISVERSGLNSITVKDDGFGIEKDQLLLAI 73

Query: 73  QRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE-KIS 129
            RH TSKI+   D  NI+TFGFRGEAL SI AVS + L+S    +N    I   G    +
Sbjct: 74  SRHATSKINRLSDLDNINTFGFRGEALASIRAVSRMKLISCSQNSNIAWSIYSEGFSNHT 133

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
            ++P+A   GT + V +LF+ IP RL F+K+E+ E   I + I+++A++   ++  F   
Sbjct: 134 LLQPIAHPIGTSIIVDNLFYNIPVRLKFIKNERSEFLKIDETIKKIALSNFGINIFFKKD 193

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP-TFNRGNAN 248
           K         + N N   R+  V  +  +N  +E+ EK + ITL G+   P + +     
Sbjct: 194 KKLFVSYKAITKNNNKIHRLKTVFNQIDLNYVLEIKEKMHNITLFGWLIFPSSLSSTFKK 253

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRF 308
             Y ++N R V +  I S +  ++ E I   R    +L L +   ++D+N+HP K+ I+F
Sbjct: 254 IQYCYVNNRFVYNNLIKSAVFNSFYEIIGNKRSTSFILYLTLPSNEIDINIHPTKNEIKF 313

Query: 309 RNPTIIRNFIIQSIQKAINKKGIS-TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
               II  F+ QSI  ++ K  I   S+    K  S+  ++N   +   K  + + +  E
Sbjct: 314 HKSNIIYFFVYQSILSSLKKCKIKYISNNFFLKTHSNKCKNNNSDSLNTKLVSQIHSKYE 373

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
           K  L ++ +ST+    +      E            +  G       + Y +   ++   
Sbjct: 374 KKDLYKDVISTDLFKINSQRFLKE----------YFFSFGKLLIVFQKYYGLMYYSNTFS 423

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++    A + +   K+R    +  I  +      +  +   +  ++  + + L + G   
Sbjct: 424 LISFPLAKKIVEQYKLRSAIKNNMIP-EIFSYNFLYFITFKQNKILSNNLKLLLKFGFNL 482

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLL 513
                    ++ IP  L  +N+  LL
Sbjct: 483 -ILKEKYFFLKTIPIFLKNQNLDVLL 507


>gi|86161624|gb|ABC86945.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|86161620|gb|ABC86943.1| MLH1 [Saccharomyces cerevisiae]
 gi|151945868|gb|EDN64100.1| MutL-like protein [Saccharomyces cerevisiae YJM789]
          Length = 769

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDLLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|323303530|gb|EGA57323.1| Mlh1p [Saccharomyces cerevisiae FostersB]
          Length = 769

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDXLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|6323819|ref|NP_013890.1| Mlh1p [Saccharomyces cerevisiae S288c]
 gi|1709056|sp|P38920|MLH1_YEAST RecName: Full=DNA mismatch repair protein MLH1; AltName: Full=MutL
           protein homolog 1; AltName: Full=Post meiotic
           segregation protein 2
 gi|825572|emb|CAA89803.1| Mlh1p [Saccharomyces cerevisiae]
 gi|86161632|gb|ABC86949.1| MLH1 [Saccharomyces cerevisiae]
 gi|256270468|gb|EEU05661.1| Mlh1p [Saccharomyces cerevisiae JAY291]
 gi|285814168|tpg|DAA10063.1| TPA: Mlh1p [Saccharomyces cerevisiae S288c]
          Length = 769

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDLLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|460627|gb|AAA16835.1| Mlh1p [Saccharomyces cerevisiae]
          Length = 769

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISLIFFINNRLVTCDLLRRALNSVYSNYLPKGFRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|86161608|gb|ABC86937.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  286 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 196/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVHP K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHPTKREVRFLSQDDIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|261330774|emb|CBH13759.1| mismatch repair protein MLH1, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 887

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 107/400 (26%), Positives = 179/400 (44%), Gaps = 36/400 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I +L E +IN+IAAGE+++RPS A+KEL+ENSLDA S+ ++ V+  GG    Q+TD+
Sbjct: 1   MRGIERLPEDVINRIAAGEVVQRPSAALKELLENSLDAGSTCIQVVVQDGGLELLQVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+  +R+ TSK+   D+ +NI +FGFRGEAL SI  V+ +T+ +    +  
Sbjct: 61  GHGIRFGDLPLLCERYATSKLRAFDELNNIRSFGFRGEALCSISYVARVTVTTMRHNDTV 120

Query: 118 GAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             +      ++    +P A NPGT +    +F+    R         E + + DV+ R A
Sbjct: 121 AWRCHYVDGRMQEEPKPCAGNPGTCIRAEKMFYNAAVRRRAFSRPSEECSRVEDVVSRYA 180

Query: 177 IAYPKVSFTFSTIKSNR----YKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----- 227
           +A+P V+F+      +             + N    I Q  G +  +   E+        
Sbjct: 181 LAFPGVAFSCRRSDGSVAGVTKNCVCFPKDSNTLANIRQHWGGEVASRLCEVRCTGESPS 240

Query: 228 -----------------SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                                 + GYT   T      +   VF+N R V    I   +  
Sbjct: 241 EDNCTPESVLATSGPSGEGRFLITGYTSDITLA-SRKSYLCVFVNNRLVDSTAIRRALDA 299

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y+  +  G  P  VL + + P +VDVN+HP K  +   +  II + + + +Q A+    
Sbjct: 300 VYSGVLVRGNRPFTVLFVTVPPDRVDVNIHPTKHEVCLLDEEIIVSQLSECVQGALQASA 359

Query: 331 ISTSSVLSKK-----MISSFHQDNAPKTHLPKYATSLTNT 365
                 + +      M+       + +   P  +TS  N 
Sbjct: 360 ARRQMDIRQIHSKAVMLGDRESQRSNQPMQPHSSTSPFNP 399


>gi|157169422|ref|XP_001651509.1| DNA mismatch repair protein mlh1 [Aedes aegypti]
 gi|108878401|gb|EAT42626.1| DNA mismatch repair protein mlh1 [Aedes aegypti]
          Length = 661

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 141/551 (25%), Positives = 235/551 (42%), Gaps = 28/551 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL E ++N+IAAGEII+RP+ A+KE+IENSLDA+S+ ++ VI  GG    QI DNG G
Sbjct: 6   ICKLDEVVVNRIAAGEIIQRPANALKEMIENSLDAKSTSIQIVIKYGGLKSLQIQDNGTG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+HL + ++        +
Sbjct: 66  IRRDDLAIVCERFTTSKLQKFEDLSSIETYGFRGEALASISHVAHLIITTKTKDEKCAFK 125

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                 K+   ++P A N GT + V DLF+ +P R   LK+   E   I+DV+ + A+  
Sbjct: 126 ATYEDGKLKGDIKPCAGNQGTQITVEDLFYNVPMRKQALKAPNEEFQKISDVVSKYAVHN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ--GYT 237
           P+  F       N                I+ + G     + +++    + + LQ  G+ 
Sbjct: 186 PQTGFMLKKFGENAT--IRTQAKSTVETNIAMIYGSSISKSLLKIAIDDDILQLQVNGFV 243

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
               FN      F +FIN R V    I   I   Y+  +P G  P V L +E++P  VDV
Sbjct: 244 TNVNFN-LKKGMFLLFINHRAVDSTNIKKAIDQIYSLYLPKGSAPFVYLSIELNPNNVDV 302

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           NVHP K  + F +   I   I +++++ +   G + S     + +     + A  + L  
Sbjct: 303 NVHPTKHEVHFLHEEEIIEKIKEAVERVL--LGGNASRTFYTQALLPGAPEPAEVSKL-- 358

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
                T  + KL  +  R S ND         +   +        + +         +  
Sbjct: 359 --NDSTGDKPKLDYKFVRTSHNDQKLDKFFGINLSRNASMNESTNNNEDLGGPLLTPKRE 416

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
             ++ T    +++     E      +R   +             +I        +     
Sbjct: 417 KPTKETKLTSVLNLRKTVEDTCDRNLRTIISELAFVGVIDRHRVLIQYDTKMFLVATRVL 476

Query: 478 -EDL--HRLGIKAERFG----PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
            E+L    L    E        N + +RE+ ++L+ ++      +      D      L 
Sbjct: 477 FEELCYQMLLFNFENLDSMAFTNPLPLREL-SMLALQDAESGWTE------DDGPEEELA 529

Query: 531 DRIENILATMA 541
           +RI  IL + A
Sbjct: 530 ERIVEILISKA 540


>gi|325182796|emb|CCA17251.1| mismatch repair endonuclease pms1 putative [Albugo laibachii Nc14]
          Length = 667

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 130/665 (19%), Positives = 255/665 (38%), Gaps = 95/665 (14%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L    + +I +G+ I    IA+KELIEN+LDA ++++E      GK+  ++ DNG G+
Sbjct: 6   QALDVGDVQRICSGQSIPDAPIALKELIENALDACATQIEIRFVEHGKNAIEVVDNGSGI 65

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFR----------------GEALPSIGAVS- 104
             E     V+++ TSKI+  +D   + +FGFR                GEAL S+   + 
Sbjct: 66  PIENHSTLVKKNHTSKIAAFEDIETVSSFGFRYVLSPFLKLAITRENSGEALSSLCHSAL 125

Query: 105 HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMN-PGTIVEVRDLFFTIPAR-LNFLKSEQ 162
            LT+ ++  Q++ G  +          +       GT V        +P R  +F ++ +
Sbjct: 126 ELTICTKTTQDSIGTLLKYDASGNLIEKSAKARGIGTSVT------PLPVRCRDFHRNIK 179

Query: 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPER-------ISQVIGE 215
              +    VI   A+    V F  S     R ++   + +    +R       I+ V G 
Sbjct: 180 KYYSKSLKVIHTYALISLNVKFIVSNRTGTRQQIVLSTESSARRDRLEAMKISIASVFGL 239

Query: 216 DFINNAVELNEKSNEITL---QGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRT 270
            F    +               G+        G +  ++ +++INGR V    +   I  
Sbjct: 240 KFFKTLIPFQMDETSTHGRSAYGFISQIGIGAGKSDNDRQFIYINGRPVDAPKLNKAIHQ 299

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI---- 326
            + +   + +Y   V+  ++  + +D+NV P K  + FR    +   +   + +      
Sbjct: 300 VWRQF-EVRQYANYVIDFQVPSQDLDLNVTPDKRTVFFRKENEMMESLQTQLLQIFEPAK 358

Query: 327 -----------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ--------- 366
                       +   +T++ +  K I    ++  P +  P    +    +         
Sbjct: 359 RIFTVQPLTEEKRSTPNTTTPIPLKAILRSPEEVRPTSVTPNDFETEIRPRKRAKIGTIE 418

Query: 367 --EKLFLQE----------NRLSTNDLLPSDDPTYSEDNDPVEES----------EATHY 404
             EK++  E                          S    P+EE+          +   +
Sbjct: 419 ALEKVYTSEIVTGWTLSALRETRKRYFKEVALGKVSGREKPLEEASIDALLHRVFQKQDF 478

Query: 405 QLGIACAQIHQNYIISQTTD-GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           Q      Q +  +II++     L I+DQHA+ E+  +E +++         Q L+ P+ +
Sbjct: 479 QSMEIIGQFNLGFIIAKYNTKDLFIIDQHASDEKFRYESLQRTTI---FHHQPLVHPQSL 535

Query: 464 DLLEGECALIMEHDEDLHRLGIKAE---RFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
            L   E  +I++H +   + G   E   +   N + +  +P     +   + L +++  +
Sbjct: 536 SLSSTEEMIILDHLQVFRKNGFTFEVDAQAQSNKLRLLSLPLSKETQFGVKDLFELVSLL 595

Query: 521 IDSST--TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +        ++ +ILA+ AC  S+  G  +   EM R++ ++        C HGRP
Sbjct: 596 QEYPSNVESLRLSKVASILASRACRSSVMIGTALSKAEMTRIVHQLTGLDQPWNCPHGRP 655

Query: 579 TFIKL 583
           T   L
Sbjct: 656 TMRHL 660


>gi|72393427|ref|XP_847514.1| mismatch repair protein MLH1 [Trypanosoma brucei TREU927]
 gi|62359612|gb|AAX80045.1| mismatch repair protein MLH1 [Trypanosoma brucei]
 gi|70803544|gb|AAZ13448.1| mismatch repair protein MLH1 [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 887

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/400 (26%), Positives = 179/400 (44%), Gaps = 36/400 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I +L E +IN+IAAGE+++RPS A+KEL+ENSLDA S+ ++ V+  GG    Q+TD+
Sbjct: 1   MRGIERLPEDVINRIAAGEVVQRPSAALKELLENSLDAGSTCIQVVVQDGGLELLQVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+  +R+ TSK+   D+ +NI +FGFRGEAL SI  V+ +T+ +    +  
Sbjct: 61  GHGIRFGDLPLLCERYATSKLRAFDELNNIRSFGFRGEALCSISYVARVTVTTMRHNDTV 120

Query: 118 GAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             +      ++    +P A NPGT +    +F+    R         E + + DV+ R A
Sbjct: 121 AWRCHYVDGRMQEEPKPCAGNPGTCIRAEKMFYNAAVRRRAFSRPSEECSRVEDVVSRYA 180

Query: 177 IAYPKVSFTFSTIKSNR----YKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----- 227
           +A+P V+F+      +             + N    I Q  G +  +   E+        
Sbjct: 181 LAFPSVAFSCRRSDGSVAGVTKNCVCFPKDSNTLANIRQHWGGEVASRLCEVRCTGESPS 240

Query: 228 -----------------SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                                 + GYT   T      +   VF+N R V    I   +  
Sbjct: 241 EDNCTPESVLATSGPSGEGRFLITGYTSDITLA-SRKSYLCVFVNNRLVDSTAIRRALDA 299

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y+  +  G  P  VL + + P +VDVN+HP K  +   +  II + + + +Q A+    
Sbjct: 300 VYSGVLVRGNRPFTVLFVTVPPDRVDVNIHPTKHEVCLLDEEIIVSQLSECVQGALQASA 359

Query: 331 ISTSSVLSKK-----MISSFHQDNAPKTHLPKYATSLTNT 365
                 + +      M+       + +   P  +TS  N 
Sbjct: 360 ARRQMDIRQIHSKAVMLGDRESQRSNQPMQPHSSTSPFNP 399


>gi|13517948|gb|AAK29067.1|AF346620_1 MLH1 [Trypanosoma brucei]
          Length = 887

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/400 (26%), Positives = 179/400 (44%), Gaps = 36/400 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I +L E +IN+IAAGE+++RPS A+KEL+ENSLDA S+ ++ V+  GG    Q+TD+
Sbjct: 1   MRGIERLPEDVINRIAAGEVVQRPSAALKELLENSLDAGSTCIQVVVQDGGLELLQVTDD 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   ++P+  +R+ TSK+   D+ +NI +FGFRGEAL SI  V+ +T+ +    +  
Sbjct: 61  GHGIRFGDLPLLCERYATSKLRAFDELNNIRSFGFRGEALCSISYVARVTVTTMRHNDTV 120

Query: 118 GAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             +      ++    +P A NPGT +    +F+    R         E + + DV+ R A
Sbjct: 121 AWRCHYVDGRMQEEPKPCAGNPGTCIRAEKMFYNAAVRRRAFSRPSEECSRVEDVVSRYA 180

Query: 177 IAYPKVSFTFSTIKSNR----YKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----- 227
           +A+P V+F+      +             + N    I Q  G +  +   E+        
Sbjct: 181 LAFPSVAFSCRRSDGSVAGVTKNCVCFPKDSNTLANIRQHWGGEVASRLCEVRCTGESPS 240

Query: 228 -----------------SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                                 + GYT   T      +   VF+N R V    I   +  
Sbjct: 241 EDNCTPESVLATSGPSGEGRFLITGYTSDITLA-SRKSYLCVFVNNRLVDSTAIRRALDA 299

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y+  +  G  P  VL + + P +VDVN+HP K  +   +  II + + + +Q A+    
Sbjct: 300 VYSGVLVRGNRPFTVLFVTVPPDRVDVNIHPTKHEVCLLDEEIIVSQLSECVQGALQASA 359

Query: 331 ISTSSVLSKK-----MISSFHQDNAPKTHLPKYATSLTNT 365
                 + +      M+       + +   P  +TS  N 
Sbjct: 360 ARRQMDIRQIHSKAVMLGDRESQRSNQPMQPHSSTSPFNP 399


>gi|255079254|ref|XP_002503207.1| DNA mismatch repair and recombination [Micromonas sp. RCC299]
 gi|226518473|gb|ACO64465.1| DNA mismatch repair and recombination [Micromonas sp. RCC299]
          Length = 640

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 171/344 (49%), Gaps = 15/344 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L+++++N++AAGE+I RP+ A+KE++ENSLDA ++ +   +  GG    Q+TDNG 
Sbjct: 5   PIHRLADEVVNRVAAGEVIHRPASALKEILENSLDAGATSIVVTVKDGGNKLLQVTDNGC 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +RH TSK+S  +D S + TFGFRGEAL SI  V++LT+ +         
Sbjct: 65  GIREADLPILCERHTTSKLSKFEDLSAMSTFGFRGEALASISFVANLTVTTMTRGATHAL 124

Query: 120 QIAISGEKIS--SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           + +     +     RP A NPGT + V +LF+ +P R   LKS   E   + DV++R A 
Sbjct: 125 KASYCDGALDGGGARPCAGNPGTTITVENLFYNVPTRRKALKSPHEEFAKVLDVVQRYAS 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN---------EKS 228
           +   V+FT       R  ++  +   +  +R+  + G         +          +++
Sbjct: 185 SRTDVAFTCRKHGEARPSLH-CAVTPHRIDRLRAIYGSQVARELTPMTLTGDADGDGDRA 243

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
            E ++        ++        +FIN R V+   +       Y+  +P    P   L L
Sbjct: 244 AEYSVDALVSTAGYHSRRTTFI-LFINDRLVECAPLRRACEAVYSAILPKAEKPFAYLSL 302

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
            + P  +DVNVHP K  + F     +   + +++++ + +   S
Sbjct: 303 RLPPHTLDVNVHPTKREVAFLRQDEVVERVQRALERRLVEANGS 346


>gi|325183545|emb|CCA18006.1| DNA mismatch repair protein putative [Albugo laibachii Nc14]
          Length = 778

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 225/567 (39%), Gaps = 58/567 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS +++N+IAAGE+I RP  A+KEL+ENS+DA ++ +   I+ GG    QI DNG 
Sbjct: 8   RIKRLSAQVVNRIAAGEVIHRPENAVKELLENSIDAGATNISITISQGGLKLIQIQDNGK 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D   I +FGFRGEAL SI  V+H+T+ S+P       
Sbjct: 68  GILRDDLEIVCERFTTSKLQKFEDLCWIQSFGFRGEALASISHVAHVTITSKPAAQECAY 127

Query: 120 QIAISGEKISSVR--------PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K  +          P A   GT++ + DLF+ +  R   LK+   +   I D+
Sbjct: 128 RAKYRDGKPIATCPGSNPDPAPCAGKDGTLIVIEDLFYNLSTRRQALKNAAEQYQRILDI 187

Query: 172 IRRMAIAY--PKVSFTFSTIKSNRYKMNFQ--STNGNFPERISQVIGEDFINNAVELNEK 227
           +++ AI +   K+ F     +     +N    ++ G   + +  + G       +     
Sbjct: 188 VQKYAIHFASKKIGFVCRKHQGMNCSLNTVQAASLGKTRQVVQSIFGTKVACELLSFQHT 247

Query: 228 SNE----------ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                          ++G      F+       + FIN R V    +       Y+  IP
Sbjct: 248 VVMDGITTATLEPCRVEGLISHANFS-LKRGHIFFFINHRLVSCGALKRACEYMYSIHIP 306

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
              +P + L L +  + +DVNVHP K  + F     I   I+++++K I K   S + +L
Sbjct: 307 KQCHPFLYLSLIMPSQNIDVNVHPTKQEVHFLYEEEIVESIVKALEKEIKKNDQSRTFLL 366

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
                                   ++  + K     +  S      +  PT   + D   
Sbjct: 367 Q------------------PIRNLMSQDETKASEDLSTKSEKTKGSTCTPTPDTNGDESS 408

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           +       L        + Y   +T + LV  D          EK R   +   ++S   
Sbjct: 409 QKSWISIDLSAKQVPHSRKYDALKTPNRLVRTDPRTIS----IEKYRVTSSQKTLSSSIP 464

Query: 458 LTPEIIDL-----LEGECALIMEHDEDLHRLGIKAERFGPNAIAIR--EIPAILSKKNIP 510
            + +   L          +  ++  ++       AE      I  +   I A    + +P
Sbjct: 465 SSCKKQRLETPLKTPDAISARLDF-DEFED---DAEPESETKIESQGSSIGAPTQNRTMP 520

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENIL 537
             ++++I +I        ++   E+  
Sbjct: 521 TSVQNLIQQIQAKRNAQLVKLFREHTF 547


>gi|330802334|ref|XP_003289173.1| hypothetical protein DICPUDRAFT_55923 [Dictyostelium purpureum]
 gi|325080749|gb|EGC34291.1| hypothetical protein DICPUDRAFT_55923 [Dictyostelium purpureum]
          Length = 805

 Score =  283 bits (725), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 196/381 (51%), Gaps = 18/381 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +LS +++N+I+AGE+I+RPS A+KEL+ENSLDA+S+ +   +  GG    QI DNG 
Sbjct: 37  KIHRLSPEVVNKISAGEVIQRPSNALKELLENSLDAKSTNIIITVKDGGMKLLQIQDNGT 96

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK++  +D   I +FGFRGEAL SI  VSHL + ++   +N   
Sbjct: 97  GIRLDDMEIVCERFTTSKLTKFEDLRKIASFGFRGEALSSISHVSHLKIQTKTADSNCAY 156

Query: 120 QIAISGEKI----------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           +      K+             +P A   GT + V DLFF  P+R + LK+   E + I+
Sbjct: 157 RACYFNGKLSPSNPNDPSSCDPKPCAGVNGTQITVEDLFFNTPSRKSVLKNFSEEHSRIS 216

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEK 227
            +I++ AI  PKV FT   +     ++   S N    + IS + G D   +   + L   
Sbjct: 217 QLIKKYAINNPKVGFTLKKLGEPTPEV-ITSGNLTEQDVISSLFGNDLAKDLKEITLKSD 275

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
             E  ++       +N    N   +F+NGR V  K +   +   Y++ +P G +P + L 
Sbjct: 276 KFEFDVKALITNTNYNSKKTNFI-LFVNGRLVDSKNLKVGLEQIYSKYLPKGTHPFMFLR 334

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           L + P+ +DVN+HP KS ++  +   I   I Q I + ++    S S   S +++     
Sbjct: 335 LLVAPKNIDVNIHPTKSEVKILHEDQIIEIIQQKIDEELS--VSSNSKTFSTQVLLPGFD 392

Query: 348 DNAPKTHLPKYATSLTNTQEK 368
           ++   +   K  TS T +Q K
Sbjct: 393 NDQQTSSQKKQKTSATASQTK 413


>gi|86161612|gb|ABC86939.1| MLH1 [Saccharomyces cerevisiae]
          Length = 769

 Score =  283 bits (723), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 195/397 (49%), Gaps = 11/397 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KE++ENS+DA ++ ++ ++  GG    QITDNG 
Sbjct: 4   RIKALDASVVNKIAAGEIIISPVNALKEMMENSIDANATMIDILVKEGGIKVLQITDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+   +D S I T+GFRGEAL SI  V+ +T+ ++  ++    
Sbjct: 64  GINKADLPILCERFTTSKLQKFEDLSQIQTYGFRGEALASISHVARVTVTTKVKEDRCAW 123

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +++ +  K+  S +PVA   GT + V DLFF IP+RL  L+S   E + I DV+ R AI 
Sbjct: 124 RVSYAEGKMLESPKPVAGKDGTTILVEDLFFNIPSRLRALRSHNDEYSKILDVVGRYAIH 183

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN----AVELNEKSNEITLQ 234
              + F+      + Y ++ + +     +RI  V  +   +N     +   E  N  ++ 
Sbjct: 184 SKDIGFSCKKFGDSNYSLSVKPSY-TVQDRIRTVFNKSVASNLITFHISKVEDLNLESVD 242

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G      F    +     FIN R V    +   + + Y+  +P G  P + L + IDP  
Sbjct: 243 GKVCNLNFISKKSISPIFFINNRLVTCDPLRRALNSVYSNYLPKGNRPFIYLGIVIDPAA 302

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN-APKT 353
           VDVNVH  K  +RF +   I   I   +   ++   I TS       IS+   ++  P  
Sbjct: 303 VDVNVHLTKREVRFLSQDEIIEKIANQLHAELS--AIDTSRTFKASSISTNKPESLIPFN 360

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +  + ++   ++ +  + N  L       +
Sbjct: 361 DTIESDRNRKSLRQAQVVENSYTTANSQLRKAKRQEN 397


>gi|328851685|gb|EGG00837.1| hypothetical protein MELLADRAFT_111529 [Melampsora larici-populina
           98AG31]
          Length = 724

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 114/396 (28%), Positives = 186/396 (46%), Gaps = 16/396 (4%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
            L E ++N+IAAGEII RPS A+KEL+EN +DA +  V+  +  GG    QI DNG G+ 
Sbjct: 2   PLEESVVNRIAAGEIIVRPSNAVKELLENCIDAGAKSVKITVKEGGVKMLQIQDNGSGIR 61

Query: 65  SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            E++ +  +R  TSKI   DD +++ T+GFRGEAL SI  V+HLT+ ++    N G +  
Sbjct: 62  KEDLAILCERFTTSKIRNFDDLTSLTTYGFRGEALASISHVAHLTVATKTRDANVGWKAQ 121

Query: 123 ISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
            S  +++          +  A N GT++ V D+F+ +P R   L+S   E   I DV+ +
Sbjct: 122 YSDSRLAPLKVGGPVEPQACAGNDGTVITVEDMFYNVPQRRKALQSGAEEYRKIVDVVSK 181

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
            AI    V+ +     S    +N  +T     E I ++  E      + L  + +E   +
Sbjct: 182 YAIHNEGVAISCKKAGSQTPDVNTSATATTL-ETIGRLYSEQLKKELIRLQFEDDEFECK 240

Query: 235 --GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
             GY     +         +FIN R V    +   +   Y   +P G +  + + LEI+P
Sbjct: 241 VDGYCSGADYTLKKPVTL-IFINHRLVDCSPLRKALEITYTPILPKGAFGFIYISLEIEP 299

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
            +VD NVHP K  +RF N   I   I + +   +  +  S S  +      +       +
Sbjct: 300 SKVDPNVHPNKKEVRFLNEDEIIEKICEKLNSLLAGRNSSRSFQVQSMGFRNRDVSQRDR 359

Query: 353 THLPKYATSLTN--TQEKLFLQENRLSTNDLLPSDD 386
                 ++S +     +KL   ++++ T D     +
Sbjct: 360 ADEMVSSSSKSTKLPPQKLVRSDHQIQTLDSFVRPN 395


>gi|84784053|gb|ABC61990.1| MLH1-like protein 2 [Trichomonas vaginalis]
          Length = 793

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 191/385 (49%), Gaps = 9/385 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL + +I++IAAGEII  P   +KEL+ENS+DA +  ++  I  GG    QI D+G G
Sbjct: 25  IMKLDDSVIHKIAAGEIITEPVNVVKELLENSIDAVADHIQINIENGGYGLIQIKDDGTG 84

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++P+A  RH TSK+   +D   I TFGFRGEAL S+   +H+T+ ++  Q   G  
Sbjct: 85  IRKSDMPLACARHTTSKLHKYNDLRTIGTFGFRGEALFSMSCCAHVTITTKTFQEEYGYS 144

Query: 121 IAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+SS  + +A   GT VEVRDLF+    RLN       +   I +V+ + A+ Y
Sbjct: 145 AEYSDGKMSSDLKNIAATEGTTVEVRDLFYNNRLRLNARPKATTDAKKIYEVVAKYAVTY 204

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF  S+      +    S   +  + +  +  ED  +           +T   +   
Sbjct: 205 PELSFVLSSNGKEMLQTYGGSKTEDVLKLLFDI--EDTKSIFTLSFSPYPNVTATMFLSA 262

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+F+        +FINGR VQ +    +I TAY+ET+  G  P   ++L +    V+VNV
Sbjct: 263 PSFS-SKKKMXAIFINGRLVQCQSFKHSIDTAYSETVGSGVSPFYFIILVMPQENVEVNV 321

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  ++F     I   I + I++++ ++  S   +L K+     H+ +   T  P+  
Sbjct: 322 HPSKKTVKFIGEVEIGEEIHKKIKESLEQRRGSRPVMLMKERT---HKTSQKPTDSPQID 378

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPS 384
             ++   +K       LS  D    
Sbjct: 379 KFISQISQKPAEDAPPLSQRDKARQ 403


>gi|167522809|ref|XP_001745742.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776091|gb|EDQ89713.1| predicted protein [Monosiga brevicollis MX1]
          Length = 982

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 176/372 (47%), Gaps = 16/372 (4%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
            A +II+RP+ AIKE++ENSLDA S+ V   +  GG  F QI DNG G+  E++ +  +R
Sbjct: 89  RASQIIQRPANAIKEMLENSLDAGSTSVTITVKQGGIKFLQIQDNGHGINKEDMDIVCER 148

Query: 75  HCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS-- 130
             TSK+S  +D   I T+GFRGEAL SI  V+HL+++++ P +      +    K+ +  
Sbjct: 149 FTTSKLSAYEDLQTIATYGFRGEALASISHVAHLSIITKTPTSPCAYSASYRDGKMVAER 208

Query: 131 ------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
                  +P A N GT + V +LF+ + AR   LK+   E N I DV+ R AI       
Sbjct: 209 PDKPAAPKPCAGNTGTQITVEELFYNVQARRRALKNYNDELNRIVDVVSRYAIHNSGAGL 268

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL--QGYTGIPTF 242
           T          +   ++ G+  + I  V G       +E+  + N++    +GY   P +
Sbjct: 269 TLKKFGEATALVRTTAS-GSTIDNIRAVYGNAIAQELIEIKREDNDLNFKLEGYMTNPNY 327

Query: 243 NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPA 302
           N        +FIN R+V+   I   I   Y+  +P G +    L L I P  VDVNVHP 
Sbjct: 328 N-TKKQTLILFINHRSVRSSTIKKAIDEVYSAYLPRGMHSFAYLSLLIKPELVDVNVHPT 386

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           K  + F N   I   I  ++ +A+   G +TS     + +       + K      A+  
Sbjct: 387 KHEVHFLNEEEIVQSIAVAVSEAL--LGSNTSRTFQTQTLLPGAASLSSKPESAPVASQR 444

Query: 363 TNTQEKLFLQEN 374
           T   ++    E 
Sbjct: 445 TRRSQRAVAAEE 456


>gi|123464038|ref|XP_001317043.1| DNA mismatch repair protein [Trichomonas vaginalis G3]
 gi|121899767|gb|EAY04820.1| DNA mismatch repair protein, putative [Trichomonas vaginalis G3]
          Length = 775

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 191/385 (49%), Gaps = 9/385 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL + +I++IAAGEII  P   +KEL+ENS+DA +  ++  I  GG    QI D+G G
Sbjct: 7   IMKLDDSVIHKIAAGEIITEPVNVVKELLENSIDAVADHIQINIENGGYGLIQIKDDGTG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++P+A  RH TSK+   +D   I TFGFRGEAL S+   +H+T+ ++  Q   G  
Sbjct: 67  IRKSDMPLACARHTTSKLHKYNDLRTIGTFGFRGEALFSMSCCAHVTITTKTFQEEYGYS 126

Query: 121 IAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              S  K+SS  + +A   GT VEVRDLF+    RLN       +   I +V+ + A+ Y
Sbjct: 127 AEYSDGKMSSDLKNIAATEGTTVEVRDLFYNNRLRLNARPKATTDAKKIYEVVAKYAVTY 186

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P++SF  S+      +    S   +  + +  +  ED  +           +T   +   
Sbjct: 187 PELSFVLSSNGKEMLQTYGGSKTEDVLKLLFDI--EDTKSIFTLSFSPYPNVTATMFLSA 244

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P+F+        +FINGR VQ +    +I TAY+ET+  G  P   ++L +    V+VNV
Sbjct: 245 PSFS-SKKKMNAIFINGRLVQCQSFKHSIDTAYSETVGSGVSPFYFIILVMPQENVEVNV 303

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K  ++F     I   I + I++++ ++  S   +L K+     H+ +   T  P+  
Sbjct: 304 HPSKKTVKFIGEVEIGEEIHKKIKESLEQRRGSRPVMLMKERT---HKTSQKPTDSPQID 360

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPS 384
             ++   +K       LS  D    
Sbjct: 361 KFISQISQKPAEDAPPLSQRDKARQ 385


>gi|50548393|ref|XP_501666.1| YALI0C10032p [Yarrowia lipolytica]
 gi|49647533|emb|CAG81973.1| YALI0C10032p [Yarrowia lipolytica]
          Length = 656

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 197/419 (47%), Gaps = 29/419 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +LS   INQIAAGEI+  P  A+KELIEN++DA ++R++ +   GG    Q+TDNG G
Sbjct: 2   IHQLSSTTINQIAAGEIVVGPQNALKELIENAIDAAATRIDVITKDGGVKLLQVTDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R CTSKI   DD   + +FGFRGEAL SI  VSH+T++++       ++
Sbjct: 62  IAPDDLKLLCRRWCTSKIDTHDDLRTLTSFGFRGEALASISHVSHVTVITKLRSEPAASR 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +IS     A N GT + V+DLFF  P RL  L ++        DV+ R  I   
Sbjct: 122 AKYELGEISEQALQAGNTGTQITVQDLFFNTPQRLRAL-NKADCHTKCVDVVSRYGIHND 180

Query: 181 --KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL----- 233
             + SF      S  + +      G+  +RI  V G     + VE+ + ++         
Sbjct: 181 SVEFSFRRQNDSSMLFTLK-----GSKRDRIRVVYGSRVSGSLVEVEDDTDNADESVIST 235

Query: 234 ----------QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPV 283
                     +     P ++   +    +FIN R V  + I   +   Y+  +P   +P 
Sbjct: 236 LSNIGLSRAPELLISNPNYSNTKSTFI-IFINNRLVSCEPIRKALVAVYSRYLPTKAFPF 294

Query: 284 VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST-SSVLSKKMI 342
           V L L IDP  +DVNVHP K  +RF +   I +F+   +   ++K   S    V+  K +
Sbjct: 295 VYLSLFIDPENLDVNVHPTKQEVRFLHQAEIVDFLSNLVDDTLSKIDESRVFDVVDAKKL 354

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
           S+ H+ + P+   P        +Q  L  ++ RL+    +        + ++P    E 
Sbjct: 355 STAHKPSNPQ--YPHSQNRTDYSQMHLPFKKVRLNETGTVDLSQFKSRDRDEPRVREEP 411


>gi|71651658|ref|XP_814502.1| mismatch repair protein MLH1 [Trypanosoma cruzi strain CL Brener]
 gi|70879480|gb|EAN92651.1| mismatch repair protein MLH1, putative [Trypanosoma cruzi]
          Length = 858

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/394 (27%), Positives = 178/394 (45%), Gaps = 34/394 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS+ ++N+IAAGE+++RPS A+KEL+EN+LDA S+ ++ ++  GG    Q+TD+G 
Sbjct: 3   RIKRLSDNVVNRIAAGEVVQRPSAALKELLENALDAGSTFIQVLVRDGGLGLLQVTDDGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP----QN 115
           G+  +++P+  +R+ TSK+   +D S I +FGFRGEAL SI  VS +T+ +       + 
Sbjct: 63  GIHRDDLPLLCERYATSKLRSFEDLSRITSFGFRGEALSSISYVSRVTVTTMRRVDKDEA 122

Query: 116 NTGA----QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           ++G        + G       P A NPGT + V  +F+    R   L     E + I  +
Sbjct: 123 SSGTLAWRCQYLDGAMQGEPTPCAGNPGTSIRVEKMFYNSAVRRRALNRPSEEYSRIVAL 182

Query: 172 IRRMAIAYPKVSFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---- 226
           I R A+A+P V F+      S      F   + +    I    G    ++  EL      
Sbjct: 183 ISRYALAFPHVGFSCRREEGSGGKAEVFFPKDSSSLANIRLFHGPAIASHLHELKCVEAG 242

Query: 227 ----------------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                             +   + GYT        N     +F+N R V+   I   I T
Sbjct: 243 AGGGSPETVLAKGGEAGEDCFLITGYTSGMALLNRNP-YLCIFVNNRLVESAVIKRAIDT 301

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y+  +  G  P  VL + I P +VDVN+HP K  +   +  II   + +S++ A+ +  
Sbjct: 302 VYSGILTGGNRPFTVLFITIPPDRVDVNIHPTKHEVCLLDEEIIVAQLSESVRLAVMESA 361

Query: 331 ISTSSVLSK--KMISSFHQDNAPKTHLPKYATSL 362
                         ++   D       P    S 
Sbjct: 362 ARRQLDTRHILSKAAALAGDRGAHVSQPSPLPSS 395


>gi|301153985|gb|ADK66306.1| mismatch repair protein MLH1 [Hordeum vulgare subsp. vulgare]
          Length = 728

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 182/379 (48%), Gaps = 10/379 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+R S A+++L+ENS+DA+SS +   +  GG    Q++D+G G
Sbjct: 20  IRRLEESVVNRIAAGEMIQRTSSAVQDLVENSIDADSSTISVTVKDGGPKLIQVSDDGHG 79

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++P+  +RH TSK+S  +D   I + GFRGEAL S+  V H+T+ +       G +
Sbjct: 80  IRCEDLPILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQLHGYR 139

Query: 121 IAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++     + +  +P A   GT + V +LF+ + AR   L++   +   I D I R A+ +
Sbjct: 140 VSYRDGVMENDPKPCAAVKGTQIMVENLFYNMVARRKTLQNSNDDYPKIVDFISRFAVHH 199

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-----ITLQ 234
             V+F+     +NR  ++  ST+    + I  V G   + + +E+             + 
Sbjct: 200 INVNFSCRKHGANRADVHSGSTSSRL-DAIRNVYGASVVRDLMEIQVSDENAVDEIFKMD 258

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+     +         +FIN R V    +       Y+  +P    P + + + + P  
Sbjct: 259 GFISNANYVAKKTTMI-LFINDRLVDCTSLKRATEFVYSAILPQASKPFIYMSINLPPEH 317

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVN+HP K  +   N   I   I  +I++ +     +          S+  Q N  K  
Sbjct: 318 VDVNIHPTKKEVSLLNQERIIEKIKDAIEEKLVNCNNTRIFQTQALNPSALTQANTRKDM 377

Query: 355 LPKYATSLTNTQEKLFLQE 373
             + +T      +K+ + +
Sbjct: 378 GTEVSTPTGEKSQKIPVSQ 396


>gi|328877002|gb|EGG25365.1| MutL DNA mismatch repair protein [Dictyostelium fasciculatum]
          Length = 1199

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 180/375 (48%), Gaps = 16/375 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KLS  +IN+I+AGE+I+RPS A+KELIENSLDA+S+ ++  +  GG    QI DNG 
Sbjct: 65  KIQKLSIDVINRISAGEVIQRPSNALKELIENSLDAQSTVIKVTVKDGGLKLLQIQDNGS 124

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D   I TFGFRGEAL SI  VSHL ++++   +N   
Sbjct: 125 GIKKDDLDIVCERFTTSKLQKFEDLRKIETFGFRGEALSSISHVSHLKILTKTADSNCAY 184

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   +  K++          +P A   GT +   DLFF +PAR   L++   E   + D+
Sbjct: 185 RAYYADGKLAPSTAGDTIDPKPCAGVNGTQITSEDLFFNVPARKKVLRNILEEHARVVDL 244

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINN--AVELNEKS 228
           +R+ AI   KVSF       +   +  Q   G    E IS + G +       +  +   
Sbjct: 245 VRKYAIFNSKVSFILKKADISTPDVFTQGGEGTTEKEVISLIYGSEIAKELKELSSSNDK 304

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
            E  + G       +        +FIN R V  + +   +   Y + +  G YP + + L
Sbjct: 305 LEYKMTGLFSTTNLSSKKPIFI-LFINNRLVDCRNLKLGLEQLYTKYLSKGAYPFIFVRL 363

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
            ++PR VDVN+HP KS +RF     I   I + +   +N   +  S    +    +    
Sbjct: 364 SLNPRNVDVNIHPTKSEVRFLYEDQIIELIQKVVDTELNLSIL--SKTFPQASDGAIPDS 421

Query: 349 NAPKTHLPKYATSLT 363
                       +++
Sbjct: 422 MPDGPSFSNTNNNIS 436


>gi|322826071|gb|EFZ30844.1| mismatch repair protein MLH1, putative [Trypanosoma cruzi]
          Length = 864

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/394 (27%), Positives = 177/394 (44%), Gaps = 34/394 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS+ ++N+IAAGE+++RPS A+KEL+EN+LDA S+ ++ ++  GG    Q+TD+G 
Sbjct: 3   RIKRLSDNVVNRIAAGEVVQRPSAALKELLENALDAGSTFIQVLVRDGGLGLLQVTDDGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP----QN 115
           G+  +++P+  +R+ TSK+   +D S I +FGFRGEAL SI  VS +T+ +       + 
Sbjct: 63  GIHRDDLPLLCERYATSKLRSFEDLSRITSFGFRGEALSSISYVSRVTVTTMRRVDKDEA 122

Query: 116 NTGA----QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           ++G        + G       P A NPGT + V  +F+    R   L     E + I  +
Sbjct: 123 SSGTLAWRCQYLDGAMQGEPTPCAGNPGTSIRVEKMFYNSAVRRRALNRSSEEYSRIVAL 182

Query: 172 IRRMAIAYPKVSFTFST-IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---- 226
           I R A+A+P V F+      S      F   + +    I    G    ++  EL      
Sbjct: 183 ISRYALAFPHVGFSCRREEGSGGKAEVFFPKDSSSLANIRLFHGPAIASHLHELKCVEAG 242

Query: 227 ----------------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                                 + GYT        N     +F+N R V+   I   I T
Sbjct: 243 AGSGSPETVLAKRGEAGEECFLITGYTSGMALLNRNP-YLCIFVNNRLVESAVIKRAIDT 301

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y+  +  G  P  VL + I P +VDVN+HP K  +   +  II   + +S++ A+ +  
Sbjct: 302 VYSGILTGGNRPFTVLFITIPPDRVDVNIHPTKHEVCLLDEEIIVAQLSESVRLAVMESA 361

Query: 331 ISTSSVLSK--KMISSFHQDNAPKTHLPKYATSL 362
                         ++   D       P    S 
Sbjct: 362 ARRQLDKRHILSKAAALAGDRGAHVSQPSPLPSS 395


>gi|324506169|gb|ADY42642.1| MutL protein 1 [Ascaris suum]
          Length = 707

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 177/366 (48%), Gaps = 18/366 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L + ++N+IAAGE+I RP+ AIKELIEN+LDA ++ +      GG    ++ DNG 
Sbjct: 3   RIARLPDDVVNRIAAGEVIVRPANAIKELIENALDANATEIIVTARNGGLDLIRVQDNGN 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E++ +   R  TSK+   +D  N+ TFGFRGEAL S+  V+HL+++SR   +    
Sbjct: 63  GISKEDMRIVCDRFTTSKLRKFEDLENMSTFGFRGEALASLSHVAHLSIISRTADSLCAH 122

Query: 120 QIAISGEKISSVRP-VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
               +  KI S     A   GT V    LF+  P+R   LK    E N I DVI R AI 
Sbjct: 123 CAEYTDGKIVSDVRLSAGLVGTTVTAEQLFYNAPSRRRALKYPADEMNRIADVIVRYAIH 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITLQGY 236
            P VSFTF    S          +GN    I+ ++GE    N   ++  ++    +L GY
Sbjct: 183 NPNVSFTFRRCGSGSD--FRTIGDGNVYNVIASLLGEKASKNLVMLDHKDEKLFFSLSGY 240

Query: 237 TGIPTFNRGNANQF---------YVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
             +P+                  ++FIN R+V+   +   +   +     L     V+L 
Sbjct: 241 MSLPSAFCTARTIQARQDRQKIFFLFINNRSVECPALKQGLDVVFGAQNTL--STFVLLS 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           L+I   ++DVNVHP KS + F     I + I   I++ I+    S +      +++S   
Sbjct: 299 LQIATNRIDVNVHPTKSTVFFLEQDAIISSIQDYIERVIHDSSGSCNMATCSSLLTSSAV 358

Query: 348 DNAPKT 353
               + 
Sbjct: 359 TTCSQP 364


>gi|66807125|ref|XP_637285.1| MutL DNA mismatch repair protein [Dictyostelium discoideum AX4]
 gi|74853037|sp|Q54KD8|MLH1_DICDI RecName: Full=DNA mismatch repair protein Mlh1; AltName: Full=MutL
           protein homolog 1
 gi|60465685|gb|EAL63764.1| MutL DNA mismatch repair protein [Dictyostelium discoideum AX4]
          Length = 884

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 214/465 (46%), Gaps = 53/465 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+++++N+I+AGE+I+RPS A+KEL+EN LDA+S+ +   +  GG  F QI DNG 
Sbjct: 62  KIHRLTQEVVNKISAGEVIQRPSNALKELLENCLDAKSTTITVTVKDGGMKFLQIQDNGS 121

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK++  +D  +I +FGFRGEAL SI  VSHL ++++   +    
Sbjct: 122 GIRLEDMGIVCERFTTSKLTKFEDLRSIQSFGFRGEALSSISHVSHLKILTKTADSPCAY 181

Query: 120 QIAISGEKISSV---------RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITD 170
           +      K++           +P A   GT + V DLFF  P+R N LK+   E + I  
Sbjct: 182 RACYLNGKLTPPSPNEQSSDPKPCAGVNGTQITVEDLFFNTPSRKNVLKNTVDEHSRIVL 241

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFIN---------- 219
           ++++ AI  P VSF          +++      +   + I  + G D             
Sbjct: 242 LMKKYAINNPTVSFILKKQGDPTPEVHTSGGQNSLEKDVIGSLYGTDLSKELKIITIDPN 301

Query: 220 ---------------NAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFI 264
                               N    + T++G+     +N    N   +FINGR V  K +
Sbjct: 302 NPNPNNDDDDNISGSQIKNSNLNRLDFTMKGFFSSTNYNSKKINFI-LFINGRLVDSKNL 360

Query: 265 LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
            + +   Y++ +P G +P + + L + P+ +DVN+HP KS ++  +   I  FI Q + +
Sbjct: 361 KTGLEQVYSKYLPKGTHPFMFIRLLVPPKNIDVNIHPTKSEVKILHEEQIIEFIQQKVDQ 420

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA--------------TSLTNTQEKLF 370
            ++    ++ +  ++ ++  F QDN   +   +                 + T+ +E + 
Sbjct: 421 ELS-ISSNSKTFSTQILLPGFDQDNVSSSQKKQKNSQSSSTQTKSTNNNNNPTSRKEPIE 479

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
             ++++ ++    + D   +  +       +     G    +   
Sbjct: 480 YAKDKIRSDSKSQTLDAFLNPMDYNNNNDSSIDDNDGSGIGRYDD 524


>gi|71650793|ref|XP_814087.1| mismatch repair protein MLH1 [Trypanosoma cruzi strain CL Brener]
 gi|70879030|gb|EAN92236.1| mismatch repair protein MLH1, putative [Trypanosoma cruzi]
          Length = 864

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 109/394 (27%), Positives = 179/394 (45%), Gaps = 34/394 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++LS+ ++N+IAAGE+++RPS A+KEL+EN+LDA S+ ++ ++  GG    Q+TD+G 
Sbjct: 3   RIKRLSDNVVNRIAAGEVVQRPSAALKELLENALDAGSTFIQVLVRDGGLGLLQVTDDGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP----QN 115
           G+  +++P+  +R+ TSK+   +D S I +FGFRGEAL SI  VS +T+ +       + 
Sbjct: 63  GIHRDDLPLLCERYATSKLRSFEDLSRITSFGFRGEALSSISYVSRVTVTTMRRVDKDEA 122

Query: 116 NTGA----QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           ++G        + G       P A NPGT + V  +F+    R   L     E + I  +
Sbjct: 123 SSGTLAWRCQYLDGAMQGEPTPCAGNPGTSIRVEKMFYNSAVRRRALNRPSEEYSRIVAL 182

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYK-MNFQSTNGNFPERISQVIGEDFINNAVELNE---- 226
           I R A+A+P V F+    +    K   F   + +    I    G    ++  EL      
Sbjct: 183 ISRYALAFPHVGFSCRREEGTGGKAEIFFPKDSSSLANIRLFHGPAIASHLNELKCVEAG 242

Query: 227 ----------------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                             +   + GYT        N     +F+N R V+   I   I T
Sbjct: 243 AGSGSPETVLAKRGEAGEDCFLITGYTSGMALLNRNP-YLCIFVNNRLVESAVIKRAIDT 301

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y+  +  G  P  VL + I P +VDVN+HP K  +   +  II   + +S++ A+ +  
Sbjct: 302 VYSGILTGGNRPFTVLFITIPPDRVDVNIHPTKHEVCLLDEEIIVAQLSESVRLAVMESA 361

Query: 331 ISTSSVLSK--KMISSFHQDNAPKTHLPKYATSL 362
                         ++   D       P    S 
Sbjct: 362 ARRQLDTRHVLSKAAALAGDRGAHVSQPSPLPSS 395


>gi|302664970|ref|XP_003024108.1| DNA mismatch repair protein, putative [Trichophyton verrucosum HKI
           0517]
 gi|291188140|gb|EFE43490.1| DNA mismatch repair protein, putative [Trichophyton verrucosum HKI
           0517]
          Length = 878

 Score =  279 bits (714), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 176/376 (46%), Gaps = 23/376 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE ++  GG    QITDNG G+
Sbjct: 86  KALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEILVREGGLKLLQITDNGHGI 145

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
             +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   + 
Sbjct: 146 DHDDLSILCERFTTSKLQAFEDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAWRA 205

Query: 122 AISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPA-------RLNFLKSEQVETN 166
             S  K+           +P+A   GT + V                     +S   E  
Sbjct: 206 HYSDGKLVPAKPGQNASPKPIAGRKGTQITVSTALENPSIIFSLSIYMHMLTRSASEEYA 265

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVEL 224
            I D++ R A+     +F+          ++  S N +  +RI Q+ G    N   ++E+
Sbjct: 266 KILDIVGRYAVHCSGTAFSCKKHGEAGVSLST-SINSSILDRIRQLHGGAVANELVSLEV 324

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
           + K        +     ++        +FIN R V+   I   +   Y+  +P G +P V
Sbjct: 325 DGKRWGCRASAWVTNANYH-AKKTTLLIFINHRAVESTAIKRAVEQTYSTFLPKGGHPFV 383

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
            L LEI+P+++DVNVHP K  + F N   I   I  +I+  +    + +S     + +  
Sbjct: 384 YLDLEIEPQRLDVNVHPTKREVNFLNEDEIIESICSAIRTKLA--AVDSSRTFMTQTLLP 441

Query: 345 FHQDNAPKTHLPKYAT 360
             +   P T     ++
Sbjct: 442 GIRPPEPATLAGDASS 457


>gi|323447423|gb|EGB03344.1| hypothetical protein AURANDRAFT_55567 [Aureococcus anophagefferens]
          Length = 690

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 123/676 (18%), Positives = 242/676 (35%), Gaps = 99/676 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGF 61
           I K+      ++++G+++   + A+KEL+EN+LDA ++ +E  I   GG +  +  DNG 
Sbjct: 5   IAKIDTASARKLSSGQVVVDLAGAVKELLENALDAGATSIELRINDDGGGAEIECADNGH 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           G+   +  +   R  TSK+   ++   + +FGFRGEAL S+  ++  + +++R   +  G
Sbjct: 65  GIAPRDFALVAARSATSKLVNFEELRTVQSFGFRGEALASLRELAGEVLVVTRTSADAVG 124

Query: 119 AQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           A+++   + I           GT V VR LF   P R     +  +   +     ++  A
Sbjct: 125 ARLSFQRDGILKSSTPHARSVGTTVTVRGLFDCAPVRRADLARRWKWHVSRALRTVQAHA 184

Query: 177 IAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-----KS 228
           +         + +    + R          +  E  S + G  F  +  E++      + 
Sbjct: 185 LVAVGCRLRLTLVSGGGATRRTAIAVQAPRSLRESASALFGHAFARSLEEVSFDLRGGED 244

Query: 229 NEITLQGYTGI------PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR-Y 281
             + + G          P    G  ++ ++F+NGR +    +   I   +       R  
Sbjct: 245 CSLAVIGLMSRAGGFDAPGPRGGGGDRQFLFVNGRPIDAPRVSRCIGDVWRSVEGDRRGR 304

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK------------K 329
           P  VL + + P  VDVNV P K  +   + T +   +  ++                   
Sbjct: 305 PAFVLDIRVPPSAVDVNVSPDKRDVVLDDETGLVAALRIALHDLWEPSRGSFAGGRSLAP 364

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
            ++ S+    +   S     A  + +   AT+      +  L            SD    
Sbjct: 365 HVAPSTTPDTEAPCSLVLPIAVPSCVTSTATATNAPAREAMLVVPPTLRPTQRNSDTIAV 424

Query: 390 SED---NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH-------------- 432
           ++    +          +   +A A++H + +             H              
Sbjct: 425 AQVIALSPWQAARAHIDWNCAVAPARLHASSVFGTLAVQSRCGHGHRTVQIDRRPGGNVP 484

Query: 433 -------------------------------------AAHERLIFEKMRQDFNSTKITSQ 455
                                                AA E+  +E +   +  T++ +Q
Sbjct: 485 TAALAKTDFSAMEALGQFNLGFLVCRLGDHLFLVDQHAADEKFRYEAL---WRDTRVDTQ 541

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIP----AILSKK 507
            LL P  +DL   E   ++E    + R+G +            +A+  +P    A     
Sbjct: 542 PLLAPLSLDLGATEELALLERRCTVERVGFRLAVNDLAPPGRRVAVISVPSARGATFGVS 601

Query: 508 NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           +I +L+  ++D+     TT     ++  + A+ AC  ++  G  +   +M +LL  +   
Sbjct: 602 DIRELIT-LLDDDAAHDTTLPKLPKLHTLFASKACRAAVMIGTPLIKTKMTQLLDHLATL 660

Query: 568 PNSSQCNHGRPTFIKL 583
                C HGRPT   L
Sbjct: 661 LQPWNCPHGRPTTRHL 676


>gi|303283872|ref|XP_003061227.1| DNA mismatch repair and recombination [Micromonas pusilla CCMP1545]
 gi|226457578|gb|EEH54877.1| DNA mismatch repair and recombination [Micromonas pusilla CCMP1545]
          Length = 743

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 15/344 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR+L+E ++N++AAGE+I RPS A+KEL+EN+LDA ++ +   +  GG    Q+TD+G 
Sbjct: 9   PIRRLAEDVVNRVAAGEVIHRPSSALKELLENALDAGATAITVTVKDGGCKLLQVTDDGV 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++ +  +RH TSK++  +D + + TFGFRGEAL S+  V++LT+ +         
Sbjct: 69  GIRENDLAILCERHTTSKLATFEDLNEVATFGFRGEALASMSFVANLTVTTMTKDAPHAL 128

Query: 120 QIAISGE--KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           + +      +  +  P A   GT + V +LF+ +P R   L+S   E N I DV++R A 
Sbjct: 129 KASYRDGVLENGAAMPCAGVKGTTIAVENLFYNVPTRRKALRSPTEEYNRIVDVVQRYAS 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE------- 230
           +    SF    +   R  ++         +R+  V G         L    +        
Sbjct: 189 SRTATSFVIRKLGEARPALH-CPVATERVDRLRAVYGAAVAKELTPLRLNVSMPGAGAGG 247

Query: 231 --ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
               L       +++   +    +FIN R V+   +   I   YA  +P    P V   L
Sbjct: 248 LRFALDALISSSSYHSKKSTFV-LFINDRLVECAGLKRAIEAVYAAVLPKAEKPFVYAAL 306

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
            + PR VDVNVHP K  + F +   + + + ++++  +     S
Sbjct: 307 TLPPRAVDVNVHPTKREVHFLHQDELIDEVQRAVEGVLRGANAS 350


>gi|170580896|ref|XP_001895452.1| DNA mismatch repair protein MutL containing protein [Brugia malayi]
 gi|158597590|gb|EDP35698.1| DNA mismatch repair protein MutL containing protein [Brugia malayi]
          Length = 684

 Score =  277 bits (708), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/336 (33%), Positives = 170/336 (50%), Gaps = 18/336 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I R +  IKELIEN+LDA ++ +      GG    ++ DNG G
Sbjct: 2   IRRLPENVVNRIAAGEVIVRAANVIKELIENALDAGATEIIITAKNGGLDLLKVQDNGKG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++ +  +R  TSK+   +D   + TFGFRGEAL SI  V+ +T++S+   +     
Sbjct: 62  IAKNDLAIVCERFTTSKLEKYEDLECMSTFGFRGEALASISHVAKVTIISKTSDSPCAYV 121

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+   ++P A   GT V   DLF+  P+R   LK    E N I D++ R AI  
Sbjct: 122 GRYTDSKLQGDIKPSAGLDGTSVTAEDLFYNCPSRRRSLKYPADEMNRIADIVVRYAIHN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQGYT 237
           P VSFT     S        +   N  E IS ++G  F  + + LN   +    TL+G  
Sbjct: 182 PSVSFTLRRCGSGSD--FRTAGTNNLCETISSLLGGKFSKDLILLNHSDSALYFTLKGCF 239

Query: 238 GIPTFNRGNANQF---------YVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
             PT +                Y+FINGR+V+ + +   +   +     +   P V++ L
Sbjct: 240 VRPTASCTAETLQNRQNCQKVFYLFINGRSVECQALKQALDVVFGAQNTM--SPFVMISL 297

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
           +I+PR+VDVNVHP KS + F     I + I   ++ 
Sbjct: 298 QIEPRRVDVNVHPTKSVVYFLEQDSIISSIQDYVEN 333


>gi|213404194|ref|XP_002172869.1| MutL family protein Mlh1 [Schizosaccharomyces japonicus yFS275]
 gi|212000916|gb|EEB06576.1| MutL family protein Mlh1 [Schizosaccharomyces japonicus yFS275]
          Length = 700

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 139/571 (24%), Positives = 241/571 (42%), Gaps = 46/571 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L E ++N+IAAGEIIERP  A+KELIENSLD+ES+ ++ ++  GG    QI+DNG 
Sbjct: 9   RIRPLGEAVVNKIAAGEIIERPENAVKELIENSLDSESTIIDVLLKEGGLKLLQISDNGT 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++P+  QR  TSKI+  +D S++ TFGFRGEAL SI  +S LT+ ++      G 
Sbjct: 69  GIYNDDLPLLCQRFSTSKITKFEDLSSVKTFGFRGEALASISHISRLTVTTKRKDAVHGW 128

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +      K++          +P A   GT+V V DLF+ +P+R   LK+   E   I  +
Sbjct: 129 RAFYIDGKLAPATGHGSSAPQPCAGKQGTVVSVEDLFYNVPSRKVALKNGAEEFRRILLL 188

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--- 228
           I++ AI    VSF+      +   ++  S      +RI QV G +   N +         
Sbjct: 189 IQKYAIHNESVSFSCKKFGDSAATLSLSSRF-RRIDRIRQVYGSNLAKNLLPFEVYGGSL 247

Query: 229 -NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
               + QG      +         +FIN R V+   +   +   Y+E +P G  P + L 
Sbjct: 248 LEGFSAQGLVSNANYASKKTVFL-LFINNRLVESTDLRKNLEEVYSEFLPKGASPFLYLS 306

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS---------TSSVLS 338
           L I   QVDVNVHP+K  + F +   I + +   + K +  +             S+   
Sbjct: 307 LNIPESQVDVNVHPSKRVVHFLHDQEIADLLRSHLSKVLENEDARRSYHVQTVLPSTTTM 366

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
            K   S  Q     T    +       ++ +    NR +      +     + +    E 
Sbjct: 367 LKTPESNRQGRPSHTVYEHHMVRTDPREQSIKTLMNRHTPTSSQKTPACGPASEATDYEA 426

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF--NSTKITSQT 456
           S        ++ + + Q+      T+           E L    +         K     
Sbjct: 427 SPTPVASKSLSRSNLLQSEDKVYRTEVNYKSILELREEVLQSMHVLTTNILTEHKYVGLV 486

Query: 457 LLTPEIIDLLEGECALIMEHD----EDLHRLGI-KAERFG----PNAIAIREIPAI-LSK 506
                +  +       ++++     E  +++G+ +   FG      +I++R +  + L +
Sbjct: 487 CPERGLCVIQYNIGLFLVDYLSLSFELFYQIGLSEFCNFGCIKLEPSISVRTLLELGLPE 546

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           ++             ++     L ++ E +L
Sbjct: 547 QDEVD---------GETKNKSELLEKTERLL 568


>gi|190346896|gb|EDK39083.2| hypothetical protein PGUG_03182 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 693

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 116/617 (18%), Positives = 236/617 (38%), Gaps = 57/617 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +L + +I Q+ A   +   + A++EL+ NS+DA+++ +   I     S   +TDNGF
Sbjct: 88  KLHQLDKDVIQQLVAPLSVSGYASAVRELLHNSIDAQATFISVKIHLDSMS-VMVTDNGF 146

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+   ++ +   ++ TSK   D S++ T GFRGEAL +I  VS  T++S+        + 
Sbjct: 147 GINEADLGLVGTQNYTSKAEKDLSSVKTMGFRGEALFAISQVSSTTIVSKVDGFGANTRH 206

Query: 122 AISGEK-------------ISSVRPVAMNPGTIVEVRDLFFTIPARLNF--LKSEQVETN 166
                               +          T+V VR LF     R      ++ Q   +
Sbjct: 207 LGDPNVDLFEPDAQVCNDIFAIDPTCLGTSWTVVIVRGLFANFKVRRAQLLSQNIQSILS 266

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
            + + +   ++ +P+V    + + + +  +   S        I  V G   +     +N 
Sbjct: 267 ELKNEVAECSLLFPRVKIEVNVVPAEQSIVVSPSMENPLVSTIRSVYGFRALPAYELVNV 326

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +  +  + G  G   ++  +    ++FIN R                E   L      VL
Sbjct: 327 RYQQYRISGIIGK--WSWVSP-LKFIFINERKYIASS------QDLKEFNKLVHNSAYVL 377

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
           ++     ++     PAK   R  +  +++  I++ ++K              K  +S   
Sbjct: 378 MVTCPTDEIT--QDPAKVLYRVHHWKVVKRMILELLEKFGVLDSPMKERSPRKSHLSPRK 435

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
             ++P+    K  + + +  + LF    +L  N  + S     + + D     +    + 
Sbjct: 436 SLSSPRKSPSKPRSPVKSPTKGLFSS-RQLHPNHSISSFKTISAINVDSFRVLKQLDRKY 494

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE-KMRQDFNSTKITSQTL----LTPE 461
            +  A +       ++   L IVDQHA  ER+  E  ++     TK+             
Sbjct: 495 ILFVAIV-------ESHSRLFIVDQHACDERIRVESYLKDYIQRTKVNQHQNKAQLSQQL 547

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL---LRDIID 518
            ++L   +   +  H   L   G   E F  N   + ++P +L  K++  +   +   ++
Sbjct: 548 QLELSPTQILHLQSHHAQLQSFGFDIE-FRENHAFLLQVPEVLYDKSVSAVSLGIAQYLE 606

Query: 519 EIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
            +  +  +  +                I + +   AC  +I  G  +   EMN +L+ + 
Sbjct: 607 HLAANQKSSRIGEPHHWTHAVKDVPQIILDSINMRACRSAIMFGIPLTLAEMNYMLQCLF 666

Query: 566 KNPNSSQCNHGRPTFIK 582
           +  +   C HGRP+ ++
Sbjct: 667 RCQHPFHCAHGRPSVVE 683


>gi|123474386|ref|XP_001320376.1| DNA mismatch repair protein [Trichomonas vaginalis G3]
 gi|84784018|gb|ABC61974.1| MLH1-like protein 1 [Trichomonas vaginalis]
 gi|121903180|gb|EAY08153.1| DNA mismatch repair protein, putative [Trichomonas vaginalis G3]
          Length = 898

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/329 (33%), Positives = 170/329 (51%), Gaps = 6/329 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +L E +I +IAAGE+I  PS   KEL+ENS+DA S R+ T +  GG S  +I+DNG 
Sbjct: 5   RILQLDESVIKRIAAGEVINFPSNVAKELLENSIDAGSKRISTELQNGGYSLIKISDNGC 64

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ + ++P+A QRH TSKI    D  N+ TFGFRGEAL S+  VSHL+++S+  +++ G 
Sbjct: 65  GINAADMPLACQRHATSKIQSFNDLRNVTTFGFRGEALFSMSCVSHLSILSKTEESSFGY 124

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                 G  I  +  V +  GT V + DLF+  P +L        +   I  +++R AIA
Sbjct: 125 SGNFQDGNLIGELSTVPITIGTTVTISDLFYNKPTKLRTSPDSATQNRKILQIVQRYAIA 184

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           YP++SF+       +   +  S++ +    +  +         V   + +   T++ Y G
Sbjct: 185 YPEISFSVICDGKEKMMTHGSSSHYDVISLLYGIDAR--SATFVLTGDIAKNTTVEMYLG 242

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P+  +       VF+NGR VQ   I   I   Y   +  G  P   +LL + P +VDVN
Sbjct: 243 SPSAKKQLKES-AVFVNGRLVQCDHIKRAINAVYGSFLMRGEKPFAFVLLRMPPDKVDVN 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           VHP K  + F N   + + I   I   + 
Sbjct: 302 VHPTKKDVIFTNEQSLIDNICDIILAELK 330


>gi|238878189|gb|EEQ41827.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 611

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/625 (20%), Positives = 234/625 (37%), Gaps = 63/625 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E +I QI +  I       ++EL++NSLDA ++ +   I     S   I DNG G
Sbjct: 2   ILRLDESVITQIRSHTIFHSLDSVVRELLQNSLDAGANEITIKIDLSSLS-VYIHDNGTG 60

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-------N 115
           +T +++     +H TSK        H+  ++GEAL ++ A+S+LT++S+ P        N
Sbjct: 61  ITPDDLEKVTLQHYTSK-------WHSHNYKGEALFALKAISNLTIISKAPDYTIPFKLN 113

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS--EQVETNLITDVIR 173
           N+ A++                 GT+V   ++F  IP R   +++         I   + 
Sbjct: 114 NSVAELYNEYSGGYFQIGDINPQGTVVIAANMFRNIPVRREQIRTTPHAKLVEAIKVAVL 173

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
                 P+V+     +     +++           + Q+ G       V    K+ ++  
Sbjct: 174 ESLTPNPRVNLKIFLVNHTTLQLDQIVAICGHSPLLFQLFGVKTKFEPVRAKFKNIKVV- 232

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTV-----QDKFILSTIRTAYAETI---------PLG 279
            G  G        A   YVF+N R V     + K +     ++    I         P  
Sbjct: 233 -GVIGREPIT---AKHQYVFVNDRRVTLSLGESKRLNDLFSSSGFNDIDFRTKTTDKPFY 288

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
           ++P  +  +    R+V  + +     +      II   I + + +    K + ++  + +
Sbjct: 289 KHPTFMFRVYPGKREVVQDSYTWNIVL-----RIIYKIIAKFLDRRQPPKPLLSTPPIHR 343

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE---NRLSTNDLLPSDDPTYSEDNDPV 396
                          L +              +E    R+ T   LP    +        
Sbjct: 344 TSDKYILTTKTKLGFLKENEIDGLVDNRPYHGKEAPLPRIPTIAHLPHQCTSTHTTPHLT 403

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                   +      Q+ + +I+    D LV++DQHA+ ER+  E+  Q+F S       
Sbjct: 404 SSQTDLAPEKFRVINQVDRKFILLAADDQLVVLDQHASDERIRVEQYLQEFVSQPNPGLR 463

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL--SKKNIPQLLR 514
           L +P   D+   E  L  ++  + +  GI         + I  +P IL    ++  + L+
Sbjct: 464 LHSPIAFDVHASELMLFDQYAANFNSFGICYTT-DTAQVVITHLPLILLTKVEDDAEFLK 522

Query: 515 D-IIDEIID---------------SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           D ++    D                 T+Y L   I  ++ + AC  +I  G  +   EM 
Sbjct: 523 DSLLQHCYDLHDHVKRISPNFDNWFETSYHLPRIITELINSKACRSAIMFGDILTKDEMQ 582

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKL 583
            L+ ++ +     QC HGRP+ + +
Sbjct: 583 DLVNKLSRCKLPFQCAHGRPSIVPI 607


>gi|312082271|ref|XP_003143375.1| hypothetical protein LOAG_07794 [Loa loa]
 gi|307761459|gb|EFO20693.1| hypothetical protein LOAG_07794 [Loa loa]
          Length = 647

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 175/336 (52%), Gaps = 18/336 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I R + AIKELIEN+LDA ++ +      GG    ++ DNG G
Sbjct: 2   IRRLPEDVVNRIAAGEVIVRAANAIKELIENALDAGATEIVITAKNGGLDLLKVQDNGKG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++P+  +R  TSK+   +D   + TFGFRGEAL SI  V+ +T++S+ P +     
Sbjct: 62  IAKDDLPIVCERFTTSKLERYEDLECMSTFGFRGEALASITHVAKVTIISKIPDSPCAYV 121

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  K+  +++P A   GT V   DLF+  P+R   LK    E N I DV+ R AI  
Sbjct: 122 GRYTDSKLQGNIKPSAGLDGTTVTAEDLFYNCPSRRRALKYPADEMNRIADVVVRYAIHN 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--ELNEKSNEITLQGYT 237
           P VSFT     S        +   N  E IS ++G  F  + +     + +   TL+G  
Sbjct: 182 PSVSFTLRRCGSGSD--FRTAGTNNLCETISSLLGGKFSKDLILLNHGDSALYFTLKGCL 239

Query: 238 GIPTFNRGNANQF---------YVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
             PT +    +           Y+FINGR+V+   +   +   +A    +   P V++ L
Sbjct: 240 VRPTASCTAESLQDRQNRQKVFYLFINGRSVECLALKQALDVVFAAQNTM--SPFVMISL 297

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
           +I+P++VDVNVHP KS + F     I + I   ++ 
Sbjct: 298 QIEPKRVDVNVHPTKSIVYFLEQDSIISSIQDYVEN 333


>gi|70997465|ref|XP_753480.1| DNA mismatch repair protein Mlh1 [Aspergillus fumigatus Af293]
 gi|66851116|gb|EAL91442.1| DNA mismatch repair protein Mlh1, putative [Aspergillus fumigatus
           Af293]
 gi|159126791|gb|EDP51907.1| DNA mismatch repair protein Mlh1, putative [Aspergillus fumigatus
           A1163]
          Length = 709

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/319 (31%), Positives = 161/319 (50%), Gaps = 14/319 (4%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DD 83
           A+KELIEN++DA S+ +E ++  GG    QITDNG G+  +++P+  +R  TSK+   +D
Sbjct: 3   ALKELIENAVDAGSTSIEILVKDGGLKLLQITDNGHGIDRDDLPILCERFTTSKLKQFED 62

Query: 84  FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP----- 138
            S+I T+GFRGEAL SI  ++HLT+ ++   ++   +   S  K+   +P          
Sbjct: 63  LSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAWRAHYSDGKLVPPKPGQSAAPKATA 122

Query: 139 ---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
              GT + V DLF+ +P R    +S   E   I DV+ R A+    ++F+      +   
Sbjct: 123 GRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDVVGRYAVHCSGIAFSCRKHGESGAG 182

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVF 253
           ++   T  +  ERI Q+ G    N  VE   + ++      G      ++        +F
Sbjct: 183 IST-PTAASTVERIRQIHGSAVANELVEFQVEDSKLGFRSSGLVTNANYH-VKRTTILLF 240

Query: 254 INGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTI 313
           IN R+V+   I   +   Y+  +P G +P V + LEI+P++VDVNVHP K  + F N   
Sbjct: 241 INHRSVESTAIKRAVEQTYSSFLPKGGHPFVYIDLEIEPQRVDVNVHPTKREVNFLNEDE 300

Query: 314 IRNFIIQSIQKAINKKGIS 332
           I   I  +I+  + +   S
Sbjct: 301 IIECICDAIKSKLAQVDSS 319


>gi|291563254|emb|CBL42070.1| DNA mismatch repair enzyme (predicted ATPase) [butyrate-producing
           bacterium SS3/4]
          Length = 248

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/218 (39%), Positives = 129/218 (59%), Gaps = 5/218 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  INQIAAGE++ERP+  +KEL+EN++DA S+ +   I  GG  F +ITDNG
Sbjct: 1   MPIQVLDQSTINQIAAGEVVERPASVVKELMENAIDAGSTAITVEIRQGGIGFIRITDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+P+A  RH TSKI   +D   + + GFRGEAL SI AVS + L+++   + TG
Sbjct: 61  CGIKKEELPLAFLRHSTSKIRTAEDLLTVSSLGFRGEALSSIAAVSQVELITKTSGSLTG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++  I G +   +  +    GT    R+LFF  PAR  FLK+E  E   +TD++ ++A++
Sbjct: 121 SRYRIEGGEEKGLEEIGAPDGTTFISRNLFFNTPARRKFLKTETTEGAHVTDLVEKIALS 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
           +P++S        +R      S N N  + I  V G +
Sbjct: 181 HPEISIRLIVNNQSRLH---TSGNHNLKDIIYTVYGRE 215


>gi|146418974|ref|XP_001485452.1| hypothetical protein PGUG_03182 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 693

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 116/617 (18%), Positives = 235/617 (38%), Gaps = 57/617 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+ +L + +I Q+ A   +   + A++EL+ NS+DA+++ +   I     S   +TDNGF
Sbjct: 88  KLHQLDKDVIQQLVAPLSVSGYASAVRELLHNSIDAQATFISVKIHLDSMS-VMVTDNGF 146

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+   ++ +   ++ TSK   D S++ T GFRGEAL +I  VS  T++S+        + 
Sbjct: 147 GINEADLGLVGTQNYTSKAEKDLSSVKTMGFRGEALFAISQVSSTTIVSKVDGFGANTRH 206

Query: 122 AISGEK-------------ISSVRPVAMNPGTIVEVRDLFFTIPARLNF--LKSEQVETN 166
                               +          T+V VR LF     R      ++ Q   +
Sbjct: 207 LGDPNVDLFEPDAQVCNDIFAIDPTCLGTSWTVVIVRGLFANFKVRRAQLLSQNIQSILS 266

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
            + + +    + +P+V    + + + +  +   S        I  V G   +     +N 
Sbjct: 267 ELKNEVAECLLLFPRVKIEVNVVPAEQSIVVSPSMENPLVSTIRSVYGFRALPAYELVNV 326

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +  +  + G  G   ++  +    ++FIN R                E   L      VL
Sbjct: 327 RYQQYRISGIIGK--WSWVSP-LKFIFINERKYIASS------QDLKEFNKLVHNLAYVL 377

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
           ++     ++     PAK   R  +  +++  I++ ++K              K  +S   
Sbjct: 378 MVTCPTDEIT--QDPAKVLYRVHHWKVVKRMILELLEKFGVLDSPMKERSPRKSHLSPRK 435

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
             ++P+    K  + + +  + LF    +L  N  + S     + + D     +    + 
Sbjct: 436 SLSSPRKSPSKPRSPVKSPTKGLFSS-RQLHPNHSISSFKTISAINVDSFRVLKQLDRKY 494

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE-KMRQDFNSTKITSQTL----LTPE 461
            +  A +       ++   L IVDQHA  ER+  E  ++     TK+             
Sbjct: 495 ILFVAIV-------ESHLRLFIVDQHACDERIRVESYLKDYIQRTKVNQHQNKAQLSQQL 547

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL---LRDIID 518
            ++L   +   +  H   L   G   E F  N   + ++P +L  K++  +   +   ++
Sbjct: 548 QLELSPTQILHLQLHHAQLQSFGFDIE-FRENHAFLLQVPEVLYDKSVSAVSLGIAQYLE 606

Query: 519 EIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
            +  +  +  +                I + +   AC  +I  G  +   EMN +L+ + 
Sbjct: 607 HLAANQKSSRIGEPHHWTHAVKDVPQIILDSINMRACRSAIMFGIPLTLAEMNYMLQCLF 666

Query: 566 KNPNSSQCNHGRPTFIK 582
           +  +   C HGRP+ ++
Sbjct: 667 RCQHPFHCAHGRPSVVE 683


>gi|145353672|ref|XP_001421130.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581366|gb|ABO99423.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 722

 Score =  273 bits (698), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 176/388 (45%), Gaps = 14/388 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L   ++N++AAGE+I RPS A+KEL+ENSLDA +  +      GG    ++ D+G G
Sbjct: 17  IGRLPSDVVNRVAAGEVIHRPSNALKELVENSLDAGAKSIAVTTREGGNKLLRVQDDGHG 76

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++P+  +RH TSKI   +D +   +FGFRGEAL S+  V+H++  +         +
Sbjct: 77  VRIEDLPLLCERHATSKIEKFEDLARCESFGFRGEALASMSYVAHVSATTMAAGATHATR 136

Query: 121 IAISGEKISSV--RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
              +  K+ +   +P+A   GT + V +LF+ +  R   LKS   E + + +V++R A  
Sbjct: 137 ATYTDGKMDAEGAKPIAGVLGTTISVENLFYNVVTRRKALKSASEEYSKVLEVLQRYAAL 196

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN--------NAVELNEKSNE 230
              V+FT      +R  ++      +  ER+  + G             + +   +   +
Sbjct: 197 RTDVAFTCRKHGESRATLHT-PVAQSRVERLQAIYGPTVARDLKKLDFDSELSKKKFDFK 255

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           + + G      ++        +FIN R V+   +     + YA  +P    P V + L +
Sbjct: 256 LQVDGLVSGGNYHSKKTTFI-LFINSRLVECAPLKRACESVYAAILPKAEKPFVFMHLRL 314

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
               VDVNVHP K  + F +   I   I   ++K +     S +  +   +  +      
Sbjct: 315 PFEDVDVNVHPTKQEVHFLHQEAIVELIQSKLEKILLATNSSRTFTVQTLLPGAEKLAKK 374

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLST 378
              +  + +    N+++      ++  T
Sbjct: 375 DDENDAERSGDKENSEKADEPPASQAKT 402


>gi|281210065|gb|EFA84233.1| MutL DNA mismatch repair protein [Polysphondylium pallidum PN500]
          Length = 825

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/347 (31%), Positives = 175/347 (50%), Gaps = 22/347 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS  +IN+I AGE++ RPS A+KELIEN LDA S+ +   +  GG    QI DNG 
Sbjct: 15  KIHKLSVDVINRINAGEVVLRPSNALKELIENCLDAHSTIITITLKEGGLKLLQIQDNGC 74

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSK+S  DD   I TFGFRGEAL SI   SHL +++R  ++    
Sbjct: 75  GIKLEDMSIVCERFTTSKLSKFDDLRKITTFGFRGEALSSISHCSHLKILTRTHESPYAY 134

Query: 120 QIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           + +    K+           +P A   GT + V DLF+  P+R   +K+ Q E N I D+
Sbjct: 135 RASYHDGKLHAPTPGQSAEPKPCAGLVGTQITVEDLFYNNPSRKLVIKNPQDEHNRIVDL 194

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDF--INNAVELNEKSN 229
           I++ +I    V+F           ++    +    E IS + G +       + L+    
Sbjct: 195 IKKYSINNSTVAFIVKKFGDPTPDVHT-PGSLTEKEVISILYGNEIGRELKELSLSNNQL 253

Query: 230 EITLQGYTGIPTFNRGNANQFYVFIN--------GRTVQDKFILSTIRTAYAETIPLGRY 281
           +  ++G+     ++   A    +FIN         R V+ K + S ++  Y + +P G +
Sbjct: 254 DFEMKGWFTSTNYSGKKAVFI-LFINICVLFESLDRLVESKNLKSGLQRLYEKYLPKGTH 312

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           P + + L ++P+ VDVN  P KS ++F N   I   I + +   +N+
Sbjct: 313 PFMYIRLHLNPKNVDVNCSPTKSEVQFLNEEAIIEMIQKLVDVQLNQ 359


>gi|145510949|ref|XP_001441402.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124408652|emb|CAK74005.1| unnamed protein product [Paramecium tetraurelia]
          Length = 623

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 205/487 (42%), Gaps = 22/487 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL +++IN+IAAGE+++RP   +KE++ENS+DA +  +   +   G    +I DNG G
Sbjct: 2   IKKLPQEVINKIAAGEVVQRPYSVVKEMVENSIDAHAQNITIYLNNAGLDLIRIIDNGDG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+  +  +R+ TSKI   +D   + +FGFRGEAL SI  VS +T++S+      G +
Sbjct: 62  IMKEDYELLCERYATSKIRAAEDLFQLFSFGFRGEALASISFVSEMTVISKRKDQVLGYK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
              + +K+ S+ P+  + GT +++  LF+ +  R   L ++  E   I  +I+ +++ + 
Sbjct: 122 GTYNSQKLLSMSPIGCSDGTEIQIAQLFYNLEKRRQAL-NKSEEKKSILQLIQSLSLHHS 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +V F         +    +    +   +I+Q   ++   ++     +S+ I  +      
Sbjct: 181 QVQFKLFYENKCEFSSFSRLDTISSIMKINQTCIQEKSFSSDIYKYESHLIFTK------ 234

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL-----GRYPVVVLLLEIDPRQV 295
             +     +  +FIN R V    +   I  AY +         G Y V  L +++ P+ +
Sbjct: 235 LSSVKYKRELCLFINDRFVDCDTLKKKITQAYQDCYLCLRVEDGGYYVY-LSIKLQPKDI 293

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           D NVHP K  +RF N   I   I + +++ ++ +       L + ++         K + 
Sbjct: 294 DPNVHPNKKIVRFLNEDEISTEISEKLKQELSPQQTVK---LVQTVLFQPKSQEEQKKNS 350

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
             +  SL N Q     Q+ ++  +    +    +++ +                  +I +
Sbjct: 351 FSFKQSLQNQQ---LYQKEKVRIDPKTQTLLQQFAKKSQAQLSQSLHSMIPNTQSQKIEE 407

Query: 416 NYIISQTTD-GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
                      +   +     E    E ++    +     Q       +   +     + 
Sbjct: 408 ESNSIIDESINIKHENPKLDDELSKNESVKIIQTNQGSKIQEEKQQIQVSRTQRFKLSVE 467

Query: 475 EHDEDLH 481
              E  +
Sbjct: 468 SQLELFN 474


>gi|145551871|ref|XP_001461612.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429447|emb|CAK94239.1| unnamed protein product [Paramecium tetraurelia]
          Length = 685

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 129/670 (19%), Positives = 254/670 (37%), Gaps = 95/670 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L+++ I  I+    ++  +  +KELIENS+DA+++++       GK  F++ DNG G
Sbjct: 2   IKQLNQESILHISTSSTLQSLASFVKELIENSIDAQATQIIVNFFNNGKEGFEVIDNGIG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +++        R  TSKI   +D   + T GFRGEAL SI  +S++T++S+      G +
Sbjct: 62  ISTINQKQLATRGGTSKIENFEDLEFVVTHGFRGEALNSIATLSNVTIISKHKDEELGWK 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAY 179
             I          +A   GT + V ++F+T+P R   F K+ ++E N   +++   AI  
Sbjct: 122 WEI----PQEPTKIARQTGTSIRVENIFYTLPVRAQEFKKNYKIEYNKAINILTEYAIIN 177

Query: 180 PKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
             + F           +  ++    N N  +RI+ V+G+   N+ +   + S + TL G+
Sbjct: 178 TNIEFKIYNEEEKNKKKLILDSGLANQNMKQRITNVLGDSIANDLIPFEKISQDFTLIGF 237

Query: 237 TGIPTFN-----RGNANQFYVFINGRTVQDKFILSTI-RTAYAETIPLGRYPVVVLLLEI 290
                 +     +     +Y +IN + +     +  I R  Y +  P G +   +L + +
Sbjct: 238 LSKSIESGSYKGQNRKTFWYCYINKKPINPPKQVLQIMRDIYRQHNPNGNF-FFILEINL 296

Query: 291 DP-RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
                 D NV   K  +  +N  +I   I Q + + + K       +     +  F    
Sbjct: 297 RQINDADFNVSVDKRDVYLKNEKLILENIEQIVTETLEKNKEKLKYIGRDGNLDQFIMAT 356

Query: 350 APKTHLPKYATSLTNTQEKLFLQENR-----------LSTNDLLPSDDPTYSEDNDPVEE 398
           A ++  P  +  +  T+++      +           LS    L       +E N    +
Sbjct: 357 AKQSEKPAPSQIIAQTEKRKDPPPQQTKEIQKRNSTFLSQLKNLNPQKNIPNEFNQNESQ 416

Query: 399 SEATHYQLGIACAQI------------------HQNYIISQTTDGLVIVDQHAAHERLIF 440
              +   L     Q                   +   I  +  + +   ++    E   F
Sbjct: 417 FTQSQQDLQQQQQQQQQQQQQQQQQQQQPTSQPNNEKIQLKINEVIQQKEEKQLFEADEF 476

Query: 441 EK--------------MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL--- 483
           E+              ++      K         +I  L +  C     ++  +++L   
Sbjct: 477 EQLSKQNHFLKEHFNNLQIIGQFNKGFIICEHEEKIYVLDQHACDEKYNYERLINQLKFN 536

Query: 484 -------------GIKAE-----------------RFGPNAIAIREIPAILSKKNIPQLL 513
                        G   E                     N + ++  P+  + +     L
Sbjct: 537 RAQLIVPITLKLSGFLLELLIDNQQQINDKYKYQVEITENCVKVKTCPSYSNIQLGADTL 596

Query: 514 RDIIDEIIDSSTTYTLQ-DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             I+D++        ++  +I+  LA+ AC  SI  G  +Q+ +M  +++ +    +   
Sbjct: 597 LQILDQLSQGKKLDQIEIPQIKQKLASQACRTSIMVGSDLQAKQMENVVKNLTTLISPWN 656

Query: 573 CNHGRPTFIK 582
           C HGRPT I+
Sbjct: 657 CPHGRPTLIQ 666


>gi|257454881|ref|ZP_05620132.1| DNA mismatch repair protein MutL [Enhydrobacter aerosaccus SK60]
 gi|257447814|gb|EEV22806.1| DNA mismatch repair protein MutL [Enhydrobacter aerosaccus SK60]
          Length = 530

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 180/353 (50%), Gaps = 27/353 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KLS  +INQIAAGE++ RP+  +KELIEN++DA ++ +   I  GG    QI+DNG 
Sbjct: 5   RIHKLSPLLINQIAAGEVVTRPASVVKELIENAIDANATHIRIDIEQGGLGLIQISDNGM 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +AV RH TSK++   +   IH+ GFRGEAL SI A+SHLTL S    +  G 
Sbjct: 65  GIHPDDMTLAVTRHATSKLANVSELVGIHSLGFRGEALASIAAISHLTLTSSHNDSGIGQ 124

Query: 120 QIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+++SG ++S   +RP+  + GT V VRDL+F +P R + LKS   E   I  V++R+AI
Sbjct: 125 QLSVSGSEVSQATIRPIVKHRGTCVSVRDLYFNVPGRRSHLKSIATEFAHIEQVVQRLAI 184

Query: 178 AYPKVSFTFSTIKSNRYKM--NFQSTNGNFP-------ERISQVIGEDFINNAVELNEKS 228
           ++  V          R+ +  + Q+ + N            S V  E  +N  +    + 
Sbjct: 185 SFADVQIELYHQDKLRFSLTQSAQAPHQNLEGAALPFLPAFSLVRLEQALNLPLANIAQP 244

Query: 229 NEITLQGY-----------TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-- 275
             ++LQG            TG       N     ++IN R V D  I   I+    +   
Sbjct: 245 FYLSLQGLQAQTEELSAQVTGWFFIAHKNNLPKLIYINHRLVSDMAISQAIQKVGRKLGI 304

Query: 276 -IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            I         L  E+    ++VN+HP+K  ++ +  T I  ++ Q + + + 
Sbjct: 305 GIDNSLQMGYALSFELPAEWINVNIHPSKQQVKIQPLTNILAWLSQHMLEQLQ 357


>gi|161833848|ref|YP_001598044.1| putative DNA mismatch repair protein MutL [Candidatus Sulcia
           muelleri GWSS]
 gi|152206338|gb|ABS30648.1| putative DNA mismatch repair protein MutL [Candidatus Sulcia
           muelleri GWSS]
          Length = 367

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 191/337 (56%), Gaps = 9/337 (2%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I+ LS+ + N+IA+GE+I  PS  +KE++ENS+DA +  ++ ++  GGK+   I D
Sbjct: 1   MTNVIKFLSKNVSNKIASGEVIHNPSSILKEILENSIDAYAKNIKIILKNGGKNRIHIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G GM+  +   + +R+ TSKI+  +D  NI T GFRGEAL  I +V+ + + +R  +++
Sbjct: 61  DGIGMSKNDAIKSFERYSTSKINKIEDLLNISTKGFRGEALSYISSVTQIEIETRYIESD 120

Query: 117 TGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
            G ++ I   K+  +  P+AM+ G  + ++++F+ IPA+  FLKS ++E   I +   ++
Sbjct: 121 IGIRLIIENGKLKYNPLPIAMDKGCSICIKNIFYNIPAKRKFLKSSKLELKNIINEFYKL 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+++  ++F         + +       ++ ERI  + GE      +++ + +N + LQG
Sbjct: 181 ALSHNDINFYLENDNKILFDLKS----SSYKERIIHIFGEKIKKFLIKIKKTTNLVKLQG 236

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y   P + + N  + Y+F+N R +++K I   I T+Y   I     P   + L ++P + 
Sbjct: 237 YITNPKYYKSNKLEQYLFLNKRFIKNKNIHDAIITSYEGLINKKYNPSYFIFLTMEPSKF 296

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           ++N+ P+K+ ++F +   +   I  +I++ +  K IS
Sbjct: 297 NINISPSKTEVKFYDEICLCKQITSTIKECLGIKKIS 333


>gi|68482075|ref|XP_715055.1| hypothetical protein CaO19.7257 [Candida albicans SC5314]
 gi|46436660|gb|EAK96019.1| hypothetical protein CaO19.7257 [Candida albicans SC5314]
          Length = 636

 Score =  270 bits (690), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 122/625 (19%), Positives = 231/625 (36%), Gaps = 63/625 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E +I QI +  I       ++EL++NSLDA ++ +   I     S   I DNG G
Sbjct: 27  ILRLDESVITQIRSHTIFHSLDSVVRELLQNSLDAGANEITIKIDLSSLS-VYIHDNGTG 85

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-------N 115
           +T +++     +H TSK        H+  ++GEAL ++  +S+LT++S+ P        N
Sbjct: 86  ITPDDLEKVTLQHYTSK-------WHSHNYKGEALFALKVISNLTIISKAPDYTTPFKLN 138

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS--EQVETNLITDVIR 173
           N+ A++                 GT+V   ++F  IP R   +++         I   + 
Sbjct: 139 NSVAELYNEYSGGYFQIGDINPQGTVVIAANMFRNIPVRREQIRTTPHAKLVEAIKVAVL 198

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
                  +V+     +     +++           + Q+ G       V    K+ ++  
Sbjct: 199 ESLTPNARVNLKIFLVNHTTLQLDQIVAICGHSPLLFQLFGVKTKFEPVRAKFKNIKVV- 257

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTV-----QDKFILSTIRTAYAETI---------PLG 279
            G  G        A   YVF+N R V     + K +     ++    I         P  
Sbjct: 258 -GVIGREPIT---AKHQYVFVNDRRVTLSLGESKRLNDLFSSSGFNDIDFRTKTTGKPFY 313

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
           ++P  +  +    R+V  + +     +      II   I + + +    K + ++  + +
Sbjct: 314 KHPTFMFRVYPGKREVVQDSYTWNIVL-----RIIYKIIAKFLDRRQPPKPLLSTPPIHR 368

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE---NRLSTNDLLPSDDPTYSEDNDPV 396
                          L +              +E    R+ T   LP    +        
Sbjct: 369 TSDKYILTTKTKLGFLKENEIDGLVDNRPYHGKEAPLPRIPTIAHLPHQCTSTHTTPHLT 428

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                   +      Q+ + +I+    D LV++DQHA+ ER+  E+  Q+F S       
Sbjct: 429 SSQTNLAPEKFRVINQVDRKFILLAADDQLVVLDQHASDERIRVEQYLQEFVSQPNPGLR 488

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL--SKKNIPQLLR 514
           L +P    +   E  L  ++  + +  GI         + I  +P IL    ++  + L+
Sbjct: 489 LHSPIAFGVHASELMLFDQYAANFNSFGICYTT-DTAQVVITHLPLILLTKVEDDAEFLK 547

Query: 515 D-IIDEIID---------------SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           D ++    D                 T+Y L   I  ++ + AC  +I  G  +   EM 
Sbjct: 548 DSLLQHCYDLHDHVKRISPNFDNWFETSYHLPRIITELINSKACRSAIMFGDILTKDEMQ 607

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKL 583
            L+ ++ +     QC HGRP+ + +
Sbjct: 608 DLVNKLSRCKLPFQCAHGRPSIVPI 632


>gi|150951659|ref|XP_001388013.2| DNA mismatch repair [Scheffersomyces stipitis CBS 6054]
 gi|149388780|gb|EAZ63990.2| DNA mismatch repair [Pichia stipitis CBS 6054]
          Length = 634

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 128/641 (19%), Positives = 248/641 (38%), Gaps = 75/641 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL+ ++ +++ +  I    +  ++EL+ NSLDA++  VE  +     +  Q+ DNG 
Sbjct: 6   RIRKLNPQVSSELRSQTIFNSLASVVQELLRNSLDAQAKVVEIRLDLDSLA-VQVADNGV 64

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ M  +R+ TSK+    D   I T+G+RGEAL ++G VS L+++S+    +   
Sbjct: 65  GIPADDMSMVGERYHTSKLKQIKDLPFISTYGYRGEALYALGLVSRLSIVSKSDSGDVTF 124

Query: 120 QIAISGEKISSVRPVAMNP-------------GTIVEVRDLFFTIPARLNFLK--SEQVE 164
              IS    + V                    GTIV    L+  +P R   ++  S+   
Sbjct: 125 VRMISYNSNTEVYDYQNYTNDGFFRVEPIKKNGTIVTATGLYCNLPVRRQQIRAVSQFKI 184

Query: 165 TNLITDVIRRMAIAYPKVSFT------FSTIKSNRYKMNFQSTN--GNFPERISQVIGED 216
            + I  ++ +  + +P VS         S         +  +T    NF      + G+ 
Sbjct: 185 IDEIRHIVFQSLVKFPDVSIKVLRLDHDSLNPDILINYSPSNTRKTDNFACIFRNIYGKS 244

Query: 217 FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
            +     L  +   + L G+ G    +  +    Y+F NG     +     +   + E+ 
Sbjct: 245 VLPKFHTLEAEQRGLQLTGFVGTDPVS--SKRFQYIFFNGSLQGYETTRIAVNQTFKESR 302

Query: 277 PLGRYPVVVLLLEIDPRQVDVNV--HPAKSYIRFRNPTIIR-NFIIQSIQKAINKKGIST 333
                          P  V       P+K   R      +    I    + A  +    T
Sbjct: 303 FGD-----------IPESVSYRTGESPSKKRSRLSWVWPVFLVCIESVKKGATIEADEIT 351

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             V+         Q     +    + +   +       + +     +             
Sbjct: 352 KFVVKVFKQFLVSQGFQVDSGPSVFGSPRISLSPSKRRKTSPSGDEEPRVKKSDQLDSTF 411

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGL-----VIVDQHAAHERLIFEKMRQDF- 447
             V ES  T         Q+   +I+  +++ L     +++DQHA  ER+  E + +DF 
Sbjct: 412 LNVAESGLTSGNY-RIVRQLDSKFILVSSSNNLGGKVLLVIDQHACDERIKVEALFKDFI 470

Query: 448 ----NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
               ++    S  ++ P    +   E  L  E+ E+L++ GI+    G   I +  +P I
Sbjct: 471 FLVLDAHTNLSLRVVEPVTFAVSSVEVQLFEEYAENLNKFGIRFIIEGL-TIVVTHMPQI 529

Query: 504 -LSKKNI-PQLLRDII----DEIIDSSTT---------------YTLQDRIENILATMAC 542
            L K +I   +LR  +    +++ + S +                 L   + +I+ + AC
Sbjct: 530 ILEKSDIDADILRRWLLSHVNDLKEESKSAIVDTYSINDWFPFVRHLPTFLIDIINSKAC 589

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           + S+  G  ++  EM +++R++       QC HGRP+ + L
Sbjct: 590 HSSVVFGEVLEYSEMEKMVRQLLHCRLPFQCAHGRPSIVPL 630


>gi|332978303|gb|EGK15031.1| ATPase domain protein [Psychrobacter sp. 1501(2011)]
          Length = 645

 Score =  269 bits (688), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/423 (25%), Positives = 178/423 (42%), Gaps = 52/423 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+KL   ++NQ+AAGE++ RP+  +KELIEN++DA +  ++  I  GG    +++D+G 
Sbjct: 26  RIKKLPPLLVNQLAAGEVVTRPASVVKELIENAIDAGAKNIDIRITQGGMGVIEVSDDGC 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++ MAV R  TSKI+D      I T GFRGEAL +  AVS LTL S    +  G 
Sbjct: 86  GIHPNDMIMAVTRFATSKIADVAHLQGIATLGFRGEALAATAAVSRLTLTSCSDDSGIGR 145

Query: 120 QIAISG--EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           ++ ++G  +    + PV    GT+V VRDL+F +PAR   LKS   E   I  V++++A+
Sbjct: 146 ELNVAGILDDTPKLTPVVHARGTMVTVRDLYFNVPARRGNLKSISTEYAHIEMVVKQLAL 205

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN----------------------FPERISQVIGE 215
               VSF        R+      +  N                         R+  +I  
Sbjct: 206 VASDVSFNLWHNDKRRFNFESIGSADNSNYSFLGELTASESMPSVLRQSILARLLALIPT 265

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNAN---------------------QFYVFI 254
               + +        I +      P  +  ++                         ++I
Sbjct: 266 SHNQDELFSENNLQPININLEGLRPQHSWSDSGVEPLSINGFLIPSVKALANSSYKLIYI 325

Query: 255 NGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           NGR V+D+ I  +IR   A  +P       VL   +    +++NVHP+K  I+ +N   +
Sbjct: 326 NGRLVKDRRIAQSIRDCAAH-LPGIDSVGYVLFFNLPKAWLNLNVHPSKQCIKIQNLANV 384

Query: 315 RNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
              +   ++ A+            K + S +            Y  S    +  L  + N
Sbjct: 385 TAHLEVGVRDALELWRHRQP----KPVKSDYRTQTTMTRRTSSYEASNYKGKSSLVAESN 440

Query: 375 RLS 377
              
Sbjct: 441 NPP 443


>gi|27904987|ref|NP_778113.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396394|sp|Q89A38|MUTL_BUCBP RecName: Full=DNA mismatch repair protein mutL
 gi|27904385|gb|AAO27218.1| DNA mismatch repair protein MutL [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 597

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 124/526 (23%), Positives = 224/526 (42%), Gaps = 14/526 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L     + I+AGE+I  P+  +KEL+ENS+D+ ++ +   I  GG     + DNG
Sbjct: 1   MFIKILPLSTSSYISAGEVICNPASVVKELMENSIDSSATCIHIEIKKGGLQSIVVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NT 117
            G+   ++  ++  H TSKI    D +NI T GFRGEAL SI AVS + L S    +   
Sbjct: 61  CGIDKSDLKASLLHHATSKIYSVCDLNNITTLGFRGEALASISAVSRIILSSCNISSKKV 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           G  I   G   IS  + V  N GTI  V DLFF  P R   +KSE  E   I +++R ++
Sbjct: 121 GWSIYSDGFGVISVPKLVVHNKGTICTVLDLFFNRPVRQKTIKSEYSEFLRIDEIVRSLS 180

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           ++  K+S +           +  + +      ++ + G   +   V ++   N + + G+
Sbjct: 181 LSNNKLSVSLRHNDKLIRYYDNCNIDFCNINMLNAIYGLSSVIKVVPVDYFLNTMKITGW 240

Query: 237 TG-IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
              + +++       Y +INGR + ++ +   +  A +E          +L L+++  ++
Sbjct: 241 LYLLGSYHTSKKKFQYFYINGRIILNRSVHHAVYQAVSEINHYQYSVSYILYLKLNCNEL 300

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HPAK  I+  N  +I  FI Q+I  ++ K+ I            S ++      + 
Sbjct: 301 DVNIHPAKKIIKIINIRLIHVFICQAILYSLKKECILKKDCTKIIKNISNNKKKNNLNYN 360

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ----LGIACA 411
            +    +T+      +QEN  S    L + D     + +   +            G    
Sbjct: 361 FQSNLDITS----CIVQENSYSIPQKLFNLDNVSIIETELKFKRFKCKDYLNTIFGNVLM 416

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
            I   Y++ +  D L +     A   +   K++    +  +  +             E  
Sbjct: 417 VIKNFYLLIEKNDELFLFFLPRAKSLICELKLKFGVKNGLLIKKLRKKYFYFFKNNTEYH 476

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
             +   E L  +G+        A  +  IP ++   N+  ++ +I+
Sbjct: 477 FFLRFYEILSHVGLNFNITLKYA-ELNSIPFMIDDTNLGIIISEIL 521


>gi|50305373|ref|XP_452646.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641779|emb|CAH01497.1| KLLA0C10032p [Kluyveromyces lactis]
          Length = 704

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/688 (16%), Positives = 240/688 (34%), Gaps = 108/688 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L + + +++ + E +   +  ++EL++NS+DA++++++  I    +   ++ DNG
Sbjct: 1   MSIKRLDDTVSSRLKSHESVVSTTAVVRELVQNSVDADATKIKVDI-NTERFIIEVQDNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           FG+T  ++ +    + TSK+        I ++GFRGEAL  +   S + ++S+    +  
Sbjct: 60  FGITPSDLNLLGGHNITSKLESLQQLPAISSYGFRGEALHLMLQCSKVLIISKSKDYSGI 119

Query: 119 A-----QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL--KSEQVETNLITDV 171
                   A   ++           GT++++ D+F+  P R   +  +S     + I   
Sbjct: 120 WARELPAPAFISDEGKFPLMKGALSGTVIKISDVFYNYPVRRKMMEKQSISDLVSAIRTE 179

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQST----NGNFPERISQVIGEDFINNAV-ELNE 226
           I  + I +P +  +    +  R      ST              + GE      +  ++ 
Sbjct: 180 ILTVLIKFPTLDVSVFINQQLRISSIAVSTLEPYPKQLDTCFHNIFGEILPRKQLKFVSA 239

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET----------- 275
                T++G   I      + +  Y+FINGR   D    S +   +  T           
Sbjct: 240 SFKSHTVKGIVSINPI--QSKDYQYIFINGRKYSDSRFFSAVNKLFQSTKYVEKNWDSYS 297

Query: 276 -----IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
                 P   YP+ ++  E+     D+   P K+  +      +   I+  +   +   G
Sbjct: 298 VKSVGSPYSAYPLFIIGCEVPLEISDLIQDPGKTIFQSGTLKTLCPLILNVMSSFLKHLG 357

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE----KLFLQENRLSTNDLLPSDD 386
                 +S    SS+ +     T+  +   ++  T +        +       ++L S  
Sbjct: 358 YEPGVDVSTFDNSSYFETAHYFTNTKRVELAVKPTNKHANGNRVHKPQNNKVLEILKSPP 417

Query: 387 PTYSEDNDPVEESEATHYQLGIA------------------------------------- 409
            T    +  +E +                                               
Sbjct: 418 RTRGIFSRLLENTTGGRQCRDHHYDSEFDIQKLNLAGTESSYLKNHAVSDFKLSKSQIRN 477

Query: 410 ---CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL- 465
                Q+   +I+ ++   L+++DQHA HER++ E M ++     +          + + 
Sbjct: 478 FEVIQQVDLKFILVKSGGTLLMLDQHACHERILVENMLKETIIKCMNKCFNYVKLNMKMN 537

Query: 466 -LEGECALIMEHDEDLHRLGIKAERFGPNA----IAIREIPAILSKK---NIPQLLRDII 517
               E     E   +    GI  E    +     I + + P    +K   +   L   ++
Sbjct: 538 ISAEEAGWFRESIPEFDTWGIVLEIKDIDTRSSVIELIKAPEFFHEKIKHDSAFLKHVLL 597

Query: 518 DEIIDSSTTYT----------------------LQDRIENILATMACYGSIRSGRKMQSI 555
             I D  ++                        +      I+ + +C  +I  G  +   
Sbjct: 598 QHIYDLRSSKRRRITQLMKEQHSSNKWWIMVPHMPRVYTEIINSKSCRSAIMFGTSLSRT 657

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           E + ++ ++ K      C HGRP+ + +
Sbjct: 658 ECDVMISDLSKCQQPFHCAHGRPSVVPI 685


>gi|325526038|gb|EGD03708.1| DNA mismatch repair protein [Burkholderia sp. TJI49]
          Length = 243

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 9/227 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P+A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELPLALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADVAHATK 142

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +  ++ P A   GT +EVR+L+F  PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 143 I---DAQTGALSPAAGAVGTTIEVRELYFNTPARRKFLKSEQTEFGHCLEMIRRAALARP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
            V+ +           N         +R+++++G+ F    + L+E+
Sbjct: 200 DVAISVLHNGKAVEHWNATEP----AQRVAKILGDGFATAHLPLDEQ 242


>gi|193075082|gb|ACF08543.1| MutL [Pseudomonas aeruginosa]
 gi|193075084|gb|ACF08544.1| MutL [Pseudomonas aeruginosa]
 gi|193075086|gb|ACF08545.1| MutL [Pseudomonas aeruginosa]
 gi|193075090|gb|ACF08547.1| MutL [Pseudomonas aeruginosa]
 gi|193075094|gb|ACF08549.1| MutL [Pseudomonas aeruginosa]
 gi|193075096|gb|ACF08550.1| MutL [Pseudomonas aeruginosa]
 gi|193075100|gb|ACF08552.1| MutL [Pseudomonas aeruginosa]
 gi|193075102|gb|ACF08553.1| MutL [Pseudomonas aeruginosa]
 gi|193075104|gb|ACF08554.1| MutL [Pseudomonas aeruginosa]
 gi|193075106|gb|ACF08555.1| MutL [Pseudomonas aeruginosa]
 gi|193075108|gb|ACF08556.1| MutL [Pseudomonas aeruginosa]
 gi|193075110|gb|ACF08557.1| MutL [Pseudomonas aeruginosa]
 gi|193075116|gb|ACF08560.1| MutL [Pseudomonas aeruginosa]
 gi|193075122|gb|ACF08563.1| MutL [Pseudomonas aeruginosa]
 gi|193075128|gb|ACF08566.1| MutL [Pseudomonas aeruginosa]
 gi|193075130|gb|ACF08567.1| MutL [Pseudomonas aeruginosa]
 gi|193075132|gb|ACF08568.1| MutL [Pseudomonas aeruginosa]
 gi|193075134|gb|ACF08569.1| MutL [Pseudomonas aeruginosa]
 gi|193075136|gb|ACF08570.1| MutL [Pseudomonas aeruginosa]
 gi|193075138|gb|ACF08571.1| MutL [Pseudomonas aeruginosa]
 gi|193075140|gb|ACF08572.1| MutL [Pseudomonas aeruginosa]
 gi|193075142|gb|ACF08573.1| MutL [Pseudomonas aeruginosa]
 gi|193075146|gb|ACF08575.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  +RFR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVRFRDSRMV 274


>gi|193075112|gb|ACF08558.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEAQDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  +RFR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVRFRDSRVV 274


>gi|227529692|ref|ZP_03959741.1| DNA mismatch repair protein MutL [Lactobacillus vaginalis ATCC
           49540]
 gi|227350358|gb|EEJ40649.1| DNA mismatch repair protein MutL [Lactobacillus vaginalis ATCC
           49540]
          Length = 505

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/492 (21%), Positives = 201/492 (40%), Gaps = 61/492 (12%)

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN 219
           S Q E   ITD++ R+A+A P+V+F+ +       ++   + N N  + ++ + G     
Sbjct: 1   SPQTELARITDIVNRLALANPQVAFSLTHNNK---ELFRTAGNDNLQQVVAAIYGIQVGK 57

Query: 220 NAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG 279
             +    + N+  + G   +P   R +     + IN R +++  +   I   Y   + +G
Sbjct: 58  KMLPFAGEDNDFKISGLVSLPELTRASRQYITITINHRYIRNFELTKAIINGYESKLMVG 117

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV--- 336
           RYP+ VL +++DP  VDVNVHPAK  +R      +   I + I++ I+ + +        
Sbjct: 118 RYPIAVLNIQLDPVLVDVNVHPAKREVRLSKEPQLAGLIAKVIRQRISTENLIPDVDAKQ 177

Query: 337 ----------LSKKMISSFHQDNAPKTHL------------------------------- 355
                     L +++  +  Q   P T+                                
Sbjct: 178 FIPDEPDVDELERQLNEAAKQYETPATNFVHPSASSSSTSGIKNGGPADVDAADSIVHEP 237

Query: 356 ------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-------ESEAT 402
                  + A+S     ++ +L E             P      + +E       +    
Sbjct: 238 VVIHKKDELASSQMQKFDQRYLDEGIAYPFGSPDEQAPQKPTRAESIELDVRDKSDQSQK 297

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +       Q+   ++++Q  DGL IVDQHAA ER+ +EK R++        QT L P +
Sbjct: 298 RFPDLQYIGQLQGTFLLAQAGDGLYIVDQHAAQERINYEKFRKEIGQVSDDQQTFLVPLV 357

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
           ++    +   I +H + L  +G+  E FGPN+  +R  P   ++       +++I+ +I+
Sbjct: 358 LNYSTVDTMTITQHLDTLEAVGLHLESFGPNSFILRSHPTWFAEGQEEATAKEMIEWLIN 417

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                ++ D  +     M+C  +I++   +   E   LL  + K  N   C HGRP  + 
Sbjct: 418 DGKI-SVHDFRQRTAIMMSCKRAIKANHHLDDREAKALLHRLPKCENPFNCPHGRPVTVH 476

Query: 583 LKLSDIEKLFGR 594
               D+EK+F R
Sbjct: 477 FNDRDLEKMFKR 488


>gi|193075144|gb|ACF08574.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  +RFR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVRFRDSRVV 274


>gi|193075098|gb|ACF08551.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 154/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  + FR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVSFRDSRMV 274


>gi|123400320|ref|XP_001301639.1| ATPase [Trichomonas vaginalis G3]
 gi|121882844|gb|EAX88709.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 585

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/590 (22%), Positives = 245/590 (41%), Gaps = 28/590 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L +     + A E I  P+ A++E+IEN  DA  + +   +  GG     ++DNG G+
Sbjct: 2   KTLGKHDSTMVRATETISSPAHALREMIENVFDAGCTLLTIRVGNGGLDHISVSDNGPGI 61

Query: 64  TSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           T E + M      TSK    D S     G RG AL +I  +S+LT+ +    +N G ++ 
Sbjct: 62  TEEGLSMICDEGVTSKEFGKDVS-----GGRGRALEAISYLSYLTIDTCTDNSNNGWRLQ 116

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPK 181
                   +  +    GT V  + LF+  P R ++  + +  + + I ++ +  AIA   
Sbjct: 117 FDENHTRKMEKITRPKGTTVTAQTLFYGQPVRRHYFLEHKSQQVSDIIEITQSFAIAS-S 175

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            + T +       +++    +          I + F +  V L++  +E +L+ YT  PT
Sbjct: 176 ANMTVTLDNKLLIQVSTPKRDSRISTVFGSDIMKGFEHGEVSLDKWHSEASLEYYTATPT 235

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            N          +N R      +   I+  +       + P  V  +       D   + 
Sbjct: 236 ANSNKK--ILFIVNNRPCVCSGLYRAIKNEFR-LCAGPKLPSGVFFITAPRNTFDFIPNS 292

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
               I F +       + ++  + ++     +S  L+   + S      P   LP+  T 
Sbjct: 293 PLISISFEHEN----ILQKTFCEILSSVWKKSSEKLTFNNVISEE----PIRSLPQM-TR 343

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQNYI 418
           L NT+        + +T+D+L       +   D     +  E   ++      Q +Q++I
Sbjct: 344 LKNTESLGIECHCQATTDDILERFKNCQNYVPDYGLSYDAIETKAFKDMEIIGQWNQSFI 403

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I++    +  +DQHAA E   FEK+R+      I SQ L++P +I     E +   E  +
Sbjct: 404 ITKYGCDIYAIDQHAAMEAQNFEKLRKKC---SIQSQRLISPIVISATPQEISAAEECKQ 460

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
                G   +    N+I +++IP+I +       L ++I  + +S  +  +  +    +A
Sbjct: 461 KCKEFGYDYD-ISDNSIHVKKIPSITTVATGSDDLLELITMLHESPASQPMTRKARIWMA 519

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLSD 587
             AC+ S+R G  M   +M  LL  M ++     C HGRPT+ ++  L +
Sbjct: 520 YRACHSSVRVGDTMNHSQMKDLLNRMAQSDFPWNCPHGRPTWCEIWSLQE 569


>gi|289549216|ref|YP_003474204.1| DNA mismatch repair protein MutL [Thermocrinis albus DSM 14484]
 gi|289182833|gb|ADC90077.1| DNA mismatch repair protein MutL [Thermocrinis albus DSM 14484]
          Length = 426

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/323 (33%), Positives = 166/323 (51%), Gaps = 19/323 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI  L   +   IAAGE+I+ P+  +KEL+ENSLDA + R+E  I  GGK + ++ D+G
Sbjct: 1   MKIEILPPDVRACIAAGEVIDSPADCVKELVENSLDASAKRIEVEIVKGGKRYIRVKDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+ V    TSKI   +D  +  T+GFRGEAL +I  VS + + SR    + G
Sbjct: 61  TGIPPEDLPLVVLEGATSKIRRLEDLMHTTTYGFRGEALHAISKVSRMVISSRYFSEDVG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ I G ++  +    M  GT VEV DLF+ +P R  FLK E  E N IT +I+  A+A
Sbjct: 121 REMRIEGGQVKEITQRGMGIGTQVEVFDLFYNLPVRQKFLKKEDTERNRITKLIKLYAMA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V+F   +       +       +  + I  +  E F     E      ++ L    G
Sbjct: 181 RPDVAFRLISEGKELLALPPAHHIAHRLQEIYNMPFETF-----ERESNGVKVRLSVSVG 235

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                     + ++ +NGR V +K +L  IR        +G   V +  +EI P  +DVN
Sbjct: 236 N------KTGEVFLVVNGRPVYNKNLLEYIRR------HVGYRKVCLCEVEIPPFLLDVN 283

Query: 299 VHPAKSYIRFRNPTIIRNFIIQS 321
           VHP K  +RF   +++++ I +S
Sbjct: 284 VHPKKREVRFLKESLVKDLIKES 306



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ AC  +I++G +++  ++  LL+      N   C HGRP + KL + +I +   R
Sbjct: 367 SSKACREAIKAGDRVEIPQLVELLKRWTSFQNREVCPHGRPIYFKLSIGEIYRQLDR 423


>gi|193075114|gb|ACF08559.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P+ VL  E+DP  VDVNVHP K  +RF +  ++
Sbjct: 241 HPIFVLFFEVDPAVVDVNVHPTKHEVRFPDSRVV 274


>gi|193075118|gb|ACF08561.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 154/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  + FR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVGFRDSRMV 274


>gi|213027073|ref|ZP_03341520.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 172

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/171 (46%), Positives = 109/171 (63%), Gaps = 3/171 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
            Q    G  +  +V+P A   GT +EV DLF+  PAR  F+++E+ E N I
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKFMRTEKTEFNHI 171


>gi|84784024|gb|ABC61977.1| PMS1-like protein [Trichomonas vaginalis]
          Length = 585

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 133/590 (22%), Positives = 245/590 (41%), Gaps = 28/590 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + LS+     + A E I  P+ A++E+IEN  DA  + + T +  GG     ++DNG G+
Sbjct: 2   KTLSKHDSTMVRATETISSPAHALREMIENVFDAGCTLLTTRVGNGGLDHISVSDNGPGI 61

Query: 64  TSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + E + M      TSK    D S     G RG AL +I  +S+LT+ +    +N G ++ 
Sbjct: 62  SEEGLSMICDEGVTSKEFGKDVS-----GGRGRALEAISYLSYLTIDTCTDNSNNGWRLQ 116

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPK 181
                   +  +    GT V  + LF+  P R  +  + +  + + I ++ +  AIA   
Sbjct: 117 FDENHTRKMEKITRPKGTTVTAQTLFYGQPVRRRYFLEHKSQQVSDIIEITQSFAIAS-S 175

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            + T +       +++    +          I + F +  V L++   E +L+ YT  PT
Sbjct: 176 ANMTVTLDNKLLIQVSTPKRDSRISTVFGSDIMKGFEHGEVSLDKWHPEASLEYYTATPT 235

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            N          +N R      +   I+  +       + P  V  +       D   + 
Sbjct: 236 ANSNKK--ILFIVNNRPCVCSGLYRAIKNEFR-LCAGPKLPSGVFFITAPRNTFDFIPNS 292

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
               I F +       + ++  + ++     +S  L+   + S      P   LP+  T 
Sbjct: 293 PLISISFEHEN----ILQKTFCEILSSVWKKSSEKLTFNNVISEE----PIRSLPQM-TR 343

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQNYI 418
           L NT+        + +T+D+L       +   D     +  E   ++      Q +Q++I
Sbjct: 344 LKNTEPLGIECHCQATTDDILERFKNCQNYVPDYGLSYDAIETKAFKDMEIIGQWNQSFI 403

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I++    +  +DQHAA E   FEK+R+      I SQ L++P +I     E +   E  +
Sbjct: 404 ITKYGCDIYAIDQHAAMEAQNFEKLRKKC---SIQSQRLISPIVISATPQEISAAEECKQ 460

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
                G   +    N+I +++IP+I +       L ++I  + +S  +  +  +    +A
Sbjct: 461 KCKEFGYDYD-ISDNSIHVKKIPSITTVATGSDDLLELITMLHESPASQPMTRKARIWMA 519

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLSD 587
             AC+ S+R G  M   +M  LL  M ++     C HGRPT+ ++  L +
Sbjct: 520 YRACHSSVRVGDTMNHSQMKDLLNRMAQSDFPWNCPHGRPTWCEIWSLQE 569


>gi|193075092|gb|ACF08548.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 154/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLDNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  + FR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVLFRDSRMV 274


>gi|193075148|gb|ACF08576.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 154/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  +R R+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVRLRDSRMV 274


>gi|259149992|emb|CAY86795.1| Mlh3p [Saccharomyces cerevisiae EC1118]
 gi|323346146|gb|EGA80436.1| Mlh3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 715

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 118/711 (16%), Positives = 239/711 (33%), Gaps = 134/711 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL   +  ++ +       + A++E+++NS+DA ++ ++ +I     SF  + D+G G
Sbjct: 5   IRKLDSDVSERLKSQACTVSLASAVREIVQNSVDAHATTIDVMIDLPNLSF-AVYDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T  ++ +   ++ TSKI   +D   + T+G+RG+AL SI  VS L + S+    N+   
Sbjct: 64  LTRSDLNILATQNYTSKIRKMNDLVTMKTYGYRGDALYSISNVSKLFVCSKKKDYNSAWM 123

Query: 121 IAISGEKISSVRPVAMN--------------PGTIVEVRDLFFTIPARLNFLK--SEQVE 164
                + +       +                GT+V V D+ + +P R   LK       
Sbjct: 124 RKFPSKSVMLSENTILPIDPFWKICPWSRTKSGTVVIVEDMLYNLPVRRRILKEEPPFKT 183

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF----------QSTNGNFPERISQVIG 214
            N I   + ++ + +P +S         R                + +    + +  V G
Sbjct: 184 FNTIKADMLQILVMHPMISLNVQYTDKLRINTEVLFRSKNITEGLTKHQQMSQVLRNVFG 243

Query: 215 EDFINNAVELNE-KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---- 269
                + ++    K NE  ++G            +  +++INGR   D+     +     
Sbjct: 244 AIIPPDMLKKVSLKFNEYQIEGIISKMPV--RLKDLQFIYINGRRYADRAFQGYVDSLFQ 301

Query: 270 -----TAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                      +       P   +PV +L +       D+   PAK  ++  +   I   
Sbjct: 302 AQDFGEKGMSLLKTKSVGKPYRSHPVFILDVRCPQTIDDLLQDPAKKIVKPSHIRTIEPL 361

Query: 318 IIQSIQKAI--------------------------------------------------N 327
           I+++I+  +                                                  N
Sbjct: 362 IVKTIRSFLTFQGYLTPDKSDSSFEIVNCSQKTATLPNSRSQLSKRNQVLNSKMKIARIN 421

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                      +   S+ + +      +    +SL N               D +     
Sbjct: 422 SYIGKPVVNGCRINNSTINYEKIKNIRIDGQKSSLRNKLSSRPYDSGFTEDYDSIGKTIT 481

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +S     + + E  +         I            LV+VDQHA  ER+  E++    
Sbjct: 482 DFSISRSVLAKYEVINQVDKKFI-LIRCLDQSIHNCPLLVLVDQHACDERIRLEELFYSL 540

Query: 448 NSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREI 500
            +  +T       L    I++   E  L   +  +  + GI  E          + I+ +
Sbjct: 541 LTEVVTGTFVARDLKDCCIEVDRTEADLFKHYQSEFKKWGIGYETIEGTMETSLLEIKTL 600

Query: 501 PAILSK--------------------KNIPQLLRDI--------IDEIIDSSTTYTLQDR 532
           P +L+                     K+  +L  D+        +D++     +  +   
Sbjct: 601 PEMLTSKYNGDKDYLKMVLLQHAHDLKDFKKLPMDLSHFENYTSVDKLYWWKYSSCVPTV 660

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  ++  G ++   E   L+ ++ +  N  +C HGRP+ + +
Sbjct: 661 FHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPI 711


>gi|151942635|gb|EDN60981.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 715

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 118/711 (16%), Positives = 239/711 (33%), Gaps = 134/711 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL   +  ++ +       + A++E+++NS+DA ++ ++ +I     SF  + D+G G
Sbjct: 5   IRKLDSDVSERLKSQACTVSLASAVREIVQNSVDAHATTIDVMIDLPNLSF-AVYDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T  ++ +   ++ TSKI   +D   + T+G+RG+AL SI  VS L + S+    N+   
Sbjct: 64  LTRSDLNILATQNYTSKIRKMNDLVTMKTYGYRGDALYSISNVSKLFVCSKKKDYNSAWM 123

Query: 121 IAISGEKISSVRPVAMN--------------PGTIVEVRDLFFTIPARLNFLK--SEQVE 164
                + +       +                GT+V V D+ + +P R   LK       
Sbjct: 124 RKFPSKSVMLSENTILPIDPFWKICAWSRTKSGTVVIVEDMLYNLPVRRRILKEEPPFKT 183

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF----------QSTNGNFPERISQVIG 214
            N I   + ++ + +P +S         R                + +    + +  V G
Sbjct: 184 FNTIKADMLQILVMHPMISLNVQYTDKLRINTEVLFRSKNITEGLTKHQQMSQVLRNVFG 243

Query: 215 EDFINNAVELNE-KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---- 269
                + ++    K NE  ++G            +  +++INGR   D      +     
Sbjct: 244 AIIPPDMLKKVSLKFNEYQIEGIISKMPV--RLKDLQFIYINGRRYADSAFQGYVDSLFQ 301

Query: 270 -----TAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                      +       P   +PV +L +       D+   PAK  ++  +   I   
Sbjct: 302 AQDFGEKGMSLLKTKSVGKPYRSHPVFILDVRCPQTIDDLLQDPAKKIVKPSHIRTIEPL 361

Query: 318 IIQSIQKAI--------------------------------------------------N 327
           I+++I+  +                                                  N
Sbjct: 362 IVKTIRSFLTFQGYLTPDKSDSSFEIVNCSQKTATLPDSRIQISKRNQVLNSKMKIARIN 421

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                      +   S+ + +      +    +SL N               D +     
Sbjct: 422 SYIGKPVVNGCRINNSTINYEKIKNIRIDGQKSSLRNKLSSRPYDSGFTEDYDSIGKTIT 481

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +S     + + E  +         I            LV+VDQHA  ER+  E++    
Sbjct: 482 DFSISRSVLAKYEVINQVDKKFI-LIRCLDQSIHNCPLLVLVDQHACDERIRLEELFYSL 540

Query: 448 NSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREI 500
            +  +T       L    I++   E  L   +  +  + GI  E          + I+ +
Sbjct: 541 LTEVVTGTFVARDLKDCCIEVDRTEADLFKHYQSEFKKWGIGYETIEGTMETSLLEIKTL 600

Query: 501 PAILSK--------------------KNIPQLLRDI--------IDEIIDSSTTYTLQDR 532
           P +L+                     K++ +L  D+        +D++     +  +   
Sbjct: 601 PEMLTSKYNGDKDYLKMVLLQHAHDLKDLKKLPMDLSHFENYTSVDKLYWWKYSSCVPTV 660

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  ++  G ++   E   L+ ++ +  N  +C HGRP+ + +
Sbjct: 661 FHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPI 711


>gi|193075126|gb|ACF08565.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 155/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRAADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  +RFR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVRFRDSRMV 274


>gi|254436265|ref|ZP_05049772.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Nitrosococcus oceani AFC27]
 gi|207089376|gb|EDZ66648.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Nitrosococcus oceani AFC27]
          Length = 244

 Score =  266 bits (681), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/238 (34%), Positives = 134/238 (56%), Gaps = 6/238 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   + NQIAAGE++ERP+  +KEL+EN+LDA + R+E     GG    ++ D+G 
Sbjct: 8   RIQILPPALANQIAAGEVVERPASVLKELVENALDAGAQRIEIETEAGGIGLIRVRDDGC 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+A+  H TSK+   ++  NI T GFRGEAL SI AVS L+L SR   N  G 
Sbjct: 68  GIHHNDLPLALSSHATSKVRHGEELLNITTLGFRGEALASIDAVSRLSLSSRMADNEHGW 127

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I     + + V+P+A   GT VEVRDLF+  PAR  FL+ E+ E   +  +  ++A+++
Sbjct: 128 CIR----ENTPVQPIAHPLGTTVEVRDLFYNTPARRRFLRGEKTEFIRLRTIQTQLALSH 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            ++SF  S  +     +   +      +RI+++ G +F  +++    +       G  
Sbjct: 184 FEISFRISYNRRPFLTLPACTCPPEQLKRITELCGRNFAEHSMYFKREIERAMPMGLV 241


>gi|193075088|gb|ACF08546.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 154/274 (56%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  +DVNVHP K  + FR+  ++
Sbjct: 241 HPTFVLFFEVDPAVLDVNVHPTKHEVGFRDSRMV 274


>gi|148652628|ref|YP_001279721.1| ATPase domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571712|gb|ABQ93771.1| ATP-binding region, ATPase domain protein domain protein
           [Psychrobacter sp. PRwf-1]
          Length = 650

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 104/473 (21%), Positives = 193/473 (40%), Gaps = 61/473 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+KL   ++NQ+AAGE++ RP+  +KELIEN+LDA + +++  I  GG    ++ D+G 
Sbjct: 27  RIKKLPPLLVNQLAAGEVVTRPASVVKELIENALDAGARQIDVRITQGGMGIIEVADDGC 86

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ MAV R  TSKI+D      I T GFRGEAL +  AVS LTL S    +  G 
Sbjct: 87  GIHPEDMVMAVTRFATSKIADVAHLQGIATLGFRGEALAATAAVSRLTLTSCCDDSGIGR 146

Query: 120 QIAISGE--KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++G       + PV    GT V V+DL+F +PAR   LK+   E   I  V++++A+
Sbjct: 147 QLNVAGILEDTPQLVPVVHRRGTTVSVKDLYFNVPARRGNLKAISTEFMHIETVVKQLAL 206

Query: 178 AYPKVSFTFSTIKSNRYKMNFQST----------------------NGNFPERISQVIGE 215
               VSF+       R+     +                             R+  V+  
Sbjct: 207 VASDVSFSLWHNDKRRFNFAAINAEPSSPLTVSSSNLASEALSTQVMQALLTRLKSVLPP 266

Query: 216 DFINNAVELNE------------------------KSNEITLQGYTGIPTFNRGNANQFY 251
                ++  +                             + ++G     T    N     
Sbjct: 267 SHEQASLLHDNNLQVLSLDLEALRVQYEGMRGINRSQEPLGIEGLIIPSTKALANHPYKL 326

Query: 252 VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP 311
           ++INGR V+DK I  ++R +      +      VL   +    +++NVHP+K  I+ +N 
Sbjct: 327 IYINGRLVKDKRIAQSLRESINGFDHIA-SLGYVLFFNLPKAWLNLNVHPSKLCIKIQNL 385

Query: 312 TIIRNFIIQSIQKAINKKGIS----------TSSVLSKKMISSFHQDNAPKTHLPKYATS 361
             +       +++A+ +                  ++ +      Q ++ +  + + +  
Sbjct: 386 ANVMAHFEVGVREALQRWQKRQPIIQPIVQPPQYQINAQASVQVAQSHSHQISVSQGSKR 445

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           +  +    +   +  + ++          + N+ +   +   +      +  H
Sbjct: 446 IAPSNHIDYPHNSSATASETTVPQLKQPVQTNESIAYYQTQGHHGQYTQSHPH 498


>gi|193075124|gb|ACF08564.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 153/274 (55%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   G  VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGPSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + +           R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALQEAKDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  +RFR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVRFRDSRMV 274


>gi|213019733|ref|ZP_03335538.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994774|gb|EEB55417.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 429

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 144/438 (32%), Positives = 239/438 (54%), Gaps = 25/438 (5%)

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +  +A+    + FT ++      K   Q++  N    I     ++F +N++E+ E+   I
Sbjct: 1   MNNLAMINYSIGFTLTSGNKKLLKYVKQTSLFNRLCEIE----KEFQSNSLEVKEEEEGI 56

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L+G+   P  NRGN+ Q Y F+NGR ++D  ++  IR AY + IP  RYP  VL LE+ 
Sbjct: 57  KLKGHICKPNVNRGNSTQIYTFVNGRPMKDNLLVGAIRYAYHDFIPNNRYPFAVLHLEVP 116

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-----SSFH 346
             QVDVNVHP KS +RF+N  +I   + + I K ++ +  +    + +++I     S   
Sbjct: 117 YDQVDVNVHPNKSEVRFQNKRLIYEIVRRGIIKTLSTRFAAGDQGIEEELIFNDSKSQEQ 176

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQE------NRLSTNDLLPSDDPTYSEDNDPVEESE 400
            D+  K    ++     +  E   ++E       R S  +     +    +    +E  +
Sbjct: 177 IDSQEKKDQKEFYEKRPSLLENRLMKEFNAPDERRQSLPETFKYGESPPQKGTMVLERKQ 236

Query: 401 AT---HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                 + LG A  Q++  YII++    L+IVDQHAAHERLI+E +      T I  Q  
Sbjct: 237 IDLIADHPLGYARCQVYNTYIIAEAKGKLIIVDQHAAHERLIYECL------TSIKRQKF 290

Query: 458 LTPEIIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           L PE +++  +    ++  + + L  +G   E    + + ++EIPAIL   N+ +++ +I
Sbjct: 291 LLPETVEIKNQAGMEMVGMYKDRLFEMGFGIEIESEDKVRVKEIPAILGTINVKEMVMNI 350

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +D +++   T  +++++  ILAT+AC+GSIR+GR M+  EMN L+R+ME+ P + QCNHG
Sbjct: 351 VDRLMEIGDTLPIEEKVNKILATIACHGSIRAGRAMKLEEMNELMRQMEETPYAGQCNHG 410

Query: 577 RPTFIKLKLSDIEKLFGR 594
           RPT+I++KLSDIEKLF R
Sbjct: 411 RPTYIEMKLSDIEKLFER 428


>gi|193075120|gb|ACF08562.1| MutL [Pseudomonas aeruginosa]
          Length = 274

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/274 (35%), Positives = 153/274 (55%), Gaps = 3/274 (1%)

Query: 44  TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIG 101
             +  GG    ++ D+G G+ ++++P+A+ RH TSKI +  D   + + GFRGEAL SI 
Sbjct: 1   VEVEQGGIKLLRVRDDGRGIPADDLPLALARHATSKIRELEDLERVMSLGFRGEALASIS 60

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           +V+ LT+ SR        Q+   G  +    +P A   GT VEVRDLFF  PAR  FL++
Sbjct: 61  SVARLTMTSRTADAGEAWQVETEGRDMQPRVQPAAHPVGTSVEVRDLFFNTPARRKFLRA 120

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           E+ E + + +VI+R+A+A   V+F         + ++          R+  V G+ F+  
Sbjct: 121 EKTEFDHLQEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQ 180

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           A+ +  + N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +  AY + +  GR
Sbjct: 181 ALPIEVERNGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVPQAYRDVLYNGR 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           +P  VL  E+DP  VDVNVHP K  + FR+  ++
Sbjct: 241 HPTFVLFFEVDPAVVDVNVHPTKHEVGFRDSRMV 274


>gi|15606703|ref|NP_214083.1| DNA mismatch repair protein MutL [Aquifex aeolicus VF5]
 gi|3914081|sp|O67518|MUTL_AQUAE RecName: Full=DNA mismatch repair protein mutL
 gi|2983934|gb|AAC07483.1| DNA mismatch repair protein MutL [Aquifex aeolicus VF5]
          Length = 425

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/321 (35%), Positives = 160/321 (49%), Gaps = 20/321 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M ++ L  ++   IAAGE+IE P   +KEL+ENSLDA++++VE  I  GGK   ++ DNG
Sbjct: 1   MFVKLLPPEVRKVIAAGEVIESPVDVVKELVENSLDAKATKVEVEIVKGGKRLIRVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++   V +  TSKI    D  NI T+GFRGEAL SI +VS   L SR  Q   G
Sbjct: 61  TGIHPEDVEKVVLQGATSKIETEKDLMNISTYGFRGEALYSISSVSKFKLRSRFFQEKEG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I +    I   R V M  GT VEVRDLFF +P R  FLK E  E   + ++I+  A+ 
Sbjct: 121 KEIEVEAGNILGTRRVGMPVGTEVEVRDLFFNLPVRRKFLKKEDTERRKVLELIKEYALT 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P+V FT  +      K+       +  ER+ +V    F     EL  +   ITL+ +  
Sbjct: 181 NPEVEFTLFSEGRETLKLK----KSSLKERVEEV----FQTKTEELYAEREGITLRAFVS 232

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                       YVFIN R +Q+K +   +R  +      G   +VVL  E+ P  VD N
Sbjct: 233 RNQRQGKY----YVFINKRPIQNKNLKEFLRKVF------GYKTLVVLYAELPPFMVDFN 282

Query: 299 VHPAKSYIRFRNPTIIRNFII 319
           VHP K  +           + 
Sbjct: 283 VHPKKKEVNILKERKFLELVR 303



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 503 ILSKKNIPQ-LLRDIIDEIIDSSTTYTLQDRIE-NILA--TMACYGSIRSGRKMQSIEMN 558
           IL + +    L++D   E +     + L++RI    L    +AC  S+++G+K+   ++ 
Sbjct: 330 ILGQMDETFILVKD--SEYLYFVDQHLLEERINYEKLKDENLACRISVKAGQKLSEEKIR 387

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            L++      N   C HGRP + K+ L +I +  GR
Sbjct: 388 ELIKTWRNLENPHVCPHGRPIYYKIPLREIYEKVGR 423


>gi|6325093|ref|NP_015161.1| Mlh3p [Saccharomyces cerevisiae S288c]
 gi|74627261|sp|Q12083|MLH3_YEAST RecName: Full=DNA mismatch repair protein MLH3; AltName: Full=MutL
           protein homolog 3
 gi|1370348|emb|CAA97869.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1403545|emb|CAA65557.1| P2550 protein [Saccharomyces cerevisiae]
 gi|285815378|tpg|DAA11270.1| TPA: Mlh3p [Saccharomyces cerevisiae S288c]
          Length = 715

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 117/711 (16%), Positives = 239/711 (33%), Gaps = 134/711 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL   +  ++ +       + A++E+++NS+DA ++ ++ +I     SF  + D+G G
Sbjct: 5   IRKLDSDVSERLKSQACTVSLASAVREIVQNSVDAHATTIDVMIDLPNLSF-AVYDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T  ++ +   ++ TSKI   +D   + T+G+RG+AL SI  VS+L + S+    N+   
Sbjct: 64  LTRSDLNILATQNYTSKIRKMNDLVTMKTYGYRGDALYSISNVSNLFVCSKKKDYNSAWM 123

Query: 121 IAISGEKISSVRPVAMN--------------PGTIVEVRDLFFTIPARLNFLK--SEQVE 164
                + +       +                GT+V V D+ + +P R   LK       
Sbjct: 124 RKFPSKSVMLSENTILPIDPFWKICPWSRTKSGTVVIVEDMLYNLPVRRRILKEEPPFKT 183

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF----------QSTNGNFPERISQVIG 214
            N I   + ++ + +P +S         R                + +    + +  V G
Sbjct: 184 FNTIKADMLQILVMHPMISLNVQYTDKLRINTEVLFRSKNITEGLTKHQQMSQVLRNVFG 243

Query: 215 EDFINNAVELNE-KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---- 269
                + ++    K NE  ++G            +  +++INGR   D      +     
Sbjct: 244 AIIPPDMLKKVSLKFNEYQIEGIISKMPVG--LKDLQFIYINGRRYADSAFQGYVDSLFQ 301

Query: 270 -----TAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                      +       P   +PV +L +       D+   PAK  ++  +   I   
Sbjct: 302 AQDFGEKGMSLLKTKSVGKPYRSHPVFILDVRCPQTIDDLLQDPAKKIVKPSHIRTIEPL 361

Query: 318 IIQSIQKAI--------------------------------------------------N 327
           I+++I+  +                                                  N
Sbjct: 362 IVKTIRSFLTFQGYLTPDKSDSSFEIVNCSQKTATLPDSRIQISKRNQVLNSKMKIARIN 421

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                 +    +   S+ + +      +    + L N               D +     
Sbjct: 422 SYIGKPAVNGCRINNSTINYEKIKNIRIDGQKSRLRNKLSSRPYDSGFTEDYDSIGKTIT 481

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +S     + + E  +         I            LV+VDQHA  ER+  E++    
Sbjct: 482 DFSISRSVLAKYEVINQVDKKFI-LIRCLDQSIHNCPLLVLVDQHACDERIRLEELFYSL 540

Query: 448 NSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREI 500
            +  +T       L    I++   E  L   +  +  + GI  E          + I+ +
Sbjct: 541 LTEVVTGTFVARDLKDCCIEVDRTEADLFKHYQSEFKKWGIGYETIEGTMETSLLEIKTL 600

Query: 501 PAILSK--------------------KNIPQLLRDI--------IDEIIDSSTTYTLQDR 532
           P +L+                     K+  +L  D+        +D++     +  +   
Sbjct: 601 PEMLTSKYNGDKDYLKMVLLQHAHDLKDFKKLPMDLSHFENYTSVDKLYWWKYSSCVPTV 660

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  ++  G ++   E   L+ ++ +  N  +C HGRP+ + +
Sbjct: 661 FHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPI 711


>gi|313637913|gb|EFS03231.1| DNA mismatch repair protein MutL [Listeria seeligeri FSL S4-171]
          Length = 215

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 131/218 (60%), Gaps = 8/218 (3%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I D
Sbjct: 1   MTKNIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G+  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHLTL +     +
Sbjct: 61  NGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLTLETST-GES 119

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            G  I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A
Sbjct: 120 KGTTISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG 214
           +A+P +SF FS        +   + NG+  + I+ + G
Sbjct: 180 LAHPNISFRFSHNGKP---LLQTNGNGDLRQVIAAIYG 214


>gi|309807406|ref|ZP_07701369.1| putative DNA mismatch repair protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308169328|gb|EFO71383.1| putative DNA mismatch repair protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 246

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/248 (35%), Positives = 131/248 (52%), Gaps = 6/248 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA S+R++      G     + DNG 
Sbjct: 3   KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAGSTRIKIDFIDAGLKQIMVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++EI +A  RH TSKI+   D  NI T GFRGEAL SI AV+ + +++       G 
Sbjct: 63  GIAADEIDLAFMRHATSKINTNHDLFNIATLGFRGEALASIAAVAKVDIVTNT-GGVNGI 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                         +A   GT + VRDLF   PARL +LKSE+ E   I D++ R+A+ Y
Sbjct: 122 HAIFEDGNKVKQEAIASPQGTKIVVRDLFHNTPARLKYLKSERTEIMKIVDIVNRLALGY 181

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P+VSF  +   + + ++   + + +  +  + + G       + +  +S +  + G    
Sbjct: 182 PQVSFELT---NRQKQLLKTTGHDDLRQTAANIYGIKVAEKMLAIYAQSPDFKIAGLISR 238

Query: 240 PTFNRGNA 247
               R   
Sbjct: 239 ADDTRSTR 246


>gi|163781651|ref|ZP_02176651.1| DNA mismatch repair protein MutL [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882871|gb|EDP76375.1| DNA mismatch repair protein MutL [Hydrogenivirga sp. 128-5-R1-1]
          Length = 428

 Score =  263 bits (673), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 119/445 (26%), Positives = 192/445 (43%), Gaps = 23/445 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M ++ L  ++ ++IAAGE+IE P+  +KEL+ENSLDA ++RVE  I+ GGK    + DNG
Sbjct: 1   MFVKILPHQVRSKIAAGEVIESPADVVKELVENSLDANATRVEVDISKGGKRLILVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E+I   V    TSKI    D  NI ++GFRGEAL SI +VS LT+ SR  Q   G
Sbjct: 61  TGIHPEDIDKVVLEGATSKIGSEKDLMNISSYGFRGEALYSIASVSRLTIRSRYFQEKEG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            ++ + G ++ S   V M  GT VEVRDLFF +PAR  FLK E  E   + ++IR  A+A
Sbjct: 121 YEVEVEGGEVVSKSKVGMPVGTEVEVRDLFFNLPARRKFLKREDTERRRVINLIREYALA 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P V F   +       +   S      + + +            +  +   + L+ Y  
Sbjct: 181 NPDVGFILFSNAREVLNLRPASERERAEDVLGE--------RLEPIRGEREFLRLRAYVK 232

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                  +  +F++F+N R V  K +   +R         G   + V+ LE+ P  VD N
Sbjct: 233 RN----VSRGEFHLFVNSRPVSSKGMKDFLRKTL------GYKTLGVVFLELPPFMVDFN 282

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           VHP K  ++F     +   +   +     +       +   +              L + 
Sbjct: 283 VHPKKREVKFLKERKVLALMRSMLGGRETEFFTLEQEIAPYETEFRILGQLNDTVILAQR 342

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
              L    + L  +  R +   L    +         ++  E    +      ++ +   
Sbjct: 343 GDYLYFFDQHLISE--RANYEKLKGKPEADQIACRSAIKSGEKLSEKEMKELVELWKGLE 400

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKM 443
                     +  +  H + I+EK+
Sbjct: 401 NPHVCPHGRPI-YYRLHIKDIYEKL 424



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  +I+SG K+   EM  L+   +   N   C HGRP + +L + DI +  GR
Sbjct: 372 IACRSAIKSGEKLSEKEMKELVELWKGLENPHVCPHGRPIYYRLHIKDIYEKLGR 426



 Score = 38.1 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
           +E+  A +        Q++   I++Q  D L   DQH   ER  +EK++    + +I  +
Sbjct: 316 LEQEIAPYETEFRILGQLNDTVILAQRGDYLYFFDQHLISERANYEKLKGKPEADQIACR 375

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLH 481
           + +      L E E   ++E  + L 
Sbjct: 376 SAIKSGE-KLSEKEMKELVELWKGLE 400


>gi|3914082|sp|P70754|MUTL_AQUPY RecName: Full=DNA mismatch repair protein mutL
 gi|1575784|gb|AAB09595.1| DNA mismatch repair protein [Aquifex pyrophilus]
          Length = 426

 Score =  263 bits (671), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 165/321 (51%), Gaps = 20/321 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M ++ L  ++  +IAAGE+I+ P   +KELIENSLDA+++R+E  +  GGK   ++ DNG
Sbjct: 1   MFVKILPPEVRRKIAAGEVIDAPVDVVKELIENSLDAKATRIEIEVVKGGKRLIRVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E+I   V    TSKI    D  N+ T+GFRGEAL SI +VS   L SR  Q   G
Sbjct: 61  IGIHPEDIEKVVLSGATSKIEKETDLLNVETYGFRGEALYSISSVSKFRLRSRFYQEKEG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +I + G  + SVR V M  GT VEV DLFF +PAR  FL+ E  E   IT++++  AI 
Sbjct: 121 REIEVEGGTLKSVRRVGMEVGTEVEVYDLFFNLPARKKFLRKEDTERRKITELVKEYAIT 180

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            P+V F   +       +          + +   I E F +   E + +   I ++ +  
Sbjct: 181 NPQVDFHLFSEGKETLNLK--------KKDLKGRIEEIFESIFEEESSEREGIKVRAFIS 232

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                     ++Y+F+N R V +K +   ++  +      G   +VVL ++I P  VD N
Sbjct: 233 RN----QKRGKYYLFVNSRPVYNKNLKEYLKKTF------GYKTIVVLFIDIPPFLVDFN 282

Query: 299 VHPAKSYIRFRNPTIIRNFII 319
           VHP K  ++F     I   I 
Sbjct: 283 VHPKKKEVKFLKERKIYELIR 303



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +AC  S+++G K+ + ++  L++E +K  N   C HGRP + KL L ++ +  GR
Sbjct: 370 LACRISVKAGEKLTNEKIKELIKEWKKLENPHVCPHGRPIYYKLPLKEVYEKLGR 424


>gi|288817735|ref|YP_003432082.1| DNA mismatch repair protein [Hydrogenobacter thermophilus TK-6]
 gi|288787134|dbj|BAI68881.1| DNA mismatch repair protein [Hydrogenobacter thermophilus TK-6]
 gi|308751334|gb|ADO44817.1| DNA mismatch repair protein MutL [Hydrogenobacter thermophilus
           TK-6]
          Length = 425

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 111/321 (34%), Positives = 172/321 (53%), Gaps = 19/321 (5%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L E++I++I+AGE+IE P+  +KEL+EN+LDA SSR++  +  GGK +  + DNG G+  
Sbjct: 6   LPEEVISKISAGEVIESPADCVKELVENALDASSSRIDVEMLKGGKRYICVRDNGTGIHR 65

Query: 66  EEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           E++   VQR  TSKI D  D  +I ++GFRGEAL +I  VS + + SR  Q+  G ++ +
Sbjct: 66  EDVHKVVQRWTTSKIKDMSDLMSISSYGFRGEALYAISTVSKMIIKSRFFQDEIGIKMEV 125

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            G K+ + + + M  GT VEV DLF+ +P RL FLK E  E N I  +I+  A++   V 
Sbjct: 126 EGGKVINKQEIGMPVGTCVEVYDLFYNLPVRLKFLKKEDTERNKIIKLIKEYALSNWNVH 185

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
           FT  +       +       +  ERI  + G  F   ++E N  +          + T  
Sbjct: 186 FTLHSNGRKVLDLY---PCEDKKERIEALFGCKFEEKSIEKNSIN--------ISLYTSL 234

Query: 244 RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAK 303
             +  + Y+F+N R V +K +L  IR         G   + V  +++ P  VDVNVHP K
Sbjct: 235 ESSRGEIYLFVNSRPVHNKNLLEYIRKVV------GYKKICVCYIDLPPYMVDVNVHPKK 288

Query: 304 SYIRFRNPTIIRNFIIQSIQK 324
             +R     II+  I +  ++
Sbjct: 289 REVRIYKENIIKEMIKELFRR 309



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
            +C  +I++G+ +   E   L++      N   C HGRP + +L L DI K
Sbjct: 369 RSCAFAIKAGKAISKEEAKELVKAWMSLENREVCPHGRPMYYRLYLGDIYK 419


>gi|255017940|ref|ZP_05290066.1| DNA mismatch repair protein [Listeria monocytogenes FSL F2-515]
          Length = 222

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 6/222 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5   IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++  A  RH TSKI +  D   +HT GFRGEALPSI +VSHL + +       G  
Sbjct: 65  IEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLAMETST-GETKGTS 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I++ G KI   +      GT +EV  LFF  PARL +LKS   E   ITD++ R+A+A+P
Sbjct: 124 ISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHP 183

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV 222
            +SF FS        +   + NG+  + I+ + G      ++
Sbjct: 184 DISFRFSHNGKP---LLQTNGNGDLRQVIAAIYGISIAKKSI 222


>gi|190407796|gb|EDV11061.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|256274239|gb|EEU09147.1| Mlh3p [Saccharomyces cerevisiae JAY291]
 gi|323331172|gb|EGA72590.1| Mlh3p [Saccharomyces cerevisiae AWRI796]
          Length = 715

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/711 (16%), Positives = 238/711 (33%), Gaps = 134/711 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL   +  ++ +       + A++E+++NS+DA ++ ++ +I     SF  + D+G G
Sbjct: 5   IRKLDSNVSERLKSQACTVSLASAVREIVQNSVDAHATTIDVMIDLPNLSF-AVYDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T  ++ +   ++ TSKI   +D   + T+G+RG+AL SI  VS+L + S+    N+   
Sbjct: 64  LTRSDLNILATQNYTSKIRKMNDLVTMKTYGYRGDALYSISNVSNLFVCSKKKDYNSAWM 123

Query: 121 IAISGEKISSVRPVAMN--------------PGTIVEVRDLFFTIPARLNFLK--SEQVE 164
                + +       +                GT+V V D+ + +P R   LK       
Sbjct: 124 RKFPSKSVMLSENTILPIDPFWKICAWSRTKSGTVVIVEDMLYNLPVRRRILKEEPPFKT 183

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF----------QSTNGNFPERISQVIG 214
            N I   + ++ + +P +S         R                + +    + +  V G
Sbjct: 184 FNTIKADMLQILVMHPMISLNVQYTDKLRINTEVLFRSKNITEGLTKHQQMSQVLRNVFG 243

Query: 215 EDFINNAVELNE-KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---- 269
                + ++    K NE  ++G            +  +++INGR   D      +     
Sbjct: 244 AIIPPDMLKKVSLKFNEYQIEGIISKMPV--RLKDLQFIYINGRRYADSAFQGYVDSLFQ 301

Query: 270 -----TAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                      +       P   +PV +L +       D+   PAK  ++  +   I   
Sbjct: 302 AQDFGEKGMSLLKTKSVGKPYRSHPVFILDVRCPQTIDDLLQDPAKKIVKPSHIRTIEPL 361

Query: 318 IIQSIQKAI--------------------------------------------------N 327
           I+++I+  +                                                  N
Sbjct: 362 IVKTIRSFLTFQGYLTPDKSDSSFEIVNCSQKTATLPDSRIQISKRNQVLNSKMKIARIN 421

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                      +   S+ + +      +    + L N               D +     
Sbjct: 422 SYIGKPVVNGCRINNSTINYEKIKNIRIDGQKSRLRNKLSSRPYDSGFTEDYDSIGKTIT 481

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +S     + + E  +         I            LV+VDQHA  ER+  E++    
Sbjct: 482 DFSISRSVLAKYEVINQVDKKFI-LIRCLDQSIHNCPLLVLVDQHACDERIRLEELFYSL 540

Query: 448 NSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREI 500
            +  +T       L    I++   E  L   +  +  + GI  E          + I+ +
Sbjct: 541 LTEVVTGTFVARDLKDCCIEVDRTEADLFKHYQSEFKKWGIGYETIEGTMETSLLEIKTL 600

Query: 501 PAILSK--------------------KNIPQLLRDI--------IDEIIDSSTTYTLQDR 532
           P +L+                     K+  +L  D+        +D++     +  +   
Sbjct: 601 PEMLTSKYNGDKDYLKMVLLQHAHDLKDFKKLPMDLSHFENYTSVDKLYWWKYSSCVPTV 660

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  ++  G ++   E   L+ ++ +  N  +C HGRP+ + +
Sbjct: 661 FHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPI 711


>gi|71991825|ref|NP_499796.2| MLH (MutL Homolog) family member (mlh-1) [Caenorhabditis elegans]
 gi|33668505|emb|CAB07283.2| C. elegans protein T28A8.7, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 758

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/427 (25%), Positives = 189/427 (44%), Gaps = 20/427 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L + ++N++AAGE++ RP  AIKEL+ENSLDA ++ +   +  GG    Q++DNG G
Sbjct: 4   IQRLPQDVVNRMAAGEVLARPCNAIKELVENSLDAGATEIMVNMQNGGLKLLQVSDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+  +  +R  TSK+   +D  ++ T+GFRGEAL S+  V+ + ++S+        Q
Sbjct: 64  IEREDFALVCERFATSKLQKFEDLMHMKTYGFRGEALASLSHVAKVNIVSKRADAKCAYQ 123

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                 K++   +P A   GT +   DLF+ +P R N + +   E  ++ D + R AI  
Sbjct: 124 ANFLDGKMTADTKPAAGKNGTCITATDLFYNLPTRRNKMTTHGEEAKMVNDTLLRFAIHR 183

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQGYT 237
           P VSF     ++  ++      +GNF + +  ++G D  +  +   LN    + T  G+ 
Sbjct: 184 PDVSFALRQNQAGDFRTK---GDGNFRDVVCNLLGRDVADTILPLSLNSTRLKFTFTGHI 240

Query: 238 GIPTFN---------RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
             P  +         + + + F VFINGR+V+   +   I           +     L L
Sbjct: 241 SKPIASATAAIAQNRKTSRSFFSVFINGRSVRCDILKHPIDEVLGARQLHAQ--FCALHL 298

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           +ID  ++DVNVHP K+ + F     I   I    +K I +     +  + K        +
Sbjct: 299 QIDETRIDVNVHPTKNSVIFLEKEEIIEEIRAYFEKVIGEIFGFEALDVEKPEEEQPDIE 358

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
           N     + +   S+     K   +    S+     SD           +  E    +   
Sbjct: 359 NLVMIPMSQSLKSI-EAIRKPDTKPEFKSSPSAWKSDKKRVDYMEVRTDAKERKIDEFVT 417

Query: 409 ACAQIHQ 415
               +  
Sbjct: 418 RGGAVGP 424


>gi|323302694|gb|EGA56500.1| Mlh3p [Saccharomyces cerevisiae FostersB]
          Length = 715

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 118/711 (16%), Positives = 239/711 (33%), Gaps = 134/711 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL   +  ++ +       + A++E+++NS+DA ++ ++ +I     SF  + D+G G
Sbjct: 5   IRKLDSNVSERLKSQACTVSLASAVREIVQNSVDAHATTIDVMIDLPNLSF-AVYDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T  ++ +   ++ TSKI   +D   + T+G+RG+AL SI  VS+L + S+    N+   
Sbjct: 64  LTRSDLNILATQNYTSKIRKMNDLVTMKTYGYRGDALYSISNVSNLFVCSKKKDYNSAWM 123

Query: 121 IAISGEKISSVRPVAMN--------------PGTIVEVRDLFFTIPARLNFLKSEQVE-- 164
                + +       +                GT+V V D+ + +P R   LK E     
Sbjct: 124 RKFPSKSVMLSENTILPIDPFWKICAWSRTKSGTVVIVEDMLYNLPVRRRILKEEPPFKA 183

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF----------QSTNGNFPERISQVIG 214
            N I   + ++ + +P +S         R                + +    + +  V G
Sbjct: 184 FNTIKXDMLQILVMHPMISLNVQYTDKLRINTEVLFRSKNITEGLTKHQQMSQVLRNVFG 243

Query: 215 EDFINNAVELNE-KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---- 269
                + ++    K NE  ++G            +  +++INGR   D      +     
Sbjct: 244 AIIPPDMLKKVSLKFNEYQIEGIISKMPV--RLKDLQFIYINGRRYADSAFQGYVDSLFQ 301

Query: 270 -----TAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                      +       P   +PV +L +       D+   PAK  ++  +   I   
Sbjct: 302 AQDFGEKGMSLLKTKSVGKPYRSHPVFILDVRCPQTIDDLLQDPAKKIVKPSHIRTIEPL 361

Query: 318 IIQSIQKAI--------------------------------------------------N 327
           I+++I+  +                                                  N
Sbjct: 362 IVKTIRSFLTFQGYLTPDKSDSSFEIVNCSQKTATLPDSRIQISKRNQVLNSKMKIARIN 421

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                      +   S+ + +      +    + L N               D +     
Sbjct: 422 SYIGKPVVNGCRINNSTINYEKIKNIRIDGQKSRLRNKLSSRPYDSGFTEDYDSIGKTIT 481

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +S     + + E  +         I            LV+VDQHA  ER+  E++    
Sbjct: 482 DFSISRSVLXKYEVINQVDKKFI-LIRCLDQSIHNCPLLVLVDQHACDERIRLEELFCSL 540

Query: 448 NSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREI 500
            +  +T       L    I++   E  L   +  +  + GI  E          + I+ +
Sbjct: 541 LTEVVTGTFVARDLKDCCIEVDRTEADLFKHYQSEFKKWGIGYETIEGTMETSLLEIKTL 600

Query: 501 PAILSK--------------------KNIPQLLRDI--------IDEIIDSSTTYTLQDR 532
           P +L+                     K+  +L  D+        +D++     +  +   
Sbjct: 601 PEMLTSKYNGDKDYLKMVLLQHAHDLKDFKKLPMDLSHFENYTSVDKLYWWKYSSCVPTV 660

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  ++  G ++   E   L+ ++ +  N  +C HGRP+ + +
Sbjct: 661 FHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPI 711


>gi|207340650|gb|EDZ68936.1| YPL164Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 715

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/711 (16%), Positives = 238/711 (33%), Gaps = 134/711 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL   +  ++ +       + A++E+++NS+DA ++ ++ +I     SF  + D+G G
Sbjct: 5   IRKLDSNVSERLKSQACTVSLASAVREIVQNSVDAHATTIDVMIDLPNLSF-AVYDDGIG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +T  ++ +   ++ TSKI   +D   + T+G+RG+AL SI  VS+L + S+    N+   
Sbjct: 64  LTRSDLNILATQNYTSKIRKMNDLVTMKTYGYRGDALYSISNVSNLFVCSKKKDYNSAWM 123

Query: 121 IAISGEKISSVRPVAMN--------------PGTIVEVRDLFFTIPARLNFLK--SEQVE 164
                + +       +                GT+V V D+ + +P R   LK       
Sbjct: 124 RKFPSKSVMLSENTILPIDPFWKICAWSRTKSGTVVIVEDMLYNLPVRRRILKEEPPFKT 183

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF----------QSTNGNFPERISQVIG 214
            N I   + ++ + +P +S         R                + +    + +  V G
Sbjct: 184 FNTIKADMLQILVMHPMISLNVQYTDKLRINTEVLFRSKNITEGLTKHQQMSQVLRNVFG 243

Query: 215 EDFINNAVELNE-KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---- 269
                + ++    K NE  ++G            +  +++INGR   D      +     
Sbjct: 244 AIIPPDMLKKVSLKFNEYQIEGIISKMPV--RLKDLQFIYINGRRYADSAFQGYVDSLFQ 301

Query: 270 -----TAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                      +       P   +PV +L +       D+   PAK  ++  +   I   
Sbjct: 302 AQDFGEKGMSLLKTKSMGKPYRSHPVFILDVRCPQTIDDLLQDPAKKIVKPSHIRTIEPL 361

Query: 318 IIQSIQKAI--------------------------------------------------N 327
           I+++I+  +                                                  N
Sbjct: 362 IVKTIRSFLTFQGYLTPDKSDSSFEIVNCSQKTATLPDSRIQISKRNQVLNSKMKIARIN 421

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                      +   S+ + +      +    + L N               D +     
Sbjct: 422 SYIGKPVVNGCRINNSTINYEKIKNIRIDGQKSRLRNKLSSRPYDSGFTEDYDSIGKTIT 481

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
            +S     + + E  +         I            LV+VDQHA  ER+  E++    
Sbjct: 482 DFSISRSVLAKYEVINQVDKKFI-LIRCLDQSIHNCPLLVLVDQHACDERIRLEELFYSL 540

Query: 448 NSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREI 500
            +  +T       L    I++   E  L   +  +  + GI  E          + I+ +
Sbjct: 541 LTEVVTGTFVARDLKDCCIEVDRTEADLFKHYQSEFKKWGIGYETIEGTMETSLLEIKTL 600

Query: 501 PAILSK--------------------KNIPQLLRDI--------IDEIIDSSTTYTLQDR 532
           P +L+                     K+  +L  D+        +D++     +  +   
Sbjct: 601 PEMLTSKYNGDKDYLKMVLLQHAHDLKDFKKLPMDLSHFENYTSVDKLYWWKYSSCVPTV 660

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  ++  G ++   E   L+ ++ +  N  +C HGRP+ + +
Sbjct: 661 FHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPI 711


>gi|297809903|ref|XP_002872835.1| hypothetical protein ARALYDRAFT_490319 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318672|gb|EFH49094.1| hypothetical protein ARALYDRAFT_490319 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 923

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 176/367 (47%), Gaps = 12/367 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR ++  +I++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG G
Sbjct: 17  IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++     +   +H TSK+ D  D  N+ T+GFRGEAL S+ A+ +LT+ +R         
Sbjct: 77  ISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       +++ + +A   GT V VR LF  +P R   F ++ + E   +  ++   A+ 
Sbjct: 137 LTFDHSGLLTAEKKIARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYALI 196

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN-EKSNEITLQG 235
              V F  S    K+ +  +      G+  + I  V G +   +   ++   S +  ++G
Sbjct: 197 AKGVRFVCSNTSGKNPKSIVLNTQGRGSLKDNIITVFGMNTFTSLQPVSICISEDCRVEG 256

Query: 236 YTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +   P     R  A++ Y FINGR V+   +   +   Y +T    +YPV +L   +   
Sbjct: 257 FLSKPGQGTGRNLADRQYFFINGRPVEMPKVSKLVNELYKDT-SSRKYPVAILDFVVPGG 315

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
             D+NV P K  + F +   +   + + + +  +      S ++++   +S   D A  +
Sbjct: 316 ACDLNVTPDKRKVFFSDENSVIGSLREGLNEIYSSSN--ASYIVNRFEENSEQPDKAGVS 373

Query: 354 HLPKYAT 360
              + + 
Sbjct: 374 SFQEKSN 380



 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 20/198 (10%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            ++      Q +  +II++    L IVDQHAA E+  FE +     ST +  Q LL P  
Sbjct: 705 DFRRMQVLGQFNLGFIIAKLERDLFIVDQHAADEKFNFEHL---ARSTVLNQQPLLQPLN 761

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERF----GPNAIAIREIPAILSKKNIPQLLRDIID 518
           ++L   E   ++ H + +   G   E            +R +P   +     + L+D+I 
Sbjct: 762 LELSPEEEVTVLMHMDIIRENGFLLEENPSAPAGKHFRLRAVPYSKNITFGVEDLKDLIS 821

Query: 519 EIIDS-------------STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
            + D+              T      R+  +LA+ AC  S+  G  ++  EM +++  + 
Sbjct: 822 TLGDNHGECSGVSSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLA 881

Query: 566 KNPNSSQCNHGRPTFIKL 583
              +   C HGRPT   L
Sbjct: 882 DLESPWNCPHGRPTMRHL 899


>gi|19112991|ref|NP_596199.1| MutL family protein Mlh1 (predicted) [Schizosaccharomyces pombe
           972h-]
 gi|48474996|sp|Q9P7W6|MLH1_SCHPO RecName: Full=Putative MutL protein homolog 1; AltName: Full=DNA
           mismatch repair protein MLH1
 gi|6723918|emb|CAB66448.1| MutL family protein Mlh1 (predicted) [Schizosaccharomyces pombe]
          Length = 684

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 18/413 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L + +IN+IAAGEIIERP  AIKELIENSLDA S+ ++ ++  GG    QITDNG 
Sbjct: 8   KIRPLDQLVINKIAAGEIIERPENAIKELIENSLDAGSTSIDVLLKDGGLKLLQITDNGS 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++P   QR  TSKI   +D  ++ TFGFRGEAL SI  V+ +T++++   +    
Sbjct: 68  GIQYDDLPYLCQRFSTSKIDNFNDLQHLQTFGFRGEALASISHVAKVTVVTKLSSDIHAW 127

Query: 120 QIAI--------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +           S     + +P A   GT++   DLF+ + +R + LK+   E   I  +
Sbjct: 128 KAFYVDGALAPISPGMSPAPQPCAGKQGTVITAEDLFYNVRSRKSALKNGSEEFRRIMIL 187

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV-----ELNE 226
           +++ AI   +VSF    +      ++  S      ++I  + G    ++       E   
Sbjct: 188 VQKYAIHNDQVSFNCKKVGDTVASLSLSSRLSK-ADKIRHIYGPRVASHLRDFSLGEGQS 246

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
                +  G+     F    +N   +FIN R V+   +   +   YA+ +  G    V L
Sbjct: 247 SIVGFSANGFISNADFQDKKSNLI-LFINNRLVESVELRHALEETYAKYLHKGASYFVYL 305

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            L + P Q+DVNVHP+K  + F     I   I   + + + +     S  L + MI S  
Sbjct: 306 SLNMSPEQLDVNVHPSKRIVHFLYDQEIATSICDKLGEILERTDTERSYPL-QAMIPSIS 364

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
                ++   K   +  N   +   +E  + +         + +  ++ + E 
Sbjct: 365 NTKNAESSSQKAVRTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIEK 417


>gi|93006321|ref|YP_580758.1| ATP-binding region, ATPase-like [Psychrobacter cryohalolentis K5]
 gi|92393999|gb|ABE75274.1| DNA mismatch repair protein MutL [Psychrobacter cryohalolentis K5]
          Length = 580

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 117/520 (22%), Positives = 219/520 (42%), Gaps = 42/520 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+KLS  +INQ+AAGE++ RP+  +KEL+EN++DA ++ +E  I  GG    ++ DNG 
Sbjct: 9   RIKKLSPLLINQLAAGEVVTRPAAVVKELLENAIDAHATDIEVRITQGGMGMIEVIDNGV 68

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ MAV RH TSK++D      I T GFRGEAL +  AVS LTL S    +  G 
Sbjct: 69  GIHPDDMVMAVTRHATSKVADVAHLHGITTLGFRGEALAATAAVSRLTLTSSHNDSGIGR 128

Query: 120 QIAISGE--KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++G       + PV  + GT + V+DL+F +PAR   LKS   E + I  ++R +A+
Sbjct: 129 QLQVAGILGDTPKLIPVVHHRGTTITVKDLYFNVPARRGNLKSIATEFSHIETIVREVAL 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPER-----ISQVIGEDFINNAVELNEKSNEIT 232
           A   V+ T       R  ++  + N    +      + Q  G      A+E+    + +T
Sbjct: 189 ARADVALTLFHDNKKRLSLSVNTINKVTEKYLPLSRLEQATGLALAEQAIEIAVDLSSLT 248

Query: 233 LQGYTG-----IPTFNRGNANQFY--------------------VFINGRTVQDKFILST 267
            Q  +         +                             +++NGR V++  I + 
Sbjct: 249 QQFGSSSATNANGEYADNVRTMQAASIGGWLWASYDANHSLPKLIYVNGRLVKEALISNQ 308

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           +R         G      L  E+  + ++VNVHP+K  I+      I   +  +I+  + 
Sbjct: 309 LRQMVQSVQLAG--MGYALYFELPTQWLNVNVHPSKQRIKISPLNNIMAHLSHAIRAKLR 366

Query: 328 KKGISTSSVLSKKMIS---SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
               +      ++  +   S  +       +  Y  + T +Q+    ++    + +    
Sbjct: 367 GLNTAKIVRSKERAPNDNISTRKSFNALDAIASYTNNATASQQVQAPKQPYQLSENESLF 426

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD-QHAAHERLIFEKM 443
           +       ++PVE+S        +    +     +  +  GLV     ++  ++ +   +
Sbjct: 427 ESIKDLHIDEPVEDSRHAVNSYPVNTPPLPVCLQVIDSVTGLVASSVIYSNDDKALPWLL 486

Query: 444 RQDFNSTKITSQTLLTPEIIDL--LEGECALIMEHDEDLH 481
                   + S       +  L       + + +  ++L+
Sbjct: 487 FYYQGQCALISAERWQSRLKVLFESSVFSSTMYDKAKELN 526


>gi|18411951|ref|NP_567236.1| PMS1 (POSTMEIOTIC SEGREGATION 1); ATP binding / mismatched DNA
           binding [Arabidopsis thaliana]
 gi|15617225|gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana]
 gi|332656775|gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana]
          Length = 923

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 174/367 (47%), Gaps = 12/367 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR ++  +I++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG G
Sbjct: 17  IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++     +   +H TSK+ D  D  N+ T+GFRGEAL S+ A+ +LT+ +R         
Sbjct: 77  ISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       +++ +  A   GT V VR LF  +P R   F ++ + E   +  ++   A+ 
Sbjct: 137 LTFDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYALI 196

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN-EKSNEITLQG 235
              V F  S    K+ +  +      G+  + I  V G     +   ++   S +  ++G
Sbjct: 197 AKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSEDCRVEG 256

Query: 236 YTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +   P     R  A++ Y FINGR V    +   +   Y +T    +YPV +L   +   
Sbjct: 257 FLSKPGQGTGRNLADRQYFFINGRPVDMPKVSKLVNELYKDT-SSRKYPVTILDFIVPGG 315

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
             D+NV P K  + F + T +   + + + +  +      S ++++   +S   D A  +
Sbjct: 316 ACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSN--ASYIVNRFEENSEQPDKAGVS 373

Query: 354 HLPKYAT 360
              K + 
Sbjct: 374 SFQKKSN 380



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 20/198 (10%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            ++      Q +  +II++    L IVDQHAA E+  FE +     ST +  Q LL P  
Sbjct: 701 DFRRMQVLGQFNLGFIIAKLERDLFIVDQHAADEKFNFEHL---ARSTVLNQQPLLQPLN 757

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIPAILSKKNIPQLLRDIID 518
           ++L   E   ++ H + +   G   E            +R IP   +     + L+D+I 
Sbjct: 758 LELSPEEEVTVLMHMDIIRENGFLLEENPSAPPGKHFRLRAIPYSKNITFGVEDLKDLIS 817

Query: 519 EIIDS-------------STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
            + D+              T      R+  +LA+ AC  S+  G  ++  EM +++  + 
Sbjct: 818 TLGDNHGECSVASSYKTSKTDSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLA 877

Query: 566 KNPNSSQCNHGRPTFIKL 583
              +   C HGRPT   L
Sbjct: 878 DLESPWNCPHGRPTMRHL 895


>gi|167825658|ref|ZP_02457129.1| DNA mismatch repair protein [Burkholderia pseudomallei 9]
          Length = 245

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 9/223 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN+LDA +  +  ++  GG     ITD+G G
Sbjct: 30  IQPLPDQLISQIAAGEVVERPASVVKELVENALDAGAGTLRILLDEGGVKRISITDDGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + ++E+P+A+ RH TSKI    +   + T GFRGEAL SI +V+ + + SR        +
Sbjct: 90  IPADELPLALMRHATSKIRSLAELEAVATLGFRGEALASIASVAEMFITSRTEDAAHATR 149

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I     +   V P A   GT +EVR+L+F+ PAR  FLKSEQ E     ++IRR A+A P
Sbjct: 150 I---DAQTGVVGPAAGTRGTTIEVRELYFSTPARRKFLKSEQTEFGHCLEMIRRAALARP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE 223
            V+ +           N          R+++++G+ F    + 
Sbjct: 207 DVAISVLHNGRAVEHWNASEPAA----RVAKILGDGFATAHLP 245


>gi|260812020|ref|XP_002600719.1| hypothetical protein BRAFLDRAFT_83461 [Branchiostoma floridae]
 gi|229286008|gb|EEN56731.1| hypothetical protein BRAFLDRAFT_83461 [Branchiostoma floridae]
          Length = 1072

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 173/380 (45%), Gaps = 23/380 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L       +++  +I      +KEL+ENSLDA+++ V+  +   G     ++DNG G+
Sbjct: 12  QALPAATARLLSSTLVITSVFSVVKELVENSLDAQATSVDVKLESFGFDRIVVSDNGSGI 71

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  +     QRH TSK+S   D  ++ T+GFRGEAL S+ AV+ +T+ ++   ++     
Sbjct: 72  SRADAEFMAQRHYTSKLSHQADLDSLETYGFRGEALGSLCAVADVTVTTKTAADDFSMIY 131

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  + KI++ +P  +  GT + V +LF  +P R  +    K  + E   + D++  + +
Sbjct: 132 TLDRQGKITNSKPAHLGQGTTITVTNLFKNVPVRRQYYSAPKRRKEELKRVEDIMMALGV 191

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN--NAVELNEKSNEITLQG 235
             P V F+    K   ++ N      +    +  V+G   +     VE      ++ +QG
Sbjct: 192 IKPDVRFSLIHNKCTVWQKNKYP---DHRTALRTVLGTGTMALLQGVEHRNVEPQVDVQG 248

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG---RYPVVVLL 287
           +   P        R   ++ +VF N R VQ K +   +R  Y  +   G   R+P++ L 
Sbjct: 249 FLPKPGADPQAVTRATTDRSFVFFNERPVQMKGVEKLVRQYYHGSTSDGASSRHPIIFLS 308

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           +++ P ++D NV P K+ +   N   I + I    ++ +     S+      K  S   +
Sbjct: 309 IKVPPAEIDPNVEPNKTKVLLHNNDSILSVI----EEMLQTVYSSSDDANHSKATSEEAR 364

Query: 348 DNAPKTHLPKYATSLTNTQE 367
           D   K+     +    NT E
Sbjct: 365 DTTHKSTSSSDSNKQQNTLE 384


>gi|256072195|ref|XP_002572422.1| DNA mismatch repair protein MLH1 [Schistosoma mansoni]
 gi|238657580|emb|CAZ28653.1| DNA mismatch repair protein MLH1, putative [Schistosoma mansoni]
          Length = 918

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 123/534 (23%), Positives = 211/534 (39%), Gaps = 56/534 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L +++IN+IAAGE+I+RP  AIKEL+ENS+DA S+ ++  +  GG    Q+ DNG 
Sbjct: 28  TIKRLPKEVINRIAAGEVIQRPVNAIKELLENSIDAGSTMIKITVKDGGLKLIQVQDNGC 87

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   ++P+  +R  TSK+ +  D S I TFGFRGEAL S+  V+ +T+ +R    N   
Sbjct: 88  GIHQSDLPILCERFTTSKLKEFSDLSKISTFGFRGEALSSLSHVALVTVTTRTANQNCAF 147

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +    +G   S   P A NPGT +   +LF+  P R + LK+ + E + +T+V+ + AI 
Sbjct: 148 KVKYRAGVAESKPVPCAGNPGTTIVAENLFYNAPIRKSALKNGREELSKVTEVVAQYAIH 207

Query: 179 Y-PKVSFTFSTI----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE------- 226
           Y  +  F   +     KS+  +    S   +  + I  VIG     N +           
Sbjct: 208 YAQQCGFHLHSESATGKSSIEQDLRTSAGWSRMDAIRAVIGSSIEQNLISFTSSQCSSSE 267

Query: 227 ------KSNEITLQGYTGIPT---FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                 +   +  +G    P         + +  +FIN R V    I   +  AY+  I 
Sbjct: 268 STRLAIERYGLRYEGLLTAPNQVSSGCSPSLKLNLFINNRLVSCTPIKRIVECAYSSVIS 327

Query: 278 LG--------------------------------RYPVVVLLLEIDPRQVDVNVHPAKSY 305
            G                                    V L +++    +DVNVHP K+ 
Sbjct: 328 RGLSSNSTDHQAVLTNKKFKISTNSNIMYKSSTFNSLYVYLNIQLPVHTLDVNVHPTKAE 387

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
           + F +   I N +  ++++A+       + V +        ++          +T   N 
Sbjct: 388 VNFLHEDEIVNGLQDAVEQALLSSAQIQTFVRNCLPTPITFKNPKELNTHNDRSTDRPNE 447

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
           + ++ L+E +L       S+    +     +E       +  I            +  + 
Sbjct: 448 KVRIDLREQQLERFLSPQSNYMNNNMACSKLERLHNNSLKKSIGEMSPDIEVDSDEADEI 507

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           L              E  R    +T   S      +  D  E E     ++   
Sbjct: 508 LKSNLLQENSSWNNSELDRSKIKATTEQSHLFYDQQEKDFDENELTTTAQNHSQ 561


>gi|255564118|ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
 gi|223537618|gb|EEF39241.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
          Length = 924

 Score =  260 bits (665), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/405 (24%), Positives = 188/405 (46%), Gaps = 15/405 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +++ ++++I AG++I   S A+KEL+ENSLDA ++ +E  +   G+  FQ+ DNG G
Sbjct: 9   IKPINKGVVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDYGEDSFQVIDNGCG 68

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++     +   +H TSK++D  D  ++ TFGFRGEAL S+ A+  LT+ +R    +    
Sbjct: 69  VSPNNFKVLALKHHTSKLADFPDLQSLTTFGFRGEALSSLCALGELTVETRTKNESVATH 128

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           ++      +++ +  A   GT V V+ LF  +P R   F ++ + E   +  ++   A+ 
Sbjct: 129 LSYDRSGLLTAEKKTARQIGTTVTVKKLFSNLPVRSKEFSRNIRKEYGKLISLLNAYALI 188

Query: 179 YPKVS--FTFSTIKSNRYKMNFQSTNGNFPERISQVIGED-FINNAVELNEKSNEITLQG 235
              V    T +T ++ +  +       +  + I  V G   F          S+   + G
Sbjct: 189 AKGVRLLCTNTTGRNAKIVVLKTQGTDSLKDNIITVFGMSTFSCLEPVSICISDCCKVDG 248

Query: 236 YTGIP--TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +   P     R   ++ Y F+NGR V    +   +   Y       +YP+ ++   +  R
Sbjct: 249 FLSKPGQGSGRNLGDRQYYFVNGRPVDMPKVTKLVNELYRGANSR-QYPIAIMNFIVPTR 307

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
             DVNV P K  I F + T I + + + +Q   +    S S    ++ I +     +   
Sbjct: 308 ACDVNVTPDKRKIFFSDETSILHALREGLQNIYSPSNASYSVNKFEERIKAASNSQSCSP 367

Query: 354 H-----LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
           H     L K  ++++N  E++ ++E+    ++LL +        N
Sbjct: 368 HEKSLVLSKQLSAVSNDAEEILVEEHTSDGSNLLQTVKMKSHPSN 412



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 21/209 (10%)

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              +       Q +  +II +    L IVDQHAA E+  FE +     ST +  Q LL  
Sbjct: 711 KQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHL---CQSTILNQQPLLRS 767

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIPAILSKKNIPQLLRDI 516
             ++L   E  +   + E + + G   E        +   ++ +P   +     + ++D+
Sbjct: 768 LRLELSPEEEVVASMNMELIRKNGFALEEDPHAPPGHRFKLKAVPFSKNITFGVEDVKDL 827

Query: 517 IDEIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           I  + DS    ++               R+  +LA+ AC  S+  G  +   EM ++L  
Sbjct: 828 ISTLADSQGDCSIIGSYKMDKSDSVCPSRVRTMLASRACRSSVMIGDPLGRNEMQKILEH 887

Query: 564 MEKNPNSSQCNHGRPTFIKL-KLSDIEKL 591
           +    +   C HGRPT   L  ++ I K 
Sbjct: 888 LADLNSPWNCPHGRPTMRHLVDMTSIYKR 916


>gi|71065479|ref|YP_264206.1| DNA mismatch repair protein MutL [Psychrobacter arcticus 273-4]
 gi|71038464|gb|AAZ18772.1| DNA mismatch repair protein MutL [Psychrobacter arcticus 273-4]
          Length = 583

 Score =  259 bits (663), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 117/496 (23%), Positives = 210/496 (42%), Gaps = 42/496 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+KLS  +INQ+AAGE++ RPS  +KEL+EN++DA ++ +E  I  GG    ++ DNG 
Sbjct: 9   RIKKLSPLLINQLAAGEVVTRPSAVVKELLENAIDAYATNIEVHITQGGMGMIEVIDNGV 68

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ MAV RH TSK++D      I T GFRGEAL +  AVS LTL+S    +  G 
Sbjct: 69  GIHPDDMVMAVTRHATSKVADVAHLHGITTLGFRGEALAATAAVSRLTLISSHDDSGIGR 128

Query: 120 QIAISG--EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           Q+ ++G  + +  + PV  + GT + V+DL+F +PAR   LKS   E   I  + R +A+
Sbjct: 129 QLQVAGILDDMPKLIPVVHHRGTTITVKDLYFNVPARRGNLKSIATEFGHIETMFREVAL 188

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPER-----ISQVIGEDFINNAVELNEKSNEIT 232
           A   V+ T       R  ++  + + +         + Q  G      A+E+    + +T
Sbjct: 189 ARADVALTLFHDNKKRLSLSVNTISNDNENYLPLSRLEQATGLALTEQAIEVAVDLSSLT 248

Query: 233 LQGYTGI--------------------------PTFNRGNANQFYVFINGRTVQDKFILS 266
                                            P+ +  +     +++NGR V++  I +
Sbjct: 249 QHPSISSHSTHVTNGYTDNAGAMQSARISGWLWPSCDTNHHLPKLIYVNGRLVKEALISN 308

Query: 267 TIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
            +R         G      L  E+  + ++VNVHP+K  I+      I   +  +++  +
Sbjct: 309 QLRQMAQSAQLAG--MGYALYFELPTQWLNVNVHPSKQRIKISPLNNIMAHLSHAVRAKL 366

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN---DLLP 383
                +          +S              A+S TN      +Q  + +     + L 
Sbjct: 367 RTLNPAKIFSNKNATPNSNVSTKQSFNTSDPIASSTTNAIRTQQIQAPKQTYQLSANELL 426

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI--VDQHAAHERLIFE 441
             +      N+ +E+S        +  + +     I  +  GL+      H++ ++ +  
Sbjct: 427 FQNIKDCHINESIEDSSHAANSDPVETSPLPVCLEIINSVAGLIAESSAVHSSDDKALPW 486

Query: 442 KMRQDFNSTKITSQTL 457
            +        + S   
Sbjct: 487 LLFYHQGQCVLISAER 502


>gi|297679831|ref|XP_002817725.1| PREDICTED: LOW QUALITY PROTEIN: mismatch repair endonuclease
           PMS2-like, partial [Pongo abelii]
          Length = 943

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 96/416 (23%), Positives = 171/416 (41%), Gaps = 21/416 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 213 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 272

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 273 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 332

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 333 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 392

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEI----- 231
              +  + +       +     T G  +  E I  V G+  +    +             
Sbjct: 393 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQVMFFWKCRYPWGAFGLCLK 452

Query: 232 TLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            + G+    T   G +  ++ + FIN R      +   +   Y       +YP V L + 
Sbjct: 453 CISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVSRLVNEVYHVY-NRQQYPFVALNIS 511

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTSSVLSKKMISSFHQ 347
           +D   VD+NV P K  I  +   ++   +  S+    +     ++ S      +  +  +
Sbjct: 512 VDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDVNKLNVSQQPLLDIEGNLIK 571

Query: 348 DNAPKTHLP-----KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
            +A     P      ++ SL+  +EK  +  +RL     L              E 
Sbjct: 572 MHAADLEKPVVEKQDHSPSLSTQEEKRDVSISRLREAFSLRHATENKPHSPKTPEP 627



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV----LSKKMISSFHQD 348
             VD + +P  +  +FR      N    + ++   ++ +S S +    ++ + +S+   D
Sbjct: 732 SDVDCHSNPEDTRCKFRVLPQPTNLASPNTKRFKKEEILSNSDIRQKLVNTQNVSASQVD 791

Query: 349 NAPKTHLPKYA-----TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE--- 400
            A K +    +     +SL    ++L  +  +  ++              +   E E   
Sbjct: 792 VAVKINKKVVSLDFSMSSLAKRIKQLHHEAQQSESDQNYRKFRAKICPGENQAAEDELRK 851

Query: 401 ---ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
               T +       Q +  +II++  + + IVDQHA  E+  FE ++Q    T +  Q L
Sbjct: 852 EISKTMFAEMEIIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRL 908

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           + P+ ++L     A+++E+ E   + G   
Sbjct: 909 IAPQTLNLTAVNEAVLIENLEIFRKNGFDF 938


>gi|156406466|ref|XP_001641066.1| predicted protein [Nematostella vectensis]
 gi|156228203|gb|EDO49003.1| predicted protein [Nematostella vectensis]
          Length = 346

 Score =  259 bits (663), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 175/341 (51%), Gaps = 18/341 (5%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
            L +  +++IA+ ++I   S A+KEL+EN+LDA ++ +E  +   G    ++ DNG G+ 
Sbjct: 6   LLPQDTVHRIASSQVITSVSSAVKELLENALDAGANSIEVKLEEYGLEKIEVRDNGTGIP 65

Query: 65  SEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++     QRH TSKI+   +  ++ ++GFRGEAL S+ AVS++++M++      G    
Sbjct: 66  QDDAQFMAQRHYTSKITTFHNLDSLASYGFRGEALCSLCAVSNVSVMTKTNNEEVGMCYT 125

Query: 123 ISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF---LKSEQVETNLITDVIRRMAIA 178
           +    +IS+ +P+ +  GT+V   +LF  +P R  F    K  + E   + ++I    + 
Sbjct: 126 LDQHGRISATKPLPLTTGTVVTACNLFKNLPVRKQFSRGNKKCKDELKKVEELIMAFGLI 185

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGY 236
           +P V  T    KS  ++ N      +  + ++ +IG + +++  E+  K ++  + ++G+
Sbjct: 186 HPSVRLTLRHNKSIIWQKN---KCEDLKKALTGIIGANAMSSMEEIIVKDDQTGLRIEGF 242

Query: 237 TGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL--GRYPVVVLLLE 289
              P       +R   ++ +V++N R V  K I   +R  Y +  P    R+PV  L +E
Sbjct: 243 VPKPGSDPNVTSRSMGDRSFVYVNKRPVVLKEIAQVVREFYLKIHPTISNRHPVAFLSIE 302

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           + P  VDVN+ P KS +      II + +  S+++      
Sbjct: 303 VPPCAVDVNLEPNKSRVLLTEKDIIIDLLRNSLEELYVDHN 343


>gi|254583920|ref|XP_002497528.1| ZYRO0F07634p [Zygosaccharomyces rouxii]
 gi|238940421|emb|CAR28595.1| ZYRO0F07634p [Zygosaccharomyces rouxii]
          Length = 744

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/716 (17%), Positives = 257/716 (35%), Gaps = 139/716 (19%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL   +   + +  +    + A++E+++NS+DA ++ ++ ++     SF  + DNG+G
Sbjct: 5   ISKLDPNVSRVLRSQIVAVSLTSAVREVVQNSVDAGATALQIMVDPFQMSFM-VKDNGYG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  +++     +H TSKI    D   ++TFGFRGEAL  I  ++ +TL+S+    N+   
Sbjct: 64  MDPQDLDRVGCQHFTSKIRSLHDLQTLNTFGFRGEALFCIANIAQVTLVSKRSDCNSSWI 123

Query: 121 ----IAISGEKISSVRPVAMN---------PGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
                     K                    GT V VR++ + +P R   L ++ +   L
Sbjct: 124 RDIPYESRLFKDPKGDASYHFSLQPISKEESGTTVLVRNILYNVPVRRRILANDPLFKTL 183

Query: 168 IT--DVIRRMAIAYPKVSFTFSTIK---------SNRYKMNFQSTNGNFPERISQVIGED 216
            T  + + ++ I  P +S   S +          S+       +      +  S + G  
Sbjct: 184 HTLREDLFQVLILRPDISLKVSYLDQLGKLKELISSTNITKDMNHFMKLSQSFSNIFGSV 243

Query: 217 FINNAV-ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA-- 273
              +   +++ K    ++ G               ++++NGR   ++     I   +   
Sbjct: 244 TPIDMFTKVSVKFKGCSVTGLISKCPV--RPKEFQFIYLNGRKYTNQAFQKVINGIFQTA 301

Query: 274 --------ETI------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
                   +T+      P   YP+++L +       D+   PAK  +   +  ++   I+
Sbjct: 302 GFGAGGLSDTLIKTVGKPFNNYPLIILDVRCPQVAEDLMQDPAKDVVSSSHAHLLHPLIL 361

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
           + I+  ++ +G   +S  +   ++  ++   P T  P  +T   N+      +  RL T+
Sbjct: 362 RVIKSFLSHQGYMANSSAAVNDLTENNKTI-PNTSSPLPSTKFANSVLNSNARMARLKTD 420

Query: 380 DLLPSDDPTYSEDN--------DPVEESEATHYQLGIACAQIHQNYIISQTTDGL----- 426
             +    P   + +        D ++ +            + +   + +  ++GL     
Sbjct: 421 KKVDKTSPVTKQIDSGKIKPILDKLKRALPQDKLDIEQIYEKNDCCVPTPYSNGLGHIER 480

Query: 427 ------------------------------------------VIVDQHAAHERLIFEKMR 444
                                                     +IVDQHA  ER+  E   
Sbjct: 481 LEGMDFKLDRSQLIKAEVIRQVDKKFILLKIPPNENVAHSMLIIVDQHACDERINLENYL 540

Query: 445 QDFNSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER----FGPNAIAI 497
           +DF    +        ++   ID+   E  L   ++++  +  I  E          + +
Sbjct: 541 KDFLYQVLEGTLMTHPVSDCAIDIDITEGYLFRHYEKEFKKWAISCEIKILNLETCFLMV 600

Query: 498 REIPAILS---KKNIPQLLRDIIDEIIDSSTT---------------------------Y 527
             +P +L+   + +   L   ++  + D   +                           +
Sbjct: 601 SSLPDVLTIKVQGDKQFLKNALLQMVHDFKNSEKIPITNMCDRHVFKMSINKFEWWKYLH 660

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            L      I  + AC  SI  G  + + E + L++++ +     QC HGRP+ I L
Sbjct: 661 CLPTMFREIFNSRACRSSIMFGDLLSTPECSLLIKQLAQCHTPFQCAHGRPSVIPL 716


>gi|67616266|ref|XP_667471.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658612|gb|EAL37242.1| hypothetical protein Chro.50122 [Cryptosporidium hominis]
          Length = 444

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 175/364 (48%), Gaps = 28/364 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKLS+++I++IAAGE++  PS A+KEL+ENSLDA S  +   +  GG    QI+D+G 
Sbjct: 3   RIRKLSDEVISRIAAGEVVVSPSHALKELLENSLDAGSRNIVLQLRKGGIQSLQISDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   + PM  +R  TSK++   D  ++ TFGFRGEAL SI  VS L++ S+   ++   
Sbjct: 63  GIDKNDFPMLCERFATSKLTSMKDIQSLKTFGFRGEALSSISFVSQLSITSKTEMSDCAY 122

Query: 120 QIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           + + S  K+ S          GTIV++ DLF+ +P+R   + S   E     D++++  I
Sbjct: 123 RASFSDGKMISELEEVALAKRGTIVQINDLFYNMPSRQRAMGSASDEYARCLDLVQKYCI 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--------------- 222
            +P+VSF       N   +            I  + G + +   +               
Sbjct: 183 EFPEVSFNVRKFGQNTNDLRTNGGVKTRKNVIGLLYGSNVVKELIQFTVSRDSERPRDSN 242

Query: 223 -----ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                EL+ K  + + + Y     +N    N   +FINGR V++  I   I TAY  T  
Sbjct: 243 KEKSNELSLKIPDFSAELYISGLGYNPKQ-NTLIIFINGRLVKNNAIKQAIETAYQYTKS 301

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
                   + + I    +D N+HP K+ +   +  +I + I + +  ++     S + VL
Sbjct: 302 N---YWAFVSVRIPSETIDPNIHPTKNLVYISHEALISDAIQRKVMCSLQASNYSRNMVL 358

Query: 338 SKKM 341
            +K 
Sbjct: 359 ERKP 362


>gi|291413733|ref|XP_002723121.1| PREDICTED: PMS2 postmeiotic segregation increased 2 [Oryctolagus
           cuniculus]
          Length = 867

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR +  K ++QI +G+++   S A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 39  IRPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLRLKDYGVDLIEVSDNGCG 98

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          +H TSKI D  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 99  VEEGNFEGLTLKHHTSKIQDFADLTQVATFGFRGEALSSLCALSDVTISTCHSSAKVGTR 158

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF+ +P R   F ++ + E   +  V+    I 
Sbjct: 159 LVFDHSGKILQKTPCPRPRGTTVSVQQLFYPLPVRHKEFQRNIKKEYAKMVQVLHAYCII 218

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              +  + +    +  R  +   S + +  E I  V G+  + + +   +          
Sbjct: 219 STGIRVSCTNQLGQGKRQPVVCTSGSSSIKENIGCVFGQKQLQSLIPFVQLPPSDSVCEE 278

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 279 YGLSCSEALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVSRLVNEVYHMY- 337

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              ++P VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 338 NRHQHPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAILKTSLIGMFDS 389



 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 107/259 (41%), Gaps = 10/259 (3%)

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           G ++   ++ K+       +   + L +    L + +E    ++N       +   D   
Sbjct: 605 GPASQLDVAVKVPKRVVPLDFSMSSLAERVRRLLHREEPGGGEQNYRRFRAKICPGDNQA 664

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           +E  +  +E     +       Q +  +II++  + L IVDQHA  E+  FE +++    
Sbjct: 665 AE-EELRKEISKAMFAEMEIIGQFNLGFIITKLHEDLFIVDQHATDEKYNFEMLQRH--- 720

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAIL 504
           T +  Q L+ P+ ++L     A+++E+ E   + G              A  +  +P   
Sbjct: 721 TVLQGQRLIAPQALNLTAVNEAILLENLEIFRKNGFDFVIDEAAPVTQRAKLV-SLPTSK 779

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
           +    PQ + ++I  + DS        R+  + A+ AC  S+  G  +   EM +L+  M
Sbjct: 780 NWTFGPQDIDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNPSEMKQLVTHM 839

Query: 565 EKNPNSSQCNHGRPTFIKL 583
            +  +   C HGRPT   +
Sbjct: 840 GEMDHPWNCPHGRPTLRHI 858


>gi|301784411|ref|XP_002927619.1| PREDICTED: mismatch repair endonuclease PMS2-like [Ailuropoda
           melanoleuca]
          Length = 870

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 176/423 (41%), Gaps = 29/423 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATTIDLRLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI D  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQDFADLTQVETFGFRGEALSSLCALSDVTISTCHTSAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      +I    P     GT V V+ LF+T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LVFDHNGRIVQRSPHPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              +  + S    +  R  +   S + +  E I+ V G+  + + +   +          
Sbjct: 195 SAGIRVSCSNQVGQGKRQPVVCTSGSSSIKENIASVFGQKQLQSLIPFAQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                         + G+         R +A++ + FINGR      +   +   Y    
Sbjct: 255 YGLSPADAVQTLFHISGFISHCAHGVGRSSADRQFFFINGRPCDPAKVSRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ S
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLVGMFDSDVNKLNVS 373

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                 M     + ++ ++  P+     +    +   +E R  T   L           +
Sbjct: 374 QQPLLGMEGHLIKTHSAESDKPQPERRDSPASLRTGGEEKRAVTISRLRETFSLRHTMEN 433

Query: 395 PVE 397
             +
Sbjct: 434 RPQ 436



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 9/191 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   T +       Q +  +II++    + IVDQHA  E+  FE ++Q         Q L
Sbjct: 675 EISKTMFAEMEIIGQFNLGFIITKLNADIFIVDQHATDEKYNFEMLQQHTALQG---QRL 731

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           + P+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 732 IAPQTLNLTAVNEAVLIENLEIFRKNGFDFIIDEGAPVTERAKLI-SLPTSKNWTFGPQD 790

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 791 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKKLVTHMGEMDHPWN 850

Query: 573 CNHGRPTFIKL 583
           C HGRPT   +
Sbjct: 851 CPHGRPTMRHM 861


>gi|309358798|emb|CAP33641.2| CBR-MLH-1 protein [Caenorhabditis briggsae AF16]
          Length = 761

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 97/315 (30%), Positives = 162/315 (51%), Gaps = 21/315 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L E ++N++AAGE++ RP  AIKEL+ENSLDA ++ ++ ++  GG    Q++DNG G
Sbjct: 4   IQRLPEDVVNRMAAGEVLARPCNAIKELVENSLDAGATEIKVMMQNGGLKTLQVSDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+  +  +R  TSK+   +D  ++ T+GFRGEAL S+  V+ + ++S+        Q
Sbjct: 64  IEREDFELVCERFATSKLQKFEDLMHMKTYGFRGEALASLSHVAKVNIVSKRADAKCAYQ 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
               G+ ++  +P A   GT +   DLF+ +P R N + +   E  ++ D + R AI  P
Sbjct: 124 ---DGKLLAPTKPAAGKNGTCITATDLFYNLPTRRNKMTTHGEEAKMVYDTLLRFAIHRP 180

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYTG 238
            VSF     +S+ ++      +GNF + +  ++G D  +  + ++  SN       G   
Sbjct: 181 DVSFALHQNQSSDFRTK---GDGNFRDVVCNLLGRDVADTVIPISLDSNRLKFKFTGKIS 237

Query: 239 IPTFNRGNANQFYV---------FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            P  +  + N             FINGR+V+   +   I           +     L LE
Sbjct: 238 KPIASATSKNAQNRKTSRSFFSVFINGRSVRCDILKHPIDDVLQNRSLCVQ--FCALHLE 295

Query: 290 IDPRQVDVNVHPAKS 304
           ID  ++DVNVHP KS
Sbjct: 296 IDETRIDVNVHPTKS 310


>gi|224045611|ref|XP_002197386.1| PREDICTED: mutL homolog 1, colon cancer, nonpolyposis type 2 (E.
           coli) [Taeniopygia guttata]
          Length = 717

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 170/385 (44%), Gaps = 15/385 (3%)

Query: 34  SLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFG 91
           SLDA+S+ ++ V+  GG  F Q+ DNG G+  E++ +  +R  TSK+   +D ++I T+G
Sbjct: 29  SLDAKSTSIQVVVKEGGLKFIQVQDNGCGIRKEDLDIVCERFTTSKLQKFEDLASISTYG 88

Query: 92  FRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFT 150
           FRGEAL SI  V+H+T+ ++        +   S  KI    +P A N GT + V DLF+ 
Sbjct: 89  FRGEALASISHVAHVTVTTKTADAKCAFRATYSDGKIKAPPKPCAGNQGTQITVEDLFYN 148

Query: 151 IPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERIS 210
           +  R   LK+   E   I +V+ R AI    +SF+          +   S      + I 
Sbjct: 149 VNTRRKALKNPNEEYAKILEVVSRYAIHNSGISFSVKKQGDTVSDVRTLSNASTV-DNIR 207

Query: 211 QVIGEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI 268
            + G       +E+  +       ++GY     ++        +FIN R V+   +   I
Sbjct: 208 AIFGNAVSRELIEVGCEDANLAFKMKGYITNANYSVKKCIFL-LFINHRLVESAALRKAI 266

Query: 269 RTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
            T YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q ++  +  
Sbjct: 267 ETVYAAYLPKSTHPFLYLSLEIAPQNVDVNVHPTKHEVHFLHEDSILERVQQHVESKLLG 326

Query: 329 KGIS--------TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
              S        +  V + +M+ +  ++      L     SL++   ++    N      
Sbjct: 327 SNSSRMYFTQGNSDKVYAHQMVRTDSREQKMDAFLQPVNNSLSSGPTEVTTGVNARPPEG 386

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQ 405
                D    E +D VE ++     
Sbjct: 387 ADRPQDAEMEEVSDLVEMADVQENP 411


>gi|169642755|gb|AAI60858.1| Pms2 protein [Rattus norvegicus]
          Length = 853

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 180/424 (42%), Gaps = 30/424 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KELIENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATSIDLRLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +     + G +
Sbjct: 75  VEEENFEGLALKHHTSKIREFADLTQVETFGFRGEALSSLCALSDVTISTCHVSASIGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           + +    KI    P     GT V V++LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 135 LVLDHNGKIIQKTPCPRPKGTTVSVQNLFYTLPVRHKEFQRNIKKEYAKMVQVLQAYCII 194

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE------------- 223
              +  + +    +  R  +   S +    E I  V G+  + + V              
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQLQSLVPFVQLPPSDSVCEE 254

Query: 224 -----LNEKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     +   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YCLSACGTPQSPFRISGFISQCTHGAGRSSTDRQFFFINQRPCDPAKVSRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     +S +
Sbjct: 314 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLMGMFDSDANKLSVN 373

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLT-NTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                 +  +  + +  +    + + SL    +EK     +RL     L     T S   
Sbjct: 374 QQPLLNVEGNLVKLHTAEVGEQENSPSLRITAEEKRVASVSRLREAYSLHRTTETKSWGP 433

Query: 394 DPVE 397
           +  E
Sbjct: 434 ETPE 437



 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 9/191 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 658 EIRKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 714

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 715 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFIIDEDAPVTERAKLI-SLPTSKNWTFGPQD 773

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 774 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSASEMKKLISHMGEMDHPWN 833

Query: 573 CNHGRPTFIKL 583
           C HGRPT   +
Sbjct: 834 CPHGRPTMRHI 844


>gi|148687083|gb|EDL19030.1| postmeiotic segregation increased 2 (S. cerevisiae), isoform CRA_b
           [Mus musculus]
          Length = 794

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/404 (22%), Positives = 173/404 (42%), Gaps = 29/404 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KELIENS+DA ++ ++  +   G    +++DNG G
Sbjct: 6   IKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +     + G +
Sbjct: 66  VEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASVGTR 125

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI+   P     GT V V+ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 126 LVFDHNGKITQKTPYPRPKGTTVSVQHLFYTLPVRYKEFQRNIKKEYAKMVQVLQAYCII 185

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  + +    +  R  +   S +    E I  V G+  + + +   +          
Sbjct: 186 SAGVRVSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQLQSLIPFVQLPPSDAVCEE 245

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 246 YGLSTSRTPQNLFYVSGFISQCTHGAGRSATDRQFFFINQRPCDPAKVSKLVNEVYHMY- 304

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ +
Sbjct: 305 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDANKLNVN 364

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                 +  +  + +  +   P       +   K    E R+++
Sbjct: 365 QQPLLDVEGNLVKLHTAELEKPVPGKQDNSPSLKSTADEKRVAS 408



 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 7/227 (3%)

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           L+ T  K F  E R S  ++        S     V+ +   + ++ +    +       +
Sbjct: 559 LSPTNAKRFKTEERPSNVNISQRLPGPQSTSAAEVDVAIKMNKRIVLLEFSLSSLAKRMK 618

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQ-DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
               L   ++H    R    K+   +  + +   +  + P+ ++L     A+++E+ E  
Sbjct: 619 QLQHLKAQNKHELSYRKFRAKICPGENQAAEDELRKEIRPQTLNLTAVNEAVLIENLEIF 678

Query: 481 HRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
            + G              A  I  +P   +    PQ + ++I  + DS        R+  
Sbjct: 679 RKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQDIDELIFMLSDSPGVMCRPSRVRQ 737

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
           + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   
Sbjct: 738 MFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWNCPHGRPTMRH 784


>gi|148687084|gb|EDL19031.1| postmeiotic segregation increased 2 (S. cerevisiae), isoform CRA_c
           [Mus musculus]
          Length = 850

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/404 (22%), Positives = 173/404 (42%), Gaps = 29/404 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KELIENS+DA ++ ++  +   G    +++DNG G
Sbjct: 6   IKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDNGCG 65

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +     + G +
Sbjct: 66  VEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASVGTR 125

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI+   P     GT V V+ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 126 LVFDHNGKITQKTPYPRPKGTTVSVQHLFYTLPVRYKEFQRNIKKEYAKMVQVLQAYCII 185

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  + +    +  R  +   S +    E I  V G+  + + +   +          
Sbjct: 186 SAGVRVSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQLQSLIPFVQLPPSDAVCEE 245

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 246 YGLSTSRTPQNLFYVSGFISQCTHGAGRSATDRQFFFINQRPCDPAKVSKLVNEVYHMY- 304

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ +
Sbjct: 305 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDANKLNVN 364

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                 +  +  + +  +   P       +   K    E R+++
Sbjct: 365 QQPLLDVEGNLVKLHTAELEKPVPGKQDNSPSLKSTADEKRVAS 408



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 655 EISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 711

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 712 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQD 770

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 771 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWN 830

Query: 573 CNHGRPTFIK 582
           C HGRPT   
Sbjct: 831 CPHGRPTMRH 840


>gi|121583910|ref|NP_032912.2| mismatch repair endonuclease PMS2 [Mus musculus]
 gi|148687085|gb|EDL19032.1| postmeiotic segregation increased 2 (S. cerevisiae), isoform CRA_d
           [Mus musculus]
 gi|223461565|gb|AAI41288.1| Postmeiotic segregation increased 2 (S. cerevisiae) [Mus musculus]
          Length = 859

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/404 (22%), Positives = 173/404 (42%), Gaps = 29/404 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KELIENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +     + G +
Sbjct: 75  VEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI+   P     GT V V+ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 135 LVFDHNGKITQKTPYPRPKGTTVSVQHLFYTLPVRYKEFQRNIKKEYAKMVQVLQAYCII 194

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  + +    +  R  +   S +    E I  V G+  + + +   +          
Sbjct: 195 SAGVRVSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQLQSLIPFVQLPPSDAVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSTSRTPQNLFYVSGFISQCTHGAGRSATDRQFFFINQRPCDPAKVSKLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ +
Sbjct: 314 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDANKLNVN 373

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                 +  +  + +  +   P       +   K    E R+++
Sbjct: 374 QQPLLDVEGNLVKLHTAELEKPVPGKQDNSPSLKSTADEKRVAS 417



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 664 EISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 720

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 721 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQD 779

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 780 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWN 839

Query: 573 CNHGRPTFIK 582
           C HGRPT   
Sbjct: 840 CPHGRPTMRH 849


>gi|311250873|ref|XP_003124331.1| PREDICTED: mismatch repair endonuclease PMS2-like [Sus scrofa]
          Length = 852

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/404 (23%), Positives = 167/404 (41%), Gaps = 29/404 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLRLKDYGMDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF+T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LVFDHNGKILQKSPYPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKEFAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  T +    +  R  +   S   +  E I  V G+  + + +   +          
Sbjct: 195 SSGVRVTCTNQVGQGKRQPVVSTSGGASIKENIGSVFGQKQLQSLISFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 FGLSCSDALHNLFCISGFISRCTHGVGRSSTDRQFFFINRRPCDPAKVSRLVNEVYH-LY 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +      S  
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIDMFDNDVNKISVR 373

Query: 337 LSK--KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                 +  +  + +  +T  P           K   QE R  T
Sbjct: 374 QQSLLDVEGNLIKRHPAETERPGPEQQEHPAPLKAAGQEKRAVT 417



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 9/224 (4%)

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
            QE+    E                + +++  +E     +       Q +  +II++   
Sbjct: 624 RQEQQREGEQNYRKFRAKICPGENQAAEDELRKEISKEMFAEMEIIGQFNLGFIITKLNA 683

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++E+ +   + G
Sbjct: 684 DIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIVPQTLNLTAVNEAVLIENLDIFRKNG 740

Query: 485 IKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
                         A  I  +P   +    PQ + ++I  + DS        R+  + A+
Sbjct: 741 FDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQDIDELIFMLSDSPGVMCRPSRVRQMFAS 799

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            AC  S+  G  + + EM RL+  M +  +   C HGRPT   +
Sbjct: 800 RACRKSVMIGTALNTSEMRRLVSHMGEMDHPWNCPHGRPTMRHI 843


>gi|327285948|ref|XP_003227693.1| PREDICTED: mismatch repair endonuclease PMS2-like [Anolis
           carolinensis]
          Length = 842

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/393 (23%), Positives = 163/393 (41%), Gaps = 28/393 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  + ++QI +G+++     A+KEL+ENS+DA ++ VE  +   G    +++DNG G
Sbjct: 10  IKPIDRRSVHQICSGQVVLNLCTAVKELVENSIDAGATTVEVKLKDYGADLIEVSDNGCG 69

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI D  D  N+ TFGFRGEAL S+ A+S +++ +       G +
Sbjct: 70  VEEENFAGLTLKHHTSKIQDFSDLINVETFGFRGEALSSLCALSDVSIFTCHTSAKVGTR 129

Query: 121 IAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI+   P     GT V V+ LF T+P R   F ++ + E   +  V++   I 
Sbjct: 130 LVFDHGGKITLKVPCPRQQGTTVSVQQLFHTLPVRHKEFQRNIKKEYAKMVQVLQAYCIV 189

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNE---------- 226
              V  T +       K     TNGN    E I  + G+  + + +   +          
Sbjct: 190 STGVRITCTNQVGQGKKQPVVCTNGNSTVKENIGAIFGQKQVQSLIPFVQLPPSDAICEE 249

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                    +   T+ G+        G +  ++ + FIN R      +   +   Y    
Sbjct: 250 YGLNPADIPTRLYTITGFVSRCDHGIGRSTTDRQFFFINQRPCDPTKVSKLVNEVYHMY- 308

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-NKKGISTSS 335
              +YP VVL +  D   VD+NV P K  I  +   ++   +  S+     N       +
Sbjct: 309 NRHQYPFVVLNICADSESVDINVTPDKRQIFLQEEKLLLAIVKTSMMGMFGNDVNKIVLN 368

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
                +  +F          P   T  +++  +
Sbjct: 369 QKLIDVEGNFKTTVRNGAESPPLETRDSSSPNR 401



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 7/195 (3%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E     +       Q +  +I+++    L IVDQHA+ E+  FE++++    T +  Q L
Sbjct: 647 EISKEMFAKMDIIGQFNLGFIVAKLNSDLFIVDQHASDEKYNFEQLQEH---TVLQGQRL 703

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQLL 513
           ++P+ ++L     ++++E+ E   + G              + +  +P   +    PQ +
Sbjct: 704 ISPQNLNLTAINESVLIENLEIFRKNGFDFVINEDAPVTQRVQLISLPMSKNWTFGPQDI 763

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   C
Sbjct: 764 DELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMVGTALNAKEMKKLITHMGEIEHPWNC 823

Query: 574 NHGRPTFIKLKLSDI 588
            HGRPT   L   D+
Sbjct: 824 PHGRPTIRHLANLDL 838


>gi|331218508|ref|XP_003321931.1| hypothetical protein PGTG_03468 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300921|gb|EFP77512.1| hypothetical protein PGTG_03468 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 748

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 111/407 (27%), Positives = 174/407 (42%), Gaps = 60/407 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  L E ++N+IAAGEII RP+ AIKEL+EN +DA ++ V+  +  GG    QI DNG 
Sbjct: 50  PIVALEESVVNRIAAGEIIIRPANAIKELLENCIDAGATSVKITVKDGGAKMLQIQDNGS 109

Query: 62  GM-----------------------TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEA 96
           G+                          ++ +  +R  TSKI   DD S++ T+GFRGEA
Sbjct: 110 GIRASPSFLNRSIQISGWTLLIHIQQKADLGILCERFTTSKIRKFDDLSSLCTYGFRGEA 169

Query: 97  LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS--------VRPVAMNPGTIVEVRDLF 148
           L SI  ++HLT+ ++      G +   S  K++          +P A N GT++ V D+F
Sbjct: 170 LASISHIAHLTIATKTRSEGVGWKAQYSDGKLAPLKAGGPSDPQPCAGNDGTMITVEDMF 229

Query: 149 FTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPER 208
           + +P R   L+S   E   I DV+ R AI    V+ +     S    +N  ++     E 
Sbjct: 230 YNVPQRRKALQSPSDEYRKILDVVTRYAIHNQGVAISCKKTGSASPDVNTTAS-ATILET 288

Query: 209 ISQVIGE--DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           I ++  E        +E  +K     ++GY     +N   A    +FIN           
Sbjct: 289 IGRLFSETLKKELMHLEFTDKKLGFKVEGYFSTANYNAKKAITM-IFINS---------- 337

Query: 267 TIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
                         +P + + LEI P +VD NVHP K  + F +   I   I   +   +
Sbjct: 338 -------------NFPFIYISLEIAPDRVDPNVHPNKKEVHFLDQDEIVERICDKLNVFL 384

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
                S S  +   +  +   D    +     + S T+   K+  Q+
Sbjct: 385 AGSNSSRSYNVQTLLPMATPDDKGINSSQTNTSQSKTSKSAKVLPQK 431


>gi|74226946|dbj|BAE27115.1| unnamed protein product [Mus musculus]
          Length = 859

 Score =  256 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 173/404 (42%), Gaps = 29/404 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KELIENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +     + G +
Sbjct: 75  VEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI+   P     GT V V+ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 135 LVFDHNGKITQKTPYPRPKGTTVSVQHLFYTLPVRYKEFQRNIKKEYAKMVQVLQAYCII 194

Query: 179 YPKVSFTFSTI-KSNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNE---------- 226
              V  + +      + +    ++  +   E I  V G+  + + +   +          
Sbjct: 195 SAGVRVSCTNQLGQGKRQPXVCTSASSGMKENIGSVFGQKQLQSLIPFVQLPPSDAVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSTSRTPQNLFYVSGFISQCTHGAGRSATDRQFFFINQRPCDPAKVSKLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ +
Sbjct: 314 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDANKLNVN 373

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                 +  +  + +  +   P       +   K    E R+++
Sbjct: 374 QQPLLDVEGNLVKLHTAELEKPVPGKQDNSPSLKSTADEKRVAS 417



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 664 EISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 720

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 721 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQD 779

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 780 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWN 839

Query: 573 CNHGRPTFIK 582
           C HGRPT   
Sbjct: 840 CPHGRPTMRH 849


>gi|117556979|gb|ABK35675.1| putative mismatch repair protein [Tetrahymena thermophila]
          Length = 756

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 108/438 (24%), Positives = 190/438 (43%), Gaps = 21/438 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+KL +++I++IAAGE+++RPS A+KELIEN LDA SS +   +  GG     + DNG 
Sbjct: 13  QIKKLPQELIDKIAAGEVVQRPSAAVKELIENCLDAGSSEISVGLVQGGLKQLIVEDNGS 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++ P+  +R  TSKI++  D  ++ +FGFRGEAL SI  VS+L + SR P ++ G 
Sbjct: 73  GIHKDDFPLLCERFATSKINEFNDLQSLVSFGFRGEALASISFVSNLKITSRKPNSDLGY 132

Query: 120 QIAISGEKI--SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           + +     +       V    GT V+V+DLFF   AR   L +   E   +  +I + A+
Sbjct: 133 KASFKNGVMLGEEPEAVNCTEGTTVDVQDLFFNYDARRKSL-NVNEEKKRVLKLIGQFAM 191

Query: 178 AYPKVSFTFSTIKSNRYKMNFQST------NGNFPERISQVIGEDFINNAVELNEKSNEI 231
            + K+ F F +    ++  +               ++I+++  + F +   E      ++
Sbjct: 192 HHAKLRFKFKSDNQIQFSSHSVLGSTELQRREQIMQQITKIADKSFTS--CESESTEYQV 249

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP-----LGRYPVVVL 286
             +G        +       +FIN R V+ + I   +  +Y           G Y    L
Sbjct: 250 KFKGTFSNIGATKKYKE-ITLFINNRLVECESIKKAVERSYQSCYQSIHEEEGGY-FCYL 307

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS-SVLSKKMISSF 345
            LE++P+ +D NVHP K  ++F     I   I   I + +   G+    S    +  SSF
Sbjct: 308 SLEMNPKNLDPNVHPTKKEVKFLFEYEIAKEIESWIFENLKNCGVIKQLSANISQRTSSF 367

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
              N  ++   +      +   K      + +    +   D   +         +  +  
Sbjct: 368 ETSNVKRSSSSQLYFGSQSNLSKQNSDYYQPTKQIRVDPRDQKITRFFSVESSEDGNNNS 427

Query: 406 LGIACAQIHQNYIISQTT 423
                  I+      +  
Sbjct: 428 NQKNYQSINYIEEQKEEH 445


>gi|296192534|ref|XP_002806632.1| PREDICTED: LOW QUALITY PROTEIN: mismatch repair endonuclease
           PMS2-like [Callithrix jacchus]
          Length = 1052

 Score =  256 bits (654), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 99/440 (22%), Positives = 177/440 (40%), Gaps = 31/440 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 205 IRPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 264

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI D  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 265 VEEENFEGLTLKHYTSKIQDFADLTQVETFGFRGEALSSLCALSDVTISTCHASVKVGTR 324

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF+T+P R   F ++ + E   +  V+    I 
Sbjct: 325 LVFDHSGKIIQKTPYPRPKGTTVSVQQLFYTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 384

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 385 SSGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 444

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+        G +  ++ + FIN R      +   +   Y    
Sbjct: 445 YGLSCSDALHNLFYISGFISQCAHGVGRSSTDRQFFFINRRPCDPAKVSRLVNEVYHMY- 503

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI----NKKGIS 332
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+        NK  +S
Sbjct: 504 NRNQYPFVVLNISVDAECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDVNKLNVS 563

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
              +L              +  LP+   +  +++ +   ++  +S      S   T    
Sbjct: 564 QQPLLDIGGNLMKVHAADLEKPLPEQQDNSPSSRTREEKRDVSISRLREAFSLHHTAESK 623

Query: 393 NDPVEESEATHYQLGIACAQ 412
           +  ++  E      G     
Sbjct: 624 SHSLKTPEPRRSSPGQKRGM 643



 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 116/293 (39%), Gaps = 17/293 (5%)

Query: 296  DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
              N    K      N   IR  ++ +      +   ++   ++ K+       +   + L
Sbjct: 763  SPNTKRFKKEEILSNSD-IRQKLVNT------QNVSASQVDVAVKIDKKVVPLDFSMSSL 815

Query: 356  PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
             K      +  ++   ++N       +   +   +E ++  +E   + +       Q + 
Sbjct: 816  TKRMKQFHHKAKQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKSMFAEMEIIGQFNL 874

Query: 416  NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L      +++E
Sbjct: 875  GFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIVPQTLNLTAVNEIILIE 931

Query: 476  HDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
            + E   + G              A  I  +P   +    PQ + ++I  + DS       
Sbjct: 932  NLEIFRKNGFDFVIDESAPVTQKAKLI-SLPTSKNWTFGPQDIDELIFMLSDSPGVMCRP 990

Query: 531  DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  +   EM +L+  M +  +   C HGRPT   +
Sbjct: 991  SRVKQMFASRACRKSVMIGTALNPSEMKKLITHMGEMDHPWNCPHGRPTMRHI 1043


>gi|209875525|ref|XP_002139205.1| DNA mismatch repair protein MutL [Cryptosporidium muris RN66]
 gi|209554811|gb|EEA04856.1| DNA mismatch repair protein MutL, putative [Cryptosporidium muris
           RN66]
          Length = 811

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 193/418 (46%), Gaps = 33/418 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I++L +++I +IAAGE++ RPS A+KELIENSLDA SS +   +  GG    QI DNG+
Sbjct: 3   RIKRLPDEVIARIAAGEVVVRPSHAVKELIENSLDAGSSSISLQLKHGGLKGLQIIDNGY 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   + P+  +R  TSK+    D  ++ TFGFRGEAL SI  VS L++ S    ++   
Sbjct: 63  GIDKADFPLLCERFTTSKLRLLSDIDSLKTFGFRGEALASISYVSRLSITSMTDSSSCAF 122

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +    KI S          GTI++  DLF+ +PARL  L S   E ++  +++++  I
Sbjct: 123 TASFIDGKIISDITPVAANQRGTIIKFSDLFYNMPARLRSLGSSSEEYSMCLELVQKYCI 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG-NFPERISQVIGEDFINNAVE-----------LN 225
            + KV F+     +    +     +     + I  + G +   + +             +
Sbjct: 183 EFYKVGFSVRKFGNTCLDLRTPGGDNIQREDVIQLLYGRELSKDLIYLNISSNINSHSSD 242

Query: 226 EKSNEITLQGYTGIPTFNRGNANQ--------FYVFINGRTVQDKFILSTIRTAYAETIP 277
            KS E++L         N   +N           +FIN R V    I   I  AY  T  
Sbjct: 243 VKSEELSLHSLIPKYNINLYMSNLNYRPKKSTVIIFINQRLVSSSSIKQAIDMAYQYT-- 300

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
            G    V + +++ P  +D NVHP KS ++  +  +I   I   + KA+     S+S  L
Sbjct: 301 -GTQYWVFISIKVPPETIDPNVHPTKSKVQLTHDVLIAEIIQNRMIKALQ--DTSSSRSL 357

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQE----KLFLQENRLSTNDLLPSDDPTYSE 391
           +   ++SF     P     K     T++Q+    +    E+ + T   + S D T+  
Sbjct: 358 NVNDLNSFSDVKKPDKSSNKPTKVRTDSQQCSIREFTNSESNVKTAYKIYSIDGTFEN 415


>gi|17942778|pdb|1H7U|A Chain A, Hpms2-Atpgs
 gi|17942779|pdb|1H7U|B Chain B, Hpms2-Atpgs
          Length = 365

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365


>gi|17942770|pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
 gi|17942771|pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
          Length = 364

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 150/345 (43%), Gaps = 27/345 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTS 358


>gi|26450625|dbj|BAC42424.1| putative DNA mismatch repair protein PMS1 [Arabidopsis thaliana]
          Length = 733

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/367 (26%), Positives = 174/367 (47%), Gaps = 13/367 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR ++  +I++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG G
Sbjct: 17  IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++     +   +H TSK+ D  D  N+ T+GFRGEAL S+ A+ +LT+ +R         
Sbjct: 77  ISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       +++ +  A   GT V VR LF  +P R   F ++ + E   +  ++   A+ 
Sbjct: 137 LTFDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYALI 196

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN-EKSNEITLQG 235
              V F  S    K+ +  +      G+  + I  V G     +   ++   S +  ++G
Sbjct: 197 AKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSEDCRVEG 256

Query: 236 YTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +   P     R  A++ Y FINGR V    +   +   Y +T    +YPV +L   +   
Sbjct: 257 FLSKPGQGTGRNLADRQYFFINGRPVDMPKV-KLVNELYKDT-SSRKYPVTILDFIVPGG 314

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
             D+NV P K  + F + T +   + + + +  +      S ++++   +S   D A  +
Sbjct: 315 ACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSN--ASYIVNRFEENSEQPDKAGVS 372

Query: 354 HLPKYAT 360
              K + 
Sbjct: 373 SFQKKSN 379


>gi|308490925|ref|XP_003107654.1| CRE-MLH-1 protein [Caenorhabditis remanei]
 gi|308250523|gb|EFO94475.1| CRE-MLH-1 protein [Caenorhabditis remanei]
          Length = 1082

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/614 (21%), Positives = 244/614 (39%), Gaps = 68/614 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L + ++N++AAGE++ RP  AIKEL+ENSLDA ++ +   +  GG    Q++DNG G
Sbjct: 4   IQRLPQDVVNRMAAGEVLARPCNAIKELVENSLDAGATEIMVNMQNGGLKLLQVSDNGKG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  ++  +  +R  TSK+   +D  ++ T+GFRGEAL S+  VS + ++S+        Q
Sbjct: 64  IERDDFDLVCERFATSKLQKFEDLMHMKTYGFRGEALASLSHVSKVNIVSKREDGKCAYQ 123

Query: 121 ----------IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITD 170
                      A  G+ ++  +P A   GT +   DLF+ +P R N + +   E+ ++ D
Sbjct: 124 ANYLGEKQRKSAQDGKMLAPTKPAAGKNGTCITATDLFYNLPTRRNKMTTHGEESKMVHD 183

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
            I R AI  P VSF     +S+ ++      +GNF   +  ++G D  +  + L+ +S  
Sbjct: 184 TILRFAIHRPDVSFALHQNQSSDFRTK---GDGNFRNVVCTLLGRDLADTVLPLSLESTR 240

Query: 231 --ITLQGYTGIPTFNRGNANQFYV---------FINGRTVQDKFILSTIRTAYAETIPLG 279
                 G    P  +  + N             FINGR+V+   +   I           
Sbjct: 241 LKFKFTGNVSKPITSATSKNSQNRKTSRSFFSVFINGRSVRCDILKHPIDEVLQNRSLFC 300

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-KGISTSSVLS 338
           +   V L LEID  ++DVNVHP KS + F     I   I +  +K ++   G      + 
Sbjct: 301 Q--FVALHLEIDETRIDVNVHPTKSSVIFLEKEEIIEEIREYFEKFVSDIFGFEPRGNVK 358

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
            +  + F     P  ++    +     +  +  ++    +     ++           + 
Sbjct: 359 DEEEAEFSFSQVPIINIQSIKSIEAIKKPSVSNEKEFKPSPTSWKTEKKRVDHMEVRTDS 418

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK----------MRQDFN 448
            E    ++     +        + ++ +   D     ER+   +          +    +
Sbjct: 419 KE---RKIDEFVVRCPGQKRPRRDSEDVFRDDVEDVDERIQRNQEFNDEVSMVSVASTVD 475

Query: 449 STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI---PAILS 505
                SQ L   E ++          E  E L +     +     ++++RE+      + 
Sbjct: 476 RRLNESQDLGEDEELECATTHREFQFESLETLRK-----QIVSNASLSLRELIRTSTFVG 530

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI-RSGR----KMQSI----- 555
             +   +L      +   + +  L++    I        SI   G     ++        
Sbjct: 531 SIDPETVLIQFGTSLFQMNFSAVLREFFYQI--------SIFSFGNYGSYRLDDEPPAVI 582

Query: 556 EMNRLLREMEKNPN 569
           EM  L+ E+ K   
Sbjct: 583 EMLELIGELSKTDE 596


>gi|58737033|dbj|BAD89425.1| postmeiotic segregation increased 2 nirs variant 1 [Homo sapiens]
          Length = 572

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365


>gi|66358030|ref|XP_626193.1| MutL family ATpase [Cryptosporidium parvum Iowa II]
 gi|46227026|gb|EAK87976.1| MutL family ATpase [Cryptosporidium parvum Iowa II]
          Length = 817

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/364 (29%), Positives = 177/364 (48%), Gaps = 28/364 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKLS+++I++IAAGE++  PS A+KEL+ENSLDA S  +   +  GG    QI+D+G 
Sbjct: 3   RIRKLSDEVISRIAAGEVVVSPSHALKELLENSLDAGSRNIILQLRKGGIQSLQISDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   + PM  +R  TSK++   D  ++ TFGFRGEAL SI  VS L++ S+   ++   
Sbjct: 63  GIDKNDFPMLCERFATSKLTTMKDIQSLKTFGFRGEALSSISFVSQLSITSKTEMSDCAY 122

Query: 120 QIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           + + S  K+ S      +   GTIV++ DLF+ +P+R   + S   E     D++++  I
Sbjct: 123 RASFSDGKMISELEEVASAKRGTIVQINDLFYNMPSRQRAMGSASDEYARCLDLVQKYCI 182

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--------------- 222
            +P+VSF       N   +            I  + G + +   +               
Sbjct: 183 EFPEVSFNVRKFGQNTNDLRTNGGVKTRKNVIGLLYGSNVVKELIQFTVSRDSERPRDLN 242

Query: 223 -----ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                EL+ K  + + + Y     +N    N   +FINGR V++  I   I TAY  T  
Sbjct: 243 KEKSNELSLKIPDFSAELYISGLGYNPKQ-NTLIIFINGRLVKNNAIKQAIETAYQYTKS 301

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
                   + + I    +D N+HP K+ +   + T+I + I + +  ++     S + VL
Sbjct: 302 N---YWAFVSVRIPSETIDPNIHPTKNLVYISHETLISDAIQRKVMCSLQASNYSRNMVL 358

Query: 338 SKKM 341
            +K 
Sbjct: 359 ERKP 362


>gi|149755407|ref|XP_001494013.1| PREDICTED: similar to PMS1 protein homolog 2 (DNA mismatch repair
           protein PMS2) [Equus caballus]
          Length = 916

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 168/404 (41%), Gaps = 29/404 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 63  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLRLKDYGVDLIEVSDNGCG 122

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 123 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 182

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      +I          GT V V+ LF+T+P R   F ++ + E   +  V+    I 
Sbjct: 183 LVFDHNGRIVQKTLYPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKEYAKMIQVLHAYCII 242

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  + +    +  R  +   S + +  E I  V G+  + + +   +          
Sbjct: 243 SAGVRVSCTNQVGQGKRQPVVCTSGSTSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 302

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 303 YGLSCSDALHNLFCISGFISRCTHGVGRSSTDRQFFFINRRPCDPAKVSRLVNEVYHMY- 361

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTS 334
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ +
Sbjct: 362 NRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSEVNKLNVN 421

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                    +  + ++ +   P           +   +E R  T
Sbjct: 422 QQPLLDTEGNLIKIHSAEVEQPLPEKQDRPASSRTRGEEKRAVT 465



 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 15/235 (6%)

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLGIACAQI 413
           +SL    ++L  QE + +                +   E E       T +       Q 
Sbjct: 677 SSLAKQIKRLHHQEQKRAGEQNYRRFRAKICPGENQAAEDELRKEISKTMFAEMEIIGQF 736

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           +  +II++    + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A++
Sbjct: 737 NLGFIITKLDADIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVL 793

Query: 474 MEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
           +E+ E   + G              A  I  +P   +    PQ + ++I  + DS     
Sbjct: 794 IENLEIFRKNGFDFVIDEGAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMC 852

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              R+  + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 853 RPSRVRQMFASRACRKSVMIGTALNASEMRKLITHMGEMDHPWNCPHGRPTMRHI 907


>gi|219116098|ref|XP_002178844.1| mutl-like protein 1 [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409611|gb|EEC49542.1| mutl-like protein 1 [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 695

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/337 (30%), Positives = 165/337 (48%), Gaps = 13/337 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L ++++++IAAGE+++RP   +KEL+EN+LDA ++ V   +  GG +   I DNG G
Sbjct: 12  IQILPQEVVDKIAAGEVVQRPVSVVKELVENALDAGATEVIVTVEKGGLAKITIADNGGG 71

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++P+A  RH TSK+   +DF+++ +FGFRGEAL S+  VSHL + SR P+   G +
Sbjct: 72  IRPQDLPLAATRHATSKLRTTEDFAHLCSFGFRGEALASVSMVSHLCITSRVPEVKVGYK 131

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +A  G K + S +P A  PGT V V DLFF +P R         E N I  V++  +I Y
Sbjct: 132 LAYRGGKPLQSPKPTARKPGTTVLVEDLFFNLPHRKVLRP--ADEYNKILTVLQHYSILY 189

Query: 180 PKVSF---TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG- 235
            +         + K +   +N  +        +      D     ++L      I     
Sbjct: 190 AEQGIGLVCQKSGKKSTTDLNTSNAVAVLRSALDAGQANDDALRKLQLRATQQVIAQVFG 249

Query: 236 --YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
                          Q  +FIN R V+   +   +   Y+E   +   P + L L++ P 
Sbjct: 250 SQLISHLQGFDSRGTQLVLFINSRLVECNGLKRVMEDIYSEYTKIK--PFLYLRLDVPPD 307

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            VDVNVHP K  +       I   I   +++ +++ G
Sbjct: 308 TVDVNVHPTKKEVALLYLDEICKHISSQLRQTLSRAG 344


>gi|313637902|gb|EFS03221.1| DNA mismatch repair protein MutL [Listeria seeligeri FSL S4-171]
          Length = 380

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 178/376 (47%), Gaps = 9/376 (2%)

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +S +  + GY  +P  NR N N     INGR +++  ++  I+  Y   +P+GR+P++VL
Sbjct: 4   ESLDFKISGYAILPEINRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVL 63

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            +E+DP  VDVNVHPAK  +R      +   I Q I++A ++  +     +SKK      
Sbjct: 64  QIEMDPIIVDVNVHPAKLEVRLSKEKELGQLISQMIKQAFHELQLIPDGEISKKQKEIQK 123

Query: 347 QDNAPKTHLPKYATSLTNT-QEKLFLQENRLSTNDLLPSDDPTY-------SEDNDPVEE 398
                 +         T T   K  + E   S ND+   +D  +       SE++   +E
Sbjct: 124 XXXIQMSFEENKPKEETPTLFSKPSIPEYVPSDNDVPIENDFVFETAPVYTSEEHIEQKE 183

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
           +            Q+H  YI +Q  +GL I+DQHAA ER+ +E  R+         Q LL
Sbjct: 184 TTQERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELL 243

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P +++    E   + E    L  +G+  E FG N+  IR  P    K    ++LR+IID
Sbjct: 244 VPIVLEFPTDEYVRLEEQKVKLEEVGVFLENFGQNSYIIRAHPTWFPKDEEEEMLREIID 303

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           E + +S + ++    E+    M+C  SI++   +   +M  LL  + +  +   C HGRP
Sbjct: 304 EAL-TSPSISIHKLREDTAIMMSCKKSIKANHYLTMKDMETLLDTLREASDPFTCPHGRP 362

Query: 579 TFIKLKLSDIEKLFGR 594
             I+    ++EK+F R
Sbjct: 363 VIIQYSTYELEKMFKR 378


>gi|254571717|ref|XP_002492968.1| Protein involved in DNA mismatch repair and crossing-over during
           meiotic recombination [Pichia pastoris GS115]
 gi|238032766|emb|CAY70789.1| Protein involved in DNA mismatch repair and crossing-over during
           meiotic recombination [Pichia pastoris GS115]
 gi|328353019|emb|CCA39417.1| DNA mismatch repair protein mutL [Pichia pastoris CBS 7435]
          Length = 601

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/626 (18%), Positives = 237/626 (37%), Gaps = 67/626 (10%)

Query: 1   MKI-RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M I R+L + +   + +   +      IK L+ENSLDA S+ +   +        +  DN
Sbjct: 1   MSIVRRLDKAVSLALKSNLQLNLIGDVIKGLVENSLDAGSTEIRISVQLDNIICIECEDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSK--IS-DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
           G G+   E+      + +SK  +  +D  ++ T+GFRGE L S+  +S  L + S+   +
Sbjct: 61  GHGIPPSELEKIGSEYWSSKGVLKLEDLEDLKTYGFRGETLHSLSQISKALRISSKVLSS 120

Query: 116 NTGAQIAISGEKI------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLK--SEQVETNL 167
           +       +               +    GT+V++  LF+ +P R  ++   S++  +  
Sbjct: 121 DRSFTTVYNNGTHVVSLTECDDYGIGSPQGTVVKITGLFYNLPVRRTYISNTSQKSISQQ 180

Query: 168 ITDVIRRMAIAYPKVSFTFSTIK------SNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
           I   +  +    P +S   + I+       +   ++   +  +       +I  +  ++ 
Sbjct: 181 IKLALFPLCATNPDLSIKINLIEPDVSCEKSILSVSKAVSPDDRLSTSFDLIFGNMGSSM 240

Query: 222 VELNEKSNEITLQGYTG-IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---P 277
           V L     +       G  PTFN  +    ++F+N R V D+ + + I    A+      
Sbjct: 241 VPLQSSHMDYKADSIFGLNPTFNISHR---FIFLNKRLVMDERLYNLITRELAQLYKSQN 297

Query: 278 LGRYPVVVLLLEIDPRQ-VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           + R     ++    P+   ++   P K+         +       I K         S  
Sbjct: 298 VHRPSFAFVVSFTGPQHPSELTQGPQKTINTVHEIQTLTYLTKCLIDKV--AVNYIGSLQ 355

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
            +K+MI SF +  AP+ +  +    L +     F    +LS +DL               
Sbjct: 356 HNKRMIDSFKE--APEKNKTRKIQPLKDNISPFFCSNLKLSKDDL--------------- 398

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
               +      +    I    +       L+ +DQHA  ER+  EK+ Q++ +       
Sbjct: 399 ---SSVKLVGLMDQKFIVVTLVTKHQGTVLLALDQHACDERVKAEKLFQNYINNLSNCSV 455

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI--PQLLR 514
            +     DL E    L    +  L   GI+      + I +  +P++L++  +    L  
Sbjct: 456 AIENITWDLPEMVMNLFSTFEFSLSTWGIRFISL-NSRIILTHLPSVLTEGKLSHESLKS 514

Query: 515 DIIDEIIDSSTTYT---------------LQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            I+  + D                     + D I N++ ++AC  +++ G  + + +   
Sbjct: 515 GILQYLSDLEAGKKCPKPPGEKWFETLPFIPDMIINVVNSLACRSAVKFGTSLDTAQCRT 574

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKL 585
           +++ ++      QC HGRP+ + L +
Sbjct: 575 IIQNLKSCELPFQCAHGRPSMVPLTM 600


>gi|303389209|ref|XP_003072837.1| DNA mismatch repair protein MutL [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301980|gb|ADM11477.1| DNA mismatch repair protein MutL [Encephalitozoon intestinalis ATCC
           50506]
          Length = 564

 Score =  254 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 244/559 (43%), Gaps = 41/559 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I++L   +I++I+AGE+I RP   +KE+IENSLDA S+ +   I   G S   I DNG
Sbjct: 1   MEIKRLPNDVISRISAGEVITRPYNILKEVIENSLDANSTHIAIKIGIDGLSL-TIEDNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E+  +  +++CTSK++  +D  ++ ++GFRGEAL SI   S + + S+  +N  G
Sbjct: 60  DGIHEEDFELLCKQYCTSKLTKEEDLFSLSSYGFRGEALSSISRCSRIRVRSKRRENEIG 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +      +I +++ + M  G++VE++D+F+   AR      ++ E   +  ++   ++ 
Sbjct: 120 HEAVYRDTEIVAIKGIGMKDGSVVEIKDIFYNNKAREKHFSKKRDEIREMMWLVGIYSVF 179

Query: 179 YPKVSFTFSTIKS--NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
              VSF            K    S            +    ++   +++ +   +  +G+
Sbjct: 180 NEDVSFDLFYGGKLQEIPKSKMYSGKDGSSNEDRVKMKIKMLDELYKVDGELLFLFDEGH 239

Query: 237 ---TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
                 P F+        +F+NGR V  + +   +   Y   I   R P + L L I+  
Sbjct: 240 LAIFSTPQFSLKKGVFI-LFVNGRLVVSQEMKEALFKVYRGLISDERQPFIYLELNIEKS 298

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            VDVN+HP+K  + F N   +   + + I+  +NK          +K +    ++++ ++
Sbjct: 299 MVDVNIHPSKREVLFTNEESVIQRLYECIENKLNKMNYE------QKTLRPLPRESSFQS 352

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            +  Y+   + +  +   +E        L S     +E    + E +++ ++        
Sbjct: 353 PIKVYSDPASQSIGECLEKEKTERREFSLFSLKKLRTE----IVELDSSFFKALNYVGAK 408

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            ++ I+ Q    L+        +  +++ +  DF +     +  L P   D+ +   AL+
Sbjct: 409 DRDTILVQHGSSLLNCRTALLLKEYLYQTLISDFGN--FEKKKTLIPIESDIEDNMRALL 466

Query: 474 MEHDEDLHRLGIKAERFGPNAI---AIREI----PAILSKKNIP-----QLLRDIIDEII 521
            ++           E    N +    I  I    P + +  ++      + L++II+ I 
Sbjct: 467 NDY--------FSIEIVERNIVSVPIISTICIDLPTLWAGLDVKKDSEYETLKNIINTIS 518

Query: 522 DSSTTYTLQDRIENILATM 540
              ++  +  ++ N++   
Sbjct: 519 TLYSSAEMSPKLFNVIKRK 537


>gi|149001723|ref|ZP_01826696.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760181|gb|EDK67170.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP14-BS69]
          Length = 187

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/184 (46%), Positives = 121/184 (65%), Gaps = 2/184 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E + NQIAAGE+IERP+  +KEL+EN++DA SS++   I   G    QITDNG G
Sbjct: 4   IIELPEMLANQIAAGEVIERPASVVKELVENAIDAGSSQIIIEIEEAGLKKVQITDNGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G +
Sbjct: 64  IAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGTK 123

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +   G ++  V P     GT V V DLFF  PARL ++KS+Q E + I D++ R+ +A+P
Sbjct: 124 LVARGGEVEEVIPATSPVGTKVCVEDLFFNTPARLKYMKSQQAELSHIIDIVNRLGLAHP 183

Query: 181 KVSF 184
           ++SF
Sbjct: 184 EISF 187


>gi|17942780|pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
 gi|17942781|pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
          Length = 365

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 149/345 (43%), Gaps = 27/345 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E      V+    I 
Sbjct: 135 LXFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKXVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHXY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTS 358


>gi|73958129|ref|XP_536879.2| PREDICTED: similar to PMS1 protein homolog 2 (DNA mismatch repair
           protein PMS2) [Canis familiaris]
          Length = 876

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 180/458 (39%), Gaps = 37/458 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENS+DA ++ ++  +   G  F +++DNG G
Sbjct: 25  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSVDAGATNIDLKLKDYGVDFIEVSDNGCG 84

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI D  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 85  VKEENFEGLTLKHHTSKIQDFADLTQVETFGFRGEALSSLCALSDVTISTCHTSAKVGTR 144

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +A     KI    P     GT V V+ LF+T+P R   F ++ + E   +  V+    I 
Sbjct: 145 LAFDHNGKIVQKTPHPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 204

Query: 179 YPKVSFTFSTI-KSNRYKMNFQ-STNGNFPERISQVIGEDFINNAVELNE---------- 226
              +  + S      R ++    S + +  E I  V G+  + + +   +          
Sbjct: 205 SVGIRISCSNQVGQGRRQLVVCTSGSSSVKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 264

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     +   + G+        G +  ++ + FIN R      +   +   Y    
Sbjct: 265 YGLNRADVLHSRFHISGFISHCAHGVGRSSTDRQFFFINRRPCDPAKVSRLVNEVYHMY- 323

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI---------- 326
              +YP +VL + +D   +D+NV P K  I  +   ++   +  S+              
Sbjct: 324 NRHQYPFIVLNISVDSECIDINVTPDKRQILLQEEKLLLAVLKTSLIAMFDSNVNKLTVS 383

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
            +  +     + K   +   +  A K   P    +    +  + +   R + +    +++
Sbjct: 384 QQPLLDIEGHVIKTHQAEMDKPLAEKQDSPALFRTEGEEKRAVTISRLRENFSLRHTTEN 443

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
            +         +      +       +H         D
Sbjct: 444 RSRGPQTPESRQISPRQKRHIQLPGALHSPCTPRPVPD 481



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   T +       Q +  +II++    + IVDQHA  E+  FE ++Q    T +  Q L
Sbjct: 681 EISKTMFAEMEIIGQFNLGFIITKLKADIFIVDQHATDEKYNFEMLQQH---TVLQGQRL 737

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           + P+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 738 IAPQTLNLTAVNEAILIENLEIFRKNGFDFVIDEGAPVTERAKLI-SLPTSKNWTFGPQD 796

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 797 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWN 856

Query: 573 CNHGRPTFIKL 583
           C HGRPT   +
Sbjct: 857 CPHGRPTMRHI 867


>gi|328723290|ref|XP_001947410.2| PREDICTED: mismatch repair endonuclease PMS2-like [Acyrthosiphon
           pisum]
          Length = 364

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 17/334 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   + A+KELIENSLDA ++ V   +   GK   ++TDNG 
Sbjct: 4   QIKPINKLDVHKICSGQVVLNLATAVKELIENSLDAGATSVGIKLKEFGKDLVEVTDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +       +H TSKI D  D +++ TFGFRGEAL S+ A+S +T+ +R      G 
Sbjct: 64  GVHPDNFEGLALKHHTSKIKDFADLTSVETFGFRGEALSSLCALSDVTVTTRHSSQECGT 123

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++       I    PVA   GT V + +LF ++P R   F ++ + +   +  V+    +
Sbjct: 124 KLVFDHTGNIKLKVPVAKQVGTAVTLSNLFSSLPVRHKEFHRNLKKDFGKMIQVVTGYCL 183

Query: 178 AYPKVSFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGEDFINNAV---------ELNEK 227
              +V  +     KS    +     +    E IS + G    N+ +         E N+ 
Sbjct: 184 VATQVKLSCINQTKSMNNVLLSTHGSNTVLENISCIYGSKQANSLLVLKKVIPVDEENDI 243

Query: 228 SNEITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
            N   L GY      N  R + ++ + FIN R  +   ++ T+   Y +     +YP V 
Sbjct: 244 PNIFELDGYISSCDHNGGRSSKDRQFYFINSRPCEPLKVIKTVNEVYHQY-NQNQYPFVY 302

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           L + I   +VD+NV P K  I   N   + + I 
Sbjct: 303 LNITIARAEVDINVTPDKRQIFLSNENYLVSIIK 336


>gi|225437328|ref|XP_002267393.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 937

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 110/492 (22%), Positives = 201/492 (40%), Gaps = 15/492 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR +++  +++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG 
Sbjct: 11  TIRAINKGAVHRICSGQVILDLSSAVKELVENSLDAGATSIEIALKEYGQEWFQVIDNGC 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++     +   +H TSK+ D  D  ++ TFGFRGEAL S+ A+ +LT+ +R    +   
Sbjct: 71  GISPNNFKVLALKHHTSKLIDFPDLQSLTTFGFRGEALSSLCALGNLTVETRTKNESVAT 130

Query: 120 QIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
            +       +   +  A   GT V V+ LF  +P R   F ++ + E   +  ++   A+
Sbjct: 131 HLTFDHSGLLRDEKKTARQIGTTVTVKKLFSNLPVRSKEFSRNIRKEYGKLISLLSAYAL 190

Query: 178 AYPKVS--FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-SNEITLQ 234
               V    T +T K+ +  +     +G+  + I  V G +  N    LN   S+   + 
Sbjct: 191 IAGGVRLVCTNTTGKNVKSMVLKTQGSGSLKDNIITVFGMNTFNCLEPLNICLSDSSKVD 250

Query: 235 GYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           G+     +   R   ++ + F+NGR V    +   +   Y       +YP+ ++   +  
Sbjct: 251 GFVSKSGYGSGRTLGDRQFFFVNGRPVDMPKVGKLVNELYKGANSR-QYPIAIMNFTVPT 309

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
           R  DVNV P K  I F +   I + + + ++K  +    S S    ++            
Sbjct: 310 RAYDVNVTPDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETDNSELNP 369

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
                 ++S     +   LQE   S   +     P+    +                   
Sbjct: 370 PQTQILSSSKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDS 429

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           I +++ +     G+   D   +  +   EK     NS  I  Q L   E++         
Sbjct: 430 IEKDFSLR--VHGIKKAD---SFPKWDSEKTTMTINSDTIDHQVLSLSEMVVKGAVGNKG 484

Query: 473 IMEHDEDLHRLG 484
              H   +   G
Sbjct: 485 SSSHSSYIQSFG 496



 Score =  139 bits (351), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 20/201 (9%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           +   +       Q +  +II +    L IVDQHAA E+  FE +     ST +  Q LL 
Sbjct: 711 KKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHL---AQSTVLNQQPLLR 767

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERF----GPNAIAIREIPAILSKKNIPQLLRD 515
           P  +DL   E  +   H + + + G   E            ++ +P   +     + +++
Sbjct: 768 PLRLDLSPEEEVIASIHMDIIRKNGFALEEDLHAPPGQRFKLKAVPFSKNITFGVEDVKE 827

Query: 516 IIDEIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +I  + D     ++               R+  +LA+ AC  S+  G  +   EM R+L 
Sbjct: 828 LISTLADGQGECSILGTYKMDTCDSICPSRVRAMLASRACRSSVMIGDPLGRKEMQRILE 887

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            +    +   C HGRPT   L
Sbjct: 888 HLSDLKSPWNCPHGRPTMRHL 908


>gi|310128478|ref|XP_003120596.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 1 [Homo
           sapiens]
 gi|119575457|gb|EAW55055.1| PMS2 postmeiotic segregation increased 2 (S. cerevisiae) [Homo
           sapiens]
          Length = 725

 Score =  253 bits (647), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365


>gi|269861251|ref|XP_002650338.1| DNA mismatch repair protein PMS1 [Enterocytozoon bieneusi H348]
 gi|220066221|gb|EED43713.1| DNA mismatch repair protein PMS1 [Enterocytozoon bieneusi H348]
          Length = 578

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/599 (20%), Positives = 237/599 (39%), Gaps = 45/599 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KLS   I  I A + I    + +KEL+ENS+DA S+ ++  +         + DNG G
Sbjct: 2   ITKLSTSRIESIKAEQYIHNTFMIVKELVENSIDANSTVIKIFVN---VDLIIVEDNGNG 58

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIH------TFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +    +    +   TSKI   +  +       T+GFRG+AL SI  +    + +   +  
Sbjct: 59  ICINSLDNIGKFGYTSKIKTTYDVLEYKPEQFTYGFRGQALHSIKKMGVTEITTSILEEP 118

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE-QVETNLITDVIRRM 175
                            +A   G  +++ +LF   P R  +  +  +    LI++ +  M
Sbjct: 119 G--IGIKKNLTTGKSEKLAKEKGMTIKITNLFENYPIRKKYNNTYYKKHILLISEYLESM 176

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
            I +        T K+   ++ F        + + +  G+    +  +L           
Sbjct: 177 CIVFNGTFVFNYTEKTKTKELIFNGEKTTLRDFLVRRYGKQIFEHKCDLFNIYF------ 230

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
                 F     N+  +F   R ++   +   I     +       P  VL ++ +    
Sbjct: 231 ------FPVSLKNERLIFSGIRLIK-TSLSRLIEKTCLKF--KDILPSYVLFIKTNTD-- 279

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
            +NV P K  I + N  ++ + ++Q I+  ++    S S    K  +SS  Q+    +  
Sbjct: 280 -INVSPDKMEIIYHNKQLLESLLLQKIEIFMSNNYFSDSVDYKKIRLSSISQNENNNSIS 338

Query: 356 PKYATSLTNT-QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES------EATHYQLGI 408
                S+     +K   Q+ + +  D    D          V+E       E   +    
Sbjct: 339 QSQNHSIETFLTQKNTEQDTKPAIIDEDILDIKPVKNTIQFVKEENIDFTIEKADFNKME 398

Query: 409 ACAQIHQNYIIS----QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
              Q ++ +I+     Q    L++VDQHAA E   FE ++  F    I+ Q+L+TP  + 
Sbjct: 399 VIGQFNKGFILCKLIKQDKSYLILVDQHAADEIKNFEYLKNTFT---ISKQSLVTPIKLT 455

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
           L   +  ++ EH+  L++ G   +    ++  ++ +P           L D+I ++ DSS
Sbjct: 456 LNSIQKLILKEHNTILNKNGFIVDV-HNDSFWLKTVPQYKGHCFSKDDLYDLISKLKDSS 514

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               +  + E+I+A+ AC  S   G  +   ++  +++ +       +C HGRPTFI +
Sbjct: 515 DPNIMCSKFEDIMASKACRQSEMIGTHLPLSKLKNIVQNLSLLNIPWKCPHGRPTFIII 573


>gi|297743867|emb|CBI36837.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  253 bits (646), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 195/466 (41%), Gaps = 12/466 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR +++  +++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG 
Sbjct: 11  TIRAINKGAVHRICSGQVILDLSSAVKELVENSLDAGATSIEIALKEYGQEWFQVIDNGC 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++     +   +H TSK+ D  D  ++ TFGFRGEAL S+ A+ +LT+ +R    +   
Sbjct: 71  GISPNNFKVLALKHHTSKLIDFPDLQSLTTFGFRGEALSSLCALGNLTVETRTKNESVAT 130

Query: 120 QIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
            +       +   +  A   GT V V+ LF  +P R   F ++ + E   +  ++   A+
Sbjct: 131 HLTFDHSGLLRDEKKTARQIGTTVTVKKLFSNLPVRSKEFSRNIRKEYGKLISLLSAYAL 190

Query: 178 AYPKVS--FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-SNEITLQ 234
               V    T +T K+ +  +     +G+  + I  V G +  N    LN   S+   + 
Sbjct: 191 IAGGVRLVCTNTTGKNVKSMVLKTQGSGSLKDNIITVFGMNTFNCLEPLNICLSDSSKVD 250

Query: 235 GYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           G+     +   R   ++ + F+NGR V    +   +   Y       +YP+ ++   +  
Sbjct: 251 GFVSKSGYGSGRTLGDRQFFFVNGRPVDMPKVGKLVNELYKGANSR-QYPIAIMNFTVPT 309

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
           R  DVNV P K  I F +   I + + + ++K  +    S S    ++            
Sbjct: 310 RAYDVNVTPDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETDNSELNP 369

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
                 ++S     +   LQE   S   +     P+    +                   
Sbjct: 370 PQTQILSSSKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDS 429

Query: 413 IHQNYIISQTTDGLV--IVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           I +++ +      L     + HA   R      + + ++  I S+ 
Sbjct: 430 IEKDFSLRVHEMVLKKNNSEMHALVSRSFVNHQKTNDSAGIIESEP 475



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 20/201 (9%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           +   +       Q +  +II +    L IVDQHAA E+  FE +     ST +  Q LL 
Sbjct: 628 KKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHL---AQSTVLNQQPLLR 684

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERF----GPNAIAIREIPAILSKKNIPQLLRD 515
           P  +DL   E  +   H + + + G   E            ++ +P   +     + +++
Sbjct: 685 PLRLDLSPEEEVIASIHMDIIRKNGFALEEDLHAPPGQRFKLKAVPFSKNITFGVEDVKE 744

Query: 516 IIDEIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +I  + D     ++               R+  +LA+ AC  S+  G  +   EM R+L 
Sbjct: 745 LISTLADGQGECSILGTYKMDTCDSICPSRVRAMLASRACRSSVMIGDPLGRKEMQRILE 804

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            +    +   C HGRPT   L
Sbjct: 805 HLSDLKSPWNCPHGRPTMRHL 825


>gi|302881957|ref|XP_003039889.1| hypothetical protein NECHADRAFT_50420 [Nectria haematococca mpVI
           77-13-4]
 gi|256720756|gb|EEU34176.1| hypothetical protein NECHADRAFT_50420 [Nectria haematococca mpVI
           77-13-4]
          Length = 1021

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 166/394 (42%), Gaps = 31/394 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+++  + ++QI +G++I      +KEL+ENS+DA ++ ++      G    ++ DNG 
Sbjct: 3   TIKQIDGRTVHQIQSGQVIVDLCSVVKELVENSVDAGATSIDVRFKNQGLDLIEVADNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+     P    +H TSK+S   D S + TFGFRGEAL S+ A+S LT+ +        G
Sbjct: 63  GIAPANYPSVALKHHTSKLSSYSDISTLQTFGFRGEALASLCALSVLTVTTCQAGEAPKG 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           ++++     K+S    VA + GT V V  LF  +P R     ++ + E N +  ++ + A
Sbjct: 123 SKLSFEPSGKLSGTAVVAASKGTTVSVERLFHNLPVRRRELERNIKREWNKVIALLNQYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFI---------------- 218
                + F+ S   +   +M   ST GN    + I  + G   +                
Sbjct: 183 CIQTNLKFSVSQQPTKGKRMQLFSTKGNPTTRDNIINIFGAKTMTVLVPLDLKLEMQPSK 242

Query: 219 -----NNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTA 271
                 + V+ +  S E+ + G+   P+    R   ++   F+NGR              
Sbjct: 243 VSPALQSDVKDSGSSKEVRIVGHVSRPSHGDGRQTPDRQMFFVNGRPCGLPQFAKAFNEV 302

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y       + P ++  +++D    DVNV P K  I   +   + + +  S+    + +  
Sbjct: 303 YRSY-NASQSPFILADIQLDTHMYDVNVSPDKRSILLHDQNELLDNLRTSLTDLFDSQNY 361

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
           S  +        +  +     T     + + +N+
Sbjct: 362 SVPTAQLMTPKPNLEKQINRATPAGSLSEARSNS 395



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 14/171 (8%)

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L IVDQHA  E+  FE+++    +  + SQ L+ P+ ++L   E  ++M++   +  
Sbjct: 829 HDELFIVDQHATDEKYNFERLQ---QAQTVQSQRLVHPKRLELTALEEEIVMQNISAIEA 885

Query: 483 LGIKA-------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY---TLQDR 532
            G K        E  G     +  +P             ++I  + + S+         +
Sbjct: 886 NGFKVHVDMSGDEPVGSRC-EVLALPMSREVTFTLTDFEELIALLGEESSESKHVPRPSK 944

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +  + A+ AC  S+  G+ +   +M  L+R M        C HGRPT   L
Sbjct: 945 VRKMFASRACRSSVMIGKPLTQGQMETLVRHMADLDKPWNCPHGRPTMRHL 995


>gi|56912184|ref|NP_958476.2| PMS1 protein homolog 1 [Danio rerio]
 gi|22204384|emb|CAD43440.1| SI:dZ72B14.2 (novel protein similar to human postmeiotic
           segregation increased 1-like protein (PMSL1)) [Danio
           rerio]
          Length = 896

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 184/415 (44%), Gaps = 30/415 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L  + +  + + ++I      +KELIENSLDA SS +E  +   G    ++ DNG G+
Sbjct: 2   KALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++ +   +H TSKI   +D   + T+GFRGEAL SI A+S + + ++   ++   Q 
Sbjct: 62  KATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTADDDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           ++    +I S +P  +  GT V   +LF  +P R  +    K  + E   + +++   A+
Sbjct: 122 SVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  T S  K+  ++   +S   +    +  V+G   + N +    +++  EIT+ G
Sbjct: 182 IKPELRVTLSHNKAVVWQ---KSRVSDHRTALMAVLGAASVANMLPVQHHQEQPEITIDG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-----RYPVVV 285
           +   P     + +    ++ ++F+N R V  K IL  I+  Y            RYP  +
Sbjct: 239 FFPKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFM 298

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI---------IQSIQKAINKKGISTSSV 336
           + + I    VDVN+ P K+ +  +N   +   +           + ++ +   G      
Sbjct: 299 MNITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSNGEENLKTAGNPPDVT 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              +   +    +     LP+ ++S    Q+      N  +T+    S+D   + 
Sbjct: 359 SLDEPKRTSPDISLKHPELPEDSSSNAEKQDGELSLSNTANTSSSSISEDWVINR 413


>gi|330800737|ref|XP_003288390.1| hypothetical protein DICPUDRAFT_152626 [Dictyostelium purpureum]
 gi|325081572|gb|EGC35083.1| hypothetical protein DICPUDRAFT_152626 [Dictyostelium purpureum]
          Length = 956

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 94/400 (23%), Positives = 164/400 (41%), Gaps = 32/400 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + ++ +N I +G++I   SIA+KELIENS+DA ++ +E  +   G+   ++ DNG G
Sbjct: 2   IKAIDKESVNNICSGQVIFDLSIAVKELIENSIDAGATSIEIRLKEYGEEIIEVIDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          +H TSK+    D   + TFGFRGEAL S+ A+S++T+++R        +
Sbjct: 62  VEPSNFEALTMKHYTSKLEQFSDLLTVETFGFRGEALSSLCALSNVTVITRTANYPMAQK 121

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIA 178
           +  + + KI S  P+A   GT V++ +LF  +P R    K + + E   +  +I+  A+ 
Sbjct: 122 LVFATDGKIMSQSPIAREVGTTVQLINLFKKLPVRYQEFKRNIKKEYTKLQTIIQAYALI 181

Query: 179 YPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
                 T             ++    N    + I+ + G     +  E     N   + G
Sbjct: 182 STGKRITCYNQAGKAQRNCVISTSGGNSTLRDNIASIFGSKMSQSLDEFTASDNLFKVNG 241

Query: 236 YTGI-------------------------PTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
                                         + +R  A++ + FINGR  +   +   I T
Sbjct: 242 LISKIGLGNGHGQSIGSQPSQSNGAIQSLSSLSRSCADRQFFFINGRPFEHSKLAKEINT 301

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y +    G YPVVV  +E      DVNV P K  I  +  + +   I   ++    K  
Sbjct: 302 LYHQFHKRGAYPVVVFNIETPTDNYDVNVTPDKRTIFIQKESQLLLLISDGLKTMWEKVQ 361

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
                     +     +D   K        S  ++   ++
Sbjct: 362 SIFDPSAPNSLTFDEDEDETIKKKNFSIQQSKISSFPNIY 401



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 10/188 (5%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPE 461
           +++  I   Q +  +II++  + L I+DQHAA E+  FE +     S +I+SQ L+    
Sbjct: 748 YFKQMIVIGQFNLGFIIAKLGNDLFIIDQHAADEKYNFEML---SKSLEISSQPLIKPDP 804

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           + DL   E  +I+E+ +   + G K     E    N I +   P I  +    + + ++I
Sbjct: 805 LSDLTCEEEMIIIENIDLFKKNGFKFIIDPEAPPRNKIQLSAFPMIHGQTFGIKDVYELI 864

Query: 518 DEIIDSSTTYTLQD--RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
             + +S    ++    R+  +LA+ AC  SI  G  +   EM  +L  +    N   C H
Sbjct: 865 YLLKESPIPGSVTKIPRLNTLLASKACRKSIMVGNSLCHKEMKDVLNNLSTLDNPWCCPH 924

Query: 576 GRPTFIKL 583
           GRPT   L
Sbjct: 925 GRPTMRHL 932


>gi|169145696|emb|CAQ15724.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Danio
           rerio]
 gi|169154365|emb|CAQ13467.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Danio
           rerio]
          Length = 896

 Score =  253 bits (645), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 93/415 (22%), Positives = 184/415 (44%), Gaps = 30/415 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L  + +  + + ++I      +KELIENSLDA SS +E  +   G    ++ DNG G+
Sbjct: 2   KALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++ +   +H TSKI   +D   + T+GFRGEAL SI A+S + + ++   ++   Q 
Sbjct: 62  KATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTADDDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           ++    +I S +P  +  GT V   +LF  +P R  +    K  + E   + +++   A+
Sbjct: 122 SVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  T S  K+  ++   +S   +    +  V+G   + N +    +++  EI + G
Sbjct: 182 IKPELRVTLSHNKAVVWQ---KSRVSDHRTALMAVLGAASVANMLPVQHHQEQPEIHIDG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-----RYPVVV 285
           +   P     + +    ++ ++F+N R V  K IL  I+  Y            RYP  +
Sbjct: 239 FFPKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFM 298

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI---------IQSIQKAINKKGISTSSV 336
           + + I    VDVN+ P K+ +  +N   +   +           + ++ +   G  +   
Sbjct: 299 MNITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSNGEENLKTAGNPSDVT 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              +   +    +     LP+ ++S    Q+      N  +T+    S+D   + 
Sbjct: 359 SLDEPKRTSPDISLKHPELPEDSSSNAEKQDGELSLSNTANTSSSSISEDWVINR 413


>gi|317373266|sp|P54278|PMS2_HUMAN RecName: Full=Mismatch repair endonuclease PMS2; AltName: Full=DNA
           mismatch repair protein PMS2; AltName: Full=PMS1 protein
           homolog 2
 gi|41350089|gb|AAS00390.1| unknown [Homo sapiens]
          Length = 862

 Score =  253 bits (645), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365



 Score =  150 bits (378), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    +   A+      +   V  +        ++++               + P+  + 
Sbjct: 512 GSHCSSEYAASSPGDRGSQEHVDSQEKAPKTDDSFSDVDCHSNQEDTGCKFRVLPQPTNL 571

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 572 ATPNTKRFKKEEILSSSD-ICQKLVNTQDMSASQVDVAV------KINKKVVPLDFSMSS 624

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 625 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 683

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 684 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 740

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 741 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 799

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 800 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 853


>gi|62739886|gb|AAH93921.1| PMS2 postmeiotic segregation increased 2 (S. cerevisiae) [Homo
           sapiens]
          Length = 862

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    +   A+      +   V  +        ++++               + P+  + 
Sbjct: 512 GSHCSSEYAASSPGDRGSQEHVDSQEKAPETDDSFSDVDCHSNQEDTGCKFRVLPQPTNL 571

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 572 ATPNTKRFKKEEILSSSD-ICQKLVNTQDMSASQVDVAV------KINKKVVPLDFSISS 624

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 625 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 683

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 684 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 740

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 741 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 799

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 800 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 853


>gi|4505913|ref|NP_000526.1| mismatch repair endonuclease PMS2 isoform a [Homo sapiens]
 gi|535515|gb|AAA63923.1| homolog of yeast mutL gene [Homo sapiens]
 gi|746341|prf||2017356B PMS2 gene
          Length = 862

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365



 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    +   A+      +   V  +        ++++               + P+  + 
Sbjct: 512 GSHCSSEYAASSPGDRGSQEHVDSQEKAPETDDSFSDVDCHSNQEDTGCKFRVLPQPTNL 571

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 572 ATPNTKRFKKEEILSSSD-ICQKLVNTQDMSASQVDVAV------KINKKVVPLDFSMSS 624

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 625 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 683

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 684 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 740

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 741 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 799

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 800 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 853


>gi|260801098|ref|XP_002595433.1| hypothetical protein BRAFLDRAFT_69265 [Branchiostoma floridae]
 gi|229280679|gb|EEN51445.1| hypothetical protein BRAFLDRAFT_69265 [Branchiostoma floridae]
          Length = 429

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/359 (25%), Positives = 156/359 (43%), Gaps = 29/359 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +    ++QI +G+++   + A+KEL+ENSLDA ++ ++  +   G    ++ DNG 
Sbjct: 4   PIQPIDRHSVHQICSGQVVLNLATAMKELVENSLDAGATNIDIRLKEYGSELLEVVDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          +H TSK+ D  D +++ TFGFRGEAL S+ A+S L + +       G 
Sbjct: 64  GVEESNFEGLTLKHHTSKLQDFSDLTSVETFGFRGEALSSLCALSDLCITTCHKNAYVGT 123

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++  +   K+    P A   GT V ++ +F T+P R   FL++ + E + +  V+    I
Sbjct: 124 KLVYNHNGKLIQKTPCARQQGTTVTIQQIFCTLPVRHKEFLRNLKKEYSRMLTVLYAYCI 183

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGED----------------FIN 219
               V  T +       +    STNG  N  E ++ V G                     
Sbjct: 184 ISTNVRITCTNQAGKGKRTTVVSTNGNVNMKENVTNVFGPKQLSGLLQFVQNRPSQEVAE 243

Query: 220 NAVELNEKSNEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                   +   ++ GY    +  +G   A++ Y FIN R      +   +   Y     
Sbjct: 244 EMGVKGGNTELFSITGYLSTCSHGQGRGSADRQYFFINKRPCDLPKVSKVVNEVYHMY-N 302

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
             +YP VVL + +    VDVNV P K  +  +    +   I    + ++ +    T+SV
Sbjct: 303 RHQYPFVVLDISLARDSVDVNVTPDKRQVWLQEERTLLAII----KTSLMQMYEPTASV 357


>gi|557470|gb|AAA50390.1| similar to S. cerevisiae PMS1 Swiss-Prot Accession Number P14242,
           S. cerevisiae MLH1 GenBank Accession Number U07187, E.
           coli MUTL Swiss-Prot Accession Number P23367, Salmonella
           typhimurium MUTL Swiss-Prot Accession Number P14161,
           Streptococcus pneumoniae Swiss-Prot Accession Number
           P14160 [Homo sapiens]
 gi|189065468|dbj|BAG35307.1| unnamed protein product [Homo sapiens]
 gi|306921511|dbj|BAJ17835.1| PMS2 postmeiotic segregation increased 2 [synthetic construct]
          Length = 862

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+    T   G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365



 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    +   A+      +   V  +        ++++               + P+  + 
Sbjct: 512 GSHCSSEYAASSPGDRGSQEHVDSQEKAPETDDSFSDVDCHSNQEDTGCKFRVLPQPTNL 571

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 572 ATPNTKRFKKEEILSSSD-ICQKLVNTQDMSASQVDVAV------KINKKVVPLDFSMSS 624

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 625 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 683

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 684 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 740

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 741 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 799

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 800 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 853


>gi|226286592|gb|EEH42105.1| DNA mismatch repair protein pms1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 1067

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 194/516 (37%), Gaps = 34/516 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIIDLCSVVKELVENSLDAGATSIDIRFKNNGLDLIEVQDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           G++ ++      +H TSK+S  DD S++ +FGFRGEAL S+ A+S+  +++    Q    
Sbjct: 63  GISPDDYETVALKHYTSKLSKLDDLSSLQSFGFRGEALSSLCALSNFHIVTAQAHQAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           +++      K+   + VA   GT   V +LF  +P R     K+ + E   +  ++   A
Sbjct: 123 SKLEFEISGKLKDTQVVAGQRGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F      S    +   +T  N    E IS + G   +     L+         
Sbjct: 183 CVSTGVRFNVKNQMSKGKNVLVFATKSNATTKENISNIYGAKSLLALTPLDLELEFQPSA 242

Query: 226 ----------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                     +++N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 243 TNGKSIRGGIQEANKIFIQGHISKPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYK 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  S+ +   ++  + 
Sbjct: 303 SF-NISQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGTLIESLKTSLTELFERQDQTV 361

Query: 334 SSVLSKKMISSFHQDNAPKTH--LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              L     S+ H+ +   T   L     + +N  ++ + Q+           +      
Sbjct: 362 PQSLIPGKQSTLHRPSGKDTASVLASTKPAESNRAKQSYKQDGGEDEERDEEGEQRAMRT 421

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                 E   T  ++              Q T+     ++ A  +R+    +     +  
Sbjct: 422 FVQRFTERSKTLPEIPETQQNEDGM-ESRQLTEDHSATNEDA--QRVDLATLEATEIAPS 478

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
                 +      L     A   E  ++   LG   
Sbjct: 479 QYPTREIKGSRPSLSTPPTAPSDEQADEQTNLGFTL 514



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 31/195 (15%)

Query: 421  QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
               D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++   L
Sbjct: 836  HKDDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKTLDLTAVEEEIIIDNLPAL 892

Query: 481  HRLGI--KAERFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT------ 528
             + G   + +R G   I     +  +P         + L ++I  + +S    +      
Sbjct: 893  EKNGFIVEVDRSGDEPIGRRCKLTSLPLSKEVVFNIRDLEELIVLLGESPQAQSAPSPSS 952

Query: 529  ---------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
                              ++  + A  AC  SI  G+ + + +M +++R M        C
Sbjct: 953  FSTLSSSPLTSKYVPRPSKVRKMFAMRACRSSIMIGKSLTAKQMGKVVRHMGMIDKPWNC 1012

Query: 574  NHGRPTFIKL-KLSD 587
             HGRPT   L  L +
Sbjct: 1013 PHGRPTMRHLMSLGE 1027


>gi|218674922|ref|ZP_03524591.1| DNA mismatch repair protein [Rhizobium etli GR56]
          Length = 175

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 102/175 (58%), Positives = 135/175 (77%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+LSE +INQIAAGE+IERP+ A KELIEN+LDA ++R+E   AGGGK+  +++DNG
Sbjct: 1   MAIRQLSETLINQIAAGEVIERPASAAKELIENALDAGATRIEIATAGGGKALLRVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
            GM + ++ +AV+RHCTSKIS+   +I T GFRGEALPSIG+V+ L++ SR   +  G +
Sbjct: 61  SGMEAADLELAVRRHCTSKISETLEDIRTLGFRGEALPSIGSVARLSIASRRRDSAGGHE 120

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
           I ++G KI  +RP A NPGTIVEVRDLFF  PARL FLKSE+ E   IT++++RM
Sbjct: 121 ITVAGGKIVHLRPAAANPGTIVEVRDLFFATPARLKFLKSEKAEAGAITEIVKRM 175


>gi|89269106|emb|CAJ81837.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Xenopus
           (Silurana) tropicalis]
          Length = 674

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 160/336 (47%), Gaps = 19/336 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
             L    I  +++ ++I      +KEL+EN+LDA ++ +E  +   G    ++ DNG G+
Sbjct: 2   HCLPSATIRLLSSSQVITSVVSVVKELVENALDANATSIEIKLENFGFDKIEVRDNGKGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            S++ P+   +H TSKI   DD   + T+GFRGEAL SI +V+ + + ++  +++     
Sbjct: 62  KSDDTPVMGVKHYTSKINSHDDLETLETYGFRGEALASICSVAEVHIATKTLEDDFSKLY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     + S +P  +  GT V V  LF  +P R  +    K  + E   I +++    I
Sbjct: 122 ILDSSGHVVSQKPSHLGQGTTVSVHKLFKNLPVRKQYYSTIKKCKEEIRNIQELLMAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQG 235
             P +   F+  K+  ++   +S   +       V+G   +N  V +    +  +I + G
Sbjct: 182 VTPNLRILFTNNKALVWQ---KSKTSDHKMAFMSVVGSAIMNCMVPIQYQSEDPKIFING 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLL 287
           Y   P       +  ++ + ++FIN R +  K IL  +R  + +++  G    YPV  + 
Sbjct: 239 YLPKPYADNTTTSLSSSEKSFLFINRRPIYHKEILKMVRWYHNQSLNKGTPRCYPVFFMN 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
           +E+    +DVN+ P K+ I  +N   + + +   ++
Sbjct: 299 IELPASCLDVNLTPDKTQIMLQNKEFVLHAVENVLR 334


>gi|294947342|ref|XP_002785340.1| dna mismatch repair protein mlh1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899113|gb|EER17136.1| dna mismatch repair protein mlh1, putative [Perkinsus marinus ATCC
           50983]
          Length = 793

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 157/345 (45%), Gaps = 25/345 (7%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQ---------- 55
           L E ++N+IAAGE++ RP  A+KEL+ENS+DA S+R+       G   ++          
Sbjct: 436 LPEAVVNRIAAGEVVARPVNAVKELLENSIDAGSTRI-----QAGCWRYRQQADDISINL 490

Query: 56  ---ITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS 110
              ++DNG G+  E++P+  +R  TSK+   DD  +I T GFRGEAL SI  V+ LT+ +
Sbjct: 491 ATAVSDNGCGIQREDLPILCKRFTTSKLRSFDDLQSIMTHGFRGEALASISHVARLTVTT 550

Query: 111 RPPQNNTGAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLI 168
               +  G +   + GE +   +P A  PGT +   DLF+ +P R    + ++  E   I
Sbjct: 551 MTEDSQVGYRCEYMDGEAVDEAQPTAATPGTTIHFTDLFYNLPTRRRSLMNTQSEEYARI 610

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
            D++ R A  Y  ++FT    +     ++     G      S         + V    + 
Sbjct: 611 VDLVSRFAAEYYTIAFTCRNARHGSADISS-PVRGFLTHGNSAAYYRGSQRHTVYSGGEL 669

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP-VVVLL 287
              +++  + + +          +FINGR V+   +   I   Y+  +P G+ P  V L 
Sbjct: 670 IIHSVRPTSSVTSLG-STGGWCTIFINGRLVECAPLRKAIGDIYSRYLPKGQKPGAVHLS 728

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
             +    VDVNVHP K  +   +   +   +   +   +     S
Sbjct: 729 FNLPGECVDVNVHPTKKDVTISHMESLIEGLQTLLDATLKGHHYS 773


>gi|156229812|gb|AAI52496.1| Zp3a.2 protein [Danio rerio]
          Length = 817

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 185/415 (44%), Gaps = 30/415 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L  + +  + + ++I      +KELIENSLDA SS +E  +   G    ++ DNG G+
Sbjct: 2   KALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++ +   +H TSKI   +D   + T+GFRGEAL SI A+S + + ++   ++   Q 
Sbjct: 62  KATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTADDDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           ++    +I S +P  +  GT V   +LF  +P R  +    K  + E   + +++   A+
Sbjct: 122 SVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  T S  K+  ++   +S   +    +  V+G   + N +    +++  EIT+ G
Sbjct: 182 IKPELRVTLSHNKAVVWQ---KSRVSDHRTALMAVLGAASVANMLPIQHHQEQPEITIDG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-----RYPVVV 285
           +   P     + +    ++ ++F+N R V  K IL  I+  Y            RYP  +
Sbjct: 239 FFPKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFM 298

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI---------IQSIQKAINKKGISTSSV 336
           + + I    VDVN+ P K+ +  +N   +   +           + ++ +   G  +   
Sbjct: 299 MNITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSNGEENLKTAGNPSDVT 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              +   +    +     LP+ ++S    Q+      N  +T+    S+D   + 
Sbjct: 359 SLDEPKRTSPDISLKHPELPEDSSSNAEKQDGELSLSNTANTSSSSISEDWVINR 413


>gi|58476376|gb|AAH89718.1| pms1-prov protein [Xenopus (Silurana) tropicalis]
          Length = 928

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 171/370 (46%), Gaps = 19/370 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+  L    I  +++ ++I      +KEL+EN+LDA ++ +E  +   G    ++ DNG 
Sbjct: 7   KMHCLPSATIRLLSSSQVITSVVSVVKELVENALDANATSIEIKLENFGFDKIEVRDNGK 66

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S++ P+   +H TSKI   DD   + T+GFRGEAL SI +V+ + + ++  +++   
Sbjct: 67  GIKSDDTPVMGVKHYTSKINSHDDLETLETYGFRGEALASICSVAEVHIATKTLEDDFSK 126

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRM 175
              +     + S +P  +  GT V V  LF  +P R  +    K  + E   I +++   
Sbjct: 127 LYILDSSGHVVSQKPSHLGQGTTVSVHKLFKNLPVRKQYYSTIKKCKEEIRNIQELLMAY 186

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITL 233
            I  P +   F+  K+  ++   +S   +       V+G   +N  V +    +  +I +
Sbjct: 187 GIVTPNLRILFTNNKALVWQ---KSKTSDHKMAFMSVVGSAIMNCMVPIQYQSEDPKIFI 243

Query: 234 QGYTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVV 285
            GY   P       +  ++ + ++FIN R +  K IL  +R  + +++  G    YPV  
Sbjct: 244 NGYLPKPYADNTTTSLSSSEKSFLFINRRPIYHKEILKMVRWYHNQSLNKGTPRCYPVFF 303

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           + +E+    +DVN+ P K+ I  +N   + + +   ++       I  +   +    +  
Sbjct: 304 MNIELPASCLDVNLTPDKTQIMLQNKEFVLHAVENVLRSVYPDSQILETHKDAMPEDTVT 363

Query: 346 HQDNAPKTHL 355
           +  +   THL
Sbjct: 364 NNTDNSNTHL 373


>gi|268576302|ref|XP_002643131.1| C. briggsae CBR-MLH-1 protein [Caenorhabditis briggsae]
          Length = 765

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 20/316 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L E ++N++AAGE++ RP  AIKEL+ENSLDA ++ ++ ++  GG    Q++DNG G
Sbjct: 8   IQRLPEDVVNRMAAGEVLARPCNAIKELVENSLDAGATEIKVMMQNGGLKTLQVSDNGKG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E+  +  +R  TSK+   +D  ++ T+GFRGEAL S+  V+ + ++S+        Q
Sbjct: 68  IEREDFELVCERFATSKLQKFEDLMHMKTYGFRGEALASLSHVAKVNIVSKRADAKCAYQ 127

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                 K ++  +P A   GT +   DLF+ +P R N + +   E  ++ D + R AI  
Sbjct: 128 GNFLDGKLLAPTKPAAGKNGTCITATDLFYNLPTRRNKMTTHGEEAKMVYDTLLRFAIHR 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYT 237
           P VSF     +S+ ++      +GNF + +        +   + ++  SN       G  
Sbjct: 188 PDVSFALHQNQSSDFRTK---GDGNFRDVVCN-FPSKILQTVIPISLDSNRLKFKFTGKI 243

Query: 238 GIPTFNRGNANQFYV---------FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
             P  +  + N             FINGR+V+   +   I           +     L L
Sbjct: 244 SKPIASATSKNAQNRKTSRSFFSVFINGRSVRCDILKHPIDDVLQNRSLCVQ--FCALHL 301

Query: 289 EIDPRQVDVNVHPAKS 304
           EID  ++DVNVHP KS
Sbjct: 302 EIDETRIDVNVHPTKS 317


>gi|108742137|gb|AAI17598.1| Unknown (protein for IMAGE:7223102) [Danio rerio]
          Length = 651

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 94/414 (22%), Positives = 184/414 (44%), Gaps = 30/414 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L  + +  + + ++I      +KELIENSLDA SS +E  +   G    ++ DNG G+
Sbjct: 2   KALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
              ++ +   +H TSKI   +D   + T+GFRGEAL SI A+S + + ++   ++   Q 
Sbjct: 62  KDTDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTVDDDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           ++    +I S +P  +  GT V   +LF  +P R  +    K  + E   + +++   A+
Sbjct: 122 SVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  T S  K+  ++   +S   +    +  V+G   + N +    +++  EIT++G
Sbjct: 182 IKPELRVTLSHNKAVVWQ---KSRVSDHRTALMAVLGAASVANMLPVQHHQEQPEITIEG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-----RYPVVV 285
           +   P     + +    ++ ++F+N R V  K IL  I+  Y            RYP  +
Sbjct: 239 FFPKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFM 298

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI---------IQSIQKAINKKGISTSSV 336
           + + I    VDVN+ P K+ +  +N   +   +           + ++ +   G      
Sbjct: 299 MNITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSNGEENLKTAGNHPDVT 358

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +   +    +     LP+ ++S    Q+      N  +T+    S+D   +
Sbjct: 359 SLNEPERTSPDISLKNPELPEDSSSNAEKQDGELSLSNTANTSSSSISEDWVIN 412


>gi|46110094|ref|XP_382105.1| hypothetical protein FG01929.1 [Gibberella zeae PH-1]
          Length = 1003

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 169/419 (40%), Gaps = 33/419 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+++  + ++QI +G++I      +KEL+ENS+D+ ++ ++      G    ++ DNG 
Sbjct: 3   TIKQIDGRTVHQIQSGQVIVDLCSVVKELVENSVDSGATSIDVRFKNQGLDLIEVADNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+  +  P    +H TSK+S   D + + TFGFRGEAL S+ A+S +++ +        G
Sbjct: 63  GIAPDNYPSVALKHHTSKLSSYSDIATLETFGFRGEALASLCALSTVSITTCQQGEVPKG 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           ++++     K+S    VA + GT V V  LF  +P R     ++ + E N +  ++ + A
Sbjct: 123 SKLSFEPSGKLSGTAVVAASKGTTVSVERLFHNLPVRRRELERNIKREWNKVIALLGQYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNE---- 230
                + F+ S   S   ++   ST GN    E I  + G   +   V L          
Sbjct: 183 CIQTNMKFSVSQQPSKGKRIQMFSTKGNPTTRENIINIFGAKTMTVLVPLELCLEMQPST 242

Query: 231 -----------------ITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTA 271
                            + + G+   P+    R   ++   F+NGR              
Sbjct: 243 VSPALRVGSDNDSTSKEVRVVGHVSRPSHGDGRQTPDRQMFFVNGRPCGLPQFAKAFNEV 302

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y       + P ++  +++D    DVNV P K  I   +   + + +  ++    + +  
Sbjct: 303 YKSYNNT-QTPFILADIQLDTHMYDVNVSPDKRSILLHDQNQLLDNLRAALTDLFDSQDY 361

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
              +       S    +  P  + P     +T  +       +R S ++    D P   
Sbjct: 362 QVPTSQLMPFKS--RTETTPSANTPFKPPHVTPKKAPDNSHSHRGSDDEASNEDTPPSR 418



 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 14/172 (8%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D L I+DQHA  E+  FE++++      + SQ L+ P+ ++L   E  +I+++   + 
Sbjct: 806 DNDELFIIDQHATDEKYNFERLQEV---QTVQSQRLVHPKRLELTALEEEIILQNIPAIE 862

Query: 482 RLGIKA-------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY---TLQD 531
             G K        E  G     +  +P             ++I  + + S+         
Sbjct: 863 ANGFKVHVDMSGDEPVGSRC-EVLALPMSREVTFSLADFEELIALLGEESSESKHIPRPS 921

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           ++  + A+ AC  S+  G+ +   +M  L+R M +      C HGRPT   L
Sbjct: 922 KVRKMFASRACRSSVMIGKALTHGQMETLVRHMAELDKPWNCPHGRPTMRHL 973


>gi|302655606|ref|XP_003019589.1| hypothetical protein TRV_06385 [Trichophyton verrucosum HKI 0517]
 gi|291183322|gb|EFE38944.1| hypothetical protein TRV_06385 [Trichophyton verrucosum HKI 0517]
          Length = 1103

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 170/425 (40%), Gaps = 30/425 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 49  TIKPIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIDVRFKNNGLDLIEVQDNGH 108

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++         +H TSK+S   D +++ TFGFRGEAL S+ AVS+LT+++   Q    A
Sbjct: 109 GISPNNYESLALKHYTSKLSTFADLTSLQTFGFRGEALSSLCAVSNLTVVTAEAQQAPRA 168

Query: 120 Q--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    K+ S + VA   GT V + +LF  +P R     K+ + E   +  ++   A
Sbjct: 169 SKLDFEFSGKLKSTQVVAGQKGTTVSIENLFKPLPVRRRELEKNVKREYGKVIALLHAYA 228

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 229 CISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYGTKTLLALMPLDLDLEYEPST 288

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 ++ SN+I + G+   P F   R   ++   F+N R      I       Y    
Sbjct: 289 AAKRFSSQASNKIFVHGHISKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 347

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            L + P +    E+D    DVNV P K  I   +   +   +    + ++ +   +    
Sbjct: 348 NLSQSPFIFANFEMDTSAYDVNVSPDKQTILLHDAGALIESL----KASLTELFENEDQT 403

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           +    ++   Q             S+  TQ+K          +  L  DD     + +P 
Sbjct: 404 VPVSQLTFSKQSQLTPNRGQTPPASVGATQDKPEEPPGNAMYSQELGQDDTVEENNPEPT 463

Query: 397 EESEA 401
           + S++
Sbjct: 464 QTSQS 468



 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 45/206 (21%)

Query: 419  ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
              Q  D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++  
Sbjct: 860  AEQEQDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVKPKTLDLTAVEEEVIIDNLA 916

Query: 479  DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL-------------- 513
             L + G   E         G     I  +P     +   +++ +L+              
Sbjct: 917  ALEKNGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFDTRDLEELIVLLSEAPQQSQNNL 975

Query: 514  ----RDIIDEIIDSSTTY------------TLQDRIENILATMACYGSIRSGRKMQSIEM 557
                RD +D   + +                   ++  + A  AC  SI  G+ +   +M
Sbjct: 976  GKRARDELDSDAEHTEPPGVASSPFSDYLVPRPSKVRKMFAMRACRSSIMIGKNLTHRQM 1035

Query: 558  NRLLREMEKNPNSSQCNHGRPTFIKL 583
              +++ M        C HGRPT   L
Sbjct: 1036 ETVVKHMGTIDKPWNCPHGRPTMRHL 1061


>gi|45184731|ref|NP_982449.1| AAL093Cp [Ashbya gossypii ATCC 10895]
 gi|44980077|gb|AAS50273.1| AAL093Cp [Ashbya gossypii ATCC 10895]
          Length = 734

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 131/711 (18%), Positives = 251/711 (35%), Gaps = 134/711 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E +  ++ +   I     A++EL++NS+DA   R+E  +    +    + D+G 
Sbjct: 8   KIHRLEESVFLRLRSQLSIVSVGAAVRELMQNSVDACCGRLEVSVDLD-RWRVHVRDDGE 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+    Q H TSK+   +D +   T+GFRGE L  +  +S + L+S+       A
Sbjct: 67  GLNREELAKVGQWHYTSKLRRLEDLTATDTYGFRGEGLYMLSNISRVILLSKRAGMKHAA 126

Query: 120 QIAISGEKISSVRPV------AMNPGTIVEVRDLFFTIPARLNFLKS--EQVETNLITDV 171
              +     +  R            GT V + DLF+ +P R   L         + I   
Sbjct: 127 LHRLPATDNALPRDSDDIRLLDGAHGTTVILEDLFYNLPIRRRMLARTPPHRLYDEIRAD 186

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYK-------MNFQSTNGNFPERISQVIGEDFINNAV-E 223
           + ++ +    +  +   IK+N+ K       +   +        +   +G       +  
Sbjct: 187 VLQLLLFCQTLQVSVLVIKNNQEKQIVRSGNLTQLTFPDTLMAVLMCCLGPVVAAKDLQY 246

Query: 224 LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF----ILSTIRTAYA------ 273
           ++ K  +I +QG     T    + +  +++IN R  +DK          R+A        
Sbjct: 247 VSAKYQDIEVQGVIS--TVGVPSKDYQFIYINKRRYEDKRFIFGFNKLFRSARYKEDNML 304

Query: 274 ------ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
                        YPV +L+ +  P   D+  +P+K         +++  + Q  +  + 
Sbjct: 305 AASTRGGQQAYSGYPVYLLVCKGPPSISDLLQNPSKVIENLEYGRVLQPLLCQVAKSFLR 364

Query: 328 KKGISTSSVLSKKM---------------------------------------ISSFHQD 348
             G +T S L +KM                                       I+  +Q 
Sbjct: 365 HYGHATVSFLDRKMTRNRLRAELPLPIQGKTDQDAPESSLHSGTDARHLLNGGINPVNQH 424

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQ--------------ENRLSTNDLLPSDDPTYSEDND 394
              K + P  A+  ++      L+                +        S    +S+++ 
Sbjct: 425 PKRKKYNPPVASMNSSADATKILEHVAKIRTRNINVGLPVQKPVGSGSISSSLAFSDEHL 484

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDG----LVIVDQHAAHERLIFEKMRQDFNST 450
            V+  +     +            +  +       L+I+DQHAA ER+  E   +D+  T
Sbjct: 485 SVDSIQLKDCIVINQIGNKFILLKLEPSRSRTTPLLLILDQHAADERVKLEAYTRDYLFT 544

Query: 451 KITSQTLL----TPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPA 502
            +T+Q           +DL   E  +++ +  ++   G +     E  GP  + ++ IP 
Sbjct: 545 LLTAQPSFYTTPCSIAMDLTHTEADILLHYKREIEFWGFEICYKDEYTGP--LYLKAIPT 602

Query: 503 IL---SKKNIPQLLRDIID---------------------------EIIDSSTTYTLQDR 532
           +     K ++  L R ++                            E         +   
Sbjct: 603 LFDAKKKNDVHYLKRALLQYAYDLKSLKKTKITSIEADGYVTKHLNEFAWWKYMNAIPTV 662

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              IL + AC  +I  G K+   E   L+R++       +C HGRP+ I +
Sbjct: 663 FLEILNSKACRSAIMFGDKLNHDECLFLVRQLSTCNMPLRCAHGRPSVIPI 713


>gi|114612035|ref|XP_001141671.1| PREDICTED: mismatch repair endonuclease PMS2 isoform 2 [Pan
           troglodytes]
          Length = 862

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE---------- 226
              +  + +       +     T G  +  E I  V G+  + + +   +          
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEE 254

Query: 227 --------KSNEITLQGYTGIP--TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+         R + ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSDALHNLFYISGFISQCARGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 314 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 365



 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    ++  A+      +   V  +         +++               + P+  + 
Sbjct: 512 GSHCSSKCVASTPGDRGSQEHVDSQEKAPETDDCFSDVDCHSNQEDTGCKFRVLPQPTNL 571

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 572 ATPNTKRFKKEEILSSSD-ICQKLVNTQDVSASQVDVAV------KINKKVVPLDFSMSS 624

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 625 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 683

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 684 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 740

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 741 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 799

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 800 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 853


>gi|259155136|ref|NP_001158811.1| mismatch repair endonuclease PMS2 [Salmo salar]
 gi|223647526|gb|ACN10521.1| PMS1 protein homolog 2 [Salmo salar]
          Length = 726

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 166/413 (40%), Gaps = 34/413 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G+++   + A+KEL+ENS+DA ++ V+  +   G    +++DNG 
Sbjct: 40  TIKAIDRQSVHQICSGQVVLTLATAVKELVENSIDAGATNVDIKLKDSGTELVEVSDNGK 99

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          +H TSK+ D  D  ++ TFGFRGEAL S+ A+S L++++       G 
Sbjct: 100 GVEEANFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSSLCALSDLSVVTCHEAAQVGT 159

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++       ++   P     GT V +  LF+T+P R   F ++ + E   +  V++   I
Sbjct: 160 KLVFDHNGHLTQRLPHPRQQGTTVSLSQLFYTLPVRHKEFQRNIKKEYTKMIHVLQSYCI 219

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V  T +    +  R  +   S   +  + I  + G   + + +   + S       
Sbjct: 220 VSTGVRITCTNQTGQGKRTPVLCTSGRQSMRDNIGAIFGPKQLQSLLLFQQLSPTDNIKE 279

Query: 231 -------------ITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAET 275
                         T+ G+        G +  ++ + +IN R      +   +   Y   
Sbjct: 280 DYGLSNADLPKDLFTISGFVSRGDHGVGRSATDRQFFYINNRPCDPSKVSKVVNEVYHTF 339

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI-------IQSIQKAINK 328
               +YP V L + +    VDVNV P K  I  +   ++   +        ++    I+ 
Sbjct: 340 -NRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLAILKSSLIAMYETGVNKISL 398

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
             +S S+     +  S+     P         S     E     E+ + +   
Sbjct: 399 NHMSFSTTSKHTLQGSYRPAEPPSDMEGCQVPSSETAPEAGDDSESVIPSPQS 451


>gi|119481545|ref|XP_001260801.1| DNA mismatch repair protein (Pms1), putative [Neosartorya fischeri
           NRRL 181]
 gi|119408955|gb|EAW18904.1| DNA mismatch repair protein (Pms1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 1046

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 171/418 (40%), Gaps = 33/418 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIEVRFKNNGLDSIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ E       +H TSK+S  +D S +HTFGFRGEAL S+ A++   +++         
Sbjct: 63  GISPENYENVALKHYTSKLSSYEDLSRLHTFGFRGEALSSLCALADFRIVTAQANQAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+S  + VA   GT   V  LF  +P R     K+ + E   + +++   A
Sbjct: 123 TRLEFETSGKLSKTQIVAGQKGTTASVEGLFKKLPVRRRELEKNIKREYGKVLNLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVE----------- 223
                V F+          +   STNGN    E I+ V G   +   +            
Sbjct: 183 CISTGVRFSVRNTVGKNRNVVVFSTNGNQTTKENIANVYGAKTLLALIPLDLALEFKPSA 242

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                   + + I ++G+   P F   R   ++   F+N R      I       Y    
Sbjct: 243 AGRRTAEGELHTIQVKGHISRPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 301

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            + + P V     +D    DVNV P K  I   +   + + +    ++++ +   +T   
Sbjct: 302 NVSQSPFVFADFHMDTNAYDVNVSPDKRTILLHDAGALIDSL----KQSLTEMFEATDQT 357

Query: 337 LSKKMISSFHQDNAPK---THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
           + +  I  + Q    +   T        +++ +E +  +++  + +D         S+
Sbjct: 358 VPQSQIPGYKQPGTKQQLGTLQAVTPRRVSSEKEAITGEQDHPADDDEDTESSHLSSQ 415



 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 32/257 (12%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            L +    +   Q  L    + +  +    +   T + +           +       Q 
Sbjct: 735 SLSRIEGQMKKVQHSLRSYRSNVDYSQEDTAAAMTVTAEERLSLTVTKDDFARMRIIGQF 794

Query: 414 HQNYIISQT---------TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
           +  +I++            D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +D
Sbjct: 795 NLGFILATRSSEDGSADSKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQPKRLD 851

Query: 465 LLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL 513
           L   E  +++E+   L + G   E         G     I  +P     +   +++ +L+
Sbjct: 852 LTAVEEEIVIENRTALEKNGFVVEVDDSGNEPIGQRCKLI-SLPLSKEVVFGVRDLEELI 910

Query: 514 RDIIDEIIDSSTTYT-------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
             ++ E+  +S++ +          ++  + A  AC  SI  G+ +   +M R++R M  
Sbjct: 911 V-LLSEMPATSSSGSAMQTHIPRPSKVRKMFAMRACRSSIMIGKSLTQTQMVRVVRNMGT 969

Query: 567 NPNSSQCNHGRPTFIKL 583
                 C HGRPT   L
Sbjct: 970 IDKPWNCPHGRPTMRHL 986


>gi|284520128|ref|NP_001136373.2| PMS1 postmeiotic segregation increased 1 [Xenopus (Silurana)
           tropicalis]
          Length = 921

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 169/368 (45%), Gaps = 19/368 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
             L    I  +++ ++I      +KEL+EN+LDA ++ +E  +   G    ++ DNG G+
Sbjct: 2   HCLPSATIRLLSSSQVITSVVSVVKELVENALDANATSIEIKLENFGFDKIEVRDNGKGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            S++ P+   +H TSKI   DD   + T+GFRGEAL SI +V+ + + ++  +++     
Sbjct: 62  KSDDTPVMGVKHYTSKINSHDDLETLETYGFRGEALASICSVAEVHIATKTLEDDFSKLY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     + S +P  +  GT V V  LF  +P R  +    K  + E   I +++    I
Sbjct: 122 ILDSSGHVVSQKPSHLGQGTTVSVHKLFKNLPVRKQYYSTIKKCKEEIRNIQELLMAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQG 235
             P +   F+  K+  ++   +S   +       V+G   +N  V +    +  +I + G
Sbjct: 182 VTPNLRILFTNNKALVWQ---KSKTSDHKMAFMSVVGSAIMNCMVPIQYQSEDPKIFING 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLL 287
           Y   P       +  ++ + ++FIN R +  K IL  +R  + +++  G    YPV  + 
Sbjct: 239 YLPKPYADNTTTSLSSSEKSFLFINRRPIYHKEILKMVRWYHNQSLNKGTPRCYPVFFMN 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           +E+    +DVN+ P K+ I  +N   + + +   ++       I  +   +    +  + 
Sbjct: 299 IELPASCLDVNLTPDKTQIMLQNKEFVLHAVENVLRSVYPDSQILETHKDAMPEDTVTNN 358

Query: 348 DNAPKTHL 355
            +   THL
Sbjct: 359 TDNSNTHL 366


>gi|291534087|emb|CBL07200.1| DNA mismatch repair enzyme (predicted ATPase) [Megamonas
           hypermegale ART12/1]
          Length = 495

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 205/494 (41%), Gaps = 60/494 (12%)

Query: 155 LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG 214
             FLK+   E N I D I ++A++ P ++F                 NG+  + I  + G
Sbjct: 6   KKFLKTTTTEANKINDFIIKLALSKPNIAFKLINNNKIAIT---TPGNGSLYDAIECIYG 62

Query: 215 EDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAE 274
                  + +   +++I + G+   P   R + +     INGR V  + I   I  AY  
Sbjct: 63  TKVSEELLPIEAITDDIKVTGFISKPAIIRSSRSWQTFVINGRVVNSRIISKAIDNAYHS 122

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
            +P   YP V+L +E++ R +D+NVHP K+ I+F + +++   I  ++ +A+        
Sbjct: 123 LLPKSGYPFVILNIEVNKRTIDINVHPQKAEIKFEDESLLFKTIYHAVLEAVKPNDNQAL 182

Query: 335 SVLSKKMISSFH--QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
           S  +  +       +   P+      + ++ +T    F Q +    + L  +  P+ ++ 
Sbjct: 183 SDFAIPVTDKALHIEKTVPEQINMDLSENMPSTSANSFKQNSINHISSLKNNTTPSTTDL 242

Query: 393 NDPVEESEATHYQ----------------------------------------------- 405
           N   +  E  H                                                 
Sbjct: 243 NKFRQARETLHPNLSNYHNNTVKETAVQNYQADTTTNPQTDINISSKENLTDCQNSTQLL 302

Query: 406 ----LGIACAQIHQNYIISQ-TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                     QI   +I++Q    G+ I+DQHAAHER++++K      + +I  Q LL  
Sbjct: 303 KEAVNLTPIGQIDDCFIVAQGPNGGMYIIDQHAAHERILYDKF--AKQTERIPVQPLLMH 360

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             +D+   E  LI E+ + L+ LG   E  G N I ++E+PA +  +    + R+I+  +
Sbjct: 361 LFLDVNNSELTLIEENQQILYDLGFNVELAGQNQIRLKEVPADIKPQESEDIFREILISL 420

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                T T Q+   + LA  AC  +I++G  +   +M  +L E+ +      C HGRPT 
Sbjct: 421 SQL-HTPTPQEIRHSCLAMTACKAAIKAGDVLNITQMKIILNELAQTTLPYTCPHGRPTI 479

Query: 581 IKLKLSDIEKLFGR 594
           IK    D+EK+F R
Sbjct: 480 IKFSTYDLEKMFKR 493


>gi|301604746|ref|XP_002932025.1| PREDICTED: mismatch repair endonuclease PMS2-like [Xenopus
           (Silurana) tropicalis]
          Length = 848

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 28/331 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   + A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 13  IKPIDRKSVHQICSGQVVLSLATAVKELLENSIDAGATSIDIKLKEYGAESIEVSDNGCG 72

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          +H TSK+ D  D  ++ TFGFRGEAL S+ A+S L++++       G +
Sbjct: 73  VEENNFEGLTLKHHTSKLQDFSDLISVETFGFRGEALSSLCALSDLSIVTCHKTAKVGTR 132

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    PV+   GT V ++ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 133 LVYDHNGKIIQKSPVSRQQGTTVSIQQLFYTLPVRHKEFQRNLKKEFTKMVQVLQAYCII 192

Query: 179 YPKVSFTFST---IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--------- 226
              V  T +           +    +  +  E I  V G+  + + +   +         
Sbjct: 193 STGVRITCTNQVGQGKRNPVVCSSGSTSDVKENIGAVFGQKQLQSLIPFVQLPPSETVCE 252

Query: 227 ---------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAET 275
                          + GY        G +  ++ + FIN R      +   +   Y   
Sbjct: 253 EYGLIHEDTPHGFYNISGYISRCDHGVGRSSTDRQFFFINQRPCDPAKVSKIVNEVYH-L 311

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
               +YP VVL + +    VD+NV P K  I
Sbjct: 312 YNRHQYPFVVLNICVSSECVDINVTPDKRQI 342



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 107/284 (37%), Gaps = 15/284 (5%)

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
           + I    +  +    + ++  +    + +          LP    +LT   E++  Q+  
Sbjct: 565 DTIPTCKRAKVEDDALPSACTVQPDTVDAPMNIQRRTKPLPFSMANLTKGMERIKQQQRI 624

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLGIACAQIHQNYIISQTTDGLVIV 429
               +         +  ++   E E         +       Q +  +II++    L ++
Sbjct: 625 KEETERYRRFRAKINPGDNQAAEDELRKEISKEMFAKMEIIGQFNLGFIITKLDSDLFMI 684

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           DQHA  E+  FE ++     T +  Q L+ P+ + L      +++++ +   + G     
Sbjct: 685 DQHATDEKYNFEMLQ---QETVLQGQRLIAPQKLHLTAVNETVLIDNLDIFKKNGFDF-I 740

Query: 490 FGPNA-----IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           F   A     + +  +P   +     Q + ++I  + DS        R+  + A+ AC  
Sbjct: 741 FDEEAPITERVKLISLPTSKNWTFGQQDIEELIFMLSDSPGVMCRPSRVRQMFASRACRK 800

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           S+  G  +   EM +L+  M +  +   C HGRPT   +   D+
Sbjct: 801 SVMIGTALNVHEMKKLVTHMGEIEHPWNCPHGRPTMRHIANLDM 844


>gi|320032950|gb|EFW14900.1| DNA mismatch repair protein [Coccidioides posadasii str. Silveira]
          Length = 939

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 164/430 (38%), Gaps = 32/430 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + I+QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSIHQIQSGQVIVDLCSVVKELVENSLDAGATSIDIRFKNNGLDLIEVQDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+          +H TSK+S  +D S++ TFGFRGEAL S+ A+S   +++         
Sbjct: 63  GIPPNNYEGVALKHHTSKLSTFEDLSSLQTFGFRGEALSSLCALSDFHIVTAQANQAPKA 122

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+ + + VA   GT+  V  LF  +P R     K+ + E   +  ++   A
Sbjct: 123 TRLDFEVSGKLKNTQVVAGQRGTVASVEGLFQRLPVRRRELEKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 183 CISTGVRFNVKNQMPKGKSVVVFATKSNPTTKENISNVYGAKTLLALIPLDLELEFEPSA 242

Query: 224 --------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                    + + N+I + GY   P F   R   ++   F+N R      I       Y 
Sbjct: 243 ESKTSRRQQDGQVNKIFVHGYISKPVFGEGRQTPDRQMFFVNSRPCGLPQIARAFNEVYR 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS-IQKAINKKGIS 332
               + + P +    E++    DVNV P K  I   +   +   +  S  +    +    
Sbjct: 303 SF-NISQSPFIFANFEMNTNAYDVNVSPDKRTILLHDAGALIESLKASLTKLFEGQDQTV 361

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
             S L+    S+  Q      + P  A + +N+       E  +  +  +   D  + + 
Sbjct: 362 PQSQLAVPRQSTMKQ--LVNKNAPSIAAAPSNSSPTTQRSEEAIGVDKEVQESDHEFDKQ 419

Query: 393 NDPVEESEAT 402
              +  S   
Sbjct: 420 RTSLSASPEP 429



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 13/182 (7%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            L  Y  S     E+   Q++   T   L      +++    V       + L I     
Sbjct: 718 SLKHYKASEEPISEEASEQQDSAETRLSLTVSKEDFAKM--RVVGQFNLGFILAIRPGTD 775

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
             ++  + T D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I
Sbjct: 776 STDFQDNPTKDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVRPKTLDLTAVEEEVI 832

Query: 474 MEHDEDLHRLGIKA-------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +++   L + G          E  G     I  +P         + L ++I  + +S   
Sbjct: 833 IDNIPTLEKNGFIVDIDTSGDEPIGRRCKLI-SLPLSKEVVFNTRDLEELIVLLSESPQH 891

Query: 527 YT 528
           + 
Sbjct: 892 HR 893


>gi|311302926|gb|ADP89037.1| MLH1-like protein 1 [Trichomonas vaginalis]
          Length = 779

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 6/308 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           PS   KEL+ENS+DA S R+   +  GG S  +I+DNG G+ + ++P+A QRH TSKI  
Sbjct: 4   PSNVAKELLENSIDAGSKRISIELQNGGYSLIKISDNGCGINAADMPLACQRHATSKIQS 63

Query: 83  --DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-IAISGEKISSVRPVAMNPG 139
             D  N+ TFGFRGEAL S+  VSHL+++S+  +++ G       G  I  +  V +  G
Sbjct: 64  FNDLRNVTTFGFRGEALFSMSCVSHLSILSKTEESSFGYSGNFQDGNLIGELSTVPITIG 123

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           T V + DLF+  P +L        +   I  +++R AIAYP++SF+       +   +  
Sbjct: 124 TTVTISDLFYNKPTKLRTSPDSATQNRKILQIVQRYAIAYPEISFSVICDGKEKMMTHGS 183

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           S++ +    +  +         V   + +   T++ Y G P+  +       VF+NGR V
Sbjct: 184 SSHYDVISLLYGIDAR--SATFVLTGDIAKNTTVEMYLGSPSAKKQLKES-AVFVNGRLV 240

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           Q   I   I   Y   +  G  P   +LL + P +VDVNVHP K  + F N   + + I 
Sbjct: 241 QCDHIKRAINAVYGSFLMRGEKPFAFVLLRMPPDKVDVNVHPTKKDVIFTNEQSLIDNIC 300

Query: 320 QSIQKAIN 327
             I   + 
Sbjct: 301 DIILAELK 308


>gi|14279172|gb|AAK58517.1|AF252300_2 putative DNA mismatch repair protein HexB [Streptococcus
           thermophilus]
          Length = 179

 Score =  250 bits (639), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/177 (44%), Positives = 115/177 (64%), Gaps = 2/177 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L E + NQIAAGE++ERP+  +KEL+EN++DA S+++   +   G S  QITDNG 
Sbjct: 3   KIIELPEVLANQIAAGEVVERPASVVKELVENAIDAGSTQITIEVEESGLSKIQITDNGE 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   ++ M+++RH TSKI +  D   I T GFRGEALPSI ++SHLT+++       G 
Sbjct: 63  GMAQADVAMSLRRHATSKIKNQGDLFRIRTLGFRGEALPSIASISHLTIVTAADGEVYGT 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           ++   G +I S  P++   GT + V +LF+  PARL ++KS Q E   I DV+ R++
Sbjct: 123 KLVAKGGEIESQDPISTPVGTKITVENLFYNTPARLKYMKSLQAELAHIVDVVNRLS 179


>gi|311302930|gb|ADP89039.1| MLH1-like protein 1 [Trichomonas vaginalis]
          Length = 779

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 6/308 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           PS   KEL+ENS+DA S R+   +  GG S  +I+DNG G+ + ++P+A QRH TSKI  
Sbjct: 4   PSNVAKELLENSIDAGSKRISIELQNGGYSLIKISDNGCGINAADMPLACQRHATSKIQS 63

Query: 83  --DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-IAISGEKISSVRPVAMNPG 139
             D  N+ TFGFRGEAL S+  VSHL+++S+  +++ G       G  I  +  V +  G
Sbjct: 64  FNDLRNVTTFGFRGEALFSMSCVSHLSILSKTEESSFGYSGNFQDGNLIGELSTVPITIG 123

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           T V + DLF+  P +L        +   I  +++R AIAYP++SF+       +   +  
Sbjct: 124 TTVTISDLFYNKPTKLRTSPDSATQNRKILQIVQRYAIAYPEISFSVICDGKEKMMTHGS 183

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           S++ +    +  +         V   + +   T++ Y G P+  +       VF+NGR V
Sbjct: 184 SSHYDVISLLYGIDAR--SATFVLTGDIAKNTTVEMYLGSPSAKKQLKES-AVFVNGRLV 240

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           Q   I   I   Y   +  G  P   +LL + P +VDVNVHP K  + F N   + + I 
Sbjct: 241 QCDHIKRAINAVYGSFLMRGEKPFAFVLLRMPPDKVDVNVHPTKKDVIFTNEQSLIDNIC 300

Query: 320 QSIQKAIN 327
             I   + 
Sbjct: 301 DIILAELK 308


>gi|149408994|ref|XP_001512507.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 879

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 153/352 (43%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++     A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 17  IKPIDRKSVHQICSGQVVLNLGTAVKELVENSVDAGATNIDLKLKEYGADLIEVSDNGCG 76

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI D  D +++ TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 77  VEEENFAGLTLKHYTSKIQDFSDLTHVETFGFRGEALSSLCALSDVTINTCHKSAKVGTR 136

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       I+   P     GT V V+ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 137 LVFDHNGTITQKVPFPRQQGTTVIVQQLFYTLPVRHKEFQRNIKKEFAKMVQVLQAYCII 196

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNE---------- 226
              +    +       +     TNGN    E I  V G+  + + +   +          
Sbjct: 197 SAGIRINCTNQVGQGKRQPVVCTNGNSTVKENIGAVFGQKQLQSLISFVQLPPSESVCEE 256

Query: 227 --------KSNEITLQGYTGIPTFNRGNAN--QFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N  T+ G+        G +   + + FIN R      +   +   Y    
Sbjct: 257 YGLKFSDAPHNFYTITGFISRCDHGVGRSTTERQFYFINQRPCDPAKVSRLVNEVYHTY- 315

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 316 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQKEKLLLAVLKTSLLGMFDS 367



 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 113/297 (38%), Gaps = 13/297 (4%)

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
             NV  AKS  +    + + +         ++ +      V  K +   F  +   K   
Sbjct: 588 TPNVKRAKSEKKVALSSEVPSKFTSDQNNTLSSQVDVAIKVNKKMVPVEFSMNALAK--- 644

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                   + +EK   +           S     + +++  +E     +       Q + 
Sbjct: 645 ---RIKQLHREEKNRARAQNYRRFRAKISPGENQAAEDELRKEISKEMFTQMEIIGQFNL 701

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            +II++    L I+DQHA  E+  FE ++          Q L+ P+ ++L     A+++E
Sbjct: 702 GFIITKLNADLFIIDQHATDEKYNFEMLQLHSVPQG---QRLIVPQNLNLTAVNEAILIE 758

Query: 476 HDEDLHRLGIK--AERFGP--NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
           + E   + G     +   P    + +  +P   +    PQ + ++I  + D         
Sbjct: 759 NLEIFKKNGFDFIIDEKAPVTERVKLISLPTSKNWTFGPQDIDEMIFMLSDCPGVMCRPS 818

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           R+  + A+ AC  S+  G  + +IEM +L+  M +  +   C HGRPT   +   D+
Sbjct: 819 RVRQMFASRACRKSVMIGTALNTIEMKKLITHMSEIEHPWNCPHGRPTMRHIASLDM 875


>gi|294657454|ref|XP_459762.2| DEHA2E10472p [Debaryomyces hansenii CBS767]
 gi|199432704|emb|CAG88001.2| DEHA2E10472p [Debaryomyces hansenii]
          Length = 726

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 138/716 (19%), Positives = 248/716 (34%), Gaps = 137/716 (19%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I KL E +++ + +   I     AI+EL++NSLDA ++ V   +     S   + D+G 
Sbjct: 10  SIHKLPESVLSCLQSQITISSFQAAIRELLQNSLDANANEVIIKLDFRSLSVC-VEDDGR 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ----- 114
           GM  EE+    +R+ TSKI   +   +I TFGFRGEAL SIG +S L+++S+        
Sbjct: 69  GMRPEELEKVGKRYFTSKIDSLESLKDIETFGFRGEALHSIGCISRLSIISKHTSNSQVF 128

Query: 115 ------NNTGAQIAISGEKISSVRPVA------MNPGTIVEVRDLFFTIPARLNFLKSE- 161
                     A I    E+IS+              GTIV    LF  +P R + +    
Sbjct: 129 KLKEIKQEQSACIYKFEEEISNYLENHFKFDPISQSGTIVTATSLFANVPVRRSQILKIP 188

Query: 162 -QVETNLITDVIRRMAIAYPKVSFT----FSTIKSNRYKMNFQSTNGN-----FPERISQ 211
                  +  VI +  I  P V  T     ST    +  +  + ++ +     +      
Sbjct: 189 EHKLMEDVRQVILQSLIGRPNVKLTLIKLDSTSGDFQKTIYVERSHESELQARYATIFKS 248

Query: 212 VIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRT-----VQDKFILS 266
           + G   ++    +     +  L G  G+  F   +    Y+F+N R         K++  
Sbjct: 249 IYGHSLLSEYETVRANFQDYKLDGIIGL--FPSQSKAFQYIFVNQRPLLISNEDSKYLNK 306

Query: 267 TIRTAYAETI------------------------PLGRYPVVVLLLEIDPRQVDVNVHPA 302
              TA    +                           R+PV ++ ++      D+   P+
Sbjct: 307 IFVTANFGGMLTSTASNISLSPSKVSPNKQYTSKSFSRFPVFIINIQCPIIIEDLFQDPS 366

Query: 303 KSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
           KS     +  +I N +       ++ +G    +       S        K+  P    ++
Sbjct: 367 KSIYYSNHMKLILNMLRNVFSSFLSAQGYECVTRDPSVSPSPSPSPKRQKSERPPLKQNI 426

Query: 363 T------------------------NTQEKLFLQENRLSTNDLLPSDDPTYSED------ 392
           +                        +T +  F Q     T     ++    S        
Sbjct: 427 SFIPVLKPSLKRETLKSTIDFIDGNHTPKFPFNQLASTDTQRFSANEFNLQSICYTGNNK 486

Query: 393 -----------NDPVEESEATHYQLGIACAQIHQNYII----------SQTTDGLVIVDQ 431
                       + + +            +Q+ + +I+          S  +  +++VDQ
Sbjct: 487 SMNANARDLDLQETIIDKNDLIDGNYRIISQVDRKFILLVMPASNSVSSTKSPTILVVDQ 546

Query: 432 HAAHERLIFEKMRQDFNSTKITSQ---TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           HA  ER+  E + +DF    +       L  P      + E  L   +  +   LGI   
Sbjct: 547 HACDERIRVEALFKDFILMLLDKTLGIELNKPLTFTASDREKNLFNSYGSNFESLGINYA 606

Query: 489 RFGPNAIAIREIPAILSKK---NIPQLLRDIIDEIIDSS------------------TTY 527
               + + +  +P IL +K   +I  L   ++  + D                       
Sbjct: 607 TNAEHKLIVTHLPHILIEKVGTDIDFLKSCLLQHLFDLEYHKKKVNISNLATEGWFQNVV 666

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            L   I + + + AC  +I  G K+   EM  L++ + +     QC HGRP+ + L
Sbjct: 667 QLPQVIIDCINSKACRSAIMFGDKLTVEEMMYLIKSLSECNQPFQCAHGRPSIVPL 722


>gi|114585966|ref|XP_001170412.1| PREDICTED: MutL protein homolog 1 isoform 7 [Pan troglodytes]
          Length = 687

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I  
Sbjct: 128 ASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHN 187

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN 219
             +SF+          +          + I  + G     
Sbjct: 188 AGISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSR 226



 Score = 38.1 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           LEI P+ VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 227 LEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 265


>gi|19115329|ref|NP_594417.1| MutL family mismatch-repair protein Pms1 [Schizosaccharomyces pombe
           972h-]
 gi|1709684|sp|P54280|PMS1_SCHPO RecName: Full=DNA mismatch repair protein pms1
 gi|1246854|emb|CAA65400.1| pms1 [Schizosaccharomyces pombe]
 gi|2239195|emb|CAB10113.1| MutL family mismatch-repair protein Pms1 [Schizosaccharomyces
           pombe]
          Length = 794

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/408 (23%), Positives = 165/408 (40%), Gaps = 15/408 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            ++ +    +++I +G++I   + A+KEL+ENSLD+ ++ +E      G +  ++ DNG 
Sbjct: 3   TVKPIDANTVHKICSGQVITDVASAVKELVENSLDSGATTIEIRFKNYGINSIEVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+ + +     ++H TSKI+D  D   + TFGFRGEAL S+ AV  + + +        G
Sbjct: 63  GIDAGDYESIGKKHFTSKITDFEDLEALQTFGFRGEALSSLCAVGQVIISTATQNEAPKG 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIRRMA 176
            Q+ +  E  +     +    GT V V DLF T+P R     K+ + E +    +++  A
Sbjct: 123 VQLNLDHEGSLKDKLTIPFQRGTSVMVNDLFCTLPVRRKLLEKNYKREFSKAISLLQAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQ 234
                  F       N  K+   STN   +    I  V G    ++ +      N+  ++
Sbjct: 183 TISTNKRFMVYHQTKNSGKLLQLSTNSNKDMKLNIMNVFGTKVSSSLIP----WNDGIIE 238

Query: 235 GYTGIPT--FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           GY   P     R +  +  +FIN R V    I   I+  +       + P   + L I  
Sbjct: 239 GYISRPHVGSTRASNERQMLFINRRLVNLPKIARVIQEVFKPYSMA-QSPFFAINLRITN 297

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ-DNAP 351
             +D+NV P K  +       I  FI  S+Q      G + S   S+ + S   Q  ++ 
Sbjct: 298 GTIDINVSPDKKSVFLSEEDSIIEFIKNSLQNLCESCGHAISCSRSQSIFSYSSQIPDSS 357

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
                +         E     ++  S            +     +  S
Sbjct: 358 GDSTDQELPQSIPATESETSDDSSFSYKRSPCKRKLVEATAQPAISTS 405



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 8/191 (4%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +       Q ++ +I+    + L I+DQHA+ E+  +E ++ +     I SQ L+ P+ 
Sbjct: 607 DFLRMRVVGQFNRGFIVVVHGNNLFIIDQHASDEKFNYEHLKSNL---VINSQDLVLPKR 663

Query: 463 IDLLEGECALIMEHDEDLHRLGI----KAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
           +DL   E  ++++H + + R G        +   N   +  +P   +       L +II 
Sbjct: 664 LDLAATEETVLIDHIDLIRRKGFGVAIDLNQRVGNRCTLLSVPTSKNVIFDTSDLLEIIS 723

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            + +         R+E +LA+ AC  S+  GR +   EMN ++R + +      C HGRP
Sbjct: 724 VLSEHPQIDPFSSRLERMLASKACRSSVMIGRALTISEMNTIVRHLAELSKPWNCPHGRP 783

Query: 579 TFIK-LKLSDI 588
           T    L+L DI
Sbjct: 784 TMRHLLRLKDI 794


>gi|119189999|ref|XP_001245606.1| hypothetical protein CIMG_05047 [Coccidioides immitis RS]
          Length = 939

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 95/430 (22%), Positives = 166/430 (38%), Gaps = 32/430 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + I+QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSIHQIQSGQVIVDLCSVVKELVENSLDAGATSIDIRFKNNGLDLIEVQDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+          +H TSK+S  +D S++ TFGFRGEAL S+ A+S   +++         
Sbjct: 63  GIPPNNYEGVALKHHTSKLSTFEDLSSLQTFGFRGEALSSLCALSDFHIVTAQANQAPKA 122

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+ + + VA   GT+  V  LF  +P R     K+ + E   +  ++   A
Sbjct: 123 TRLDFEVSGKLKNTQVVAGQRGTVASVEGLFQRLPVRRRELEKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK------- 227
                V F           +   +T  N    E IS V G   +   + L+ +       
Sbjct: 183 CISTGVRFNVKNQMPKGKSVVVFATKSNPTTKENISNVYGAKTLLALIPLDLELEFEPSA 242

Query: 228 ------------SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                        N+I + GY   P F   R   ++   F+N R      I       Y 
Sbjct: 243 ESKTSRRQQDGLVNKIFVHGYISKPVFGEGRQTPDRQMFFVNSRPCGLPQIARAFNEVYR 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGIS 332
               + + P +    E++    DVNV P K  I   +   +   +  S+ +    +    
Sbjct: 303 SF-NISQSPFIFANFEMNTNAYDVNVSPDKRTILLHDAGALIESLKTSLTELFEGQDQTV 361

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
             S L+    S+  Q      + P  A + +N+       E  +  +  +   D  + E 
Sbjct: 362 PQSQLAVPRQSTMKQ--LVNKNAPSIAAAPSNSLPTTQRSEEAIGVDKEVQESDHEFDEQ 419

Query: 393 NDPVEESEAT 402
              +  S   
Sbjct: 420 RTSLSASPEP 429



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 13/184 (7%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            L  Y  S     E+   Q++   T   L      +++    V       + L I     
Sbjct: 718 SLKNYKASEEPISEEASEQQDSAETRLSLTVSKDDFAKM--RVVGQFNLGFILAIRPGTD 775

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
             ++  + T D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I
Sbjct: 776 STDFQDNPTKDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVRPKTLDLTAVEEEVI 832

Query: 474 MEHDEDLHRLGIKA-------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +++   L + G          E  G     I  +P         + L ++I  + +S   
Sbjct: 833 IDNIPTLEKNGFIVDIDTSGDEPIGRRCKLI-SLPLSKEVVFNTRDLEELIVLLSESPQH 891

Query: 527 YTLQ 530
           +   
Sbjct: 892 HRAP 895


>gi|33416431|gb|AAH55651.1| Pms1 protein [Danio rerio]
          Length = 372

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 159/329 (48%), Gaps = 21/329 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L  + +  + + ++I      +KELIENSLDA SS +E  +   G    ++ DNG G+
Sbjct: 2   KALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++ +   +H TSKI   +D   + T+GFRGEAL SI A+S + + ++   ++   Q 
Sbjct: 62  KATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTADDDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           ++    +I S +P  +  GT V   +LF  +P R  +    K  + E   + +++   A+
Sbjct: 122 SVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  T S  K+  ++   +S   +    +  V+G   + N +    +++  EIT+ G
Sbjct: 182 IKPELRVTLSHNKAVVWQ---KSRVSDHRTALMAVLGAASVANMLPIQHHQEQPEITIDG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-----RYPVVV 285
           +   P     + +    ++ ++F+N R V  K IL  I+  Y            RYP  +
Sbjct: 239 FFPKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFM 298

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           + + I    VDVN+ P K+ +  +N   +
Sbjct: 299 MNITIPASTVDVNLTPDKTEVMLQNKDEV 327


>gi|212530184|ref|XP_002145249.1| DNA mismatch repair protein (Pms1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210074647|gb|EEA28734.1| DNA mismatch repair protein (Pms1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 1011

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 91/449 (20%), Positives = 173/449 (38%), Gaps = 27/449 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 3   TIKPIEGRSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIEVRFKNDGLDSIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           G+  +       +H TSK++  DD +++ TFGFRGEAL S+ AVS+  +++    Q    
Sbjct: 63  GIDPQNYESIALKHYTSKLASYDDLTSLTTFGFRGEALSSLCAVSNFHIITAQAHQAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+   + VA   GT V + +LF  +P R     K+ + E   + +++   A
Sbjct: 123 NKLEFEHSGKLKGSQIVAGQKGTTVSISNLFSRLPVRRKELEKNIKRELGKVINLLNEYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNE---- 230
                V F+     S + ++   +T  N    + I+ V G   +   + L  +       
Sbjct: 183 CISTGVRFSVKNTDSKKRQLVLLTTKANASIRDNIANVYGAKTLLTLIPLELELEFEPSA 242

Query: 231 -----------ITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                      I ++GY   P     RG  ++   ++N R      I       Y     
Sbjct: 243 TGKRLNRDLNKIHVRGYVSRPVVGEGRGTRDRQMYYVNSRPCGIPQIAKAFNEVYKTY-N 301

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSS 335
           + + P V+   ++D    DVNV P K  I   +   +   + +++ +     ++ +  S 
Sbjct: 302 ISQAPFVLADFQMDTNAYDVNVSPDKRTILLHDSAALIESLKEALDQMFQDAEQTVPQSQ 361

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
               K  +   Q   P         S T         +   S    +        +  + 
Sbjct: 362 FTINKQQTDIQQRLKPSPMRAPLDRSRTEQATPTEESQTDRSEPVQVTHQHAQEDKTAEV 421

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTD 424
            +    T          I ++    ++  
Sbjct: 422 ADNENITQETTDSQVTAISEDAAADESDH 450



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 22/178 (12%)

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I E+   L + 
Sbjct: 783 DELFIIDQHASDEKYNFERLQ---AETVVQNQRLVHPKTLDLTAVEEEIIRENKLALEKN 839

Query: 484 GIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL------- 529
           G   E         G     +  +P         + L ++I  + ++ T+ T        
Sbjct: 840 GFVIEVDDSGNEPIGRRCKLV-SLPLSKEVVFDIRDLEELIVLLSEAPTSATRNATTSDT 898

Query: 530 ----QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                 ++  + A  AC  SI  G+ +   +M + +R M        C HGRPT   L
Sbjct: 899 YIPRPSKVRKMFAMRACRSSIMIGKTLTVKQMEKAVRNMGTIDKPWNCPHGRPTMRHL 956


>gi|329664144|ref|NP_001192867.1| mismatch repair endonuclease PMS2 [Bos taurus]
 gi|297490603|ref|XP_002698266.1| PREDICTED: PMS2 postmeiotic segregation increased 2 (S. cerevisiae)
           [Bos taurus]
 gi|296473094|gb|DAA15209.1| PMS2 postmeiotic segregation increased 2 [Bos taurus]
          Length = 864

 Score =  249 bits (637), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 153/345 (44%), Gaps = 27/345 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLGLSTAVKELVENSVDAGATSIDLRLKDYGVELIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHTSVKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF+T+P R   F ++ + E   +  V++   I 
Sbjct: 135 LVFDHNGKILQKTPYPRPRGTTVSVQQLFYTLPVRHKEFQRNIKKEFAKMVQVLQAYCII 194

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  + +    +  R  +   S + +  E I  V G+  + + +   +          
Sbjct: 195 SAGVRISCTNQVGQGKRQPVVCTSGSSSMKENIGLVFGQKQLQSLIPFVQLPPSDSICEE 254

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N   + G+        G +  ++ + FIN R      +   +   Y    
Sbjct: 255 YGLSCSQALHNLFCISGFVSHCAHGVGRSSTDRQFFFINRRPCDPSKVSRLVNEVYHMY- 313

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
              +YP VVL + +D   VD+NV P K  I  +   ++   +  S
Sbjct: 314 NRHQYPFVVLNVSVDSACVDINVTPDKRQILLQEEKLLLAVLKTS 358



 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 9/191 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   T +       Q +  +II++    + IVDQHA  E+  FE ++Q    T +  Q L
Sbjct: 669 EISKTMFAEMEIIGQFNLGFIITKLNADIFIVDQHATDEKYNFEMLQQH---TVLQGQRL 725

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           + P+ + L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 726 IAPQTLSLTAVNEAILIENLEIFRKNGFDFVIDEHAPVTERAKLI-SLPTSKNWTFGPQD 784

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + +++  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 785 IDELLFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTPLNTSEMKKLITHMGEMDHPWN 844

Query: 573 CNHGRPTFIKL 583
           C HGRPT   +
Sbjct: 845 CPHGRPTMRHI 855


>gi|289665669|ref|ZP_06487250.1| DNA mismatch repair protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 428

 Score =  249 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 130/426 (30%), Positives = 200/426 (46%), Gaps = 38/426 (8%)

Query: 70  MAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
           +AV RH TSKI+  DD   + T GFRGEALPSI +VS  TL SR      G  + I G +
Sbjct: 1   LAVSRHATSKIASLDDLETVATLGFRGEALPSIASVSRFTLTSRRHDAEHGFALEIDGGR 60

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
           +  V P A  PGT VEVR+LFF +PAR  FL++E+ E   I + +R +A+A P V    S
Sbjct: 61  LGEVVPRAHAPGTTVEVRELFFNVPARRKFLRAERTELGHIEEWLRSLALARPDVELRVS 120

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA 247
                  +        +    + + +GEDF   A+ ++   + + L G+   P ++R + 
Sbjct: 121 HNGKPSRRYKPGDLYSDAR--LGETLGEDFARQALRVDHSGSGLRLHGWVAQPHYSRAST 178

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
           +Q Y+++NGR+V+D+ +   ++ AY + +  GR P  VL LE+DP +VDVNVHPAK  +R
Sbjct: 179 DQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPARVDVNVHPAKHEVR 238

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSS--------------------------VLSKKM 341
           FR   +I +F+  ++Q A+       +                                 
Sbjct: 239 FREARLIHDFVYLTLQDALAHTRAGATPNSIGSDGAGYTGATAGGTGNIASGGLPSHGTA 298

Query: 342 ISSFHQDNAPKTHLPKYAT------SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
             S           P                  L+      S            +     
Sbjct: 299 PGSSGSGYNYTNWTPSQTPLGLRVDEARAAYSALYAPPPPSSAQQSAGMPSMAGTGLPAT 358

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
            E+S      LG A AQ+H  YI+++  +GL++VD HAAHER+ +E+++   +S  + +Q
Sbjct: 359 AEDS--GVPPLGYAIAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKNAHDSIGLHAQ 416

Query: 456 TLLTPE 461
            LL P 
Sbjct: 417 PLLVPM 422


>gi|224131150|ref|XP_002321013.1| predicted protein [Populus trichocarpa]
 gi|222861786|gb|EEE99328.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  249 bits (636), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 95/440 (21%), Positives = 175/440 (39%), Gaps = 10/440 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR +++  +++I AG++I   S A+KEL+ENSLDA ++ +E  +   G   FQ+ DNG 
Sbjct: 7   TIRPINKAAVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDYGLESFQVIDNGC 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++     +   +H TSK+ D  D  ++ TFGFRGEAL S+  +  LT+ +R        
Sbjct: 67  GVSPNNFKVLALKHHTSKLGDFHDLQSLTTFGFRGEALSSLCVLGDLTVETRTKNEPVAT 126

Query: 120 QIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
            +  +    +++ R  A   GT V V+ LF ++P R   F ++ + E   +  ++   A+
Sbjct: 127 HLTFNHSGLLTAERKTARQVGTTVTVKKLFSSLPVRSKEFSRNIRKEYGKLISLLNAYAL 186

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-EITLQ 234
               V    S    K+ +  +     + +  + I  V G +  +    ++   +    ++
Sbjct: 187 ISKGVRIVCSNTTGKNAKSVVLKTQGSDSLKDNIITVFGVNTFSCLEPVDIDISGSCKVE 246

Query: 235 GYTGI--PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           G+         R   ++ Y F+NGR V    +   +   Y       +YP+ ++   I  
Sbjct: 247 GFLSKSGQGSGRNLGDRQYYFVNGRPVDMPKVSKLVNELYKGANSR-QYPIAIMNFTIPT 305

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
              DVNV P K  I F + + I   + + ++K  +      S    +    +        
Sbjct: 306 TACDVNVTPDKRKIFFSDESSILLALREGLEKNYSSSNSCYSVNKFENHAKAADSSQLCS 365

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
                   S  ++      +E +    D  P            V E      +       
Sbjct: 366 PREKSNMLSKQSSANGNDSEETQTDAEDSSPLMTVEVKSKPFQVGERSIHDIEEKFMMKD 425

Query: 413 IHQNYIISQTTDGLVIVDQH 432
                   + TD L   +  
Sbjct: 426 FALRLHGIKKTDSLTNSNSC 445



 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 20/198 (10%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +       Q +  +II +    L IVDQHAA E+  FE++     ST +  Q LL P  
Sbjct: 704 DFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERL---CQSTILNQQPLLRPLR 760

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAER----FGPNAIAIREIPAILSKKNIPQLLRDIID 518
           ++L   E  +   + + + + G   E        +   ++ +P   +     + ++D+I 
Sbjct: 761 LELSPEEEVVASMNLDIIRKNGFALEEDPHALPGHHFKLKAVPFSKNITFGVEDVKDLIS 820

Query: 519 EIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
            + DS    ++               R+  + A+ AC  S+  G  +   EM ++L  + 
Sbjct: 821 TLADSQGECSIISRYKMDTADSVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLV 880

Query: 566 KNPNSSQCNHGRPTFIKL 583
              +   C HGRPT   L
Sbjct: 881 DLKSPWNCPHGRPTMRHL 898


>gi|303322639|ref|XP_003071311.1| DNA mismatch repair protein MutL family protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111013|gb|EER29166.1| DNA mismatch repair protein MutL family protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1026

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 164/430 (38%), Gaps = 32/430 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + I+QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 5   TIKAIEARSIHQIQSGQVIVDLCSVVKELVENSLDAGATSIDIRFKNNGLDLIEVQDNGH 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G+          +H TSK+S  +D S++ TFGFRGEAL S+ A+S   +++         
Sbjct: 65  GIPPNNYEGVALKHHTSKLSTFEDLSSLQTFGFRGEALSSLCALSDFHIVTAQANQAPKA 124

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+ + + VA   GT+  V  LF  +P R     K+ + E   +  ++   A
Sbjct: 125 TRLDFEVSGKLKNTQVVAGQRGTVASVEGLFQRLPVRRRELEKNIKREYGKVLGLLHAYA 184

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 185 CISTGVRFNVKNQMPKGKSVVVFATKSNPTTKENISNVYGAKTLLALIPLDLELEFEPSA 244

Query: 224 --------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                    + + N+I + GY   P F   R   ++   F+N R      I       Y 
Sbjct: 245 ESKTSRRQQDGQVNKIFVHGYISKPVFGEGRQTPDRQMFFVNSRPCGLPQIARAFNEVYR 304

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS-IQKAINKKGIS 332
               + + P +    E++    DVNV P K  I   +   +   +  S  +    +    
Sbjct: 305 SF-NISQSPFIFANFEMNTNAYDVNVSPDKRTILLHDAGALIESLKASLTKLFEGQDQTV 363

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
             S L+    S+  Q      + P  A + +N+       E  +  +  +   D  + + 
Sbjct: 364 PQSQLAVPRQSTMKQ--LVNKNAPSIAAAPSNSSPTTQRSEEAIGVDKEVQESDHEFDKQ 421

Query: 393 NDPVEESEAT 402
              +  S   
Sbjct: 422 RTSLSASPEP 431



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 36/260 (13%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            L  Y  S     E+   Q++   T   L      +++    V       + L I     
Sbjct: 720 SLKHYKASEEPISEEASEQQDSAETRLSLTVSKEDFAKM--RVVGQFNLGFILAIRPGTD 777

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
             ++  + T D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I
Sbjct: 778 STDFQDNPTKDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVRPKTLDLTAVEEEVI 834

Query: 474 MEHDEDLHRLGIKA-------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
           +++   L + G          E  G     I  +P         + L ++I  + +S   
Sbjct: 835 IDNIPTLEKNGFIVDIDTSGDEPIGRRCKLI-SLPLSKEVVFNTRDLEELIVLLSESPQH 893

Query: 527 Y-----------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           +                           ++  + A  AC  SI  G+ +   +M R++R 
Sbjct: 894 HRASQDDGDVDPASSSSQFTNLYVPRPGKVRKMFAMRACRSSIMIGKSLTVKQMERVVRH 953

Query: 564 MEKNPNSSQCNHGRPTFIKL 583
           M        C HGRPT   L
Sbjct: 954 MGMIDKPWNCPHGRPTMRHL 973


>gi|242065626|ref|XP_002454102.1| hypothetical protein SORBIDRAFT_04g024570 [Sorghum bicolor]
 gi|241933933|gb|EES07078.1| hypothetical protein SORBIDRAFT_04g024570 [Sorghum bicolor]
          Length = 780

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 165/341 (48%), Gaps = 10/341 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +S+ ++++I +G++I   S A+KEL+ENSLDA ++ VE  +   G+ +F++ DNG G
Sbjct: 19  IKPISKAVVHRICSGQVIFDLSSAVKELVENSLDAGATSVEVSLKAYGEEWFKVVDNGCG 78

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++         +H TSKISD  D  ++ TFGFRGEAL S+ A+  LT+ +R         
Sbjct: 79  ISPSNFQALALKHHTSKISDFSDLGSVVTFGFRGEALSSLCALGKLTVETRSKDEPVATH 138

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       + S R  A   GT V V  LF T+P R   F ++ + E   +  ++   A+ 
Sbjct: 139 LEFEHSGVVVSERKTARQVGTTVTVEKLFSTLPVRSKEFSRNIRKEYGKVISLLNAYALI 198

Query: 179 YPKVS--FTFSTIKSNRYKMNFQSTNGNFPERISQVIGED-FINNAVELNEKSNEITLQG 235
              V    T +  K+++  +     + +  + I  V G + F          S+   ++G
Sbjct: 199 AKGVRLLCTNTVGKNSKMVVLRTQGSSSMKDNIITVFGPNTFKCLEPFSVTTSDGCQIEG 258

Query: 236 YTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +   P    G +  ++ + ++NGR +    +   +     ++    +YPVV+L   I   
Sbjct: 259 FLSKPGPGTGRSSGDRQFFYVNGRPIDMPKVTKLVNE-LYKSSNAKQYPVVILDFRIPTT 317

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
             DVNV P K  + F + ++I   + ++++   +    S S
Sbjct: 318 SYDVNVAPDKRKVFFSSESLILQSLREAVENLYSPLQCSFS 358



 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 5/151 (3%)

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
            +T S + +     F    AP  +      + +   +             ++      Y 
Sbjct: 634 HTTESDVDEHRGRCFSASGAPNKYSESRHQNAS--ADSPLPDAQDYDDGAVVCYAPVQYP 691

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                V E         +   Q +  +II +    L IVDQHAA E+  FE +     ST
Sbjct: 692 IIQFTVAELRRRRKNGYMVVGQFNLGFIIGKLDQDLFIVDQHAADEKYNFECL---SQST 748

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
            +  Q LL P  +DL   E  ++  +   + 
Sbjct: 749 TLNIQPLLQPLRLDLSPEEEVIVSMNMSTIR 779


>gi|73989708|ref|XP_859237.1| PREDICTED: similar to MutL protein homolog 1 isoform 4 [Canis
           familiaris]
          Length = 724

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 158/374 (42%), Gaps = 36/374 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +                                AL SI  V+H+T+ ++  +     +  
Sbjct: 68  IR-------------------------------ALASISHVAHVTITTKTAEAKCAYRAT 96

Query: 123 ISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I    
Sbjct: 97  YSDGKLKAPPKPCAGNQGTQITVEDLFYNISTRRKALKNPSEEYGKILEVVGRYSIHNSG 156

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYTGI 239
           +SF+          +     N    + I  + G       +E+  +       + GY   
Sbjct: 157 ISFSVKKQGETVADVRTLP-NATTVDNIRSIFGNAVSRELIEVGCEDKTLAFKMNGYISN 215

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDVNV
Sbjct: 216 ANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNV 274

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP K  + F +   I   + Q I+  +     S        +                  
Sbjct: 275 HPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEVVKSTTGAT 334

Query: 360 TSLTNTQEKLFLQE 373
            S T + +K++  +
Sbjct: 335 PSSTGSGDKVYAHQ 348


>gi|225684832|gb|EEH23116.1| DNA mismatch repair protein PMS1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 1105

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/523 (20%), Positives = 193/523 (36%), Gaps = 48/523 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 41  TIKAIEARSVHQIQSGQVIIDLCSVVKELVENSLDAGATSIDIRFKNNGLDLIEVQDNGK 100

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTL-MSRPPQNNTG 118
           G++ ++      +H TSK+S  DD S++ +FGFRGEAL S+ A+S+  +  S+  Q    
Sbjct: 101 GISPDDYETVALKHYTSKLSKLDDLSSLQSFGFRGEALSSLCALSNFHIVTSQAHQAPKA 160

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           +++      K+   + VA   GT   V +LF  +P R     K+ + E   +  ++   A
Sbjct: 161 SKLEFEISGKLKDTQVVAGQRGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYA 220

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F      S    +   +T  N    E IS + G   +     L+         
Sbjct: 221 CVSTGVRFNVKNQMSKGKNVLVFATKSNATTKENISNIYGAKTLLALTPLDLELEFQPSA 280

Query: 226 ----------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                     +++N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 281 TNGKSIRGGIQEANKIFIQGHISKPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYK 340

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  S+ +   ++  + 
Sbjct: 341 SF-NILQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGTLIESLKTSLTELFERQDQTV 399

Query: 334 SSVLSKKMISSFHQDNAPKTH--LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              L     S+ H+ +   T   L     + +N  ++ + Q+           +      
Sbjct: 400 PQSLIPGKQSTLHRPSGKDTASVLASTKPAESNRAKQSYKQDGGEDEERDEEGEQRAMRT 459

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
                 E              + +     Q  DG+        H     +  R D  + +
Sbjct: 460 FVQRFTERSK----------TLPEIPETQQNEDGMESRQLTEDHSATNEDARRVDLATQE 509

Query: 452 IT-------SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
            T           +      L     A   E  ++   LG   
Sbjct: 510 ATEIAPSQYPTREIKGSRPSLSTPPTAPSDEQADEQINLGFTL 552



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 31/195 (15%)

Query: 421  QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
               D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++   L
Sbjct: 874  HKDDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKTLDLTAVEEEIIIDNLPAL 930

Query: 481  HRLGI--KAERFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT------ 528
             + G   + +R G   I     +  +P         + L ++I  + +S    +      
Sbjct: 931  EKNGFIVEVDRSGDEPIGRRCKLTSLPLSKEVVFNIRDLEELIVLLGESPQAQSAPSPSS 990

Query: 529  ---------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
                              ++  + A  AC  SI  G+ + + +M +++R M        C
Sbjct: 991  FSTLSSSPLTSKYVPRPSKVRKMFAMRACRSSIMIGKSLTAKQMGKVVRHMGMIDKPWNC 1050

Query: 574  NHGRPTFIKL-KLSD 587
             HGRPT   L  L +
Sbjct: 1051 PHGRPTMRHLMSLGE 1065


>gi|224006522|ref|XP_002292221.1| mlh1-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220971863|gb|EED90196.1| mlh1-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 749

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 183/425 (43%), Gaps = 26/425 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L ++++++IAAGE+++RP   +KEL+ENSLDA+ ++++     GG     ITDNG 
Sbjct: 3   KIRPLPKEVVDRIAAGEVVQRPVSVVKELLENSLDADGTQIDIQCQKGGLESITITDNGT 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++   +P+A  R  TSK+   DD  +I TFGFRGEAL S   V  + +      NN   
Sbjct: 63  GISPTSLPLACTRFATSKLVTVDDLKSIRTFGFRGEALASASMVGRVCISKTLQNNNCAF 122

Query: 120 QIAISGEKIS---------------SVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSE 161
           ++       +                 +P A   GT + V+DLF+ IP+R   +   +SE
Sbjct: 123 KMHYRDGNPTSDPKLPTNKNSTATIKPKPSAGKEGTTITVQDLFYNIPSRRRAMEGRRSE 182

Query: 162 QVETNLITDVIRRMAIAYPKV-SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           + E + I + ++R A+   K                   +      + I  + G      
Sbjct: 183 RDEYDRILNCVQRYAVHEAKRGVGFVCRGGGGGGGGKGAAGRATTKDVIGHIFGTAVSRE 242

Query: 221 AVELNEKSNEITL--QGYTGIPTFNRGNAN-QFYVFINGRTVQDKFILSTIRTAYAETIP 277
            + LN    ++     G     +++   ++  F +FIN R V+   +   + + Y++ +P
Sbjct: 243 LLPLNAGEGDVEAVTTGLITNGSYSAPKSSAAFLLFINDRLVESASLRRAVESIYSDALP 302

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
            G  P V L LE+    VDVNVHP K  + F +   +   +  ++++ I     ++S   
Sbjct: 303 KGGKPFVYLSLELPGPHVDVNVHPTKREVAFLHEDRLCVALAAAVKEVIGS--ATSSRTF 360

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           +     +       +  +          +E L +      T ++  SD     +     E
Sbjct: 361 AVAASGALLAPEEKRVRVQPKKAIAMGEREGLVVSTASNVTTEIGESDSGAVDDAMAVDE 420

Query: 398 ESEAT 402
                
Sbjct: 421 PEPQQ 425


>gi|328793875|ref|XP_003251937.1| PREDICTED: mismatch repair endonuclease PMS2-like, partial [Apis
           mellifera]
          Length = 599

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 118/596 (19%), Positives = 232/596 (38%), Gaps = 82/596 (13%)

Query: 65  SEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            ++      +H TSK+ +  D + ++TFGFRGEAL S+ +++ L++++R   +  G ++ 
Sbjct: 2   EQDFEGLGLKHHTSKLQEFSDLTEVNTFGFRGEALSSLCSLAELSIITRHCTSEYGFKLQ 61

Query: 123 ISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYP 180
                +     P A   GT V V+++F  +P R   F ++ + E      ++    +   
Sbjct: 62  FDHNGLLQKKEPCAREIGTTVHVKNIFKCLPVRVKEFQRNLKKEYIRAIQILYSYCLIST 121

Query: 181 KVSFTFST-----------------IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE 223
           +   T +                     N   + F   + N   +I  +  ++       
Sbjct: 122 ETKITCTNSVSGKASNLVVNTVNSSNILNNINIIFGKKSSNGLIKIELLPPDELTLQEYN 181

Query: 224 LNEKSN-EITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           L      +     Y         R  +++ + +INGR      I   I   Y +     +
Sbjct: 182 LPNNIIVDFEWDCYISSCEHDVGRFTSDRQFFYINGRPCDLIKINKLINQIYHKY-NNKQ 240

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI-------QKAINKKGIST 333
           YP + L L+++    D+NV P K  I      +I   +  S+       Q  +    +S 
Sbjct: 241 YPFIFLNLKLNKYSTDINVTPNKRTIFCTQQNLILATLKYSLISKWDKLQGNLTINPLSK 300

Query: 334 SSVLSKKMISSFHQDNAPK--------THLPKYATSLTNT-------------------- 365
            +   K+ IS  ++D + K        + + +Y  S  N                     
Sbjct: 301 LNFGIKRTISPTNEDRSIKRLHKLNEISDINQYDNSQNNISYDMKILNSIEMPISILTIK 360

Query: 366 ---QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIACAQIHQNY 417
              QEK  +    +++N  +       + +N   E           +       Q +  +
Sbjct: 361 QKLQEKQNILPKYVTSNTTIKFKAKMEANENSKAENELKTQLTKDSFFKMEIIGQFNLGF 420

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II++  + L I+DQHA+ E+  FEK+    N T++ +Q L+ P+ +++      +++EH 
Sbjct: 421 IITRLKEDLFIIDQHASDEKYRFEKL---NNETQLKTQKLIIPKFLNISAVNETILIEHQ 477

Query: 478 EDLHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---- 528
           +     G   +      FG   I +  IP     +   + + ++I  I +          
Sbjct: 478 KTFEDNGFFFKINSKAEFGHR-IQLTGIPVSGYWQFGQEDIEELIFLIREGGVENKEKNI 536

Query: 529 -LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               R+  +LA+ AC G++  G+ + + +M +L+ +M +  N   C HGRPT   L
Sbjct: 537 FRPSRVRQMLASRACRGAVMIGKALNNSDMQKLIAQMAQMKNPWSCPHGRPTIRHL 592


>gi|328866647|gb|EGG15030.1| MutL DNA mismatch repair protein [Dictyostelium fasciculatum]
          Length = 996

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/355 (23%), Positives = 159/355 (44%), Gaps = 30/355 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + +  ++QI +G++I   S A+KEL+ENSLDA++++VE  +   G+   ++ DNG G
Sbjct: 37  IKAIDKDSVHQICSGQVILDLSTAVKELVENSLDAKATKVEIRLKEYGEDAIEVIDNGSG 96

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + +        ++ TSK+S   D  ++ +FGFRGEAL S+ A++++++ +R        +
Sbjct: 97  VEAANYVALTLKYYTSKLSKFSDLESVTSFGFRGEALSSLCALANVSITTRHSSAKVAHK 156

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIA 178
           I       I+S    A   GT V +  LF  +P R    K + + E   +  +++  A+ 
Sbjct: 157 IVYDQSGVITSQTECAREVGTTVTLTSLFKRLPVRYQEFKRNLKKEYAKLQTILQSYAVI 216

Query: 179 YPKVSFTFSTIKSNRYKMNF-QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
              V  +      N  ++ F  S   +  + +  + G+        ++ ++    ++G  
Sbjct: 217 STGVRISCYNTVKNSRQLVFSTSGCNDIKDNVVSLFGKQ-AQMLDRIDVENELFHVKGLV 275

Query: 238 GI------------------------PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                                         R   ++ ++FINGR V    +  T+ + Y 
Sbjct: 276 SKVGQLNGVGSVVGSQTAAGGNGGLNAQMARSCGDRQFIFINGRPVDFPALTKTVNSMYH 335

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                G YPV+ L ++++P   DVNV P K  +  +   I+   I   ++    K
Sbjct: 336 SFQKKGSYPVLFLDIKMNPNTYDVNVTPDKRKVFIQKEEILLTLIGDHLKSHWEK 390



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 15/248 (6%)

Query: 346 HQDNAPKTHLPKYATSLTN----TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
            Q  AP        +S  N    +    F  ++  +T       D    E +  +++   
Sbjct: 727 EQQPAPTQSQGSDPSSSQNKTFLSSVGAFTAKSNRNTQQTTMDKDVAEKELSLHIKKE-- 784

Query: 402 THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
             +       Q + ++II++    L IVDQHAA E+  +E ++    S ++ SQ L+ P 
Sbjct: 785 -DFLRMQVIGQFNNSFIIARLDTDLFIVDQHAADEKYNYETLQ---KSHELISQPLIRPT 840

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQLLRDII 517
            I L + +  ++++H +   + G   +          + I  +P        P  + ++I
Sbjct: 841 HIQLTDEDEEILIDHLDLFKKNGFIFDVNRNAPPTKRVKIVSLPFSRKWTFGPNDIYELI 900

Query: 518 DEIIDS-STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
             I +S         RI  + A+ AC  SI  G  +   +M ++L  + +  N   C HG
Sbjct: 901 FMIKESLPGQVCRLPRISAMFASRACKKSIVVGMPLTHEQMRKVLSNLSQLENPWCCPHG 960

Query: 577 RPTFIKLK 584
           RPT   L 
Sbjct: 961 RPTMRHLN 968


>gi|327265366|ref|XP_003217479.1| PREDICTED: PMS1 protein homolog 1-like [Anolis carolinensis]
          Length = 943

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/331 (26%), Positives = 155/331 (46%), Gaps = 19/331 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L  + +  +++ ++I      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAETVRILSSSQVITSVVSVVKELIENSLDANATNVDVKLENYGFDKIEVRDNGDGI 61

Query: 64  TSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++P+   +H TSKIS   D  ++ ++GFRGEAL SI + S + + ++    +   Q 
Sbjct: 62  RAADVPVMAVKHYTSKISSSQDLESLTSYGFRGEALASICSTSEVLITTKTANEDFSTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           A+     I S +P  +  GT V V  LF  +P R  F    K  + E   I  ++    I
Sbjct: 122 ALDRSGHIISQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTDKKCKEEMKKIQKLLMAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT--LQG 235
             P++   F+  K+  ++   ++   +       V+G   ++N V       +I     G
Sbjct: 182 IKPELRIMFTHNKTVMWQ---KTRALDHKTAFMAVVGAAIMDNMVSFQRHCKDIEVLFSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAY---AETIPLGRYPVVVLL 287
           +   P       +  ++ + ++F+N R V  K IL  ++  Y    +      YPV ++ 
Sbjct: 239 FLPKPDSGGGLTSHPSSERSFIFVNNRPVYLKEILKLVQQYYKLKFQMDSNRSYPVFLIN 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           + I P  VDVN+ P KS +   N   I   I
Sbjct: 299 IIIPPSAVDVNLTPDKSQVLLHNQESICLAI 329


>gi|71001986|ref|XP_755674.1| DNA mismatch repair protein (Pms1) [Aspergillus fumigatus Af293]
 gi|66853312|gb|EAL93636.1| DNA mismatch repair protein (Pms1), putative [Aspergillus fumigatus
           Af293]
 gi|159129732|gb|EDP54846.1| DNA mismatch repair protein (Pms1), putative [Aspergillus fumigatus
           A1163]
          Length = 1044

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 30/377 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIEVRFKNNGLDSIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ E       +H TSK+S  +D S +HTFGFRGEAL S+ A++   +++         
Sbjct: 63  GISPENYENVALKHYTSKLSSYEDLSRLHTFGFRGEALSSLCALADFRIVTAQANQAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+S  + VA   GT   V  LF  +P R     K+ + E   + +++   A
Sbjct: 123 TKLEFETSGKLSKTQIVAGQKGTTASVEGLFKKLPVRRRELEKNIKREYGKVLNLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVE----------- 223
                V F+          +   STNGN    E I+ V G   +   +            
Sbjct: 183 CISTGVRFSVRNTVGKNRNVMVFSTNGNQTTKENIANVYGAKTLLALIPLDLTLEFEPSA 242

Query: 224 -----LNEKSNEITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                   + + I ++G+   P F   R   ++   F+N R      I       Y    
Sbjct: 243 AGRRTAEGELHTIQVKGHISRPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 301

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            + + P V   L +D    DVNV P K  I   +   + + +    ++++ +   +T   
Sbjct: 302 NVSQSPFVFADLHMDTNAYDVNVSPDKRTILLHDAGALIDSL----KQSLTEMFEATDQT 357

Query: 337 LSKKMISSFHQDNAPKT 353
           +    I+ + Q    + 
Sbjct: 358 VPLSQIADYKQSGPKQQ 374



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 95/256 (37%), Gaps = 30/256 (11%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
            LPK  + +   Q  L      +  +    +   T + +           +       Q 
Sbjct: 733 SLPKIESQMKKVQHSLRSYRKDVDNSQEDTAAAATVTAEERLSLTVTKDDFARMRIIGQF 792

Query: 414 HQNYIISQTT---------DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
           +  +I++            D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +D
Sbjct: 793 NLGFILATRPSEDGSADSKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQPKRLD 849

Query: 465 LLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L   E  +++E+   L + G   E         G     I  +P         + L ++I
Sbjct: 850 LTAVEEEIVIENRAALEKNGFVVEVDDSGNEPIGQRCKLI-SLPLSKEVVFGVRDLEELI 908

Query: 518 DEIIDSSTTYTL----------QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             + +   T +             ++  + A  AC  SI  G+ +   +M R++R M   
Sbjct: 909 VLLSEMPATDSRGSAMQTHIPRPSKVRKMFAMRACRSSIMIGKSLTQTQMVRVVRNMGTI 968

Query: 568 PNSSQCNHGRPTFIKL 583
                C HGRPT   L
Sbjct: 969 DKPWNCPHGRPTMRHL 984


>gi|295675041|ref|XP_002798066.1| DNA mismatch repair protein pms1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280716|gb|EEH36282.1| DNA mismatch repair protein pms1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 1067

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 103/521 (19%), Positives = 190/521 (36%), Gaps = 44/521 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIDIRFKNNGLDLIEVQDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           G++ ++      +H TSK+S  DD S++ +FGFRGEAL S+ A+S+  +++    Q    
Sbjct: 63  GISPDDYETVALKHYTSKLSKLDDLSSLQSFGFRGEALSSLCALSNFHIVTAQAHQAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           +++      K+   + VA   GT   V +LF  +P R     K+ + E   +  ++   A
Sbjct: 123 SKLEFEISGKLKDTQVVAGQRGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F           +   +T  N    E IS + G   +     L+         
Sbjct: 183 CVSTGVRFNVKNQMLKGKNVLVFATKSNATTKENISNIYGAKTLLALTPLDLELEFQPSA 242

Query: 226 ----------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                     +++N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 243 TNGKSIRGGIQEANKIFIQGHISKPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYK 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  ++ +   ++  + 
Sbjct: 303 SF-NISQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGTLIESLKTTLTELFERQDQTV 361

Query: 334 SSVLSKKMISSFHQDNAPKTH--LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
              L     S+ H+ +   T   L     + +N  ++ + Q            +      
Sbjct: 362 PQSLIPGKQSTLHRPSGKDTASVLASTKPAESNRAKQSYEQAEGEDEERDEEGEQTAMRT 421

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYI-ISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
                 E   T  ++        +           +   D                  +T
Sbjct: 422 FVQRFTERSKTLPEIPETQQNEDRMESRQLTEGHSVTNEDTRRVD--------LATQEAT 473

Query: 451 KITSQTLLTPEI----IDLLEGECALIMEHDEDLHRLGIKA 487
           +IT     T E       L     A   E  E+   LG   
Sbjct: 474 EITLSQYPTRENKGSRPTLSTPATAPSDEQAEEQINLGFTL 514



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 31/195 (15%)

Query: 421  QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
               D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++   L
Sbjct: 836  HKDDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKTLDLTAVEEEIIIDNLPAL 892

Query: 481  HRLGI--KAERFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT------ 528
             + G   + +R G   I     +  +P         + L ++I  + +S    +      
Sbjct: 893  EKNGFIVEVDRSGDEPIGRRCKLTSLPLSKEVVFNIRDLEELIVLLGESPQAQSARSPSS 952

Query: 529  ---------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
                              ++  + A  AC  SI  G+ + + +M +++R M        C
Sbjct: 953  FSTLSSSPLTSKYVPRPSKVRKMFAMRACRSSIMIGKSLTAKQMGKVVRHMGMIDKPWNC 1012

Query: 574  NHGRPTFIKL-KLSD 587
             HGRPT   L  L +
Sbjct: 1013 PHGRPTMRHLMSLGE 1027


>gi|89269512|emb|CAJ83360.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)
           [Xenopus (Silurana) tropicalis]
          Length = 205

 Score =  247 bits (630), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 3/198 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++  +  GG    QI DNG G
Sbjct: 5   IRRLEETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVTVKDGGMKLIQIQDNGTG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D SNI T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 65  IRKEDLDIVCERFTTSKLQSFEDLSNISTYGFRGEALASISHVAHVTITTKTADGKCAYR 124

Query: 121 IAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            + +  K+    +P A N GT + V DLF+ I  R   LKS   E   I +V+ R AI  
Sbjct: 125 ASYADGKLKTPPKPCAGNQGTQISVEDLFYNISTRRKALKSPSEEHARIVEVVSRYAIHN 184

Query: 180 PKVSFTFSTIKSNRYKMN 197
             +SF+          + 
Sbjct: 185 SGISFSVKKQGETMADVR 202


>gi|310792029|gb|EFQ27556.1| DNA mismatch repair protein MutL [Glomerella graminicola M1.001]
          Length = 1060

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 92/420 (21%), Positives = 165/420 (39%), Gaps = 31/420 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENS+DA +S ++      G    ++ DNG 
Sbjct: 3   TIKPIEGRTVHQIQSGQVIVDLCSVVKELVENSIDAGASSIDVRFKNQGLDSIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR-PPQNNTG 118
           G++ +       +H TSK+S   D   + TFGFRGEAL S+ A+S  ++++        G
Sbjct: 63  GISPDNYETVALKHYTSKLSTYSDLGTLQTFGFRGEALSSLSALSQFSIVTCMDKDVPKG 122

Query: 119 AQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            +    S  K+     VA   GT V V +LF  +P R     ++ + E N +  ++ + A
Sbjct: 123 TKLDFESSGKLKETHVVAAQKGTNVIVENLFHNLPVRRRELQRNIKREWNKVIALLNQYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK------- 227
                V F+ S   +   ++   ST GN    E +  + G   +   V L+ +       
Sbjct: 183 CIQTGVKFSVSQQPTKGKRIVLFSTKGNPTTRENLVNIFGAKTMTVLVPLDLELGFEPTS 242

Query: 228 -------------SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAY 272
                        S E+ +QGY   P     R   ++   F+NGR              Y
Sbjct: 243 GPALKSAVKDNQVSTEVRVQGYVSRPAHGEGRQTPDRQMFFVNGRPCGLPQFAKVFNEVY 302

Query: 273 AETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
                  + P +   +++D    DVNV P K  I   + + +   + +++          
Sbjct: 303 KAY-NASQSPFIFADIQLDTHLYDVNVSPDKRTIMLHDQSRMLESLKEALASLFQSHDYP 361

Query: 333 -TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
             ++  S +           + ++P              L +   S  D    D P   +
Sbjct: 362 VPAAQQSTQKAQPSRIVAVAQNNIPDNEKGGRKPAASSTLHDGFSSEYDSEDDDQPFPRD 421



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 14/172 (8%)

Query: 424  DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            D L I+DQHA+ E+  FE+++     T + SQ L+ P+ ++L   E  ++ME+   L   
Sbjct: 867  DELFIIDQHASDEKYNFERLQST---TVVQSQRLVHPKQLELTALEEEIVMENISALDVN 923

Query: 484  GIKAERFGPNA------IAIREIP----AILSKKNIPQLLRDIIDE-IIDSSTTYTLQDR 532
            G K       +        +  +P       +  ++ +L+  + D  + ++ ++     +
Sbjct: 924  GFKVSVDSSGSQPVGSRCKLLALPLSRETTFTLSDLEELISLLGDHHLTEARSSAPRPSK 983

Query: 533  IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            + ++ A  AC  S+  G+ +   +M +L+R M +      C HGRPT   L 
Sbjct: 984  VRSMFAMRACRSSVMIGKALAQKQMEKLIRHMGELDKPWNCPHGRPTMRHLS 1035


>gi|311302932|gb|ADP89040.1| MLH1-like protein 1 [Trichomonas vaginalis]
          Length = 779

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 6/308 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           PS   KEL+ENS+DA S R+ T +  GG S  +I+DNG G+ + ++P+A QRH TSKI  
Sbjct: 4   PSNVAKELLENSIDAGSKRISTELQNGGYSLIKISDNGCGINAADMPLACQRHATSKIQS 63

Query: 83  --DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-IAISGEKISSVRPVAMNPG 139
             D  N+ TFGFRGEAL S+  VSHL+++S+  +++ G       G  I  +  V +  G
Sbjct: 64  FNDLRNVTTFGFRGEALFSMSCVSHLSILSKTEESSFGYSGNFQDGNLIGELSTVPITIG 123

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           T V + DLF+  P +L        +   I  +++R AIAYP++SF+       +   +  
Sbjct: 124 TTVTISDLFYNKPTKLRTSPDSATQNRKILQIVQRYAIAYPEISFSVICDGKEKMMTHGS 183

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           S++ +    +  +         V   + +   T++ Y G P+  +       VF+NGR V
Sbjct: 184 SSHYDVISLLYGIDAR--SATFVLTGDIAKNTTVEMYLGSPSAKKQLKES-AVFVNGRLV 240

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           Q   I   I   Y   +  G  P   +LL + P +VDVNVHP K  + F N   + + I 
Sbjct: 241 QCDHIKRAINAVYGSFLMRGEKPFAFVLLRMPPDKVDVNVHPTKKDVIFTNEQSLIDNIC 300

Query: 320 QSIQKAIN 327
             I   + 
Sbjct: 301 DIILAELK 308


>gi|53133740|emb|CAG32199.1| hypothetical protein RCJMB04_19o6 [Gallus gallus]
          Length = 871

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 175/467 (37%), Gaps = 37/467 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+++  + +++I +G+++     A+KEL+ENSLDA ++ ++  +   G    +++DNG 
Sbjct: 13  TIKRIDRESVHRICSGQVVLSLGTAVKELVENSLDAGATNIDVRLKDHGAELIEVSDNGG 72

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E       +H TSKI D  D  ++ TFGFRGEAL S+ A+S +T+ +       G 
Sbjct: 73  GVEEENFEGLTLKHYTSKIQDFSDLIHVETFGFRGEALSSLCALSDVTISTCHKSAKVGT 132

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR---------LNFLKSEQVETNLIT 169
           ++      KI+   P     GT V ++ LF T+P R             K+        T
Sbjct: 133 RLVFDHNGKITQKAPYPRQQGTTVSIQQLFHTLPVRHKEFQRNIKKGICKNGSRYLAKHT 192

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
            + ++          T    +  +  +   +   N  E I  V G+  + + +   +   
Sbjct: 193 VLFQQGVRIN----CTNQVGQGKKSPVVSTTGGPNLKENIGAVFGKKQLQSLIPFVQLPP 248

Query: 230 E------------------ITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIR 269
                               ++ G+        G +  ++ + FIN R      ++  + 
Sbjct: 249 NEAVCEEYGLKSTDLPEKLYSITGFISRCDHGVGRSTTDRQFFFINQRPCDPAKVVKLVN 308

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y       +YP +VL + +D   VD+NV P K  I  +   ++   +  S+ +     
Sbjct: 309 EVYH-LYNKHQYPFIVLNICVDSECVDINVTPDKRQILLQEEKLLLAILKTSLIEMFGSD 367

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
               +   +   I    +        P    S  +  E    +  R+ T   L      +
Sbjct: 368 VNKLNVNQNLLDIVGNVKAPPGDAEKPWVEMSHHSETENPSSEGKRVMTLSRLRESFSLH 427

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
             ++      +            +       +T   ++  D  + HE
Sbjct: 428 QTESYFQSPKKVKQRHSSSKQLSLDTILSTVRTQKAVLSEDSESCHE 474



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLGIACAQIH 414
           +L     K+  Q+ + +            S   + V E E         +        + 
Sbjct: 633 ALAERLRKIVQQQQKCTETQNYRRFRAKISPGENKVAEDELRKEISKEMFAKMEIHWPVQ 692

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
                SQ    L I+DQHA  E+  FE ++Q    T +  Q L+ P+ ++L      +++
Sbjct: 693 LRVYNSQVESDLFIIDQHATDEKYNFEMLQQH---TVLQGQKLIAPQNLNLTAVNETVLI 749

Query: 475 EHDEDLHRLGIKAERFGPNA-----IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G        NA     + +  +P   +    PQ + ++I  + D       
Sbjct: 750 ENLEIFRKNGFDF-VINENAPVTQRVKLISLPTSKNWTFGPQDIDELIFMLSDCPGVMCR 808

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
             R+  + A+ AC  S+  G  +   EM +L+  M +  +   C HGRPT   +   D+
Sbjct: 809 PSRVRQMFASRACRKSVMIGTALNVQEMKKLVTHMGEIEHPWNCPHGRPTMRHIASLDL 867


>gi|311302924|gb|ADP89036.1| MLH1-like protein 1 [Trichomonas vaginalis]
 gi|311302928|gb|ADP89038.1| MLH1-like protein 1 [Trichomonas vaginalis]
          Length = 779

 Score =  246 bits (629), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 101/308 (32%), Positives = 155/308 (50%), Gaps = 6/308 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           PS   KEL+ENS+DA S R+ T +  GG S  +I+DNG G+ + ++P+A QRH TSKI  
Sbjct: 4   PSNVAKELLENSIDAGSKRISTELQNGGYSLIKISDNGCGINAADMPLACQRHATSKIQS 63

Query: 83  --DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-IAISGEKISSVRPVAMNPG 139
             D  N+ TFGFRGEAL S+  VSHL+++S+  +++ G       G  I  +  V +  G
Sbjct: 64  FNDLRNVTTFGFRGEALFSMSCVSHLSILSKTEESSFGYSGNFQDGNLIGELSTVPITIG 123

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           T V + DLF+  P +L        +   I  +++R AIAYP++SF+       +   +  
Sbjct: 124 TTVTISDLFYNKPTKLRTSPDSATQNRKILQIVQRYAIAYPEISFSVICDGKEKMMTHGS 183

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           S++ +    +  +         V   + +   T++ Y G P+  +       VF+NGR V
Sbjct: 184 SSHYDVISLLYGIDAR--SATFVLTGDIAKNTTVEMYLGSPSAKKQLKES-AVFVNGRLV 240

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           Q   I   I   Y   +  G  P   +LL + P +VDVNVHP K  + F N   + + I 
Sbjct: 241 QCDHIKRAINAVYGSFLMRGEKPFAFVLLRMPPDKVDVNVHPTKKDVIFTNEQSLIDNIC 300

Query: 320 QSIQKAIN 327
             I   + 
Sbjct: 301 DIILAELK 308


>gi|156095127|ref|XP_001613599.1| DNA mismatch repair protein PMS2 [Plasmodium vivax SaI-1]
 gi|148802473|gb|EDL43872.1| DNA mismatch repair protein PMS2, putative [Plasmodium vivax]
          Length = 1264

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 92/382 (24%), Positives = 173/382 (45%), Gaps = 16/382 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIR + E+ I+ I + ++I   S  +KEL+ENS+DA+++ ++  +   G    Q+ DNG
Sbjct: 1   MKIRNIGEESIHNICSSQVIFTLSSVVKELVENSIDADATEIKIKLVENGIKLIQVNDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKI+  +D   +++T GFRGEAL S+  +S L ++++  +++ 
Sbjct: 61  AGIKKSNFENVCARHATSKITEFEDIHSSLNTLGFRGEALNSLCMLSDLHIVTKHEESSH 120

Query: 118 GAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
           G  +      ++S   P+A   GT V   ++F  IP R     K+ + + + +  ++++ 
Sbjct: 121 GYMLTFDNLGRLSHEEPIARLRGTTVSCENIFKNIPIRKKDFIKNIKSQLSDLLLLMQQY 180

Query: 176 AIAYPKVSFTFST------IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           AI Y KV F+            N   +     N    + +  + G+  I N ++ N  + 
Sbjct: 181 AIIYCKVKFSIQNVITVKGNVKNINLLLTNGGNETVKKSVHTIYGKKNIGNLIDFNIDAE 240

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
           E  L+ Y       R + +  + +IN R +     ++ I  +         YP+++  + 
Sbjct: 241 EWKLRAYISDSNSGRRDRDIQFYYINSRPIHVLKNVNKIINSIYREFNSRLYPIIICNIL 300

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
            + +  D+NV P K  + F     +   I    + A+ K     +S L    I  +    
Sbjct: 301 SETKNFDINVTPDKREVFFIYENELCERI----KTALVKLLTPQTSQLVDTHIGDYF-LK 355

Query: 350 APKTHLPKYATSLTNTQEKLFL 371
           A    LP +  ++   +E  F 
Sbjct: 356 ANNIRLPAFGRAICTREEATFA 377



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 71/223 (31%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
            L I+DQHAA E+  FEK  + F    + SQ L++   ++L   +  +I ++ E     G 
Sbjct: 983  LFIIDQHAADEKSNFEKYNKVFT---MKSQRLISKIDLELSPAQIYVIEKNLEVFLHNGF 1039

Query: 486  KAERF------------------------------------GPNAIA-----IREIPAIL 504
              E                                      G  A+      +  +P   
Sbjct: 1040 DVEIVEEPLRKRRRGGAADGSGEADGSGQANVEDALTAAAAGEGALVQVKVYLLSLPVFN 1099

Query: 505  SKKNIPQLLRDIIDEIIDSSTTYT---------------------------LQDRIENIL 537
             K    +    ++  + +   TY                               R+  IL
Sbjct: 1100 GKILEVEDFMSLLHHLTEHPITYDKASFQMFIRNKGQPNKQTDTWFNYNFPRPQRVWRIL 1159

Query: 538  ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            A+ AC  ++  G+ +   EM ++ +++    N   C HGRPT 
Sbjct: 1160 ASKACRNAVMVGKALNVAEMIKIKKKLSVLKNPWNCPHGRPTI 1202


>gi|114585964|ref|XP_001170194.1| PREDICTED: MutL protein homolog 1 isoform 1 [Pan troglodytes]
          Length = 723

 Score =  246 bits (628), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 147/327 (44%), Gaps = 36/327 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ ++  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +                                AL SI  V+H+T+ ++        + +
Sbjct: 68  IR-------------------------------ALASISHVAHVTITTKTADGKCAYRAS 96

Query: 123 ISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            S  K+    +P A N GT + V DLF+ I  R   LK+   E   I +V+ R +I    
Sbjct: 97  YSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSIHNAG 156

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYTGI 239
           +SF+          +          + I  + G       +E+  +       + GY   
Sbjct: 157 ISFSVKKQGETVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISN 215

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
             ++        +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDVNV
Sbjct: 216 ANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNV 274

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           HP K  + F +   I   + Q I+  +
Sbjct: 275 HPTKHEVHFLHEESILERVQQHIESKL 301


>gi|255081839|ref|XP_002508138.1| DNA mismatch repair protein-MLH2/PMS1/Pms2 family [Micromonas sp.
           RCC299]
 gi|226523414|gb|ACO69396.1| DNA mismatch repair protein-MLH2/PMS1/Pms2 family [Micromonas sp.
           RCC299]
          Length = 771

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 168/401 (41%), Gaps = 34/401 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR +    +++I +G+++   + A+KEL+EN+LDA ++ +E  +   G+   ++ DNG 
Sbjct: 17  SIRPIGASSVHRICSGQVVLDLAGAVKELVENALDAGATNIEVRLRDHGQDSVEVVDNGC 76

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S+++ M  +++ TSKI   +D   + +FGFRGEAL S+ A+S L++ +R   ++ G 
Sbjct: 77  GVKSDDLAMMTKKYATSKIRRFEDLDALASFGFRGEALSSLCALSDLSVTTRTADSDAGT 136

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           ++    E  + +   VA   GT V V+++F  +P R     ++ + E   + ++++  A+
Sbjct: 137 RVEYDAEGNVRTRGVVARAVGTTVTVQNVFARLPVRRKELARNVKREYGKLLNILQAYAL 196

Query: 178 AYPKVSFTFSTIKS----NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
             P+     S         R  +      G+    ++ V G   I+  V           
Sbjct: 197 INPETRIVCSHQGKGKNAPRQTVLNTQGGGSLRAAVATVFGHKTIDGMVSKAA------- 249

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLLLEI 290
                 P   RG  ++ + F+NGR V            Y +         +P VVL   +
Sbjct: 250 ------PGCGRGAGDRQFFFVNGRPVDLPKAARVCNETYRQYNQTTSGTPFPCVVLDFRL 303

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST----------SSVLSKK 340
                DVNV P K  +     + +   +  +++K  +    +           S     +
Sbjct: 304 PTDAYDVNVTPDKRKVLLHGESKVLAGLRGALEKIWSPTAYTYAVAAAGAADGSETTRVR 363

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
           +  +           P  AT        + ++  R   +D 
Sbjct: 364 VHDAIGAARDVIAGGPSAATPALPPASAVGVKREREEDDDA 404



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 37/221 (16%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            ++      Q +  +I+    D L IVDQHA+ E   FE++++      +  Q LL P+ 
Sbjct: 556 DFRDMRVVGQFNLGFILCTLGDDLFIVDQHASDEIYNFERLQRTTT---LNRQPLLVPKK 612

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGP-----NAIAIREIPAILSKKNIPQLLRDII 517
           ++L   E   +  +       G              ++A+  +P           + ++I
Sbjct: 613 LELTAAETQTVHRNMPTFLANGFGFCEVDQPPPTVRSLALNSVPFSKGITFGADDVHELI 672

Query: 518 DEIIDSS---------------------------TTYTLQDRIENILATMACYGSIRSGR 550
             +                               +      R+  +LA  AC  SI  G+
Sbjct: 673 GMLDQGEYALPARSQLTVGLSRQSTGTPGSGLSVSEIVRPSRVRAMLAMRACRSSIMIGK 732

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            + +  M R+L  +        C HGRPT   L  +D+ KL
Sbjct: 733 ALDAKTMRRVLDNLSDLQAPWNCPHGRPTMRHL--ADLRKL 771


>gi|323448482|gb|EGB04380.1| hypothetical protein AURANDRAFT_55239 [Aureococcus anophagefferens]
          Length = 784

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 158/411 (38%), Gaps = 24/411 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L    I++IAAGE++ RP  A+KE+ EN++DA +  +   +A GG    +++D+G G
Sbjct: 47  IVPLDRATIDRIAAGEVVARPGNALKEMFENAIDAGARTIAVSVAEGGVKLLRVSDDGSG 106

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++ +   RH TSK+   +D  +I +FGFRGEAL SI  V+ L+++++        +
Sbjct: 107 VRKADLKLLCVRHATSKLRTFEDLQSIQSFGFRGEALASISHVAKLSILTKTRDGACAYR 166

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            A    + +    P A   GT + V DLF+ +P R   + +   +       +      +
Sbjct: 167 CAYRDGEPVDGPTPCAGADGTTITVEDLFYNMPTRRRAMAASAADQYHFVSRVCGAYAVH 226

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG------EDFINNAVELNEKSNEITL 233
                   + +      +     G+    I  V G       +F       ++       
Sbjct: 227 YAGRGVSVSCRKAHGACDVNVAGGDTLAAIRAVHGAVADDVREFSCARKPGDDPDVCTQD 286

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI-------RTAYAETIPLGR-YPVVV 285
            G           A    +F+N R V+       +         A       G+  P   
Sbjct: 287 DGG----EHACEFARF-TLFVNDRLVESAAFKRMVDEAYAASADAADGLGSRGKAKPFAY 341

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTSSVLSKKMIS 343
           L +++    VDVNVHP K  + F     I + I   ++K + +    +  + +  +K+ +
Sbjct: 342 LAIDVPGHHVDVNVHPTKKEVAFLYEAPILDTIRCHLEKLVAETAHEMRIADLSDRKLTA 401

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           S  +           +       EK+   + R    D   S          
Sbjct: 402 SPKRRKTSGGSQSSPSRGSLQRPEKMIRTDPRDQRMDAFFSPSQRKRAPPP 452


>gi|317027466|ref|XP_001399369.2| DNA mismatch repair protein (Pms1) [Aspergillus niger CBS 513.88]
          Length = 1055

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 161/406 (39%), Gaps = 32/406 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + I+QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 5   TIKAIEARSIHQIQSGQVIVDLCSVAKELVENSLDAGATSIEIRFKNNGLDLIEVQDNGS 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ +       +H TSK+S  +D + +HTFGFRGEAL S+ A+S   + +         
Sbjct: 65  GISPDNYANVALKHYTSKLSSYEDLTTLHTFGFRGEALSSLCALSDFRITTAQANQAPKA 124

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+   + VA   GT   V  +F  +P R     K+ + E   + +++   A
Sbjct: 125 TRLDFEPSGKLKKTQIVAGQKGTTASVESIFKGLPVRRRELEKNIKREYGKVLNLLHAYA 184

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDF----------------- 217
                V F+          +   STNGN    E I+ V G                    
Sbjct: 185 CVSTGVRFSVRNSVGKTKNVVVFSTNGNQTTKENIANVYGAKTLLALIPLDLALEFEPSA 244

Query: 218 -INNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAE 274
                +  + + N++T++G+   P F   R   ++   F+N R      I       Y  
Sbjct: 245 AAGRRITGSGELNKLTVRGHVSKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKS 304

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
              + + P V     +D    DVNV P K  I   +   + + +    ++++ +   S+ 
Sbjct: 305 F-NVSQSPFVFADFHMDTNAYDVNVSPDKRTILLHDAGALIDSL----KESLVQLFESSD 359

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
             + + ++         K  L    T   +         +  + +D
Sbjct: 360 QTVPQSLVVGSKPAPTLKQRLGSLQTQTQSPNRPAVEDADSSAADD 405



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 109/313 (34%), Gaps = 38/313 (12%)

Query: 305  YIRFRNPTIIRNFIIQSI-QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
              +      ++  I ++  + A+ +      +    K  +         + +    + + 
Sbjct: 701  EKKRHEEAEVQRLIQEAEDRAALPQGNNIHRANKMNKGAAHRDSTVQLMSTIDGSLSKIR 760

Query: 364  NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIACAQIHQNYI 418
            +   +L     R   +      +   +   +  EE          +       Q +  +I
Sbjct: 761  SQLGQLQESLRRWEEHHGPSQSEDETAAPQETAEERLSLTVSKDDFANMRIVGQFNLGFI 820

Query: 419  ISQT------------TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
            ++               D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL 
Sbjct: 821  LATRSSTDDSGPGSSAKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQPKRLDLT 877

Query: 467  EGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
              E  +++E+   L + G   E         G     +  +P         + L ++I  
Sbjct: 878  AVEEEIVIENQAALEKNGFIVEVDESGDEPIGRRCKLV-SLPLSKEVVFGVRDLEELIVL 936

Query: 520  IIDSSTTY---------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            + ++ T               ++  + A  AC  SI  G+ +   +M ++++ M      
Sbjct: 937  LSETPTNAARSATGMYIPRPSKVRKMFAMRACRSSIMIGKTLTVKQMQKVVQNMGTIDKP 996

Query: 571  SQCNHGRPTFIKL 583
              C HGRPT   L
Sbjct: 997  WNCPHGRPTMRHL 1009


>gi|149001722|ref|ZP_01826695.1| DNA mismatch repair protein [Streptococcus pneumoniae SP14-BS69]
 gi|147760180|gb|EDK67169.1| DNA mismatch repair protein [Streptococcus pneumoniae SP14-BS69]
          Length = 454

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/437 (21%), Positives = 188/437 (43%), Gaps = 43/437 (9%)

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           +  G   + I+ + G       +E+     +  + G+  +P   R N N   +FINGR +
Sbjct: 5   AGTGQLRQAIAGIYGLVSAKKMIEIENSDLDFEISGFVSLPELTRANRNYISLFINGRYI 64

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           ++  +   I   +   + +GR+P+ V+ + IDP   DVNVHP K  +R      +   + 
Sbjct: 65  KNFLLNRAILDGFGSKLMVGRFPLAVIHIHIDPYLADVNVHPTKQEVRISKEKELMTLVS 124

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP---------KYATSLTNTQE--- 367
           ++I  ++ ++ +   ++ +    +  +++   +T LP         K   S  +  E   
Sbjct: 125 EAIANSLKEQTLIPDALENLAKSTVRNREKVEQTILPLKENTLYYEKTEPSRPSQTEVAD 184

Query: 368 ---------------------------KLFLQENRLSTNDLLPSDDPTYSEDN---DPVE 397
                                      KL   E + +  D L   +   +  +   D +E
Sbjct: 185 YQVELTDEGQDLTLFAKETLDRLTKPAKLHFAERKPANYDQLDHPELDLASIDKAYDKLE 244

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
             EA+ +       Q+H  Y+ +Q  DGL I+DQHAA ER+ +E+ R+   +   + Q L
Sbjct: 245 REEASSFPELEFFGQMHGTYLFAQGRDGLYIIDQHAAQERVKYEEYRESIGNVDQSQQQL 304

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + ++ 
Sbjct: 305 LVPYIFEFPADDVLRLKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYEMC 364

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C HGR
Sbjct: 365 DMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNCPHGR 423

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  +    SD+EK+F R
Sbjct: 424 PVLVHFTKSDMEKMFRR 440


>gi|39979139|emb|CAE85513.1| related to DNA mismatch repair protein PMS1 [Neurospora crassa]
          Length = 1157

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 96/430 (22%), Positives = 170/430 (39%), Gaps = 34/430 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +    I+QI +G++I       KEL+EN+LDA ++ ++      G    ++ DNG G
Sbjct: 7   IKAIDPSTIHQIQSGQVIVDLCSVAKELVENALDAGATTIDVRFKNQGLDSIEVQDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRP-PQNNTGA 119
           ++S        +H TSK+S  DD S + TFGFRGEAL S+ A+SH T+++    +     
Sbjct: 67  ISSSNYESIALKHYTSKLSNYDDLSTLQTFGFRGEALSSLCALSHFTIVTCTQKEAPKAT 126

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           ++      K+ S   V+   GT V V +LF ++P R     ++ + E   + +++ + A 
Sbjct: 127 KLEFETSGKLKSTSVVSGQRGTTVSVENLFKSLPVRRRELERNIKREWGKVVNLLNQYAC 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAV------------- 222
               V FT S   +   +M   ST GN    E I  V G   +   +             
Sbjct: 187 IQTSVKFTVSQQPTKGKRMVLFSTKGNPTTRENIINVFGIKTMTALIAMDLRLQLKPTNT 246

Query: 223 --------ELNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAY 272
                   + ++   E+ + G+   P     R   ++   ++NGR              Y
Sbjct: 247 GLLAKMTAQDDDAMTEVRICGHISRPAHGEGRQTPDRQMFYVNGRPCGLPQFAKVFNEVY 306

Query: 273 AETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI--QKAINKKG 330
                  + P +   +++D    DVNV P K  I   +   + + + +S+     +    
Sbjct: 307 RSYNST-QSPFIFADIQLDTHLYDVNVSPDKRTILLHDQGQMLDNLRESLIELFELQDVT 365

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHL-PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           I  S     K  +       P   L P       +  E+           +    +  T 
Sbjct: 366 IPVSHTQLLKGSTFRGPSTVPLGSLTPAREKDSRDASEEPGSSLPSNRPENGPQGNRATR 425

Query: 390 SEDNDPVEES 399
              N+  +E+
Sbjct: 426 HAVNEDSDEA 435



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 28/258 (10%)

Query: 351  PKTHLPKYATSLTNTQEKLFLQEN--------------RLSTNDLLPSDDPTYSEDNDPV 396
               HLP+  T+ ++TQE    +                ++S +D               +
Sbjct: 839  WAKHLPRAGTASSSTQESSDGKPTIGLDAADAEEKLSLKISKSDFAKMKIVGQFNLGFII 898

Query: 397  EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
               EA+                 +Q  D L I+DQHA+ E+  FE+++       + SQ 
Sbjct: 899  AVREASSSHSLEHSPSQQSPAATTQEDDELFIIDQHASDEKYNFERLQSTTT---VQSQR 955

Query: 457  LLTPEIIDLLEGECALIMEHDEDLHRLGI--KAERFGPNAI----AIREIPAILSKKNIP 510
            L+ P+ + L   E  +I+EH   L   G   + +  G +A+     +  +P         
Sbjct: 956  LVQPKPLTLTAVEEEIILEHLPALAANGFQVRVDTSGESAVGSRCQLLSLPLSRETTFGV 1015

Query: 511  QLLRDIIDEIIDSSTTY-----TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
              L ++I  + D+ T+          ++  + A  AC  SI  GR +   +M +++R M 
Sbjct: 1016 ADLEELIFLLGDNPTSSATTAIPRPSKVRKMFAMRACRSSIMIGRALSRPQMEKVVRHMG 1075

Query: 566  KNPNSSQCNHGRPTFIKL 583
            +      C HGRPT   L
Sbjct: 1076 EMEKPWNCPHGRPTMRHL 1093


>gi|220678859|emb|CAX13350.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) [Danio
           rerio]
          Length = 215

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 3/201 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGEII+RP+ AIKE++EN LDA+S+ ++  +  GG     I DNG G
Sbjct: 6   IRRLDETVVNRIAAGEIIQRPANAIKEMMENCLDAKSTNIQITVKEGGLKLILIQDNGTG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 66  IRKDDMEIVCERFTTSKLQSFEDLSSIATYGFRGEALASISHVAHVTITTKTADAKCAYR 125

Query: 121 -IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                G+  S  +P A N GT++ V DLF+ +  R   LKS   E + I +V+ R AI  
Sbjct: 126 ANYCDGKLKSPPKPCAGNQGTLISVEDLFYNVSTRRKALKSPSEEYSRIVEVVSRYAIHN 185

Query: 180 PKVSFTFSTIKSNRYKMNFQS 200
              SF+          +    
Sbjct: 186 SGKSFSVKKQGEMVADVKTLP 206


>gi|3193291|gb|AAC19275.1| T14P8.6 [Arabidopsis thaliana]
 gi|7269006|emb|CAB80739.1| AT4g02460 [Arabidopsis thaliana]
          Length = 779

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 168/375 (44%), Gaps = 37/375 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR ++  +I++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG G
Sbjct: 17  IRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVIDNGCG 76

Query: 63  MTSEEIPMAVQ-----------RHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLM 109
           ++     + VQ           +H TSK+ D  D  N+ T+GFRGEAL S+ A+ +LT+ 
Sbjct: 77  ISPTNFKVCVQILRRTFDVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVE 136

Query: 110 SRPPQNNTGAQIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNL 167
           +R         +       +++ +  A   GT V VR LF  +P R   F ++ + E   
Sbjct: 137 TRTKNEPVATLLTFDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGK 196

Query: 168 ITDVIRRMAIAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
           +  ++   A+    V F  S    K+ +  +      G+  + I  V G     +     
Sbjct: 197 LVSLLNAYALIAKGVRFVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSL---- 252

Query: 226 EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
                         P   R  A++ Y FINGR V    +   +   Y +T    +YPV +
Sbjct: 253 -------------QPGTGRNLADRQYFFINGRPVDMPKVSKLVNELYKDT-SSRKYPVTI 298

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           L   +     D+NV P K  + F + T +   + + + +  +      S ++++   +S 
Sbjct: 299 LDFIVPGGACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSN--ASYIVNRFEENSE 356

Query: 346 HQDNAPKTHLPKYAT 360
             D A  +   K + 
Sbjct: 357 QPDKAGVSSFQKKSN 371



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 113/290 (38%), Gaps = 23/290 (7%)

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
            + +  F+    +K  N   I + + + +   SS+  +   K+     A +     E   
Sbjct: 468 QSTLNTFVTMGKRKHENISTILSETPVLRNQTSSYRVE---KSKFEVRALASRCLVEGDQ 524

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           L +  +S  D+ PS+  +   +            +      Q +  +II++    L IVD
Sbjct: 525 LDDMVISKEDMTPSERDSELGNRISPGTQADNVERHERVLGQFNLGFIIAKLERDLFIVD 584

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAA E+  FE +     ST +  Q LL P  ++L   E   ++ H + +   G   E  
Sbjct: 585 QHAADEKFNFEHL---ARSTVLNQQPLLQPLNLELSPEEEVTVLMHMDIIRENGFLLEEN 641

Query: 491 G----PNAIAIREIPAILSKKNIPQLLRDIIDEIIDS-------------STTYTLQDRI 533
                     +R IP   +     + L+D+I  + D+              T      R+
Sbjct: 642 PSAPPGKHFRLRAIPYSKNITFGVEDLKDLISTLGDNHGECSVASSYKTSKTDSICPSRV 701

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +LA+ AC  S+  G  ++  EM +++  +    +   C HGRPT   L
Sbjct: 702 RAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHL 751


>gi|111380661|gb|ABH09707.1| PMS1-like protein [Penicillium marneffei]
          Length = 1403

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 169/440 (38%), Gaps = 27/440 (6%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++QI +G++I      +KEL+ENSLDA ++ +E      G    ++ DNG G+  +    
Sbjct: 404 VHQIQSGQVIVDLCSVVKELVENSLDAGATSIEVRFKNDGLDSIEVQDNGSGIDPQNYES 463

Query: 71  AVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTGAQIAISGE- 126
              +H TSK++  DD +++ TFGFRGEAL S+ AVS+  +++    Q     ++      
Sbjct: 464 IALKHYTSKLASYDDLTSLTTFGFRGEALSSLCAVSNFHIITAQAHQAPKANKLEFEHSG 523

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFT 185
           K+   + VA   GT V + +LF  +P R     K+ + E   + +++   A     V F+
Sbjct: 524 KLKGSQIVAGQKGTTVSISNLFSRLPVRRKELEKNIKRELGKVINLLNEYACISTGVRFS 583

Query: 186 FSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNE------------- 230
                S + ++   +T  N    + I+ V G   +   + L  +                
Sbjct: 584 VKNTDSKKRQLVLLTTKANASIRDNIANVYGAKTLLTLIPLELELEFEPSATGKRLNRDL 643

Query: 231 --ITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
             I ++GY   P     RG  ++   ++N R      I       Y     + + P V+ 
Sbjct: 644 NKIHVRGYVSRPVVGEGRGTRDRQMYYVNSRPCGIPQIAKAFNEVYKTY-NISQAPFVLA 702

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISS 344
             ++D    DVNV P K  I   +   +   + +++ +     ++ +  S     K  + 
Sbjct: 703 DFQMDTNAYDVNVSPDKRTILLHDSAALIESLKEALDQMFQDAEQTVPQSQFTINKQQTD 762

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             Q   P         S T         +   S    +        +  +  +    T  
Sbjct: 763 IQQRLKPSPMRAPLDRSRTEQATPTEESQTDRSEPVQVTHQHAQEDKTAEVADNENITQE 822

Query: 405 QLGIACAQIHQNYIISQTTD 424
                   I ++    ++  
Sbjct: 823 TTDSQVTAISEDAAADESDH 842



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 22/178 (12%)

Query: 424  DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I E+   L + 
Sbjct: 1175 DELFIIDQHASDEKYNFERLQ---AETVVQNQRLVHPKTLDLTAVEEEIIRENKLALEKN 1231

Query: 484  GIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL------- 529
            G   E         G     +  +P         + L ++I  + ++ T+ T        
Sbjct: 1232 GFVIEVDDSGNEPIGRRCKLV-SLPLSKEVVFDIRDLEELIVLLSEAPTSATRNATTSDT 1290

Query: 530  ----QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                  ++  + A  AC  SI  G+ +   +M + +R M        C HGRPT   L
Sbjct: 1291 YIPRPSKVRKMFAMRACRSSIMIGKTLTVKQMEKAVRNMGTIDKPWNCPHGRPTMRHL 1348


>gi|326508973|dbj|BAJ86879.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 780

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 187/406 (46%), Gaps = 12/406 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + +  +++I +G++I   S A+KEL+ENSLDA ++ VE  +   G+ +F++ DNG G
Sbjct: 8   IKPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVGLKAYGEEWFKVADNGSG 67

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++         +H TSKISD  D +++ TFGFRGEAL S+ A+  LT+ +R      G  
Sbjct: 68  ISPSNFQALALKHHTSKISDFSDLNSVVTFGFRGEALSSLCALGKLTVETRTKDELVGTH 127

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       +SS R +A   GT V +  LF T+P R   F ++ + E   +  ++   A+ 
Sbjct: 128 LEFEHSGVVSSERKIARQVGTTVTIEKLFSTLPVRGKEFSRNIKKEYGKVISLLHAYALI 187

Query: 179 YPKVS--FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-SNEITLQG 235
              V    T +  K+++  +     + +  + I  V G + +      N   S    ++G
Sbjct: 188 AKGVRLLCTNTVGKNSKMVVVKTQGSSSLKDNIVTVFGLNTLKCLEPFNLALSEGCQVEG 247

Query: 236 YTGI--PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +     P   R + ++ + ++NGR V    +   +   Y  +    +YP+ VL   I   
Sbjct: 248 FLSKPGPGTGRNSGDRQFFYVNGRPVDMPKVTKLVNELYRSSNSR-QYPLAVLNFCIPTT 306

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
             DVNV P K  I F +   I   + ++I+   N +  S S    +      H ++  K 
Sbjct: 307 SYDVNVAPDKRKIFFSSEDTILLSLREAIESLYNPQQCSFSINHIEDPEKVNHTEDPVKE 366

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
             P     + +T   L  +EN  S  +    +D    + + P ++ 
Sbjct: 367 DDPTIDEPIKSTY--LMDKENVSSPENDNCKEDTDSDDQDPPKDQK 410


>gi|121716012|ref|XP_001275615.1| DNA mismatch repair protein (Pms1), putative [Aspergillus clavatus
           NRRL 1]
 gi|119403772|gb|EAW14189.1| DNA mismatch repair protein (Pms1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 1062

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 153/373 (41%), Gaps = 27/373 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIEVRFKNNGLDLIEVQDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ E       +H TSK+S  +D S +HTFGFRGEAL S+ A+S   +++         
Sbjct: 63  GISPENYENVALKHHTSKLSSFEDLSRLHTFGFRGEALSSLCALSEFRIVTAQANQAPKA 122

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+S  + VA   GT   V  LF  +P R     K+ + E   + +++   A
Sbjct: 123 TKLEFEMSGKLSKTQVVAGQKGTTASVEGLFKRLPVRRRELEKNIKREYTKVLNLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVELN--------- 225
                V F+              STN N    + I+ V G   +   + L+         
Sbjct: 183 CVSTGVRFSVRNTMGKNRNAVVFSTNDNQTTKDNIANVYGAKTLLALIPLDLVLEFEPSA 242

Query: 226 -------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N+I ++G+   P F   R   ++   F+N R      I       Y    
Sbjct: 243 AARRTAGGVPNKILVKGHISRPVFGEGRQTPDRQMFFVNARPCGLPQIAKAFNEVYKSF- 301

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGISTSS 335
            + + P V     +D    DVNV P K  I   +   + + + QS+ +           S
Sbjct: 302 NVSQSPFVFADFNMDTNAYDVNVSPDKRTILLHDAGALIDALKQSLTELFETSDQTVPQS 361

Query: 336 VLSKKMISSFHQD 348
            ++ +   +  Q 
Sbjct: 362 QVAGQRQPAPKQQ 374



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 101/257 (39%), Gaps = 32/257 (12%)

Query: 354  HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
             L +  + +T  Q+ L          +      P  + +           +       Q 
Sbjct: 752  SLSRIVSQMTRVQDGLRAYARGADYTEDEREATPAGTAEERLSLTVTKDDFARMRIIGQF 811

Query: 414  HQNYII---------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            +  +I+         S+T D L I+DQHA+ E+  FE+++     T + +Q L+  + +D
Sbjct: 812  NLGFILATRSPEGSSSETKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQSKRLD 868

Query: 465  LLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL 513
            L   E  +++E+   L + G   E         G     +  +P     +   +++ +L+
Sbjct: 869  LTAVEEEIVIENQFALEKNGFVVEVDDSGDEPIGQRCKLV-SLPLSKEVVFGMRDLEELI 927

Query: 514  RDIIDEIIDSSTTYT-------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
              ++ E+  +++  +          ++  + A  AC  SI  G+ +   +M R++R M  
Sbjct: 928  V-LLSEMPATTSARSAAPSNIPRPSKVRKMFAMRACRSSIMIGKNLTQKQMVRVVRNMGT 986

Query: 567  NPNSSQCNHGRPTFIKL 583
                  C HGRPT   L
Sbjct: 987  IDKPWNCPHGRPTMRHL 1003


>gi|297264532|ref|XP_001103074.2| PREDICTED: PMS1 protein homolog 1 [Macaca mulatta]
          Length = 770

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 192/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   ++   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KTRVSDHKMALMSVLGTAVMNNMESFQYHCEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               N+  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNETDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKMESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISAGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +  ++          +  + ++  +QT       
Sbjct: 419 GHCSSEISNTDKNTKNAFQDISMSNLSWENTQTEYSKTCF 458


>gi|326480755|gb|EGE04765.1| DNA mismatch repair protein mutL [Trichophyton equinum CBS 127.97]
          Length = 725

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 11/231 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE ++  GG    QITDNG 
Sbjct: 49  KIQALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEILVREGGLKLLQITDNGH 108

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   
Sbjct: 109 GIDHDDLSILCERFTTSKLQAFEDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAW 168

Query: 120 QIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
           +   S  K+           +P+A   GT + V DLF+ +P R    +S   E   + D+
Sbjct: 169 RAHYSDGKLVPAKPGQNASPKPIAGRKGTQITVEDLFYNVPTRRRAFRSASEEYAKVLDI 228

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV 222
           + R A+     +F+          ++  S N +  +RI Q+ G    N  V
Sbjct: 229 VGRYAVHCSGTAFSCKKHGEAGVSLST-SINSSIVDRIRQLHGGAVANELV 278


>gi|289618387|emb|CBI55111.1| unnamed protein product [Sordaria macrospora]
          Length = 1251

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 177/429 (41%), Gaps = 33/429 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +    I+QI +G++I       KEL+EN+LDA ++ V+      G    ++ DNG G
Sbjct: 7   IKAIDPSTIHQIQSGQVIVDLCSVAKELVENALDAGATTVDVRFKNQGLDSIEVQDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRP-PQNNTGA 119
           ++S        +H TSK++  DD SN+ TFGFRGEAL S+ A+SH T+++    +     
Sbjct: 67  ISSSNYESIALKHYTSKLATYDDLSNLQTFGFRGEALSSLCALSHFTIVTCTQKEAPKAT 126

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           ++      K+ S   V+   GT V V +LF ++P R     ++ + E   + +++ + A 
Sbjct: 127 KLEFETSGKLKSTTVVSGQRGTTVSVENLFKSLPVRRRELERNIKREWGKVVNLLNQYAC 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAV------------- 222
               V FT S   +   +M   ST GN    E I  V G   +   +             
Sbjct: 187 IQTGVKFTVSQQPTKGKRMVLFSTKGNPTTRENIINVFGVKTMTALIAMDLRLQLKPTTT 246

Query: 223 ----------ELNEKSNEITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRT 270
                     +  + + E+ + G+   P     R   ++   ++NGR             
Sbjct: 247 TGLLNKAPAAQDEDTTTEVRICGHISRPAHGEGRQTPDRQMFYVNGRPCGLPQFAKVFNE 306

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
            Y       + P +   +++D    DVNV P K  +   +   + + + +S+ +    + 
Sbjct: 307 VYRSYNST-QSPFIFADIQLDTHLYDVNVSPDKRTVLLHDQGQMLDNLRESLIELFELQD 365

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYS 390
           ++      + + SS  +  +             ++++     ++ L ++      +   +
Sbjct: 366 VTIPVSHIQPLKSSTFRGPSTAPSGSLTQARRRDSRDASEEPDSPLPSDTPGNGPEGGRT 425

Query: 391 EDNDPVEES 399
             +   E+S
Sbjct: 426 TRSTINEDS 434


>gi|70950630|ref|XP_744622.1| mismatch repair protein [Plasmodium chabaudi chabaudi]
 gi|56524651|emb|CAH78788.1| mismatch repair protein pms1 homologue, putative [Plasmodium
           chabaudi chabaudi]
          Length = 1094

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 154/329 (46%), Gaps = 10/329 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ + ++ I+ I + ++I   S  +KEL+ENS+DA ++ ++  +   G    +++DNG
Sbjct: 1   MKIKSIGDESIHNICSSQVIFTLSNVVKELVENSIDAGATEIKVKLVENGIKLIEVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI-HTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKIS  DD  N+  T GFRGEAL S+  +S L + ++  +   
Sbjct: 61  NGIKKINFENVCARHATSKISEFDDIHNVLDTLGFRGEALNSLCMLSDLYISTKHDEFEH 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
           G  +      K+    P+A   GT V   ++F  IP R    +K+ + + + +  ++++ 
Sbjct: 121 GYLLKFDKFGKLLHEEPIARLRGTTVSCENIFKNIPIRKKDLIKNIKNQLSDLLSLMQQY 180

Query: 176 AIAYPKVSFTFSTI-----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           AI Y ++ F    I      +    M   + + +  +    + G+  I N ++LN K+  
Sbjct: 181 AIIYHEIKFMIFNIVTQKGSTKNMNMLITNGSDDIKKNFYSIFGKKTIGNLIDLNIKNEN 240

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             ++GY       R + +  + ++N R +     ++ I            YP+++  +  
Sbjct: 241 WLVKGYISDSNSGRRDKDLQFYYMNSRPIHVIKNVNKIINTIYREFNSRLYPIIICNIIS 300

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           D + +D+NV P K  + F     +   I 
Sbjct: 301 DAKNIDINVTPDKREVFFTFENELCEQIK 329



 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 62/225 (27%)

Query: 415  QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
              YI  +    L I+DQHAA E+  FEK  + F    + SQ L+    ++L   +  +I 
Sbjct: 811  NEYIERKNNYALFIIDQHAADEKSNFEKYNKIFT---MKSQKLINKIELELSPAQIHIIE 867

Query: 475  EHDEDLHRLGIKAERFGPN--------------------------------AIAIREIPA 502
            ++     R G + E                                      + +  +P 
Sbjct: 868  KNLVIFLRNGFEIEIVEEPINKKRKINKDVHVGNFENAENDIPDEETLVQIKVYLLSLPV 927

Query: 503  ILSKKNIPQLLRDIIDEIIDSSTTYT---------------------------LQDRIEN 535
               K         ++  + +    +                               ++  
Sbjct: 928  FNGKILEVVDFMSLLYHLNNHPIIFDKGIDDSFLKDKSKLTENTGTWFNYNFPRPQKVWR 987

Query: 536  ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            ILA+ AC  ++  G+ +   EM  + +++    N   C HGRPT 
Sbjct: 988  ILASKACRNAVMVGKPLNISEMITIKKKLSVLQNPWNCPHGRPTI 1032


>gi|321476952|gb|EFX87911.1| putative PMS1, postmeiotic segregation increased 2 protein [Daphnia
           pulex]
          Length = 814

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 183/459 (39%), Gaps = 39/459 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +    +++I +G+++   ++A+KEL+ENSLD+ ++ VE  +   G    ++ D+G G
Sbjct: 10  IKPIDHSTVHRICSGQVVLTLAVAVKELVENSLDSGATAVEVRLKEFGSDSVEVIDDGSG 69

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++         +H TSKI   +D  N+ TFGFRGEAL S+ A+S L++ +    +  G +
Sbjct: 70  ISPSNFENLCLKHYTSKIEEFEDLLNVQTFGFRGEALSSLCALSALSVTTCEKGSKIGWK 129

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      K+      +  PGT V + +LF T+P R   F+K+ + E   +T+++    + 
Sbjct: 130 LEYDSHGKLVKQTQCSRQPGTSVSLLNLFSTLPVRHKEFIKNLRREFAKMTNMLTGYCLI 189

Query: 179 YPKVSFTFST-IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--------- 228
             K   T +         +       +  +  + V G+    N +E+             
Sbjct: 190 SKKTRITCTNSTGGRTSTVLSTRGGAHLKDNFTLVFGQKSWQNMLEIKATQPSEDILAEF 249

Query: 229 -------------NEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                             +G+         R  A++ Y FINGR      +   +   Y 
Sbjct: 250 NLNANILPDKLNEWPFQFEGFVSSCAHGTGRSCADRQYYFINGRPCDPAKVSKLVNEVYH 309

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
                 +YP +VL +     ++D+NV P K  +   N       ++ +++ ++N+     
Sbjct: 310 SY-NRNQYPSIVLNITTHSSEIDINVTPDKRQLMVANEK----ILLATVKASLNEIYREI 364

Query: 334 SSVLSKKMISSFHQDNA-----PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
               S +  S  ++  A     P T   +  +SL       +   +  S  +    D  +
Sbjct: 365 PCTFSLQNNSLLNKSPAVLTESPGTPSQRLRSSLAAFAAAGWKPSSPCSPGEKRKLDSCS 424

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
            +     +++             ++  +   +Q  D   
Sbjct: 425 PALKQKRLDDFVTIPISPSEKKTKLDVSIQDTQHADTKW 463



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 21/204 (10%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           +   + ++      Q +  +II++    L I+DQHAA E+  FE +++    T+I  Q L
Sbjct: 607 QISQSDFEKMEVVGQFNLGFIIARLNSDLFIIDQHAADEKYNFETLQRT---TRIQPQKL 663

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPA----ILSKKNI 509
           + P+ ++L     +L++++ E     G       +      + +  +P     +L   +I
Sbjct: 664 VCPKPLNLTAANESLLIDNMELFRSNGFDFVVNKDEDPTKRVLLSAVPLSGNWLLGPSDI 723

Query: 510 PQLLRDIIDEIIDSSTTYT----------LQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            +LL  + D  ++     +             R+  + A+ AC  ++  G  + S++M  
Sbjct: 724 DELLFMLQDSPMNEEEDRSNVSQASLARYRPSRVRAMFASRACRKAVMVGDPLTSVQMTN 783

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           LLR+M        C HGRPT   L
Sbjct: 784 LLRQMSNLKQPWNCPHGRPTMRHL 807


>gi|270003668|gb|EFA00116.1| hypothetical protein TcasGA2_TC002932 [Tribolium castaneum]
          Length = 807

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 105/564 (18%), Positives = 212/564 (37%), Gaps = 33/564 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ ++   +++I +G+++   +IA+KEL+EN++DA ++ ++  +   G    +++DNG G
Sbjct: 8   IQPINRDTVHRICSGQVVLSLAIAVKELVENAIDAGATIIDIQLKEYGSEIIEVSDNGSG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI   DD  N+ T GFRGEAL S+ A+S L+++++        +
Sbjct: 68  VLKENFQALTLKHYTSKIKQFDDLENLSTLGFRGEALSSLCALSDLSIVTKHTSAENATK 127

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
           I      KI S    A   GT V + +LF T+P R     K+ + E N +  ++    + 
Sbjct: 128 ITYDRSGKIISETVSARESGTTVTLENLFSTLPVRRREFTKNLKREFNKMCQLLYAYCLV 187

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              + F+ +    K ++  +          + I+ V G   + + +E+            
Sbjct: 188 SKGIKFSCTNTTSKGSKNTVVATEGLNMVKDNITNVFGPKQLPSLIEVEMVRPDETILAE 247

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                        T + +        G +  ++ + +IN R      +   +   Y +  
Sbjct: 248 YGIKLTEGDPLPFTFEFFISSVMHGSGRSTNDRQFFYINSRPCDPSKVARLVNEIYKQY- 306

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
              +YP V L +      VDVNV P K  +      ++ + I  S+ +A      +    
Sbjct: 307 NNNQYPFVYLNITSKSSLVDVNVTPDKRQVFLEKEKVLLSTIKASLIEAFKMFPSTYKMQ 366

Query: 337 LSKKMISSFHQDNAPKTHLPKY--ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                 ++  +D    +         S+T ++ K      R        +D    +  N 
Sbjct: 367 NLDLTQNTTIKDFFKDSDCSPRGLKRSVTESELKKGSTLERFKKRSKTENDKDLLASPNH 426

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                E              +        D       +A  E    E+ +    +T I +
Sbjct: 427 SSSLKEKRKVDNNSQLDTFIKIASEIIARDKREEKSFNALCEEEDIEETKTVCTNTFIKT 486

Query: 455 QTLLT---PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
            + +        +  E +    +  ++ +  +          A  I  IP  +++    +
Sbjct: 487 TSQIIAKDDCGTNKSEEKSLNTLCEEDIIEEIKTVCSSTTKEAENIVTIPKTINECEDKE 546

Query: 512 LLRDIIDEIIDSSTTYTLQDRIEN 535
            +    +EI  + +   L +RIE 
Sbjct: 547 EIEKT-NEIKITKSPSQLDNRIEE 569



 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 120/315 (38%), Gaps = 19/315 (6%)

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           I       N    KS        II              + I T      +       + 
Sbjct: 491 IAKDDCGTNKSEEKSLNTLCEEDIIEEIKTVCSSTTKEAENIVTIPKTINECEDKEEIEK 550

Query: 350 APKTHLPKYATSLTNTQEKLFLQENR------------LSTNDLLPSDDPTYSEDNDPVE 397
             +  + K  + L N  E+   +++              S  +     D       +  +
Sbjct: 551 TNEIKITKSPSQLDNRIEEKKEKKDSGEEPTKNESKFEKSVAEDKLLQDAPLKSQEELRK 610

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                 +       Q +  +II++  + L I+DQHA  E+  FE+++    ST + +Q L
Sbjct: 611 HISKEDFANMDVIGQFNLGFIITKLKNDLFIIDQHATDEKYNFEQLQ---ASTVMENQVL 667

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGI--KAERFGPNA--IAIREIPAILSKKNIPQLL 513
           + P+ + L  G  +L++E+++  ++ G   K +   P    +++  IP   S     Q +
Sbjct: 668 VNPKPLQLTAGNESLLIENEDIFNKNGFTFKIDESAPCTQKVSLTSIPLSKSMVFGKQDI 727

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            +++  + DS+ T     RI  + AT AC  S+  G+ +   +M RL+  M +      C
Sbjct: 728 EEMLFMLQDSNHTMCRPSRIRAMFATRACRKSVMIGKPLSKSDMRRLVNHMGEIEQPWNC 787

Query: 574 NHGRPTFIKLKLSDI 588
            HGRPT   L   D+
Sbjct: 788 PHGRPTMRHLINLDL 802


>gi|47216556|emb|CAG04734.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 816

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 154/370 (41%), Gaps = 77/370 (20%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ A+KELIEN LDA+S+ ++  +  GG    QI DNG G
Sbjct: 5   IRRLDETVVNRIAAGEVIQRPANAVKELIENCLDAKSTNIQVTVKDGGLKLLQIQDNGTG 64

Query: 63  M-TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGE------------------------ 95
           +   E++ +  +R  TSK+   +D S I T+GFRGE                        
Sbjct: 65  IRQKEDMEIVCERFTTSKLQTFEDLSAIATYGFRGEVSFSLCTIKKQILTILVRLFFNPS 124

Query: 96  -----ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK-ISSVRPVAMNPGTIVEVRDLFF 149
                AL SI  V+H+T+ ++        + + +  K  S  +P A N GT +       
Sbjct: 125 HSYLQALASISHVAHVTITTKTADAKCAYRASYTDGKPKSPPKPCAGNQGTQI------- 177

Query: 150 TIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
                                 +   AI      F+          +     N +  + I
Sbjct: 178 ----------------------LDEYAIHNSGKGFSVKKQGETLADVRTLP-NASVVDNI 214

Query: 210 SQVIGEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFING----------- 256
             V G       +E+  +  +    ++GY     ++        +FIN            
Sbjct: 215 RGVFGNTVSRELIEIGCEDQKLAFKMKGYISNANYS-VKKCILILFINRTCSWTDSGLLD 273

Query: 257 RTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316
           R V+   +   I + YA  +P   +P + L LEI P+ +DVNVHP K  + F +   +  
Sbjct: 274 RLVESSALKKAIESVYAAYLPKNTHPFLYLSLEIAPQNIDVNVHPTKHEVHFLHEDSVIE 333

Query: 317 FIIQSIQKAI 326
            + + I+  +
Sbjct: 334 NVQKHIESKL 343


>gi|289804550|ref|ZP_06535179.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 149

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/149 (46%), Positives = 94/149 (63%), Gaps = 3/149 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++RV+  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  EE+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQAEA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRD 146
            Q    G  +  +V+P A   GT +EV D
Sbjct: 121 WQAYAEGRDMDVTVKPAAHPVGTTLEVLD 149


>gi|320169208|gb|EFW46107.1| Pms2-PA [Capsaspora owczarzaki ATCC 30864]
          Length = 975

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 173/442 (39%), Gaps = 33/442 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  + +++I +G++I   + A+KEL+ENS+DA ++ +E  +   G    ++ DNG G
Sbjct: 126 IKPIDARSVHRICSGQVILSLATAVKELVENSIDAGATAIEIRLREHGAELIEVIDNGSG 185

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          ++ TSK++D  D + + TFGFRGEAL S+ A++ +++ +    +  G +
Sbjct: 186 IEPHNFQALTLKYHTSKLADFSDLTRLETFGFRGEALSSLCALAEVSVTTCSAAHAVGTR 245

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +    E  I++  P     GT + VR++F ++P R    +K+ + E   +  +++   I 
Sbjct: 246 LEFDTEGLITTKSPCPREQGTTISVRNIFASLPVRYRELMKNLKREYGKLIAMLQAYCIV 305

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              V  + S    K+ R  +          + ++ + G       +   +          
Sbjct: 306 ATGVRISCSNQIGKTPRSMVFASPGAETMKDNVTAIFGIKQTQQLMPFVQLSSSELTAAL 365

Query: 227 ----------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAE 274
                           + G    P    G +  ++   ++NGR      +       Y  
Sbjct: 366 ATTDAGSSQVIFPTFKITGLISKPMAGCGRSSTDRQCFYVNGRPCDMPKLSKVANEIYHS 425

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
            I  G +P + L L +    +DVNV P K  I   +       ++ + +  ++    +  
Sbjct: 426 FIA-GSFPALFLNLALPSAAIDVNVTPDKRTILLHDEKE----LVLAFKTCLSAISFARV 480

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
            V    +  S        T  P      T +   +     RLST  +L     T+S  + 
Sbjct: 481 DVAHPTISRSSSLAPPAVTKTPTLINHRTVSGLSMSQLSARLSTEPVLLGRRSTFSNSSA 540

Query: 395 PVEESEATHYQLGIACAQIHQN 416
            +              A I Q 
Sbjct: 541 SLVPPTRPLSSFSARHASIGQP 562



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 78/205 (38%), Gaps = 7/205 (3%)

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
              +++     +    +N         S     +   +       T +       Q ++ 
Sbjct: 761 DSESAVDAKVSEEGAGDNSPRKFRTKISPQSEQAAVAELARSIFKTDFAKMKVLGQFNRG 820

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
           +II++    L +VDQHA  E+  +EK++    S ++ SQ L+ P  + L      ++M++
Sbjct: 821 FIIAKLDKDLFLVDQHATDEKYNYEKLQ---ESVRLQSQPLIRPMPLQLTAANEVVLMDN 877

Query: 477 DEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
            +     G              + +  +P        P  + +++  + DS        R
Sbjct: 878 IDIFRMNGFDFVVDESAPATERVRLSAMPFSKKTTFGPSDVDELLYRLSDSPGVMCRPSR 937

Query: 533 IENILATMACYGSIRSGRKMQSIEM 557
           + ++LA+ AC  S+  G  + + ++
Sbjct: 938 VASMLASRACRKSVMIGDPLSTSQI 962


>gi|302806844|ref|XP_002985153.1| hypothetical protein SELMODRAFT_121896 [Selaginella moellendorffii]
 gi|300146981|gb|EFJ13647.1| hypothetical protein SELMODRAFT_121896 [Selaginella moellendorffii]
          Length = 722

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 163/337 (48%), Gaps = 18/337 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  + +  I++I +G++I   + A+KEL+ENSLDA ++ +E  +   G    +++DNG 
Sbjct: 10  PIHPIDKASIHRICSGQVILDLATAVKELVENSLDAGATSIEVKLKEHGGDAIEVSDNGS 69

Query: 62  GMTSE---------EIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMS 110
           G++S+         ++     ++ TSK+SD  D  ++ +FGFRGEAL S+ +++ +++++
Sbjct: 70  GVSSDNYQVFFLSLDLFGLTLKYHTSKLSDFSDLQSLTSFGFRGEALSSLCSLADVSILT 129

Query: 111 RPPQNNTGAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLI 168
           R  ++ TG +I       I S    A   GT V V  LF  +P R   FL++ + E + +
Sbjct: 130 RTKEDETGTRISYNRAGLIVSKETAARQVGTTVTVSKLFSPLPVRHKEFLRNVRREYSRM 189

Query: 169 TDVIRRMAIAYPKVSFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
             +++  A+    V    + +   +      ++  G+  E I  + G   +     ++  
Sbjct: 190 IAILQAYALISKNVRLVCTNLVGKSSRSTILRTQGGSVRENIVTIFGPKTMACLDPMDIS 249

Query: 228 -SNEITLQGYTGIP--TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
              +++++G+   P     RG++++ + F+NGR V        +   Y       +YP+ 
Sbjct: 250 LPEDLSIEGFVSKPGSGSGRGSSDRQFFFVNGRPVDLPKFSKLLNELYKSFNSQ-QYPMA 308

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
           VL   +     DVNV P K  +   + +   + +  +
Sbjct: 309 VLNFRLPTTAYDVNVTPDKRKLFLHSESSFMDGLRNA 345



 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 94/242 (38%), Gaps = 13/242 (5%)

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
            P  A       E     ++  +  +   +D     E+   +        +      Q +
Sbjct: 476 TPPNAFPKEKNFETARQADHSSNPQNGSATDGEALGEECGGLLSEAPLLKKCAKIIGQFN 535

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++    L I+DQHA+ E+  FE++     ST +  Q LL P  + L   E  +I 
Sbjct: 536 LGFIIARLDSDLFIIDQHASDEKYNFERL---SKSTVLNRQPLLRPMPLHLSSAEEIIIS 592

Query: 475 EHDEDLHRLGIKAERFGP----NAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTT 526
            H E   + G              I +  +P          ++ +L+  + ++   SS+ 
Sbjct: 593 THMEVFRQNGFDFTEQEDAPPGQRILLSAVPFSKNVTFGVSDVQELVSLLSEDYGSSSSH 652

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
                R+ ++LA+ AC  SI  G  +   EM +++R +        C HGRPT   L   
Sbjct: 653 LVQPSRVRSMLASRACRSSIMIGDALSKKEMEKVVRHLADLDAPWNCPHGRPTMRHL--Y 710

Query: 587 DI 588
           D+
Sbjct: 711 DL 712


>gi|281205683|gb|EFA79872.1| MutL DNA mismatch repair protein [Polysphondylium pallidum PN500]
          Length = 945

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 166/372 (44%), Gaps = 26/372 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  + ++ ++ I +G++I   S+A KEL+ENSLDA ++++E  +   G+   ++ DNG 
Sbjct: 55  KIAAIDKESVHLICSGQVIFDLSVATKELVENSLDAGATKIEVRLKEYGEESIEVIDNGS 114

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          +H TSKI +  D  ++ +FGFRGEAL S+ A++ +T+++R     T  
Sbjct: 115 GVEPHNFAALTLKHHTSKIQEFNDLQSVTSFGFRGEALSSLCALADVTIVTRAASAPTAT 174

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAI 177
           ++       I S   VA   GT V +   F  +P R   LK + + E + I  V++  A+
Sbjct: 175 KLIYDQNGAIVSQTSVAREVGTTVTLTSPFRKMPVRHQELKRNLKREYSKIQLVLQTYAV 234

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQG 235
               V        S   +    ST G  +  + +S V G                 T++G
Sbjct: 235 ISVGVRLVVYHQPSKGPRTPVLSTEGKPSLRDNVSAVFGGKTSAVLDSFAASDETFTVEG 294

Query: 236 YTGI----------------PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG 279
                                + +R + ++ +V++N R ++   +   I   Y      G
Sbjct: 295 LISKVGANGGAGSSVNSASGNSASRNSGDRQFVYLNKRPIEMNTLTKVINGLYQTFCKKG 354

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP----TIIRNFIIQSIQKAINKKGISTSS 335
            YP++ L +  DP   DVNV P K  +  +       ++++ +  + + A +   IS+S+
Sbjct: 355 SYPMIFLNVIADPTTYDVNVTPDKRKVFLQKELQLVNLVKDKLKSTWESAQSSFDISSSN 414

Query: 336 VLSKKMISSFHQ 347
           +   +  S   +
Sbjct: 415 MNELQTFSVIQK 426



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 12/218 (5%)

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
             R   +D    +D     +     + E  +++      Q ++ +II++    L I+DQH
Sbjct: 662 PPRKKKDDTTGYNDSNAQSELTRFFKKE--YFKDMSIIGQFNKGFIITRLGMDLFIIDQH 719

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA---ER 489
           AA E+  +E ++    S  I+SQ  + P   +L   + ++I++H     + G +    E 
Sbjct: 720 AADEKYNYESLQ---KSHVISSQPYIKPISFNLTVDDESIIIDHISIFKKNGFEFQIDEA 776

Query: 490 FGPN-AIAIREIPAILSKKNIPQLLRDIIDEIIDS---STTYTLQDRIENILATMACYGS 545
             P   + +   P     +  P  + ++I  I D            R+  + A+ AC  S
Sbjct: 777 APPKYKVKLTAFPHSNKTEFGPDDVYELITLIKDQAMIGLENIRLSRVSAMFASRACRKS 836

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           I  G  +   EM ++L  +    N   C HGRPT   L
Sbjct: 837 IMVGTSLTVPEMKKILDNLSTLDNPWCCPHGRPTMRHL 874


>gi|91079030|ref|XP_974934.1| PREDICTED: similar to DNA mismatch repair protein pms2 [Tribolium
           castaneum]
          Length = 840

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 105/564 (18%), Positives = 212/564 (37%), Gaps = 33/564 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ ++   +++I +G+++   +IA+KEL+EN++DA ++ ++  +   G    +++DNG G
Sbjct: 8   IQPINRDTVHRICSGQVVLSLAIAVKELVENAIDAGATIIDIQLKEYGSEIIEVSDNGSG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI   DD  N+ T GFRGEAL S+ A+S L+++++        +
Sbjct: 68  VLKENFQALTLKHYTSKIKQFDDLENLSTLGFRGEALSSLCALSDLSIVTKHTSAENATK 127

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
           I      KI S    A   GT V + +LF T+P R     K+ + E N +  ++    + 
Sbjct: 128 ITYDRSGKIISETVSARESGTTVTLENLFSTLPVRRREFTKNLKREFNKMCQLLYAYCLV 187

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              + F+ +    K ++  +          + I+ V G   + + +E+            
Sbjct: 188 SKGIKFSCTNTTSKGSKNTVVATEGLNMVKDNITNVFGPKQLPSLIEVEMVRPDETILAE 247

Query: 227 --------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                        T + +        G +  ++ + +IN R      +   +   Y +  
Sbjct: 248 YGIKLTEGDPLPFTFEFFISSVMHGSGRSTNDRQFFYINSRPCDPSKVARLVNEIYKQY- 306

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
              +YP V L +      VDVNV P K  +      ++ + I  S+ +A      +    
Sbjct: 307 NNNQYPFVYLNITSKSSLVDVNVTPDKRQVFLEKEKVLLSTIKASLIEAFKMFPSTYKMQ 366

Query: 337 LSKKMISSFHQDNAPKTHLPKY--ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                 ++  +D    +         S+T ++ K      R        +D    +  N 
Sbjct: 367 NLDLTQNTTIKDFFKDSDCSPRGLKRSVTESELKKGSTLERFKKRSKTENDKDLLASPNH 426

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
                E              +        D       +A  E    E+ +    +T I +
Sbjct: 427 SSSLKEKRKVDNNSQLDTFIKIASEIIARDKREEKSFNALCEEEDIEETKTVCTNTFIKT 486

Query: 455 QTLLT---PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
            + +        +  E +    +  ++ +  +          A  I  IP  +++    +
Sbjct: 487 TSQIIAKDDCGTNKSEEKSLNTLCEEDIIEEIKTVCSSTTKEAENIVTIPKTINECEDKE 546

Query: 512 LLRDIIDEIIDSSTTYTLQDRIEN 535
            +    +EI  + +   L +RIE 
Sbjct: 547 EIEKT-NEIKITKSPSQLDNRIEE 569



 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 8/241 (3%)

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTN-DLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
              P  +  +  + E+   ++N +        + D   S + +  +      +       
Sbjct: 598 QDAPLKSQDIRKSIEQKVTKDNDIKVRFRSKINPDSNKSAEEELRKHISKEDFANMDVIG 657

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
           Q +  +II++  + L I+DQHA  E+  FE+++    ST + +Q L+ P+ + L  G  +
Sbjct: 658 QFNLGFIITKLKNDLFIIDQHATDEKYNFEQLQ---ASTVMENQVLVNPKPLQLTAGNES 714

Query: 472 LIMEHDEDLHRLGI--KAERFGPNA--IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
           L++E+++  ++ G   K +   P    +++  IP   S     Q + +++  + DS+ T 
Sbjct: 715 LLIENEDIFNKNGFTFKIDESAPCTQKVSLTSIPLSKSMVFGKQDIEEMLFMLQDSNHTM 774

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
               RI  + AT AC  S+  G+ +   +M RL+  M +      C HGRPT   L   D
Sbjct: 775 CRPSRIRAMFATRACRKSVMIGKPLSKSDMRRLVNHMGEIEQPWNCPHGRPTMRHLINLD 834

Query: 588 I 588
           +
Sbjct: 835 L 835


>gi|292619425|ref|XP_693648.4| PREDICTED: mismatch repair endonuclease PMS2 [Danio rerio]
          Length = 849

 Score =  243 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 159/368 (43%), Gaps = 27/368 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + ++ ++QI +G+++   + A+KEL+ENS+DA ++ V+  +   G    +++DNG G
Sbjct: 12  IKAIDKQSVHQICSGQVVLSLATAVKELVENSIDAGATNVDVKLKDNGIELVEVSDNGKG 71

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +       +H TSK+ +  D  ++ TFGFRGEAL S+ A+S L++++       GA+
Sbjct: 72  VEEQNYEGLTLKHHTSKLKEFSDLIHVETFGFRGEALSSLCALSDLSVVTCHESAQIGAR 131

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +    + +++   P     GT V ++ LF T+P R   F ++ + E + +  V++   I 
Sbjct: 132 LVYDHDGRLTQCVPHPRQHGTTVTLQKLFSTLPVRHKEFQRNIKKEYSKMIFVLQSYCII 191

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE------ 230
              V  T S    +  R  +   S + +  + I  V G   + + +   + S        
Sbjct: 192 STGVRITCSNQMGQGKRSTVLCTSGSNSMRDNIGAVFGPKQLQSLIPFRQISPNDSVKED 251

Query: 231 ------------ITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETI 276
                         + G+        G +  ++ + FIN R      +   +   Y    
Sbjct: 252 YGLGGVDVPKDLFNIDGFVSQGDHGVGRSATDRQFFFINKRPCDPVKVSKLVNEVYHMY- 310

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
              +YP V L + +    VDVNV P K  I  +   ++   +  S+           S  
Sbjct: 311 NRHQYPFVALNIAVASDCVDVNVTPDKRQILLQEEKLLLAILKSSLIAMFETGVNKISLN 370

Query: 337 LSKKMISS 344
                 +S
Sbjct: 371 HISPAFTS 378



 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 125/336 (37%), Gaps = 13/336 (3%)

Query: 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV-HPAKSYIRFRNPTIIRN 316
            +      + ++    +            L E    Q    +  P     R  +    +N
Sbjct: 518 FLHHGINKTDVKAEIVDKPMDENLWSYETLPETKSEQHQNRIFSPEAKRARREDEPPAQN 577

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
            ++    +  + K  +  ++  K ++  F Q       L K    L   + K   QE + 
Sbjct: 578 CLVDFKSRNASLKFDAPVNIKKKTVLLPFSQQ-----ELSKRMQRLQAQRTKSNEQEPKY 632

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
                  +     + +++  +E     ++      Q +  +II++    L I+DQHA  E
Sbjct: 633 RRFRAKINPGENQTAEDELKKEISKDMFKEMEIIGQFNLGFIITKIKSDLFIIDQHATDE 692

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGP 492
           +  FE ++    +T +  Q L+ P+ + L      ++ME+ E   + G       +    
Sbjct: 693 KYNFEMLQ---QNTVLKGQRLIVPQSLHLPAISETVLMENLEIFRKNGFDFLIDEDAQVM 749

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
           + + +  +P   +    P  + ++I  + DS        R+  + A+ AC  S+  G  +
Sbjct: 750 DRVKLVSLPTSKNWTFGPNDIEELIFMLSDSPGIMCRPSRVRQMFASRACRKSVMVGTAL 809

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
            + EM +L+  M +      C HGRPT   L   D+
Sbjct: 810 NTSEMKKLVLHMGEIEQPWNCPHGRPTMRHLANLDM 845


>gi|242207940|ref|XP_002469822.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731053|gb|EED84901.1| predicted protein [Postia placenta Mad-698-R]
          Length = 709

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 160/336 (47%), Gaps = 12/336 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E +IN+IAAGEII RP+ A+KELIENSLDA+S+ +   +  GG    QI DNG G
Sbjct: 16  IRRLQESVINRIAAGEIIHRPASALKELIENSLDAQSTSIRVTVKDGGMRLLQIQDNGCG 75

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   ++P+  +R  TSK+S   D ++I T+GFRGEAL SI  V+HL ++++   +    +
Sbjct: 76  IRKTDLPILAERFTTSKLSSFSDLAHIATYGFRGEALASISYVAHLMVVTKTKADACAWK 135

Query: 121 IAI-----SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK--SEQVETNLITDVIR 173
                   +  K ++        GT      ++    AR++          +   + + R
Sbjct: 136 AIYTDGALAPTKGATSAEPKATAGTDGTTITVWHNALARMSGKPVLQYSDASVSASQLFR 195

Query: 174 RMAIAYPKVSF-TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           R   + P+VS  + ST +     +  Q+   +           D  ++  E  +   + +
Sbjct: 196 RAGSSGPEVSTPSGSTTEQAIRLLYGQTIAKDLLHTTVSSQSADTTSDDEEDADGVPQSS 255

Query: 233 LQGYTGIPTFNRGNANQFY--VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
                   T     A +    +FIN R V    I   +   Y   +P  +    +L L+I
Sbjct: 256 SWSAEAHFTNAHYQAKKMVLLLFINHRLVDSPRIKKALENVYTGILPKVKSTKDMLSLQI 315

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           DPR VDVNVHP K  + F +  +I   I  ++Q+ +
Sbjct: 316 DPRAVDVNVHPTKREVHFLDEDVIIERIADALQQKL 351


>gi|221052410|ref|XP_002257781.1| mismatch repair protein pms1 homologue [Plasmodium knowlesi strain
           H]
 gi|193807612|emb|CAQ38117.1| mismatch repair protein pms1 homologue,putative [Plasmodium
           knowlesi strain H]
          Length = 1193

 Score =  243 bits (620), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 155/337 (45%), Gaps = 11/337 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ + E+ I+ I + ++I   S  +KEL+ENS+DA+++ ++  +   G    Q+ DNG
Sbjct: 1   MKIQNIGEESIHNICSSQVIFTLSSVVKELVENSIDADATEIKIKLVENGIKLIQVNDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKI+  +D   +++T GFRGEAL S+  +S L ++++  +++ 
Sbjct: 61  AGIKKSNFENVCARHATSKITEFEDIHTSLNTLGFRGEALNSLCMLSDLHIVTKHDESSH 120

Query: 118 GAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
           G  +   G  ++S   P+A   GT V   ++F  IP R     K+ + + + +  ++++ 
Sbjct: 121 GYLLKFDGLGRLSHEEPIARLRGTTVSCENIFKNIPIRKKDFIKNIKSQLSDLLLLMQQY 180

Query: 176 AIAYPKVSFTFST------IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           AI Y  + F             N   +       +    +  + G+  I N ++ N    
Sbjct: 181 AIIYSHIKFCIQNIVTVKGNVKNMNMLLTNGGKESIKNSVHTIYGKRNIGNLIDFNIDEE 240

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
           E  L+ Y       R + +  + +IN R +     ++ I  +         YP+++  + 
Sbjct: 241 EWKLRAYISDNNSGRRDRDIQFYYINNRPIHVLKNVNKIINSIYREFNSRLYPIIICNIL 300

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
            D +  D+NV P K  + F     +   I  S+   +
Sbjct: 301 SDTKNFDINVTPDKREVFFIYENELCEKIKTSLVSLL 337



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 66/226 (29%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
            L I+DQHAA E+  FEK  + F    + SQ L++   ++L   +  +I ++ E     G 
Sbjct: 918  LFIIDQHAADEKSNFEKYNKIFT---MKSQKLISKIDLELSPAQIYIIEKNLEIFLHNGF 974

Query: 486  KAE------------------------------RFGPN-----AIAIREIPAILSKKNIP 510
              E                                G        + +  +P    K    
Sbjct: 975  DVEIVEEPAQKRRRLKADDSADAIDPTNVTDATDTGEGVLMQVKVYLLSLPVFNGKILEV 1034

Query: 511  QLLRDIIDEIIDSSTTYT---------------------------LQDRIENILATMACY 543
            +    ++  + +   TY                               ++  ILA+ AC 
Sbjct: 1035 EDFMSLLHHLTEHPITYDKAKFQMFIRNKGQPNKKTDTWFNHNFPRPQKVWRILASKACR 1094

Query: 544  GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
             +I  G+ +   EM ++ +++    N   C HGRPT   + ++D++
Sbjct: 1095 NAIMVGKPLNVTEMIKIKKKLSVLKNPWNCPHGRPTIKYI-INDMD 1139


>gi|50291023|ref|XP_447944.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527255|emb|CAG60895.1| unnamed protein product [Candida glabrata]
          Length = 907

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 188/450 (41%), Gaps = 36/450 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I ++SE+ +++I +G++I   + A+KEL+ENSLDA++++++      G    +++DNG
Sbjct: 1   MPISQISEQDVHRITSGQVIIDLASAVKELVENSLDAQATQIDITFRKYGIDGLEVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G++ ++      +H TSKI   DD  +NI+T GFRGEAL S+  ++ + +++       
Sbjct: 61  TGISKDDYESLALKHHTSKIKNFDDVLTNINTLGFRGEALSSLCGIARMAVITTTQPPRA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     +SS      N GT V + DLF  +P R  +F ++ +        +++  A
Sbjct: 121 DRLEYDMAGHLSSKSTTTRNKGTTVIISDLFHNLPVRQKDFERTAKRHFTKCITLLQSYA 180

Query: 177 IAYPKVSFTFSTIKSNRYK--MNFQSTNGNFPERISQVIGEDFIN--------------- 219
           I    V  T + I S   K  +   + N N  +RI  + G   +                
Sbjct: 181 IINESVRITVTNITSTGKKNNILSTAANQNLNKRIISIFGSTSLRGLSPISLTLDMNPFK 240

Query: 220 --------NAVELNEKSNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
                   +  + +    ++ + G     +F     + ++ ++F+N R +    ++    
Sbjct: 241 KNIKSRYVDDPDFDNMDYKVKVTGLFSQNSFGCGRTSKDRQFIFMNKRPIDYPAVVKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + +YP+ +L  E+ P  +DVN+ P K  +   N   + + + +++    + +
Sbjct: 301 EVYRTYNNV-QYPMFILNFELTPDLIDVNITPDKRTVVLHNEQSVIDVLYENLSDYFDTQ 359

Query: 330 GISTSSVLSKKMISSFHQ----DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
            ++      +  IS   +     +            +++T E  F+    +   +L+ ++
Sbjct: 360 DMALPKEEPQDHISKRRRLLDHPSDSADDGSSSQLEISSTNESSFVTPIEMDITELVETN 419

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
              Y                +     Q + 
Sbjct: 420 SFEYDGKESLPASEPDFRNDIEDDNMQCNS 449



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 14/192 (7%)

Query: 403 HYQLGIACAQIHQNYIISQTTDG----LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            ++      Q +  +I+     G    L IVDQHA+ E+  FE ++    +T+  SQ L+
Sbjct: 704 DFKDMKVVGQFNLGFILVTRNMGSNYDLFIVDQHASDEKFNFENLQ---QTTRFKSQKLI 760

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAER----FGPNAIAIREIPAILSKKNIPQLLR 514
           +PE I+L   +  ++M++     R G K E        + + +  IP            +
Sbjct: 761 SPETIELSVIDELIVMDNLSVFERNGFKIEIDEDAMAGHKVKLISIPVSKRTIFGVADFQ 820

Query: 515 DIIDEIIDSS---TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           +++  I +      +     +I  + A  AC  SI  G+ +    M R+++ +       
Sbjct: 821 ELVYLIKEDGGTNKSNIKCSKIRAMFAMRACRSSIMVGKPLNMRTMTRVVQNLSTLDKPW 880

Query: 572 QCNHGRPTFIKL 583
            C HGRPT   L
Sbjct: 881 NCPHGRPTMRHL 892


>gi|242819382|ref|XP_002487307.1| DNA mismatch repair protein (Pms1), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218713772|gb|EED13196.1| DNA mismatch repair protein (Pms1), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1012

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 96/471 (20%), Positives = 182/471 (38%), Gaps = 26/471 (5%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++QI +G++I      +KEL+ENSLDAE++ +E      G    ++ DNG G+       
Sbjct: 22  VHQIQSGQVIVDLCSVVKELVENSLDAEATSIEIRFKNDGLDSIEVQDNGSGIDPRNYES 81

Query: 71  AVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTGAQIAISGE- 126
              +H TSK++  DD +++ TFGFRGEAL S+ AVS+  +++    Q     ++      
Sbjct: 82  IALKHYTSKLTSYDDLTSLTTFGFRGEALSSLCAVSNFRIITAQAHQAPKANKLEFEHSG 141

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFT 185
           K+   + VA   GT V + +LF  +P R     K+ + E   + +++   A     V F+
Sbjct: 142 KLKGTQVVAGQKGTTVSISNLFSRLPVRRKELEKNIKRELAKVVNLLNEYACISIGVRFS 201

Query: 186 FSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNE------------- 230
                S + ++   +T  N    + I+ V G   +   + L  +                
Sbjct: 202 VKNTDSKKRQLVLLTTKANSSIRDNIANVYGAKTLLTLIPLELELEFEPSATGKRLNRDL 261

Query: 231 --ITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
             I ++GY   P     RG  ++   ++N R      I       Y     + + P V+ 
Sbjct: 262 NKIHVRGYVSRPVVGEGRGTRDRQMYYVNSRPCGIPQIAKAFNEVYKTY-NISQAPFVLA 320

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-KGISTSSVLSKKMISSF 345
             ++D    DVNV P K  I       +   + +++ +   + +     S  +     + 
Sbjct: 321 DFQMDTNAYDVNVSPDKRTILLHESAALIESLKEALDQLFQEAEQTVPQSRFTSNKQQTD 380

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
            Q     + +         TQ     +     +  +  +   T  +  +   E E    +
Sbjct: 381 IQQRFQSSPMGGITDRSRITQATPVEESQIDMSEQVQVTPQHTQEDQAEEEPEIETVTQE 440

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
           +      +   +  ++  DG    D+     R    +M    N  +I +  
Sbjct: 441 VTDRQIMVVDTHAGTEELDGPEDADEAVKRIRARAAEMSPQRNERRIPTLQ 491



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 112/313 (35%), Gaps = 38/313 (12%)

Query: 305 YIRFRNPTIIRNFIIQSIQKAI--NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSL 362
             + R    +++ I ++ ++A   ++        + K   ++ H        L    T +
Sbjct: 650 EKKAREDAKVQDLIRKAEERAATHSENHSKRGKCIEKGQQTNKHSTAQLVGTLESSLTKI 709

Query: 363 TNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIACAQIHQNY 417
               E L  Q       D    ++  + +     EE          +       Q +  +
Sbjct: 710 QTQMEALQKQLQSYEGFDATKEEEELFGKQQKTGEERLSLTVSKDDFAKMRIVGQFNLGF 769

Query: 418 IISQTTDG-----------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           I++  + G           L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL 
Sbjct: 770 ILATRSHGVDEPTAPTQDELFIIDQHASDEKYNFERLQ---AETVVQNQRLVHPKTLDLT 826

Query: 467 EGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
             E  +I E+   L + G   E         G     I  +P         + L ++I  
Sbjct: 827 AVEEEIIRENKAALEKNGFVIEVDDTGDEPIGRRCKLI-SLPLSKEVVFDVRDLEELIVL 885

Query: 520 IIDSSTTY---------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           + ++ T               ++  + A  AC  SI  G+ +   +M + +R M      
Sbjct: 886 LSEAPTARNSLTSDTYVPRPSKVRKMFAMRACRSSIMIGKTLTVKQMEKAVRNMGTIDKP 945

Query: 571 SQCNHGRPTFIKL 583
             C HGRPT   L
Sbjct: 946 WNCPHGRPTMRHL 958


>gi|126334368|ref|XP_001377577.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 989

 Score =  243 bits (619), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   + A+KEL+ENS+DA ++ ++  +   G    +++DNG G
Sbjct: 138 IKPIDRKSVHQICSGQVVLNLATAVKELLENSVDAGATNIDLKLKEYGADLIEVSDNGLG 197

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI D  D +++ TFGFRGEAL S+ A+S + + +       G +
Sbjct: 198 VEKENFEGLTLKHHTSKIQDFSDLTHVETFGFRGEALSSLCALSDVMISTCHKSATIGTR 257

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V++   I 
Sbjct: 258 LVFDHNGKIVQKIPYPRPQGTTVSVQQLFSTLPVRYKEFQRNIKKEFTKMVQVLQAYCII 317

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
              +    +    +  R  +   + N    E I  V G+  + + +   +          
Sbjct: 318 STGIRINCTNQIGQGKRQTIVGTNGNSTIKENIGAVFGQKQLQSLIPFVQLPPSESICEE 377

Query: 227 --------KSNEITLQGYTGIPTFNRGNAN--QFYVFINGRTVQDKFILSTIRTAYAETI 276
                     N  ++ G+        G +   + + FIN R      I   +   Y    
Sbjct: 378 FGINCNDALHNLFSISGFVSRSDHGVGRSTTERQFFFINQRPCDPAKISRIVNEVYH-LY 436

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              +YP VVL + +D   VD+NV P K  I  +    +   +  S+    + 
Sbjct: 437 NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKFLLAVLKTSLIGMFDS 488



 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     + +++  +E     +       Q +  +II++  + L I+DQHA  E+  FE +
Sbjct: 780 SPGENQAAEDELRKEISKDMFAEMEIIGQFNLGFIITKLNEDLFIIDQHATDEKYNFEML 839

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK--AERFGP--NAIAIRE 499
           +     T +  Q L+ P+ ++L     A+++E+ E   + G     +   P    + +  
Sbjct: 840 QLH---TVLQGQRLIMPQTLNLTAVNEAILIENLEIFRKNGFDFIIDEHAPVTERVKLIS 896

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P   +    PQ + ++I  + D         R+  + A+ AC  S+  G  +   EM +
Sbjct: 897 LPTSKNWTFGPQDIDEMIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNKNEMKK 956

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L+  M +  +   C HGRPT   +
Sbjct: 957 LITHMGEIEHPWNCPHGRPTMRHI 980


>gi|328769413|gb|EGF79457.1| hypothetical protein BATDEDRAFT_89533 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 613

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 119/609 (19%), Positives = 238/609 (39%), Gaps = 87/609 (14%)

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ- 114
           DNG G++  ++ +  +R+ TSKIS+  D S I++FGFRGEAL S+  +S ++L +   + 
Sbjct: 4   DNGCGISEVDLAVIGKRYYTSKISEFEDISTINSFGFRGEALNSLCTISKVSLTTCTKET 63

Query: 115 NNTGAQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE-QVETNLITDVI 172
              G ++  +   ++     +A  PGT +++ ++F  +P RL   K + + E     + +
Sbjct: 64  MPLGFKLEYNLSGEVIQKSRIARAPGTTIQITNIFSQLPVRLCEFKRQIKKEYIKCIECV 123

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNE 230
           +  A++   V   F  + S   K N   T G+    E +  V G  F  + +++  +   
Sbjct: 124 QAYALSSTGVRINFLNVSSKGSKSNILQTKGSNVLRENVISVFGAAFCKSLLDIRFEFTH 183

Query: 231 ----------------------------ITLQGYTGIPTFNRGN--ANQFYVFINGRTVQ 260
                                       + + G    P    G    ++ ++F+N R V 
Sbjct: 184 KSNTNDSSVKLDKITAETFNLEEAHASPVVVSGLLSKPQLGCGRTGRDRQFIFVNRRPVD 243

Query: 261 DKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQ 320
              +  +I   Y + +   + P+ +L + +DP  +DVN+ P K  +   N   +   I +
Sbjct: 244 IAKVSKSINDTYHDFVTT-QNPIFILNISVDPGWIDVNISPDKRLLAILNEAALIQGIQE 302

Query: 321 SIQKAIN-----------------------KKGISTSSVLSKKMISSF---HQDNAPKTH 354
            IQ+++                        +      S +  + IS F   H +N P  +
Sbjct: 303 GIQRSLRPLREMFDHPISSSQGRSSQGSSIESFPIGISTIKTRPISRFVTDHSENMPDCN 362

Query: 355 LPKYATSLT--------------NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES- 399
               +   +                 ++L  +   + T   L         ++   E + 
Sbjct: 363 FQSKSAMDSIGSLMHQDYNGLVQVNTDQLRRRFKSMKTLTKLYPRSHRILLNSKLAEPTF 422

Query: 400 -EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            + + ++      Q +  +I++   + + I+DQHA+ E+  +E ++Q   +   T Q L+
Sbjct: 423 IQKSDFKSMTVLGQFNLGFILALHGNMIFIIDQHASDEKYRYETLQQIAMT---TFQPLV 479

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERF---GPNAIAIREIPAILSKKNIPQLLRD 515
               + L   +  LI++  + L   G   E+    G +   +  +P I         L +
Sbjct: 480 QKLELTLTYQQERLILQWKQSLRERGFVLEQIEKDGRDYFQLIAVPHIRDLHLGIADLEE 539

Query: 516 IIDEI-IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           I+ ++   S        R     A+ AC  +   G  +   +M  ++  M +      C 
Sbjct: 540 ILAKLGPASGQRVPHCTRTLKYFASKACRQATMIGDPLSYAKMCAIIENMGRIEQPWNCP 599

Query: 575 HGRPTFIKL 583
           HGRPT   L
Sbjct: 600 HGRPTMRLL 608


>gi|123479589|ref|XP_001322952.1| DNA mismatch repair protein [Trichomonas vaginalis G3]
 gi|121905807|gb|EAY10729.1| DNA mismatch repair protein, putative [Trichomonas vaginalis G3]
          Length = 687

 Score =  243 bits (619), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 179/384 (46%), Gaps = 20/384 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E +I +IAAGE+I  P    KEL+EN+LD+ + R+  +  GGG +  +++DNG G
Sbjct: 19  IHQLDETVIKRIAAGEVIHGPINVFKELLENALDSGADRISIIFKGGGTTLIEVSDNGCG 78

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E++ +  +RH TSKI+   D + + TFGFRGEAL SI  +S+L++ +       G  
Sbjct: 79  ISDEDMELVCKRHTTSKITSYKDIAELQTFGFRGEALFSISCISNLSIKTNQKDTTLGTL 138

Query: 121 -IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               +G+ I  ++      GT +  +++F     RLN L + ++    +  ++ +  +A 
Sbjct: 139 GNYYNGDLIGELQSCTCTKGTTITAQNIFLGNQQRLNSLPNFRLRNRKVIFLMLKYCVAM 198

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+      ++ + +  +T+ +    +        ++  +     +       + G 
Sbjct: 199 PNVAFSLFVDDKDKIRSSGMATHEDVLRSLFSYQDTTRLDFEITKTASAAI-----FLGS 253

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P       N   VF+NGR V +  I   I   Y +    G  P  ++LL+I  + +DVNV
Sbjct: 254 PKKKMMKING--VFVNGRLVHNDTIKRGITKLYDQYTKPGVIPFFIVLLKISSQNLDVNV 311

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN----------KKGISTSSVLSKKMISSFHQDN 349
           HPAK  +       I N I+  +++ +           K    T+S      I    +++
Sbjct: 312 HPAKKTVLIAREKFIANVILSKVEQHLKVLYSKREEKTKIVNFTNSEEVHDEIPPLRKNS 371

Query: 350 APKTHLPKYATSLTNTQEKLFLQE 373
             KT L   +       E  FL E
Sbjct: 372 YVKTKLEIESEEKQKDVEAHFLDE 395


>gi|326922471|ref|XP_003207472.1| PREDICTED: PMS1 protein homolog 1-like [Meleagris gallopavo]
          Length = 920

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/357 (25%), Positives = 165/357 (46%), Gaps = 19/357 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++LS + +  +++ ++I      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLSAETVRLLSSSQVITSVVSVVKELIENSLDACATTIDIRLENYGFDKIEVRDNGNGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
              ++P+   +H TSKI  S+D   + T+GFRGEAL SI  VS + + ++   ++   Q 
Sbjct: 62  KVADVPVMAVKHYTSKINSSEDLERLTTYGFRGEALGSICCVSEVLVTTKTADDDISTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     ++S +P  +  GT V V  LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDSNGHVTSQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNKKCKEELKKVQDLLIAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  TF   K+  ++ N  S   +       V+G   + + V      +  EI L G
Sbjct: 182 IKPELRITFVHNKAAIWQKNRVS---DHKMACMSVLGTAVMGSMVPFQHRCEDPEINLSG 238

Query: 236 YTGI-----PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLL 287
           +           +  ++ + ++FIN R V  K IL  IR  Y+  +       YPV  L 
Sbjct: 239 FLPKAESDSSLTSLSSSERSFIFINDRPVHQKEILKLIRQYYSVLMQKDSARLYPVFFLN 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           + +    VDVN+ P K+ +  +    +   +   ++        + S   +K  ++S
Sbjct: 299 ITVPASAVDVNLTPDKTEVLLQYKDCVLLAVEHVLKSLYGPLPATVSGEANKTDVTS 355


>gi|70940514|ref|XP_740663.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518530|emb|CAH84055.1| hypothetical protein PC300836.00.0 [Plasmodium chabaudi chabaudi]
          Length = 357

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 154/329 (46%), Gaps = 10/329 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ + ++ I+ I + ++I   S  +KEL+ENS+DA ++ ++  +   G    +++DNG
Sbjct: 1   MKIKSIGDESIHNICSSQVIFTLSNVVKELVENSIDAGATEIKVKLVENGIKLIEVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI-HTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKIS  DD  N+  T GFRGEAL S+  +S L + ++  +   
Sbjct: 61  NGIKKINFENVCARHATSKISEFDDIHNVLDTLGFRGEALNSLCMLSDLYISTKHDEFEH 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
           G  +      K+    P+A   GT V   ++F  IP R    +K+ + + + +  ++++ 
Sbjct: 121 GYLLKFDKFGKLLHEEPIARLRGTTVSCENIFKNIPIRKKDLIKNIKNQLSDLLSLMQQY 180

Query: 176 AIAYPKVSFTFSTI-----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           AI Y ++ F    I      +    M   + + +  +    + G+  I N ++LN K+  
Sbjct: 181 AIIYHEIKFMIFNIVTQKGSTKNMNMLITNGSDDIKKNFYSIFGKKTIGNLIDLNIKNEN 240

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             ++GY       R + +  + ++N R +     ++ I            YP+++  +  
Sbjct: 241 WLVKGYISDSNSGRRDKDLQFYYMNSRPIHVIKNVNKIINTIYREFNSRLYPIIICNIIS 300

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           D + +D+NV P K  + F     +   I 
Sbjct: 301 DAKNIDINVTPDKREVFFTFENELCEQIK 329


>gi|296205072|ref|XP_002749606.1| PREDICTED: PMS1 protein homolog 1 [Callithrix jacchus]
          Length = 931

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 189/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAADAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++    S +      +  V+G   +NN    E + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQKTRVSGH---KMALMSVLGTAVMNNMKSFEYHSEDSQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQ-----------SIQKAINKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +             +     NK  +S + +
Sbjct: 299 IDVPTADVDVNITPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSCENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F +  +   + P   TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDMLFTKMESSGKNYPNVDTSVIVFQNDVHNDESVKNTDDCLNHQISVGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +    + +          A  + ++  +Q        
Sbjct: 419 GHCSSENSDIDKNTENAFQDIAMSNLSWENTQMEYSKTCF 458


>gi|84784055|gb|ABC61991.1| MLH1-like protein 3 [Trichomonas vaginalis]
          Length = 687

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 179/384 (46%), Gaps = 20/384 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L E +I +IAAGE+I  P    KEL+EN+LD+ + R+  +  GGG +  +++DNG G
Sbjct: 19  IHQLDETVIKRIAAGEVIHGPINVFKELLENALDSGADRISIIFKGGGTTLIEVSDNGCG 78

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E++ +  +RH TSKI+   D + + TFGFRGEAL SI  +S+L++ +       G  
Sbjct: 79  ISDEDMELVCKRHTTSKITSYKDIAELQTFGFRGEALFSISCISNLSIKTNQKDTTLGTL 138

Query: 121 -IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               +G+ I  ++      GT +  +++F     RLN L + ++    +  ++ +  +A 
Sbjct: 139 GNYYNGDLIGELQSCTCTKGTTITAQNIFLGNQQRLNSLPNFRLRNRKVIFLMLKYCVAM 198

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           P V+F+      ++ + +  +T+ +    +        ++  +     +       + G 
Sbjct: 199 PNVAFSLFVDDKDKIRSSGNATHEDVLRSLFSYQDTTRLDFEITKTASAAI-----FLGS 253

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P       N   VF+NGR V +  I   I   Y +    G  P  ++LL+I  + +DVNV
Sbjct: 254 PKKKMMKING--VFVNGRLVHNDTIKRGITKLYDQYTKPGVIPFFIVLLKISSQNLDVNV 311

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAIN----------KKGISTSSVLSKKMISSFHQDN 349
           HPAK  +       I N I+  +++ +           K    T+S      I    +++
Sbjct: 312 HPAKKTVLIAREKFIANVILSKVEQHLKVLYSKREEKTKIVNFTNSEEVHDEIPPLRKNS 371

Query: 350 APKTHLPKYATSLTNTQEKLFLQE 373
             KT L   +       E  FL E
Sbjct: 372 YVKTKLEIESEEKQKDVEAHFLDE 395


>gi|150865337|ref|XP_001384508.2| hypothetical protein PICST_58454 [Scheffersomyces stipitis CBS
           6054]
 gi|149386593|gb|ABN66479.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 809

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/610 (20%), Positives = 246/610 (40%), Gaps = 64/610 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ + +K +++I +G++I      +KEL+ENS+DA S+++E      G     +TDNG
Sbjct: 1   MAIKSIDQKDVSKITSGQVIIDLKSIVKELVENSIDANSTKIEINFQNYGIDSISVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPP---- 113
            G+  E+      R  TSKIS  +D   + T GFRGEAL SI +V S + +++       
Sbjct: 61  KGIKKEDFEFVCLRSHTSKISEFEDLDKLSTLGFRGEALNSICSVSSKVKIVTCTDYPKN 120

Query: 114 ---QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLIT 169
                +   +++ S  KI          GT V +  +FF +P R  NF+K+ + E +   
Sbjct: 121 HELDYDKAGKLSKSVSKIGGGFS--KQTGTSVSIEKIFFDLPVRLKNFVKNSKREFHKAI 178

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELN- 225
           + + +  + YP++ F+   + +++  +   S  G+     + +  V G +     VEL  
Sbjct: 179 NFLTQYLLIYPEIKFSVFNVVNSKKSLALSSRGGSKSTILDNMITVFGANGAKGLVELKL 238

Query: 226 EKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPV 283
             S +I ++GY    +F  G +  ++ ++FIN R V  K +   +   Y     + +YP+
Sbjct: 239 LISEDIQIEGYISSYSFGLGRSVTDRQFMFINKRPVMLKKLSKIVNDVYKSFNHM-QYPI 297

Query: 284 VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-NKKGISTSSVLSKKMI 342
            +L + IDP  +DVN+ P K  I   +   +   I   +     ++  +   ++   ++ 
Sbjct: 298 FILNIAIDPSALDVNLTPDKGMIMIHSEQDLFEKIRLDLIGFFESQDNVIPRNLERHELN 357

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            S       K  +            KL L +    ++    SD          ++     
Sbjct: 358 KSTFTKREKKPSVQNIEPDSDIEDIKLPLAKEMGESSIATESDTIVQESCASGLDN--IK 415

Query: 403 HYQLGIACAQIHQNYIISQTTDGL----VIVDQ---HAAHERLIFEKMRQDFNSTKITSQ 455
            +       +  Q +++ +  + L    V+ D    +   E+    ++        I S 
Sbjct: 416 EHYQESNVVEDGQEHLLPEHEESLQVVTVVTDPETSNIDQEQRNTFELINKEREQDIGSP 475

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLH------------------------RLGIKAERFG 491
                + I+  E        +D+ +                         R   +  +  
Sbjct: 476 DDDEDQPIEGREDVDTKEEGNDQIIEDDSKNLASSKYSPINTLAPEYDDHRKNYQITQQK 535

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI-ENILATMACYGSIRS-- 548
              I I E      + +  +L  D++   ++S+ ++ +   I E +     C+ S+ +  
Sbjct: 536 KCLIRINE--QEFEESHNKRLKIDMLHNRVESANSHAIVSSIKEEM-----CHTSLNNNG 588

Query: 549 GRKMQSIEMN 558
            R ++ +E+ 
Sbjct: 589 NRSLKLLEIQ 598



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
               +       Q +  +I+    D  L I+DQHA+ E+  FE++        I  Q L+
Sbjct: 608 SRKDFLKMKLIGQFNLGFILVTLDDNNLFIIDQHASDEKYNFERL---NQELSIKIQRLI 664

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLR 514
            P+ I+L   +  L++EH++     G +     E    + I +  +P+           +
Sbjct: 665 VPQTIELSIIDELLVIEHEQIFMSNGYQFTVVLEAKPGSRIRLNTMPSSRGVVFDLNDFQ 724

Query: 515 DIIDEIIDSSTTYTLQ-DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           ++I+ +  +     L+  +I N+LA  AC  SI  G+ +    M ++++ + +      C
Sbjct: 725 ELINLVNTNPRNKNLKCSKIRNLLAMRACRSSIMIGQPLTRGRMTKVVQNLSQLDKPWNC 784

Query: 574 NHGRPTFIKL 583
            HGRPT   L
Sbjct: 785 PHGRPTMRHL 794


>gi|83032814|ref|XP_729204.1| DNA mismatch repair protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23486315|gb|EAA20769.1| DNA mismatch repair protein, C-terminal domain, putative
           [Plasmodium yoelii yoelii]
          Length = 1157

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 98/501 (19%), Positives = 196/501 (39%), Gaps = 18/501 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ + ++ I+ I + ++I   S  +KEL+ENS+DA ++ ++  +   G    +++DNG
Sbjct: 1   MKIKSIGDESIHNICSSQVIFTLSNVVKELVENSIDAGATEIKVKLVENGIKIIEVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI-HTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKIS  DD  NI  T GFRGEAL S+  +S L + ++  +   
Sbjct: 61  NGIKKINFENVCARHATSKISEFDDIHNILDTLGFRGEALNSLCMLSDLCISTKHDEFEH 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
           G  +      K+    P+A   GT V   ++F  IP R    +K+ + + N +  ++++ 
Sbjct: 121 GYLLKFDKFGKLIHEEPIARLRGTTVSCENIFKNIPIRKKDLIKNIKSQLNDLLTLMQQY 180

Query: 176 AIAYPKVSFTFSTIKSNR-----YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           AI Y ++ F    + + +       M   + + +  +    + G+  I N ++ N  +  
Sbjct: 181 AIIYHEIKFMIFNVVTQKGCTKNMNMLITNGSDDIKKNFYSIFGKKNIGNLIDFNITNEN 240

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             ++GY       R + +  + ++N R +     ++ I            YP+++  +  
Sbjct: 241 WLVKGYISDSNSGRRDKDLQFYYMNNRPIHVIKNVNKIINTIYREFNSRLYPIIIFNILS 300

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV-----LSKKMISSF 345
           D + +D+NV P K  + F     +   I   + K +  K  +            K     
Sbjct: 301 DSKNIDINVTPDKREVFFTFENELCEEIKTELIKLLTPKTSNFVDTQIGDYFFVKSSRLI 360

Query: 346 HQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
             + A      + A    T   E+    E            +  Y+    PV E+E  HY
Sbjct: 361 KSEEAQNERQSERAEIERTEHGERTEYGERAEHGERQSERAEGEYTNVGRPVFENEELHY 420

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                   +   Y  ++  +    + +    +    E +       K  ++     +   
Sbjct: 421 TSIDYKKMVKNEYTENEENEENDKIFREEVSKNEDTENLYFSEGQNKYDNKMANQKDNNF 480

Query: 465 LLE--GECALIMEHDEDLHRL 483
                   +  ++   +  + 
Sbjct: 481 EDAEKSYISNGIKIKTEFEKF 501



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 77/240 (32%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
            L I+DQHAA E+  FEK  + F    + SQ L+    ++L   +  +I ++     R G 
Sbjct: 871  LFIIDQHAADEKSNFEKYNKIFT---MKSQKLINKIELELSPAQIHIIEKNFVIFLRNGF 927

Query: 486  KA--------------------------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
            +                           E      + +  +P    K         ++  
Sbjct: 928  EIEIIEEPINKKRKINNDENNDENIISEETLMEMKVYLLSLPVFNGKILEVVDFMSLLHH 987

Query: 520  IIDSSTTYT---------------------------LQDRIENILATM------------ 540
            + +    +                               ++  ILA+             
Sbjct: 988  LTNHPIIFDKQIDNSFFRNNQKLIDNTETWFNYNFPRPQKVWKILASKYVSFCTVTVPLY 1047

Query: 541  --------ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF-IKLKLSDIEKL 591
                    AC  ++  G+ +   EM R+ +++    N   C HGRPT    +   +I+K 
Sbjct: 1048 LFSPLFVSACRNAVMVGKTLNISEMIRIKKKLSVLQNPWNCPHGRPTIKYIINNIEIQKF 1107


>gi|312219347|emb|CBX99291.1| similar to DNA mismatch repair protein pms1 [Leptosphaeria
           maculans]
          Length = 1099

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 179/460 (38%), Gaps = 43/460 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I       KEL+ENS+DA ++ +E      G    ++ DNG 
Sbjct: 3   TIKAIEGRSVHQIQSGQVIVDLQSVCKELVENSIDAGATAIEVRFKNNGLDSIEVQDNGA 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS-RPPQNNTG 118
           G+   +      +H TSK++  DD S++ TFGFRGEAL S+ A+SH  +++ R      G
Sbjct: 63  GIAPADYETIALKHYTSKLATYDDLSSLQTFGFRGEALSSLCALSHFHIVTARASDGPKG 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+     VA   GT V V  LF+ +P R     K+ + E N +  ++   A
Sbjct: 123 TKLEFEQSGKLKDTSVVAAKQGTTVVVDTLFYNLPVRRKELEKNIKREYNKVLQLLNAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSN----- 229
                + F+ S +     K    STN N    E IS V G   I   + LN         
Sbjct: 183 CISVGIKFSVSNMMPKGKKTIAFSTNANPSTKENISNVYGAKTIAALIPLNLSFELDPSA 242

Query: 230 --------------------EITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILST 267
                                + ++G+   P     R   ++   F+N R      +   
Sbjct: 243 QPGATQSAKNWSTQEDPGSSTVRIEGHVSRPVVGEGRQTPDRQMFFVNSRPCNLPQVAKA 302

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
               Y     + + P V   + +D    DVNV P K  I   N T++   +  ++ +   
Sbjct: 303 FNEVYKSF-NITQSPFVFADIRLDTNAYDVNVSPDKRTIMLHNQTMLLENLKNALLELFE 361

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
            +  S              +     T  P    + T+T+     QE+     D +P    
Sbjct: 362 GQNQSV------PQAQLLGKKPITSTFKPPTIQNRTSTRSIDEDQESETENMDSVPEAIT 415

Query: 388 TYSEDNDPVE--ESEATHYQLGIACAQIHQNYIISQTTDG 425
             +    P+E  ++   +   G   A + + +      DG
Sbjct: 416 RSANVASPLESPDTPGANTHPGFVKASLIERFASQDAQDG 455



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 39/316 (12%)

Query: 304  SYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
            +  + R    +   I ++ + A    +  +  +S L K     +   +  +       T 
Sbjct: 750  TEKKAREEAKVAQMIAEAEEAAAQPTQVNLKRASKLFKATQKKYWTVHLERVVETDIETI 809

Query: 362  LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIACAQIHQN 416
                +    + ++  S  + L S  P      +  EE        + +       Q +  
Sbjct: 810  RRQLRNIEPIGQSVPSNLNELNSLSPEAGPTQEDPEERLSLTVTKSDFSEMRIIGQFNLG 869

Query: 417  YII-------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            +II       +  T  L I+DQHA+ E+  FE++     +T + SQ L+ P  ++L   E
Sbjct: 870  FIIAVRPPTTTSPTSDLFIIDQHASDEKYNFERL---SATTTLVSQRLVHPHPLELTAVE 926

Query: 470  CALIMEHDEDLHRLGIKAE--------------RFGPNAIAIREIPAILSKKNIPQLLRD 515
              +I+ +   L   G   E                  +   +  +P        P  L +
Sbjct: 927  EEIILANQHALTANGFVVEMNTNPNNANDNNSQDEAGHRAKLTALPMSKEVTFSPTDLEE 986

Query: 516  IIDEIIDSSTTY--------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
            ++  I+D+  +             ++  +LA+ AC  S+  G+ +Q   M  ++R M   
Sbjct: 987  LLALILDNPPSSSTSTSPHIPRPSKVRKLLASRACRSSVMIGKTLQPPRMREIVRHMGSM 1046

Query: 568  PNSSQCNHGRPTFIKL 583
                 C HGRPT   L
Sbjct: 1047 DKPWSCPHGRPTMRHL 1062


>gi|239615471|gb|EEQ92458.1| DNA mismatch repair protein [Ajellomyces dermatitidis ER-3]
          Length = 1065

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 161/399 (40%), Gaps = 29/399 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ ++      +H TSK+S  DD S++ TFGFRGEAL S+ A+S+  +++         
Sbjct: 63  GISPDDYETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSNFHIITAQAHQTPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMA 176
           +++      ++ S + VA   GTI  V +LF  +P R     K+ + E   +  ++   A
Sbjct: 123 SRLEFETSGRLKSKQVVAGQKGTITSVENLFTKLPVRRLELQKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F           +   +T  N    E IS + G   + +   L+         
Sbjct: 183 CVSTGVRFNVKNQMPKGKSVLVFATQSNATTKENISNIYGAKTLLSLTPLDLELEFQPSG 242

Query: 226 ----------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                      + N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 243 TGRCLIGGGSNEGNKILVQGHISKPVFGEGRQTPDRQMFFVNSRPCALPQIAKAFNEVYK 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  S+ +   ++  + 
Sbjct: 303 SF-NISQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKTSLTELFERQDQTV 361

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
               + +  S      +        +     + E    +
Sbjct: 362 PHCQASRKQSMLQYPQSTNIPSSLGSEKPAKSSEPRQSE 400



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 30/196 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            + + +     D + I+DQHA+ E+  FE+++     T + +Q L+ P+ ++L   E  +I
Sbjct: 829  NPSTLPGHKHDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKTLELTAVEEEII 885

Query: 474  MEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
            +++   L + G   E         G     +  +P           L ++I  + ++   
Sbjct: 886  IDNLPALEKNGFVVEVDRSGNEPIGRRC-KLTSLPLSKEVVFNTGDLEELIVLLGETPQI 944

Query: 527  YT-------------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             T                      ++  + A  AC  SI  G+ + + +M+R++R M   
Sbjct: 945  QTQSAPSPTSGSDVFAGKYIPRPSKVRKMFAMRACRSSIMIGKTLTTKQMDRVVRHMGMI 1004

Query: 568  PNSSQCNHGRPTFIKL 583
                 C HGRPT   L
Sbjct: 1005 DRPWNCPHGRPTMRHL 1020


>gi|261199400|ref|XP_002626101.1| DNA mismatch repair protein Pms1 [Ajellomyces dermatitidis
           SLH14081]
 gi|239594309|gb|EEQ76890.1| DNA mismatch repair protein Pms1 [Ajellomyces dermatitidis
           SLH14081]
          Length = 1065

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 161/399 (40%), Gaps = 29/399 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ ++      +H TSK+S  DD S++ TFGFRGEAL S+ A+S+  +++         
Sbjct: 63  GISPDDYETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSNFHIITAQAHQTPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMA 176
           +++      ++ S + VA   GTI  V +LF  +P R     K+ + E   +  ++   A
Sbjct: 123 SRLEFETSGRLKSKQVVAGQKGTITSVENLFTKLPVRRLELQKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F           +   +T  N    E IS + G   + +   L+         
Sbjct: 183 CVSTGVRFNVKNQMPKGKSVLVFATQSNATTKENISNIYGAKTLLSLTPLDLELEFQPSG 242

Query: 226 ----------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                      + N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 243 TGRCLIGGGSNEGNKILVQGHISKPVFGEGRQTPDRQMFFVNSRPCALPQIAKAFNEVYK 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  S+ +   ++  + 
Sbjct: 303 SF-NISQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKTSLTELFERQDQTV 361

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
               + +  S      +        +     + E    +
Sbjct: 362 PHCQASRKQSMLQYPQSTNIPSSLGSEKPAKSSEPRQSE 400



 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 30/196 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            + + +     D + I+DQHA+ E+  FE+++     T + +Q L+ P+ ++L   E  +I
Sbjct: 829  NPSTLPGHKHDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKTLELTAVEEEII 885

Query: 474  MEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
            +++   L + G   E         G     +  +P           L ++I  + ++   
Sbjct: 886  IDNLPALEKNGFVVEVDRSGNEPIGRRC-KLTSLPLSKEVVFNTGDLEELIVLLGEAPQI 944

Query: 527  YT-------------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             T                      ++  + A  AC  SI  G+ + + +M+R++R M   
Sbjct: 945  QTQSAPSPTSGSDVFAGKYIPRPSKVRKMFAMRACRSSIMIGKTLTTKQMDRVVRHMGMI 1004

Query: 568  PNSSQCNHGRPTFIKL 583
                 C HGRPT   L
Sbjct: 1005 DRPWNCPHGRPTMRHL 1020


>gi|327355152|gb|EGE84009.1| DNA mismatch repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1067

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 161/399 (40%), Gaps = 29/399 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 5   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGK 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ ++      +H TSK+S  DD S++ TFGFRGEAL S+ A+S+  +++         
Sbjct: 65  GISPDDYETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSNFHIITAQAHQTPKA 124

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMA 176
           +++      ++ S + VA   GTI  V +LF  +P R     K+ + E   +  ++   A
Sbjct: 125 SRLEFETSGRLKSKQVVAGQKGTITSVENLFTKLPVRRLELQKNIKREYGKVLGLLHAYA 184

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F           +   +T  N    E IS + G   + +   L+         
Sbjct: 185 CVSTGVRFNVKNQMPKGKSVLVFATQSNATTKENISNIYGAKTLLSLTPLDLELEFQPSG 244

Query: 226 ----------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                      + N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 245 TGRCLIGGGSNEGNKILVQGHISKPVFGEGRQTPDRQMFFVNSRPCALPQIAKAFNEVYK 304

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  S+ +   ++  + 
Sbjct: 305 SF-NISQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKTSLTELFERQDQTV 363

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
               + +  S      +        +     + E    +
Sbjct: 364 PHCQASRKQSMLQYPQSTNIPSSLGSEKPAKSSEPRQSE 402



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 30/196 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
            + + +     D + I+DQHA+ E+  FE+++     T + +Q L+ P+ ++L   E  +I
Sbjct: 831  NPSTLPGHKHDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKTLELTAVEEEII 887

Query: 474  MEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
            +++   L + G   E         G     +  +P           L ++I  + ++   
Sbjct: 888  IDNLPALEKNGFVVEVDRSGNEPIGRRC-KLTSLPLSKEVVFNTGDLEELIVLLGETPQI 946

Query: 527  YT-------------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
             T                      ++  + A  AC  SI  G+ + + +M+R++R M   
Sbjct: 947  QTQSAPSPTSGSDVFAGKYIPRPSKVRKMFAMRACRSSIMIGKTLTTKQMDRVVRHMGMI 1006

Query: 568  PNSSQCNHGRPTFIKL 583
                 C HGRPT   L
Sbjct: 1007 DRPWNCPHGRPTMRHL 1022


>gi|154275042|ref|XP_001538372.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414812|gb|EDN10174.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1068

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 96/451 (21%), Positives = 177/451 (39%), Gaps = 43/451 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ ++      +H TSK+S  DD S++ TFGFRGEAL S+ A+S+  +++         
Sbjct: 63  GISPDDYETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSNFHIITAQAHEVPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
           +++      K+ S   VA   GT   V +LF  +P R     K+ + E   +  ++   A
Sbjct: 123 SRLEFEISGKLKSTHTVAGQKGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK------- 227
                V F           +   +T  N    E IS + G   +     L+ +       
Sbjct: 183 CVSTGVRFNVKNQMPKGKSVVVFATKSNTSTSENISNIYGAKILLALTPLDLELEFKPSG 242

Query: 228 ------------SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                        N+I +QG+   P F   R   ++   F+N R      I       Y 
Sbjct: 243 MGKRLIGAGTNDPNKIFVQGHISRPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYK 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P +    ++D    DVNV P K  I   +   +   +  S+           
Sbjct: 303 SF-NISQSPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKVSL----------- 350

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            + L ++   +  Q            +S TN  +  F+ +  + ++    S +   ++ N
Sbjct: 351 -TELFERQDQTVPQSQVSGKQSMLQHSSGTNIPK--FISKKSVESSAPQHSKEIGEADGN 407

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTD 424
           +  +E  A    +          Y I +  +
Sbjct: 408 NEEDEQRAMRAFVQRFTGNSTTAYDIPEIPE 438



 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 32/203 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
                  S   D + I+DQHA+ E+  FE+++     T + +Q L+ P+I+ L   E  +I
Sbjct: 829  DPRAFPSHKNDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKILTLTAVEEEII 885

Query: 474  MEHDEDLHRLGIKAE--RFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +++   L + G   E  R G   I     +  +P         Q L ++I  + +S  T 
Sbjct: 886  IDNLPALEKNGFVVEVDRSGDEPIGRRCKLTSLPLSKEMVFDTQDLEELIVLLGESPQTQ 945

Query: 528  ----------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
                                      ++  + A  AC  SI  G+ + + +M+R++R M 
Sbjct: 946  SASSPSSSDSVLTPTTLGSKYIPRPSKVRKMFAMRACRSSIMIGKTLTNKQMDRVVRHMG 1005

Query: 566  KNPNSSQCNHGRPTFIKL-KLSD 587
                   C HGRPT   L  L +
Sbjct: 1006 MIDKPWNCPHGRPTMRHLMSLGE 1028


>gi|150404121|gb|ABR68374.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404143|gb|ABR68385.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404191|gb|ABR68409.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 139/253 (54%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++  I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVFISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGFSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|190345899|gb|EDK37866.2| hypothetical protein PGUG_01964 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 859

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 187/467 (40%), Gaps = 32/467 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ +    + +I +G++I      +KEL+EN++D+ S++++   +  G  + +I D+G
Sbjct: 1   MPIKNIDSTEVQRITSGQVIVDLVSVVKELVENAIDSGSTKIDVTFSDSGLDYIKIEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NT 117
            G+  E+      RH TSK+   +  + + T GFRGEA+ SI +V++LT+ +   QN   
Sbjct: 61  SGIEEEDFEYVCLRHHTSKLVSFEGLAQVSTLGFRGEAMSSICSVANLTISTCTKQNYPR 120

Query: 118 GAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRR 174
            +Q+          + + V    GT+V V  LF  +P R     K+ + E     + +  
Sbjct: 121 ISQLTFDNMGRLTGTEKSVGGLRGTVVTVTSLFNALPVRRKTLEKNIKREFQKAVNNLIC 180

Query: 175 MAIAYPKVSFTFSTI----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN- 229
             + +P++ FT   I    K          +  +    +  V G +       ++ ++  
Sbjct: 181 YILIHPEIRFTVYNITAAKKKQMMLGTQGGSKADIKSCLLNVYGSNGTYGLESVSLEAKE 240

Query: 230 ------------------EITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIR 269
                             +I  +G     +F  G +  ++ Y+++N R V+ +  + T+ 
Sbjct: 241 LEVKFKLNAGDLPVLKRLDIKFEGMISNCSFGMGRSAGDRQYIYLNKRPVESRRFIKTVN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y       ++PVVVL + +D   +D+NV P K  +   N  ++ + +   + K    +
Sbjct: 301 EVYRSF-NTVQFPVVVLNIVLDGDFLDINVTPDKRTVMIHNEDVLNDVLRHELTKFYESE 359

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                         S   D A +    +  +SL         + +   T +     +   
Sbjct: 360 DTQIPVNSDSWESPSQSIDRAKRKEDYEQPSSLKRYHLAEDEELDADDTRNTENELNDIG 419

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
               +   + E               +  + + T+ +  ++ + +HE
Sbjct: 420 ENVEEHKSQEEDQMEHDESYEEDSVNDREMIENTNNVDEMENNESHE 466



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 11/195 (5%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDG--LVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
               +       Q +  +I+     G  L IVDQHA+ E+  FE++    ++T   SQ+L
Sbjct: 653 SKKDFTKMQVVGQFNLGFILVTLNGGNNLFIVDQHASDEKYNFERL--ANSTTMFHSQSL 710

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLL 513
           + P  ++L   +   ++ + E     G       +    + + +  +P   +        
Sbjct: 711 VVPRNMELNALDEMTVLANLEVFKTNGFGLKVDEDEAPGHRVKLTSLPVSRTTVFDESDF 770

Query: 514 RDII---DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            ++I   ++    +  +    +I  ILA+ +C  SI  G+ + +  M +++  +      
Sbjct: 771 HELIHLTNQAGSINNKHVKCSKIRTILASRSCRSSIMIGQPLSTSTMKKVVHNLSHLDKP 830

Query: 571 SQCNHGRPTFIKLKL 585
             C HGRPT   L  
Sbjct: 831 WNCPHGRPTMRHLTE 845


>gi|66810241|ref|XP_638844.1| MutL DNA mismatch repair protein [Dictyostelium discoideum AX4]
 gi|74854421|sp|Q54QA0|PMS1_DICDI RecName: Full=Mismatch repair endonuclease pms1
 gi|60467455|gb|EAL65478.1| MutL DNA mismatch repair protein [Dictyostelium discoideum AX4]
          Length = 1022

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 158/391 (40%), Gaps = 52/391 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + ++ IN I +G++I   SIA+KELIENS+DA ++ VE  +   G+ F ++ DNG G
Sbjct: 2   IKAIDKESINNICSGQVIFDLSIAVKELIENSIDAGATTVEIRLKEYGEEFIEVIDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          +HCTSK+    D  +I T+GFRGEAL S+ ++S+  + +R     T  +
Sbjct: 62  VEPSNFVALTMKHCTSKLESFSDLLSIETYGFRGEALSSLCSLSNCIITTRTKNQVTAQR 121

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIA 178
           +    E KI +  PVA   GT V++ +LF  +P R    K + + E   +  +++  A+ 
Sbjct: 122 LVFDKEGKIQTQTPVAREVGTTVQLSNLFKGLPVRYQEFKRNIKKEYAKLLTILQAYALI 181

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                 T      KS R  +   ++     + +  V G     +  E     +   + G 
Sbjct: 182 STNTRITCYNQAGKSPRSCVLSTTSGSTIRDNLINVFGTKMSQSLDEFTASDSLFKVNGL 241

Query: 237 TGI------------------------------------------PTFNRGNANQFYVFI 254
                                                         + +R  A++ + F+
Sbjct: 242 ISKIGIGSGTGQSISNSSSSSSQSSSQLSSSSSSSSSSQSSQLSIGSLSRSCADRQFFFV 301

Query: 255 NGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           N R  +   +   I + Y      G YPVV+  +E+     DVNV P K  I  +    +
Sbjct: 302 NSRPFEHSKLAKEINSLYQSFHKRGSYPVVIFNIEMPTNNYDVNVTPDKRTIFIQKEQQL 361

Query: 315 RNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
              I       +     +  SV     +  F
Sbjct: 362 LLLITDG----LKTMWETAQSVFDTNQLGQF 388



 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 102/242 (42%), Gaps = 12/242 (4%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLG 407
            +P+     + +   +  ++ + +   +        S+ N    E E        +++  
Sbjct: 755 SIPQLDGKFSTSLGGIGAKQQQKAATQVTSQLQQQPSQTNQKTAEEELTKFFKKEYFKQM 814

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
           I   Q +  +II++  + L I+DQHAA E+  FE + +   S+  +   L    + DL  
Sbjct: 815 IVIGQFNLGFIIAKLGNDLFIIDQHAADEKYNFEILSKSVESSINSQPLLKPDTLSDLTS 874

Query: 468 GECALIMEHDEDLHRLGIK--AERFGPNAIAIR--EIPAILSKKNIPQLLRDIIDEIIDS 523
            E  +I+E+ +   + G K   +   P    I+    P I  +    + + + I  I +S
Sbjct: 875 EEELIIIENVDLFKKNGFKFIIDHDAPTRFKIKLSAFPIIHGQSFGIKDIYEWIFMIKES 934

Query: 524 STTYTLQD--RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           S   ++    R+ ++LA+ AC  SI  G  +   EM  +L  +    N   C HGRPT  
Sbjct: 935 SIPGSVNKIPRLNSLLASKACRKSIMVGTTLTHKEMKDVLNNLSTLDNPWCCPHGRPTMR 994

Query: 582 KL 583
            L
Sbjct: 995 HL 996


>gi|68071917|ref|XP_677872.1| mismatch repair protein [Plasmodium berghei strain ANKA]
 gi|56498149|emb|CAI04678.1| mismatch repair protein pms1 homologue, putative [Plasmodium
           berghei]
          Length = 1075

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 198/485 (40%), Gaps = 23/485 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ + ++ I+ I + ++I   S  +KEL+ENS+DA ++ ++  +   G    ++ DNG
Sbjct: 1   MKIKSIGDESIHNICSSQVIFTLSNVVKELVENSIDAGATEIKVKLVENGIKLIEVNDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI-HTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKIS  DD  NI +T GFRGEAL S+  +S L + ++  +   
Sbjct: 61  NGIKKINFENVCARHATSKISEFDDIHNILNTLGFRGEALNSLCMLSDLYISTKHDEFEH 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
           G  +      K+    P+A   GT V   ++F  IP R    +K+ + + + +  ++++ 
Sbjct: 121 GYLLKFDKFGKLLHEEPIARLRGTTVSCENIFKNIPIRKKDLIKNIKSQLSDLLSLMQQY 180

Query: 176 AIAYPKVSFTFSTIKSNR-----YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           AI Y ++ F    + + +       M   + + +  +    + G+  I N ++LN K+  
Sbjct: 181 AIIYHEIKFMIFNVVTQKGCTKNMNMLITNGSDDIKKNFYSIFGKKNIGNLIDLNIKNEN 240

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
            +++GY       R + +  + ++N R +     ++ I            YP+++  +  
Sbjct: 241 WSVKGYISDSNSGRRDKDLQFYYMNSRPIHVIKNVNKIINTIYREFNSRLYPIIICNILS 300

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI------------NKKGISTSSVLS 338
           D + +D+NV P K  + F     +   I   + K +            +      ++ + 
Sbjct: 301 DSKNIDINVTPDKREVFFTFENELCEEIKTELIKLLTPKTSNFVDTQIDDYFFVKNNRII 360

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           K   +   +    +T   +     T  +E   ++     ++DL  +         +  +E
Sbjct: 361 KNEETKNEETKNEETKNEETKNEETKNEESTNIERPLFESDDLSYTSINYKKIVKNEYKE 420

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER-LIFEKMRQDFNSTKITSQTL 457
            +  +               +    +     +    +++   FE   +++ +  I  +  
Sbjct: 421 KKENYNIFRKEVNGNEDIENLYFNGEKQKKYNNKMDNQKDKNFEDTEKNYINNDIKIKKE 480

Query: 458 LTPEI 462
                
Sbjct: 481 FEKXY 485



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 58/228 (25%)

Query: 417  YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
            YI  +    L I+DQHAA E+  FEK  + F    + SQ L+    ++L   +  +I ++
Sbjct: 801  YIERKNNYALFIIDQHAADEKSNFEKYNKIFT---MKSQKLINKIELELSPAQIHIIEKN 857

Query: 477  DEDLHRLGIKAERFGPN--------------------------AIAIREIPAILSKKNIP 510
                 R G + E                                + +  +P    K    
Sbjct: 858  FVIFLRNGFEIEIIDEPINKKRKINNDENMDNNIINEEALMEMKVYLLSLPVFNGKILEV 917

Query: 511  QLLRDIIDEIIDSSTTYT---------------------------LQDRIENILATMACY 543
                 ++  + ++   +                               ++  ILA+ AC 
Sbjct: 918  VDFMSLLYHLSNNPIIFDKQIDGSFLKNNKKLTDNTEMWFNYNFPRPQKVWKILASKACR 977

Query: 544  GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF-IKLKLSDIEK 590
             ++  G+ +   EM  + +++    N     HGRPT    +   +I+K
Sbjct: 978  NAVMVGKTLNISEMITIKKKLSVLKNPWN-PHGRPTIKYIINNIEIQK 1024


>gi|218197517|gb|EEC79944.1| hypothetical protein OsI_21533 [Oryza sativa Indica Group]
          Length = 258

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/184 (40%), Positives = 118/184 (64%), Gaps = 5/184 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++I+QIAAGE++ERP+ A++EL++N+LDA + +V   +  GG     + D+G 
Sbjct: 11  PIRDLPDELISQIAAGEVVERPASAVRELVDNALDAGARQVTVRLLAGGVRLIAVEDDGC 70

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  EE+P+A++RH TSKI++  D  ++ T GFRGEAL +I +VS + L+SR  +  T  
Sbjct: 71  GIPPEELPVALRRHATSKITNLHDLESVATMGFRGEALAAIASVSEMALLSRTEEQPTAF 130

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +     ++   RP A + GT VEV++LFF+ PAR  FLK++  E     + +RR A+  
Sbjct: 131 LLDARSGEL---RPAARSRGTTVEVKELFFSTPARRKFLKTDATELAHCIEAVRRHALDR 187

Query: 180 PKVS 183
           P V 
Sbjct: 188 PDVG 191


>gi|332814964|ref|XP_003309411.1| PREDICTED: PMS1 protein homolog 1 isoform 2 [Pan troglodytes]
          Length = 770

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 192/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +    +I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGRILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKVESSGKNYSNVDTSIIPFQNDMHNDESGKNTDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  SQT       
Sbjct: 419 GHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 458


>gi|255713860|ref|XP_002553212.1| KLTH0D11550p [Lachancea thermotolerans]
 gi|238934592|emb|CAR22774.1| KLTH0D11550p [Lachancea thermotolerans]
          Length = 697

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/674 (18%), Positives = 248/674 (36%), Gaps = 97/674 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL++ +   + +   I+  + A++ L++NS+DA +S +   +    +  F + DNG G
Sbjct: 5   IRKLTDDVAKSLKSSASIDCITTALRLLLQNSIDAGASHITVFLDLPNR-VFTVADNGLG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           MT  ++    Q++ TSK++D  D  ++ T+GF+G ++  I  V+ + ++S+    ++G  
Sbjct: 64  MTRRDLTCFGQQNYTSKLTDVQDVDHLKTYGFKGCSIFEISNVAKIRVISKHESASSGWM 123

Query: 121 I----AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN--FLKSEQVETNLITDVIRR 174
                              +  GT+V V D F  +P RL      +     + +   I  
Sbjct: 124 KELGGRSEDINNPITEIEKLEKGTVVTVDDFFHNLPVRLESLERPTSGELLDRVRFDIFE 183

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNG---------NFPERISQVIGEDFINNAV-EL 224
           + + +P+V    +T  +      F  T G              +  V G +  N+ +  +
Sbjct: 184 ILVVHPEVEICINTEGACAGHSKFLETRGIKRSLPETEKLLLCLQDVFGLEGENSTLKPV 243

Query: 225 NEKSNEITLQGYTG-IPTFNRGNANQFYVFINGRTVQDKFILSTI-------RTAYAETI 276
           + +  +  + G    +PTF+        +++NG   +D  +L  I       R  + +T 
Sbjct: 244 HAQFTDYVVDGLISEVPTFHIKI---QLLYVNGLKCEDSALLRPISRAFRNARNCWNQTH 300

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN--------- 327
               Y + VL + +   +  +        +  +   II   I + I+   N         
Sbjct: 301 GRSGYEMHVLKISMPRCKAKILGGERSLGLGTKQYQIIHALIFKIIESVFNVKLNQYTAI 360

Query: 328 ---------KKGISTSSVLSKKMISSFHQDN-----APKTHLPKYATSLTNTQEKLFLQE 373
                          SS  S +  S F +        PK   P+++ +L +T   +  ++
Sbjct: 361 AHRPSKFNTSCTAWKSSNYSLRSASGFEEGKIPALKKPKPEPPEHSRNLKSTSTDIDFKK 420

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN----------YIISQTT 423
              +      S+       +      E    +      ++             Y  +   
Sbjct: 421 LIQNAGCRGSSEASQEPIMSPFSTLQEHFVDRSLFKRFRVVNQVDKKFVLLKSYGSNPDI 480

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT---PEIIDLLEGECALIMEHDEDL 480
             LV++DQHAA ER+ +E +   F    +TS  L        +DL   E  +  +   +L
Sbjct: 481 LSLVLLDQHAADERIKYESLLNGFIWGMLTSPHLHIRKAHIEVDLSPKEYHIFQQCKNEL 540

Query: 481 HRLGIKAE----RFGPNAIAIREIPAILSKKNIPQLLRDIIDE----------------- 519
           H+ GI  E        + + +  +P  L  ++I  L   II                   
Sbjct: 541 HQWGILFEGKPVAKPRHLVKLTALPDPLQHRSIEALKNGIIQHACDLRHLRKNHFRSQST 600

Query: 520 ----------IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
                         +   ++   I + L + AC  +I  G  +   E   L+  + K  N
Sbjct: 601 QKLESGAAQNFAWWNYLNSIPTMITDSLKSKACRSAIMFGDYLSPQETTLLVEMLGKCRN 660

Query: 570 SSQCNHGRPTFIKL 583
              C HGRP+ + +
Sbjct: 661 PFYCAHGRPSLVPI 674


>gi|150404187|gb|ABR68407.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 141/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    + +G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGSGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|196000426|ref|XP_002110081.1| hypothetical protein TRIADDRAFT_21244 [Trichoplax adhaerens]
 gi|190588205|gb|EDV28247.1| hypothetical protein TRIADDRAFT_21244 [Trichoplax adhaerens]
          Length = 832

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 177/420 (42%), Gaps = 32/420 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+++S+K ++QI +G++I   + A+KEL+ENS+DA +++V+  +   G    +++DNG 
Sbjct: 7   TIKQISQKHVHQICSGQVILNLAAAVKELVENSVDAGANQVDVRLKDYGADTVEVSDNGS 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  ++  +    H TSK+   DD   + TFGFRGEAL S+  + ++ + +R      G 
Sbjct: 67  GIHPDDFEVLALMHHTSKLKEYDDLIGVETFGFRGEALSSLCGLCNVAITTRHKSQPNGT 126

Query: 120 QIAISGEKISSVRPVAM-NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           +I      I   +       GT V ++ LF T+P R   F+++ + E N +  V++  AI
Sbjct: 127 KIEYDHRGIVKSKSACARQQGTTVTLQGLFSTLPVRHKEFVRNIKREFNKMIHVLQSYAI 186

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-------- 227
               +  T +    K+ R  +    +N    E I  + G   +++ +             
Sbjct: 187 ISIGLRLTCNNQPVKNKRITVLSCQSNKGLKENIVDIFGPKQVSSLIPFVTHAPSESDCE 246

Query: 228 ----------SNEITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                      +  ++ G       +  R   ++ + FIN R          I   Y   
Sbjct: 247 SMGINPKLIDMSLFSISGLISKCDHSSGRTGNDRQFFFINKRPCDLIKASRVINETYHMY 306

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
               +YP   L + +    VDVNV P K  I  +N   +   I  S+   +       SS
Sbjct: 307 -NRHQYPFFALDISLRKGTVDVNVTPDKRQILMQNEKALLTVIKASL---VRMYDPIASS 362

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
               + I++    +       ++     N  E   + E  ++    L +D+   SE ++ 
Sbjct: 363 YEISRGITTGATTSTQSAAADQHDNE--NNDEIQIISEKDINNKKHLTNDECELSEVSNN 420



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
           S+     + D   + +N+   E     +Q      Q +  +II++    L I+DQHA+ E
Sbjct: 608 SSFHATIAPDNNTAAENELRREISKDMFQEMEIIGQFNLGFIIARHNQDLFIIDQHASDE 667

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP---- 492
           +  +E ++ + N      Q L+ P+ + L   E  ++M++     + G            
Sbjct: 668 KYNYEYLQLNTNLKG---QQLIQPKHLFLTPTEEEVLMDNVNIFEKNGFSFSIDPDAPPT 724

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
             I +  +P         + ++++I  + D          +  + AT +C  SI  G  +
Sbjct: 725 KRIKMTSVPYGRGCIFNEEDVQEMIMMLTDMPGVMCRPTTVSRMFATRSCRRSIMIGTAL 784

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            + +M ++L+ M +  +   C HGRPT   L
Sbjct: 785 NTSQMKKILKHMGEIEHPWNCPHGRPTMRHL 815


>gi|222619908|gb|EEE56040.1| hypothetical protein OsJ_04833 [Oryza sativa Japonica Group]
          Length = 1120

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 112/541 (20%), Positives = 215/541 (39%), Gaps = 45/541 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L E ++N+IAAGE+I+RPS A+KELIENSLDA +S V   +  GG    Q++D+G 
Sbjct: 17  RIRRLEESVVNRIAAGEVIQRPSSAVKELIENSLDAGASSVSVAVKDGGLKLIQVSDDGH 76

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+             T K        + +G  G+AL S+  V H+T+ +       G ++
Sbjct: 77  GIR------------THK--------NRWGSEGKALASMTYVGHVTVTTITEGQLHGYRV 116

Query: 122 AISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     + +  +P A   GT V V +LF+ + AR   L++   +   I D I R A+ + 
Sbjct: 117 SYRDGVMENEPKPCAAVKGTQVMVENLFYNMVARKKTLQNSNDDYPKIVDFISRFAVHHI 176

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-----ITLQG 235
            V+F+     +NR  ++  ST+    + I  V G   + + +E+     +       + G
Sbjct: 177 NVTFSCRKHGANRADVHSASTSSRL-DAIRSVYGASVVRDLIEIKVSYEDAADSIFKMDG 235

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y     +         +FIN R V    +   I   Y+ T+P    P + + + +    V
Sbjct: 236 YISNANYVAKKITMI-LFINDRLVDCTALKRAIEFVYSATLPQASKPFIYMSIHLPSEHV 294

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVN+HP K  +   N   I   I  +I++ +     +         +S   Q N  K  +
Sbjct: 295 DVNIHPTKKEVSLLNQERIIETIRNAIEEKLMNSNTTRIFQTQALNLSGIAQANPQKDKV 354

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
            + +       +K+ + +   +          TY        E +            + +
Sbjct: 355 SEASMGSGTKSQKIPVSQMVRTDPRNPSGRLHTYWHGQSSNLEKK-------FDLVSVSK 407

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             +  Q        +     E    +++                 E +++ E    ++ E
Sbjct: 408 ELMYQQALCRFGNFNAIQLSEPAPLQELLVMALKDDELMSDEKDDEKLEIAEVNTEILKE 467

Query: 476 HDEDLHR-LGIKAERFGPNAIAIREIPAILSK-----KNIPQLLRDIIDEIIDSSTTYTL 529
           + E ++    I  ++ G     +  +P +L +       +P+ +  + +++         
Sbjct: 468 NAEMINEYFSIHIDQDGK----LTRLPVVLDQYTPDMDRLPEFVLALGNDVTWDDEKECF 523

Query: 530 Q 530
           +
Sbjct: 524 R 524


>gi|115447025|ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group]
 gi|50726475|dbj|BAD34084.1| putative PMS2 postmeiotic segregation increased 2 [Oryza sativa
           Japonica Group]
 gi|113536823|dbj|BAF09206.1| Os02g0592300 [Oryza sativa Japonica Group]
 gi|218191082|gb|EEC73509.1| hypothetical protein OsI_07875 [Oryza sativa Indica Group]
 gi|222623151|gb|EEE57283.1| hypothetical protein OsJ_07338 [Oryza sativa Japonica Group]
          Length = 923

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 17/364 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR + +  +++I +G++I   S A+KEL+ENSLDA ++ VE  +   G+  F + DNG G
Sbjct: 9   IRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSFTVADNGTG 68

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++         +H TSKISD  D +++ TFGFRGEAL S+ A+  LT+ +R      G +
Sbjct: 69  ISPTNFQALALKHHTSKISDFGDLASVATFGFRGEALSSLCALGKLTVETRTKDEPVGTR 128

Query: 121 IAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +  +   + +       P GT V V  LF T+P R   F ++ + E   +  ++   A+ 
Sbjct: 129 LEFAHSGVVTGERKMARPVGTAVTVEKLFSTLPVRSKEFSRNIRKEYGKVISLLNAYALI 188

Query: 179 YPKVS--FTFSTIKSNRYKMNFQSTNGNFPERISQVIG-EDFINNAVELNEKSNEITLQG 235
              V    T +  K+++  +     + +  + I  V G   F          S    + G
Sbjct: 189 AKGVRLVCTNTVGKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPFNVTISEGCQVDG 248

Query: 236 YTGI--PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           +     P   R + ++ + ++NGR V    +   +   Y  +    +YPV VL   I   
Sbjct: 249 FLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSS-NAKQYPVAVLNFCIPTT 307

Query: 294 QVDVNVHPAKSYIRFRNPTIIR-------NFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
             DVNV P K  I F +   I          +    Q + +   +          I    
Sbjct: 308 SYDVNVAPDKRKIFFSSEHAILLSLREGIENLYCPQQCSFSINSVEDPGKEMDPAIDGSD 367

Query: 347 QDNA 350
           +D  
Sbjct: 368 EDMC 371



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 20/201 (9%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
               +       Q +  +II +    L IVDQHAA E+  FE +     ST +  Q LL 
Sbjct: 710 SKDDFGEMEVVGQFNLGFIIGKLDQDLFIVDQHAADEKYNFENL---SQSTTLNIQPLLQ 766

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKA-ERFGP---NAIAIREIPAILSKKNIPQLLRD 515
           P  +DL   E  ++  +   + + G    E       N   I+ +P   +     Q +++
Sbjct: 767 PLRLDLSPEEEVIVSMNMSTIRKNGFVLAEDLHASPCNRYFIKAVPFSKNITFGAQDVKE 826

Query: 516 IIDEIIDSSTTYTL-------------QDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
           +I  + DS    ++               R+  +LA+ AC  S   G  +   EM ++L+
Sbjct: 827 LISMLADSQGDCSIISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILK 886

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            +    +   C HGRPT   L
Sbjct: 887 NLTGLRSPWNCPHGRPTMRHL 907


>gi|146420678|ref|XP_001486293.1| hypothetical protein PGUG_01964 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 859

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 188/467 (40%), Gaps = 32/467 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ +    + +I +G++I      +KEL+EN++D+ S++++   +  G  + +I D+G
Sbjct: 1   MPIKNIDSTEVQRITSGQVIVDLVSVVKELVENAIDSGSTKIDVTFSDSGLDYIKIEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NT 117
            G+  E+      RH TSK+   +  + + T GFRGEA+ SI +V++LT+ +   QN   
Sbjct: 61  SGIEEEDFEYVCLRHHTSKLVLFEGLAQVSTLGFRGEAMSSICSVANLTISTCTKQNYPR 120

Query: 118 GAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRR 174
            +Q+          + + V    GT+V V  LF  +P R     K+ + E     + +  
Sbjct: 121 ISQLTFDNMGRLTGTEKSVGGLRGTVVTVTSLFNALPVRRKTLEKNIKREFQKAVNNLIC 180

Query: 175 MAIAYPKVSFTFSTI----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN- 229
             + +P++ FT   I    K          +  +    +  V G +       ++ ++  
Sbjct: 181 YILIHPEIRFTVYNITAAKKKQMMLGTQGGSKADIKLCLLNVYGSNGTYGLELVSLEAKE 240

Query: 230 ------------------EITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIR 269
                             +I  +G     +F  G +  ++ Y+++N R V+ +  + T+ 
Sbjct: 241 LEVKFKLNAGDLPVLKRLDIKFEGMISNCSFGMGRSAGDRQYIYLNKRPVESRRFIKTVN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y       ++PVVVL + +D   +D+NV P K  +   N  ++ + +   + K    +
Sbjct: 301 EVYRSF-NTVQFPVVVLNIVLDGDFLDINVTPDKRTVMIHNEDVLNDVLRHELTKFYESE 359

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                       + S   D A +    +  +SL         + +   T +     +   
Sbjct: 360 DTQIPVNSDSWELPSQSIDRAKRKEDYEQPSSLKRYHLAEDEELDADDTRNTENELNDIG 419

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
               +   + E               +  + + T+ +  ++ + +HE
Sbjct: 420 ENVEEHKSQEEDQMEHDESYEEDSVNDREMIENTNNVDEMENNESHE 466



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 11/195 (5%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDG--LVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
               +       Q +  +I+     G  L IVDQHA+ E+  FE++    ++T   SQ L
Sbjct: 653 SKKDFTKMQVVGQFNLGFILVTLNGGNNLFIVDQHASDEKYNFERL--ANSTTMFHSQLL 710

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLL 513
           + P  ++L   +   ++ + E     G       +    + + +  +P + +        
Sbjct: 711 VVPRNMELNALDEMTVLANLEVFKTNGFGLKVDEDEAPGHRVKLTSLPVLRTTVFDESDF 770

Query: 514 RDII---DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
            ++I   ++    +  +    +I  ILA  +C  SI  G+ + +  M +++  +      
Sbjct: 771 HELIHLTNQAGSINNKHVKCSKIRTILALRSCRSSIMIGQPLSTSTMKKVVHNLSHLDKP 830

Query: 571 SQCNHGRPTFIKLKL 585
             C HGRPT   L  
Sbjct: 831 WNCPHGRPTMRHLTE 845


>gi|134056274|emb|CAK96402.1| unnamed protein product [Aspergillus niger]
          Length = 869

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 159/405 (39%), Gaps = 35/405 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L    I+QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG G
Sbjct: 9   IHTLQ---IHQIQSGQVIVDLCSVAKELVENSLDAGATSIEIRFKNNGLDLIEVQDNGSG 65

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGA 119
           ++ +       +H TSK+S  +D + +HTFGFRGEAL S+ A+S   + +          
Sbjct: 66  ISPDNYANVALKHYTSKLSSYEDLTTLHTFGFRGEALSSLCALSDFRITTAQANQAPKAT 125

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           ++      K+   + VA   GT   V  +F  +P R     K+ + E   + +++   A 
Sbjct: 126 RLDFEPSGKLKKTQIVAGQKGTTASVESIFKGLPVRRRELEKNIKREYGKVLNLLHAYAC 185

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDF------------------ 217
               V F+          +   STNGN    E I+ V G                     
Sbjct: 186 VSTGVRFSVRNSVGKTKNVVVFSTNGNQTTKENIANVYGAKTLLALIPLDLALEFEPSAA 245

Query: 218 INNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
               +  + + N++T++G+   P F   R   ++   F+N R      I       Y   
Sbjct: 246 AGRRITGSGELNKLTVRGHVSKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF 305

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
             + + P V     +D    DVNV P K  I   +   + + +    ++++ +   S+  
Sbjct: 306 -NVSQSPFVFADFHMDTNAYDVNVSPDKRTILLHDAGALIDSL----KESLVQLFESSDQ 360

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
            + + ++         K  L    T   +         +  + +D
Sbjct: 361 TVPQSLVVGSKPAPTLKQRLGSLQTQTQSPNRPAVEDADSSAADD 405



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 94/259 (36%), Gaps = 33/259 (12%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-EATHYQLGIACAQ 412
            L K  + L   QE L   E     +              + +  +     +       Q
Sbjct: 569 SLSKIRSQLGQLQESLRRWEEHHGPSQSEDETAAPQETAEERLSLTVSKDDFANMRIVGQ 628

Query: 413 IHQNYIISQT------------TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
            +  +I++               D L I+DQHA+ E+  FE+++     T + +Q L+ P
Sbjct: 629 FNLGFILATRSSTDDSGPGSSAKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQP 685

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSKKNIPQLL 513
           + +DL   E  +++E+   L + G   E         G     +  +P         + L
Sbjct: 686 KRLDLTAVEEEIVIENQAALEKNGFIVEVDESGDEPIGRRCKLV-SLPLSKEVVFGVRDL 744

Query: 514 RDIIDEIIDSSTTY---------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
            ++I  + ++ T               ++  + A  AC  SI  G+ +   +M ++++ M
Sbjct: 745 EELIVLLSETPTNAARSATGMYIPRPSKVRKMFAMRACRSSIMIGKTLTVKQMQKVVQNM 804

Query: 565 EKNPNSSQCNHGRPTFIKL 583
                   C HGRPT   L
Sbjct: 805 GTIDKPWNCPHGRPTMRHL 823


>gi|332209584|ref|XP_003253894.1| PREDICTED: PMS1 protein homolog 1 isoform 3 [Nomascus leucogenys]
          Length = 770

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 99/412 (24%), Positives = 178/412 (43%), Gaps = 33/412 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAIDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           +  K   +   F++  +   +     TS+   Q  +   E+  + +D L   
Sbjct: 359 VLSKTAETDVLFNKMESSGKNYSNVDTSIIPFQNDMHNDESGKNADDCLKHQ 410


>gi|307128734|ref|YP_003880764.1| putative DNA mismatch repair protein MutL [Candidatus Sulcia
           muelleri CARI]
 gi|306483196|gb|ADM90066.1| putative DNA mismatch repair protein MutL [Candidatus Sulcia
           muelleri CARI]
          Length = 363

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 178/336 (52%), Gaps = 11/336 (3%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M   I+ LS+ + N+IA+G++I  PS  +KE++ENS+DA +  ++ ++  GGK    I D
Sbjct: 1   MTDVIKFLSKNVSNKIASGDVIHNPSSILKEILENSIDAYAKNIKIILLNGGKDRIHIID 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G GM+  +   + +R+ TSKI+  +D  N+ T GFRGEAL  I +V+ + + +R  +++
Sbjct: 61  DGIGMSKNDAIKSFERYSTSKINKVEDLLNLSTKGFRGEALSYITSVTQIEMDTRYIESD 120

Query: 117 TGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
            G ++ I   K+     P+AM+ G  + ++++F+ IP +  FLKS  +E   I +   ++
Sbjct: 121 IGIRLIIENGKLKYKPLPIAMDKGCSICIKNIFYNIPVKRKFLKSSNLELKNIINEFYKI 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
            +++  ++F     K   + +       +  +RI ++ G+      +++ + +N + +QG
Sbjct: 181 VLSHNDLNFILKNNKKIFFFLK----KSSHKKRIIKIFGKKIKKYLIKIKKTTNLVKIQG 236

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
           Y     +        Y+F+N R +++K + + I  +Y         P   + L +DP   
Sbjct: 237 YITNTKYFNLKK--QYIFLNKRFIKNKNLHNAIINSYEGLTKKKYNPSYFIFLTMDPSLF 294

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           ++N+ P K+ ++F +   + N I   I++ +    I
Sbjct: 295 NINISPYKTKVKFYDEIYLCNKISTLIKEYLGINNI 330


>gi|167525904|ref|XP_001747286.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774121|gb|EDQ87753.1| predicted protein [Monosiga brevicollis MX1]
          Length = 871

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 165/381 (43%), Gaps = 32/381 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R L    +++I +G+++   +IA+KEL+EN+ DA +++++  I   GK+  ++TDNG G+
Sbjct: 6   RALDAGSVHRICSGQVVLSLAIAVKELLENAADAHATKIDIKIREYGKTLIEVTDNGSGV 65

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
             E       +H TSK+   DD  ++ TFGFRGEAL S+ A+S L++++       G  +
Sbjct: 66  HQENFEKIALKHYTSKLQDFDDLESVMTFGFRGEALSSLCAISELSVVTSDNDEGWGHAL 125

Query: 122 AISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIRRMAIAY 179
             + + +  S   VA   GT V +++LF T+P R   F K+ + E   +  +++   +  
Sbjct: 126 VYNSDGVLVSQERVARERGTTVSIKNLFQTLPVRQQEFHKNCKREFAKLVQMLQAYCMVR 185

Query: 180 PKVSFTFSTI----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SNEITL 233
           P ++F  + I     + +  +   + +      +  + G+  ++  V         E ++
Sbjct: 186 PDIAFRLTHIPNAGSNRQSDLVRTNGDSTLEAVLRHIFGKKQLDALVPFTADVAETEWSI 245

Query: 234 QGYTGI--PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           +G+     P   +  +++ ++ IN R      +   +  A+   +   +YP +VL + + 
Sbjct: 246 KGFVSKPLPGCGKSASDRQFISINKRPCNLTKVARAVNDAFHT-LNKAQYPFLVLDITLH 304

Query: 292 -------------------PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
                               + VDVNV P K  I  +    + + I   +          
Sbjct: 305 AAAKVFGIFDELFSPPQMPTQSVDVNVTPDKRTILVQRENQLSDAIRAHMLTVFEPFAGH 364

Query: 333 TSSVLSKKMISSFHQDNAPKT 353
                    +         KT
Sbjct: 365 YGLNEQLAFLPDVPPSATAKT 385



 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 135/386 (34%), Gaps = 20/386 (5%)

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
             I     E           +       G       +   A       N R        +
Sbjct: 477 HAIVHASPEHNGGCCHGSGHELGRSPSTGPVSANELS--PAVFCCEVENCRKFAKPLGSA 534

Query: 267 TIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
            +  A+     + R+  V L   +   Q      P  +      P  ++      +   +
Sbjct: 535 ALLRAHY----MSRHRGVSLPAALTVEQAAPLPDPLLAR--LEEPAPVQETGYGDLPLVL 588

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
                  +S+ +   +++  +  A +  L +  +S + +        ++ S         
Sbjct: 589 TDASQEVTSLDAVAALATCPRPPARRVCLAQPLSSQSASSASSKEAPSQASQEASRAFHA 648

Query: 387 PTYSEDNDPVE-----ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                 N+  E     +     +       Q +  +II++    L I+DQHA  E+  FE
Sbjct: 649 RIDRNANNAAEAELARQISKEDFLRMRIIGQFNLGFIIARLGRDLFIIDQHATDEKYNFE 708

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA---ERFGP-NAIAI 497
           ++     STKI  Q L+  + + L   +   +++H+E   + G +    E   P   + +
Sbjct: 709 RL---SKSTKIQQQRLIQGKALRLPAVQEMTLIDHEEIFKQNGFEFVVDEGAPPTKKVKL 765

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
             IP     +   + + +++  +++    +    R+  +LA+ AC  SI  G+ ++  EM
Sbjct: 766 TAIPHSKHVEFGQEDIEEMLALLLERPGVFVQPSRLRAMLASRACRSSIMVGKALKVAEM 825

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
             +++ M +  +   C HGRPT   L
Sbjct: 826 AEVVQHMSQLEHPWNCPHGRPTMRHL 851


>gi|150404123|gb|ABR68375.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404125|gb|ABR68376.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404131|gb|ABR68379.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404133|gb|ABR68380.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404135|gb|ABR68381.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404139|gb|ABR68383.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404141|gb|ABR68384.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404145|gb|ABR68386.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404147|gb|ABR68387.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404149|gb|ABR68388.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404151|gb|ABR68389.1| DNA mismatch protein [Lactobacillus casei ATCC 334]
 gi|150404153|gb|ABR68390.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404155|gb|ABR68391.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404157|gb|ABR68392.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404159|gb|ABR68393.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404161|gb|ABR68394.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404163|gb|ABR68395.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404167|gb|ABR68397.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404171|gb|ABR68399.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404173|gb|ABR68400.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404175|gb|ABR68401.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404177|gb|ABR68402.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404179|gb|ABR68403.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404181|gb|ABR68404.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404189|gb|ABR68408.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404193|gb|ABR68410.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404195|gb|ABR68411.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404197|gb|ABR68412.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404199|gb|ABR68413.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|328709516|ref|XP_001948119.2| PREDICTED: PMS1 protein homolog 1-like [Acyrthosiphon pisum]
          Length = 1023

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/532 (17%), Positives = 200/532 (37%), Gaps = 29/532 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M +++L  + I  I++ ++I   S  +KEL+ENS+DA ++ ++  +   G    +I DNG
Sbjct: 73  MSMKQLPSETIKLISSTQVITSASSVVKELMENSIDANATIIDIRLDNYGLDKIEIRDNG 132

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++  ++ +   R+ TSKIS+  D   +  +GFRGEAL SI AV+ +T++++   +   
Sbjct: 133 VGISHNDVYVMCLRNYTSKISEISDLGKLTYYGFRGEALSSICAVADVTVITKSDFDEYA 192

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE---TNLITDVIRR 174
               +    ++          GT++++ +LF  +P R     S++        + ++++ 
Sbjct: 193 KSFTMDSNGRVKDSTICHHQKGTVIKIVNLFKKLPVRKQIYSSKKHCVNDLRRVENIVKS 252

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A     V  +    KS  ++M           +I       ++ +    +E+ N  T+ 
Sbjct: 253 LAAIQQNVRVSLVHNKSVLWQMTSAIDLTVTFGQIWSSSMTKYVKHLTFTSEEVNIDTVL 312

Query: 235 GY----TGIPTFNRGNANQFYVFINGRTVQDKFILSTI----RTAYAETIPLGRYPVVVL 286
                      F    A+  Y+++N R V+D  I   I       +   +P G+Y   ++
Sbjct: 313 PVQNINVQNCFFTTNVADAIYLYVNKRPVRDNKIEKLIVGEFNNYFGHYLPPGKYLPCLI 372

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            + I P  +D+N+ P KS I F N  +I   +   I K      +       +   S+ +
Sbjct: 373 SITIPPETIDINLEPDKSRILFHNQDMILLNLKNCITKYYYNDKV-------ENDQSNIN 425

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           +      +  K        Q K        + +  +P+ + T   +N+            
Sbjct: 426 EALVHPNNKRKIPCDSEEFQIKKSPILMSPANDSFIPNAESTKIINNESFNSVSNNDEHT 485

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
            I      ++    +          +   E    E        +           +    
Sbjct: 486 QIVKELSLEDIDFEEPFISKKNKSDNKCLENDNVE--------STDDISEYRKKLLNIGS 537

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
                    + ++ +   I   ++    + +   P          LL + +D
Sbjct: 538 TSSIQSDDTNVKNFNTEDISISQWSKGDVVLNGKPLESGVVLKSDLLLETLD 589


>gi|149612031|ref|XP_001507554.1| PREDICTED: similar to homolog of yeast mutL gene [Ornithorhynchus
           anatinus]
          Length = 871

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 171/397 (43%), Gaps = 26/397 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ ++I   +  +KEL+ENSLDA ++ +E  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQVITSVASVVKELVENSLDAGATSIEVKLENYGLEKIEVRDNGQGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   RH TSKI   +D   + T+GFRGEAL S+  ++ + + ++   +N   Q 
Sbjct: 62  RAVDAPVMAVRHYTSKISSHEDLDQLTTYGFRGEALGSVCCIAEVLITTKTAADNFSTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS---EQVETNLITDVIRRMAI 177
            +     +++ +P  +  GT V V  LF  +P R  F  +    + E   +  ++    +
Sbjct: 122 VLDSSGHVTAQKPSHLGQGTTVTVLRLFKNLPVRKQFFSTAQKRKEELKRVQSILMAYGL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--SNEITLQG 235
             P++   F+  K+  ++   +S   +    +  ++G+  ++N      +   +E++L G
Sbjct: 182 LKPQLRVVFTHNKAVVWQ---KSRVSDHKMALMSILGKAVMDNLAPFQYQSADSEMSLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAY---AETIPLGRYPVVVLL 287
           +   P       +   A + ++FIN R V+ + IL  IR       +      YPV  + 
Sbjct: 239 FLPKPDADHSVTSLSTAERSFLFINSRPVRQRDILKVIRQYCGRRGQKETTHLYPVFFVN 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK-------KGISTSSVLSKK 340
           + +    VDVN+ P KS +  +N   +   +   +                S   +    
Sbjct: 299 IVVPTASVDVNLTPDKSRVFLQNKESVLLAVETVLAGWYGPLPGACGADEASPDPLPDGA 358

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
            + +   D   +   P   + L        LQ  R +
Sbjct: 359 GLPAGPCDREGEPAGPPTPSELPRAGPGANLQTTRPA 395


>gi|317146967|ref|XP_001821792.2| DNA mismatch repair protein (Pms1) [Aspergillus oryzae RIB40]
          Length = 1071

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 33/375 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 5   TIKAIEARSVHQIQSGQVIVDLCSVAKELVENSLDAGATSIEVRFKNNGLDLIEVQDNGS 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ E       +H TSK+S  +D S + TFGFRGEAL S+ A+S   +++         
Sbjct: 65  GISPENYENVALKHYTSKLSSYEDLSRLQTFGFRGEALSSLCALSEFHVVTAQANQAPKA 124

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+   + VA   GT V V  LF  +P R     K+ + E   + +++   A
Sbjct: 125 NRLDFEHSGKLKKTQIVAGQKGTTVSVEGLFKRLPVRRRELEKNIKREYGKVLNLLHAYA 184

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVE----------- 223
                V F      +    +   STNGN    E I+ V G   +   +            
Sbjct: 185 CVSKGVRFNVKNTVAKTRNVVVFSTNGNQTTKENIANVYGAKTLLALIPLDLTLEFEPSA 244

Query: 224 --------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                      +SN+I ++G+   P     R   ++   F+N R      I       Y 
Sbjct: 245 AGKRAAVDEERESNKIFVRGHISRPVSGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYK 304

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P V     +D    DVNV P K  I   +   +   +    + ++ +   S+
Sbjct: 305 SF-NVSQSPFVFADFHMDTNAYDVNVSPDKRTILLHDAGALIESL----KTSLTQLFESS 359

Query: 334 SSVLSKKMISSFHQD 348
              + +  +++  Q 
Sbjct: 360 DQTVPQSQVNNARQS 374



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 419  ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
               + D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +++E+  
Sbjct: 841  PPSSKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQPKQLDLTAVEEEIVIENQS 897

Query: 479  DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTTY 527
             L + G   E         G     +  +P     +   +++ +L+  ++ E+  SST  
Sbjct: 898  ALEKNGFVVEVDDSGNEPIGRRCKLV-SLPLSKEVVFGVRDLEELIV-LLSEMPASSTAG 955

Query: 528  TL----QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +      ++  + A  AC  SI  G+ +   +M R++R M        C HGRPT   L
Sbjct: 956  PMYVPRPSKVRKMFAMRACRSSIMIGKNLSQKQMTRVVRNMGTIDKPWNCPHGRPTMRHL 1015


>gi|83769655|dbj|BAE59790.1| unnamed protein product [Aspergillus oryzae]
          Length = 866

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 33/375 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVAKELVENSLDAGATSIEVRFKNNGLDLIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTG 118
           G++ E       +H TSK+S  +D S + TFGFRGEAL S+ A+S   +++         
Sbjct: 63  GISPENYENVALKHYTSKLSSYEDLSRLQTFGFRGEALSSLCALSEFHVVTAQANQAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+   + VA   GT V V  LF  +P R     K+ + E   + +++   A
Sbjct: 123 NRLDFEHSGKLKKTQIVAGQKGTTVSVEGLFKRLPVRRRELEKNIKREYGKVLNLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVE----------- 223
                V F      +    +   STNGN    E I+ V G   +   +            
Sbjct: 183 CVSKGVRFNVKNTVAKTRNVVVFSTNGNQTTKENIANVYGAKTLLALIPLDLTLEFEPSA 242

Query: 224 --------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                      +SN+I ++G+   P     R   ++   F+N R      I       Y 
Sbjct: 243 AGKRAAVDEERESNKIFVRGHISRPVSGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYK 302

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
               + + P V     +D    DVNV P K  I   +   +   +    + ++ +   S+
Sbjct: 303 SF-NVSQSPFVFADFHMDTNAYDVNVSPDKRTILLHDAGALIESL----KTSLTQLFESS 357

Query: 334 SSVLSKKMISSFHQD 348
              + +  +++  Q 
Sbjct: 358 DQTVPQSQVNNARQS 372



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
              + D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +++E+  
Sbjct: 682 PPSSKDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVQPKQLDLTAVEEEIVIENQS 738

Query: 479 DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTTY 527
            L + G   E         G     +  +P     +   +++ +L+  ++ E+  SST  
Sbjct: 739 ALEKNGFVVEVDDSGNEPIGRRCKLV-SLPLSKEVVFGVRDLEELIV-LLSEMPASSTAG 796

Query: 528 TL----QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            +      ++  + A  AC  SI  G+ +   +M R++R M        C HGRPT   L
Sbjct: 797 PMYVPRPSKVRKMFAMRACRSSIMIGKNLSQKQMTRVVRNMGTIDKPWNCPHGRPTMRHL 856


>gi|19173567|ref|NP_597370.1| DNA MISMATCH REPAIR PROTEIN (MUTL/HEXB FAMILY) [Encephalitozoon
           cuniculi GB-M1]
 gi|19170773|emb|CAD26547.1| DNA MISMATCH REPAIR PROTEIN (MUTL/HEXB FAMILY) [Encephalitozoon
           cuniculi GB-M1]
          Length = 563

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/561 (18%), Positives = 234/561 (41%), Gaps = 46/561 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M+I++L   +I++I+AGE+I RP   +KE IENSLDA S+ +   +   G +   + D+G
Sbjct: 1   MEIKRLPSDVISRISAGEVITRPYNILKETIENSLDANSTHITIKMEQDGLTL-TVEDDG 59

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   +  +  +++CTSK++  ++  ++ ++GFRGEAL SI   + + + S+  +   G
Sbjct: 60  DGIHESDFELLCKQYCTSKLTKEEELFSLSSYGFRGEALSSISRCARIKVRSKRREGEIG 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +      ++ +++ V M  GTIVE++++F+    R      ++ E   +  ++   ++ 
Sbjct: 120 YEAVYRDTEMITIKGVGMKDGTIVEIKNIFYNNKVREKHFSKKREEIREMMWLVGMYSVF 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
             ++SF     +  +     +   G         +                 + +     
Sbjct: 180 NSRISFELFYGEKLQELPKSRVCVGEDGYSNEDRVKRKVGMLNELYKADGKLLFVSDKEY 239

Query: 239 IPTFN----RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           +  F+            +F+NGR V  + +  ++   Y + +P  + P++ L L ++   
Sbjct: 240 LVIFSTQQFCLRKGMLVLFVNGRLVVSQEMKESLFKVYKDILPPQKQPLIYLELYVEKSM 299

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVNVHP+K  + F N   +   + + I + ++K          +K +    +D + ++ 
Sbjct: 300 VDVNVHPSKREVLFSNEESMTQRLCKCIAERLSKL------DYEQKPLKPLPKD-SFQSP 352

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           +  Y+   + +  +   +E    T +       + S+    + + + T ++         
Sbjct: 353 IKVYSDPTSQSIAECLEKE----TTERREFRLFSLSKLRLEIVDVDTTFFRSLSYVGVKD 408

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           ++ I+ Q    L+        +  +++ +  DF +     +  L      + +   AL+ 
Sbjct: 409 RDTILVQHGSSLLNCKTVPLLKEYLYQSLINDFGN--FEKKRTLVRLRCKMDDKTRALLN 466

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIPAI---------------LSKKNIPQLLRDIIDE 519
           ++           E    +   I  IP I               + + +  + L++IID 
Sbjct: 467 DY--------FSIEVIEEH---IVGIPIISTICIDAPELWSGFEIRRSSEYETLKNIIDV 515

Query: 520 IIDSSTTYTLQDRIENILATM 540
           +    +   +  ++ NIL   
Sbjct: 516 VSTLYSGVEMSTKLFNILKRR 536


>gi|168067130|ref|XP_001785478.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662920|gb|EDQ49719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 742

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 151/330 (45%), Gaps = 14/330 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ +    +++I +G+++   + A+KEL+ENSLDA ++ +E  +   G    ++ DNG 
Sbjct: 8   KIQPIDRAAVHRICSGQVVLDLATAVKELVENSLDAGATSIEIRLKEYGSVLIEVADNGS 67

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ E       ++ TSKISD  D   + +FGFRGEAL S+ A+S +++ +R  +   GA
Sbjct: 68  GVSPENYQGLTLKYHTSKISDFSDLQTLTSFGFRGEALSSLCALSDVSVTTRAKEEAIGA 127

Query: 120 QIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAI 177
           ++      + S +       GT V V +LF  +P R    K + + E   +  V++  A+
Sbjct: 128 RLTYDHSGVLSSQESVARAVGTTVAVANLFSPLPVRFKEFKRNIRREYGRLLSVLQAYAL 187

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
               V    +    KS R  +     +G+  + I  V G         LN + +    + 
Sbjct: 188 IAKGVRIFCTNQVGKSGRTTIVRTQGSGSVKDNIISVFGSKTAACLEPLNMEQSVGPGE- 246

Query: 236 YTGIPTFNRGNA-NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
                      + ++ ++++NGR V    I   +   Y     L + P+  L   + P  
Sbjct: 247 -----WMTHRASGDRQFIYVNGRPVDLPKINKLLNELYGSFNSLQK-PMAFLNFILTPTA 300

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
            DVNV P K  +     + +   + ++++ 
Sbjct: 301 YDVNVTPDKRKVFLHTESALLTALKEALEC 330



 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 34/208 (16%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q +  +++++    L IVDQHA+ E+  FE++ +     K   Q LL P  ++L   E
Sbjct: 536 VGQFNLGFVLAKLDQDLFIVDQHASDEKYNFERLTKSTILNK---QPLLRPLSLELSAAE 592

Query: 470 CALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIP----AILSKKNIPQLLRDIIDEI 520
             ++  H E   + G           G   +++  +P          ++ +L+  + +  
Sbjct: 593 EVIVTTHIETFRQNGFDFVENEDAPLGSR-LSLSAVPFSQNITFGIGDVQELVGILANGT 651

Query: 521 I-------------DSST------TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
                          + +      +     R+  +LA+ AC  SI  G  +   EM ++L
Sbjct: 652 APVAKPSTTNGTGSQNGSQKGGLLSAIRPSRVRGMLASRACRSSIMIGDALCKKEMEKIL 711

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIE 589
             +        C HGRPT   L  +D+E
Sbjct: 712 CHLADLDAPWNCPHGRPTMRHL--ADLE 737


>gi|150404169|gb|ABR68398.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+AIA P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAIANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|1709686|sp|P54279|PMS2_MOUSE RecName: Full=Mismatch repair endonuclease PMS2; AltName: Full=DNA
           mismatch repair protein PMS2; AltName: Full=PMS1 protein
           homolog 2
 gi|896063|gb|AAA87031.1| PMS2 [Mus musculus]
          Length = 859

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 92/403 (22%), Positives = 174/403 (43%), Gaps = 27/403 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G++I   S A+KELIENS+DA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDGKSVHQICSGQVILSLSTAVKELIENSVDAGATTIDLRLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +     + G +
Sbjct: 75  VEEENFEGLALKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHGSASVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI+   P     GT V V+ LF+T+P R   F ++ + E + +  V++   I 
Sbjct: 135 LVFDHNGKITQKTPYPRPKGTTVSVQHLFYTLPVRYKEFQRNIKKEYSKMVQVLQAYCII 194

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQ 234
              V  + +    +  R+ +   S      E I  V G+  + + +   +   S+ +  +
Sbjct: 195 SAGVRVSCTNQLGQGKRHAVVCTSGTSGMKENIGSVFGQKQLQSLIPFVQLPPSDAVCEE 254

Query: 235 GYTGIPTFNRGNANQFYVFINGRT-----VQDKFILSTIR------------TAYAETIP 277
                   ++  +     F + RT      Q     S+IR              +     
Sbjct: 255 YGLSTSGRHKTFSTFRASFHSARTAPGGVQQTGSFSSSIRGPVTQQRSLSLSMRFYHMYN 314

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTSS 335
             +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ + 
Sbjct: 315 RHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDANKLNVNQ 374

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                +  +  + +  +   P       +   K    E R+++
Sbjct: 375 QPLLDVEGNLVKLHTAELEKPVPGKQDNSPSLKSTADEKRVAS 417



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 664 EISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 720

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 721 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQD 779

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 780 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWN 839

Query: 573 CNHGRPTFIK 582
           C HGRPT   
Sbjct: 840 CPHGRPTMRH 849


>gi|150404127|gb|ABR68377.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + + +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKVTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|332209580|ref|XP_003253892.1| PREDICTED: PMS1 protein homolog 1 isoform 1 [Nomascus leucogenys]
          Length = 930

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/412 (24%), Positives = 178/412 (43%), Gaps = 33/412 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAIDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           +  K   +   F++  +   +     TS+   Q  +   E+  + +D L   
Sbjct: 359 VLSKTAETDVLFNKMESSGKNYSNVDTSIIPFQNDMHNDESGKNADDCLKHQ 410


>gi|332814960|ref|XP_515987.3| PREDICTED: PMS1 protein homolog 1 isoform 3 [Pan troglodytes]
          Length = 932

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 192/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +    +I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGRILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKVESSGKNYSNVDTSIIPFQNDMHNDESGKNTDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  SQT       
Sbjct: 419 GHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 458



 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 29/301 (9%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R  + ++  I Q  Q ++           +  +    H+     ++ PK    L +  EK
Sbjct: 630 RYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQK-HKLKTSLSNQPKLDELLQSQIEK 688

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +  + V+  E     L         +  +  +   +++
Sbjct: 689 RRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLR--FPDAWLMTSKTEVML 746

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 747 LNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGST 806

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N + I  +   L    +  L ++I++ I++ +    
Sbjct: 807 YLSDPRLTANGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNRNAKEV 865

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKL 583
            + R   +++ +   A   S +    +   ++  ++  M+        +C HGRP F  L
Sbjct: 866 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHL 925

Query: 584 K 584
            
Sbjct: 926 T 926


>gi|149730794|ref|XP_001502013.1| PREDICTED: similar to postmeiotic segregation 1 isoform 1 [Equus
           caballus]
          Length = 931

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 185/439 (42%), Gaps = 33/439 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENFGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ +++++R   +N   Q 
Sbjct: 62  KAIDAPVMAIKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVSIITRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDGSGHIISQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   ++   +    +  V+G   + N   V+ + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KTRVSDHKMALMSVLGTAVMGNMESVQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKHDADHSFTSLSTPERSFIFINNRPVHQKDILKLIRHYYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTII-----------RNFIIQSIQKAINKKGISTSSV 336
           +++    VDVN+ P KS +  +N   I              +  +     N+  +S++  
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESILIALENLLTTCYGSLPSTNSYENNETDVSSADT 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
           +  K   +   F++  +   + P   T     Q  +   E+  +TN             +
Sbjct: 359 VVSKTAETDVLFNKMESSGNNYPNVDTLAIPFQNDVHNDESVKNTNYCSDPQLHVDDHYD 418

Query: 394 DPVEESEATHYQLGIACAQ 412
           D     +++  +      Q
Sbjct: 419 DHFSSEDSSIVKNTRNLFQ 437


>gi|198437487|ref|XP_002125934.1| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) [Ciona intestinalis]
          Length = 692

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 123/656 (18%), Positives = 241/656 (36%), Gaps = 81/656 (12%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
              + +Q+ +G  I   S  ++ELI NS+DA +  +   +    K + Q+TDNG G +  
Sbjct: 14  PATVQSQLRSGVAITSVSQCVEELIANSIDANAKTIGIFVDL-KKYYVQVTDNGCGFSKY 72

Query: 67  EIPMAVQRHCTSKISDD---FSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIA 122
            +  + +R+ TSK  D      N+  +G+RGEAL S+  +S ++++++    + +     
Sbjct: 73  NLFKSARRYATSKCPDSENFKFNLAHYGYRGEALASMAELSSNVSIITCMKGDGSPYSKT 132

Query: 123 IS-----GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           IS        I +        G+ V V  LF  +P R  ++  + +E   I   +  +A+
Sbjct: 133 ISSFGTKHSDIQTHVATKQQQGSTVTVSGLFSNMPVRRKYMDDD-IEAEQIRKTVCNLAL 191

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGY 236
           +  +V+FT + ++S       ++T+      +  +  G + + N V     +   ++   
Sbjct: 192 SNLEVTFTLNVLESAHTLRLSRTTDPLIRSSLKCLCNGRNHLANNVSFRLNTIHDSVASQ 251

Query: 237 TGIPTFNRGNANQFYVF---INGRTVQDKFILSTIRTAYAET---IPLGRYPVVVLLLEI 290
                           +      R    +++    R  Y      +  G+  V       
Sbjct: 252 NFQTISTTNGKLHIDAYLSETGHRNKSIQYVYVNRRCPYKWYDISLAPGKTMVEFRNWNF 311

Query: 291 DPRQVDVNVHPAKSYIRFRNPTI------------------IRNFIIQSIQKAINKKGIS 332
               V      AK+       T                   +    + + +        S
Sbjct: 312 ILSAVRKLFCKAKNIPWISVETPANFKSESMDINTATDLVCVMGRAVGTTRPCDFTNAKS 371

Query: 333 TSSVLSKKMISSF-HQDNAPKTHLPK--------YATSLTNTQEKLFLQENRLSTNDLLP 383
           TS   +      F  QD    T LPK           S T       LQ  + +    +P
Sbjct: 372 TSPNGNTTQNCPFTEQDQNKHTELPKGIGLNKVLVPISKTPRLSANLLQSTQKTVKKPMP 431

Query: 384 SDDPTYSEDNDPVEESEATHYQL-----------------GIACAQIHQNYIISQ----- 421
           S          P +++   H                         Q    +I        
Sbjct: 432 SVRVDNVTVFRPQQQNTTAHPTFFQGIYTEVKLTKEVLTKLKVIGQFGNKFIACSVGCTT 491

Query: 422 -TTDGLVIVDQHAAHERLIFEKMRQDFNSTK----ITSQTLLTPEIIDLLEGECALIMEH 476
            +   L++VDQHAAHER+  E    D   +     + +  L +   I+L + + A +  H
Sbjct: 492 DSRGMLLLVDQHAAHERVRLESFISDAYESSKRINLKTSKLESKVEINLTKTQTAAVRNH 551

Query: 477 DEDLHRLGIKAER---FGPNAIAIREIPAILS-KKNIPQLLRDIIDE-----IIDSSTTY 527
            E  +  G++ +       + + +  IP++L+    + + + ++I+E      ++   + 
Sbjct: 552 PEVFYTCGLRFDSDLNTEDDLVTVNSIPSLLTTSGTLKETIENLIEERTQALYVNRGVSD 611

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           ++   +  +L + AC+G+IR G  +   +   LL  + K     QC HGRP+ + L
Sbjct: 612 SMSPVLFQLLCSKACHGAIRFGDPLALEQCTELLTALSKCDFPFQCAHGRPSVMPL 667


>gi|57110873|ref|XP_536002.1| PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair
           protein PMS1) isoform 1 [Canis familiaris]
          Length = 930

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/523 (19%), Positives = 208/523 (39%), Gaps = 47/523 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KEL+ENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELLENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAIDAPVMAVKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V V  LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDGSGHIISQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++   F   K+  ++   ++   +    +  V+G   + N      + + ++I L G
Sbjct: 182 LKPELRIVFIHNKAVIWQ---KTRVSDRQVALRAVLGTAVMGNMEPFQYHPEDSQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKHDVDHSSTSLSTPERSFIFINNRPVHQKDILKLIRHYYNLKCLKEASRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS--- 344
           +++    VDVN+ P KS +  +N   +   +   +         + S   +K  +SS   
Sbjct: 299 IDVPTADVDVNITPDKSQVLIQNKEAVLIALENLMTTCYGSLPSTNSYENNKTDVSSADM 358

Query: 345 -----------FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                      F++  +   + P   TS    Q  +   ++  +TN  L +        +
Sbjct: 359 VVSNTTETDVLFNKMESSGNNYPNVDTSAIPFQNDVCNDKSGKNTNYCLNNQINVDDHCD 418

Query: 394 DPVEESEATHYQLGIACAQ------IHQNYIISQTTDGLVIVD-QHAAHERLIFEKMRQD 446
           D      +   +   +  Q      +       + ++   +V  +H   E       + +
Sbjct: 419 DHFNSENSNIDKNTRSIFQEIPMNNLSCEDAQKECSETCFVVSVKHTQSENGN----KSN 474

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
            +  +   +  +  + +++   + +         + +G   E 
Sbjct: 475 RDENRKNEEGAVPEKPLEISADDWSKGNTLK---NSMGENIEP 514


>gi|221128371|ref|XP_002165510.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 790

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 29/353 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + +  I+ I +G+++   + A+KEL+ENSLDA    +E  +   GK + +++DNG G
Sbjct: 11  IQPIDQSSIHHICSGQVVLDLATAVKELVENSLDANGKIIEIRLKEYGKEYIEVSDNGDG 70

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   +      +H TSK+ +  D + + TFGFRGEAL S+ A++ + + +    +N G +
Sbjct: 71  IEENDFESLCLKHYTSKLKEFSDLTFVSTFGFRGEALSSLSALADVVVSTHSKTSNVGYK 130

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      K+     +A   GT V V +LF+T+P R   F  + + E + +  V+   ++ 
Sbjct: 131 LEFDHSGKLVKNTSIARATGTTVTVTNLFYTLPVRYKEFHFNIKKEFSKLIQVLYAYSLI 190

Query: 179 YPKVSFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGE-------------DFINNAVEL 224
              V F+      + +  +     N N P  IS + GE              F N+ +E 
Sbjct: 191 NNGVRFSCINQVGNKKKVLLSTDGNKNVPSIISGIFGETQTKQLLKIEQISKFDNSVLEE 250

Query: 225 NEKSNEITLQ--------GYTG--IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAE 274
                   +Q        G+         R   ++ ++FIN R      +L  I   Y  
Sbjct: 251 YNLPTSFVIQFDGHFTLNGFISATDHGSGRNLPDRQFIFINNRPCDFTKLLRVINEVYHT 310

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
                +YP + L +      VDVN+ P K  I  +   ++  F+  +++    
Sbjct: 311 Y-NRHQYPFIYLNVLARKDCVDVNITPNKRQIMVQEEKVLLAFVKSTLKCMFE 362



 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 108/280 (38%), Gaps = 13/280 (4%)

Query: 314 IRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
           + + I       +N     + +      IS    +   K    K   +   +  K + Q 
Sbjct: 505 LSDNIKHKFTDTLNTLANKSVNADDILDISVVENNYKKKVDQDKIVATFDFSMLKEYYQR 564

Query: 374 NRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ------LGIACAQIHQNYIISQTTDGLV 427
           + +   +         +  ++   E E T +             Q +  +II++  + L 
Sbjct: 565 HTVCEQNTSTLFHAKINPSHNSAAEEELTKHVSKDMFAKMEIVGQFNLGFIITKYEENLF 624

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           I+DQHA  E+  FE +++         Q L+ P  ++L     ++++++     + G + 
Sbjct: 625 IIDQHATDEKYNFETLQKKHVLKG---QRLIEPISMELTLVNESILIDNINIFKKNGFEF 681

Query: 488 ----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
               E+ G + I +  +P  L+       + ++I  + DS        R+  + A+ AC 
Sbjct: 682 KIDYEQTGNSKIKLLTVPTSLNSSFSVSDVEELIFMLNDSPGVMCRPSRVRQMFASKACR 741

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            S+  G  +    M RL++ M +  +   C HGRPT   L
Sbjct: 742 SSVMVGTALDHFMMKRLVQHMGEIEHPWNCPHGRPTMRHL 781


>gi|295099688|emb|CBK88777.1| DNA mismatch repair enzyme (predicted ATPase) [Eubacterium
           cylindroides T2-87]
          Length = 251

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 85/235 (36%), Positives = 127/235 (54%), Gaps = 7/235 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  LSE + N IAAGE++ERP+  +KE +ENS+DA++  +E     GG     ITD+G 
Sbjct: 3   KIHVLSEHLTNMIAAGEVVERPAGIVKECVENSIDAKAKTIEIEAFQGGIERLIITDDGI 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM  E+  +A  RH TSK+   +D  NIHT GFRGEALPSI +V+ + L +    +N   
Sbjct: 63  GMDKEDAHLAFMRHATSKMHSEEDLFNIHTMGFRGEALPSIASVAKVELNT--NDSNEST 120

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I  S  ++      +   GT +++  LF   PAR   LKS   E ++I D++ +MA+++
Sbjct: 121 LIRYSYGELICEESSSCPRGTKIDISGLFVKTPARFKHLKSPSYEFSVIADIVNKMALSH 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           P++ F  S      ++    S NG   E + Q+ G +   NAV    K   +   
Sbjct: 181 PEIRFKLSHDGRVVFQ---TSGNGKIQEILYQMYGREVAENAVYFEGKMMILRFM 232


>gi|64653335|gb|AAH96331.1| PMS1 protein [Homo sapiens]
          Length = 669

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 191/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  SQT       
Sbjct: 419 GHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 458


>gi|205375648|ref|ZP_03228435.1| DNA mismatch repair protein [Bacillus coahuilensis m4-4]
          Length = 123

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 2/122 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 1   MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A+ RH TSKI+  DD   I + GFRGEAL SI +VS LTL SR  +    
Sbjct: 61  CGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEA 120

Query: 119 AQ 120
            Q
Sbjct: 121 WQ 122


>gi|150404183|gb|ABR68405.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDSNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|150404185|gb|ABR68406.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  239 bits (611), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASHNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|282889889|ref|ZP_06298427.1| hypothetical protein pah_c005o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500212|gb|EFB42493.1| hypothetical protein pah_c005o023 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 469

 Score =  239 bits (610), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 204/468 (43%), Gaps = 19/468 (4%)

Query: 142 VEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMN---- 197
           +E++ LFF +P R  F KS   + N I  ++   A+A+P + F   +      K      
Sbjct: 1   MEIKSLFFNVPVRRKFQKSPTYDANEILKILTMQALAHPDIQFELISNHETLLKTPTSKQ 60

Query: 198 FQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGR 257
             S      +RI  V+G D       +  +     + GY G P+ +R N    ++FIN R
Sbjct: 61  PASFAEKLSDRIGSVLGHDLAQEICFIEGEKEGCKITGYIGFPSASRPNRACQFLFINQR 120

Query: 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
           TV    I   +R  Y   +   R+P+ +L L +    VDVNVHP K  +R R   +I+  
Sbjct: 121 TVTSPAISFAVREGYGTALATNRHPLFILHLSLPGTLVDVNVHPQKKEVRLRQEAMIKEL 180

Query: 318 IIQSIQKAINKKGISTSSV--LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
           II ++QKA+    + ++ +      + +    + +       + +   +  +   L+E  
Sbjct: 181 IISAVQKALYPHEVESTPIHFAEPPIFTPAFDEKSDFQPSTSFGSFGGHFFDHSLLEELA 240

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQL----------GIACAQIHQNY-IISQTTD 424
             T     S DP  +++   + E      Q           G         + +  Q   
Sbjct: 241 NPTPYPQRSFDPPKTQEEFQLPEQLPLPPQKNVPLVLTTIKGFILTHYTNAFPMTKQEEI 300

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           G+ ++DQ AAH R++FE+++    S   + QTLL P  I+    E AL+ EH  + + +G
Sbjct: 301 GIGLIDQRAAHFRILFEQLQS--ASPTFSIQTLLIPYTIETTPLEAALLKEHLMEFNAMG 358

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYG 544
           I+ + FG     I  IP++    +I   + ++I  + + + +  L+   +  LA +A   
Sbjct: 359 IQIKEFGSTTFTIDGIPSLFGNSDITYFVDELIKTLAEMNQSSALKKEKDKCLAQIASKA 418

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           +IR    +  +E   L+R++ +  +   C  G+P  I L   +I + F
Sbjct: 419 AIRKEHILSLLEAQNLVRQLWECQSPLYCPFGKPIAIHLSREEIARQF 466


>gi|39952147|ref|XP_363790.1| hypothetical protein MGG_01716 [Magnaporthe oryzae 70-15]
 gi|145020440|gb|EDK04569.1| hypothetical protein MGG_01716 [Magnaporthe oryzae 70-15]
          Length = 1111

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 157/379 (41%), Gaps = 35/379 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +   +++QI +G++I       KELIENSLDA ++ ++      G    ++ DNG 
Sbjct: 6   TIKAIEAGVVHQIQSGQVIVDLCSVAKELIENSLDAGATAIDVRFKNQGLDSIEVQDNGC 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSR-PPQNNTG 118
           G+  +       +H TSK+S   D   +HTFGFRGEAL S+ A+SH T+ +        G
Sbjct: 66  GIAPQNYASVALKHYTSKLSSFADLDTLHTFGFRGEALSSLCALSHFTVTTCLQSDVPRG 125

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+ S   VA   GT+V V  LF  +P R     ++ + E   + +++ + A
Sbjct: 126 TKLEFEVSGKLKSTSLVAAQKGTVVTVETLFHNLPVRRRELERNIKREWGKVINLLNQYA 185

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDF----------------- 217
                + FT S   +   +    ST GN    E I  V G                    
Sbjct: 186 CIQTGIKFTVSQQPTKGKRTVLFSTKGNKSTRENIVNVFGAKTLSALIAMELELELEPTT 245

Query: 218 ------INNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIR 269
                    +     ++  + ++G+   P     R   ++   ++NGR            
Sbjct: 246 SKVTAAATGSTRHQGETTTVFVRGHVSRPARGEGRQTPDRQMFYVNGRPCILPQFAKVFN 305

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y       + P +   +++D    DVNV P K  I   +   + + + +++ +   K+
Sbjct: 306 EVYKTYNST-QSPFIFADIQLDTHLYDVNVSPDKRSILLHDQGRMLDNMREALIELFEKQ 364

Query: 330 G--ISTSSVLSKKMISSFH 346
              I  S ++++K  + F 
Sbjct: 365 DITIPVSQLITQKPTTPFK 383



 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 13/170 (7%)

Query: 424  DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            D L I+DQHA+ E+  FE+++    ST + SQ L+ P+ ++L   E  +I+E+ + L   
Sbjct: 906  DELFIIDQHASDEKYNFERLQ---ASTVVESQRLVRPKPLELTALEEEIIIENQKALETN 962

Query: 484  GI--KAERFGPNAI----AIREIP----AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
            G     +  G + +     +  +P       S  ++ +L+  + D    ++TT     R+
Sbjct: 963  GFIVDVDESGESPVGSRCRLLSLPLSRETTFSLTDLEELVSLLADNPTTTATTVPRPSRV 1022

Query: 534  ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              + A  AC  S+  GR +   +M +++R M        C HGRPT   L
Sbjct: 1023 RKMFAMRACRSSVMVGRALSQPQMEKVVRHMGGMEKPWNCPHGRPTMRHL 1072


>gi|197103034|ref|NP_001126019.1| PMS1 protein homolog 1 [Pongo abelii]
 gi|55730063|emb|CAH91756.1| hypothetical protein [Pongo abelii]
          Length = 931

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 191/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDTPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLAQGTTVTALRLFRNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   ++N    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMSNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTII-----------RNFIIQSIQKAINKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +              ++ +     NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLLSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  + +D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKMESSGKNYSNVDTSIIPFQNDMHNDESGKNNDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  +QT       
Sbjct: 419 GHCSSEISNVDKNTKNAFQDISMSNVSWENTQTEYSKTCF 458



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 103/292 (35%), Gaps = 30/292 (10%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
           +++AI ++   +     KK+  +   + A K  L    ++     E L  Q  + S N  
Sbjct: 635 MKRAIEQESQISLKDGRKKIKPTSAWNLAQKHKLKTSLSNQPKLDELLQSQIEKRSQNIK 694

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIH----QNYIISQTTDGLVIVDQHAAHER 437
           +     +        ++ +    +       IH     +  +  +   +++++ +   E 
Sbjct: 695 MVQIPFSMKNLKINFKKQDKVDLEEKNEPCLIHNLRFPDAWLMTSKTEVMLLNPYRVEEA 754

Query: 438 LIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED-------------LHR 482
           L+F+++ ++    +  +    +LT  + +       L     +D             L  
Sbjct: 755 LLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGSTYLSDPRLTA 814

Query: 483 LGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
            G K +         N + I  +   L    +  L ++I++ I++ +     + R   ++
Sbjct: 815 NGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNKNAKEVYECRPRKVI 873

Query: 538 ATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKLK 584
           + +   A   S +    +   ++  ++  M+         C HGRP F  L 
Sbjct: 874 SYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKGCVHGRPFFHHLT 925


>gi|57164027|ref|NP_001009535.1| PMS1 protein homolog 1 [Rattus norvegicus]
 gi|38197450|gb|AAH61722.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Rattus
           norvegicus]
          Length = 919

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/514 (20%), Positives = 204/514 (39%), Gaps = 39/514 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ + I      +KELIENSLDA ++ ++  +   G    +I DNG G+
Sbjct: 2   KQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGANSIDVKLENYGFDKIEIRDNGAGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++P+   ++ TSKI   +D   + T+GFRGEAL +I  V+ + + +R   ++   Q 
Sbjct: 62  KAVDVPVMAVKYYTSKISSHEDLQTLTTYGFRGEALGAICNVAEVVVTTRTAADDFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V V  LF  +P R  F    K  + E   + D++   A+
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTVLKLFKNLPVRRQFYSTPKKCKDELKNVQDLLISYAV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +  TF   K+  ++   +S   +    +  V+G   + N   VE   + ++I L+G
Sbjct: 182 LKPDLRITFVHNKAVIWQ---KSRVPDHRMALMSVLGTAVMGNMESVERYCEDSQIHLRG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
                       +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 LFPKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRHYYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           +++   +VD+N+ P KS +  +N   +   +   +         + S   ++  +SS + 
Sbjct: 299 IDVPSAEVDINLTPDKSQVLLQNKESVLIALENLLMTCYGPLPTTESYENNRVDVSSANV 358

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
             +  T        L N  E    +     T  +   +D +    +  + E     +  G
Sbjct: 359 VISETTETDV----LFNKMESSGNKYPNADTLAIPFQNDESRKNTDHHLNEQINIGHCDG 414

Query: 408 IACA---QIHQNYIISQTTDGLVIVDQHAAH---------ERLIFEKMRQDFNSTKITSQ 455
                   I+++   +   + L      + H         E +  E  R          +
Sbjct: 415 HFSGEYSHINKDTFQNIPRNNLSSEANQSKHSETHSADSIEHIQGENGRSGTGENGEDGK 474

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
             L  + +++   + +         + +G   E 
Sbjct: 475 KTLPEKALEICADDWSKGN----VFNSMGENIEP 504


>gi|150404129|gb|ABR68378.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404137|gb|ABR68382.1| DNA mismatch protein [Lactobacillus casei]
 gi|150404165|gb|ABR68396.1| DNA mismatch protein [Lactobacillus casei]
          Length = 249

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTT-AMDSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236

Query: 267 TIRTAYAETIPLG 279
            +   Y   + +G
Sbjct: 237 AVIAGYGSKLMVG 249


>gi|74180273|dbj|BAE24444.1| unnamed protein product [Mus musculus]
          Length = 669

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 187/440 (42%), Gaps = 24/440 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ + I      +KELIENSLDA ++ +E  +   G    +I DNG G+
Sbjct: 2   KQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIEVKLENYGFDKIEIRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   ++   Q 
Sbjct: 62  KAVDVPVMAVKYYTSKISSHEDLGNLTTYGFRGEALGSICNVAEVVVTTRTSADDFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   + D++    +
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYGV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P V  TF   K+  ++   +S   +    +  V+G   + N   VE + + ++I L G
Sbjct: 182 LKPDVRITFVHNKAVIWQ---KSRVPDHRMALMSVLGTAVMGNMESVEQHCEQSQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FFPKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRRYYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           +++   +VD+N+ P KS +  +N   +   +   +         + SS  ++  ISS + 
Sbjct: 299 IDVPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESSENNRVDISSANM 358

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-EATHYQL 406
             +  T        L N  E          T+ +    D +    +  + E     +Y  
Sbjct: 359 VVSQTTETDV----LFNKMESFGNNYPNADTSAIHFQKDESRKNIDHHLNEQINIGNYFD 414

Query: 407 GIACAQIHQNYIISQTTDGL 426
           G     I+++   +   + L
Sbjct: 415 GHFSGDINKDTFQNIPMNNL 434


>gi|156363567|ref|XP_001626114.1| predicted protein [Nematostella vectensis]
 gi|156212978|gb|EDO34014.1| predicted protein [Nematostella vectensis]
          Length = 775

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/504 (19%), Positives = 196/504 (38%), Gaps = 37/504 (7%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
            +  K ++QI +G+++   + A+KEL+ENSLDA ++ V+  +   G    +++DNG G+ 
Sbjct: 18  PIDRKSVHQICSGQVVLNLATAMKELLENSLDAGATSVDVRLKEHGSHSIEVSDNGAGVE 77

Query: 65  SEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-I 121
            +       +H TSK+ D  D S + TFGFRGEAL S+ A+S L++ +R      G +  
Sbjct: 78  PQNFEALTLKHYTSKLKDFSDLSAVETFGFRGEALSSLCALSDLSITTRHISQTAGTKLD 137

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYP 180
                K+ S  P A   GT+V V +LF T+P R   FL++ + E   +  V++   +   
Sbjct: 138 YDHNGKLKSKLPCAREQGTMVTVLNLFSTLPVRHKEFLRNIKKEFVKLVHVLQGYCLISA 197

Query: 181 KVSFTFS-TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE------------- 226
               T +  +   R  +     +    + I+ V G   + + +   +             
Sbjct: 198 GTRITCTNHVSGRRSTVVSTHGSSQIKDNITAVFGPKQVQSLLPFKQLQPSEEDCTELNL 257

Query: 227 ------KSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
                 ++N  T+ G+         R ++++ + FIN R      +   +   Y      
Sbjct: 258 SVVSNSETNPFTITGFISKADHGSGRSSSDRQFFFINKRPCDLPKVSRVVSEVYHMY-NR 316

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
            ++P V+L + +    VDVNV P K  +  +  T++   +  S+ K  +    +      
Sbjct: 317 HQFPFVMLDISLKRDAVDVNVTPDKRQVFLQQETLLLATLRTSLIKMFDPGTSTYEVNQK 376

Query: 339 KKMISSFHQDNAPKTHLP-----KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                         +H         + +            N L++     +    + + +
Sbjct: 377 MFTQIKLLPSPTQASHFSLASGDSPSGNNAGASTSGGFHSNSLNSLHGNNNVSGLWRKFS 436

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI-----VDQHAAHERLIFEKMRQDFN 448
           +     E    Q      ++H+    ++  + L++      D  A     IF  M+ D  
Sbjct: 437 ELSPSGEKKQSQHEEQKERVHRGNKPTKVKEILLLKKDNKNDSLALDSSSIFPVMQSDLK 496

Query: 449 STKITSQTLLTPEIIDLLEGECAL 472
                ++  +          +  L
Sbjct: 497 EESFHTRQNIQETRGTFSNDQEDL 520



 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 90/215 (41%), Gaps = 7/215 (3%)

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
           Q  ++       S +   + + +     +   +       Q +  +I+++  + L I+DQ
Sbjct: 552 QNGKVRIFRAKISPENNSAAEEELTRNIQRGSFARMEIVGQFNLGFILAKLDNDLFIIDQ 611

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HA+ E+  FE       +T + +Q L+ P  ++L     ++++++ E   + G + +   
Sbjct: 612 HASDEKYNFE---MQQRNTVLRNQRLIIPRKLELTAVNESILLDNLEIFRKNGFEFQIDD 668

Query: 492 P----NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIR 547
                  + +  +P   +     + + ++I  + D+        R+  + A+ AC  SI 
Sbjct: 669 DAPATQKVKLVSVPTSKNWTFGVEDVEELIFMLSDAPGILCRPTRVRKMFASRACRMSIM 728

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            G  +   +M  ++R M +  +   C HGRPT   
Sbjct: 729 VGTALSHAQMQGIVRHMGEMKHPWNCPHGRPTMRH 763


>gi|189458898|ref|NP_001121616.1| PMS1 protein homolog 1 isoform c [Homo sapiens]
 gi|58736981|dbj|BAD89399.1| PMS1 nirs variant 2 [Homo sapiens]
          Length = 770

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 191/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  SQT       
Sbjct: 419 GHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 458


>gi|320580322|gb|EFW94545.1| MutL family mismatch-repair protein Pms1 [Pichia angusta DL-1]
          Length = 830

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 162/355 (45%), Gaps = 22/355 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M + ++    ++ I +G++I   S A KEL+ENSLDA +++V       G    +++DNG
Sbjct: 1   MTLTRIGTADVHNITSGQVIIDLSTASKELLENSLDAGATQVTITFKNHGIDSIEVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNT 117
            G+  E+      +H TSK+   +D +N+ T GFRGEAL S+ AV+ + + +        
Sbjct: 61  TGIDEEDFDGICMKHYTSKLRTFEDVANVRTLGFRGEALSSLCAVARVDITTSTKSIQPR 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
             ++      ++ S +  + N GT V + D+F  +P R    +K+ + E      +++  
Sbjct: 121 AYKLEYDHHGRLKSKQTASRNCGTTVLISDIFRNLPVRKTDLVKNGRREFQKAVTLLQSY 180

Query: 176 AIAYPKVSFTFSTIKSNRYK--MNFQSTNGNFPERISQVIGEDFINNAVELNE------- 226
           A+    +      + S   K  M   S +      +  V G + +     ++        
Sbjct: 181 ALIKVGLRLVVQHVDSRGRKGIMLATSGSKQLRSNVLSVFGANGMAGLEPIDFRLNISAR 240

Query: 227 -----KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLG 279
                    +++ GY    +F +G +  ++ + F+NGR V+ +     I   Y     L 
Sbjct: 241 FKLKACDMLLSVHGYLSNCSFGKGRSATDRQFWFVNGRPVKLQQFSKAITDVYKTFNHL- 299

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           + PV++L LE+DP+ +DVNV P K  I   N   I   + + + +  + + IS  
Sbjct: 300 QCPVILLDLELDPQFIDVNVTPDKRTIFLHNEAAIIEALKERVTEIFSSQDISIP 354



 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 18/265 (6%)

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           K    T+S    +  SS H      T LP  A+  +   +K  L+++  +   +    D 
Sbjct: 560 KSEKRTASATLTRTQSSLHD-----TELPIKASPGSFKMQKPKLEKSAGTRAAVDDITDE 614

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD----GLVIVDQHAAHERLIFEKM 443
           + +E    +  S+   +       Q +  +I+    D     L I+DQHA+ E+  FE+ 
Sbjct: 615 SDAERKLTLSVSKK-DFLEMQVIGQFNLGFILVTKQDKSGTHLFIIDQHASDEKYNFERY 673

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIRE 499
           +     T   +Q L+ P+ + L   +   IM + E   + G       +      +++  
Sbjct: 674 Q---TETVFNNQPLVIPQQLHLNIIDELAIMNNLEVFGKNGFGLRVDEDAQPGERLSLTS 730

Query: 500 IPAILSKKNIPQLLRDIIDEIIDS-STTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
           +P           L +++  + +          ++  +LA  AC  SI  G+ +    M 
Sbjct: 731 LPYSKDTTFGLSDLDELVHLVKEHHGRGVLRPSKVRAMLAMRACRTSIMIGKPLSHKTMT 790

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKL 583
            ++R +        C HGRPT   L
Sbjct: 791 SVVRNLAALDKPWNCPHGRPTMRHL 815


>gi|296815758|ref|XP_002848216.1| DNA mismatch repair protein [Arthroderma otae CBS 113480]
 gi|238841241|gb|EEQ30903.1| DNA mismatch repair protein [Arthroderma otae CBS 113480]
          Length = 763

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 171/381 (44%), Gaps = 50/381 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ L   +IN+IAAGEII  P  A+KELIENS+DA S+ VE                  
Sbjct: 36  KIQALDPDVINKIAAGEIIVAPMHALKELIENSVDAGSTSVEI----------------- 78

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
                   +A          +D S+I T+GFRGEAL SI  V+HLT+ ++   ++   + 
Sbjct: 79  --------LAF---------EDLSSIATYGFRGEALASISHVAHLTVTTKTAGSSCAWRA 121

Query: 122 AISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
             S  K+           +P+A   GT + V DLF+ +P R    +S   E   I D++ 
Sbjct: 122 HYSDGKLVPAKPGQNAAPKPIAGRRGTQITVEDLFYNVPTRRRAFRSASEEYAKILDIVG 181

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEI 231
           R A+     +F+          ++  S N +  +RI Q+ G    N   ++E++ K    
Sbjct: 182 RYAVHCSGTAFSCKKHGEAGVSLST-SINSSIVDRIRQLHGGAVANELVSLEVDGKKWGC 240

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
               +     ++        +FIN R+V+   I   +   Y+  +P G +P V L L I+
Sbjct: 241 HTSAWVTNANYH-AKRTTLLIFINHRSVESTAIKRAVEQTYSTFLPKGGHPFVYLDLNIE 299

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P+++DVNVHP K  + F N   I   I  +I+  +    + +S     + +        P
Sbjct: 300 PQRLDVNVHPTKREVNFLNEDEIIESICGAIRTKLA--AVDSSRTFMTQTL--LPGIRPP 355

Query: 352 KTHLPKYATSLTNTQEKLFLQ 372
           +       T+LT   E+L L+
Sbjct: 356 EPSPSTRDTALTGEGERLALR 376


>gi|171690870|ref|XP_001910360.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945383|emb|CAP71495.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1002

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 163/395 (41%), Gaps = 31/395 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +    ++QI AG++I       KEL+ENS+DA ++ +E      G    ++ DNG 
Sbjct: 6   TIKAIDSSAVHQIQAGQVIVDLCSVAKELVENSVDAGATTIEVRFKNQGLDSIEVQDNGA 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN--NT 117
           G+          +H TSK+S  DD S + TFGFRGEAL S+ A+S  ++++   +     
Sbjct: 66  GIAPHNYQSVALKHYTSKLSTYDDLSTLQTFGFRGEALSSLCALSKFSVITCTKEQVPRA 125

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    K+ S   V+   GT V V DLF  +P R     ++ + E   +  ++ + A
Sbjct: 126 AKLEFEMSGKLKSTSVVSGQRGTSVIVEDLFRNLPVRRRELERNIKREWGKVISLLNQYA 185

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVEL---------- 224
                V FT S   +   +M   ST GN    E I  V G   +N  + +          
Sbjct: 186 CIQTGVKFTVSQQPTKGKRMVLFSTKGNPTTRENIINVFGVKTMNALITMDLKLQLTPTA 245

Query: 225 ----------NEKSNEITLQGYTGIPT--FNRGNANQFYVFINGRTVQDKFILSTIRTAY 272
                     +  + E+ + G+   PT    R   ++   ++NGR       +      Y
Sbjct: 246 GPLVKGKARADGSNTEVRVLGHVSRPTPGEGRQTPDRQMFYVNGRPCGLPQFVKVFNEVY 305

Query: 273 AETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI- 331
                  + P +   +++D    DVNV P K  I   +   + + + +S+ +    + + 
Sbjct: 306 RSY-NASQLPFIFADIQLDTHLYDVNVSPDKRTILLHDQGQMLDNLRESLIELFETQDVT 364

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
             +S       + F +    ++  P    S++N +
Sbjct: 365 IPTSQARGLRQTPFKKPTLVRSQTPVSVASVSNRR 399



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I+DQHA+ E+  FE+++       + SQ L+ P+ + L   E  +I+E+   L R G 
Sbjct: 804 LFIIDQHASDEKYNFERLQSTTT---VQSQRLVQPKPLTLTALEEEIILENLVSLERNGF 860

Query: 486 KAE-------RFGPNAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE 534
                       G     +  +P          ++ +L+  + D    S+TT     ++ 
Sbjct: 861 VVSVDTSGDSPVGSRCQLVT-LPLSRETTFDLTDLEELIFLLGDNPSSSATTIPRPSKVR 919

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            + A  AC  SI  GR +   +M R++R M        C HGRPT   L
Sbjct: 920 KMFAMRACRSSIMIGRALSGRQMERVVRNMGGMEKPWNCPHGRPTMRHL 968


>gi|90192345|gb|ABD91835.1| mlh1 [Hartmannella vermiformis]
          Length = 210

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 9/207 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+KL   ++N+IAAGE+I RP+ AIKE++EN LDA ++ +  V+ GGG    QI DNG 
Sbjct: 1   RIKKLDPTVVNRIAAGEVIHRPANAIKEMMENCLDAGATNIRIVVKGGGIKMLQIQDNGC 60

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+  +R  TSK+   +D   I TFGFRGEAL SI  ++H+ +++    +    
Sbjct: 61  GIKKEDLPIVCERWTTSKLEKFEDLKKITTFGFRGEALASISHIAHVQIVTMTADSTCAY 120

Query: 120 QIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
           +      K+       +  +P A   GT + V D+F+ + +R   LK    E   I DV+
Sbjct: 121 RAYYQDGKMVGKNGESADPKPCAGVKGTQITVEDMFYNVTSRQKALKQPNDEYLKIVDVV 180

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
            + A+     SF    +  N   ++ Q
Sbjct: 181 TKYALHNYTASFNLKKMGENTSDVHTQ 207


>gi|308805450|ref|XP_003080037.1| putative PMS2 postmeiotic segregation incre (ISS) [Ostreococcus
           tauri]
 gi|116058496|emb|CAL53685.1| putative PMS2 postmeiotic segregation incre (ISS) [Ostreococcus
           tauri]
          Length = 1013

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 107/576 (18%), Positives = 210/576 (36%), Gaps = 50/576 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +   ++++I +G+++       KELIEN+LDA +  +E      G    +++D+G G
Sbjct: 12  IKPIDRAVVHRITSGQVVVDLRSVCKELIENALDATARSIEVRFKDHGVDVVEVSDDGRG 71

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGA 119
           +   ++ M   ++ TSK+   +D   + TFGFRGEAL S+  VS    + +R  ++  G 
Sbjct: 72  VRRGDVGMLTTKYATSKLERFEDLEALRTFGFRGEALSSLCGVSGEFEVTTRTEEDVAGL 131

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           +IA     ++ S    A + GT V V  LF  +P R    +++ + E      +++  A+
Sbjct: 132 KIAYDGEGRVMSESTTARSVGTTVRVGRLFEPLPVRRKELIRNAKREYGKALAIVQAYAL 191

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG---NFPERISQVIGEDFINNAVELNEK---SNEI 231
               V    +       + N   T G   +  E I  V G   I +  E+  +      +
Sbjct: 192 VSKSVRILCTHQSGKYGRTNVLHTRGEDASVRENIVTVFGSKMIASMREIELELEVGTGV 251

Query: 232 TLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            + G+   P    G A  ++ + ++NGR V        +   Y    P  + P+VVL  +
Sbjct: 252 RVSGFISEPRSGCGRAGTDRQFYYVNGRPVDLPRAARVVNETYRSFNP-NQAPMVVLDFQ 310

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN----KKGISTSSVLSKKMISSF 345
           +     DVNV P K  I   +   I   +   + +A +       ++  +  S +  S  
Sbjct: 311 LATNAYDVNVTPDKRKIMLHDEEAILAQMRDKLLEAFSPTRYTYAVTQEAPASAEKASPL 370

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
                      + A   T T  K   +E   +                           +
Sbjct: 371 ELSEQNGAEDDEDAEDETWTPAKGDDEETFAAVLRTASGQAEGSRGSKRDSSARSIDAQR 430

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                        ++      +      + E +  E        T   S ++   E  D 
Sbjct: 431 NLQTFGFTRDVTSVAIGGGWKIATTTQVSDEAMETEA--PAKAETTTVSPSMDEIEEDDE 488

Query: 466 LEGECALIMEHDED-----LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
                 L     ++        + ++ E  G     + E    L + +  +   +I+D+ 
Sbjct: 489 DAKRPRLEDTQKDEDERPSFAHVDVEFEDVGAT---VEE----LRRPDATE---EILDD- 537

Query: 521 IDSSTTYTLQDRIENILATM--------ACYGSIRS 548
                  ++   +E++LA          A   ++++
Sbjct: 538 ------GSIPFSMEDMLARRRNSHKRATAKQSAVKA 567



 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 61/301 (20%)

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           + +   +   +    +  S     A + +  K AT+  +  +         + +D   S 
Sbjct: 525 LRRPDATEEILDDGSIPFSMEDMLARRRNSHKRATAKQSAVKAFDSAHVSAADDDTAEST 584

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +   +   +     +   +       Q +  +I++   D L I+DQHA+ E   FE++++
Sbjct: 585 ERATAAARELERVFDKADFAKMRIVGQFNLGFILATLGDDLFIIDQHASDEIYNFERLQR 644

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP------------- 492
                 ++ Q L+ P  +DL   E   ++++     + G                     
Sbjct: 645 TTT---LSKQPLIHPVPLDLTASEEQTVLQNMPVFLKNGFGFCDVAESVPGADMNNSSVD 701

Query: 493 -----NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT------------------- 528
                 ++ +  +P + +       + +++  +     +                     
Sbjct: 702 PSARCGSLRLSAVPVLKNVVFDKTDVHELVSMLDRGQHSLPANSQLSIGLTRHDQRGDSS 761

Query: 529 ------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                    +    LA  AC G               +L  +        C HGRPT   
Sbjct: 762 SDVRVLRPAKTRAALAMKACRG---------------VLNNLTTLDAPWNCPHGRPTMRH 806

Query: 583 L 583
           L
Sbjct: 807 L 807


>gi|148232222|ref|NP_001079545.1| postmeiotic segregation increased 1 [Xenopus laevis]
 gi|28277270|gb|AAH44098.1| Pms1 protein [Xenopus laevis]
          Length = 925

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/481 (20%), Positives = 194/481 (40%), Gaps = 45/481 (9%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
             L    I+ +++ ++I      +KEL+EN+LDA ++ +E  +   G    ++ DNG G+
Sbjct: 2   HHLPSATIHLLSSSQVITSVVSVVKELVENALDASATSIEIKLENFGFDKIEVRDNGKGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
             +E  +   +H TSKI   +D   + T+GFRGEAL SI  V+ + + ++   +      
Sbjct: 62  KHDETSVMGIKHYTSKINSHEDLETLETYGFRGEALASICCVAEVHITTKTLADEFSKLY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE---QVETNLITDVIRRMAI 177
            +     + S +P  +  GT V V  LF  +P R  +  +    + E   I +++    I
Sbjct: 122 VLDSSGHVVSQKPSHLGQGTTVSVHKLFKNLPVRKQYYSTNKKCKEEIKKIQELLMAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQG 235
             P +   F+  K+  ++   +S   +       V+G   +N  V      ++ EI++ G
Sbjct: 182 IIPDLRILFTHNKALVWQ---KSKVSDHKMAFMSVVGSATMNGMVPFQYQSEAPEISING 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLL 287
           Y   P       +  ++ + ++FIN R V  K I+  +R  + +++  G    YPV  + 
Sbjct: 239 YLPKPDADITVTSLSSSEKSFLFINRRPVYHKEIMKMVRLYHTQSLNKGSPRCYPVFFMN 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           + +    +DVN+ P K+ I  +N   +   +   ++       I  +        +  H 
Sbjct: 299 IVLPASCLDVNLTPDKTKIMLQNKESVLLAVENVLRSVYPDSQILETDKDKMPEDTVTHN 358

Query: 348 DNAPKTHL----------------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
            +   TH+                P +  S+   ++ +   + +    D +   D     
Sbjct: 359 TDNSNTHVVENKITGCGGKSLSVCPSFLNSVQEQKQSVNSLQPQTFNKDTIFYSDNAEVA 418

Query: 392 DNDP---------VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ-HAAHERLIFE 441
            ++           E S      +         ++  S  T+ L  +D  H   E+  F+
Sbjct: 419 YSENETFDGFLVPTESSNTQDEAIADTGLHFAVSHSNSMDTESLNPIDSVHQVSEKDTFK 478

Query: 442 K 442
           K
Sbjct: 479 K 479


>gi|196013037|ref|XP_002116380.1| hypothetical protein TRIADDRAFT_30981 [Trichoplax adhaerens]
 gi|190580971|gb|EDV21050.1| hypothetical protein TRIADDRAFT_30981 [Trichoplax adhaerens]
          Length = 357

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 18/320 (5%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL   ++  I++G++I      IKELIENSLDA ++ ++  +   G    +I DNG G+ 
Sbjct: 3   KLVPSVVRLISSGQVIHSIQSVIKELIENSLDAGATSIDIKLENFGLDKIEIRDNGCGIP 62

Query: 65  SEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + E     Q+H TSK+ D  D S+I T+GFRGEAL S+ AVS ++++++   +N      
Sbjct: 63  ATETAYMGQKHYTSKLRDMQDLSSIMTYGFRGEALSSLCAVSDVSIVTKTQTDNVSTFYE 122

Query: 123 ISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS---EQVETNLITDVIRRMAIA 178
           +  +  I   +P     GT +   +LF ++P R    K+    + E   I D+I   AI 
Sbjct: 123 LHYDGTIKKSKPSHYGQGTSIIACNLFKSLPVRRQVYKTNKKCKEELKRIEDLIISYAII 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGY 236
            P V F     KS  ++   +    +    IS   G    +  + +N   +    +L+GY
Sbjct: 183 KPTVRFCLKHNKSVIWQ---KCQVADIGSAISVAFGRAVFSEMITINYKGEDPAFSLRGY 239

Query: 237 TGIPTFNRG-----NANQFYVFINGRTVQDKFILSTIRTAY--AETIPLGRYPVVVLLLE 289
                 N       N+++ +++IN R V  K +L  I+  Y   +   + ++P+ +L   
Sbjct: 240 IPKNYSNDELTGRSNSDRCFIYINQRPVMFKGVLQAIKHHYLACQKGQINKWPIAILDFT 299

Query: 290 IDPRQVDVNVHPAKSYIRFR 309
           ID + VDVNV  +K+ +   
Sbjct: 300 IDSKLVDVNVESSKTQVYLS 319


>gi|148667571|gb|EDK99987.1| postmeiotic segregation increased 1 (S. cerevisiae) [Mus musculus]
          Length = 923

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 103/442 (23%), Positives = 188/442 (42%), Gaps = 24/442 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++++L    +  +++ + I      +KELIENSLDA ++ +E  +   G    +I DNG 
Sbjct: 6   RMKQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIEVKLENYGFDKIEIRDNGE 65

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ + ++P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   ++   
Sbjct: 66  GIKAVDVPVMAVKYYTSKISSHEDLGNLTTYGFRGEALGSICNVAEVVVTTRTSADDFST 125

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRM 175
           Q  +     I S +P  +  GT V    LF  +P R  F    K  + E   + D++   
Sbjct: 126 QYVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISY 185

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITL 233
            +  P V  TF   K+  ++   +S   +    +  V+G   + N   VE + + ++I L
Sbjct: 186 GVLKPDVRITFVHNKAVIWQ---KSRVPDHRMALMSVLGTAVMGNMESVEQHCEQSQIYL 242

Query: 234 QGYTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVV 285
            G+           +     + ++FIN R V  K IL  IR  Y           YP+  
Sbjct: 243 SGFFPKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRRYYNLKCLKESTRLYPIFF 302

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           L +++   +VD+N+ P KS +  +N   +   +   +         + SS  ++  ISS 
Sbjct: 303 LKIDVPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESSENNRVDISSA 362

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-EATHY 404
           +   +           L N  E          T+ +    D +    +  + E     +Y
Sbjct: 363 NMVVSQTAETDV----LFNKMESFGNNYPNADTSAIHFQKDESRKNIDHHLNEQINIGNY 418

Query: 405 QLGIACAQIHQNYIISQTTDGL 426
             G     I+++   +   + L
Sbjct: 419 FDGHFSGDINKDTFQNIPMNNL 440


>gi|330946024|ref|XP_003306681.1| hypothetical protein PTT_19873 [Pyrenophora teres f. teres 0-1]
 gi|311315731|gb|EFQ85232.1| hypothetical protein PTT_19873 [Pyrenophora teres f. teres 0-1]
          Length = 1003

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 168/425 (39%), Gaps = 39/425 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I       KEL+ENS+DA ++ VE      G    ++ DNG 
Sbjct: 3   TIKAIEGRSVHQIQSGQVIVDLQSVCKELVENSIDAGATSVEVRFKNYGLDAIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS-RPPQNNTG 118
           G+  ++      +H TSK++  DD + + TFGFRGEAL S+ A+S+  +++ R      G
Sbjct: 63  GIAPDDYETIALKHYTSKLATYDDLALLQTFGFRGEALSSLCALSNFHIITARASDGPKG 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+ +   VA   GT V V  LF  +P R     K+ + E N +  ++   A
Sbjct: 123 TRLDFEQSGKLKATSVVAAKQGTTVVVETLFHNLPVRRKELEKNIKREYNKVLQLLNAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNE---- 230
                V F+ S       K    STN N    + IS V G   I   V L          
Sbjct: 183 CISVGVKFSVSNQIPKGKKTIAFSTNANTSTRDNISNVYGAKTIAALVPLTLDFAMDPSN 242

Query: 231 ---------------------ITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILST 267
                                + + G+   P     R   ++   F+N R+     +   
Sbjct: 243 RPGATQTARNCSTQEDPGSRTVKIIGHISRPVVGEGRQTPDRQMFFVNSRSCTLPQVAKA 302

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI- 326
               Y     + + P +   +++D    DVNV P K  I   + T +   +  S+ +   
Sbjct: 303 FNEVYKSY-NVTQSPFIFADIQLDTNAYDVNVSPDKRTIMLHDQTALLEKLKNSLIELFE 361

Query: 327 --NKKGISTSSVLSKKMISSFHQD-NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
             ++    +  + +K   S+F      P+      +    +  E+       +  N  +P
Sbjct: 362 GQDQSMPQSRLLGNKTPTSAFKPPTMQPRESAASMSDEDDSEPERSDQAHQAMPKNAEVP 421

Query: 384 SDDPT 388
           S   +
Sbjct: 422 SPQDS 426



 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 18/177 (10%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           SL NT +K  +  + +  ++  P +  + +       E              +      +
Sbjct: 814 SLANTADKSMV-PSSIQLDNSDPEERLSLTVTKSDFHEMRIVGQFNLGFIIAVRPPTSTA 872

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             T  L I+DQHA+ E+  FE++     +T +  Q L+ P  ++L   E  +I+ ++  L
Sbjct: 873 -PTSDLFIIDQHASDEKYNFERL---AATTVLVPQRLVHPHPLELTAVEKEIILANEHAL 928

Query: 481 HRLGIKA------------ERFGPNAIA-IREIPAILSKKNIPQLLRDIIDEIIDSS 524
              G               E    N  A +  +P        P  L +++  I+D+ 
Sbjct: 929 TANGFVIDMTTDPDPSADEESNPHNTAAHLTSLPMSKEITFSPTDLEELLALILDNP 985


>gi|225557600|gb|EEH05886.1| DNA mismatch repair protein pms1 [Ajellomyces capsulatus G186AR]
          Length = 1515

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 95/444 (21%), Positives = 176/444 (39%), Gaps = 43/444 (9%)

Query: 9   KIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            +++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG G++ ++ 
Sbjct: 457 ALVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGKGISPDDY 516

Query: 69  PMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISG 125
                +H TSK+S  DD S++ TFGFRGEAL S+ A+S+  +++         +++    
Sbjct: 517 ETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSNFHIITAQAHEVPKASRLEFEI 576

Query: 126 E-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVS 183
             K+ S   VA   GT   V +LF  +P R     K+ + E   +  ++   A     V 
Sbjct: 577 SGKLKSTHTVAGQKGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYACISTGVR 636

Query: 184 FTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK-------------- 227
           F           +   +T  N    E IS + G   +     L+ +              
Sbjct: 637 FNVKNQMPKGKSVVVFATKSNTSTNENISNIYGAKTLLALTPLDLELEFKPSGMGKRLIG 696

Query: 228 -----SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
                 N+I +QG+   P F   R   ++   F+N R      I       Y     + +
Sbjct: 697 AGTNDPNKIFVQGHISRPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF-NISQ 755

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
            P +    ++D    DVNV P K  I   +   +   +  S+            + L ++
Sbjct: 756 SPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKVSL------------TELFER 803

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              +  Q            +S TN  +  F+ +  + ++    S++   ++ N+  +E  
Sbjct: 804 QDQTVPQSQISGKQSMLQHSSGTNIPK--FISKKSVESSAPQRSEEIVEADGNNEEDEQR 861

Query: 401 ATHYQLGIACAQIHQNYIISQTTD 424
           A    +     +    Y I +  +
Sbjct: 862 AMRAFVQRFTGRSTTAYDIPEIPE 885



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 32/203 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
                  S   D + I+DQHA+ E+  FE+++     T + +Q L+ P+I+ L   E  +I
Sbjct: 1276 DPRAFPSHKNDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKILTLTAVEEEII 1332

Query: 474  MEHDEDLHRLGIKAE--RFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +++   L + G   E  R G   I     +  +P         Q L ++I  + +S  T 
Sbjct: 1333 IDNLPTLEKNGFVVEVDRSGDEPIGRRCKLTSLPLSKEMVFDTQDLEELIVLLGESPQTQ 1392

Query: 528  ----------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
                                      ++  + A  AC  SI  G+ + + +M+ ++R M 
Sbjct: 1393 SASSPSSSDSVLTPTTFGSKYIPRPSKVRKMFAMRACRSSIMIGKTLTNKQMDCVVRHMG 1452

Query: 566  KNPNSSQCNHGRPTFIKL-KLSD 587
                   C HGRPT   L  L +
Sbjct: 1453 MIDKPWNCPHGRPTMRHLMSLGE 1475


>gi|115744121|ref|XP_786592.2| PREDICTED: similar to PMS2 protein [Strongylocentrotus purpuratus]
 gi|115963172|ref|XP_001185952.1| PREDICTED: similar to PMS2 protein [Strongylocentrotus purpuratus]
          Length = 816

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 159/352 (45%), Gaps = 27/352 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K++ +  + ++QI +G+++   + AIKEL+ENSLDA ++ +E  +   G    +++DN  
Sbjct: 6   KVKAIDRRSVHQICSGQVVLNLATAIKELVENSLDAGATIIEIKLKDYGGESLEVSDNAS 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          +H TSK+ D  D S + TFGFRGEAL S+ A+S LT+++     + G 
Sbjct: 66  GVQECNFSGLTLKHHTSKLHDFSDLSTVDTFGFRGEALSSLCALSDLTIVTCHRSASVGT 125

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++    + KI    P     GT V +++LF T+P R   F ++ + E   +  V++   I
Sbjct: 126 KLVYDHDGKILKQVPCPRQQGTTVTLQNLFSTLPVRHKEFQRNLKKEFTKMVQVLQAYCI 185

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNE--------- 226
               V  T +       K    STNG     E ++ V G   I + +E ++         
Sbjct: 186 IASGVKLTCTNQTDKGKKSLVVSTNGTSTMRENVANVFGSKQIQSLLEFDQCKPTPEMCE 245

Query: 227 ---------KSNEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILSTIRTAYAET 275
                    +    ++ G+       +G   A++ Y FIN R      + S I   +   
Sbjct: 246 EYGIKPERLEKIPFSISGFVSKCDHGQGRSAADRQYYFINRRPCDFPKVCSLINEVFHMY 305

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
               +YP VV+ + +    VDVNV P K  +  +    +   +  S++    
Sbjct: 306 -NRHQYPFVVMDISLAKDAVDVNVTPDKRKVLVQEEKTLLAILKASLKTMFE 356



 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +     S + +   E     +       Q +  +II++    L I+DQHA  E+  FE +
Sbjct: 608 APSDNASAEEELSREISKDMFSKMEILGQFNLGFIIAKLGQDLFIIDQHATDEKYNFETL 667

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIRE 499
           ++    T +  Q L+ P  ++L     +++M+  E   + G       +      + +  
Sbjct: 668 QKH---TVLQGQRLIQPLPLELTAVNESILMDDVEIFKKNGFDFIINEDGRPTERVKLVS 724

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P   +       + ++I  + D+   +    ++  + A+ +C  SI  G  +   EM +
Sbjct: 725 QPFSKNWTFGKDDIDELIFMLSDAPGVHCRPTKVRQMFASRSCRKSIMIGTALNKAEMKK 784

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L+  M +      C HGRPT   L
Sbjct: 785 LVCHMGELEQPWNCPHGRPTMRHL 808


>gi|47222034|emb|CAG08289.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 854

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 29/377 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ ++I      +KEL+ENSLDA +S ++  +   G    ++ DNG G+
Sbjct: 2   KQLPPDTVRLLSSSQVITSVVNVVKELLENSLDAGASNIDVKLENYGLERIEVRDNGHGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTG 118
            + +  +   RH TSKI   +D  ++ T+GFRGEAL SI AV+    +T+ ++  + +  
Sbjct: 62  KAADTAVMAVRHFTSKICTHEDLGHLETYGFRGEALGSICAVAEVTFVTVTTKTEEEDIS 121

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRR 174
            Q  ++    I S +P  +  GT V V  +F T+P R  +    K  + E   + D++  
Sbjct: 122 TQYTLNLTGGIVSQKPSHLGQGTTVSVLRIFKTLPVRRQYYSSTKKRKEELKKVQDLLLA 181

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEIT 232
            A+  P++  T       +  +  ++   +    ++  +G   + N V  +   +  EI+
Sbjct: 182 YAMIKPELRLTLVHD---KVVVWQKAKVPDHRSALAATLGPSVVMNLVPCHHRQEQPEIS 238

Query: 233 LQGYTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG----RYPV 283
           L+G+   P       +    ++ + F+N R V  K I+  +R  Y    P      RYP+
Sbjct: 239 LEGFFPKPGADYSSTSTSGPDRTFTFVNNRPVHHKDIMKLLRQHYTAQYPADGARSRYPI 298

Query: 284 VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII------QSIQKAINKKGISTSSVL 337
           ++L + + P  VDVN+ P K+ +   +   +   +          +   +       S  
Sbjct: 299 LMLSVTVPPSAVDVNLTPDKTQVLLHDKEAVLTALEALLVSLYGFRPTEDPPAQRPPSSE 358

Query: 338 SKKMISSFHQDNAPKTH 354
           +        +DN P + 
Sbjct: 359 TWSAPPEPQRDNRPASS 375


>gi|66365814|gb|AAH96332.1| PMS1 protein [Homo sapiens]
 gi|66365840|gb|AAH96330.1| PMS1 protein [Homo sapiens]
          Length = 920

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 191/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  SQT       
Sbjct: 419 GHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 458


>gi|4505911|ref|NP_000525.1| PMS1 protein homolog 1 isoform a [Homo sapiens]
 gi|1709683|sp|P54277|PMS1_HUMAN RecName: Full=PMS1 protein homolog 1; AltName: Full=DNA mismatch
           repair protein PMS1
 gi|535513|gb|AAA63922.1| homolog of yeast mutL gene [Homo sapiens]
 gi|29725938|gb|AAO89079.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Homo
           sapiens]
 gi|119631288|gb|EAX10883.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae), isoform
           CRA_a [Homo sapiens]
 gi|119631290|gb|EAX10885.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae), isoform
           CRA_a [Homo sapiens]
 gi|307685747|dbj|BAJ20804.1| PMS1 postmeiotic segregation increased 1 [synthetic construct]
 gi|746340|prf||2017356A PMS1 gene
          Length = 932

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 191/460 (41%), Gaps = 37/460 (8%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YPV  L 
Sbjct: 239 FLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSV 336
           +++    VDVN+ P KS +  +N   +   +   +               NK  +S + +
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADI 358

Query: 337 LSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTY 389
           +  K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y
Sbjct: 359 VLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGY 418

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +  +   +          +  + ++  SQT       
Sbjct: 419 GHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 458



 Score = 38.5 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 29/301 (9%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R  + ++  I Q  Q ++           +  +    H+     ++ PK    L +  EK
Sbjct: 630 RYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQK-HKLKTSLSNQPKLDELLQSQIEK 688

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +  + V+  E     L         +  +  +   +++
Sbjct: 689 RRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLR--FPDAWLMTSKTEVML 746

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 747 LNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGST 806

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N + I  +   L    +  L ++I++ I++ +    
Sbjct: 807 YLSDPRLTANGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNRNAKEV 865

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKL 583
            + R   +++ +   A   S +    +   ++  ++  M+        +C HGRP F  L
Sbjct: 866 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHL 925

Query: 584 K 584
            
Sbjct: 926 T 926


>gi|325096304|gb|EGC49614.1| DNA mismatch repair protein [Ajellomyces capsulatus H88]
          Length = 1515

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 175/444 (39%), Gaps = 43/444 (9%)

Query: 9   KIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            +++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG G++ ++ 
Sbjct: 457 ALVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGKGISPDDY 516

Query: 69  PMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISG 125
                +H TSK+S  DD S++ TFGFRGEAL S+ A+S   +++         +++    
Sbjct: 517 ETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSSFHIITAQAHEVPKASRLEFEI 576

Query: 126 E-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVS 183
             K+ S   VA   GT   V +LF  +P R     K+ + E   +  ++   A     V 
Sbjct: 577 SGKLKSTHTVAGQKGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYACISTGVR 636

Query: 184 FTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK-------------- 227
           F           +   +T  N    E IS + G   +     LN +              
Sbjct: 637 FNVKNQMPKGKSVVVFATKSNTSTNENISNIYGAKTLLALTPLNLELEFKPSGMGKRLIG 696

Query: 228 -----SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
                 N+I +QG+   P F   R   ++   F+N R      I       Y     + +
Sbjct: 697 AGTNDPNKIFVQGHISRPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF-NISQ 755

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
            P +    ++D    DVNV P K  I   +   +   +  S+            + L ++
Sbjct: 756 SPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKVSL------------TELFER 803

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              +  Q            +S TN  +  F+ +  + ++    S++   ++ N+  +E  
Sbjct: 804 QDQTVPQSQVSGKQSMLQHSSGTNIPK--FISKKSVESSAPQRSEEIVEADGNNEEDEQT 861

Query: 401 ATHYQLGIACAQIHQNYIISQTTD 424
           A    +     +    Y I +  +
Sbjct: 862 AMRAFVQRFTGRSTTAYDIPEIPE 885



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 79/198 (39%), Gaps = 31/198 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
                  S   D + I+DQHA+ E+  FE+++     T + +Q L+ P+I+ L   E  +I
Sbjct: 1276 DSRAFPSHKNDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKILTLTAVEEEII 1332

Query: 474  MEHDEDLHRLGIKAE--RFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +++   L + G   E  R G   I     +  +P         Q L ++I  + +S  T 
Sbjct: 1333 IDNLPTLEKNGFVVEVDRSGDEPIGRRCKLTSLPLSKEMVFDTQDLEELIVLLGESPQTQ 1392

Query: 528  ----------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
                                      ++  + A  AC  SI  G+ + + +M+ ++R M 
Sbjct: 1393 SASSPSSSDSVLTPTTFGSKYIPRPSKVRKMFAMRACRSSIMIGKTLTNKQMDCVVRHMG 1452

Query: 566  KNPNSSQCNHGRPTFIKL 583
                   C HGRPT   L
Sbjct: 1453 MIDKPWNCPHGRPTMRHL 1470


>gi|23956336|ref|NP_705784.1| PMS1 protein homolog 1 [Mus musculus]
 gi|20810039|gb|AAH28939.1| Postmeiotic segregation increased 1 (S. cerevisiae) [Mus musculus]
          Length = 917

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 103/440 (23%), Positives = 186/440 (42%), Gaps = 24/440 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ + I      +KELIENSLDA ++ +E  +   G    +I DNG G+
Sbjct: 2   KQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGATSIEVKLENYGFDKIEIRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   ++   Q 
Sbjct: 62  KAVDVPVMAVKYYTSKISSHEDLGNLTTYGFRGEALGSICNVAEVVVTTRTSADDFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   + D++    +
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKNVQDLLISYGV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P V  TF   K+  ++   +S   +    +  V+G   + N   VE + + ++I L G
Sbjct: 182 LKPDVRITFVHNKAVIWQ---KSRVPDHRMALMSVLGTAVMGNMESVEQHCEQSQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FFPKHDADHNSTSLSTPERSFIFINSRPVHQKDILKLIRRYYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           +++   +VD+N+ P KS +  +N   +   +   +         + SS  ++  ISS + 
Sbjct: 299 IDVPSAEVDINLTPDKSQVLLQNKESVLIALENLMMTCYGPLPTTESSENNRVDISSANM 358

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-EATHYQL 406
             +           L N  E          T+ +    D +    +  + E     +Y  
Sbjct: 359 VVSQTAETDV----LFNKMESFGNNYPNADTSAIHFQKDESRKNIDHHLNEQINIGNYFD 414

Query: 407 GIACAQIHQNYIISQTTDGL 426
           G     I+++   +   + L
Sbjct: 415 GHFSGDINKDTFQNIPMNNL 434


>gi|213405255|ref|XP_002173399.1| DNA mismatch repair protein pms1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001446|gb|EEB07106.1| DNA mismatch repair protein pms1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 800

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 167/404 (41%), Gaps = 20/404 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR + +K I++I +G++I   + A+KEL+ENSLDA ++ +E      G    ++ DNG
Sbjct: 1   MSIRPIDKKSIHRICSGQVITDIASAVKELVENSLDAGATNIEIRFKHYGLDTIEVVDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NT 117
            G++S++     +++ TSK++  +D S + TFGFRGEAL S+ A+S L + +   Q    
Sbjct: 61  NGISSDDHACIAKKYYTSKLNEFEDLSKLGTFGFRGEALSSLCALSDLQVSTATAQETPK 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
           G  +  + E  +     V    GT++ V+++F T+P R     ++ + E +    +++  
Sbjct: 121 GHSLTFNHEGDLVKHAVVPFQKGTMITVQNIFSTLPVRRKHLERNYKKEYSKALVLLQMY 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITL 233
           A+                 +    S+N N    + I  V G    ++        N+  +
Sbjct: 181 AVVSVNKRILVYHQPKGGGRQLQLSSNKNPSMLKNIMNVFGTKVSSS----LTAWNDDFI 236

Query: 234 QGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            GY   P     + ++    +F+NGR +    +   I   Y     + + P   + L + 
Sbjct: 237 NGYISRPQIAGIKSSSEGQMLFLNGRPITHPKVHRLIMEVYRSF-SVNQSPFFAVNLVLP 295

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRN------FIIQSIQKAINKKGISTSSVLSKKMISSF 345
               D+  H       F     I         +    + ++++    T  VL K      
Sbjct: 296 EDCYDIMFHLTSGVFSFLTRKTIAKSSRFVTSLCDQTEYSLSQAKPYTPKVLQKPEFLRS 355

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
                  + L     +  N+   +   + RL  +  L + +   
Sbjct: 356 SPPLQSDSSLNSPLLAFGNSDTSVSSDKKRLLDSQSLDAFESAI 399



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 9/186 (4%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +       Q +  +II +    L I+DQHA+ E+  +EK++++     +++Q L+ P+ 
Sbjct: 604 DFLCMRIIGQFNCGFIIVRHAQNLFIIDQHASDEKYNYEKLKRNC---VLSAQDLVAPKQ 660

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDII 517
           ++L   E   +++H   + + G +         G     +  +P+          L +++
Sbjct: 661 LNLAVNEELALLDHLPIIEKKGFRVTVDETAPIGKRCKLV-SVPSSSHTIFDVSDLLEML 719

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             ++D         +IE +LA  AC  SI  GR +   EM  ++R +        C HGR
Sbjct: 720 GLLVDHPEMEPSSSKIEKMLAMKACRRSIMVGRSLTISEMTSVVRHLATLSKPWNCPHGR 779

Query: 578 PTFIKL 583
           PT   L
Sbjct: 780 PTMRHL 785


>gi|254572842|ref|XP_002493530.1| ATP-binding protein required for mismatch repair in mitosis and
           meiosis [Pichia pastoris GS115]
 gi|238033329|emb|CAY71351.1| ATP-binding protein required for mismatch repair in mitosis and
           meiosis [Pichia pastoris GS115]
 gi|328354646|emb|CCA41043.1| Mismatch repair endonuclease PMS2 [Pichia pastoris CBS 7435]
          Length = 903

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 179/376 (47%), Gaps = 18/376 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I ++SEK  +++++G++I   + A+KEL+EN++DA SS+++  I   G    Q++D+G G
Sbjct: 2   ITQISEKDAHKLSSGQLIIDLTAAVKELVENAIDANSSQIQITIKDYGLDSIQVSDDGVG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E+ P     + TSK+S  +D   + T GFRGEA+ S+  +S++T+++ P  +   ++
Sbjct: 62  ISVEDHPFVCSPYYTSKLSSFEDLQAVSTLGFRGEAMSSLCNISNVTIVTCPDPDVAASK 121

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIA 178
           +      K+     ++   GT V + ++F  +P R    +K  + +   +  V++  A+ 
Sbjct: 122 LEYDHSGKLIKSSSISAKKGTEVTISNIFENLPVRRKELVKHAKRDFYKLMTVLQSYAVI 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG-NFPERISQVIGE---------DFINNAVELNEKS 228
             +     + I +   K    +T G +    +  V G          +   +      + 
Sbjct: 182 NTQRRIMVNHITAKGKKNQMLATQGASLKGNLVNVFGAGALNGLIPINIQLSISAKYSEE 241

Query: 229 NEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
            E++++GY    +F +G A  ++   FINGR V    +   I  AY     L +YP+VVL
Sbjct: 242 FELSVEGYISNCSFGQGRASSDRQLFFINGRPVDLAQLSKKINEAYKTFNHL-QYPMVVL 300

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRN-FIIQSIQKAINKKGISTSSVLSKKMISSF 345
            L++DP  +D+NV P K  I   +   +    I   I +  ++  I      S  + SS 
Sbjct: 301 NLKLDPNYLDINVTPDKRTIMIHHEDQVLESLIDALINEFNSQSHIIPKQETSTLVDSSM 360

Query: 346 HQDNAPKTHLPKYATS 361
            Q     T   +   S
Sbjct: 361 LQRPTGDTSFRQRKRS 376



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 20/206 (9%)

Query: 400 EATHYQLGIACAQIHQNYII-----SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             T +       Q +  +II     ++    L IVDQHA+ E+  FE  +    +T+  S
Sbjct: 692 SKTDFLKMKVVGQFNLGFIIVTKKSTEGKQDLFIVDQHASDEKYNFENFQ---KNTQFLS 748

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIP 510
           Q L+ P+ I+L   +  L+ ++ E   + G       E      I +  IP         
Sbjct: 749 QPLVVPQFIELNLLDEVLVQDNIEIFSKNGFSIKFQEENEAGKRIQLLSIPMSKGTVFDI 808

Query: 511 QLLRDIIDEIIDSST-------TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
               +++  + ++          +    +I ++ A  AC  SI  G+ +    M R++  
Sbjct: 809 ADFHELVHLLKENQGISKENLLAHVRPSKIRSMFAMRACRASIMIGKSLSMKTMTRVVHH 868

Query: 564 MEKNPNSSQCNHGRPTFIKL-KLSDI 588
           +        C HGRPT   L +LSD+
Sbjct: 869 LSGLDKPWNCPHGRPTMRHLIELSDL 894


>gi|240278280|gb|EER41787.1| DNA mismatch repair protein [Ajellomyces capsulatus H143]
          Length = 1515

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 96/444 (21%), Positives = 175/444 (39%), Gaps = 43/444 (9%)

Query: 9   KIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            +++QI +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG G++ ++ 
Sbjct: 457 ALVHQIQSGQVIVDLCSVVKELVENSLDAGATSLDIRFKNNGLDLIEVQDNGKGISPDDY 516

Query: 69  PMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISG 125
                +H TSK+S  DD S++ TFGFRGEAL S+ A+S   +++         +++    
Sbjct: 517 ETVALKHYTSKLSKFDDLSSLQTFGFRGEALSSLCALSSFHIITAQAHEVPKASRLEFEI 576

Query: 126 E-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVS 183
             K+ S   VA   GT   V +LF  +P R     K+ + E   +  ++   A     V 
Sbjct: 577 SGKLKSTHTVAGQKGTTASVENLFNRLPVRRRELEKNIKREYGKVLGLLHAYACISTGVR 636

Query: 184 FTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK-------------- 227
           F           +   +T  N    E IS + G   +     LN +              
Sbjct: 637 FNVKNQMPKGKSVVVFATKSNTSTNENISNIYGAKTLLALTPLNLELEFKPSGMGKRLIG 696

Query: 228 -----SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
                 N+I +QG+   P F   R   ++   F+N R      I       Y     + +
Sbjct: 697 AGTNDPNKIFVQGHISRPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF-NISQ 755

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK 340
            P +    ++D    DVNV P K  I   +   +   +  S+            + L ++
Sbjct: 756 SPFIFADFKMDTNSYDVNVSPDKRTILLHDAGALIESLKVSL------------TELFER 803

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              +  Q            +S TN  +  F+ +  + ++    S++   ++ N+  +E  
Sbjct: 804 QDQTVPQSQVSGKQSMLQHSSGTNIPK--FISKKSVESSAPQRSEEIVEADGNNEEDEQT 861

Query: 401 ATHYQLGIACAQIHQNYIISQTTD 424
           A    +     +    Y I +  +
Sbjct: 862 AMRAFVQRFTGRSTTAYDIPEIPE 885



 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 32/203 (15%)

Query: 414  HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
                  S   D + I+DQHA+ E+  FE+++     T + +Q L+ P+I+ L   E  +I
Sbjct: 1276 DSRAFPSHKNDEVFIIDQHASDEKYNFERLQ---AETVVQNQRLVKPKILTLTAVEEEII 1332

Query: 474  MEHDEDLHRLGIKAE--RFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +++   L + G   E  R G   I     +  +P         Q L ++I  + +S  T 
Sbjct: 1333 IDNLPTLEKNGFVVEVDRSGDEPIGRRCKLTSLPLSKEMVFDTQDLEELIVLLGESPQTQ 1392

Query: 528  ----------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
                                      ++  + A  AC  SI  G+ + + +M+ ++R M 
Sbjct: 1393 SASSPSSSDSVLTPTTFGSKYIPRPSKVRKMFAMRACRSSIMIGKTLTNKQMDCVVRHMG 1452

Query: 566  KNPNSSQCNHGRPTFIKL-KLSD 587
                   C HGRPT   L  L +
Sbjct: 1453 MIDKPWNCPHGRPTMRHLMSLGE 1475


>gi|224055913|ref|XP_002195180.1| PREDICTED: PMS1 postmeiotic segregation increased 1 [Taeniopygia
           guttata]
          Length = 929

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 156/333 (46%), Gaps = 17/333 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L  + I  +++ ++I      +KELIENSLDA ++ ++  +   G S  ++ DNG G+
Sbjct: 2   KQLPGETIRLLSSSQVITSVVSVVKELIENSLDASATGIDIKLENYGFSKIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
             +++P+   +H TSKI  S+D   + T+GFRGEAL SI ++S + + ++   ++   Q 
Sbjct: 62  KVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSISEVLVTTKTAADDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           A+     ++S +P  +  GT V V +LF  +P R  F    +  + E   + D++    I
Sbjct: 122 ALDSNGHVTSKKPSHLGQGTTVTVLNLFKNLPVRKQFYSTNRKCKEELKKVQDLLTAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P +  T +  K+  ++   ++   +       ++G   +++ V      +  EI L G
Sbjct: 182 IKPDLRITLTHNKAVIWQ---KTRVSDHKMACMSILGTAVMSSMVPFQHCCEYPEINLSG 238

Query: 236 YTGI-----PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           +           +  ++ + ++FIN R V  K I         +      YPV  L + +
Sbjct: 239 FLPKAESDTSLTSLSSSERSFIFINNRPVLQKEIRQYYSQVTQKECTRS-YPVFFLSITV 297

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
               VDVN+ P K+ +       +   +   ++
Sbjct: 298 PASAVDVNITPDKTQVLLHYKESVLLAVENVLK 330


>gi|198419514|ref|XP_002120346.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 803

 Score =  237 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 156/347 (44%), Gaps = 26/347 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  + +K ++QI +G++I     A+KEL+ENSLDA ++ VE  +   G    ++ D+G G
Sbjct: 4   IEAIDKKSVHQICSGQVIVDLPTAVKELVENSLDAGATNVEIRLKSFGLLSIEVIDDGHG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          +H TSK+++  D   + TFGFRGEAL S+ AV  + + ++    ++G +
Sbjct: 64  VEERNFHGLTMKHHTSKLTNFTDLRLVETFGFRGEALSSLCAVCDVIICTKHNNASSGHR 123

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMAIA 178
           ++ + E  ++S  P A   GT V +R++F TIP R   F+K+ + E + + +++    + 
Sbjct: 124 MSFNHEGHMTSKTPCARRIGTSVILRNIFSTIPVRRKEFMKNIKKEYSKLLNLVSAYCVV 183

Query: 179 YPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE---------- 226
             +V  T S       +             E I  + G     N  E  +          
Sbjct: 184 STRVKITCSNETDGGKKTTSLSTGGATTMEENIISIFGSKQFRNLQEFRQDIPTQESCDT 243

Query: 227 -------KSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                    +   L G+  +P     R + ++ + F+N R +    +   +   Y     
Sbjct: 244 YNVSVASDWSIFKLHGFVSVPRHGAGRSSPDRQFFFVNSRPITLPRLSKIVNEVYHRF-N 302

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
             ++P + + +      VDVNV P K  + F+N  ++   +  S+ +
Sbjct: 303 RHQFPFIAINITTRHDLVDVNVTPDKRKVFFQNENLLFAIMTSSMTQ 349



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 96/251 (38%), Gaps = 11/251 (4%)

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           Q   P  +  +           +   +     +    +   T + + +  +  + + +Q 
Sbjct: 556 QPVLPDQNNGQPVLPDAKHPSNIEPSQPPTEYSLFRANLADTTTAEAELTKNLDKSSFQQ 615

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  ++I +  + L I+DQHA+ E   +E ++    +  + +Q L+ P  + L 
Sbjct: 616 MAPVGQFNLGFVIGRHGNDLFIIDQHASDEIYNYETLQ---ATQTLQTQNLVVPLKLQLT 672

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIA------IREIPAILSKKNIPQLLRDIIDEI 520
                +++E+ E   + G   +              +  IP        P  + ++I  +
Sbjct: 673 PAGKIVLIENLEIFRKNGFGFKISSDEGKMLFDRRQVSYIPTHNPHPLGPPDIDEMIFML 732

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            D+        R+  I AT AC  S   G  +   +M RL+R M +  +   C HGRPT 
Sbjct: 733 SDAPGVMCRPTRVRRIFATRACRMSTMIGTSLTKRQMLRLIRHMSEIVHPWNCPHGRPTM 792

Query: 581 IKLKLSDIEKL 591
             L   DI KL
Sbjct: 793 RHL--IDIGKL 801


>gi|57529802|ref|NP_001006508.1| PMS1 protein homolog 1 [Gallus gallus]
 gi|53130658|emb|CAG31658.1| hypothetical protein RCJMB04_9d22 [Gallus gallus]
          Length = 916

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 108/491 (21%), Positives = 202/491 (41%), Gaps = 32/491 (6%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++LS + +   ++ ++I      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLSAETVRLFSSSQVITSVVSVVKELIENSLDASATTIDIRLENYGFDKIEVRDNGNGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
              ++P+   +H TSKI  S+D   + T+GFRGEAL SI  +S + + +R   ++   Q 
Sbjct: 62  KVADVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICCISEVLVTTRTADDDISTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     ++S +P  +  GT V V  LF  +P R  F    +  + E   + D++    I
Sbjct: 122 VLDSSGHVTSQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTNRKCKEELKKVHDLLIAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQG 235
             P++  TF   K+  ++ N  S   +       V+G   + + V      +  EI L G
Sbjct: 182 IKPELRITFVHNKAVIWQKNRVS---DHKMACMSVLGTAVMGSMVPFQHCCEDPEINLSG 238

Query: 236 YTGI-----PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           +           +  ++ + ++F+N R V  K IL    +   +      YPV  L + +
Sbjct: 239 FLPKAESDSSLTSLSSSERSFIFVNSRPVHQKEILKY-YSVLMQKDSTRLYPVFFLNITV 297

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
               VDVNV P K+ +  +    +   +   ++        + S   +K  ++S      
Sbjct: 298 PASAVDVNVTPDKTEVLLQYKESVLLAVENVLKSLYGPLPATVSGEANKTDVTSEDMFVH 357

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV--EESEATHYQLGI 408
                          Q  + + E   S N+ L +     S ++D    +  + T   L  
Sbjct: 358 KAG------------QTDVVVNEKEPSGNNDLHAHTSFLSFNSDVQSYQAGKNTEICLNH 405

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEG 468
                   +   +  +            RL+ E+ ++  N+T I S +          EG
Sbjct: 406 QIFSGDTVHSCLEEKEASKNDAFQEGSLRLLCEEEQKGQNTTGIPSNSAPVDPGSK-EEG 464

Query: 469 ECALIMEHDED 479
            C L  ++ E+
Sbjct: 465 GCLLSSDNAEE 475


>gi|169606051|ref|XP_001796446.1| hypothetical protein SNOG_06058 [Phaeosphaeria nodorum SN15]
 gi|160706903|gb|EAT87122.2| hypothetical protein SNOG_06058 [Phaeosphaeria nodorum SN15]
          Length = 1051

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 95/419 (22%), Positives = 168/419 (40%), Gaps = 46/419 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV------------ETVIAGG 49
            I+ +  + ++QI +G++I       KEL+ENS+DA ++ V            E      
Sbjct: 3   SIKPIEGRSVHQIQSGQVIVDLQSVCKELVENSIDAGATTVGVVGGRRLTCDAEVRFKNN 62

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLT 107
           G    ++ DNG G++ ++      +H TSK+S  DD S++ TFGFRGEAL S+ A+S+  
Sbjct: 63  GLDAIEVQDNGGGISPDDYETIALKHYTSKLSSYDDLSSLQTFGFRGEALSSLCALSNFH 122

Query: 108 LMS-RPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVE 164
           +++ RP   + G ++      K+     VA   GT V V  LF+ +P R     K+ + E
Sbjct: 123 IITARPTDGSKGTKLEFEQSGKLKGTSVVAAKQGTTVVVETLFYNLPVRRKELEKNIKRE 182

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
            N +  ++   A     V FT  T    +      ++N +  + IS V G   I+  + L
Sbjct: 183 YNKVLQLLNAYACISVGVKFTRLTDSRKKTIAFSTNSNASTRDNISNVYGAKTISALIPL 242

Query: 225 NEKSNE-------------------------ITLQGYTGIPTF--NRGNANQFYVFINGR 257
           N +                            + L G+   P     R   ++   F+N R
Sbjct: 243 NLEFEMDASNRPGSTQTARNWSTQEDPGSRTVKLVGHISRPVVGEGRLTPDRQMFFVNSR 302

Query: 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                 +   I   Y     + + P +   +++D    DVNV P K  I   +  ++   
Sbjct: 303 PCNLPQVAKAINEVYKSY-NITQSPFIFADIQLDTNAYDVNVSPDKRTIMLHDQVVLLES 361

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
           + +++         S          +       P T +P+ +T+     E+   +E   
Sbjct: 362 LKEALLDLFEGHDQSVPQAQLSVKKTPASAFKTP-TLVPRESTATLMVDERSDSEEPAA 419



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 26/205 (12%)

Query: 401  ATHYQLGIACAQIHQNYII-------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
               +       Q +  +II       +  T  L I+DQHA+ E+  FE++     +T + 
Sbjct: 805  KPDFNEMRIIGQFNLGFIIAVRPPTTTSPTSDLFIIDQHASDEKYNFERL---SATTTLV 861

Query: 454  SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIPAILSK 506
            SQ L+ P  ++L   E  +I+ ++  L   G   E         G  A  I  +P     
Sbjct: 862  SQRLVHPHPLELTAVEEEIILANEHALTANGFVVEMDTADDLDSGHRAKLI-SLPMSKEV 920

Query: 507  KNIPQLLRDIIDEIIDSSTTYTL--------QDRIENILATMACYGSIRSGRKMQSIEMN 558
               P  L +++  I+D+  + T+          ++  +LA+ AC  S+  G+ +++  M 
Sbjct: 921  TFTPTDLEELLALILDNPPSSTMATSTHIPRPSKVRKLLASRACRSSVMIGKTLKTARMR 980

Query: 559  RLLREMEKNPNSSQCNHGRPTFIKL 583
             ++R M        C HGRPT   L
Sbjct: 981  EIVRHMGSMDKPWSCPHGRPTMRHL 1005


>gi|149240297|ref|XP_001526024.1| hypothetical protein LELG_02582 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450147|gb|EDK44403.1| hypothetical protein LELG_02582 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 948

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 180/400 (45%), Gaps = 28/400 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ ++   I++I +G++I      +KEL+EN++DA + ++    A  G     + DNG
Sbjct: 1   MSIQGINATDISKITSGQVIIDLRSIVKELVENAIDASAKKILVNFANYGIDSITVQDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            G++  +      R  TSKI   +D S + T GFRGEAL SI A++  +++ +R   +N 
Sbjct: 61  KGISENDFDTVCLRSHTSKIKEFEDLSKLGTLGFRGEALNSICALANKVSIKTRTLDSNP 120

Query: 118 GAQIAISGE------KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITD 170
              I    +             ++   GT+V +  +F   P R  NF+K+ + E +    
Sbjct: 121 ICHILDFDQFGALVKNTKKRGDMSTPSGTVVTIESIFKKFPVRWKNFIKNSKKEFHKTVS 180

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP---ERISQVIGEDFINNAVELNEK 227
            I    + YP + F  + + + +  +   S  G      E +  + G +   N +E+N +
Sbjct: 181 FITNYLLIYPTIKFEVTNVNNGKRSLILSSRGGENNTSTENLISIFGTNGNTNLLEINLQ 240

Query: 228 SN-EITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
            N +I++ G+    +F  G +  ++ ++F+N R +  K +   I   Y     + ++PV 
Sbjct: 241 INKDISIAGHISSYSFGLGRSTQDRQFLFVNKRPIVYKKLAKIINEIYKSFNHV-QFPVY 299

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           +L L+I+P  +DVN+ P K+ +   N   +   I +S+      K               
Sbjct: 300 ILNLDINPEAIDVNLLPDKTSVLVHNEDKVLELIRESLITFYETKDEVV----------- 348

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
             ++   +  +P    S+     KL   + + + N+ L +
Sbjct: 349 IPRNTQSQYTIPSRTHSMDEASTKLDQSKRQSNINETLKA 388



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 8/199 (4%)

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S D   + + + T +       Q +  +I+      L I+DQHA+ E+  FE++ + F  
Sbjct: 738 SLDEQEIYQIKKTDFLDMKLIGQFNLGFILVCHGSNLFIIDQHASDEKFNFERLLETFA- 796

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILS 505
             +  Q L+TP  +DL   +  L+++H++     G K     ++     I++  +P   +
Sbjct: 797 --VNYQPLITPLFVDLNVIDEMLVLDHEQIFQNNGFKISVDYDKPAGAKISLTSLPVYKN 854

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQ-DRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
                    ++I+ I +  +   ++  +I  I+A  AC  SI  G  +    M +++  +
Sbjct: 855 IMFSVDDFYELINLINEQPSNRNIKCSKIRKIVAMKACRSSIMIGSFLSKQRMQKVVANL 914

Query: 565 EKNPNSSQCNHGRPTFIKL 583
            K      C HGRPT   L
Sbjct: 915 SKLDKPWNCPHGRPTMRHL 933


>gi|115384270|ref|XP_001208682.1| hypothetical protein ATEG_01317 [Aspergillus terreus NIH2624]
 gi|114196374|gb|EAU38074.1| hypothetical protein ATEG_01317 [Aspergillus terreus NIH2624]
          Length = 1049

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/452 (20%), Positives = 173/452 (38%), Gaps = 33/452 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG 
Sbjct: 3   TIKAIEARSVHQIQSGQVIVDLCSVAKELVENSLDAGATSIEVRFKNSGLDAIEVQDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTG 118
           G++ +       +H TSK+S  DD S ++TFGFRGEAL S+ A++   +++    +    
Sbjct: 63  GISRDNYENIALKHYTSKLSSFDDLSRLNTFGFRGEALSSLCALADFHIVTAQAHEAPKA 122

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+   + VA   GT   V  +F  +P R     K+ + E   + +++   A
Sbjct: 123 NRLEFEPSGKLKRTQIVAGQKGTTASVEGIFKRLPVRRRELEKNIKREYGKVLNLLHAYA 182

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELN--------- 225
                V F+          +   ST GN    E I+ V G   +   + L+         
Sbjct: 183 CVSTGVRFSVKNTVGKTRNVVVFSTKGNPTTKENIANVYGAKTLLALIPLDLTLEFEPSV 242

Query: 226 --------EKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                   E  N+I ++G+   P F   R   ++   F+N R      I       Y   
Sbjct: 243 AGRRASAGEALNQIRVRGHVSRPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF 302

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
             + + P V     +D    DVNV P K  I   +   +   +    + ++ +   S   
Sbjct: 303 -NVSQSPFVFADFHMDTNAYDVNVSPDKRTILLHDAGALIESL----KTSLTEVFESADQ 357

Query: 336 VLSKKMISSFHQDNAPKTH--LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            + +  +S   Q  +         +  S    +E     +     +++  S   ++    
Sbjct: 358 TVPQSQVSGAKQPGSKPNSTLFQSFLASKHAPEETPADGDGSGVADEIGSSQASSHGRMK 417

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
             + +  +   Q        H +    ++   
Sbjct: 418 SFLSDLGSRPGQADTKSTPAHVDTSTQESQPM 449



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 121/326 (37%), Gaps = 41/326 (12%)

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P  V+ N+       +  +   ++  I Q+ ++A   +G + +        +        
Sbjct: 679 PPPVETNMGEE--EKKKHDEAEVQRLIQQAEEQASLPQGNNVNRANKMNKGAYHRDSTVQ 736

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES---EATHYQLGI 408
                  + S   +      +  RL        +D T S++      S       +    
Sbjct: 737 LVSTMDGSVSRVQSLMGKLQESARLPGRIGGDEEDATGSQETAEERLSLTVSKDDFAQMR 796

Query: 409 ACAQIHQNYIISQT-------------TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
              Q +  +I++                D L I+DQHA+ E+  FE+++     T + +Q
Sbjct: 797 IIGQFNLGFILATRSSRDSSNSAISASKDELFIIDQHASDEKFNFERLQ---AETVVQNQ 853

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIREIP----AIL 504
            L+ P+ +DL   E  +++E+   L + G   E         G     +  +P     + 
Sbjct: 854 RLVQPKRLDLTAVEEEIVIENQAALEKNGFIVEVDDSGDEPIGRRCKLV-SLPLSKEVVF 912

Query: 505 SKKNIPQLLRDIIDEIIDSSTTY-------TLQDRIENILATMACYGSIRSGRKMQSIEM 557
             +++ +L+  ++ E+  + TT            ++  + A  AC  SI  G+ + + +M
Sbjct: 913 GVRDLEELIV-LLSEMPATGTTGGASDRYVPRPSKVRKMFAMRACRSSIMIGKTLTTKQM 971

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
            R++R M        C HGRPT   L
Sbjct: 972 ERVVRNMGTIDKPWNCPHGRPTMRHL 997


>gi|189197831|ref|XP_001935253.1| DNA mismatch repair protein PMS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187981201|gb|EDU47827.1| DNA mismatch repair protein PMS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 848

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 166/422 (39%), Gaps = 38/422 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I       KEL+ENS+DA ++ VE      G    ++ DNG 
Sbjct: 6   TIKAIEGRSVHQIQSGQVIVDLQSVCKELVENSIDAGATSVEVRFKNYGLDAIEVQDNGS 65

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS-RPPQNNTG 118
           G+  ++      +H TSK++  DD + + TFGFRGEAL S+ A+S+  +++ R    + G
Sbjct: 66  GIAPDDYETIALKHYTSKLATYDDLALLQTFGFRGEALSSLCALSNFHIVTARASDGSKG 125

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
            ++      K+ +   VA   GT V V  LF  +P R     K+ + E N +  ++   A
Sbjct: 126 TRLDFEQSGKLKATSVVAAKQGTTVVVETLFHNLPVRRKELEKNIKREYNKVLQLLNAYA 185

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVELNEKSNE---- 230
                V F+ S       K    STN N    + IS V G   I   V L  +       
Sbjct: 186 CISVGVKFSVSNQIPKGKKTIAFSTNANTSTRDNISNVYGAKTIAALVPLALEFAMDPSN 245

Query: 231 ---------------------ITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILST 267
                                + + G+   P     R   ++   F+N R      +   
Sbjct: 246 RPGATQTARNWSTQEDPGSRTVKIVGHISRPVVGEGRQTPDRQMFFVNSRPCTLPQVAKA 305

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI- 326
               Y     + + P +   +++D    DVNV P K  I   + T +   +  S+ +   
Sbjct: 306 FNEVYKSY-NVTQSPFIFADIQLDTNAYDVNVSPDKRTIMLHDQTALLENLKNSLIELFE 364

Query: 327 --NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
             ++    +  +  K   S+F      +    +         +    +EN  +T + +  
Sbjct: 365 GQDQSMPQSQLLGKKTPTSAFKPPTMQRRDSEERVVRPLPRSKVESNRENDQTTEERMCH 424

Query: 385 DD 386
             
Sbjct: 425 PK 426



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 119/342 (34%), Gaps = 42/342 (12%)

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
           P  +   +     F   R ++     +TI     ++I         L  + +    +   
Sbjct: 515 PQKSLSQSTIQNAFDRMRPMRTAVQQATITELDTKSISDAEE---ELQADPESSDDEYMD 571

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKA-----INKKGISTSSVLSKKMISSFHQDNAPKTH 354
               +  + R    I   I ++ + A     +N K +     + +K   + + +   +T 
Sbjct: 572 D---TEKKAREEAKIVQLITEAEEAAAQPTEMNVKRMKNMFKIMQKKYWTINLERVIETD 628

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP--VEESEATHYQLGIACAQ 412
               +  +   Q+ +       +   +LPS    +  D +         + +       Q
Sbjct: 629 AESISRDIHELQKAIDTSPANTTDKSMLPSSAQLHDADPEERLSLTVTKSDFHDMRIVGQ 688

Query: 413 IHQNYII-------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
            +Q +II       +  T  L I+DQHA+ E+  FE++     +T + SQ L+ P  ++L
Sbjct: 689 FNQGFIIAVRPPTSTAPTSDLFIIDQHASDEKYNFERL---AATTVLVSQRLVHPHPLEL 745

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNA-----------IAIREIPAILSKKNIPQLLR 514
              E  +I+ ++  L   G   E    +              +  +P        P  L 
Sbjct: 746 SAVEKEIILANEHALLANGFVIETTDADEETPNPNNTTTTAHLTSLPMSKEITFSPTDLE 805

Query: 515 DIIDEIIDSSTTY--------TLQDRIENILATMACYGSIRS 548
           +++  I+D+  +             ++  +LA+ AC  S+  
Sbjct: 806 ELLALILDNPPSSSTSTSPYIPRPTKVRKLLASRACRSSVMI 847


>gi|221101995|ref|XP_002170168.1| PREDICTED: similar to PMS1 protein homolog 1 [Hydra magnipapillata]
          Length = 425

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 14/323 (4%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           KL    +  I + ++I      +KEL+ENSLD+    ++  +   G S  ++ DNG G+ 
Sbjct: 3   KLPLSTVELITSTQVIISLVSVVKELVENSLDSGCDSIDVRLDENGLSKIEVQDNGTGIA 62

Query: 65  SEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            E+I    ++H TSKI +  D  N+  +GFRGEAL SI +V  + + ++   +    + +
Sbjct: 63  LEDIQYVCKQHYTSKIRNELDLLNLTQYGFRGEALFSICSVGDVFITTKTKADQVSKKYS 122

Query: 123 ISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN---LITDVIRRMAIA 178
            S   +I S      N GTIV V +LF  +P R    ++ +        I +++    IA
Sbjct: 123 FSKYGEIISSEITHHNVGTIVTVLNLFKALPVRRKLYENNRKVREEVKCIEELLISYGIA 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
            PK+  T    K+  ++   +    N    +S + G + +NN  E+  K  E+ ++ Y  
Sbjct: 183 MPKLRITLKYDKNIIWR---KDRAANCSLVLSALFGSNVLNNLKEIEYKDEELQVKAYIP 239

Query: 239 I-----PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
                     R  A++ ++ +N R V+ K I S ++T+Y      G+YP  VL++E+ P 
Sbjct: 240 KVGSASNVVGRTLADRMFIIVNKRPVRSKEIKSLLKTSYNNNCCQGKYPFSVLMIEVKPD 299

Query: 294 QVDVNVHPAKSYIRFRNPTIIRN 316
           Q+DVN+HP K  I  +N   I N
Sbjct: 300 QIDVNLHPNKMDILLQNTVSILN 322


>gi|145348213|ref|XP_001418550.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578779|gb|ABO96843.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 829

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 148/346 (42%), Gaps = 22/346 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+++ + ++++I +G+++   +  +KEL+EN+LDA ++ VE  +   G    +++DNG G
Sbjct: 1   IKRIDDVVVHRICSGQVVLSLASCVKELVENALDAGATNVEIRLKDHGADVVEVSDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGA 119
           +          ++ TSK+   +D   + TFGFRGEAL S+  +S   ++ +R   + +G 
Sbjct: 61  VPKASFEALTTKYATSKLKAFEDLETLRTFGFRGEALSSLCGISGEFSVTTRTADDASGT 120

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           +I    +  I S   V  + GT   V  LF  +  R     ++ + E      V++  A+
Sbjct: 121 KIVYDAKGAIVSESVVPRSVGTTATVCRLFEPLAVRRKEFLRNVKREYGRALHVVQAYAL 180

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG----NFPERISQVIGEDFINNAVELNE------- 226
               V    +       + N   T G    +  E +  V G   +    E++        
Sbjct: 181 MSKSVRILCTHQSGKYGRTNVLHTRGGEEASVRENVVTVFGAKMVAAMQEIDFDLSDADG 240

Query: 227 ---KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
               S    + GY        G A  ++ + ++NGR V    +   +   Y    P  + 
Sbjct: 241 DGSSSLTCRIVGYVSKAQNGCGRAGTDRQFYYVNGRPVDLPRVAKVLNETYRSFNP-NQA 299

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           P+ VL +++     DVNV P K  +       +   + + + +A  
Sbjct: 300 PMAVLDVQLPTDSYDVNVTPDKRKVMLHQEQELLTKMKEKLTEAFA 345



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 75/226 (33%), Gaps = 49/226 (21%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +       Q +  +I++   D L IVDQHA+ E   FE++++      +T Q L+ P  
Sbjct: 606 DFAKMRIVGQFNLGFILAVLGDDLFIVDQHASDEIYNFERLQRTST---LTRQPLIHPVP 662

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGP------------------NAIAIREIPAIL 504
           +DL   E   ++++     + G                           A+ +  +P + 
Sbjct: 663 LDLTASEEQTVLQNMPVFLQNGFGFCDVAETVPGADMNNSSIDPTARCGALRLNAVPFLK 722

Query: 505 SKKNIPQLLRDIIDEIIDSSTTYT----------------------------LQDRIENI 536
           +       +++++  +     +                                 +    
Sbjct: 723 NVAFDKSDVQELVSMLDQGQHSLPSKSQLSIGLAREDAAAARSRRDASPRVLRPSKTRAA 782

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
           LA  AC  SI  G  + +  M R+LR +        C HGRPT   
Sbjct: 783 LAMKACRSSIMIGDALDARSMRRVLRNLGALDAPWNCPHGRPTMRH 828


>gi|240952144|ref|XP_002399323.1| DNA mismatch repair protein, putative [Ixodes scapularis]
 gi|215490529|gb|EEC00172.1| DNA mismatch repair protein, putative [Ixodes scapularis]
          Length = 837

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 168/392 (42%), Gaps = 27/392 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +    +++I +G+++   ++A+KEL+ENS+DA +  +   +   G    ++ D+G G
Sbjct: 5   IKAIDRASVHRICSGQVVLNLAMAVKELVENSIDAGARSISVRLKEYGSKLVEVVDDGDG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +          ++ TSK+ D  D  ++ TFGFRGEAL S+ A+ +L++ +       G  
Sbjct: 65  VEEANFEGLTLKYHTSKLRDFSDLQDVATFGFRGEALSSVCALCNLSISTCHKDAAQGTL 124

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +       I+S +P A    T V + +LF T+P R   FL + + E N +  ++    + 
Sbjct: 125 LKFDHHGAITSRKPCAREASTTVSLENLFVTLPVRHKEFLSNLKREFNKMAALLTGYCLV 184

Query: 179 YPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------- 229
              V+ T +       +  +     + +  ERIS V G    +  +E+            
Sbjct: 185 ATGVNITCTNHLDGGRKQMVLSSQGSTSVRERISAVFGAKETSRLLEIEHCPPSDEVLEE 244

Query: 230 ------------EITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                        + ++G+         R ++++ ++FIN R  +   +   +  A   T
Sbjct: 245 FSLTDAVLDDSARLRIEGFVSTCAHGGGRSSSDRQFIFINSRPCELPKVKRLLVNAVYHT 304

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
               +YP + + + +  R VDVNV P K  +   +   +   +        +++  S   
Sbjct: 305 FNRDQYPFLFINIHLQRRDVDVNVTPDKRSVFLHHEKHLLALVKVGTSSVESEEASSFDV 364

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
             +     + ++++A      + ++  T +Q 
Sbjct: 365 TSTSAFEPNSNEEDALDVDRSQMSSQATTSQA 396



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 8/208 (3%)

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
              S     + +N+  +E     +       Q +  +I+++  D L IVDQHAA E+  F
Sbjct: 625 AAISPSDNAAAENELAKEISKDMFGQMEIIGQFNLGFIVAKLGDDLFIVDQHAADEKYNF 684

Query: 441 EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE----RFGPNAIA 496
           E++ +D        Q LL P+ ++L     ++++E+ E   + G   E    +     + 
Sbjct: 685 ERLERDTVMKG---QKLLAPQPLELTAVNESVLIENREVFEKNGFAFEVDESQPSGRKVK 741

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           +  +PA  S +   +    +   ++    T     ++  + A+ AC  S+  G  +   E
Sbjct: 742 LVSVPASGSWQFGKEGKCRLFRRLVYCQHTVCRPSKVRQMFASRACRKSVMVGMPLTISE 801

Query: 557 -MNRLLREMEKNPNSSQCNHGRPTFIKL 583
              +++  + +  +   C HGRPT   L
Sbjct: 802 SFFQVVSHLGELHHPWNCPHGRPTMRHL 829


>gi|126326745|ref|XP_001378642.1| PREDICTED: similar to homolog of yeast mutL gene [Monodelphis
           domestica]
          Length = 936

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 19/358 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ ++I      IKELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQVITSVISVIKELIENSLDAGATNIDVKLENYGFDKIEVRDNGDGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   +H TSKI   +D  N+ T+GFRGEAL SI  ++ + + ++   +N   Q 
Sbjct: 62  KAIDAPVMAIKHYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTKTAADNFSTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    +  + E   I D++    I
Sbjct: 122 VLDSSGHIVSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTARRCKDELKKIQDLLIAYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P++   F+  K   ++   +S   +    +  V+G   ++N    E + + ++I L G
Sbjct: 182 LKPELRIIFTHNKVIIWQ---KSRVSDHKTALMAVLGTSIMSNMAAFEHHYEESQIYLSG 238

Query: 236 YTGIPTFNRGNAN-----QFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +      +    N     + ++FIN R V  K IL  IR  Y E         YPV  + 
Sbjct: 239 FLPKLDSDHSLTNLSTPERSFIFINNRPVHQKDILKLIRHYYTEKCLKESTRSYPVFFMK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           + +    VDVN+ P KS +  +N   +   +   +         + S   +K  +SS 
Sbjct: 299 IVVPAADVDVNLTPDKSQVLLQNKESLLIAVENVLTSWYGPLISTDSHENNKADVSSV 356


>gi|301766588|ref|XP_002918705.1| PREDICTED: PMS1 protein homolog 1-like isoform 1 [Ailuropoda
           melanoleuca]
 gi|281351918|gb|EFB27502.1| hypothetical protein PANDA_007219 [Ailuropoda melanoleuca]
          Length = 930

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 171/421 (40%), Gaps = 19/421 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDTPVMAIKYYTSKIGSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            + G   I S +P  +  GT V    LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDGNGHIISQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   ++   +    +  V+G   + N    + + + ++I L G
Sbjct: 182 LKPDLRIVFIHNKAVIWQ---KTRVSDHKMALMSVLGTAVMGNMESFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKRDADHSLTSLSTPERSFIFINSRPVHQKDILKLIRQYYTLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           +++    VDVN+ P KS +  +N   +   +   +         + S   +K  +SS   
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGSLPSTNSYENNKTDVSSADM 358

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                T        + ++       +  +        DD +    N  +           
Sbjct: 359 VVNNTTETDVLFNKMESSGNNYANVDTSVIPFQNDVHDDRSGKNTNYCLNPQIHVDDHYD 418

Query: 408 I 408
            
Sbjct: 419 E 419


>gi|323142174|ref|ZP_08077010.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413346|gb|EFY04229.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 167

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 2/159 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R L     NQIAAGE++E+P+  +KEL+EN+LDA + ++E  I  GG  + ++TDNG GM
Sbjct: 8   RLLDTNTANQIAAGEVVEKPASVVKELVENALDAGADKIEVTIFAGGTEYIRVTDNGCGM 67

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  +  MAV RH TSK+  ++D  +++T GFRGEALPSI +VS+ TL++RP        +
Sbjct: 68  SEADAKMAVLRHATSKLTKAEDLLSLNTLGFRGEALPSIASVSNFTLLTRPESEEFATSV 127

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
            I G + + V     + GT V V +LFF +PAR  FLK+
Sbjct: 128 HIDGGENTEVTASGGSTGTTVIVENLFFNVPARRKFLKT 166


>gi|124512056|ref|XP_001349161.1| mismatch repair protein pms1 homologue, putative [Plasmodium
           falciparum 3D7]
 gi|23498929|emb|CAD51007.1| mismatch repair protein pms1 homologue, putative [Plasmodium
           falciparum 3D7]
          Length = 1330

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 94/489 (19%), Positives = 201/489 (41%), Gaps = 41/489 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI+ + E+ I+ I + ++I   S  +KEL+ENS+DA++S ++  +   G    ++ DNG
Sbjct: 1   MKIKNIGEESIHNICSSQVIFTLSSVVKELVENSIDADASEIKIKLVESGIKLIEVNDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+          RH TSKI D  D   +++T GFRGEAL S+  +S++ + ++  +N+ 
Sbjct: 61  VGIKKINFENICARHATSKIKDFNDIHSSLNTLGFRGEALNSLCMLSNVNITTKNEENDH 120

Query: 118 GAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
              +      ++    P+A   GT V   ++F  IP R     K+ + + + +  ++++ 
Sbjct: 121 AYLLKFDKLGRLYHEEPIARLRGTTVSCENIFHNIPIRKKDFIKNIKTQVSDLLLLMQQY 180

Query: 176 AIAYPKVSFTFSTI-----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           AI Y  + F    I      +    +   +   +  +    + G+  I N +E N   NE
Sbjct: 181 AIIYHNIKFVIYNIVTSKGCTKNMNLLITNGTDSIKKNFYSIYGKRNIGNLIEFNIDGNE 240

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             ++GY       R + +  + +IN R +     ++ +            YP+++  +  
Sbjct: 241 WNIRGYISDSNSGRRDKDLQFYYINSRPIHILKNVNKLINTIYREFNSRLYPIIICNILS 300

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS------------IQKAINKKGISTSSVLS 338
           D + +D+NV P K  + F     +   +  +            I   I+   +  +++L 
Sbjct: 301 DTKNIDINVTPDKREVFFTFEQEMCEHMKTALVKLFTPKTSNLIDTQIDDYFLKANNILP 360

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS------------------TND 380
            ++ S+   +         +  S + +Q+    ++   +                    +
Sbjct: 361 NQIKSNIKLETHEHDDNHHHHKSTSPSQKHKGNEKPNDNIIKMEPNYNNEVTHHAYVKKE 420

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN-YIISQTTDGLVIVDQHAAHERLI 439
           L+  DD  Y +  +  +++ + H +        H N +   +  + +          ++ 
Sbjct: 421 LIHKDDQIYVKQEEMKDQNNSYHIEKDNDIDAEHCNRHEFGEEKENIFTYHDDRQLFKIK 480

Query: 440 FEKMRQDFN 448
            EK+    N
Sbjct: 481 EEKIYNYPN 489



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 56/221 (25%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
            L I+DQHAA E+  FEK  + F    + SQ L++   + +   +  +I ++     + G 
Sbjct: 1065 LFIIDQHAADEKSNFEKYNKIFT---MKSQKLISKIHVQVSPAQVHIIQKYMSIFLQNGF 1121

Query: 486  KA-------------------ERFGPNA-------IAIREIPAILSKKNIPQLLRDIIDE 519
            +                    E             + +  +P    K         ++  
Sbjct: 1122 EVQILEEPIHKRRKTNNNNINEPIDDEEEMLMELNVYLLSLPVFNGKILEVVDFMSLLHH 1181

Query: 520  IIDSSTTY--------------------------TLQDRIENILATMACYGSIRSGRKMQ 553
            + +                                   ++  ILA+ AC  +I  G+ + 
Sbjct: 1182 LTEHPVASYNESEVSVKTTIDLNNKTDTWFNYNFPRPQKVWRILASKACRNAIMVGKALN 1241

Query: 554  SIEMNRLLREMEKNPNSSQCNHGRPTF-IKLKLSDIEKLFG 593
              EM ++ +++    N   C HGRPT    +   DI+  F 
Sbjct: 1242 IYEMIKIKKKLSFLKNPWNCPHGRPTIKYLINNVDIKNCFK 1282


>gi|167387678|ref|XP_001738256.1| DNA mismatch repair protein mlh1 [Entamoeba dispar SAW760]
 gi|165898545|gb|EDR25378.1| DNA mismatch repair protein mlh1, putative [Entamoeba dispar
           SAW760]
          Length = 684

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 101/355 (28%), Positives = 176/355 (49%), Gaps = 17/355 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI++L +  IN+I AGE+I+RP   +KELIENS+DA  S V   I  GG     +TD+G
Sbjct: 1   MKIKRLDQTTINKIGAGEVIQRPFNVVKELIENSIDAHCSSVIISIGKGGLESIVVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G++ E++ +   R+ TSK I  D     T+G+RGEAL  +  VS +T++SR   +  G 
Sbjct: 61  CGISLEDLKVLGGRYTTSKSIEGD-----TYGYRGEALSCMTYVSKVTIISRTATSEIGY 115

Query: 120 QIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++     + I +  P+A + GT V V +LF  +  + +  ++   E   I  +IR  AI 
Sbjct: 116 KVVFQNGQIIENPIPLACSVGTTVIVDNLFDKMLRKKSMKET--EEYKKIISIIRDYAIH 173

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITLQGY 236
              ++FT     ++  ++  +  N    + I+++   +  NN  + + +       +  Y
Sbjct: 174 KATIAFTLRKAGTSVCEIKTE-KNSTVLKNITKIFTTNISNNLQQYSYQCLEPPFQMICY 232

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
               TF +G  N+   F+N R V+   +   I   Y E +P   Y  V L + ++  ++D
Sbjct: 233 LSNSTF-QGKKNKMIFFVNDRYVEHIGLKKVIERIYDEYLPKVNY-FVYLSINVNKERID 290

Query: 297 VNVHPAKSYIRFRNPTIIRNFI---IQSIQKAINKKGISTSSVLSKKMISSFHQD 348
            NV+P+K+ +R      + N I   + SI    ++      S +  + I +  Q+
Sbjct: 291 CNVNPSKTAVRLLEEEKLINQIDKFLNSIIIEFSQTRSFPPSQIKTQPIPNIQQE 345


>gi|67540292|ref|XP_663920.1| hypothetical protein AN6316.2 [Aspergillus nidulans FGSC A4]
 gi|40739510|gb|EAA58700.1| hypothetical protein AN6316.2 [Aspergillus nidulans FGSC A4]
 gi|259479468|tpe|CBF69717.1| TPA: ATP-binding protein (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1228

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 93/408 (22%), Positives = 156/408 (38%), Gaps = 25/408 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +G++I   +  IKEL+ENSLDA ++ +E      G    ++ DNG G+  E       +H
Sbjct: 12  SGQVIVDLTSVIKELVENSLDAGATSIEVRFRNSGLDLIEVQDNGSGIAPENYENVALKH 71

Query: 76  CTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISGE-KISSV 131
            TSK+S  DD  ++ TFGFRGEAL S+ A+S   + +          ++      K+   
Sbjct: 72  YTSKLSSYDDLLHLQTFGFRGEALSSLCALSDFRITTAQANQAPRATRLEFEQSGKLRKT 131

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
             VA   GT+  V  LF  +P R     K+ + E   + +++   A     V FT    +
Sbjct: 132 EVVAGQKGTVASVESLFRKLPVRRRELEKNIKREYGKVLNLLHAYACISTGVRFTIKNTQ 191

Query: 191 -SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----------------ITL 233
                 +   + N    E I+ V G   +   + L+ +                   I +
Sbjct: 192 AKKTVVVFATNGNPTTKENIANVYGAKTLLALIPLDLELQFEPSVAETMMAGDKKSNIQV 251

Query: 234 QGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           +G+   P F   R   ++  +F+N R      I   I   Y     L + P V     +D
Sbjct: 252 RGHISRPVFGEGRQTPDRQMLFVNSRPCALPQITKAINEVYKSF-NLAQSPFVFADFHMD 310

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
               DVNV P K  I   +   +   + QS+QK       +         +    Q + P
Sbjct: 311 TNAYDVNVSPDKRTILLHDAGALIESLKQSLQKLFESADQTVPQSQILGKLPLARQRSLP 370

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
           +T     A     +        ++ +  D +          + P +E+
Sbjct: 371 ETTRSDRAMEQEASDRDEREGGSQPNPQDRMKGLLGNIRTRDTPPDET 418



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 117/332 (35%), Gaps = 39/332 (11%)

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
               E  P + D+N    K         +I      +   +I++       V  +   S+
Sbjct: 636 HTQTEPQPAKEDMNAEEKKRREDAEVQRLIEEAGKANQANSISRANKLHKGVSYRD--ST 693

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
            H   A    L +  +      +    +    S ++L  S     + +           +
Sbjct: 694 VHLATAINASLSRIESQAKYIHDSHSRRNLSSSEDELDESRLSQVAPEERLTLTVNKDDF 753

Query: 405 QLGIACAQIHQNYIISQ------------------TTDGLVIVDQHAAHERLIFEKMRQD 446
                  Q +  +I++                     D L I+DQHA+ E++ FE+++  
Sbjct: 754 ARMRIHGQFNLGFILASRTTSTSHRAESDPASGLGFKDELFIIDQHASDEKINFERLQST 813

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-------RFGPNAIAIRE 499
                + +Q L+ P+ +DL   E  +++E+   L + G   +         G     +  
Sbjct: 814 TT---VQNQRLVHPKRLDLTAVEEEIVIENQVILEKNGFVVDVDDSGDKPIGQRCSLL-S 869

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYT--------LQDRIENILATMACYGSIRSGRK 551
           +P         + L ++I  + ++ST  T           ++  + A  AC  SI  G+ 
Sbjct: 870 LPLSKEVVFDVRDLEELIAILTETSTPNTTGPEIDIPRPSKVRKMFAMRACRSSIMIGKT 929

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +   +M R++R+M        C HGRPT   L
Sbjct: 930 LTQRQMERVVRDMGTIDKPWNCPHGRPTMRHL 961


>gi|225848263|ref|YP_002728426.1| DNA mismatch repair protein MutL [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643743|gb|ACN98793.1| DNA mismatch repair protein MutL [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 157

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 75/154 (48%), Positives = 103/154 (66%), Gaps = 2/154 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKIR L ++++N+IAAGE++ERPS  +KELIENSLD  +S +E  I   GK    + DNG
Sbjct: 1   MKIRPLPDEVVNKIAAGEVVERPSSVLKELIENSLDTSASLIEVSIEKAGKRLISVFDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++  AV+RH TSKI   +D  +I T+GFRGEAL SI +VS LT+ SR   +  G
Sbjct: 61  EGIEKQDLINAVKRHYTSKIKALEDLYSIITYGFRGEALSSISSVSRLTITSRTKNDLHG 120

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIP 152
           +Q+++ G KI S   V    GT VEV+DLFF + 
Sbjct: 121 SQLSLEGGKILSFSEVGCPVGTKVEVKDLFFNVE 154


>gi|213019734|ref|ZP_03335539.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994775|gb|EEB55418.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 173

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/168 (47%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG++   +TDNG
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSSEIEIKIESGGRNLITVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G+  E++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+        
Sbjct: 61  NGIEKEDLELAFMRHATSKLSDGELIEIRHLGFRGEALPSIAAVSRMKLSSKASGAKEAW 120

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
            I    GEK+  + P ++  GT +EVRDLFF  P RL FLK+E+ E  
Sbjct: 121 SIRYEGGEKVREITPCSLLQGTYIEVRDLFFATPNRLKFLKTERAEHK 168


>gi|118151052|ref|NP_001071449.1| PMS1 protein homolog 1 [Bos taurus]
 gi|117306701|gb|AAI26840.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Bos
           taurus]
          Length = 932

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/452 (23%), Positives = 187/452 (41%), Gaps = 34/452 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++LS   +  +++ ++I      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLSAATVRLLSSSQVITSVVSVVKELIENSLDARATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ +++ ++   +N   Q 
Sbjct: 62  KAIDAPVMAVKYYTSKISSHEDLENLTTYGFRGEALGSICCIAEVSITTKTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  G  I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGGGHIISQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P V   F   K+  ++   ++   +    +  V+G   + N    + + + ++I L G
Sbjct: 182 LKPDVRIVFIHNKAIIWQ---KTRVSDHKMALMSVLGTAVMGNMESFQYHCEESQIFLSG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKHDADHSCTSLSTPERSFIFINSRPVHQKDILKLIRHYYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH- 346
           +++    VDVN+ P KS +  +N   +   +   +         + S   +K  +SS   
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTRYGSLPSTNSYESNKTDVSSADM 358

Query: 347 -------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                        +      + P   TS    Q  +    +  +TN  L          +
Sbjct: 359 VVSKTTETDVLLTKMETSGNNYPNVDTSAIPFQNDVRNDTSGENTNYCLNHQVHIGDHYD 418

Query: 394 DPV-EESEATHYQLGIACAQIHQNYIISQTTD 424
           D    E+ +     G A  +I +N    + T 
Sbjct: 419 DYFNSENSSIDKNDGNAFKEIPENKSSCEDTQ 450



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 31/302 (10%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R    I+  I Q  Q ++              +    H+     ++ PK         EK
Sbjct: 630 RYNKQIKRAIEQESQVSLKDGKKRMKPTSVWNLAQK-HKLKTSPSNQPKLDELFQAQIEK 688

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +     +  E   + L         +  +  +   +++
Sbjct: 689 KKNQNIKIVQIPFSMENLKKNFDTQKKFDLEEKDEFCLIHNLK--FPDAWLITSKTEIML 746

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 747 LNSYRVEEALLFKRLLENHKLPAEPLEKPIILTESLFNGSHYLEILHKMTADDQRYSGSI 806

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N++ I  +   L    +  L ++I++ I++ +    
Sbjct: 807 YLSDPRLTANGFKIKLIPGVSISENSLEIEGMANCLPFYGVMDL-KEILNAILNKNAKEV 865

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREM---EKNPNSSQCNHGRPTFIK 582
            + R   +++ +   A   S +    +   +M  ++  M    +N   +QC HGRP F  
Sbjct: 866 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDMQDIIYRMKHQFRNE-ITQCVHGRPFFHH 924

Query: 583 LK 584
           L 
Sbjct: 925 LT 926


>gi|225349704|gb|ACN87777.1| MutL [Lactobacillus casei]
 gi|225349706|gb|ACN87778.1| MutL [Lactobacillus casei]
 gi|225349708|gb|ACN87779.1| MutL [Lactobacillus casei]
 gi|225349714|gb|ACN87782.1| MutL [Lactobacillus casei]
 gi|225349716|gb|ACN87783.1| MutL [Lactobacillus casei]
 gi|225349718|gb|ACN87784.1| MutL [Lactobacillus casei]
 gi|225349720|gb|ACN87785.1| MutL [Lactobacillus casei]
          Length = 237

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 135/240 (56%), Gaps = 6/240 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236


>gi|311272789|ref|XP_003133587.1| PREDICTED: LOW QUALITY PROTEIN: PMS1 protein homolog 1-like [Sus
           scrofa]
          Length = 923

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 159/357 (44%), Gaps = 19/357 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAVKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   + D++    +
Sbjct: 122 VLDGSGHIISQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P+V   F   K+  ++   ++   +    +  V+G   + N    + + + ++I L G
Sbjct: 182 LKPEVRLVFIHNKAIIWQ---KTRVSDHKMALMSVLGTAVMGNMEAFQYHSEESQIYLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKHNADHSVTSLSTPERSFIFINSRPVHQKDILKLIRHYYNLKCLKETTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           +++    VDVN+ P KS +  +N   +   +   +         + S    K  +SS
Sbjct: 299 IDVPTVDVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGSLPSTNSYESDKTDVSS 355


>gi|296490755|gb|DAA32868.1| postmeiotic segregation 1 [Bos taurus]
          Length = 932

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 104/452 (23%), Positives = 187/452 (41%), Gaps = 34/452 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++LS   +  +++ ++I      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLSAATVRLLSSSQVITSVVSVVKELIENSLDARATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ +++ ++   +N   Q 
Sbjct: 62  KAIDAPVMAVKYYTSKISSHEDLENLTTYGFRGEALGSICCIAEVSITTKTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  G  I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGGGHIISQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P V   F   K+  ++   ++   +    +  V+G   + N    + + + ++I L G
Sbjct: 182 LKPDVRIVFIHNKAIIWQ---KTRVSDHKMALMSVLGTTVMGNMESFQYHCEESQIFLSG 238

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R V  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKHDADHSCTSLSTPERSFIFINSRPVHQKDILKLIRHYYNLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH- 346
           +++    VDVN+ P KS +  +N   +   +   +         + S   +K  +SS   
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTRYGSLPSTNSYESNKTDVSSADM 358

Query: 347 -------------QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                        +      + P   TS    Q  +    +  +TN  L          +
Sbjct: 359 VVSKTTETDVLLTKMETSGNNYPNVDTSAIPFQNDVRNDTSGENTNYCLNHQVHIGDHYD 418

Query: 394 DPV-EESEATHYQLGIACAQIHQNYIISQTTD 424
           D    E+ +     G A  +I +N    + T 
Sbjct: 419 DYFNSENSSIDKNDGNAFKEIPENKSSCEDTQ 450



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 31/302 (10%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R    I+  I Q  Q ++              +    H+     ++ PK         EK
Sbjct: 630 RYNKQIKRAIEQESQVSLKDGKKRMKPTSVWNLAQK-HKLKTSPSNQPKLDELFQAQIEK 688

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +     +  E   + L         +  +  +   +++
Sbjct: 689 KKNQNIKIVQIPFSMENLKKNFDTQKKFDLEEKDEFCLIHNLK--FPDAWLITSKTEIML 746

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 747 LNSYRVEEALLFKRLLENHKLPAEPLEKPIILTESLFNGSHYLEILHKMTADDQRYSGSI 806

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N++ I  +   L    +  L ++I++ I++ +    
Sbjct: 807 YLSDPRLTANGFKIKLIPGVSISENSLEIEGMANCLPFYGVMDL-KEILNAILNKNAKEV 865

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREM---EKNPNSSQCNHGRPTFIK 582
            + R   +++ +   A   S +    +   +M  ++  M    +N   +QC HGRP F  
Sbjct: 866 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDMQDIIYRMKHQFRNE-ITQCVHGRPFFHH 924

Query: 583 LK 584
           L 
Sbjct: 925 LT 926


>gi|225349724|gb|ACN87787.1| MutL [Lactobacillus casei]
          Length = 237

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 136/240 (56%), Gaps = 6/240 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V++  +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDVKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236


>gi|156538821|ref|XP_001607972.1| PREDICTED: similar to SI:dZ72B14.2 (novel protein similar to human
           postmeiotic segregation increased 1-like protein
           (PMSL1)) [Nasonia vitripennis]
          Length = 1054

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 17/332 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS++ +  I +G++I     AIKEL+ENSLDA++  +E  +   G S  ++ DNG
Sbjct: 203 MSIKPLSKETVKLINSGQVISSIYSAIKELVENSLDAQAQNIEVNLVDDGLSLIEVKDNG 262

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ ++         TSKISD  D   + T+GFRGE L S+  V+ +T+ ++  ++ T 
Sbjct: 263 CGISRDDAQYMALHAHTSKISDFNDLDLLSTYGFRGEGLTSVCQVADVTISTKTEEDVTM 322

Query: 119 AQIA-ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN---FLKSEQVETNLITDVIRR 174
            +       ++          GT V++R+LF  +P R N     K    E   I  +++ 
Sbjct: 323 LRYTLNHDGQVVDSELSHGLTGTTVQMRNLFKNMPVRRNILTNKKRMNQELKAIELLLKM 382

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
            +I  P V F         +    + +     E +  V G         + +   +  +Q
Sbjct: 383 FSICKPSVRFMLRVNGKTVFT---KISCKTVMEAVRSVYGSQIFPKLTHITKSFGQTEMQ 439

Query: 235 GYTG----IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG----RYPVVVL 286
            +                  +V +NGR ++ K I   I    +E         R  V  L
Sbjct: 440 LFIPDKNVKDASEVSQVGLQFVCVNGRPIKSKEIEKKINKRISEYFNQNTSSSRKFVFCL 499

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           +L++DP  +DVN+ P K  I  +N T + + I
Sbjct: 500 ILKVDPSMLDVNLEPNKDKIYLQNETAVLSEI 531


>gi|67471818|ref|XP_651821.1| DNA mismatch repair protein MLH1 [Entamoeba histolytica HM-1:IMSS]
 gi|56468601|gb|EAL46434.1| DNA mismatch repair protein MLH1, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 702

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 173/355 (48%), Gaps = 17/355 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           MKI++L +  IN+I AGE+I+RP   +KELIENS+DA  S +   I  GG     +TD+G
Sbjct: 1   MKIKRLDQTTINKIGAGEVIQRPFNVVKELIENSIDAHCSSIIISIGKGGLESIVVTDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
            G++ E++ +   R+ TSK I  D     T+G+RGEAL  +  V  +T++SR   +  G 
Sbjct: 61  CGISLEDLKVLGGRYTTSKSIEGD-----TYGYRGEALSCMTYVGKVTIISRTATSEIGY 115

Query: 120 QIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++     +I  +  P+A + GT V V +LF  +  + +  ++   E   I  +I   AI 
Sbjct: 116 KVVFQNGQITENPIPLACSIGTTVIVNNLFDKMLRKKSMKET--EEYKKIISIIGDYAIH 173

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITLQGY 236
              ++FT     ++  ++  +  +    + IS++   +  NN  + + +       +  Y
Sbjct: 174 KATIAFTLRKAGTSVCEIKTE-KHSTILKNISKIFTTNISNNLQQYSYQCLEPPFQMICY 232

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                F +G  N+   F+N R ++   +   I   Y E +P   Y  V L + ++  ++D
Sbjct: 233 LSNSIF-QGKKNKMIFFVNDRFIEHIGLKKVIERIYDEYLPKVNY-FVYLSINVNKERID 290

Query: 297 VNVHPAKSYIRFRNPTIIRNFI---IQSIQKAINKKGISTSSVLSKKMISSFHQD 348
            NV+P+K+ IR      + N I   + SI    ++      S +  + + +  Q+
Sbjct: 291 CNVNPSKTAIRLLEEEKLINQIDKFLNSIIIEFSQTRSFPPSQIKTQPMPNIQQE 345


>gi|260948620|ref|XP_002618607.1| hypothetical protein CLUG_02066 [Clavispora lusitaniae ATCC 42720]
 gi|238848479|gb|EEQ37943.1| hypothetical protein CLUG_02066 [Clavispora lusitaniae ATCC 42720]
          Length = 610

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 112/613 (18%), Positives = 218/613 (35%), Gaps = 71/613 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IRKL  K    + +  +++     +++L++NSLDA++S V   I     S   + DNG
Sbjct: 27  MPIRKLRGKTRQTLRSQVVVDSVETVLRQLVQNSLDAQASFVRVKIDLASLSVC-VEDNG 85

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGA 119
            G+ + ++ +  +R+ TS            G RGE+L SI   S  + + S+        
Sbjct: 86  HGIEASDLSLVGKRYHTSS-----------GGRGESLSSIAVCSGSVIVRSKTQAQQENC 134

Query: 120 QIAISGE--------KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
                                      GT V V  +F ++P RL   + +  +       
Sbjct: 135 VCLGGSCPPELLRVLTSFFQLDSLEAAGTQVMVSRVFASMPVRLENARRKADKLRQKMKS 194

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +    +  P V      ++   +   F     +        +      N V L  KS   
Sbjct: 195 VFFELLCAPHVKAEVYLLEQGEFVRMFSVEACDSVVEKFSSLFRLSAKNMVSLLAKSTSC 254

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           +++G       +   +   +VF+NG  V  +  ++ I  ++   +  GR  V    L + 
Sbjct: 255 SVEG--SFCLQSSHRSGLQFVFLNGEHVPLQSQVNRIFASHGYGL--GRQSVFGRSLRLH 310

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           P             ++ ++      F+ + + K + K           +   +  Q  +P
Sbjct: 311 PVYCFH--------VQAQDEANALRFLKEELAKVLAKV-----LAQGGQKRYNEGQRGSP 357

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
           K         + +TQE            +  PS D +    + P+               
Sbjct: 358 KRIRKSTREEIDSTQE------------ETQPSVDFSQPSVDFPLVHVSQQDIGTLKVVK 405

Query: 412 QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT-----SQTLLTPEIIDLL 466
           Q+ + +I++++   L I+DQHA  ER+  E+  +++ +                    L 
Sbjct: 406 QVSKQFILAKSGSSLFILDQHACDERVQVEQFFREYITAMSDPSCDLRIRCDETMAFSLA 465

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILS-KKNIPQLLRDIIDEIIDSST 525
           + E    + +++     GI     G     +  +P  LS +    +L   ++  I++   
Sbjct: 466 KEEQTSFLRYEDVFRNFGISY-VLGNRKCTVTHLPRALSHETQPERLKLLLLQHIMEMEE 524

Query: 526 TYT--------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
                            +   I   L + AC  S++ G  +   EM  L+ +++K     
Sbjct: 525 GEKQATMTGNWVQDVSNIPSAISESLISSACRQSVKFGDLLSKAEMEYLISQLDKCTLPF 584

Query: 572 QCNHGRPTFIKLK 584
           QC HGRPT + L+
Sbjct: 585 QCAHGRPTIVPLE 597


>gi|242008846|ref|XP_002425208.1| DNA mismatch repair protein pms2, putative [Pediculus humanus
           corporis]
 gi|212508929|gb|EEB12470.1| DNA mismatch repair protein pms2, putative [Pediculus humanus
           corporis]
          Length = 712

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 106/530 (20%), Positives = 209/530 (39%), Gaps = 55/530 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR + +  INQI +G+++   + A+KEL+ENSLDA ++ ++  +   G    ++ DNG G
Sbjct: 5   IRPIDKTTINQICSGQVVLTLATAVKELLENSLDAGATSIQIKLEEYGSKVIEVIDNGCG 64

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +       +H TSKIS+  D  N+ TFGFRGEAL S+  +S +T+ ++      GA 
Sbjct: 65  VNEDNFQALTLKHHTSKISEFSDIYNVKTFGFRGEALSSLCTLSSVTITTQHINAQIGAV 124

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
           +       I S   +    GT V + +LF T+P R     K+ + E + +  V+    + 
Sbjct: 125 LKFDHNGIIKSNTKIHRKVGTTVRLENLFCTLPIRRTEFLKNLKKEFSKMCTVLYAYGLI 184

Query: 179 YPKVSFTFST-----------IKSNRYKMNFQSTNGN-----FPERISQVIGEDFINNAV 222
              V  T +               +  K NF +T  +         I+ + G     N +
Sbjct: 185 STGVRITCTNHVVTKSKFQNKNDQDNLKKNFTTTIMDIEGKSIEFNINSIFGIKEKQNLL 244

Query: 223 ELNEKSNE------------------ITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDK 262
           +  +K+                      ++GY    +   G   +N+ + +IN R +   
Sbjct: 245 KFVQKNPSLETLKEFNIESKKFNSELYKIEGYISSCSHGCGKSGSNRQFYYINQRPIDHP 304

Query: 263 FILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI 322
            I   +   Y +       P V+L ++++    D+N+ P K  +  +N      F++ ++
Sbjct: 305 KIFKLVNETYHQFNS-HEDPFVILHIKVEDGLFDINLVPDKRQVLVQNEN----FLLATL 359

Query: 323 QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA-TSLTNTQEKLFLQENRLSTNDL 381
           ++++        S L    I   +          K   T L N +EK  L+++     +L
Sbjct: 360 KESLLDMFKLIPSTLKVNNIGLLNIKFENDKSSDKVNCTQLENEKEKFNLKKSEDLKMNL 419

Query: 382 LPSD-------DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
                      +   S  ++ +  ++ ++  +          ++  +  D LV       
Sbjct: 420 KRFQYSSQNLNNTNNSNMSESIPSNKISNNFISNTSCSSKDMFVQKKLKDFLVSDSADND 479

Query: 435 HE-RLIFEKMRQDFNSTKITSQTLLTPEIIDLL-EGECALIMEHDEDLHR 482
            +   + E ++ +   +   S+ LL P       +       ++   L  
Sbjct: 480 QQLNDVTENLKTEMTKSPPKSKQLLFPTQNFSNYKITIENSNDNKRKLEE 529



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
             +++   EN       + S+   +   ++ +EE E  +  L I   +  +         
Sbjct: 545 EPKRIKYDENITGHVAEIKSETLEFENISNNLEEQEEKNGGLDINTEKYDEGLDNKFRRS 604

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            + I+DQHA+ E+  FE ++     T +  Q ++ PE ++L   +  L++EH+E   + G
Sbjct: 605 DIFIIDQHASDEKYNFEMLKL---KTVMQCQKMVNPETLNLTVDKEELMLEHEEIFKKNG 661

Query: 485 IKAERFGPNA-----IAIREIPA----ILSKKNI 509
                F         I +  +P     +  K ++
Sbjct: 662 FHF-IFDETQVPTKRIKLTSVPMSKSIVFGKNDV 694


>gi|207341702|gb|EDZ69686.1| YNL082Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 417

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 173/422 (40%), Gaps = 39/422 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 1   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 61  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 121 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 180

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 181 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 240

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 241 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 301 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 355

Query: 330 GISTSSVLSKKMISSFHQDNAPK---THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
                  L K+M S   Q    +         +T+  +  E      +  + ++    + 
Sbjct: 356 YNRQELALPKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENYHTARSESNQSNHAHFNS 415

Query: 387 PT 388
            T
Sbjct: 416 TT 417


>gi|296412633|ref|XP_002836027.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629827|emb|CAZ80184.1| unnamed protein product [Tuber melanosporum]
          Length = 1023

 Score =  233 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 93/408 (22%), Positives = 170/408 (41%), Gaps = 29/408 (7%)

Query: 2   KIRKLSEKIINQIAAGEII-ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
            IR +  + ++QI +G++I E  +  +KEL+EN LDA ++ +E      G    ++ DNG
Sbjct: 3   TIRPIEGRSVHQIQSGQVISEGLTSVVKELVENGLDAHATSIEVRFKSNGLDAIEVIDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNT 117
            G++ E       +H TSK++   D  ++ TFGFRGEAL S+ A+S L +++    +   
Sbjct: 63  DGISPENYESIALKHWTSKLTSYADLDSVTTFGFRGEALSSLCALSDLQIVTATASEAPK 122

Query: 118 GAQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
           G ++      K+ S    A   GT V V ++F T+P R     ++ + E   +  +++  
Sbjct: 123 GTKLEFEMSGKLKSRSVTAAQKGTAVLVENIFKTLPVRRKELERNIKREYTKVLGILQAY 182

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKS----- 228
           A     V F+     +   +    +T GN    E +S V G   ++  V +N +      
Sbjct: 183 AGVCVGVKFSVFNQPAKGRRTPVFATKGNPTVRENVSNVFGAKALSALVPMNLEFEMKPT 242

Query: 229 ------------NEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILSTIRTAYAE 274
                         I + G+   P    G    ++   F+NGR      +   I   Y  
Sbjct: 243 RKGFQKAAKPSEKMIKIVGFISRPVVGEGRLAPDRQMFFVNGRPCMLPQVARAINEVYKH 302

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
              + + P +   +++D    DVNV P K  I   +   +   +  S+    +    +  
Sbjct: 303 F-NVTQSPFIFADIQLDTNAYDVNVSPDKRTILLHDQAEMMESLKVSLTDLFDNHEQTVP 361

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
           + +++    +  Q    KT   K A ++    E    +E+  S     
Sbjct: 362 NSVTQSKTQNLKQMTLDKTPA-KPAQAMQQVMEDDSAEEDDASYYAPP 408



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 10/190 (5%)

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
              +       Q ++ +I++   D L I+DQHA+ E+  FEK++Q      + +Q L  P
Sbjct: 800 KQDFFEMQIKGQFNKGFILATRADDLFIIDQHASDEKYNFEKLQQVTI---VQNQRLAVP 856

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRD 515
           + +DL+  +  ++++H +   + G   E       G     I  +P           L +
Sbjct: 857 KKLDLMAVDEIVVIDHIDTFKKNGFVIEVDTGAPVGEKCKLI-SLPISKETVFGLDDLEE 915

Query: 516 IIDEIIDS-STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +I  I +    +     ++  + A  AC  S+  G+ +    M +L++ M +      C 
Sbjct: 916 LIHLISEDPGNSAVRCSKVRKMFAMRACRKSVMVGKALTEKGMEKLVKHMGELDKPWNCP 975

Query: 575 HGRPTFIKLK 584
           HGRPT   L 
Sbjct: 976 HGRPTMRHLS 985


>gi|225349710|gb|ACN87780.1| MutL [Lactobacillus casei]
 gi|225349712|gb|ACN87781.1| MutL [Lactobacillus casei]
          Length = 237

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 135/240 (56%), Gaps = 6/240 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASHNYLSLVVNGRYIKNFQLTK 236


>gi|225349722|gb|ACN87786.1| MutL [Lactobacillus casei]
          Length = 237

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 135/240 (56%), Gaps = 6/240 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTTAT-DSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPDTTRASRNYSSLVVNGRYIKNFQLTK 236


>gi|158286232|ref|XP_308635.4| AGAP007126-PA [Anopheles gambiae str. PEST]
 gi|157020370|gb|EAA04111.4| AGAP007126-PA [Anopheles gambiae str. PEST]
          Length = 882

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 161/364 (44%), Gaps = 39/364 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  + ++ +++I +G+++   +IA+KEL+ENSLDA ++ +E  + G G    +++DNG 
Sbjct: 19  KINAIDKETVHRICSGQVVLNLAIAVKELVENSLDAGATLIEVKLRGCGAELVEVSDNGS 78

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +       ++ TSK+ +  D  +I TFGFRGEAL S+ A+S + + +R        
Sbjct: 79  GVEEKNFAGLTAKYHTSKLKEFTDLESIETFGFRGEALSSLCALSDMIITTRHSTAPHAT 138

Query: 120 QIA-ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMAI 177
           ++      +I +  P A   GT V + +LF T+P R   F ++ + E   +  +++   +
Sbjct: 139 KLTLNHEGRIQTRAPCAHPVGTTVSLTNLFATLPVRKKEFQRNIKREFQRMCQILQAYCL 198

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFP--ERISQVIGEDFINNAVELNEKS------- 228
               V    +   +   K    ST G+    + ++ + G       ++L           
Sbjct: 199 VSVGVRIICTNHTAKGGKSVIMSTQGSSRVLDNVTALFGTKQTAELMQLVPCIGGNGKIQ 258

Query: 229 -----------------------NEITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKF 263
                                  +   ++GY         R   ++ + FIN R  + K 
Sbjct: 259 DLEASDFDDSMALTQEEVDNFNLSRYKIEGYISSCAHGSGRSTKDRQFYFINSRPCEPKQ 318

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
           I   I  AY     + + P V L L +D  +VDVN+ P K  +   N  I+   I +SI+
Sbjct: 319 ISKLINDAYHRY-NVHQQPFVFLNLMLDRSEVDVNLTPDKRQVLVNNEKILMLAIRKSIK 377

Query: 324 KAIN 327
           K   
Sbjct: 378 KTFQ 381



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 118/304 (38%), Gaps = 21/304 (6%)

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           +    K+     +   +   +     K       S  S+L    +S          H  +
Sbjct: 555 DEDSMKANAGTSSQESVTELVSFLSCKTETSDSSSPQSILLDDELSDEEGQADDMRHRNQ 614

Query: 358 YATSLT-NTQEKLFLQENRLSTNDLLPSDDPTY-------------SEDNDPVEESEATH 403
              S++ +  E+L  +E  L +      +  T              + +N+   E     
Sbjct: 615 QQLSVSWDLLEQLIKREQTLQSARTADQNSLTRLRFKSKINPTSNKAAENELQTEITKDD 674

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           +       Q +  +II +  D L IVDQHA  E+  FE +++    T + +Q L+ P+ +
Sbjct: 675 FAKMEIVGQFNLGFIIVRLGDDLFIVDQHATDEKYNFEDLQRT---TVLQNQRLVVPQPL 731

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIPAILSKKNIPQLLRDIIDE 519
           +L      +++++ +     G K E  G       + +   P   + +   + + ++I  
Sbjct: 732 ELTAVNEMVLIDNLDVFEMNGFKFEVDGAAPTTKKVRLMAKPYSRNWEFGKEDIDELIFM 791

Query: 520 IIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           + D+ +T     R+  + A+ AC  S+  GR +   EM RL+R M +      C HGRPT
Sbjct: 792 MQDAPSTVCRPSRVRAMFASRACRKSVMIGRALSVREMERLIRHMGEIDQPWNCPHGRPT 851

Query: 580 FIKL 583
              L
Sbjct: 852 MRHL 855


>gi|156355115|ref|XP_001623519.1| predicted protein [Nematostella vectensis]
 gi|156210229|gb|EDO31419.1| predicted protein [Nematostella vectensis]
          Length = 786

 Score =  233 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 97/445 (21%), Positives = 180/445 (40%), Gaps = 39/445 (8%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
            +  K ++QI +G+++   + A+KEL+ENSLDA ++ V+  +   G    +++DNG G+ 
Sbjct: 18  PIDRKSVHQICSGQVVLSLATAMKELLENSLDAGATSVDVRLKEHGSHSIEVSDNGAGVE 77

Query: 65  SEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-I 121
            +       +H TSK+ D  D S + TFG+RGEAL S+ A+S L++ +R      G +  
Sbjct: 78  PQNFEALTLKHYTSKLKDFSDLSAVETFGYRGEALSSLCALSDLSITTRHISQTAGTKLD 137

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYP 180
                K+ S  P A   GT+V V +LF T+P R   FL++ + E   +  V++   +   
Sbjct: 138 YDHNGKLKSKLPCAREQGTMVTVLNLFSTLPVRHKEFLRNIKKEFVKLVHVLQGYCLISA 197

Query: 181 KVSFTFS-TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE------------- 226
               T S  +   R  +     +    + I+ V G   + + +   +             
Sbjct: 198 GTRITCSNHVAGKRSTVVSTHGSLQIKDNITAVFGPKQVQSLLPFKQLQPSEEDCTELNL 257

Query: 227 ------KSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
                 +SN  T+ G+         R ++++ + FIN R      +   +   Y      
Sbjct: 258 SVVSNSESNPFTITGFISKADHGSGRSSSDRQFFFINKRPCDLPKVSRVVSEVYHMY-NR 316

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK---------- 328
            ++P V+L + +    VDVNV P K  +  +   ++   +  S+ K  +           
Sbjct: 317 HQFPFVMLDISLKRDAVDVNVTPDKRQVFLQQEKLLLATLRTSLIKMFDPGTSTYEVNQK 376

Query: 329 --KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
               I  S   ++    S    + P  +    ATS+   ++    Q+N L++        
Sbjct: 377 VFTQIKLSPSPTQASHFSLAPGDNPSGNNAYAATSVGKYEKSCVRQKNFLNSLSNFKRKF 436

Query: 387 PTYSEDNDPVEESEATHYQLGIACA 411
              S   +  +              
Sbjct: 437 SELSPCGEKKQNEPVAKQARLTEIF 461



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 92/226 (40%), Gaps = 7/226 (3%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           S +++      Q   +       S +   + + +  +  E   +       Q +  +I++
Sbjct: 552 SRSHSLNTSITQNAEVRIFRAKISPENNSAAEEELTKNIEKGSFARMEIVGQFNLGFILA 611

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           +  + L I+DQHA+ E+  FE       +T + +Q L+ P  ++L     ++++++ E  
Sbjct: 612 KLDNDLFIIDQHASDEKYNFE---MQQRNTVLRNQRLIIPRKLELTAVNESILLDNLEIF 668

Query: 481 HRLGIKAERFGP----NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            + G + +          + +  +P   +     + + ++I  + D+        R+  +
Sbjct: 669 RKNGFEFQIDDDAPATQKVKLVSVPTSKNWTFGVEDVEELIFMLSDAPGILCRPTRVRKM 728

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            A+ AC  SI  G  +    M  ++  M +  +   C HGRPT   
Sbjct: 729 FASRACRMSIMVGTALSHAHMQGIVGHMGQMEHPWNCPHGRPTMRH 774


>gi|71064118|gb|AAZ22526.1| Pms1p [Saccharomyces cerevisiae]
          Length = 877

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 174/445 (39%), Gaps = 37/445 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA +S++E +    G    + +DN
Sbjct: 1   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANASQIEIIFKDYGLESIECSDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++ +       
Sbjct: 61  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVTTTTSPPKA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 121 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 180

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 181 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 240

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 241 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 301 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 355

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +         S T+  +       R  +N    +   +
Sbjct: 356 YNRQELALPKRMCSQSEQQAQKRLKTEVVDDRSTTHESDNENYHSARSESNQSNHAHFNS 415

Query: 389 YSEDNDPVEESEATHYQLGIACAQI 413
             E    V +         +     
Sbjct: 416 TCEGTTGVIDKSNGTELTSVMDGNY 440



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 495 EFQNITSPDKARSLEKVVEEPVFFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 554

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 555 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 602

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 603 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 661

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 662 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 718

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 719 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 774

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 775 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACKSSIMIGKPLNKK 834

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 835 TMTRVVHNLSELDKPWNCPHGRPTMRHL 862


>gi|225349726|gb|ACN87788.1| MutL [Lactobacillus casei]
          Length = 237

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 77/240 (32%), Positives = 135/240 (56%), Gaps = 6/240 (2%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI--SDDFSN 86
           EL+ENS+DA++++++ +I+  G    +++DNG G+  +++  A  RH TSKI  + D  N
Sbjct: 1   ELVENSIDAQATQIDVLISAAGLQEIRVSDNGIGIAPDDVATAFLRHATSKILTTRDLFN 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +H+ GFRGEAL SI AV+ + L +    +  G QI + G ++ +    A   GT VEV D
Sbjct: 61  VHSLGFRGEALASIAAVADVKLTT-AMDSGIGTQIHVKGGEVEAQSTAAHRRGTDVEVND 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           LFF  PARL ++KS+Q E   I D++ R+A+A P ++FT S   +   +    +  G+  
Sbjct: 120 LFFNTPARLKYMKSQQTELGKIVDIVSRLAMANPDIAFTVSHDGNMVVR---TAGQGDLR 176

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           + ++ + G     + V+   +  +  + G T +P   R + N   + +NGR +++  +  
Sbjct: 177 QTLAGIYGLSVARSMVDFKAQDLDFRVSGLTSLPETTRASRNYLSLVVNGRYIKNFQLTK 236


>gi|255728985|ref|XP_002549418.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240133734|gb|EER33290.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 665

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 124/677 (18%), Positives = 232/677 (34%), Gaps = 105/677 (15%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I KL++ +++QI +  I+      + EL++NSLDA ++ +   +     S   I DNG 
Sbjct: 3   SIEKLNKSVVSQIRSHVILNSFEQVVGELLQNSLDAGANTISIRLDLESLS-IYIQDNGK 61

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSI-------------GAVS--HL 106
           G++ +++      + TSK      +I TFG++GEAL ++                S   L
Sbjct: 62  GISPDDLERVTLENYTSKFKSGHKHISTFGYKGEALNALSSISKVSIISKVESFNSPYKL 121

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
           T+              I+              GT+V   ++F  IP R   +++      
Sbjct: 122 TV---QQDRAVVQPYDINATTGYFQAEDLGPRGTVVTATNIFSNIPVRKQQIRNYPPARL 178

Query: 167 L--ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPER------ISQVIGEDFI 218
           +  +  VI    I  PKV      +   +++++   +  N          +  + G    
Sbjct: 179 IDGVKQVIFESLIRNPKVKLQVMMVNKAQFQLDEVLSFDNRCCTSSYTKLLHHLFGLKVK 238

Query: 219 NNAVELNEKSNEITLQGYTG-IPTFNRGNANQFYVFINGRTVQDK-----------FILS 266
              +    K  +I + G  G  P  +       Y F+NG+                    
Sbjct: 239 FEPICARFK--DIKVSGIIGTKPVNS---RKHQYFFVNGKPFPIPVDDLNKVNSLFTSFG 293

Query: 267 TIRTAYAETIPLGR--YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
                   T   G+  Y     L+++   +     H     I      II   + + I K
Sbjct: 294 FTEDVNCSTKTTGKPFYKYATFLIKVRCAEKRSVFHDT---IHSNTWCIIMQIVERVISK 350

Query: 325 AINKKGISTSSVLSKKMISSFHQDNAPKTH------------------------------ 354
            +   G  + + +     S F      K                                
Sbjct: 351 YLETLGFESGNRIKAHTPSPFASPTKKKADKFILDTNSKLGNLNEVEMAGLVGSNKCIQN 410

Query: 355 ---LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-EATHYQLGIAC 410
              LP     L    E    + N +S N L    + T+ E  +  +E  +  +Y++    
Sbjct: 411 VHRLPTAPKKLAVKNEA--KRPNVISKNCLCHEQEYTFEESLEFSKEHLQPGNYKIIKQL 468

Query: 411 AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS--TKITSQTLLTPEIIDLLEG 468
            +      + +    +V++DQHA  ER+  E+  Q+F     K     L  P    +   
Sbjct: 469 DKKFILVTLKEELMRIVVLDQHATDERIKVEEYLQEFVQSLQKNPGLRLKAPLTFSVASS 528

Query: 469 ECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAIL--SKKNIPQLLRD-IIDEIIDSST 525
           E AL  ++  + +  GI         + +  +P +L        + L+D ++    D + 
Sbjct: 529 EIALFEQYIANFNTFGISYGIEQKGQVIVTHLPLLLLNKISQDSEFLKDALLQHCYDLNE 588

Query: 526 ---------------TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
                          +Y L   I  ++ + AC  +I  G ++   +M RL+ ++      
Sbjct: 589 HVKRAHVNLHDWFECSYHLPRIIIELINSKACRSAIMFGDELNHDDMERLVGKLRHCKLP 648

Query: 571 SQCNHGRPTFIKLKLSD 587
            QC HGRP+ + L   +
Sbjct: 649 FQCAHGRPSIVPLARLE 665


>gi|126642159|ref|YP_001085143.1| methyl-directed mismatch repair enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388043|gb|ABO12541.1| methyl-directed mismatch repair enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 369

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 181/367 (49%), Gaps = 42/367 (11%)

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            AY   +   ++   +L LE+DP  +DVNVHP K  IRF N   +  F+    ++ + + 
Sbjct: 1   MAYDGILHGHQHSSYLLFLEVDPENIDVNVHPTKHEIRFLNQREVHEFVRHYAKETLAQF 60

Query: 330 GISTSS-------------------------VLSKKMISSFHQDNAPKTHLPKYA--TSL 362
             +++                           L +   ++    + P  + P     T  
Sbjct: 61  QTASADLAQAMKVDDIQNLSVQPQPKYQEQFTLHRTAQAADTAVDKPNGYQPSTELLTDF 120

Query: 363 TNTQEKLFLQENRLSTND--------------LLPSDDPTYSEDNDPVEESEATHYQLGI 408
            N++ +      +    +               L      +S D +    ++   + LGI
Sbjct: 121 NNSRPQAVHYAEQTPKYNGSAQLNNALKTYLAPLRDQPTNFSVDENIEPVAKVDEFPLGI 180

Query: 409 ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDLLE 467
           A AQ+H  YI++Q T+GL+IVD HAAHER++ ++M+  ++  +  TSQ LL P++I +  
Sbjct: 181 AIAQLHGIYILAQNTEGLIIVDMHAAHERILLQQMKNAWDKPEFWTSQQLLIPKVISISR 240

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +   + +    L RLG++ + +G   + +R +PAIL K +   L+ ++++++  +    
Sbjct: 241 MQAVRVEDLKPQLERLGLEIDLYGDEQVIVRGVPAILQKADFENLIPELLNDLDPNDEAQ 300

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            L  + + +LA MAC+G++R+ R++   EMN LLR+ME+   +SQCNHGRPT+    LS 
Sbjct: 301 GLLQKRDELLAGMACHGAVRAHRQLSLSEMNALLRQMEQTEFASQCNHGRPTWRAFPLSQ 360

Query: 588 IEKLFGR 594
           ++KLF R
Sbjct: 361 LDKLFAR 367


>gi|19880904|gb|AAM00551.1|AF458974_6 PMS1 [Saccharomyces cerevisiae]
          Length = 908

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 175/445 (39%), Gaps = 37/445 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA +S++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANASQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++ +       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVTTTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 271

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 272 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 331

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 332 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 386

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +         S T+  +      +R  +N    +   +
Sbjct: 387 YNRQELALPKRMCSQSEQQAQKRLKTEVVDDRSTTHESDNENYHSSRSESNQSNHAHFNS 446

Query: 389 YSEDNDPVEESEATHYQLGIACAQI 413
             E    V +         +     
Sbjct: 447 TCEGTTGVIDKSNGTELTSVMDGNY 471



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 526 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 585

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 586 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 633

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 634 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 692

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 693 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 749

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 750 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 805

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 806 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 865

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 866 TMTRVVHNLSELDKPWNCPHGRPTMRHL 893


>gi|86161600|gb|ABC86933.1| PMS1 [Saccharomyces cerevisiae]
 gi|259149279|emb|CAY82521.1| Pms1p [Saccharomyces cerevisiae EC1118]
          Length = 873

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 178/441 (40%), Gaps = 37/441 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 1   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 61  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 121 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 180

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 181 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 240

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 241 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 301 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 355

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +     +   S T+  +       R  +N    +   +
Sbjct: 356 YNRQELALPKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENYHTARSESNQSNHAHFNS 415

Query: 389 YSEDNDPVEESEATHYQLGIA 409
            +   D    +E T    G  
Sbjct: 416 TTGVIDKSNGTELTSVMDGNY 436



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 491 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 550

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 551 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 598

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 599 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 657

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 658 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 714

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 715 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 770

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 771 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 830

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 831 TMTRVVHNLSELDKPWNCPHGRPTMRHL 858


>gi|46562124|ref|NP_014317.2| Pms1p [Saccharomyces cerevisiae S288c]
 gi|110282983|sp|P14242|PMS1_YEAST RecName: Full=DNA mismatch repair protein PMS1; AltName:
           Full=Postmeiotic segregation protein 1
 gi|86161598|gb|ABC86932.1| PMS1 [Saccharomyces cerevisiae]
 gi|86161602|gb|ABC86934.1| PMS1 [Saccharomyces cerevisiae]
 gi|86161604|gb|ABC86935.1| PMS1 [Saccharomyces cerevisiae]
 gi|86161606|gb|ABC86936.1| PMS1 [Saccharomyces cerevisiae]
 gi|151944452|gb|EDN62730.1| postmeiotic segregation protein [Saccharomyces cerevisiae YJM789]
 gi|190409071|gb|EDV12336.1| DNA mismatch repair protein PMS1 [Saccharomyces cerevisiae RM11-1a]
 gi|285814569|tpg|DAA10463.1| TPA: Pms1p [Saccharomyces cerevisiae S288c]
          Length = 873

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 178/441 (40%), Gaps = 37/441 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 1   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 61  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 121 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 180

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 181 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 240

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 241 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 301 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 355

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +     +   S T+  +       R  +N    +   +
Sbjct: 356 YNRQELALPKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENYHTARSESNQSNHAHFNS 415

Query: 389 YSEDNDPVEESEATHYQLGIA 409
            +   D    +E T    G  
Sbjct: 416 TTGVIDKSNGTELTSVMDGNY 436



 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 491 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 550

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 551 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 598

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 599 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 657

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 658 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 714

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 715 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 770

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 771 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 830

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 831 TMTRVVHNLSELDKPWNCPHGRPTMRHL 858


>gi|291391906|ref|XP_002712385.1| PREDICTED: postmeiotic segregation 1 [Oryctolagus cuniculus]
          Length = 932

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 19/338 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGV 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D   + T+GFRGEAL SI  V+ +++ +R   +N   Q 
Sbjct: 62  KAVDAPVMAVKYYTSKINSHEDLERLTTYGFRGEALGSICCVAEVSITTRTAADNFSTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDSSGHIVSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQG 235
             P +   F   K+  ++   ++   +    +  V+G   + N    +   + ++++L G
Sbjct: 182 LKPDLRIVFVHNKAVVWQ---KTKVSDHKMALMSVLGTAVMGNMESFQCCSEESQVSLSG 238

Query: 236 YTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLL 287
           +           +     + ++FIN R +  K IL  IR  Y           YP+  L 
Sbjct: 239 FLPKRDADHSLTSLSTPERSFIFINSRPIHQKDILKLIRQYYTLKCLKESTRLYPIFFLK 298

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           +++    VDVN+ P KS +  +N   +   +   +   
Sbjct: 299 IDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTC 336


>gi|323346896|gb|EGA81175.1| Pms1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 873

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 178/441 (40%), Gaps = 37/441 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 1   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 61  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 121 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 180

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 181 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 240

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 241 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 301 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 355

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +     +   S T+  +       R  +N    +   +
Sbjct: 356 YNRQELALPKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENYHTARSESNQSNHAHFNS 415

Query: 389 YSEDNDPVEESEATHYQLGIA 409
            +   D    +E T    G  
Sbjct: 416 TTGVIDKSNGTELTSVMDGNY 436



 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 491 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 550

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 551 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 598

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 599 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 657

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 658 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 714

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 715 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 770

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 771 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 830

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 831 TMTRVVHNLSELDKPWNCPHGRPTMRHL 858


>gi|157136917|ref|XP_001663861.1| DNA mismatch repair protein pms2 [Aedes aegypti]
 gi|108869823|gb|EAT34048.1| DNA mismatch repair protein pms2 [Aedes aegypti]
          Length = 926

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 97/432 (22%), Positives = 178/432 (41%), Gaps = 46/432 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +    +++I +G+++   + A+KEL+EN++DA ++ VE  +   G    +++DNG 
Sbjct: 63  KISAIDRDTVHRICSGQVVLNLATAVKELVENAIDAGATVVEVKLKEQGADLVEVSDNGS 122

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +       ++ TSK+ +  D + I TFGFRGEAL S+ A+S + +++R      G 
Sbjct: 123 GVEEKNFEGLTAKYHTSKLKEFADLACIETFGFRGEALSSLCALSDMVVVTRHETAPHGT 182

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++ +     I    P A   GT V + +LF T+P R   F K+ + E   +  +++   +
Sbjct: 183 KLELDHRGAIVKRSPCARAVGTTVSLSNLFATLPVRKKEFHKNIKREFIKMCQILQAYCL 242

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKS------- 228
               V    S       K    ST G  +  + I+ V G       V+L           
Sbjct: 243 VSVGVRIICSNQNKKGVKSVIMSTQGSNSVLDNITTVFGSKQSTELVQLKPAISSSGKIL 302

Query: 229 -----------------------NEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKF 263
                                  +  T++GY         R + ++ + F+N R  + K 
Sbjct: 303 DLNESDFDDTLSLTQEEVDKLNLSRYTIEGYISSCAHGSGRSSKDRQFFFVNSRPCEPKA 362

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
           I+  +   Y +   + + P V L L++    VDVN+ P K  I   N  I+   + +S+ 
Sbjct: 363 IIKMVNETYHKY-NVNQCPFVYLNLKMARSDVDVNLTPDKRQILVNNEKILLLALKKSLM 421

Query: 324 K-------AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
           K           + +  S+      IS   +D   +  +   +    N +  L    +R 
Sbjct: 422 KTYGTIPSTFKMQNLDVSATSRLLNISVMSKDGGDEDSVDDQSMEAPNPRRMLAAFSHRG 481

Query: 377 STNDLLPSDDPT 388
           ++     SD   
Sbjct: 482 ASAGNSTSDSTP 493



 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +     + +++   E     +       Q +  +II++    L I+DQHA  E+  FE +
Sbjct: 708 NPSNNRAAEDELQTEISKDRFAQMEIIGQFNLGFIIARLEQDLFIIDQHATDEKYNFEDL 767

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIRE 499
           ++    T + +Q L+ P+ ++L      ++M++ E     G K E  G       + +  
Sbjct: 768 QRT---TVLQNQKLVVPQQLELTAVNEMILMDNLEIFEMNGFKFEIDGSAEPTRKVKLVA 824

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P   + +   + + ++I  + D+  +     R+  + A+ AC  S+  G+ +   EM R
Sbjct: 825 KPFSKNWEFGKEDIDELIFMLQDAPNSVCRPSRVRAMFASRACRKSVMIGKALSKAEMRR 884

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L+  M +      C HGRPT   L
Sbjct: 885 LVSHMGEIEQPWNCPHGRPTMRHL 908


>gi|19880918|gb|AAM00563.1|AF458976_6 PMS1 [Saccharomyces cerevisiae]
          Length = 908

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/445 (21%), Positives = 174/445 (39%), Gaps = 37/445 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA +S++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANASQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++ +       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVTTTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 271

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 272 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 331

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 332 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 386

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +         S T+  +       R  +N    +   +
Sbjct: 387 YNRQELALPKRMCSQSEQQAQKRLKTEVVDDRSTTHESDNENYHSARSESNQSNHAHFNS 446

Query: 389 YSEDNDPVEESEATHYQLGIACAQI 413
             E    V +         +     
Sbjct: 447 TCEGTTGVIDKSNGTELTSVMDGNY 471



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 526 EFQNITSPDKARSLEKVVEEPVFFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 585

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 586 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 633

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 634 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 692

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 693 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 749

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 750 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 805

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 806 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACKSSIMIGKPLNKK 865

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 866 TMTRVVHNLSELDKPWNCPHGRPTMRHL 893


>gi|290978294|ref|XP_002671871.1| predicted protein [Naegleria gruberi]
 gi|284085443|gb|EFC39127.1| predicted protein [Naegleria gruberi]
          Length = 662

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 190/487 (39%), Gaps = 59/487 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+ LSE++IN+IAAGE+I  PS AIKEL+ENSLDA +  +       G  +FQITDNG 
Sbjct: 20  KIKPLSEEVINKIAAGEVIAAPSNAIKELLENSLDAGADSITIEFGDAGLKYFQITDNGC 79

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++++ +  +RH TSK+S  +D  +I TFGFRGEAL S+   +H+T+ S+  Q +T  
Sbjct: 80  GIGAKDLEIVCERHTTSKLSSFEDLRSIATFGFRGEALSSVSTCAHVTITSKTEQQSTAL 139

Query: 120 QIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                  K++          GTI+   +LFF    R   + +   E   I  ++   A+ 
Sbjct: 140 FATYRDGKLTGPMKKRSGARGTIIRAENLFFDNKTRRESV-NLNTEPKAIQKIVTAYALF 198

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              VS T       +  ++   T  N  + I  + G       +E +  + +I L G   
Sbjct: 199 NTGVSITLKKQGETKPIVHTL-TKNNVRQNIKALFGPKIEKEIIEADINNEKIELTGK-- 255

Query: 239 IPTFNRGNANQFYVFIN-GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
                         F N   + ++K     I                           +V
Sbjct: 256 ------------MYFTNVNYSSKEKAFTLFIN--------------------------NV 277

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           N+HP K  +   +   I   +   ++K +     S +  +S+K   S       K+  P 
Sbjct: 278 NMHPTKKEVAVLDEDRIIEEVKDVLRKKLLGSNSSRTFEVSQKATPS-------KSFTPI 330

Query: 358 YATSLTNTQE-KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
              +L N  E    +    L++  L    +   ++      +     +Q   +  +    
Sbjct: 331 LPPNLINDDEDDAIIPTPSLTSPKLATQKELPKNKVRTSASDQTGQIHQYFPSLKRNFTE 390

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
                    + +  Q    +R    + +      +     L       L     ++  ++
Sbjct: 391 EEEEDEDAEISVSAQPVTKKRKENSQSKSPEAEHEENVDDLE-----SLKSLRNSINAKN 445

Query: 477 DEDLHRL 483
             +L +L
Sbjct: 446 HAELEKL 452


>gi|157124912|ref|XP_001660584.1| DNA mismatch repair protein pms2 [Aedes aegypti]
 gi|108873824|gb|EAT38049.1| DNA mismatch repair protein pms2 [Aedes aegypti]
          Length = 874

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/432 (22%), Positives = 178/432 (41%), Gaps = 46/432 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +    +++I +G+++   + A+KEL+EN++DA ++ VE  +   G    +++DNG 
Sbjct: 19  KISAIDRDTVHRICSGQVVLNLATAVKELVENAIDAGATVVEVKLKEQGADLVEVSDNGS 78

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +       ++ TSK+ +  D + I TFGFRGEAL S+ A+S + +++R      G 
Sbjct: 79  GVEEKNFEGLTAKYHTSKLKEFADLACIETFGFRGEALSSLCALSDMVVVTRHETAPHGT 138

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++ +     I    P A   GT V + +LF T+P R   F K+ + E   +  +++   +
Sbjct: 139 KLELDHRGAIVKRSPCARAVGTTVSLSNLFATLPVRKKEFQKNIKREFIKMCQILQAYCL 198

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKS------- 228
               V    S       K    ST G  +  + I+ V G       ++L           
Sbjct: 199 VSVGVRIICSNQNKKGVKSVIMSTQGSNSVLDNITTVFGSKQSTELIQLKPAISSSGKIL 258

Query: 229 -----------------------NEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKF 263
                                  +  T++GY         R + ++ + F+N R  + K 
Sbjct: 259 DLNESDFDDTLSLTQEEVDKLNLSRYTIEGYISSCAHGSGRSSKDRQFFFVNSRPCEPKA 318

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
           I+  +   Y +   + + P V L L++    VDVN+ P K  I   N  I+   + +S+ 
Sbjct: 319 IIKMVNETYHKY-NVNQCPFVYLNLKMARSDVDVNLTPDKRQILVNNEKILLLALKKSLM 377

Query: 324 K-------AINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
           K           + +  S+      IS   +D   +  +   +    N +  L    +R 
Sbjct: 378 KTYGTIPSTFKMQNLDVSATSRLLNISVMSKDGGDEDSVDDQSMEAPNPRRMLSAFSHRG 437

Query: 377 STNDLLPSDDPT 388
           ++     SD   
Sbjct: 438 ASAGNSTSDSTP 449



 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +     + +++   E     +       Q +  +II++    L I+DQHA  E+  FE +
Sbjct: 656 NPSNNRAAEDELQTEISKDRFAQMEIIGQFNLGFIIARLEQDLFIIDQHATDEKYNFEDL 715

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIRE 499
           ++    T + +Q L+ P+ ++L      ++M++ E     G K E  G       + +  
Sbjct: 716 QRT---TVLQNQKLVVPQQLELTAVNEMILMDNLEIFEMNGFKFEIDGSAEPTRKVKLVA 772

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
            P   + +   + + ++I  + D+  +     R+  + A+ AC  S+  G+ +   EM R
Sbjct: 773 KPFSKNWEFGKEDIDELIFMLQDAPNSVCRPSRVRAMFASRACRKSVMIGKALSKAEMRR 832

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L+  M +      C HGRPT   L
Sbjct: 833 LVSHMGEIEQPWNCPHGRPTMRHL 856


>gi|302772799|ref|XP_002969817.1| hypothetical protein SELMODRAFT_171139 [Selaginella moellendorffii]
 gi|300162328|gb|EFJ28941.1| hypothetical protein SELMODRAFT_171139 [Selaginella moellendorffii]
          Length = 705

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 153/334 (45%), Gaps = 29/334 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  + +  I++I +G++I   + A+KEL+ENSLDA ++ +E  +   G    +++DNG 
Sbjct: 10  PIHPIDKASIHRICSGQVILDLATAVKELVENSLDAGATSIEVKLKEHGGDAIEVSDNGS 69

Query: 62  GMTSE---------EIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMS 110
           G++S+         ++     ++ TSK+SD  D  ++ +FGFRGEAL S+ +++ +++ +
Sbjct: 70  GVSSDNYQVFFLSLDLFGLTLKYHTSKLSDFSDLQSLTSFGFRGEALSSLCSLADVSIHT 129

Query: 111 RPPQNNTGAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLI 168
           R  ++ TG +I       I S    A   GT V V  LF  +P R   FL++ + E + +
Sbjct: 130 RTKEDETGTRISYNRAGLIVSKETAARQVGTTVTVSKLFSPLPVRHKEFLRNVRREYSRM 189

Query: 169 TDVIRRMAIAYPKVSFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
             +++  A+    V    + +   +      ++  G+  E I  + G   +         
Sbjct: 190 IAILQAYALISKNVRLVCTNLVGKSSRSTILRTQGGSVRENIVTIFGPKTMACLDPPGSG 249

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
           S               RG++++ + F+NGR V        +   Y       +YP+ VL 
Sbjct: 250 SG--------------RGSSDRQFFFVNGRPVDLPKFSKLLNELYKSFNSQ-QYPMAVLN 294

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
             +     DVNV P K  +   + +   + +  +
Sbjct: 295 FRLPTTAYDVNVTPDKRKLFLHSESSFMDGLRNA 328



 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 13/242 (5%)

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
            P  A       E     ++  +  +   +D     E+   +        +      Q +
Sbjct: 459 APPNAFPKEKNFETARPADHSSNPQNRSATDGEALGEECGGLLSEAPLLKKCAKILGQFN 518

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++    L I+DQHA+ E+  FE++     ST +  Q LL P  + L   E   I 
Sbjct: 519 LGFIIARLDSDLFIIDQHASDEKYNFERL---SKSTVLNRQPLLRPMPLHLSSAEEITIS 575

Query: 475 EHDEDLHRLGIKAERFGP----NAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTT 526
            H E   + G              I +  +P          ++ +L+  + ++   SS+ 
Sbjct: 576 THMEVFRQNGFDFTEQEDAPPGQRILLSAVPFSKNVTFGVSDVQELVSLLSEDYGSSSSH 635

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
                R+ ++LA+ AC  SI  G  +   EM +++R +        C HGRPT   L   
Sbjct: 636 LVQPSRVRSMLASRACRSSIMIGDALSKKEMEKVVRHLADLDAPWNCPHGRPTMRHL--Y 693

Query: 587 DI 588
           D+
Sbjct: 694 DL 695


>gi|19880869|gb|AAM00521.1|AF458969_6 PMS1 [Saccharomyces cerevisiae]
 gi|19880925|gb|AAM00569.1|AF458977_6 PMS1 [Saccharomyces cerevisiae]
 gi|791102|emb|CAA60176.1| DNA mismatch repair protein [Saccharomyces cerevisiae]
 gi|1301977|emb|CAA95957.1| PMS1 [Saccharomyces cerevisiae]
 gi|2253174|emb|CAA95956.1| PMS1 [Saccharomyces cerevisiae]
          Length = 904

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 178/441 (40%), Gaps = 37/441 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 271

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 272 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 331

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 332 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 386

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +     +   S T+  +       R  +N    +   +
Sbjct: 387 YNRQELALPKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENYHTARSESNQSNHAHFNS 446

Query: 389 YSEDNDPVEESEATHYQLGIA 409
            +   D    +E T    G  
Sbjct: 447 TTGVIDKSNGTELTSVMDGNY 467



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 522 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 581

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 582 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 629

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 630 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 688

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 689 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 745

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 746 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 801

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 802 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 861

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 862 TMTRVVHNLSELDKPWNCPHGRPTMRHL 889


>gi|256270259|gb|EEU05477.1| Pms1p [Saccharomyces cerevisiae JAY291]
          Length = 877

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 176/445 (39%), Gaps = 37/445 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 1   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 61  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 121 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 180

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 181 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 240

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 241 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 301 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 355

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +         S T+  +       R  +N    ++  +
Sbjct: 356 YNRQELALPKRMCSQSEQQAQKRLKTEVVDDRSTTHESDNENYHSARSESNQSNHANFNS 415

Query: 389 YSEDNDPVEESEATHYQLGIACAQI 413
             E    V +         +     
Sbjct: 416 TCEGTTGVIDKSNGTELTSVMDGNY 440



 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 495 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 554

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 555 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 602

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 603 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 661

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 662 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 718

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 719 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 774

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 775 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKE 834

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 835 TMTRVVHNLSELDKPWNCPHGRPTMRHL 862


>gi|330927226|ref|XP_003301792.1| hypothetical protein PTT_13379 [Pyrenophora teres f. teres 0-1]
 gi|311323230|gb|EFQ90113.1| hypothetical protein PTT_13379 [Pyrenophora teres f. teres 0-1]
          Length = 934

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 95/415 (22%), Positives = 169/415 (40%), Gaps = 21/415 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L      QI +G+++  PS  +KELI+NSLDA +  +   IA       Q+ D+G G
Sbjct: 13  IAALPPATARQIGSGQVLVDPSSVVKELIDNSLDARAKSIFVDIAANTIDSIQVKDDGHG 72

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
           + +E+ P+  +R+CTSKI D  D  N+     GFRGEAL S+  +S  L + +R      
Sbjct: 73  IPAEDRPLVCRRYCTSKIRDFHDLRNVGGKWLGFRGEALSSMAEMSASLDVATRVEGEPV 132

Query: 118 GAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
             +       +++S    +   GT V+V   F  IP R     K+       I  +++  
Sbjct: 133 AVKIKYNRNGELASTVHDSHPVGTTVKVAKFFDYIPVRKQTALKNSSRFLAKIRRLMQAY 192

Query: 176 AIAYPKVSFTFSTIKSNRYK---MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           A+A P   F    +K+       +     + N  +   +V+G+D          +++   
Sbjct: 193 ALARPTTRFRLHVLKARNSNSDFVYAPKVDANVEDAALKVVGKDCALQCDWTAMEADGFE 252

Query: 233 LQGYTGIPTFNRGNANQFYVFI--NGRT-VQDKFILSTIRTAYAETIPLGRY-------P 282
           +  +   PT NR   +    F+  +GR     +  +  I  A+ E +            P
Sbjct: 253 IHAFLPKPTANRSKISGQGAFVSADGRPLSSSRGTIKQIVVAFKERLRKSNSSLAGVKEP 312

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI 342
              + +   P   D N+ PAK  + F N  ++ + ++  +  +   +    +S     + 
Sbjct: 313 FFCMNIICPPGSYDPNIEPAKDDVMFENSEVVLS-VVNRLLTSYYPEASGDASDEEPPLS 371

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           S  H D  P+T       S+   +    + E R  + +        Y  D + +E
Sbjct: 372 SQQHLDTPPETLQGSDGPSINVQEHATPIPEGRPKSREQPRWRSTMYGIDEEDIE 426


>gi|321461542|gb|EFX72573.1| putative MLH2, MutL protein 2 [Daphnia pulex]
          Length = 877

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 13/336 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L    +  I A +I       +KEL+ENSLDA S+ V   +   G S  ++TDNG G
Sbjct: 7   ISELPPSTVKLITATQIATSVCNIVKELVENSLDASSTVVRVKLENSGLSKIEVTDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E +      H TSKI    D   + T+GFRGEAL +I AV+ L++ ++  ++   + 
Sbjct: 67  VSKENVLKMALPHYTSKISQHQDLEALSTYGFRGEALAAICAVAKLSVTTKTAEDPVAST 126

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMA 176
             +     +  V+P  ++ GT+V +  LF+ IP R  +    K ++ E   + +++    
Sbjct: 127 YTMDSNGDVVDVKPSHLSQGTLVVMTSLFWNIPVRKQYYQTPKRKKDELIKVEELLLSYG 186

Query: 177 IAYPKVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           + +P++  +     S  ++         N  + +   I  +    + +   +   +  + 
Sbjct: 187 LIHPELHLSLHHDHSLIWQKNRATDFTANIRQTLGHGICSNMEFISEDEVIQMVLVVPKR 246

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR-----YPVVVLLLEI 290
              +    R   ++ + FIN R V  K I   ++      I  G      YP+ ++ L+ 
Sbjct: 247 TAPLDICYRNRPDRCFTFINQRPVISKDIEKLMKE-LYGFIRDGDQKSAVYPIFIVSLQF 305

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
              +VDVNV P K+ +  +    +   I + +   +
Sbjct: 306 PGDEVDVNVEPNKTKVLMKRQGDVLELIRKRVSDIL 341



 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 88/252 (34%), Gaps = 33/252 (13%)

Query: 353 THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
           +  P   T    ++  +        T+  +   D +    N  +E S+           +
Sbjct: 619 SQTPVIRTERAPSRSVVASAPPPKRTSSSI---DFSMDILNQSLESSQLKTKDQWFCLKK 675

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTKITSQTLLTPEIIDLLEGECA 471
           I     +    + ++ V+    +E +++ ++  +    ++  S  +L  +          
Sbjct: 676 IESGSWLCSNRNDVMAVNFTRLYEMILYTRLVNEHVIPSRAVSNPMLIDKKTFGDLMSWR 735

Query: 472 LIMEHDEDLH-------------------RLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            ++    +                     RLG+ ++  G   + + ++PA + K ++   
Sbjct: 736 KLLSLPSEWETATTRTITDSRVVANGVGIRLGVDSDDAG---VVVYQVPANVQKFDL-ND 791

Query: 513 LRDIIDEIIDSSTT--YTLQDRIENILATMACYGSIRSGRKMQSI--EMNRLLREMEKNP 568
           +R+++ ++    +T       +I   L + A   +  +GR  +    E+  LL +     
Sbjct: 792 VRNLLRQVTKDGSTVESCRPGQIIMYLKSEAARLA--AGRCTEPETNEVCELLEQWLSTD 849

Query: 569 NSSQCNHGRPTF 580
             + C HG P F
Sbjct: 850 PENVCLHGEPVF 861


>gi|172203|gb|AAA34885.1| DNA mismatch repair protein [Saccharomyces cerevisiae]
          Length = 904

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 178/441 (40%), Gaps = 37/441 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 271

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 272 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 331

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 332 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 386

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +     +   S T+  +       R  +N    +   +
Sbjct: 387 YNRQELALPKRMCSQSEQQAQKRLKTEVFDDRSTTHESDNENYHTARSESNQSNHAHFNS 446

Query: 389 YSEDNDPVEESEATHYQLGIA 409
            +   D    +E T    G  
Sbjct: 447 TTGVIDKSNGTELTSVMDGNY 467



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 522 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 581

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 582 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 629

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 630 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 688

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 689 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKSDLFIVDQHASDEKYNFETL 745

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 746 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 801

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 802 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 861

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 862 TMTRVVHNLSELDKPWNCPHGRPTMRHL 889


>gi|50552768|ref|XP_503794.1| YALI0E10769p [Yarrowia lipolytica]
 gi|49649663|emb|CAG79385.1| YALI0E10769p [Yarrowia lipolytica]
          Length = 893

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 27/376 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ +    I QI + +++   + A+KE++ENSLDA +  VE  I   GK   +I D+G
Sbjct: 1   MAIKAIDTASIRQITSAQVVTDLNSAVKEVVENSLDANAKNVEIKIFDYGKDRVEIIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+   E     ++H TSKI   DD +++ ++GFRGEAL SI  ++ L +++    +   
Sbjct: 61  DGIPKSEFDHVARKHMTSKIIEFDDLASVLSYGFRGEALASICEMAELEIVTCGNTSEPA 120

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMA 176
            ++  + +  I S +PVA   GT V +R LF +   R     K+ +     +  ++   A
Sbjct: 121 TRLEFNRDGSIKSTKPVAGKRGTTVTIRRLFHSAIVRRKEFEKNAKNSHPGLIRMLETYA 180

Query: 177 IAYPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS------ 228
           I    V F+        NR        +G+  + + +V G +   + +++N         
Sbjct: 181 IIRSDVRFSIVHVTNNKNRNVQLTTDGSGDMIKTVGRVFGNELKAHLMDVNFSFDVNYTK 240

Query: 229 -----------NEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                        + + G    P F       ++  +FIN R    K +    +  Y   
Sbjct: 241 RGFLSSEELPNYVVRVTGLVSKPVFGMGRNANDKQLLFINKRPFTMKKLQKVFQDVYTSF 300

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-TS 334
           + L + PV+++ L+I P   DVNV P K  I   N   + N I +++       G S   
Sbjct: 301 VHLQK-PVLIINLDIPPSAYDVNVSPDKRTIMLHNEVDVINCIRENLVDVFESSGQSVPR 359

Query: 335 SVLSKKMISSFHQDNA 350
             +  K+     Q   
Sbjct: 360 HTVDVKVQPMSSQSYW 375



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
               +       Q ++ +II    + L I+DQHA+ E+  FE++++    TKIT Q  + 
Sbjct: 693 SRNDFLNFNIIGQFNEAFIIVSDPENLFIIDQHASDEKYNFERLQR---DTKITPQPFVN 749

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI------AIREIPAILSKKNIPQLL 513
           P  ++L   E +++  + E L + G        N++       IR  P   +        
Sbjct: 750 PLTVELTPLEESVVSSNLELLKKNGFLVTI--DNSLPPGEKCQIRGFPQTGNIVFGMPDF 807

Query: 514 RDIIDEIIDS-STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           R+++    D+         ++ ++ A+ AC GS+  G  ++  EM+R++R +        
Sbjct: 808 RELVVLFEDNPGNDSVRPKKVRDVFASRACRGSVMVGTALKEKEMDRIVRNLAGLDKPWN 867

Query: 573 CNHGRPTFIKLKLSDIEKL 591
           C HGRPT   L   +I+K 
Sbjct: 868 CPHGRPTMRHL--MEIDKW 884


>gi|19880883|gb|AAM00533.1|AF458971_6 PMS1 [Saccharomyces cerevisiae]
          Length = 908

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 93/416 (22%), Positives = 175/416 (42%), Gaps = 39/416 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 271

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 272 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 331

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS-------I 322
             Y     + ++P V L LE+    +DVNV P K  I   N   + +    +        
Sbjct: 332 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQ 390

Query: 323 QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
           + A+ K+  S S   ++K + +   D+   TH+       ++  E         ++
Sbjct: 391 ELALPKRMCSQSEQQAQKRLKTEVVDDRSTTHVSDNENYHSSRSESNQSNHAHFNS 446



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 134/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 526 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 585

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T       V  +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 586 ERRGSTDTEQDDE--VDSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 633

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 634 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 692

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 693 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 749

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 750 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VRLL 805

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 806 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACKSSIMIGKPLNKK 865

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 866 TMTRVVHNLSELDKPWNCPHGRPTMRHL 893


>gi|94266938|ref|ZP_01290590.1| DNA mismatch repair protein [delta proteobacterium MLMS-1]
 gi|93452367|gb|EAT02989.1| DNA mismatch repair protein [delta proteobacterium MLMS-1]
          Length = 558

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 124/562 (22%), Positives = 226/562 (40%), Gaps = 81/562 (14%)

Query: 110 SRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           SRP     GA + ++   +  V       GT VEVRDLF  +PAR  FLKS + E   + 
Sbjct: 1   SRPTGAELGAMVEVAYGTVRKVSEAGAPVGTTVEVRDLFGNVPARRKFLKSARTELYHVE 60

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE-------------- 215
           + IR  A+A+P +   +     + ++        +   R++++                 
Sbjct: 61  ECIRNCALAFPYLGVDYQVNGRSAWQWPA--GVDDLAGRLARLFPRGEVGELLRVAGGEL 118

Query: 216 -----------DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFI 264
                      + + + + + ++     + G   +P        +  + +NGR V+D+ +
Sbjct: 119 AEQLLAAGRPLELLAHHLAVGDQPPAPVVAGLLPLPEAMPATGGKLRMLVNGRPVRDRLL 178

Query: 265 LSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
              +  A    +  GR P   L + IDP  VDVNVHP K  IRFR    ++  + +++  
Sbjct: 179 GQAVGEALRNELARGRRPAGALFIGIDPTLVDVNVHPTKQEIRFRAQAGVQEAVRRAVTA 238

Query: 325 AINKKGISTSSVLSKK--------------------------------------MISSFH 346
           A+             +                                            
Sbjct: 239 ALKTHERQRRDAFFGQPAAAQAAATSRRPPAAEQAPRQEKVTDSGLVTGPSATTAADDPG 298

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           +D  P             T E   + E R  T     ++ PT +     + E      + 
Sbjct: 299 KDRRPPPTQAAGEADAQPTGEATVVGEQRRPTPVAEFAESPTVTSPAPSLAEKGERWSEE 358

Query: 407 GIA-------------CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
                             Q+ ++YI  ++   L+ VDQHAAHERL+FEK+R+ +    + 
Sbjct: 359 AACPTPAMVDESRPRLVGQVLKSYIFCESGGALLAVDQHAAHERLLFEKLRRQYQQQGLA 418

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P +++L   E  ++    E++ RLG++   FG ++  ++ +PA+L+     +++
Sbjct: 419 CQGLLFPAVLELSPAEATVLERRAEEIARLGLEVAAFGGHSYLVKAVPALLAGAAPAEIV 478

Query: 514 RDIID-EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
             ++   + +          +E +LA MAC  +I++G++++  EM  LL EM++    S+
Sbjct: 479 AGVLAPWLAEGGRAGAAT--LEAVLAQMACKAAIKAGQRLEPAEMEGLLAEMQQAGLFSR 536

Query: 573 CNHGRPTFIKLKLSDIEKLFGR 594
           C HGRP   +    ++EK F R
Sbjct: 537 CPHGRPVVRRFAPGELEKWFHR 558


>gi|320592269|gb|EFX04708.1| DNA mismatch repair protein [Grosmannia clavigera kw1407]
          Length = 917

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 99/430 (23%), Positives = 180/430 (41%), Gaps = 37/430 (8%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           I +G++I       KEL+ENS+DA ++ +E      G    ++ DNG+G++++       
Sbjct: 5   IQSGQVIVNLCSVAKELVENSIDAGATSIEVRFKNQGLDSVEVQDNGYGISTQNYEGLAL 64

Query: 74  RHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR-PPQNNTGAQIAISGE-KIS 129
           +H TSK+S  DD   + TFGFRGEAL S+ A+SH ++++        G ++      ++ 
Sbjct: 65  KHYTSKLSKYDDLDTLQTFGFRGEALSSLCALSHFSVVTCLAADVPKGTRLDFETSGRLK 124

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
               VA   GT V V  LFF +P R     ++ + E   +  ++ + A     V FT S 
Sbjct: 125 GTSVVAAQKGTTVTVEKLFFNLPVRRRELERNVKREWGKVVSLLNQYACIQTGVKFTVSQ 184

Query: 189 IKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------------------- 223
             S   ++   ST GN    + +  + G   + + ++                       
Sbjct: 185 QPSKGKRVVLFSTKGNATTRDNLINIFGAKTMTSLIQLGLTMELELTRDARAKWTSPVAD 244

Query: 224 ---LNEKSNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
                    EI ++GY   P   +     ++   F+NGR  +           Y      
Sbjct: 245 GGGGGGSIQEIRVEGYVSRPAHGQGRQTPDRQMFFVNGRPCKLPQFAQLFGEVYRTY-NT 303

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS-TSSVL 337
            + P +   +++D    DVNV P K  I   +   + + + +S+ +   K+ I+  +S L
Sbjct: 304 SQAPFIFADIQLDTHLYDVNVSPDKQTILLHDQGKMLDNLRESLIELFEKQEITMPTSQL 363

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           S + I++F +  A +   P  A +  + +  +  QE +        +  P+    +    
Sbjct: 364 SSQKITAFRKPAASQASSPSSALAEKSDRAAVGEQETQPKAKLSRTTQSPSSPPRSGHAS 423

Query: 398 ESEATHYQLG 407
           + E   YQLG
Sbjct: 424 DDEEIVYQLG 433



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 30/186 (16%)

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHA+ E+  FE++R    +T + SQ L+ P+ + L   E  ++ E    L   
Sbjct: 698 DELFIIDQHASDEKYNFERLR---ATTTLQSQRLVQPKRLSLTAVEEEVVFESRAVLAAN 754

Query: 484 GIKA-------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS------------ 524
           G          E  G     +  +P           L ++I  + +              
Sbjct: 755 GFVVDVVVDGSEPVGARC-RLLTLPLSRETTFDLGDLEELIALLAEHPGAAYADNLDCLD 813

Query: 525 -------TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
                  T      ++  +LA  AC  SI  GR +   +M  +L  M        C HGR
Sbjct: 814 LSLSLSSTPIPRPAKVRRMLAMRACRSSIMVGRALSHRQMAAVLAHMGHMDKPWNCPHGR 873

Query: 578 PTFIKL 583
           PT   L
Sbjct: 874 PTMRHL 879


>gi|19880897|gb|AAM00545.1|AF458973_6 PMS1 [Saccharomyces cerevisiae]
          Length = 908

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 175/445 (39%), Gaps = 37/445 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 271

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 272 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 331

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +      +  ++  
Sbjct: 332 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDI----FKTTLSDY 386

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPT 388
                  L K+M S   Q    +         S T+  +       R  +N    +   +
Sbjct: 387 YNRQELALPKRMCSQSEQQAQKRLKTEVVDDRSTTHESDNENYHSARSESNQSNHAHFNS 446

Query: 389 YSEDNDPVEESEATHYQLGIACAQI 413
             E    V +         +     
Sbjct: 447 TCEGTTGVIDKSNGTELTSVMDGNY 471



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 526 EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 585

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 586 ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 633

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 634 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 692

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 693 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 749

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 750 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 805

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 806 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 865

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 866 TMTRVVHNLSELDKPWNCPHGRPTMRHL 893


>gi|19074926|ref|NP_586432.1| DNA MISMATCH REPAIR PROTEIN OF THE MUTL/HEXB FAMILY
           [Encephalitozoon cuniculi GB-M1]
 gi|19069651|emb|CAD26036.1| DNA MISMATCH REPAIR PROTEIN OF THE MUTL/HEXB FAMILY
           [Encephalitozoon cuniculi GB-M1]
          Length = 630

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 113/650 (17%), Positives = 229/650 (35%), Gaps = 87/650 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IRKL E +  +I A   ++   I +KELIEN++D+  + +  ++         + DNG G
Sbjct: 2   IRKLPEDVGKRIRAQRSVQSIYIVVKELIENAIDSGCTWIRILVDDA----ITVEDNGCG 57

Query: 63  MTSEEIPMAVQRHCTSKIS--------DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
           ++  ++        TSK S         D     ++GFRG+AL  +  V  L ++SR  +
Sbjct: 58  IS--DLDKVGVEGATSKESMAYYVLGYADRVEKFSYGFRGQALSCLAEVCDLEIISR-SE 114

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEV---------RDLFFTIPARLNFLKSEQVET 165
           ++   +   S   I      A   GT V V         R        + +  K   +  
Sbjct: 115 HSFALRKDFSTNAI---SKCARERGTTVHVRNLFKNCPLRRPMADSGLKRDLGKICSLIE 171

Query: 166 NLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
           +          + + K     S       +  F+S   +F  +  +V         + + 
Sbjct: 172 SYRCANKINFTLFH-KRKVLLSCGGYETVREYFESNYPSFAGKCMEVCNGQMDLFMLPVC 230

Query: 226 EKSNEITLQGY---TGIPTFNRGNANQFYVFINGRTVQ------------DKFILSTIRT 270
            K  +  +                 ++F +++ G                       I  
Sbjct: 231 VKEPKQLMFSERRPISNRRILNAVKSEFGLYVEGSPTFVLVIKGYGDVNVSADKSEVIFA 290

Query: 271 AYAETIPLGRYP---VVVLLLEIDPR----QVDVNVHPAKSYIRFRNPTII--------- 314
             A  + L R          + ++P     +   NV             ++         
Sbjct: 291 DEAGILNLLRSEIGRFFSSEMYLNPASAVRRQKSNVQERSDAGEDSREDLMARGSSRISE 350

Query: 315 -RNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
              F+  +     +++     S    + + S  +    +T   +     T +   L   E
Sbjct: 351 DFPFLKPAKTTIPHREKAQQRSAGPPEGMESSKELLPEETVGIENTKVETVSSSPLKEHE 410

Query: 374 NRLST---NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG----- 425
           +   T   N+ + S +   +         E    ++  +     +  II Q  +G     
Sbjct: 411 SPPETEKKNEEVGSKENFAAGAYSFFRNDELVQSKISFSKGDFGRLEIIGQFNNGFIITK 470

Query: 426 --------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
                   LV VDQHAA E   FE +++ F   K   Q++++P  +DL   E  ++ ++ 
Sbjct: 471 LEKNKKTYLVAVDQHAADEIRNFEDIKKTFCLKK---QSVISPVKLDLTPIEEMVVSDNV 527

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           E   R G   +        +  +P   ++    +  R++++++ +    +    +  +I+
Sbjct: 528 ELFERNGFVVKDG-----MLETVPVYKNQTFGIREFRELLEDVKNEEYEF---RKARSII 579

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
           A+ AC  S+  G  +   +M R+++ +       +C HGRPTF+ L  ++
Sbjct: 580 ASKACRTSVMIGDVLSMADMKRIVKSLASLERPWKCPHGRPTFMVLNEAE 629


>gi|290560158|pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
           Prote
 gi|290560159|pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
           Prote
          Length = 367

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 159/363 (43%), Gaps = 32/363 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 3   MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 62

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 63  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 122

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 123 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 182

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG----------------EDFI 218
           I    + F+   I  K  +  +     N +  + IS V G                  F 
Sbjct: 183 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPFK 242

Query: 219 NNAVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIR 269
           N  +              +I ++GY    +F     + ++ ++++N R V+   +L    
Sbjct: 243 NRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCN 302

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
             Y     + ++P V L LE+    +DVNV P K  I   N   + +    ++    N++
Sbjct: 303 EVYKTFNNV-QFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQ 361

Query: 330 GIS 332
            ++
Sbjct: 362 ELA 364


>gi|227529691|ref|ZP_03959740.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350481|gb|EEJ40772.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
          Length = 160

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 2/158 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI +L+  + +QIAAGE+IERP+  +KEL+ENSLDA S R++ ++   G    ++ D+G 
Sbjct: 3   KIHELTNVLADQIAAGEVIERPASIVKELVENSLDANSKRIDIIVENSGLDSIRVIDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +A +RH TSKI+   D   + T GFRGEALPSI +V+ +TL +  P + TG+
Sbjct: 63  GIADDDVKIAFKRHATSKITTRRDLFKVRTMGFRGEALPSIASVADVTLTTATPGSTTGS 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF 157
            I I G ++  ++P     GT V VR+LFF  PARL +
Sbjct: 123 LIHIHGGELVDLKPGPARQGTDVVVRELFFNTPARLKY 160


>gi|45191022|ref|NP_985276.1| AER421Wp [Ashbya gossypii ATCC 10895]
 gi|44984090|gb|AAS53100.1| AER421Wp [Ashbya gossypii ATCC 10895]
          Length = 903

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 166/420 (39%), Gaps = 31/420 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +++  +++I +G++I     A+KE++ENSLDA + ++E      G    +  DNG 
Sbjct: 4   KINAINQADVHRITSGQVIIDLVAAVKEVVENSLDAHADKLEITFRNYGLEAIECADNGD 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          +H TSKI   +D + + TFGFRGEAL SI A++ LT+++         
Sbjct: 64  GIPDSNFDSLALKHHTSKIEEFEDLTRVTTFGFRGEALASICAMASLTVITTQKGPKAHK 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
               S  ++      + N GT V++R LF  +P R     ++ + +      +++  A+ 
Sbjct: 124 LEYDSHGRLVKKTVTSRNKGTTVQLRHLFNNMPVRKKEFVRNFKKQFGKCVTLLQSYALL 183

Query: 179 YPKVSFTFSTIKSNRYK--MNFQSTNGNFPERISQVIGEDFINNAVELNEK--------- 227
                 +   + +   K  +       +  + I  V G D ++   ++            
Sbjct: 184 SENCRLSIFNVNAAGSKSLLLSTPGRNDISKNILTVFGSDGMHGLQKVGLHLDLNEYKEK 243

Query: 228 --------------SNEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILSTIRTA 271
                          + I + GY    +F  G    ++ +++IN R V    +L      
Sbjct: 244 MLKKYSEDSTLDDADHRIAVTGYISRASFGCGRSGKDRQFIYINKRPVDYPQVLKCCNDI 303

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y     + +YPV++L  E+ P+ VDVNV P K  +   N   +   + + +    N++ +
Sbjct: 304 YRSFNNV-QYPVIILNFELSPQFVDVNVTPDKRTVLLHNEEYVLQSLAEKLDGHFNEQEL 362

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                L    +     +   K      +  L  T E   L      +     S       
Sbjct: 363 MLPKSLPSLPVPHQDSELKVKRRKLVPSQELIGTFEDDHLHNTTTCSEITACSQPMEEES 422



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 14/195 (7%)

Query: 400 EATHYQLGIACAQIHQNYIIS----QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
               ++      Q +  +II     +    L IVDQHA+ E+  FE ++    ST   SQ
Sbjct: 697 SKRDFKEMSIIGQFNLGFIIVARRAENKHDLFIVDQHASDEKYNFENLQ---KSTVFNSQ 753

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKA---ERFGPNA-IAIREIPAILSKKNIPQ 511
            L+ P  ++L   +  L++E+     + G K    E     + I +  +P         +
Sbjct: 754 HLIKPLTVELSVIDELLVLENLPLFKKNGFKIRVNEAQKQGSRIELTGMPTSKQTIFDIE 813

Query: 512 LLRDIIDEIIDSS---TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              +++  + +            +I ++ A  AC  SI  G+ +    M  ++R++ +  
Sbjct: 814 DFYELLSLLKECDGVNKNSIACSKIRSMFAMRACRMSIMIGKPLTRRTMTEVVRKLSELD 873

Query: 569 NSSQCNHGRPTFIKL 583
               C HGRPT   L
Sbjct: 874 KPWNCPHGRPTMRHL 888


>gi|324502411|gb|ADY41063.1| Mismatch repair endonuclease PMS2 [Ascaris suum]
          Length = 888

 Score =  229 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 180/422 (42%), Gaps = 34/422 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  +   +  +I  G+++     A KE+I+N+LDA ++ +E  +   G    ++ DNG G
Sbjct: 8   IAPIPADVCRRICTGQVVTTLGDACKEVIDNALDAGATTIEVRLRSFGSESMEVIDNGCG 67

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + S +     + H TSK++D  DF+++ T GFRGEAL ++ A+S +T+++R        +
Sbjct: 68  IHSSDFEALCKAHATSKLTDLSDFNHLSTIGFRGEALNALCAISSVTVITRHVDEAMATR 127

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIA 178
           +       I S    A  PGT V V  LF T+P R     ++ + +   +  V+  +A++
Sbjct: 128 LIYDHNGCIQSRESCARPPGTTVIVSKLFETLPVRRKELQRTAKKQFCKLLTVVHTLALS 187

Query: 179 YPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--------- 227
              V F  S+         ++    + +  E +  + G     NAV    +         
Sbjct: 188 RTDVRFCVSSILDGRQHQILSTPGGSASIKEVLVSLFGARSDKNAVLDIVQRAPDNEVCS 247

Query: 228 ------------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTAYA 273
                         EI L GY            A++ +++ N R VQ   +       Y 
Sbjct: 248 IYGVSAENSASTFAEIKLSGYVSSCVHGHGRSTADRQFIYFNKRPVQYPKLCRIANEVYQ 307

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
           +    G+Y ++VLL+++ P  +DVNV P K  + +     +   +  S+          T
Sbjct: 308 QY-NQGQYCMLVLLVDVPPESIDVNVAPDKRSVFYEKERELFAVVRASLLATFEPCLGQT 366

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            SV  +  I  FHQDNA ++     +  +  +Q   + +++ ++   +   ++  Y    
Sbjct: 367 QSV--EAPIMRFHQDNAERSIASTSSAVVEASQS--YAEDSVVNYAPIAEDENFPYEPTQ 422

Query: 394 DP 395
             
Sbjct: 423 PF 424



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 21/186 (11%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            + +     Q ++ +II++    L IVDQHA+ E+  FE+++      +I SQ L+ P  
Sbjct: 692 DFAVMDVVGQFNKGFIITRLRGDLFIVDQHASDEKYNFERLQ---KEARIQSQLLINPRP 748

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPN-----AIAIREIPAILSKKNIPQLLRDII 517
           + +   E A + ++ E  ++ G +  RF  N        +  +P + S +     + +++
Sbjct: 749 LKIGAMEEAALRDNIEIFNQNGFEF-RFDDNGESEGRALLTSVPVLNSCQLGTSDIDEML 807

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             + D   T     ++  + A+ AC  S+  G  + + +M +             C HGR
Sbjct: 808 SVLADFPGTMYRPTKLRKLFASRACRKSVMIGMALSTPQMEK------------NCPHGR 855

Query: 578 PTFIKL 583
           PTF +L
Sbjct: 856 PTFRRL 861


>gi|47226069|emb|CAG04443.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 866

 Score =  229 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 168/442 (38%), Gaps = 27/442 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ + +  ++QI +G+++   + A+KEL+ENS+DA ++ ++  +   G    +++DNG 
Sbjct: 3   SIKAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATNIDVRLKDCGADLVEVSDNGK 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          +H TSK+ D  D  ++ TFGFRGEAL S+ A+SHL++++    +  G 
Sbjct: 63  GVEEANFEGLTLKHHTSKLRDFTDLIHVETFGFRGEALSSLCALSHLSVVTCHGSSQVGT 122

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++    +  +    P     GT V ++ LF T+P R   F ++ + E   +  +++   I
Sbjct: 123 KLVFDHKGHLVLRSPHPRQQGTTVSLQQLFCTLPVRHKEFQRNIKKEYAKMIHILQSYCI 182

Query: 178 AYPKVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V  T S       R  +   S + +  + I  + G   + + +   +         
Sbjct: 183 ISTGVRITCSNQNGQGKRSTVLSTSGSQSIRDNIGAIFGPKQLQSLLPFQQACPTENVIE 242

Query: 231 -------------ITLQGYTGI--PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                          + G+         R  +++ + FIN R      ++  +   Y   
Sbjct: 243 EFGLSGADLPKQLFCITGFVSRGDHGAGRSASDRQFYFINNRPCDPVKVMKLVNEVYHMY 302

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
               +YP V L + +   +   ++  AK        ++   ++   +        ++   
Sbjct: 303 -NRHQYPFVALNISVASGKQAASLRVAKRAAGSLFLSVSSLYLSSPVSSECVDVNVTPDK 361

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                            + +  Y   +           + +++   +    P      +P
Sbjct: 362 RQVFLQEEKLLLAALKSSLIHTYEAGVNKISLNFSSLPSAITSASEIGQPAPFRDSRTEP 421

Query: 396 VEESEATHYQLGIACAQIHQNY 417
             E E    ++ +  A     +
Sbjct: 422 SAEPEPGSPRISLNLAGFKAAF 443



 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 7/209 (3%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     S + +  +E     ++      Q +  +II++    + I+DQHA  E+  FE +
Sbjct: 657 SPGENQSAEAELKKEIRKDMFKDMEIIGQFNLGFIIAKLNSDVFIIDQHATDEKYNFEML 716

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIRE 499
           +Q    T +  Q L+ P+ + L      ++ME+ +   + G +     +      + +  
Sbjct: 717 QQH---TVLQGQKLIAPQKLHLTAVSENILMENIDIFRKNGFEFQVDEDAQAMERVKLTS 773

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P   +    P  + ++I  + DS        R+  + A+ AC  S+  G  +   EM +
Sbjct: 774 LPTSKNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSLTEMKK 833

Query: 560 LLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
           LL  M +  +   C HGRPT   L   DI
Sbjct: 834 LLVHMGEMEHPWNCPHGRPTMRHLINLDI 862


>gi|324503073|gb|ADY41341.1| Mismatch repair endonuclease PMS2 [Ascaris suum]
          Length = 900

 Score =  229 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 180/422 (42%), Gaps = 34/422 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  +   +  +I  G+++     A KE+I+N+LDA ++ +E  +   G    ++ DNG G
Sbjct: 8   IAPIPADVCRRICTGQVVTTLGDACKEVIDNALDAGATTIEVRLRSFGSESMEVIDNGCG 67

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           + S +     + H TSK++D  DF+++ T GFRGEAL ++ A+S +T+++R        +
Sbjct: 68  IHSSDFEALCKAHATSKLTDLSDFNHLSTIGFRGEALNALCAISSVTVITRHVDEAMATR 127

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIA 178
           +       I S    A  PGT V V  LF T+P R     ++ + +   +  V+  +A++
Sbjct: 128 LIYDHNGCIQSRESCARPPGTTVIVSKLFETLPVRRKELQRTAKKQFCKLLTVVHTLALS 187

Query: 179 YPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--------- 227
              V F  S+         ++    + +  E +  + G     NAV    +         
Sbjct: 188 RTDVRFCVSSILDGRQHQILSTPGGSASIKEVLVSLFGARSDKNAVLDIVQRAPDNEVCS 247

Query: 228 ------------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTAYA 273
                         EI L GY            A++ +++ N R VQ   +       Y 
Sbjct: 248 IYGVSAENSASTFAEIKLSGYVSSCVHGHGRSTADRQFIYFNKRPVQYPKLCRIANEVYQ 307

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
           +    G+Y ++VLL+++ P  +DVNV P K  + +     +   +  S+          T
Sbjct: 308 QY-NQGQYCMLVLLVDVPPESIDVNVAPDKRSVFYEKERELFAVVRASLLATFEPCLGQT 366

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
            SV  +  I  FHQDNA ++     +  +  +Q   + +++ ++   +   ++  Y    
Sbjct: 367 QSV--EAPIMRFHQDNAERSIASTSSAVVEASQS--YAEDSVVNYAPIAEDENFPYEPTQ 422

Query: 394 DP 395
             
Sbjct: 423 PF 424



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 9/186 (4%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            + +     Q ++ +II++    L IVDQHA+ E+  FE+++      +I SQ L+ P  
Sbjct: 692 DFAVMDVVGQFNKGFIITRLRGDLFIVDQHASDEKYNFERLQ---KEARIQSQLLINPRP 748

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPN-----AIAIREIPAILSKKNIPQLLRDII 517
           + +   E A + ++ E  ++ G +  RF  N        +  +P + S +     + +++
Sbjct: 749 LKIGAMEEAALRDNIEIFNQNGFEF-RFDDNGESEGRALLTSVPVLNSCQLGTSDIDEML 807

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             + D   T     ++  + A+ AC  S+  G  + + +M +++R +    +   C HGR
Sbjct: 808 SVLADFPGTMYRPTKLRKLFASRACRKSVMIGMALSTPQMEKIVRHLGALHHPWNCPHGR 867

Query: 578 PTFIKL 583
           PTF +L
Sbjct: 868 PTFRRL 873


>gi|313234381|emb|CBY24580.1| unnamed protein product [Oikopleura dioica]
          Length = 832

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 91/400 (22%), Positives = 175/400 (43%), Gaps = 14/400 (3%)

Query: 1   MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           MK  I +L EK ++ ++  +++   ++A+KEL+EN+LDA++ ++   +   G    ++ D
Sbjct: 1   MKRGISELDEKTVHSLSTNQVVVSLAVAVKELVENALDAKADKITVTLVDNGVELIEVKD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G++++       RH TSK+   DD   I TFGFRGEAL ++GA+S L + ++   + 
Sbjct: 61  NGSGISADNYDKIAMRHATSKLQEFDDLEAIGTFGFRGEALAALGAISTLKVFTKTADDE 120

Query: 117 TGAQIAISGEKISSVRPVAMNP--GTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIR 173
            G+ +        +   +      GTI+ V +LF  IP R    K + + E       + 
Sbjct: 121 IGSALEFDQYGAITSHMIKAQSSNGTIIRVENLFHRIPVRRTVFKQNAKREAQRALATMM 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV--ELNEKSNEI 231
             A+         +    +           +   +I+ V+G       V  +  +K+   
Sbjct: 181 SYALIANARIVVTTKNGRSMKTEIQTRAGDSLKGKIASVLGGQISKEEVIEDHLQKARIF 240

Query: 232 TLQGYTGIPTF-NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
              G+        R + ++ + F+NGR +   F+   I   + +     +YPVVVL +E+
Sbjct: 241 KFNGFISKTDSGGRTSPDRQFFFVNGRPIDAPFLSRIINQEWRKVTS-KKYPVVVLNIEV 299

Query: 291 DPRQVDVNVHPAKSYIRFRNP---TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
           D   VD+N+ P K  +  +N          ++Q+I  A  +  +S + +   +   + + 
Sbjct: 300 DQSAVDINLAPDKRTVLLQNQKHCQFRFRILLQNIWGATERDVVSMTQLSMDQFSMTLNT 359

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
            ++ +         L N      ++E+       LP  D 
Sbjct: 360 QSSVENSTESSVNGLINDVTFSEVEEDSNERPSKLPRLDF 399



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            S+   +EK           +     +     +++   +     +       Q ++ +II
Sbjct: 596 ESIKAAKEKEERSNTIFQGREFYAKFNDQKKAEDELTRKFSKKDFTKLQVIGQFNRGFII 655

Query: 420 S---QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
               Q  D L ++DQHA  E+  FE++     S KI SQ L+  + + L  GE  ++ + 
Sbjct: 656 VTVGQLKDDLFLIDQHACDEKFNFERLM----SKKIDSQPLVIGKRMTLNPGEDQILQDK 711

Query: 477 DEDLHRLGIKAERFGPN-----AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
                + G       P      +  +  +P +       + + +++  +I+         
Sbjct: 712 VALFKKYGFDFNFSDPECVRDVSYRMTAVPRVGKSTLGEEDVHEMLF-LINEGDFNPKPS 770

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +I  I A  AC  S+  G  +++ +M R+L+ M        C HGRPT   L
Sbjct: 771 KIRRINAMAACRSSVMIGEALKTYQMERMLKNMSTMDQPWNCPHGRPTMRHL 822


>gi|291534088|emb|CBL07201.1| DNA mismatch repair enzyme (predicted ATPase) [Megamonas
           hypermegale ART12/1]
          Length = 169

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 75/167 (44%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L +  +++IAAGE++ERP+  IKEL+ENS+DA + ++E  I  GG SF ++TDN
Sbjct: 1   MTSIHILDDITVDKIAAGEVVERPASVIKELVENSIDAHADKIEVEILAGGTSFIRVTDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G GM +    +A+ RH TSKI   DD  +I T GFRGEALPSI AVS   L++R PQ++ 
Sbjct: 61  GDGMDNPNARLAILRHATSKIKQVDDLMSIDTLGFRGEALPSIAAVSRFNLITRRPQDDL 120

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE 164
           G  I ++G +I  +  +  N GT ++V DLFF +PAR    ++    
Sbjct: 121 GTTIKLTGGRIDEIEDMGCNIGTTIKVEDLFFNVPARKKISQNHYHR 167


>gi|295099687|emb|CBK88776.1| DNA mismatch repair enzyme (predicted ATPase) [Eubacterium
           cylindroides T2-87]
          Length = 370

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 166/371 (44%), Gaps = 28/371 (7%)

Query: 250 FYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFR 309
            Y+ +N R ++   I   I  AY+  +P  R+P+VVL +E D + VDVNVHP K  +R  
Sbjct: 1   MYITLNTRLIRSVPIQKAILDAYSHFLPPNRFPIVVLQIESDAQLVDVNVHPNKWEVRLS 60

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
               +   +  +I+ +++   + T  +  K     F Q+     +  K      +  EK 
Sbjct: 61  KQNDLLELVKNTIRDSLS-NSLQTVQIKPKVKTPIFEQETLNFPYPIKNERKTESIIEKG 119

Query: 370 F-------------------LQENRLSTNDLLPSDDPTYSEDNDPVEESEATH------- 403
           F                   ++E ++     L        +  + ++E E+         
Sbjct: 120 FKKKEEYEKSYDYPIKTNPSIKEEKIEYPTELEVLTKPELQKEESIQEIESVEKAVGYEF 179

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           +       Q+  +YI+ +  +GLVI+DQHAA ER  +E +++  N      Q L+ P  +
Sbjct: 180 FYHLKVIGQLKDSYILCENEEGLVIIDQHAAQERYHYEMLQETLNKPCNNLQPLMLPIQL 239

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           D+     + +   +E     G++ E FG + + +REIP      +    L D++D + + 
Sbjct: 240 DVSSNIMSQVNTINEKTSFFGLEFEPFGNDQLIVREIPLWFQDVHEEAFLYDLLD-LFEK 298

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                +    +++LATMAC+ SIR  R +   EM +++ +++K      C HGRPT I +
Sbjct: 299 DNEIDMSKLRKHVLATMACHSSIRFNRSLTMDEMKQVIEDLKKCKQPYHCPHGRPTIITM 358

Query: 584 KLSDIEKLFGR 594
              D+ K F R
Sbjct: 359 SDHDLRKEFER 369


>gi|303285402|ref|XP_003061991.1| DNA mismatch repair protein, MLH2/PMS1/Pms2 family [Micromonas
           pusilla CCMP1545]
 gi|226456402|gb|EEH53703.1| DNA mismatch repair protein, MLH2/PMS1/Pms2 family [Micromonas
           pusilla CCMP1545]
          Length = 345

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 145/342 (42%), Gaps = 23/342 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR ++   +++I +G+++   + A+KEL+EN+LDA ++ VE  +   G    ++ DNG G
Sbjct: 2   IRAIAPDAVHRICSGQVVLDLASAVKELVENALDAGATNVEVRVREHGVECVEVVDNGAG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++ E       ++ TSKI+  DD +++ +FGFRGEAL S+ A+S L + ++   ++ G++
Sbjct: 62  VSEENFAALTTKYATSKIAAFDDLASLRSFGFRGEALSSLCAMSTLVVTTKTKDDDAGSR 121

Query: 121 IAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
           I      +           GT V +RD+F  +P R     ++ + E   +  +++  A+ 
Sbjct: 122 IEYDRSGMIVRVETVARATGTTVTLRDVFAPLPVRRKEFVRNAKREYAKLLRLLQAYAMI 181

Query: 179 YPKVSFTFSTIKSNRYKMNFQST------------NGNFPERISQVIGEDFINNAVELN- 225
              V    S  ++   +                  + +    ++ V G   +     ++ 
Sbjct: 182 SAGVRIVCSHQRAEGVRGGGNGGGRETVVNTRGGVHADVRSNVACVFGAKAVQGLTPVDA 241

Query: 226 --EKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLG-- 279
                    + G         G A  ++ + ++NGR V        +   Y     +   
Sbjct: 242 VLGADLGCRVVGLVSKAQAECGRAGGDRQFFYVNGRPVDLPKATKALNETYRAQFSVAIT 301

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
           R P  VL   +     DVNV P K  +   +   I   + + 
Sbjct: 302 RAPFAVLDFRLPTNAYDVNVTPDKREVLLHSEKEIMAELRRV 343


>gi|164662239|ref|XP_001732241.1| hypothetical protein MGL_0016 [Malassezia globosa CBS 7966]
 gi|159106144|gb|EDP45027.1| hypothetical protein MGL_0016 [Malassezia globosa CBS 7966]
          Length = 844

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 161/397 (40%), Gaps = 19/397 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  L    + +I+  +++     A+KELIEN++DA+++ +E      G +  +++DNG 
Sbjct: 8   RIAPLDLDDVRRISGAQVLPDMRAAVKELIENAMDAQATNIEVRFKDYGLTLIEVSDNGT 67

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRP-PQNNTG 118
           G++ E      +RHCTSK++  DD +++ T+GFRGEAL S+  V+ + +++    +   G
Sbjct: 68  GISKENFDALGKRHCTSKLTSFDDLTSVETYGFRGEALASLCTVARVKIITATQSEAPMG 127

Query: 119 AQIAISG--EKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
             +         SS +  A   GT V + DL  ++P R     K  + E N    +++  
Sbjct: 128 TVLEFDHLGNLTSSDKRQARQRGTTVILSDLLASLPVRRRELEKHVKREYNKAHTMLQAY 187

Query: 176 AIAYPKVSF----TFSTIKSN---RYKMNFQSTNGNFPERISQVIGED---FINNAVELN 225
           A+    + +      +        +  +   +        ++ + G+     + +     
Sbjct: 188 ALISQNIRWASSIQTTVNGKPPVSQLMLRSATGPNYIQMNMAALFGKKAGAAVQSFDLNV 247

Query: 226 EKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPV 283
                    G    PT  +G +  ++ Y ++NGR      +       Y       +YP 
Sbjct: 248 SLDEPAHFHGVMSKPTMGQGRSSGDRQYFYLNGRPWNCPKLAQICNQVYKMFNST-QYPC 306

Query: 284 VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
           VV  L I     DVNV P K  +       + + I ++++   N      +         
Sbjct: 307 VVANLVIGTHTYDVNVSPDKRTLYVHQEAALFDRIREALEVTFNPSHGVFTVKYPVISSP 366

Query: 344 SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
           +  + +  +  LP  + + + T  +L      L    
Sbjct: 367 AVSEKHDREIELPCKSPNTSETPRELASPSRSLEIEQ 403



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 400 EATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
               +       Q +  +II++      D L I+DQHAA E+  FE + +    TKI SQ
Sbjct: 723 PKKDFYTMRVVGQFNLGFIIARRDTPCMDDLFIIDQHAADEKHNFEDLERH---TKIYSQ 779

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
            L+ P+ I+L   +  +  EH E L + G   +
Sbjct: 780 PLVVPQRIELAPTDELVAHEHREWLSKNGFDID 812


>gi|153811375|ref|ZP_01964043.1| hypothetical protein RUMOBE_01767 [Ruminococcus obeum ATCC 29174]
 gi|149832502|gb|EDM87586.1| hypothetical protein RUMOBE_01767 [Ruminococcus obeum ATCC 29174]
          Length = 626

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 91/318 (28%), Positives = 171/318 (53%), Gaps = 7/318 (2%)

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M +E+IP+A  RH TSKI   +D  +I + GFRGEAL SI AVS + L+++ P + +G++
Sbjct: 1   MEAEQIPLAFLRHATSKIEKVEDLEHIASLGFRGEALSSIAAVSQVELITKTPSSVSGSR 60

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             I G +  S+  +    GT   VR+LF+  PAR  FLKS+  E N I  ++ ++A+++P
Sbjct: 61  YVIEGGQEHSLEELGAPEGTTFLVRNLFYNTPARSKFLKSDMTEANYIHTLMEQLALSHP 120

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           ++SF +   K  +      S N +  + I  V G +     +E++++++ + ++G+ G P
Sbjct: 121 EISFKYIQNKQVKLH---TSGNYSVKDVIYSVYGREIARALLEVSQENSFMKIEGFVGKP 177

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
              RGN +    +INGR V++  I   I  AY   +   ++P V L +E++   +DVNVH
Sbjct: 178 EIARGNRSFENYYINGRYVKNNIITKAIENAYRGFLMQHKFPFVSLRMEMEGNDLDVNVH 237

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           PAK  +RF     + + +  +++ A+ ++ +     +    +    ++   +  +P+   
Sbjct: 238 PAKREVRFAREQEVYDAVYDTVRAALTRREMIPKVSVDSSSVKEDKEEKVTRAAVPEPFE 297

Query: 361 SLTNTQEKLFLQENRLST 378
                +E+L+  +  + +
Sbjct: 298 Q--KRREELYGAQKPVYS 313



 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/286 (22%), Positives = 118/286 (41%), Gaps = 3/286 (1%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           +    ++    +       +     ++ + +K+ +   Q    K+        +  T+ +
Sbjct: 342 QKLDEVKKLTERQTVPESFQNSSKKTNTVPEKVDTQVKQKIVQKSVQDYEQDYVQKTEAE 401

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
               +  +S      +         + +   E+          QI   Y + Q  D   I
Sbjct: 402 ELKIQEAVSRETEKQTPPQQLELFEEKLLAPESRSRIDL--IGQIFDTYWLVQFEDNFYI 459

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +DQHAAHE++ +E+M + F    I SQ L  P I+ L   E  ++  +     + G + E
Sbjct: 460 IDQHAAHEKVYYERMVKQFREHSIDSQYLNPPLIVALSMQEEEVLKANMNYFEQFGFEIE 519

Query: 489 RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
            FG     I  +P+ L      +L  +++D +  +++  TL D     LATMAC  +++ 
Sbjct: 520 NFGGREYRISAVPSNLYGLTEEELFLEMLDNLASNNSKDTL-DIFAARLATMACKAAVKG 578

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              M   E  +L+ E+    N   C HGRPT I +  +++EK F R
Sbjct: 579 NHAMSQQEAEKLIDELLTLENPYHCPHGRPTIIAMTRTELEKKFKR 624


>gi|255933019|ref|XP_002557980.1| Pc12g11630 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582599|emb|CAP80790.1| Pc12g11630 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 846

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 162/397 (40%), Gaps = 31/397 (7%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG G++ E    
Sbjct: 16  VHQIQSGQVIVDLCSVAKELVENSLDAGATTIEVRFKNNGLDLIEVQDNGSGISPENYEN 75

Query: 71  AVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISGE- 126
              +H TSK+S  DD S++HTFGFRGEA+ S+ A++   +++   +      ++      
Sbjct: 76  VALKHYTSKLSSYDDLSSLHTFGFRGEAISSLCALADFHIVTAQEKQVPRANRLDFEQSG 135

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFT 185
           K+   + VA   GT   V  +F  +P R     K+ + E   + +++   A     V F+
Sbjct: 136 KLRKTQIVAGQKGTTASVEGIFKRLPVRRRELEKNIKREYGKVLNLLHAYACISTGVRFS 195

Query: 186 FSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVE----------------LNEK 227
                     +   STNGN    E I+ V G   ++  +                  +++
Sbjct: 196 VRNTVGKTRNVVVFSTNGNKTTKENIANVYGAKTLSALISLDLDLEFEPSAATKRVGDDQ 255

Query: 228 SNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
            ++I ++G+   P F   R   ++   F+N R      I       Y     + +   + 
Sbjct: 256 PSKIQVRGHISRPVFGEGRQTPDRQMFFVNSRPCGLPQIQKAFNEVYKSF-NVSQSAFIF 314

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
              ++D    DVNV P K  I   +   +   +    + ++ +        + +  + S 
Sbjct: 315 ADFQMDTGAYDVNVSPDKRQILLHDAGAMIESL----KGSLAQLFEDADQTVPQSSVKSK 370

Query: 346 H-QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
                 P   LP + T+   ++       ++  T + 
Sbjct: 371 PLPKQQPLASLPGFVTARELSESGGLRSPSQDRTKES 407



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 111/304 (36%), Gaps = 34/304 (11%)

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT--------- 360
           +P  I N +  +  + + +              +S  +                      
Sbjct: 511 DPEEIPNIVQNAFDRMLQRLIHEAEETAMLPQENSAKRAKKMSKGAAHRDATIQLVGTVD 570

Query: 361 -SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE----ATHYQLGIACAQIHQ 415
            S++  Q +    +  L        ++ T   +    ++         +       Q + 
Sbjct: 571 GSISRLQSQFITLQKTLQAGTKKTKEEATDLGEKTAEDKLSLTVSKNDFAQMRIIGQFNL 630

Query: 416 NYI----ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
            +I      +  D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  
Sbjct: 631 GFIIAVRPGEDHDELFIIDQHASDEKFNFERLQ---AETVVQNQRLVRPQRLDLTAVEEE 687

Query: 472 LIMEHDEDLHRLGIKA-------ERFGPNAIAIREIP----AILSKKNIPQLLRDIIDEI 520
           +++E+   L + G          E  G     +  +P     +   +++ +L+  + + I
Sbjct: 688 VVLENRVALEKNGFLVTVDESGDEPIGRRCQLV-SLPLSKEVVFGVRDLEELIVLLSESI 746

Query: 521 IDSST-TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
             S+  +     ++  + A  AC  SI  G+ + S +M R+++ M        C HGRPT
Sbjct: 747 STSNELSVPRPSKVRKMFAMRACRSSIMIGKTLTSRQMERVVQNMGTIDKPWNCPHGRPT 806

Query: 580 FIKL 583
              L
Sbjct: 807 MRHL 810


>gi|198429273|ref|XP_002130522.1| PREDICTED: similar to Zp3a.2 protein [Ciona intestinalis]
          Length = 936

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 154/337 (45%), Gaps = 16/337 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
            KLS +    I++ ++    S  +KEL EN+LDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   HKLSSETSKLISSAQVATSVSNVVKELTENALDAGATSIQVKLVDFGLEKIEVRDNGCGI 61

Query: 64  TSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            +EE+  A QRH TSK+    D  ++ T+GFRGEAL S   VS + + ++   +      
Sbjct: 62  KAEEMKYAAQRHYTSKLRTDKDLLSLLTYGFRGEALSSACEVSDVCITTKTRYDAYSTAY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  +  IS  RP  +  GT V + ++F  +P R ++    K  + +  L  D++   A+
Sbjct: 122 TLDSKGSISLSRPSHLGQGTTVVISNIFKNLPVRKSYYANSKKRKEQLKLTEDMLIAYAL 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--EITLQG 235
           A P V  + S  K+  ++   +       E +  V+G     N  E   ++    + +  
Sbjct: 182 ANPSVHLSLSHNKTVIWQ---KPACKTLSEAVVNVLGSAVSQNLEEKKVQNCEKTVAIHA 238

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET-----IPLGRYPVVVLLLEI 290
           +       R   ++ YV IN R +Q+K I  TI+    +           +P  +L + +
Sbjct: 239 FVPKKVILRRTCDRCYVLINKRPIQEKQIDKTIKKMLGKGDSEKENNQSGWPTAILSITL 298

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
               VDVNV+P K+ +       +   +   ++  +N
Sbjct: 299 PTDTVDVNVNPNKTQVMLTLKEEVLKLVENLLEPNLN 335


>gi|170574153|ref|XP_001892689.1| DNA mismatch repair protein MutL containing protein [Brugia malayi]
 gi|158601598|gb|EDP38475.1| DNA mismatch repair protein MutL containing protein [Brugia malayi]
          Length = 678

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 90/415 (21%), Positives = 169/415 (40%), Gaps = 29/415 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +   +  +I  G+++   + A KELI+NSLDA++  +E  +   G    ++ D+G 
Sbjct: 12  KIHAIPIDVCRKICTGQVVITLAGACKELIDNSLDAQAKTIEVRVRKMGFERMEVIDDGI 71

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ S       + H TSK+++  DF+ + TFGFRGEAL S+ AVS L++ +R        
Sbjct: 72  GIHSLNFDALCKPHSTSKLTNFADFNQLTTFGFRGEALSSLCAVSSLSITTRHADEIMAT 131

Query: 120 QIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++    +  I S    A   GT + + +LF T+P R     +S +     + +V++  A+
Sbjct: 132 KLEFDHDGFIKSREKCARPVGTTISINNLFETLPVRRKEFERSVKKAFTKLLNVVQSFAL 191

Query: 178 AYPKVSF--TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA-------------- 221
           +   V F             +     N    + I  + G  F                  
Sbjct: 192 SRTDVRFVVNSLMDGKQYQALVTPGGNAPIKDIIVSLFGARFEKGTILDIIQQEPDESIC 251

Query: 222 ----VELNEKSNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTAYAET 275
               +    K ++I + GY       +    A++ +++ N R V    +       Y + 
Sbjct: 252 SLYGISDQSKFDDIKITGYISSCVHGQGRSTADRQFIYFNKRPVDYSKLCRIANEVYQQY 311

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK--GIST 333
              G+Y +++L +++ P  +DVNV P K  + F     +   +  S+          ++T
Sbjct: 312 -NRGQYCMLILFIDVPPESIDVNVAPDKRSVFFEREKELFALLRASLLATFAPHLGHVNT 370

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
           S+  +   +                +   T+  E  F  +N  S  D+  + D +
Sbjct: 371 SNRSTNGCMDDSFIQLTQSNDNDDSSNICTSDFESSFELKNTDSLTDVTFARDKS 425


>gi|311302918|gb|ADP89033.1| PMS1-like protein [Trichomonas vaginalis]
          Length = 539

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 122/561 (21%), Positives = 232/561 (41%), Gaps = 29/561 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L +     + A E I  P+ A++E+IEN  DA  + +   +  GG     ++DNG G+
Sbjct: 2   KTLGKHDSTMVRATETISSPAHALREMIENVFDAGCTLLTIRVGNGGLDHISVSDNGPGI 61

Query: 64  TSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + E + M      TSK    D S     G RG AL +I  +S+LT+ +    +N G ++ 
Sbjct: 62  SEEGLSMICDEGVTSKEFGKDVS-----GGRGRALEAISYLSYLTIDTCTDNSNNGWRLQ 116

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPK 181
                   +  +    GT V  + LF+  P R ++  + +  + + I ++ +  AIA   
Sbjct: 117 FDENHTRKMEKITRPKGTTVTAQTLFYGQPVRRHYFLEHKSQQVSDIIEITQSFAIAS-S 175

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            + T +       +++    +          I + F +  V L++  +E +L+ YT  PT
Sbjct: 176 ANMTVTLDNKLLIQVSTPKRDSRISTVFGSDIMKGFEHGEVSLDKWHSEASLEYYTATPT 235

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVH 300
            N          +N R      +   I+  +   +  G + P  V  +       D   +
Sbjct: 236 ANSNKK--ILFIVNNRPCVCSGLYRAIKNEFR--LCAGPKLPSGVFFITAPRNTFDFIPN 291

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
                I F +       + ++  + ++     +S  L+   + S      P   LP+  T
Sbjct: 292 SPLISISFEHEN----ILQKTFCEILSSVWKKSSEKLTFNNVISEE----PIRSLPQM-T 342

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQNY 417
            L NT+        + +T+D+L       +   D     +  E   ++      Q +Q++
Sbjct: 343 RLKNTEPLGIECHCQATTDDILERFKNCQNYVPDYGLSYDAIETKAFKDMEIIGQWNQSF 402

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II++    +  +DQHAA E   FEK+R+      I SQ L++P +I     E +   E  
Sbjct: 403 IITKYGCDIYAIDQHAAMEAQNFEKLRKKC---SIQSQRLISPIVISATPQEISAAEECK 459

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           +     G   +    N+I +++IP+I +       L ++I  + +S  +  +  +    +
Sbjct: 460 QKCKEFGYDYD-ISDNSILVKKIPSITTVATGSDDLLELITMLHESPASQPMTRKARIWM 518

Query: 538 ATMACYGSIRSGRKMQSIEMN 558
           A  AC+ S+R G  M + +M 
Sbjct: 519 AYRACHSSVRVGDTMNNSQMK 539


>gi|311302916|gb|ADP89032.1| PMS1-like protein [Trichomonas vaginalis]
 gi|311302920|gb|ADP89034.1| PMS1-like protein [Trichomonas vaginalis]
          Length = 539

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 120/560 (21%), Positives = 229/560 (40%), Gaps = 27/560 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L +     + A E I  P+ A++E+IEN  DA  + +   +  GG     ++DNG G+
Sbjct: 2   KTLGKHDSTMVRATETISSPAHALREMIENVFDAGCTLLTIRVGNGGLDHISVSDNGPGI 61

Query: 64  TSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + E + M      TSK    D S     G RG AL +I  +S+LT+ +    +N G ++ 
Sbjct: 62  SEEGLSMICDEGVTSKEFGKDVS-----GGRGRALEAISYLSYLTIDTCTDNSNNGWRLQ 116

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPK 181
                   +  +    GT V  + LF+  P R ++  + +  + + I ++ +  AIA   
Sbjct: 117 FDENHTRKMEKITRPKGTTVTAQTLFYGQPVRRHYFLEHKSQQVSDIIEITQSFAIAS-S 175

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            + T +       +++    +          I + F +  V L++  +E +L+ YT  PT
Sbjct: 176 ANMTVTLDNKLLIQVSTPKRDSRISTVFGSDIMKGFEHGEVSLDKWHSEASLEYYTATPT 235

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            +          +N R      +   I+  +       + P  V  +       D   + 
Sbjct: 236 AHSNKK--ILFIVNNRPCVCSGLYRAIKNEFR-LCAGPKLPSGVFFITAPRNTFDFIPNS 292

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
               I F +       + ++  + ++     +S  L+   + S      P   LP+  T 
Sbjct: 293 PLISISFEHEN----ILQKTFCEILSSVWKKSSEKLTFNNVISEE----PIRSLPQM-TR 343

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQNYI 418
           L NT+        + +T+D+L       +   D     +  E   ++      Q +Q++I
Sbjct: 344 LKNTEPLGIECHCQATTDDILERFKNCQNYVPDYGLSYDAIETKAFKDMEIIGQWNQSFI 403

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I++    +  +DQHAA E   FEK+R+      I SQ L++P +I     E +   E  +
Sbjct: 404 ITKYGCDIYAIDQHAAMEAQNFEKLRKKC---SIQSQRLISPIVISATPQEISAAEECKQ 460

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
                G   +    N+I +++IP+I +       L ++I  + +S  +  +  +    +A
Sbjct: 461 KCKEFGYDYD-ISDNSILVKKIPSITTVATGSDDLLELITMLHESPASQPMTRKARIWMA 519

Query: 539 TMACYGSIRSGRKMQSIEMN 558
             AC+ S+R G  M   +M 
Sbjct: 520 YRACHSSVRVGDTMNHSQMK 539


>gi|311302914|gb|ADP89031.1| PMS1-like protein [Trichomonas vaginalis]
          Length = 539

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 121/561 (21%), Positives = 231/561 (41%), Gaps = 29/561 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L +     + A E I  P+ A++E+IEN  DA  + +   +  GG     ++DNG G+
Sbjct: 2   KTLGKHDSTMVRATETISSPAHALREMIENVFDAGCTLLTIRVGNGGLDHISVSDNGPGI 61

Query: 64  TSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + E + M      TSK    D S     G RG AL +I  +S+LT+ +    +N G ++ 
Sbjct: 62  SEEGLSMICDEGVTSKEFGKDVS-----GGRGRALEAISYLSYLTIDTCTDNSNNGWRLQ 116

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPK 181
                   +  +    GT V  + LF+  P R ++  + +  + + I ++ +  AIA   
Sbjct: 117 FDENHTRKMEKITRPKGTTVTAQTLFYGQPVRRHYFLEHKSQQVSDIIEITQSFAIAS-S 175

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            + T +       +++    +          I + F +  V L++   E +L+ YT  PT
Sbjct: 176 ANMTVTLDNKLLIQVSTPKRDSRISTVFGSDIMKGFEHGEVSLDKWHPEASLEYYTATPT 235

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVH 300
            N          +N R      +   I+  +   +  G + P  V  +       D   +
Sbjct: 236 ANSNKK--ILFIVNNRPCVCSGLYRAIKNEFR--LCAGPKLPSGVFFITAPRNTFDFIPN 291

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
                I F +       + ++  + ++     +S  L+   + S      P   LP+  T
Sbjct: 292 SPLISISFEHEN----ILQKTFCEILSSVWKKSSEKLTFNNVISEE----PIRSLPQM-T 342

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQNY 417
            L NT+        + +T+D+L       +   D     +  E   ++      Q +Q++
Sbjct: 343 RLKNTEPLGIECHCQATTDDILERFKNCQNYVPDYGLSYDAIETKAFKDMEIIGQWNQSF 402

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II++    +  +DQHAA E   FEK+R+      I SQ L++P +I     E +   +  
Sbjct: 403 IITKYGCDIYAIDQHAAMEAQNFEKLRKKC---SIQSQRLISPIVISATPQEISAAEDCK 459

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           +     G   +    N+I +++IP+I +       L ++I  + +S  +  +  +    +
Sbjct: 460 QKCKEFGYDYD-ISDNSILVKKIPSITTVATGSDDLLELITMLHESPASQPMTRKARIWM 518

Query: 538 ATMACYGSIRSGRKMQSIEMN 558
           A  AC+ S+R G  M + +M 
Sbjct: 519 AYRACHSSVRVGDTMNNSQMK 539


>gi|322707643|gb|EFY99221.1| putative DNA mismatch repair protein PMS1 [Metarhizium anisopliae
           ARSEF 23]
          Length = 1106

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/438 (21%), Positives = 176/438 (40%), Gaps = 29/438 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +G++I      +KEL+ENS+DA ++ ++      G    ++ DNG G+     P    +H
Sbjct: 90  SGQVIVDLCSVVKELVENSIDAGATIIDVRFKNQGLDLIEVQDNGSGICPANYPSIALKH 149

Query: 76  CTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISGE-KISSV 131
            TSK+S   D +++ TFGFRGEAL S+ A+S +T+ +        G ++      K++S 
Sbjct: 150 HTSKLSSYSDIASLRTFGFRGEALASLCALSSVTITTCLESEVPRGCKLGFEISGKLAST 209

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
             VA   GT V V  LF  +P R     ++ + E + +  ++ + A     + F+ S   
Sbjct: 210 TMVASQRGTTVSVEKLFHNLPVRRRELERNIKREWHKVIALLNQYACVQTNLKFSVSQQP 269

Query: 191 SNRYKMNFQSTNGN--FPERISQVIGEDFINN-----------------AVELNEKSNEI 231
           +   ++   ST  N    E I  + G   ++                   +  +++S ++
Sbjct: 270 TKGKRIILFSTKSNPTTRENIINIFGSKAMSTLVSLDLLLEMHPSNVGPDLRTDQESKQV 329

Query: 232 TLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            + G+   P     R   ++   F+NGR         T    Y     + + P +   ++
Sbjct: 330 RILGHVSRPVHGDGRQAPDRQMFFVNGRPCGLPQFAKTFNEVYKAY-NISQSPFIFADVQ 388

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTSSVLSKKMISSFHQ 347
           +D +  DVNV P K  I   + +++ + +  S+ +  +     + T+ VL  +  S    
Sbjct: 389 LDTKMYDVNVSPDKRSILLHDQSLLLDRLRSSLIRLFDSHDYQLPTTQVLITETPSCPAS 448

Query: 348 DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
            +A +  +P    +   T E      +    +   PS        +  +   E      G
Sbjct: 449 VDADRRSIPLIRENPPYTSESELSATSHSEPDGGSPSSTGFVKGKSSQLAMREEKIASGG 508

Query: 408 IACAQIHQNYIISQTTDG 425
              A+I    +       
Sbjct: 509 REGAKIAPESLTKWFGCD 526



 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 12/178 (6%)

Query: 415  QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
                 +   D L I+DQHA+ E+  FE+++    +T I SQ L+ P+ + L   E  +++
Sbjct: 880  HTCHEADDADELFIIDQHASDEKFNFERLQV---NTVIQSQRLVYPKALQLTALEEEIVL 936

Query: 475  EHDEDLHRLGIKA--ERFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTY- 527
             +   L   G K   +  G + +     +  +P           L ++I  + + S+   
Sbjct: 937  GNLPALEANGFKIQVDSTGGSPVGARCQLLALPLSREVTFTLNDLEELITLLAEESSGSR 996

Query: 528  --TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                  R+  + A  AC  SI  G+ + + +M  L+R M +      C HGRPT   L
Sbjct: 997  HIPRPSRVRKMFAMRACRSSIMIGKPLTTSQMYSLVRHMGELDKPWNCPHGRPTMRHL 1054


>gi|241952218|ref|XP_002418831.1| DNA mismatch repair protein, putative; postmeiotic segregation
           protein, putative [Candida dubliniensis CD36]
 gi|223642170|emb|CAX44137.1| DNA mismatch repair protein, putative [Candida dubliniensis CD36]
          Length = 911

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 98/422 (23%), Positives = 191/422 (45%), Gaps = 21/422 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +++  I++I + ++I      IKELIENS+DA +++++ +    G    QI DNG 
Sbjct: 7   SIKTINKFDISKITSSQVIIDLKAIIKELIENSIDAHANKIDIIFHNYGVDSIQIQDNGN 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           G+ S +      R+ TSKI   +D   + T GFRGEAL SI ++S  LT+ +   ++   
Sbjct: 67  GINSTDFETICLRNHTSKIENFEDLDQLTTLGFRGEALNSICSLSNKLTITT-TKEDLYP 125

Query: 119 AQIAISGEKISSVRPVAM-------NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITD 170
               ++ + +  +    +         GT V +  LF  +P R  NF+K+ + E +   +
Sbjct: 126 KCHVLNYDNMGQLVDQRIKVGGLNYKSGTSVMIEQLFKNLPVRLKNFIKNSKKEFSKAIN 185

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNEK 227
            +    I YP++ FT   + +N  K+   +  G+     + +  V G +   N + L+ +
Sbjct: 186 FVINYLIIYPQIKFTIYNVVNNHKKLILATKGGDNTTIIDNLISVYGNNNNKNLLSLDLE 245

Query: 228 SN-EITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
              +I L GY    +F   R   ++ ++++N R +  K +   I   Y     + +YP+ 
Sbjct: 246 ITEDIKLVGYISSYSFGLGRSAPDRQFLYLNKRPIIFKKLYKLINEIYKSYNHV-QYPIY 304

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           ++ + I+P  VD+N+ P K+ +  ++ T I   I   + +    +            + +
Sbjct: 305 IIDIVINPNLVDINLLPDKTNVLIKDETTILQIIETKLSEFFELQDNMIIPKNESYQVKN 364

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
              D A ++     A  + +  +  +  +N  +  D L  D    + ++D  EE      
Sbjct: 365 SESDRAKRSDNKNIA--VHDDIDTSYQIKNDTTRLDNLSGDKANLNGNDDKQEEPNNQDE 422

Query: 405 QL 406
           Q 
Sbjct: 423 QC 424



 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 23/311 (7%)

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
                  N +P K  +       +   I    +          S  L + M+ + +    
Sbjct: 570 HQDNHGKNFYPVKHKLDDTEEENV-TVISIGDETFQQYDERRPSKRLKRDMLRNIYNKKI 628

Query: 351 PKTHLPKYATSLTN------TQEKLFLQE--NRLSTNDLLPSDDPTYSEDNDPVE-ESEA 401
             +     ++   N        E L ++E  N + TN +         +  +    +   
Sbjct: 629 VNSSQEIISSINENLKTFQEQSESLDVKEEPNEIKTNAIDNLQPNKQQQYEEVESYQINK 688

Query: 402 THYQLGIACAQIHQNYII--SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
             +       Q +  +II      + L I+DQHA+ E+  FEK+  +F   +I  Q+L+ 
Sbjct: 689 QDFLKMKLIGQFNLGFIIVDFDNNNNLFIIDQHASDEKYNFEKLMTNF---RINYQSLIK 745

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFG---PNAIAIREIPA----ILSKKNIPQL 512
           P  ++L   +  L+M++ E  H  G K +       N I +  +P     I +  +  +L
Sbjct: 746 PIKLELSVIDQMLVMDNQEIFHNNGFKLKIKSTLVDNEIFLETLPVYQNIIFNLDDFYEL 805

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L +++++  D         +I+ ILA  AC  SI  G  +   +M  ++  +        
Sbjct: 806 L-NLVNQQQDQVNPNLKCSKIKQILAMKACRSSIMIGTFLSKSKMKEIISNLSTLDKPWN 864

Query: 573 CNHGRPTFIKL 583
           C HGRPT   L
Sbjct: 865 CPHGRPTMRHL 875


>gi|255725688|ref|XP_002547773.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240135664|gb|EER35218.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 789

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 163/365 (44%), Gaps = 19/365 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ + +  I+++ + ++I      +KELIENS+DA + +++      G    Q+ DNG 
Sbjct: 5   SIQSIGQADISKLTSSQVIIDLKSILKELIENSIDANADKIDITFTNYGIDSIQVQDNGK 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           G+   +      R  TSKI   +D +N+ T GFRGEAL SI ++S  LT+ +        
Sbjct: 65  GIQQGDFETICLRGHTSKIVNFEDLNNLSTLGFRGEALNSICSLSNKLTITT-TNGEFYP 123

Query: 119 AQIAISGEKISSVRPVAM-------NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITD 170
               +  +    +              G  V +  LF+ +P R  NF+K+ + E +   +
Sbjct: 124 KCHLLHYDNEGKLIKHDRKVGGMNYKSGCSVLIDKLFYNLPVRLKNFIKTSKREFHKAIN 183

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNEK 227
            +    I +P++ FT   I + +  +   S  G+     + +  V G +   N + L  +
Sbjct: 184 FVINYLIIFPEIKFTVYNIVNGKKNLILSSKGGDKTTIIDNLISVFGNNNNKNLLPLEIE 243

Query: 228 S-NEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
              +I L G+    +F   R + ++ ++++N R +  K +   I   Y     + +YP  
Sbjct: 244 ISEDINLSGFISSYSFGLGRSSPDRQFLYVNKRPIVFKKLSKIINEIYKSFNHV-QYPTF 302

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           ++ L I+P  +DVN+ P K+ I   N + +   I + + +  + +            + S
Sbjct: 303 IINLVINPNLIDVNLIPDKTNILIHNESEVLELIREKLLEFYDTQDNVIIPKNENSQLKS 362

Query: 345 FHQDN 349
           F  DN
Sbjct: 363 FVSDN 367



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 8/189 (4%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
               +       Q +  +I+      L I+DQHA+ E+  FEK+  +F    I  Q L+ 
Sbjct: 589 SKQDFLDMKLIGQFNLGFILVNHNSNLFIIDQHASDEKFNFEKLMSNFQ---IKHQPLMM 645

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA----IAIREIPAILSKKNIPQLLRD 515
           P  +DL   +  L++++ E  +  G K      N+    I++  +P   +         +
Sbjct: 646 PINLDLNIIDEMLVLDNQEIFNNNGFKLTINDNNSAGKRISLVSLPVYKNSMFTVDDFHE 705

Query: 516 IIDEIIDSSTTYTLQ-DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +I+ I +      L+  +I  ILA  AC  SI  G  ++  +MN +++ +        C 
Sbjct: 706 LINLINEQPNNKNLKISKIRKILAMKACRSSIMIGSSLKKSKMNEIVKNLSTLDKPWNCP 765

Query: 575 HGRPTFIKL 583
           HGRPT   L
Sbjct: 766 HGRPTMRHL 774


>gi|50294039|ref|XP_449431.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528745|emb|CAG62407.1| unnamed protein product [Candida glabrata]
          Length = 736

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 123/721 (17%), Positives = 227/721 (31%), Gaps = 145/721 (20%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVET--VIAGGGKSFFQITDNG 60
           I  L ++    + A   I      ++EL++N++DA +S V+    I    K+   + D+G
Sbjct: 2   IHVLPKETWQVLRADTQITGIDSVLRELLQNAVDAGASTVDVSFSIK---KNMCMVADDG 58

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            GMT +++ +  + H TSKI +  D         T GFRGEA+ +I  +S LT+M++   
Sbjct: 59  CGMTRKDLDLLGRPHITSKIRNFRDLERFGNGNGTMGFRGEAIFAISQISELTMMTKHSD 118

Query: 115 NNTGA--------------------QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR 154
                                                   A + GT+V V DLF  IP R
Sbjct: 119 FRAHYWRDFPMTSVLTTEEDIRSSLHAQYLSTTPFYEDIWARSSGTVVIVSDLFKYIPVR 178

Query: 155 LNFLKS--EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV 212
              L++      T+ I +   ++ +  P +     T   N     F +            
Sbjct: 179 KKTLENVPVATITDSIREDFYQILVRNPNLKLNIFTFDDNYKNFEFLNHVKEQYLHSLGS 238

Query: 213 IGEDFINNAVELNE-----------KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQD 261
           I        V  +               E  + G          + +  +VF+NGR   +
Sbjct: 239 IPIHNAFIRVYGHVVPDPSIKIVKLSFREYNITGLISNCQV--RSKSFQFVFVNGRRYSN 296

Query: 262 KFILSTIRTAYAETI---------------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
              L  I   + ++                    YP+ V+ ++      D+    +K  I
Sbjct: 297 SEFLGKINRIFDQSTFATNAVEKDTRLGKRSARSYPLFVIKIDGPAHVQDLIQSTSKDII 356

Query: 307 RFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------------------MISSFHQD 348
              +  +I   I++ I   +  +G  T                         M + FH+D
Sbjct: 357 HLSDGKLINILILKVIYSFLKDQGFLTEIPTQLNDDNCDRIDQLGTLEEPIFMDNDFHRD 416

Query: 349 --------NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS-DDPTYSEDNDPVEES 399
                    A    +     S    +++L     R S      S ++   S  +      
Sbjct: 417 FVIRNNVKMAKYNKVSHANISHPWKRQRLDYPVRRTSKWWKERSVNELHQSRISTKFAPI 476

Query: 400 EATHYQLGIACAQIHQNYIIS-------------------------QTTDGLVIVDQHAA 434
           +       +        ++                           +    L I+DQHA 
Sbjct: 477 KKWAAYEKLHVFDYKDRFLSRSDDLKEVDVVNQVDQKFILLRQKSARGNFELYIIDQHAC 536

Query: 435 HERLIFEKMRQDFNSTKIT---SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
            ER+  E   + +    +    +   +    I++   E     ++  +  + GI      
Sbjct: 537 DERIRLESFLKQYICDIMANALAVQKIFQSRIEIAISEKENFEQYRHEFSKWGIYYNVVH 596

Query: 492 PN---AIAIREIPAILSK--KNIPQLLRDIIDEIID------------------------ 522
            N   ++ I  +P +L+   K   +L   ++  I D                        
Sbjct: 597 SNNNYSLDIFALPDMLADKIKANEELKDMMLQHIFDLKDGSRSRIKTISSLDAQFLSGGW 656

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            S    +   I     + AC  +I  G  +   E   L+R +      + C HGRP+ ++
Sbjct: 657 WSNVNKIPSFIRRFFDSKACRSAIMFGDTLNLQECRDLVRRLNGCIQPNFCAHGRPSVVE 716

Query: 583 L 583
           L
Sbjct: 717 L 717


>gi|260946133|ref|XP_002617364.1| hypothetical protein CLUG_02808 [Clavispora lusitaniae ATCC 42720]
 gi|238849218|gb|EEQ38682.1| hypothetical protein CLUG_02808 [Clavispora lusitaniae ATCC 42720]
          Length = 878

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 165/386 (42%), Gaps = 33/386 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  +    + +I +G++I      +KEL+ENS+DAES +++ V    G +  +++DNG
Sbjct: 1   MGIGSIQTSDVAKITSGQVIIELLSVVKELVENSIDAESDKIDVVFNNNGITSVEVSDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NT 117
            G+  E+      +H TSK++  +D S + T GFRGEA+ S+  V+ + +++    +   
Sbjct: 61  TGIEKEDFESLCLKHHTSKLTTFEDLSRVSTLGFRGEAMSSLCNVAKVKIVTCSKSSYPK 120

Query: 118 GAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRR 174
             ++        ++    V    GT V V  LF  +P R  NF+K  + E +     +  
Sbjct: 121 ATELEYDSMGKLVAQKSKVTGKKGTTVLVSGLFQDMPVRQKNFIKHAKREYSKCLSTLMS 180

Query: 175 MAIAYPKVSFTFSTI----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
             +AYP + F    I          +  Q  + +  + ++ + G +     V ++  +++
Sbjct: 181 YLLAYPHIRFAVYNINATSGKKTLTLGSQGGSSSVTDVLTSIFGSNGAYGLVSIDVAASD 240

Query: 231 -----------------ITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILSTIRTA 271
                            + + G+    +F  G    ++ Y+ IN R V  K     I   
Sbjct: 241 IDVRFKLSANTVPVSLAMKVCGWISDYSFGMGRGGTDRQYLCINRRPVNHKRFAKVINEV 300

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y       + PV VL +EID   VDVNV P K  +   +  I+   + + +      +  
Sbjct: 301 YRTFNAT-QSPVYVLNIEIDSTFVDVNVTPDKRMVMINSEEILCEVLREELTYFYRDRH- 358

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPK 357
             +S+    + S   Q     + +P+
Sbjct: 359 --NSLPKNNLTSQIAQSQNMCSQIPQ 382



 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 86/201 (42%), Gaps = 18/201 (8%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           +     +       Q +  +++    + L IVDQHA+ E   +E++     S  + +Q L
Sbjct: 667 QIHKDDFARMSVVGQFNLGFVVVVHDNRLFIVDQHASDEIFNYERLM---QSLVLRAQPL 723

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLL 513
           + P +++L   +  +++E+ E+L R G       +      + +  +P   +       L
Sbjct: 724 VIPRLLELSPVDEMVLLENVENLRRNGFVVQEDADAVPGRRVKLMAVPVSKNVVFDDGDL 783

Query: 514 RDIIDEIIDSSTTYTLQ-----------DRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            +++  + ++    ++             +++ ++A+ AC  SI  G+ +    M +++R
Sbjct: 784 HELMHRLHENGFASSMSTQERPRLVVRCSKVDKMIASRACRRSIMIGQSLSKNTMAKVVR 843

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            + +      C HGRPT   L
Sbjct: 844 HLSRLEKPWNCPHGRPTMRHL 864


>gi|238883807|gb|EEQ47445.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 910

 Score =  226 bits (576), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 134/630 (21%), Positives = 254/630 (40%), Gaps = 77/630 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +S+  I++I + ++I      IKELIENS+DA + +++ +    G +  QI DNG 
Sbjct: 7   SIKTISKFDISKITSSQVIIDLKAIIKELIENSIDAHADKIDIIFHNYGVNSIQIQDNGN 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           G+   +      R+ TSKI   +D   + T GFRGEAL SI ++S  LT+ +   ++   
Sbjct: 67  GINVTDFETICLRNHTSKIENFEDLDQLTTLGFRGEALNSICSLSNKLTITT-TKEDLYP 125

Query: 119 AQIAISGEKISSVRPVAM-------NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITD 170
               ++ + +  +    +         GT + +  LF  +P R  NF+K+ + E +   +
Sbjct: 126 KCHVLNYDNMGQLVDQRIKVGGLNYKSGTSIMIEQLFKNLPVRLKNFVKNSKKEFSKAIN 185

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNEK 227
            +    I YP++ FT   + +N  K+   +  G+     + +  + G +   N + L+ +
Sbjct: 186 FVINYLIIYPQIKFTIYNVLNNHKKLILATKGGDNTTIIDNLISIYGNNNNKNLLSLDLE 245

Query: 228 SN-EITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
              +I L GY    +F   R   ++ ++++N R +  K +   I   Y       +YP+ 
Sbjct: 246 ITEDIKLVGYISSYSFGLGRSAPDRQFLYLNKRPIVFKKLYKLINEIYKSY-NHVQYPIY 304

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           ++ + I+P  VD+N+ P K+ +  ++ T I   I   + +    +            + +
Sbjct: 305 IIDIVINPNLVDINLLPDKTNVLIKDETTILQTIETKLSEFFEVQDTMIIPKNENYQVKN 364

Query: 345 FHQDNAPKTHLPKYA------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
              +   KT     A      TS         L+      +DL  +D    + D D  E+
Sbjct: 365 SEIEIVEKTDNKNIAVHDDIDTSYKTKINATRLEGPSEDKDDLNGNDKQEKTGDQDEQEQ 424

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                 Q       +       + TD     D     E    E +     + +I++    
Sbjct: 425 ENDDEQQRPEVDNDVINLSEPVRKTD--KDSDNKKVSEIDNNENV-----ANQISTVNQP 477

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREI-PAILSKKNIPQLLRDII 517
           +     L   E   + E+        IK   F P    +    P+ +  K++      I+
Sbjct: 478 SNSQGVLSTNEQNEMSEN--------IKITTFEP---ILESAEPSTIENKHV------IL 520

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSG-------RKMQSIEMNRLL------REM 564
           DE +   ++   ++   +I ++      I+S          +   EMN+L        E 
Sbjct: 521 DEPVVLESSQ--ENNNNSIFSS----HDIKSSPQNTCTADTL---EMNKLFCHQEHDEEE 571

Query: 565 EKNPNSSQCNHGR---PTFIKLKLSDIEKL 591
           +K  +  Q NHG+   P   KL  S+ E +
Sbjct: 572 DKCDH--QDNHGKNFYPVKHKLDDSEEENM 599



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 106/311 (34%), Gaps = 23/311 (7%)

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
                  N +P K  +           I    +          S  L + M+ + +    
Sbjct: 576 HQDNHGKNFYPVKHKLDDSEEEN-MTVISIGDETFQQYDERRPSKRLKRDMLRNMYNKKI 634

Query: 351 PKTHLPKYATSLTNTQEKLFLQEN-----------RLSTNDLLPSDDPTYSEDNDPVEES 399
             +     ++   N Q      E+             S  DL  +    Y E        
Sbjct: 635 VNSSQDILSSINKNLQSPQNQSESIVIKKEPDEVKPNSVEDLQTNQQQQYEEVESYQINK 694

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           +       I    +    +     + L I+DQHA+ E+  FEK+     S KI  Q L+ 
Sbjct: 695 QDFLKMKLIGQFNLGFIIVDFDDNNNLFIIDQHASDEKYNFEKLM---ASFKINYQLLIK 751

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFG---PNAIAIREIPAI----LSKKNIPQL 512
           P  ++L   +  L++++ E  H  G K +       N I +  +P       +  +  +L
Sbjct: 752 PIKLELSVIDQMLVIDNQEIFHNNGFKLKINSTPVDNEILLLTLPIYQNITFNLDDFNEL 811

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L +++ +  D         +I+ ILA  AC  SI  G  +   +M  ++  +        
Sbjct: 812 L-NLVSQQQDQINPNLKCSKIKKILAMKACRSSIMIGTFLSKSKMREIISNLSTLDKPWN 870

Query: 573 CNHGRPTFIKL 583
           C HGRPT   L
Sbjct: 871 CPHGRPTMRHL 881


>gi|326436264|gb|EGD81834.1| Pms2 protein [Salpingoeca sp. ATCC 50818]
          Length = 934

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 83/333 (24%), Positives = 158/333 (47%), Gaps = 20/333 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR++  + +++I +G+++   S+A+KE++EN LDA +  +       G  + ++ D+G G
Sbjct: 2   IRQIRREDVHRICSGQVVLSLSVALKEIVENGLDAGAKTITIKAKDYGLDYIEVADDGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA- 119
           +         ++H TSKI+  +D   + TFGFRGEAL S+ AVS LT+ +    +  G  
Sbjct: 62  IEDSNFASLAKKHHTSKIAQFEDLETVGTFGFRGEALSSLCAVSELTVTTSTSSSGAGHD 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIA 178
               +  ++++ +P A   GT V++ +LF ++P RL    K ++ E   +  +++   + 
Sbjct: 122 LHYDADGELAAKKPCARERGTTVKIANLFHSLPVRLTELRKHKKREFAKLVSMLQGYCMV 181

Query: 179 YPKVSFTFST---IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI---- 231
            P V F+ +      + R  +  +  + +  +  + + G   +  A+ L +   EI    
Sbjct: 182 RPDVQFSLTHIQGNSARRLVLKTRGGDASVLDVATALFGSKTVQFAIVLTKTLTEIKTVD 241

Query: 232 ------TLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPV 283
                  + GY   P     R + ++ + FIN R  +   +   +  AY       +YP 
Sbjct: 242 GPLPGLKVSGYVSKPMQTLGRSSPDRQFFFINQRPCEFAKLSRAVNEAYRAY-NKNQYPF 300

Query: 284 VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316
           VV  L +  ++VDVNV P K  + F     +  
Sbjct: 301 VVAHLHMPQQEVDVNVTPDKRTLFFHKEQALLE 333



 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 7/201 (3%)

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
            +   + +   +     +       Q +  +II++    L IVDQHA+ E+  FE+++Q 
Sbjct: 715 CSDDAEKELSTQISKDDFSDMQVIGQFNLGFIIARLHHHLFIVDQHASDEKYNFERLQQV 774

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA---ERFGPNA-IAIREIPA 502
              TKI  Q L+ P  +DL   +  L++++     + G +    E   P   + + +IP 
Sbjct: 775 ---TKIKRQVLIRPRPLDLPAVDENLLLDNLHIFQQNGFEFAVDEHAAPGKRVRLSQIPH 831

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
               +     + +++  + D    +    RI  + A+ AC  SI  G+ +   EM  +L+
Sbjct: 832 SKGTEFGIDDIHELLFMLRDQPGVFCRPSRIRGMFASRACRSSIMIGKALTRPEMRAILQ 891

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            M        C HGRPT   L
Sbjct: 892 HMGTMEQPWNCPHGRPTMRHL 912


>gi|156843433|ref|XP_001644784.1| hypothetical protein Kpol_1020p35 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115434|gb|EDO16926.1| hypothetical protein Kpol_1020p35 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 957

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 157/361 (43%), Gaps = 31/361 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  L +  +++I +G++I   + A+KELI+NS+DA + +++  +   G    + +D+G 
Sbjct: 3   KIASLGKSDVHRITSGQVIIDLTTAVKELIDNSIDASAKQIDITLKNYGIDSIECSDDGV 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++ +       +H TSKIS  +D S++ T GFRGEAL S+ A+S +++++         
Sbjct: 63  GISVDNYESLALKHYTSKISNFEDVSSVQTLGFRGEALSSLCAISKVSVVTTTKAPRADR 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
                   +        N GT V V  LF  +P R     K+ +       ++I+  AI 
Sbjct: 123 LEYDMHGTLIGKSTTTRNKGTAVIVSQLFNNLPVRRKEFIKTSKRHFTKCINLIQSYAII 182

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK--------- 227
              V FT   +     + ++     N +  + I  + G + ++   +++ +         
Sbjct: 183 QNDVKFTVWHVTPSGKKQQILSTLRNNSIQKNILSIFGSNSLHGLSDIDAEIDLNPYKPS 242

Query: 228 --------------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTA 271
                           +I  +G     +F     + ++ YV+IN R ++   I       
Sbjct: 243 FGNKYVMDTGFEQLDYKIRAKGLISKNSFGCGRTSKDRQYVYINKRPIEYSLINKCCNEI 302

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y +   + +YP   +  EI    +D+N+ P K  I F N   + +   + + K  +K+  
Sbjct: 303 YRQYNNV-QYPAFFIDFEISSELIDINITPDKRTILFHNERYVIDVFKEELIKYYDKQEF 361

Query: 332 S 332
           S
Sbjct: 362 S 362



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 22/227 (9%)

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEAT--------HYQLGIACAQIHQNYIISQTTDG-- 425
            S +D   +++ T +   + +EE E           +       Q +  +II+    G  
Sbjct: 719 TSNHDNSHNNEETRNYKIEDIEEGEKYLTLTVNKDDFNRMEIVGQFNLGFIIATRKVGDK 778

Query: 426 --LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
             L I+DQHA+ E+  FE ++    ST   SQ L+ P+ ++L   +  L++E+     + 
Sbjct: 779 YDLFIIDQHASDEKYNFETLQ---KSTVFKSQKLIVPQPVELSVIDELLVIENIGIFEKN 835

Query: 484 GIKAE----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS---STTYTLQDRIENI 536
           G K E        N I +  +P             +++  I ++     +     +I ++
Sbjct: 836 GFKIEVDEDDTQGNKIKLVSLPVSKRTLFDINDFMELLHLIKNNVGIIKSDIKCTKIRSM 895

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            A  AC  SI  G+ +    M+++++ + +      C HGRPT   L
Sbjct: 896 FAMRACRTSIMIGKPLTKKTMSKVVKHLSELHKPWNCPHGRPTMRHL 942


>gi|50305491|ref|XP_452705.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641838|emb|CAH01556.1| KLLA0C11319p [Kluyveromyces lactis]
          Length = 923

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/363 (24%), Positives = 159/363 (43%), Gaps = 31/363 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ +    I++I +G++I     AIKEL+ENSLDA++ ++E +    G    +  DNG
Sbjct: 1   MGIQAIENADIHKITSGQVIVDLRSAIKELLENSLDAKADKIEIIFKNYGIESIECADNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ +++    Q+H TSKIS  +D S + +FGFRGEA+ S+  +  + + +        
Sbjct: 61  VGISEDDLDNVGQKHRTSKISSFEDVSKVTSFGFRGEAIASLCQMGKVIITTTTKG-PKA 119

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
            +I  +     +    + N GT V V +LF T+P R     K+ + + N   D+I+  AI
Sbjct: 120 YKIVFNHSGTCNKIICSRNTGTTVLVSNLFDTLPVRKKDFIKNYKRQFNRSIDLIQSYAI 179

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGED------------------- 216
               V  + S +     +  +       +    +  V G +                   
Sbjct: 180 IQTNVKISVSNVLPSGKKTLILSSIGKSDITRNLVSVFGSNAGKGLASIDVDLDLSNIRH 239

Query: 217 ---FINNAVELNEKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTA 271
                 N  E N    ++ + G   + +F  G A  ++ YV+IN R V    +  TI   
Sbjct: 240 TSILPENQKEENASEFQVKITGQISMVSFGCGRASKDRQYVYINKRPVDYPKVAKTINET 299

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y     + +YP  VL   +  + +D+NV P K  +       + + + +S+Q    K+G 
Sbjct: 300 YQSFNNV-QYPSFVLDFRVGTKFLDLNVTPDKRTVSLHYEEYVLDALRESLQLFFQKQGF 358

Query: 332 STS 334
              
Sbjct: 359 VVP 361



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 14/195 (7%)

Query: 400 EATHYQLGIACAQIHQNYI----ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
               +Q      Q +  +I      +    L IVDQHA+ E+  FE ++    +T   SQ
Sbjct: 717 SKNDFQNMTIVGQFNLGFIIVTRCKEGAFDLFIVDQHASDEKYNFEMLQ---KNTVFKSQ 773

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQ 511
           +LL+ + ++L   +  L+ME+ +   + G K     E      I +   P   +      
Sbjct: 774 SLLSLKTLELSVIDELLVMEYKDVFSKNGFKLSIDQEEEPGQRIKLVSFPVSKNTMFTEY 833

Query: 512 LLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
              ++I  I +      +     +I ++ A  AC  SI  G+ +    M +++  +    
Sbjct: 834 DFHELIQLIREHEGHDMSNIRCSKIRSMFAMRACRSSIMIGKPLSMRTMKKVVNNLSDLE 893

Query: 569 NSSQCNHGRPTFIKL 583
               C HGRPT   L
Sbjct: 894 KPWNCPHGRPTLRHL 908


>gi|170063399|ref|XP_001867088.1| DNA mismatch repair protein pms1 [Culex quinquefasciatus]
 gi|167881032|gb|EDS44415.1| DNA mismatch repair protein pms1 [Culex quinquefasciatus]
          Length = 860

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 39/348 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +    +++I +G+++   +IA+KEL+ENS+DA ++ VE  +   G    ++ DNG 
Sbjct: 20  KITAIDRDTVHRICSGQVVLNLAIAVKELVENSIDAGATVVEVKLKDYGAELVEVVDNGS 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+          ++ TSK+ +  D + I TFGFRGEAL S+ A++ + +++R      G 
Sbjct: 80  GVEQRNFEGMTAKYHTSKLREFSDLAGIETFGFRGEALSSLCALADMVIVTRHETAPHGT 139

Query: 120 QIA-ISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAI 177
           ++       I+   P+A   GT V + +LF T+P R   F K+ + E   ++ +++   +
Sbjct: 140 KLELNHRGVITKRSPIARAVGTTVSLSNLFSTLPVRKKEFQKNVKKEFFKMSQILQAYCL 199

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTN--GNFPERISQVIGEDFINNAVELNEKS------- 228
               V    +  K    K    ST   G+  + I+ V G       V+L +         
Sbjct: 200 VSTGVRIICTNQKKKGQKEVVMSTQGTGSVLDNITTVFGTKQAAELVQLKQAIGTNGKIL 259

Query: 229 -----------------------NEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKF 263
                                  +  T++GY         R   ++ + F+N R  + K 
Sbjct: 260 DLNESDFDENISMTQEEVDSLNLSRYTIEGYISSCAHGSGRSARDRQFFFVNSRPCEPKQ 319

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP 311
           I+  +   Y +       P V L L++D   VDVN+ P K  +   N 
Sbjct: 320 IIKLVNETYHKYNASHT-PFVFLNLKMDRADVDVNLTPDKRQLLMNNE 366



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 84/193 (43%), Gaps = 8/193 (4%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           + +   + +++   E     +       Q +  +II++    L I+DQHA  E+  FE +
Sbjct: 635 NPNSNRAAEDELQMEITKEKFGKMEIIGQFNLGFIIARLDADLFIIDQHATDEKYNFEDL 694

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIRE 499
           ++   +T + +Q L+ P+ ++L      ++M+  E     G + E  G       I +  
Sbjct: 695 QR---NTVLQNQKLVVPQPLELTAVNEMILMDSLEIFEMNGFQFEVDGGAEPTKKIKLVA 751

Query: 500 IPAILSKKNIPQLLRDIIDEIIDS-STTYTLQDRIENILATMACYGSIRSGRKMQSIEMN 558
            P   + +   + + ++I  + D+   T     R+ ++ A+ AC  S+  G+ +   EM 
Sbjct: 752 KPFSKNWEFGKEDIDELIFMLQDAVPNTVCRPSRVRSMFASRACRKSVMIGKALTVAEMR 811

Query: 559 RLLREMEKNPNSS 571
           RL+  M +     
Sbjct: 812 RLVTHMGEIEQPW 824


>gi|195455398|ref|XP_002074706.1| GK23208 [Drosophila willistoni]
 gi|194170791|gb|EDW85692.1| GK23208 [Drosophila willistoni]
          Length = 875

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 164/417 (39%), Gaps = 47/417 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +++  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG G
Sbjct: 18  IKAIAKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIRLKDQGLQGVEVSDNGSG 77

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S +T+ +R    +   +
Sbjct: 78  VEETNLEAMTAKYHTSKIREFIDLLEVETFGFRGEALSSLCALSDMTIQTRHKSTDVAVK 137

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
           I +  E KI    P A   GT V + +LF T+P R     ++ + E N    +++   + 
Sbjct: 138 IELDHEGKIKKRLPCARGIGTTVILSNLFSTLPVRRRDFTRNIKKEFNKTCQILQAYCLV 197

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE------------- 223
              V    S    K  +  +       +    IS V G+    + V              
Sbjct: 198 SKGVRLICSNQTAKGVKSVVLQTHGVDDVLANISAVFGQRQAADLVTLKSPFEKGELSEA 257

Query: 224 ----------------------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTV 259
                                      NE  L+G+         R   ++ + F+N R  
Sbjct: 258 DLRNELESSGDTTTTQFTAQDVEQLNRNEFQLEGFISSCRHGAGRSTRDRQFFFVNSRPC 317

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
             K I   +   Y       + P + L +      VDVN+ P K  +   N  I    I+
Sbjct: 318 DPKNISKVMNDVYHRFNAQ-QQPFIYLNVVTARADVDVNLTPDKRQLLLNNEKI---LIL 373

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
              +  +N  G   S+   +        D  P     +   + T+ +E       R 
Sbjct: 374 ALKKSLLNTFGSMPSTFQMQNTTLVSMLDPKPAKEESQLDDTSTDIEEVPATSSQRF 430



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 106/281 (37%), Gaps = 14/281 (4%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           ++   I              +  +++  +    + +  ++ A +    +   S    + K
Sbjct: 584 QDEDHIEMPKRIEFDGNSADEDETSALNVCSGELCTSLEEIAARLKAQELRQSTNRARAK 643

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
           L     RL     +       +E  +  +E     +       Q +  +II +  D L I
Sbjct: 644 L----QRLRFKTEINPTQNVKAE-AELQKEIAKEDFARMEIIGQFNLGFIIVKLEDDLFI 698

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA- 487
           VDQHAA E+  FE +++      +  Q L  P+ ++L      ++M+H     + G K  
Sbjct: 699 VDQHAADEKYNFETLQKCTQ---LEYQRLAVPQPLELTAINEMVLMDHLPVFEKNGFKFQ 755

Query: 488 ---ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACY 543
              E      + +   P   + +   + + ++I  + D+         RI  + A+ AC 
Sbjct: 756 IDAEAPATKKVRLLGKPYSRNWEFGKEDIDELIFMLQDAPEGTICRPSRIRAMFASRACR 815

Query: 544 GSIRSGRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
            S+  G+ +     M RL+ +M +      C HGRPT   L
Sbjct: 816 KSVMIGKALNRKTTMKRLITQMGEIEQPWNCPHGRPTMRHL 856


>gi|154338371|ref|XP_001565410.1| mismatch repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062459|emb|CAM42321.1| putative mismatch repair protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1368

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 25/215 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL++ +IN+IAAGE+++RPS A+KEL+ENS+DA  +RV+ V A GG    Q++D+G G
Sbjct: 4   IHKLTDDVINRIAAGEVVQRPSAALKELLENSIDAGCNRVQVVAAEGGLEVLQVSDDGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR--------- 111
           +  E++P+  +R+ TSK+   +D   + +FGFRGEAL SI  VS +T+ +R         
Sbjct: 64  IHKEDLPLLCERYATSKLQTFEDLHRVTSFGFRGEALASISYVSRVTVTTRRHQACDEAS 123

Query: 112 ------------PPQNNTGAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
                               +   ++G  +   +P A NPGT + V  LF+    R   L
Sbjct: 124 DGAPSACAHALSTAGAAVAWRCQYLNGALLGDPQPCAGNPGTTIRVEKLFYNTLVRRRSL 183

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           +    E   I D++ R A+A+P V FT    K+ R
Sbjct: 184 R-ASEEWGRIVDIVSRYALAFPAVGFTCHREKAYR 217



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GYT  PT      +   VFIN R V+   I   I   Y   +  G  P  VLLL +   +
Sbjct: 386 GYTSDPTLT-QRKSYLCVFINQRLVESAAIRKAIDAVYNGVLTGGNRPFTVLLLSVPTDR 444

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           VDVNVHP K  +   +  +I   + +  + A
Sbjct: 445 VDVNVHPTKKEVCLLDEELIVLRVAEVCRGA 475


>gi|311302922|gb|ADP89035.1| PMS1-like protein [Trichomonas vaginalis]
          Length = 539

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 121/560 (21%), Positives = 228/560 (40%), Gaps = 27/560 (4%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L +     + A E I  P+ A++E+IEN  DA  + +   +  GG     ++DNG G+
Sbjct: 2   KTLGKHDSTMVRATETISSPAHALREMIENVFDAGCTLLTIRVGNGGLDHISVSDNGPGI 61

Query: 64  TSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + E + M      TSK    D S     G RG AL +I  +S+LT+ +    +N G ++ 
Sbjct: 62  SEEGLSMICDEGVTSKEFGKDVS-----GGRGRALEAISYLSYLTIDTCTDNSNNGWRLQ 116

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPK 181
                   +  +    GT V  + LF+  P R ++  + +  + + I ++ +  AIA   
Sbjct: 117 FDENHTRKMEKITRPKGTTVTAQTLFYGQPVRRHYFLEHKSQQVSDIIEITQSFAIAS-S 175

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
            + T +       +++    +          I + F +  V L++  +E +L+ YT  PT
Sbjct: 176 ANMTVTLDNKLLIQVSTPKRDSRISTVFGSDIMKGFEHGKVSLDKWHSEASLEYYTATPT 235

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            N          +N R      +   I+  +       + P  V  +       D   + 
Sbjct: 236 ANSNKK--ILFIVNNRPCVCSGLYRAIKNEFR-LCAGPKLPSGVFFITAPRNTFDFIPNS 292

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
               I F +       + ++  + ++     +S  L+   + S      P   LP+  T 
Sbjct: 293 PLISISFEHEN----ILQKTFCEILSSVWKKSSEKLTFNNVISEE----PIRSLPQM-TR 343

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP---VEESEATHYQLGIACAQIHQNYI 418
           L NT+        + +T+D+L       +   D     +  E   ++      Q +Q++I
Sbjct: 344 LKNTEPLGIECHCQATTDDILERFKNCQNYVPDYGLSYDAIETKAFKDMEIIGQWNQSFI 403

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I++    +  +DQHAA E   FEK+R+      I SQ L++P +I     E +   E  +
Sbjct: 404 ITKYGCDIYAIDQHAAMEAQNFEKLRKKC---SIQSQRLISPIVISATPQEISAAEECKQ 460

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
                G   +    N+I +++IP+I +       L ++I  + +S  +  +       +A
Sbjct: 461 KCKEFGYDYD-ISDNSIHVKKIPSITTVATGSDDLLELITMLHESPASQPMTRNARIWMA 519

Query: 539 TMACYGSIRSGRKMQSIEMN 558
             AC+ S+R G  M   +M 
Sbjct: 520 YRACHSSVRVGDTMNHSQMK 539


>gi|71027751|ref|XP_763519.1| DNA mismatch repair protein PMS1 [Theileria parva strain Muguga]
 gi|68350472|gb|EAN31236.1| DNA mismatch repair protein PMS1, putative [Theileria parva]
          Length = 791

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 1   MKIRKLS--EKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITD 58
           M ++ L   +  I++  + ++I   S  I+EL+EN++DA+++ +E  I  GG    ++ D
Sbjct: 1   MSLQSLDHQQSCISR--SFQVITGISCVIRELVENAIDAQATNIEIKIYNGGADLIKVAD 58

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           NG G++         +H TSKI   +D   ++ TFGFRGEAL S+  + ++ + +R P +
Sbjct: 59  NGTGISEINFTNLASKHSTSKIRTFEDLFTSLTTFGFRGEALYSMCNLGNVEIETRTPSS 118

Query: 116 NTGAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
           + G  +       I+S  P+A N GT V+VR+LF   P R    +++ + + +     I+
Sbjct: 119 DNGWLLRFDSLGNITSKTPIASNIGTCVKVRELFGEYPVRRKMLIRNSKNQISKSVSQIQ 178

Query: 174 RMAIAYPKVSF---TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           + A+  P +SF   T +  K          +  N    I ++ G +F    V++N K  E
Sbjct: 179 QYALINPHISFNFTTVTNNKKFSNIFATSGSKDNVRGVIEEIFGHEFAKKLVQINIKDKE 238

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             ++G    P   RG     Y +IN R +          +A          P  +L L +
Sbjct: 239 WRIEGLVSNPYNERGYREMEYFYINKRPISKVQKFKNAISAIFSHFSSKSKPSFILNLTM 298

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           +   +DVN+ P K      +   I      S    +
Sbjct: 299 NYDHIDVNISPDKRSAYIYSEDYIIRTFKVSFYAIL 334



 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 42/244 (17%)

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +  +       E      +       ++    + S+    L ++DQHAA E+  FE++  
Sbjct: 548 EHNFLNPQVFDEMELIGQFNKSFIITKLTFPEVKSKYNFSLYVIDQHAADEKARFERL-- 605

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA------------------ 487
              + KI  Q L+ P++I+L      +       L   G                     
Sbjct: 606 -NKTVKINKQRLIYPKLIELSPFLTQVAENSMNVLLSNGFDVRVCREKEFLVFNDEDLSM 664

Query: 488 -----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSS--------------TTYT 528
                E+ G   + +  +P IL K        D ++E+  +                   
Sbjct: 665 TSAYTEKIGRG-VYVHTLPQILGKVLGEDDFVDFLNELSATEYVENSKQSEFIWGLGNTP 723

Query: 529 LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLSD 587
              +I +ILA+ AC  S+R+G  + + +M  ++R M    +   C HGRP+   L     
Sbjct: 724 RPHKIWSILASRACKSSVRAGDGLTNGQMKNIVRRMGTLIHPWNCPHGRPSIKCLVSHQQ 783

Query: 588 IEKL 591
           +E+L
Sbjct: 784 LEEL 787


>gi|229594773|ref|XP_001030203.2| DNA mismatch repair protein, C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|117556977|gb|ABK35674.1| putative mismatch repair protein [Tetrahymena thermophila]
 gi|225566596|gb|EAR82540.2| DNA mismatch repair protein, C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 946

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 95/426 (22%), Positives = 177/426 (41%), Gaps = 16/426 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL +  I  I   ++I   +  +KEL+ENSLDA S+++E  +   GK   ++ DNG G
Sbjct: 2   IKKLDQSSILNICVNQVIIDLATCVKELVENSLDAGSTKIEVYLKEYGKEGVEVVDNGSG 61

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++S+ +    Q+  TSK+    D  ++ TFGFRGEAL +I  +S LT+ ++   +    +
Sbjct: 62  ISSQNLEQIAQKGATSKLRQFQDLESLDTFGFRGEALNAISVLSQLTITTKTDSDEMAYR 121

Query: 121 IAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIRRMAIA 178
              +    I S   V    GT + + DLF  IP R   F K+   + N + ++I   AI 
Sbjct: 122 YQFNQDNTIKSKTLVPRERGTTISLTDLFGNIPVRKQEFNKNIISQYNKLVNMITEYAII 181

Query: 179 YPKVSFTFSTIKSNRYK---MNFQSTNGNFPERISQVIGEDFINNAVELNEKS--NEITL 233
                       S + +   +N  S   N  ++ +QV  +   +  V+L          +
Sbjct: 182 SVNCQICLINQSSKKGREMILNSGSPMKNMLQKTAQVFSKKISDMLVDLKFDFGEECSVI 241

Query: 234 QGYT-------GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +GY         +        N  Y+F+N R V     +++I +   +        + +L
Sbjct: 242 EGYILNRQTSGSVQDSKSIQKNMSYLFVNTRPVNPFKKMNSIFSDIYKKYNSSARYIYIL 301

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
            L++    +D NV P K  I  +        +  ++ +   K       ++   + S   
Sbjct: 302 HLKVKKDAIDFNVSPDKRDIFIKYENEFYTALRDNLTQLFEKLNSIQKVLMPVVISSKIK 361

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
             +   +      +S    Q+ L  Q+ + +        +    E++   E+SEA + + 
Sbjct: 362 DTSMDDSEDDSQESSNQQKQKTLSTQQTKQTKLFQKLKQEINIQEEDLSNEDSEANNQKE 421

Query: 407 GIACAQ 412
               + 
Sbjct: 422 LEILSF 427



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 110/307 (35%), Gaps = 15/307 (4%)

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
             +        N   +++  +  +   +     +   K + +       V     I    
Sbjct: 625 NCDDQCCTQSQNYSNSQNEYKSEDS-SLYKMKEEKQTKQLKQSLNQEELVQKHFQIQEEA 683

Query: 347 Q--DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
           +  +      L +    +   Q + F  +++        +DD          E+ +   +
Sbjct: 684 RILNKKQNNELMEIDEKIDQDQGRAFKIKSKKEDEIEELADDLEEQLKTWESEDFKKDKF 743

Query: 405 QLGIACAQIHQNYIISQ--TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
                  Q ++ +II+     D + ++DQHA+ E+  +E++           Q L+ P  
Sbjct: 744 VELQIIGQFNKAFIIAYWVEKDQIFLIDQHASDEKTNYERLL---KENNFQGQKLVKPIE 800

Query: 463 IDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           + L   E  ++  + E   + G +      E  G   + I ++P+    +       +I 
Sbjct: 801 LSLTIQEADILENNREIFKKNGFQFQIKYDESNGEPNLYINQLPSSKHIQFNINDFDEIF 860

Query: 518 DEI--IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
             I   ++        +I+ ILA+ AC  SI  G  +    M ++L  + K  +   C H
Sbjct: 861 QNINNEETDIETFRPKKIQRILASKACRSSIMIGTALNKSSMKQILLNLSKLQSPWNCPH 920

Query: 576 GRPTFIK 582
           GRPT +K
Sbjct: 921 GRPTMVK 927


>gi|115786267|ref|XP_797096.2| PREDICTED: similar to homolog of yeast mutL gene, partial
           [Strongylocentrotus purpuratus]
          Length = 695

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 156/361 (43%), Gaps = 47/361 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
            KLS + +  I++ ++I   +  +KEL+ENSLDA +  VE  +   G    ++ DNG G+
Sbjct: 2   HKLSGETVRLISSAQVITSVASVVKELLENSLDAHADNVEIKLENCGIDKVEVRDNGDGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            +++     +RH TSK+   DD  ++ T+GFRGEAL S+ AVS++T+ ++      G   
Sbjct: 62  QADDADFMGRRHYTSKLSNHDDLEDLITYGFRGEALGSLCAVSNVTIATKTKDEEVGRCY 121

Query: 122 AISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  E I SS +P     GT V    LF  IP R  +    K  + E   + D++    +
Sbjct: 122 TLDHEGIASSPKPSQCCTGTTVTASRLFHNIPVRKQYYSNAKRRRDELKKVEDLLLSFGV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P V F+ S  K++ ++ N      N    +  ++G + ++  +               
Sbjct: 182 VCPGVRFSLSHNKASIWQKNKVP---NIRAALLNMLGSNVMSQLI--------------- 223

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP---LGRYPVVVLLLEIDPRQ 294
                              R  ++      ++  Y++  P     R+ ++ L + +    
Sbjct: 224 -------------------RVERNDEETQVVKQYYSQAHPKAGNVRHVIMCLAVSMPTHL 264

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVN+ P K+ +  +N   +   IIQ +++ + K        L  +  +      + +T 
Sbjct: 265 VDVNLEPNKTKVLLQNNDAVICLIIQMLEE-LYKATPPVEPTLPGQSQNQPLSGASAQTA 323

Query: 355 L 355
            
Sbjct: 324 T 324


>gi|303391489|ref|XP_003073974.1| DNA mismatch repair protein MutL [Encephalitozoon intestinalis ATCC
           50506]
 gi|303303123|gb|ADM12614.1| DNA mismatch repair protein MutL [Encephalitozoon intestinalis ATCC
           50506]
          Length = 635

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 121/669 (18%), Positives = 224/669 (33%), Gaps = 118/669 (17%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L E I  +I A   I    I +KEL+ENS+D+E + +   +         + DNG G
Sbjct: 2   IKRLPEDIGRRIKAQRSIPNTYIVVKELVENSIDSECTWIRIQVDD----SIVVEDNGCG 57

Query: 63  MTSEEIPMAVQRHCTSKISD--------DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
           ++  ++        TSK S         D     ++GFRG+AL S+  V  L ++SR  +
Sbjct: 58  IS--DLRDVGVEGSTSKESMAYYVLGCVDRVEKPSYGFRGQALSSLSEVCDLEIISR-SE 114

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE-QVETNLITDVIR 173
           +  G +   S      V   A   GT V VR+LF   P R +  +S  + +   I  +I 
Sbjct: 115 HPFGLKKDFST---GIVSRCAREKGTTVRVRNLFKNCPLRRSASESRLKKDLGRICALIE 171

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
                  K++FT       R  +          E                 N +     L
Sbjct: 172 SYRCTN-KINFTLFH---KRKVLLSCGGYETPREYFESNYPSFVGKYMELCNGQVEFFML 227

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
                 P           +F+  R + +K I + I+  +   +     P  VL+++    
Sbjct: 228 PASVREPK--------QLMFLERRPISNKRISAAIKNEFN--LYSEGIPTFVLVIKGYGD 277

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--KGISTSSVLSKKMISSFHQD--- 348
              VNV   KS + F +   I + +   I +  +      S S   +    S    +   
Sbjct: 278 ---VNVSTDKSEVIFSDEGGILSLLKSEIGRFFSSEVHMHSRSIPKTLGSYSPARNETED 334

Query: 349 ----------------NAPKTHLPKYATSLTNTQEKLFL-----QENRLSTNDLLPSDDP 387
                           + P   L + A SL   + K        +E    ++ +      
Sbjct: 335 NSGEGFMGSNFSGTAVHHPAVRLSRVAPSLGKRERKQNEMTEENEERSKDSSSVEEPSSG 394

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV-----------IVDQHAAHE 436
             S DN  V+ S +   +      +  Q   I +    L            +V    +  
Sbjct: 395 IGSLDNTEVKPSSSNLSEELEPPLEEKQQEEIYENEGHLATGAYSFFKYDELVHPKISFS 454

Query: 437 RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIA 496
           +  F ++              L       L        +   +   +             
Sbjct: 455 KSDFNRLEIIGQFNNGFIIAKLEKNEKTYLIAVDQHAADEIRNFENI--------KKTFY 506

Query: 497 IRE----IPAILSKKNIPQLLRD----------------IID----------------EI 520
           +++    +P  L    I +++ +                +++                E+
Sbjct: 507 LKKQSVIVPVKLDLTPIEEMIVNENSEVFEKNGFVVKNGMLETIPVYRNQVFGIKEFREL 566

Query: 521 IDSSTTYTLQ-DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           ++       +  +I +I+A+ AC  S+  G  + + +M R++R +       +C HGRPT
Sbjct: 567 LEDVKNEEYEFKKIRSIIASKACRTSVMIGDALSAADMKRIVRSLGVLDRPWKCPHGRPT 626

Query: 580 FIKLKLSDI 588
           F+ L  ++I
Sbjct: 627 FMILNEAEI 635


>gi|313216746|emb|CBY37996.1| unnamed protein product [Oikopleura dioica]
          Length = 188

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 3/176 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IRKLS+ +IN+IAAGE+++RP+ AIKELIENS+DA +  ++     GG   F I D+G
Sbjct: 1   MPIRKLSQDVINKIAAGEVVQRPANAIKELIENSIDAGAKSIKIKTKKGGLEMFSIEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+A  R  TSK+ +  D  +I +FGFRGEAL SI  V HLT+ S+P      
Sbjct: 61  CGIAMEDLPLAGVRFATSKLQEYTDLKDIGSFGFRGEALASISHVGHLTITSKPASQQVA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
            +++    + +    P A   GT+++V+DLF  +  R       + +         
Sbjct: 121 YKLSFDEGQANGEAIPSAGKNGTLIQVKDLFHNMNMRQKSYNPNEEQYKKSQKYFC 176


>gi|218516329|ref|ZP_03513169.1| DNA mismatch repair protein [Rhizobium etli 8C-3]
          Length = 261

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/259 (45%), Positives = 156/259 (60%), Gaps = 2/259 (0%)

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE--DNDP 395
            +          + +T   +         E+     +RLS         P+         
Sbjct: 2   FQPHAQRPQAPWSAETSPFRPYPPAAGFSERPQASFDRLSMPTARAELQPSPQPGAPEPA 61

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                   Y LG A AQIH NYI++QT DGLVIVDQHAAHERL+FE MR+  +S ++ SQ
Sbjct: 62  ASAETTGRYPLGAARAQIHANYIVAQTEDGLVIVDQHAAHERLVFEAMRKALHSKRLASQ 121

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PEIIDL E +C  +M+H  +L  LG+  ERFGP AIA+RE PA+L + +   L+R 
Sbjct: 122 VLLIPEIIDLPEEDCDRLMQHAAELSELGLAIERFGPGAIAVRETPAMLGEVDAHGLIRQ 181

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           + DEI +  T   L  ++E + ATMAC+GS+RSGR+++  EMN LLREME  P S QCNH
Sbjct: 182 LADEIAEWDTASGLSAKLEYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSGQCNH 241

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+I+LKLSDIE+LFGR
Sbjct: 242 GRPTYIELKLSDIERLFGR 260


>gi|195172652|ref|XP_002027110.1| GL20044 [Drosophila persimilis]
 gi|194112923|gb|EDW34966.1| GL20044 [Drosophila persimilis]
          Length = 645

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 174/439 (39%), Gaps = 53/439 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +S+  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 20  QIKAISKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKMKDQGLQGVEVSDNGS 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 80  GVVEANLEAMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMAIQTRHQSTDVGL 139

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  + KI    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 140 KVELDHDGKIKKRSPCARAVGTTVTLTNLFSTLPVRRRDFTRNIKKEFAKMCQILQAYCL 199

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------ 229
               V    S    K  +  +       +    IS + G   + + V L           
Sbjct: 200 VTKGVRIICSNQTPKGAKTVVLQTHGAQDVLANISAIFGARQVADIVPLKSPFEKGQLSE 259

Query: 230 --------------------------------EITLQGYTGIPTF--NRGNANQFYVFIN 255
                                           +  L+GY         R + ++ + F+N
Sbjct: 260 VGLRAELESSADAADTTCTQFSAEDVERLNQADFRLEGYISSCRHGAGRSSRDRQFFFVN 319

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   I   Y     + + P + L +      VDVN+ P K  +   N     
Sbjct: 320 ARPCDPKNIAKVINETYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLLNNER--- 375

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
             I+    K    +    +    +   ++      P+   P+ A +   ++EK   ++  
Sbjct: 376 --ILLLALKKSLLETFGQTPSTFQMQNTTIVSMLEPRPK-PQPADAGKASEEKDEEEDVP 432

Query: 376 LSTNDLLPSDDPTYSEDND 394
           +S++         +    D
Sbjct: 433 ISSSQRFMDVLTQWRRTGD 451


>gi|322492197|emb|CBZ27471.1| putative mismatch repair protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1373

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 116/213 (54%), Gaps = 25/213 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I KL++ +IN+IAAGE+++RPS A+KEL+EN++DA  SRV+ V A GG    Q+ D+G 
Sbjct: 3   SIHKLTDDVINRIAAGEVVQRPSAALKELLENAIDAGCSRVQVVAAEGGLEVLQVCDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR-------- 111
           G+  E++P+  +R+ TSK+   +D   + +FGFRGEAL SI  VS +T+ +R        
Sbjct: 63  GIHKEDLPLLCERYATSKLQTFEDLQRVTSFGFRGEALASISYVSRVTVTTRRRQACDES 122

Query: 112 -------------PPQNNTGAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF 157
                              G +   ++G  +   +P A NPGT + V  LF+    R   
Sbjct: 123 GDGASGAGSCSSSTAGAAVGWRCQYLNGALLEDPQPCAGNPGTTIRVEKLFYNALVRRRS 182

Query: 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           L+    E   I DV+ R A+A+P + FT    +
Sbjct: 183 LR-ASEEWGRIADVVSRYALAFPAIGFTCYRDR 214



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GYT  PT  +       +FIN R V+   I   I   Y+  +  G  P  VLLL +   +
Sbjct: 386 GYTSDPTLAQRKP-YLCIFINQRLVESAAIRKAIDAVYSGVLTGGHRPFTVLLLSVPTDR 444

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           VDVNVHP K  +   +  +I + + +  + A
Sbjct: 445 VDVNVHPTKKEVCLLDEELIVSRVAEVCRGA 475


>gi|156846625|ref|XP_001646199.1| hypothetical protein Kpol_1013p12 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116873|gb|EDO18341.1| hypothetical protein Kpol_1013p12 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 753

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 133/722 (18%), Positives = 258/722 (35%), Gaps = 144/722 (19%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I K+  +++  +         S  ++E+I+NS+DA+S+ ++  +       F ++DNG 
Sbjct: 4   RIHKVDSEVLRLLVPQSKTISLSSTVREVIQNSVDAKSTTIKIFV-NFESHSFLVSDNGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM+ E +      + TSKI+  +D  N+ T+GFRGEAL +I  +S LT+ S+    N+  
Sbjct: 63  GMSPESLDNLGDDNVTSKITSLEDIRNVDTYGFRGEALSNISKLSQLTISSKCTAYNSTW 122

Query: 120 QIAISGEKISSVRPV--------------AMNPGTIVEVRDLFFTIPARLNFLKSEQVET 165
              +          V                  GT V V  +F+ +P R N        +
Sbjct: 123 IKKMPLRATMLTEEVTNSDSTAFNLIPKGIYETGTSVLVETIFYNLPVRRNMALDIPKYS 182

Query: 166 NL--ITDVIRRMAIAYPK--VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
            +  I + I +++I +P   +SF      + +  +N    N      +  V   +   + 
Sbjct: 183 IINDIKEEIFQISIFHPNIGISFNEVISNNTKSLLNILPANKYCEFELLTVRFRNVYQSP 242

Query: 222 VELN------EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
           V LN       K  E T+ G       +  +    +V+INGR   ++ +  +I      +
Sbjct: 243 VSLNSFKRVSIKFREYTINGVISKEAVS--SKRMKFVYINGRKYSNQGLFKSIDNISQSS 300

Query: 276 IPLG-----------------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
                                +Y  ++L +   P   D   +  K      + TII   I
Sbjct: 301 GFGHNKDSETSPTKSSRKLYSKYMALILTISCPPSLSDCLQNSEKVIEISTHSTIIDTLI 360

Query: 319 IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL----------------------- 355
            + IQ+ +  +G + +S    +   +   +N     L                       
Sbjct: 361 TKIIQRFLRYQGYTCASNTISETDINVSYENKIHKSLLLESLSKDTLSSMFTSKSISARI 420

Query: 356 -------------------------PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT-Y 389
                                    P       NT EKL    + +  +  L   D + Y
Sbjct: 421 QPNEIEGRYQNHKNVKKIHKNYSLKPTRVFKQDNTLEKLQKNISSIPGSSFLDIFDISRY 480

Query: 390 SEDNDPVEESEAT----HYQLGIACAQIHQNY-------IISQTTDGLVIVDQHAAHERL 438
           + D+  ++ +E               Q+ + +        I ++   L+++DQHA  ER+
Sbjct: 481 NGDSQNIDITEFNLDRLDLMDCKLINQLDRKFILLILPTNIKRSNPILLLIDQHACDERI 540

Query: 439 IFEKMRQDFNS---TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-----RF 490
             E+  +++ +   +K  +   +      + E E  L   + ++    GI+ E      F
Sbjct: 541 KLEEYLKEYLTSVRSKTVTTRKIKEIKFLITESENHLFEYYRKEFQYWGIEYEVCYDVEF 600

Query: 491 GPNAIAIREIPAILS---KKNIPQLLRDIIDEIID------------------------- 522
             + + + ++P  +    K + PQ+   ++  I +                         
Sbjct: 601 S-SYLKLIQLPDSIYDKLKIDGPQVKAALLQHIYELKDFKKFSVNKMFDDNGKDKKLDFE 659

Query: 523 -SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
                  +   +  +  + AC  +I  G K+   E   L+R++       QC HGRP+ I
Sbjct: 660 WWKYIRYIPIILLELFNSRACRSAIMFGDKLDKEECRILIRQLSDCHFPFQCAHGRPSTI 719

Query: 582 KL 583
            L
Sbjct: 720 PL 721


>gi|115976476|ref|XP_001188203.1| PREDICTED: similar to homolog of yeast mutL gene, partial
           [Strongylocentrotus purpuratus]
          Length = 734

 Score =  223 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 156/361 (43%), Gaps = 47/361 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
            KLS + +  I++ ++I   +  +KEL+ENSLDA +  VE  +   G    ++ DNG G+
Sbjct: 2   HKLSGETVRLISSAQVITSVASVVKELLENSLDAHADNVEIKLENCGIDKVEVRDNGDGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            +++     +RH TSK+   DD  ++ T+GFRGEAL S+ AVS++T+ ++      G   
Sbjct: 62  QADDADFMGRRHYTSKLSNHDDLEDLITYGFRGEALGSLCAVSNVTIATKTKDEEVGRCY 121

Query: 122 AISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  E I SS +P     GT V    LF  IP R  +    K  + E   + D++    +
Sbjct: 122 TLDHEGIASSPKPSQCCTGTTVTASRLFHNIPVRKQYYSNAKRRRDELKKVEDLLLSFGV 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P V F+ S  K++ ++ N      N    +  ++G + ++  +               
Sbjct: 182 VCPGVRFSLSHNKASIWQKNKVP---NIRAALLNMLGSNVMSQLI--------------- 223

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP---LGRYPVVVLLLEIDPRQ 294
                              R  ++      ++  Y++  P     R+ ++ L + +    
Sbjct: 224 -------------------RVERNDEETQVVKQYYSQAHPKAGNVRHVIMCLAVSMPTHL 264

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVN+ P K+ +  +N   +   IIQ +++ + K        L  +  +      + +T 
Sbjct: 265 VDVNLEPNKTKVLLQNNDAVICLIIQMLEE-LYKATPPVEPTLPGQSQNQPLSGASAQTA 323

Query: 355 L 355
            
Sbjct: 324 T 324


>gi|157870217|ref|XP_001683659.1| mismatch repair protein [Leishmania major strain Friedlin]
 gi|68126725|emb|CAJ05022.1| putative mismatch repair protein [Leishmania major strain Friedlin]
          Length = 1370

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 25/217 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I KL++ +IN+IAAGE+++RPS A+KEL+EN++DA  SRV+ V A GG    Q+ D+G 
Sbjct: 3   SIHKLTDDVINRIAAGEVVQRPSAALKELLENAIDAGCSRVQVVAAEGGLEVLQVCDDGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR-------- 111
           G+  E++P+  +R+ TSK+   +D   + +FGFRGEAL SI  VS +T+ +R        
Sbjct: 63  GIHKEDLPLLCERYATSKLQTFEDLHRVTSFGFRGEALASISYVSRMTVTTRRRQTCDES 122

Query: 112 -------------PPQNNTGAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF 157
                                +   ++G  +   +P A NPGT V V  LF+    R   
Sbjct: 123 GNGASGAGSCSFSTAGAAVAWRCQYLNGTLLEDPQPCAGNPGTTVRVEKLFYNALVRRRS 182

Query: 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
           L+    E   I DV+ R A+A+P + FT    ++   
Sbjct: 183 LR-ASEEWGRIVDVVSRYALAFPAIGFTCCRDRAYGC 218



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GYT  PT  +       VFIN R V+   I   I   Y+  +  G  P  VLLL +   +
Sbjct: 386 GYTSDPTLAQRKP-YLCVFINQRLVESAAIRKAIDAVYSGVLTGGHRPFTVLLLSVPTDR 444

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           VDVNVHP K  +   +  +I + + +  + A
Sbjct: 445 VDVNVHPTKKEVCLLDEELIVSRVAEVCRGA 475


>gi|297287878|ref|XP_002808391.1| PREDICTED: LOW QUALITY PROTEIN: mismatch repair endonuclease
           PMS2-like, partial [Macaca mulatta]
          Length = 539

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 143/321 (44%), Gaps = 13/321 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 58  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 117

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 118 V-EENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 176

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V++   I 
Sbjct: 177 LVFDHNGKIIQKAPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLQAYCII 236

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
              +  + +       +     T G  +  E I  V G+  + + +   +     ++   
Sbjct: 237 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQVQSLIPFVQVPPSDSVCEE 296

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            G+   +  +     +F   R   +  +   +   Y       +YP VVL + +D   V+
Sbjct: 297 YGLSCSDALH----NLFYCARISLEFLVSRLVNEVYHMY-NRHQYPFVVLNISVDSD-VE 350

Query: 297 VNVHPAKSYIRFRNPTIIRNF 317
           V    A+     R   +I + 
Sbjct: 351 VTQQRAQGSSWQRLEGLISSI 371



 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLR 514
           P+ ++L     A+++E+ E   + G              A  I  +P   +    PQ + 
Sbjct: 403 PQTLNLTAVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDID 461

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++I  + DS        R++ + A+ AC  S+  G  + + EM +L+  M +  +   C 
Sbjct: 462 ELIFLLSDSPGVMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCP 521

Query: 575 HGRPTFIKL 583
           HGRPT   +
Sbjct: 522 HGRPTMRHI 530


>gi|260812024|ref|XP_002600721.1| hypothetical protein BRAFLDRAFT_83463 [Branchiostoma floridae]
 gi|229286010|gb|EEN56733.1| hypothetical protein BRAFLDRAFT_83463 [Branchiostoma floridae]
          Length = 1034

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/276 (25%), Positives = 133/276 (48%), Gaps = 16/276 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L       +++ ++I      +KEL+ENSLDA+++ V+  +   G     ++DNG G+
Sbjct: 12  QALPAATARLLSSTQVITSVFSVVKELVENSLDAQATSVDVKLESFGFDRIVVSDNGSGI 71

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  +     QRH TSK+S   D  ++ T+GFRGEAL S+ AV+ +T+ ++   ++     
Sbjct: 72  SRADAEFMAQRHYTSKLSHQADLDSLETYGFRGEALGSLCAVADVTVTTKTAADDFSMIY 131

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +  + KI++ +P  +  GT + V +LF  +P R  +    K  + E   + D++  + +
Sbjct: 132 TLDRQGKITNSKPAHLGQGTTITVTNLFKNVPVRRQYYSAPKRRKEELKRVEDIMMALGV 191

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN--NAVELNEKSNEITLQG 235
             P V F+    K   ++ N      +    +  V+G   ++    VE      ++ +QG
Sbjct: 192 IKPDVRFSLIHNKCTVWQKNKYP---DHRTALRTVLGTGTMSLLLGVEHRSLEPQVEVQG 248

Query: 236 YTGIP-----TFNRGNANQFYVFINGRTVQDKFILS 266
           +   P     T  R   ++ +VF N R VQ K +  
Sbjct: 249 FLPKPGADPQTVTRATTDRSFVFFNERPVQMKGVEK 284


>gi|302840654|ref|XP_002951882.1| hypothetical protein VOLCADRAFT_61805 [Volvox carteri f.
           nagariensis]
 gi|300262783|gb|EFJ46987.1| hypothetical protein VOLCADRAFT_61805 [Volvox carteri f.
           nagariensis]
          Length = 369

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 152/344 (44%), Gaps = 24/344 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ ++ + I++I +G++I   + AIKEL+EN+LDA ++ +E  +   G +  ++ DNG G
Sbjct: 14  IKPINRQSIHRICSGQVILDLATAIKELVENALDAGATNIEVRLREYGSAMVEVADNGRG 73

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   +      ++ TSKI+  DD ++++T+GFRGEAL S+ AVS L++++R      G +
Sbjct: 74  VPPADYQALTLKYHTSKITSFDDLTSVNTYGFRGEALSSLCAVSELSVVTRTADQAAGVR 133

Query: 121 IAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +    E  ++   P     GT V V++LF T+P R   FL++ + +      V++  A+ 
Sbjct: 134 LEYDHEGLLTKQSPTPRAVGTTVAVKNLFATMPVRHKEFLRNLKRDFARAVAVLQAYALI 193

Query: 179 YPKVSFTFSTI-------KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
                   +          +        +      + +  V G   +++ V        I
Sbjct: 194 ATHARLIVTNQAGKATARTTVFTTTAPAAELAALRDNVVAVFGGKQLHSVVVRLSPRLSI 253

Query: 232 TLQGYTGIPTFNRGNA---------NQFYVFINGRTVQDKFILSTIRTAYAETIPLGR-- 280
            +      P  +  +          ++ + F+NGR V        +  ++          
Sbjct: 254 FVLILYPSPVRSWVSRAGCGLRGDASRQFFFLNGRPVDLPKAARILNDSFKSLSSPAHAA 313

Query: 281 --YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI 322
              P+ V+ + +    VDVNV P K  +       + + + Q I
Sbjct: 314 ACRPMAVVAVNLAASDVDVNVTPDKRRVFMAAEDRLCSLLQQVI 357


>gi|124803939|ref|XP_001347855.1| DNA mismatch repair protein MLH1, putative [Plasmodium falciparum
           3D7]
 gi|23496107|gb|AAN35768.1|AE014838_46 DNA mismatch repair protein MLH1, putative [Plasmodium falciparum
           3D7]
 gi|29650450|gb|AAO86766.1| DNA mismatch repair enzyme [Plasmodium falciparum]
          Length = 1016

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/202 (42%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL+E+ IN+IAAGE+I RP  A+KEL+ENSLDA SS +   +  GG    QI D+G 
Sbjct: 49  RIIKLAEEDINRIAAGEVIIRPCNALKELVENSLDANSSSISIHLNKGGLKSLQIIDDGD 108

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++ +  +R  TSKIS+  D  NI TFGFRGEAL SI  VS+LT+ S+   +    
Sbjct: 109 GIHKEDLRIVCERFTTSKISNHKDIRNIKTFGFRGEALASISHVSYLTITSKKRNSPFCY 168

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                  K +   P       GTI+   DLF+ +PARL  + +   E N   +V+++ AI
Sbjct: 169 TCNYKDGKPTQDEPTVCSGKNGTIIRFDDLFYNMPARLKTM-NPNDEYNKCLEVLQKYAI 227

Query: 178 AYPKVSFTFSTIKSNRYKMNFQ 199
            YP VSFT     SN   +N Q
Sbjct: 228 HYPNVSFTCKKWLSNTVDLNTQ 249



 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 15/192 (7%)

Query: 150 TIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM-------NFQSTN 202
            +P   N   +     N  TD   + A   P  S         +          N++   
Sbjct: 347 NLPHDNNITCNNLPCDNNHTD---KEATDNPDASSCMYNELEKKILEEEKYLDENYEKHL 403

Query: 203 GNFPERISQVIGEDFINN----AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRT 258
            N    I +V G +         ++           G    PT+N         FIN R 
Sbjct: 404 NNVRCVIQKVYGRNISKELSTIFLKEKSIPTFFKCYGLISNPTYNGKKGCYI-FFINDRL 462

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           V+   I  +    Y+  +  G YP + L L +    VD+NVHP K  + F     I   I
Sbjct: 463 VESNIIKKSCENQYSNFLAKGNYPWIYLSLRLKYDIVDINVHPTKKEVHFLYQEEISMLI 522

Query: 319 IQSIQKAINKKG 330
            + IQ+ +    
Sbjct: 523 GKKIQEFLKSFH 534


>gi|291333858|gb|ADD93540.1| DNA mismatch repair protein MutL [uncultured marine bacterium
           MedDCM-OCT-S04-C191]
          Length = 163

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 2/149 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           K+R L E +IN+IAAGE++ERP+  +KEL+ENSLDA + ++   +  GGK    + DNG 
Sbjct: 9   KVRILPESLINKIAAGEVVERPASVVKELVENSLDAGADQILVTLKNGGKDLISVLDNGS 68

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           GM   +   A++RH TSKIS  +D S I T GFRGEAL +I +VS L L +   ++    
Sbjct: 69  GMNETDALHALERHATSKISAEEDLSRIQTLGFRGEALAAISSVSRLELTTCSNESKGAV 128

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLF 148
           Q  ++G  +          GT + V  LF
Sbjct: 129 QFRLNGGVLEHQGKTGFPRGTKISVEQLF 157


>gi|68068487|ref|XP_676154.1| DNA mismatch repair protein MLH1 [Plasmodium berghei strain ANKA]
 gi|56495716|emb|CAH97070.1| DNA mismatch repair protein MLH1, putative [Plasmodium berghei]
          Length = 496

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KLS++ IN+IAAGE+I RP  A+KEL+ENSLDA S+ +   +  GG    QI D+G 
Sbjct: 14  RIIKLSKEDINRIAAGEVIIRPCNALKELVENSLDANSTNISVQLNKGGLKSVQIIDDGD 73

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSKIS   D  +I TFGFRGEAL SI  VS+LT+ ++  ++++  
Sbjct: 74  GIHKDDLYIVCERFTTSKISSHKDIRSIKTFGFRGEALASISHVSYLTITTKKRKSSSCY 133

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                  K +   P A     GTI+   DLF+ +  RL  L +   E N   DV+++ +I
Sbjct: 134 TCTYKDGKPTQKEPTACSGKDGTIIRFDDLFYNMKTRLKTL-NHNDEYNKCLDVLQKYSI 192

Query: 178 AYPKVSFTFSTIKSNRYKMNFQ 199
            YP V+FT     SN   ++  
Sbjct: 193 HYPHVTFTCKKWLSNVVDLSTY 214



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 4/135 (2%)

Query: 203 GNFPERISQVIGEDFINNAVELNEK---SNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
            N    I ++ G +     + +             G    P++N   ++    FIN R V
Sbjct: 285 NNTKTIIQKIYGRNVSKELIPIFVNEKIPTFFKCYGLISGPSYNSKKSSYI-FFINDRLV 343

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           +   +       Y   +  G YP V L L +    VD+NVHP K  + F     I   I 
Sbjct: 344 ESNILKRACENQYNNFLGKGNYPWVYLALRLKYDIVDINVHPTKKEVHFLYQDEIATLIS 403

Query: 320 QSIQKAINKKGISTS 334
           + I++ + K     S
Sbjct: 404 KKIEEILKKINNMRS 418


>gi|198459330|ref|XP_001361342.2| GA20862 [Drosophila pseudoobscura pseudoobscura]
 gi|198136656|gb|EAL25920.2| GA20862 [Drosophila pseudoobscura pseudoobscura]
          Length = 881

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 174/420 (41%), Gaps = 48/420 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +S+  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 20  QIKAISKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKMKDQGLQGVEVSDNGS 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 80  GVVEANLEAMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMAIQTRHQSTDVGL 139

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  + KI    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 140 KVELDHDGKIKKRSPCARAVGTTVTLTNLFSTLPVRRRDFTRNIKKEFAKMCQILQAYCL 199

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------ 229
               V    S    K  +  +       +    IS + G   + + V L           
Sbjct: 200 VTKGVRIICSNQTPKGAKTVVLQTHGAQDVLANISAIFGARQVADIVPLKSPFEKGQLSE 259

Query: 230 --------------------------------EITLQGYTGIPTF--NRGNANQFYVFIN 255
                                           +  L+GY         R + ++ + F+N
Sbjct: 260 VGLRAELESSADAADTTCTQFSAEDVERLNQADFRLEGYISSCRHGAGRSSRDRQFFFVN 319

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   I   Y     + + P + L +      VDVN+ P K  +   N  I+ 
Sbjct: 320 ARPCDPKNIAKVINETYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLLNNERILL 378

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
             + +S+ +   +   ST  + +  ++S       P+      A+   + +E + +  ++
Sbjct: 379 LALKKSLLETFGQT-PSTFQMQNTTIVSMLEPRPKPQPEDAGKASEEKDEEEDVPISSSQ 437



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 105/253 (41%), Gaps = 13/253 (5%)

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              + ++    +T + + A SL   +++   +  R     L    +   +++N   +E +
Sbjct: 607 QPPANYKSGELRTTIEEIADSLRKQEQQQKERRTRAKLQRLRFKSEINPNQNNKAEDELQ 666

Query: 401 ----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                  +       Q +  +II +  D L IVDQHA+ E+  FE +++   ST++  Q 
Sbjct: 667 REIAKDDFARMDIIGQFNLGFIIVKLQDDLFIVDQHASDEKYNFETLQR---STQLEYQR 723

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQL 512
           L  P+ +DL      ++++H     + G K E          + +   P     +   + 
Sbjct: 724 LTVPQCLDLTAVNEMVLIDHLPVFEKNGFKFEINHEAPATKKVRLLGKPYSRQWEFGKED 783

Query: 513 LRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIE-MNRLLREMEKNPNS 570
           + ++I  + D+         R+ ++ A+ AC  S+  G  +     M RL+ +M +    
Sbjct: 784 IDELIFMLQDAPEGTICRPSRVRSMFASRACRKSVMIGTALNRTTTMRRLITQMGEIEQP 843

Query: 571 SQCNHGRPTFIKL 583
             C HGRPT   L
Sbjct: 844 WNCPHGRPTMRHL 856


>gi|330945216|gb|EGH46889.1| DNA mismatch repair protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 162

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 85/134 (63%), Gaps = 2/134 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I  LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G 
Sbjct: 22  RIELLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGG 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++S+++P+A+ RH TSKI D  D   + + GFRGEAL SI +V+ LTL SR    +   
Sbjct: 82  GISSDDLPLALARHATSKIRDLEDLERVMSLGFRGEALASISSVARLTLTSRTRDADQAW 141

Query: 120 QIAISGEKISSVRP 133
           Q+   G  ++    
Sbjct: 142 QVETEGRDMAPRVQ 155


>gi|221056082|ref|XP_002259179.1| dna mismatch repair protein mlh1 [Plasmodium knowlesi strain H]
 gi|193809250|emb|CAQ39952.1| dna mismatch repair protein mlh1, putative [Plasmodium knowlesi
           strain H]
          Length = 865

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/273 (31%), Positives = 128/273 (46%), Gaps = 5/273 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL+E+ IN+IAAGE+I RP  A+KELIENSLDA S  +   +  GG    QI D+G 
Sbjct: 14  RIIKLAEEDINRIAAGEVIIRPCNALKELIENSLDANSRNISVHLNKGGLKSLQIIDDGD 73

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSKI++  D  +I TFGFRGEAL SI  VS+LT+ ++        
Sbjct: 74  GIHKDDLKIVCERFTTSKITNHKDIRSIKTFGFRGEALSSISHVSYLTITTKKRGAPFCY 133

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +    K +   P       GTI+   DLF+ + +RL  L +   E N   +V+++ AI
Sbjct: 134 TCSYKDGKPTQEEPTICSGKDGTIIRFDDLFYNMNSRLRAL-NHNDEYNKCLEVLQKYAI 192

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            YP V+FT     SN   ++ Q             + +              E T QG  
Sbjct: 193 HYPHVAFTCKKWLSNTVDLSTQGVGEGIGGLGGIYVIKGKRKELFRELATMEEETPQGQI 252

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
            +P          +   N  T     +   +  
Sbjct: 253 DLPHEGNSPQTGTHTETNKETYTYTEVEKKMLE 285



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 4/135 (2%)

Query: 203 GNFPERISQVIGEDFINNAVELNEK---SNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
            N    I ++ G +       +  K          G    PT+    A+    FIN R V
Sbjct: 299 NNVRLTIQKIYGRNISKELSCIFIKEKIPTFFKCYGLISNPTYGGKKASYI-FFINDRLV 357

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           +   +       YA  +  G YP V L + +    VD+NVHP K  + F     I   I 
Sbjct: 358 ESGILKRMCENQYANFLAKGNYPWVYLSIRLKYDIVDINVHPTKKEVHFLYQEEIAMLIS 417

Query: 320 QSIQKAINKKGISTS 334
           + I++ +     + S
Sbjct: 418 KRIEEFLKNFHNARS 432


>gi|67469317|ref|XP_650637.1| DNA mismatch repair protein PMS1 [Entamoeba histolytica HM-1:IMSS]
 gi|56467281|gb|EAL45250.1| DNA mismatch repair protein PMS1, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 876

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/408 (21%), Positives = 168/408 (41%), Gaps = 16/408 (3%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  + E+II ++++G ++      IKELIENS+D+ ++ +   +   G     + DNG 
Sbjct: 3   TIHIMDEEIIQKLSSGCVVIDCESVIKELIENSIDSGATIINVKLNNYGLDSLIVEDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E + +  +RHCTSKI+  ++ + + T+GFRGEAL  I  +  + ++S       G 
Sbjct: 63  GINEENMELLGKRHCTSKINNIEELTKVSTYGFRGEALYCISNMGEVEIIS-SDGKEVGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMAIA 178
            I          + V    GT + V+ LF     R   F++++  E   I  +I+  A+ 
Sbjct: 122 SI---QLTTRIKKRVTRKQGTTIIVKKLFMNNKIRREEFMRNKNKELTKIITLIQNYALM 178

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              +    +        +  QS   +  E +      D  +  + +  +   I + G   
Sbjct: 179 LTDIKMILTHQFKKTNIILLQSNGKSLKENLYNFFKGDAKDVTIPIEFEEQGIKISGIVS 238

Query: 239 IPTF-NRGNANQFYVFINGRTVQDKFILSTIRTAYA--ETIPLGRYPVVVLLLEIDPRQV 295
             T   R N+++ ++F+N R ++ K +   I   +         +YP V+L + +   + 
Sbjct: 239 NFTDKGRTNSDRIFLFVNKRPIEHKKLQQIITQQWRSLGVSFKRKYPTVILNISV--AEY 296

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           D NV P K  + F +   +   + + I    + + +  S        S         T  
Sbjct: 297 DPNVSPDKRKVFFLDEDNVITLMEKCISSVWSTELLEQSIPTINNEASQCASSVIENTSP 356

Query: 356 PK-YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            K +  S      +  ++E R  T      D      +N+ +EE E  
Sbjct: 357 TKTFNLSFLPQSTQNLIKERRQKTT---THDILGTDINNEIIEEKEKP 401



 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 76/191 (39%), Gaps = 13/191 (6%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q ++ +II +    L I+DQHAA E   +E +       K++ QTL++P  + +   +
Sbjct: 686 IGQFNKGFIIGKLGYDLYIIDQHAADEIYNYETLL---KKDKLSVQTLISPLQVSMSSDD 742

Query: 470 CALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              + E+     + G +     ++     + + ++              +++ ++     
Sbjct: 743 EIFVQENIGLFPQFGFEVTFREDKEATQRVFLTKVYHRGKNFFGANEFSELVQQLKGCRN 802

Query: 526 TYTLQDRIENI-LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL- 583
              +  + ++   AT AC  SI  G  +   EM +++  +        C HGR T   L 
Sbjct: 803 DMKVIIKKKHKIFATEACRMSIMIGDSLGREEMKKIISRLVGLNKPWHCPHGRQTIRHLW 862

Query: 584 ----KLSDIEK 590
                 ++I K
Sbjct: 863 DLRRSYNEIAK 873


>gi|169836750|ref|ZP_02869938.1| DNA mismatch repair protein mutL [candidate division TM7
           single-cell isolate TM7a]
          Length = 174

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L EK+ N IAAGE++E P+  IKE+IENSLDA+++ ++  +   G    +++DNG G
Sbjct: 4   IKILDEKVSNIIAAGEVVENPASMIKEMIENSLDAKATMIKIEVFKSGTD-VKVSDNGIG 62

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M  ++  ++V+RH TSKI +  D  N+ T+GFRGEAL SI AVS LT+ +R   +  G +
Sbjct: 63  MDKDDTLLSVERHATSKIKEKEDVFNLSTYGFRGEALSSIAAVSKLTITTRSENSPAGYR 122

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
           I   G  +     V+ N GT +EVRDLF+  PAR  FL+    E   
Sbjct: 123 IGCYGGVVRKFEEVSRNVGTEMEVRDLFYNTPARRKFLRKMSTEYGK 169


>gi|159118777|ref|XP_001709607.1| Pms1-like protein [Giardia lamblia ATCC 50803]
 gi|157437724|gb|EDO81933.1| Pms1-like protein [Giardia lamblia ATCC 50803]
          Length = 727

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 124/699 (17%), Positives = 244/699 (34%), Gaps = 123/699 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS      I A +    P   +  L+ENSLDA +S +  V+ G G     + DNG 
Sbjct: 13  RIRSLSAGDSRLILATQQFPDPYKVVSALLENSLDAGASEIAIVLEGMGLKSITVNDNGC 72

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+    +          +++   S   +   +GE++  I A+S + + S    +    + 
Sbjct: 73  GLDLSTLQALGS----CRVTTATSQPGSLNRKGESIFLISALSTVLVTSSLGDDP--YER 126

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE---QVETNLITDVIRRMAIA 178
            +S +  S+        GT V V+DL+ +IP R  +  +    +     ITD+I+  A+A
Sbjct: 127 VVSEDTSSAKHATRAGRGTTVVVQDLYRSIPVRQRYFSTPSLRKKLLLSITDLIQSYALA 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-------EI 231
              + F      +    ++  S   +  +R  ++ G D  +     + ++         +
Sbjct: 187 NYTLGFRLIVDGAVHIDVSSGS-KNSIHDRYVELFGRDVRSLVGFFSFETRLGYTVKASL 245

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT-------------AYAETIPL 278
                   P    G+A + ++  NGR +    ++  ++              A    +PL
Sbjct: 246 ACPDAGITPQSKLGHARKIFLSTNGRPILCPSLIEALQQVYARISATNVPIGALNLVLPL 305

Query: 279 GRY------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN------------FIIQ 320
           G Y      P   L ++     +D+      +++   N + I N             +  
Sbjct: 306 GTYALARSTPYDTLQMQGLSVFIDLLSEEYLAWLLRYNKSTITNGHLGRDVTSKSLIVRA 365

Query: 321 SIQKAINKKGISTS-----------------SVLSKKMISSFHQDNAPKTHLPKYATSLT 363
           + +K++N     +S                 S +S    +SF     P+     ++ + T
Sbjct: 366 AKEKSVNSPCPKSSFGVRSQQRDTVPDNIVISRVSHTKAASFFHTRKPELRQAYHSETNT 425

Query: 364 NTQEKL------------FLQENRLSTNDLLPSDDPTYSEDNDPVEESE----------- 400
           NT+                  ++ LS      + D    E      ES+           
Sbjct: 426 NTEPPPGGTPSVLGIVGFSKLQSSLSNPGPSDASDSIKVESQSCDPESKVRIGPVRRRGS 485

Query: 401 -----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                   +       Q +Q+++I+Q  +   ++DQHAAHE   F     + +   ++ Q
Sbjct: 486 ASGFRQQDFNNLKYICQYNQSFLITQLNNTFYLIDQHAAHEAKHFSDYWHNPHCY-LSRQ 544

Query: 456 TLLTPEIIDLLEGECALIMEHDE--DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
             +TP  + L   E   + E         +G +      N + I   P++  +    +  
Sbjct: 545 KTITPLKLRLRPDEKLCLEEFLSSAIFDIIGFELC-LSENYVLIFSFPSLFGQTLTEEDF 603

Query: 514 RDIIDEIIDSSTTYT--------------------------LQDRIENILATMACYGSIR 547
           R+ +  +   +  +                              RI  I A+ +C  S+R
Sbjct: 604 REYLLSLYGHTREHVESIICAKSTGSKPREKSLLCLLHNNIAPPRIRKIFASKSCKASVR 663

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            G  +      R++ ++ +      C HGRP    L L+
Sbjct: 664 LGDPLLDSTAKRIIADLARCEKPFNCPHGRPVLRFLDLA 702


>gi|145612427|ref|XP_367196.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145019589|gb|EDK03817.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 690

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 14/291 (4%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSR 111
            QITDNG G+  E++P+  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++
Sbjct: 2   LQITDNGCGIEKEDLPILCERFTTSKLQTFEDLSSIATYGFRGEALASISYIAHLTVTTK 61

Query: 112 PPQNNTGAQIAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQV 163
              ++   +    G K++          +PVA   GT + V DLF+ +P+R    +S   
Sbjct: 62  TKDSSCAWRAYYEGGKLAPTKPGQPADPKPVAGRQGTQITVEDLFYNVPSRRRAFRSFSD 121

Query: 164 ETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE 223
           E N I D++ R A+    V+F+      +   +  Q+      +RI Q+ G    N  ++
Sbjct: 122 EYNKIIDMVGRYAVHCKGVAFSCKKHGESTTSIAVQAG-ATVSDRIRQIYGSSVANELID 180

Query: 224 LNEK--SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
            +           G+      +        +FIN R V+   +  ++   YA  +P   +
Sbjct: 181 FSTSDTRWGFKASGWCTNANHS-VKKTTLLLFINNRCVESTNVKKSLEQTYAAFLPKNGH 239

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           P + L LEIDP++VDVNVHP K  + F N   I   I ++++  +     S
Sbjct: 240 PFLYLSLEIDPQRVDVNVHPTKREVNFLNENEIIQAICENLRTRLAAVDTS 290


>gi|156098528|ref|XP_001615296.1| DNA mismatch repair enzyme [Plasmodium vivax SaI-1]
 gi|148804170|gb|EDL45569.1| DNA mismatch repair enzyme, putative [Plasmodium vivax]
          Length = 867

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 5/202 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL+E+ IN+IAAGE+I RP  A+KELIENSLDA +S +   +  GG    QI D+G 
Sbjct: 22  RIIKLAEEDINRIAAGEVIIRPCNALKELIENSLDANASSISVHLNKGGLKALQIIDDGD 81

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSKI+   D  +I TFGFRGEAL SI  VS+LT+ ++  +     
Sbjct: 82  GIHKDDLQIVCERFTTSKITTHKDIRSIKTFGFRGEALSSISHVSYLTITTKKREAPFCY 141

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +    K +   P       GTI+   DLF+ + +RL  L +   E N   +V+++ AI
Sbjct: 142 TCSYKDGKPTQEEPTICSGKDGTIIRFDDLFYNMNSRLRTL-NHNDEYNKCLEVLQKYAI 200

Query: 178 AYPKVSFTFSTIKSNRYKMNFQ 199
            YP V+FT     SN   ++ Q
Sbjct: 201 HYPHVAFTCKKWLSNTVDLSTQ 222



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 5/161 (3%)

Query: 178 AYPKVSFTFST-IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK---SNEITL 233
            +P          +      N ++   N    I ++ G         +  K         
Sbjct: 276 PHPYTELERKILDEEKHLDENHKTYLNNVRLTIQKIYGRSISKELSCIFVKEKIPTFFKC 335

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            G    PT+     +    FIN R V+   +     + YA  +  G YP V L + +   
Sbjct: 336 YGLISNPTYGGKRGSYI-FFINDRLVKSGILKRMCESQYANFLAKGNYPWVYLSIRLKYD 394

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
            VDVNVHP K  + F     I   I + I+  +     + S
Sbjct: 395 IVDVNVHPTKKEVHFLYQEEIALLISKRIEDFLKNFHNARS 435


>gi|300709183|ref|XP_002996758.1| hypothetical protein NCER_100082 [Nosema ceranae BRL01]
 gi|239606082|gb|EEQ83087.1| hypothetical protein NCER_100082 [Nosema ceranae BRL01]
          Length = 573

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 130/623 (20%), Positives = 233/623 (37%), Gaps = 83/623 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI KL  +I  +I AGE+I  P   +KELIENS+DAES+ +   ++    +  ++ DNG 
Sbjct: 3   KITKLPPEIQKRICAGEVIVSPYNVLKELIENSIDAESTFISINVSKDNLN-IEVHDNGH 61

Query: 62  GMTSEEIPMAVQRHCTSKISDDF-SNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           G+  E+       H TSK S+      + FGFRGEAL SI  +SHLT+ S+      G +
Sbjct: 62  GIEEEDFKNLALAHHTSKFSNSTNYGENFFGFRGEALSSIRCISHLTIKSKVENKELGYE 121

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                    S++P++MN GT + ++ LF+    R      +      ++++    AI  P
Sbjct: 122 ---RNFTEDSLKPISMNTGTSIYIKYLFYNNKIREKCFHKKLSVYKSMSELANIFAIKNP 178

Query: 181 KVSF-----TFSTIKSNRYKMNFQS-----------------TNGNFPERISQVIGEDFI 218
            + F     T S    +  K+++ S                    +  + I++   +   
Sbjct: 179 NIKFLFNDSTCSYNDVSIDKLDYISDINYLDFIKTIKFTSELQFNDENDLITKSKSKQIG 238

Query: 219 NNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
                 + +            PT     + QF +FIN R V  + I S I   Y+  +P 
Sbjct: 239 TIYQISSLRYYSNKFITLIFTPTMINFKSFQFILFINNRLVTSQSIKSFIGKIYSNILPK 298

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
           GRYP + L + I    +DVNVHP+K  +       + N +   ++  +N+          
Sbjct: 299 GRYPFIYLEIRIPSEYIDVNVHPSKKEVLLDYEDELLNVLGVILEMGLNE---------- 348

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR----LSTNDLLPSDDPTYSEDND 394
                        +T+    + S       ++ + N     L +         +  +  +
Sbjct: 349 -----------PKETYKGGISNSNVYESNIIYKEYNTLLDCLPSQTTCEYKLLSIQKLKN 397

Query: 395 PVEESEATHYQLGIACA--QIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKI 452
            + E + +  Q  +      I    ++ Q    L+  +  +    LI+     +F +   
Sbjct: 398 EIVEIDKSFIQDLVYVGTANIPDINLLVQYNQYLMKCNLTSLIPHLIYHFFLFNFGNFTY 457

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
           +S  + +                  + L     K E    N      +P      NI   
Sbjct: 458 SSCCIKSKIK----------DDTLKKMLQEY-FKIEIDDNNNFI--HVP------NIGDY 498

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + D+ +    +      +     I + + C   I    ++     + L + ++   +  Q
Sbjct: 499 IGDVKEWENFNIENKIEEKVFREIFSKL-CK--IYRNLELNRQSFSTLKKYLKCTKDVLQ 555

Query: 573 CNHGRPTFIKL-KLSDIEKLFGR 594
                 TF KL  L D+ K F R
Sbjct: 556 ------TFTKLKSLKDLYKCFER 572


>gi|74004986|ref|XP_855680.1| PREDICTED: similar to PMS1 protein homolog 1 (DNA mismatch repair
           protein PMS1) isoform 2 [Canis familiaris]
          Length = 891

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 191/516 (37%), Gaps = 72/516 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KEL+ENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELLENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAIDAPVMAVKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V V  LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDGSGHIISQKPSHLGQGTTVTVLKLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P++   F   K                     +    F+      +            
Sbjct: 182 LKPELRIVFIHNK---------------------IYLSGFLPKHDVDH------------ 208

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
              + +    +    FIN R V  K IL  IR  Y           YP+  L +++    
Sbjct: 209 SSTSLSTPERSFI--FINNRPVHQKDILKLIRHYYNLKCLKEASRLYPIFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---------- 344
           VDVN+ P KS +  +N   +   +   +         + S   +K  +SS          
Sbjct: 267 VDVNITPDKSQVLIQNKEAVLIALENLMTTCYGSLPSTNSYENNKTDVSSADMVVSNTTE 326

Query: 345 ----FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
               F++  +   + P   TS    Q  +   ++  +TN  L +        +D      
Sbjct: 327 TDVLFNKMESSGNNYPNVDTSAIPFQNDVCNDKSGKNTNYCLNNQINVDDHCDDHFNSEN 386

Query: 401 ATHYQLGIACAQ------IHQNYIISQTTDGLVIVD-QHAAHERLIFEKMRQDFNSTKIT 453
           +   +   +  Q      +       + ++   +V  +H   E       + + +  +  
Sbjct: 387 SNIDKNTRSIFQEIPMNNLSCEDAQKECSETCFVVSVKHTQSENGN----KSNRDENRKN 442

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
            +  +  + +++   + +         + +G   E 
Sbjct: 443 EEGAVPEKPLEISADDWSKGNTLK---NSMGENIEP 475


>gi|17562796|ref|NP_505933.1| PMS (Post Meiotic Segregation) family member (pms-2)
           [Caenorhabditis elegans]
 gi|3876842|emb|CAA98478.1| C. elegans protein H12C20.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
 gi|3878022|emb|CAA18355.1| C. elegans protein H12C20.2a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 805

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 186/433 (42%), Gaps = 43/433 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI ++S+++  ++   +++   S AI++LI+NS+DA S+ ++  +   G    ++ DNG 
Sbjct: 5   KIERISKEVAERLTTAQVVVSLSSAIRQLIDNSIDAGSTIIDIRVKNNGFESIEVQDNGS 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +       + H TSK++   DF  + T GFRGEAL ++  VS +++ +R      G 
Sbjct: 65  GIEARNFDALCKPHSTSKLTQFSDFDKLATLGFRGEALNALCTVSSVSIFTRASDTEIGT 124

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           ++       I   +  A   GT + V  LF T+P R     +S++ E   +   ++  A+
Sbjct: 125 RLTYDHSGNIICRQSAARELGTTIIVNKLFETLPVRRKELERSQKREFVKLLSTVQSFAL 184

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIG--------------------- 214
             P +    +   + +      +  G  +  + ++ + G                     
Sbjct: 185 LCPHIKILCTNNINGKKTNLICTPGGTTSIQDVVANLFGIARKIENSKIGSGLIPIQQNQ 244

Query: 215 -----EDFINNAVELNEKSNEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILST 267
                    +  +E     +   ++G+        G   +++ +V+IN R V+   + S 
Sbjct: 245 PDVEIMTIHSVPMEEMHFFDLFKIRGFVSSCEHGCGRGTSDRQFVYINNRPVEYSRVCSV 304

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           I   Y +     +YP++VL +++ P ++DVNV P K  +       +   +  S+ K   
Sbjct: 305 INDVYKQF-NKKQYPIIVLFIDVPPEKIDVNVTPDKKTVMLEKERHLLAVVRASMMKTYL 363

Query: 328 K----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTN----TQEKLFLQENRLSTN 379
           K         SSV  +++++   Q  +  + +   +++  +    T    + +++ L+T+
Sbjct: 364 KIVGSHSTVRSSVEDRRIMNLSQQSFSNASFMSSKSSTPDDFNNTTLNSTYPEDSLLNTS 423

Query: 380 DLLPSDDPTYSED 392
           DLL       S  
Sbjct: 424 DLLKQRKENRSPP 436



 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 102/270 (37%), Gaps = 9/270 (3%)

Query: 319 IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
             S     ++    +   L  +    F      + + PK   +  NT+E     E  +  
Sbjct: 530 QCSQDSQTSQNSRVSYFTLRPQQKIKFSMKLLREAYSPKTDETDDNTEEAEVSAEKDVLN 589

Query: 379 NDLLPSDDPTYSEDNDPVEES-EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                 +     +    +  S     +       Q +  +II +    L IVDQHA+ E+
Sbjct: 590 EITTKINKEENDDAERQLSRSLTKDDFSKMKIIGQFNHGFIICRLRGHLFIVDQHASDEK 649

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
             FE+++    S K+T Q L  P  +     +  +I E+    H  G   E F  N   I
Sbjct: 650 YNFERLQS---SAKLTKQPLFMPTALGFGAVQELIIRENLPIFHANGFDFE-FSENDGCI 705

Query: 498 REI----PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQ 553
           +      P +L+++     L +I+  +           RI  I A+ AC  S+  G+ + 
Sbjct: 706 KTFLTARPELLNQQLTNSDLEEILAVVSQYPNQMYRPVRIRKIFASKACRKSVMIGKPLN 765

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             EM +++R + K      C HGRPT   L
Sbjct: 766 QREMTQIIRHLAKLDQPWNCPHGRPTIRHL 795


>gi|332209582|ref|XP_003253893.1| PREDICTED: PMS1 protein homolog 1 isoform 2 [Nomascus leucogenys]
          Length = 891

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/405 (22%), Positives = 163/405 (40%), Gaps = 58/405 (14%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAIDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K                          +++  +   +  +  T     
Sbjct: 182 LKPDLRIVFVHNK-------------------------IYLSGFLPKCDADHSFT----- 211

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
                +     + ++FIN R V  K IL  IR  Y           YP+  L +++    
Sbjct: 212 -----SLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPIFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMIS 343
           VDVN+ P KS +  +N   +   +   +               NK  +S + ++  K   
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAE 326

Query: 344 S---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           +   F++  +   +     TS+   Q  +   E+  + +D L   
Sbjct: 327 TDVLFNKMESSGKNYSNVDTSIIPFQNDMHNDESGKNADDCLKHQ 371


>gi|332814962|ref|XP_003309410.1| PREDICTED: PMS1 protein homolog 1 isoform 1 [Pan troglodytes]
          Length = 893

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 177/453 (39%), Gaps = 62/453 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCVAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +    +I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGRILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K                          +++  +   +  +  T     
Sbjct: 182 LKPDLRIVFVHNK-------------------------IYLSGFLPKCDADHSFT----- 211

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
                +     + ++FIN R V  K IL  IR  Y           YPV  L +++    
Sbjct: 212 -----SLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMIS 343
           VDVN+ P KS +  +N   +   +   +               NK  +S + ++  K   
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAE 326

Query: 344 S---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPV 396
           +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y   +  +
Sbjct: 327 TDVLFNKVESSGKNYSNVDTSIIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSSEI 386

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +          +  + ++  SQT       
Sbjct: 387 SNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 419



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 29/301 (9%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R  + ++  I Q  Q ++           +  +    H+     ++ PK    L +  EK
Sbjct: 591 RYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQK-HKLKTSLSNQPKLDELLQSQIEK 649

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +  + V+  E     L         +  +  +   +++
Sbjct: 650 RRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLR--FPDAWLMTSKTEVML 707

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 708 LNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGST 767

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N + I  +   L    +  L ++I++ I++ +    
Sbjct: 768 YLSDPRLTANGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNRNAKEV 826

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKL 583
            + R   +++ +   A   S +    +   ++  ++  M+        +C HGRP F  L
Sbjct: 827 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHL 886

Query: 584 K 584
            
Sbjct: 887 T 887


>gi|298710162|emb|CBJ31872.1| postmeiotic segregation increased 2 [Ectocarpus siliculosus]
          Length = 907

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 167/459 (36%), Gaps = 51/459 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ + +  + +I +G++I   + A+KEL+ENSLDA +  VE  +   G    +++DNG 
Sbjct: 5   SIKAIDKVSVARICSGQVITDLATAVKELVENSLDAGAKHVEVKLKEFGVDLIEVSDNGS 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           G++         ++ TSK++   D + + +FGFRGEAL S+  ++   ++ +R    + G
Sbjct: 65  GVSPSNYEGLALKYHTSKLATFSDLTGVRSFGFRGEALSSLCELAGSFSVTTRTADESVG 124

Query: 119 AQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMA 176
            +       K+          GT V + ++F  +P R   F ++ + + N +   ++  A
Sbjct: 125 VKLAYGRNGKMLGKETAPRQVGTTVSISNMFEPLPVRRGEFRRNIKKQFNKLLRGMQAYA 184

Query: 177 IAYPKVSFTFSTIK-SNRYKMNFQSTNGN-FPERISQVIGEDFINNAVELNEKSNEIT-- 232
           +    V  T +  K     + +  +   N   + ++ V G  F+     ++    E    
Sbjct: 185 LISLGVRITVTNTKAKGGKQTHIGTQYNNKLDDNVTNVFGAKFLKTLSPVSICLPEEGTQ 244

Query: 233 --------------------------------------LQGYTGIPTFNRGNA--NQFYV 252
                                                 + G         G A  ++ ++
Sbjct: 245 NEEEEEEEEEEVENKKQGQQGGSVTGSGAQKAKDGERKIWGMVSKAGVGVGRADNDRQFL 304

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
           ++NGR V        +   +       + P  +L L + P   DVNV P K  I      
Sbjct: 305 YLNGRPVDLPKFTRAVSEVWRAYEM-KQKPAFILDLRLPPGTFDVNVTPDKREIFMTGEA 363

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
            + + +  ++ K        T  V   +++ +   D A  T     A +     E     
Sbjct: 364 EVLDCLKTALHKQWESSRY-TIPVNQGQLVQARLTDGAAFTLRDTAAATSPPPPEARGGA 422

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
            +    +     D     E +   +E E    +      
Sbjct: 423 SSVGVVSPGPLEDHVAAEEASGGKDEMELVSGECSKNQG 461



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 74/187 (39%), Gaps = 9/187 (4%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
           H+       Q +  ++I      L I+DQHA  E+  FE ++    +T I  Q L+ P  
Sbjct: 705 HFTQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQ---QTTTIHQQPLVRPLP 761

Query: 463 IDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREIPAILSKKNIPQLLRDIID 518
           ++    E   I+++     R G +            + I  IP     +     + ++  
Sbjct: 762 LETSASEEMTIIDNIALFERNGFRFTIDDDQPTTKKLKITAIPFSKGTQFGVDDVHELAS 821

Query: 519 EIIDSSTTYTLQD--RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
            + D++    +    +   + A+ AC  S   G+ +   +M R++ +M        C HG
Sbjct: 822 IVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHG 881

Query: 577 RPTFIKL 583
           RPT   L
Sbjct: 882 RPTMRHL 888


>gi|88861515|ref|ZP_01136129.1| DNA mismatch repair protein mutL [Pseudoalteromonas tunicata D2]
 gi|88816483|gb|EAR26324.1| DNA mismatch repair protein mutL [Pseudoalteromonas tunicata D2]
          Length = 165

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 65/161 (40%), Positives = 99/161 (61%), Gaps = 3/161 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E + NQIAAGE++ RPS  +KEL+ENS+D+ ++ +  +I   GK+  Q+ DNG G
Sbjct: 4   IKLLPENVANQIAAGEVVHRPSSVVKELLENSIDSGANLITLIIKDAGKTLIQVFDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGA 119
           M+ E++ +   RH TSKI  S+D  ++ T GFRGEAL SI +V+ ++++SR    N+ G 
Sbjct: 64  MSKEDLKICCLRHSTSKIKRSEDLYSLKTMGFRGEALSSISSVAQVSIVSRSNDKNSLGY 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
           ++ I G    S   +  N GT + V+   F    +  FLKS
Sbjct: 124 ELKIDGGSEKSFNEIICNKGTSISVKKFIFQRSCKKKFLKS 164


>gi|82594959|ref|XP_725646.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480728|gb|EAA17211.1| hMLH1 gene product-related [Plasmodium yoelii yoelii]
          Length = 885

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL ++ IN+IAAGE+I RP  A+KEL+ENSLDA S+ +   +  GG    QI D+G 
Sbjct: 17  RIIKLCKEDINRIAAGEVIIRPCNALKELVENSLDANSTNISVQLNKGGLKSVQIIDDGD 76

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSKIS   D  +I TFGFRGEAL SI  VS+LT+ ++  ++++  
Sbjct: 77  GIHKDDLYIVCERFTTSKISSHKDIRSIKTFGFRGEALASISHVSYLTITTKKRKSSSCY 136

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +    K +   P A     GTI+   DLF+ +  RL  L +   E N   DV+++ +I
Sbjct: 137 TCSYKDGKPTQKEPTACSGKDGTIIRFDDLFYNMKTRLKTL-NHNDEYNKCLDVLQKYSI 195

Query: 178 AYPKVSFTFSTIKSNRYKMNFQ 199
            YP V+FT     SN   ++  
Sbjct: 196 HYPHVTFTCKKWLSNVVDLSTY 217



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 48/135 (35%), Gaps = 4/135 (2%)

Query: 203 GNFPERISQVIGEDFINNAVELNEK---SNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
            N    I ++ G       + +             G    P++N   ++    FIN R V
Sbjct: 302 NNTKTIIQKIYGRSVSKELIPIFVNEKIPTFFKCYGLISGPSYNSKKSSYI-FFINDRLV 360

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           +   +       Y   +  G YP V L L +    VD+NVHP K  + F     I   I 
Sbjct: 361 ESNILKRACENQYNNFLGKGNYPWVYLALRLKYDIVDINVHPTKKEVHFLYQDEIATLIS 420

Query: 320 QSIQKAINKKGISTS 334
           + I++ +       S
Sbjct: 421 KKIEQVLKNINNMRS 435


>gi|172087935|emb|CAQ35203.1| truncated DNA mismatch repair protein MutL [Staphylococcus aureus
           subsp. aureus]
          Length = 151

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 3/148 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI++L   + N+IAAGE++ERPS  +KEL+EN++DA ++ +   +   G    ++ DNG 
Sbjct: 3   KIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ +E++ +   RH TSK+   +D  +I T GFRGEAL SI +V+ +TL +    N  G 
Sbjct: 63  GIEAEDLGLVFHRHATSKLDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCT-DNANGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDL 147
           +I +   +I + +P           R +
Sbjct: 122 EIYVENGEILNHKPAKAKKRNRYTCRII 149


>gi|194754970|ref|XP_001959765.1| GF11871 [Drosophila ananassae]
 gi|190621063|gb|EDV36587.1| GF11871 [Drosophila ananassae]
          Length = 919

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/419 (20%), Positives = 166/419 (39%), Gaps = 52/419 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG+
Sbjct: 25  QIKAIAKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQGVEVSDNGY 84

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 85  GVEESNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGL 144

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  E KI    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 145 KVELDHEGKIKKRTPCARGIGTTVTLSNLFVTLPVRRRDFTRNIKKEFTKMCQILQAYCL 204

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------ 229
               V    S    K  +  +    +  +    IS + G   + + V L           
Sbjct: 205 VTKGVRILCSNQTPKGAKTVVLQTHSARDVLANISSIFGARQVADLVPLKSPFEKGHLSE 264

Query: 230 --------------------------------EITLQGYTGIPTF--NRGNANQFYVFIN 255
                                           +  L+G+         R + ++ + F+N
Sbjct: 265 AGLRADLESSADAADTTLTQFSAEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVN 324

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   +   Y     + + P + L +      VDVN+ P K  +   N     
Sbjct: 325 SRPCDPKNIAKVMNEIYHRY-NVQQQPFIYLNIVTARSDVDVNLTPDKRQLLINNER--- 380

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
             I+    K         +    +   ++      PKT   +      N    +F +E 
Sbjct: 381 --ILLLALKKSLLDTFGQTPSTFQMQNTTIVSMFEPKTVKKEEKVEEVNESSNIFQEEE 437



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 21/303 (6%)

Query: 293 RQVDVNVHPAKSYIR--FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
             V++NV P                + I    +   +K+       +SK           
Sbjct: 599 STVNLNVEPPSLSQSTDVTEEDDYDDGIELPTRIEFDKEEEDPDQSMSKYASGELR---- 654

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE----ATHYQL 406
             T L + A+ +   +E+   + +R     L    +   +++N+   E +       +  
Sbjct: 655 --TSLEEIASKMKAHEEEHRERRSRAKLQRLRFKSEINPNQNNNAEAELQREIGKEDFAR 712

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +II +  D L IVDQHA  E+  FE +++      +  Q L  P+ +DL 
Sbjct: 713 MDIIGQFNLGFIIVKLEDDLFIVDQHATDEKYNFETLQRTTQ---LEYQRLTVPQSLDLT 769

Query: 467 EGECALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                ++++H     + G K E          I +   P     +   + + ++I  + D
Sbjct: 770 AVNEMVLIDHLAVFEKNGFKFEINHDAPATKKIKLLGKPHSKRWEFGKEDIDELIFMLQD 829

Query: 523 SSTTY-TLQDRIENILATMACYGSIRSGRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTF 580
           +         R+  + A+ AC  S+  G  +     M RL+ +M +      C HGRPT 
Sbjct: 830 APEGTICRPSRVRAMFASRACRKSVMIGTALNRTTTMRRLITQMGEIEQPWNCPHGRPTM 889

Query: 581 IKL 583
             L
Sbjct: 890 RHL 892


>gi|194387000|dbj|BAG59866.1| unnamed protein product [Homo sapiens]
          Length = 593

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 176/453 (38%), Gaps = 62/453 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K                          +++  +   +  +  T     
Sbjct: 182 LKPDLRIVFVHNK-------------------------IYLSGFLPKCDADHSFT----- 211

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
                +     + ++FIN R V  K IL  IR  Y           YPV  L +++    
Sbjct: 212 -----SLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMIS 343
           VDVN+ P KS +  +N   +   +   +               NK  +S + ++  K   
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAE 326

Query: 344 S---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPV 396
           +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y   +  +
Sbjct: 327 TDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSSEI 386

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +          +  + ++  SQT       
Sbjct: 387 SNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 419


>gi|195334603|ref|XP_002033967.1| GM20141 [Drosophila sechellia]
 gi|194125937|gb|EDW47980.1| GM20141 [Drosophila sechellia]
          Length = 901

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/430 (20%), Positives = 170/430 (39%), Gaps = 47/430 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ + +  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQGVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGV 145

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  + +I    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 146 KVELDHDGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V    S    K  +  +     +      IS + G     + V L     +     
Sbjct: 206 VTKGVRILCSNHTPKGAKTVVLQTHGDQEVMANISAIFGARQAADLVTLKSPFGQGQLTE 265

Query: 231 ---------------------------------ITLQGYTGIPTF--NRGNANQFYVFIN 255
                                              L G+         R + ++ + F+N
Sbjct: 266 AELRADLESGADVADTTCPQISTEDVERLNQADFQLDGFISSCRHGAGRSSRDRQFFFVN 325

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   I   Y     + + P + L +      VDVN+ P K  +   N  I+ 
Sbjct: 326 SRPCDPKNIAKVINEIYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNERILL 384

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
             + +S+         +     +  +     + N  KT  PK  +     Q +   +E+ 
Sbjct: 385 LALKKSLLDTFGHTPATFQMQNTTIVSMLEPKTNPGKTKFPKEPSKEKEDQNEEASEEDV 444

Query: 376 LSTNDLLPSD 385
            +T+     D
Sbjct: 445 PTTSTQRFMD 454



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 13/276 (4%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I       I            +  + S        T L + A+SL   +++   +  R  
Sbjct: 610 IASDEDDHIKLPTRIEFDEEMEDGLPSNFSSGELTTSLEEIASSLKVHEQQQRDRRTRTK 669

Query: 378 TNDLLPSDDPTYSEDN----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
              L    +   +++N    +   E +   +       Q +  +II +  D L IVDQHA
Sbjct: 670 LQRLRFKTEINPNQNNSAEAELQREIDKEDFARMEIIGQFNLGFIIVKLEDDLFIVDQHA 729

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP- 492
             E+  FE +++      +  Q L  P+ ++L      +++ H +   + G K E     
Sbjct: 730 TDEKYNFETLQRTTQ---LEYQRLAVPQNLELTAVNEMVLLNHIDVFEKNGFKFEVDHEA 786

Query: 493 ---NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRS 548
                + +   P     +   + + ++I  + D+         R+  + A+ AC  S+  
Sbjct: 787 PATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRACRKSVMI 846

Query: 549 GRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
           G  +     M RL+ +M +      C HGRPT   L
Sbjct: 847 GTALSRNTTMRRLITQMGEIEQPWNCPHGRPTMRHL 882


>gi|167377899|ref|XP_001734578.1| DNA mismatch repair protein pms2 [Entamoeba dispar SAW760]
 gi|165903783|gb|EDR29212.1| DNA mismatch repair protein pms2, putative [Entamoeba dispar
           SAW760]
          Length = 891

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 172/399 (43%), Gaps = 21/399 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  ++E+II ++++G ++      IKEL+EN++D+ ++ +   +   G     + DNG 
Sbjct: 3   TIHIMNEEIIQKLSSGCVVIDCESVIKELVENAIDSGATIINIKLNNYGLDSIIVEDNGS 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E + +  +RHCTSKI+  ++ + ++T+GFRGEAL  I  +  + ++S       G 
Sbjct: 63  GINEENMELLGKRHCTSKINNIEELTKVNTYGFRGEALYCISNMGEVEIIS-SEGKEIGN 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRMAIA 178
            I          + V    GT + V+ LF     R   F++++  E + I  +I+  A+ 
Sbjct: 122 SI---QLTTRIKKRVTRKQGTTIIVKKLFMNNKIRREEFMRNKNKELSKIITLIQNYALM 178

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              +             +  QS   +  E +  +   D  +  + +  + N I + G   
Sbjct: 179 LINIKIILIHQFKKSNNILLQSNGKSLKENLYNLFKIDAKDVTIPIEIEENGIKISGIVS 238

Query: 239 IPTF-NRGNANQFYVFINGRTVQDKFILSTIRTAYA--ETIPLGRYPVVVLLLEIDPRQV 295
                 R N ++ ++F+N R ++ K +   I   +         +YP V+L + +   + 
Sbjct: 239 NFIDKGRTNNDRIFLFVNKRPIEHKKLQQIIIQQWRSLGISFKRKYPTVILNILV--DEY 296

Query: 296 DVNVHPAKSYIRFRNPTIIRNF----IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
           D NV P K  + F N   +       I       + ++ I T +       SS  ++ +P
Sbjct: 297 DPNVSPDKRKVFFINEDNVLKLMEKCISSVWSTELLEQNIPTINNDISYSTSSIIENTSP 356

Query: 352 KTH-----LPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
                   LP+   +L N +++  + +N     D+  + 
Sbjct: 357 IKSFNISFLPQSTQNLINQRKQKIISQNIFDKEDINNNQ 395



 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 79/191 (41%), Gaps = 13/191 (6%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             Q ++ +II +    L I+DQHAA E   +E +       K++ QTL++P  + +   +
Sbjct: 701 IGQFNKGFIIGKLGYDLYIIDQHAADEIYNYETLL---KKDKLSVQTLISPLQVTMSCDD 757

Query: 470 CALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              + E+ E   + G +     ++     + + ++              +++ ++     
Sbjct: 758 EIFVQENIELFTQFGFEVIFREDKEVTQRVFLTKVYHRGKNFFGINEFSELVQQLKGCRN 817

Query: 526 TYTLQDRIENI-LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL- 583
              +  + ++   AT AC  SI  G  +   EM ++++ + +      C HGR T   L 
Sbjct: 818 DMKVIVKKKHKIFATEACRMSIMIGDSLGREEMKKIIKRLVELNKPWHCPHGRQTIRHLW 877

Query: 584 ----KLSDIEK 590
                 ++I K
Sbjct: 878 DLRRSFNEISK 888


>gi|48526026|gb|AAT45205.1| MutL [Burkholderia cenocepacia]
          Length = 156

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 79/120 (65%), Gaps = 2/120 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +++I+QIAAGE++ERP+  +KEL+EN++DA ++ +  V+  GG     ITD+G G
Sbjct: 23  IQPLPDQLISQIAAGEVVERPASVVKELLENAMDAGATTLRIVLEEGGVKRISITDDGCG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+ +A+ RH TSKI   ++   + T GFRGEAL SI +V+ +++ SR        +
Sbjct: 83  IPPDELALALMRHATSKIRSLEELEAVATLGFRGEALASIASVAEMSITSRTADAAHAMK 142


>gi|17863002|gb|AAL39978.1| SD07911p [Drosophila melanogaster]
          Length = 895

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 164/424 (38%), Gaps = 52/424 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ + +  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGV 145

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  E +I    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 146 KVELDHEGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V    S    K  +  +     +      IS + G     + V L     +     
Sbjct: 206 VTKGVRILCSNHTPKGAKTIVLQTHGDQEVMANISAIFGARQAADLVPLKSPFGQGQLTE 265

Query: 231 ---------------------------------ITLQGYTGIPTF--NRGNANQFYVFIN 255
                                              L+G+         R + ++ + F+N
Sbjct: 266 AELRADLESGADLADTTSPQISTEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVN 325

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   +   Y     + + P + L +      VDVN+ P K  +   N     
Sbjct: 326 SRPCDPKNIAKVMNEVYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNER--- 381

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
             I+    K         +    +   ++      PKT+  K      +++E    + + 
Sbjct: 382 --ILLLALKKSLLDTFGQTPATFQMQNTTIVSMLEPKTNSGKTKFPKESSKEDQHEEVSE 439

Query: 376 LSTN 379
               
Sbjct: 440 EDVP 443



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 13/276 (4%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I       I            ++ + S        T L + A+SL   +++   +  R  
Sbjct: 604 IASDEDDHIELPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQRDRRTRTK 663

Query: 378 TNDLLP----SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
              L      + +   S + +   E +   +       Q +  +II +  D L IVDQHA
Sbjct: 664 LQRLRFKTEINPNQNTSAEAELQREIDKEDFARMEIIGQFNLGFIIVKLEDDLFIVDQHA 723

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP- 492
             E+  FE +++      +  Q L  P+ ++L      +++ H +   + G K E     
Sbjct: 724 TDEKYNFETLQRTTQ---LEYQRLAVPQNLELTAVNEMVLLNHIDVFEKNGFKFEVDHEA 780

Query: 493 ---NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRS 548
                + +   P     +   + + ++I  + D+         R+  + A+ AC  S+  
Sbjct: 781 PATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRACRKSVMI 840

Query: 549 GRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
           G  +     M RL+ +M +      C HGRPT   L
Sbjct: 841 GTALSRNTTMKRLITQMGEIEQPWNCPHGRPTMRHL 876


>gi|195488586|ref|XP_002092377.1| GE14157 [Drosophila yakuba]
 gi|194178478|gb|EDW92089.1| GE14157 [Drosophila yakuba]
          Length = 899

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 90/433 (20%), Positives = 169/433 (39%), Gaps = 55/433 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIAKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQGVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGV 145

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  E +I    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 146 KVELDHEGRIKKRSPCARGVGTTVVLANLFTTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V    S    K  +  +     +      IS + G       V L     +     
Sbjct: 206 VTKGVRILCSNHTPKGAKTVVLQTHGDQEVMANISAIFGARQATELVPLKSPFGQGQLSE 265

Query: 231 ---------------------------------ITLQGYTGIPTF--NRGNANQFYVFIN 255
                                              L+G+         R + ++ + F+N
Sbjct: 266 AELRADLESCADVADTTCPQICAEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVN 325

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   +   Y     + + P + L +      VDVN+ P K  +   N     
Sbjct: 326 SRPCDPKNIAKVMNEVYHRY-NVQQQPFIYLNIVTARSDVDVNLTPDKRQLLINNER--- 381

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY---ATSLTNTQEKLFLQ 372
             I+    K         +    +   ++      PKT+  K      S  N Q K   +
Sbjct: 382 --ILLLALKKSLLDTFGQTPATFQMQNTTILSMLEPKTNPNKTKFLEDSSNNNQNKEASE 439

Query: 373 ENRLSTNDLLPSD 385
           E+  +T+     D
Sbjct: 440 EDVPTTSTQRFMD 452



 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 15/295 (5%)

Query: 301 PAKSYIRFRNPTIIRNF--IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           PAK   +  + T +     I       I            ++ + S        T L + 
Sbjct: 589 PAKINPQPPSSTQLSEETDIGSDEDDHIELPTRIEFDEEVEEGMPSNFSSGEITTSLEEI 648

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLP----SDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
            TSL   +++   +  R     L      + +  +S + +   E +   +       Q +
Sbjct: 649 ETSLKAHEQQQRDRRARAKLQRLRFKTEINPNQNHSAEAELQREIDKEDFARMEIIGQFN 708

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II +  D L IVDQHA  E+  FE +++      +  Q L  P+ ++L      +++
Sbjct: 709 LGFIIVKLEDDLFIVDQHATDEKYNFETLQRTTQ---LEYQRLTVPQSLELTAVNEMVLL 765

Query: 475 EHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TL 529
            H +   + G K     E      + +   P     +   + + ++I  + D+       
Sbjct: 766 NHIDVFEKNGFKFQVDHEAPATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICR 825

Query: 530 QDRIENILATMACYGSIRSGRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R+  + A+ AC  S+  G  +     M RL+ +M +      C HGRPT   L
Sbjct: 826 PSRVRAMFASRACRKSVMIGTALNRNTTMRRLITQMGEIEQPWNCPHGRPTMRHL 880


>gi|195583626|ref|XP_002081618.1| GD25619 [Drosophila simulans]
 gi|194193627|gb|EDX07203.1| GD25619 [Drosophila simulans]
          Length = 713

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 167/427 (39%), Gaps = 47/427 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ + +  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQGVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLMGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGV 145

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  + +I    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 146 KVELDHDGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V    S    K  +  +     +      IS + G     + V L     +     
Sbjct: 206 VTKGVRILCSNHTPKGAKTVVLQTHGDQEVMANISAIFGARQAADLVPLKSPFGQGQLTE 265

Query: 231 ---------------------------------ITLQGYTGIPTF--NRGNANQFYVFIN 255
                                              L G+         R + ++ + F+N
Sbjct: 266 AELRADLEYGADVADTTCPQISTEDVERLNQADFQLDGFISSCRHGAGRSSRDRQFFFVN 325

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   +   Y     + + P + L +      VDVN+ P K  +   N  I+ 
Sbjct: 326 SRPCDPKNIAKVMNEIYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNERILL 384

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
             + +S+         +     +  +     + N  KT  PK ++     +E        
Sbjct: 385 LALKKSLLDTFGHTPATFQMQNTTIVSMLEPKTNPGKTKFPKESSKEDQNEEASEEDVPT 444

Query: 376 LSTNDLL 382
            ST   +
Sbjct: 445 TSTQRFM 451


>gi|70950802|ref|XP_744693.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56524752|emb|CAH80116.1| hypothetical protein PC000722.03.0 [Plasmodium chabaudi chabaudi]
          Length = 344

 Score =  217 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 78/202 (38%), Positives = 116/202 (57%), Gaps = 5/202 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I KL ++ IN+IAAGE+I RP  A+KEL+ENSLDA S+ +   +  GG    QI D+G 
Sbjct: 17  RIIKLCKEDINRIAAGEVIIRPCNALKELVENSLDANSTNISVQLNKGGLKSVQIIDDGD 76

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  +R  TSKIS   D  +I TFGFRGEAL SI  VS+LT+ ++  ++ +  
Sbjct: 77  GIHKDDLYIVCERFTTSKISSHKDIRSIKTFGFRGEALASISHVSYLTITTKKRKSLSCY 136

Query: 120 QIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +    K +   P A     GTI+   DLF+ +  RL  L +   E N   DV+++ +I
Sbjct: 137 TCSYKDGKPTQKEPTACSGKDGTIIRFDDLFYNMKTRLKTL-NHNDEYNKCLDVLQKYSI 195

Query: 178 AYPKVSFTFSTIKSNRYKMNFQ 199
            YP V+FT     SN   ++  
Sbjct: 196 HYPHVTFTCKKWLSNVVDLSTY 217


>gi|77818871|gb|ABB04020.1| rhabdomyosarcoma antigen MU-RMS-40.10E [Homo sapiens]
          Length = 659

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 176/453 (38%), Gaps = 62/453 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K                          +++  +   +  +  T     
Sbjct: 182 LKPDLRIVFVHNK-------------------------IYLSGFLPKCDADHSFT----- 211

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
                +     + ++FIN R V  K IL  IR  Y           YPV  L +++    
Sbjct: 212 -----SLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMIS 343
           VDVN+ P KS +  +N   +   +   +               NK  +S + ++  K   
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAE 326

Query: 344 S---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPV 396
           +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y   +  +
Sbjct: 327 TDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSSEI 386

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +          +  + ++  SQT       
Sbjct: 387 SNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 419


>gi|58736979|dbj|BAD89398.1| PMS1 nirs variant 1 [Homo sapiens]
          Length = 667

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 176/453 (38%), Gaps = 62/453 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K                          +++  +   +  +  T     
Sbjct: 182 LKPDLRIVFVHNK-------------------------IYLSGFLPKCDADHSFT----- 211

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
                +     + ++FIN R V  K IL  IR  Y           YPV  L +++    
Sbjct: 212 -----SLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMIS 343
           VDVN+ P KS +  +N   +   +   +               NK  +S + ++  K   
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAE 326

Query: 344 S---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPV 396
           +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y   +  +
Sbjct: 327 TDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSSEI 386

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +          +  + ++  SQT       
Sbjct: 387 SNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 419


>gi|195120548|ref|XP_002004786.1| GI20104 [Drosophila mojavensis]
 gi|193909854|gb|EDW08721.1| GI20104 [Drosophila mojavensis]
          Length = 380

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 151/360 (41%), Gaps = 49/360 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   ++AIKEL+ENS+DA ++ +E  +   G    ++ DNG 
Sbjct: 20  QIKAIAKDTVHKICSGQVVLSLAVAIKELVENSIDAGATLIEIKLKEQGLQGVEVCDNGS 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S +T+ +R    N   
Sbjct: 80  GVEESNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMTIQTRHKSTNVAI 139

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           +I +  E +I    P A   GT V + +LF T+P R     ++ + E N +  +++   +
Sbjct: 140 KIELDHEGRIKKRSPCARGVGTTVGLSNLFGTLPVRRRDFTRNIKKEFNKMCQILQAYCL 199

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGE-------------------- 215
               V    S    K  +  +       +    IS V G                     
Sbjct: 200 VTRNVRIICSNQSAKGAKSVILQTHGAADVLANISAVFGARQVADLVPLKSPLEAGQLSE 259

Query: 216 -------------------DFINNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFI 254
                              +F    VE   +     L+GY         R   ++ + F+
Sbjct: 260 AGLREALQTASDAAETTCVEFNAEDVERLNE-AGFELEGYISSCRHGAGRSTRDRQFFFV 318

Query: 255 NGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           N R  + K I   +   Y     + + P + L +     +VDVN+ P K  +   N  I+
Sbjct: 319 NSRPCEPKNIAKVMNDMYRRY-NVQQQPFIYLNIVTSRAEVDVNLTPDKRQLLLNNERIL 377


>gi|255718257|ref|XP_002555409.1| KLTH0G08624p [Lachancea thermotolerans]
 gi|238936793|emb|CAR24972.1| KLTH0G08624p [Lachancea thermotolerans]
          Length = 906

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 171/444 (38%), Gaps = 35/444 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +++  +++I +G++I   + A+KEL++NS+D+ + +V       G    + +DNG 
Sbjct: 4   KIAAINDADVHRITSGQVIIDLASAVKELLDNSIDSGADQVVCTFKNYGLESLECSDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +       +H TSKIS  +D S + T GFRGEAL S+ A++ L + +         
Sbjct: 64  GVPEDSYESLALKHYTSKISSFEDVSQVTTLGFRGEALSSLAAIASLVVTTTTQPPKAAR 123

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
                  ++      + N GT V V  LF  +P R   F ++ + + +    +++   I 
Sbjct: 124 LEYNFKGELVKKTVTSRNKGTTVHVSQLFNNLPVRKKEFTRNHKRQFSKCIMLLQAYTII 183

Query: 179 YPKVSFTFST---IKSNRYKMNFQSTNGNFPERI----------------------SQVI 213
             ++  +             ++     G     I                       +  
Sbjct: 184 QERMKISVWHITGNGRRSLVLSSTKDRGIPKRIIGVFGSSAMQGLSDIHLTLQISPKRSF 243

Query: 214 GEDFINNAVELNEKSNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTA 271
                   V        I + GY    TF       ++ +++IN R V    +  +    
Sbjct: 244 SSQLSGAEVSSGSPEYIIVVSGYISRNTFGCGRTAKDRQFIYINQRPVIYPSLAKSCNEV 303

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI--QKAINKK 329
           Y     + +YPV VL  E+ P  +DVNV P K  +     + + +   +++    +  + 
Sbjct: 304 YRTHNNV-QYPVFVLNFELSPEFIDVNVTPDKRTVLLHAESSVIDAFREALADYYSEQEM 362

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
            +  S+  + K+ +   +    K  +   +  L         +++R + +  + +     
Sbjct: 363 VLPISNTHTVKVDNDNTEPKVAKPGVM--SQELDGEYNNDVGEDSRQTLDGRIDTGPYRE 420

Query: 390 SEDNDPVEESEATHYQLGIACAQI 413
           +       ESE       ++ A++
Sbjct: 421 NGPKTESPESEEREALFDLSNAKV 444



 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 14/195 (7%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTD----GLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
             + ++      Q +  +I+          L I+DQHA+ E+  FEK++    +T   SQ
Sbjct: 700 SKSDFKKMEIVGQFNLGFILVTRRKSGKFDLFIIDQHASDEKYNFEKLQ---KNTVFKSQ 756

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN----AIAIREIPAILSKKNIPQ 511
            LL P+I+++   +  ++M++ E   + G K E          + +  +P          
Sbjct: 757 KLLAPQIVEMSIIDELVMMDNLEVFEKNGFKLEIDEEQPQGCRVKVVSLPVSRKTLFDMN 816

Query: 512 LLRDIIDEIIDSS---TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
            L ++I  + +S           +I  + A  AC  SI  GR +    M R++R + +  
Sbjct: 817 DLHELIHLVKESDGLSKDSIRCSKIRAMHAMRACRSSIMVGRPLVKKSMLRVVRNLSELD 876

Query: 569 NSSQCNHGRPTFIKL 583
               C HGRPT   L
Sbjct: 877 KPWNCPHGRPTMRHL 891


>gi|189458896|ref|NP_001121615.1| PMS1 protein homolog 1 isoform b [Homo sapiens]
 gi|58736991|dbj|BAD89404.1| PMS1 nirs variant 7 [Homo sapiens]
          Length = 893

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 99/453 (21%), Positives = 176/453 (38%), Gaps = 62/453 (13%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K                          +++  +   +  +  T     
Sbjct: 182 LKPDLRIVFVHNK-------------------------IYLSGFLPKCDADHSFT----- 211

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
                +     + ++FIN R V  K IL  IR  Y           YPV  L +++    
Sbjct: 212 -----SLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMIS 343
           VDVN+ P KS +  +N   +   +   +               NK  +S + ++  K   
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAE 326

Query: 344 S---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPV 396
           +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y   +  +
Sbjct: 327 TDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSSEI 386

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
              +          +  + ++  SQT       
Sbjct: 387 SNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 419



 Score = 38.9 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 29/301 (9%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R  + ++  I Q  Q ++           +  +    H+     ++ PK    L +  EK
Sbjct: 591 RYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQK-HKLKTSLSNQPKLDELLQSQIEK 649

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +  + V+  E     L         +  +  +   +++
Sbjct: 650 RRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLR--FPDAWLMTSKTEVML 707

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 708 LNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGST 767

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N + I  +   L    +  L ++I++ I++ +    
Sbjct: 768 YLSDPRLTANGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNRNAKEV 826

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKL 583
            + R   +++ +   A   S +    +   ++  ++  M+        +C HGRP F  L
Sbjct: 827 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHL 886

Query: 584 K 584
            
Sbjct: 887 T 887


>gi|326334738|ref|ZP_08200944.1| DNA mismatch repair protein MutL [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693051|gb|EGD34984.1| DNA mismatch repair protein MutL [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 142

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 58/138 (42%), Positives = 89/138 (64%), Gaps = 2/138 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + + NQIAAGE+I+RP+ A+KEL+EN++DA++++++  +   G++  Q+ DNG G
Sbjct: 5   IRLLPDNVANQIAAGEVIQRPASAVKELLENAIDAQATQIKLFLKDAGRTLVQVVDNGTG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           M+  +  +A +RH TSKI   DD  ++HT GFRGEAL SI A++ + L++       G  
Sbjct: 65  MSPTDARLAFERHATSKIRTADDLFSLHTKGFRGEALASIAAIAQVELITSEEGQEIGTA 124

Query: 121 IAISGEKISSVRPVAMNP 138
           I I G KI    P+  N 
Sbjct: 125 ITIEGNKIIDQYPIVTNK 142


>gi|17136970|ref|NP_477023.1| Pms2 [Drosophila melanogaster]
 gi|7303075|gb|AAF58142.1| Pms2 [Drosophila melanogaster]
          Length = 899

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 167/412 (40%), Gaps = 47/412 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ + +  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    + G 
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGV 145

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  E +I    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 146 KVELDHEGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE----- 230
               V    S    K  +  +     +      IS + G     + V L     +     
Sbjct: 206 VTKGVRILCSNHTPKGAKTIVLQTHGDQEVMANISAIFGARQAADLVPLKSPFGQGQLTE 265

Query: 231 ---------------------------------ITLQGYTGIPTF--NRGNANQFYVFIN 255
                                              L+G+         R + ++ + F+N
Sbjct: 266 AELRADLESGADLADTTSPQISTEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVN 325

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   +   Y     + + P + L +      VDVN+ P K  +   N  I+ 
Sbjct: 326 SRPCDPKNIAKVMNEVYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNERILL 384

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
             + +S+     +   +     +  +     + N+ KT  PK ++     +E
Sbjct: 385 LALKKSLLDTFGQTPATFQMQNTTIVSMLEPKTNSGKTKFPKESSKDDQHEE 436



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 13/276 (4%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I       I            ++ + S        T L + A+SL   +++   +  R  
Sbjct: 608 IASDEDDHIELPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQRDRRTRTK 667

Query: 378 TNDLLP----SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
              L      + +   S + +   E +   +       Q +  +II +  D L IVDQHA
Sbjct: 668 LQRLRFKTEINPNQNTSAEAELQREIDKEDFARMEIIGQFNLGFIIVKLEDDLFIVDQHA 727

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP- 492
             E+  FE +++      +  Q L  P+ ++L      +++ H +   + G K E     
Sbjct: 728 TDEKYNFETLQRTTQ---LEYQRLAVPQNLELTAVNEMVLLNHIDVFEKNGFKFEVDHEA 784

Query: 493 ---NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRS 548
                + +   P     +   + + ++I  + D+         R+  + A+ AC  S+  
Sbjct: 785 PATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRACRKSVMI 844

Query: 549 GRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
           G  +     M RL+ +M +      C HGRPT   L
Sbjct: 845 GTALSRNTTMRRLITQMGEIEQPWNCPHGRPTMRHL 880


>gi|301766590|ref|XP_002918706.1| PREDICTED: PMS1 protein homolog 1-like isoform 2 [Ailuropoda
           melanoleuca]
          Length = 891

 Score =  216 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 155/414 (37%), Gaps = 44/414 (10%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ ++  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  V+ + + +R   +N   Q 
Sbjct: 62  KAVDTPVMAIKYYTSKIGSHEDLENLTTYGFRGEALGSICCVAEVLITTRTASDNFSTQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            + G   I S +P  +  GT V    LF  +P R  F    K  + E   + D++    I
Sbjct: 122 VLDGNGHIISQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F                      +S  + +   ++                 
Sbjct: 182 LKPDLRIVFIHN----------------KIYLSGFLPKRDADH----------------- 208

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQ 294
            + + +    +    FIN R V  K IL  IR  Y           YP+  L +++    
Sbjct: 209 SLTSLSTPERSFI--FINSRPVHQKDILKLIRQYYTLKCLKESTRLYPIFFLKIDVPTAD 266

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           VDVN+ P KS +  +N   +   +   +         + S   +K  +SS        T 
Sbjct: 267 VDVNLTPDKSQVLLQNKESVLIALENLMTTCYGSLPSTNSYENNKTDVSSADMVVNNTTE 326

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                  + ++       +  +        DD +    N  +            
Sbjct: 327 TDVLFNKMESSGNNYANVDTSVIPFQNDVHDDRSGKNTNYCLNPQIHVDDHYDE 380


>gi|195028197|ref|XP_001986963.1| GH21651 [Drosophila grimshawi]
 gi|193902963|gb|EDW01830.1| GH21651 [Drosophila grimshawi]
          Length = 903

 Score =  216 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 47/356 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   ++AIKEL+ENS+DA ++ +E  +   G    ++ DNG 
Sbjct: 20  QIKAIAKDTVHKICSGQVVLSLAVAIKELVENSIDAGATLIEVKLRDQGLQGVEVCDNGS 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S +T+ +R    +   
Sbjct: 80  GVEEANLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMTIQTRHKSTDVAL 139

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           +I +  E KI    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 140 KIELDHEGKIKKRSPCARGVGTTVTLSNLFATLPVRRRDFTRNIKKEFTKMCQILQAYCL 199

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE------------ 223
               V    S    K  +  +       +    IS V G   + + V             
Sbjct: 200 VTTSVRIICSNHTPKGVKSVVLQTHGAADVLANISAVFGARQVADLVPLKSPFEAGELSE 259

Query: 224 --------------------------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFIN 255
                                           +  L+GY         R   ++ + F+N
Sbjct: 260 ECLRAELQSTSDVAETTCTQFSSEDVQRLNQADFQLEGYISSCRHGAGRSARDRQFFFVN 319

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP 311
            R  + K I   +   Y     + + P + L +     +VDVN+ P K  +   N 
Sbjct: 320 ARPCEPKSIAKIMNDVYHRY-NVQQQPFIYLNIVTARDEVDVNLTPDKRQLLLNNE 374



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 9/206 (4%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           + +   + + +  +E     ++      Q +  +II +  D L IVDQHAA E+  FE +
Sbjct: 671 NPNQNQNAEAELQKEITKADFERMQIIGQFNLGFIIVKLDDDLFIVDQHAADEKYNFETL 730

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIRE 499
           ++      +  Q L  P+ ++L      ++ ++     + G K E          + +  
Sbjct: 731 QRTTQ---LEHQRLTVPQTLELTAVNEMILQDYLPVFEKNGFKFEINADAPATQKVRLLG 787

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIE-M 557
            P   + +   + + ++I  + D+         RI  + A+ AC  S+  G+ +     M
Sbjct: 788 KPYSKNWEFGKEDIDELIFMLQDAPEGTICRPSRIRAMFASRACRKSVMIGKALHRSTTM 847

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
            RL+ +M +      C HGRPT   L
Sbjct: 848 RRLITQMGEIEQPWNCPHGRPTMRHL 873


>gi|164423658|ref|XP_962690.2| hypothetical protein NCU08020 [Neurospora crassa OR74A]
 gi|157070185|gb|EAA33454.2| hypothetical protein NCU08020 [Neurospora crassa OR74A]
          Length = 894

 Score =  216 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 160/403 (39%), Gaps = 31/403 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +    I+QI +G++I       KEL+EN+LDA ++ ++      G    ++ DNG G
Sbjct: 7   IKAIDPSTIHQIQSGQVIVDLCSVAKELVENALDAGATTIDVRFKNQGLDSIEVQDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRP-PQNNTGA 119
           ++S        +H TSK+S  DD S + TFGFRGEAL S+ A+SH T+++    +     
Sbjct: 67  ISSSNYESIALKHYTSKLSNYDDLSTLQTFGFRGEALSSLCALSHFTIVTCTQKEAPKAT 126

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           ++      K+ S   V+   GT V V +LF ++P R     ++ + E   + +++ + A 
Sbjct: 127 KLEFETSGKLKSTSVVSGQRGTTVSVENLFKSLPVRRRELERNIKREWGKVVNLLNQYAC 186

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQG 235
               V FT S   +   +M   ST GN    E I  V G   +   + ++ +        
Sbjct: 187 IQTSVKFTVSQQPTKGKRMVLFSTKGNPTTRENIINVFGIKTMTALIAMDLRLQL----- 241

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               PT     A       +  T  ++     +     E +         L      R  
Sbjct: 242 ---KPTNTGLLAKMTAQDDDAMTEGNRATRHAVNEDSDEAVSDEDNAPNTLSTGPKTRAG 298

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
                PA +                     + +     S    + + ++ + +++ +   
Sbjct: 299 PCESTPANTQA----------------SNLLARWLERKSEARKQPVSAAINANDSRREKS 342

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           P      +  + + +  ++  S  +   ++D  + E+N   ++
Sbjct: 343 PVEKEPQSPKRARRYDTKDAESDAEQDTAEDNEHVENNSMTQD 385



 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 28/258 (10%)

Query: 351 PKTHLPKYATSLTNTQEKLFLQEN--------------RLSTNDLLPSDDPTYSEDNDPV 396
              HLP+  T+ ++TQE    +                ++S +D               +
Sbjct: 576 WAKHLPRAGTASSSTQESSDGKPTIGLDAADAEEKLSLKISKSDFAKMKIVGQFNLGFII 635

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
              EA+                 +Q  D L I+DQHA+ E+  FE+++       + SQ 
Sbjct: 636 AVREASSSHSLEHSPSQQSPAATTQEDDELFIIDQHASDEKYNFERLQSTTT---VQSQR 692

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGI--KAERFGPNAI----AIREIPAILSKKNIP 510
           L+ P+ + L   E  +I+EH   L   G   + +  G +A+     +  +P         
Sbjct: 693 LVQPKPLTLTAVEEEIILEHLPALAANGFQVRVDTSGESAVGSRCQLLSLPLSRETTFGV 752

Query: 511 QLLRDIIDEIIDSSTTY-----TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
             L ++I  + D+ T+          ++  + A  AC  SI  GR +   +M +++R M 
Sbjct: 753 ADLEELIFLLGDNPTSSATTAIPRPSKVRKMFAMRACRSSIMIGRALSRPQMEKVVRHMG 812

Query: 566 KNPNSSQCNHGRPTFIKL 583
           +      C HGRPT   L
Sbjct: 813 EMEKPWNCPHGRPTMRHL 830


>gi|268557254|ref|XP_002636616.1| C. briggsae CBR-PMS-2 protein [Caenorhabditis briggsae]
          Length = 797

 Score =  216 bits (550), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 185/432 (42%), Gaps = 42/432 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI K+S+ +  ++   +++   S A+++LI+NS+DA S+ ++  +   G    ++ DNG 
Sbjct: 5   KIEKISKDVAERLTTAQVVVSLSSALRQLIDNSIDAGSTIIDIRVKNNGYDSIEVQDNGS 64

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+ ++      + H TSK++   DF  + T GFRGEAL ++  VS +++ +R   +  G 
Sbjct: 65  GIETQNFDALCKPHSTSKLTQFSDFDKLVTLGFRGEALNALCTVSSVSIFTRAADSEIGT 124

Query: 120 Q-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAI 177
           + I      I+  +P A   GT + V +LF T+P R     +S++ E   +   ++  A+
Sbjct: 125 RLIYDHSGNITERQPAARELGTTIIVNNLFETLPVRRKELERSQKREFVKLLATVQSFAL 184

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINN--------------- 220
             P +    +          +          + ++ + G   I N               
Sbjct: 185 LCPHIKILCTNNIAGKKTNIICTPGGTSTIQDVVTNLFGMRRIGNSKNGSALVPILQDQP 244

Query: 221 ----------AVELNEKSNEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQDKFILSTI 268
                      +E  +  +   ++G+        G   +++ +V+IN R V+   + S  
Sbjct: 245 DGEIMAMHSLQMEETQFFDLFKIRGFVSSCEHGCGRGTSDRQFVYINNRPVEYMRVCSVT 304

Query: 269 RTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              Y +     +YP++VL +++ P ++DVNV P K  +       +   I  S+ K   K
Sbjct: 305 NDVYKQF-NKNQYPIIVLFIDVPPEKIDVNVTPDKKTVMLEKERHLLAVIRASMMKTYLK 363

Query: 329 ----KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ----EKLFLQENRLSTND 380
                    SSV  +++++   Q     +     + S  +         F +++ L+T+D
Sbjct: 364 IVGSHSTIKSSVEDRRIMALAQQSAINTSICSSKSPSPDDMNDTLLNSTFPEDSLLNTSD 423

Query: 381 LLPSDDPTYSED 392
           LL S   T S  
Sbjct: 424 LLKSRSVTRSPP 435



 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 11/240 (4%)

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           +D   +   P+    + N+ EK  L E          +D       +   +      +  
Sbjct: 556 RDVYSRHINPEPEDPVENSDEKDALDEITTGFKKEETADAERQLSRSLTKD-----DFTK 610

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +II +    L IVDQHA+ E+  FE+++   NS K+T Q L TP  +   
Sbjct: 611 MQIIGQFNHGFIICRLRGHLFIVDQHASDEKYNFERLQ---NSAKLTKQPLFTPIALGFG 667

Query: 467 EGECALIMEHDEDLHRLGIKAE-RFGPNAIA--IREIPAILSKKNIPQLLRDIIDEIIDS 523
             +  +I E+       G   + R     +   +   P +LS++     L +I+  + + 
Sbjct: 668 SVQELIIRENLPIFQANGFDFDFREKDGCLKTFLTARPELLSQQLTNSDLEEILAVVSEY 727

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                   RI NI A+ AC  S+  G+ +   EM R++R + K      C HGRPT   L
Sbjct: 728 PNQMYRPVRIRNIFASKACRKSVMIGKPLNHREMTRIIRHLSKLDQPWNCPHGRPTIRHL 787


>gi|33667830|gb|AAQ24515.1| Pms1 [Giardia intestinalis]
          Length = 727

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 124/699 (17%), Positives = 243/699 (34%), Gaps = 123/699 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS      I A +    P   +  L+ENSLDA +S +  V+ G G     + DNG 
Sbjct: 13  RIRSLSAGDSRLILATQQFPDPYKVVSALLENSLDAGASEIAIVLEGMGLKSITVNDNGC 72

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+    +          +++   S   +   +GE++  I A+S + + S    +    + 
Sbjct: 73  GLDLSTLQALGS----CRVTTATSQPGSLNRKGESIFLISALSTVLVTSSLGDDP--YER 126

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE---QVETNLITDVIRRMAIA 178
            +S +  S+        GT V V+DL+ +IP R  +  +    +     ITD+I+  A+A
Sbjct: 127 VVSEDTSSAKHATRAGRGTTVVVQDLYRSIPVRQRYFSTPSLRKKLLLSITDLIQSYALA 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-------EI 231
              + F      +    ++  S   +  +R  ++ G D  +     + ++         +
Sbjct: 187 NYTLGFRLIVDGAVHIDVSSGS-KNSIHDRYVELFGRDVRSLVGFFSFETRLGYTVKASL 245

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT-------------AYAETIPL 278
                   P    G+A + ++  NGR +    ++  ++              A    +PL
Sbjct: 246 ACPDAGITPQSKLGHARKIFLSTNGRPILCPSLIEALQQVYARISATNVPIGALNLVLPL 305

Query: 279 GRY------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN------------FIIQ 320
           G Y      P   L ++     +D+      +++   N + I N             +  
Sbjct: 306 GTYALARSTPYDTLQMQGLSVFIDLLSEEYLAWLLRYNKSTITNGHLGRDVTSKSLIVRA 365

Query: 321 SIQKAINKKGISTS-----------------SVLSKKMISSFHQDNAPKTHLPKYATSLT 363
           + +K++N     +S                 S +S    +SF     P+     ++ + T
Sbjct: 366 AKEKSVNSPCPKSSFGVRSQQRDTVPDNIVISRVSHTKAASFFHTRKPELRQAYHSETNT 425

Query: 364 NTQEKL------------FLQENRLSTNDLLPSDDPTYSEDNDPVEESE----------- 400
           NT+                  ++ LS      + D    E      ES+           
Sbjct: 426 NTEPPPGGTPSVLGIVGFSKLQSSLSNPGPSDASDSIKVESQSCDPESKVRIGPVRRRGS 485

Query: 401 -----ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                   +       Q +Q+++I+Q  +   ++DQHAAHE   F     + +   ++ Q
Sbjct: 486 ASGFRQQDFNNLKYICQYNQSFLITQLNNTFYLIDQHAAHEAKHFSDYWHNPHCY-LSRQ 544

Query: 456 TLLTPEIIDLLEGECALIMEHDE--DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
             +TP  + L   E   + E         +G +      N + I   P++  +    +  
Sbjct: 545 KTITPLKLRLRPDEKLCLEEFLSSAIFDIIGFELC-LSENYVLIFSFPSLFGQTLTEEDF 603

Query: 514 RDIIDEIIDSSTTYT--------------------------LQDRIENILATMACYGSIR 547
           R+ +  +   +  +                              RI  I A+ +C  S+R
Sbjct: 604 REYLLSLYGHTREHVESIICAKSTGSKPREKSLLCLLHNNIAPPRIRKIFASKSCKASVR 663

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            G         R++ ++ +      C HGRP    L L+
Sbjct: 664 LGDPRLDSTAKRIIADLARCEKPFNCPHGRPVLRFLDLA 702


>gi|156087210|ref|XP_001611012.1| DNA mismatch repair protein [Babesia bovis T2Bo]
 gi|154798265|gb|EDO07444.1| DNA mismatch repair protein, putative [Babesia bovis]
          Length = 800

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 156/382 (40%), Gaps = 13/382 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L   +I +IAAGE++ RP+ AIKELIENS+DA ++ ++  IA     + +++DNG G
Sbjct: 8   IKPLDPSVIAKIAAGEVVLRPAAAIKELIENSIDAGATEIKINIADNPLEYVEVSDNGHG 67

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           ++ E++ +  +R+ TSK  D+   + +FGFRGEAL ++   S++T+ SR  +      + 
Sbjct: 68  ISPEDMRLVCKRYTTSKTHDNIVGVKSFGFRGEALAALSHASNVTISSRTCKQTMRLVMK 127

Query: 123 ISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAY 179
               +  +      A   GT +   +LFF +  R      S  VE NL  ++++  A+ +
Sbjct: 128 YHNGEPLVDIADEKAGPVGTTITYENLFFNMGTREKALSSSPSVEFNLCLELVQNYAMHF 187

Query: 180 PKVSFTFSTIKSNRYKMNFQ-----STNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           P   F F  + S+   +         +N +  + I      ++     + + K   + + 
Sbjct: 188 PDFKFVFHKVGSSTNDLMTDGSIRAPSNNDASDHIDSGSSPEYNVPNTDYDYKHFNM-VD 246

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPV-VVLLLEIDPR 293
            Y                 +    +  + +   I   Y   +    Y   V     +   
Sbjct: 247 LYPPESNGTPSLLEYKDNVVKYSKMHLRKVKEVISLIYGTAVSNALYEFQVHSTSHVYYN 306

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
                 HP ++         + N +++     + K        L  K    F    +   
Sbjct: 307 CKGFFTHPNETNRCHSFILFVNNRLVE--HPGLKKNIDKIYKELMHKKQRRFVY-LSIYM 363

Query: 354 HLPKYATSLTNTQEKLFLQENR 375
              +   ++  ++EK+F +   
Sbjct: 364 PYERIDANVHPSKEKVFFKHQE 385



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 206 PERISQVIGEDFINNAVELNEK---SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDK 262
            E IS + G    N   E             +G+   P       +   +F+N R V+  
Sbjct: 277 KEVISLIYGTAVSNALYEFQVHSTSHVYYNCKGFFTHPNETNRCHSFI-LFVNNRLVEHP 335

Query: 263 FILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI 322
            +   I   Y E +   +   V L + +   ++D NVHP+K  + F++   I   I   +
Sbjct: 336 GLKKNIDKIYKELMHKKQRRFVYLSIYMPYERIDANVHPSKEKVFFKHQEEIVEEIGDKL 395

Query: 323 QKAIN 327
           ++ + 
Sbjct: 396 RERLR 400


>gi|58737035|dbj|BAD89426.1| postmeiotic segregation increased 2 nirs variant 2 [Homo sapiens]
          Length = 461

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I 
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCII 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVEL 224
              +  + +       +     T G  +  E I  V G+  + + +  
Sbjct: 195 SAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPF 242



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L 
Sbjct: 275 MEIIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLT 331

Query: 467 EGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
               A+++E+ E   + G              A  I  +P   +    PQ + ++I  + 
Sbjct: 332 AVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLS 390

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           DS        R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT  
Sbjct: 391 DSPGVMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMR 450

Query: 582 KL 583
            +
Sbjct: 451 HI 452


>gi|284055020|ref|ZP_06385230.1| DNA mismatch repair protein [Arthrospira platensis str. Paraca]
          Length = 431

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 188/475 (39%), Gaps = 65/475 (13%)

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           +  VA+ PGT+V+V +LF    +R     +   +      +++++A+ +P+V++      
Sbjct: 1   METVAIAPGTVVKVSNLFANWSSRRTAGPTATQQLRAAQLMLQQIALCHPQVTWQIHQND 60

Query: 191 SNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF------- 242
               +     +T    PE I  V   D     ++++          +             
Sbjct: 61  RPWLRFGPAVTTQQMLPEFIRGVRVGDLQYLKMDVDPPQQVEECHKFLSKSWLEVVIGLP 120

Query: 243 ---NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
              +R   +   + +NGR V+   +  TI +A++ T    RYPV  + L IDP  +D N 
Sbjct: 121 DRASRRRKDWVKIGVNGRMVRSPELEPTILSAFSRTCGRDRYPVCFVHLHIDPALIDWNR 180

Query: 300 HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           HP+K+ I        +  I  +I + +                             P+  
Sbjct: 181 HPSKAEIYLHYLNHWQEQIHLAIDQTLKLN--------------------------PESL 214

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
           ++  N  EKL       ++         T     +  E  +        A  QIH  YI+
Sbjct: 215 SAGVNPIEKLLRVSEDTASY-------RTRPTPLESAENPQRVDVPKLKAIGQIHNTYIV 267

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           ++  +GL +V+QH AHER+I+E++ + +    +++  ++             L     E 
Sbjct: 268 AEHPEGLWLVEQHIAHERVIYEQLCRRWQVIPLSTPIIVAN-----------LSEAQLEQ 316

Query: 480 LHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
           L RL ++ + FG    AIR  P IL       L +D  + +I+ S    LQ         
Sbjct: 317 LTRLNLEVDPFGDGLWAIRSAPEIL------ALRQDCQEALIELSLGGDLQ----AAQVA 366

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            AC  +IR+G  +   EM  LL +     +   C HGRP F+ L+ S + + F R
Sbjct: 367 TACRSAIRNGTSLSLTEMQTLLDQWVSTRSPRTCPHGRPIFLSLEESSLARFFRR 421


>gi|289672582|ref|ZP_06493472.1| DNA mismatch repair protein [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 127/205 (61%)

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S     + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 14  SAAPASLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 73

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 74  EGLSGQPLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEA 133

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 134 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 193

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 194 SGQCNHGRPTWTQMGLNDLDKLFLR 218


>gi|330899891|gb|EGH31310.1| DNA mismatch repair protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 222

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 127/205 (61%)

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           S     + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +
Sbjct: 16  SAAPASLPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMAN 75

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             ++ Q LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +   
Sbjct: 76  EGLSGQPLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEA 135

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            +L+ D++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    
Sbjct: 136 NRLVSDVLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTER 195

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
           S QCNHGRPT+ ++ L+D++KLF R
Sbjct: 196 SGQCNHGRPTWTQMGLNDLDKLFLR 220


>gi|260223094|emb|CBA33314.1| DNA mismatch repair protein mutL [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 495

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 149/297 (50%), Gaps = 24/297 (8%)

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTL 108
                + D+G G+  +E+P+A +RH TSKI +  D  ++ T GFRGEAL +I +++   +
Sbjct: 1   MRLISVEDDGQGILRDELPIAFKRHATSKIGNLQDLESVATMGFRGEALAAINSIADCAI 60

Query: 109 MSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +SR    N    +     ++   RPVA   GT VEV++LF++ PAR  FLK++  E    
Sbjct: 61  LSRASGLNDAYLLDGRTGEL---RPVARGQGTTVEVKELFYSTPARRKFLKTDATELAHC 117

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ-----------STNGNFPERISQVIGEDF 217
            + +RR A+A P V F          +               +      +R+S V+G +F
Sbjct: 118 IESVRRHALARPDVGFAIWHEGKLVEQWRRCLDVPLADAAVDAALAALDQRLSDVLGPEF 177

Query: 218 INNAVELNEK--------SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
           +  +V ++             + + G  G+P   R  A+Q + ++NGR V+DK +    R
Sbjct: 178 LAQSVRVDWHSKQANEFGQPALRVWGRAGVPDAARSRADQQFCYVNGRFVRDKVLTHAAR 237

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           +AY + +   R PV  L + +DP +VDVNVHP K  +RFR+   +   +  +++  +
Sbjct: 238 SAYEDVLHGNRQPVYALYVAMDPTRVDVNVHPTKIEVRFRDSREVHQAVRHAVEDTL 294


>gi|325295324|ref|YP_004281838.1| ATP-binding region ATPase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065772|gb|ADY73779.1| ATP-binding region ATPase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 482

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/483 (22%), Positives = 193/483 (39%), Gaps = 35/483 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L  +II++IA+G+I   P   +KELIEN++DA+++ +   I       F++TDNG G
Sbjct: 2   IKRLPPEIISKIASGQIASSPMNVLKELIENAIDAKATEILIRIKD--HFNFKVTDNGIG 59

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +E+P AV+R  TSKIS   D S I+T+GFRGEAL +I  VSHLT+ SR  + + G +
Sbjct: 60  IPYKELPTAVERFTTSKISTIRDLSQINTYGFRGEALYAISQVSHLTIKSRFQEESIGGK 119

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + + G KI S  P++ + GT V V  L+F +P R       +        +++  A+  P
Sbjct: 120 LEVKGGKILSHSPISFSRGTSVLVSSLYFNVPVRKKCFDLREKRNLK--KIVKTFALCRP 177

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
           +++F                   +  ERI Q+ G++           +     +   G  
Sbjct: 178 EITFKLDNE---------VFFASSLEERIRQIFGKEITFEKELSKRFTIFYLTEKEEGRR 228

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
             +        +F+N R V    +   +       + +  Y   +L + + P +VDVNV 
Sbjct: 229 KISF-------IFVNKRPVSLPEVEKVLSE-----LNIKNY---ILFINVTPEEVDVNVT 273

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           P K  +  R+     + + +       K  + T  VL +K    +               
Sbjct: 274 PTKDKVILRD----FSILEEMKNLLAKKVFLPTFPVLREKKEIHYQTPIEVLGSDGTIIV 329

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           +  +     F Q       +        +S+                +      + + I 
Sbjct: 330 AHDSEYFYFFDQHLIHERVNYEELISLLFSKKVPLKRIFPPMEVDFSVKLTDKLEKFGIE 389

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
               G  I   H+  E L  E +++  N     S   +  +       +     +  E  
Sbjct: 390 YEKVGKTIF-IHSIPEILRVEDIKKIINGETPESIAEIACKKAIKSGYKPLNFNDIKELF 448

Query: 481 HRL 483
            + 
Sbjct: 449 EKY 451



 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 25/235 (10%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           ++T T++K+ L++  +            +      + E +  HYQ  I         I++
Sbjct: 271 NVTPTKDKVILRDFSILEEMKNLLAKKVFLPTFPVLREKKEIHYQTPIEVLGSDGTIIVA 330

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
             ++     DQH  HER+ +E++     S K+  + +  P  +D             + L
Sbjct: 331 HDSEYFYFFDQHLIHERVNYEELISLLFSKKVPLKRIFPPMEVDFSVKLT-------DKL 383

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
            + GI+ E+ G   I I  IP IL  ++I +++        ++  +          +A +
Sbjct: 384 EKFGIEYEKVG-KTIFIHSIPEILRVEDIKKIIN------GETPES----------IAEI 426

Query: 541 ACYGSIRSG-RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           AC  +I+SG + +   ++  L  +     N   C HGRP + ++K S I +  GR
Sbjct: 427 ACKKAIKSGYKPLNFNDIKELFEKYLLCKNRETCPHGRPIYYRIKKSKIMRKVGR 481


>gi|330939866|gb|EGH43096.1| DNA mismatch repair protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 206

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/199 (39%), Positives = 126/199 (63%)

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
           + ES      LG A AQ+   YI+++   GLV+VD HAAHER+++E+++    +  ++ Q
Sbjct: 6   LPESPGDIPPLGYALAQLKGIYILAENAHGLVLVDMHAAHERIMYERLKIAMANEGLSGQ 65

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL PE I + + E     EH     RLG + +R GP  +AIR+IPA+L +    +L+ D
Sbjct: 66  PLLVPESIAVSQREADCAEEHLATFQRLGFELQRLGPETLAIRQIPALLKQAEANRLVSD 125

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ ++++  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S QCNH
Sbjct: 126 VLADLMEYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERSGQCNH 185

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ ++ L+D++KLF R
Sbjct: 186 GRPTWTQMGLNDLDKLFLR 204


>gi|195384627|ref|XP_002051016.1| GJ19872 [Drosophila virilis]
 gi|194145813|gb|EDW62209.1| GJ19872 [Drosophila virilis]
          Length = 886

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 148/358 (41%), Gaps = 47/358 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   ++AIKEL+ENS+DA ++ +E  +   G    ++ DNG 
Sbjct: 20  QIKAIAKDTVHKICSGQVVLSLAVAIKELVENSIDAGATLIEVKLKDQGLQGVEVCDNGS 79

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    +   
Sbjct: 80  GVEEANLAGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMAIQTRHKSADVAL 139

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           +I +  E KI    P A   GT V + +LF T+P R     ++ + E N +  +++   +
Sbjct: 140 KIELDHEGKIKKRSPCARGVGTTVTLSNLFATLPVRRRDFTRNIKKEFNKMCQILQAYCL 199

Query: 178 AYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN------ 229
               V    S    K  +  +       +    IS + G   + + V L           
Sbjct: 200 VTRGVRIICSNQTPKGVKSVLLQTHGAQDVLANISAIFGVRQVADLVPLKSPFEAGEISE 259

Query: 230 --------------------------------EITLQGYTGIPTF--NRGNANQFYVFIN 255
                                              L+GY         R   ++ + F+N
Sbjct: 260 ERLRAELQSASDTAETTCIAFGAEDVERLNQAGFQLEGYISSCRHGAGRSTRDRQFFFVN 319

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTI 313
            R  + K I   +   Y     + + P + L +     +VDVN+ P K  +   N  I
Sbjct: 320 ARPCEPKNIAKVMNDVYHRY-NVQQQPFIYLNIVTSRAEVDVNLTPDKRQLLLNNERI 376



 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 9/206 (4%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           +     + + +  +E     ++      Q +  +II +  D L IVDQHAA E+  FE +
Sbjct: 661 NPSQNQNAEAELQKEITKADFERMQIIGQFNLGFIIVKLDDDLFIVDQHAADEKYNFETL 720

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIRE 499
           ++   +T++  Q L  P+ ++L      ++ +H     + G K E          + +  
Sbjct: 721 QR---NTQLEHQRLTVPQTLELTAVNEMILQDHLPVFEKNGFKFEINADAPATKKVRLLG 777

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKM-QSIEM 557
            P   + +   + + ++I  + D+         RI  + A+ AC  S+  G+ + ++  M
Sbjct: 778 KPFSKNWEFGKEDIDELIFMLQDAPEGTICRPSRIRAMFASRACRKSVMIGKALHRTTTM 837

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
            RL+ +M +      C HGRPT   L
Sbjct: 838 RRLITQMGEIEQPWNCPHGRPTMRHL 863


>gi|3193224|gb|AAC19245.1| mutL homolog PMS2 [Drosophila melanogaster]
          Length = 893

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 156/423 (36%), Gaps = 52/423 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ + +  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R    +   
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDGVK 145

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
                  +I    P A   GT V + +LF T+P R     ++ + E   +  +++   + 
Sbjct: 146 VELDHEGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCLV 205

Query: 179 YPKVSFTFSTI-----------------------------KSNRYKMNFQSTNGNFPE-- 207
              V    S                                     +      G   E  
Sbjct: 206 TKGVRILCSNHTPKGPKLLCYKRMVTRRSWPIYQPYRSTPGRGSVPLKSPFGQGQLTEAE 265

Query: 208 ---------RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFING 256
                     ++           VE   +  +  L+G+         R + ++ + F+N 
Sbjct: 266 LRADLESGADLADTTSPQISTEDVERLNQ-ADFQLEGFISSCRHGAGRSSRDRQFFFVNS 324

Query: 257 RTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316
           R    K I   +   Y     + + P + L +      VDVN+ P K  +   N      
Sbjct: 325 RPCDPKNIAKVMNEVYHRY-NVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNER---- 379

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
            I+    K         +    +   ++      PKT+  K      +++E    + +  
Sbjct: 380 -ILLLALKKSLLDTFGQTPATFQMQNTTIVSMLEPKTNSGKTKFPKESSKEDQHEEVSEE 438

Query: 377 STN 379
              
Sbjct: 439 DVP 441



 Score =  143 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 101/276 (36%), Gaps = 13/276 (4%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I       I            ++ + S        T L + A+SL   +++   +  R  
Sbjct: 602 IASDEDDHIELPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQRDRRTRTK 661

Query: 378 TNDLLPSDDPTYSEDNDPVEE----SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
              L    +   +++     E     +   +       Q +  +II +  D L IVDQHA
Sbjct: 662 LQRLRFKTEINPNQNTSAEAELRREIDKEDFAPMEIIGQFNLGFIIVKLEDDLFIVDQHA 721

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP- 492
             E+  FE +++      +  Q L  P+ ++L      +++ H +   + G K E     
Sbjct: 722 TDEKYNFETLQRTTQ---LEYQRLAVPQNLELTAVNEMVLLNHIDVFEKNGFKFEVDHEA 778

Query: 493 ---NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRS 548
                + +   P     +   + + ++I  + D+         R+  + A+ AC  S+  
Sbjct: 779 PATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRACRKSVMI 838

Query: 549 GRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
           G  +     M RL+ +M +      C HGRPT   L
Sbjct: 839 GTALSRNTTMRRLITQMGEIEQPWNCPHGRPTMRHL 874


>gi|33667832|gb|AAQ24516.1| Mlh1 [Giardia intestinalis]
          Length = 786

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 192/553 (34%), Gaps = 66/553 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  + + ++AAGE+I+RP    KEL+EN+ DA++  +   ++        + D G 
Sbjct: 3   PIRILDPETVAKMAAGEVIQRPFNVAKELVENATDADAPTIRLFVSSNCYDLLMVCDTGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +  +   R  TSKI    D  +I +FGFRGEAL SI  VS + ++S+        
Sbjct: 63  GIERTDYSLLCHRFATSKIETFSDIYSIQSFGFRGEALSSISYVSRMIVVSKTKNQPAYV 122

Query: 120 QIAIS------------GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
            + I                   +  +  +  TI+ V DLF+  P R N ++S +   +L
Sbjct: 123 AVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDLFYAEPIRRNQIRSSKTSLDL 182

Query: 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI------------------ 209
             +++  ++ A P   ++ S I + +       +  N  + I                  
Sbjct: 183 -QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQHISGMLSLISYTIEFGTATL 241

Query: 210 --------------------SQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
                               SQ  G       V+   K               +  + ++
Sbjct: 242 HFSSTTTRYQRFLQVLTALLSQTKGCGTEPLQVQSLVKHYPCDTCRELSFYFVDPVDHSR 301

Query: 250 FY-------VFINGRTVQDKFILSTIRTAYAETIP-LGRYPVVVLLLEIDPRQVDVNVHP 301
                    +FINGR VQ   + + +++     +         +L + +DP   D NVHP
Sbjct: 302 QDKRLINLLIFINGRRVQYPRLKNAVQSVVDIYLSAFSTIQAGILWIAVDPGGCDPNVHP 361

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           +K  +      +I   +I  + + + +  + T+  L  +  +      AP  +  + +  
Sbjct: 362 SKERVLLLEEEVIYTAVIDMLTQHMKEHHVKTAEQLLSQPKTKLRPRLAPTDNSVQKSNR 421

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           L NT +  F   +             +     +                A       +S 
Sbjct: 422 LINTLDSSFKGTSSPLYKQRHDPSMVSILRFENVQRTPREREPPNTQTSAPCSPPLQLSH 481

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D           E    +  R+   +           + + +++    +  ++ E L+
Sbjct: 482 HID-----SHDQEGEGKQVDCDRESKENQTTDISDTAITDDVVIIQQVQDIQAQNAEPLN 536

Query: 482 RLGIKAERFGPNA 494
            +    + FG  +
Sbjct: 537 YMAFFDKEFGEYS 549


>gi|159108256|ref|XP_001704400.1| Mlh1-like protein [Giardia lamblia ATCC 50803]
 gi|157432462|gb|EDO76726.1| Mlh1-like protein [Giardia lamblia ATCC 50803]
          Length = 786

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 192/553 (34%), Gaps = 66/553 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  + + ++AAGE+I+RP    KEL+EN+ DA++  +   ++        + D G 
Sbjct: 3   PIRILDPETVAKMAAGEVIQRPFNVAKELVENATDADAPTIRLFVSSNCYDLLMVCDTGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +  +   R  TSKI    D  +I +FGFRGEAL SI  VS + ++S+        
Sbjct: 63  GIERTDYSLLCHRFATSKIETFSDIYSIQSFGFRGEALSSISYVSRMIVVSKTKNQPAYV 122

Query: 120 QIAIS------------GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
            + I                   +  +  +  TI+ V DLF+  P R N ++S +   +L
Sbjct: 123 AVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDLFYAEPIRRNQIRSSKTSLDL 182

Query: 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI------------------ 209
             +++  ++ A P   ++ S I + +       +  N  + I                  
Sbjct: 183 -QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQHISGMLSLISYTIEFGTATL 241

Query: 210 --------------------SQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
                               SQ  G       V+   K               +  + ++
Sbjct: 242 HFSSTTTRYQRFLQVLTALLSQTKGCGTEPLQVQSLVKHYPCDTCRELSFYFVDPVDHSR 301

Query: 250 FY-------VFINGRTVQDKFILSTIRTAYAETIP-LGRYPVVVLLLEIDPRQVDVNVHP 301
                    +FINGR VQ   + + +++     +         +L + +DP   D NVHP
Sbjct: 302 QDKRLINLLIFINGRRVQYPRLKNAVQSVVDIYLSAFSTIQAGILWIAVDPGGCDPNVHP 361

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           +K  +      +I   +I  + + + +  + T+  L  +  +      AP  +  + +  
Sbjct: 362 SKERVLLLEEEVIYTAVIDMLTQHMKEHHVKTAEQLLSQPKTKLRPRLAPTDNSVQKSNR 421

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           L NT +  F   +             +     +                A       +S 
Sbjct: 422 LINTLDSSFKGTSSPLYKQRHDPSMVSILRFENVQRTPREREPPNTQTSAPCSPPLQLSH 481

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             D           E    +  R+   +           + + +++    +  ++ E L+
Sbjct: 482 HID-----SHDQEGEGKQVDCDRESKENQTTDISDTAITDDVVIIQQVQDIQAQNAEPLN 536

Query: 482 RLGIKAERFGPNA 494
            +    + FG  +
Sbjct: 537 YMAFFDKEFGEYS 549


>gi|194882839|ref|XP_001975517.1| GG22356 [Drosophila erecta]
 gi|190658704|gb|EDV55917.1| GG22356 [Drosophila erecta]
          Length = 888

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 166/424 (39%), Gaps = 52/424 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ +++  +++I +G+++   ++A+KEL+ENS+DA ++ VE  +   G    +++DNG 
Sbjct: 26  QIKAIAKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQGVEVSDNGS 85

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+    +     ++ TSKI +  D   + TFGFRGEAL S+ A+S + + +R   ++ G 
Sbjct: 86  GVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSSDVGV 145

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
           ++ +  E +I    P A   GT V + +LF T+P R     ++ + E   +  +++   +
Sbjct: 146 KVELDHEGRIKKRSPCARGVGTTVVLANLFTTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPER--ISQVIGEDFINNAVE------------ 223
               V    S       K     T+G+      IS + G     + V             
Sbjct: 206 VTKGVRILCSNHTPKGAKTVVLQTHGDHEVMANISAIFGTRQAADLVPLKSPFGDRQLSE 265

Query: 224 --------------------------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFIN 255
                                           +I L+G+         R + ++ + F+N
Sbjct: 266 AELRSDLESCADVADTNCPQFSAEDVERLNQADIKLEGFISSCRHGAGRSSRDRQFFFVN 325

Query: 256 GRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            R    K I   +   Y     + + P + L +      VDVN+ P K  +   N     
Sbjct: 326 SRPCDPKNIAKVMNEVYHRY-NVQQQPFIYLNIVTARSDVDVNLTPDKRQLLINNER--- 381

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
             I+    K         +    +   ++      PKT+  K       ++E    + + 
Sbjct: 382 --ILLLALKKSLLDTFGQTPATFQMQNTTIVSMLEPKTNPDKTKFQEELSKENKNEEASE 439

Query: 376 LSTN 379
               
Sbjct: 440 EDVP 443



 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 102/276 (36%), Gaps = 13/276 (4%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I       I            ++ + S        + L + A+SL   ++    +  R  
Sbjct: 597 IASDEDDHIALPAKIEFDEEVEEGLPSNFSSGEIISSLEEIASSLKAHEQHQRDRRARAK 656

Query: 378 TNDLLPSDDPTYSEDN----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
              L    +   +++N    +   E +   +       Q +  +II +  D L IVDQHA
Sbjct: 657 LQRLRFKTEINPNQNNSAEAELQREIDKEDFARMEIIGQFNLGFIIVKLEDDLFIVDQHA 716

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP- 492
             E+  FE +++      +  Q L  P+ ++L      +++ H +   + G K E     
Sbjct: 717 TDEKYNFETLQRTTQ---LEYQRLTVPQSLELTAVNEMVLLNHIDVFEKNGFKFEVDHEA 773

Query: 493 ---NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRS 548
                + +   P     +   + + ++I  + D+         R+  + A+ AC  S+  
Sbjct: 774 PATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRACRKSVMI 833

Query: 549 GRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
           G  +     M RL+ +M +      C HGRPT   L
Sbjct: 834 GTALNRNTTMRRLITQMGEIEQPWNCPHGRPTMRHL 869


>gi|121719966|ref|XP_001276681.1| DNA mismatch repair protein, putative [Aspergillus clavatus NRRL 1]
 gi|119404893|gb|EAW15255.1| DNA mismatch repair protein, putative [Aspergillus clavatus NRRL 1]
          Length = 883

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 164/437 (37%), Gaps = 42/437 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  I +  ++  P   +KEL++NSLDA ++ V   ++       Q+ DNG
Sbjct: 1   MPIAALPQSTVRAIGSTSVVSDPCSIVKELLDNSLDAGATAVFIEVSQNTVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G+TS + P+  +R  TSKIS  +D S +   + GFRGEAL S   VS  +T+ +R    
Sbjct: 61  HGITSGDHPLVCKRAFTSKISTVEDLSGLGGKSLGFRGEALASAAEVSGGVTITTRTAAE 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G+         + S +  +   GT V V DLF  IP R   + K        I  +I+
Sbjct: 121 PVGSVLKYGRNGDLLSTQRASHPVGTTVRVTDLFKHIPVRRQTVLKGTTKTLARIKKIIQ 180

Query: 174 RMAIAYPKVSFTFSTIK---SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS-- 228
              +A P +  +   ++        +   S +    +   +V G +  +  +        
Sbjct: 181 SYVVAQPTIRLSLKVLRASSEKANWVYAPSKDATLKDAGLKVAGTEVASACISRQWPCIS 240

Query: 229 -----------NEITLQGYTGIP----TFNRGNANQFYVFINGRTVQD-KFILSTIRTAY 272
                        + L      P     +++ ++   +V ++GR +   + I   I   Y
Sbjct: 241 NSNYETGDSNGPTLKLIALLANPEAGLDYSKASSGGQFVSVDGRPLSPTRGIGQEITKLY 300

Query: 273 AETI----PLGRY------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR----NFI 318
              +        Y      P + L +  D    DVNV PAK  + F +   I     + +
Sbjct: 301 QSYLRAAASHDDYPRNISDPFLCLHIRCDEACYDVNVEPAKDDVLFEDQEHILSLVADLL 360

Query: 319 IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                +A  K G   +    K  + + +          +   S   T    +   N +S 
Sbjct: 361 RDVYGEAPGKAGKRKTPAKGKGRMDNNNDAFHLLLAHKEPVVSSPETVRNDYKPPNFISA 420

Query: 379 NDLLPSDDPTYSEDNDP 395
           + L        S  N+ 
Sbjct: 421 SSLFHLRRSQKSLPNEQ 437


>gi|118366123|ref|XP_001016280.1| DNA mismatch repair protein, C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|89298047|gb|EAR96035.1| DNA mismatch repair protein, C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 731

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 95/407 (23%), Positives = 167/407 (41%), Gaps = 16/407 (3%)

Query: 27  IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DF 84
           +KELIEN LDA SS +   +  GG     + DNG G+  ++ P+  +R  TSKI++  D 
Sbjct: 20  VKELIENCLDAGSSEISVGLVQGGLKQLIVEDNGSGIHKDDFPLLCERFATSKINEFNDL 79

Query: 85  SNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI--SSVRPVAMNPGTIV 142
            ++ +FGFRGEAL SI  VS+L + SR P ++ G + +     +       V    GT V
Sbjct: 80  QSLVSFGFRGEALASISFVSNLKITSRKPNSDLGYKASFKNGVMLGEEPEAVNCTEGTTV 139

Query: 143 EVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTN 202
           +V+DLFF   AR   L +   E   +  +I + A+ + K+ F F +    ++  +    +
Sbjct: 140 DVQDLFFNYDARRKSL-NVNEEKKRVLKLIGQFAMHHAKLRFKFKSDNQIQFSSHSVLGS 198

Query: 203 GNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDK 262
               + I+++  + F +   E      ++  +G        +       +FIN R V+ +
Sbjct: 199 TELQQ-ITKIADKSFTS--CESESTEYQVKFKGTFSNIGATKKYKE-ITLFINNRLVECE 254

Query: 263 FILSTIRTAYAETIP-----LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
            I   +  +Y           G Y    L LE++P+ +D NVHP K  ++F     I   
Sbjct: 255 SIKKAVERSYQSCYQSIHEEEGGY-FCYLSLEMNPKNLDPNVHPTKKEVKFLFEYEIAKE 313

Query: 318 IIQSIQKAINKKGISTS-SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
           I   I + +   G+    S    +  SSF   N  ++   +      +   K      + 
Sbjct: 314 IESWIFENLKNCGVIKQLSANISQRTSSFETSNVKRSSSSQLYFGSQSNLSKQNSDYYQP 373

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTT 423
           +    +   D   +         +  +         I+      +  
Sbjct: 374 TKQIRVDPRDQKITRFFSVESSEDGNNNSNQKNYQSINYIEEQKEEH 420


>gi|159123611|gb|EDP48730.1| DNA mismatch repair protein, putative [Aspergillus fumigatus A1163]
          Length = 882

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 143/353 (40%), Gaps = 36/353 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  +  I +  +I  P   +KEL++NSLDA ++ +   I+       Q+ DNG
Sbjct: 1   MPIKALPQTTVRAIGSTSVISDPCSIVKELLDNSLDAHATAISVEISQNTVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G+ +E+ P   +R  TSKI+  +D   +   + GFRGEAL S   V   +T+ +R   +
Sbjct: 61  HGIPAEDHPFVCRRAFTSKIATVEDLRKLGGKSLGFRGEALASAAEVCGGVTVTTRVEAD 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G         ++ S +  +   GT V V DLF +IP R   + KS       I  +++
Sbjct: 121 PVGFCIKYGRNGELISTQRASHPVGTTVRVTDLFKSIPVRRQTVLKSTAKTVAKIKKIVQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNG---NFPERISQVIGEDFINNAVELNEKSNE 230
             AIA P +  +   +K+   K N+    G   +  +   +V G +  +  V        
Sbjct: 181 SYAIAQPTIRLSLKVLKAANEKANWVFAPGKNASLTDAALKVAGTEVASACVTKPWPCAN 240

Query: 231 -------------ITLQGYTGIP--TFNRGNANQFYVFINGRTVQ-DKFILSTIRTAYAE 274
                          L      P   F++ N    +  ++GR +   + I   I   Y  
Sbjct: 241 ESGEESRVVNGSSFQLMALLADPGSDFSKVNNAGQFFSVDGRPLSASRGIGQEISKLYKT 300

Query: 275 TI----------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
            +          P    P + L +       DVNV PAK  + F N   + + 
Sbjct: 301 YLRAAASRSGGFPYISDPFLCLQIRCPEASYDVNVEPAKDDVLFENQQDLLSL 353


>gi|70983714|ref|XP_747384.1| DNA mismatch repair protein [Aspergillus fumigatus Af293]
 gi|66845010|gb|EAL85346.1| DNA mismatch repair protein, putative [Aspergillus fumigatus Af293]
          Length = 882

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 143/353 (40%), Gaps = 36/353 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  +  I +  +I  P   +KEL++NSLDA ++ +   I+       Q+ DNG
Sbjct: 1   MPIKALPQTTVRAIGSTSVISDPCSIVKELLDNSLDAHATAISVEISQNTVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G+ +E+ P   +R  TSKI+  +D   +   + GFRGEAL S   V   +T+ +R   +
Sbjct: 61  HGIPAEDHPFVCRRAFTSKIATVEDLRKLGGKSLGFRGEALASAAEVCGGVTVTTRVEAD 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G         ++ S +  +   GT V V DLF +IP R   + KS       I  +++
Sbjct: 121 PVGFCIKYGRNGELISTQRASHPVGTTVRVTDLFKSIPVRRQTVLKSTAKTVAKIKKIVQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNG---NFPERISQVIGEDFINNAVELNEKSNE 230
             AIA P +  +   +K+   K N+    G   +  +   +V G +  +  V        
Sbjct: 181 SYAIAQPTIRLSLKVLKAANEKANWVFAPGKNASLTDAALKVAGTEVASACVTKPWPCAN 240

Query: 231 -------------ITLQGYTGIP--TFNRGNANQFYVFINGRTVQ-DKFILSTIRTAYAE 274
                          L      P   F++ N    +  ++GR +   + I   I   Y  
Sbjct: 241 ESGEESRVVNGSSFQLMALLADPGSDFSKVNNAGQFFSVDGRPLSASRGIGQEISKLYKT 300

Query: 275 TI----------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
            +          P    P + L +       DVNV PAK  + F N   + + 
Sbjct: 301 YLRAAASRSGGFPYISDPFLCLQIRCPEASYDVNVEPAKDDVLFENQQDLLSL 353


>gi|116195894|ref|XP_001223759.1| hypothetical protein CHGG_04545 [Chaetomium globosum CBS 148.51]
 gi|88180458|gb|EAQ87926.1| hypothetical protein CHGG_04545 [Chaetomium globosum CBS 148.51]
          Length = 1072

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 168/432 (38%), Gaps = 57/432 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV------------------- 42
            I+ +    ++QI +G++I       KEL+ENS DA ++ +                   
Sbjct: 6   TIKAIESSTVHQIQSGQVIVDLCSVAKELVENSFDARATAIGTWLSLPKKAHARRAALVN 65

Query: 43  ------ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRG 94
                 +      G    ++ DNG G+ S        +H TSK++  DD S + TFGFRG
Sbjct: 66  KATPLADVRFKNQGLDSIEVQDNGLGIASHNYESIALKHYTSKLTSYDDLSELQTFGFRG 125

Query: 95  EALPSIGAVSHLTLMSRPPQN-NTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIP 152
           EAL S+ A+S   +++   Q+    +++      K+ S   V+   GT V V DLF  +P
Sbjct: 126 EALSSLCALSRFAVVTCTAQDVPRASRLEFETSGKLKSTSVVSGQKGTTVIVEDLFHNLP 185

Query: 153 ARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERI 209
            R     ++ + E   + +++ + A     V FT S   +   +M   ST GN    E I
Sbjct: 186 VRRRELERNIKREWGKVINLLNQYACVQTGVKFTVSQQPTKGKRMVLFSTKGNPTTRENI 245

Query: 210 SQVIGEDFINNAV--------------------ELNEKSNEITLQGYTGIPTF--NRGNA 247
             V G   +N  +                    + +  + E+ + G+   P     R   
Sbjct: 246 INVFGVKTMNALILMDLKLELTPTAGPLNKGKAKASGSATEVRVLGHVSRPAHGEGRQTP 305

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
           ++   ++NGR              Y       + P +   +++D    DVNV P K  I 
Sbjct: 306 DRQMFYVNGRPCGLPQFAKVFNEVYRSY-NASQSPFIFADIQLDTHLYDVNVSPDKRTIL 364

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH--LPKYATSLTNT 365
             +   + + + +S+ +    + ++     ++ +  +  +  A ++        +S   T
Sbjct: 365 LHDQGQMLDNLRESLIELFETQDVTIPVSQAQALKQNPFKTAAGRSWTLTSAQTSSRAAT 424

Query: 366 QEKLFLQENRLS 377
            E     E+  S
Sbjct: 425 VESQRQAESSSS 436



 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 424  DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            D L I+DQHA+ E+  FE+++    +T + SQ L+ P+ +DL   E  +I+EH   L R 
Sbjct: 942  DELFIIDQHASDEKYNFERLQ---ATTTVQSQRLVQPKTLDLTALEEEIILEHLPALERN 998

Query: 484  GIKA 487
            G   
Sbjct: 999  GFVV 1002


>gi|209520576|ref|ZP_03269331.1| MutL dimerisation [Burkholderia sp. H160]
 gi|209498969|gb|EDZ99069.1| MutL dimerisation [Burkholderia sp. H160]
          Length = 324

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 118/224 (52%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
            +    +T+   P D   ++    P          LG A  Q+H  Y+++Q   GLVIVD
Sbjct: 99  FEARDSATDTTSPYDATPFASRPTPPAFDATDDQPLGFALGQVHGIYVLAQNRHGLVIVD 158

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
            HAAHER+++E+ +       I  Q LL P+ +     E   + E  + L  LG      
Sbjct: 159 MHAAHERILYEQFKHALADRTIAVQPLLIPQTMQADPVEIGTVEEERDTLDALGFDLAVL 218

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
            P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R
Sbjct: 219 SPTTLAIRAVPALLKDADLQALARAVLSDLHAFGGSRVLTERQHELLGTLACHHAVRANR 278

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 279 RLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLADLDRLFMR 322


>gi|197127288|gb|ACH43786.1| putative postmeiotic segregation increased 2-like 6 [Taeniopygia
           guttata]
          Length = 267

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR +    +++I +G+++     A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 14  IRPIDRGSVHRICSGQVVLSLGTAVKELVENSLDAGATNIDIKLKDHGAELIEVSDNGVG 73

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +HCTSKI D  D  ++ TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 74  VEEENFEGLTLKHCTSKIQDFSDLIHVETFGFRGEALSSLCALSDVTIFTCHKSAKVGTR 133

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      +I+   P+    GT V ++ LF+T+P R   F ++ + E   +  +++   I 
Sbjct: 134 LVFDHNGRITQKAPLPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEYAKMVQLLQAYCIV 193

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
              V    +    +  +  +   + + +  E I  V G+  + + +  
Sbjct: 194 SKGVRINCTNQVGQGKKTCVISTAGSPSLKENIGAVFGQKQLQSLIPF 241


>gi|320164350|gb|EFW41249.1| DNA mismatch repair protein MLH1 [Capsaspora owczarzaki ATCC 30864]
          Length = 762

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 14/295 (4%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGA 102
            +  GG    QI DNG G+  +++ +  +RH TSK+   DD  +I TFGFRGEAL S+  
Sbjct: 2   SVKAGGMKLMQIADNGSGIHLDDLDLVCERHTTSKLERFDDLKSIATFGFRGEALASVTR 61

Query: 103 VSHLTLMSRPPQNNTGAQIAISGEKISS---------VRPVAMNPGTIVEVRDLFFTIPA 153
           V+H++++S+        +   + EK+            RP A N GTI+ V DLF+ I  
Sbjct: 62  VAHVSIISKTADAKCAYKAHYADEKLVPPTASDTNARPRPCAGNKGTIITVEDLFYNIST 121

Query: 154 RLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
           R   LKS   E   I DV+ + AI    VSFT              +  G   + +  + 
Sbjct: 122 RRKALKSPAEEHAKIVDVVGKYAIHNSGVSFTLKKHGETTAADVRTAAGGTRIDAVRAIY 181

Query: 214 GEDFINNAVELNEKSNEIT--LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
           G       +EL+    ++   ++G      ++         FIN R V    I   I T 
Sbjct: 182 GAQVARELLELDGTEPKLDLVVKGLVSNADYSMPRGTFI-FFINHRLVDCPSIRKAIETV 240

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           YA  +P   +P V L L +  + VDVN+HP K  + F +  ++   + + ++  +
Sbjct: 241 YAAYLPKKTFPFVYLSLLMPGQNVDVNIHPTKKEVHFLHEDVVVETVQKMLEAKL 295


>gi|321253476|ref|XP_003192745.1| ATPase [Cryptococcus gattii WM276]
 gi|317459214|gb|ADV20958.1| ATPase, putative [Cryptococcus gattii WM276]
          Length = 1020

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 167/431 (38%), Gaps = 43/431 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +   +I++I +G+++     AIKEL+ENSLDA ++ ++  I   G    ++ DNG 
Sbjct: 4   SIKAIDTSLIHRIHSGQVVLDLQSAIKELLENSLDAGATAIDVRIKDNGLDSIEVVDNGS 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQ-NNT 117
           G+   +      RH TSK+   +D   + TFGFRGEAL ++ A+   +T+++   +    
Sbjct: 64  GIAEADWESIALRHHTSKLPSLEDLHKVTTFGFRGEALSALAALCDSVTVVTATKETAPM 123

Query: 118 GA--QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRR 174
           GA  ++   G  I +   VA   GT V +  LF  +P R     ++ + E +    ++  
Sbjct: 124 GAVIKLGTDGRTIDTSGRVARPRGTTVTLSGLFGPLPVRRKEFERNAKKEVSKALVLLTA 183

Query: 175 MAIAYPKVSFTFSTIK--------------SNRYKMNFQSTNGNFPERISQVIGE----- 215
            A+     S   +                 S R         G     +  V G      
Sbjct: 184 YALVPASASGQDTRNGVRLKVEMIAGGGRASKRSIHLMTDGKGPLRSSVGAVWGPSALDN 243

Query: 216 -------------DFINNAVELNEKSNEITLQGYTGIPTFNRGNAN--QFYVFINGRTVQ 260
                          +     + E+   + ++G      +  G +   + + +INGR   
Sbjct: 244 VEDIDLSLEVEIDKVMARREGITERMQTVKVKGLISSAKWGCGFSTSSRQFFYINGRPCN 303

Query: 261 DKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQ 320
              +   I   Y       + P+V+L  +I    VD+NV P K  I   +   + + +  
Sbjct: 304 LTKVARAINEVYKSF-NTNQLPLVILDFKIPTESVDINVSPDKRTIFVHSEDCLIDSLKT 362

Query: 321 SIQKAINKKGISTSSVLSKKMISSFHQDNAPKT-HLPKYATSLTNTQEKLFLQENRLSTN 379
           +++        + +   + + + S  +D +  +    +     + TQE     E +    
Sbjct: 363 ALESFFAPSRNTFTVEGASRTVKSIRRDQSHTSLKRSQPNEESSQTQEGNASLEGQEGER 422

Query: 380 DLLPSDDPTYS 390
            +    + + +
Sbjct: 423 QIASDVEASEN 433



 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 14/199 (7%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            + E    +       I         TD L I+DQHA+ E+  FE ++    +TKI +Q 
Sbjct: 802 ADFEKMEVKGQFNKGFIIARLQSDNGTDDLFIIDQHASDEKYNFETLQ---QTTKIKAQA 858

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFG-PNAIAIREIP----AILSK 506
           L+ P  + L  G+  + ME+ + L+  G        +  G    I++  IP     +   
Sbjct: 859 LIKPRALHLTAGDEIVAMENIDILNANGFDVHVDETKPAGRGERISLLAIPVSKETVFDF 918

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
           K++ QLL+ ++ +    S       +   + A+ AC  S+  G+ +   +M++LLR M  
Sbjct: 919 KDLEQLLQ-LLSDDSRPSGQMVRCMKARAMFASRACRKSVMIGKTLTKSQMSQLLRNMGT 977

Query: 567 NPNSSQCNHGRPTFIKLKL 585
                 C HGRPT   L  
Sbjct: 978 IDQPWNCPHGRPTMRHLTQ 996


>gi|224012369|ref|XP_002294837.1| hypothetical protein THAPSDRAFT_264783 [Thalassiosira pseudonana
           CCMP1335]
 gi|220969276|gb|EED87617.1| hypothetical protein THAPSDRAFT_264783 [Thalassiosira pseudonana
           CCMP1335]
          Length = 919

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 144/357 (40%), Gaps = 31/357 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +S   I QI AG+ I   S A+KEL++N++DA+++RV   +   G    Q++DNG 
Sbjct: 2   TIKPISSTAIQQIVAGQAITDLSSAVKELVDNAIDAKATRVCVKLYNQGLESIQVSDNGT 61

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
           G+     P+   +H TSK+   DD     T GFRGEAL  +  VS  LT+ +R   ++T 
Sbjct: 62  GVPKSSRPLMAMKHATSKLREFDDLYTAPTLGFRGEALFCLANVSRSLTVSTRSSDDDTN 121

Query: 119 AQIAISGEKISSV-------------RPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVE 164
              + S                    + V    GT V V  LF T+P R  +  K  + +
Sbjct: 122 TITSSSNGLGEQFAFNHEGGLISTSVQRVPRGMGTTVVVEGLFETLPVRRVDLCKRIKGQ 181

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIK--------SNRYKMNFQSTNGNFPERISQVIGED 216
              +  V++  AI      F  + +          +  ++    ++    +R + V+G  
Sbjct: 182 RMKLLRVLQGYAILCLGTQFNLTDVNAPNSKSKCKSDVRLATSESSNTLEQRTASVLGTK 241

Query: 217 FINNAVELN---EKSNEITLQGYTGI---PTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
           F++    +      +    ++G          +    +  +  INGR V    +   +  
Sbjct: 242 FLSGLTRIEINLHSATRWKMEGLVSHAPTSPHSATARDLQFFSINGRPVDLPTVSRVLGD 301

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            +       R P  VL   +     DVN+ P K  + F     I   I + + K  +
Sbjct: 302 VWRLGSGGRRRPACVLAFTLPNNMYDVNLSPDKREVLFTEEASISELIREGLTKLWS 358



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 24/230 (10%)

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHA 433
             +      + +P  ++D+D         +       Q +  +I+++T D  L I+DQHA
Sbjct: 679 EQNERQQKTNREPQRAQDSDSTVNLSKEDFLRMSIIGQFNLGFILARTPDHNLFILDQHA 738

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ER 489
             E+  FE++   F  T I  Q L+ P  ++L   E   +++H E   R G +     ++
Sbjct: 739 CDEKYNFERL---FKETVIHEQKLIAPLPLELSPSEEHCVLDHMEVFERNGFRFSYDPDK 795

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIE--------------- 534
              + +++  +P   S +   + +  +   +    T   +    E               
Sbjct: 796 EPRHRLSLTALPHSGSVQFGKEDVGALCAMLGADGTYAGMAGSQEGSIKSVDGILGSSIA 855

Query: 535 -NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + A+ AC GSI  G  +   E   +L++++K      C HGRPT   +
Sbjct: 856 IAMFASRACRGSIMIGTALSHKEQMNILKKLDKTDIPWNCAHGRPTMSHI 905


>gi|1465764|gb|AAC52672.1| similar to human MLH1 on chromosome 3p21 [Mus musculus]
          Length = 151

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/144 (41%), Positives = 94/144 (65%), Gaps = 3/144 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E ++N+IAAGE+I+RP+ AIKE+IEN LDA+S+ ++ V+  GG    QI DNG G
Sbjct: 8   IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTG 67

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E++ +  +R  TSK+   +D ++I T+GFRGEAL SI  V+H+T+ ++        +
Sbjct: 68  IRKEDLDIVCERFTTSKLQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYR 127

Query: 121 IAISGEKIS-SVRPVAMNPGTIVE 143
            + S  K+    +P A N GT++ 
Sbjct: 128 ASYSDGKLQAPPKPCAGNQGTLIT 151


>gi|197127289|gb|ACH43787.1| putative postmeiotic segregation increased 2-like 6 [Taeniopygia
           guttata]
          Length = 267

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR +    +++I +G+++     A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 14  IRPIDRGSVHRICSGQVVLSLGTAVKELVENSLDAGATNIDIKLKDHGAELIEVSDNGVG 73

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +HCTSKI D  D  ++ TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 74  VEEENFEGLTLKHCTSKIQDFSDLIHVETFGFRGEALSSLCALSDVTIFTCHKSAKVGTR 133

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      +I+   P+    GT V ++ LF+T+P R   F ++ + E   +  +++   I 
Sbjct: 134 LVFDHNGRITQKAPLPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEYAKMVQLLQAYCIV 193

Query: 179 YPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
              V    +    +  +  +   + + +    I  V G++ + + +  
Sbjct: 194 SKGVRINCTNQVGQGKKTCVISPAGSPSLKGTIGAVFGQNQLQSLIPF 241


>gi|319790006|ref|YP_004151639.1| DNA mismatch repair protein domain protein [Thermovibrio
           ammonificans HB-1]
 gi|317114508|gb|ADU96998.1| DNA mismatch repair protein domain protein [Thermovibrio
           ammonificans HB-1]
          Length = 476

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 34/317 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L  +++ +IA+G+I   P+  +KELIEN+LDA++S V+  +       F+++DNG G
Sbjct: 2   IKRLPREVVARIASGQIASSPAAVLKELIENALDAKASEVKVQVETP--FNFRVSDNGIG 59

Query: 63  MTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +   E+P+AV+R  TSKI   ++   + ++GFRGEAL +I   S L + SR      G +
Sbjct: 60  IPYRELPLAVERFTTSKIFSVEELERVTSYGFRGEALFAISQFSTLEIKSRHEAEEVGGK 119

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           + ++  ++    P+    GT V V +LFF +P R     + Q E +L+  +  R A+A P
Sbjct: 120 LVVTAGEVKEYSPIPFRRGTTVTVSNLFFNVPVRRKA--TSQKERSLMERLTLRYALANP 177

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            V+F F         +   S      ER+ QV         +E +  +            
Sbjct: 178 HVTFKF-----GELTLPATS----LKERLIQVTRGKPKFQLIEGDGVTL----------- 217

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
            F+R       +F+N R V    +   +     +          VL +E+ P +VD NV 
Sbjct: 218 FFSREERGPRELFVNRRPVSVPEVERLLEEFGVK--------AFVLFMELPPEEVDFNVS 269

Query: 301 PAKSYIRFRNPTIIRNF 317
           P K  + F++   ++  
Sbjct: 270 PLKEKVLFKSERGVKAL 286



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 32/212 (15%)

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
           +  ++     V+ ++A      I         +I+         DQH  HER+ +E++ +
Sbjct: 291 EGEFNLPKPSVQRAKAEEDTGPIELIGSDGTVLIAHDRKFYYFFDQHLIHERVNYEELLK 350

Query: 446 DFNSTKITSQTLLTPEIIDLL--EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
              + K+    L+ P  + +   E   A+   + E                + + E P +
Sbjct: 351 ALFAGKVKKVKLVPPVTVPVTVKEKLDAIHAVYAE------------SEKGLTVYEAPEL 398

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS-IEMNRLLR 562
           ++ + I +L             +  L+       A++AC  ++++G   +   E+  L  
Sbjct: 399 ITPEEIKKL------------ESQPLETV-----ASVACRRAVKAGYVFKEFKELESLFN 441

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              +     +C HGRP + K++   I    GR
Sbjct: 442 RYLRCAEKERCPHGRPIYYKVRKQVIYSHLGR 473


>gi|242014680|ref|XP_002428013.1| DNA mismatch repair protein pms1, putative [Pediculus humanus
           corporis]
 gi|212512532|gb|EEB15275.1| DNA mismatch repair protein pms1, putative [Pediculus humanus
           corporis]
          Length = 947

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 179/417 (42%), Gaps = 22/417 (5%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M   KL    +  + + ++I   S A+KEL+ENS+DA    ++  +   G    ++ DNG
Sbjct: 1   MTFEKLPSATVKLLTSSQVITSVSTAVKELLENSIDAGGKIIQVRLENYGLDLIEVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ + +        TSKI   +D   ++T+GFRGEAL +I  +S +++ ++   +   
Sbjct: 61  LGVSYDNVQKMFLPGYTSKIKQFEDLDTLNTYGFRGEALAAICKLSKVSISTKTSTDTLA 120

Query: 119 AQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPARLNF---LKSEQVETNLITDVIRR 174
               I    +  S +P  +N GT + + +LF  +P R ++    K    +      +++ 
Sbjct: 121 MTYIIDENGVPLSSKPTHLNNGTSITITNLFSNLPVRKSYLSVKKRLGDDLKKTEQIVQS 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +++ +P+++ +    K   +K N         +   QV     ++    +++  N I ++
Sbjct: 181 LSLIHPELNVSLIHNKCIVWKKNSVKG---LKQSFMQVASLKTVSKMDHISKLINNINIE 237

Query: 235 GYTGIPTFNR------GNANQFYVFINGRTVQDKFILSTIRTAYAETIPL----GRYPVV 284
                            ++N  YV++N R V    +   I+              +Y +V
Sbjct: 238 LIVPKKNLENVDDIFTNSSNGIYVYVNKRPVTCSELSQPIQEHIFYHYSKLNLTYKYSIV 297

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           +L +++  +++DVN+ P K+ I  +N   + N I   +    N      S+++   +  S
Sbjct: 298 LLSIDMPSQEIDVNLEPNKTKILLKNKMYLINCIDDILSNYYNNGNFHCSALIEDLVNES 357

Query: 345 F---HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEE 398
           F   + +   +TH      S     +KL L  + ++   +   ++   +   + V +
Sbjct: 358 FTVNNTNEISQTHNDDDEISKERQNKKLKLDVDEITEPVVKKINNDNNANCTESVNK 414


>gi|313222327|emb|CBY39275.1| unnamed protein product [Oikopleura dioica]
          Length = 152

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 2/140 (1%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IRKLS+ +IN+IAAGE+++RP+ AIKELIENS+DA +  ++     GG   F I D+G
Sbjct: 1   MPIRKLSQDVINKIAAGEVVQRPANAIKELIENSIDAGAKSIKIKTKKGGLEMFSIEDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  E++P+A  R  TSK+ +  D  +I +FGFRGEAL SI  V HLT+ S+P      
Sbjct: 61  CGIAMEDLPLAGVRFATSKLQEYTDLKDIGSFGFRGEALASISHVGHLTITSKPASQQVA 120

Query: 119 AQIAISGEKISSVRPVAMNP 138
            +++  G K +         
Sbjct: 121 YKLSFDGGKANGESNTFSRK 140


>gi|22204216|emb|CAD43468.1| novel protein similar to human postmeiotic segregation increased
           1-like protein (PMSL1) [Danio rerio]
          Length = 194

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 100/193 (51%), Gaps = 6/193 (3%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           + L  + +  + + ++I      +KELIENSLDA SS +E  +   G    ++ DNG G+
Sbjct: 2   KALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++ +   +H TSKI   +D   + T+GFRGEAL SI A+S + + ++   ++   Q 
Sbjct: 62  KATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTVDDDFSIQY 121

Query: 122 AISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
           ++    +I S +P  +  GT V   +LF  +P R  +    K  + E   + +++   A+
Sbjct: 122 SVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAV 181

Query: 178 AYPKVSFTFSTIK 190
             P++  T S  K
Sbjct: 182 IKPELRVTLSHNK 194


>gi|156045193|ref|XP_001589152.1| hypothetical protein SS1G_09785 [Sclerotinia sclerotiorum 1980]
 gi|154694180|gb|EDN93918.1| hypothetical protein SS1G_09785 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 912

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 155/373 (41%), Gaps = 35/373 (9%)

Query: 27  IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDF 84
           +KEL+ENSLDA ++ ++      G    ++ DNG G++         +H TSK+S  +D 
Sbjct: 3   VKELVENSLDAGATSIDVRFKNQGLEAIEVQDNGGGISPHNYDTLALKHHTSKLSTYNDL 62

Query: 85  SNIHTFGFRGEALPSIGAVSHLTLMSR-PPQNNTGAQIAISGE-KISSVRPVAMNPGTIV 142
           + + TFGFRGEAL S+ A+S  ++++  P     G ++      K+ S   VA   GT V
Sbjct: 63  TTLQTFGFRGEALSSLCALSSFSVITCLPENAPKGTKLEFEISGKLKSTSVVAAQKGTTV 122

Query: 143 EVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQST 201
            V +LF  +P R     K+ + E   +T V+ + A     + FT S   +   K    ST
Sbjct: 123 IVENLFNNLPVRRRELEKNIKREWGKVTGVLGQYACIQTGIKFTVSQQAAKGKKTTIFST 182

Query: 202 NGN--FPERISQVIGEDFINNAVELNEK--------------------SNEITLQGYTGI 239
            GN    E I  V G   +   + ++ +                    + +I + G+   
Sbjct: 183 KGNPTTRENIVNVFGAKTLTQLISMDLRLELEPTSGPGQRWSTGNDGGTKDIRIIGHISR 242

Query: 240 PTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG--RYPVVVLLLEIDPRQV 295
           P     R   ++  +F+N R      +       Y      G  + P +   +E+D    
Sbjct: 243 PASGEGRQTPDRQMLFVNSRPCGLPQVAKAFNEVYKSYNGWGSTQSPFIFANIELDTHLY 302

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           DVNV P K  I   + + +   +    + A+ +   S    +    + +  Q    +  +
Sbjct: 303 DVNVSPDKRTILLHDQSRMLENL----KMALAELFESQDHTMPVSQLPAQKQPQYKQLTI 358

Query: 356 PKYATSLTNTQEK 368
            + A  ++ T ++
Sbjct: 359 DREAAGVSETSQR 371


>gi|317406928|gb|EFV86990.1| DNA mismatch repair protein [Achromobacter xylosoxidans C54]
          Length = 237

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 131/222 (59%)

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
           E+  +  + L        +            + LG+A  Q+H  YI++Q   G+V+VD H
Sbjct: 14  EDTAARVEPLRDVAALAPQAAPAPTLPADEEHPLGMALGQLHGIYILAQNRRGMVLVDMH 73

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHER+++E+++Q  ++  +  Q LL P +    E + A++ E +E L  LG +    GP
Sbjct: 74  AAHERVVYEQLKQALDARSLPRQDLLVPVVFHAQEKDVAVVEEFEEQLEDLGFQMRPSGP 133

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
            +IA+R +PAIL++ +I  L R ++ ++     +  L ++   +L+TMAC+GS+R+ RK+
Sbjct: 134 TSIAVRSVPAILARGDIETLARAVLRDLAGVGVSRLLTEQRNELLSTMACHGSVRANRKL 193

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EMN LLR+ME    + QCNHGRPT+++  +SD++KLF R
Sbjct: 194 TIEEMNGLLRQMEATERADQCNHGRPTWVQWSVSDLDKLFLR 235


>gi|221502098|gb|EEE27844.1| DNA mismatch repair protein, putative [Toxoplasma gondii VEG]
          Length = 1314

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 27/222 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L   ++  IAAGE++ RPS A+KEL+EN+LDA SS +   +  GG     ++D+G 
Sbjct: 240 QIRRLDPSVVQLIAAGEVVLRPSSALKELLENALDARSSSISVSVHNGGFKLLAVSDDGC 299

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  QR  TSK+    D   ++TFGFRGEAL S+  V  + + +R      G 
Sbjct: 300 GIHPQDLTILCQRFTTSKLKALSDLRCMNTFGFRGEALASLAVVGQVDVTTRIASLPHGY 359

Query: 120 QIAISGEKISSVRP-------------------------VAMNPGTIVEVRDLFFTIPAR 154
           + +    +                                A + GT + V  LF   P R
Sbjct: 360 RCSYDKGEPILSSDSASSSASASSASSSSTLQVPAGVSVAARSRGTTLRVSRLFHAFPER 419

Query: 155 LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196
              L S Q E     DV  R AI  P + FT       +   
Sbjct: 420 RKMLASPQEEYAKCLDVCMRYAIDNPHIKFTCRRQDKTQTDF 461



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%)

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
             ++++ GY    +        F +FINGR V    +  ++   Y E +P G    V L 
Sbjct: 675 QCQVSVWGYASRISAGVKPPGTFILFINGRLVDAPALRKSVEGVYQELLPRGLKAWVYLS 734

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
           L + P  +DVNVHP K  ++      +   + +  ++ +  +  S 
Sbjct: 735 LTLPPWLIDVNVHPTKQRVQLLYEDFVAANLAKHFRERLGSQASSQ 780


>gi|307102530|gb|EFN50802.1| hypothetical protein CHLNCDRAFT_28710 [Chlorella variabilis]
          Length = 235

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 5/198 (2%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           +RP+ A+KE++ENSLDA ++++   +  GGK+  QI DNG G+  +++P+  QRH TSK+
Sbjct: 2   QRPASALKEMLENSLDAGATQIIVTVKDGGKALLQIQDNGHGIRKDDLPILCQRHTTSKL 61

Query: 81  S--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE--KISSVRPVAM 136
              +D   I T GFRGEAL SI  V+ L++ +       G + + +    +    RP A 
Sbjct: 62  REFEDLLGIQTLGFRGEALASISFVARLSVTTMTEGAVHGWRASYTDGVLEAPGPRPTAA 121

Query: 137 NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196
           N GT++ V DLF+ +P R   LK    E   I DV+ R A+    VS T       R  +
Sbjct: 122 NRGTLISVEDLFWNVPLRKKALKGVGEEYRHILDVMGRYAVYKAGVSLTCKRQGEARSDL 181

Query: 197 NFQSTNGNFPERISQVIG 214
           +  +      + I  V  
Sbjct: 182 HTLAGASRL-DCIRCVWP 198


>gi|325524965|gb|EGD02892.1| DNA mismatch repair protein [Burkholderia sp. TJI49]
          Length = 274

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 70/200 (35%), Positives = 111/200 (55%)

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
           P+  +      LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       +  
Sbjct: 73  PIAGTAHDEQPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKNALADRTVAV 132

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P  +     E   + E  + L  LG       P  +AIR +PA+L   ++  L R
Sbjct: 133 QPLLLPVSMTATPVEIGTVEEERDTLESLGFDLAVLSPTTLAIRAVPALLKDADLQALAR 192

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            ++ ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCN
Sbjct: 193 AVLADLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCN 252

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+ +L L+D+++LF R
Sbjct: 253 HGRPTWYQLTLNDLDRLFMR 272


>gi|71006946|ref|XP_758079.1| hypothetical protein UM01932.1 [Ustilago maydis 521]
 gi|46097153|gb|EAK82386.1| hypothetical protein UM01932.1 [Ustilago maydis 521]
          Length = 971

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 152/371 (40%), Gaps = 47/371 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR +    +++I +G+++     A+KEL+EN+LDA ++ +       G   F++ DNG G
Sbjct: 23  IRAIPSHDVHRITSGQVVLDLQTAVKELVENALDASATNIAVNFRDYGADSFEVVDNGTG 82

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGA 119
           + +        +H TSK+S   D S + TFGFRGEAL S+ A++ +T+ +        G 
Sbjct: 83  IDASNYANVALKHYTSKLSSFSDLSLVRTFGFRGEALSSLCALAKVTIHTATSDQAPMGT 142

Query: 120 --QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMA 176
             Q+  SG+  S     A   GT + V  LF  +P R     K+ + E     ++++  A
Sbjct: 143 ILQLGKSGKVESDTGRAARQRGTTIIVEGLFKVLPVRRKEFEKNLKREYTKTQNLLQAYA 202

Query: 177 IAYPKVSFTFSTI-----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN------ 225
           +    V +T +       K+ ++ +N  +++      +S + G   +   + LN      
Sbjct: 203 LITKGVRWTSTNTPAGGRKTPQFSVNSSTSDNYLSANVSALFGAKVVPTLMPLNLELTFS 262

Query: 226 ---------------------------EKSNEITLQGYTGIPTF--NRGNANQFYVFING 256
                                      ++S+ + + G    P     R ++++ + +ING
Sbjct: 263 VARSPNKLIQHTVEAHGDNDDEEILPGDESSTVNVMGLISKPIHGSGRTSSDRQFFYING 322

Query: 257 RTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316
           R      +       Y        +P V     +     DVN+ P K  I       +  
Sbjct: 323 RPWDAGRVGRAFNEVYKSYNSNH-FPFVAADFRLPTDSYDVNITPDKRTIFLHEENRLIE 381

Query: 317 FIIQSIQKAIN 327
            + Q++++   
Sbjct: 382 KVKQALEELFA 392



 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 105/315 (33%), Gaps = 25/315 (7%)

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
           ++   +     HP        +  +       S + A  +K  + S ++  + I SF  D
Sbjct: 631 DMSSEEDLEFDHPVAQVAAIDDDQVECADEPLSNKFASMRKDAAVSDLIEHEQIISFDLD 690

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
              +  L +   S + T   L   E           +      +           +    
Sbjct: 691 RLQQRLLQRRTPSWS-TPSGLPASEREELLQGAGVENQDEAQVERALSRVIHKDDFAAME 749

Query: 409 ACAQIHQNYII----------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
              Q +  +II          S   D L IVDQHA+ E+  FE ++       I SQ L+
Sbjct: 750 VIGQFNLGFIIARRRTRPDSSSHDMDDLFIVDQHASDEKFNFETLQLTTQ---IRSQKLI 806

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERF-----GPNAIAIREIPAILSKKNIPQLL 513
            P  ++L   +  + +EH E L   G           G  A  +   P   +     + L
Sbjct: 807 VPRPLELSASDELVAIEHQETLLSNGFDISVSETGLPGTRAKLV-AQPISKATVFGVKDL 865

Query: 514 RDIIDEIIDSSTTY-----TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
            +++  + D+S            +   + A+ AC  SI  G  +    M  +L  M    
Sbjct: 866 EELLYLLRDTSAGSEAARSIRCSKARAMFASRACRKSIMIGTALTRGRMKSVLNNMGTIE 925

Query: 569 NSSQCNHGRPTFIKL 583
               C HGRPT   L
Sbjct: 926 QPWNCPHGRPTMRHL 940


>gi|134109737|ref|XP_776418.1| hypothetical protein CNBC4730 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259094|gb|EAL21771.1| hypothetical protein CNBC4730 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1018

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 43/415 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +   +I++I +G+++     AIKEL+ENSLDA ++ ++  I   G    ++ DNG G
Sbjct: 5   IKAIDTSLIHRIHSGQVVLDLQSAIKELLENSLDAGATAIDVRIKDNGLDSIEVVDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQ-NNTG 118
           +   +      RH TSK+   +D   + TFGFRGEAL ++ A+   +T+++   +    G
Sbjct: 65  IAEADWESIALRHHTSKLPSLEDLHKVTTFGFRGEALSALAALCDSITVVTATKETAPMG 124

Query: 119 A--QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
           A  ++   G  I +   VA   GT V +  LF  +P R     ++ + E +    ++   
Sbjct: 125 AVIKLGKDGRTIETSGRVARPRGTTVTLSGLFNPLPVRRKEFERNAKKEVSKALVLLTAY 184

Query: 176 AIAYPKVSFTFSTIK--------------SNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
           A+     S   +                 S R         G     +  V G   ++N 
Sbjct: 185 ALVPASASVQDARNGVRLKVELTAGGGRASKRSIHLMTDGRGQLRSSVGAVWGPSALDNV 244

Query: 222 VELN------------------EKSNEITLQGYTGIPTFNRGNAN--QFYVFINGRTVQD 261
            ++N                  E++  + ++G      +  G +   + + +INGR    
Sbjct: 245 EDINLRLEVEIDRVMARREGITERTQTVEVKGLISSAQWGCGFSTSSRQFFYINGRPCNL 304

Query: 262 KFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
             +   I   Y       + P+ +L  +I    VD+NV P K  I   +   + + +  +
Sbjct: 305 TKVARAINEVYKSF-NTNQLPLAILDFKIPTESVDINVSPDKRTIFVHSEDCLIDSLKTA 363

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDN-APKTHLPKYATSLTNTQEKLFLQENR 375
           ++        + +   + + I S  +D+  P     + + ++  TQ++    E +
Sbjct: 364 LESFFAPSRNTFTVEGASRTIKSVRRDHSHPSLKQSQRSQAINQTQQEDASLEEQ 418



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 29/311 (9%)

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
             +  P ++     +  I++  + Q ++     +    S+    ++I  F      K   
Sbjct: 692 STSCDPQRTSASSSSSPIVKPRVSQRLKPDKAYRDEIISTAPQGEVIMRFDLSRLRK--- 748

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIAC 410
            ++A +          + ++L     L       ++D++  EE+         ++     
Sbjct: 749 -RFANAGNRQAGAQSKRVSQLVKQGDLEEAAGIKNKDSELAEETLSRVISKADFEKMEVK 807

Query: 411 AQIHQNYIISQTT------DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            Q ++ +II++        D L I+DQHA+ E+  FE ++    +TKI +Q L+ P  + 
Sbjct: 808 GQFNKGFIIARLQSTDNGTDDLFIIDQHASDEKYNFETLQ---QTTKIKAQALIKPRALH 864

Query: 465 LLEGECALIMEHDEDLHRLGIKA-----ERFG-PNAIAIREIP----AILSKKNIPQLLR 514
           L  G+  + ME+ + L+  G        +  G    I++  +P     +   K++ QLL 
Sbjct: 865 LTAGDEIVAMENIDILNANGFDVHVDESKPAGKGERISLLAMPVSKETVFDFKDLEQLLH 924

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            ++ +    S       +   + A+ AC  S+  G+ +   +M++LLR M        C 
Sbjct: 925 -LLSDDSRPSGQMVRCMKARAMFASRACRKSVMIGKTLTKGQMSQLLRNMGTIDQPWNCP 983

Query: 575 HGRPTFIKLKL 585
           HGRPT   L  
Sbjct: 984 HGRPTMRHLTK 994


>gi|325115323|emb|CBZ50878.1| putative DNA mismatch repair protein [Neospora caninum Liverpool]
          Length = 1141

 Score =  210 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 22/217 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IRKL   ++ +IAAGE++ RPS A+KEL+EN +DA SS +   +  GG     ++D+G 
Sbjct: 62  RIRKLDLSVVQRIAAGEVVLRPSSALKELLENCMDARSSSISVTVQNGGFKLLAVSDDGC 121

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E++P+   R  TSK+    D   + TFGFRGEAL S+  V H+ + +R      G 
Sbjct: 122 GIYPEDLPILCHRFTTSKMKSLADLRCMRTFGFRGEALASLSVVGHVEVTTRIASLPHGY 181

Query: 120 QIAISGEKISSVRPVAMNP--------------------GTIVEVRDLFFTIPARLNFLK 159
           + +    +      V  +                     GT + V  LF   P R   L 
Sbjct: 182 RCSYDKGEPVLSSSVPASHSVSSGSSPVPAGVSVAARSRGTTLRVSQLFHAFPERRKMLA 241

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196
           S Q E +   +V  R AI  P + FT       +  +
Sbjct: 242 SPQEEYSKCLEVCTRYAIDNPHIKFTCKRQDKTQADL 278



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%)

Query: 223 ELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP 282
           E    + ++++ GY    +        F +FIN R V    +  +I   Y E +P G   
Sbjct: 518 EEQRNACKVSVWGYASRVSAGAKPPGTFILFINSRLVDAPALRKSIEGVYQELMPRGLKA 577

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
            V L   +    VDVNVHP K  ++      +   + +  ++ +  +  S    + +
Sbjct: 578 WVYLSFSLPAWLVDVNVHPTKQRVQLLYEDFVAAHLSRHFRERLGSQTSSQIFDVQR 634


>gi|167571112|ref|ZP_02363986.1| DNA mismatch repair protein [Burkholderia oklahomensis C6786]
          Length = 303

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 117/249 (46%)

Query: 346 HQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
            +D    T       +L            R +T                  +        
Sbjct: 53  RKDTGAGTPQGTTGAALEAHDAPDAHNPPRFATMPGGAGAATPAFSATSASDPMTHDEQP 112

Query: 406 LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      +  QTLL P  +  
Sbjct: 113 LGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTVAVQTLLIPVSMTA 172

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ ++     
Sbjct: 173 TPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLADLHAFGG 232

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L
Sbjct: 233 SRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTL 292

Query: 586 SDIEKLFGR 594
            D+++LF R
Sbjct: 293 GDLDRLFMR 301


>gi|167586246|ref|ZP_02378634.1| DNA mismatch repair protein [Burkholderia ubonensis Bu]
          Length = 209

 Score =  209 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/196 (35%), Positives = 109/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
           +      LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ +       +  Q LL
Sbjct: 12  TAYDDQPLGFALGQIHGIYVLAQNAHGLVIVDMHAAHERILYEQFKHALADRSVAVQALL 71

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  ++    E   + E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 72  LPVSMNATPVEIGTVEEERETLESLGFDLAVLSPTTLAIRAVPALLKDADLQSLARAVLA 131

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 132 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 191

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D+++LF R
Sbjct: 192 TWYQLTLGDLDRLFMR 207


>gi|312215556|emb|CBX95508.1| hypothetical protein [Leptosphaeria maculans]
          Length = 750

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 168/427 (39%), Gaps = 24/427 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS     QI +G+++  PS  +KELI+N+LDA +  +   IA       Q+ D+G G
Sbjct: 12  IAALSPTTARQIGSGQVLVDPSSIVKELIDNALDARAKSIFVDIATNAIDTIQVKDDGHG 71

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNI--HTFGFRGEALPSIGAV-SHLTLMSRPPQNNT 117
           + S++ P+  +R+CTSKI D  D   I     GFRGEAL S+  + S + + +R      
Sbjct: 72  IPSQDRPLVCRRYCTSKIRDLQDLRGIGGKWLGFRGEALSSVAEMSSSILVTTRVEGEPV 131

Query: 118 GAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
             +       ++ +V   +   GT V+V  +F  IP R     K+       I  +++  
Sbjct: 132 AVKLKFQRSGELDNVERESHPVGTTVKVTGIFEHIPVRKQTALKNASKCLAKIRHLLQGY 191

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNG---NFPERISQVIGEDFINNAVELNEKSNEIT 232
             A P V F    +K+   K NF        +  +   +V+G+D          ++    
Sbjct: 192 TFARPAVRFRLRVLKAKSDKSNFVYAPSSIVSIEDAAMKVVGKDCTLQCDWTALQAEGFE 251

Query: 233 LQGYTGIPTF--NRGNANQFYVFINGRTVQDKFIL-STIRTAYAETI-------PLGRYP 282
           +  +   PT   ++ + +  +V I+GR +  +      + TA+   +          + P
Sbjct: 252 IHAFLPKPTAIGSKVSNHGAFVSIDGRPISSRRGTVKQMVTAFKARLRKMSPSVSCVKDP 311

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI 342
            + + +   P   D N+ PAK  + F N  +I +       + +N     T+ V +   +
Sbjct: 312 FICVNIVCPPDSYDPNIEPAKDDVMFENDEVILD----VFNRLLNTYYPETAMVPANGNL 367

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
               Q               T TQE           +       P +      ++E +  
Sbjct: 368 PVSAQQRQSAEAEVLPRRMCTPTQEHDADSNPIDGASASDSHGQPPWRSSMYGIDEDDMH 427

Query: 403 HYQLGIA 409
             Q G  
Sbjct: 428 FIQDGQP 434


>gi|256077973|ref|XP_002575273.1| DNA mismatch repair protein PMS2 [Schistosoma mansoni]
 gi|238660507|emb|CAZ31506.1| DNA mismatch repair protein PMS2, putative [Schistosoma mansoni]
          Length = 808

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 161/394 (40%), Gaps = 69/394 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I +L + ++++I +G+++   + A+KEL+ENS+DA+SS++E  + G G    ++ DNG 
Sbjct: 10  TISRLDKNLVHKICSGQVVVTLASAVKELLENSIDAKSSKIEIRLRGHGSESIEVIDNGV 69

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E+      ++CTSK+S  DD S + T+GFRGEAL S+  ++ +T+ +       G 
Sbjct: 70  GIREEDFEGLTGKYCTSKLSTFDDLSCVETYGFRGEALSSLCHLAKVTIHTCALNAKIGT 129

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI---RRM 175
           ++      +I+  R +A + GT V V  LF+ +P R   L           +VI      
Sbjct: 130 KLEFDSSGQITDSRSLARSQGTTVCVNQLFYDLPVRRRHLTDPNRLPKEFAEVISLLTAY 189

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVELNEKS----- 228
            +    V  + S I      +N  S     +  + IS V G   ++N VEL +       
Sbjct: 190 CLVSIGVQISCSRIGKKGELINVISNGPSISLKDNISAVFGHAQLDNLVELEQIDTIPED 249

Query: 229 -------------NEITLQGYTGIPT--------------------------FNRGNANQ 249
                        + I + GY   P                               ++ +
Sbjct: 250 ICEEFNIKSSSIGHSIKISGYVSKPPDPSTNTSSLIGNSSPSPLLANKRRTSIGYSSSER 309

Query: 250 FYVFINGRTVQDKFILSTIRTAYAET-------------IPL----GRYPVVVLLLEIDP 292
            +++INGR      I       +                +P       +PV++LL  +  
Sbjct: 310 QFIYINGRPCDLPKITRLATDLWRRCSKEAYSSITSGISLPNRSTTSTFPVLILLFTMPT 369

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           + VD+N+ P K  +   +   +       + K +
Sbjct: 370 QSVDINLTPDKRTLLLHHENYVMALAKAVLVKTL 403



 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 143/397 (36%), Gaps = 57/397 (14%)

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL-LLEIDPRQV 295
               +  + + +Q  +  N   + D+  ++ + T   +       PV  +  +      V
Sbjct: 411 ISSLSQTKIDFDQSQIVTNCDQLNDESQVNCVSTPIHK---RHSSPVSDISCVSPKRESV 467

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI----------------------------- 326
           D+N+ P K  +   +   +       + K +                             
Sbjct: 468 DINLTPDKRTLLLHHENYVMALTKAVLVKTLFNSSGMDISSLSQTKIDFDQSQIVTNCDQ 527

Query: 327 ----NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN-DL 381
               ++    + + L    ++   ++   +     Y+  ++N    L+   N    + D 
Sbjct: 528 LNDESQVNCFSDNNLQSIEVNFSMENLRNQWKQILYSIPISNNDNNLYNIPNTTDNSIDD 587

Query: 382 LPSDDPTYSEDNDPVEESEATH----------YQLGIACAQIHQNYIISQTTDGLVIVDQ 431
              ++         +E  EA +          +       Q +  +II+Q    L I+DQ
Sbjct: 588 KHIEENIMFGKFTSIENQEAENELTTYFKKETFNSLKVIGQFNLGFIIAQHNQDLFIIDQ 647

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA---- 487
           HA+ E+  FE++     + +  SQ L+ P+ ++L      +++ + +   R G       
Sbjct: 648 HASDEKYRFEQL---SENYRFKSQPLVVPQKLNLTITNEQVLINNLDVFARNGFAFRIHS 704

Query: 488 -ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
            E  G   I++   P + +K    + + +++  + ++        R+ +ILA+ +C  ++
Sbjct: 705 DEPAGQQ-ISLVAAPMLENKLFSYRDIEEMLFVLSETCNKKCRPSRLRDILASRSCRSAV 763

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             G  +   +M R+L  M    +   C HGRPT   L
Sbjct: 764 MIGTALDHKKMKRILTNMGSMDHPWNCPHGRPTMRHL 800


>gi|126642160|ref|YP_001085144.1| methyl-directed mismatch repair enzyme [Acinetobacter baumannii
           ATCC 17978]
 gi|126388044|gb|ABO12542.1| methyl-directed mismatch repair enzyme [Acinetobacter baumannii
           ATCC 17978]
          Length = 160

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           IERPS  +KEL+ENS+DA ++ +   IA GG +  +I DNG G+  +++P+AV RH TSK
Sbjct: 2   IERPSSVVKELLENSIDAGATELIVRIAQGGSTLIEIIDNGHGIHPDDLPLAVMRHATSK 61

Query: 80  I--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS--GEKISSVRPVA 135
           I  ++D   I + GFRGEAL SI AVS LTL S   ++  G Q+ ++        V+ VA
Sbjct: 62  IKTAEDLHAIVSLGFRGEALASIAAVSRLTLTSSQDESGIGHQVEVNGTAFDHQQVQAVA 121

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
              GT + V+DLFF +PAR  FLK++ +   ++  + 
Sbjct: 122 AQKGTHIRVQDLFFNVPARRKFLKNQPLNLGILKKLY 158


>gi|260223095|emb|CBA33316.1| hypothetical protein Csp_B18440 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 206

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 113/203 (55%), Gaps = 7/203 (3%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF-------NSTK 451
           +    + LG A AQ+   YI+++   GLVIVD HAAHER+++E+++Q             
Sbjct: 2   ASEEAWPLGRAIAQLQGVYILAENNQGLVIVDMHAAHERIVYERLKQQISLTAPDGTVHP 61

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           + SQ LL P        E A    H   L+ LG++   F P  +A+R +P  L++ +  +
Sbjct: 62  LASQPLLIPATFAATPDEVATAEAHVATLNTLGLEISPFSPKTLAVRAVPTTLAQGDAVE 121

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L R ++ E+     +  +Q     IL TMAC+G++R+ RK+   EMN LLR+ME    S 
Sbjct: 122 LARSVLAELAQHDASTVIQRAQNEILGTMACHGAVRANRKLTLEEMNALLRDMEATERSD 181

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+ +L L +++ LF R
Sbjct: 182 QCNHGRPTWRQLTLKELDSLFLR 204


>gi|312385621|gb|EFR30068.1| hypothetical protein AND_00556 [Anopheles darlingi]
          Length = 878

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 154/350 (44%), Gaps = 40/350 (11%)

Query: 16  AG-EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           AG  ++   +IA+KEL+ENSLDA ++ VE  +   G    ++ DNG G+  +       +
Sbjct: 24  AGDTVVLNLAIAVKELVENSLDAGATLVEVKLREHGSELVEVADNGSGVEEKNFEGLTAK 83

Query: 75  HCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA-ISGEKISSV 131
           + TSK+ +  D  +I TFGFRGEAL S+ A+S + +++R    N   ++      +I   
Sbjct: 84  YHTSKLKEFTDLESIETFGFRGEALSSLCALSDMVIVTRHSTANHATKLTLNHEGRIQRK 143

Query: 132 RPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
            P A   GT V + +LF T+P R   F ++ + E   +  +++   +    V    +   
Sbjct: 144 EPCARPVGTTVTLTNLFSTLPVRKKEFQRNIKREFLRMCQILQAYCLVSVGVRIICTNQS 203

Query: 191 SNRYKMNFQSTNGNFP--ERISQVIGEDFINNAVE------------------------- 223
           +   K    ST G+    + ++ + G     + +E                         
Sbjct: 204 AKGAKSVIMSTPGSQRVLDNVTALFGPRQTADLLELKPAIGSNGKIQDLDESDFDESLAL 263

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 N   ++ T++GY         R + ++ + F+N R  + + I   I  AY    
Sbjct: 264 TQEEVDNFNLSQYTIEGYISSCAHGAGRSSKDRQFYFVNSRPCEPRQISKLINDAYHRY- 322

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
            + + P V L L++D  +VDVN+ P K  +      II   + +SI+K  
Sbjct: 323 NVHQQPFVYLNLKLDRSEVDVNLTPDKRMVLMNKEKIIMLAVRKSIKKTF 372



 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 7/198 (3%)

Query: 390 SEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           + +N+   E     +       Q +  +I+ +  D L IVDQHA  E+  FE +++    
Sbjct: 669 AAENELQTEITKADFAAMKIVGQFNLGFIVCRLGDDLFIVDQHATDEKYNFEDLQRT--- 725

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIPAILS 505
           T + +Q L+ P+ ++L      +++++ +     G K E  G       + +   P   +
Sbjct: 726 TVLQNQRLVVPQPLELTAVNEMVLIDNLDVFEMNGFKFEIDGAAATTRKVRLIAKPFSRN 785

Query: 506 KKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
            +   + + ++I  + D+  T     R+  + A+ AC  S+  G  +   EM RL+R M 
Sbjct: 786 WEFGKEDIDELIFMLQDAPGTVCRPSRVRAMFASRACRKSVMIGTALSVREMERLVRHMG 845

Query: 566 KNPNSSQCNHGRPTFIKL 583
           +      C HGRPT   L
Sbjct: 846 EIEQPWNCPHGRPTMRHL 863


>gi|119484968|ref|XP_001262126.1| DNA mismatch repair protein, putative [Neosartorya fischeri NRRL
           181]
 gi|119410282|gb|EAW20229.1| DNA mismatch repair protein, putative [Neosartorya fischeri NRRL
           181]
          Length = 888

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 86/353 (24%), Positives = 141/353 (39%), Gaps = 36/353 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  I +  +I  P   +KEL+ENSLDA ++ +   I+       Q+ DNG
Sbjct: 1   MPITALPQTTVRAIGSTSVISDPCSIVKELLENSLDAHATAIFIEISQNTVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G+ SE+ P   +R  TSKI+  +D   +   + GFRGEAL S   V   +T+ +R   +
Sbjct: 61  HGIPSEDHPFVCRRAFTSKIATVEDLRKLGGKSLGFRGEALASAAEVCGGVTVTTRVEAD 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G         ++ S +  + + GT V V DLF  IP R   + KS       I  +I+
Sbjct: 121 PVGFCIKYGRNGELISTQRASHSVGTTVRVTDLFKNIPVRRQTVLKSAAKTIAKIKKIIQ 180

Query: 174 RMAIAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS-- 228
             AIA P +  +   +         +     N +  +   +V G +  +  V        
Sbjct: 181 SYAIAQPTIRLSLKVLKAAGEKANWVYAPGKNASLMDAALKVAGTEAASACVTKQWPCGS 240

Query: 229 -----------NEITLQGYTGIP--TFNRGNANQFYVFINGRTVQ---------DKFILS 266
                      +   L      P   F++ N    +  ++GR +           K   +
Sbjct: 241 ESDEESGSGNDSSFQLMALLADPGSDFSKVNNAGQFFSVDGRPLSASRGIGQEISKLYKT 300

Query: 267 TIRTAY--AETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
            +R A   +  +P    P + L +       DVNV PAK  + F N   + + 
Sbjct: 301 YLRAAASRSGGLPNISDPFLCLQIRCPEACYDVNVEPAKDDVLFENQRDLLSL 353


>gi|213019775|ref|ZP_03335578.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994605|gb|EEB55250.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 124

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/112 (51%), Positives = 77/112 (68%), Gaps = 1/112 (0%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  K IN+IAAGE+IERP+  +KEL+EN++DA SS +E  I  GG++   +TDNG
Sbjct: 1   MAIILLDTKTINRIAAGEVIERPASVVKELVENAIDAGSSEIEIKIESGGRNLITVTDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSR 111
            G+  E++ +A  RH TSK+SD +   I   GFRGEALPSI AVS + L S+
Sbjct: 61  NGIEKEDLELAFMRHATSKLSDGELIEIRHLGFRGEALPSIAAVSRMKLSSK 112


>gi|331216403|ref|XP_003320881.1| postmeiotic segregation increased 2 nirs [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309299871|gb|EFP76462.1| postmeiotic segregation increased 2 nirs [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 997

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 150/409 (36%), Gaps = 27/409 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR +    + +I + +++     A+KEL+ENSLDA ++ ++      G   F+++DNG 
Sbjct: 95  TIRAIDSHSVQKITSSQVVVDLQTAVKELVENSLDAGATIIDVKFKNYGLESFEVSDNGT 154

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNTG 118
           G+  +++      H TSKIS  DD + + TFGFRGEAL S+ A++ +T+ S        G
Sbjct: 155 GIREQDLDTVGLNHHTSKISSFDDLAQVKTFGFRGEALSSLCALAKVTVQSATAATEPRG 214

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             +        + +     P   + V   F  I       K         +++    A  
Sbjct: 215 WILEFDKMGKVTSKKTCSRPPKGI-VTQFFVKIKTFQFQTKCNSQIKQNFSNIFTPKAC- 272

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
                         R+K+               V+    +       +    + ++G   
Sbjct: 273 ------NMMVDLELRFKVKPD----------RTVLRALGLPIDSTSEDLGTTVLVKGLMS 316

Query: 239 IPTFNR--GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
            P   +   + ++ + +INGR      I   +   Y +     +YPV++    +     D
Sbjct: 317 RPAHGQGRNSPDRQFYYINGRPFTPSKISKCVNEVYKQF-NTNQYPVLLANFILPSDSYD 375

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQ--KAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
           +N+ P K  I   +   +   + +     + +  +     S +  +   S    N  +  
Sbjct: 376 LNIDPNKRSIFLHSEGNLIEALRRKTSAVQTVADQDQHDQSEIGSQPCDSLDSLNHKRPR 435

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATH 403
           L + A S  N     F  E      D L             +++S + H
Sbjct: 436 LDETAMSSQNVTIDNFPSE-VTEGKDTLCKAISPSPPHETFLDKSPSHH 483



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 19/189 (10%)

Query: 400 EATHYQLGIACAQIHQNYII------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
           +   ++      Q +  +II        +TD L IVDQHA+ E+  FEK+++    TK+T
Sbjct: 793 QKADFEHMEIIGQFNLGFIIVRRIDEKHSTDDLFIVDQHASDEKFNFEKLQR---ETKLT 849

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL  +   L        ++  ++  ++G          + +   P   +       L
Sbjct: 850 GQRLLMYDPSSLCRELNGFSVQ-VDESAKVG--------ERVKLLAQPVSGNTSWDVSDL 900

Query: 514 RDIIDEIIDSSTTYTL-QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
            +++  I +  +   +   +   ++A+ AC  S   G  +   +M R++ +M        
Sbjct: 901 GELLHLITERGSNEVVRPSKTRRMMASRACRMSTMIGDSLTVKQMARIVSQMGTMDQPWA 960

Query: 573 CNHGRPTFI 581
           C HGRPT  
Sbjct: 961 CPHGRPTMR 969


>gi|167825659|ref|ZP_02457130.1| DNA mismatch repair protein [Burkholderia pseudomallei 9]
          Length = 439

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/196 (37%), Positives = 108/196 (55%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
                  LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      I  QTLL
Sbjct: 242 PMHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTIAVQTLL 301

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ 
Sbjct: 302 IPVSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLA 361

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           ++     +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRP
Sbjct: 362 DLHAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRP 421

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ +L L D++KLF R
Sbjct: 422 TWYQLTLGDLDKLFMR 437



 Score = 90.5 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 65/107 (60%)

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            + + G  G+PT +RG A+Q Y F+NGR V+DK +   +R AY + +   RYP  VL L+
Sbjct: 7   PLAVYGCAGLPTASRGRADQQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLD 66

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
           + P  VDVNVHP+K  +RFR+   I  F+  ++Q+A+ +   ++   
Sbjct: 67  LPPEAVDVNVHPSKIEVRFRDSRSIHQFVFHAVQRALARHAGASPET 113


>gi|58736993|dbj|BAD89405.1| PMS1 nirs variant 8 [Homo sapiens]
          Length = 234

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 9/230 (3%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
             P +   F   K+  ++   +S   +    +  V+G   +NN       
Sbjct: 182 LKPDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYH 228


>gi|167563964|ref|ZP_02356880.1| DNA mismatch repair protein [Burkholderia oklahomensis EO147]
          Length = 232

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 111/222 (50%)

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
             R +T                           LG A  QIH  Y+++Q   GLVIVD H
Sbjct: 9   PPRFATMPGGAGAATPAFSAMSASAPMTHDEQPLGFAVGQIHGIYVLAQNARGLVIVDMH 68

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
           AAHER+++E+ ++      +  QTLL P  +     E     E  E L  LG       P
Sbjct: 69  AAHERILYEQFKRALADRTVAVQTLLIPVSMTATPVEVGTAEEERETLDALGFDLAVLSP 128

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM 552
             +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++R+ R++
Sbjct: 129 TTLAIRAVPALLKDADLQALARAVLADLHAFGGSRVLTERQHELLGTLACHHAVRANRRL 188

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
              EMN LLR+ME    + QCNHGRPT+ +L L D+++LF R
Sbjct: 189 TLDEMNALLRQMEATERADQCNHGRPTWYQLTLGDLDRLFMR 230


>gi|167837739|ref|ZP_02464622.1| DNA mismatch repair protein [Burkholderia thailandensis MSMB43]
          Length = 274

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 72/194 (37%), Positives = 108/194 (55%)

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                LG A  QIH  Y+++Q   GLVIVD HAAHER+++E+ ++      +  QTLL P
Sbjct: 79  HDEQPLGFAVGQIHGIYVLAQNARGLVIVDMHAAHERILYEQFKRALADRTVAVQTLLIP 138

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEI 520
             +     E     E  E L  LG       P  +AIR +PA+L   ++  L R ++ ++
Sbjct: 139 VSMTATPVEVGTAEEERETLDALGFDLAVLSPTTLAIRAVPALLKDADLQALARAVLADL 198

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                +  L +R   +L T+AC+ ++R+ R++   EMN LLR+ME    + QCNHGRPT+
Sbjct: 199 HAFGGSRVLTERQHELLGTLACHHAVRANRRLTLDEMNALLRQMEATERADQCNHGRPTW 258

Query: 581 IKLKLSDIEKLFGR 594
            +L L D++KLF R
Sbjct: 259 YQLTLGDLDKLFMR 272


>gi|58264774|ref|XP_569543.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
 gi|57225775|gb|AAW42236.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 939

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 93/433 (21%), Positives = 170/433 (39%), Gaps = 45/433 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +   +I++I +G+++     AIKEL+ENSLDA ++ ++  I   G    ++ DNG G
Sbjct: 5   IKAIDTSLIHRIHSGQVVLDLQSAIKELLENSLDAGATAIDVRIKDNGLDSIEVVDNGSG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQ-NNTG 118
           +   +      RH TSK+   +D   + TFGFRGEAL ++ A+   +T+++   +    G
Sbjct: 65  IAEADWESIALRHHTSKLPSLEDLHKVTTFGFRGEALSALAALCDSITVVTATKETAPMG 124

Query: 119 A--QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
           A  ++   G  I +   VA   GT V +  LF  +P R     ++ + E +    ++   
Sbjct: 125 AVIKLGKDGRTIETSGRVARPRGTTVTLSGLFNPLPVRRKEFERNAKKEVSKALVLLTAY 184

Query: 176 AIAYPKVSFTFSTIK--------------SNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
           A+     S   +                 S R         G     +  V G   ++N 
Sbjct: 185 ALVPASASVQDARNGVRLKVELTAGGGRASKRSIHLMTDGRGQLRSSVGAVWGPSALDNV 244

Query: 222 VELN------------------EKSNEITLQGYTGIPTFNRGNAN--QFYVFINGRTVQD 261
            ++N                  E+   + ++G      +  G +   + + +INGR    
Sbjct: 245 EDINLRLEVEIDRVMARREGITERKQTVEVKGLISSAQWGCGFSTSSRQFFYINGRPCNL 304

Query: 262 KFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
             +   I   Y       + P+ +L  +I    VD+NV P K  I   +   + + +   
Sbjct: 305 TKVARAINEVYKSF-NTNQLPLAILDFKIPTESVDINVSPDKRTIFVHSEDCLIDSLKVL 363

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL-PKYATSLTNTQEKLFLQENRLSTND 380
           +       G   SS   ++M  S        + L       L++   +  L++  LST+ 
Sbjct: 364 MCS--QTTGSIPSSPHEEQMKGSITSAATLTSSLCELNEARLSSPSSQASLRQRSLSTSK 421

Query: 381 LLPSDDPTYSEDN 393
              +   T S   
Sbjct: 422 PSLNPAQTVSAIQ 434



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 29/311 (9%)

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
             +  P ++     +  I++  + Q ++     +    S+    ++I  F      K   
Sbjct: 613 STSCDPQRTSASSSSSPIVKPRVSQRLKPDKAYRDEIISTAPQGEVIMRFDLSRLRK--- 669

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES-----EATHYQLGIAC 410
            ++A +          + ++L     L       ++D++  EE+         ++     
Sbjct: 670 -RFANAGNRQAGAQSKRVSQLVKQGDLEEAAGIKNKDSELAEETLSRVISKADFEKMEVK 728

Query: 411 AQIHQNYIISQTT------DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
            Q ++ +II++        D L I+DQHA+ E+  FE ++    +TKI +Q L+ P  + 
Sbjct: 729 GQFNKGFIIARLQSTDNGTDDLFIIDQHASDEKYNFETLQ---QTTKIKAQALIKPRALH 785

Query: 465 LLEGECALIMEHDEDLHRLGIKA-----ERFG-PNAIAIREIP----AILSKKNIPQLLR 514
           L  G+  + ME+ + L+  G        +  G    I++  +P     +   K++ QLL 
Sbjct: 786 LTAGDEIVAMENIDILNANGFDVHVDESKPAGKGERISLLAMPVSKETVFDFKDLEQLLH 845

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            ++ +    S       +   + A+ AC  S+  G+ +   +M++LLR M        C 
Sbjct: 846 -LLSDDSRPSGQMVRCMKARAMFASRACRKSVMIGKTLTKGQMSQLLRNMGTIDQPWNCP 904

Query: 575 HGRPTFIKLKL 585
           HGRPT   L  
Sbjct: 905 HGRPTMRHLTK 915


>gi|238584720|ref|XP_002390649.1| hypothetical protein MPER_10039 [Moniliophthora perniciosa FA553]
 gi|215454304|gb|EEB91579.1| hypothetical protein MPER_10039 [Moniliophthora perniciosa FA553]
          Length = 481

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 137/318 (43%), Gaps = 23/318 (7%)

Query: 39  SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEA 96
           ++ +   +  GG    QI D+G G+   ++P+  +R  TSK+S   D S + T+GFRGEA
Sbjct: 1   ATSIRVTVKEGGLKLLQIQDHGCGIRKSDLPILAERFTTSKLSSFSDLSRLTTYGFRGEA 60

Query: 97  LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS--------VRPVAMNPGTIVEVRDLF 148
           L SI  V+HL+++++        +   S  K+           +P A N GT + + DLF
Sbjct: 61  LASISHVAHLSVITKTRSETCAYKAQYSDGKLVPAQVGHTAEPKPCAGNDGTTIVIEDLF 120

Query: 149 FTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPER 208
           F  P RL+ L++   E + I DV+ + AI   KVSF      S    ++  S N    + 
Sbjct: 121 FNTPTRLSALRNTSEEYSRILDVMTKYAIHNSKVSFMCKKAGSGTPDLSTVS-NSQTSQA 179

Query: 209 ISQVIGEDFINNAVELNEKSNE-------ITLQGYTGIPTFNRGNANQFYVFINGRTV-- 259
           I  + G       +     S +        T + +     +                   
Sbjct: 180 IRTLYGHAIEKELLHTTMSSPDDTKKDESWTAEVFFTNANYQAKKTVFLLFINRKYHWVT 239

Query: 260 ---QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316
              +   I   +   Y   +P G +P + L L IDPR VDVNVHP K  + F N   I  
Sbjct: 240 HHLESTRIKRALEAVYNGILPRGAFPFLYLSLNIDPRAVDVNVHPTKKEVHFLNEEHITE 299

Query: 317 FIIQSIQKAINKKGISTS 334
            I  +IQ+ + +K  S +
Sbjct: 300 QICDNIQEKLAEKSHSRA 317


>gi|313754335|pdb|3NCV|A Chain A, Ngol
 gi|313754336|pdb|3NCV|B Chain B, Ngol
          Length = 220

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 1/189 (0%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITSQTLLTPEIIDL 465
           G A AQ+   YI++Q  D L+++D HAA ER+ +EKM++       + SQ LL P     
Sbjct: 30  GFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAA 89

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              ECA + +H E L   G++    G N +A+R  P +L K ++  L RD++ E+    +
Sbjct: 90  SHEECAALADHAETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVGS 149

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           + T+      ILATM+C+GSIR+GR++   EMN LLR+ME  P S+QCNHGRPT++KL L
Sbjct: 150 SQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKLTL 209

Query: 586 SDIEKLFGR 594
            +++ LF R
Sbjct: 210 KELDTLFLR 218


>gi|308163232|gb|EFO65588.1| Mlh1-like protein [Giardia lamblia P15]
          Length = 786

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 106/583 (18%), Positives = 208/583 (35%), Gaps = 85/583 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L  + + ++AAGE+I+RP    KELIEN+ DA++  +   I+        + D G 
Sbjct: 3   PIRILDSETVAKMAAGEVIQRPFNVAKELIENATDADAPTIRLFISSNCYDLLMVCDTGH 62

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+   +  +   R  TSKI+   D  NI +FGFRGEAL SI  +S + ++S+     T  
Sbjct: 63  GIERIDYSLLCHRFATSKIATFSDIYNIQSFGFRGEALSSISYISRMIIISKTRDQPTYL 122

Query: 120 QIAIS------------GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
            + +                   +  +  +  TIV V DLF+T P R N ++S +   + 
Sbjct: 123 AVYMDGKLHFDPKILATEHTDFFINTLKSDSFTIVCVTDLFYTEPIRRNQIRSSKTSLD- 181

Query: 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERIS----------------- 210
           + +++  ++ A P   ++ S I + +       +  N  + IS                 
Sbjct: 182 MQELLISISAANPTREYSISFINNLQAIQREIQSWLNDTQHISGILSLISHTIEFGTATL 241

Query: 211 ---------------------QVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
                                Q  G       +    KS                 + ++
Sbjct: 242 HFSSTTTRYQRFLQVLTTLLNQTKGCGVEAPHIHSLVKSYPCNTCRELSFYFVEPIDHSR 301

Query: 250 FY-------VFINGRTVQDKFILSTIRTAYAETIP-LGRYPVVVLLLEIDPRQVDVNVHP 301
                    +FIN R VQ   + + +++     +         +L + +DP   D NVHP
Sbjct: 302 QDKRLINLLIFINSRRVQYPRLKNAVQSVVDIYLSAFSTIQAGILWIAVDPGGCDPNVHP 361

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL------ 355
           +K  +       I   +I  + + + +  + T+  L  +             +       
Sbjct: 362 SKERVLLLEEEAIYTAVIDMLTQHMKEHYVKTTEPLLSQPKLKLRPQLTHTDNSIHKGCH 421

Query: 356 --PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
                 +S   T   L+ Q +  ST  +   +    +         +A+           
Sbjct: 422 LTNALDSSFKGTSNPLYKQRHDPSTISIFRFEGVQRTPREREPPTIQASILCSPPPQFPH 481

Query: 414 HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALI 473
           H N    +  +  V  ++ +       ++     ++T I S  ++        + + A  
Sbjct: 482 HGNSHDQEGEERQVDTNKESKE-----DQSADISDTTTIDSAAIVQQVQEI--QAQSAEP 534

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           + +     +       FG ++   R+ P +L+  N+ +L+  +
Sbjct: 535 VNYMALFDK------EFGEHS---RKSPRVLASMNVQRLIDSL 568


>gi|326922189|ref|XP_003207334.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Meleagris
           gallopavo]
          Length = 811

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 135/366 (36%), Gaps = 48/366 (13%)

Query: 34  SLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFG 91
           SLDA+S+ ++ V+  GG    Q+ DNG G+  E++ +  +R  TSK+   +D ++I T+G
Sbjct: 130 SLDAKSTSIQVVVKEGGLKLIQVQDNGCGIRKEDLHIVCERFTTSKLQKFEDLASISTYG 189

Query: 92  FRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTI 151
           FRGEAL SI  V+H+T+ ++        + A                             
Sbjct: 190 FRGEALASISHVAHVTVTTKTADAKCAYRYASYYPSNLCCGYAIH--------------- 234

Query: 152 PARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
                                         +SF+          +   + N    + I  
Sbjct: 235 ---------------------------NSGISFSVKKQGDTVSDVRTLA-NATTVDNIRS 266

Query: 212 VIGEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
           + G       +E+  +       ++GY     ++        +FIN R V+   +   I 
Sbjct: 267 IFGNAVSRELIEVGCEDANLAFKMKGYITNANYSVKKCIFL-LFINHRLVESTALRKAIE 325

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
           T YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q ++  +   
Sbjct: 326 TVYAAYLPKSTHPFLYLSLEIAPKNVDVNVHPTKHEVHFLHEDSILERVQQHVESKLLGS 385

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
             S        +  +    +         +T+   T +K++  +   + +     D    
Sbjct: 386 NSSRMYFTQTLLPGAECSSSEVVKSATSSSTATKGTSDKVYAHQMVRTDSREQKLDAFLQ 445

Query: 390 SEDNDP 395
             +N  
Sbjct: 446 PVNNPM 451


>gi|300813973|ref|ZP_07094267.1| MutL C-terminal dimerization domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300511914|gb|EFK39120.1| MutL C-terminal dimerization domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 415

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 98/416 (23%), Positives = 177/416 (42%), Gaps = 39/416 (9%)

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
           +   N +E +  S    ++ Y       R + N  Y++INGR V ++ I   I   Y   
Sbjct: 1   EIATNLIENSFSSENYKIRAYFSNNKLFRSSRNHQYIYINGRYVTNREISREIEKVYKSL 60

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI--------- 326
           IPL R+PV +L ++I+   +DVN+HP K  ++  N   +   + + +++ +         
Sbjct: 61  IPLNRFPVFILFIDINSSLIDVNIHPKKHEVKLSNENNLIAILCEMVEEVLYPNRSIREI 120

Query: 327 -----------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENR 375
                      +     ++  L      ++   +           S     +   + E  
Sbjct: 121 EDEPKVNLNVFDIFDDKSNDNLINFKEPAYEPSDNYIKEFDIDNQSFHENYQPFDVYEEN 180

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQLG---------------IACAQIHQNYIIS 420
              N+ + + +    + N+    S   + +                      +   +II 
Sbjct: 181 ADNNNDIDNIEENTKDFNNYNIPSLEQYQEDSFLNDKEVIDSNLINTRIVGILFDTFIIL 240

Query: 421 QTT--DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           +    D + +VDQHAAHER+++EK ++ + ++ I SQ LL PEII+L   E   I ++  
Sbjct: 241 ENKNKDLIYLVDQHAAHERVMYEKYKKQYLNSNINSQVLLKPEIIELNASEYMKIEKNFH 300

Query: 479 DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
               LG   + FG N+I +RE+P I         +RDIID + D   +    D  + +  
Sbjct: 301 LFKDLGFSIDSFGENSIILREVPMIFGFPTYVSFIRDIIDSLDDKIYSNYQADMWKVM-- 358

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
             AC  ++++G  + ++E+  L+  +    N   C HGRPT I +K + I KLF R
Sbjct: 359 KKACLKAVKAGDTLSNMEVKELINSLIHCENPYTCPHGRPTIIDIKKTTIAKLFLR 414


>gi|58736989|dbj|BAD89403.1| PMS1 nirs variant 6 [Homo sapiens]
          Length = 248

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 14/247 (5%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
             P +   F   K    +++ Q       E I  +I          +  +      +   
Sbjct: 182 LKPDLRIVFVHNKGEAVRLSRQLPMYLSKEDIQDIIYR--------MKHQFGNEIKECVH 233

Query: 238 GIPTFNR 244
           G P F+ 
Sbjct: 234 GRPFFHH 240


>gi|291221411|ref|XP_002730726.1| PREDICTED: MutL protein homolog 1-like [Saccoglossus kowalevskii]
          Length = 1476

 Score =  206 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 152/352 (43%), Gaps = 27/352 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS+++ +++ +G  I   +  ++EL+ NS+DA ++ +   +         + DNG 
Sbjct: 10  TIQPLSDEVRSRLRSGIAITSLTQCVEELVLNSIDANATCIAVRVDIP-CYKVHVIDNGT 68

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTG 118
           G+T E++ +  QR+ TSK  +  D  N+  +GFRGEAL SI  V   L ++S+   +N  
Sbjct: 69  GITVEQMKLIGQRYATSKCHNIQDLENLSYYGFRGEALASICDVTGVLEIVSKAKSSNCT 128

Query: 119 AQIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                   K   V          GT + V D F+ +P R   + S  +E   +   +  +
Sbjct: 129 YCKLFKNGKPLEVFKAEKPRPSQGTTITVHDFFYNLPVRRKTM-SPVLEFERVRQCLEGI 187

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+  P VS +     +    +    ++        Q+ G        E+    NE T+ G
Sbjct: 188 ALMRPFVSLSLRNDYTGVKTLQTHKSDSIL-GTFGQLFGVGKARIMKEMQYSYNEFTIIG 246

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTI------------RTAYAETIPLGR--- 280
           + G  T    N N  ++++NGR +    +   +            RT   E     R   
Sbjct: 247 HIG--TDGHTNKNIQFIYVNGRLLLKTKLHKVVNVLLSKSVIVKSRTGMCEIPSPSRGSD 304

Query: 281 -YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
            +P+ VL ++    + D+ + P+K+ + F++   I   +   I + + ++ +
Sbjct: 305 LHPMFVLNIQCPLSEYDICLEPSKTLVEFKDWDGILLCLENFILEFLKRENL 356



 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 111/303 (36%), Gaps = 29/303 (9%)

Query: 318  IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
            I     + + K+    +S       +   +         ++   +    E      +   
Sbjct: 1147 IGTIWDEHLVKQSEDVASKWRDDKTNKISESKDVAELFAEWENPMFAVPESCISDASNQP 1206

Query: 378  TNDLLPSDDPTYSEDN---DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAA 434
             +          ++       ++  +          A + +    +   + LV++DQHAA
Sbjct: 1207 VSRQSVRIRGAINQYKFTKAMLDNIKMCGQVDDKFIACLVKTTDKTDEPNLLVLIDQHAA 1266

Query: 435  HERLIFEKMRQDFN----------STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            HER+  E++  D            S KI S  ++    I L  GE  ++     ++ +LG
Sbjct: 1267 HERVRLEQLTADVYDDSKDDEDPISRKIRSSRVIPAVTIILTPGEIRIMEAFKSNIEKLG 1326

Query: 485  IKAERFGPNAIAIREIPAILSKKNI---------------PQLLRDIIDEIIDSSTT-YT 528
            +     G + I I  +PA L ++ +                 LL++ ID +  +S     
Sbjct: 1327 VTFNITGSDIIEIHTLPACLMEREVNEVKRGRQPVALSIVETLLKEHIDLLQKTSGACAV 1386

Query: 529  LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
            L   +  +L + AC+G+I+ G  +   E   L+R +       QC HGRP+ + +   DI
Sbjct: 1387 LPRTLTKVLNSQACHGAIKFGDALDHHECTSLIRSLSHCDLPFQCAHGRPSLMPIIDLDI 1446

Query: 589  EKL 591
             + 
Sbjct: 1447 LRK 1449


>gi|58737039|dbj|BAD89428.1| postmeiotic segregation increased 2 nirs variant 4 [Homo sapiens]
          Length = 183

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 15  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 74

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 75  VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTR 134

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +      KI    P     GT V V+ LF T+P R    +  
Sbjct: 135 LMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRN 176


>gi|317139577|ref|XP_001817615.2| DNA mismatch repair protein [Aspergillus oryzae RIB40]
          Length = 898

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 140/365 (38%), Gaps = 37/365 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L    +  I +  +I  P   +KEL++N+LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPITALPPTTVRAIGSTSVIADPCSVVKELLDNALDASATSIGIEISSNAVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G++S++  +  +R  TSKI   +D   +   + GFRGEAL S   VS  +T+ +R    
Sbjct: 61  HGISSDDHALVCKRTFTSKIQTVEDLRTLGGKSLGFRGEALASAAEVSGGVTITTRVEAE 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G         ++ S +  +   GT V +  LF  IP R     KS       I  +I+
Sbjct: 121 MVGTSIKYGRNGELISSQRASHPVGTTVRITGLFKHIPVRRQSALKSAVKTLARIKKLIQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNEKSNE 230
             A+A P    +   +K+     N+    G      +   ++ G D  ++ V     S  
Sbjct: 181 IYAMAQPSKRLSLKVLKAKNENNNWIYAPGRDAMITDAALKIAGTDVTSSCVLKKWPSEH 240

Query: 231 ITLQGY----------------TGIPTFNRGNANQFYVFINGRTV-QDKFILSTIRTAYA 273
               G+                       + +    ++ I+GR +   + I   I   Y 
Sbjct: 241 NVNSGHPQEEHTSEVGLLALLLDLDTDCTKLSNAGQFLAIDGRPISSSRGIGQDISKLYK 300

Query: 274 ETI----------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
             +          P    P + L ++      DVN+ PAK  + F +   + + +    +
Sbjct: 301 SYLRSALSRSESSPSITDPFLCLHIQCPQGSYDVNIEPAKDDVLFEDSQRLISLVEDLFR 360

Query: 324 KAINK 328
               +
Sbjct: 361 SMYGE 365


>gi|115401604|ref|XP_001216390.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114190331|gb|EAU32031.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 669

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 129/340 (37%), Gaps = 16/340 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +     I +  +I  P   +KEL++N+LDA ++ V   I+       Q+ DNG
Sbjct: 1   MPITALPQDTARAIGSTSVISDPCSVVKELLDNALDASATSVFIEISQNTVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G+   +  +  +R  TSKI+  +D   I   + GFRGEAL S   VS  +T+ +R    
Sbjct: 61  CGIPPSDHALVCKRAHTSKIATVEDLKKIGGSSLGFRGEALASTAEVSGGVTVTTRVDTE 120

Query: 116 NTGAQIAI-SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN-LITDVIR 173
              + I       + SV+  +   GT V V DLF  IP R         +T   +  +I+
Sbjct: 121 PVASVIRYGRDGGVISVQRASHPVGTTVRVTDLFKHIPVRRQTTLKNTTKTLARVKRLIQ 180

Query: 174 RMAIAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN- 229
             A A P    +   +     N   M     N    +   ++ G D  +  V  +     
Sbjct: 181 EYAAAQPSKRLSLKVLKAKNENGNWMYAPKPNAGLLDAALKIAGTDVASTCVLKHWPIPE 240

Query: 230 -EITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIR--TAYAETIPLGRYPVV 284
                    G P         +             K   S +R  +A  E+      P +
Sbjct: 241 ATSDFTCVEGNPDCRMTALVLDPNAASRGIGKNIAKIYKSYVRSGSAARESTTTVTDPFL 300

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
            L +  +    DVN+ PAK  + F N   I   I +  + 
Sbjct: 301 CLHVYCNEATYDVNIEPAKDDVLFENTPSILEAIEELCRD 340


>gi|226324943|ref|ZP_03800461.1| hypothetical protein COPCOM_02735 [Coprococcus comes ATCC 27758]
 gi|225206291|gb|EEG88645.1| hypothetical protein COPCOM_02735 [Coprococcus comes ATCC 27758]
          Length = 335

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 3/320 (0%)

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR-NFIIQSIQKAINKKGISTS 334
                 P   L  +I   +          Y   +    +  + + ++ ++     G   S
Sbjct: 16  WSQSEMPSAELQTQISTEKTVSTGDEKLDYFMQKMRERVYASHLTEAKEEQEKNIGAKES 75

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
            + +     +    N    +      S   T+      E+ L   DL            +
Sbjct: 76  KMAALDENPAVDIQNKGTENRAYSDKSKEKTERDPEKTESNLFLKDLKAKKVKQLDLFEE 135

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
            + + EA          Q+ + Y + Q  D L I+DQHAAHER+++E+        + TS
Sbjct: 136 QILKKEARQEY--RIIGQVFETYWLIQYRDSLYIIDQHAAHERVLYERTLAGMKKREYTS 193

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q L  P I+ L   E  ++    +    +G + E FG +  A+R IP  L      +LL 
Sbjct: 194 QYLSPPIILSLSMQEIDVLETFKDRFTAIGFEIEPFGGDEYAVRAIPDNLFGIAKKELLL 253

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +++D + D  +T    + I+  +A+M+C  +++   K+   EM+ L+ E+    N   C 
Sbjct: 254 EMLDSLSDGLSTSLEPELIDEKIASMSCKAAVKGNMKLSYAEMDELINELLSLDNPYHCP 313

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT I +   ++EK F R
Sbjct: 314 HGRPTIIAMTKRELEKKFKR 333


>gi|309354946|emb|CAP39693.2| CBR-PMS-2 protein [Caenorhabditis briggsae AF16]
          Length = 838

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/407 (21%), Positives = 172/407 (42%), Gaps = 49/407 (12%)

Query: 2   KIRKLSEKIINQIA-AG------EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFF 54
           KI K+S+ +  ++  A       +++   S A+++LI+NS+DA S+ ++  +   G    
Sbjct: 5   KIEKISKDVAERLTTAQNLRKNLQVVVSLSSALRQLIDNSIDAGSTIIDIRVKNNGYDSI 64

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRP 112
           ++ DNG G+ ++      + H TSK++   DF  + T GFRGEAL ++  VS +++ +R 
Sbjct: 65  EVQDNGSGIETQNFDALCKPHSTSKLTQFSDFDKLVTLGFRGEALNALCTVSSVSIFTRA 124

Query: 113 PQNNTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITD 170
             +  G + I      I+  +P A   GT + V +LF T+P R     +S++ E   +  
Sbjct: 125 ADSEIGTRLIYDHSGNITERQPAARELGTTIIVNNLFETLPVRRKELERSQKREFVKLLA 184

Query: 171 VIRRMAIAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINN-------- 220
            ++  A+  P +    +          +          + ++ + G   I N        
Sbjct: 185 TVQSFALLCPHIKILCTNNIAGKKTNIICTPGGTSTIQDVVTNLFGMRRIGNSKNGSALV 244

Query: 221 -----------------AVELNEKSNEITLQGYTGIPTFNRGN--ANQFYVFINGRTVQD 261
                             +E  +  +   ++G+        G   +++ +V+IN R V+ 
Sbjct: 245 PILQDQPDGEIMAMHSLQMEETQFFDLFKIRGFVSSCEHGCGRGTSDRQFVYINNRPVEY 304

Query: 262 KFILSTIRTAY------AETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
             +   +           +     +YP++VL +++ P ++DVNV P K  +       + 
Sbjct: 305 MRVSLNVLEVCSVTNDVYKQFNKNQYPIIVLFIDVPPEKIDVNVTPDKKTVMLEKERHLL 364

Query: 316 NFIIQSIQKAINKKGISTS---SVLSKKMISSFHQDNAPKTHLPKYA 359
             I  S+ K   K   S S   S +  + I +  Q +A  T +  ++
Sbjct: 365 AVIRASMMKTYLKIVGSHSTIKSSVEDRRIMALAQQSAINTSVVYFS 411



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 8/251 (3%)

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
            +  + I+   +D    +        +T   +K    +     +  L   + TYS+   P
Sbjct: 583 DVYSRHINPEPEDPVENSDEKDALDEITTGFKKEETADAERQLSRSLTLVEKTYSDF--P 640

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
           +       +       Q +  +II +    L IVDQHA+ E+  FE+++   NS K+T Q
Sbjct: 641 IFNFRKDDFTKMQIIGQFNHGFIICRLRGHLFIVDQHASDEKYNFERLQ---NSAKLTKQ 697

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNAIA--IREIPAILSKKNIPQL 512
            L TP  +     +  +I E+       G   + R     +   +   P +LS++     
Sbjct: 698 PLFTPIALGFGSVQELIIRENLPIFQANGFDFDFREKDGCLKTFLTARPELLSQQLTNSD 757

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L +I+  + +         RI NI A+ AC  S+  G+ +   EM R++R + K      
Sbjct: 758 LEEILAVVSEYPNQMYRPVRIRNIFASKACRKSVMIGKPLNHREMTRIIRHLSKLDQPWN 817

Query: 573 CNHGRPTFIKL 583
           C HGRPT   L
Sbjct: 818 CPHGRPTIRHL 828


>gi|299738271|ref|XP_001838229.2| DNA mismatch repair protein [Coprinopsis cinerea okayama7#130]
 gi|298403231|gb|EAU83597.2| DNA mismatch repair protein [Coprinopsis cinerea okayama7#130]
          Length = 918

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 162/431 (37%), Gaps = 62/431 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR + +  +++I +G+++     A+KEL+ENS+DA ++ +E      G +  ++ DNG G
Sbjct: 7   IRPIDQASVHRITSGQVVIDLQTAVKELVENSIDAGATNIEVRFKQYGLTSVEVIDNGSG 66

Query: 63  MTSEEIPM---AVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQ-N 115
           +  ++         +H TSK+   +D + + TFGFRGEAL S+ A+   + + +      
Sbjct: 67  IDEKDFDSIVHVALKHHTSKLEVYEDLNTVQTFGFRGEALSSLCALCESINVTTSTEDTA 126

Query: 116 NTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G  + +    ++ + + VA   GT V V  LF  +P R     +  + E +    ++ 
Sbjct: 127 PKGTSLELDFSGQVKARQVVARKRGTTVTVSKLFTPLPVRRKEFERKAKREFDKALSLLY 186

Query: 174 RMA----IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
             A     A P V  + +    K  +          +    ++ + G   + N VEL+  
Sbjct: 187 AYALGPCAASPGVRMSVTNHTEKGQKSVQLQTQGTPSLRASVTALWGPKAMENLVELDVS 246

Query: 228 S----------------------NEITLQGYTGIP--TFNRGNANQFYVFINGRTVQDKF 263
                                   +I ++G T        R N ++ + +INGR      
Sbjct: 247 FSIETEKSVLKRLKAFKQSASDSIDIHVKGLTSKFAVGCGRLNTDRQFFYINGRPCNLPK 306

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDP-----------------RQVDVNVHPAKSYI 306
           +       Y       + P +V    I                      DVNV P K  I
Sbjct: 307 VQKAFNEVYRTF-NANQAPFLVADFIIPTGLLSSLVTPLPSNPSFADSCDVNVSPDKRTI 365

Query: 307 RFRNPTIIRNFIIQSIQKAINKKGI-----STSSVLSKKMISSFHQDNAPKTHLPKYATS 361
              N   +   + ++++   +          +   L++  ++S H         P  ++ 
Sbjct: 366 LVHNEDSLITALKEALEDHFSSSRATFDLGQSQGRLTQTTLASSHTQTVAPRPTPAPSSP 425

Query: 362 LTNTQEKLFLQ 372
             +T   L + 
Sbjct: 426 CPSTVAALDVP 436



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 400 EATHYQLGIACAQIHQNYIISQ----------TTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           E   +       Q +  +II Q            D L IVDQHAA E+  FE ++     
Sbjct: 776 EKGDFASMAVIGQFNLGFIIVQRKQPGSEDKPPMDDLFIVDQHAADEKYNFETLQLT--- 832

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           TKI +Q LL P  ++L  G+  L +E+ E L   G + E    N
Sbjct: 833 TKIQAQKLLRPRPLELTAGDELLAIENLEVLRNNGFEVEMIEEN 876


>gi|260836417|ref|XP_002613202.1| hypothetical protein BRAFLDRAFT_210470 [Branchiostoma floridae]
 gi|229298587|gb|EEN69211.1| hypothetical protein BRAFLDRAFT_210470 [Branchiostoma floridae]
          Length = 362

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 149/364 (40%), Gaps = 40/364 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   +  Q+ +G  +   +  ++EL+ NSLDA ++ V   I        Q+ DNG G
Sbjct: 2   IRTLDPSVRAQLRSGVSVPSVAQCVEELVLNSLDAAATCVAVRIDLENFW-IQVVDNGHG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           +  +++ +   R+ TSK     D  ++  FG+RGEAL SI  V + L + SR   +   +
Sbjct: 61  IPKDQLSIVGDRYATSKCHTVTDLESLSFFGYRGEALASIAQVCAVLEIESRHKASTKVS 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K+ S+     +    GT V V ++F  +P R  F+ S  +E   I + +  +A
Sbjct: 121 TKVFRHGKVVSIFESKAHRPTYGTTVTVHNVFHNLPVRQKFV-SVSLERERIRERVAAIA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VSFT    ++   K        +       + G     +  E + +  +  + GY
Sbjct: 180 LIHPSVSFTLR-NENVGGKYLQTHKTNSLVSCFGSLFGTKKSMSLREASHQHEQFKISGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---------------- 280
                    N +  +++IN R +    +   +    +++  + R                
Sbjct: 239 ISRE--GHRNKDLQFLYINNRLILRTKVHKFLNLLMSKSTVINRRAGQWEPRTPTVRDNS 296

Query: 281 -------------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
                        Y + VL +     + D+++ PAK+ + F+    +   +   +QK + 
Sbjct: 297 ATDASSPGKQRDYYGMFVLNISCPLSEYDISLDPAKTLVEFKEWEALLTCVQDMVQKFLK 356

Query: 328 KKGI 331
           K+ +
Sbjct: 357 KENL 360


>gi|156083705|ref|XP_001609336.1| DNA mismatch repair protein [Babesia bovis T2Bo]
 gi|154796587|gb|EDO05768.1| DNA mismatch repair protein, putative [Babesia bovis]
          Length = 883

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 156/380 (41%), Gaps = 9/380 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  LS        + ++I      ++EL+EN++DA ++ +   +   G +   ++DN 
Sbjct: 1   MSIVGLSADRSASHRSLQVISEVKCVVRELVENAIDAGATDIVIKLVDQGLTSISVSDNA 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+ +       +R  TSKI   +D   ++ + GFRGEAL SI  VS L + +R  +   
Sbjct: 61  SGIEAFNFEQLAKRSSTSKIKQFEDIFTSLSSHGFRGEALNSIANVSTLEVETRVAKEEV 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIRRM 175
           G  +    +  +    P+A   GT+V    LF   P R N  +K  + +      ++++ 
Sbjct: 121 GWYLKFDRDGSLIEKTPIAKKVGTVVTSSKLFEPYPVRRNLLIKGAKSQATGAVGIVQQY 180

Query: 176 AIAYPKVSFTFSTIKSNRYK----MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           A+ YP++ F  + + S  ++     +   T+ +  E   ++ G +FI N +++    +  
Sbjct: 181 ALIYPEIRFLLTNMSSTNHQISSLFSSTGTSKSIREVSGEIFGSNFIKNVLDIKLTRDTW 240

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           +++G    P   R N +   +FIN R V     L        +          VL + ID
Sbjct: 241 SVEGIISTPQTGRQNNDIQILFINRRPVDGMKKLKRCIKDVHKQFSSKYNVAYVLNINID 300

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
            + VDVN+ P K  +       I   + + I +    +    S       +       + 
Sbjct: 301 SKHVDVNLAPDKRRLFLMQEDTITRQLKEGILELYMMRMAKDSITNDPLRMKQLQFSRSS 360

Query: 352 KTHLPKYATSLTNTQEKLFL 371
               P   +S T + +    
Sbjct: 361 TASSPDMQSSRTESTDSFVF 380



 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 103/315 (32%), Gaps = 38/315 (12%)

Query: 301 PAKSYIRFR---NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           P K            + R+ +  + + A  +  +   S  ++  ++S         +L  
Sbjct: 557 PIKLDPHLSVVKQEVVARDSLTDAQEIASTQSNVDRPSPRTEDAVNSDTAQTNEVLNLKL 616

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
                 N ++    +    S+       D    +    +       +  G   A++   Y
Sbjct: 617 QRVYDDNFRKSEVYRMFGSSSEPGFHPIDTETIDPKIFLRMQVCGQFNNGFIIAKLESKY 676

Query: 418 -IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
              ++    + ++D HAA E+  FEK     +S KI  Q L+    +DL      ++  +
Sbjct: 677 SESNKVKYAVYLIDPHAADEKTKFEKY---NSSVKIQRQPLVCERKVDLSPFHQQVVQAN 733

Query: 477 DEDLHRLGI-------KAERFGPNA----IAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            + L+  G             G       I +   P +L +    +     + ++  S +
Sbjct: 734 LDLLYENGFAATVVRQVVNDEGGYNREPGIYLSSFPQVLGQILGEEDFVSFVHDLAQSGS 793

Query: 526 TY--------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
           +                         RI NILA  AC  +++ G  +   +M  +   + 
Sbjct: 794 SSQPDPTNTSASQVLWGANTILPRPKRIWNILANRACKDAVKLGDPLTMKQMIVIKDRLA 853

Query: 566 KNPNSSQCNHGRPTF 580
              +   C HGRPT 
Sbjct: 854 GLVHPWNCPHGRPTM 868


>gi|167527530|ref|XP_001748097.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773515|gb|EDQ87154.1| predicted protein [Monosiga brevicollis MX1]
          Length = 703

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/415 (21%), Positives = 159/415 (38%), Gaps = 33/415 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R LS     ++++ +++   S  +KELIENS+DA ++ ++  +A  G    ++TDNG GM
Sbjct: 26  RLLSAACQRRLSSEQVVPTASQVVKELIENSIDAGATNIDVRLANAGLDLIRVTDNGKGM 85

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQ 120
           +  ++ +  + HCTSK++  D+  ++ T GFRGEAL SI    + L + S    N    Q
Sbjct: 86  SEADLAVIAEPHCTSKLASIDELQHLATLGFRGEALSSIRECAAELVITSAQHANTPARQ 145

Query: 121 --IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRM 175
             +     +           GT + V  LF  +P R        + + E  L     R  
Sbjct: 146 LTLRSKEPRPRPTLTANAGVGTSIVVTRLFHALPVRRQAHQAASARKQEMALAQHYCRAY 205

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
            + +P +   FS    N      ++   +F   I    G   +++   L+  +     + 
Sbjct: 206 GLIHPGLHLQFSATGRNAVTWRKRAA-KDFLGAIGATFGAVHVHSLHALSGNTPAGHFEA 264

Query: 236 YTGI-----PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           Y           +R   ++ +VF+N R V  +  L  +   + +     R+  + L L +
Sbjct: 265 YVPRREAPIEAISRSQGDRAFVFVNDRYVDGRPFLYALNKHWWKGSGRRRWAHLYLQLRV 324

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI--QKAI-----------------NKKGI 331
               +D+NV   K          +      +     A+                     I
Sbjct: 325 AAPTLDINVAVDKLQYFMEQQDELLQAFETACAAYYALPLGTTLQAGRLVSSQPAADCRI 384

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
              S  +   + S  +D +P+      A +LT        Q   + T+ L P  D
Sbjct: 385 PDESAQANAHVHSESEDPSPEPSGTTSAETLTALPSASDEQPTTIPTSTLAPHGD 439


>gi|170111214|ref|XP_001886811.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164638169|gb|EDR02448.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 365

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 145/357 (40%), Gaps = 33/357 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +    I++I +G+++     A+KEL+ENS+DA ++ VE      G    ++ DNG 
Sbjct: 7   SIKAIDRTSIHRITSGQVVIDLQTAVKELVENSIDAGATSVEVRFKQYGLKSVEVIDNGS 66

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN-NT 117
           G+  E+      +H TSK+   +D S + TFGFRGEAL S+ A+   LT+ +   +    
Sbjct: 67  GIPEEDYDSVALKHHTSKLETFEDLSIVRTFGFRGEALSSLCALCEQLTVATATKETVPM 126

Query: 118 GAQIAI-SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
           G  + + S   + S   VA   GT V +  LF  +P R     ++ + E      ++   
Sbjct: 127 GVSLEMGSNGHVKSRSTVAKPKGTTVTINSLFSPLPVRRKEFERNSKREFGKALALLHAY 186

Query: 176 ----AIAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVE------ 223
                 A P V  T S      +K     TNG  +    ++ + G   ++N V+      
Sbjct: 187 ALGPCSAGPGVRLTVSNQLDKGFKSVQIRTNGTPSTRASVTALWGPKALDNIVDLNLAFS 246

Query: 224 ------------LNEKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIR 269
                          ++  + ++G         G    ++ ++++NGR      +     
Sbjct: 247 VDREKHTLRGQSQATETVFVEVKGLLSKFAVGCGRPGTDRQFLYVNGRPCNLSKVQKAFN 306

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
             Y       + P ++    +     D+N+ P K  I   N   + + +  S    +
Sbjct: 307 EVYRTF-NANQVPFILADFILPTESCDINLSPDKRTIFLHNEGNLISALKVSFGIVL 362


>gi|322787067|gb|EFZ13291.1| hypothetical protein SINV_14462 [Solenopsis invicta]
          Length = 757

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 147/330 (44%), Gaps = 36/330 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  + +  I   +II      +KEL+EN++DA++  +E  +   G+S  ++ DNG
Sbjct: 1   MPISALDVRTVKLITTTQIITSVYAVVKELVENAIDADADNIEINLIDNGRSLIEVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DD--------------------FSNIHTFGFRGEALP 98
            G++ E+ P       TSKI+  +D                       + TFGFRGEAL 
Sbjct: 61  CGISKEDTPYMGLPSYTSKITNFEDLDYCIVIATKSILTSLFLSFLDELQTFGFRGEALS 120

Query: 99  SIGAVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF 157
           ++ AV+ + ++++  ++N  A  A++    I +      + GT V+VR+LF  +P R   
Sbjct: 121 ALCAVAEVIIITKTKEDNVAALYAMNHNGHIVNCETCHRSTGTTVQVRNLFKQVPVRRQI 180

Query: 158 LKSEQVETNLIT---DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG 214
           + + +     I     +I+   I  P +   F    +  +    + +  N  E ++ V+G
Sbjct: 181 ITNTKKTNQTIKLLETLIQCFGICKPNIRIQFRVNNNVIFT---KPSLNNIREAVNHVLG 237

Query: 215 EDFINNAVELNEKSNEITLQGYTGI----PTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
              ++N   +  K+ E+TLQ            +  + +  ++F+N R ++ K +   + +
Sbjct: 238 RKIMSNMEWVESKNAELTLQLMLPSKKVQNLSDIFHPDLHFIFVNNRPIKHKDLEKIVNS 297

Query: 271 ---AYAETIPLGRYPVVVLLLEIDPRQVDV 297
               + E     +  V ++ + + P  +D 
Sbjct: 298 LILEHFEQESYRKKTVFLVYITLRPMDIDN 327


>gi|71746104|ref|XP_827624.1| mismatch repair protein PMS1 [Trypanosoma brucei TREU927]
 gi|13027781|gb|AAK08649.1| putative mismatch repair protein PMS1 [Trypanosoma brucei]
 gi|70831789|gb|EAN77294.1| mismatch repair protein PMS1, putative [Trypanosoma brucei]
          Length = 788

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 96/509 (18%), Positives = 176/509 (34%), Gaps = 33/509 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E    +++AG++I   S  +KEL+ENSLDA +  V   +   G     + D+G G
Sbjct: 2   ITLLDEGSSRKLSAGQVITNLSSVVKELVENSLDAGARTVAIRVEDSGAGNITVEDDGSG 61

Query: 63  MT-----------SEE--IPMAVQRHCT------SKISDDFSNIHTFGFRGEALPSIGAV 103
           M             E+  +P+   R  T      S +S       T GFRGEAL S+  +
Sbjct: 62  MDLSYLLDSEGRLKEDASLPLLASRATTKRRGGDSGLSS--QAAQTLGFRGEALHSLAHL 119

Query: 104 SHLTLMSRPPQN-NTGAQIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPAR-LNFL 158
           S L++ +       T   IA       +   V     + GT V V  LF  +P R  +F+
Sbjct: 120 SELSICTMSESTRPTALLIAYDSNSRRTTVKVTSERRDVGTTVVVSKLFAALPVRHKDFV 179

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGE 215
           +  + +    T ++++ A+++P V    +      S    +   +  G+    +++  G 
Sbjct: 180 RGRKKQLLAATLLMKQYALSHPHVRLLMTHRAGPDSAPVTLVSLTGTGDPQRALAEAYGG 239

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
             I N   +  +    T+ GY       R +++     ++GR V    +   +  AYAE+
Sbjct: 240 RVIANMERVEWELTFGTITGYVSKGNAGRLSSDMQVFALDGRLVDLPMMAKAVNDAYAES 299

Query: 276 IP---LGRYPVVVLLLEIDPR-QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           +P      +P   L +        DVN+ P K  +   +       +     +       
Sbjct: 300 LPNAAQRTFPAFFLHVSSGESLPYDVNLVPDKRKVLISDEERHAGEVRTCGLRTFQASTD 359

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                +  +       +           T L+ T    F+ + R ++      D+   ++
Sbjct: 360 GIDLPVRNEGGWRHVPERRNTQETMPTQTPLSATSIAQFIYQRRETSQGDNLIDNAAVAQ 419

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
               V  S+       I             +T      ++ A     + E       + K
Sbjct: 420 VQPSVCLSQLLSGSSPIGRTSSPDATASPTSTTNRAPSERSAGSVESVLEYPLTFEPTQK 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDL 480
                    E         +   E   +L
Sbjct: 480 RQRLESSAEEGNTGDTDGSSWGEEDPREL 508



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           ++  +   Q +  +I++   D + ++DQHAA E+  +E +   + +     Q L +P  +
Sbjct: 595 FKNMVVHGQFNHGFIVTSLDDNIFVIDQHAADEKGNYEHLMSHYVARP---QPLFSPVPV 651

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGP-NAIAIREIPAILSKKNIPQLLRDIIDEIID 522
            +      L ++H E+L + G   +R    N + +  +P I  +   PQ + ++I +++ 
Sbjct: 652 SMEPQAVDLAVDHAEELRQHGFIVQRSDDTNKLLVLSVPVIPYEVVDPQNVVELIRQLVH 711

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            +T       + + +AT AC  SI  G  +   +M  ++  M +      C HGRPT   
Sbjct: 712 YNTISKPMRCVWHSMATKACRSSIMVGTMLSEKKMRSVVDRMGELEQPWNCPHGRPTVRH 771

Query: 583 LKL 585
           +  
Sbjct: 772 VSK 774


>gi|292627044|ref|XP_696739.3| PREDICTED: DNA mismatch repair protein Mlh3 [Danio rerio]
          Length = 1164

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 176/418 (42%), Gaps = 34/418 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L   +  Q+ +G  I      ++ELI NS+DA ++ V   I        Q+ DNG G
Sbjct: 2   IKSLPINVQAQLRSGVAIFSLQQCVEELILNSIDAGATCVAVKIDIEACKL-QVIDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  E++     R+ TSK S  +D  N+H +GFRGEA+ SI +++  + + SR  Q+    
Sbjct: 61  MCLEDMEKVGLRYNTSKCSSLEDLDNLHFYGFRGEAISSIVSLAEMVEISSRTKQSVKTY 120

Query: 120 QIAISGE---KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             + +     ++   + V  + GT V V +LF  +P R   +    +ET  I   +  ++
Sbjct: 121 VKSFNETNALEVFEAQTVRPSAGTTVSVYNLFHNMPVRRKRMDPV-LETERIRQRVEAIS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VSFT     S    +    T+  +   + Q+ G +      E+N +  +  + G+
Sbjct: 180 LMHPSVSFTVKKENSAHMMVQLSKTSSTYYRFV-QIHGLNRAQKLGEVNYEHEQFQITGH 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---------------- 280
            G       N +  ++F+N R +    I  T+           R                
Sbjct: 239 IGRE--GHYNNSLQFLFVNERLLLKTRIHKTLNCLLKRVSGAARQNNSPTSYPVTSSPKQ 296

Query: 281 ------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
                 + + V+ ++    + D+ + PAKS I F++   +   I + ++  + K+ + + 
Sbjct: 297 KGGYDLHGIYVINIKCHYSEYDICLEPAKSLIEFKDWDNVLICIEEGVKAFLTKENLVSE 356

Query: 335 -SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
            + +S   +      NA  +   K ++  TN   +  +++N  S  D+         E
Sbjct: 357 LNTISNDGLPCSPVRNAESSEKQKRSSEETNEACETMIEKNDSSVVDVADGVQMLEQE 414



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 109/293 (37%), Gaps = 23/293 (7%)

Query: 319  IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                ++A N    S     +   +S+   +      +     ++  T  +      ++  
Sbjct: 840  KPRAERAFNSGTDSREDAQAPDSLSTLFSEWHNPVFIRPPEVAVDVTSGQAEGLAVKIHN 899

Query: 379  NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
                             + + +       I  A  + +   +   + LV+VDQHAAHER+
Sbjct: 900  ILFPYRFTKNMIHTMRVINQVDKKFLACLINTAGQNTSESSTDEGNLLVLVDQHAAHERV 959

Query: 439  IFEKMRQDFNS--------TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
              E +  D            ++ S  +  P  I++ E E  L+      L  L +   RF
Sbjct: 960  RLEGLIADSYEDDPDTPGKKRLCSSRVTPPLEINVTEEELRLLRSCQGFLRGLALDV-RF 1018

Query: 491  GPN---AIAIREIPAILSKKNIPQL--------LRDIIDEIIDSSTTY-TLQDRIENILA 538
              +   ++ +  +PA   +K   +L        LR+ I+ +  +      L   + N+LA
Sbjct: 1019 PKSESLSVFLESLPACFIEKESTELRRGRRSDYLREHIELLRSTGRVRGILPLTVHNVLA 1078

Query: 539  TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            + AC+G+I+    +   E   L+  +       QC HGRP+ + L  +D+  L
Sbjct: 1079 SQACHGAIKFNDVLNKEECCSLVSSLSSCRLPFQCAHGRPSIVPL--ADLHHL 1129


>gi|237839411|ref|XP_002369003.1| DNA mismatch repair protein, putative [Toxoplasma gondii ME49]
 gi|211966667|gb|EEB01863.1| DNA mismatch repair protein, putative [Toxoplasma gondii ME49]
          Length = 1687

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/353 (21%), Positives = 141/353 (39%), Gaps = 31/353 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  +S  +   + + +++       KEL+EN++DA ++ VE     GG +  ++ DNG 
Sbjct: 213 RLHAMSSLVAEAVCSQQVVLGLKSICKELVENAIDAGATTVEVRFVDGGMASVEVRDNGS 272

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G+  ++ PM  +RH TSKI+   D  + + T GFRGEAL S+ A+S + +++R       
Sbjct: 273 GIAPQDFPMLGRRHATSKINKFTDLYSALDTMGFRGEALASLCALSDVEILTRTASEPFA 332

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIP-ARLNFLKSEQVETNLITDVIRRMA 176
            ++      KI    P A   GT V V +LF ++P  R    +  Q         +++ A
Sbjct: 333 TRLRFDHHGKIIHQEPAAREVGTSVTVSNLFASLPLRRRALRQQRQKHLQESLAFLQKFA 392

Query: 177 IAYPK------VSFT---------------FSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
           + +          FT                    S+   +N + T     +    V GE
Sbjct: 393 LLHADDCRILVTDFTPANSSRSAEASSGSQRRNGGSSVTLLNTRGTATRLLDAAVTVYGE 452

Query: 216 DFINNA----VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF-ILSTIRT 270
             +       +   E   E +++     P      +     F+N R V+    +   I  
Sbjct: 453 RQMQQCTQVSLAGAEPGREWSVEALLSRPPLGVRTSALQLFFVNKRVVEFPPLLQKLINK 512

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
            Y E      +P+V+    + P  ++VN+   K  +       I   ++   +
Sbjct: 513 KYREVCSRHCFPIVIAFATVAPHLLEVNLRKDKQEVLLAVEKEITEALLVGGR 565



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 528  TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                ++  ILA+ AC  +I  G  +   +M  +L+ +        C HGRPT   L
Sbjct: 1393 CRPKKVWEILASRACRSAIMIGDSLTVNQMQTVLKNLATLHLPFNCPHGRPTVRHL 1448


>gi|254580625|ref|XP_002496298.1| ZYRO0C15180p [Zygosaccharomyces rouxii]
 gi|238939189|emb|CAR27365.1| ZYRO0C15180p [Zygosaccharomyces rouxii]
          Length = 913

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 175/427 (40%), Gaps = 38/427 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI  +    I++I +G+++   + A+KELI+NS+DA +  +E V+   G    + +D+G 
Sbjct: 3   KINAIGGYDIHRITSGQVVIDLTTALKELIDNSIDANAHHIEVVLKNYGIESIECSDDGD 62

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E       +H TSKIS   D + + T GFRGEAL S+ AV+ + + +         
Sbjct: 63  GIEKENHEFLALKHHTSKISTFQDMAAVSTLGFRGEALASLCAVAKVVVTTTTRPPRADK 122

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAIA 178
                  K+ +    + N GT +++ +LF  +P R     K+ + +      +++  ++ 
Sbjct: 123 LEYSYDGKLINKSTTSRNRGTTIQLSELFNNLPVRKKEFSKNCKKQFAKCLTMLQSYSVI 182

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGED----------------FINN 220
              + F+   + SN  K    ST  N    +RI  + G                  F   
Sbjct: 183 QDDIKFSVWHVTSNGRKTLALSTTRNQGISKRILSIFGSSSIRGLSEVDLTLDLNPFKGQ 242

Query: 221 AVELNEK-------SNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKFILSTIRTA 271
            +    +         +I +QG     +F       ++  V+IN R V    I+      
Sbjct: 243 MLRKYAEDPDFESLDYQIRVQGLISRNSFGCGRTAKDRQLVYINRRPVDYPVIIQCCNEV 302

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA------ 325
           Y     + +YP   L  E+ P+ +D+NV P K  +   N   + + + +++ K       
Sbjct: 303 YKSFNNV-QYPAFFLNFELSPQLIDINVTPDKRTVLLHNEKYVIDVLRETLTKYFDDQDL 361

Query: 326 -INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
            + K   S   V++ K  ++   ++       + A  L     KL  +E   + N L P 
Sbjct: 362 LLPKASFSQPEVINPKKRTAEQTEDDEGQREEEVAEELPERASKLARREPLKAFNGLSPE 421

Query: 385 DDPTYSE 391
              + S 
Sbjct: 422 GSTSISP 428



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 14/192 (7%)

Query: 403 HYQLGIACAQIHQNYIISQT----TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
            +       Q +  +II          L IVDQHA+ E+  FE +++        SQ L+
Sbjct: 710 DFDHMQIVGQFNLGFIICTRRIGSNYDLFIVDQHASDEKFNFENLQKTTI---FKSQKLI 766

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKNIPQLLR 514
            P  +DL   +   +M++ +     G K     +      + +  +P   +         
Sbjct: 767 APLDVDLSAIDELAVMDNLKVFENNGFKLCIQDDEIEGTKVQLTSLPVSKNTIFGIDDFY 826

Query: 515 DIIDEIIDS---STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           +++  + ++   +       +I ++LA  AC  SI  G+ +    M +++R +       
Sbjct: 827 ELVHLLKENQGINRDSIKCSKIRSMLAMRACRSSIMIGKPLTQKTMCKVVRHLSGLDKPW 886

Query: 572 QCNHGRPTFIKL 583
            C HGRPT   L
Sbjct: 887 NCPHGRPTMRHL 898


>gi|296088648|emb|CBI37639.3| unnamed protein product [Vitis vinifera]
          Length = 1230

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/350 (23%), Positives = 158/350 (45%), Gaps = 11/350 (3%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I+ L E + + + +G I+   +  ++ELI NSLDA +++V   ++ G   + ++ D+
Sbjct: 1   MRSIKPLPEAVHSSVRSGIILFDLTRVVEELIYNSLDAGATKVSVSVSVGTC-YIKVVDD 59

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFS---NIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+T + + +  +R+ TSK+           +FGFRGEAL SI  VS L ++++     
Sbjct: 60  GTGVTRDGLVLLGERYATSKLHHLTEMDAATGSFGFRGEALGSISDVSLLEIVTKTQGRP 119

Query: 117 TGAQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL-ITDVIR 173
            G +  + G K     +     + GT V VRDLF+  P R  +L+S   +    +   + 
Sbjct: 120 NGYRKVMKGCKCLYLGIDDDRQDVGTTVVVRDLFYNQPVRRKYLQSSPKKVLHSVKKCVF 179

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
           R+A+ +  VSF    I+S+  ++    ++ +    +   +G +  ++  ELN     + L
Sbjct: 180 RIALVHSNVSFKVVDIESDD-ELLCTKSSSSPLSLLISGLGIEDSSSLHELNITDGILKL 238

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
            GY   P          YV I           ++  +   +      YP  +L L     
Sbjct: 239 SGYVSGPCNTFSIKAFQYVCI--HVYSFDPWKASSGSQDKKRSRCQGYPTYILNLRCPQS 296

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
             D+   P+++ + F++   I  F+ +++ +  ++      S +     S
Sbjct: 297 HYDLTFEPSRTAVEFKDWVPILAFLEKAVTRFWSEHIAHGESSVHANKTS 346



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 410  CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI-IDLLEG 468
              Q+ + +I       L I+DQHAA ER+  E++RQ   S ++ + T L  E  + L E 
Sbjct: 994  LQQVDKKFIPVVADGTLAIIDQHAADERIRLEELRQKVLSGEVKTITYLDAEQELVLPEI 1053

Query: 469  ECALIMEHDEDLHRLGIKAERFGPNA----------------IAIREIPAILSKKNIPQL 512
               L+  + E +   G        N+                I +  +P IL        
Sbjct: 1054 GYQLLHTYAEQIQNWGWICNIHAQNSRSFTKNLDLLHKKPTVITLLAVPCILGVNLSDVD 1113

Query: 513  LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
            L + + ++ D+  + T+   +  +L   AC G+I  G  +   E + ++ E+++     Q
Sbjct: 1114 LLEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDALLPSECSLIVEELKRTSLCFQ 1173

Query: 573  CNHGRPTFIKL 583
            C HGRPT + L
Sbjct: 1174 CAHGRPTTVPL 1184


>gi|296448867|ref|ZP_06890698.1| MutL dimerization protein [Methylosinus trichosporium OB3b]
 gi|296253626|gb|EFH00822.1| MutL dimerization protein [Methylosinus trichosporium OB3b]
          Length = 238

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 128/188 (68%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A AQIH+ YI++QT DGLVIVDQHAAHERL++E+++ +  +  +  Q LL P +++L 
Sbjct: 50  GAARAQIHETYIVAQTRDGLVIVDQHAAHERLVYERLKAERAAQGVARQLLLVPRVVELD 109

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
                 ++    +L  LG+  E FGP A+  RE+PA L    + +L+ D+ D I ++   
Sbjct: 110 GARLDALLASLSELAELGLVLEPFGPGAVLAREVPAALGDAEVERLIEDVADLICEAGDA 169

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             L  R++ +LA  AC+ S+R+GR++ + EMN LLREME+ P + QCNHGRPT+++LKL+
Sbjct: 170 RGLTQRLDAVLARAACHHSVRAGRRLGAQEMNALLREMERTPGAGQCNHGRPTYVELKLA 229

Query: 587 DIEKLFGR 594
           DIEKLFGR
Sbjct: 230 DIEKLFGR 237


>gi|238496769|ref|XP_002379620.1| DNA mismatch repair protein pms1, putative [Aspergillus flavus
           NRRL3357]
 gi|220694500|gb|EED50844.1| DNA mismatch repair protein pms1, putative [Aspergillus flavus
           NRRL3357]
          Length = 324

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 7/220 (3%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++QI +G++I       KEL+ENSLDA ++ +E      G    ++ DNG G++ E    
Sbjct: 74  VHQIQSGQVIVDLCSVAKELVENSLDAGATSIEVRFKNNGLDLIEVQDNGSGISPENYEN 133

Query: 71  AVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NTGAQIAISGE- 126
              +H TSK+S  +D S + TFGFRGEAL S+ A+S   +++          ++      
Sbjct: 134 VALKHYTSKLSSYEDLSRLQTFGFRGEALSSLCALSEFHVVTAQANQAPKANRLDFEHSG 193

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFT 185
           K+   + VA   GT V V  LF  +P R     K+ + E   + +++   A     V F 
Sbjct: 194 KLKKTQIVAGQKGTTVSVEGLFKRLPVRRRELEKNIKREYGKVLNLLHAYACVSKGVRFN 253

Query: 186 FSTIKSNRYKMNFQSTNGNF--PERISQVIGEDFINNAVE 223
                +    +   STNGN    E I+ V G   +   + 
Sbjct: 254 VKNTVAKTRNVVVFSTNGNQTTKENIANVYGAKTLLALIP 293


>gi|213019776|ref|ZP_03335579.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994606|gb|EEB55251.1| DNA mismatch repair protein MutL [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 418

 Score =  203 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 125/412 (30%), Positives = 213/412 (51%), Gaps = 28/412 (6%)

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +  +A+    + FT ++      K   Q++  N    I     ++F +N++E+ E+   I
Sbjct: 1   MNNLAMINYSIGFTLTSGNKKLLKYVKQTSLFNRLCEIE----KEFQSNSLEVKEEEEGI 56

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
            L+G+   P  NRGN+ Q Y F+NGR ++D  ++  IR AY + IP  RYP  VL LE+ 
Sbjct: 57  KLKGHICKPNVNRGNSTQIYTFVNGRPMKDNLLVGAIRYAYHDFIPNNRYPFAVLHLEVP 116

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI-----SSFH 346
             QVDVNVHP KS +RF+N  +I   + + I K ++ +  +    + +++I     S   
Sbjct: 117 YDQVDVNVHPNKSEVRFQNKRLIYEIVRRGIIKTLSTRFAAGDQGIEEELIFNDSKSQEQ 176

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQ------ENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            D+  K    ++     +  E   ++      E R S  +     +    +    +E  +
Sbjct: 177 IDSQEKKDQKEFYEKRPSLLENRLMKEFNAPDERRQSLPETFKYGESPPQKGTMVLERKQ 236

Query: 401 AT---HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
                 + LG A  Q++  YII++    L+IVDQHAAHERLI+E +      T I  Q  
Sbjct: 237 IDLIADHPLGYARCQVYNTYIIAEAKGKLIIVDQHAAHERLIYECL------TSIKRQKF 290

Query: 458 LTPEIIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           L PE +++  +    ++  + + L  +G   E    + + ++EIPAIL   +I ++L DI
Sbjct: 291 LLPETVEIKNQAGMEMVGMYKDRLFEMGFGIEIESEDKVRVKEIPAILGTIDIKEMLVDI 350

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
           +D++ +   T  ++D++  I AT+AC+G+   GRKM+  EMN +LR++EK P
Sbjct: 351 VDKLTEMEDTLPIEDKVNKISATIACHGA---GRKMKLEEMNEILRQIEKTP 399


>gi|238499713|ref|XP_002381091.1| DNA mismatch repair protein Mlh1, putative [Aspergillus flavus
           NRRL3357]
 gi|220692844|gb|EED49190.1| DNA mismatch repair protein Mlh1, putative [Aspergillus flavus
           NRRL3357]
          Length = 548

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 10/176 (5%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DD 83
           A+KELIEN++DA S+ +E ++  GG    QITDNG G+  +++P+  +R  TSK+   +D
Sbjct: 3   ALKELIENAVDAGSTSLEILVKDGGLKLLQITDNGHGIDRDDLPILCERFTTSKLKQFED 62

Query: 84  FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP--------VA 135
            S+I T+GFRGEAL SI  ++HLT+ ++   ++   +   S  K+ + +P         A
Sbjct: 63  LSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAWRAHYSNGKLVAPKPGQPAAPKATA 122

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
              GT + V DLF+ +P R    +S   E   I DV+ R A+    V+F+      
Sbjct: 123 GRGGTQITVEDLFYNVPTRRRAFRSASEEYAKILDVVGRYAVHCSGVAFSCRKHGD 178


>gi|296532255|ref|ZP_06894999.1| DNA mismatch repair protein MutL [Roseomonas cervicalis ATCC 49957]
 gi|296267425|gb|EFH13306.1| DNA mismatch repair protein MutL [Roseomonas cervicalis ATCC 49957]
          Length = 215

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 75/189 (39%), Positives = 124/189 (65%), Gaps = 1/189 (0%)

Query: 407 GIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
           G   AQ+ + YI+++  DG LV+VDQHAAHERL  E+++      ++ +Q LL P +++L
Sbjct: 26  GRPVAQLLETYILAEAPDGALVLVDQHAAHERLTHEQLKAQLLDGEVRAQPLLIPAVVEL 85

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
              + A ++E    L RLG++ E FG   + +R +PA+L   +   LLRD+  E+ +   
Sbjct: 86  PPADAARLLEAAPTLARLGLEIEDFGAATLLVRSLPALLGNPDPAPLLRDLCAELAEWEE 145

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           +  L+ R++  +A +AC+GSIR+GR++   EM+ LLR+ME  P +S C+HGRPT++++  
Sbjct: 146 STALERRLDAAIARLACHGSIRAGRRLNPAEMSALLRQMEATPRASTCSHGRPTWLRMGK 205

Query: 586 SDIEKLFGR 594
           +++EKLFGR
Sbjct: 206 AELEKLFGR 214


>gi|322815592|gb|EFZ24225.1| mismatch repair protein PMS1, putative [Trypanosoma cruzi]
          Length = 774

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 154/399 (38%), Gaps = 32/399 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L      +++AG++I   S  +KEL+ENSLDA +  V   I   G     + D+G G
Sbjct: 2   IRRLDAASARKLSAGQVITDLSSVLKELVENSLDAGAHTVTVRIENYGLDKIVVNDDGSG 61

Query: 63  MT-----------SEE--IPMAVQRHCTSK--ISDDFSNIH----TFGFRGEALPSIGAV 103
           +             E+  +P+   R  T+K  + +  +++     + GFRGEAL  +  +
Sbjct: 62  LALGDLLTCEGTVREDASLPLLACR-ATTKNLLEEADASVAQFRDSLGFRGEALHCLANL 120

Query: 104 SHLTLMSRPPQNNTGAQIAISGEKISSVRPV----AMNPGTIVEVRDLFFTIPAR-LNFL 158
           S +++ +   ++           K             +PGT + V  LF  +P R   F 
Sbjct: 121 SEVSIQTMSAESQPATLCITYDVKTHRTSVSVTQERRHPGTTIVVEGLFRALPVRHREFN 180

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY---KMNFQSTNGNFPERISQVIGE 215
           K+ + +    T ++++ A+++P V    +   S +     +   +   +    +++  G 
Sbjct: 181 KNRKKQLLAATLLMKQYALSHPHVRLLMTHCLSPQSAPATLVSLTGTNDIHRALAEAYGG 240

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
            ++     +  + +  T+ G+    T  R +A+   + ++GR V    I   +  AYAE 
Sbjct: 241 RYLAEMNRVEWEFSFGTITGFVSKVTSGRLSADMQVLALDGRLVDLPIISKAVTDAYAEC 300

Query: 276 IP---LGRYPVVVLLLEIDPR-QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
            P      YPV  L L        DVN+ P K  + F   +     +             
Sbjct: 301 QPNAAQRAYPVFFLHLSCGNHVPYDVNLEPNKRKVLFTEESKYAEEVHSRALMEFQASTD 360

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
                    +  +   D      L    T ++ T    F
Sbjct: 361 GIDVDRHIHIERTRRADWKATQDLKLTRTPVSATSFTQF 399



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 4/196 (2%)

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
           T   +N      + + ++  I   Q +  +I++   D + ++DQHAA E+  +E +   +
Sbjct: 565 TEQTENQLATYLDKSSFKEMIIHGQFNHGFILASLGDDMFVIDQHAADEKFNYECLLSQY 624

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER-FGPNAIAIREIPAILSK 506
           ++     Q LL    + +   +  L + H E+L + G   ER    N + +  +P +  +
Sbjct: 625 SARP---QPLLAAVSVSMDPHDVDLAVLHSEELRQHGFIVERGEDANKLLVYSVPVLQYE 681

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
              P  + +++ +I            + + +AT AC  SI  G  +    M  ++  + +
Sbjct: 682 AVGPHDIVELVQQIALYGNITKPLRSLWHSMATKACRSSIMIGTALSEKTMRSVVSRLGE 741

Query: 567 NPNSSQCNHGRPTFIK 582
                 C HGRPT   
Sbjct: 742 LEQPWNCPHGRPTLRH 757


>gi|225561837|gb|EEH10117.1| DNA binding protein [Ajellomyces capsulatus G186AR]
          Length = 764

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 16/349 (4%)

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   +
Sbjct: 33  IQCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAWR 92

Query: 121 IAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
              S  K+           +P A   GT + V DLF+ +P R    +S   E   I DV+
Sbjct: 93  AHYSDGKLVPAKPGQTAEPKPTAGRGGTQITVEDLFYNVPTRRRAFRSSSEEYAKILDVV 152

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE-- 230
            R A+    V+F+      +   ++  + +    +RI Q+ G    +  ++ +       
Sbjct: 153 GRYAVHCSGVAFSCKKHGDSGVSISTSTNSTTV-DRIRQIHGSAVASELIDFSVDDPRLG 211

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
               G+     ++        +FIN R+V+   +   I  AY+  +P G +P   L LEI
Sbjct: 212 FRASGWASNANYH-AKRTTILLFINHRSVESSAVRRAIEQAYSNFLPKGGHPFAYLDLEI 270

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           +P++VDVNVHP K  + F N   I   I  +IQ+ +      +S     + +    +  +
Sbjct: 271 EPQRVDVNVHPTKREVNFLNEDEIIGSICTTIQQKLATVD--SSRTFMVQTLLPVGRTQS 328

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEES 399
              +                L   +    + L   D +  +    +  +
Sbjct: 329 ASVNSNAEPPFDDRQPTPRTLSGTKRPYENNLVRTDASMRKITSMLPPA 377


>gi|261331832|emb|CBH14826.1| mismatch repair protein PMS1, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 788

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 96/509 (18%), Positives = 177/509 (34%), Gaps = 33/509 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E    +++AG++I   S  +KEL+ENSLDA +  V   +   G     + D+G G
Sbjct: 2   ITLLDEGSSRKLSAGQVITNLSSVVKELVENSLDAGARTVAIRVEDSGAGNITVEDDGSG 61

Query: 63  MT-----------SEE--IPMAVQRHCT------SKISDDFSNIHTFGFRGEALPSIGAV 103
           M             E+  +P+   R  T      S +S       T GFRGEAL S+  +
Sbjct: 62  MDLSYLLDSEGRLKEDASLPLLASRATTKRRGGDSGLSS--QAAQTLGFRGEALHSLAHL 119

Query: 104 SHLTLMSRPPQN-NTGAQIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPAR-LNFL 158
           S L++ +       T   IA       +   V     + GT V V  LF  +P R  +F+
Sbjct: 120 SELSICTMSESTRPTALLIAYDSNSRRTTVKVTSERRDVGTTVVVSKLFAALPVRHKDFV 179

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGE 215
           +  + +    T ++++ A+++P V    +      S    +   +  G+    +++  G 
Sbjct: 180 RGRKKQLLAATLLMKQYALSHPHVRLLMTHRAGPDSAPVTLVSLTGTGDPQRALAEAYGG 239

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
             I N   +  +    T+ GY       R +++     ++GR V    +   +  AYAE+
Sbjct: 240 RVIANMERVEWELTFGTITGYVSKGNAGRLSSDMQVFALDGRLVDLPMMAKAVNDAYAES 299

Query: 276 IP---LGRYPVVVLLLEIDPR-QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           +P      +P   L +        DVN+ P K  +   +       +     +       
Sbjct: 300 LPNAAQRTFPAFFLHVSSGESLPYDVNLVPDKRKVLISDEERHAGEVRTWGLRTFQASTD 359

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
                +  +       +           T L+ T    F+ + R ++      D+   ++
Sbjct: 360 GIDLPVRNEGGWRHVPERRNTQETMPTQTPLSATSIAQFIYQRRETSQGDNLIDNAAVAQ 419

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
               V  S+       I             +T      ++ A     + E       + K
Sbjct: 420 VQPSVCLSQLLSGSSPIGRTSSPDATASPTSTANRAPSERSAGSVESVLEYPLTFEPTQK 479

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDL 480
                    E       + +   E   +L
Sbjct: 480 RQRLESSAEEGNTGDTDDSSWGEEDPREL 508



 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
           ++  +   Q +  +I++   D + ++DQHAA E+  +E +   + +     Q L +P  +
Sbjct: 595 FKNMVVHGQFNHGFIVTSLDDNIFVIDQHAADEKGNYEHLMSHYVARP---QPLFSPVPV 651

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGP-NAIAIREIPAILSKKNIPQLLRDIIDEIID 522
            +      L ++H E+L + G   +R    N + +  +P I  +   PQ + ++I +++ 
Sbjct: 652 SMEPQAVDLAVDHAEELRQHGFIVQRSDDTNKLLVLSVPVIPYEVVDPQNVVELIRQLVH 711

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            +T       + + +AT AC  SI  G  +   +M  ++  M +      C HGRPT   
Sbjct: 712 YNTISKPMRCVWHSMATKACRSSIMVGTMLSEKKMRSVVDRMGELEQPWNCPHGRPTVRH 771

Query: 583 LKL 585
           +  
Sbjct: 772 VSK 774


>gi|242820199|ref|XP_002487466.1| DNA mismatch repair protein, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218713931|gb|EED13355.1| DNA mismatch repair protein, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 870

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 156/447 (34%), Gaps = 28/447 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L       I +  ++  P   +KELI+N LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPIAALPPSTAQAIGSTSVLPNPCAVVKELIDNGLDAGATSISVEISPNSVDIIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIG-AVSHLTLMSRPPQN 115
            G+ SE+     +R  TSKI   DD  NI   + GFRG AL S    V  LT+ +R   +
Sbjct: 61  HGVASEDFENLCKRAYTSKIRTLDDLRNIGGQSLGFRGFALASATDMVDSLTVTTRTKND 120

Query: 116 NTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIR 173
              + +    + ++ S    +   GT V +      IP R    +KS     + I  +++
Sbjct: 121 VVASVLEYDAQGRLVSTEKASHTVGTSVCLNGFLKKIPVRRQAAVKSASKTISKIKKLLQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYK---MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
             A+A   +  +   +     K       S+  +  +   +V+G +            N 
Sbjct: 181 AYAMARLGIRLSLKVLNGRNEKDNWTYAPSSTASIVDASRKVVGVETAGQCESKAWPENV 240

Query: 231 ITLQGYT--------GIPTFNRGNANQFYVFINGRT-VQDKFILSTIRTAYAETI----- 276
                              F++ N +  Y+ ++GR    D+     I   Y   +     
Sbjct: 241 EDSIPSVNLLAYLPKADSDFSKVNNSSQYISVDGRPLSSDRGTAKEIIELYKSYVRSAAK 300

Query: 277 PLGRY----PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
             G      P + L +   P   D NV PAK  + F     +   +    +    +   +
Sbjct: 301 ATGNSTLGDPFLSLHISCPPGAYDANVEPAKDDVLFAEREELFQTVEDMFKATYGEPQTA 360

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
             S   +    +       +  + K  +  T  Q     +E+R   +        +  + 
Sbjct: 361 ADSTKKQPSSVNGFSVLLRQPAIQKPVSPPTTNQLPTLTRESRNVEDLAATLAAHSTDDS 420

Query: 393 NDPVEESEATHYQLGIACAQIHQNYII 419
               E+ E      GI    I + +  
Sbjct: 421 LSEAEQPEVASKDNGINPWSIAKTHFF 447


>gi|241767667|ref|ZP_04765304.1| MutL dimerisation [Acidovorax delafieldii 2AN]
 gi|241361392|gb|EER57894.1| MutL dimerisation [Acidovorax delafieldii 2AN]
          Length = 204

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/199 (37%), Positives = 116/199 (58%), Gaps = 1/199 (0%)

Query: 397 EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-KITSQ 455
           +     ++ LG A AQ+H  YI+++   GLV+VD HAAHER+++E+++   ++  +I SQ
Sbjct: 4   QAPREANWPLGRALAQLHGVYILAENAQGLVLVDMHAAHERIVYERLKAQVDAGARIASQ 63

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P        E A      E L  LG++   F P  +A+R +P  L++ +  +L R 
Sbjct: 64  PLLIPATFAATPEEVATAEASTEVLDLLGMEVVPFSPKTLAVRAVPTTLAQGDPVELARS 123

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           ++ E+     T  +Q     IL TMAC+G++R+ RK+   EMN LLR+ME    S QCNH
Sbjct: 124 VLAELAAHDATTVVQRARNEILGTMACHGAVRANRKLTPDEMNALLRQMETTDRSDQCNH 183

Query: 576 GRPTFIKLKLSDIEKLFGR 594
           GRPT+ +L + D++ LF R
Sbjct: 184 GRPTWRQLSMRDLDALFLR 202


>gi|282889890|ref|ZP_06298428.1| hypothetical protein pah_c005o024 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500213|gb|EFB42494.1| hypothetical protein pah_c005o024 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 133

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/119 (44%), Positives = 80/119 (67%), Gaps = 2/119 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KIR L E  IN+IAAGE+IE P+  +KE++EN++DA S+ +   I  GG+   +I+DNG 
Sbjct: 4   KIRILDEHTINKIAAGEVIENPASVVKEIVENAIDAGSTEICVEIQEGGRQLIRISDNGC 63

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           GMT ++  ++++RH TSK+   +D   + T GFRGEA+PSI A+S   L++ P    +G
Sbjct: 64  GMTQDDALLSLERHATSKLREVEDMEALATMGFRGEAIPSIAAISKFMLLTCPATPESG 122


>gi|58736987|dbj|BAD89402.1| PMS1 nirs variant 5 [Homo sapiens]
          Length = 196

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 6/195 (3%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIKSN 192
             P +   F   KS 
Sbjct: 182 LKPDLRIVFVHNKSF 196


>gi|307208956|gb|EFN86167.1| PMS1 protein-like protein 1 [Harpegnathos saltator]
          Length = 239

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 9/239 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L+ K +  I   ++I     A+KELIEN+LDA +  +E  +   G S  ++ DNG
Sbjct: 1   MPILALNVKTVKLITTTQVITSVYSAVKELIENALDANADNIEINLIDNGTSLIEVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++ ++         TSKIS  +D   ++TFGFRGEAL ++ AV+ +T++++  ++  G
Sbjct: 61  CGISKDDALFMGLSSYTSKISNFEDLDVLYTFGFRGEALNALCAVAEVTIITKTMEDIAG 120

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT---DVIRR 174
               +  + +I    P   + GT V+ ++LF  +P R   + + +     I     +I+ 
Sbjct: 121 TSYTMDHDGQIIKYEPCHRSTGTTVQAKNLFKQLPVRRQMIINTRRANQNIKLLETLIQS 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
            +I  P +   F    +  +    + +  N  E    V+G    +N   +  K+  + +
Sbjct: 181 FSICKPNIRIQFRIDNNVIF---AKPSLNNIKEAACHVLGRKITSNMEWIEPKNIGVCI 236


>gi|212538865|ref|XP_002149588.1| DNA mismatch repair protein, putative [Penicillium marneffei ATCC
           18224]
 gi|210069330|gb|EEA23421.1| DNA mismatch repair protein, putative [Penicillium marneffei ATCC
           18224]
          Length = 874

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 158/432 (36%), Gaps = 30/432 (6%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L       I +  I+  P   +KELI+N LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPIAALPPSTAQAIGSPSILPDPCAVVKELIDNGLDAGATSISVEISPNTLDIIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+  E+     +R  TSKI   DD  N+   + GFRG AL S   +++ L + +R   +
Sbjct: 61  HGIAPEDFENLCKRAYTSKIQTLDDLRNVGGQSLGFRGVALASAADMANTLIVTTRTKND 120

Query: 116 NTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
              + +    E ++ S    +   GT V +      IP R    +KS     + I  ++ 
Sbjct: 121 IVASVLKYDAEGRLVSTEKASHTVGTSVCLTGFLKKIPVRRQTAVKSASKTISKIKRLLH 180

Query: 174 RMAIAYPKVSFT----FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--- 226
             A+A P    +     S    + +     S+  +  +   +V+G +     V       
Sbjct: 181 AYAMARPGTRLSLKVLNSKNGKDNWTY-APSSTASIVDASLKVVGVETTGQCVCRTWPKN 239

Query: 227 -KSNEITLQGYTGIP----TFNRGNANQFYVFINGRT-VQDKFILSTIRTAYAETIPLG- 279
            + + + ++    +P     F +   +  Y+ ++GR    D+     I   Y   I    
Sbjct: 240 VEESNMPVKLLAYLPKADADFPKVGNSNQYISVDGRPLSSDRGTAKEIVNLYRSYIRSAA 299

Query: 280 --------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
                     P + L +   P   DVNV PAK  + F     +   + +  +    +   
Sbjct: 300 KANGTLTVNDPFLNLHISCPPGAYDVNVEPAKDDVLFAEREELIQTVEELFKATYGELQK 359

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
            + +   +    +       +  + +  +     Q       +R + +          S 
Sbjct: 360 DSENTEKQSTSVNGFSVLLRQPAVQEPVSPPATNQFPRIASMSRTTKDLTRAPQKDLQSV 419

Query: 392 DNDPVEESEATH 403
           ++D   +SE+  
Sbjct: 420 EDDDPSQSESHE 431


>gi|307170888|gb|EFN62999.1| 60S ribosomal protein L5 [Camponotus floridanus]
          Length = 948

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 154/414 (37%), Gaps = 33/414 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L  +    I   +II      +KEL+EN+LDA++  +E  +   G S  ++ DNG
Sbjct: 1   MPISALDVRTAKLITTTQIITSVYAVVKELMENALDADADNIEINLIDNGTSLIEVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G++  ++        TSKIS  +D   + TFGFRGEAL ++ AV+ + ++++  ++  G
Sbjct: 61  HGISKADVLYVGLPSYTSKISSFEDLDTLQTFGFRGEALNALCAVAEVIIITKTEEDVVG 120

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRR 174
               ++   +I        + GT V+ ++LF  +P R   +   +       L+  ++  
Sbjct: 121 TSYIMNHIGQIVKHESCHRSTGTTVQAKNLFKQMPVRRQIMTDTRRANQVIKLLETLLHC 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
             I    V   F    +  +    + +  N  E ++  +G   ++N   +  K  +  LQ
Sbjct: 181 FGICKSNVRIQFRVNNNLVFT---KPSLNNIKEAVNHTLGRKIMSNMEWIESKDTDFVLQ 237

Query: 235 GYTGIPTFNR----GNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL---- 286
                          + +  Y+F+N R ++ K +  +      +      Y +  +    
Sbjct: 238 LMLPSKKIQDLSEVSHPDLHYIFVNNRPIKHKSLEKSKVFDTVDKYMKKYYGLKSVEIVE 297

Query: 287 -----LLEIDPRQVDVNVHP---------AKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
                 + I      +N             K         +I+  I++      N    S
Sbjct: 298 QNVSNDISICYEDYILNSSKDIIDTERPMCKKRKIDAQEKVIQKHIVKEKPVHNNGYETS 357

Query: 333 TSSVLSKKMISSFH--QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                +  +I      +D       P  + S +N         N++   + L  
Sbjct: 358 LHKQQNIDLIQDQQHYKDALAHIQAPNLSDSDSNDIFPAVTSSNKMEECETLSQ 411


>gi|58736995|dbj|BAD89406.1| PMS1 nirs variant 9 [Homo sapiens]
          Length = 195

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 6/193 (3%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAI 177
            +     I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I
Sbjct: 122 VLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGI 181

Query: 178 AYPKVSFTFSTIK 190
             P +   F   K
Sbjct: 182 LKPDLRIVFVHNK 194


>gi|326485120|gb|EGE09130.1| hypothetical protein TEQG_08828 [Trichophyton equinum CBS 127.97]
          Length = 1039

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 159/427 (37%), Gaps = 48/427 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +KEL+ENSLDA ++ +      G            
Sbjct: 3   TIKPIEARSVHQIQSGQVIVDLCSVVKELVENSLDAGATSIGI----GTIRLI------- 51

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
                       +H TSK+S   D +++ TFGFRGEAL S+ AVS+LT+++   Q    A
Sbjct: 52  -------NYIALKHYTSKLSTFADLTSLQTFGFRGEALSSLCAVSNLTVVTAEAQQAPRA 104

Query: 120 Q--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    K+ S + VA   GT V + +LF  +P R     K+ + E   +  ++   A
Sbjct: 105 SKLDFEFSGKLKSTQIVAGQKGTTVSIENLFKPLPVRRRELEKNVKREYGKVIALLHAYA 164

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 165 CISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYGAKTLLALMPLDLDLEYEPST 224

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 N+ SN+I + G+   P F   R   ++   F+N R      I       Y    
Sbjct: 225 AAKRFSNQASNKIFVHGHISKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 283

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            L + P +    E+D    DVNV P K  I   +   +   +    + ++ +   +    
Sbjct: 284 NLSQSPFIFANFEMDTSAYDVNVSPDKRTILLHDAGALIESL----KASLTELFENEDQT 339

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           +    ++   Q             S+   Q+K          +  L  DD     D +P 
Sbjct: 340 VPVSQLTFSKQSQLTPKRGQTPPASVDAAQDKPEKPPGNADYSQELGHDDTVERNDREPT 399

Query: 397 EESEATH 403
           +  ++  
Sbjct: 400 QTPQSPM 406



 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 45/206 (21%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
             Q  D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++  
Sbjct: 796 AEQEQDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVKPKTLDLTAVEEEVIIDNLA 852

Query: 479 DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL-------------- 513
            L + G   E         G     I  +P     +   +++ +L+              
Sbjct: 853 ALEKNGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFDTRDLEELIVLLSEAPQQSQNNL 911

Query: 514 ----RDIIDEIIDSSTTY------------TLQDRIENILATMACYGSIRSGRKMQSIEM 557
               R+ ++   +                     ++  + A  AC  SI  G+ +   +M
Sbjct: 912 GKRAREELESDAEYIEPSGVASTPFSDYLVPRPSKVRKMFAMRACRSSIMIGKNLTHRQM 971

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
             +++ M        C HGRPT   L
Sbjct: 972 ETVVKHMGTIDKPWNCPHGRPTMRHL 997


>gi|8928225|sp|P96082|MUTL_THEAQ RecName: Full=DNA mismatch repair protein mutL
 gi|1777768|gb|AAB40601.1| Hexb/MutL homolog [Thermus aquaticus]
          Length = 533

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++   +A GE++     A++EL+EN+LDA + RV   + GGG     + D+G G
Sbjct: 2   IRPLPPELRGLLARGEVLLSVKDAVRELLENALDAGARRVRVELWGGGLERIVVEDDGEG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  EE+P+AV+   TSK+  D   I T GFRG+AL ++   + L + SRP     G  + 
Sbjct: 62  IPLEELPLAVEPFATSKLQ-DLERIATLGFRGQALYALRQAATLKIRSRPRGQVGGGLLL 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             GE++  +RP    PGT VEV  LF          +  + E   + D+++R  + +P +
Sbjct: 121 ARGERV-ELRPAPAPPGTRVEVLGLFA------GEGRDPKAEARGVLDLLKRYLLHHPHL 173

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           S         R             E   Q  G         L  K     L+G    P  
Sbjct: 174 SLVLFLEGEARLLFP----GAGLKEAARQAFGGLLAERLFPLE-KGGAFALEGLLTGPQV 228

Query: 243 NRGNANQFYVFINGRTVQDKF-ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   +  ++ +NGR V     +L  +R AY E +P G YPV VL L + P    + +  
Sbjct: 229 SRTRPDLLFLAVNGRPVALPEGVLRAVRRAYRELLPEGHYPVGVLNLSLPPGAYRLRLDA 288

Query: 302 AKSYIRFRN 310
            K  +    
Sbjct: 289 RKEEVALSK 297



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 21/187 (11%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
            A   ++Y++++  D + IVDQHAAHER++FE++        +          +D    E
Sbjct: 343 WATFRESYLLAEAEDAVYIVDQHAAHERILFEELLARLREEGLKPLPYPVLVELDEEPPE 402

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI--PQLLRDIIDEIIDSSTTY 527
            + +              E FGP  + +   P  L    +  P++ R+    +     + 
Sbjct: 403 ASPL-----------FGIEGFGPGRVRLLSAPPFLHPYPLLPPEIFRE---SLKGEGRS- 447

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
               R+  +LA +AC  ++++G  +   E   LL  +        C HGRP  + LK  D
Sbjct: 448 ----RLRGLLARLACLPALKAGHPLARAEGQALLDALLACETPWVCPHGRPVLLHLKEED 503

Query: 588 IEKLFGR 594
           + + FGR
Sbjct: 504 LIRRFGR 510


>gi|325119066|emb|CBZ54618.1| hypothetical protein NCLIV_050460 [Neospora caninum Liverpool]
          Length = 1620

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/438 (19%), Positives = 157/438 (35%), Gaps = 35/438 (7%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  +S  + + + + +++       KELIEN++DA ++ VE     GG    ++ DNG 
Sbjct: 159 RLHAMSASVADGVCSQQVVLGLKSICKELIENAIDAGATTVEVRFVDGGMESIEVRDNGS 218

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G+  ++ PM  +RH TSKI   +D  + + T GFRGEAL S+ A+S + +++R       
Sbjct: 219 GIGPQDFPMLGRRHATSKIDKFEDLYSALDTMGFRGEALASLCALSDVVILTRTASEPFA 278

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-------------EQVE 164
           +++       I    P A   GT V V +LF ++P R   L+              ++  
Sbjct: 279 SRLVFDHHGNIVHQEPAAREVGTSVTVSNLFASLPLRRRALRQQRQKHLQDALAFLQKFA 338

Query: 165 TNLITDVIRRMAIAYP--------KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
                D    +    P                  S    +N + T     +    V G  
Sbjct: 339 LLHAADCRVLVTDFIPGDANRTGEGSGSQRRKGGSTVTLLNTRGTAARLIDAAVSVYGAR 398

Query: 217 FINNA----VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF-ILSTIRTA 271
            +       ++  E   E +L+     P      ++    F+N R V     +   I   
Sbjct: 399 QMQQCSQVSLKGTEPGREWSLEVLLSRPPLGVRTSSLQLFFVNNRVVDFPPLLQKLINKK 458

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           Y E      +P+V+  + + P  ++VN+   K  +       I   ++           +
Sbjct: 459 YREVCSRQCFPIVIAFVAVAPHLLEVNLRKDKQEVLLAVEKEITEALLTPSPSLPESTRL 518

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
            TS    +   S   ++   +              E    +E R  T      D+     
Sbjct: 519 LTS---CRSPGSLGRKETWKQEDDGALRRGEDRKAEP--EKEGRGETAAGRHRDERDQKA 573

Query: 392 DNDPVEESEATHYQLGIA 409
               VE+  A     G  
Sbjct: 574 HEALVEDRRAPRLDAGFP 591



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 527  YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                 ++  ILA+ AC  +I  G  +   +M ++L  +        C HGRPT   L
Sbjct: 1342 QCRPKKVWEILASRACRSAIMVGDTLSVSQMQKVLSNLSTLHLPFNCPHGRPTVRHL 1398


>gi|266618993|ref|ZP_06111928.1| DNA mismatch repair protein MutL [Clostridium botulinum Bf]
 gi|263529157|gb|EEZ28463.1| DNA mismatch repair protein MutL [Clostridium botulinum Bf]
          Length = 574

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVD 430
           LQ++  + ++L  ++  T S   +  E      Y       Q +  YI+ +    L I+D
Sbjct: 350 LQKDNKNLDNLYLNEHNTNSSSINIKENKPNNFYVDMKIIGQFNNTYILIEKDKELYIID 409

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHAAHE+++FEK + +     + SQ LL+P +I+L E E  +  E+ +     G   E F
Sbjct: 410 QHAAHEKVLFEKFKSEIEKGYVVSQILLSPVVIELSEDEFNIYEENKDIFKNSGFSVEAF 469

Query: 491 GPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
           G   I I+E+P IL K N+  L  DI+  + +  +  T   +   I AT+AC  ++++  
Sbjct: 470 GECTINIKEVPLILGKPNVENLFMDILYNLKNMKSKETSTIKYNAI-ATLACKSAVKAND 528

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            ++  E+ +L+ +M    N   C HGRPT IK  L D+EK F R
Sbjct: 529 NLKEEEIKKLIEDMLILNNPYTCPHGRPTMIKFTLKDLEKKFKR 572



 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 130/251 (51%), Gaps = 3/251 (1%)

Query: 90  FGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFF 149
            GFRGEAL SI +VS   L SR    N G +I I G KI  ++    N GT +EV DLF+
Sbjct: 1   MGFRGEALASISSVSKTKLKSRVDSYNFGKEIYIEGGKIEYLKDTGCNVGTTIEVSDLFY 60

Query: 150 TIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
            +PARL FLKS + +++ I+D++ R  +A+P +SF          K       GN  + I
Sbjct: 61  NVPARLKFLKSARSDSSAISDIVNRFILAHPDISFNLINKGKQSIK---SYGTGNLKDSI 117

Query: 210 SQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIR 269
             V  +    N +      + I++ G+ G P  +R +     +F+N R V+ KFI + + 
Sbjct: 118 RCVYNKTISENLINFENHKDIISVYGFIGKPEISRKSRTNQSIFVNKRYVKSKFITAAVE 177

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            A+   + +  YP  V+ ++I P  +DVNVHP KS ++F++   +   I  ++ +AI  +
Sbjct: 178 NAFKSFLTVNSYPFFVIFIDIFPEYIDVNVHPTKSEVKFKDERAMFKTIFDAVHEAIKGE 237

Query: 330 GISTSSVLSKK 340
              + +    K
Sbjct: 238 LKESFTNFFNK 248


>gi|218296479|ref|ZP_03497207.1| DNA mismatch repair protein MutL [Thermus aquaticus Y51MC23]
 gi|218243021|gb|EED09553.1| DNA mismatch repair protein MutL [Thermus aquaticus Y51MC23]
          Length = 655

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 138/309 (44%), Gaps = 14/309 (4%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++   +A GE++     A++EL+EN+LDA + RV   + GGG     + D+G G
Sbjct: 2   IRPLPPELRGLLARGEVLLSVKDAVRELLENALDAGARRVRVELWGGGLERIVVEDDGEG 61

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           +  EE+P+AV+   TSK+  D   I T GFRG+AL ++   + L + SRP     G  + 
Sbjct: 62  IPLEELPLAVEPFATSKLQ-DLERIATLGFRGQALYALRQAATLKIRSRPRGQVGGGLLL 120

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             GE++  +RP    PGT VEV  LF          +  + E   + D+++R  +  P +
Sbjct: 121 ARGERV-ELRPAPAPPGTRVEVLGLFA------GEGRDPRAEARGVLDLLKRYLLHRPHL 173

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
           S         R             E   Q  G         L  K     L+G    P  
Sbjct: 174 SLALFLEGEARLLFP----GAGLKEAARQAFGGLLAERLFPLE-KGGAFALEGLLSGPQV 228

Query: 243 NRGNANQFYVFINGRTVQDKF-ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           +R   +  ++ +NGR V     +L  +R AY E +P G YPV VL L + P    + +  
Sbjct: 229 SRTRPDLLFLAVNGRPVALPEGVLRAVRRAYRELLPEGHYPVGVLNLSLPPGAYRLRLDA 288

Query: 302 AKSYIRFRN 310
            K  +    
Sbjct: 289 RKEEVALSK 297



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 20/145 (13%)

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
                  Q  ++Y++++  D L IVDQHAAHER++FE++        +          +D
Sbjct: 338 PPLRYLGQFRESYLLAEAEDALYIVDQHAAHERILFEELLARLREEGLKPLPYPVLVELD 397

Query: 465 LLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE-IIDS 523
               E + +              E FGP  + +   P  L    +  LL +I  E +   
Sbjct: 398 GEPPEASPL-----------FAFEPFGPGRVRLLSAPPFLHPYPL--LLPEIFRESLKGE 444

Query: 524 STTYTLQDRIENILATMACYGSIRS 548
             +      +  +LA +AC  +I++
Sbjct: 445 GRS------LRGLLARLACLPAIKA 463


>gi|71649195|ref|XP_813339.1| mismatch repair protein PMS1 [Trypanosoma cruzi strain CL Brener]
 gi|70878213|gb|EAN91488.1| mismatch repair protein PMS1, putative [Trypanosoma cruzi]
          Length = 774

 Score =  200 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 151/398 (37%), Gaps = 30/398 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L      +++AG++I   S  +KEL+ENSLDA +  V   I   G     + D+G G
Sbjct: 2   IKRLDAASARKLSAGQVITDLSSVLKELVENSLDAGAHTVTVRIENYGLDKIVVNDDGSG 61

Query: 63  MT-----------SEE--IPMAVQRHCTSKISDDFSNI-----HTFGFRGEALPSIGAVS 104
           +             E+  +P+   R  T  + ++          + GFRGEAL  +  +S
Sbjct: 62  LALGDLLTSEGTVREDASLPLLACRATTKNLMEEADASVAQFRDSLGFRGEALHCLANLS 121

Query: 105 HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM----NPGTIVEVRDLFFTIPAR-LNFLK 159
            +++ +   ++           K             +PGT + V  LF  +P R   F K
Sbjct: 122 EVSIQTMSAESQPATLCITYDVKTHRTSVNVTQERKHPGTTIVVEGLFRALPVRHREFNK 181

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY---KMNFQSTNGNFPERISQVIGED 216
           + + +    T ++++ A+++P V    +   S +     +   +   +    +++  G  
Sbjct: 182 NRKKQLLAATLLMKQYALSHPHVRLLMTHCLSPQSAPATLVSLTGTNDIHRALAEAYGGR 241

Query: 217 FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
           ++ +   +  + +  T+ G+    T  R +A+   + ++GR V    I   +  AYAE  
Sbjct: 242 YLADMNRVEWEFSFGTITGFVSKVTSGRLSADMQVLALDGRLVDLPIISKAVSDAYAECQ 301

Query: 277 P---LGRYPVVVLLLEIDPR-QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           P      YPV  L L        DVN+ P K  + F   +     +              
Sbjct: 302 PNAAQRAYPVFFLHLSCGNHVPYDVNLAPNKRKVLFTEESKYAEEVHSRALMEFQASTDG 361

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
                   +  +   D      L    T ++ T    F
Sbjct: 362 IDVDRHIHIERTRRTDWKATQDLKLTRTPVSATSFTQF 399



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 82/196 (41%), Gaps = 4/196 (2%)

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
           T   +N      + + ++  I   Q +  +I++   D + ++DQHAA E+  +E +   +
Sbjct: 565 TEQTENQIATYLDKSSFKEMIIHGQFNHGFILASLGDDMFVIDQHAADEKFNYECLLSQY 624

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER-FGPNAIAIREIPAILSK 506
            +     Q LL    + +   +  L + H E+L + G   +R    N + +  +P +  +
Sbjct: 625 KARP---QPLLAAVSVSMDPHDVDLAVLHSEELRQHGFTVKRGEDANKLLVYSVPVLQYE 681

Query: 507 KNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEK 566
              P  + +++ +I            + + +AT AC  SI  G  +    M  ++  + +
Sbjct: 682 AVGPHDIVELVQQIALYGNITKPLRSLWHSMATKACRSSIMIGTALSEKTMRSVVSRLGE 741

Query: 567 NPNSSQCNHGRPTFIK 582
                 C HGRPT   
Sbjct: 742 LEQPWNCPHGRPTLRH 757


>gi|84998604|ref|XP_954023.1| DNA mismatch repair (MLH1 ) [Theileria annulata]
 gi|65305021|emb|CAI73346.1| DNA mismatch repair (MLH1 homologue), putative [Theileria annulata]
          Length = 904

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  +++ +IAAGEII RPS AIKELIENS+DA ++ +   ++     F +I DNG G
Sbjct: 24  IRPLPAEVVKKIAAGEIIARPSSAIKELIENSVDAGATEIRVNLSSNPLDFCEIIDNGSG 83

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           ++ +++ +  QR+ TSK +D    + + GFRGEAL S+   SH+T+ SR    N    + 
Sbjct: 84  VSEKDLMIICQRYTTSKTTDSIEGVRSLGFRGEALSSLSQNSHVTISSRTENENMRTVMT 143

Query: 123 ISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAY 179
            S  +  +  +R      G  ++  +LF+    R  + L +   E      ++++ +I +
Sbjct: 144 YSECEPVLDEIRYEEGPRGFHLKYENLFYNYEIRSKSLLSNINSEFISCLHLVQKYSIHF 203

Query: 180 PKVSFTFSTIKSNRYKMN 197
           P ++F F+   S    +N
Sbjct: 204 PNINFVFNRTSSPILDLN 221



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 1/122 (0%)

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           +RI  +   + +   V  N        +G    P       + F +F+N R +    +  
Sbjct: 315 KRIYGLKVSNVLQEVVFNNFDDLFFNCKGLISHPNQPCKL-DMFILFVNNRLIDLPNLRR 373

Query: 267 TIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
            I   Y +         V L + +   Q+D N+HP K  I   N   I   I +     I
Sbjct: 374 MIFNTYNDITNNRYRRFVYLSIFVPYDQIDSNIHPTKKRIMIENQAEIVEQITKFFHDKI 433

Query: 327 NK 328
            +
Sbjct: 434 TE 435


>gi|156056991|ref|XP_001594419.1| hypothetical protein SS1G_04226 [Sclerotinia sclerotiorum 1980]
 gi|154702012|gb|EDO01751.1| hypothetical protein SS1G_04226 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 845

 Score =  199 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 143/376 (38%), Gaps = 42/376 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  LS   I+ + + +++  P+  IKELI+N+LDA+++ ++ +I+       ++ DNG
Sbjct: 1   MTINALSASTIHLLGSSQVLTTPASLIKELIDNALDAKATCIDILISQNTIDKIEVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  +++    +R  TSK+    +  N+   + GFRGEAL S   +  +++ ++     
Sbjct: 61  DGIQLDDLDALGRRGHTSKLRTFTELRNLGGRSLGFRGEALASACQLGDVSITTKTDGQP 120

Query: 117 TGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRR 174
            G ++ +     I S    +   GT V V +    +P R     K        I ++++R
Sbjct: 121 VGTRVKLKAMGGIQSQSRTSHPIGTTVCVMNFMSKLPVRKQTALKEAPKTIGKIQELVKR 180

Query: 175 MAIAYPKVSFTFSTI-KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE------- 226
            A+A   +  TF  +  S          +G   + +S +IG D      E +        
Sbjct: 181 YALARVSIKLTFKIVKGSKGAWSYAPRPHGGIKDSVSLIIGRDAALQCSETSMLFSDLPD 240

Query: 227 ----------------KSNEITLQGYTGIPTFN-RGNANQFYVFINGRTVQD-------- 261
                            ++   L+ +      +        Y+ ++ R V          
Sbjct: 241 HEGLNVLAGVGTANEVAASHFCLKAFLPRNDADLNKLGKGQYLSVDSRPVASERGTMKKI 300

Query: 262 -KFILSTIRTAYAETIPLG--RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
                  +R+A          + P + L +       D NV PAK  I F N  ++    
Sbjct: 301 ITIFKKYVRSALTAESSSEKIKNPFIRLNIVCPEASYDPNVEPAKDDIIFENEKLVLEAA 360

Query: 319 IQSIQKAINKKGISTS 334
            +  +    +     S
Sbjct: 361 EKMFKNFYGECDTVIS 376


>gi|240275443|gb|EER38957.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 187

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/154 (40%), Positives = 92/154 (59%), Gaps = 11/154 (7%)

Query: 2   KIRK-LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           KI+K L   +IN+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG
Sbjct: 32  KIQKALDPDVINKIAAGEIIVAPMHALKELIENSVDAGATSVEILVKDGGLKLLQITDNG 91

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++  
Sbjct: 92  HGIDCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCA 151

Query: 119 AQIAISGEKISS--------VRPVAMNPGTIVEV 144
            +   S  K+           +P A   GT + V
Sbjct: 152 WRAHYSDGKLVPAKPGQTAEPKPTAGRGGTQITV 185


>gi|295670317|ref|XP_002795706.1| DNA mismatch repair protein Mlh1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226284791|gb|EEH40357.1| DNA mismatch repair protein Mlh1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 763

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 151/357 (42%), Gaps = 16/357 (4%)

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   +
Sbjct: 33  IQCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAWK 92

Query: 121 IAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
              +  K+           +P A   GT + V DLF+ IP R    +S   E   I DV+
Sbjct: 93  AHYNDGKLVPAKPGQSAEPKPTAGRGGTQITVEDLFYNIPTRRRAFRSSSEEYAKILDVV 152

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--E 230
            R A+    V+ +          ++  + +    +RI Q+ G    +  V  N +     
Sbjct: 153 GRYAVHCSGVAVSCKKHGDAGVSISTSTNSTTV-DRIRQIHGSAVASELVNFNVEDPGLG 211

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
               G+     ++        +FIN R+V+   +   I   Y+  +P G +P   L LEI
Sbjct: 212 FRASGWVSNANYH-VKRTTILLFINHRSVESSTVRRAIEQTYSNFLPKGGHPFTYLDLEI 270

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           +P++VDVNVHP K  + F N   I + I  +IQ+ +      +S     + +    ++ +
Sbjct: 271 EPQRVDVNVHPTKREVNFLNEDEIISSICTAIQQQLATVD--SSRTFMVQTLLPVGRNQS 328

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
             +   +  +          L   +    + L   D T  +    +  + +    + 
Sbjct: 329 TLSSNAEGNSMNDKPPTSRTLSGTKRPYENNLVRTDATMRKITSMLPPASSQSTPIL 385


>gi|253744803|gb|EET00953.1| Mlh1-like protein [Giardia intestinalis ATCC 50581]
          Length = 794

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/487 (18%), Positives = 171/487 (35%), Gaps = 71/487 (14%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I  L  + + ++AAGE+I+RP  A KELIEN+ DA++  +   ++        + D 
Sbjct: 1   MPQIHLLDPETVAKMAAGEVIQRPFNAAKELIENATDADAPAIGLFVSNNCYDLIMVYDT 60

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL SI  VS + ++S+      
Sbjct: 61  GHGIELADYPLLCHRFATSKITTFNDIYSIQSFGFRGEALASISYVSRMIVISKVENQPA 120

Query: 118 GAQIAIS------------GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVET 165
              + ++                     +  N  TI+ V DLF+    R N ++S +   
Sbjct: 121 HLAVYMNGKLHFDPETLAAEYTDFFTNTLVSNSFTIICVTDLFYADSIRRNQIRSSKASL 180

Query: 166 NLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNFQSTNGNFPERISQVIGED 216
           ++   ++   A  +  + + +F +               ++  S   +    I +     
Sbjct: 181 DMQDLLMSISAANHTREYAISFISDSQATQRELQAWLDDIHTTSGMLSLISNIIESRVTA 240

Query: 217 FINNAVELNEKSNEITLQGYT--------GIPTFNRGNANQFYV---------------- 252
                V    +     L             +P  +                         
Sbjct: 241 LHFKPVTTRYERLLQVLTALLNQTRSSGNTMPQVHSITKEHLCNTCSELSFYFTESVDHS 300

Query: 253 -----------FINGRTVQDKFILSTIRTAYAETIP-LGRYPVVVLLLEIDPRQVDVNVH 300
                      FINGR VQ   + S +++     +         +L +  +P   D NVH
Sbjct: 301 QQNRRLSNLLIFINGRGVQYPRLKSAVQSVIDVYLSAFSTIQAGILWIVTEPGGCDPNVH 360

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA- 359
           P+K  +       I + II  + + +    +     L  +        +   + + +   
Sbjct: 361 PSKERVLLIEEEAIYSAIIDMLTEHMKVHYMKEVEPLLSQPRLKLQPQSTYSSSMRRSRQ 420

Query: 360 ------TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
                  +   T   L+ Q +  ST  +L  D+   +  N  + E     +      A +
Sbjct: 421 LVNTLDPTPKGTSSPLYKQRHDSSTISILRFDNIQRAPCNKEIPE----VHAPLPCSAPL 476

Query: 414 HQNYIIS 420
           H  +  +
Sbjct: 477 HLPFESN 483


>gi|225431413|ref|XP_002272829.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1245

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 158/367 (43%), Gaps = 30/367 (8%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M+ I+ L E + + + +G I+   +  ++ELI NSLDA +++V   ++ G   + ++ D+
Sbjct: 1   MRSIKPLPEAVHSSVRSGIILFDLTRVVEELIYNSLDAGATKVSVSVSVGTC-YIKVVDD 59

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFS---NIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+T + + +  +R+ TSK+           +FGFRGEAL SI  VS L ++++     
Sbjct: 60  GTGVTRDGLVLLGERYATSKLHHLTEMDAATGSFGFRGEALGSISDVSLLEIVTKTQGRP 119

Query: 117 TGAQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL-ITDVIR 173
            G +  + G K     +     + GT V VRDLF+  P R  +L+S   +    +   + 
Sbjct: 120 NGYRKVMKGCKCLYLGIDDDRQDVGTTVVVRDLFYNQPVRRKYLQSSPKKVLHSVKKCVF 179

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
           R+A+ +  VSF    I+S+  ++    ++ +    +   +G +  ++  ELN     + L
Sbjct: 180 RIALVHSNVSFKVVDIESDD-ELLCTKSSSSPLSLLISGLGIEDSSSLHELNITDGILKL 238

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-------------- 279
            GY   P           V IN R +    I   +                         
Sbjct: 239 SGYVSGPCNTFS----IKVDINSRFICKGPIHKLLNQLATGFKSFDPWKASSGSQDKKRS 294

Query: 280 ---RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
               YP  +L L       D+   P+++ + F++   I  F+ +++ +  ++      S 
Sbjct: 295 RCQGYPTYILNLRCPQSHYDLTFEPSRTAVEFKDWVPILAFLEKAVTRFWSEHIAHGESS 354

Query: 337 LSKKMIS 343
           +     S
Sbjct: 355 VHANKTS 361



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 410  CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI-IDLLEG 468
              Q+ + +I       L I+DQHAA ER+  E++RQ   S ++ + T L  E  + L E 
Sbjct: 1009 LQQVDKKFIPVVADGTLAIIDQHAADERIRLEELRQKVLSGEVKTITYLDAEQELVLPEI 1068

Query: 469  ECALIMEHDEDLHRLGIKAERFGPNA----------------IAIREIPAILSKKNIPQL 512
               L+  + E +   G        N+                I +  +P IL        
Sbjct: 1069 GYQLLHTYAEQIQNWGWICNIHAQNSRSFTKNLDLLHKKPTVITLLAVPCILGVNLSDVD 1128

Query: 513  LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
            L + + ++ D+  + T+   +  +L   AC G+I  G  +   E + ++ E+++     Q
Sbjct: 1129 LLEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDALLPSECSLIVEELKRTSLCFQ 1188

Query: 573  CNHGRPTFIKL 583
            C HGRPT + L
Sbjct: 1189 CAHGRPTTVPL 1199


>gi|71033271|ref|XP_766277.1| DNA mismatch repair protein MLH1 [Theileria parva strain Muguga]
 gi|68353234|gb|EAN33994.1| DNA mismatch repair protein MLH1, putative [Theileria parva]
          Length = 892

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 3/198 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L  ++I +IAAGEII RPS AIKELIENS+DA ++ +   +      F +I DNG G
Sbjct: 7   IRPLPPEVIKKIAAGEIIARPSSAIKELIENSIDAGATEIRVNLGSNPLDFCEIIDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           ++ +++ +  QR+ TSK ++    + + GFRGEAL S+   +H+T+ SR   +     + 
Sbjct: 67  VSEQDMLIICQRYTTSKTTNSIEGVRSLGFRGEALSSLSQNAHVTISSRTESDAMRTIMT 126

Query: 123 ISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAY 179
            S  +  +  VR      G  ++  +LF+    R  + L +   E      ++++ +I +
Sbjct: 127 YSECEPVLDEVRYEDGPVGFHLKYENLFYNYEIRSKSLLSNINSEFISCLHLVQKYSIHF 186

Query: 180 PKVSFTFSTIKSNRYKMN 197
           P ++F F+   S+   +N
Sbjct: 187 PNINFVFNRTNSSILDLN 204



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 1/117 (0%)

Query: 207 ERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS 266
           +RI  +   + +   V  N  +     +G    P       + F +F+N R +    +  
Sbjct: 295 KRIYGLKVSNVLQEVVFNNFDNLFFNCKGLISHPNQPCKL-DMFILFVNNRLIDLPHLRR 353

Query: 267 TIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
            I ++Y +         V L + I   ++D N+HP K  I   N   I + II+   
Sbjct: 354 MIFSSYNDISNNRYRRFVYLSIFIPYDKIDSNIHPTKKKIMIENQAEIVDQIIKFFH 410


>gi|300123479|emb|CBK24751.2| unnamed protein product [Blastocystis hominis]
          Length = 789

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/397 (23%), Positives = 163/397 (41%), Gaps = 20/397 (5%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNI 87
           +IENS+DA ++ +   I+ GG    QI DNG G+  E++P+  +R+ TSK+   DD S I
Sbjct: 1   MIENSIDAHATNIIISISHGGLKQMQIQDNGDGILKEDLPILCERYTTSKLRILDDLSTI 60

Query: 88  HTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV--RPVAMNPGTIVEVR 145
            TFGFRGEAL SI  VS + ++++   +  G +    G ++       VA   GT + V 
Sbjct: 61  QTFGFRGEALASISTVSRVMVVTKRESDICGWKARYRGNELIDGKLEAVASTKGTSITVD 120

Query: 146 DLFFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN 204
           DLF+TIP+R       E  ET  I  +++  +I Y     +F   +     +       +
Sbjct: 121 DLFYTIPSRQTMYLGKESEETKQIVSLLQLFSIHYAPQGISFLLKEIPNRVLFKSPRCAS 180

Query: 205 FPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFY------VFINGRT 258
             + I+ V+G         +  +        ++     +  +           +F+NGR 
Sbjct: 181 LEDSIAGVLGSAIRPTLRRIRVERESGVECPFSAEIVLSPKSPIPISPAVSFVLFVNGRA 240

Query: 259 VQDKFILSTIRTAYAETIPL--------GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRN 310
           +Q+  +   IR    +             +     + LEID R VDVNVHP K  + F +
Sbjct: 241 IQNSRLRQGIRRVLEQYYYCSDSNSRSRNQSQFCYVSLEIDTRMVDVNVHPNKREVCFLD 300

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD-NAPKTHLPKYATSLTNTQEKL 369
              +   I+++++  I++     +             D    ++   K     +    + 
Sbjct: 301 EDYVVKRIVETVETEIDRALSLQAVGKVTPTKGVSRGDGVCAQSASKKVRVDYSQRTIQF 360

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
             QEN +  +D    ++      +  V    A     
Sbjct: 361 ATQENSICLDDSWMGEESADPARDSAVSTVSAVSPIH 397


>gi|328791360|ref|XP_003251553.1| PREDICTED: PMS1 protein homolog 1-like [Apis mellifera]
          Length = 291

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 142/324 (43%), Gaps = 50/324 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  I   ++I   S A KELIEN+LDA +  +E  +   G +  ++ D+G
Sbjct: 1   MTISALDKDTVKLITTTQVITSISTAAKELIENALDAGAKNIEINLIDNGCTLIEVKDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+++ + P       TSK+    D  ++ T+GFRGEAL ++ +VS+LT++++  Q+   
Sbjct: 61  NGISNVDTPYMALSSYTSKLCSFSDLDSLETYGFRGEALHALSSVSNLTIITKTEQDEAA 120

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
               I     I +  P   + GT V+V+++F  +P R                       
Sbjct: 121 ISYTIDHYGCILNSEPCHRSTGTTVQVKEIFKQMPVRRQI-------------------- 160

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
                             +  + +  +F E I+ ++G+    N   ++    +I ++   
Sbjct: 161 ------------------ITKKPSTNSFEESIAYILGKKITCNMDWIDITDTDIKMKLMV 202

Query: 238 G----IPTFNRGNANQFYVFINGRTVQDKFIL----STIRTAYAETIPLGRYPVVVLLLE 289
                   F    ++  Y+F+N R ++ K +       I  A+ + +   + P+ V+ + 
Sbjct: 203 PLKTVKNDFELFQSDSQYIFVNNRPIKYKELEKIVIKIILEAFGQELSRKK-PIFVIYIL 261

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTI 313
           I+   +DVN+ P K+++ F+    
Sbjct: 262 INAANIDVNLDPNKNFVLFKEQRS 285


>gi|4239950|dbj|BAA74753.1| PMS2L13 [Homo sapiens]
 gi|119596966|gb|EAW76560.1| hCG2023604, isoform CRA_b [Homo sapiens]
          Length = 389

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 3/184 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 164 IKPIDRKSVHQICSGPVVPSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 223

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 224 VEEENFEGLTLKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCHVSAKVGTR 283

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KI    P     G  V V+ LF T+P      +    +              +
Sbjct: 284 LVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQF 343

Query: 180 PKVS 183
           P+ S
Sbjct: 344 PEAS 347


>gi|1304121|dbj|BAA07511.1| PMS3 [Homo sapiens]
 gi|1407577|dbj|BAA07470.1| hPMS3 [Homo sapiens]
          Length = 256

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 3/184 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 31  IKPIDRKSVHQICSGPVVPSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 90

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 91  VEEENFEGLTLKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCHVSAKVGTR 150

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KI    P     G  V V+ LF T+P      +    +              +
Sbjct: 151 LVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQF 210

Query: 180 PKVS 183
           P+ S
Sbjct: 211 PEAS 214


>gi|160419154|sp|A4D2C0|PMS4L_HUMAN RecName: Full=Postmeiotic segregation increased 4-like protein
 gi|51094588|gb|EAL23840.1| similar to PMS4 [Homo sapiens]
          Length = 255

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 3/184 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 30  IKPIDRKSVHQICSGPVVPSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 89

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 90  VEEENFEGLTLKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCHVSAKVGTR 149

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KI    P     G  V V+ LF T+P      +    +              +
Sbjct: 150 LVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQF 209

Query: 180 PKVS 183
           P+ S
Sbjct: 210 PEAS 213


>gi|160419152|sp|A4D2B8|PM2P1_HUMAN RecName: Full=Putative postmeiotic segregation increased 2-like
           protein 1; AltName: Full=PMS2-related protein 2;
           AltName: Full=Postmeiotic segregation increased 2-like
           protein 13; AltName: Full=Postmeiotic segregation
           increased 2-like protein 6; AltName: Full=Postmeiotic
           segregation increased 2-like protein 8; AltName:
           Full=Postmeiotic segregation increased protein 3;
           Short=hPMS3; AltName: Full=Postmeiotic segregation
           increased protein 8; AltName: Full=Putative postmeiotic
           segregation increased 2 pseudogene 1
 gi|51094586|gb|EAL23838.1| postmeiotic segregation increased 2-like 1 [Homo sapiens]
          Length = 440

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 3/184 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 215 IKPIDRKSVHQICSGPVVPSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 274

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 275 VEEENFEGLTLKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCHVSAKVGTR 334

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KI    P     G  V V+ LF T+P      +    +              +
Sbjct: 335 LVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQF 394

Query: 180 PKVS 183
           P+ S
Sbjct: 395 PEAS 398


>gi|308503723|ref|XP_003114045.1| CRE-PMS-2 protein [Caenorhabditis remanei]
 gi|308261430|gb|EFP05383.1| CRE-PMS-2 protein [Caenorhabditis remanei]
          Length = 831

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 157/384 (40%), Gaps = 55/384 (14%)

Query: 2   KIRKLSEKIINQIA-AG--------------EIIERPSIAIKELIENSLDAESSRVETVI 46
           KI K+S+ +  ++  A               +++   S A+++LI+NS+DA ++ ++  +
Sbjct: 5   KIEKISKDVAERLTTAQVLKFFTFYVKIELLQVVVSLSSALRQLIDNSIDAGATIIDIRV 64

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS 104
              G    ++ DNG G+ S       + H TSK++   DF  + T GFRGEAL ++  VS
Sbjct: 65  KNNGFDSIEVQDNGSGIESHNFDALCKAHSTSKLTQFSDFDKLATLGFRGEALNALCTVS 124

Query: 105 HLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQ 162
            +++ +R   +  G ++       I+  +  A   GT + V  LF T+P R     ++++
Sbjct: 125 SVSIFTRAADSEIGTRLTYDHSGSITERQSAARELGTTIIVNKLFETLPVRRKELERNQK 184

Query: 163 VETNLITDVIRRMAIAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
            E   +   ++  A+  P V    +          +       +  + ++ + G   + N
Sbjct: 185 REFVKLLSTVQSFALLCPHVKILCTNNIAGKKTNIICTPGGTSSVQDVVTNLFGSRRVEN 244

Query: 221 --------------------------AVELNEKSNEITLQGYTGIPTFNRGN--ANQFYV 252
                                      +E         ++G+        G   +++ +V
Sbjct: 245 SKAGSSALIPILQEQPDFEIMTMHSIPMEETHFFELFKIRGFVSNCEHGCGRGTSDRQFV 304

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
           +IN R V+   + + I   Y +     +YP++VL ++     +DVNV P K  +      
Sbjct: 305 YINNRPVEYTRVCTVINDVYKQF-NKSQYPIIVLFID-----IDVNVTPDKKTVMLEKER 358

Query: 313 IIRNFIIQSIQKAINKKGISTSSV 336
            +   I  S+ K   K   S S+V
Sbjct: 359 HLLAVIRASMMKTYLKIVGSHSTV 382



 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 14/284 (4%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
            +   I   I +S    +N    S +S +S+ ++    +       L        +   +
Sbjct: 543 DDGIEIIEPIQESQDVVLNDSQCSQNSQVSQYLLRPQQKIKFSMRRLLDVYARHIDVNPE 602

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESE------ATHYQLGIACAQIHQNYIISQT 422
             +QE     ND L      + ++     E +         +       Q +  +II + 
Sbjct: 603 --VQEEDTHENDALDEITTGFKKEESCDAERQLSRSLTKEDFTNMKVIGQFNHGFIICRL 660

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
              L IVDQHA+ E+  FE+++   NS K+T Q L TP  +     +  +I E+      
Sbjct: 661 RGHLFIVDQHASDEKYNFERLQ---NSAKLTKQPLFTPTALGFGSVQELIIRENLPIFQA 717

Query: 483 LGIKAE-RFGPNAIA--IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT 539
            G   E R     +   +   P +L+++     L +I+  + D         RI NI A+
Sbjct: 718 NGFDFEFRENDGCLKTFLTARPELLNQQLTNSDLEEILAVVSDYPNQMYRPVRIRNIFAS 777

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            AC  S+  G+ +   EM R++R + K      C HGRPT   L
Sbjct: 778 KACRKSVMIGKPLDQREMTRIIRHLAKLDQPWNCPHGRPTIRHL 821


>gi|226294058|gb|EEH49478.1| DNA binding protein [Paracoccidioides brasiliensis Pb18]
          Length = 758

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 146/333 (43%), Gaps = 14/333 (4%)

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  +++ +  +R  TSK+   +D S+I T+GFRGEAL SI  ++HLT+ ++   ++   +
Sbjct: 33  IQCDDLGILCERFTTSKLKAFEDLSSIGTYGFRGEALASISHIAHLTVTTKTAGSSCAWK 92

Query: 121 IAISGEKISS--------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
              S  K+           +P A   GT + V DLF+ IP R    +S   E   I DV+
Sbjct: 93  AHYSDGKLVPAKPGQSAEPKPTAGRGGTQITVEDLFYNIPTRRRAFRSSSEEYAKILDVV 152

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--E 230
            R A+    V+ +      +   ++  + +    +RI Q+ G    +  V  N +     
Sbjct: 153 CRYAVHCSGVAVSCKKHGDSGVSISTSTNSTTV-DRIRQIHGSAVASELVTFNVEDPGLG 211

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
               G+     ++        +FIN R+V+   +   I   Y+  +P G +P   L LEI
Sbjct: 212 FRASGWVSNANYH-AKRTTILLFINHRSVESSAVRRAIEQTYSNFLPKGGHPFTYLDLEI 270

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           +P++VDVNVHP K  + F N   I + I  +IQ+ +     S + ++   +     Q   
Sbjct: 271 EPQRVDVNVHPTKREVNFLNEDEIFSSICTAIQQQLATVDSSRTFMVQTLLPVGRSQSTV 330

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
             + +     +  N        EN L   D+  
Sbjct: 331 EGSSMNDKPPTSRNLSGTKRPYENNLVRTDVTM 363


>gi|315040135|ref|XP_003169445.1| hypothetical protein MGYG_08349 [Arthroderma gypseum CBS 118893]
 gi|311346135|gb|EFR05338.1| hypothetical protein MGYG_08349 [Arthroderma gypseum CBS 118893]
          Length = 741

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 160/398 (40%), Gaps = 35/398 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E  +  I +   +  PS  +KEL++N+LDA ++ V   I+       Q+ DNG
Sbjct: 1   MTIVALGESTVRAIGSTSALPDPSSVVKELLDNALDAGATSVLVEISVNTLDIIQLKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+   +   A +R+ TSKI   +D   +   T GFRG+AL SI  +S+ + +++R P+ 
Sbjct: 61  SGILPSDRSFACKRNYTSKIQTKEDLCRVGGKTLGFRGQALASIAEMSNSVCIITRVPEE 120

Query: 116 NTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
                          S  P +   GT V V D    +P R     K+       I  +++
Sbjct: 121 QVAKTVKFGRDGTPLSDTPTSHPVGTTVCVCDFLKPLPVRRQEVEKTSAKCILTIKKLLQ 180

Query: 174 RMAIAYPKVSFTFSTIK-SNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL-------- 224
           R  IA P+   +   +K  ++  +   STN +  + IS+VIG   +++ +          
Sbjct: 181 RYVIARPRTRLSLRLLKSRDKDWIYAPSTNPSVCDAISKVIGSAVVSSCISNNSVYPILG 240

Query: 225 ---------NEKSNEITLQGYTGIPTFNRGNA---NQFYVFINGRTVQD-----KFILST 267
                    N  +  I +      P             +V I+GR +       + ++  
Sbjct: 241 EESGSDSVVNHNTPIIHMSVIVPKPFAECVPNINYKGQFVVIDGRPLLTSRGFGREVVKL 300

Query: 268 IRTAYAETI--PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
            ++ Y +T+  P    P + L L   P   D+++ P+K  I F +   + + I ++ +  
Sbjct: 301 FKSCYKQTMDRPKLEDPFLFLSLSCPPGIYDISIEPSKDDILFEDHQAVLHVIERAFKDI 360

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
              + ++  S    +     +Q     +     +    
Sbjct: 361 YKPETLTVISNPDTRQGRPGNQSVVGISSPGSTSNGSN 398


>gi|254253155|ref|ZP_04946473.1| DNA mismatch repair enzyme [Burkholderia dolosa AUO158]
 gi|124895764|gb|EAY69644.1| DNA mismatch repair enzyme [Burkholderia dolosa AUO158]
          Length = 170

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 95/168 (56%)

Query: 427 VIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK 486
           +IVD HAAHER+++E+ +       +  Q LL P  +     E   + E  E L  LG  
Sbjct: 1   MIVDMHAAHERILYEQFKNALADRSVAVQPLLLPVSMTATPVEIGTVEEERETLESLGFD 60

Query: 487 AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
                P  +AIR +PA+L   ++  L R ++ ++     +  L +R   +L T+AC+ ++
Sbjct: 61  LAVLSPTTLAIRAVPALLKDADLQSLARAVLADLHAFGGSRVLTERQHELLGTLACHHAV 120

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           R+ R++   EMN LLR+ME    + QCNHGRPT+ +L L+D+++LF R
Sbjct: 121 RANRRLTLDEMNALLRQMEATERADQCNHGRPTWYQLTLNDLDRLFMR 168


>gi|300865542|ref|ZP_07110324.1| DNA mismatch repair protein (fragment) [Oscillatoria sp. PCC 6506]
 gi|300336456|emb|CBN55474.1| DNA mismatch repair protein (fragment) [Oscillatoria sp. PCC 6506]
          Length = 320

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 156/353 (44%), Gaps = 47/353 (13%)

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
            +R  A+   V +NGR V+   +  TI TA+  T P  RYP+  +  +IDP Q+D N HP
Sbjct: 5   CHRRRADWVKVAVNGRIVRSPELEQTILTAFGRTCPRDRYPICFIHFQIDPEQIDWNRHP 64

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           AK+ I   N T  +  I  +I +A+       ++ +  +M          K   PK    
Sbjct: 65  AKAEIYLHNMTYWQEQIGVAIARALQL-----NAEIMPEMPLPERVGKLLKASEPKSGYH 119

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           +  + +     E   S++DL   +                       A AQ+H  YI+++
Sbjct: 120 VNRSIQPNADGEPGKSSSDLGLME---------------------LRAIAQVHNTYILAE 158

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
              G+ +V+QH AHER+++E++   +    +    +L             L     ++L 
Sbjct: 159 HPSGMWLVEQHIAHERVLYEQLCYAWQLVPLEPPVIL-----------NQLSPTQVDNLQ 207

Query: 482 RLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
           RLG++ E FG    A R  PA+L+K++      D  D + + S    LQ      +AT A
Sbjct: 208 RLGLEIEPFGEQLWAARSAPALLAKRD------DCQDALTEISKVGDLQTAQ---VAT-A 257

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  +IR+G  +   EM  LL   +   N   C HGRP F+ L+ S + + F R
Sbjct: 258 CRSAIRNGTALTLQEMQTLLDRWKSTRNPRTCPHGRPIFLSLEESALARFFRR 310


>gi|114615151|ref|XP_001144370.1| PREDICTED: similar to Chain A, N-Terminal 40kda Fragment Of Nhpms2
           Complexed With Adp [Pan troglodytes]
          Length = 352

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 186 IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 245

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H T KI +  D + + TFGF+GEAL S+ A+S +T+ +       G +
Sbjct: 246 VEEENFEGLTLKHHTCKIQEFADLTEVETFGFQGEALSSLCALSDVTISTCHASAKVGTR 305

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +    + KI    P     GT V V+ LF  +P R    +  
Sbjct: 306 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSALPVRHKEFQRN 347


>gi|322698004|gb|EFY89778.1| DNA mismatch repair protein, putative [Metarhizium acridum CQMa
           102]
          Length = 883

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 149/383 (38%), Gaps = 35/383 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  + +   I  P   +KEL++N+LD+ ++ VE  ++        + DNG
Sbjct: 1   MAIHPLPQSTVRLLGSSMNITAPYDLVKELLDNALDSRATAVEITVSSNTIDRISVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIH----TFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  ++     +R  TSK+ +    I     T GFRGEAL S  ++++++++++ P + 
Sbjct: 61  SGIDIDDFSALGRRAHTSKLREYSELIKLGGTTLGFRGEALASANSIANISIITKRPGDP 120

Query: 117 TGAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
              +I +      +   RPV+   GT V V  LF  +P R  +  K  +     I  ++R
Sbjct: 121 IAWRIELVPGTGGVQDKRPVSSTIGTTVAVTRLFENLPPRRQYALKQAKNCIAQIQQLLR 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSN--- 229
           +   A P +  +   I  ++    +     +   E I Q++G + + N +E+ E+ +   
Sbjct: 181 KYVFARPNIKMSLKIIGDSKPLWTYSPKPPDLKREAILQILGANGMVNCIEVYEEVDINR 240

Query: 230 ------------EITLQGYTGIPTFNRGNANQF--YVFINGRTVQ----------DKFIL 265
                            GY   P     +      ++ I+ R +                
Sbjct: 241 ESTSQMEAEEAARWVFSGYIQKPYIIPKDFKVQGAHLSIDNRPMSAAWHVAKKMASILKS 300

Query: 266 STIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
              R+   ++        + + +   P   D N+   K  +       + +      ++A
Sbjct: 301 HISRSTAPKSAERHGGVFLQINIRCPPCSYDPNITMKKDELLIFEEKGLLDGFELVCKRA 360

Query: 326 INKKGISTSSVLSKKMISSFHQD 348
             K   + +++     +S+   D
Sbjct: 361 YEKHSRALAAIHPPATLSTQPHD 383


>gi|145250979|ref|XP_001397003.1| DNA mismatch repair protein [Aspergillus niger CBS 513.88]
 gi|134082530|emb|CAK42446.1| unnamed protein product [Aspergillus niger]
          Length = 848

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 28/338 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L    +  I +  +I  P   +KEL++N+LDA ++ V   I+       Q+ DNG
Sbjct: 1   MPIAALPLAAVRAIGSASVISDPCSIVKELLDNALDAAATSVLIEISQNTLDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+ S + P   +R  TSKI   +D   I   + GFRGEAL S   VS  +T+ +R    
Sbjct: 61  HGIPSTDHPFVCKRTFTSKIQSVEDLRTIGGKSLGFRGEALASAAEVSRGVTITTRLQHE 120

Query: 116 NTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G+ I  S   ++ S +  +   GT V + DLF  IP R     K        I  +++
Sbjct: 121 PVGSSIRYSRNGELLSTQRASHPVGTSVRIADLFKHIPVRRQTTLKKAAKTVVRIKKLVQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN---FPERISQVIGEDFINNAVELNE---- 226
             AIA P    +   +K+     N+    GN     + + +V+G +  ++ +        
Sbjct: 181 AYAIAQPSKRLSLKVLKAKTETNNWMYAPGNNTSLVDAVLKVVGTEVASSCLVKVWPSEN 240

Query: 227 -KSNEITLQGYTGIP--TFNRGNANQFYVFINGRT-VQDKFILSTIRTAYAETIPLGRY- 281
                  +  +   P     + N    Y+ I+GR     + I   I   Y   I +    
Sbjct: 241 DSDRPFRILAFLPKPESDLTKLNGLGQYISIDGRPLSTTRGIAQDIAKLYKSYIRVVASS 300

Query: 282 ---------PVVVLLLEIDPRQVDVNVHPAKSYIRFRN 310
                    P++ L L+      DVN+ PAK  +   +
Sbjct: 301 KEAAINITDPLLCLHLQCTNASYDVNIEPAKDDVLLED 338


>gi|114618435|ref|XP_001175220.1| PREDICTED: similar to PMS3 [Pan troglodytes]
          Length = 298

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 3/184 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++D+G G
Sbjct: 90  IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDSGCG 149

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H T KI +  D + + TFGF+GEAL S+ A+S +T+ +       G +
Sbjct: 150 IEEENFEGLTLKHHTCKIQEFADLTEVETFGFQGEALSSLCALSDVTISTCHASVKVGTR 209

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +    + KI    P     GT V V+ LF T+P R    +    +              +
Sbjct: 210 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRDCQF 269

Query: 180 PKVS 183
           P+ S
Sbjct: 270 PEAS 273


>gi|115871977|ref|XP_780519.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1782

 Score =  196 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 160/386 (41%), Gaps = 43/386 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS+ + NQ+ +G         ++EL+ NS+DA +S +   +        Q+ DNG 
Sbjct: 8   PIQYLSQDVKNQLRSGIATPSVVQCVEELVVNSIDAGASCIAVRVDLPDCK-VQVVDNGR 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
           G+T +++    +R+ TSK  D  D  NI  +G+RGEAL SI  +S  L + SR   +   
Sbjct: 67  GITKDDMLYVGERYATSKCHDTKDLENISHYGYRGEALASIKEISSVLEISSRARGSEVT 126

Query: 119 AQIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                   K   IS    V  + GT V   ++F+ +P R   L S  +    I   ++ +
Sbjct: 127 YSKLYRHGKDQGISKHSKVRPSGGTTVAAHNVFYNLPVRRKVLCSP-LVYEQICKRLQAI 185

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           ++ +P++S T     +    +   ++  +  +    + G+D  +   E+N       + G
Sbjct: 186 SLIHPQISLTLRNDSTGVKSIQTHNS-SSIVQTFGYLFGKDVADCLKEVNHIRTIFNVSG 244

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI------------------- 276
           + G    +  N +  +V++NGR V    I   I    + ++                   
Sbjct: 245 FIGS--TSFRNKSLQFVYVNGRLVLKTKIHKLINELLSNSLVTKSKGKNQDTALGYTMKS 302

Query: 277 -------------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
                            Y + VL +     + D+ + P+K+ I FR+       + + + 
Sbjct: 303 NAASSTCQPSPGGNQVEYGIFVLNITCPRSEYDITLDPSKTLIEFRDWEGAVTCVHELVT 362

Query: 324 KAINKKGISTSSVLSKKMISSFHQDN 349
             ++++ ++    +++K   +  Q+ 
Sbjct: 363 SFLHREHLTMKLTVTQKGSEAGLQER 388



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 125/398 (31%), Gaps = 56/398 (14%)

Query: 236  YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
            +  +   +RG       F    +++       +     +     ++ +V     +    +
Sbjct: 1211 WYSVYDVSRGMKVFINRFNGNCSMEKPEEGPGMNQEARQISEDTQFSMVTKSDTLAHPHL 1270

Query: 296  DVNVHP------AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQ 347
              +  P       K          + +  + +I  A+ +        S++     S    
Sbjct: 1271 PHSAAPFVTSLRDKKESSHSRDPPVTHATMATIDAAMEESQEEDDELSMVKWGNSSQISG 1330

Query: 348  DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                    P +  S        FL  N       + +        +    +     +   
Sbjct: 1331 KGCATDEAPHFLKSDQAETGCRFLTSNVSEGLSSVDAKFQAMVLSSLNPCQFTKAMFNSI 1390

Query: 408  IACAQIHQNYIISQTTDG-----------LVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                Q+   +I                  L++VDQHAAHER+  E +             
Sbjct: 1391 KVLGQVDTKFIACLVNSDYDKNPAGESNLLILVDQHAAHERIRLEML------------- 1437

Query: 457  LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI------- 509
             +    I L   E  L+  +   + R+GI+    G +A  +  +PA   +K         
Sbjct: 1438 -IQALRIGLSPSELRLLEAYSPKMKRIGIEYTLSGDSA-MVTHLPACFVEKEANELKRGR 1495

Query: 510  --------PQLLRDIIDEI-IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
                      L+++++D I   S    +L   I  IL + AC+G+I+ G  +   E   L
Sbjct: 1496 QTIATSMAETLIKEVLDSIQHQSGAVSSLPKTITRILNSQACHGAIKFGDTLDRDECKTL 1555

Query: 561  LREMEKNPNSSQCNHGRPTFIKL-KLSDI-----EKLF 592
            + ++       QC HGRP  + +     I     EK F
Sbjct: 1556 IGQLSSCDLPFQCAHGRPALMPIFDFKKIKHGVSEKFF 1593


>gi|221483356|gb|EEE21675.1| hypothetical protein TGGT1_069560 [Toxoplasma gondii GT1]
          Length = 597

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 135/329 (41%), Gaps = 31/329 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  +S  +   + + +++       KEL+EN++DA ++ VE     GG +  ++ DNG 
Sbjct: 212 RLHAMSSLVAEAVCSQQVVLGLKSICKELVENAIDAGATTVEVRFVDGGMASVEVRDNGS 271

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G+  ++ PM  +RH TSKI+   D  + + T GFRGEAL S+ A+S + +++R       
Sbjct: 272 GIAPQDFPMLGRRHATSKINKFTDLYSALDTMGFRGEALASLCALSDVEILTRTASEPFA 331

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIP-ARLNFLKSEQVETNLITDVIRRMA 176
            ++      KI    P A   GT V V +LF ++P  R    +  Q         +++ A
Sbjct: 332 TRLRFDHHGKIIHQEPAAREVGTSVTVSNLFASLPLRRRALRQQRQKHLQESLAFLQKFA 391

Query: 177 IAYPK------VSFT---------------FSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
           + +          FT                    S+   +N + T     +    V GE
Sbjct: 392 LLHADDCRILVTDFTPANSSRSAEASSGSQRRNGGSSVTLLNTRGTATRLLDAAVTVYGE 451

Query: 216 DFINNA----VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF-ILSTIRT 270
             +       +   E   E +++     P      +     F+N R V+    +   I  
Sbjct: 452 RQMQQCSQVSLAGAEPGREWSVEALLSRPPLGVRTSALQLFFVNKRVVEFPPLLQKLINK 511

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            Y E      +P+V+    + P  ++VN+
Sbjct: 512 KYREVCSRHCFPIVIAFATVAPHLLEVNL 540


>gi|221507840|gb|EEE33427.1| hypothetical protein TGVEG_061110 [Toxoplasma gondii VEG]
          Length = 541

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 135/329 (41%), Gaps = 31/329 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++  +S  +   + + +++       KEL+EN++DA ++ VE     GG +  ++ DNG 
Sbjct: 213 RLHAMSSLVAEAVCSQQVVLGLKSICKELVENAIDAGATTVEVRFVDGGMASVEVRDNGS 272

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G+  ++ PM  +RH TSKI+   D  + + T GFRGEAL S+ A+S + +++R       
Sbjct: 273 GIAPQDFPMLGRRHATSKINKFTDLYSALDTMGFRGEALASLCALSDVEILTRTASEPFA 332

Query: 119 AQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIP-ARLNFLKSEQVETNLITDVIRRMA 176
            ++      KI    P A   GT V V +LF ++P  R    +  Q         +++ A
Sbjct: 333 TRLRFDHHGKIIHQEPAAREVGTSVTVSNLFASLPLRRRALRQQRQKHLQESLAFLQKFA 392

Query: 177 IAYPK------VSFT---------------FSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
           + +          FT                    S+   +N + T     +    V GE
Sbjct: 393 LLHADDCRILVTDFTPANSSRSAEASSGSQRRNGGSSVTLLNTRGTATRLLDAAVTVYGE 452

Query: 216 DFINNA----VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF-ILSTIRT 270
             +       +   E   E +++     P      +     F+N R V+    +   I  
Sbjct: 453 RQMQQCSQVSLAGAEPGREWSVEALLSRPPLGVRTSALQLFFVNKRVVEFPPLLQKLINK 512

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNV 299
            Y E      +P+V+    + P  ++VN+
Sbjct: 513 KYREVCSRHCFPIVIAFATVAPHLLEVNL 541


>gi|327259325|ref|XP_003214488.1| PREDICTED: DNA mismatch repair protein Mlh3-like [Anolis
           carolinensis]
          Length = 1404

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 82/354 (23%), Positives = 144/354 (40%), Gaps = 30/354 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L E++   + +G  I       +EL+ NS+DA+++ V   +        Q+ DNG G
Sbjct: 2   IKCLPEEVQATLRSGVAISSLGQCAEELVFNSIDAKATCVAVRVDLETFK-VQVVDNGCG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M  E+I     R+ TSK    +D  N+  +GFRGEAL SI  + S L + S+  +  T  
Sbjct: 61  MGREDISKIGNRYFTSKCGSLEDLENLRFYGFRGEALASIANIASILEISSKTRKTATSF 120

Query: 120 QIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K   +S         GT V V +LF+ +P R   + S  +E   +   I  ++
Sbjct: 121 LKMFHNGKGLEVSETEMNRPCAGTTVTVYNLFYNLPVRRKCMNS-SLELERMRHKIEAIS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VSF+     +    +   S   +   R SQ+          E+  KS    + G+
Sbjct: 180 LIHPSVSFSLRNDTACSMVLQL-SKTKDLCSRFSQIYSLSKSQKLREVKYKSGGFEIYGF 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI-------------------RTAYAETIP 277
                    N N  ++++N R +    +   I                    +       
Sbjct: 239 ISTE--GHYNKNIQFLYVNNRLILKTRLHKLIDFLLRKQSTICKTKNGSLQSSPARHRSG 296

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
              Y V V+ ++    + DV + PAK+ I FRN   +   + + I+  + ++ +
Sbjct: 297 SEAYGVFVINVKCQYDEYDVCLEPAKTLIEFRNWAALLTCVEEGIKAFLKQEHL 350



 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 30/210 (14%)

Query: 409  ACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQ--------TLLTP 460
                  +N       + LV+VDQHAAHER+  E++  D    +  +         T+  P
Sbjct: 1166 CLINTDENEEAVLHGNLLVLVDQHAAHERVRLEQLITDSYEKQSETSGRKKLLASTVCPP 1225

Query: 461  EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA---IAIREIPAILSKKNIPQL----- 512
              I++ E    L+    + L  LG++   F  N    I + ++P    ++   +L     
Sbjct: 1226 LEIEITEDHRRLLRCCHKGLEDLGLEL-FFPENQPSQILVGKVPLCFVEREANELRRGRQ 1284

Query: 513  ------LRDIIDEIIDS-----STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
                  +++ I E  +          TL   +  +LA+ AC+G+I+    +   +  RL+
Sbjct: 1285 TVAKNIVQEFIQEQAELLQTTGGAQGTLPLTVLKVLASQACHGAIKFNDNLTFEDCCRLM 1344

Query: 562  REMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
              +       QC HGRP+ + L  +D++ L
Sbjct: 1345 ESLSCCQLPFQCAHGRPSMLPL--ADVDHL 1372


>gi|115951372|ref|XP_001185665.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1628

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 160/386 (41%), Gaps = 43/386 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ LS+ + NQ+ +G         ++EL+ NS+DA +S +   +        Q+ DNG 
Sbjct: 8   PIQYLSQDVKNQLRSGIATPSVVQCVEELVVNSIDAGASCIAVRVDLPDCK-VQVVDNGR 66

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
           G+T +++    +R+ TSK  D  D  NI  +G+RGEAL SI  +S  L + SR   +   
Sbjct: 67  GITKDDMLYVGERYATSKCHDTKDLENISHYGYRGEALASIKEISSVLEISSRARGSEVT 126

Query: 119 AQIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                   K   IS    V  + GT V   ++F+ +P R   L S  +    I   ++ +
Sbjct: 127 YSKLYRHGKDQGISKHSKVRPSGGTTVAAHNVFYNLPVRRKVLCSP-LVYEQICKRLQAI 185

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           ++ +P++S T     +    +   ++  +  +    + G+D  +   E+N       + G
Sbjct: 186 SLIHPQISLTLRNDSTGVKSIQTHNS-SSIVQTFGYLFGKDVADCLKEVNHIRTIFNVSG 244

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI------------------- 276
           + G    +  N +  +V++NGR V    I   I    + ++                   
Sbjct: 245 FIGS--TSFRNKSLQFVYVNGRLVLKTKIHKLINELLSNSLVTKSKGKNQDTALGYTMKS 302

Query: 277 -------------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
                            Y + VL +     + D+ + P+K+ I FR+       + + + 
Sbjct: 303 NAASSTCQPSPGGNQVEYGIFVLNITCPRSEYDITLDPSKTLIEFRDWEGAVTCVHELVT 362

Query: 324 KAINKKGISTSSVLSKKMISSFHQDN 349
             ++++ ++    +++K   +  Q+ 
Sbjct: 363 SFLHREHLTMKLTVTQKGSEAGLQER 388



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 121/383 (31%), Gaps = 50/383 (13%)

Query: 236  YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
            +  +   +RG       F    +++       +     +     ++ +V     +    +
Sbjct: 1211 WYSVYDVSRGMKVFINRFNGNCSMEKPEEGPGMNQEARQISEDTQFSMVTKSDTLAHPHL 1270

Query: 296  DVNVHP------AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQ 347
              +  P       K          + +  + +I  A+ +        S++     S    
Sbjct: 1271 PHSAAPFVTSLRDKKESSHSRDPPVTHATMATIDAAMEESQEEDDELSMVKWGNSSQISG 1330

Query: 348  DNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLG 407
                    P +  S        FL  N       + +        +    +     +   
Sbjct: 1331 KGCATDEAPHFLKSDQAETGCRFLTSNVSEGLSSVDAKFQAMVLSSLNPCQFTKAMFNSI 1390

Query: 408  IACAQIHQNYIISQTTDG-----------LVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                Q+   +I                  L++VDQHAAHER+  E +             
Sbjct: 1391 KVLGQVDTKFIACLVNSDYDKNPAGESNLLILVDQHAAHERIRLEML------------- 1437

Query: 457  LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI------- 509
             +    I L   E  L+  +   + R+GI+    G +A  +  +PA   +K         
Sbjct: 1438 -IQALRIGLSPSELRLLEAYSPKMKRIGIEYTLSGDSA-MVTHLPACFVEKEANELKRGR 1495

Query: 510  --------PQLLRDIIDEI-IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
                      L+++++D I   S    +L   I  IL + AC+G+I+ G  +   E   L
Sbjct: 1496 QTIATSMAETLIKEVLDSIQHQSGAVSSLPKTITRILNSQACHGAIKFGDTLDRDECKTL 1555

Query: 561  LREMEKNPNSSQCNHGRPTFIKL 583
            + ++       QC HGRP  + +
Sbjct: 1556 IGQLSSCDLPFQCAHGRPALMPI 1578


>gi|301618484|ref|XP_002938646.1| PREDICTED: DNA mismatch repair protein Mlh3-like [Xenopus
           (Silurana) tropicalis]
          Length = 1284

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 147/361 (40%), Gaps = 32/361 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E++ +++ +G  I      ++EL+ NS+DA S+ +   I        Q+ DNG G
Sbjct: 2   IRCLKEEVQHKLRSGVTISSVGQCVEELVLNSIDALSTCIAVRIDLETV-RIQVVDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           +  E++     R+ TSK     D  N+   GFRGEA+ SI  VS  + + S+    +   
Sbjct: 61  LCPEDLDRLGMRYFTSKCHSLNDLENLKFHGFRGEAIASIADVSSIVEISSKCKNTSKTF 120

Query: 120 QIAISGEKISSVRPVAM---NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
              I   K+ SV+       + GT   V +LF+ +P R   +  + VE   I   +  ++
Sbjct: 121 YKLIQNGKLLSVQEANTSRPSAGTTFSVYNLFYNLPVRRKCMD-QTVEFENIRQRVESLS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     +    +   +   +   R  Q+ G        E+  K  E  + GY
Sbjct: 180 LIHPSISFSLK-NDAMHSVVLQLAKTKDVCSRFCQIYGLPRSQKLCEIQHKVREFDMWGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI--------------RTAYAETIPLGR-- 280
                    N    Y+++N R V    +   I                   +T   GR  
Sbjct: 239 IS--CEGHYNKRMQYLYVNNRLVLKTKLHQHIDFLLRKESLICKPKNINVGKTSSPGRSR 296

Query: 281 -----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
                Y + ++ +     + DV   PAK+ I F++   +  F+ + ++  + ++ +    
Sbjct: 297 SCQELYGIFIININCHYSEYDVCFEPAKTLIEFKDWDTVLRFVEEGVKAFLKREKLYVEP 356

Query: 336 V 336
            
Sbjct: 357 P 357



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 82/220 (37%), Gaps = 27/220 (12%)

Query: 391  EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS- 449
            E    V+  +    +               Q  + LV+VDQHAAHER+  E++  D    
Sbjct: 983  EMMHSVKVLQQVDNKFIACLMNTKMKEGSEQDGNLLVLVDQHAAHERVRLEQLIADSYES 1042

Query: 450  --------TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE--RFGPNAIAIRE 499
                     ++    +  P  +++ E +  L+         +G+           + +  
Sbjct: 1043 APEDDSGRRQLKMSVISPPLELNVTEIQYRLLRVLARSSQSIGLSLSFPDTQGPCVLVSA 1102

Query: 500  IPAILSKKNI-----------PQLLRDIIDEIIDS-----STTYTLQDRIENILATMACY 543
            +P    ++               L+++ + E ++          T+   +  +LA+ AC+
Sbjct: 1103 VPVCFVEREANELHRRRSTVAKNLVQEFLQEQVELLQMTRRAGGTIPLTVLKVLASQACH 1162

Query: 544  GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            G+I+   ++   +   L++ + +     QC HGRP  + L
Sbjct: 1163 GAIKFNDQLSLDDCKHLMQCLSRCSLPFQCAHGRPAILPL 1202


>gi|270663205|ref|ZP_06222419.1| DNA mismatch repair protein mutL [Haemophilus influenzae HK1212]
 gi|270316873|gb|EFA28586.1| DNA mismatch repair protein mutL [Haemophilus influenzae HK1212]
          Length = 137

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 59/136 (43%), Positives = 85/136 (62%), Gaps = 3/136 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNI 87
           L+ENSLDA +++++  I  GG +  +I DNG G+  EE+ +A+ RH TSKI+  DD   I
Sbjct: 1   LVENSLDAGANKIQIDIENGGANLIRIRDNGCGIPKEELSLALARHATSKITDLDDLEAI 60

Query: 88  HTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV-RPVAMNPGTIVEVRD 146
            + GFRGEAL SI +VS LTL SR  +     Q+   G  + +  +P +   GT VEV +
Sbjct: 61  LSLGFRGEALASISSVSRLTLTSRTEEQTEAWQVYAQGRDMETTIKPASHPVGTTVEVAN 120

Query: 147 LFFTIPARLNFLKSEQ 162
           LFF  PAR  FL++++
Sbjct: 121 LFFNTPARRKFLRTDK 136


>gi|114614185|ref|XP_001158668.1| PREDICTED: similar to Uroplakin 3B, partial [Pan troglodytes]
          Length = 349

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 183 IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 242

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H T KI +  D + + TFGF+GEAL S+ A+S +T+ +       G +
Sbjct: 243 VEEENFEGLTLKHHTCKIQEFADLTEVETFGFQGEALSSLCALSDVTISTCHASVKVGTR 302

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +    + KI    P     GT V V+ LF T+P R    +  
Sbjct: 303 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 344


>gi|312829691|emb|CBX34533.1| DNA mismatch repair protein mutL. domain protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
          Length = 289

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 114/265 (43%), Gaps = 4/265 (1%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
           + S+++    S ++          K    +    ++ F      S  +        Y + 
Sbjct: 24  SESLITDDESSGYNNTREKDEDYFKKQQEILQEMDQTFDSNEDASVQNYENKASDDYYDV 83

Query: 393 NDPV---EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           ND      +             Q+H  YII+Q   G+ ++DQHAA ER+ +E  R     
Sbjct: 84  NDIKGTKSKDPKRRIPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGE 143

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
                Q LL P      + E  +I ++  +L ++GI  E FG +   +   P    K  +
Sbjct: 144 VTNEVQDLLIPLTFHFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEV 203

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            ++++D+I+ I++      ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +
Sbjct: 204 EEIIKDMIELILEEKKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAED 262

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRP  I     ++EKLF R
Sbjct: 263 PFTCPHGRPIIINFSKYELEKLFKR 287


>gi|887629|emb|CAA61428.1| ORF N2317 [Saccharomyces cerevisiae]
          Length = 256

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 6/220 (2%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           M  I ++++  +++I +G++I   + A+KEL++NS+DA ++++E +    G    + +DN
Sbjct: 32  MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 91

Query: 60  GFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+          +H TSKI+   D + + T GFRGEAL S+  ++ L++++       
Sbjct: 92  GDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSPPKA 151

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMA 176
                     I+S    + N GT V V  LF  +P R   F K+ + +      VI+  A
Sbjct: 152 DKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYA 211

Query: 177 IAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIG 214
           I    + F+   I  K  +  +     N +  + IS V G
Sbjct: 212 IINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFG 251


>gi|123478110|ref|XP_001322219.1| ATPase [Trichomonas vaginalis G3]
 gi|84784020|gb|ABC61975.1| MLH2-like protein 1 [Trichomonas vaginalis]
 gi|121905061|gb|EAY09996.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 462

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 180/452 (39%), Gaps = 33/452 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
             L +  IN +++ ++I     A+KELIENSLDA +  ++ ++   G    ++TD+G G+
Sbjct: 2   HHLDQGSINLLSSQQVITSVFDAVKELIENSLDAGAKTIKILMEDIGLRKIEVTDDGSGI 61

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG-A 119
           T          H TSKIS  +D +N + TFGFRGEA+ SI  +  +++ +R    ++   
Sbjct: 62  TPNGRDDVALPHTTSKISTIEDLNNELSTFGFRGEAIHSICCLGDVSITTRCKGEDSALT 121

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            +      I S +    N GT V V++L   +P R+   +  +    ++  ++ R  ++ 
Sbjct: 122 MVFNHDGTIKSRKKSTANVGTTVCVQNLLDGLPVRIRDER-AKFNPEILKGLLSRYYLSA 180

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG- 238
           P+V F              +    N  + +S   G +  +     N ++    ++     
Sbjct: 181 PQVRFIVDCPPHFTVT---RPPLTNLQQAVSLEFGVNVSSQLSSRNSETFIGDVRVKLQA 237

Query: 239 ---------IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP--LGRYPVVVLL 287
                           N+ +  + +NGR V+   +   I   + +       R+P  V+ 
Sbjct: 238 LVPDQKSDWKTVSTNRNSARQILIVNGRPVRSAAVEKVINENFWKVFGTIPKRFPRFVIC 297

Query: 288 LE------IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           L+      I    +DVN   AK  I F     I  FI +S+    N +   +    +   
Sbjct: 298 LDFFRDQNITSSLIDVNRDAAKYGIAFSEEQSILKFIEKSLSLDTNHEKEVSQKTSTISK 357

Query: 342 ISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
             S     +P   L   +T     +   +  ++  S ++         S+ +    ++E 
Sbjct: 358 WPS----KSPSISLEDESTQYNIEKFGTYKWKHINSFDEFPLFFVEGQSDKHILAVKTEG 413

Query: 402 THYQLGI---ACAQIHQNYIISQTTDGLVIVD 430
              Q G+     A+I    +I    D ++  D
Sbjct: 414 LFEQCGVATPEIARIPPEELIVMYWDKIIEFD 445


>gi|332025002|gb|EGI65189.1| 60S ribosomal protein L5 [Acromyrmex echinatior]
          Length = 995

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 83/412 (20%), Positives = 165/412 (40%), Gaps = 52/412 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-------------- 46
           M I  L  K +  I   +II      +KELIEN++DA++  +E  +              
Sbjct: 1   MPILALDVKTVKLITTTQIITSVYAVVKELIENAIDADADNIEINLVRQPIYYNIVYLYI 60

Query: 47  -------------------AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFS 85
                                 G S  ++ DNG+G++ ++ P       TSKI+  +D  
Sbjct: 61  CIMFFKEMYYIHVLLCTFQVDNGTSLIEVKDNGYGISKKDAPYMALPSYTSKIANFEDLD 120

Query: 86  NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEV 144
            + TFGFRGEAL ++ AV+ +T++++  ++N G    ++ + ++ +        GT V+V
Sbjct: 121 ALRTFGFRGEALSAVCAVAEVTIITKTEEDNVGTSYVMNNDGQVVNCESCHRTIGTTVQV 180

Query: 145 RDLFFTIPARLNFLKSEQVETNLIT---DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQST 201
           R+LF  +P R   + + +     I     +++   I  P V   F    +  +    + +
Sbjct: 181 RNLFKQVPVRRQIITNTKKANQTIKLLETLMQCFGICKPNVRIQFRVNNNITFT---KPS 237

Query: 202 NGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR----GNANQFYVFINGR 257
             N  E ++ ++G   ++N   +  K  E TLQ               + +  Y+ +N R
Sbjct: 238 LNNIREAVNHILGRKIMSNMEWIESKDAEFTLQLMLPSKKIQDLSEISHPDLHYILVNNR 297

Query: 258 TVQDKFILST-IRTAYAETIPLGRYPVVVLL-LEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
            V+ K +    +  A  + I         L   EI  + V ++               I 
Sbjct: 298 PVKHKALEKNKVLNAVDKYIRK----FYGLKATEIAEQNVSLDTSVCYEDYASNPNENIA 353

Query: 316 NFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
           +    + +K   ++ +   +++ +K I +   +    +   +   + T+ QE
Sbjct: 354 DTEWPACKKRKIQERVIQENIVKEKSILNNSNECKKSSQNEQQNDNQTHNQE 405


>gi|51094587|gb|EAL23839.1| similar to PMS4 [Homo sapiens]
          Length = 263

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 11/192 (5%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 30  IKPIDRKSVHQICSGPVVPSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 89

Query: 63  MTSEEIP--------MAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRP 112
           +  E           ++  +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +  
Sbjct: 90  VEEENFEGLILTLYSLSALKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCH 149

Query: 113 PQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
                G ++      KI    P     G  V V+ LF T+P      +    +       
Sbjct: 150 VSAKVGTRLVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPF 209

Query: 172 IRRMAIAYPKVS 183
                  +P+ S
Sbjct: 210 AFCRDCQFPEAS 221


>gi|312438322|gb|ADQ77393.1| DNA mismatch repair protein HexB family protein [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 289

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 4/265 (1%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
           + S+++    S ++          K    +    ++ F   +  S  +        Y + 
Sbjct: 24  SESLIADDESSGYNNTREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDV 83

Query: 393 NDPV---EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
           ND      +             Q+H  YII+Q   G+ ++DQHAA ER+ +E  R     
Sbjct: 84  NDIKGTKSKDPKRRIPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGE 143

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
                Q LL P      + E  +I ++  +L ++GI  E FG +   +   P    K  +
Sbjct: 144 VTNEIQDLLIPLTFHFSKDEQLVIDQYKNELQQVGIMLEHFGGHDYIVSSYPVWFPKDEV 203

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPN 569
            ++++D+I+ I++      ++   E++   M+C  SI++   +Q  EM+ L+ ++ +  +
Sbjct: 204 EEIIKDMIELILEEKKVD-IKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREAED 262

Query: 570 SSQCNHGRPTFIKLKLSDIEKLFGR 594
              C HGRP  I     ++EKLF R
Sbjct: 263 PFTCPHGRPIIINFSKYELEKLFKR 287


>gi|327350690|gb|EGE79547.1| DNA mismatch repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 923

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/557 (17%), Positives = 177/557 (31%), Gaps = 69/557 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L       + +   I  P   +KELI+NSLDA ++ +   ++        + DNG
Sbjct: 1   MSIAHLPPDTARAVRSTSAISDPCSLVKELIDNSLDAGATYISVEVSANTLDTIHVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   +  +  +R CTSK+   DD  NI   T GFRGEAL S       + + ++    
Sbjct: 61  VGIHPNDRHLVCKRSCTSKLQTIDDLKNIGGSTLGFRGEALASAAEMCGSIAITTKVAGE 120

Query: 116 NTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G          + S    A   GT V + +    +P R     KS     N +  V+ 
Sbjct: 121 MVGETLKYDRTGLLVSCTKAAHPTGTAVRISEFLKLVPVRKKIALKSAPKTLNQMKKVLN 180

Query: 174 RMAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
              ++ P++  SF     KS+   +   + N      + +V+G + I+    +     + 
Sbjct: 181 AYVLSRPEIRLSFKILKTKSDSSWVYASTENATVSTAMLRVVGAEAISQCTTITWPQIQG 240

Query: 231 -------------------ITLQGYTGIP--TFNRGNANQFYVFINGRTVQ-DKFILSTI 268
                              I +      P    ++ N    YV I+GR +     +   +
Sbjct: 241 GDDDFLLESLDINESNPSAIRIVATIPKPGSDLSKINHAGQYVSIDGRPMSISNGVGKEL 300

Query: 269 RTAYAETIPLGRY----------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR--- 315
              +   +  G +          P + + L   P   DVNV P+K+ + F +  ++    
Sbjct: 301 VKLFKSYLRSGSHCVGSQTSLVNPFLFMHLHCQPGSYDVNVEPSKNDVVFEDSKLVMSTA 360

Query: 316 -NFIIQSIQKAINKKGISTSSVLSKKMISS-----------------FHQDNAPKTHLPK 357
            N       +  +K     +  L  + +S                    +D     H+P 
Sbjct: 361 ENMFKTVYGEIESKHTHQNNRQLEDQGLSPQVIRSPRSRSASSRRTHEAEDQPLFLHIPS 420

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI---H 414
           +A    ++     +   +   +++  +     +      E +        +    +    
Sbjct: 421 HAVKHCHSIGNALVSSTQGKKDNVSVASSADTTSCPQLAENNPTLSDSSRLTNPWMLAKR 480

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           Q     +        + H        E  R D       +   L     +L         
Sbjct: 481 QYVTPPKKNAQSRNFNSHLLTPAYEDESFRSDSTMVDNCTTNSLPASPANLTPIPMQTPE 540

Query: 475 EHDEDLHRLGIKAERFG 491
                L + G      G
Sbjct: 541 TR---LAKAGHNISPTG 554


>gi|284024290|ref|ZP_06378688.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
           132]
 gi|304381138|ref|ZP_07363791.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|304340121|gb|EFM06062.1| DNA mismatch repair protein HexB [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|329727860|gb|EGG64311.1| putative DNA mismatch repair protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 289

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 1/219 (0%)

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
            +  +    D    ++      +             Q+H  YII+Q   G+ ++DQHAA 
Sbjct: 70  QNYENKASDDYYDVNDIKGTKSKDPKRRIPYMEIVGQVHGTYIIAQNEFGMYMIDQHAAQ 129

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER+ +E  R          Q LL P      + E  +I ++  +L ++GI  E FG +  
Sbjct: 130 ERIKYEYFRDKIGEVTNEVQDLLIPLTFHFSKDEQLVIDQYKNELQQVGIMLEHFGGHDY 189

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +   P    K  + ++++D+I+ I++      ++   E++   M+C  SI++   +Q  
Sbjct: 190 IVSSYPVWFPKDEVEEIIKDMIELILEEKKVD-IKKLREDVAIMMSCKKSIKANHYLQKH 248

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           EM+ L+ ++ +  +   C HGRP  I     ++EKLF R
Sbjct: 249 EMSDLIDQLREAEDPFTCPHGRPIIINFSKYELEKLFKR 287


>gi|13569567|gb|AAK31150.1|AF346621_1 DNA mismatch repair protein MutL [Aphanizomenon flos-aquae TR183]
          Length = 406

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 103/457 (22%), Positives = 187/457 (40%), Gaps = 58/457 (12%)

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            GA    +  ++S V  VA+ PGT+V V +LF    AR   L +   +   + +VI+++A
Sbjct: 3   HGAVAYNNEGEVSQVEVVAIAPGTVVTVNNLFANYEARRQGLPATNQQLKAVQNVIQQIA 62

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P V++         + +    T G    +I   + +  ++            +L   
Sbjct: 63  LCHPHVNYQIWQNDKEWFTICPAPTVGKLIPQILPQVRQGDLHEVNLQIPNLENSSLHLV 122

Query: 237 TGIP-TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
            G+P   +R   +   V INGR ++   +  TI +A+ + +P  RYPV  L L I P Q+
Sbjct: 123 IGLPDRCHRHRPDWVKVAINGRMIKTPELEQTIFSAFHKILPRDRYPVCFLHLTISPEQI 182

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
           + N +PAK+ I     T  +  I ++I K++     +    +    +S+  +    K   
Sbjct: 183 NWNRNPAKTEIYLNELTFWQEQITEAIHKSLRISETNIKESIHTTRVSNLLKVAESKGEY 242

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
                           Q+++ S N                             A AQ+  
Sbjct: 243 ------------NFNSQKSQSSENQT------------------------YLKAIAQLSN 266

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
            YI+++ + G+ +V+QH AHER+++E++   +    + +  ++             L   
Sbjct: 267 TYIVAEHSGGMWLVEQHIAHERVLYEQLCDSWQLVAVETPIII-----------YQLSQA 315

Query: 476 HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
               L  +G+  E FG N  A+R IP +L ++       D  + I++ S    LQ     
Sbjct: 316 QVSQLQCIGLDIEPFGDNLWAVRNIPMMLKQRE------DCAEAILELSWGGDLQTAQVA 369

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           +    AC  +IR+G KM   EM  LL   ++  N   
Sbjct: 370 V----ACRSAIRNGTKMSLPEMQTLLDNWQRTRNPHH 402


>gi|85000941|ref|XP_955189.1| DNA mismatch repair protein [Theileria annulata strain Ankara]
 gi|65303335|emb|CAI75713.1| DNA mismatch repair protein, putative [Theileria annulata]
          Length = 847

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 155/343 (45%), Gaps = 34/343 (9%)

Query: 1   MKIRKLSEKIINQI-AAGEIIERPSIAIKELIENSLDAESSR----------VETVIAGG 49
           M ++ L  +  + I  + ++I   S  I+EL+EN++DA S+           +E  +   
Sbjct: 1   MSLQSLDHQ-HSCISRSFQVINGISCVIRELVENAIDAHSTNIGFFIIFIQFLEIKLYNA 59

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFS-NIHTFGFRGEALPSIGAVSHL 106
           G    ++TDNG G++         +H TSKI   +D   ++ TFGFRGEAL S+  +S++
Sbjct: 60  GVDLIKVTDNGTGISEINFDNLGSKHSTSKIRKFEDLFTSLTTFGFRGEALYSMCNLSNV 119

Query: 107 TLMSRPPQNNTGAQIAISG-EKISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVE 164
            + +R P ++ G  +       I +  P+A N GT V+VR+LF   P R    +K+ + +
Sbjct: 120 EIETRTPNSDNGWLLKFDSLGNIINKSPIASNIGTCVKVRELFGEYPVRRKLLVKNSKSQ 179

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
            +     I++ A+  P +SF F+T+ +N+   N  +T+G+  + I  V+ E F       
Sbjct: 180 ISKSVSQIQQYALINPHISFNFTTVTNNKKFSNIFATSGS-KDEIRGVVEEIF------- 231

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVV 284
                    +G    P   RG     Y +IN R +          +A          P  
Sbjct: 232 ---------EGLVSNPYNERGYREMEYFYINKRPITKVQKFKNAISAIFSHFSSRAKPSF 282

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           +L L ++   VDVN+ P K      +   I     +++ + + 
Sbjct: 283 ILNLTMNCDNVDVNISPDKRSAYIYSEDYIIRTFKENLYEILK 325



 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 38/175 (21%)

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--------------- 487
           +R   N ++I     +             +       L   G                  
Sbjct: 659 LRGLINMSEINRIDTIFNTSKFFKINNVQVAENSMNVLLSNGFDIKVCREKEFLVFNDGD 718

Query: 488 --------ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY------------ 527
                   E+ G   + +  +P IL K        D ++E+                   
Sbjct: 719 VCMSSVLTEKIGRG-VYVNTLPQILGKVLGEDDFIDFLNELSTIDYIENNQQSDYIWGLG 777

Query: 528 --TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
                 +I +ILA+ AC  S+R+G  + + +M  ++++M    +   C HGRP+ 
Sbjct: 778 NIPRPHKIWSILASKACKSSVRAGDGLTNGQMKNIIKKMGTLIHPWNCPHGRPSI 832


>gi|225419751|ref|ZP_03762054.1| hypothetical protein CLOSTASPAR_06089 [Clostridium asparagiforme
           DSM 15981]
 gi|225041618|gb|EEG51864.1| hypothetical protein CLOSTASPAR_06089 [Clostridium asparagiforme
           DSM 15981]
          Length = 413

 Score =  193 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 114/260 (43%), Gaps = 1/260 (0%)

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           S  + +      +    +T  P   +   ++Q++   Q    S      + +     D  
Sbjct: 153 SDAADRPAGVTAESREIETVNPPAVSDSADSQQERVPQAVSQSVETSGSAPNTPEQLDLF 212

Query: 395 PVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITS 454
             +  +           Q+   Y + +    LVI+DQHAAHE++++E   +   + +  +
Sbjct: 213 DTKFLDPKSRLRHKLIGQLFDTYWLVEYDGMLVIIDQHAAHEKILYENTMKSLKTRQYDT 272

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q +  P I+ L   E  L+ ++ +    LG + E FG    A+R +PA L      +LL 
Sbjct: 273 QMVNPPIILTLSMNEELLLKKYMDYFTNLGFEIENFGGREYAVRGVPANLFSIAKRELLI 332

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           ++ID + D +      D I   +A+M+C  +++    M ++E N L+ ++    N   C 
Sbjct: 333 EMIDGLSDDAAVRN-PDIIYEKVASMSCKAAVKGHMSMSAMEANELIDQLLHLDNPYNCP 391

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP  I +   ++EK F R
Sbjct: 392 HGRPVIISMTKYELEKKFKR 411


>gi|322708667|gb|EFZ00244.1| DNA mismatch repair protein, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 899

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 89/524 (16%), Positives = 178/524 (33%), Gaps = 53/524 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L +  +  + +   I  P   +KEL++N+LD++++ VE   +        + DNG
Sbjct: 1   MSIRPLPQSTVRLLGSSMNITTPYDLVKELLDNALDSQATAVEIAASSNTIDRISVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+   +     +R  TSK+ +  +   +   T GFRGEAL S  ++++++++++ P + 
Sbjct: 61  SGIDISDFGALGRRAHTSKLREYSELVEVGGTTLGFRGEALASANSIANVSIITKSPGDP 120

Query: 117 TGAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
              +I +      +   RPV+   GT V V  LF  +P R  +  K  +   + I  ++R
Sbjct: 121 VAWRIELIPGTGGVKDRRPVSSTVGTTVAVTRLFENLPPRKQYALKQAKNCISQIQQLLR 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAVELNEKSNE-- 230
           +   A P V  +   I   +    +     +   E I Q++G + + N +E+ E+ +   
Sbjct: 181 QYVFARPNVKMSLKIIGDTKPLWAYSPKPPDLKREAILQILGANGMVNCIEVYEEVHFNR 240

Query: 231 -------------ITLQGYTGIPTF---NRGNANQFYVFINGRTVQDKFILSTIRTAYAE 274
                            GY   P     +           N        +   + +    
Sbjct: 241 ESISQMETQEPARWVFSGYIQKPYIISKDFKVRGAHLSIDNRPMSAGWHVTKKMTSILKS 300

Query: 275 TIPLGRYP---------VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
            I     P          + + +   PR  D N+   K  +       + +      ++A
Sbjct: 301 HISQTTAPKSAERQCGVFLQINIRCPPRSYDPNITMRKDELLIFEEKGLLDGFELVCKRA 360

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
             K                 +Q  A        +T   N +E        L    +  + 
Sbjct: 361 YEKH----------------NQALAATHPPATASTQPNNARECERQLATELEDEGVSCAS 404

Query: 386 DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQ 445
               S  +D ++ ++A          +I      + T +     D  +  E    +   +
Sbjct: 405 TDKVSGQHDNLDNTQALQNTSRATRPKIQTTMKTTFTVNMGRKEDSDSDEE--NMDMAIE 462

Query: 446 DFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
                   S         +    +   I  + + L + G K   
Sbjct: 463 VEIPAGPPSVRDSHTNNQEQHPRQTKTIRHYFQSLPKDGFKISH 506


>gi|261205958|ref|XP_002627716.1| DNA mismatch repair protein [Ajellomyces dermatitidis SLH14081]
 gi|239592775|gb|EEQ75356.1| DNA mismatch repair protein [Ajellomyces dermatitidis SLH14081]
          Length = 923

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/557 (16%), Positives = 178/557 (31%), Gaps = 69/557 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L       + +   I  P   +KELI+NSLDA ++ +   ++        + DNG
Sbjct: 1   MSIAHLPPDTARAVRSTSAISDPCSLVKELIDNSLDAGATYISVEVSANTLDTIHVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   +  +  +R CTSK+   DD  NI   T GFRGEAL S       + + ++    
Sbjct: 61  VGIHPNDRHLVCKRSCTSKLQTIDDLKNIGGSTLGFRGEALASAAEMCGSIAITTKVAGE 120

Query: 116 NTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G          + S    A   GT V + +    +P R     KS     N +  V+ 
Sbjct: 121 MVGETLKYDRTGLLVSCTKAAHPTGTAVRISEFLKLVPVRKQIALKSAPKTLNQMKKVLN 180

Query: 174 RMAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE- 230
              ++ P++  SF     KS+   +   + N      + +V+G +  +    +     + 
Sbjct: 181 AYVLSRPEIRLSFKILKTKSDSSWVYASTENATVSTAMLRVVGAEATSQCTTITWPQIQG 240

Query: 231 -------------------ITLQGYTGIP--TFNRGNANQFYVFINGRTVQ-DKFILSTI 268
                              I +      P    ++ N    YV I+GR +     +   +
Sbjct: 241 GDDDFLPESLDINESNPSAIRIVATIPKPGSDLSKINHAGQYVSIDGRPMSISNGVGKEL 300

Query: 269 RTAYAETIPLGRY----------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTI----- 313
              +   +  G +          P + + L   P   DVNV P+K+ + F +  +     
Sbjct: 301 VKLFKSYLRSGSHCVGSQTSLVNPFLFMHLHCQPGSYDVNVEPSKNDVVFEDSKLAMSTA 360

Query: 314 ------IRNFI----IQSIQKAINKKGISTSSV------LSKKMISSFHQDNAPKTHLPK 357
                 +   I         + +  +G+S   +       +    +   +D     H+P 
Sbjct: 361 ENLFKTVYGEIESKHTHQNNRQLEDQGLSPQVIRSPRSRSASSRRTHEAKDPPLFLHIPS 420

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI---H 414
           +A    ++     +   +   +++  +     +      E +        +    +    
Sbjct: 421 HAVKHCHSIGNALVSSTQGKKDNVSVASSADTTSCPQLAENNPTLSDSSRLTNPWMLAKR 480

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
           Q     +        + H        E  R D    +  +   L     +L         
Sbjct: 481 QYVTPPKKNAQSRNFNSHLLTPAYEDESFRSDSTMVENCTTNSLPASPANLTPIPMQTPE 540

Query: 475 EHDEDLHRLGIKAERFG 491
                L + G      G
Sbjct: 541 TR---LAKAGHNISPTG 554


>gi|226479068|emb|CAX73029.1| PMS1 protein homolog 2 [Schistosoma japonicum]
          Length = 302

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 20/233 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR------------VETVIAGGG 50
           I +L + ++++I +G+++   + A+KEL+ENS+DA+S++            +E  + G G
Sbjct: 11  ISRLDKNLVHKICSGQVVVTLASAVKELLENSIDAKSTKIGFPTFLVDVLIIEIRLRGHG 70

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTL 108
               ++ DNG G+  E+      ++CTSK++  DD S + T+GFRGEAL S+  ++ +T+
Sbjct: 71  SESIEVIDNGVGIGEEDFESLTGKYCTSKLNTFDDLSCVETYGFRGEALSSLCHLAKVTI 130

Query: 109 MSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF---LKSEQVE 164
            +       G ++      +I++ R +A + GT V V  LF+ +P R            E
Sbjct: 131 HTCAFDAKIGTKLEFDSSGRITNRRSLARSQGTTVCVNQLFYDLPVRRRHLTDPNRLSKE 190

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGE 215
              +  ++    +    V  + S +      +N  S     +  + I+ V G 
Sbjct: 191 FAKVISLLTAYCLVCVGVQISCSRVGKKGELINVISNGPSISLKDNIAAVFGH 243


>gi|269861340|ref|XP_002650381.1| DNA mismatch repair enzyme (predicted ATPase) [Enterocytozoon
           bieneusi H348]
 gi|220066184|gb|EED43679.1| DNA mismatch repair enzyme (predicted ATPase) [Enterocytozoon
           bieneusi H348]
          Length = 536

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 157/372 (42%), Gaps = 39/372 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL +KII +IAAGE+I   S  +KEL+EN++DA+++ +   +     +   I+D G G
Sbjct: 5   ITKLPDKIIKKIAAGEVITCLSNIVKELLENAIDAKATSIIIQLEKAQLT---ISDTGSG 61

Query: 63  MTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +   +  +  + HCTSK+S+ +F +I T+GFRGEAL SI   S + + ++   ++ G  +
Sbjct: 62  ILESDFDLLCEPHCTSKLSNHNFIDIQTYGFRGEALYSISMCSDIYIETKTQNDDLGWGL 121

Query: 122 AISGEKISSVRP-VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             S  K+           GT+V ++++F     +   L +  ++     + IR     Y 
Sbjct: 122 MYSNGKLQKKTRIAVAKVGTMVNIQNIFKNNFIKKYELTNSNMQYKNTIETIRAYQTVYY 181

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
                                     + I     + F           N+   + +    
Sbjct: 182 NK------------------IQIILNDDIIDYQSDPFKKYYSLGGTYINDNNYKIFIS-- 221

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
                  N F +FINGR V+D  +   +       +         + +E+   ++D+N+H
Sbjct: 222 --EDIKKNTFILFINGRLVRDNILKKHVFKIIENKM---------IFIELQNVEIDINIH 270

Query: 301 PAKSYIRFRNPTIIRNFIIQ---SIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           P+K+ +   N   I   I+      Q  I +  I T+   +K+ I+S  + N  + +   
Sbjct: 271 PSKAEVMLNNKEAIIEKILHLLRQYQHNITQSKIITTVNNNKENITSLDKSNPTRVYNKI 330

Query: 358 YATSLTNTQEKL 369
           Y      T E +
Sbjct: 331 YTEPAVRTLEDI 342


>gi|67522214|ref|XP_659168.1| hypothetical protein AN1564.2 [Aspergillus nidulans FGSC A4]
 gi|40745115|gb|EAA64271.1| hypothetical protein AN1564.2 [Aspergillus nidulans FGSC A4]
 gi|259486892|tpe|CBF85120.1| TPA: DNA mismatch repair protein, putative (AFU_orthologue;
           AFUA_8G05820) [Aspergillus nidulans FGSC A4]
          Length = 867

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/412 (20%), Positives = 154/412 (37%), Gaps = 34/412 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L    +  I +  II  P    KEL++N+LDA ++ V   I+       Q+ DNG
Sbjct: 1   MPIVALPPATVRAIGSTSIISDPYSLAKELLDNALDAFATLVSVEISQDTVGLLQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+ +++  +  +R  TSKI   +D   +   + GFRGEAL S   +S  L + +R   +
Sbjct: 61  HGIPADDYMVVCKRTFTSKIHTVEDLQKVGGKSLGFRGEALASAAELSGALNISTRVETD 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
             G+        +++    ++   GT V + +LF  IP R    +K+ +     I  +++
Sbjct: 121 PVGSSLEYGRNGELTRTERISHPVGTTVRILNLFQQIPVRRQTAIKNSKKTLLKIKKMVQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQST---NGNFPERISQVIGEDFINNAVELNE---- 226
             A+A P +  +F  +K+    +N+      NG   E   +V G     N +  N     
Sbjct: 181 AYAMARPSIRLSFKVLKAKNESLNWMYAPGENGTLTEAALRVGGTGIAPNCILKNWPTPS 240

Query: 227 -----KSNEITLQGYTGIP----TFNRGNANQFYVFINGRTVQD-KFILSTIRTAYAETI 276
                   ++  +    +P       + N    Y+ ++ R +   +     I   +   +
Sbjct: 241 KDGNASPEDLGFRLVALLPKVGSDITKFNNLGQYISVDNRPLSSGRGFAQDITKLFRRYL 300

Query: 277 ----------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
                     P    P + + +       D N+ P+K  + F N   + + +   ++   
Sbjct: 301 RSAASRDGLSPPINDPFLCVHVLCLGGAYDANIEPSKDDVLFENQQAVLSLVEDLLRDTY 360

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                      S        Q N  +  L K   S   +   L       S+
Sbjct: 361 GDLSNVHEDHGSTGQGRGTSQRNGFEALLSKKQQSAALSTPALDSSPQERSS 412


>gi|1304120|dbj|BAA07510.1| PMS5 [Homo sapiens]
 gi|1407578|dbj|BAA07472.1| hPMS5 [Homo sapiens]
          Length = 186

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 9   IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 68

Query: 63  MTSEEIP---MAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           +  E      ++  +H T KI +  D + + TFGF+GEAL S+ A+S +T+ +       
Sbjct: 69  VEEENFEGLTLSALKHHTCKIQEFADLTEVETFGFQGEALSSLCALSDVTISTCHASVKV 128

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
           G ++    + KI    P      T V V+ LF T+P R    +  
Sbjct: 129 GTRLVFDHDGKIIQETPYPPPQRTTVSVKQLFSTLPVRHKEFQRN 173


>gi|258545149|ref|ZP_05705383.1| DNA mismatch repair protein MutL [Cardiobacterium hominis ATCC
           15826]
 gi|258519574|gb|EEV88433.1| DNA mismatch repair protein MutL [Cardiobacterium hominis ATCC
           15826]
          Length = 311

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/278 (26%), Positives = 129/278 (46%), Gaps = 15/278 (5%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           +  S    + +      ++        + Q+ AP    P  +TS                
Sbjct: 46  LRYSGDYRLERPTTPRRALAESAAYYQWAQNIAPSPVHPGGSTSTNPIPSPSPTGRGEQD 105

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                 +DD T               + LG A  QIH  +I++Q   GLVIVD HAAHER
Sbjct: 106 YAAAPVNDDQT--------------EHPLGYALGQIHNIFILAQNARGLVIVDMHAAHER 151

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA-IA 496
           +++E+++    +     Q LL P+ +         + +H + LHRLG   E     + I 
Sbjct: 152 ILYERLKAQLRARHPEVQRLLLPQSLAATPAHLDTLAQHRDWLHRLGFDLEASADESRIH 211

Query: 497 IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIE 556
           I  +P++L    + +++ D++ E+ +   +  ++   + IL+ ++C+ ++R+   +   E
Sbjct: 212 INAVPSLLKHAAVAEIVGDLLHELGEYPASIAIERLQDEILSRLSCHKAVRAHDSLTIPE 271

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           MN LLR++E  P S QCNHGRPT+++L   ++ K F R
Sbjct: 272 MNHLLRDIETTPASGQCNHGRPTWVQLTTDELGKYFMR 309


>gi|294654739|ref|XP_002770025.1| DEHA2A10868p [Debaryomyces hansenii CBS767]
 gi|199429111|emb|CAR65402.1| DEHA2A10868p [Debaryomyces hansenii]
          Length = 959

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 192/431 (44%), Gaps = 38/431 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ ++   I +I +G++I      +KEL+ENS+DA SS++E +    G    +I D+G
Sbjct: 1   MAIQNINAGDIQRITSGQVIIDLVSIVKELVENSIDASSSKIEVLFKNSGLDSIEIIDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-NT 117
            G+  ++      +HCTSK+S  +  S ++T GFRGEAL S+ +VS+L + +   +N   
Sbjct: 61  IGIGEDDFTSVCLKHCTSKLSTFEQLSEVNTLGFRGEALSSLCSVSNLRITTCTKENYPR 120

Query: 118 GAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRR 174
             ++  +     I+  + +    GT + V  LF  +P R  N  K+ + E N    ++  
Sbjct: 121 ATELKYNAMGVLINKKKVIGGIKGTSILVSSLFHNLPVRQKNLQKNLKREYNKAVSLLIN 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQ-----STNGNFPERISQVIGEDFINNAVELN---- 225
             I  P + FT   I     K N       + +    + +  + G +     + ++    
Sbjct: 181 YIIINPNIRFTVYNINPKTSKKNLIIGTKGTGSSTILDNVVNIFGSNGAYGLIPIDLSVD 240

Query: 226 ---------------EKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTI 268
                           K   +  +GY    +F  G +  ++ Y+FINGR +  K  L TI
Sbjct: 241 DIDVKFRLNRGDFPTHKKLNVQFKGYISNSSFGLGRSSGDRQYLFINGRPIIFKKFLKTI 300

Query: 269 RTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              Y     + ++PVV+L + ID   +D+NV P K  I  +N  +I + +   + K  + 
Sbjct: 301 NEVYKSFNHV-QFPVVILNVIIDTEFLDINVTPDKRVIMIQNEDLINDILRNEVTKFFDT 359

Query: 329 KGIS-----TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLP 383
           +        +S +      SS   ++     + +  +++  T  +  +Q+N + T     
Sbjct: 360 QNTVIPKNKSSGISLSDEKSSVSSNSTQANKVTEVVSNVNETSREAEVQKNLMVTRKREH 419

Query: 384 SDDPTYSEDND 394
           +++ T  E  +
Sbjct: 420 NENETDEEAGE 430



 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 367 EKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTT--D 424
           E     +   S N  + + + T   +         + +       Q +  +I+      +
Sbjct: 722 EASGKSQEDSSRNIAIDNIESTKEAEEKLSYTISKSDFLEMRLIGQFNLGFILVTLNSSN 781

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            L I+DQHA+ E+  FEK+ +        +QTL+ P+ I+L   +  ++M++     + G
Sbjct: 782 NLFIIDQHASDEKYNFEKLTEITT---FQNQTLVIPKTIELNAIDEMIVMDNLSVFKQNG 838

Query: 485 IKAERFGPN----AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT---LQDRIENIL 537
              +    N     I +  +P   +         ++I  I   ++T        +I ++L
Sbjct: 839 FVIQVEEDNPPGKRIKLISLPVSKNVLFDISDFHELIHLINTHNSTSNEGIKCSKIRSLL 898

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL--FG 593
           A  AC  SI  G+ +    M ++L  + K      C HGRPT   L   +++K   F 
Sbjct: 899 AMRACRSSIMIGQHLNRKTMTKILTNLSKLDKPWNCPHGRPTMRHLT--ELQKWSSFK 954


>gi|326469732|gb|EGD93741.1| DNA mismatch repair protein [Trichophyton tonsurans CBS 112818]
          Length = 1038

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 153/427 (35%), Gaps = 49/427 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I                             G    ++ DNG 
Sbjct: 3   TIKPIEARSVHQIQSGQVIVDLY-------------------VRFKNNGLDLIEVQDNGH 43

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++         +H TSK+S   D +++ TFGFRGEAL S+ AVS+LT+++   Q    A
Sbjct: 44  GISPNNYESLALKHYTSKLSTFADLTSLQTFGFRGEALSSLCAVSNLTVVTAEAQQAPRA 103

Query: 120 Q--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    K+ S + VA   GT V + +LF  +P R     K+ + E   +  ++   A
Sbjct: 104 SKLDFEFSGKLKSTQIVAGQKGTTVSIENLFKPLPVRRRELEKNVKREYGKVIALLHAYA 163

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 164 CISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYGAKTLLALMPLDLDLEYEPST 223

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 ++ SN+I + G+   P F   R   ++   F+N R      I       Y    
Sbjct: 224 AAKRFSSQASNKIFVHGHISKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 282

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            L + P +    E+D    DVNV P K  I   +   +   +    + ++ +   +    
Sbjct: 283 NLSQSPFIFANFEMDTSAYDVNVSPDKRTILLHDAGALIESL----KASLTELFENEDQT 338

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           +    ++   Q             S+   Q+K          +  L  DD     D +P 
Sbjct: 339 VPVSQLTFSKQSQLTPKRGQTPPASVDAAQDKPEKPPGNADYSQELGHDDTVERNDREPT 398

Query: 397 EESEATH 403
           +  ++  
Sbjct: 399 QTPQSPM 405



 Score =  123 bits (308), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 45/206 (21%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
             Q  D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++  
Sbjct: 795 AEQEQDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVKPKTLDLTAVEEEVIIDNLA 851

Query: 479 DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL-------------- 513
            L + G   E         G     I  +P     +   +++ +L+              
Sbjct: 852 ALEKNGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFDTRDLEELIVLLSEAPQQSQNNL 910

Query: 514 ----RDIIDEIIDSSTTY------------TLQDRIENILATMACYGSIRSGRKMQSIEM 557
               R+ ++   +                     ++  + A  AC  SI  G+ +   +M
Sbjct: 911 GKRAREELESDAEYIEPSGVASTPFSDYLVPRPSKVRKMFAMRACRSSIMIGKNLTHRQM 970

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
             +++ M        C HGRPT   L
Sbjct: 971 ETVVKHMGTIDKPWNCPHGRPTMRHL 996


>gi|255076207|ref|XP_002501778.1| predicted protein [Micromonas sp. RCC299]
 gi|226517042|gb|ACO63036.1| predicted protein [Micromonas sp. RCC299]
          Length = 781

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 141/361 (39%), Gaps = 39/361 (10%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           R+L   +  ++ +  I+      ++EL+ NS+DA +  V  VI  G      ++D+G GM
Sbjct: 49  RQLPPDLERKLRSSTIVTSVGQLVEELVCNSIDAGAHDVSVVIDTGSTLSVTVSDDGCGM 108

Query: 64  TSEEIPM-AVQRHCTSKISD--DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           + +++ + A  RH TSKI    D   ++ T GFRGEAL SI     L + +R   +    
Sbjct: 109 SVKDVKLVATNRHHTSKIHSISDLGGSLRTLGFRGEALASIAEFCVLQVTTRAAGSFETF 168

Query: 120 QIAISGE--------------------------KISSVRPVAMNPGTIVEVRDLFFTIPA 153
               S                                 R      GTIV  +DLF+T P 
Sbjct: 169 SKICSKVGGLTLFVRTSHHVQNLTSRSPQGQTLSCGPARNQLTKAGTIVACKDLFYTHPV 228

Query: 154 RLN-FLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV 212
           R     ++   +       + R+A+ +P+V F    + +    +            +S  
Sbjct: 229 RRGVIRRNIAKQLEDTRVRLYRLALIHPEVGFLLKDVGARHDVLRALPGRS-LLSILSDA 287

Query: 213 IGEDFINNAVELNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRT 270
            G+   +  + L+    E  L GY    T   +  ++   + ++N R V+   + + +  
Sbjct: 288 FGKFIASKLIPLSNIIGEFRLTGYVTAATSETSLPSSELQFFYVNRRFVRRTLLHNAVSK 347

Query: 271 AY---AETI--PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           A+     ++       P  VL LE  P   D+   P K+ I F +     + +  ++++ 
Sbjct: 348 AFALACASLDSTTHGCPGYVLCLECPPDAYDITFDPEKTLIEFTDWKTPLDLLKSALKQV 407

Query: 326 I 326
            
Sbjct: 408 W 408



 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 101/285 (35%), Gaps = 28/285 (9%)

Query: 319 IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
            +    A+       +S    +M+  F  ++AP    P       +  + L   + R + 
Sbjct: 473 RRRQTFALQSSAYEDASPPICQMVEPF--EDAPALSAPVVEEGGGSITDLLADWKRRRAD 530

Query: 379 NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
            DL   +    +E +  + +      Q G       +  +    +  L+ +DQHAA ER+
Sbjct: 531 RDLNVMETVPVAEISRNLLDDAKVLTQWGK------KFILAMSASGDLLAIDQHAADERI 584

Query: 439 IFEKMR--------------QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           + E++R                  ++ + +  L   +   L   E A++  +   +   G
Sbjct: 585 LLEQLRASLIRSVDHRGKLHTYSPASPMPTTVLGRSQPCLLTASELAILRANSSLVWSWG 644

Query: 485 IKAERFG------PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
            + E            + +  +P +         L + + ++  +  T      +  +LA
Sbjct: 645 WRWEDVANCDGDTDEGVKLTGLPTVEGTMLGADALAEYLRQVSVTGPTSAPPPALHRLLA 704

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           + AC  +I  G  +   E   LL  + +      C HGRPT + L
Sbjct: 705 SKACRSAIMFGDNLGQDECVALLGSLTRTELPLHCAHGRPTSVML 749


>gi|255561427|ref|XP_002521724.1| conserved hypothetical protein [Ricinus communis]
 gi|223539115|gb|EEF40711.1| conserved hypothetical protein [Ricinus communis]
          Length = 1137

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 197/491 (40%), Gaps = 45/491 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L E + N + +G I+   +  ++EL+ NSLDA +S+V   + G G  + ++ D+G 
Sbjct: 3   TIKRLPESVRNSMRSGIILFDLTRVVEELVFNSLDAGASKVWVYV-GAGTCYVKVVDDGC 61

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIH-TFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G++ + + +  QR+ TSK+    D    + +FGFRGEAL SI  VS L ++++      G
Sbjct: 62  GISRDGLVLLGQRYVTSKLHHFADMDAANESFGFRGEALASISDVSLLEIITKARGRPNG 121

Query: 119 AQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRRM 175
            +  + G K     V     + GT V VRDLF+  P R      S +   + +   I R+
Sbjct: 122 YRKVLKGSKCLYLGVNDDRKDVGTTVVVRDLFYNQPVRRKCMQSSLKKVLDSVKKCILRI 181

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A  + KVSF    I+S    +  + ++           G + +N   EL+  +  + L G
Sbjct: 182 AFVHSKVSFKVIDIESEDELLYTRPSSALSLLM--SSFGIEDLNFFHELDVSNGVLKLSG 239

Query: 236 YTGIPTFNRGNANQFY--VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR 293
           Y   P  +     +       N    + K     +             P  +L L     
Sbjct: 240 YISGPCNSLTIKFESLDPWKANSIPQKGKRCRPQVC------------PAYILNLSCPLA 287

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK--------------AINKKGISTSSVLSK 339
             D+   P+K+++ F+    I NFI  S+Q                I    + +S  L  
Sbjct: 288 LYDLTFEPSKTHVEFKEWIPILNFIENSVQYLWTGSMTYGMLSHLCIAVHDLYSSFDLLD 347

Query: 340 KMISSFHQDNAPKTHLPKYAT--SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
             +   ++    K  + K+     L + Q K+  Q +      L  S   +     + + 
Sbjct: 348 ADLIENNEFARDKHEIKKHKPCNYLPSPQFKMLAQNDVADDYFLEDSTQRSSDHVENHIL 407

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           + +  +  + +      ++  + ++++  V +D H   + L   KM +       +S+  
Sbjct: 408 DLDWQNGSIEL------RSLEMDESSEKAVSMDYHKFDDELEVTKMNEKPFLRSCSSRGN 461

Query: 458 LTPEIIDLLEG 468
           L  +       
Sbjct: 462 LPLDGSLFSSE 472



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 138/427 (32%), Gaps = 45/427 (10%)

Query: 206  PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFIL 265
             +  +        ++ + L   +  +   G   +   +RG+ +     +     + +   
Sbjct: 678  KDINTFFSQRCNAHDVLSLEHPNISLPETGCLPLRFHSRGHKSHHDYELRESHFKFQDQE 737

Query: 266  STIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRN-----PTIIRNFIIQ 320
                            P      +   R V +N H         +      T +   +  
Sbjct: 738  QDNFPKERSRRSQSAPPFY----KHKRRFVSLNHHSMIKEGNAHDIHISTETDVSKHLYF 793

Query: 321  SIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL-----------PKYATSLTNTQEKL 369
                A +      S V +++      ++      L           P    SL N     
Sbjct: 794  QPNYAEDLMFCIRSDVKNRQESMMGMKETKEGESLKYLQNTWVDDSPVKDLSLANDLNSF 853

Query: 370  FLQENRLSTNDLLPSDDP--------TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
             L +N  +++ +    D          ++ ++   E       +      Q+   +I   
Sbjct: 854  VLMQNNNTSSKIDYQHDILDISSGFLYFAGNSLVPESLHKNCLEDAKVLQQVDNKFIPIV 913

Query: 422  TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDEDL 480
                L I+DQHAA ER+  E++RQ     +  + T L   + + L E    L+  +   +
Sbjct: 914  ANGTLAIIDQHAADERIRLEELRQKVLCGEARTVTYLDVEKELILPEIGYQLLQNYAAQI 973

Query: 481  HRLGIK---------------AERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
               G                      P  + +  +P IL        L + + ++ D+  
Sbjct: 974  RDWGWICNIQAHSGSFKKNLNILHQEPTVVTLLAVPCILDVNLSDGDLLEFLQQLADTDG 1033

Query: 526  TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-K 584
            + T+   +  +L   AC G+I  G  +   E   ++ E++K     QC HGRPT + L  
Sbjct: 1034 SSTMPQSVLRVLNFKACRGAIMFGDSLLRSECALIVEELKKTSLCFQCAHGRPTTVPLVD 1093

Query: 585  LSDIEKL 591
            L +++K 
Sbjct: 1094 LVELQKQ 1100


>gi|291406751|ref|XP_002719688.1| PREDICTED: mutL homolog 3 isoform 1 [Oryctolagus cuniculus]
          Length = 1421

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 143/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL+ NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELVLNSIDAEATCVAVRV-NMETYQVQVIDNGCG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S ++     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSVDVDKVGNRYFTSKCTSVQDLENPRFYGFRGEALASIADMASTMEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKAYEADLTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDMCSRFCQIYGLRKSQKLREIHFKYKEFELNGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKSGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     Y + V+ ++    + DV + PAK+ I F+N       I + ++  + +
Sbjct: 297 RSTPELYGIYVMNVQCPFCEYDVCMEPAKTLIEFQNWDTPLVCIQEGVKLFLKQ 350



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  +             K+ S T++ P  I + E +  L+  +
Sbjct: 1186 LVLVDQHAAHERIRLEQLLTESYEKQQPQGSGRKKLLSSTIIPPLEITVTEEQRRLLRCY 1245

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             + L  LG          + I + ++P    ++                + + LR+ ++ 
Sbjct: 1246 HKRLEDLGLEFIFPDTSDSLILVGKVPLCFVEREANELRRGRSTVTKSIVEEFLREQVEL 1305

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  + +   TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1306 LQTTGSIQGTLPLTVQKVLASQACHGAIKFNDGLSLEESRRLIEALSCCQLPFQCAHGRP 1365

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1366 SMLPL--ADMDHL 1376


>gi|291406753|ref|XP_002719689.1| PREDICTED: mutL homolog 3 isoform 2 [Oryctolagus cuniculus]
          Length = 1453

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 143/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL+ NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELVLNSIDAEATCVAVRV-NMETYQVQVIDNGCG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S ++     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSVDVDKVGNRYFTSKCTSVQDLENPRFYGFRGEALASIADMASTMEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKAYEADLTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDMCSRFCQIYGLRKSQKLREIHFKYKEFELNGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKSGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     Y + V+ ++    + DV + PAK+ I F+N       I + ++  + +
Sbjct: 297 RSTPELYGIYVMNVQCPFCEYDVCMEPAKTLIEFQNWDTPLVCIQEGVKLFLKQ 350



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  +             K+ S T++ P  I + E +  L+  +
Sbjct: 1218 LVLVDQHAAHERIRLEQLLTESYEKQQPQGSGRKKLLSSTIIPPLEITVTEEQRRLLRCY 1277

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             + L  LG          + I + ++P    ++                + + LR+ ++ 
Sbjct: 1278 HKRLEDLGLEFIFPDTSDSLILVGKVPLCFVEREANELRRGRSTVTKSIVEEFLREQVEL 1337

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  + +   TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1338 LQTTGSIQGTLPLTVQKVLASQACHGAIKFNDGLSLEESRRLIEALSCCQLPFQCAHGRP 1397

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1398 SMLPL--ADMDHL 1408


>gi|310793283|gb|EFQ28744.1| DNA mismatch repair protein MutL [Glomerella graminicola M1.001]
          Length = 230

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L E     + +  ++  P   +KEL+EN++DA ++ +E  I+       Q+ DNG
Sbjct: 1   MPISQLPESTCQLLKSTTVVISPLSLVKELVENAIDANATNIEIGISANTVDKIQVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFS--NIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G++ E+     +R  TSK+    +       T GFRG+AL S+   S LT+ +R  Q++
Sbjct: 61  HGISPEDYHAVGRRSHTSKLRTFKELQYKGGKTLGFRGDALASMNTCSELTITTRTSQDS 120

Query: 117 TGAQIAISG--EKISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIR 173
             A + +    E I+  R  + + GT V+V +LF  +P R    +K  +     I ++++
Sbjct: 121 VAALLVLKNGVEGIADKRLASGSMGTTVDVSNLFAAVPVRRQLAIKESKKSCGQIKELLQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF-PERISQVIGEDFINNAV 222
             A+  P    +    K ++   ++    G    E   QV G D ++  V
Sbjct: 181 TYALTRPYTRLSLKIFKDHKLSWSYAPGQGAHVREAALQVFGPDLVSQCV 230


>gi|302683344|ref|XP_003031353.1| hypothetical protein SCHCODRAFT_16115 [Schizophyllum commune H4-8]
 gi|300105045|gb|EFI96450.1| hypothetical protein SCHCODRAFT_16115 [Schizophyllum commune H4-8]
          Length = 462

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 4/179 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + +  I++I +G+++     A+KEL+ENSLDA ++ +E      G    ++ DNG G
Sbjct: 7   IKAIDKASIHRITSGQVVIDLQTAVKELLENSLDAGATNIEVRFKNHGLKSIEVVDNGSG 66

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           +  ++      +H TSK++  +D + + TFGFRGEAL S+ A+    T+ +         
Sbjct: 67  IAEKDFEGIALKHHTSKLAAFEDLTTVRTFGFRGEALSSLCALCDGFTITTATQGPLGEM 126

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRMAI 177
                  KI     VA   GT V++ ++F  +P R     ++ + E      ++   A+
Sbjct: 127 IEMDRNGKIKKRSKVARQRGTTVQLSNIFTPLPVRRKEFERNAKREFGKALHLLNAYAL 185



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 21/232 (9%)

Query: 375 RLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQT----------TD 424
            L   D +  +  T +  N      +   +       Q ++ +II++            D
Sbjct: 215 SLPPADSISQNPATSTAANALARVIDKADFAKMDVVGQFNRGFIIARRRKQPESGGSSMD 274

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            L IVDQHA+ E+  FE ++    +TKI SQ LL P  ++L   +  +  +H + L + G
Sbjct: 275 DLFIVDQHASDEKYNFETLQ---QTTKIESQRLLRPRPLELTAADEMIARDHLDVLRQNG 331

Query: 485 IKAERFGPN------AIAIREIPAILSKKNIPQLLRDIIDEIIDS-STTYTLQDRIENIL 537
            + E  G         + +   P   S     + L ++I  + D+         +   + 
Sbjct: 332 FEVEDSGAGNDSDGARLRLVAQPVSKSTTFDMRDLEELIHLLQDAPGGAAVRCSKARAMF 391

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLSDI 588
           A+ AC  S+  G  +   +M  +++ M        C HGRPT   L  L+D+
Sbjct: 392 ASRACRKSVMIGMPLTKGQMTAVVQHMGTMDQPWNCPHGRPTMRHLIDLADL 443


>gi|327303696|ref|XP_003236540.1| DNA mismatch repair protein [Trichophyton rubrum CBS 118892]
 gi|326461882|gb|EGD87335.1| DNA mismatch repair protein [Trichophyton rubrum CBS 118892]
          Length = 1038

 Score =  190 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 151/425 (35%), Gaps = 49/425 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I                             G    ++ DNG 
Sbjct: 3   TIKPIEARSVHQIQSGQVIVDLY-------------------VRFKNNGLDLIEVQDNGH 43

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++         +H TSK+S   D +++ TFGFRGEAL S+ AVS+LT+++   Q    A
Sbjct: 44  GISPNNYESLALKHYTSKLSTFADLTSLQTFGFRGEALSSLCAVSNLTVVTAEAQQAPRA 103

Query: 120 Q--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    K+ S + VA   GT V + +LF  +P R     K+ + E   +  ++   A
Sbjct: 104 SKLDFEFSGKLKSTQVVAGQKGTTVSIENLFKPLPVRRRELEKNVKREYGKVIALLHAYA 163

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 164 CISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYGAKTLLALMPLDLGLEYEPST 223

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 ++ SN+I + G+   P F   R   ++   F+N R      I       Y    
Sbjct: 224 AAKRFSSQASNKIFVHGHISKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 282

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            L + P +    E+D    DVNV P K  I   +   +   +    + ++ +   +    
Sbjct: 283 NLSQSPFIFANFEMDTSAYDVNVSPDKRTILLHDAGALIESL----KASLTELFENEDQT 338

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           +    ++   Q             S+   Q+K          +  L  DD       +P 
Sbjct: 339 VPVSQLTFSKQSQLTSKRGQTPPASVDAIQDKPEEPPGNAVYSQELGQDDIVEENGPEPT 398

Query: 397 EESEA 401
           +   +
Sbjct: 399 QTPPS 403



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 45/206 (21%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
             Q  D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++  
Sbjct: 795 AEQVQDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVKPKTLDLTAVEEEVIIDNLA 851

Query: 479 DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL-------------- 513
            L + G   E         G     I  +P     +   +++ +L+              
Sbjct: 852 ALEKNGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFDTRDLEELIVLLSEAPQQSQSNL 910

Query: 514 ----RDIIDEIIDSSTTY------------TLQDRIENILATMACYGSIRSGRKMQSIEM 557
               RD +D   +                     ++  + A  AC  SI  G+ +   +M
Sbjct: 911 GKRARDELDSDAEHIEPSGVASSPFSDYLVPRPSKVRKMFAMRACRSSIMIGKNLTHRQM 970

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
             +++ M        C HGRPT   L
Sbjct: 971 ETVVKHMGTIDKPWNCPHGRPTMRHL 996


>gi|308161091|gb|EFO63551.1| Pms1-like protein [Giardia lamblia P15]
          Length = 726

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/699 (15%), Positives = 220/699 (31%), Gaps = 124/699 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR L       I A +    P   I  L+ENSLDA +S +  V+   G     + DNG 
Sbjct: 13  RIRSLPASDSRLILATQQFPDPHKVISALLENSLDAGASEISIVLESMGIKSITVNDNGC 72

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+   ++P  +Q   + +I+           +GE++  I A+  + + S    +    + 
Sbjct: 73  GL---DLPT-LQALGSCRITTAIPQPGMVNHKGESIFLISALGTVLVTSSLGDDP--YER 126

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE---QVETNLITDVIRRMAIA 178
            IS    ++ +    + GT V V++L+ +IP R  +  +    +     ITD+++  A+A
Sbjct: 127 VISENTSNARQATRASRGTTVVVQNLYKSIPVRQKYFSTPSLRKKLLLSITDLVQSYALA 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED---------FINNAVELNEKSN 229
              + F     ++    ++  +   +  +R  ++ G +         F        + S 
Sbjct: 187 NYTLGFRLIVDETVHIDVSS-APENSIHDRYVELFGREVRSLVGFFSFETRLGYTVKASL 245

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT-------------AYAETI 276
                G T             ++  NG+ +    ++  ++              A    +
Sbjct: 246 ACPDTGITSQTKLGHARK--IFLSTNGKPILCSSLIEALQQTYARTSATNIPIGALNLVL 303

Query: 277 PLGRY------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN-----------FII 319
           P G Y      P   L ++     VD+      +++   N + I +            I+
Sbjct: 304 PPGTYALARSTPYDTLQIQGLNLFVDLLSEEYLAWLLRYNNSTITDRYIERSTTSKSLIV 363

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDN---APKTHLPKYATSLTNTQEKLFLQENRL 376
           ++ +        S SS  ++        DN   +  +H    +   T   E   +  +  
Sbjct: 364 KAAKGKSANSPYSKSSFGARSHQKDAMPDNIIISRVSHTKAASFFHTRASELRQVYHSET 423

Query: 377 STNDLLP--------------------SDDPTYSEDNDPVEESEATHYQLGIACAQI--- 413
           +TN  L                     S+   +   +    E ++   +  +    +   
Sbjct: 424 TTNTELCSGGTPSTLGTIGLSELQTSISNPQPHENLDPIKIEGQSCDSEGKVRIGPVRRR 483

Query: 414 ------------HQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
                       +  YI       L+    +  +             S    +      +
Sbjct: 484 GSTSGFRQQDFANLKYICQYNQSFLIAQLNNVFYLIDQHAAHEAKHFSNYWHNPHCYLSK 543

Query: 462 IIDLLEGECALIMEHDEDLHRL---------GIKAERFGPNAIAIREIPAILSKKNIPQL 512
              +      L  +    L            G +  R   N + I   P++  +    + 
Sbjct: 544 QKTITPLRLILRPDEKLCLEEFLSSVVFDTIGFEL-RMSENHVLISSFPSLFGQTLTEED 602

Query: 513 LRDIIDEI-------------IDSSTTYT------------LQDRIENILATMACYGSIR 547
            R+ +  +              D+ +                  +I  I A+ +C  SIR
Sbjct: 603 FREYLLSLYGYTREYVESICTKDTGSKTRENSLLCLLHNNIAPPKIRKIFASKSCKASIR 662

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            G  +      R++ ++        C HGRP    L L+
Sbjct: 663 LGDPLLDSTAKRVIADLASCEKPFNCPHGRPVLRLLDLA 701


>gi|237708005|ref|ZP_04538486.1| LOW QUALITY PROTEIN: DNA mismatch repair protein mutL [Bacteroides
           sp. 9_1_42FAA]
 gi|229457991|gb|EEO63712.1| LOW QUALITY PROTEIN: DNA mismatch repair protein mutL [Bacteroides
           sp. 9_1_42FAA]
          Length = 377

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 159/378 (42%), Gaps = 33/378 (8%)

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
            +    F+NGR ++  +    I  AY + +P+G      +  E++P  +DVN+HP K+ I
Sbjct: 2   RSPPIFFVNGRYMRHPYFHKAIMDAYEQLVPVGEQVSYFIYFEVNPANIDVNIHPTKTEI 61

Query: 307 RFRNPTIIRNFIIQSIQKAINKKGISTSSVLS------------------KKMISSFHQD 348
           +F N   I   +  ++++ + K     S                      +   ++++ D
Sbjct: 62  KFENEQAIWQILAAAVKETLGKFNAVPSIDFDTEGMPDIPAFDASPYTGIQPPKTTYNPD 121

Query: 349 NAP---KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ 405
             P       P   +  +   E+L+    R +++     D+  Y  +     E     Y 
Sbjct: 122 YNPFNVSAAPPSSYSKPSKDWEQLYAGLERHASSQNFHPDENDYRAEETSPAEENPGLYD 181

Query: 406 L---------GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
                          Q    +I++    GL+I+DQ  AH R++++K     +  +  SQ 
Sbjct: 182 HVEDSSVSEKSGQHYQFKGRFILTSVKSGLMIIDQQRAHIRILYDKYIDQISRRQGISQG 241

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +L P+I+     E A++ E  EDL  LG +    G  + AI  +PA +   N   L++++
Sbjct: 242 MLFPDIVQFPLSEVAILQEIMEDLSFLGFELTDLGGGSYAINGVPAGIEGLNPIDLIQNM 301

Query: 517 IDEIIDSSTTYTLQDRIENILA-TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           +   ++      +++ +++ILA T+A   +I  G+ + + EM  L+  +      +    
Sbjct: 302 VHTAMEKGG--KVKEEVQSILALTLAKATAIVPGQVLTNEEMTGLVDGLFAVATPNYTPD 359

Query: 576 GRPTFIKLKLSDIEKLFG 593
           G+     +   D+EKLF 
Sbjct: 360 GKTVLSVINEDDLEKLFK 377


>gi|326334736|ref|ZP_08200943.1| DNA mismatch repair protein MutL [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325693186|gb|EGD35118.1| DNA mismatch repair protein MutL [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 409

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 168/410 (40%), Gaps = 24/410 (5%)

Query: 204 NFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF 263
           +  +RI QV G       V + E++  + +QG+       + N +  +  +N R +++++
Sbjct: 3   SLRKRIVQVFGSRLNEQLVPVEEQTEVVNIQGFISKN-SPKRNKSLQFFMVNHRFIKNRY 61

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
           +   + +A+   +  G  P   L LEIDP+ +D+N+HP K+ I+F N   I   +  +++
Sbjct: 62  LHHAVVSAFEGLLKEGEQPEYFLYLEIDPKHIDINIHPTKTEIKFDNDHTIYALLRSAVK 121

Query: 324 KAINKKGISTSSVL--------------SKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
            ++ +  +  +                  +  + ++  D        +     +      
Sbjct: 122 HSLGQFQVLPTIDFSLDESQEIPYSYKDKEAKMPTYQVDRNFNPFKMEEKDVSSKRNNPP 181

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEES-------EATHYQLGIACAQIHQNYIISQT 422
           F   +  +            S+ N+ ++E        E              + YII+  
Sbjct: 182 FSFASNRNAPQWEALYTGFPSKVNESLKEEVPLSSLIEVQTETKVQTILYFQKKYIITYL 241

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D ++ +    AH+R+++E+  +  +     SQ+LL P   +    E   +      L+R
Sbjct: 242 KDKVLFIHVSRAHQRILYERFYKSISQGGSISQSLLFPLEFEFSPVEILSLQSLTSSLNR 301

Query: 483 LGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMAC 542
            G   E    N I    +P ++ +  + ++LR ++++ ++      L  + E++   +A 
Sbjct: 302 AGFLLE-IEQNKIRFTGLPPLVKESQVEEILRQLLEKAMEDIPQEEL-SQRESLAKNLAK 359

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
             +I++G+ +   E  +L+ ++     +     G+  +I+   +++E  F
Sbjct: 360 SLAIKAGQSLSPEEQEQLVYDLFSCKETQVSPFGKKIYIEFPFNELENRF 409


>gi|303321187|ref|XP_003070588.1| DNA mismatch repair protein, C-terminal domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110284|gb|EER28443.1| DNA mismatch repair protein, C-terminal domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 806

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 141/342 (41%), Gaps = 25/342 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L     + I +   I  P   ++ELI+N+LDA ++ +   ++        + DNG
Sbjct: 1   MPIAELDRAAAHAIGSASAISDPCSVVRELIDNALDANATIISVELSANLLDSIHVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLT-LMSRPPQN 115
            G+  E+  +  +++CTSKI   DD  ++     GFRG+AL S   +S  T +++R    
Sbjct: 61  LGIPPEDRELICRQNCTSKIKTLDDLKHVGGKLLGFRGQALASTTQMSESTVIITRITAE 120

Query: 116 NTGAQIAI-SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
            T + +       I S   VA   GT V V      +P R   + KS     + I   ++
Sbjct: 121 TTASILEFGRAGDILSKGMVAHPVGTSVRVSGFLKYLPVRRQMVLKSLSKIVSRIKKALQ 180

Query: 174 RMAIAYP--KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
             A++ P  ++S   S  K     +     + +  + IS+VIG +   + +E +   N+ 
Sbjct: 181 NYALSRPCVRLSLKISRQKRGFAWIYAPKQSPSVADAISKVIGAEVAAHCLEQSLTYNDP 240

Query: 232 T----LQGYTGIPTFNRGNA--NQFYVFINGRT-VQDKFILSTIRTAYAETIP--LGR-- 280
                 +G +               ++F++GR     K I   +   Y   I    GR  
Sbjct: 241 NPENSDEGKSTAQVHAVIPKLDAGQFIFVDGRPLSTSKGIAKDLVKIYKSYINRTFGRPC 300

Query: 281 -----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                 P + L L   P   DVNV P+K  + F +   I   
Sbjct: 301 TSAITDPFMYLYLSCPPGIYDVNVDPSKDDVLFADSRSILCL 342


>gi|302925794|ref|XP_003054166.1| hypothetical protein NECHADRAFT_89983 [Nectria haematococca mpVI
           77-13-4]
 gi|256735107|gb|EEU48453.1| hypothetical protein NECHADRAFT_89983 [Nectria haematococca mpVI
           77-13-4]
          Length = 949

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 159/420 (37%), Gaps = 34/420 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L       + +   I  P   +KEL++NS+DA ++ +E           ++ DNG
Sbjct: 1   MSISALPPSTARLLGSSTAIADPLSLVKELVDNSIDAGATSIEITTTSNTVDKIRVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFS--NIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  E+     +R  TSK+   D+       T GFRGEAL S  +++ + + +R  Q+ 
Sbjct: 61  RGIRLEDYDSLGRRAHTSKLRTFDELEFKGGTTLGFRGEALASANSLATIKVSTRTAQDP 120

Query: 117 TGAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
            G+ + +   +  I   +P++   GT V+   LF  IP R     K  +     I  ++ 
Sbjct: 121 VGSLLFLKFGQGGIEKQQPISSTVGTTVQAWKLFDNIPVRKQTALKGSRKTLTNIKKLLE 180

Query: 174 RMAIAYPKVSFTFSTIKS-NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
             A+A P +  +F       +  +       N  E I+QV G   +    E++  +    
Sbjct: 181 GYALALPHLKLSFKVPGDPCQPWLYSPCALMNTREAITQVFGHALVTQLDEISSGTGTDG 240

Query: 233 LQGYTGIPTFNRGN------------ANQFYVFINGRTVQD-----KFILSTIRTAYAET 275
              Y                          ++ ++ R +       K I++  + + + T
Sbjct: 241 PANYLSQEIVLTAFLPSRGSDAKIVKNKGAFISVDSRPISSTTGTGKKIVAIFKASISRT 300

Query: 276 IPLGR------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
           +   +       P + L ++  P   D NV P K  + F++   I +       K    K
Sbjct: 301 LASTKDLRSLPNPFMQLSIKCQPGSYDPNVSPLKDEVLFKDEPAILSCFQALCDKVYRGK 360

Query: 330 GISTSSVLSKKMIS---SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
              T+ V   +         +    +T LP+ + +   + EK      + +T +    +D
Sbjct: 361 DSVTTGVAPGREEQRNVRITRQMQRETSLPQTSVTPRGSGEKPTGVNCQGNTQESSTMND 420


>gi|169602615|ref|XP_001794729.1| hypothetical protein SNOG_04311 [Phaeosphaeria nodorum SN15]
 gi|160706213|gb|EAT88071.2| hypothetical protein SNOG_04311 [Phaeosphaeria nodorum SN15]
          Length = 1030

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 160/435 (36%), Gaps = 33/435 (7%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +G+++  PS  +KELI+N+LDA +  +   I        QI D+G G+ +E+  +  +R+
Sbjct: 3   SGQVLVDPSSLVKELIDNALDARAKSIFVDITANTIDSIQIKDDGHGIPAEDRALVCRRY 62

Query: 76  CTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS 130
           CTSKI    D   +     GFRGEAL S+  +S  L + +R        ++    +    
Sbjct: 63  CTSKIRYFYDLKEVGGKWLGFRGEALSSMAEMSGTLAVTTRVEGEPVAVKLKYGRDGEIE 122

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                        V   F  IP R     K+       I  +++  A+A P V F    +
Sbjct: 123 RG-----------VTQFFEYIPVRRQTATKNAAKCLAKIRRLVQAYALARPAVRFRLHVL 171

Query: 190 KSNRYK---MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
           K+   K   +    TN N  + + +VI +D          +S+   +  +   PT N   
Sbjct: 172 KAKNNKGDFIYAPKTNSNIEDAVLKVISKDCALQCDWTALESDGFEVHAFLPKPTANESK 231

Query: 247 ANQFYVF--INGRTVQD-KFILSTIRTAYAETIPLG-------RYPVVVLLLEIDPRQVD 296
              +  F  I+ R V + +  +  +  A  E +          + P   + +   P   D
Sbjct: 232 IANYGAFISIDSRPVSNSRGTIKQVVAAVKERLRKSSQSLTAAKDPFFCMNIICPPDSYD 291

Query: 297 VNVHPAKSYIRFRNPTIIRNFI---IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKT 353
            N+ PAK  + F +  ++ + +   ++S      +  +       +   S F     P  
Sbjct: 292 PNIEPAKDNVMFEDGKVVLDAVDKLLRSYYPEAMETEVEPPIPGQQHAQSDFEDSWNPMP 351

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
           +      +     +    Q+++                ++   ++      + G   A I
Sbjct: 352 NPVHLEPTAELVGKSKLDQQSKDPRWRSSMYGIDEDDLEHLQEDQPMVIEEEEGRRAADI 411

Query: 414 HQNYIISQTTDGLVI 428
              + +++    +  
Sbjct: 412 SNPWTVARMNSIIKP 426


>gi|302412381|ref|XP_003004023.1| DNA mismatch repair protein mutL [Verticillium albo-atrum VaMs.102]
 gi|261356599|gb|EEY19027.1| DNA mismatch repair protein mutL [Verticillium albo-atrum VaMs.102]
          Length = 651

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 91/439 (20%), Positives = 160/439 (36%), Gaps = 51/439 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L +    Q+ A  ++  PS A+KEL++N+LDA ++ VE +I+       Q+ DNG
Sbjct: 1   MSIARLPDAATRQLCATLVLVSPSSAVKELLDNALDAGATAVEVLISANTLGRIQVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFS--NIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  E+I    +   TSK+   ++       T GFRG AL S   +S + + +R  Q+ 
Sbjct: 61  HGIAPEDIKCVGRPGHTSKLRSFEELQFKGGKTLGFRGNALSSAACISKVVITTRTAQDK 120

Query: 117 TGAQI--AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVIR 173
             +      S       R V+   GT VE+ +L+   P R   F K        I  +++
Sbjct: 121 VASSFILGSSSGDSVVSRTVSAPVGTTVELSNLYSDFPVRRKVFFKEAPKSIASIKTLLQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIGEDFINNAVELNEK----- 227
             A+A P+   TF  +   +   ++      N  E   Q+ G    +  VE         
Sbjct: 181 AYALARPETKLTFKVLGDEKSAWSYAPRERFNPREATLQMFGVSLASQYVERTISTELLD 240

Query: 228 ------------------SNEITLQGYTGIP--TFNRGNANQFYVFINGRTV-QDKFILS 266
                              N I ++     P     +      YV ++ R + +D+ I  
Sbjct: 241 STASTTTPPNKGENDESGPNCIIIRALLPKPDADHAKIAGKGAYVSVDSRPMGRDRGIFK 300

Query: 267 TIRTAYAET-----IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
            +                R   + + ++      D+N+ PAK  + FR+   + + I   
Sbjct: 301 KLVKIINIFFQKASNCTTRDLFLYVDIKCTAGIYDLNISPAKDEVVFRSEQTVLDLINNL 360

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
                          L      S   ++  +T   +Y+  L  +Q+           N  
Sbjct: 361 CL------------ALYTPHEYSGDNESPNQTECSRYSPILVLSQKNTRDWPGASHVNQR 408

Query: 382 LPSDDPTYSEDNDPVEESE 400
            P       E    +E+ E
Sbjct: 409 TPESPLLTDEYEMDLEDHE 427


>gi|255931125|ref|XP_002557119.1| Pc12g02280 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581738|emb|CAP79855.1| Pc12g02280 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 892

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 36/366 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +K I  I +  +I  P   +KELI+N+LDA ++ ++  I+       Q+ D+G
Sbjct: 1   MPIEALPQKTIRAIGSTSVISDPYSVVKELIDNALDASTTSLQIEISQNTLDVIQLKDSG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G++ E+     +R  TSKI   DD  N+   + GFRGEAL S+  +S  L + +R    
Sbjct: 61  HGISPEDQQYVCKRAFTSKIQTLDDLKNVGGSSLGFRGEALASVAGLSGVLAVTTRVKSE 120

Query: 116 NTGAQ-IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G         +++  +  +   GT V + D    IP R     K      + I  +++
Sbjct: 121 VAGRCSKYGRNGELTGTQRTSHPVGTTVRITDFLKHIPVRRQTALKCATKSLSRIKKLVQ 180

Query: 174 RMAIAYPKVSFTFSTIK---SNRYKMNFQSTNGNFPERISQVIGEDFINNA-VELNEKSN 229
             AIA+P   F+   +K    N       + + +  +   +V G +  ++  V+     +
Sbjct: 181 AYAIAHPSKRFSLKVLKAKIENNNWTYAPNADASLSDAALKVAGREVSSSCDVKRLSSQS 240

Query: 230 EITLQGYTGIPTF--------------NRGNANQFYVFINGRTVQD---------KFILS 266
               QG                     ++ N+   Y+ ++GR +           K    
Sbjct: 241 TPGNQGGATDQQDYEAIAFLPNTQSDTSKINSAGQYISVDGRPLSSNRGIGHEIVKIFKQ 300

Query: 267 TIRTAYAETIPLGRY--PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
            +R A +++        P + L +       DVN+ PAK  + F +  ++   +    + 
Sbjct: 301 YVRVAASKSESSKSVSDPFLCLQIRCPRGTYDVNIEPAKDDLLFEDRGVVLALVENLFRD 360

Query: 325 AINKKG 330
              +  
Sbjct: 361 QYGEID 366


>gi|320035938|gb|EFW17878.1| DNA mismatch repair protein mutL [Coccidioides posadasii str.
           Silveira]
          Length = 814

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 142/350 (40%), Gaps = 33/350 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L     + I +   I  P   ++ELI+N+LDA ++ +   ++        + DNG
Sbjct: 1   MPIAELDRAAAHAIGSASAISDPCSVVRELIDNALDANATIISVELSANLLDSIHVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLT-LMSR-PPQ 114
            G+  E+  +  +++CTSKI   DD  ++     GFRG+AL S   +S  T +++R   +
Sbjct: 61  LGIPPEDRELICRQNCTSKIKTLDDLKHVGGKLLGFRGQALASTTQMSESTVIITRITAE 120

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
                        I S   VA   GT V V      +P R   + KS     + I   ++
Sbjct: 121 TTASILGFGRAGDILSKGMVAHPVGTSVRVSGFLKYLPVRRQMVLKSLSKIVSRIKKALQ 180

Query: 174 RMAIAYP--KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
             A++ P  ++S   S  K     +     + +  + IS++IG +   + +E +   N+ 
Sbjct: 181 NYALSRPCVRLSLKISRQKRGFAWIYAPKQSPSVADAISKIIGAEVAAHCLEQSLTYNDP 240

Query: 232 T----------LQGYTGIP----TFNRGNANQFYVFINGRT-VQDKFILSTIRTAYAETI 276
                       Q +  IP      ++      ++F++GR     K I   +   Y   I
Sbjct: 241 NPENSDEGKSTAQVHAVIPKLDADISKLENKGQFIFVDGRPLSTSKGIAKDLVKIYKSYI 300

Query: 277 P--LGR-------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
               GR        P + L L   P   DVNV P+K  + F +   I   
Sbjct: 301 NRTFGRPSTSAITDPFMYLYLSCPPGIYDVNVDPSKDDVLFADSRSILCL 350


>gi|1304125|dbj|BAA07514.1| PMS4 [Homo sapiens]
 gi|1526554|dbj|BAA07471.1| hPMS4 [Homo sapiens]
          Length = 252

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 4/180 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+K+++ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 27  IKPIDRKSVHQICSGPVVLSLSTAVKKIVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 86

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 87  VEEENFEGLTLKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCHVSAKVGTR 146

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPA-RLNFLKSEQVETNLITDVIRRMAIA 178
           +    + KI    P     GT V V+ LF T+P     F ++ + +         R    
Sbjct: 147 LVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQF 206


>gi|225679750|gb|EEH18034.1| DNA mismatch repair protein [Paracoccidioides brasiliensis Pb03]
          Length = 853

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 135/357 (37%), Gaps = 40/357 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  +   ++   P   +KEL++N LDA ++ +   ++       Q+ DNG
Sbjct: 1   MAISALRQDTVRAVRLAQVFSDPYSVVKELVDNGLDAGATSISVELSANTVGIIQVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   +  +  +R CTSK+   DD  N+   T GFRGEAL S       + + ++  + 
Sbjct: 61  TGIHPNDRQLVCKRSCTSKLRTVDDLRNVGGSTLGFRGEALASAAEMCGGILVTTKTDEE 120

Query: 116 NTGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             GA +      +  S    +   GT V V +    +P R     K      + +  ++ 
Sbjct: 121 LVGAALKYDRAGLLISCTKSSHPTGTTVRVSEFLKFVPVRKQTALKCASKTISRLKKMLI 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE------- 226
             A++ P++  +   +          +      + I   +G + ++  V +         
Sbjct: 181 AYALSRPEIRLSLQVLGGKNQSPWIYAPKKTISDAIMTAVGPEVVSQCVIVAWPESQDSE 240

Query: 227 -----------KSNEITLQGYTGIP----TFNRGNANQFYVFINGRTVQ-DKFILSTIRT 270
                      ++N ++++    +P      ++      YV I+ R +     I   I  
Sbjct: 241 ASSSLGHRDDSETNPLSIRLVAVVPGPDADCSKLTRAGQYVSIDRRPMSTSHGIAKEIVK 300

Query: 271 AYAETIPLGR----------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
            +   +  G            P + + L+      D NV P+K+ + F +  ++ + 
Sbjct: 301 LFKSYLRSGSLCNGGLTSPVDPFLFIHLQCPLGSYDANVEPSKNDVLFADSKLVMSL 357


>gi|149566645|ref|XP_001516394.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 973

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 155/396 (39%), Gaps = 34/396 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L E +  ++ +G  I      I+EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRHLPEGVRAKLRSGVAIASLGQCIEELALNSIDAEANCVAVRV-NVETFRVQVVDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  E++  A  R+ TSK    +D  N   +GFRGEAL SI A+++ + + S+        
Sbjct: 61  MGKEDVRRAGDRYFTSKCGSVEDLENPKFYGFRGEALASIAALANAVEVSSKAGGTAKTF 120

Query: 120 QIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
              I   K   +     V  + GT V   +LF+ +P R   + S ++E   I   I  ++
Sbjct: 121 LKLIHAGKALDVCEADSVRPSAGTTVTAYNLFYQLPVRRKGMDS-RLEFERIRRRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VSF+     S    +       +   R  Q+ G        ELN +      +GY
Sbjct: 180 LMHPSVSFSLKNEASGATVLQL-PKAKDVRARFCQIYGLGRAQKLKELNCQGGGFECRGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI----RTAYAETIPLG------------- 279
            G       N N  ++F+NGR V    +   I    R       P G             
Sbjct: 239 VGAE--AHYNRNMQFLFVNGRLVLRTRLHKLIDFLLRKESVICKPKGGPAGRPPSSSHPR 296

Query: 280 ------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
                 R+ V V+ +     + DV + PAK+ I FR+   +   + + ++  + ++ +  
Sbjct: 297 PRSASERHGVYVVNVRCHVGEYDVCMEPAKTLIEFRDWDALLACVEEGVRALLKRERLFV 356

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
            S                   L   A+     +E  
Sbjct: 357 ESSGEDSRGGGEGNGLGFAAALRPAASGRGGGRESF 392


>gi|296811560|ref|XP_002846118.1| PMS1 nirs variant 6 [Arthroderma otae CBS 113480]
 gi|238843506|gb|EEQ33168.1| PMS1 nirs variant 6 [Arthroderma otae CBS 113480]
          Length = 752

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 141/393 (35%), Gaps = 69/393 (17%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E  I  I +   +  PS   KEL++N+LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPIVALGESTIRAIGSASALPDPSSVAKELLDNALDAGATSIFVEISVNTLDIIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+   +  +  +++ TSKI   +D + I   + GFRG+AL SI  +S  + + +R  + 
Sbjct: 61  SGIQPADRSLVCKQNYTSKIQTKEDLNTINGKSLGFRGQALASIAKMSDAVYITTRVIEE 120

Query: 116 NTG-----------------------------AQIAISGEKISSVRPVA----MNPGTIV 142
                                            +  +   +  S            GT V
Sbjct: 121 QAARIIKFGRDGKPIRGIPVSGNVHELLSSQMWKYELPVGQRISYNISDTLASHPVGTTV 180

Query: 143 EVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK-SNRYKMNFQS 200
            V     ++P R     K        I  +++R AIA PK  F+F  +K  +   +   S
Sbjct: 181 RVIGFLKSLPGRRQEAEKKSAKSAFNIKKLLQRYAIARPKTRFSFRLLKSKDNDWVYAPS 240

Query: 201 TNGNFPERISQVIGEDFINNAV------------------ELNEKSNEITLQGYTGIP-- 240
           +  +  + ISQVI    + + +                  E       I +      P  
Sbjct: 241 SEASVRDAISQVISPTVMTSCISRNLSYPIHEERNSPYTEEEVHDVCTIHISTIIPNPSA 300

Query: 241 -TFNRGNANQFYVFINGRTV-QDKFILSTIRTAYAETIPLG-------RYPVVVLLLEID 291
              +  +    YV I+GR +   K     I   +   +            P + L L+  
Sbjct: 301 ECLSNVDYKGQYVVIDGRPILTSKGFGKEISRRFKTRLKQAIDESNVIADPFMFLSLDCP 360

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK 324
           P   D+N+ P+K  + F +  +I   I  +   
Sbjct: 361 PGIYDINIEPSKDDVLFEDHPVILQIIETAFMD 393


>gi|222642049|gb|EEE70181.1| hypothetical protein OsJ_30259 [Oryza sativa Japonica Group]
          Length = 1166

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 145/338 (42%), Gaps = 28/338 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L + + + + +  ++   S  ++EL+ NS+DA +S+++  +      + ++ D+G 
Sbjct: 3   TIKRLPKSVHSSLRSSIVLFDLSRVVEELVYNSIDANASKIDISV-NARACYVKVEDDGC 61

Query: 62  GMTSEEIPMAVQRHCTSKISD---DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G+T +E+ +  +++ TSK  +   D   +  +FG  GEAL S+  +S + + ++      
Sbjct: 62  GITRDELVLVGEKYATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVRTKARGRPN 121

Query: 118 GAQIAISGEKISSVRPVAMNP--GTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRR 174
                I G K S +         GT V VR+LF+  P R      S + E +L+   + R
Sbjct: 122 SYCKIIKGSKCSHLGIDEQREVVGTTVIVRELFYNQPVRRKQMQSSYKRELHLVKKSVLR 181

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+ +P+VS     I+S    +    ++   P  +S ++G++  +   E+        L 
Sbjct: 182 VALIHPQVSLRLFDIESEDELLYTIPSSSPLP-LVSNILGKNVSSCLHEIATSDKHFALS 240

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+   PT                   D F    I     +      YP  +L L      
Sbjct: 241 GHISRPT-------------------DVFCNKEIDVRSKKRQKNEVYPAYLLNLCCPRSS 281

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
            D++  P+++ + F++   +  F  ++I     K    
Sbjct: 282 YDLHFEPSQTIVEFKDWQTVMYFFERTITDYWKKHAPQ 319



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 21/216 (9%)

Query: 397  EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            E  +   ++      Q+ + +I   + + L++VDQHAA ER+  E++R+   S      T
Sbjct: 913  ECIDKNCFEEARVLLQLDKKFIPVISGEVLLLVDQHAADERIRLEELRRKVLSDDGRGIT 972

Query: 457  LL-TPEIIDLLEGECALIMEHDEDLHRLGIKA------ERFGPNAIAIR---------EI 500
             L + E + L E    L  ++ + +   G         E F  N   +R          +
Sbjct: 973  YLDSEEDLVLPETGFQLFQKYMQQIQSWGWIINSTNSCESFKKNMNVLRRQSRRLTLAAV 1032

Query: 501  PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
            P IL      + L D I ++ D+  +  +   +  IL   AC G+I  G  +   E + +
Sbjct: 1033 PCILGVTLTGKDLMDFIQQLDDTDGSSAIPPAVIRILNFKACRGAIMFGDPLLPSECSLI 1092

Query: 561  LREMEKNPNSSQCNHGRPTFIKL----KLS-DIEKL 591
            + E++      QC HGRPT + +     L  ++ +L
Sbjct: 1093 IEELKATSLCFQCAHGRPTTVPIVNVASLRGELARL 1128


>gi|58697600|ref|ZP_00372810.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535895|gb|EAL59672.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 187

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/189 (46%), Positives = 127/189 (67%), Gaps = 4/189 (2%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL- 465
           G A  Q++  YII++  D L+IVDQHAAHERL++E ++     + I  Q LL PE +++ 
Sbjct: 1   GFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---QKSSIKRQKLLLPETVEIK 57

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
            +    +I  + + L  +G   E    N + ++EIPAIL   ++ ++L +IID + +   
Sbjct: 58  NQAGMEMIEIYKDKLFEMGFDIEIKSENKVIVKEIPAILGAIDVKEMLINIIDRLTEIED 117

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
           T  ++D++  ILAT+AC+GSIR+GRKM+  EMN LLR+MEK P S QCNHGRPT+I++KL
Sbjct: 118 TLPVEDKVNKILATIACHGSIRAGRKMRLDEMNELLRQMEKTPYSGQCNHGRPTYIEMKL 177

Query: 586 SDIEKLFGR 594
           SDIEKLF R
Sbjct: 178 SDIEKLFER 186


>gi|218202592|gb|EEC85019.1| hypothetical protein OsI_32312 [Oryza sativa Indica Group]
          Length = 1167

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 144/338 (42%), Gaps = 28/338 (8%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L + + + + +  ++   S  ++EL+ NS+DA +S+++  +      + ++ D+G 
Sbjct: 3   TIKRLPKSVHSSLRSSIVLFDLSRVVEELVYNSIDANASKIDISV-NARACYVKVEDDGC 61

Query: 62  GMTSEEIPMAVQRHCTSKISD---DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G+T +E+ +  +++ TSK  +   D   +  +FG  GEAL S+  +S + + ++      
Sbjct: 62  GITRDELVLVGEKYATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVRTKARGRPN 121

Query: 118 GAQIAISGEKISSVRPVAMNP--GTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRR 174
                I G K S +         GT V VR+LF+  P R      S + E +L+   + R
Sbjct: 122 SYCKIIKGSKCSHLGIDEQREVVGTTVIVRELFYNQPVRRKQMQSSYKRELHLVKKSVLR 181

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+ +P+VS     I+S    +    ++      +S ++G++  +   E+        L 
Sbjct: 182 VALIHPQVSLRLFDIESEDELLYTIPSSSPL-TLVSNILGKNVSSCLHEIATSDKHFALS 240

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+   PT                   D F    I     +      YP  +L L      
Sbjct: 241 GHISRPT-------------------DVFCNKEIDVRSKKRQKNEVYPAYLLNLCCPRSS 281

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
            D++  P+++ + F++   +  F  ++I     K    
Sbjct: 282 YDLHFEPSQTIVEFKDWQTVMYFFERTITDYWKKHAPQ 319



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 21/216 (9%)

Query: 397  EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQT 456
            E  +   ++      Q+ + +I   + + L++VDQHAA ER+  E++R+   S      T
Sbjct: 914  ECIDKNCFEEARVLLQLDKKFIPVISGEVLLLVDQHAADERIRLEELRRKVLSDDGRGIT 973

Query: 457  LL-TPEIIDLLEGECALIMEHDEDLHRLGIKA------ERFGPNAIAIR---------EI 500
             L + E + L E    L  ++ + +   G         E F  N   +R          +
Sbjct: 974  YLDSEEDLVLPETGFQLFQKYMQQIQSWGWIINSTNSCESFKKNMNVLRRQSRRLTLAAV 1033

Query: 501  PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
            P IL      + L D I ++ D+  +  +   +  IL   AC G+I  G  +   E + +
Sbjct: 1034 PCILGVTLTGKDLMDFIQQLDDTDGSSAIPPAVIRILNFKACRGAIMFGDPLLPSECSLI 1093

Query: 561  LREMEKNPNSSQCNHGRPTFIKL----KLS-DIEKL 591
            + E++      QC HGRPT + +     L  ++ +L
Sbjct: 1094 IEELKATSLCFQCAHGRPTTVPIVNVASLRGELARL 1129


>gi|332527056|ref|ZP_08403138.1| DNA mismatch repair protein MutL [Rubrivivax benzoatilyticus JA2]
 gi|332111488|gb|EGJ11471.1| DNA mismatch repair protein MutL [Rubrivivax benzoatilyticus JA2]
          Length = 217

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 112/200 (56%), Gaps = 1/200 (0%)

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK-ITS 454
           + E+    + LG A  Q+   Y++++   GLV+VD HAAHER+++E+++Q  +S   + +
Sbjct: 16  LPEAAPAAHPLGEAIGQVGGVYVLARNAHGLVVVDMHAAHERIVYERLKQAASSAAALPA 75

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P        E A      + L  LG+       + + +R  PA L   ++ +L R
Sbjct: 76  QPLLLPVSFAATAAEVATAEAERDSLLALGLDVAPLSASTLVVRSRPAALPDADVAELAR 135

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
            ++ E   +  +  ++   + +LATMAC+G++R+ R++   EM+ LLR+ME    +  CN
Sbjct: 136 SVLAEFEQTGASRAVERSRDELLATMACHGAVRANRRLTLPEMDALLRQMEATERADTCN 195

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT+ +L + +++ LF R
Sbjct: 196 HGRPTWRQLTMKELDALFLR 215


>gi|324548372|gb|ADY49736.1| DNA mismatch repair protein mutL [Ascaris suum]
          Length = 109

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ + E + N IAAGE++ERP   IKEL+ENS+DA++S++   +   G S   ++DNG G
Sbjct: 4   IKVMDESLANLIAAGEVVERPFSVIKELVENSIDAQASKINIELKDSGISQIIVSDNGIG 63

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHL 106
           +  E+IP+  +RH TSKIS+  D +NI T GFRGEAL SI AVS +
Sbjct: 64  VEKEDIPLMCKRHATSKISNNIDLANITTLGFRGEALASISAVSKV 109


>gi|315050860|ref|XP_003174804.1| DNA mismatch repair protein pms1 [Arthroderma gypseum CBS 118893]
 gi|311340119|gb|EFQ99321.1| DNA mismatch repair protein pms1 [Arthroderma gypseum CBS 118893]
          Length = 1039

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 154/425 (36%), Gaps = 49/425 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I                             G    ++ DNG 
Sbjct: 3   TIKPIEARSVHQIQSGQVIVDLY-------------------VRFKNNGLDLIEVQDNGH 43

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G++         +H TSK+S   D +++ TFGFRGEAL S+ AVS+LT+++   Q    A
Sbjct: 44  GISPNNYESLALKHYTSKLSTFADLTSLQTFGFRGEALSSLCAVSNLTVVTAEAQQAPRA 103

Query: 120 Q--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    ++ S + VA   GT V + +LF  +P R     K+ + E   +  ++   A
Sbjct: 104 SKLDFEFSGRLKSTQVVAGQRGTTVSIENLFKPLPVRRRELEKNVKREYGKVIALLHAYA 163

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 164 CISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYGAKTLLALMPLDLNLEFEPSS 223

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 +  SN++ + G+   P F   R   ++   F+N R      I       Y    
Sbjct: 224 AAKRFSSNVSNKLFVHGHISKPIFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 282

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            L + P +    E+D    DVNV P K  I   +   +   +    + ++ +   +    
Sbjct: 283 NLSQSPFIFANFEMDTSAYDVNVSPDKRTILLHDAGALIESL----KASLTELFENQDQT 338

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPV 396
           +    ++   Q             S   TQ++L       + +  L  +D     D +P 
Sbjct: 339 VPVSQLAFSRQSQLTPKTGKTPLASTNATQDELEEPSANAAYSQELGENDTVQDNDLEPT 398

Query: 397 EESEA 401
            + ++
Sbjct: 399 TKPQS 403



 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 47/203 (23%)

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR 482
            D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++   L +
Sbjct: 800 QDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVKPKTLDLTSVEEEVIIDNLAALEK 856

Query: 483 LGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTTY---- 527
            G   E         G     I  +P     +   +++ +L+  ++ E    S       
Sbjct: 857 NGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFDTRDLEELIV-LLSEAPQQSQNNRGKR 914

Query: 528 ---------------------------TLQDRIENILATMACYGSIRSGRKMQSIEMNRL 560
                                          ++  + A  AC  SI  G+ +   +M  +
Sbjct: 915 SRNELDSDAEDVEPSGIASSPFSDYLVPRPSKVRKMFAMRACRSSIMIGKNLTHRQMETV 974

Query: 561 LREMEKNPNSSQCNHGRPTFIKL 583
           ++ M        C HGRPT   L
Sbjct: 975 VKHMGTIDKPWNCPHGRPTMRHL 997


>gi|47230202|emb|CAG10616.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 145/355 (40%), Gaps = 31/355 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L  ++  ++ +G  I      ++ELI NS+DAE++ V   +        Q+ DNG G
Sbjct: 1   IKCLPTEVQGKLRSGVAIPSLQQCVEELILNSIDAEATCVGVRMDLEAFK-VQVLDNGTG 59

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHL-TLMSRPPQNNTGA 119
           M ++ +     R+ TSK    +D  N+  +GFRGEAL S+ +++ L  + SR   +    
Sbjct: 60  MDADNLERLGNRYHTSKCRRVEDLENLRWYGFRGEALASLVSLATLVEVSSRTKSSLKTY 119

Query: 120 QIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K   +        + GT V + + F  +P R   L+   +E   +   +  ++
Sbjct: 120 VKVFKDGKGMAVFEAENPRPSAGTTVVICNFFHNMPVRRKRLEPV-LEGERVRHRVEAIS 178

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VSFT     +    +       +   R  Q+       N  E+N    + ++ GY
Sbjct: 179 LMHPSVSFTLKNDCTAAM-LVQLPKANSIYHRFVQIHSLSRAQNLGEINFTHQQFSVVGY 237

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---------------- 280
            G            ++++N R +    +   I     +   + +                
Sbjct: 238 VGREGHYNNC--LQFLYVNERLLLKTRVHKLINCLLRKPSSINQKNDSPERSVGSPKHKR 295

Query: 281 ----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
               + V +L ++    + DV + PAK+ I F++   +   + ++++  + ++ +
Sbjct: 296 SQDLHGVYILNIKCCYSEYDVCLEPAKTLIEFKDWDGVMACVEEAVKTFLKRENL 350


>gi|189203485|ref|XP_001938078.1| DNA mismatch repair protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985177|gb|EDU50665.1| DNA mismatch repair protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 729

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 156/408 (38%), Gaps = 29/408 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L      QI +G+++   S  ++ELI+N+LDA +  +   I        Q+ D+G G
Sbjct: 13  IAALPPTTTRQIGSGQVLVDTSPVVQELIDNALDARAKSMFVDITPNTIDPIQVKDDGHG 72

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
           + +E+ P+  +R+CTSKI D  D  N+     GFRGEAL S+  +S  L + +R      
Sbjct: 73  IPAEDRPLVCRRYCTSKIRDFHDLRNVGGKWLGFRGEALSSMAEMSASLDVTTRVEGELV 132

Query: 118 GAQI-AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRRM 175
             +       +++S    +   GT V+V   F  IP R     K+       I  +++  
Sbjct: 133 AVKTKYNRNGELASTVHDSHPVGTTVKVTKFFDYIPVRKQTALKNSSRCLAKIRRLMQAY 192

Query: 176 AIAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           A+A P   F    +    SN   +     N N  +   +V+ ++          +++   
Sbjct: 193 ALARPTTRFRLHVLKAKNSNSDFVYAPKANANIEDAALKVVDKECALQCEWTAMEADGFE 252

Query: 233 LQGYTGIPTFNRGNANQFYVF--INGRT-VQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
           +  +   PT N    +    F  ++GR     +  +  I  A+ E +             
Sbjct: 253 VHAFLPKPTANGLKISGQGAFVSVDGRPLSNSRGTIKQIVMAFKELLRKSN--------- 303

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
                      PAK  + F N  ++   +   +  +   + +   S     M +  H D 
Sbjct: 304 ------SSLAEPAKDDVMFENSEVVLG-VFDRLLTSYYPEAVDNVSEEEPPMSAQQHLDP 356

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           +P+       TS+   +  +   ++   +          Y  D D +E
Sbjct: 357 SPEALQRSDRTSIAAKEYAIQGPDDGPKSRAQPRWRSTMYGIDEDDME 404


>gi|124249062|ref|NP_780546.1| DNA mismatch repair protein Mlh3 [Mus musculus]
 gi|51259774|gb|AAH79861.1| MutL homolog 3 (E coli) [Mus musculus]
          Length = 1411

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 140/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+ +  ++ +G  I      ++EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  ++  + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  +     +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALATHEADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F++   +   I + +++ + +
Sbjct: 297 RSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSWDTVLICIQEGVKRFLKQ 350



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S T++ P  I + E +  L+  +
Sbjct: 1181 LVLVDQHAAHERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSY 1240

Query: 477  DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             + L  LG++        + I + ++P    ++                + +L+R+ ++ 
Sbjct: 1241 HKHLEDLGLELLFPDASDSLILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVEL 1300

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+   ++   E  RL+  +  +    QC HGRP
Sbjct: 1301 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDRLSLEESCRLIEALSLSQLPFQCAHGRP 1360

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1361 SMLPL--ADLDHL 1371


>gi|224166782|ref|XP_002188747.1| PREDICTED: similar to mutL homolog 3, partial [Taeniopygia guttata]
          Length = 1094

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 148/358 (41%), Gaps = 34/358 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E +  ++ +   +      ++EL+ NS+DA+++ V   +        Q+ DNG G
Sbjct: 2   IRRLVEDVRARLRSEVTVNSLGHCVEELVLNSIDAKATCVAIRVDLEAFK-IQVVDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M  E++    +R+ TSK S   D  N+  +GFRGEAL SI  V S + + S+  +     
Sbjct: 61  MGKEDLRAVGKRYFTSKCSSVRDLENLTFYGFRGEALASIANVASVVEISSKTSRTAKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  +   V    +N    GT V V +LF  +P R   +    +E   +   +  ++
Sbjct: 121 MKLFHNGQALEVCEAELNRPSGGTTVTVCNLFHQLPVRRKCMDPV-LEIERVRQKVEAVS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VS +     S    +    T  +   R  Q+ G        E+N KS    + G+
Sbjct: 180 LMHPSVSLSLRNDVSCSMVLQLPKTR-DVYSRFCQIYGLGRSQKLREINHKSGGFEISGF 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT--------AYAETIPLGR-------- 280
                    N N  ++++N R V    +   I            A+++P  R        
Sbjct: 239 ISTE--GHYNKNMQFLYVNRRLVLKTRLHKLIDFLLRKESVICKAKSVPANRQANSSPGR 296

Query: 281 -------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
                  Y + +L +       DV + PAK+ I F+N  ++   I + ++  + ++ +
Sbjct: 297 YRSGPELYGIFILNVTCAHSDYDVCLEPAKTLIEFQNWDVLLTCIEEGVKIFLKREHL 354


>gi|332967579|gb|EGK06724.1| DNA mismatch repair protein HexB [Desmospora sp. 8437]
          Length = 192

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 1/191 (0%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
                   QIH  YII+Q  DG  ++DQHAAHER+ +E+            Q LL P  +
Sbjct: 1   MPDLTPLTQIHGTYIIAQAEDGFYLMDQHAAHERIYYERFYSRMQEGDGRLQALLMPLTV 60

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
           +    E  +I +    L  LG++ E FG  A  +R  P    K +  +LL +++D +   
Sbjct: 61  ECTPAEAEVIRQWVPHLSELGMEMEPFGNTAFLVRSHPVWFPKGSEEELLWEVLDWVK-R 119

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                     ++    MAC  +I++ R ++  EM  L++++        C HGRP  I  
Sbjct: 120 GERVDPARLQDDGAKLMACKAAIKANRHLRREEMESLIQQLRACITPYTCPHGRPILIHF 179

Query: 584 KLSDIEKLFGR 594
              +IEK+F R
Sbjct: 180 STYEIEKMFKR 190


>gi|148670913|gb|EDL02860.1| mCG5531, isoform CRA_b [Mus musculus]
          Length = 1443

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 140/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+ +  ++ +G  I      ++EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  ++  + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  +     +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALATHEADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F++   +   I + +++ + +
Sbjct: 297 RSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSWDTVLICIQEGVKRFLKQ 350



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S T++ P  I + E +  L+  +
Sbjct: 1213 LVLVDQHAAHERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSY 1272

Query: 477  DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             + L  LG++        + I + ++P    ++                + +L+R+ ++ 
Sbjct: 1273 HKHLEDLGLELLFPDASDSLILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVEL 1332

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+   ++   E  RL+  +  +    QC HGRP
Sbjct: 1333 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDRLSLEESCRLIEALSLSQLPFQCAHGRP 1392

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1393 SMLPL--ADLDHL 1403


>gi|294909575|ref|XP_002777799.1| DNA mismatch repair protein PMS1, putative [Perkinsus marinus ATCC
           50983]
 gi|239885761|gb|EER09594.1| DNA mismatch repair protein PMS1, putative [Perkinsus marinus ATCC
           50983]
          Length = 925

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 156/406 (38%), Gaps = 31/406 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L+  +++ I A +++   S  +KEL+ENSLDA +  +   +   G     ++D+G G
Sbjct: 13  ITSLTRDVVDSICAAQVVTSLSQCVKELLENSLDAGARNITVTLVNNGVDMIAVSDDGCG 72

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHT---------FGFRGEALPSIGAVSH--LTLMSR 111
           ++ E        H TSK+  D     T         FGFRGEAL ++  +S+  +T+++R
Sbjct: 73  VSEENWSTLCSWHATSKV--DIVESRTDELRLGYSDFGFRGEALAAMCGLSNGGVTVLTR 130

Query: 112 PPQNNTGAQIAISGEKISSVRPVAMNP----GTIVEVRDLFFTIPAR-LNFLKSEQVETN 166
              + +     +  +K   +           GT V +R LF  +P R   F ++ + +  
Sbjct: 131 TEDSKSETGKVLVYDKTGRLSSSDGEAARGVGTTVTIRGLFRGLPVRLREFERNAKKQVT 190

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN-AVELN 225
               +++  A+    V+F  +    +    N +        ++  +   +  +   + L 
Sbjct: 191 ATVGLMQAYAVIRHDVAFRLTCDGRSLLATNPEDDMETAIRKVCCISAAELASMTRLVLE 250

Query: 226 EKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFI-LSTIRTAYAETIPL---- 278
           ++    +L+G    PT        +  ++++ GR V         I   Y          
Sbjct: 251 DEGGRWSLKGCLSPPTSVLRPGVVHAQWLYVGGRPVDMPTRVSRCINQLYKRFQTTVALE 310

Query: 279 ---GRYPVVVLLLEIDP--RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
              GR  + VL +         DVN    K  +     T + + I +++++  +     T
Sbjct: 311 RKSGRTWLAVLSIVFGEGVDAADVNSSKDKRSVILDFETELCDKITEAVEEEWSSASSQT 370

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
           +  +    +     D   +      + + T  +E+    E +   +
Sbjct: 371 AVQVKTSSLQQRRMDGWLRKEENITSKTSTKREEQWTPGEPQKQQS 416



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 90/239 (37%), Gaps = 36/239 (15%)

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAH 435
           S+ +   +++     +     +     ++      Q ++ +II+      L I+DQHA  
Sbjct: 662 SSQEDSGNEEFDEGTNATFHVKLGKEDFEAMRVIGQFNKGFIITALEGRWLFILDQHACD 721

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA- 494
           E+ IFE +     ++++ SQ ++ P  + L     + I     ++   G +   F  +A 
Sbjct: 722 EKTIFETL---NKTSELKSQPMIVPVRLSLPPPLESCIRGSRREIEACGFRF-NFADDAP 777

Query: 495 ----IAIRE--IPAILS----KKNIPQLLRDIIDEIIDSSTTYT---------------- 528
               + +    + + L     +    +   D+   ++D   T                  
Sbjct: 778 IGSRVQLTSLGVASGLGFERSRPLTKEDFVDLASLLLDRGATGRSDDELPSASLFWSSAL 837

Query: 529 ----LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                  R+ ++LA+ AC  +I  G  +   +M  ++R+M        C HGRPT   L
Sbjct: 838 GHCLRPPRVWSMLASRACRTAIMIGDSLSRKKMEGVVRKMAALNQPWNCPHGRPTMRLL 896


>gi|294909571|ref|XP_002777798.1| DNA mismatch repair protein PMS1, putative [Perkinsus marinus ATCC
           50983]
 gi|239885760|gb|EER09593.1| DNA mismatch repair protein PMS1, putative [Perkinsus marinus ATCC
           50983]
          Length = 871

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 156/406 (38%), Gaps = 31/406 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L+  +++ I A +++   S  +KEL+ENSLDA +  +   +   G     ++D+G G
Sbjct: 13  ITSLTRDVVDSICAAQVVTSLSQCVKELLENSLDAGARNITVTLVNNGVDMIAVSDDGCG 72

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHT---------FGFRGEALPSIGAVSH--LTLMSR 111
           ++ E        H TSK+  D     T         FGFRGEAL ++  +S+  +T+++R
Sbjct: 73  VSEENWSTLCSWHATSKV--DIVESRTDELRLGYSDFGFRGEALAAMCGLSNGGVTVLTR 130

Query: 112 PPQNNTGAQIAISGEKISSVRPVAMNP----GTIVEVRDLFFTIPAR-LNFLKSEQVETN 166
              + +     +  +K   +           GT V +R LF  +P R   F ++ + +  
Sbjct: 131 TEDSKSETGKVLVYDKTGRLSSSDGEAARGVGTTVTIRGLFRGLPVRLREFERNAKKQVT 190

Query: 167 LITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN-AVELN 225
               +++  A+    V+F  +    +    N +        ++  +   +  +   + L 
Sbjct: 191 ATVGLMQAYAVIRHDVAFRLTCDGRSLLATNPEDDMETAIRKVCCISAAELASMTRLVLE 250

Query: 226 EKSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFI-LSTIRTAYAETIPL---- 278
           ++    +L+G    PT        +  ++++ GR V         I   Y          
Sbjct: 251 DEGGRWSLKGCLSPPTSVLRPGVVHAQWLYVGGRPVDMPTRVSRCINQLYKRFQTTVALE 310

Query: 279 ---GRYPVVVLLLEIDP--RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
              GR  + VL +         DVN    K  +     T + + I +++++  +     T
Sbjct: 311 RKSGRTWLAVLSIVFGEGVDAADVNSSKDKRSVILDFETELCDKITEAVEEEWSSASSQT 370

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
           +  +    +     D   +      + + T  +E+    E +   +
Sbjct: 371 AVQVKTSSLQQRRMDGWLRKEENITSKTSTKREEQWTPGEPQKQQS 416



 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAH 435
           S+ +   +++     +     +     ++      Q ++ +II+      L I+DQHA  
Sbjct: 662 SSQEDSGNEEFDEGTNATFHVKLGKEDFEAMRVIGQFNKGFIITALEGRWLFILDQHACD 721

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA- 494
           E+ IFE +     ++++ SQ ++ P  + L     + I     ++   G +   F  +A 
Sbjct: 722 EKTIFETL---NKTSELKSQPMIVPVRLSLPPPLESCIRGSRREIEACGFRF-NFADDAP 777

Query: 495 ----IAIRE--IPAILS----KKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
               + +    + + L     +    +   D+   ++D   T    D   + L
Sbjct: 778 IGSRVQLTSLGVASGLGFERSRPLTKEDFVDLASLLLDRGATGRSDDERRHRL 830


>gi|167949577|ref|ZP_02536651.1| DNA mismatch repair protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 311

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 150/293 (51%), Gaps = 4/293 (1%)

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRF 308
             + ++N R V+DK +   IR A+ + +  GR+P  VL LEIDP +VDVNVHP K  +RF
Sbjct: 1   MQFFYVNNRMVRDKLVTHAIRQAFQDVLYHGRHPAYVLFLEIDPSKVDVNVHPTKHEVRF 60

Query: 309 RNPTIIRNFIIQSIQKAINKK---GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
           R   ++ +F+ + +  A+++    G   S    +  +    ++ A +       T     
Sbjct: 61  REGRLVHDFLFRGLHHALSETRPGGGQPSPEEMQTPLPEAPREPALEQQRLTMDTPSAAA 120

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
               +  + R S+                   E++A    LG A AQ+   YI+++   G
Sbjct: 121 ASTAWRVQERPSSYQASFRAQQPAQSPGPAAGENDA-SQPLGYALAQVGGVYILAENQQG 179

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           LV+VD HAAHER+ +E+ ++ +    +T Q LL P  ++L   E  L   H E L  +GI
Sbjct: 180 LVLVDMHAAHERITYERFKRSYAGQGVTGQPLLVPISLNLSSREVDLAEAHSELLREVGI 239

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILA 538
           +  R G  ++A+R IPA+L   +  QL+RD+I ++++   +  +Q+ I+ +LA
Sbjct: 240 ELSRLGKESLAVRGIPALLQGADAEQLVRDVITDLVEFGESRRVQEEIDKMLA 292


>gi|149025196|gb|EDL81563.1| mutL homolog 3 (E. coli) (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 1233

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 143/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+++  ++ +G  +      ++EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRCLSDEVQAKLRSGLALSSLGQCVEELTLNSIDAEATCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  + S + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPTFYGFRGEALASIADMASAVEISSKKSTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  + R   +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALAAREADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMILQL-PKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEFNGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F+N   +   + + I+K + +
Sbjct: 297 RSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNWDTVLICVQEGIKKFLKQ 350


>gi|157822465|ref|NP_001101513.1| DNA mismatch repair protein Mlh3 [Rattus norvegicus]
 gi|149025195|gb|EDL81562.1| mutL homolog 3 (E. coli) (predicted), isoform CRA_a [Rattus
           norvegicus]
          Length = 1442

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 143/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+++  ++ +G  +      ++EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRCLSDEVQAKLRSGLALSSLGQCVEELTLNSIDAEATCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  + S + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPTFYGFRGEALASIADMASAVEISSKKSTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  + R   +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALAAREADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMILQL-PKTKDICSRFCQIYGLGKSQKLREIHYKYKEFEFNGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F+N   +   + + I+K + +
Sbjct: 297 RSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQNWDTVLICVQEGIKKFLKQ 350



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S T++ P  I + E +  L+  +
Sbjct: 1207 LVLVDQHAAHERVRLEQLITDSYEKQAPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSY 1266

Query: 477  DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             + L  LG++        ++I + ++P    ++                + +L+R+ ++ 
Sbjct: 1267 HKHLEDLGLELLFPDASDSSILVGKVPLCFVEREANELRRGRSPVTKSIVEELIREQLEL 1326

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+   ++   E  RL+  +       QC HGRP
Sbjct: 1327 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDRLSLEESCRLIEALSLCQLPFQCAHGRP 1386

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1387 SMLPL--ADLDHL 1397


>gi|323448291|gb|EGB04191.1| hypothetical protein AURANDRAFT_72554 [Aureococcus anophagefferens]
          Length = 649

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 185/549 (33%), Gaps = 51/549 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGF 61
           I K+      ++++G+++   + A+KEL+EN+LDA ++ +E  I   GG +  +  DNG 
Sbjct: 5   IAKIDTASARKLSSGQVVVDLAGAVKELLENALDAGATSIELRINDDGGGAEIECADNGH 64

Query: 62  G--------------------MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           G                    +   +  +   R  TSK+   ++   + +FGFRGEAL S
Sbjct: 65  GIAHRVESISELRQRSQVKICIAPRDFALVAARSATSKLVNFEELRTVQSFGFRGEALAS 124

Query: 100 IGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNF 157
           +  ++  + +++R   +  GA+++   + I           GT V VR LF   P R   
Sbjct: 125 LRELAGEVLVVTRTSADAVGARLSFQRDGILKSSTPHARSVGTTVTVRGLFDCAPVRRAD 184

Query: 158 -LKSEQVETNLITDVIRRMAIAYPKVSFTFSTI---KSNRYKMNFQSTNGNFPERISQVI 213
             +  +   +     ++  A+         + +    + R          +  E  S + 
Sbjct: 185 LARRWKWHVSRALRTVQAHALVAVGCRLRLTLVSGGGATRRTAIAVQAPRSLRESASALF 244

Query: 214 GEDFINNAVELNE-----KSNEITLQGYTGI------PTFNRGNANQFYVFINGRTVQDK 262
           G  F  +  E++      +   + + G          P    G  ++ ++F+NGR +   
Sbjct: 245 GHAFARSLEEVSFDLRGGEDCSLAVIGLMSRAGGFDAPGPRGGGGDRQFLFVNGRPIDAP 304

Query: 263 FILSTIRTAYAETIPLGR-YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
            +   I   +       R  P  VL + + P  VDVNV P K  +   + T      + +
Sbjct: 305 RVSRCIGDVWRSVEGDRRGRPAFVLDIRVPPSAVDVNVSPDKRDVVLDDETGRGAVPLPA 364

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
               +          L +    SF    +   H+    T  T     L L     S    
Sbjct: 365 TSNLLVAALRIALHDLWEPSRGSFAGGRSLAPHVAPSTTPDTEAPCSLVLPIAVPSCVTS 424

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH------AAH 435
             +     + +   V        Q       + Q   +S        +D +        H
Sbjct: 425 TATATNAPAREAMLVVPPTLRPTQRNSDTIAVAQVIALSPWQAARAHIDWNCAVAPARLH 484

Query: 436 ERLIFEKM--RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHR--LGIKAERFG 491
              +F  +  +        T Q    P                 E L +  LG    R G
Sbjct: 485 ASSVFGTLAVQSRCGHGHRTVQIDRRPGGNVPTAALAKADFSAMEALGQFNLGFLVCRLG 544

Query: 492 PNAIAIREI 500
            +   + + 
Sbjct: 545 DHLFLVDQH 553



 Score = 39.3 bits (90), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
            +    A  Q +  +++ +  D L +VDQHAA E+  +E +   +  T++ +Q LL P  
Sbjct: 524 DFSAMEALGQFNLGFLVCRLGDHLFLVDQHAADEKFRYEAL---WRDTRVDTQPLLAPLS 580

Query: 463 IDLLEGECALIMEHDEDLHRLGIKA 487
           +DL   E   ++E    + R+G + 
Sbjct: 581 LDLGATEELALLERRCTVERVGFRL 605


>gi|26330996|dbj|BAC29228.1| unnamed protein product [Mus musculus]
          Length = 434

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 140/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+ +  ++ +G  I      ++EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  ++  + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  +     +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALATHEADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F++   +   I + +++ + +
Sbjct: 297 RSASELHGIYVINVQCPFCEYDVCIEPAKTLIEFQSWDTVLICIQEGVKRFLKQ 350


>gi|225556781|gb|EEH05069.1| DNA mismatch repair protein mutL [Ajellomyces capsulatus G186AR]
          Length = 909

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 146/445 (32%), Gaps = 59/445 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L    I  + +  ++  P    KELI+NSLDA ++ +   +A       Q+ DNG
Sbjct: 1   MSIAQLPPDTIRAVRSNSVLSDPCALAKELIDNSLDAGATCISVEVAANTLDTIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   + P+  +R CTSK+   DD  NI   T GFRGEAL S      ++ + +R   +
Sbjct: 61  TGIHPNDRPLVCKRSCTSKLRSIDDLENIGGSTLGFRGEALASAAEMCGNIAITTRVSGD 120

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRR 174
                              +   GT V V +    +P R     KS     N +  V+  
Sbjct: 121 ---------------CTKASHPTGTTVRVYEFLRFVPVRKQRALKSASKTLNRMKKVLNA 165

Query: 175 MAIAYPKVSFTF-----STIKSNRYKMNFQSTNGN-----------------FPERISQV 212
             ++ P++  +F         S  Y  N   T                       +I   
Sbjct: 166 YVLSRPEIRLSFKILKSKHDSSWIYASNKHPTVSTAMLRVIGAEAISQCTTITWPQIQDE 225

Query: 213 IGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ--FYVFINGRTV-QDKFILSTIR 269
             +    +          I L      P  +  + N    YV I+ R +     +   + 
Sbjct: 226 RDDSLPGSVERSESIHPVIRLVATIPKPCSDFSSINYAGQYVSIDRRPMSTSNGVAKELA 285

Query: 270 TAYAETIPLGR----------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF-- 317
             +   I  G            P   + L   P   DVNV P K+ + F +  ++ +   
Sbjct: 286 ELFKSHIRSGSLCDSGRTPPVDPFCFIHLHCRPGIYDVNVEPLKNDVLFEDSKLVMSIAG 345

Query: 318 -IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
            I +++   I  +     +   +   SS                     +  LF   +  
Sbjct: 346 NIFKAVYGEIKPRHTHQRNCQIENQPSSSRMIRPLDKRSANNQRDHEVEESPLFRHISSS 405

Query: 377 STNDLLPSDDPTYSEDNDPVEESEA 401
           +T D    +    S      +   A
Sbjct: 406 ATKDCHSIERICASPSEAKKDNMSA 430


>gi|219124294|ref|XP_002182442.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406403|gb|EEC46343.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 337

 Score =  186 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 135/332 (40%), Gaps = 21/332 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR +  + + +I AG+ +   S A+KEL++N+LDA+S  +   +   G    +++D+G G
Sbjct: 5   IRPIDPESVQRIVAGQAVFDLSTALKELVDNALDAKSRTINIRLFNLGIDILEVSDDGMG 64

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNI-HTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           +     P     H TSKI   D+      T GFRGEAL  +  +S +L + +R     T 
Sbjct: 65  VPLASRPYLATPHATSKIRAFDEIYATASTLGFRGEALFCLANLSTNLIVATRTRDEATA 124

Query: 119 AQIAISGE---KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRR 174
            ++    +   +  +V  +    GT V V  L   +P R +  +K  Q +   +  ++  
Sbjct: 125 QKLEFRRDGSLRTDTVTSILKKVGTTVAVVGLMDALPVRRHDLIKGIQTQRRTMLRMLEG 184

Query: 175 MAIAYPKVSFTFSTI-----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
            AI  P V F    +           +     + +  E +S  +G   +     +    +
Sbjct: 185 YAIFSPGVGFRLMDMMDAGRGGESLLLATPQNSSSIEETVSATLGPKVLPFLCPIQVDLS 244

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
            +       +    +   N  Y  INGR V+ K +   +  A+   +   + P   L   
Sbjct: 245 TV-------LEAPTQSPRNSQYFAINGRPVELKQVSRVLNEAWRA-LGCKKRPFCALQFT 296

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
           +   + D+N+ P K  +   +   I   +  +
Sbjct: 297 LPNNEYDINLSPDKRTVMLTHEPQICALVRDA 328


>gi|56416597|ref|YP_153671.1| DNA mismatch repair protein [Anaplasma marginale str. St. Maries]
 gi|56387829|gb|AAV86416.1| DNA mismatch repair protein [Anaplasma marginale str. St. Maries]
          Length = 221

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 80/189 (42%), Positives = 123/189 (65%), Gaps = 1/189 (0%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A  Q+   YI+S+  D ++IVDQHAAHERL +E M++      +  Q LL PE+++L 
Sbjct: 32  GNAVCQLFDRYIVSRAGDHVIIVDQHAAHERLTYEYMKKVTADEGMKRQVLLMPELVELD 91

Query: 467 EGEC-ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
                 L+ E+ E L + G+  E  G   +A+RE+PAIL   ++  ++  I++ I++   
Sbjct: 92  NEYELELLGEYKEKLLKFGLVIEPMGSMVVAVREVPAILGVFDVKAMIAKIVESIVEVGD 151

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              ++++I+++  T+ACY SIRSGR ++  EMN LLR+ME  P+S QCNHGRPT++KL L
Sbjct: 152 ALFMREKIKHVCGTIACYSSIRSGRTLKLEEMNSLLRQMEDTPHSGQCNHGRPTYVKLSL 211

Query: 586 SDIEKLFGR 594
           S+I+KLF R
Sbjct: 212 SEIDKLFER 220


>gi|241152210|ref|XP_002406861.1| DNA mismatch repair protein mlh3, putative [Ixodes scapularis]
 gi|215493958|gb|EEC03599.1| DNA mismatch repair protein mlh3, putative [Ixodes scapularis]
          Length = 354

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 148/358 (41%), Gaps = 26/358 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M++R L   +I+++ +G  I   +  ++E++ NSLDA ++ V   +        Q+ DNG
Sbjct: 1   MELRALPADVISKLRSGVAIVSIAHCMEEVVLNSLDAGATCVAVRL-NLPYHKVQVVDNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            GM+ E++ +  +R+ TSK     D  +   +G+RGEA+ S+  +S  L + SR   ++ 
Sbjct: 60  HGMSREQLSVCGERYSTSKCRTLSDLEHPKFYGYRGEAIASLVEMSGMLQIESRAAGSDE 119

Query: 118 GAQIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
                 +   +  +   +      GT V V D  F +P R + + SE ++      ++  
Sbjct: 120 SHCKIFTRGHMQELSSSSSKRPSVGTTVTVLDFMFNLPVRRSSV-SETIDFEFCLQLLEG 178

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+++P+VSF+     S   +     +     E  SQ+ G+    +         +  +Q
Sbjct: 179 LALSHPEVSFSLRDDISGEIRFQAHKSESVL-ETFSQLFGKQKAASLKHATLNKKKFAIQ 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET------IP---------LG 279
            Y  +           + ++N R +    I         +       +P           
Sbjct: 238 AYLSMEGHT--TRCLQFAYLNKRLLLKTRIHKLFHNVLKKYVLKYQTLPGLPTSPTKLRN 295

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVL 337
           ++P+ V+ ++   +  D+   P K+ + F N   +       +   + +  I + + +
Sbjct: 296 KHPIFVVFVKCLTKTYDITFEPRKTLVEFANWDTVTKAFECLLNGFLREHKIISHNFV 353


>gi|73963659|ref|XP_868128.1| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) isoform 5 [Canis familiaris]
          Length = 1424

 Score =  186 bits (472), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 159/410 (38%), Gaps = 33/410 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++  ++ +G  I      ++EL+ NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IECLSVEVQARLRSGLAICSLGQCVEELVLNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S++I     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEANLTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQV-PKTKDVCSRFCQIYGLGKSQKLREIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI-----------------RTAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKFIDFLLRRESIICKPKNGSSSRQVNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           R     + + V+ ++    + DV + PAK+ I F++   +   I ++++  + K+ +   
Sbjct: 297 RANPELHGIYVINMQCQFCEYDVCMEPAKTLIEFQDWDTVLVCIQEAVKMFLKKEKLFME 356

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                    S   D +  +   +         +++  QE   S +D    
Sbjct: 357 LSGEDIKEFSEDNDFSLFSATLQKHVPSDEKGDQVNFQEACNSISDSYEM 406



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 120/294 (40%), Gaps = 35/294 (11%)

Query: 326  INKKGISTSSVLSKKMISSFHQDNAP-KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
            +++      +V  + + S F +   P     P+ A  +++ Q K  +    +  +++L  
Sbjct: 1093 LHENDTVDDTVGKESLQSLFSEWENPVFARYPEVAVDVSSGQAKSLV----VKIHNVLYP 1148

Query: 385  DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
               T    +   +  +    +                  + LV+VDQHAAHER+  E++ 
Sbjct: 1149 YRFTKEMIHSM-QVLQQVDNKFIACLMSTKTEENGEAGGNLLVLVDQHAAHERVRLEQLI 1207

Query: 445  QDFNST---------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--ERFGPN 493
             D             K+ S T+  P  I + E +  L+  + ++L  LG++        +
Sbjct: 1208 TDSYEKQQPQGSGRKKLLSSTVSPPLKIRVTEEQRRLLRCYHKNLEDLGLEILFPDTNDS 1267

Query: 494  AIAIREIPAILSKKN---------------IPQLLRDIIDEIIDSSTT-YTLQDRIENIL 537
             + + ++P    ++                + + +R+ ++ +  +     TL   ++ +L
Sbjct: 1268 LVLVGKVPLCFIEREANELRRGRSPVTRNIVEEFIREQVELLQTTGGIQRTLPLTVQKVL 1327

Query: 538  ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            A+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1328 ASQACHGAIKFNDGLSREESCRLIEALSWCQLPFQCAHGRPSMLPL--ADIDHL 1379


>gi|154301109|ref|XP_001550968.1| hypothetical protein BC1G_10527 [Botryotinia fuckeliana B05.10]
 gi|150856275|gb|EDN31467.1| hypothetical protein BC1G_10527 [Botryotinia fuckeliana B05.10]
          Length = 869

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 149/403 (36%), Gaps = 14/403 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ LS+  I+ + + +++  P+  IKELI+N+LDA+++ ++ +I+       ++ DNG
Sbjct: 1   MAIKPLSDATIHLLGSSQVLTTPTSLIKELIDNALDAKATSIDILISQNTIDKIEVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  +++    +R  TSK++   +  N+  ++ GFRGEAL S   +  ++++++     
Sbjct: 61  HGIQPDDLDALGRRGHTSKLTTFTELRNLGGNSLGFRGEALASACQLGDVSIITKMDGQA 120

Query: 117 TGAQIA-ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL-ITDVIRR 174
               +   +   I S    +   GT        ++    ++   S  +            
Sbjct: 121 VATCVKLKALGGIQSQSRSSHPTGTTGTKGAWSYSPRPNISIKDSVSLAVGREAALQCSE 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
            ++ +P+             ++   ++  N     S    E F+        K       
Sbjct: 181 ASMIFPEPPPDRENDTPEGAEIPTGASPAN-DVATSHFRLEAFLPRPDAEQGKIGHGQYF 239

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
                P  +     +    I  R ++ +        A  E +   + P + L +      
Sbjct: 240 SVDSRPVASDKGTMKKITIIFKRHLRSRLASG----ASPEKL---KNPFMRLNIVCPKAS 292

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
            D NV PAK  I F N T++   + +  +      G   S V     ++     +     
Sbjct: 293 YDPNVEPAKEDIIFENETLVLEAVEKMFKNFYGDCGTVMSKVARNNTVTQPTGFDILLAR 352

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            P+  +   +T     L   +        S+  T SE    + 
Sbjct: 353 TPQQDSPSPSTVVNASLTPKKTPPASTPNSNSKTMSEVCPNIA 395


>gi|332661126|gb|AEE86526.1| DNA mismatch repair protein MLH3 [Arabidopsis thaliana]
          Length = 1169

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 150/339 (44%), Gaps = 33/339 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I+ L E + + + +G I+   +  ++EL+ NSLDA +++V   +     S  ++ D+
Sbjct: 1   MKTIKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVSCS-VKVVDD 59

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           G G++ +++ +  +R+ TSK   DF+N+     TFGFRGEAL SI  +S L + ++    
Sbjct: 60  GSGVSRDDLVLLGERYATSKFH-DFTNVETASETFGFRGEALASISDISLLEVRTKAIGR 118

Query: 116 NTGAQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVI 172
             G +  + G K     +     + GT V VRDLF++ P R  ++  S +     I   +
Sbjct: 119 PNGYRKVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKCV 178

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            R+A+ +  VSF+   I+S+        ++  F   + +  G + +N+  ++N     + 
Sbjct: 179 FRIALVHSNVSFSVLDIESDEELFQTNPSSSAF-SLLMRDAGTEAVNSLCKVNVTDGMLN 237

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G+      +    +        R   +                    P  +L +    
Sbjct: 238 VSGFE--CADDWKPTDGQQTGRRNRLQSN--------------------PGYILCIACPR 275

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           R  + +  P+K+++ F+    +  FI +       K  I
Sbjct: 276 RLYEFSFEPSKTHVEFKKWGPVLAFIERITLANWKKDRI 314



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/527 (13%), Positives = 161/527 (30%), Gaps = 66/527 (12%)

Query: 114  QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
                G++  +S   + S    +    +        ++ P+   +    Q    ++   +R
Sbjct: 611  DEKVGSKKYLSSVNVGSSVTGSFCLSSEW---SPMYSTPSATKWESEYQKGCRILEQSLR 667

Query: 174  RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
               +  P+  F+ +      +++  +       +                        + 
Sbjct: 668  LGRMPDPEFCFSAANNIKFDHEVIPE------MDCCETGTDSFTAIQNCTQLADKICKSS 721

Query: 234  QGYTGIPTFNRG--NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
             G+      ++      +F      +    K      R+A        R+  +    +  
Sbjct: 722  WGHADDVRIDQYSIRKEKFSYMDGTQNNAGKQRSKRSRSAPPFYREKKRFISLSCKSDTK 781

Query: 292  P--------RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------- 328
            P          ++    P  +       +I+ +     IQ+   +               
Sbjct: 782  PKNSDPSEPDDLECLTQPCNASQMHLKCSILDDVSYDHIQETEKRLSSASDLKASAGCRT 841

Query: 329  -KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                +    + +   S    D    T   ++  +++   ++      +    D+      
Sbjct: 842  VHSETQDEDVHEDFSSEEFLDPIKSTTKWRHNCAVSQVPKESHELHGQDGVFDISSGLLH 901

Query: 388  TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
              S+++   E       +      Q+ + YI       + IVDQHAA ER+  E++R   
Sbjct: 902  LRSDESLVPESINRHSLEDAKVLQQVDKKYIPIVACGTVAIVDQHAADERIRLEELRTKV 961

Query: 448  NSTKITSQTLLTPEI---------------IDLLEGECALIMEHDEDLHRLGIK--AERF 490
             + K  + T L+ +                  L E    L+  + E +   G        
Sbjct: 962  LAGKARTVTYLSADQELFINDALLIFVLTLKVLPEMGYQLLQSYSEQIRDWGWICNITVE 1021

Query: 491  GPNA--------------IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
            G  +              I +  +P IL        L + + ++ D+  + T+   +  +
Sbjct: 1022 GSTSFKKNMSIIQRKPTPITLNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRV 1081

Query: 537  LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            L + AC G+I  G  +   E + ++  +++     QC HGRPT + L
Sbjct: 1082 LNSKACRGAIMFGDSLLPSECSLIIDGLKQTSLCFQCAHGRPTTVPL 1128


>gi|256750828|ref|ZP_05491713.1| MutL dimerisation [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750411|gb|EEU63430.1| MutL dimerisation [Thermoanaerobacter ethanolicus CCSD1]
          Length = 212

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 3/187 (1%)

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
                +   YII +  D   I+DQHAAHER+++EK    +   KI ++ +  P +++L  
Sbjct: 27  RIVGTLFSTYIIVEKEDVFYIIDQHAAHERILYEKFTSQYE--KIQTRQVTFPIVVELQP 84

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY 527
            +  L+ +  E L++LG   E FG N+I +RE+P IL +    QL  DI++++ D     
Sbjct: 85  RDLELVHQEKELLNKLGYVFEEFGNNSIILREVPVILGQPEARQLFIDIVEKLKDKELVN 144

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSD 587
            +  + ENI+  MAC  ++++   +   E+N+L  +++   N   C HGRP  I +  + 
Sbjct: 145 KISLKEENII-MMACKAAVKAMDNLSEKEINKLFDDLKITENPYTCPHGRPVIIAITKTQ 203

Query: 588 IEKLFGR 594
           +EK+F R
Sbjct: 204 LEKMFKR 210


>gi|240256168|ref|NP_195277.4| MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding / mismatched DNA binding
           [Arabidopsis thaliana]
          Length = 1155

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 150/339 (44%), Gaps = 33/339 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I+ L E + + + +G I+   +  ++EL+ NSLDA +++V   +     S  ++ D+
Sbjct: 1   MKTIKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVSCS-VKVVDD 59

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           G G++ +++ +  +R+ TSK   DF+N+     TFGFRGEAL SI  +S L + ++    
Sbjct: 60  GSGVSRDDLVLLGERYATSKFH-DFTNVETASETFGFRGEALASISDISLLEVRTKAIGR 118

Query: 116 NTGAQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVI 172
             G +  + G K     +     + GT V VRDLF++ P R  ++  S +     I   +
Sbjct: 119 PNGYRKVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKCV 178

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            R+A+ +  VSF+   I+S+        ++  F   + +  G + +N+  ++N     + 
Sbjct: 179 FRIALVHSNVSFSVLDIESDEELFQTNPSSSAF-SLLMRDAGTEAVNSLCKVNVTDGMLN 237

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G+      +    +        R   +                    P  +L +    
Sbjct: 238 VSGFE--CADDWKPTDGQQTGRRNRLQSN--------------------PGYILCIACPR 275

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           R  + +  P+K+++ F+    +  FI +       K  I
Sbjct: 276 RLYEFSFEPSKTHVEFKKWGPVLAFIERITLANWKKDRI 314



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/513 (13%), Positives = 162/513 (31%), Gaps = 52/513 (10%)

Query: 114  QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
                G++  +S   + S    +    +        ++ P+   +    Q    ++   +R
Sbjct: 611  DEKVGSKKYLSSVNVGSSVTGSFCLSSEW---SPMYSTPSATKWESEYQKGCRILEQSLR 667

Query: 174  RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
               +  P+  F+ +      +++  +       +                        + 
Sbjct: 668  LGRMPDPEFCFSAANNIKFDHEVIPE------MDCCETGTDSFTAIQNCTQLADKICKSS 721

Query: 234  QGYTGIPTFNRG--NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
             G+      ++      +F      +    K      R+A        R+  +    +  
Sbjct: 722  WGHADDVRIDQYSIRKEKFSYMDGTQNNAGKQRSKRSRSAPPFYREKKRFISLSCKSDTK 781

Query: 292  P--------RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------- 328
            P          ++    P  +       +I+ +     IQ+   +               
Sbjct: 782  PKNSDPSEPDDLECLTQPCNASQMHLKCSILDDVSYDHIQETEKRLSSASDLKASAGCRT 841

Query: 329  -KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                +    + +   S    D    T   ++  +++   ++      +    D+      
Sbjct: 842  VHSETQDEDVHEDFSSEEFLDPIKSTTKWRHNCAVSQVPKESHELHGQDGVFDISSGLLH 901

Query: 388  TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
              S+++   E       +      Q+ + YI       + IVDQHAA ER+  E++R   
Sbjct: 902  LRSDESLVPESINRHSLEDAKVLQQVDKKYIPIVACGTVAIVDQHAADERIRLEELRTKV 961

Query: 448  NSTKITSQTLLT-PEIIDLLEGECALIMEHDEDLHRLGIK--AERFGPNA---------- 494
             + K  + T L+  + + L E    L+  + E +   G        G  +          
Sbjct: 962  LAGKARTVTYLSADQELVLPEMGYQLLQSYSEQIRDWGWICNITVEGSTSFKKNMSIIQR 1021

Query: 495  ----IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGR 550
                I +  +P IL        L + + ++ D+  + T+   +  +L + AC G+I  G 
Sbjct: 1022 KPTPITLNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGD 1081

Query: 551  KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +   E + ++  +++     QC HGRPT + L
Sbjct: 1082 SLLPSECSLIIDGLKQTSLCFQCAHGRPTTVPL 1114


>gi|73963657|ref|XP_537511.2| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) isoform 1 [Canis familiaris]
          Length = 1456

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 159/410 (38%), Gaps = 33/410 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++  ++ +G  I      ++EL+ NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IECLSVEVQARLRSGLAICSLGQCVEELVLNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S++I     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEANLTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQV-PKTKDVCSRFCQIYGLGKSQKLREIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI-----------------RTAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKFIDFLLRRESIICKPKNGSSSRQVNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           R     + + V+ ++    + DV + PAK+ I F++   +   I ++++  + K+ +   
Sbjct: 297 RANPELHGIYVINMQCQFCEYDVCMEPAKTLIEFQDWDTVLVCIQEAVKMFLKKEKLFME 356

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                    S   D +  +   +         +++  QE   S +D    
Sbjct: 357 LSGEDIKEFSEDNDFSLFSATLQKHVPSDEKGDQVNFQEACNSISDSYEM 406



 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 119/298 (39%), Gaps = 36/298 (12%)

Query: 323  QKAINKKGISTSSVLSKKMISSFHQDNAPK--THLPKYATSLTNTQEKLFLQENRLSTND 380
            +  + +   +    + K+ + S   +         P+ A  +++ Q K  +    +  ++
Sbjct: 1121 RTMMRQNRDTVDDTVGKESLQSLFSEWENPVFARYPEVAVDVSSGQAKSLV----VKIHN 1176

Query: 381  LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
            +L     T    +   +  +    +                  + LV+VDQHAAHER+  
Sbjct: 1177 VLYPYRFTKEMIHSM-QVLQQVDNKFIACLMSTKTEENGEAGGNLLVLVDQHAAHERVRL 1235

Query: 441  EKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--ER 489
            E++  D             K+ S T+  P  I + E +  L+  + ++L  LG++     
Sbjct: 1236 EQLITDSYEKQQPQGSGRKKLLSSTVSPPLKIRVTEEQRRLLRCYHKNLEDLGLEILFPD 1295

Query: 490  FGPNAIAIREIPAILSKKN---------------IPQLLRDIIDEIIDSSTT-YTLQDRI 533
               + + + ++P    ++                + + +R+ ++ +  +     TL   +
Sbjct: 1296 TNDSLVLVGKVPLCFIEREANELRRGRSPVTRNIVEEFIREQVELLQTTGGIQRTLPLTV 1355

Query: 534  ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            + +LA+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1356 QKVLASQACHGAIKFNDGLSREESCRLIEALSWCQLPFQCAHGRPSMLPL--ADIDHL 1411


>gi|300122427|emb|CBK22998.2| unnamed protein product [Blastocystis hominis]
          Length = 234

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 101/200 (50%), Gaps = 15/200 (7%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN---- 59
           +K++   I++IA+G++I      IKEL+ENSLDA ++ ++  +   G    ++ DN    
Sbjct: 6   KKINANDISKIASGQVIVDLRSVIKELVENSLDAGATNIDIRLVNYGADLIEVVDNGNYF 65

Query: 60  ------GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVS-HLTLMS 110
                 G G+   +      ++ TSKI    D  +IH+FGFRGEAL  I  +S    +++
Sbjct: 66  LVPISVGSGILESDFSGLALKYYTSKIHSFGDIRSIHSFGFRGEALSCICELSGEFEVVT 125

Query: 111 RPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLI 168
           R   ++ G  I  + +  I++    A N GT + V++LF  +P R        + + + +
Sbjct: 126 RHSSSDIGWNIRYNPDGSIAAKHERACNKGTTISVKNLFDRLPVRRRAYLHACKTQLSNM 185

Query: 169 TDVIRRMAIAYPKVSFTFST 188
             +++  AI+   V F+ + 
Sbjct: 186 ITLVQSFAISSLGVRFSLTH 205


>gi|73963653|ref|XP_868119.1| PREDICTED: similar to mutL homolog 3 isoform 3 [Canis familiaris]
          Length = 1432

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 159/410 (38%), Gaps = 33/410 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++  ++ +G  I      ++EL+ NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IECLSVEVQARLRSGLAICSLGQCVEELVLNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S++I     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEANLTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQV-PKTKDVCSRFCQIYGLGKSQKLREIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI-----------------RTAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKFIDFLLRRESIICKPKNGSSSRQVNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           R     + + V+ ++    + DV + PAK+ I F++   +   I ++++  + K+ +   
Sbjct: 297 RANPELHGIYVINMQCQFCEYDVCMEPAKTLIEFQDWDTVLVCIQEAVKMFLKKEKLFME 356

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                    S   D +  +   +         +++  QE   S +D    
Sbjct: 357 LSGEDIKEFSEDNDFSLFSATLQKHVPSDEKGDQVNFQEACNSISDSYEM 406



 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 21/175 (12%)

Query: 436  ERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--ERFGP 492
            E   +EK +   +   K+ S T+  P  I + E +  L+  + ++L  LG++        
Sbjct: 1215 EADSYEKQQPQGSGRKKLLSSTVSPPLKIRVTEEQRRLLRCYHKNLEDLGLEILFPDTND 1274

Query: 493  NAIAIREIPAILSKKN---------------IPQLLRDIIDEIIDSSTT-YTLQDRIENI 536
            + + + ++P    ++                + + +R+ ++ +  +     TL   ++ +
Sbjct: 1275 SLVLVGKVPLCFIEREANELRRGRSPVTRNIVEEFIREQVELLQTTGGIQRTLPLTVQKV 1334

Query: 537  LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            LA+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1335 LASQACHGAIKFNDGLSREESCRLIEALSWCQLPFQCAHGRPSMLPL--ADIDHL 1387


>gi|325087793|gb|EGC41103.1| Pms1-prov protein [Ajellomyces capsulatus H88]
          Length = 903

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/445 (19%), Positives = 152/445 (34%), Gaps = 59/445 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L    I  + +  ++  P    KELI+NSLDA ++ +   +A       Q+ DNG
Sbjct: 1   MSIAQLPPDTIRAVRSNSVLSDPCALAKELIDNSLDAGATCISVEVAANTLDTIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   + P+  +R CTSK+   DD  NI   T GFRGEAL S      ++ + +R   +
Sbjct: 61  TGIHPNDRPLVCKRSCTSKLRSIDDLENIGGSTLGFRGEALASAAEMCGNIAITTRVSGD 120

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRR 174
                              +   GTIV V +    +P R     KS     N +  V+  
Sbjct: 121 ---------------CTKASHPTGTIVRVYEFLRFVPVRKQRALKSTSKTLNRMKKVLNA 165

Query: 175 MAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK----- 227
             ++ P++  SF     K++   +   + +      + +VIG + I+    +        
Sbjct: 166 YVLSRPEIRLSFKILKSKNDSSWIYASNKHPTVSTAMLRVIGAEAISQCTTITWPQIQDE 225

Query: 228 ---------------SNEITLQGYTGIPTFNRGNANQ--FYVFINGRTV-QDKFILSTIR 269
                             I L      P  +    N    YV I+ R +     +   + 
Sbjct: 226 RDDSLSGSVERNESIHPVIRLVATIPKPCSDFSAINYAGQYVSIDRRPMSTSNGVAKELV 285

Query: 270 TAYAETIPLGR----------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF-- 317
                 I  G            P   + L   P   DVNV P K+ + F +  ++ +   
Sbjct: 286 ELLKSHIRSGSLCDSGQTPPVDPFCFIHLHCRPGIYDVNVEPLKNDVLFEDSKLVMSIAG 345

Query: 318 -IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
            + +++   I  +     +   +   SS                     +  LF   +  
Sbjct: 346 NLFKAVYGEIKPRHTHQRNCQIENQPSSSRVIRPLDKRSANNQRDHEVEESPLFRHISSS 405

Query: 377 STNDLLPSDDPTYSEDNDPVEESEA 401
           +T D    +    S      +   A
Sbjct: 406 ATKDCHFIERICASPSEAKKDNMSA 430


>gi|73963655|ref|XP_868122.1| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) isoform 4 [Canis familiaris]
          Length = 1280

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 159/410 (38%), Gaps = 33/410 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  LS ++  ++ +G  I      ++EL+ NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IECLSVEVQARLRSGLAICSLGQCVEELVLNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S++I     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEANLTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQV-PKTKDVCSRFCQIYGLGKSQKLREIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI-----------------RTAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKFIDFLLRRESIICKPKNGSSSRQVNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           R     + + V+ ++    + DV + PAK+ I F++   +   I ++++  + K+ +   
Sbjct: 297 RANPELHGIYVINMQCQFCEYDVCMEPAKTLIEFQDWDTVLVCIQEAVKMFLKKEKLFME 356

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
                    S   D +  +   +         +++  QE   S +D    
Sbjct: 357 LSGEDIKEFSEDNDFSLFSATLQKHVPSDEKGDQVNFQEACNSISDSYEM 406



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 88/258 (34%), Gaps = 34/258 (13%)

Query: 353  THLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQ 412
               P+  +  +  +  +   E   +  +               V+E  +T          
Sbjct: 993  ASEPQIGSPDSPNRMSVSHVEVSTADQNGTCFQSEESIARTCSVDEESSTCSLDWQQHFD 1052

Query: 413  IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID-LLEGECA 471
            +    ++               ++              + T    LT   +D L E    
Sbjct: 1053 VALGRMVY-------------INKITGLSTFTAPTEDVRATCTKDLTTIAVDVLHENGNY 1099

Query: 472  LIMEHDEDLHRLGIKA--ERFGPNAIAIREIPAILSKKN---------------IPQLLR 514
            L   + ++L  LG++        + + + ++P    ++                + + +R
Sbjct: 1100 LFRCYHKNLEDLGLEILFPDTNDSLVLVGKVPLCFIEREANELRRGRSPVTRNIVEEFIR 1159

Query: 515  DIIDEIIDSSTT-YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
            + ++ +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC
Sbjct: 1160 EQVELLQTTGGIQRTLPLTVQKVLASQACHGAIKFNDGLSREESCRLIEALSWCQLPFQC 1219

Query: 574  NHGRPTFIKLKLSDIEKL 591
             HGRP+ + L  +DI+ L
Sbjct: 1220 AHGRPSMLPL--ADIDHL 1235


>gi|237838861|ref|XP_002368728.1| DNA mismatch repair protein, putative [Toxoplasma gondii ME49]
 gi|211966392|gb|EEB01588.1| DNA mismatch repair protein, putative [Toxoplasma gondii ME49]
          Length = 1219

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 2/128 (1%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+L   ++  IAAGE++ RPS A+KEL+EN+LDA SS +   +  GG     ++D+G 
Sbjct: 135 QIRRLDPSVVQLIAAGEVVLRPSSALKELLENALDARSSSISVSVHNGGFKLLAVSDDGC 194

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +++ +  QR  TSK+    D   ++TFGFRGEAL S+  V  + + +R      G 
Sbjct: 195 GIHPQDLTILCQRFTTSKLKALSDLRCMNTFGFRGEALASLAVVGQVDVTTRIASLPHGY 254

Query: 120 QIAISGEK 127
           + +    +
Sbjct: 255 RCSYDKGE 262



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 46/106 (43%)

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
             ++++ GY    +        F +FINGR V    +  +I   Y E +P G    V L 
Sbjct: 584 QCQVSVWGYASRISAGVKPPGTFILFINGRLVDAPTLRKSIEGVYQELLPRGLKAWVYLS 643

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
           L + P  +DVNVHP K  ++      +   + +  ++ +  +  S 
Sbjct: 644 LTLPPWLIDVNVHPTKQRVQLLYEDFVAANLAKHFRERLGSQASSQ 689



 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%)

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
            A + GT + V  LF   P R   L S Q E     DV  R AI  P + FT       +
Sbjct: 332 AARSRGTTLRVSRLFHAFPERRKMLASPQEEYAKCLDVCMRYAIDNPHIKFTCRRQDKTQ 391

Query: 194 YKM 196
              
Sbjct: 392 TDF 394


>gi|3367570|emb|CAA20022.1| putative protein [Arabidopsis thaliana]
 gi|7270503|emb|CAB80268.1| putative protein [Arabidopsis thaliana]
          Length = 1151

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 150/339 (44%), Gaps = 33/339 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I+ L E + + + +G I+   +  ++EL+ NSLDA +++V   +     S  ++ D+
Sbjct: 1   MKTIKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFVGVVSCS-VKVVDD 59

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           G G++ +++ +  +R+ TSK   DF+N+     TFGFRGEAL SI  +S L + ++    
Sbjct: 60  GSGVSRDDLVLLGERYATSKFH-DFTNVETASETFGFRGEALASISDISLLEVRTKAIGR 118

Query: 116 NTGAQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVI 172
             G +  + G K     +     + GT V VRDLF++ P R  ++  S +     I   +
Sbjct: 119 PNGYRKVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKCV 178

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            R+A+ +  VSF+   I+S+        ++  F   + +  G + +N+  ++N     + 
Sbjct: 179 FRIALVHSNVSFSVLDIESDEELFQTNPSSSAF-SLLMRDAGTEAVNSLCKVNVTDGMLN 237

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G+      +    +        R   +                    P  +L +    
Sbjct: 238 VSGFE--CADDWKPTDGQQTGRRNRLQSN--------------------PGYILCIACPR 275

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
           R  + +  P+K+++ F+    +  FI +       K  I
Sbjct: 276 RLYEFSFEPSKTHVEFKKWGPVLAFIERITLANWKKDRI 314



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/512 (13%), Positives = 159/512 (31%), Gaps = 54/512 (10%)

Query: 114  QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
                G++  +S   + S    +    +        ++ P+   +    Q    ++   +R
Sbjct: 611  DEKVGSKKYLSSVNVGSSVTGSFCLSSEW---SPMYSTPSATKWESEYQKGCRILEQSLR 667

Query: 174  RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
               +  P+  F+ +      +++  +       +                        + 
Sbjct: 668  LGRMPDPEFCFSAANNIKFDHEVIPE------MDCCETGTDSFTAIQNCTQLADKICKSS 721

Query: 234  QGYTGIPTFNRG--NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
             G+      ++      +F      +    K      R+A        R+  +    +  
Sbjct: 722  WGHADDVRIDQYSIRKEKFSYMDGTQNNAGKQRSKRSRSAPPFYREKKRFISLSCKSDTK 781

Query: 292  P--------RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK--------------- 328
            P          ++    P  +       +I+ +     IQ+   +               
Sbjct: 782  PKNSDPSEPDDLECLTQPCNASQMHLKCSILDDVSYDHIQETEKRLSSASDLKASAGCRT 841

Query: 329  -KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
                +    + +   S    D    T   ++  +++   ++      +    D+      
Sbjct: 842  VHSETQDEDVHEDFSSEEFLDPIKSTTKWRHNCAVSQVPKESHELHGQDGVFDISSGLLH 901

Query: 388  TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
              S+++   E       +      Q+ + YI       + IVDQHAA ER+  E++R  F
Sbjct: 902  LRSDESLVPESINRHSLEDAKVLQQVDKKYIPIVACGTVAIVDQHAADERIRLEELRTKF 961

Query: 448  NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK--AERFGPNA----------- 494
             +  +    +    +  L E    L+  + E +   G        G  +           
Sbjct: 962  INDAL---LIFVLTLKVLPEMGYQLLQSYSEQIRDWGWICNITVEGSTSFKKNMSIIQRK 1018

Query: 495  ---IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
               I +  +P IL        L + + ++ D+  + T+   +  +L + AC G+I  G  
Sbjct: 1019 PTPITLNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDS 1078

Query: 552  MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            +   E + ++  +++     QC HGRPT + L
Sbjct: 1079 LLPSECSLIIDGLKQTSLCFQCAHGRPTTVPL 1110


>gi|126282671|ref|XP_001375015.1| PREDICTED: similar to RNA binding motif protein 22 [Monodelphis
           domestica]
          Length = 1453

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/506 (19%), Positives = 184/506 (36%), Gaps = 40/506 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LSE++  ++ +G  I   S  I+EL  NS+DA++  V   I        Q+ DNG G
Sbjct: 2   IKCLSEEVQVKLRSGVAIGSLSQCIEELALNSIDADAKCVAVRI-NMETFKVQVIDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M  ++I    +++ TSK     D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MERDDIERVGKQYFTSKCKSVQDLENPKFYGFRGEALSSIANMASAVEISSKTNRTVKTF 120

Query: 120 QIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K   +        + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 MKLFQNGKTLEVCEAEVTRPSSGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDISGSMVLQL-PKTKDTCSRFCQIYGLGKSQKLREIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +      P  
Sbjct: 239 ISSE--AHYNKNLQFLFVNKRLVLRTRLHKLIDFLLRKESIICRPKGSFASKQMSLSPPR 296

Query: 280 R------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
                  Y + VL ++    + DV + PAK+ I F+N   I     + I+  + ++ +  
Sbjct: 297 HRSNPELYGIYVLNVKCQFCEYDVCLDPAKTLIEFKNWDTILVCFQEGIKTFLKQEQL-- 354

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
              LS + I  F++D+             ++ +    +Q N     + +      ++  +
Sbjct: 355 FVELSGEDIKEFNEDSGLTLFSAILQPMASDEKC---VQNNFQEACENIMDSYEIFNMKS 411

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             V+   A        C    ++    +    L   D +  +   + E      + T+  
Sbjct: 412 KTVKRKAAMESITLKTCGS-EEDLEQVKDCQVLTSSDPNDTYFNDMIESSVPCQDGTRSE 470

Query: 454 SQTLLTPEIIDLLEGECALIMEHDED 479
              L   E+      +        E 
Sbjct: 471 PNVLKQQEMKFTDSEKNNTKNTCLEL 496



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 31/194 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S T+  P  + + E +  L+  +
Sbjct: 1226 LVLVDQHAAHERIRLEQLIYDSYEKEQPKSFRRKKLLSSTIYPPMEVTVTEEQRRLLECY 1285

Query: 477  DEDLHRLGIKAERFGPNA---IAIREIPAILSKKNI---------------PQLLRDIID 518
             + L  LG+K   F       + + ++P    ++                  + +R+ ++
Sbjct: 1286 HKGLEGLGLKL-IFPDATSSHVLVEKVPLCFVEREANEVRRGRPTVTKSMLEEFIREQVE 1344

Query: 519  EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +  +     TL   I+ +LA+ AC+G+I+    +   E  RL+  + +     QC HGR
Sbjct: 1345 LLQTTGGAQGTLPLAIQKVLASQACHGAIKFNDSLSLRESRRLIEALSQCQLPFQCAHGR 1404

Query: 578  PTFIKLKLSDIEKL 591
            P+ + L  +DI+ L
Sbjct: 1405 PSMLPL--ADIDHL 1416


>gi|301757817|ref|XP_002914774.1| PREDICTED: DNA mismatch repair protein Mlh3-like [Ailuropoda
           melanoleuca]
          Length = 889

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 163/425 (38%), Gaps = 33/425 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NSLDAE+  V   +        Q+ DNG G
Sbjct: 2   IKCLSVEVQARLRSGLAICSLGQCVEELALNSLDAEAKCVAVRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S++I     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTGKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+  P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEADLTRPSAGTTVTVYNLFYQFPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        ++  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLAKSQKLRDIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R +    +   I                       + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLILRTKLHKFIDFLLRKESIICKPKNGSAARQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           R     + + V+ ++    + DV + PAK+ I F+N   +   I + ++  + K+ +   
Sbjct: 297 RSNPELHGIYVVNMQCRFCEYDVCMEPAKTLIEFQNWDTVLVCIQEGVKMFLKKEKLFVE 356

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
                    S   D +  +   +   S     ++LF  E   + + ++P  D    +++ 
Sbjct: 357 LSGEDIKEFSEDNDFSLFSATLQKRVSSDEKGDQLFQNEYEKTESGIIPVLDSVTQDNSF 416

Query: 395 PVEES 399
             +  
Sbjct: 417 NKDSE 421



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S  +  P  I + E +  L+  +
Sbjct: 654 LVLVDQHAAHERVRLEQLITDSYEKQQPQGSGRKKLLSSIVSPPLEIRVTEEQRRLLRCY 713

Query: 477 DEDLHRLGIKAE--RFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            ++L  LG++        + + + ++P    ++                + + +R+ ++ 
Sbjct: 714 HKNLEDLGLEIIFPDTSDSLVLVGKVPLCFVEREANELRRGRSPVTKSIVEEFIREQVEL 773

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 774 LQTTGAIQGTLPLTVQKVLASQACHGAIKFNDGLSPEESCRLIEALSWCQLPFQCAHGRP 833

Query: 579 TFIKLKLSDIEKL 591
           + + L  +DI+ L
Sbjct: 834 SMLPL--ADIDHL 844


>gi|255002939|ref|ZP_05277903.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004064|ref|ZP_05278865.1| DNA mismatch repair protein (mutL) [Anaplasma marginale str.
           Virginia]
          Length = 199

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/189 (41%), Positives = 123/189 (65%), Gaps = 1/189 (0%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A  Q+   YI+S+  D ++IVDQHAAHERL +E M++      +  Q LL PE+++L 
Sbjct: 10  GNAVCQLFDRYIVSRAGDHVIIVDQHAAHERLTYEYMKKVTADEGMKRQVLLMPELVELD 69

Query: 467 EGEC-ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
                 L+ E+ E L + G+  E  G   +A+RE+PAIL   ++  ++  I++ I++   
Sbjct: 70  NEYELELLGEYKEKLLKFGLVIEPMGSMVVAVREVPAILGVFDVKAMIAKIVESIVEVGD 129

Query: 526 TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKL 585
              ++++I+++  T+ACY SIRSGR ++  EMN LLR+ME  P+S QCNHGRPT++KL L
Sbjct: 130 ALFMREKIKHVCGTIACYSSIRSGRTLKLEEMNSLLRQMEDTPHSGQCNHGRPTYVKLSL 189

Query: 586 SDIEKLFGR 594
           S+I++LF R
Sbjct: 190 SEIDRLFER 198


>gi|296215528|ref|XP_002754163.1| PREDICTED: DNA mismatch repair protein Mlh3 [Callithrix jacchus]
          Length = 1456

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSAEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDVDKVGNRYFTSKCHSVQDLENPRFYGFRGEALASIADMASTVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEADVTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PRTKDVCSRFCQIYGLGKSQKLREISFKYKEFELNGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI-----------------RTAYAETIPLG 279
                    N N  ++F+N R +    +   I                       + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLILRTKLHKLIDFLLRKESIICKPKNGSSNRQMNSSPRP 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLYCIQEGVKMFLKQ 350



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 29/228 (12%)

Query: 391  EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
            E    ++  +    +        +         + LV+VDQHAAHER+  E++  D    
Sbjct: 1187 EMIHSMQVLQQVDNKFIACLMSTNTEENGKAGGNLLVLVDQHAAHERVRLEQLINDSYEK 1246

Query: 451  ---------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG--IKAERFGPNAIAIRE 499
                     K+ S TL+ P  I + E +  L+  + ++L  LG          + + + +
Sbjct: 1247 QQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLRCYHKNLEDLGLEFVFPDTSDSLVLVGK 1306

Query: 500  IPAILSKKN---------------IPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACY 543
            +P    ++                + + +R+ ++ +  +      L   ++ +LA+ AC+
Sbjct: 1307 VPLCFVEREANELRRGRSTVTRSMVEEFIREQVELLQTTGGIQGILPLTVQKVLASQACH 1366

Query: 544  GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            G+++    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1367 GAVKFNDGLSLEESCRLIEALSLCQLPFQCAHGRPSMLPL--ADIDHL 1412


>gi|224051509|ref|XP_002199972.1| PREDICTED: similar to mutL homolog 3 (E. coli) [Taeniopygia
           guttata]
          Length = 1432

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 148/358 (41%), Gaps = 34/358 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+L E +  ++ +   +      ++EL+ NS+DA+++ V   +        Q+ DNG G
Sbjct: 2   IRRLVEDVRARLRSEVTVNSLGHCVEELVLNSIDAKATCVAIRVDLEAFK-IQVVDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M  E++    +R+ TSK S   D  N+  +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGKEDLKAVGKRYFTSKCSSVRDLENLTFYGFRGEALASIANMASVVEISSKTSRTAKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  +   V    +N    GT V V +LF  +P R   +    +E   +   +  ++
Sbjct: 121 MKLFHNGQALEVCEAELNRPSGGTTVTVCNLFHQLPVRRKCMDPV-LEIERVRQKVEAVS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VS +     S    +    T  +   R  Q+ G        E+N KS    + G+
Sbjct: 180 LMHPSVSLSLRNDVSCSMVLQLPKTR-DVYSRFCQIYGLGRSQKLREINHKSGGFEISGF 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT--------AYAETIPLGR-------- 280
                    N N  ++++N R V    +   I            A+++P  R        
Sbjct: 239 ISTE--GHYNKNMQFLYVNRRLVLKTRLHKLIDFLLRKESVICKAKSVPANRQANSSPGR 296

Query: 281 -------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGI 331
                  Y + +L +       DV + PAK+ I F+N  ++   I + ++  + ++ +
Sbjct: 297 YRSGPELYGIFILNVTCAYSDYDVCLEPAKTLIEFQNWDVLLTCIEEGVKIFLKREHL 354



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 32/235 (13%)

Query: 387  PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG---LVIVDQHAAHERLIFEKM 443
              Y    D V   +          A +       +       L++VDQHAAHER+  E++
Sbjct: 1173 YPYRFTKDMVHSMQVLQQVDNKFIACLINTRNGMEKKADGNLLILVDQHAAHERIRLEQL 1232

Query: 444  RQDFNST--------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE--RFGPN 493
              D            KI S ++  P  I++ E +   +    ++L  LG++        +
Sbjct: 1233 IADSYEKEAAACGKKKILSSSISPPLEIEVTEEQRRFLRCCYKNLEDLGLELSFPETNNS 1292

Query: 494  AIAIREIPAILSKKNIPQL-----------LRDIIDEIIDS------STTYTLQDRIENI 536
             I +R++P    ++   +L           + ++I E ++           TL      +
Sbjct: 1293 LILVRKVPMCFIEREANELRRKRQPITKSIVEELIQEQVELLQTTRGGARGTLPLTFLKV 1352

Query: 537  LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            LA+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1353 LASQACHGAIKFNEHLTLEESCRLIEALSSCKLPFQCAHGRPSMLPL--ADIDHL 1405


>gi|302694191|ref|XP_003036774.1| hypothetical protein SCHCODRAFT_103012 [Schizophyllum commune H4-8]
 gi|300110471|gb|EFJ01872.1| hypothetical protein SCHCODRAFT_103012 [Schizophyllum commune H4-8]
          Length = 816

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 156/420 (37%), Gaps = 22/420 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDN 59
           ++ +LSE    ++ + +I+      + EL++NSLDA +  V+  +     G     + D+
Sbjct: 4   RLERLSEATQTRLRSTQILTSLPQLVSELVQNSLDAGARHVDVGVNCEEYGCW---VRDD 60

Query: 60  GFGMTSEEIPMA-----VQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRP 112
           G GM   ++         +R+ +SK+   +      TFGFRGEAL S   +  L + SR 
Sbjct: 61  GCGMGRTDLDALAAGGGGERYVSSKVYAPNQVGEQATFGFRGEALASAADLCCLEIASRT 120

Query: 113 PQNNTGAQIAISGEKISSVRPVAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
            ++     I +   K     P        PGT+V VRD F+ +P R     S      LI
Sbjct: 121 ARSRESWSIILKDRKTLYNGPAVRWRRETPGTVVCVRDAFYNLPVRRRSHPSPSRTLELI 180

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
              +   A+ +P V+F+     +++   +  S     P           +          
Sbjct: 181 RQELSAYALVFPHVTFSLENTSTSQQSTSSSSNILRIPAVCVPSHDSGLVLTLAADKLDV 240

Query: 229 NEITLQGYTGI---PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVV 284
           +++    +         +    +  +  I+ R     F +  +       +P   + PV 
Sbjct: 241 DDLQTYTWACSGADVNRHPLAPSDMHRLIDQRFASSSFGMHALDEDGQNDLPKSEKRPVY 300

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VL + + P Q+D  + PAK+ + F +   + + + +++   +++ G   ++   +K    
Sbjct: 301 VLNITVPPHQIDNCLEPAKAEVNFEDRRSVIDLLDRAVSSFLSRNGFRAATPSPRKRRKV 360

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFL--QENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
                      P+ A S+           + +          D+   S      E  E  
Sbjct: 361 APDGPGVDVTPPRRAASMPKRVSAPVYIDRASSFPIASGARLDNGRPSTATRREEHEEIW 420



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 104/324 (32%), Gaps = 67/324 (20%)

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
                   + L  +     +   AP  +  +   +L+  Q ++  ++   ++     +  
Sbjct: 472 QSSATPAETPLWIRKALEANVSYAPTQNRQEPQRALSFQQRRMLQEQQARASQPQGRTAQ 531

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYII------------SQTTDGLVIVDQHAA 434
                     ++         + C  I                   +   GLV++DQHAA
Sbjct: 532 EERRAYQFSTDDLRRARVIAQVDCKFIACMMQPAAASTKDDSSEKQRARSGLVLIDQHAA 591

Query: 435 HERLIFEKMRQ---------DFNSTKITSQTLLTPEIIDLL--EGECALIMEHDEDLHRL 483
            ER+  E+  +               +  + L  P+ I L   E +   + E+       
Sbjct: 592 DERVRVERYMRELCTGFTAARAGQQGVRCRALDPPKAILLTRKERQQLYVEENRRAFGWW 651

Query: 484 GIKAERFGPN---------------------AIAIREIPAILSKKNI-PQLLRDII---- 517
           G +    G +                      + +  +P ++++K +    LRD++    
Sbjct: 652 GFRFTDEGEDVHGDALEGDMDDAGKGGSAYAQVEVVFVPEMIAEKLLLENELRDLVKGYL 711

Query: 518 ------------DEIIDSSTTYTLQDRIE------NILATMACYGSIRSGRKMQSIEMNR 559
                         +    ++  L+          +IL + AC G+I     +   +  +
Sbjct: 712 AKLADEGAPPRTSNVAADGSSGWLKALRWCPKELVDILNSKACRGAIMFNDPLSMAQCEK 771

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L++++ +     QC HGRP+ + L
Sbjct: 772 LIKQLTETAFPFQCAHGRPSLVPL 795


>gi|1055354|gb|AAA97458.1| hPMSR2 [Homo sapiens]
          Length = 389

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPS-IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           I+ +  K ++QI +G ++      A+KEL+ENSLDA ++ V+  +   G    +++ NG 
Sbjct: 163 IKPIDRKSVHQICSGPVVPSLRPNAVKELVENSLDAGATNVDLKLKDYGVDLIEVSGNGC 222

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  E       +H T KI +  D + + TFGFRGEAL S+ A+S +T+ +       G 
Sbjct: 223 GVEEENFEGFTLKHHTCKIQEFADLTQVETFGFRGEALSSLCALSDVTISTCRVSAKVGT 282

Query: 120 QIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           ++      KI    P     G  V V+ LF T+P      +    +              
Sbjct: 283 RLVFDHYGKIIQKTPYPRPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQ 342

Query: 179 YPKVS 183
           +P+ S
Sbjct: 343 FPEAS 347


>gi|51245819|ref|YP_065703.1| DNA mismatch repair protein MutL [Desulfotalea psychrophila LSv54]
 gi|50876856|emb|CAG36696.1| related to DNA mismatch repair protein MutL [Desulfotalea
           psychrophila LSv54]
          Length = 312

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 127/264 (48%), Gaps = 2/264 (0%)

Query: 332 STSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSE 391
             S+V+ +K  +    +   +T             +    QE  ++ +  + +       
Sbjct: 49  VQSAVVGEKSAAPMRVEPLVETAEGTEVYQRQEPAKVYQRQEPAVTESSRVEAVQIDQEP 108

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK 451
             + +   E    +      Q+   YI  ++  GLV++DQHAAHERL++EK+++ F++  
Sbjct: 109 VAEQLLPREE-EGRGLEILGQVDNLYIFCRSQAGLVVIDQHAAHERLLYEKLKKHFSANS 167

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           +  Q LL PE ++L   +  L+ +H EDL ++G     FG N+  I  IPA+  +    +
Sbjct: 168 MVKQNLLFPETVELSLYQSQLVEKHLEDLEKMGFSLRDFGGNSYVIGAIPALAGQIAPQK 227

Query: 512 LLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           +  D++++      +     D +++ILA+MAC  +I++G ++   EM  LL +M      
Sbjct: 228 IFFDVLEQFGADGKSRKDAGDMLDSILASMACRAAIKAGARLSQREMESLLADMAAADLF 287

Query: 571 SQCNHGRPTFIKLKLSDIEKLFGR 594
           S C HGRP   +    +I+K F R
Sbjct: 288 SHCPHGRPVVKQFSSDEIKKWFYR 311


>gi|116206880|ref|XP_001229249.1| hypothetical protein CHGG_02733 [Chaetomium globosum CBS 148.51]
 gi|88183330|gb|EAQ90798.1| hypothetical protein CHGG_02733 [Chaetomium globosum CBS 148.51]
          Length = 821

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 153/402 (38%), Gaps = 42/402 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E  +  + +  +I  P + +KEL++N++DA ++ ++ +++       ++ DNG
Sbjct: 1   MSIVPLPEATVRNLGSSLVITSPVVLLKELVDNAIDAGATSIDVLVSPNTIDKIEVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G++  +         TSK++  D+   +   T GFRG AL S   +++++L +R P  +
Sbjct: 61  HGISPADFGYLGCPGHTSKLTSLDELDTLGGKTLGFRGVALASANTLANVSLTTRVPTEH 120

Query: 117 TGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRR 174
             A I+++    + ++R V    GT V V +LF  +P R    +K        + ++++ 
Sbjct: 121 VAAAISLAKRGGVDTLRYVGAPVGTTVRVTNLFSHMPVRSQVTVKEAPRNLARMNELLQS 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKM-NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
             +A P V   F+ +K+         + NG       Q+ G +  +  V     S     
Sbjct: 181 YVLARPTVKLRFTVLKTPNLSWSYAPAANGEIKAAAIQLFGTELASQCVFKTSPSQITPG 240

Query: 234 QGYTGI----PTFNR--------------GNANQFYVFINGRTVQDKFILSTIRTAYAET 275
              T      P  +                 A+   +        D   LS  R A  + 
Sbjct: 241 GDKTSRDENVPDCSPKEGTRVIFEALLPRPTADPQKISKGAFISVDARPLSAFRGAAKKL 300

Query: 276 IPLG-----------------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           + +                  R P + L +   P   DVNV P+K  + F+    I +  
Sbjct: 301 LSIFKKRIGDHFASIHSETILRNPFIRLNIRCPPSTYDVNVEPSKEDVIFKEEHNIIDQF 360

Query: 319 IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
              +       G+  S  L      +  +    KT     ++
Sbjct: 361 ESFLSYVYPASGVGQSRPLPITTTGTSVEAPGRKTTNISNSS 402


>gi|119180246|ref|XP_001241612.1| hypothetical protein CIMG_08775 [Coccidioides immitis RS]
          Length = 682

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 139/328 (42%), Gaps = 11/328 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L     + I +   I  P   ++ELI+N+LDA ++ +   ++        + DNG
Sbjct: 1   MPIAELDRAAAHAIGSASAISDPCSVVRELIDNALDANATIISVELSANLLDTIHVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLT-LMSRPPQN 115
            G+  E+  +  +++CTSKI   DD  ++     GFRG+AL S   +S  T +++R    
Sbjct: 61  LGIPPEDRELICRQNCTSKIKTLDDLKHVGGKLLGFRGQALASTTQMSESTVIITRITAE 120

Query: 116 NTGA--QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVI 172
            T +  +   +G+ +SS   VA   GT V V      +P R   + KS     + I   +
Sbjct: 121 TTASILEFGRAGDILSSKGMVAHPVGTSVRVSGFLKYLPVRRQMVLKSSSKIVSRIKKAL 180

Query: 173 RRMAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           +  A++ P V  S   S  K     +     + +  + IS++IG +   + +  +   N+
Sbjct: 181 QNYALSRPWVRLSLKISRQKRGFAWIYAPKQSPSVADAISKIIGAEVAAHRLGQSLTHND 240

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI-RTAYAETIPLGRYPVVVLLLE 289
              +      +  + +A    +         K   S I RT    + P    P V L L 
Sbjct: 241 PNPENSDEGKSTAQVHAVIPKLDAGIAKDLVKIYKSYINRTFGRPSTPAITDPFVYLYLS 300

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
             P   DVNV P+K  + F +   I   
Sbjct: 301 CPPGIYDVNVDPSKDDVLFADSRSILCL 328


>gi|149737526|ref|XP_001490730.1| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) [Equus caballus]
          Length = 1453

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 158/400 (39%), Gaps = 33/400 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKRLSVEVQAKLRSGLAICSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK S   D  N+  +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDVDKVGNRYFTSKCSSLQDLENLRFYGFRGEALASIADMASAVEISSKKNKTMKTF 120

Query: 120 QIAISGEKISSVRPVAM---NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +   + GT V V +LF+ +P R   +   ++E   +   +  ++
Sbjct: 121 VKLFQNGKALKACEAELSRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+N K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREINFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R +    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLILRTKLHKLIDFLLRKESIICKPKNGSASRQMTSNPRY 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS 334
           R     + + V+ ++    + DV + PAK+ I F+N       + + ++  + K+ +   
Sbjct: 297 RSNPELHGIYVINMQCQFCEYDVCMDPAKTLIEFQNWDTPLVCVQEGVKMFLKKEKLFVE 356

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
                    S   D +      +   S     +++  QE 
Sbjct: 357 LSGEDIKEFSEDNDFSFFNATLQKHVSSDEKGDQVSFQEA 396



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S T+  P  I + E +  L+  +
Sbjct: 1218 LVLVDQHAAHERVRLEQLIIDSYEKQQPQGSGRKKLLSSTISPPLEISVTEEQRRLLRCY 1277

Query: 477  DEDLHRLGIKA--ERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
               L  LG++        + + + ++P   +++                + + +R+ ++ 
Sbjct: 1278 HNSLEDLGLEILFPDTSDSLVLVGKVPLCFAEREANELRRGRATVTKSIVEEFIREQVEL 1337

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1338 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLEESCRLIEALSWCQLPFQCAHGRP 1397

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1398 SMLPL--ADMDHL 1408


>gi|322502987|emb|CBZ38071.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 840

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 147/386 (38%), Gaps = 61/386 (15%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L      ++AAG++I   +  +KEL EN+LDA+++ V   +   G     + D+G G
Sbjct: 2   ITRLDGASARKLAAGQVITDLTSVVKELSENALDAKATTVTIRLINYGLDEIVVDDDGTG 61

Query: 63  MT--------SEEI------PMAVQR--------------HCTSKISDDFSNIH------ 88
           ++        + E+      P+   R              H T+K   D           
Sbjct: 62  ISMGQLVNTAANELLDGASTPLLSSRATTKQRRHDRDGCTHATAKDEADEGQTSQAESAC 121

Query: 89  -----------TFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGAQIAISGEKISSVRPVAM 136
                      + GFRGEAL S+  VS +T+ +R         +I+      +S      
Sbjct: 122 VAEDEGDSSDPSLGFRGEALHSLAHVSDVTVETRSADTGALTVRISYDHTSHTSRLEAVR 181

Query: 137 ---NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI--- 189
                GT V  R LF  +P R   ++K+ + + + +   +++ A+++P +          
Sbjct: 182 LRDVCGTTVTARHLFKHLPVRHREYVKNCRKQLSKVASTMKQYAVSHPHIRLLMQHQETP 241

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA-N 248
            S    +   + +G+    +++  G    ++   ++   +  T  G     +     + +
Sbjct: 242 NSAVVTLVSLTGSGDATRSVTEAYGGLCTSHMQRVHWSLSFGTFAGLVSKVSGGGRLSGD 301

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLLLEIDPR-QVDVNVHPAKS 304
                ++GR V    +   +  A+ + +P      +    L ++ +   Q DVN+ P K 
Sbjct: 302 HQVFALDGRLVDLPRLGKALNDAFIQCLPNASQRLHVAFFLQVKTNASLQYDVNLTPNKR 361

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKG 330
            +       + + +    Q A+ + G
Sbjct: 362 KVLLAQEERLADELY---QCALQEFG 384



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 6/187 (3%)

Query: 407 GIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                Q +  +II+   +G + +VDQHA+ E+  +E++ + + +T    Q L+ P  + +
Sbjct: 651 MRVIGQFNHGFIIAVLPNGDVFVVDQHASDEKYNYERLVRAYEATP---QPLVMPVSVAM 707

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNA-IAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
              E  L +EH   L + G K  R   +  + +  +P +         + +++ +++   
Sbjct: 708 SAHEVDLAVEHKLTLQQHGFKVSRGSDDTKLLVYSLPVLPYDVVSASDVMELVQQLVQYG 767

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL- 583
           T       + + +AT AC  SI  G  +    M  +L  + +      C HGRPT   L 
Sbjct: 768 TITKPLRAVWHSMATKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGRPTLRLLC 827

Query: 584 KLSDIEK 590
            ++D+++
Sbjct: 828 SIADLQR 834


>gi|74205421|dbj|BAE21026.1| unnamed protein product [Mus musculus]
          Length = 1411

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 139/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+ +  ++ +G  I      ++EL  NS+DAE + V   +        Q+ DNG G
Sbjct: 2   IRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEVTCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  ++  + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  +     +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALATHEADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F++   +   I + +++ + +
Sbjct: 297 RSASEPHGIYVINVQCPFCEYDVCIEPAKTLIEFQSWDTVLICIQEGVKRFLKQ 350



 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S T++ P  I + E +  L+  +
Sbjct: 1181 LVLVDQHAAHERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSY 1240

Query: 477  DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             + L  LG++        + I + ++P    ++                + +L+R+ ++ 
Sbjct: 1241 HKHLEDLGLELLFPDASDSLILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVEL 1300

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+   ++   E  RL+  +  +    QC HGRP
Sbjct: 1301 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDRLSLEESCRLIEALSLSQLPFQCAHGRP 1360

Query: 579  TFIKLKLSDIEKL 591
            + + L  +D++ L
Sbjct: 1361 SMLPL--ADLDHL 1371


>gi|297802396|ref|XP_002869082.1| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314918|gb|EFH45341.1| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1119

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 149/336 (44%), Gaps = 33/336 (9%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK I+ L E + + + +G I+   S  ++E++ NSLDA +++V   +     S  ++ D+
Sbjct: 1   MKTIKPLPEGVRHSMRSGIIMFDMSRVVEEIVFNSLDAGATKVSIFVGVVSCS-VKVVDD 59

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNIHT----FGFRGEALPSIGAVSHLTLMSRPPQN 115
           G G++ +++ +  +R+ TSK   DF+N+ T    FGFRGEAL SI  +S L + ++    
Sbjct: 60  GSGVSRDDLVLLGERYATSKFH-DFTNVETAGESFGFRGEALASISDISLLEVRTKAIGR 118

Query: 116 NTGAQIAISGEKISS--VRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVI 172
             G +  + G K     +     + GT V VRDLF++ P R  ++  S +     I   +
Sbjct: 119 PNGYRKVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKCV 178

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            R+A+ +  VSF+   I+S+        ++  F   + +  G + +N+  ++N     + 
Sbjct: 179 FRIALVHSNVSFSVLDIESDEELFQTNPSSSAF-SLLMRDAGTEAVNSLCKVNVTDGMLN 237

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + G+      +    +        R   +                    P  +L +    
Sbjct: 238 VSGFE--CADDWKPTDGQQTGRRNRLQSN--------------------PGYILCITCPR 275

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
              + +  P+K+++ F+    +   I + +  +  K
Sbjct: 276 HLYEFSFEPSKTHVEFKKWGPVLALIERIVLASWKK 311



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/506 (13%), Positives = 163/506 (32%), Gaps = 62/506 (12%)

Query: 114  QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
            ++  G +   S   + +    + +  +        F+ P+   +    Q    ++   +R
Sbjct: 599  EDKVGREKYHSYVNVGNSVTGSFSLSSEW---SPMFSTPSATKWESDYQKGCRILERSLR 655

Query: 174  RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
               +  P+  F+ +   +  +++  +             I     ++ +           
Sbjct: 656  LGRMPDPEFCFSAANNINFDHEVIPEMDCWKTGADSFTDIQNSIKSDEIFCKSSWEHAD- 714

Query: 234  QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID-- 291
                GI  ++             +    K      R+A        R+  +  + +    
Sbjct: 715  --DVGIEQYSIRKDKF---SYGTQYHVGKQRSKRSRSAPPFCREKKRFISLSCISDTKSK 769

Query: 292  ------PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS---------- 335
                  P  ++    P  +        I+ + I ++ ++  +   +  S+          
Sbjct: 770  NSDPSEPDDLECLTQPCNASHMHLKCNILDDNIQETEKRLSSASDLKASAGCRTVHSETQ 829

Query: 336  --VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
                 +   S  + D    T   ++  +++   ++     ++ S  D+        S+++
Sbjct: 830  DEDGGEDFSSEENLDPIKSTTKWRHNCAVSQVGKESHELHDQDSVLDISSGLLHLRSDES 889

Query: 394  DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
               E       +      Q+ + YI       + IVDQHAA ER+  E++R+        
Sbjct: 890  LVPESINRHSLEDAKVLQQVDKKYIPIVACGTVAIVDQHAADERIRLEELRKK------- 942

Query: 454  SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIK--AERFGPNA--------------IAI 497
                       L E    L+  + E +   G        G  +              I +
Sbjct: 943  ----------VLPEMGYQLLQSYAEQIRDWGWICNINVEGSTSFKKNMSIIQRKSTPITL 992

Query: 498  REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
              +P IL        L + + ++ D+  + T+   +  +L + AC G+I  G  +   E 
Sbjct: 993  NAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSEC 1052

Query: 558  NRLLREMEKNPNSSQCNHGRPTFIKL 583
            + ++  +++     QC HGRPT + L
Sbjct: 1053 SLIIDGLKQTSLCFQCAHGRPTTVPL 1078


>gi|281351439|gb|EFB27023.1| hypothetical protein PANDA_002680 [Ailuropoda melanoleuca]
          Length = 1454

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/354 (22%), Positives = 140/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NSLDAE+  V   +        Q+ DNG G
Sbjct: 2   IKCLSVEVQARLRSGLAICSLGQCVEELALNSLDAEAKCVAVRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S++I     R+ TSK +   D  N   +GFRGEAL SI  + S + + S+  +     
Sbjct: 61  MGSDDIDKVGNRYFTSKCNSIQDLENPRFYGFRGEALASIADMASAVEISSKKNRTGKTF 120

Query: 120 QIAISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+  P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQNGKALKACEADLTRPSAGTTVTVYNLFYQFPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        ++  K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLAKSQKLRDIKFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R +    +   I                       + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLILRTKLHKFIDFLLRKESIICKPKNGSAARQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           R     + + V+ ++    + DV + PAK+ I F+N   +   I + ++  + K
Sbjct: 297 RSNPELHGIYVVNMQCRFCEYDVCMEPAKTLIEFQNWDTVLVCIQEGVKMFLKK 350



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S  +  P  I + E +  L+  +
Sbjct: 1219 LVLVDQHAAHERVRLEQLITDSYEKQQPQGSGRKKLLSSIVSPPLEIRVTEEQRRLLRCY 1278

Query: 477  DEDLHRLGIKAE--RFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG++        + + + ++P    ++                + + +R+ ++ 
Sbjct: 1279 HKNLEDLGLEIIFPDTSDSLVLVGKVPLCFVEREANELRRGRSPVTKSIVEEFIREQVEL 1338

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1339 LQTTGAIQGTLPLTVQKVLASQACHGAIKFNDGLSPEESCRLIEALSWCQLPFQCAHGRP 1398

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1399 SMLPL--ADIDHL 1409


>gi|253577129|ref|ZP_04854450.1| DNA mismatch repair protein MutL [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843511|gb|EES71538.1| DNA mismatch repair protein MutL [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 176

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 3/175 (1%)

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           Q   GL I+DQHAAHER+ +E   + F      SQ LL P  ++    + A + E     
Sbjct: 2   QNDQGLYIIDQHAAHERVNYEYYYEKFGRPADASQELLIPITLEFTPSDSAKLQERLHWF 61

Query: 481 HRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
            ++G+  E FG     +   P    +     ++ ++ + +++         ++    +TM
Sbjct: 62  EQVGVVLEHFGGGTFRVVAHPYWFPQGEEASIIEEMAEWVLNERAIDL--AKLREASSTM 119

Query: 541 -ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            +C  SI++ +K+   E N LLR +        C HGRP  +     D+EKLF R
Sbjct: 120 VSCKASIKANQKLTPEEANTLLRRLAACKQPYTCPHGRPIIVSFSTYDLEKLFKR 174


>gi|119601617|gb|EAW81211.1| mutL homolog 3 (E. coli), isoform CRA_a [Homo sapiens]
          Length = 1445

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 21/185 (11%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1219 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1278

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKNIPQLLR-------DIIDEIIDSSTTY 527
             ++L  LG          + + + ++P    ++   +L R        I++ +  +    
Sbjct: 1279 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVELLQTTGGIQ 1338

Query: 528  -TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +
Sbjct: 1339 GTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRPSMLPL--A 1396

Query: 587  DIEKL 591
            DI+ L
Sbjct: 1397 DIDHL 1401


>gi|6689928|gb|AAF23904.1|AF195657_1 DNA mismatch repair protein [Homo sapiens]
          Length = 1429

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 25/254 (9%)

Query: 361  SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
            S  + Q      +N +       + D +  +      +     Y        IH   ++ 
Sbjct: 1134 SSESLQSLFSEWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQ 1193

Query: 421  QTTD----GLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIME 475
            Q  +     L+        E   +EK +   +   K+ S TL+ P  I + E +  L+  
Sbjct: 1194 QVDNKFIACLMSTKTEENGEADSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 1253

Query: 476  HDEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIID 518
            + ++L  LG          + + + ++P    ++                + + +R+ ++
Sbjct: 1254 YHKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLE 1313

Query: 519  EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGR
Sbjct: 1314 LLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGR 1373

Query: 578  PTFIKLKLSDIEKL 591
            P+ + L  +DI+ L
Sbjct: 1374 PSMLPL--ADIDHL 1385


>gi|62003157|gb|AAX59030.1| mutL 3 homolog (E.coli) [Homo sapiens]
          Length = 1429

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 25/254 (9%)

Query: 361  SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
            S  + Q      +N +       + D +  +      +     Y        IH   ++ 
Sbjct: 1134 SSESLQSLFSEWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQ 1193

Query: 421  QTTD----GLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIME 475
            Q  +     L+        E   +EK +   +   K+ S TL+ P  I + E +  L+  
Sbjct: 1194 QVDNKFIACLMSTKTEENGEADSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 1253

Query: 476  HDEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIID 518
            + ++L  LG          + + + ++P    ++                + + +R+ ++
Sbjct: 1254 YHKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLE 1313

Query: 519  EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGR
Sbjct: 1314 LLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGR 1373

Query: 578  PTFIKLKLSDIEKL 591
            P+ + L  +DI+ L
Sbjct: 1374 PSMLPL--ADIDHL 1385


>gi|6689930|gb|AAF23905.1| DNA mismatch repair protein [Homo sapiens]
 gi|85567604|gb|AAI12168.1| MutL homolog 3 (E. coli) [Homo sapiens]
 gi|119601619|gb|EAW81213.1| mutL homolog 3 (E. coli), isoform CRA_c [Homo sapiens]
 gi|119601620|gb|EAW81214.1| mutL homolog 3 (E. coli), isoform CRA_c [Homo sapiens]
 gi|313883808|gb|ADR83390.1| mutL homolog 3 (E. coli) [synthetic construct]
          Length = 1429

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 25/254 (9%)

Query: 361  SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
            S  + Q      +N +       + D +  +      +     Y        IH   ++ 
Sbjct: 1134 SSESLQSLFSEWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQ 1193

Query: 421  QTTD----GLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIME 475
            Q  +     L+        E   +EK +   +   K+ S TL+ P  I + E +  L+  
Sbjct: 1194 QVDNKFIACLMSTKTEENGEADSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 1253

Query: 476  HDEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIID 518
            + ++L  LG          + + + ++P    ++                + + +R+ ++
Sbjct: 1254 YHKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLE 1313

Query: 519  EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGR
Sbjct: 1314 LLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGR 1373

Query: 578  PTFIKLKLSDIEKL 591
            P+ + L  +DI+ L
Sbjct: 1374 PSMLPL--ADIDHL 1385


>gi|91992160|ref|NP_055196.2| DNA mismatch repair protein Mlh3 isoform 2 [Homo sapiens]
          Length = 1429

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 25/254 (9%)

Query: 361  SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
            S  + Q      +N +       + D +  +      +     Y        IH   ++ 
Sbjct: 1134 SSESLQSLFSEWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQ 1193

Query: 421  QTTD----GLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIME 475
            Q  +     L+        E   +EK +   +   K+ S TL+ P  I + E +  L+  
Sbjct: 1194 QVDNKFIACLMSTKTEENGEADSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 1253

Query: 476  HDEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIID 518
            + ++L  LG          + + + ++P    ++                + + +R+ ++
Sbjct: 1254 YHKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLE 1313

Query: 519  EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGR
Sbjct: 1314 LLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGR 1373

Query: 578  PTFIKLKLSDIEKL 591
            P+ + L  +DI+ L
Sbjct: 1374 PSMLPL--ADIDHL 1385


>gi|114653980|ref|XP_001158435.1| PREDICTED: mutL homolog 3 isoform 2 [Pan troglodytes]
 gi|114653982|ref|XP_001158557.1| PREDICTED: DNA mismatch repair protein Mlh3 isoform 4 [Pan
           troglodytes]
          Length = 1427

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 99/254 (38%), Gaps = 25/254 (9%)

Query: 361  SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
            S  + Q      +N +       + D +  +      +     Y        IH   ++ 
Sbjct: 1132 SSESLQSLFSEWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQ 1191

Query: 421  QTTD----GLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIME 475
            Q  +     L+        E   +EK +   +   K+ S TL+ P  I + E +  L+  
Sbjct: 1192 QVDNKFIACLMSTKTEENGEADSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 1251

Query: 476  HDEDLHRLGIKAE--RFGPNAIAIREIPAILSKKN---------------IPQLLRDIID 518
            + ++L  LG++        + + + ++P    ++                + + +R+ ++
Sbjct: 1252 YHKNLEDLGLEFAFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLE 1311

Query: 519  EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGR
Sbjct: 1312 LLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGR 1371

Query: 578  PTFIKLKLSDIEKL 591
            P+ + L  +DI+ L
Sbjct: 1372 PSMLPL--ADIDHL 1383


>gi|156843763|ref|XP_001644947.1| hypothetical protein Kpol_1025p8 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156115601|gb|EDO17089.1| hypothetical protein Kpol_1025p8 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 633

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 145/368 (39%), Gaps = 31/368 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I+ L++   ++I A   +  P  AIKE+I+NS+DA +  +   I    GG  +  + D
Sbjct: 1   MTIQILNKDDQSKIVATSYVISPFTAIKEIIDNSIDAGAHNIRIEIDSKTGGCEYISVKD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAV----SHLTLMSRP 112
           +G G+ + +IP+   R  TSKI+   +     T GFRG AL SI  +      L   S+ 
Sbjct: 61  DGCGIDAADIPLVCIRGSTSKITQFSEIQTAKTLGFRGNALNSISNIMGSKGSLEFQSKT 120

Query: 113 PQNNTGAQIAISGE---KISSVRPVAMNPGTIVEVRDLFFTIPARL-NFLKSEQVETNLI 168
             +  G +  +      K   V  +    GT V +R L  ++  R   + K  +   + +
Sbjct: 121 SGDIIGQRWLVDKNGVVKDEKVSKINCAIGTTVIIRKLLASLHVRYIEYSKHSKTTIDDV 180

Query: 169 TDVIRRMAIAYPKVSFTFSTIK--------SNRYKMNFQSTNGNFPERISQVIGEDFINN 220
             ++   +  + ++ F F  +           R ++  +    N  + +  +  +    +
Sbjct: 181 KTLLHHYSTIFDEIRFQFFMVSLNRDGSVLERRLQVTTEPGISNCRKILKLIGIKAINKD 240

Query: 221 AV---ELNEKSNEITLQGYTGIPTFNRG----NANQFYVFINGRTVQDKFIL-STIRTAY 272
            +   E    +N+I++      P              ++ +N R +  K      +  A 
Sbjct: 241 ILIVKENVRLNNDISVNLILPNPECANEILLSKKKCKFLTVNNRIMSLKLSFGKDLTKAL 300

Query: 273 AETIPLGRY--PVVVLL-LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
                   Y  P   L+   IDP  +D+N+ P K+ I  R   +I + +   I+  I + 
Sbjct: 301 NSAYKDSNYTLPKCWLVSFTIDPNVIDINIEPEKNDILLRQSGMIIDELKILIKSFIEEW 360

Query: 330 GISTSSVL 337
             S     
Sbjct: 361 AASGEDTA 368


>gi|91992162|ref|NP_001035197.1| DNA mismatch repair protein Mlh3 isoform 1 [Homo sapiens]
 gi|317373417|sp|Q9UHC1|MLH3_HUMAN RecName: Full=DNA mismatch repair protein Mlh3; AltName: Full=MutL
           protein homolog 3
          Length = 1453

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1219 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1278

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG          + + + ++P    ++                + + +R+ ++ 
Sbjct: 1279 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLEL 1338

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1339 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 1398

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1399 SMLPL--ADIDHL 1409


>gi|119601618|gb|EAW81212.1| mutL homolog 3 (E. coli), isoform CRA_b [Homo sapiens]
 gi|119601621|gb|EAW81215.1| mutL homolog 3 (E. coli), isoform CRA_b [Homo sapiens]
          Length = 1453

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1219 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1278

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG          + + + ++P    ++                + + +R+ ++ 
Sbjct: 1279 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLEL 1338

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1339 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 1398

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1399 SMLPL--ADIDHL 1409


>gi|7209866|dbj|BAA92353.1| DNA mismatch repair protein MLH3 [Homo sapiens]
          Length = 1453

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1219 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1278

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG          + + + ++P    ++                + + +R+ ++ 
Sbjct: 1279 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLEL 1338

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1339 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 1398

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1399 SMLPL--ADIDHL 1409


>gi|114653974|ref|XP_001158381.1| PREDICTED: mutL homolog 3 isoform 1 [Pan troglodytes]
 gi|114653976|ref|XP_001158500.1| PREDICTED: mutL homolog 3 isoform 3 [Pan troglodytes]
 gi|114653978|ref|XP_001158621.1| PREDICTED: DNA mismatch repair protein Mlh3 isoform 5 [Pan
           troglodytes]
          Length = 1451

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRASAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGPTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1217 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1276

Query: 477  DEDLHRLGIKAE--RFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG++        + + + ++P    ++                + + +R+ ++ 
Sbjct: 1277 HKNLEDLGLEFAFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLEL 1336

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1337 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 1396

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1397 SMLPL--ADIDHL 1407


>gi|2281332|gb|AAC45507.1| mismatch repair protein homolog [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 223

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 1/221 (0%)

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
             N  +      S      + ++  + S+ + +      AQ+H  Y++ Q+ +GL +VDQ
Sbjct: 4   SSNEFTDRTPKNSVSNFGVDFDNIEKLSQQSTFPQLEYLAQLHATYLLCQSKEGLYLVDQ 63

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG 491
           HAA ER+ +E  +       +  Q LL P +  L   +  ++ E  + LH  G+  E +G
Sbjct: 64  HAAQERIKYEYWKDKIGEVSMEQQILLAPYLFTLPTNDFIVLAEKKDLLHEAGVFLEEYG 123

Query: 492 PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRK 551
            N   +RE P  L +  I + + ++ID I+ SS  ++L+    ++ A +AC  SI++   
Sbjct: 124 ENQFILREHPIWLKETEIEKSINEMIDIIL-SSKEFSLKKYRHDLAAMVACKSSIKANHP 182

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
           + +     LLRE+    N   C HGRPT +     DI+K+F
Sbjct: 183 LDAESARALLRELSTCKNPYSCAHGRPTIVHFSGDDIQKMF 223


>gi|146100947|ref|XP_001468986.1| mismatch repair protein; mismatch repair protein PMS1 [Leishmania
           infantum]
 gi|134073355|emb|CAM72081.1| mismatch repair protein [Leishmania infantum JPCM5]
          Length = 840

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 146/386 (37%), Gaps = 61/386 (15%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L      ++AAG++I   +  +KEL EN+LDA+++ V   +   G     + D+G G
Sbjct: 2   ITRLDGASARKLAAGQVITDLTSVVKELSENALDAKATTVTIRLINYGLDEIVVDDDGTG 61

Query: 63  MT--------SEEI------PMAVQR--------------HCTSKISDDFSNIH------ 88
           ++        + E+      P+   R              H T+K   D           
Sbjct: 62  ISMGQLVNTAANELLDGASTPLLSSRATTKQRRHDRDGCTHATAKDEADEGQTSQAESAC 121

Query: 89  -----------TFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGAQIAISGEKISSVRPVAM 136
                      + GFRGEAL S+  VS +T+ +R         +I+      +S      
Sbjct: 122 VAEDEGDSSDPSLGFRGEALHSLAHVSDVTVETRSADTGALTVRISYDHTSHTSRLEAVR 181

Query: 137 ---NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI--- 189
                GT V  R LF  +P R   ++K+ + + + +   +++ A+++P +          
Sbjct: 182 LRDVCGTTVTARHLFKHLPVRHREYVKNCRKQLSKVASTMKQYAVSHPHIRLLVQHQETP 241

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA-N 248
            S    +   + +G+    +++  G    ++   ++   +  T  G     +     +  
Sbjct: 242 NSAVVTLVSLTGSGDATRSVTEAYGGLCTSHMQRVHWSLSFGTFTGLVSKVSGGGRLSGG 301

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLLLEIDPR-QVDVNVHPAKS 304
                ++GR V    +   +  A+ + +P      +    L ++ +   Q DVN+ P K 
Sbjct: 302 HQVFALDGRLVDLPRLGKALNDAFIQCLPNASQRLHVAFFLQVKTNASLQYDVNLTPNKR 361

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKG 330
            +       + + +    Q A+ + G
Sbjct: 362 KVLLAQEERLADELY---QCALQEFG 384



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 6/187 (3%)

Query: 407 GIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL 465
                Q +  +II+   +G + +VDQHA+ E+  +E++ + + +T    Q L+ P  + +
Sbjct: 651 MRVIGQFNHGFIIAVLPNGDVFVVDQHASDEKYNYERLVRAYEATP---QPLVMPVSVAM 707

Query: 466 LEGECALIMEHDEDLHRLGIKAERFGPNA-IAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
              E  L +EH   L + G K  R   +  + +  +P +         + +++ +++   
Sbjct: 708 SAHEVDLAVEHKLTLQQHGFKVSRGSDDTKLLVYSLPVLPYDVVSASDVMELVQQLVQYG 767

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL- 583
           T       + + +AT AC  SI  G  +    M  +L  + +      C HGRPT   L 
Sbjct: 768 TITKPLRAVWHSMATKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGRPTLRLLC 827

Query: 584 KLSDIEK 590
            ++D+++
Sbjct: 828 SIADLQR 834


>gi|302509070|ref|XP_003016495.1| hypothetical protein ARB_04784 [Arthroderma benhamiae CBS 112371]
 gi|291180065|gb|EFE35850.1| hypothetical protein ARB_04784 [Arthroderma benhamiae CBS 112371]
          Length = 1020

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 146/394 (37%), Gaps = 30/394 (7%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPS 99
           V+      G    ++ DNG G++         +H TSK+S   D +++ TFGFRGEAL S
Sbjct: 6   VDVRFKNNGLDLIEVQDNGHGISPNNYESLALKHYTSKLSTFADLTSLQTFGFRGEALSS 65

Query: 100 IGAVSHLTLMSRPPQNNTGAQ--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF 157
           + AVS+LT+++   Q    A         K+ S + VA   GT V + +LF  +P R   
Sbjct: 66  LCAVSNLTVVTAEAQQAPRASKLDFEFSGKLKSTQVVAGQKGTTVSIENLFKPLPVRRRE 125

Query: 158 -LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIG 214
             K+ + E   +  ++   A     V F           +   +T  N    E IS V G
Sbjct: 126 LEKNVKREYGKVIALLHAYACISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYG 185

Query: 215 EDFINNAVE----------------LNEKSNEITLQGYTGIPTF--NRGNANQFYVFING 256
              +   +                  ++ SN+I + G+   P F   R   ++   F+N 
Sbjct: 186 TKTLLALMPLDLNLEYEPSTVAKRFSSQASNKIFVHGHISKPVFGEGRQTPDRQMFFVNS 245

Query: 257 RTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN 316
           R      I       Y     L + P +    E+D    DVNV P K  I   +   +  
Sbjct: 246 RPCGLPQIAKAFNEVYKSF-NLSQSPFIFANFEMDTSAYDVNVSPDKRTILLHDAGALIE 304

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
            +    + ++ +   +    +    ++   Q             S+  TQ+K        
Sbjct: 305 SL----KASLTELFENEDQTVPVSQLTFSKQSQLTPNRGQTPPASVGATQDKPEEPPGNA 360

Query: 377 STNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
             +  L  DD     + +P + S+++   +    
Sbjct: 361 VYSQELGQDDTVEENNPEPTQTSQSSIRGVLQRL 394



 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 45/206 (21%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
             Q  D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+++  
Sbjct: 777 AEQEQDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVKPKTLDLTAVEEEVIIDNLA 833

Query: 479 DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLL-------------- 513
            L + G   E         G     I  +P     +   +++ +L+              
Sbjct: 834 ALEKNGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFDTRDLEELIVLLSEAPQQSQNNL 892

Query: 514 ----RDIIDEIIDSSTTY------------TLQDRIENILATMACYGSIRSGRKMQSIEM 557
               RD +D   +                     ++  + A  AC  SI  G+ +   +M
Sbjct: 893 GKRARDELDSDAEHIEPPGVASSPFSDYLVPRPSKVRKMFAMRACRSSIMIGKNLTHRQM 952

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
             +++ M        C HGRPT   L
Sbjct: 953 ETVVKHMGTIDKPWNCPHGRPTMRHL 978


>gi|197100348|ref|NP_001124874.1| DNA mismatch repair protein Mlh3 [Pongo abelii]
 gi|55726207|emb|CAH89876.1| hypothetical protein [Pongo abelii]
          Length = 1273

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 141/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDICSRFCQIYGLGKSQKLREISFKYKEFELGGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI----------------------RTAYAE 274
                    N N  ++F+N R V    +   I                       ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGSTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F++   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQDWDTLLFCIQEGVKMFLKQ 350



 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 443  MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG--IKAERFGPNAIAIREI 500
                    +      LT   +D++     L   + ++L  LG          + + + ++
Sbjct: 1067 FIAPTEDIQAACTKDLTTVAVDVVLENDYLFRCYHKNLEDLGLEFVFPDSSDSLVLVGKV 1126

Query: 501  PAILSKKN---------------IPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYG 544
            P    ++                + + +R+ ++ +  +     TL   ++ +LA+ AC+G
Sbjct: 1127 PLCFVEREANELRRGRSTVTKSIVEEFIREQVELLQTTGGIQGTLPLTVQKVLASQACHG 1186

Query: 545  SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            +I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1187 AIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRPSMLPL--ADIDHL 1231


>gi|332223313|ref|XP_003260811.1| PREDICTED: DNA mismatch repair protein Mlh3 isoform 2 [Nomascus
           leucogenys]
          Length = 1429

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLVDFLLRKESIICKPKNGSTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 436  ERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG--IKAERFGP 492
            E   +EK +   +   K+ S TL+ P  I + E +  L+  + ++L  LG          
Sbjct: 1213 EADSYEKHQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCYHKNLEDLGLEFVFPDTSD 1272

Query: 493  NAIAIREIPAILSKKN---------------IPQLLRDIIDEIIDSSTTY-TLQDRIENI 536
            + + + ++P    ++                + + +R+ ++ +  +     TL   ++ +
Sbjct: 1273 SLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQVELLQTTGGIQGTLPLTVQKV 1332

Query: 537  LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
            LA+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 1333 LASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRPSMLPL--ADIDHL 1385


>gi|332223311|ref|XP_003260810.1| PREDICTED: DNA mismatch repair protein Mlh3 isoform 1 [Nomascus
           leucogenys]
          Length = 1453

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 142/354 (40%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K            + GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRPSAGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  E  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKEFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTV----------------------QDKFILSTIRTAYAE 274
                    N N  ++F+N R V                      ++      + ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLVDFLLRKESIICKPKNGSTSRQMNSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1219 LVLVDQHAAHERIRLEQLIIDSYEKHQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1278

Query: 477  DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG          + + + ++P    ++                + + +R+ ++ 
Sbjct: 1279 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQVEL 1338

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1339 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 1398

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1399 SMLPL--ADIDHL 1409


>gi|322495411|emb|CBZ30715.1| mismatch repair protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 840

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 77/425 (18%), Positives = 157/425 (36%), Gaps = 63/425 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L      ++AAG++I   +  +KEL EN+LDA+++ V   +   G     + D+G G
Sbjct: 2   ITRLDGASARKLAAGQVITDLTSVVKELSENALDAKATTVTIRLINYGLDEIVVDDDGTG 61

Query: 63  MTSEEI--------------PMAVQRHCTSKISDDFSNIH-------------------- 88
           ++  ++              P+   R  T +   D  +                      
Sbjct: 62  ISMGQLVDTATNELLDGASTPLLSSRATTKQRRHDLDSCSHATATNEANEGHTNQAESAC 121

Query: 89  -----------TFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGAQIAISGEKISSVRPVAM 136
                      + GFRGEAL S+  VS +T+ +R         +I+      +S      
Sbjct: 122 MAPDEGDSSDPSLGFRGEALHSLAHVSDVTIETRSADTGALTVRISYDHISHTSRLEAVQ 181

Query: 137 ---NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI--- 189
                GT V  R LF  +P R   ++K+ + + +  T  +++ A+++P +          
Sbjct: 182 LRDVCGTTVTARHLFKHLPVRHREYVKNCRKQLSKATSTMKQYAVSHPHIRLLMQHQETP 241

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA-N 248
            S    +   + +G+    +++  G    ++   +N   +  T  G     +     + +
Sbjct: 242 NSAVVTLVSLTGSGDATRSVTEAYGGLCTSHMQRVNWNLSFGTFTGLVSKVSGGGRLSGD 301

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLLLEIDP-RQVDVNVHPAKS 304
                ++GR V    +   +  A+ + +P      +    L ++ +   Q DVN+ P K 
Sbjct: 302 HQVFALDGRLVDLPRLGKALNDAFTQCLPNASQRLHVAFFLQVKTNALLQYDVNLAPNKR 361

Query: 305 YIRFRNP----TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-THLPKYA 359
            +           +    +Q    A+ +  +     +++  ++        K T  P  A
Sbjct: 362 KVLLAQEERLADEVYQCALQEFGSALQEVDLDRGQRIAQTRVADVRATELTKLTRTPVSA 421

Query: 360 TSLTN 364
           TSLT 
Sbjct: 422 TSLTQ 426



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 84/192 (43%), Gaps = 6/192 (3%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLL 458
               ++      Q +  +II+   +G + +VDQHA+ E+  +E++ + + +T    Q L+
Sbjct: 644 NKNSFKEMRVIGQFNHGFIIAVLPNGDVFVVDQHASDEKYNYERLVRAYEATP---QPLV 700

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA-IAIREIPAILSKKNIPQLLRDII 517
            P  + +   E  L +EH   L   G K  R   +  + +  +P +         + +++
Sbjct: 701 MPVPVAMSAHEVDLAVEHKLALQHHGFKVSRGSDDTKLLVYSLPVLPYDVVSASDVMELV 760

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            +++   T       + + +AT AC  SI  G  +    M  +L  + +      C HGR
Sbjct: 761 QQLVQYGTITKPLRAVWHSMATKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGR 820

Query: 578 PTFIKL-KLSDI 588
           PT   L  ++D+
Sbjct: 821 PTLRLLCNIADL 832


>gi|326470128|gb|EGD94137.1| DNA mismatch repair protein MutL [Trichophyton tonsurans CBS
           112818]
          Length = 726

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 35/390 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E  +  I +   +   S  +KEL++++LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPIVALEEPAVRAIGSTSALSDSSSVVKELLDSALDAGATSIFLEISHNTLDIIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+   +  +A +R+ TSKI   +D  N+   + GFRG+AL  I  +SH + + +R  + 
Sbjct: 61  SGILPSDRSLACKRNYTSKIQTKEDLKNVGGKSLGFRGQALARIAEMSHAVHITTRVLEE 120

Query: 116 NTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
                       +  S  P +   GT V V +   ++P R     K        I  +++
Sbjct: 121 QVARTVKFGRDGEPISETPASHPIGTTVRVCNFLQSLPVRRQEAEKKSTKSILAIKKLLQ 180

Query: 174 RMAIAYPKVSFTFSTIK-SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN--- 229
             AIA PK   +   +K   +  +   S + +  + ISQ+IG   I++ + LN       
Sbjct: 181 GYAIARPKTRLSMRLLKSKEQDWIYAPSPSPSARDAISQIIGSTVISSCISLNSCHPVTR 240

Query: 230 ---------------EITLQGYTGIPTFNRGNANQ--FYVFINGRT-VQDKFILSTIRTA 271
                           I +      P   + N N    +V ++ R  +  +     +   
Sbjct: 241 GRDSSDSVIEGHDTLTIHVSVVVPKPAAGKFNINHKGQFVIVDTRPLLTCRGFGKEVFKL 300

Query: 272 YAETIPLG------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           +               P + L L+  P   D N+ P+K  I F +   + + I       
Sbjct: 301 FKSYYKTAVDSTRLEDPFMFLSLDCPPGIYDANIEPSKDDIVFEDNRAVLHIIESVFMDI 360

Query: 326 INKKGISTSSVLSKKMISSFHQDNAPKTHL 355
            + +  + +     +  +    D +     
Sbjct: 361 YSPETSTITPTPDTRQSNQLTVDISSPAST 390


>gi|46108566|ref|XP_381341.1| hypothetical protein FG01165.1 [Gibberella zeae PH-1]
          Length = 937

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 156/424 (36%), Gaps = 34/424 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L     +++ +   +  P   IKEL++NS+D+ ++ +E  IA       Q+ DNG
Sbjct: 1   MSISQLPPSSAHRLRSSHQLPDPLSVIKELVDNSIDSGATSIEITIAPNTVDKIQVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  E+      R  TSKI   D+       T GFRGEAL S    + + + +R  Q+ 
Sbjct: 61  SGIQIEDFRFLGCRSHTSKIRNYDELHQNGGKTLGFRGEALASATETAAIKITTRTAQDP 120

Query: 117 TGAQIAISGEK--ISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
             + + +  +   IS  +PV+   GT V+  +LF     R    +K+ +     I  ++ 
Sbjct: 121 IASLLMLKAKTGGISKKQPVSGTIGTTVQATNLFDKFTVRKQNAIKTSRRSLVEIQRLLE 180

Query: 174 RMAIAYPK--VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN-- 229
             AIA P   +SF  S+  +  +  +      +  E I+Q+ G       VE++  SN  
Sbjct: 181 SYAIAIPHLKISFKVSSPSTQSWSYSPCPP-SSTQEAITQIFGHTLAAQLVEVSSDSNVE 239

Query: 230 ---------EITLQGYTGIPTFNRGNANQFYVFI--NGRTVQDKFILSTIRTAYAETIPL 278
                     + +      P  +         FI  + R +           +  ++   
Sbjct: 240 CGSTGVQLGTLRITALLPRPGSDVQVIKGKGAFISVDSRPISSIRSTGKKLVSVFKSSIS 299

Query: 279 GRY-----------PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
             +           P + + ++  P   D NV   K  + F N   + +           
Sbjct: 300 KIFGSPDSSRAPANPFLQISIQCPPGSYDPNVSQLKDEVMFDNEPAVISCFQALCDAIYV 359

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           KK   +  + +K M +               A       +     E+  S +DL+   + 
Sbjct: 360 KKVPGSKGMQNKTMPAENTPTPTAGALKAPKANGGEGRFQNRNGHESLSSDHDLIEPLND 419

Query: 388 TYSE 391
            +  
Sbjct: 420 EFER 423


>gi|20334706|gb|AAM16278.1| MutL-like protein 3 [Mus musculus]
          Length = 338

 Score =  179 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 132/340 (38%), Gaps = 33/340 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR LS+ +  ++ +G  I      ++EL  NS+DAE++ V   +        Q+ DNG G
Sbjct: 2   IRCLSDDVKTKLRSGLAISSLGQCVEELTLNSIDAEATCVAIRV-NMETFQVQVIDNGLG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           M  +++     R+ TSK     D  N   +GFRGEAL SI  ++  + + S+        
Sbjct: 61  MAGDDVEKVGNRYFTSKCHSVRDLENPAFYGFRGEALASIADMAGAVEISSKKNTTLKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K  +     +     GT V V +LF+  P R   +   ++E   +   +  ++
Sbjct: 121 VKMFQNGKALATHEADLTRPSVGTTVTVYNLFYQFPVRRKSMD-PRLEFEKVRQRVEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E+  K  E    GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDICSRFCQIYGLGKSQKLREIRFKYKEFEFSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR-----------------TAYAETIPLG 279
                    N N  ++F+N R V    +   I                  +    + P  
Sbjct: 239 ISSE--AHYNKNMQFLFVNRRLVLRTKLHKLIDFLLRKESIICRPKNGSASRQMNSSPRH 296

Query: 280 R-----YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           R     + + V+ ++    + DV + PAK+ I  ++   +
Sbjct: 297 RSASELHGIYVINVQCPFCEYDVCIEPAKTLIELQSWDTV 336


>gi|296421050|ref|XP_002840079.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636291|emb|CAZ84270.1| unnamed protein product [Tuber melanosporum]
          Length = 608

 Score =  179 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 158/420 (37%), Gaps = 47/420 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L +  +  + +G+++  P   IKEL++NSLDA ++ +   ++       Q+ DNG
Sbjct: 1   MGIQALPDTAVRALGSGQVLTDPVSLIKELLDNSLDALATAISIEVSQNTLDVLQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRG-EALPSIGAVSHLTLMSRPPQNNT 117
            G+ +E+      RHCTSKI+D  +  +  + GFRG     +      L + +       
Sbjct: 61  HGIPTEDREFVAMRHCTSKITDFEEIQDCRSLGFRGEALASAAELAGGLVITTMVEGEKV 120

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRM 175
                     K+++ +PV    GT V V D F  +P R    +K  Q   + +  +++R 
Sbjct: 121 AMACTCDRVGKVTARKPVGAMKGTTVRVTDFFKFLPVRRENAIKGAQKSLSKVRTLLQRY 180

Query: 176 AIAYPKVSFTFSTIKSNRYKMNF--------QSTNGNFPERISQVIGEDFINNAVELNEK 227
            +++P   F+   +   +              + + +  E + + +G++ +     +N +
Sbjct: 181 YLSHPACRFSLRVLAPPQKSKAAGGQSEDIVYAPSKSVSEAVMKAVGKEIVATCQWINTE 240

Query: 228 S---------NEITLQGYTGIPTF--NRGNANQFYV---FINGRTVQD-KFILSTIRTAY 272
                      +I ++ +   P                 F++ R V   +  L  I + Y
Sbjct: 241 HEEVTDGSGEQKIGIEAFMPKPGSDPAIICRKPQCTNFVFVDSRPVSCARGTLKQILSLY 300

Query: 273 AETIPLG------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
              +           P + L L   P   D N+ PAK  + F +   +   +    +   
Sbjct: 301 KSYLKSALPDSAISDPFLYLNLRCPPGAYDPNIEPAKDDVMFFHADRVIGAVEVIFKGLY 360

Query: 327 NKKGISTSSVLSKKMISSFH-------------QDNAPKTHLPKYATSLTNTQEKLFLQE 373
            +    +S   S     S               +D  P T  P  A  +   +E++  Q+
Sbjct: 361 GELKTKSSPGGSGGKGKSVEMMTGGFELLLARKRDPKPGTTKPPEAPEIDEDEEEMAAQQ 420


>gi|72547643|ref|XP_843271.1| mismatch repair protein [Leishmania major strain Friedlin]
 gi|323363786|emb|CBZ12792.1| mismatch repair protein [Leishmania major strain Friedlin]
          Length = 840

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 158/425 (37%), Gaps = 63/425 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L      ++AAG++I   +  +KEL EN+LDA+++ V   +   G     + D+G G
Sbjct: 2   ITRLDGASARKLAAGQVITDLTSVVKELSENALDAKATTVTIRLINYGLDEIVVDDDGTG 61

Query: 63  MT--------SEEI------PMAVQR--------------HCTSKISDDFSNIH------ 88
           ++        + E+      P+   R              H T+K   D           
Sbjct: 62  ISMGQLVNTAANELLDGASTPLLSSRATTKQRRHDLDGCTHATAKDEADEGRTSQDESAC 121

Query: 89  -----------TFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGAQIAISGEKISSVRPVAM 136
                      + GFRGEAL S+  +S +T+ +R         +I+      +S      
Sbjct: 122 VAEAEGDSSDPSLGFRGEALHSLAHMSDVTVETRSADTGALTVRISYDHTSHTSRLEAVR 181

Query: 137 ---NPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI--- 189
                GT V  R LF   P R   ++K+ + + +  T  +++ A+++P +          
Sbjct: 182 LRDVCGTTVTARHLFKHFPVRHREYVKNCRKQLSKATSTMKQYAVSHPHIRLLMQHQETP 241

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI-PTFNRGNAN 248
            S    +   + +G+    +++  G    ++   ++   +  T  G         R +++
Sbjct: 242 NSAVVTLVSLTGSGDATRSVTEAYGGLCTSHMQRVHWSLSFGTFTGLVSKVSGGGRLSSD 301

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLLLEIDPR-QVDVNVHPAKS 304
                ++GR V    +   +  A+ + +P      Y    L ++ +   Q DVN+ P K 
Sbjct: 302 HQVFALDGRLVDLPRLGKALNDAFIQCLPNASQRLYVAFFLQVKRNASLQYDVNLTPNKR 361

Query: 305 YIRFRNP----TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK-THLPKYA 359
            +           +    +Q    A+ +  +     +++   +        + T  P  A
Sbjct: 362 KVLLAQEERLADEVYQCALQEFGSALQEVDLDRGQRIAQTRAADVRATELTRLTRTPVSA 421

Query: 360 TSLTN 364
           TSLT 
Sbjct: 422 TSLTQ 426



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 5/227 (2%)

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
               +       +      T D   S        +D         ++      Q +  +I
Sbjct: 603 REPFSADPADAVVLSASTQTCDRPSSRTLGAQTADDLNHYFTKNSFKEMRVIGQFNHGFI 662

Query: 419 ISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           I+   +G + +VDQHA+ E+  +E++ + + +T    Q L+ P  + +   E  L +EH 
Sbjct: 663 IAVLPNGDVFVVDQHASDEKYNYERLVRAYEATP---QPLVMPVSVAMSAHEVDLAVEHK 719

Query: 478 EDLHRLGIKAERFGPNA-IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
             L   G K  R   +  + +  +P +         + +++ +++   T       + + 
Sbjct: 720 LALQHHGFKVSRGSDDTKLLVYSLPVLPYDVVSASDVMELVQQLVQYGTITKPLRAVWHS 779

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +AT AC  SI  G  +    M  +L  + +      C HGRPT   L
Sbjct: 780 MATKACRSSIMIGTPLTVKRMKLILERLSQLDQPWNCPHGRPTLRLL 826


>gi|147794209|emb|CAN77833.1| hypothetical protein VITISV_024732 [Vitis vinifera]
          Length = 494

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/108 (42%), Positives = 73/108 (67%), Gaps = 2/108 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
            +L + ++N IAAGE+I+RP  A+KEL+ENSL+  S+ +  ++  GG    Q++D+G G+
Sbjct: 274 HRLDQSVVNCIAAGEVIQRPVSAVKELVENSLNTYSTSINVIVKDGGLKLIQVSDDGHGI 333

Query: 64  TSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLM 109
             E++P+  +RH TSK+S  +D  +I   GFRGEAL S+  V H+T+ 
Sbjct: 334 RYEDLPILCKRHTTSKLSEFEDLQSIKLMGFRGEALASMTYVGHVTVT 381


>gi|109084340|ref|XP_001096911.1| PREDICTED: DNA mismatch repair protein Mlh3 isoform 2 [Macaca
           mulatta]
          Length = 1456

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 141/354 (39%), Gaps = 33/354 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS ++  ++ +G  I      ++EL  NS+DAE+  V   +        Q+ DNGFG
Sbjct: 2   IKCLSVEVQAKLRSGLAISSLGQCVEELALNSIDAEAKCVAVRV-NMETFQVQVIDNGFG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGA 119
           M S+++     R+ TSK     D  N   +GFRGEAL +I  + S + + S+  +     
Sbjct: 61  MGSDDVEKVGNRYFTSKCHSVQDLENPRFYGFRGEALANIADMASAVEISSKKNRTMKTF 120

Query: 120 QIAISGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K        +     GT V V +LF+ +P R   +   ++E   +   I  ++
Sbjct: 121 VKLFQSGKALKACEADVTRPSGGTTVTVYNLFYQLPVRRKCMD-PRLEFEKVRQRIEALS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P +SF+     S    +       +   R  Q+ G        E++ K  +  L GY
Sbjct: 180 LMHPSISFSLRNDVSGSMVLQL-PKTKDVCSRFCQIYGLGKSQKLREISFKYKQFELSGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTI----------------------RTAYAE 274
                    N N  ++F+N R V    +   I                       ++   
Sbjct: 239 ISSE--AHYNKNMQFLFVNKRLVLRTKLHKLIDFLLRKESIICKPKNGSTSRQMSSSLRH 296

Query: 275 TIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
                 Y + V+ ++    + DV + PAK+ I F+N   +   I + ++  + +
Sbjct: 297 RSTPELYGIYVINVQCQFCEYDVCMEPAKTLIEFQNWDTLLFCIQEGVKMFLKQ 350



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 29/193 (15%)

Query: 426  LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
            LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 1222 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 1281

Query: 477  DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
             ++L  LG++        + + + ++P    ++                + + +R+ ++ 
Sbjct: 1282 HKNLEDLGLELVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQVEL 1341

Query: 520  IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 1342 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIETLSSCQLPFQCAHGRP 1401

Query: 579  TFIKLKLSDIEKL 591
            + + L  +DI+ L
Sbjct: 1402 SMLPL--ADIDHL 1412


>gi|111308043|gb|AAI21227.1| pms1 protein [Xenopus (Silurana) tropicalis]
          Length = 141

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
             L    I  +++ ++I      +KEL+EN+LDA ++ +E  +   G    ++ DNG G+
Sbjct: 2   HCLPSATIRLLSSSQVITSVVSVVKELVENALDANATSIEIKLENFGFDKIEVRDNGKGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            S++ P+   +H TSKI   DD   + T+GFRGEAL SI +V+ + + ++  +++
Sbjct: 62  KSDDTPVMGVKHYTSKINSHDDLETLETYGFRGEALASICSVAEVHIATKTLEDD 116


>gi|310128480|ref|XP_003120597.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 2,
           partial [Homo sapiens]
          Length = 674

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 27/309 (8%)

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV 103
           +   G    +++DNG G+  E       +H TSKI +  D + + TFGFRGEAL S+ A+
Sbjct: 11  LKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL 70

Query: 104 SHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSE 161
           S +T+ +       G ++      KI    P     GT V V+ LF T+P R   F ++ 
Sbjct: 71  SDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNI 130

Query: 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFIN 219
           + E   +  V+    I    +  + +       +     T G  +  E I  V G+  + 
Sbjct: 131 KKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQ 190

Query: 220 NAVELNE------------------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTV 259
           + +   +                    N   + G+    T   G +  ++ + FIN R  
Sbjct: 191 SLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPC 250

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y       +YP VVL + +D   VD+NV P K  I  +   ++   + 
Sbjct: 251 DPAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLK 309

Query: 320 QSIQKAINK 328
            S+    + 
Sbjct: 310 TSLIGMFDS 318


>gi|194378162|dbj|BAG57831.1| unnamed protein product [Homo sapiens]
          Length = 815

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 27/310 (8%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++DNG G+  E       +H TSKI +  D + + TFGFRGEAL S+ A
Sbjct: 10  KLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCA 69

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKS 160
           +S +T+ +       G ++      KI    P     GT V V+ LF T+P R   F ++
Sbjct: 70  LSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRN 129

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFI 218
            + E   +  V+    I    +  + +       +     T G  +  E I  V G+  +
Sbjct: 130 IKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQL 189

Query: 219 NNAVELNE------------------KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRT 258
            + +   +                    N   + G+    T   G +  ++ + FIN R 
Sbjct: 190 QSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRP 249

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
                +   +   Y       +YP VVL + +D   VD+NV P K  I  +   ++   +
Sbjct: 250 CDPAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVL 308

Query: 319 IQSIQKAINK 328
             S+    + 
Sbjct: 309 KTSLIGMFDS 318



 Score =  149 bits (377), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 135/351 (38%), Gaps = 14/351 (3%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDV 297
           G    +   A+      +   V  +        ++++               + P+  ++
Sbjct: 465 GSHCSSEYAASSPGDRGSQEHVDSQEKAPKTDDSFSDVDCHSNQEDTGCKFRVLPQPTNL 524

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
                 +  RF+   I+ +      +  I +   ++   ++ K+       +   + L K
Sbjct: 525 ---ATPNTKRFKKEEILSSS-DICQKLVITQDMSASQVDVAVKINKKVVPLDFSMSSLAK 580

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
               L +  ++   ++N       +   +   +E ++  +E   T +       Q +  +
Sbjct: 581 RIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFNLGF 639

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           II++  + + IVDQHA  E+  FE ++Q    T +  Q L  P+ ++L     A+++E+ 
Sbjct: 640 IITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLTAPQTLNLTAVNEAVLIENL 696

Query: 478 EDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           E   + G              A  I  +P   +    PQ + ++I  + DS        R
Sbjct: 697 EIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCRPSR 755

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           ++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 756 VKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 806


>gi|156400212|ref|XP_001638894.1| predicted protein [Nematostella vectensis]
 gi|156226018|gb|EDO46831.1| predicted protein [Nematostella vectensis]
          Length = 337

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/340 (21%), Positives = 145/340 (42%), Gaps = 33/340 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   I + + +G  I   + AI EL+ N+LDA +S +   +        Q++DNG G
Sbjct: 2   IRHLDTGIRSHLRSGVAISTLTQAIDELVTNALDAGASCINVHVDIPSF-RVQVSDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
           +T + + +  QR+CTSK     D   + ++GFRGEAL SI  +   L ++++   +    
Sbjct: 61  ITKDNLEILGQRYCTSKCHSLSDLRKLSSYGFRGEALASIRDICGVLEIVTKHSSSYKTY 120

Query: 120 QIAISGEK---ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  K   ++       N GT V + D+F  +P R   L S  ++   +   +  +A
Sbjct: 121 CKLFRSGKPLTVTQSCFPRSNTGTTVTIHDIFSNLPVRRKLLSSV-LDFERVRQRLLSIA 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P+VSF      + +  +  +    +     SQ+ G     +  ++  +     + G+
Sbjct: 180 LIHPEVSFILFNDATFQKCLQTR-KCLSVTSTFSQLFGNLKARSLKDVFSEHKHFKVSGH 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYP-------------- 282
            GI   +  N N  +V+IN R +    I   + +  +++  + + P              
Sbjct: 239 IGIEPHH--NKNLQFVYINSRLLLKTKIHKLLNSMLSKSSFIKQLPSNMSENDVPMRSPP 296

Query: 283 --------VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
                   + ++ +       DV + P+K+ + F++   +
Sbjct: 297 QRSSEKNAIFIINITCPLMVYDVILEPSKTLVEFQDWDGV 336


>gi|296777693|gb|ADH43110.1| DNA mismatch repair protein MutL [uncultured bacterium MID12]
          Length = 97

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 2/95 (2%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
          KI +L E + NQIAAGE+IERP+  +KEL+ENS+DA SS++   I   G    Q+TDNG 
Sbjct: 3  KIIELPEVLANQIAAGEVIERPASVVKELVENSIDAGSSQITIEIEEAGLKKIQVTDNGE 62

Query: 62 GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRG 94
          G+  +++ +++ RH TSKI +  D   I T GFRG
Sbjct: 63 GIAQDDVALSLHRHATSKIKNQADLFRIRTLGFRG 97


>gi|326920823|ref|XP_003206667.1| PREDICTED: DNA mismatch repair protein Mlh3-like [Meleagris
           gallopavo]
          Length = 1234

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 160/401 (39%), Gaps = 38/401 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L+E +  ++ +G  +      ++EL+ NS+DA+++ V   +        Q+ DNG G
Sbjct: 2   IKHLAEDVQARLRSGVAVTSLGQCVEELVFNSIDAKATCVAVRVDLEAFK-IQVVDNGSG 60

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVS----HLTLMSRPPQNN 116
           M  E++    +R+ TSK S   D   +  +GFRGEAL SI  ++      +  S+  +  
Sbjct: 61  MGREDLSKMGKRYFTSKCSSVADLEKLTFYGFRGEALASIANMASVVEVSSKSSKTAKTF 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                     ++        + GT V V +LF  +P R   +    +E   +   +  ++
Sbjct: 121 VKLFHNGHALEVCEAELSRPSGGTTVTVCNLFHQLPVRRRCMDPV-LEFERVRQKVEAIS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
           + +P VS +     S    +    T  +   R  Q+ G        E+  KS    + GY
Sbjct: 180 LMHPSVSLSLRNDISCSMVLQLPKTR-DVYSRFCQIYGLGRSQKLREIKHKSGGFEISGY 238

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIR---------------------TAYAET 275
                    N N  ++++N R V    +   I                      ++    
Sbjct: 239 ISTE--GHYNKNMQFLYVNRRLVLKTRLHKLIDFLLRKESVICKAKSVPVSRQGSSSPGR 296

Query: 276 IPLG--RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
           +  G   Y + VL +     + DV++ PAK+ I F+N  ++   + + ++  + ++ +  
Sbjct: 297 LRCGPELYGIFVLNVTCAYSEYDVSLEPAKTLIEFQNWDVLLACVEEGVKMFLKREHLFV 356

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQEN 374
                 + I  F++DN    H      + +   E   +QEN
Sbjct: 357 EP--CCEDIREFNEDNNFCLH--NAPVTKSTLPEDKSIQEN 393



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 138/386 (35%), Gaps = 43/386 (11%)

Query: 238  GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL--LEIDPRQV 295
            G P  +  N++    F     +     ++          P   +P   +     +    V
Sbjct: 828  GDPRDDLRNSDWLQDFDA--LLGKTVYINKTTGLSTYNTPPEEFPAACIKDLTTMAVNVV 885

Query: 296  DVN-----VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
              N      HP +S I        R     + Q    +      S   + M+S +     
Sbjct: 886  SENGFQCRCHPFRSEIVLPFLPRPRKEKTLASQDQRGRASFPGHSESLQSMLSEWDNPVF 945

Query: 351  PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
             +   P+ A  +TN Q      EN       +        +    ++  +    +     
Sbjct: 946  VRC--PEIAVDVTNGQ-----AENLAVKIHNILYPYRFTKDMIHSMQVLQQVDNKFIACV 998

Query: 411  AQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT--------SQTLLTPEI 462
                      +  + LV+VDQHAAHER+  E++  D    +          S ++  P  
Sbjct: 999  INTRNEMDKKEGGNLLVLVDQHAAHERIRLEQLIADSYEKEAAACGKKKFLSSSVSPPLE 1058

Query: 463  IDLLEGECALIMEHDEDLHRLGIKAE-RFGPNAIAIREIPAILSKKNIPQL--------- 512
            I++ E +  ++    ++L  LG++       N I ++++P   +++   +L         
Sbjct: 1059 IEVTEEQRRILWCCYKNLKDLGLELSFPEINNLILVKKVPLCFTEREANELRRKRQPVNK 1118

Query: 513  --LRDIIDEIIDS-----STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
              + + I E ++          T+      +LA+ AC+G+I+    + S E  RL+  + 
Sbjct: 1119 SIVEEFIKEQVELVQTTGGARGTMPLTFLKVLASQACHGAIKFNDSLTSEESCRLMEALS 1178

Query: 566  KNPNSSQCNHGRPTFIKLKLSDIEKL 591
                  QC HGRP+ + L  +DI+ L
Sbjct: 1179 SCQLPFQCAHGRPSMMPL--ADIDHL 1202


>gi|328855348|gb|EGG04475.1| hypothetical protein MELLADRAFT_37375 [Melampsora larici-populina
           98AG31]
          Length = 448

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 104/229 (45%), Gaps = 7/229 (3%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           +    ++++ + +++     A+KEL+ENSLDA ++ VE      G    ++ DNG G+  
Sbjct: 1   IDLNSVHKLTSSQVVIDLQTAVKELLENSLDAGANAVEIRFKEYGLDGLEVIDNGTGIPE 60

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGAQIA 122
           +++      H TSK++  +D   + TFGFRGEAL S+  +S + L +   +    G  + 
Sbjct: 61  QDLATVGLNHHTSKLTTFEDLGQLKTFGFRGEALSSLCGLSKVKLQTSTSETEPRGWAVD 120

Query: 123 ISG-EKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYP 180
                 ++S +  + + GT + + +LF+ +P R   F K  +        +++   +   
Sbjct: 121 FDKLGNVTSKKICSRSRGTTIGISELFYPLPVRQKQFAKDYKKHFAQAQTLLQAYGLIST 180

Query: 181 KVSFTFSTIKSNRYKMNFQST--NGNFPERISQVIGEDFINNAVELNEK 227
            ++           K+    T  NGN  +  S +         ++LN +
Sbjct: 181 SLTLKVYNQPGKGGKVAQFQTRSNGNLRQNFSDIFTAKAAATVIDLNLE 229



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 12/185 (6%)

Query: 403 HYQLGIACAQIHQNYIISQ-TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
            +       Q +  +II     + ++IVDQHA+ E+  FE++++    TK++ Q LLTP 
Sbjct: 259 DFANMKIIGQFNLGFIIVGLGEEDVLIVDQHASDEKYNFERLQR---DTKLSGQRLLTPR 315

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDI 516
            +DL   E    MEH + L   G           G   + +   P        P  +   
Sbjct: 316 TLDLPAAEELTAMEHRDLLEMNGFGILIDEDAPVGQR-VKLVAQPVSRDTIWGPSGMSFC 374

Query: 517 IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHG 576
           +  +  +        +   + A+ AC  S+  G  + + +M  +L  M        C HG
Sbjct: 375 LCSL--TGAPPLRPSKTRKMFASRACRSSVMIGDSLTTGQMRSILDHMGMMEEPWACPHG 432

Query: 577 RPTFI 581
           RPT  
Sbjct: 433 RPTMR 437


>gi|301015759|pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
 gi|301015760|pdb|3GAB|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
 gi|301015761|pdb|3GAB|C Chain C, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
 gi|301015762|pdb|3GAB|D Chain D, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
 gi|301015825|pdb|3KDG|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
           Ii
 gi|301015826|pdb|3KDG|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form
           Ii
 gi|301015827|pdb|3KDK|A Chain A, Structure Of The C-Terminal Domain Of Bacillus Subtilis
           Mutl Bound To Zn2+
 gi|301015828|pdb|3KDK|B Chain B, Structure Of The C-Terminal Domain Of Bacillus Subtilis
           Mutl Bound To Zn2+
          Length = 197

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 1/188 (0%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q+H  YI++Q  +GL I+DQHAA ER+ +E  R+     +   Q ++ P      
Sbjct: 9   MYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYS 68

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTT 526
             E  +I +H ++L  +G+  E FG N+  +R  PA   K    +L+ +II +++DS   
Sbjct: 69  TNEALIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNI 128

Query: 527 YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
             ++   E     M+C GSI++ R +++ E+  LL ++    +   C HGRP  I     
Sbjct: 129 D-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTY 187

Query: 587 DIEKLFGR 594
           ++EK+F R
Sbjct: 188 EMEKMFKR 195


>gi|74706071|sp|O95744|PM2P2_HUMAN RecName: Full=Putative postmeiotic segregation increased 2-like
           protein 2; AltName: Full=Postmeiotic segregation
           increased 2-like protein 14; AltName: Full=Postmeiotic
           segregation increased protein 4; AltName: Full=Putative
           postmeiotic segregation increased 2 pseudogene 2
 gi|4239952|dbj|BAA74754.1| PMS2L14 [Homo sapiens]
          Length = 297

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+K+++ NSLDA ++ ++  +   G    +++ NG G
Sbjct: 77  IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 136

Query: 63  MTSEEIP---MAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           +  E      ++  +H TSKI +  D + + TFGF+G+AL S+ A+S +T+ +       
Sbjct: 137 VEEENFEGLSLSALKHHTSKIREFADLTRVETFGFQGKALSSLCALSDVTISTCHVSAKV 196

Query: 118 GAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRM 175
           G ++    + KI    P     GT V V+ LF T+P R   F ++ + +         R 
Sbjct: 197 GTRLVFDHDGKIIKKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRNIKKKRACFPFAFCRD 256

Query: 176 AIA 178
              
Sbjct: 257 CQF 259


>gi|308806882|ref|XP_003080752.1| suppressor of forked protein family protein / SUF family protein
           (ISS) [Ostreococcus tauri]
 gi|116059213|emb|CAL54920.1| suppressor of forked protein family protein / SUF family protein
           (ISS) [Ostreococcus tauri]
          Length = 1661

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 212/641 (33%), Gaps = 89/641 (13%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQ--ITDNGFGMTSE---EIP 69
           A+  +I+  + A+K    N+LDA +  +   +  G +        D+G GMT E   E+ 
Sbjct: 13  ASTRLIQIVARAVK----NALDARARTISVEV--GVRDVITMLCADDGEGMTRESARELV 66

Query: 70  MAV------QRHCTSKISDDFSNIHTFGFRGEALPSI-GAVSHLTLMSRPPQN-NTGAQI 121
            A        R  T + +           RG AL +I      + + +R      T    
Sbjct: 67  WAFGEPNGAARGATRQANR---------RRGRALSTIVAQCERVEIATRANNECETTTIR 117

Query: 122 AISGEKISSVRPVAMNPG-TIVEVRDLFFTIPARLNFLKSEQVETNL---ITDVIRRMAI 177
           A     +            T V+   +F          + +  +  L   +  ++    +
Sbjct: 118 ATRAAGVECGSGAFDEKWSTTVKCVGVFAANSIAAARTREDVRKGALERELKSIVFHACL 177

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--AVELNEKSNEITLQG 235
             P++S           +++      +  + + +  G++ +     V+   +  +  ++G
Sbjct: 178 LRPELSMNVIMNGRAVERVS--GDRESVLDGLRRAYGDEVVGWLRMVDYESEDAKWRVRG 235

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQ---DKFILSTIRTAYAETIPLG------RYPVVVL 286
           Y        G+++   V++NG  +    D      IR      +  G       YP  ++
Sbjct: 236 YVTPADRRLGSSDMQLVYVNGDHIIGKVDALHREMIRIEADAFLGDGARNAGKGYPGFLI 295

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQK---------------------- 324
            ++      +V   P+++ I F +   + + + Q+I                        
Sbjct: 296 AIDCPDDSYEVTYDPSRTLIEFDDWDTMFSHLRQAIVHEQCWPIREEPSSEKEPSPQEPP 355

Query: 325 --AINKKGISTSSVLSKKMISSFHQDNAPKTHLP-KYATSLTNTQEKLFLQENRLSTNDL 381
              + +   S +S   +   +     N P +    ++  SL +              N +
Sbjct: 356 PPVLRRGTFSQTSKRERCDDACCVSTNGPFSRAMLRHRNSLDSAPPVPHPSIMETWINPV 415

Query: 382 LPSDDPTYSEDNDPVEES--------EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
             + +            S        E    +      Q+ + +IIS   D +V  DQHA
Sbjct: 416 FDAPEVPILTIEKTPSNSRLRAPATLERAALEKARVIDQVGKKFIISTVDDCIVAFDQHA 475

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEI----IDLLEGECALIMEHDEDLHRLGIKAER 489
             ER+  E++     +      T  T         +   E   +  +  ++ R G   + 
Sbjct: 476 CDERIGLEELWATILNPNKHVPTQETKSPALWATPMSVNEFDALENNAHNVRRWGWDWKT 535

Query: 490 FGPNA------IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR-IENILATMAC 542
                      I +  +P I         LR  + E+  +S++ T   R +  +LA+ AC
Sbjct: 536 DDGGNGKQETMIYLTRVPTIRGTTLGGDALRQYLYELTSTSSSSTHAPRPLHRLLASKAC 595

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            G+I  G  +   E   +++ +        C HGRPT   L
Sbjct: 596 RGAIMFGDTLNPHECECIIKALRLTQMPFACAHGRPTCAPL 636


>gi|119631289|gb|EAX10884.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae), isoform
           CRA_b [Homo sapiens]
          Length = 164

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS 124
            + 
Sbjct: 122 VLD 124


>gi|54038365|gb|AAH84548.1| PMS1 protein [Homo sapiens]
          Length = 165

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS 124
            + 
Sbjct: 122 VLD 124


>gi|30582733|gb|AAP35593.1| PMS1 postmeiotic segregation increased 1 (S. cerevisiae) [Homo
           sapiens]
          Length = 166

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS 124
            + 
Sbjct: 122 VLD 124


>gi|30584133|gb|AAP36315.1| Homo sapiens PMS1 postmeiotic segregation increased 1 (S.
           cerevisiae) [synthetic construct]
 gi|33303755|gb|AAQ02391.1| PMS1 postmeiotic segregation increased 1 [synthetic construct]
          Length = 167

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA ++ V+  +   G    ++ DNG G+
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + + P+   ++ TSKI   +D  N+ T+GFRGEAL SI  ++ + + +R   +N   Q 
Sbjct: 62  KAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQY 121

Query: 122 AIS 124
            + 
Sbjct: 122 VLD 124


>gi|290979276|ref|XP_002672360.1| predicted protein [Naegleria gruberi]
 gi|284085936|gb|EFC39616.1| predicted protein [Naegleria gruberi]
          Length = 397

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 9/233 (3%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KLS   I++I +G++I   +  IKELIENSLDA S+ +E      G    +++DNG G
Sbjct: 166 ISKLSNNSIHRICSGQVIISLTSVIKELIENSLDASSTFIEIKFTNMGLECIEVSDNGNG 225

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           ++       V++H TSK+ +  D  NI TFGFRGEAL SI  ++ L + ++   +  G  
Sbjct: 226 ISKNNFENIVKKHNTSKLINFTDLENISTFGFRGEALSSISCMAELQIFTKTESDKLGNL 285

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           I    ++  +     ++    +     F  +  +             I   I       P
Sbjct: 286 IYYDHDQNITKIEQLLHNYVSIFGLKDFKKL--QKVDFIQNDPHFIKINGFISL-----P 338

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
           +     S+       +N +  +     +    I ++F  N   +         
Sbjct: 339 EKGCGRSSNDRQFLYVNNRPVDLPKITKCINEIYKEFNRNQYPIFIYMKMNHQ 391


>gi|239611066|gb|EEQ88053.1| DNA mismatch repair protein [Ajellomyces dermatitidis ER-3]
          Length = 843

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 9/235 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L       + +   I  P   +KELI+NSLDA ++ +   ++        + DNG
Sbjct: 1   MSIAHLPPDTARAVRSTSAISDPCSLVKELIDNSLDAGATYISVEVSANTLDTIHVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   +  +  +R CTSK+   DD  NI   T GFRGEAL S       + + ++    
Sbjct: 61  VGIHPNDRHLVCKRSCTSKLQTIDDLKNIGGSTLGFRGEALASAAEMCGSIAITTKVAGE 120

Query: 116 NTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIR 173
             G          + S    A   GT V + +    +P R     KS     N +  V+ 
Sbjct: 121 MVGETLKYDRTGLLVSCTKAAHPTGTAVRISEFLKLVPVRKQIALKSAPKTLNQMKKVLN 180

Query: 174 RMAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
              ++ P++  SF     KS+   +   + N      + +V+G + I+    +  
Sbjct: 181 AYVLSRPEIRLSFKILKTKSDSSWVYASTENATVSTAMLRVVGAEAISQCTTITW 235


>gi|171680331|ref|XP_001905111.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939792|emb|CAP65018.1| unnamed protein product [Podospora anserina S mat+]
          Length = 431

 Score =  173 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 119/348 (34%), Gaps = 34/348 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +    +I +   I    + +KEL++N+LD+ +  +   I+       ++ DNG
Sbjct: 1   MPITPLPDDACRRIGSTLNITSTFMVLKELLDNALDSGAQTIHISISPNTVDKIEVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G++S +     +   TSK+S  +D   I   + GFRG AL SI  V+ + +++R     
Sbjct: 61  SGISSFDFNALGRPSHTSKLSSFEDIDKIGGKSLGFRGTALASINTVATVHVITRVGLET 120

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE---QVETNLITDVIR 173
                      + +    A   GT V V ++F   P R    +           +  +++
Sbjct: 121 PQMIRLADNGGVETQSVHAAEQGTTVTVTNIFSNYPVRERIARKPVEISKNIEKMRYLVQ 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNG-NFPERISQVIGEDFINNAVELNEKSNEIT 232
             A A   +   F+ +++    +      G +  E   Q+ G    +             
Sbjct: 181 ACAFARHPLRIHFAVLQNPNQSLRISPHPGKDIMETAIQIFGVQKASQCFVRTWPDRPDP 240

Query: 233 LQGYTG--------------IPTF-NRGNANQFYVFINGRTVQDKFILS---------TI 268
             G  G               P   +       +  ++ R +                 +
Sbjct: 241 NTGLPGEERSRRHVFQAILMKPDVEHSKIPKGLFFSVDSRPISATRGTGRKLTMALRECL 300

Query: 269 RTAYAETIPLG--RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
           R +       G  +   + L +       DVN+ PAK  + F     +
Sbjct: 301 RQSVCPLTSAGVPKDIFICLNICCSLGWYDVNIEPAKEDVLFLQEDQL 348


>gi|289671317|ref|ZP_06492392.1| DNA mismatch repair protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 127

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 74/124 (59%)

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
                  + L  LG +  R GP ++ +R IPA+L+      LLRD++ ++ +   +  + 
Sbjct: 2   DTAEREADTLATLGFEITRAGPQSLHVRSIPALLASAEPEALLRDVLGDLREHGQSRRIA 61

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              + +L+TMAC+G++R+ R++   EMN LLR+ME    S QCNHGRPT+ +  LSDI++
Sbjct: 62  SARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATERSGQCNHGRPTWARFTLSDIDR 121

Query: 591 LFGR 594
            F R
Sbjct: 122 WFLR 125


>gi|289665670|ref|ZP_06487251.1| DNA mismatch repair protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 126

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/124 (37%), Positives = 74/124 (59%)

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
                  + L  LG +  R GP ++ +R IPA+L+      LLRD++ ++ +   +  + 
Sbjct: 1   DTAEREADTLATLGFEITRAGPQSLHVRSIPALLASAEPEALLRDVLGDLREHGQSRRIA 60

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              + +L+TMAC+G++R+ R++   EMN LLR+ME    S QCNHGRPT+ +  LSDI++
Sbjct: 61  SARDELLSTMACHGAVRANRRLTVPEMNALLRDMEATERSGQCNHGRPTWARFTLSDIDR 120

Query: 591 LFGR 594
            F R
Sbjct: 121 WFLR 124


>gi|31873629|emb|CAD97782.1| hypothetical protein [Homo sapiens]
          Length = 185

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 64/103 (62%), Gaps = 2/103 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 82  IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 141

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAV 103
           +  E       +H TSKI +  D + + TFGFRGEAL S+ A+
Sbjct: 142 VEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL 184


>gi|294932553|ref|XP_002780330.1| dna mismatch repair protein pms2, putative [Perkinsus marinus ATCC
           50983]
 gi|239890252|gb|EER12125.1| dna mismatch repair protein pms2, putative [Perkinsus marinus ATCC
           50983]
          Length = 483

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 17/224 (7%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L+  +++ I A +++   S  +KEL+ENSLDA +  +   +   G     ++D+G G
Sbjct: 13  ISSLTRDVVDSICAAQVVTSLSQCVKELLENSLDAGARNITVTLVNNGVDMIAVSDDGCG 72

Query: 63  MTSEEIPMAVQRHCTSKI------SDDFSNIHT-FGFRGEALPSIGAVSH--LTLMSRPP 113
           ++ E        H TSK+      +D+    H+ FGFRGEAL ++  +S+  +T+++R  
Sbjct: 73  VSEENWSTLCSWHATSKVDIVESRTDELRLGHSDFGFRGEALAAMCGLSNGGVTVLTRTE 132

Query: 114 QNNTGAQIAISGEKISSVRPVAMNP----GTIVEVRDLFFTIPAR-LNFLKSEQVETNLI 168
            +       +  +K   +           GT V +R LF  +P R   F ++ + +    
Sbjct: 133 DSKAETGKVLVYDKTGRLSSSDGEAARGVGTTVTIRGLFRGLPVRLREFERNAKKQVTAT 192

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             +++  A+    V+F  +        +   +   +    I +V
Sbjct: 193 VGLMQAYAVIRHDVAFRLTCDGR---SLLATNPEDDMETAIRKV 233



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 112/281 (39%), Gaps = 22/281 (7%)

Query: 312 TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFL 371
             +   +      A+ +  ++       + + + + ++  +T + K ++     ++ + +
Sbjct: 187 KQVTATVGLMQAYAVIRHDVAFRLTCDGRSLLATNPEDDMETAIRKVSSPGNVGRKLMKI 246

Query: 372 QENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG-LVIVD 430
             ++  + +    +    +      +E     ++      Q ++ +II+      L I+D
Sbjct: 247 SSSQEDSGNEEFDEGTNATFHVKLGKE----DFEAMRVIGQFNKGFIITALEGRWLFILD 302

Query: 431 QHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF 490
           QHA  E+ IFE +     ++++ SQ ++ P  + L     + I     ++   G +   F
Sbjct: 303 QHACDEKTIFETL---NKTSELKSQPMIVPVRLSLPPPLESCIRGSRREIEACGFRF-NF 358

Query: 491 GPNA-----IAIRE--IPAILSKKNIPQLLRDIIDEIIDSSTTYTL-QDRIENILATMAC 542
             +A     + +    + + L  + IP            S+  + L   R+ ++LA+ AC
Sbjct: 359 DDDAPIGSRVQLTSLGVASGLGFERIPS-----ASLFWSSALGHCLRPPRVWSMLASRAC 413

Query: 543 YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             +I  G  +   +M  ++R+M        C HGRPT   L
Sbjct: 414 RTAIMIGDSLSRKKMEGVVRKMAALNQPWNCPHGRPTMRLL 454


>gi|330801903|ref|XP_003288962.1| hypothetical protein DICPUDRAFT_153264 [Dictyostelium purpureum]
 gi|325080993|gb|EGC34526.1| hypothetical protein DICPUDRAFT_153264 [Dictyostelium purpureum]
          Length = 1482

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/441 (20%), Positives = 171/441 (38%), Gaps = 42/441 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL E +  ++ +  +I     AI+E++ NS+DA+++ +   I     +F ++ DNGFG
Sbjct: 20  IKKLEEDVSLKVRSSAVIVSLEQAIEEIVFNSIDAQATSIVISINLSNLTF-EVKDNGFG 78

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ---NNT 117
           +         +  CTSKI+   D  ++ TFG+RGE+L S+  VS+L ++S         T
Sbjct: 79  INYGNFKTIGEHSCTSKINKLTDLKSLSTFGYRGESLASLSDVSNLDIVSTSNNNTVQKT 138

Query: 118 GAQIAISGEKISSVRPVAMNP----GTIVEVRDLFFTIPARLN--FLKSEQVETNLITDV 171
                    K    +    N     GT+V+VRDLF   P R    F  + ++      ++
Sbjct: 139 FNFGKCEQFKTIDSQDSIHNKPISNGTVVKVRDLFKNFPVRRQNLFHPNLKLILKKRIEI 198

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQ---STNGNFPERISQVIGEDFINNAVELNEKS 228
           I   A+++P + F+      +   +      S    F     Q +         E     
Sbjct: 199 I---ALSFPNIRFSVYDETKSLNILKTPKDTSFMSYFKHFYGQEMANKLEFIVSEGFPNE 255

Query: 229 NEITLQGYTGIPT-FNRGNANQFYVFINGRTVQDKFILSTIRTAYAET------------ 275
               L GY   P      N +  Y ++N R V +  +   I   Y +             
Sbjct: 256 KSFYLSGYVSSPQKKGHPNKSFQYFYLNNRIVLNTKLHRHINQLYHKFRLFNATRRAHAN 315

Query: 276 ---IPLGR----YPVVVLLLEIDPRQVDVNVHP-AKSYIRFRNPTIIRNFIIQSIQKAIN 327
              IP        P+ +L L+    + + +  P +K+++ F +       I   I K + 
Sbjct: 316 TSKIPKKEVIDSNPIFILFLKCSQLEYERSYEPSSKTFLEFNDWKKPLGEIQNVITKFLT 375

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
           +   + + +      +S   D +    +  +  S+++      L+EN     DL  + + 
Sbjct: 376 RFRENDTLLYEN---NSKRSDPSSALDVSIFEDSISDDVNNSQLEENEEDGFDLGYNKND 432

Query: 388 TYSEDNDPVEESEATHYQLGI 408
             +E ++  E      +    
Sbjct: 433 DNNEGDNYRENQGFADFFQDE 453



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 79/193 (40%), Gaps = 3/193 (1%)

Query: 393  NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTK 451
                E       +      Q  + +++ +    ++++DQHA  ER+  E + ++ F   K
Sbjct: 1266 QKCQEIIPREMLKDFKFITQWDKKFLVCEANGIVLVLDQHAVSERIKLETLEKKYFGENK 1325

Query: 452  ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
                 +       L   E  L+  + ++L   G +  R  P +I I ++P          
Sbjct: 1326 FDLCPMPERSRWSLTAYELELMKIYSKNLEDWGFEW-RSNPTSITILQVPMFCLVGLGVN 1384

Query: 512  LLRDIIDEIIDS-STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
             LR+ +  + ++  +  T       ILA+ AC  +I+ G  +      +LL ++ +    
Sbjct: 1385 DLREFLYLLENNKGSPSTKPPAAHRILASKACRTAIKFGHNLTKEVCIKLLEDLNECNIP 1444

Query: 571  SQCNHGRPTFIKL 583
             QC HGRP+ I L
Sbjct: 1445 FQCAHGRPSIIPL 1457


>gi|50726320|dbj|BAD33895.1| DNA mismatch repair protein -like [Oryza sativa Japonica Group]
          Length = 1249

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/338 (20%), Positives = 144/338 (42%), Gaps = 34/338 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I++L + + + + +  ++   S  ++ELI+ S++A +             + ++ D+G 
Sbjct: 110 TIKRLPKSVHSSLRSSIVLFDLSRVVEELIDISVNARA------------CYVKVEDDGC 157

Query: 62  GMTSEEIPMAVQRHCTSKISD---DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G+T +E+ +  +++ TSK  +   D   +  +FG  GEAL S+  +S + + ++      
Sbjct: 158 GITRDELVLVGEKYATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVRTKARGRPN 217

Query: 118 GAQIAISGEKISSVRPVAMNP--GTIVEVRDLFFTIPARL-NFLKSEQVETNLITDVIRR 174
                I G K S +         GT V VR+LF+  P R      S + E +L+   + R
Sbjct: 218 SYCKIIKGSKCSHLGIDEQREVVGTTVIVRELFYNQPVRRKQMQSSYKRELHLVKKSVLR 277

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +A+ +P+VS     I+S    +    ++   P  +S ++G++  +   E+        L 
Sbjct: 278 VALIHPQVSLRLFDIESEDELLYTIPSSSPLP-LVSNILGKNVSSCLHEIATSDKHFALS 336

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           G+   PT    N +     I+ R+ + +                  YP  +L L      
Sbjct: 337 GHISRPTDVFCNKDFQNEEIDVRSKKRQKNEV--------------YPAYLLNLCCPRSS 382

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
            D++  P+++ + F++   +  F  ++I     K    
Sbjct: 383 YDLHFEPSQTIVEFKDWQTVMYFFERTITDYWKKHAPQ 420



 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 27/222 (12%)

Query: 397  EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ-------HAAHERLIFEKMRQDFNS 449
            E  +   ++      Q+ + +I   + + L++VDQ       H  +E +    + +  + 
Sbjct: 990  ECIDKNCFEEARVLLQLDKKFIPVISGEVLLLVDQEEFIFYVHILYEVVSVYMVTKVLSD 1049

Query: 450  TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA------ERFGPNAIAIR----- 498
                   L + E + L E    L  ++ + +   G         E F  N   +R     
Sbjct: 1050 DGRGITYLDSEEDLVLPETGFQLFQKYMQQIQSWGWIINSTNSCESFKKNMNVLRRQSRR 1109

Query: 499  ----EIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQS 554
                 +P IL      + L D I ++ D+  +  +   +  IL   AC G+I  G  +  
Sbjct: 1110 LTLAAVPCILGVTLTGKDLMDFIQQLDDTDGSSAIPPAVIRILNFKACRGAIMFGDPLLP 1169

Query: 555  IEMNRLLREMEKNPNSSQCNHGRPTFIKL----KLS-DIEKL 591
             E + ++ E++      QC HGRPT + +     L  ++ +L
Sbjct: 1170 SECSLIIEELKATSLCFQCAHGRPTTVPIVNVASLRGELARL 1211


>gi|149011045|ref|ZP_01832350.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764681|gb|EDK71611.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP19-BS75]
          Length = 195

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 1/182 (0%)

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  Y+ +Q  DGL I+DQHAA ER+ +E+ R+   +   + Q LL P I +    +   
Sbjct: 1   MHGTYLFAQGRDGLYIIDQHAAQERVKYEEYRESIGNVDQSQQQLLVPYIFEFPADDALR 60

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+    +G N   +RE P  ++++ I   + ++ D ++ +    +++  
Sbjct: 61  LKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKY 119

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
              +   M+C  SI++  ++      +LL ++ +  N   C HGRP  +    SD+EK+F
Sbjct: 120 RAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNCPHGRPVLVHFTKSDMEKMF 179

Query: 593 GR 594
            R
Sbjct: 180 RR 181


>gi|240281641|gb|EER45144.1| DNA mismatch repair protein [Ajellomyces capsulatus H143]
          Length = 820

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 23/234 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L    I  + +  ++  P    KELI+NSLDA ++ +   +A       Q+ DNG
Sbjct: 1   MSIAQLPPDTIRAVRSNSVLSDPCALAKELIDNSLDAGATCISVEVAANTLDTIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMSRPPQN 115
            G+   + P+  +R CTSK+   DD  NI   T GFRGEAL S      ++ + +R   +
Sbjct: 61  TGIHPNDRPLVCKRSCTSKLRSIDDLENIGGSTLGFRGEALASAAEMCGNIAITTRVSGD 120

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITDVIRR 174
                              +   GT V V +    +P R     KS     N +  V+  
Sbjct: 121 ---------------CTKASHPTGTTVRVYEFLRFVPVRKQRALKSTSKTLNRMKKVLNA 165

Query: 175 MAIAYPKV--SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
             ++ P++  SF     K++   +   + +      + +VIG + I+    +  
Sbjct: 166 YVLSRPEIRLSFKILKSKNDSSWIYASNKHPTVSTAMLRVIGAEAISQCTTITW 219


>gi|154275632|ref|XP_001538667.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415107|gb|EDN10469.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 720

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 129/400 (32%), Gaps = 47/400 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I +L    I  + +  ++  P    KELI+NSLDA ++ +   +A       Q+ DNG
Sbjct: 1   MSIAQLPPDTIRAVRSNSVLSDPCALAKELIDNSLDAGATCISVEVAANTLDTIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+   +  +  +R CTSK+   DD  NI   T GFRGEAL S                 
Sbjct: 61  TGIHPNDRHLVCKRSCTSKLRSIDDLENIGGSTLGFRGEALASAAE-------------- 106

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRM 175
                                 GT V V +    +P R    LKS     N +  V+   
Sbjct: 107 --------------------MCGTTVRVDEFLRFVPVRKRRALKSASKTLNRMKKVLNAY 146

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
            ++ P++  +F  +K         +   N    +S  +       A+          +Q 
Sbjct: 147 VLSRPEIRLSFKILKRKNDSSWIYA--SNKHPTVSTAMLRVIGAEAISQCTTITWPQIQD 204

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
                      +N     +           S   +      P+   P   + L   P   
Sbjct: 205 ERDDSLRPMSTSNGVAKELVELFKSHIRSGSLCDSGQTP--PVD--PFCFIHLHCRPGIY 260

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM--ISSFHQDNAPKT 353
           DVNV P K+ + F +  ++ +      +    +     +   + ++    S  +   P  
Sbjct: 261 DVNVEPLKNDVLFEDSKLVISMAGNLFKTVYGETKPRHTHQRNCQIENQPSSSRMIRPLD 320

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             P         +E    +    S      S +   +  +
Sbjct: 321 SRPANNQRDHEVEESPLFRHISSSATKDCHSIECICASSS 360


>gi|213857669|ref|ZP_03384640.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
          Length = 81

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 38/79 (48%), Positives = 56/79 (70%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          M I+ L  ++ NQIAAGE++ERP+  +KEL+ENSLDA ++R++  I  GG    +I DNG
Sbjct: 3  MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNG 62

Query: 61 FGMTSEEIPMAVQRHCTSK 79
           G+  +E+ +A+ RH TSK
Sbjct: 63 CGIKKDELALALARHATSK 81


>gi|168000047|ref|XP_001752728.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696259|gb|EDQ82599.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1067

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 146/358 (40%), Gaps = 34/358 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I +LS  +++ + +  ++     A++ELI NSLDA +++V     GGG S  ++ D+G 
Sbjct: 3   RIGRLSAAVVSHLRSNTVVSSFEQAVEELICNSLDAGATQVRVQFDGGGAS-VKVEDDGH 61

Query: 62  GMTSEEIPMAVQRHCTSKIS--DDFSN-IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           GM+ E++ +   RH TSK+   D+ +  + T GFRGEAL S+  +S L + SR       
Sbjct: 62  GMSREDLELVGLRHATSKLHTLDELAAGVQTLGFRGEALSSLSDLSILEITSRVQGCPHT 121

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-----------------LKSE 161
               +        R         + +RD+F+  P R                      S 
Sbjct: 122 YCKIMKASFPGLYRLHC-----TITLRDMFYNQPVRRRLFHSSQNAAFTFAVNLPWCCSS 176

Query: 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
           +     + + I R+A+AY  V+F  +       +++ +  + +    +  V G +F +  
Sbjct: 177 RKILQSVKERIVRLALAYFNVTFILTDSLRVEEELHIR-RHTSLYSTLQDVFGREFCHGL 235

Query: 222 VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS---TIRTAYAETIPL 278
            E++    ++ L G+      +        VF +   + +                ++  
Sbjct: 236 KEIDFAKGKLRLTGFLS----STETYTSLKVFTDPSHLLNATPSGGEPKRIEKLDTSLGK 291

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
             YP  VL L  +  + D+     K+Y+ F++ T    F+   +  +   +     + 
Sbjct: 292 AAYPAFVLNLSCELSEYDITFEATKTYVEFKDWTPALTFLENVLCVSWGDEAEKRQAT 349



 Score = 87.0 bits (214), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 85/313 (27%), Gaps = 61/313 (19%)

Query: 319  IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
                Q+A         +     ++           H     T + +  E       R +T
Sbjct: 713  EHLCQQAEWTCTSPAVAPDHDLVLPKSRPTEKESIHRDVDVTPVASLYEVWSNPCMRANT 772

Query: 379  NDLLPSDDPTYSEDNDPVEESEATHY--QLGIACAQIHQNYIISQTTDGLVIVDQHAAHE 436
            ND+L     T    +  ++    T    Q      Q+   +I     + L++VD      
Sbjct: 773  NDILHVSAVTLKSWSKSLQPDMVTKKSLQHARVLQQVDNKFIAIVAQNVLLLVD------ 826

Query: 437  RLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP---- 492
                   +      +  S  L     + L  GE   +  + + +   G +          
Sbjct: 827  -------QVLAAGKQQCSTLLDVKHDLSLGLGEQQTLHAYRQQIEDWGWRFCTASDARSL 879

Query: 493  ------------NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATM 540
                          + +  +P IL        L + + ++  +         +  +L   
Sbjct: 880  DRTSIRGCDSTTCKLQLSAVPCILGVNLTASDLEEYLQQLGATQGASVPPPAVIRLLNYK 939

Query: 541  ACYGSIRSGRKMQSIEMNRLLREMEKNPNSS----------------------------- 571
            +C G+I  G  +   +  +L+  ++                                   
Sbjct: 940  SCRGAIMFGDPLLPAQCRQLVSHLKHTSLCFQDYASSLAAFSSKATPMLCLINDFCLFVT 999

Query: 572  -QCNHGRPTFIKL 583
             QC HGRPT + L
Sbjct: 1000 LQCAHGRPTMVPL 1012


>gi|330720969|gb|EGG99136.1| DNA mismatch repair protein MutL [gamma proteobacterium IMCC2047]
          Length = 138

 Score =  169 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 84/136 (61%)

Query: 459 TPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIID 518
            P  I + E E +   E  +   +LG   ER GP ++ +R+   +L   +  QL+RD++ 
Sbjct: 1   MPVSIAVSEREASCAEEFQQTFAQLGFVVERAGPESLLVRQGATMLRNADSEQLVRDVLS 60

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +++   ++  +++ I  IL++MAC+GS+R+ RK+   EMN LLR+ME    S QCNHGRP
Sbjct: 61  DMLAQGSSDRIREHINEILSSMACHGSVRANRKLTIPEMNALLRQMEATERSGQCNHGRP 120

Query: 579 TFIKLKLSDIEKLFGR 594
           T+ ++ + +++KLF R
Sbjct: 121 TWTQMSMFELDKLFLR 136


>gi|300708140|ref|XP_002996256.1| hypothetical protein NCER_100672 [Nosema ceranae BRL01]
 gi|239605541|gb|EEQ82585.1| hypothetical protein NCER_100672 [Nosema ceranae BRL01]
          Length = 698

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/354 (22%), Positives = 136/354 (38%), Gaps = 42/354 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ L +K    I + + I+     +KELIENSLD+ ++ ++  +        ++ DNG G
Sbjct: 2   IKNLDQKTSELIKSQQYIQNTYTIVKELIENSLDSNATEIKIFVDD---ELIRVEDNGTG 58

Query: 63  MTSEEIPMAVQRHCTSK---------ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP 113
           +   ++        TSK         ++ D +NI+  G+RG AL SI  +  L + SR  
Sbjct: 59  IL--DLKDVGNEGYTSKELTTYFVLGLNTDSTNIY-CGYRGLALCSIKNMCSLEITSRHK 115

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN-FLKSEQVETNLITDVI 172
            N  G +  I+   I          GT V+V ++F     R     KS   +   I  ++
Sbjct: 116 NNLIGYKKNINTGHI---SACPREIGTTVDVTNIFNNCILRKKLNKKSLTKDVKQIIKLV 172

Query: 173 RRMAI---AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
                    + +V F  +TI +               + I +     F N   E   K  
Sbjct: 173 EAYVKVYDVHFQVKFKGTTIFNECG-----------YKNILEYCKSKFNNIYDECLIKDM 221

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
                              +  V+   R V  K I   I++ Y   +     P+  L+L+
Sbjct: 222 PDFFIFMFPNN----QGKEESTVYFGKRFVTSKKISKEIKSTYN--LFQEGLPLFYLVLK 275

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
                +D N+ P KS I F N   I   I + I   ++ + +  ++  + K IS
Sbjct: 276 CP---IDFNISPTKSEILFENEDEIIGKIKKEITNFLSNQMVFKNNHTTNKKIS 326



 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 97/238 (40%), Gaps = 16/238 (6%)

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIH 414
           P Y   ++ + E   ++ +  +      + D         +    +   +       Q +
Sbjct: 471 PIYEVPVSPSNENFNIESSGKTICLQETAYDFIKQVQQCEISLVLKKNDFFDMEIIGQFN 530

Query: 415 QNYIISQTTDG----LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGEC 470
           + +II++        L+IVDQHAA E   +E ++    + KI  Q +L P  + L   + 
Sbjct: 531 KGFIITRLVKNDKIYLIIVDQHAADEIFNYENIK---KNAKILKQKVLVPIELKLSPIDK 587

Query: 471 ALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
             + E+       G   E        +  +P    ++       +++D   +     T  
Sbjct: 588 LFVEENIVSFSIYGFDIENM-----KLLTVPVFKGEEFNLNDFYELLDNFKNGGEGLT-- 640

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDI 588
            +I+ I+A+ AC  S+  G  +   ++ ++++ ++      +C HGRPTF+ ++  D+
Sbjct: 641 -KIQKIMASKACRMSVMVGDSLNKAKLEKIVKRLKDLEKPWKCPHGRPTFMVVEEIDL 697


>gi|302413792|ref|XP_003004728.1| DNA mismatch repair protein pms1 [Verticillium albo-atrum VaMs.102]
 gi|261355797|gb|EEY18225.1| DNA mismatch repair protein pms1 [Verticillium albo-atrum VaMs.102]
          Length = 116

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 2/106 (1%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +    +++I +G++I      +KEL+ENSLDA ++ ++      G    ++ DNG G
Sbjct: 4   IKAIEANTVHRIQSGQVIVDLCSVVKELVENSLDANATAIDVRFKNQGLEAIEVHDNGSG 63

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHL 106
           ++ +       +H TSK++   D + + TFGFRGEAL S+ A+SH 
Sbjct: 64  ISPDNYEGLALKHHTSKLATFSDLNTLSTFGFRGEALSSLCALSHF 109


>gi|154344651|ref|XP_001568267.1| mismatch repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065604|emb|CAM43374.1| mismatch repair protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 840

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 155/427 (36%), Gaps = 60/427 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I +L      +IAAG++I   +  +KEL EN+LDA+++ V   +   G     + D+G G
Sbjct: 2   IARLDGACARKIAAGQVITDLTSVVKELTENALDAKAATVTIRLLNYGLDEIVVDDDGTG 61

Query: 63  MTSEEI--------------PMAVQRHCTSKIS-DDFSNIH------------------- 88
           ++   +              P+   R  T+K   DD                        
Sbjct: 62  LSMGRLVDTATNKLRDGASTPLLSSR-ATTKQRWDDLDRYTHASAKGEVDDHLTSQVEST 120

Query: 89  ------------TFGFRGEALPSIGAVSHLTLMSRPPQNNTGA-QIAISGEKISSVRPVA 135
                       + GFRGEAL S+  +  +T+ +R         +++      +S     
Sbjct: 121 RVAGGEGDSFDPSLGFRGEALHSLAHMGTVTIETRSADTGAMTVRLSYDHALHTSRLEAV 180

Query: 136 MNP---GTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK- 190
                 GT V VR LF  +P R   ++K+ + + +  T  +++ A+++P +       + 
Sbjct: 181 RLRDVLGTTVTVRHLFKHLPVRHREYVKNCRKQLSKATSTMKQYAVSHPHIRLVMQHQET 240

Query: 191 --SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF-NRGNA 247
             S    +   + +G+     ++  G   +++   +N   +  TL G         R ++
Sbjct: 241 PTSGVITLVSLTGSGDATRSATEAYGGLCVSHMQRVNWSLSFGTLSGLVSKVNSGGRLSS 300

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETIPLGR---YPVVVLLLEIDPR-QVDVNVHPAK 303
           +     ++GR V    +   +  A+ + +P      +    L ++ +   Q DVN+ P K
Sbjct: 301 DNQVFALDGRLVDLPRLGKALNDAFTQCLPNASQRLHVAFFLQVKTNASLQYDVNLTPNK 360

Query: 304 SYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT 363
             +       + + + +   +              +++  +   D           T ++
Sbjct: 361 RKVLLVQEDRLADEVYRRALQEFGSALQEVELDRGQRIAQARTADVRAAQLTKLIRTPVS 420

Query: 364 NTQEKLF 370
            T    F
Sbjct: 421 ATSFTQF 427



 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 6/233 (2%)

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
               +       +        D   S       ++D         ++      Q +  +I
Sbjct: 603 QEPFSADPPDAVVLPASTKKRDRASSRTLGAQTEDDLNYYFNKNSFKEMRVIGQFNHGFI 662

Query: 419 ISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           ++   +G + IVDQHA+ E+  +E++ + + +T    Q L+ P  + +   E  L MEH 
Sbjct: 663 VATLPNGDVFIVDQHASDEKYNYERLVRAYEATP---QPLVLPVSVAMSTHEVDLAMEHK 719

Query: 478 EDLHRLGIKAERFGPNA-IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
             L   G K  R   +  + +  +P +         + +++ +I+   T       + + 
Sbjct: 720 LALQHHGFKVNRGSDDTKLMVYSLPVLPYDVVSASDVMELVQQIVQYGTITKPLRAVWHS 779

Query: 537 LATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLSDI 588
           +AT AC  SI  G  +    M  +L  + +      C HGRPT   L  ++++
Sbjct: 780 MATKACRSSIMIGTPLTMKRMKLILERLGELDQPWNCPHGRPTLRLLCNIAEL 832


>gi|149046219|gb|EDL99112.1| similar to postmeiotic segregation increased 1, isoform CRA_b
           [Rattus norvegicus]
          Length = 150

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 2/123 (1%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ + I      +KELIENSLDA ++ ++  +   G    +I DNG G+
Sbjct: 2   KQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGANSIDVKLENYGFDKIEIRDNGAGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            + ++P+   ++ TSKI   +D   + T+GFRGEAL +I  V+ + + +R   ++   Q 
Sbjct: 62  KAVDVPVMAVKYYTSKISSHEDLQTLTTYGFRGEALGAICNVAEVVVTTRTAADDFSTQY 121

Query: 122 AIS 124
            + 
Sbjct: 122 VLD 124


>gi|134111188|ref|XP_775736.1| hypothetical protein CNBD4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258400|gb|EAL21089.1| hypothetical protein CNBD4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 812

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 162/407 (39%), Gaps = 43/407 (10%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITD 58
           M  I  L       + +  I+   +    EL++NSLDAE++++E  +    G    ++ D
Sbjct: 1   MPNILPLPRPTSTTLRSSIILPSLAQIFSELLQNSLDAEATKIECYVNLAKGNETLRVED 60

Query: 59  NGFGMTSEEIPMAVQRHCTSK-ISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G++   +    +R  TSK I +     + ++GFRGEAL SI ++S L + +R     
Sbjct: 61  NGTGISKNGLAKIGKRFRTSKEIHEGGLGPVGSYGFRGEALASIASLSLLDITTRRASFP 120

Query: 117 TGAQIAISGEKIS----SVRPVAMNPGTIVEVRDLFFTIPARLNF--LKSEQVETNLITD 170
              +I    + +       R +A   GT V VR++F TIP R       S  +  + +  
Sbjct: 121 VYTKILRHSKTLFEGPNPDRHIAGGQGTTVVVREIFRTIPVRREELAATSSTLLMSQLKK 180

Query: 171 VIRRMAIAYPKVSF-----TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
           V+  +A+  P V +       +T    +  M+  +++    +    + G   + +  ++ 
Sbjct: 181 VVETLALGNPGVRWVLWEEKTTTTGGLKRIMSINASDSAL-DVFKTLYGGALVQSVQKIK 239

Query: 226 EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI----------------- 268
             + +  + G+         +    +++IN   +    + + I                 
Sbjct: 240 VTAGKRKVDGFIS--ISGDVSKAHQHLYINNYPIDRGDVHTAIAKKFASSKFANLASAGQ 297

Query: 269 RTAYAETIPLG--------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQ 320
                +  P G        RYPV VL + +   ++DV+  P K  + +++   ++  ++ 
Sbjct: 298 HDEDEDYHPSGRRSPRRLERYPVYVLNVTLSAGELDVSYEPQKGVLGYKDIESLKTMLLA 357

Query: 321 SIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQE 367
            + + + + G   +   S     +    +     + + A++L     
Sbjct: 358 VVDEFLRRNGFGPAHTPSSMSSPTKRPVSHVSQPVGRLASALGRPSP 404



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 52/210 (24%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST-------KITSQTLLTPEIIDLLEGECALIMEHDE 478
           L ++DQHAA ER+  EK+  +                      I+   E +         
Sbjct: 565 LALIDQHAADERVAVEKVLLELCEGFAKDDLLVAELAKTRPMIILTQAEAQILSQPWVLS 624

Query: 479 DLHRLGIKAE-----RFGPN-AIAIREIPAIL-------SKKNIPQLLRDIIDEIIDSST 525
              R GI+         G    + +  +P  L           + +L+R  +  + + ++
Sbjct: 625 LFKRWGIRLTMPPGLSHGEYIQVKVETVPLSLLSRLGRKEGSEMTRLVRGYLPIVAEHAS 684

Query: 526 TYTL--------------------------------QDRIENILATMACYGSIRSGRKMQ 553
             T+                                   +  +  + AC G+I    ++ 
Sbjct: 685 EITVLVENLEGKAMEDNEGGDTEGYGGDWGRLMRFMPREMLELANSKACRGAIMFEDRLS 744

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + +RL++++ +      C HGRP+ + L
Sbjct: 745 HDQCDRLIQQLSQTRFPFMCAHGRPSMVPL 774


>gi|53729301|ref|ZP_00348375.1| COG0323: DNA mismatch repair enzyme (predicted ATPase) [Pasteuria
           nishizawae str. North American]
          Length = 213

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 2/197 (1%)

Query: 399 SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTL 457
                +       QIH  Y++++  DG+ ++DQHAAHER+ +E++        + TSQTL
Sbjct: 16  PAPMAWPRLRPVVQIHATYVVAEAEDGMCLIDQHAAHERIHYERLCASLQGADRRTSQTL 75

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           L P  ++L   E   +      L  +GI+ E FG     +R  P++ S +    +L D +
Sbjct: 76  LLPISVELPRDEAYTLKPLLPSLAEIGIEVEPFGEATFLVRSHPSVWSAQEAAAILPDWL 135

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            E+  S         +  + +  +C  SI++  ++   EM  LL++       + C HGR
Sbjct: 136 TEVARSGRPTPTC-WLAELTSRWSCRASIKAQHRLSFAEMEALLQQWMDCQQPATCPHGR 194

Query: 578 PTFIKLKLSDIEKLFGR 594
           P  +++   ++ +LF R
Sbjct: 195 PVVVRMTSEELARLFRR 211


>gi|46202859|ref|ZP_00052488.2| COG0323: DNA mismatch repair enzyme (predicted ATPase)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 154

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 10/153 (6%)

Query: 452 ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
           +  Q LL P+++++   E   ++E   +L RLG+  E FGP A+ +R +PA L+  ++  
Sbjct: 1   MARQVLLIPDVVEMAPEEADRLVEAAPELERLGLSLEAFGPGAVLVRAVPAALAGGSVKN 60

Query: 512 LLRDIIDEI----------IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           L+ D++D +                  +  R++ +L+ M+C+GSIR+GR+++  EMN LL
Sbjct: 61  LVLDVLDALEASGVEEGGPAGEGDPDPVSRRLDALLSRMSCHGSIRAGRRLKPEEMNALL 120

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           REME  P S  CNHGRPTF+ L LSDIE+LFGR
Sbjct: 121 REMEATPLSGSCNHGRPTFVTLGLSDIERLFGR 153


>gi|332260508|ref|XP_003279328.1| PREDICTED: putative postmeiotic segregation increased 2-like
           protein 1-like [Nomascus leucogenys]
          Length = 242

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 4/185 (2%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S  +KEL+ENSLDA ++ ++  +   G    +++DNG  
Sbjct: 47  IKPIGRKSVHQICSGPVVLSLSTVVKELVENSLDAGATNIDLKLKDYGVHLTEVSDNGCR 106

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
              E       +H T KI +  D + + TFGF+ EAL S+ A S +T+         GA+
Sbjct: 107 EKEENFEGLTLKHHTCKIQEFADLTQVETFGFQAEALSSLCAPSDVTISICHALAKVGAR 166

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIA 178
           +      KI    P  +  GT V V+ L  T+P R   F ++ +                
Sbjct: 167 LVFDHNGKIIQKTPYPLPRGTTVSVKQLLSTLPMRHKEFQRNVKKVQRACFPFAFCHNCQ 226

Query: 179 YPKVS 183
           +P+ S
Sbjct: 227 FPEAS 231


>gi|83765470|dbj|BAE55613.1| unnamed protein product [Aspergillus oryzae]
          Length = 156

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 5/142 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L    +  I +  +I  P   +KEL++N+LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPITALPPTTVRAIGSTSVIADPCSVVKELLDNALDASATSIGIEISSNAVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G++S++  +  +R  TSKI   +D   +   + GFRGEAL S   VS  +T+ +R    
Sbjct: 61  HGISSDDHALVCKRTFTSKIQTVEDLRTLGGKSLGFRGEALASAAEVSGGVTITTRVEAE 120

Query: 116 NTGAQIAISGEKISSVRPVAMN 137
             G  I               +
Sbjct: 121 MVGTSIKYGRNGELISYRWQTH 142


>gi|238482997|ref|XP_002372737.1| DNA mismatch repair protein mutl, putative [Aspergillus flavus
           NRRL3357]
 gi|220700787|gb|EED57125.1| DNA mismatch repair protein mutl, putative [Aspergillus flavus
           NRRL3357]
          Length = 145

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L    +  I +  +I  P   +KEL++N+LDA ++ +   I+       Q+ DNG
Sbjct: 1   MPITALPPTTVRAIGSTSVIADPCSVVKELLDNALDASATSIGIEISSNAVDVIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            G++S++  +  +R  TSKI   +D   +   + GFRGEAL S   VS  +T+ +R    
Sbjct: 61  HGISSDDHALVCKRTFTSKIQTVEDLRTLGGKSLGFRGEALASAAEVSGGVTITTRVEAE 120

Query: 116 NTGAQIAI 123
             G  I  
Sbjct: 121 MVGTSIKY 128


>gi|111380657|gb|ABH09705.1| MLH2-like protein [Penicillium marneffei]
          Length = 990

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 146/428 (34%), Gaps = 47/428 (10%)

Query: 43  ETVIAGGGKSFFQITDNGFGMTSEEIPMAV--------------------QRHCTSKIS- 81
           +      G    ++ DNG G+  +                           +H TSK++ 
Sbjct: 3   KVRFKNDGLDSIEVQDNGSGIDPQNYESIGMTTVTISNIEIDSQAYYFTALKHYTSKLAS 62

Query: 82  -DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPP-QNNTGAQIAISGE-KISSVRPVAMNP 138
            DD +++ TFGFRGEAL S+ AVS+  +++    Q     ++      K+   + VA   
Sbjct: 63  YDDLTSLTTFGFRGEALSSLCAVSNFHIITAQAHQAPKANKLEFEHSGKLKGSQIVAGQK 122

Query: 139 GTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMN 197
           GT V + +LF  +P R     K+ + E   + +++   A     V F+     S + ++ 
Sbjct: 123 GTTVSISNLFSRLPVRRKELEKNIKRELGKVINLLNEYACISTGVRFSVKNTDSKKRQLV 182

Query: 198 FQSTNGN--FPERISQVIGEDFINNAVELNEKSNE---------------ITLQGYTGIP 240
             +T  N    + I+ V G   +   + L  +                  I ++GY   P
Sbjct: 183 LLTTKANASIRDNIANVYGAKTLLTLIPLELELEFEPSATGKRLNRDLNKIHVRGYVSRP 242

Query: 241 TF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                RG  ++   ++N R      I       Y     + + P V+   ++D    DVN
Sbjct: 243 VVGEGRGTRDRQMYYVNSRPCGIPQIAKAFNEVYKTY-NISQAPFVLADFQMDTNAYDVN 301

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQDNAPKTHLP 356
           V P K  I   +   +   + +++ +     ++ +  S     K  +   Q   P     
Sbjct: 302 VSPDKRTILLHDSAALIESLKEALDQMFQDAEQTVPQSQFTINKQQTDIQQRLKPSPMRA 361

Query: 357 KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQN 416
               S T         +   S    +        +  +  +    T          I ++
Sbjct: 362 PLDRSRTEQATPTEESQTDRSEPVQVTHQHAQEDKTAEVADNENITQETTDSQVTAISED 421

Query: 417 YIISQTTD 424
               ++  
Sbjct: 422 AAADESDH 429



 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 22/178 (12%)

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I E+   L + 
Sbjct: 762 DELFIIDQHASDEKYNFERLQ---AETVVQNQRLVHPKTLDLTAVEEEIIRENKLALEKN 818

Query: 484 GIKAE-------RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL------- 529
           G   E         G     +  +P         + L ++I  + ++ T+ T        
Sbjct: 819 GFVIEVDDSGNEPIGRRCKLV-SLPLSKEVVFDIRDLEELIVLLSEAPTSATRNATTSDT 877

Query: 530 ----QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                 ++  + A  AC  SI  G+ +   +M + +R M        C HGRPT   L
Sbjct: 878 YIPRPSKVRKMFAMRACRSSIMIGKTLTVKQMEKAVRNMGTIDKPWNCPHGRPTMRHL 935


>gi|284054368|ref|ZP_06384578.1| DNA mismatch repair protein [Arthrospira platensis str. Paraca]
          Length = 146

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 3/109 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I  LSE +++ IAAGE+I+  +  ++EL+EN++DA+++R+   +    +   Q+ DNG 
Sbjct: 7   SIETLSEDVVDLIAAGEVIDSVAAVVRELVENAIDAKATRISVSLW-PQQWRIQVADNGE 65

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTL 108
           GM    +  A   H TSKI+   D   I + GFRGEAL SI  +S L +
Sbjct: 66  GMDLVNLKRAAMAHSTSKIATARDLLKISSLGFRGEALHSIAQLSDLEI 114


>gi|309799337|ref|ZP_07693580.1| DNA mismatch repair protein MutL [Streptococcus infantis SK1302]
 gi|308117004|gb|EFO54437.1| DNA mismatch repair protein MutL [Streptococcus infantis SK1302]
          Length = 211

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 413 IHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
           +H  Y+ +Q  DGL I+DQHAA ER+ +E+ R+   +   + Q LL P I +    +   
Sbjct: 1   MHGTYLFAQGRDGLYIIDQHAAQERVKYEEYRESIGNVDQSQQQLLVPYIFEFPADDALR 60

Query: 473 IMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDR 532
           + E    L  +G+    +G N   +RE P  ++++ I   + ++ D ++ +    +++  
Sbjct: 61  LKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYEMCDMLLLTKEV-SIKKY 119

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
              +   M+C  SI++  ++      +LL ++ +  N   C HGRP  +    SD+EK
Sbjct: 120 RAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCENPYNCPHGRPVLVHFTKSDMEK 177


>gi|323141917|ref|ZP_08076778.1| DNA mismatch repair protein, C-terminal domain
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413664|gb|EFY04522.1| DNA mismatch repair protein, C-terminal domain
           [Phascolarctobacterium sp. YIT 12067]
          Length = 518

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 118/279 (42%), Gaps = 4/279 (1%)

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK-LFLQENR 375
            +  + +  +  +    +    +    +  Q     T      +     QE  L + E R
Sbjct: 240 QLATASESLLVPEQPVPAVKKEQGEQQTMWQPFDDFTQTAATVSYSKGYQEPVLEVHEAR 299

Query: 376 LSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH 435
                  P++    ++          +         Q+ + +II+Q+   L ++DQHAAH
Sbjct: 300 SEFAKPQPAEAAPAADRETIAFTDTDSGMDTIWPIGQVDKTFIIAQSETTLYLIDQHAAH 359

Query: 436 ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAI 495
           ER++++K+        I SQ LL P  +D+   + ALI EH ++   LG+ A   G + +
Sbjct: 360 ERILYDKLVASHEQ--IPSQQLLMPLYVDMAADDIALIEEHRDEFLALGVDAASAGESLL 417

Query: 496 AIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +  +PA +   +    +  I   + +        D  + +L   AC  +I++G+ +   
Sbjct: 418 RVSSLPADIKADSAEDFINAISKMLREMRNVNG-SDLRQEVLHMTACKAAIKAGQLLNMR 476

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +M +L+ ++    +   C HGRP  I++  + + K+F R
Sbjct: 477 QMRQLIIDLCNTTHPFTCPHGRPCMIEIDSNQLYKMFKR 515



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/278 (21%), Positives = 112/278 (40%), Gaps = 23/278 (8%)

Query: 151 IPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERIS 210
           +PAR  FLK+   E   I++++ R+A++ P V F          ++     +G+    I 
Sbjct: 1   MPARRKFLKTVSTEGRYISELLTRLALSRPDVRFKLVNNDK---EVLSTPGDGDLEHAIR 57

Query: 211 QVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
            + G++   N +E++    ++ + G+ G PT  +G       F+NGR +  K +   +  
Sbjct: 58  ALYGKNVAENLLEVSLNDPKVRISGFIGKPTLLKGTRQWQTFFVNGRCIGSKMLSKAMDH 117

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG 330
           AY   IP   +P  V+ L++D   VDVNVHP KS I+F + ++I   + +++  A+ K  
Sbjct: 118 AYQSQIPKSGFPFAVINLKVDTASVDVNVHPQKSEIKFSDDSLIYKAMYKALTDALTKPM 177

Query: 331 --------------------ISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLF 370
                                 + S              AP+      A  +  T E+  
Sbjct: 178 SAKKTQVTLLPDSELNVFVKPQSISTPVTPAPQPKPAYQAPQPVFKSGAEPIFKTPERKE 237

Query: 371 LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
             +   ++  LL  + P  +   +  E+          
Sbjct: 238 DAQLATASESLLVPEQPVPAVKKEQGEQQTMWQPFDDF 275


>gi|196011772|ref|XP_002115749.1| hypothetical protein TRIADDRAFT_59762 [Trichoplax adhaerens]
 gi|190581525|gb|EDV21601.1| hypothetical protein TRIADDRAFT_59762 [Trichoplax adhaerens]
          Length = 817

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 146/372 (39%), Gaps = 37/372 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           KI+KL E   NQIA+   I   S  I+EL+ NS+DA+S+ +   +     +  ++ DNG 
Sbjct: 12  KIQKLDEDSRNQIASQLCINTFSQCIEELVLNSIDAKSTHILIAVDPNRLN-VEVCDNGD 70

Query: 62  GMTSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHL------TLMSRPP 113
           G+ SE +     RH TSK     +    H+ G+RGEA+ SI +++ +      ++ SR  
Sbjct: 71  GIDSENLRFVGLRHYTSKYVTRANLQAPHSIGYRGEAVASICSIAKIVEVQTRSITSRNT 130

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLITDVI 172
                       ++ +         GT V + D+F+++P R +   +    E ++I   +
Sbjct: 131 YTKKFVNGLSISDEPTVAEKSRNYIGTTVTLTDIFYSLPVRYHRTTTMWDRERHIIKQKL 190

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
             +AI Y +++       +    +       N    I  + G        +++  S+   
Sbjct: 191 EALAIIYYQITIILKNQVNGVILLKSHECC-NLAASIQCLYGITIKRTLQKMDFNSDNFQ 249

Query: 233 LQGYT-GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA---YAETIPLGRYPV----- 283
           L GY   I + N  N    Y+++NGR +    I   +        + I   R  +     
Sbjct: 250 LSGYIDTIHSDNNYNRYPQYIYLNGRLMHKNVIYDELNHTLLVIFKLINRHRKKMMTPNH 309

Query: 284 -----------------VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
                            + ++  + P    V +  + + I+F    I+ + I +   +  
Sbjct: 310 SSNCPQIARLSRLSDCYMYIIHIVCPISEYVVLETSSNKIQFIRQDIVLSGIKKLCYQYF 369

Query: 327 NKKGISTSSVLS 338
            +    T   L 
Sbjct: 370 TQNWWMTPEELH 381



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 10/212 (4%)

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           + P K+         +   ++++   A      +  S    K     +Q      +L + 
Sbjct: 565 ISPTKNVNAIPQARPLTKNLMKTNGIA----NSNVRSSYKIKRSHILYQSQMANYNLSQQ 620

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI--ACAQIHQN 416
            +    ++   F +    +    L S      +    V+         G     A   ++
Sbjct: 621 NSGSATSRLSAFKEFTSATIALKLTSSTLDNCQVIGQVDNKFIACVIKGYINYIAPYFRH 680

Query: 417 YIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST---KITSQTLLTPEIIDLLEGECALI 473
                  + LV++DQHAA ER+  EK+  D+       + S  +  P          + I
Sbjct: 681 LAGDNKENYLVLIDQHAADERIRLEKLLTDYCQKPEEGLLSVNVRPPIAHITSHNIFSAI 740

Query: 474 MEHDEDLHRLGIKA-ERFGPNAIAIREIPAIL 504
               + L RLGI+   +F      I  +P +L
Sbjct: 741 HNSRDSLRRLGIQFLSKFDGKTTEILSVPKLL 772


>gi|39945290|ref|XP_362182.1| hypothetical protein MGG_04627 [Magnaporthe oryzae 70-15]
 gi|145011315|gb|EDJ95971.1| hypothetical protein MGG_04627 [Magnaporthe oryzae 70-15]
          Length = 928

 Score =  159 bits (403), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 75/464 (16%), Positives = 165/464 (35%), Gaps = 53/464 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  + A  +I  P   +KEL++NS+DA+++ +E +++       ++ DNG
Sbjct: 1   MPIAPLPQDAVRLLRAHVVISTPVSVVKELLDNSIDAKATSIEVLVSRNTVDRIEVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+ + +     +R  TSK+  +D+  NI   + GFRGEAL ++ AV+ +T+ +R   ++
Sbjct: 61  VGIETRDFEALGRRGHTSKLKSADELENIGGTSLGFRGEALAAVAAVAKVTVTTRTAADD 120

Query: 117 TGAQIA--ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIR 173
           T        +G+        +   GT V   ++F  +P R    +K  +     +  ++ 
Sbjct: 121 TATVFDLLANGKGTLKNTIKSTPVGTTVTASEMFERLPVRKKVAIKEAKSTMVKMKQLLT 180

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQST-NGNFPERISQVIGEDFINNAVELNEK----- 227
             A+A P++  +   I      +++            + + G D +   VE+  K     
Sbjct: 181 AYALARPQLKLSIKEIGVAHPCLSYSPRLYATMKAAAACLFGSDLVAQCVEMTHKADAST 240

Query: 228 SNEITLQGYTGIPTFNR-------------------GNANQFYVFINGRTVQ-DKFILST 267
                  G    P                        +    +  ++ R V   + +   
Sbjct: 241 RRRNLADGVVSEPPDQCGGYIKIDALVPVPGIVPVKISNKGAFFSVDSRPVSASRTVFKK 300

Query: 268 IRTAYAETIPLG----------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
           I + + + I             + P + L ++      DV++ PAK  + F +   I + 
Sbjct: 301 IYSRFKKCISKSLEASDDGKQAKEPFIALNIKCPQGSYDVSIGPAKDDVLFTDEQGIIDA 360

Query: 318 IIQSIQKA--INKKGISTSSVLSKKMISSFHQDNAPKT--------HLPKYATSLTNTQE 367
                +    ++     T    +  +++S +     +                  + +  
Sbjct: 361 CDALFENTYGLSALQGETQRSSNMSLVNSVNSGEHMQNLGILSKNGSEKAGGIDFSPSPN 420

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
           +      +   +D    D  TY  +    + +            
Sbjct: 421 RPADASPQEPASDYTIFDHVTYVNNPPNNQTTSRDGQWSVRMMG 464


>gi|242022721|ref|XP_002431787.1| DNA mismatch repair protein, putative [Pediculus humanus corporis]
 gi|212517112|gb|EEB19049.1| DNA mismatch repair protein, putative [Pediculus humanus corporis]
          Length = 1233

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 8/279 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+KL  + I +  +G +I     ++ EL+ N+LDAESS +   +    K   Q+ DNG
Sbjct: 1   MSIQKLPPEAIVKFQSGNVITDLVQSVLELVYNALDAESSTILIRVDL-KKFLIQVIDNG 59

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGA 119
            G+   ++    +R+ TSK +  F +I+T+G++G+AL S+  V   L + +R   +N  A
Sbjct: 60  NGIGISDLEKVGERYMTSKYNSHFCSINTYGYKGQALSSLVEVCKTLRIETRTKGDNVTA 119

Query: 120 QIAISGEKISSVRPVAMNP--GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                  ++ ++   +     GT V V D  F++P R   + +E  +   +   ++ +++
Sbjct: 120 IKTFENGRMLNILHTSTKKDVGTFVSVEDFMFSMPVRKKRI-NEVFDLEELKTQLKYLSL 178

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT 237
            + KVSFT      N      Q TN    E   ++ G        +     N   ++G  
Sbjct: 179 IHHKVSFTLKNEHKNLILFQTQPTNSIL-ESTKKIFGVTMTKYLKKTTFSDNVFLIKGLI 237

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 R +++   +++N R +    I   +    +  I
Sbjct: 238 SKKP--RLSSSLQLIYVNNRVIAKGSIHKVVNDMISNHI 274



 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 22/180 (12%)

Query: 426  LVIVDQHAAHERLIFEKMRQDF------NSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
            + + DQHA  ER+  EK+  +       ++    S  L       L E    ++    E 
Sbjct: 1023 ITLFDQHAVDERIRLEKLMNENSTDYILDNDVFLSTPLTPAIECSLNESMVEIVTSFHEQ 1082

Query: 480  LHRLGIKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDEIIDS- 523
              ++G+  +      I ++ IP  L+ K                I  L+R  ++E+  + 
Sbjct: 1083 FEKIGLDCQPLTDKTILVKSIPKFLTDKCTKAKKSCQDSFIKSLIETLIRSALEELTATR 1142

Query: 524  STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             T   +   +     + AC+ +I+  +K+   EM+++++E++      QC HGRP+ I +
Sbjct: 1143 GTILKVPKILHKYFCSEACHNAIKFNKKLSLGEMSQMIKELKNCKLPFQCAHGRPSLIPI 1202


>gi|291233099|ref|XP_002736491.1| PREDICTED: PMS2 postmeiotic segregation increased 2-like, partial
           [Saccoglossus kowalevskii]
          Length = 532

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 102/260 (39%), Gaps = 6/260 (2%)

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
           +    S+ +    K ++    +      LP  A  L   Q      +    +        
Sbjct: 268 STSHESSQNTEVDKEVNIQRHEVKVPFSLPGIANRLKQCQGAKSDFKTAGRSFRAEIKPQ 327

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
              S + +   +     ++      Q +  +II +  + L IVDQHA  E+  FE +++ 
Sbjct: 328 DNKSAEEELQRKISKEMFKDMEVIGQFNLGFIIVKIKEDLFIVDQHATDEKYNFEMLQKH 387

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA---ERFGPNAIAIREIPAI 503
            N   I SQ L+ P+ ++L     +++M++ E   + G      E      + +  +P  
Sbjct: 388 TN---IQSQKLIQPQKLELTPVNESVLMDNLEIFQKNGFDFITEEGDTGKKVKLISLPMS 444

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
            +     Q + ++I  + D+  T     R+  + A+ AC  SI  G  +   EM +L+  
Sbjct: 445 KNWTFGKQDIDELIFMLNDAPGTMCRPSRVRQMFASRACRQSIMVGTALNKTEMKKLICH 504

Query: 564 MEKNPNSSQCNHGRPTFIKL 583
           M +      C HGRPT   L
Sbjct: 505 MGEIEQPWNCPHGRPTMRHL 524



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 10/181 (5%)

Query: 231 ITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
             L G    P     R   ++ + FIN R      +   +   Y       +YP VVL +
Sbjct: 32  FKLSGLVSKPDHGLGRSTCDRQFCFINKRPCDYSKVFKVLNEVYHMY-NRHQYPFVVLDI 90

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS------IQKAINKKGISTSSVLSKKMI 342
            +    VDVN+ P K  I       +   +  S       + A+ +      ++L     
Sbjct: 91  TLSKESVDVNITPDKRQILVAEEKTLLAVVKSSLIKLYEPRSALYQMNQKPMAILKSPSQ 150

Query: 343 SSFHQDNAPKTHLPK-YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEA 401
                     + L + Y+ S +   E       +   ++ + +   +  +  D  ++SE 
Sbjct: 151 PGPAIQTLTLSRLKRAYSHSGSVDIESPGRPAKQPRLDNFVIASSQSIGKTEDEKQDSEG 210

Query: 402 T 402
            
Sbjct: 211 F 211


>gi|270010115|gb|EFA06563.1| hypothetical protein TcasGA2_TC009474 [Tribolium castaneum]
          Length = 944

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 130/318 (40%), Gaps = 14/318 (4%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFS-NI 87
           + NSLDA+++ +   +        Q+ DNG G++   +    QR+ T+K    DD   ++
Sbjct: 36  VLNSLDAKATAIAVRV-NFTTFRLQVVDNGRGISRPNLEFVGQRYMTNKCHSLDDLHKHL 94

Query: 88  HTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK-ISSVRPVAMNPGTIVEVR 145
             +GF+GEAL +I  +S  +T+ +R   +       +  +K   +      + GT V V 
Sbjct: 95  KFYGFKGEALSNISHISQRVTVETREHNSEETFVKILEKDKQTINSSKCRASHGTTVTVE 154

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
                +P R   +K+   E   I   +  + I +P+VSFT       +  ++  +T  + 
Sbjct: 155 GFLHNLPVRQQCVKN--NELENIKRSLECLIIIHPRVSFTLRNDLGLKVVLSSVATP-DI 211

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFIL 265
                 +  E   N    L    N+  ++G          N    Y+++N R V    IL
Sbjct: 212 ASSFKTIHPEIDENEFALLKVGKNKTRVEGLIYKQL--HENKRLQYLYVNKRPVNSPKIL 269

Query: 266 STIRTAYAETI---PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI 322
           + +   +       P  + PV V+ ++     +D+ + PAK+ + FR   +++  + + I
Sbjct: 270 NFVNALFKTVPKTDPKRKNPVFVIHIKCPYSDIDITLEPAKTLVFFRKIDLVKRCLQKMI 329

Query: 323 QKAINKKGISTSSVLSKK 340
                      +    + 
Sbjct: 330 STFKGGDSEIVAKKTHRP 347



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 510 PQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
             L+++I+D +  ++         I+NI+ + AC G+I+ G  +   E    L+ + K  
Sbjct: 848 QTLIKEIVDLLKTNNEIMVNTPSLIQNIVNSEACRGAIKFGDSLTKNECFAHLKNLAKCK 907

Query: 569 NSSQCNHGRPTFIKL 583
              QC HGRPT   L
Sbjct: 908 LPFQCAHGRPTLTPL 922


>gi|315303087|ref|ZP_07873785.1| DNA mismatch repair protein MutL [Listeria ivanovii FSL F6-596]
 gi|313628542|gb|EFR96977.1| DNA mismatch repair protein MutL [Listeria ivanovii FSL F6-596]
          Length = 153

 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 1/152 (0%)

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA 502
            R+         Q LL P +++    E   + E    L  +G+  E FG N+  IR  P 
Sbjct: 1   YREKIGEVSRELQELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLESFGQNSYIIRAHPT 60

Query: 503 ILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
              K    + LR+IIDE + +S + ++    E+    M+C  SI++   +   +M  LL 
Sbjct: 61  WFPKGQEEETLREIIDEAL-TSPSISIHKLREDTAIMMSCKKSIKANHYLTMKDMEALLD 119

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
            + +  +   C HGRP  I+    ++EK+F R
Sbjct: 120 TLREASDPFTCPHGRPVIIQYSTYELEKMFKR 151


>gi|157418829|gb|ABV55120.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418831|gb|ABV55121.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418833|gb|ABV55122.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418835|gb|ABV55123.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418837|gb|ABV55124.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418839|gb|ABV55125.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418841|gb|ABV55126.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418843|gb|ABV55127.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418845|gb|ABV55128.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418847|gb|ABV55129.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418849|gb|ABV55130.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418851|gb|ABV55131.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418853|gb|ABV55132.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418855|gb|ABV55133.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418857|gb|ABV55134.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 336

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 15/206 (7%)

Query: 19  IIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           +I+RP    KEL+EN+ DA++  +   ++        + D G G+   +  +   R  TS
Sbjct: 1   VIQRPFNVAKELVENATDADAPTIRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATS 60

Query: 79  KIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------ 124
           KI    D  +I +FGFRGEAL SI  VS + ++S+         + I             
Sbjct: 61  KIETFSDIYSIQSFGFRGEALSSISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTS 120

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
                 +  +  +  TI+ V DLF+  P R N ++S +   +L  +++  ++ A P   +
Sbjct: 121 EHTDFFISTLKADSFTIICVTDLFYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREY 179

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERIS 210
           + S I + +       +  N  + IS
Sbjct: 180 SISFIDNPQAIQREIQSWLNDTQHIS 205


>gi|157418827|gb|ABV55119.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 336

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 15/206 (7%)

Query: 19  IIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           +I+RP    KEL+EN+ DA++  +   ++        + D G G+   +  +   R  TS
Sbjct: 1   VIQRPFNVAKELVENATDADAPTIRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATS 60

Query: 79  KIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------ 124
           KI    D  +I +FGFRGEAL SI  VS + ++S+         + I             
Sbjct: 61  KIETFSDIYSIQSFGFRGEALSSISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTS 120

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
                 +  +  +  TI+ V DLF+  P R N ++S +   +L  +++  ++ A P   +
Sbjct: 121 EHTDFFISTLKADSFTIICVTDLFYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREY 179

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERIS 210
           + S I + +       +  N  + IS
Sbjct: 180 SISFIDNPQAIQREIQSWLNDTQHIS 205


>gi|85111036|ref|XP_963744.1| hypothetical protein NCU09373 [Neurospora crassa OR74A]
 gi|28925469|gb|EAA34508.1| predicted protein [Neurospora crassa OR74A]
          Length = 772

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 154/425 (36%), Gaps = 46/425 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E     + +  +I  P   +KEL++N+LDA ++ VE +I+       ++ DNG
Sbjct: 1   MPILALPEDTRRFLGSALVITSPIFLVKELLDNALDAGATTVEILISPNTVDRVEVRDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G++  +     +   TSK+S   D  ++   + GFRG AL S  A++ + + +R    +
Sbjct: 61  SGISPSDFHHLGRPGHTSKLSSLKDLESVGCKSLGFRGVALASAAALAGIAICTRTSAES 120

Query: 117 TGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETN-LITDVIRR 174
               +  S E +++ R       GT V V DLF   P RL    SE   T   +  ++  
Sbjct: 121 VATILHFSREGVAAARGHKPAPAGTSVCVTDLFGAYPVRLKRATSEATATVLKVKGLLEC 180

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA------------- 221
            A+A P+V  +F  +   +      ++     + + QV+G +                  
Sbjct: 181 YALARPQVKLSFKVLGGKQSWSYVPTSGAALKDAVVQVMGRELAAQCMLQTSPFSVSDTE 240

Query: 222 --------VELNEKSNEITLQGYTGIPTFNRGNA---NQFYVFINGRTVQDKFILSTIRT 270
                   + L ++ ++   + Y   PT            ++ ++ R +      +    
Sbjct: 241 TKIPQTCNLPLAQQPSKFVFEAYL--PTTTADIRKICKGPFISVDSRPLSFTRGTAKKLK 298

Query: 271 AYAETIPLG-----------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII---RN 316
           A  E    G             P + L +       D NV P+K  + F N  ++     
Sbjct: 299 AVFEKHFKGSLIPENSSKLPGSPFIRLNIRCPLGSYDPNVEPSKYDVLFHNEELVLREFE 358

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRL 376
             + SI  A +     +S  LS +     +       H+    T             +  
Sbjct: 359 SFLLSIYPAKHNDAGPSSMDLSTEANGCVYDTGVADEHISTPQTQTGKGAAPTTPPTDEE 418

Query: 377 STNDL 381
             N  
Sbjct: 419 PPNQS 423


>gi|45198744|ref|NP_985773.1| AFR226Cp [Ashbya gossypii ATCC 10895]
 gi|44984754|gb|AAS53597.1| AFR226Cp [Ashbya gossypii ATCC 10895]
          Length = 704

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 136/356 (38%), Gaps = 30/356 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I ++ ++   ++ +   I  P+ A+KEL++N++DA +S V   +    GG  +  + D
Sbjct: 1   MGIHRIEDESKWKVVSASFIYSPTTAVKELLDNAIDAGASNVHIEVDSKTGGCDYISVRD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSH----LTLMSRP 112
           +G G+   +  M    H TSK+   +D S   T GFRGEAL  +  +S+    + + +R 
Sbjct: 61  DGNGVGVVDRHMMCLNHTTSKLRKYEDVSTCGTLGFRGEALFMLATLSNHCGTMEVSTRC 120

Query: 113 PQNNTGAQIAIS---GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLI 168
                G +  +      K  S   V M  GT V +R L   + AR   + S  +   + I
Sbjct: 121 KSERMGTRWQVDGSGEVKEGSTSSVPMPVGTTVTIRKLLHGLRARHVTISSRPRKSLDDI 180

Query: 169 TDVIRRMAIAYPKVSFTFSTIK--------SNRYKMNFQSTNGNFPERISQVIGEDFINN 220
           + ++ +  + + ++ F F  +           + ++N             Q        N
Sbjct: 181 SQLVLQYTLVFRRIRFHFYLVSLDRADFVCQRKLQLNVDPKLSLLRVLGLQARIRKLSGN 240

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYV------FINGRTVQDKFILSTIRTAYAE 274
             E        TL     +P+  RG              +N R +     L +       
Sbjct: 241 LHEFGPVPVTDTLSARGVLPSMTRGAEVTQTKKTIKAVALNRRPMSLSLSLGSAVNKMLN 300

Query: 275 TIPLGRY----PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
                       + ++ LE DP  VDVN+ P K      +   +   +  +++  I
Sbjct: 301 KTYRSYSLPDPTIWMVELECDPHLVDVNIEPTKDDAAISSLATLIQCLQDALEPII 356


>gi|317498492|ref|ZP_07956786.1| hypothetical protein HMPREF0996_01768 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894185|gb|EFV16373.1| hypothetical protein HMPREF0996_01768 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 135

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 1/131 (0%)

Query: 464 DLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS 523
            +   E   +  + +    LG   E FG N   IRE+PA L       L  +++D +   
Sbjct: 4   TVSMTEAEALTRYKDAFAGLGFTIESFGGNEYCIREVPANLYGIGERDLFMELLDAVSQE 63

Query: 524 STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           + T    + I + +ATMAC  SI+  +++  +E+  LL E+ K  N  QC HGRPT IK+
Sbjct: 64  NGTLD-TEVIASKIATMACKMSIKGNQRVSLMEVEHLLDELMKLENPYQCPHGRPTIIKM 122

Query: 584 KLSDIEKLFGR 594
              +I+K F R
Sbjct: 123 SKYEIDKKFKR 133


>gi|313608841|gb|EFR84628.1| DNA mismatch repair protein MutL [Listeria monocytogenes FSL
           F2-208]
          Length = 145

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLR 514
           Q LL P +++    E   + E    L  +G+  E FG N+  IR  P    K    ++LR
Sbjct: 5   QELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLR 64

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +IIDE + +  + ++    E+    M+C  SI++   + + +M  LL  + +  +   C 
Sbjct: 65  EIIDEALSAP-SISIHKLREDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCP 123

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRP  I+    ++EK+F R
Sbjct: 124 HGRPVIIQYSTYELEKMFKR 143


>gi|321257301|ref|XP_003193541.1| mismatch repair-related protein [Cryptococcus gattii WM276]
 gi|317460011|gb|ADV21754.1| Mismatch repair-related protein, putative [Cryptococcus gattii
           WM276]
          Length = 760

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 16/282 (5%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITD 58
           M  I  L       + +  I+   +    EL++NSLDA ++++E  +    G    ++ D
Sbjct: 1   MPDILPLPRPTSTTLRSSIILPSLAQIFSELLQNSLDAGATKIECYVNMAKGSESLRVED 60

Query: 59  NGFGMTSEEIPMAVQRHCTSK-ISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           +G G++ + +    +R  TSK I +     + ++GFRGEAL SI ++S L + +R     
Sbjct: 61  DGTGISKDGLAKIGKRFRTSKEIHEGGLGPVGSYGFRGEALASIASLSLLDITTRRASFP 120

Query: 117 TGAQIAISGEKIS----SVRPVAMNPGTIVEVRDLFFTIPARLNF--LKSEQVETNLITD 170
              +I    + +       R +A   GT V VR++F TIP R       S  +    +  
Sbjct: 121 VYTKILKHSKTLFEGPNPDRHIAGGHGTTVVVREIFRTIPVRREELAATSSTLLMTQLKK 180

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRY----KMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
           V+  +A+  P V +     +S       ++   + + +  +    + G   +++  ++  
Sbjct: 181 VVETLALGNPGVRWVLWEERSTGTGGLKRIMGVNASESALDVFKSLYGSALVHSVQKIRV 240

Query: 227 KSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI 268
            + +  + G+         +    +++IN   +    I + I
Sbjct: 241 TAGKKKVDGFIS--ISGDVSKAHQHLYINKYPIDRGDIHTAI 280



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 71/234 (30%), Gaps = 57/234 (24%)

Query: 407 GIACAQIHQNYIISQTTDG-----LVIVDQHAAHERLIFEKMRQDFNST-------KITS 454
           GI   Q+ Q +I            L +VDQHAA ER+  EK+  +               
Sbjct: 488 GIVLGQVDQKFIAVVLHTTINLTTLALVDQHAADERISVEKVLLELCEGFARDDLSVAEL 547

Query: 455 QTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA------IAIREIPAIL---- 504
                  I+   E              R GI+       +      + +  +P  L    
Sbjct: 548 TKTQPMIILTQAETRILSQPGVLPLFKRWGIRLTVPSELSQGEYVQVKVDAVPLALLNRL 607

Query: 505 ---SKKNIPQLLRDIIDEIIDSSTTYT--------------------------------L 529
                  + +L+R  +  + + +   T                                +
Sbjct: 608 GRKEGLEMTRLVRGYLPVVEEHTGEITNLVKNLEGKAMVGGEGGDIEGYGGDWGRVMRFM 667

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              +  +  + AC G+I    ++   +  RL+ ++ +      C HGRP+ + L
Sbjct: 668 PREMLELANSKACRGAIMFEDRLSYDQCGRLVHQLSRTRFPFMCAHGRPSMVPL 721


>gi|76799858|ref|ZP_00781892.1| DNA mismatch repair protein HexB [Streptococcus agalactiae 18RS21]
 gi|76584789|gb|EAO61513.1| DNA mismatch repair protein HexB [Streptococcus agalactiae 18RS21]
          Length = 377

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 150/372 (40%), Gaps = 50/372 (13%)

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           S  G+  + I+ + G +     +E++    +  + GY  +P   R N N   + INGR +
Sbjct: 5   SGTGDLRQAIAGIYGLNTAKKMIEISNADLDFEISGYVSLPELTRANRNYITLLINGRYI 64

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           ++  +  +I   Y   + +GR+P+ V+ ++IDP   DVNVHP K  +R      + + I 
Sbjct: 65  KNFLLNRSILDGYGSKLMVGRFPIAVIDIQIDPYLADVNVHPTKQEVRISKERELMSLIS 124

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP----------------------- 356
            +I +++ +  +   ++ +    S+   D   +T                          
Sbjct: 125 TAISESLKQYDLIPDALENLAKTSTRSVDKPIQTSFSLKQPGLYYDRAKNDFFIGADTVS 184

Query: 357 ----------------------KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN- 393
                                       T +    +   ++  + + + S D   S+ + 
Sbjct: 185 EPIANFTNLDKSDGSVDNDVKNSVNQGATQSPNIKYASRDQADSENFIHSQDYLSSKQSL 244

Query: 394 ----DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
               + ++  E++ +       Q+H  Y+ +Q   GL I+DQHAA ER+ +E  R+    
Sbjct: 245 NKLVEKLDSEESSTFPELEFFGQMHGTYLFAQGNGGLYIIDQHAAQERVKYEYYREKIGE 304

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
              + Q LL P + +    +   + E    L  +GI  E +G N   +RE P  + ++ +
Sbjct: 305 VDNSLQQLLVPFLFEFSSSDFLQLQEKMSLLQDVGIFLEPYGNNTFILREHPIWMKEEEV 364

Query: 510 PQLLRDIIDEII 521
              + ++ D ++
Sbjct: 365 ESGIYEMCDMLL 376


>gi|149046218|gb|EDL99111.1| similar to postmeiotic segregation increased 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 830

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 4/139 (2%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ + I      +KELIENSLDA ++ ++  +   G    +I DNG G+
Sbjct: 2   KQLPAATVRLLSSSQTITSVVSVVKELIENSLDAGANSIDVKLENYGFDKIEIRDNGAGI 61

Query: 64  TSEEIPMAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTL--MSRPPQNNTGA 119
            + ++P+   ++ TSKI   +D   + T+GFRGEAL +I  V+   +   SR P +    
Sbjct: 62  KAVDVPVMAVKYYTSKISSHEDLQTLTTYGFRGEALGAICNVAEAVIWQKSRVPDHRMAL 121

Query: 120 QIAISGEKISSVRPVAMNP 138
              +    + ++  V    
Sbjct: 122 MSVLGTAVMGNMESVERYC 140



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 105/317 (33%), Gaps = 30/317 (9%)

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQGYTGIPTF-----NRGNA 247
            +  +S   +    +  V+G   + N   VE   + ++I L+G            +    
Sbjct: 107 VIWQKSRVPDHRMALMSVLGTAVMGNMESVERYCEDSQIHLRGLFPKHDADHNSTSLSTP 166

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQVDVNVHPAKS 304
            + ++FIN R V  K IL  IR  Y           YP+  L +++   +VD+N+ P KS
Sbjct: 167 ERSFIFINSRPVHQKDILKLIRHYYNLKCLKESTRLYPIFFLKIDVPSAEVDINLTPDKS 226

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTN 364
            +  +N   +   +   +         + S   ++  +SS +   +  T        L N
Sbjct: 227 QVLLQNKESVLIALENLLMTCYGPLPTTESYENNRVDVSSANVVISETTETDV----LFN 282

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA---QIHQNYIISQ 421
             E    +     T  +   +D +    +  + E     +  G        I+++   + 
Sbjct: 283 KMESSGNKYPNADTLAIPFQNDESRKNTDHHLNEQINIGHCDGHFSGEYSHINKDTFQNI 342

Query: 422 TTDGLVIVDQHAAH---------ERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECAL 472
             + L      + H         E +  E  R          +  L  + +++   + + 
Sbjct: 343 PRNNLSSEANQSKHSETHSAGSIEHIQGENGRSGTGENGEDGKKTLPEKALEICADDWSK 402

Query: 473 IMEHDEDLHRLGIKAER 489
                   + +G   E 
Sbjct: 403 GN----VFNSMGENIEP 415


>gi|320586173|gb|EFW98852.1| DNA mismatch repair protein [Grosmannia clavigera kw1407]
          Length = 742

 Score =  153 bits (386), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/456 (15%), Positives = 153/456 (33%), Gaps = 72/456 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L       + A  +I  P   +KEL++N++DA ++ +E +IA       ++ D+G
Sbjct: 1   MSIKALPADATRLLDASSLIVDPVGLVKELVDNAIDAHATSIEVLIAPNTIDKIEVRDDG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIH----TFGFRGEALPSIGAVSHLTLMSRPPQ 114
            G+   +     +   TSK++  +D         + GFRG+ L +  A+ ++ + +R   
Sbjct: 61  HGILRADYDFLGRPGHTSKLTCLEDLRTRTSDDASLGFRGQGLAAATALGYVAITTRTRT 120

Query: 115 NNTGAQIAISGEKISSV---------RPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVE 164
           +   A   ++    S           +P     GT V V  LF + P R    +K     
Sbjct: 121 DTVAATFRLTSVSASRHSGGIVAESLKPSPAPVGTSVTVTCLFSSFPVRRCMAMKDSART 180

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN-------------FPERISQ 211
              I +++   A A P++  TF   +  +    +                     E    
Sbjct: 181 LAAIKELLYGYAFARPQLRLTFKVFQKPQMAWKYFHRPTQQVIPAEADRCGVEMREATRV 240

Query: 212 VIGEDFINNA-------------------------VELNEKSNEITLQGYTGIPTFN-RG 245
           + G +                              +  ++    +  Q +   P  +   
Sbjct: 241 LFGNEVARQCQDVVVSAADLYALSAGGGQLTLAQSLPGDDTICGLVFQAFLPRPGVDLSK 300

Query: 246 NANQFYVFINGRTVQDKFILSTIRT--------------AYAETIPLGRYPVVVLLLEID 291
            A   +V ++GR +  +     +                + +          + L ++  
Sbjct: 301 LALGGFVSVDGRPLSARHRGGIVCRLLALYRRHLARSTLSVSHQQMHINNAFIRLNIKCP 360

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNF---IIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
               D NV  +K+ + F N  ++ +    +   +  AI        S +S+   +     
Sbjct: 361 AGSYDSNVESSKTDVLFVNEQLLCDAFERLCIRLYGAIEPYKSQPQSSVSRHATAGTGHV 420

Query: 349 NAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPS 384
           +  ++ L + +    +++  +      + + D   S
Sbjct: 421 SGSQSILRQSSIIGMSSRPAVTPYSGPIMSLDEQHS 456


>gi|332215526|ref|XP_003256895.1| PREDICTED: DNA mismatch repair protein Mlh1 isoform 2 [Nomascus
           leucogenys]
          Length = 658

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 5/235 (2%)

Query: 95  EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPA 153
           EAL SI  V+H+T+ ++        + + S  K+    +P A N GT + V DLF+ I  
Sbjct: 4   EALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIAT 63

Query: 154 RLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
           R   LK+   E   I +V+ R +I    +SF+          +          + I  + 
Sbjct: 64  RRKALKNPSEEYGKILEVVGRYSIHNAGISFSVKKQGETVADVRTLPNASTV-DNIRSIF 122

Query: 214 GEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
           G       +E+  +       + GY     ++        +FIN R V+   +   I T 
Sbjct: 123 GNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETV 181

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 182 YAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 236


>gi|297671748|ref|XP_002813992.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Pongo abelii]
          Length = 658

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 5/235 (2%)

Query: 95  EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPA 153
           EAL SI  V+H+T+ ++        + + S  K+    +P A N GT + V DLF+ I  
Sbjct: 4   EALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIAT 63

Query: 154 RLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
           R   LK+   E   I +V+ R +I    +SFT          +          + I  + 
Sbjct: 64  RRKALKNPNEEYGKILEVVGRYSIHNAGISFTVKKQGETVADVRTLPNASTV-DNIRSIF 122

Query: 214 GEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
           G       +E+  +       + GY     ++        +FIN R V+   +   I T 
Sbjct: 123 GNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETV 181

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 182 YAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 236


>gi|50284983|ref|XP_444920.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524222|emb|CAG57813.1| unnamed protein product [Candida glabrata]
          Length = 679

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 91/509 (17%), Positives = 184/509 (36%), Gaps = 36/509 (7%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I+ +      +I A   I  P  A++ELI+NS+D+    +   I    GG  +  + D
Sbjct: 1   MPIKGIIADEKWKIFASSFIVEPKAAVRELIDNSIDSGCQNIYVSIDSKTGGCEYISVRD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGA----VSHLTLMSRP 112
           +G G+   +  +    + TSKI+  DD   I T GFRGEAL  I      V  L ++++ 
Sbjct: 61  DGPGVPQPDRKLMCLNNTTSKINSLDDLDKISTLGFRGEALFLIANLCCEVGTLEIITKC 120

Query: 113 PQNNTGAQIAISGE---KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE-QVETNLI 168
              + G +  I      K  SVR      GT+V +R L     +R     S+ +     +
Sbjct: 121 KDESVGEKWYIQKNGSIKPKSVRKAPATTGTVVTLRKLLGGFKSREIDQSSKARKTIEDL 180

Query: 169 TDVIRRMAIAYPKVSFTF-----STIKSNRYKMNFQSTNGNFPE----RISQVIGEDFIN 219
             ++   A+ +  + F+F     +   S   K    S   N        +   + +    
Sbjct: 181 KTILYHYALNFRNIRFSFELVSLNKNGSIAQKQLQLSVAPNLTRPRLLSLIANLRKPTNI 240

Query: 220 NAVEL------NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILS----TIR 269
           N VE       ++   ++ L              +  ++ +N R +  K         + 
Sbjct: 241 NFVENASLEITDKIDIQLILPTMIPQSDAVNVKKSYKFLSVNNRALSRKLAFGKEFDRML 300

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
           ++    + L    V  + +  +P+ +DVN+ P K  I  ++ T +   +   I+  + +K
Sbjct: 301 SSIYRRLQLLEPNVWYVNIISEPQLIDVNIEPEKDDILLKDETKVIQKMDNIIELYLREK 360

Query: 330 GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT--QEKLFLQENRLSTNDLLPSDDP 387
            ++ +  +S     SF Q  A  + + ++  S      Q  + +             +  
Sbjct: 361 -LNINPTVSITNSPSFKQFAANTSVMLEHNESCDEPVDQSTMPILTPTSKNITEAIIESE 419

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDF 447
             +     +     +      + +++++  I +     L   D   +H      K+    
Sbjct: 420 NGNNSEPRITYEADSTNMGFKSISEVNRTGISNSQIHNL-PNDSSNSH-FDNTTKLSHGI 477

Query: 448 NSTKITSQTLLTPEIIDLLEGECALIMEH 476
           N   + S   +  +          +  E+
Sbjct: 478 NQDNLNSSDQVNTQQNTFRNSMTHVGHEY 506


>gi|263191589|ref|NP_001161089.1| DNA mismatch repair protein Mlh1 isoform 2 [Homo sapiens]
          Length = 658

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 5/235 (2%)

Query: 95  EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPA 153
           EAL SI  V+H+T+ ++        + + S  K+    +P A N GT + V DLF+ I  
Sbjct: 4   EALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIAT 63

Query: 154 RLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
           R   LK+   E   I +V+ R ++    +SF+          +          + I  + 
Sbjct: 64  RRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTV-DNIRSIF 122

Query: 214 GEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
           G       +E+  +       + GY     ++        +FIN R V+   +   I T 
Sbjct: 123 GNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETV 181

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 182 YAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 236


>gi|332816400|ref|XP_001170253.2| PREDICTED: DNA mismatch repair protein Mlh1 isoform 2 [Pan
           troglodytes]
          Length = 658

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 5/235 (2%)

Query: 95  EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPA 153
           EAL SI  V+H+T+ ++        + + S  K+    +P A N GT + V DLF+ I  
Sbjct: 4   EALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIAT 63

Query: 154 RLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
           R   LK+   E   I +V+ R +I    +SF+          +          + I  + 
Sbjct: 64  RRKALKNPSEEYGKILEVVGRYSIHNAGISFSVKKQGETVADVRTLPNASTV-DNIRSIF 122

Query: 214 GEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
           G       +E+  +       + GY     ++        +FIN R V+   +   I T 
Sbjct: 123 GNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETV 181

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 182 YAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 236


>gi|194391310|dbj|BAG60773.1| unnamed protein product [Homo sapiens]
          Length = 658

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 5/235 (2%)

Query: 95  EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVRDLFFTIPA 153
           EAL SI  V+H+T+ ++        + + S  K+    +P A N GT + V DLF+ I  
Sbjct: 4   EALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIAT 63

Query: 154 RLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
           R   LK+   E   I +V+ R ++    +SF+          +          + I  + 
Sbjct: 64  RRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTV-DNIRSIF 122

Query: 214 GEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
           G       +E+  +       + GY     ++        +FIN R V+   +   I T 
Sbjct: 123 GNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETV 181

Query: 272 YAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           YA  +P   +P + L LEI P+ VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 182 YAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 236


>gi|323353916|gb|EGA85769.1| Mlh2p [Saccharomyces cerevisiae VL3]
          Length = 602

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 158/390 (40%), Gaps = 32/390 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I +LS +   +I +   I  P  A++EL++NS+D+ + +V   +    GG  +  + D
Sbjct: 1   MTIHQLSPESQWKIVSSSFIYGPVAAVRELLDNSIDSGAKKVFIDVDSTTGGCEYISVKD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH----LTLMSRP 112
           +G G+   + P     + TSK+S   D S + T GFRGEAL  +  + +    + + ++ 
Sbjct: 61  DGSGVDIIDRPSMCLEYTTSKMSSLGDISILTTLGFRGEALFLLSNLCNQKGSMQVETKT 120

Query: 113 PQNNTGAQIAISG---EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLI 168
             +  G +  +             V+   GT V +R L   + AR   + S  +   + +
Sbjct: 121 ADDVIGEKWLVDSKGGITNGKRYKVSCPVGTTVTLRKLLGGLRARYLEISSRPRKTFDEL 180

Query: 169 TDVIRRMAIAYPKVSFTFSTI----------KSNRYKMNFQSTNGNFPERISQVIGE--- 215
             +I   ++ +  + F FS +          K  +  ++ + +       ++++      
Sbjct: 181 IYLINHYSLIHRNIRFYFSLVSLQKNGAIERKQMQETLDPKISRARSLSLLARLKKPVPL 240

Query: 216 --DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                 N V   + + ++ L                 ++ +N R +          +   
Sbjct: 241 NFIVEENFVIDEKINLDLILPRMVPESDVINIKRRFKFLSVNERALSLNLETGKTISKLL 300

Query: 274 ETIPLGRY---PVVV-LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            +I        P+V  + L  D + +DVN+ P K+ +  ++  +I   I   ++  + ++
Sbjct: 301 SSIYRDFSLLDPMVWFINLNCDTKLLDVNIEPEKNDVMIKSFEVIFKKIENKLKLLLEER 360

Query: 330 -GISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            GI T+ +  K +  S ++  +P   +P  
Sbjct: 361 IGIETNMLGDKHVQPSINEKTSPALVIPTP 390


>gi|256269178|gb|EEU04510.1| Mlh2p [Saccharomyces cerevisiae JAY291]
          Length = 695

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 158/390 (40%), Gaps = 32/390 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I +LS +   +I +   I  P  A++EL++NS+D+ + +V   +    GG  +  + D
Sbjct: 1   MTIHQLSPESQWKIVSSSFIYGPVAAVRELLDNSIDSGAKKVFIDVDSTTGGCEYISVKD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH----LTLMSRP 112
           +G G+   + P     + TSK+S   D S + T GFRGEAL  +  + +    + + ++ 
Sbjct: 61  DGSGVDIIDRPSMCLEYTTSKMSSLGDISILTTLGFRGEALFLLSNLCNQKGSMQVETKT 120

Query: 113 PQNNTGAQIAISG---EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLI 168
             +  G +  +             V+   GT V +R L   + AR   + S  +   + +
Sbjct: 121 ADDVIGEKWLVDSKGGITNGKRYKVSCPVGTTVTLRKLLGGLRARYLEISSRPRKTFDEL 180

Query: 169 TDVIRRMAIAYPKVSFTFSTI----------KSNRYKMNFQSTNGNFPERISQVIGE--- 215
             +I   ++ +  + F FS +          K  +  ++ + +       ++++      
Sbjct: 181 IYLINHYSLIHRNIRFYFSLVSLQKNGAIERKQMQETLDPKISRARSLSLLARLKKPVPL 240

Query: 216 --DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                 N V   + + ++ L                 ++ +N R +          +   
Sbjct: 241 NFIVEENFVIDEKINLDLILPRMVPESDVINIKRRFKFLSVNERALSLNLETGKTISKLL 300

Query: 274 ETIPLGRY---PVVV-LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            +I        P+V  + L  D + +DVN+ P K+ +  ++  +I   I   ++  + ++
Sbjct: 301 SSIYRDFSLLDPMVWFINLNCDTKLLDVNIEPEKNDVMIKSFEVIFKKIENKLKLLLEER 360

Query: 330 -GISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            GI T+ +  K +  S ++  +P   +P  
Sbjct: 361 IGIETNMLGDKHVQPSINEKTSPALVIPTP 390


>gi|151941204|gb|EDN59582.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190406075|gb|EDV09342.1| hypothetical protein SCRG_05022 [Saccharomyces cerevisiae RM11-1a]
          Length = 695

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 158/390 (40%), Gaps = 32/390 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I +LS +   +I +   I  P  A++EL++NS+D+ + +V   +    GG  +  + D
Sbjct: 1   MTIHQLSPESQWKIVSSSFIYGPVAAVRELLDNSIDSGAKKVFIDVDSTTGGCEYISVKD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH----LTLMSRP 112
           +G G+   + P     + TSK+S   D S + T GFRGEAL  +  + +    + + ++ 
Sbjct: 61  DGSGVDIIDRPSMCLEYTTSKMSSLGDISILTTLGFRGEALFLLSNLCNQKGSMQVETKT 120

Query: 113 PQNNTGAQIAISG---EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLI 168
             +  G +  +             V+   GT V +R L   + AR   + S  +   + +
Sbjct: 121 ADDVIGEKWLVDSKGGITNGKRYKVSCPVGTTVTLRKLLGGLRARYLEISSRPRKTFDEL 180

Query: 169 TDVIRRMAIAYPKVSFTFSTI----------KSNRYKMNFQSTNGNFPERISQVIGE--- 215
             +I   ++ +  + F FS +          K  +  ++ + +       ++++      
Sbjct: 181 IYLINHYSLIHRNIRFYFSLVSLQKNGAIERKQMQETLDPKISRARSLSLLARLKKPVPL 240

Query: 216 --DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                 N V   + + ++ L                 ++ +N R +          +   
Sbjct: 241 NFIVEENFVIDEKINLDLILPRMVPESDVINIKRRFKFLSVNERALSLNLETGKTISKLL 300

Query: 274 ETIPLGRY---PVVV-LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            +I        P+V  + L  D + +DVN+ P K+ +  ++  +I   I   ++  + ++
Sbjct: 301 SSIYRDFSLLDPMVWFINLNCDTKLLDVNIEPEKNDVMIKSFEVIFKKIENKLKLLLEER 360

Query: 330 -GISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            GI T+ +  K +  S ++  +P   +P  
Sbjct: 361 IGIETNMLGDKHVQPSINEKTSPALVIPTP 390


>gi|66358254|ref|XP_626305.1| PMS1'MutL family ATpase' [Cryptosporidium parvum Iowa II]
 gi|46228008|gb|EAK88928.1| PMS1'MutL family ATpase' [Cryptosporidium parvum Iowa II]
          Length = 971

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/566 (15%), Positives = 194/566 (34%), Gaps = 96/566 (16%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           +KLS++  ++I + ++I      IKEL++N++DA  + +   +   G S  ++ DNG G+
Sbjct: 19  KKLSKEDQDRICSQQVITELQDCIKELVDNAIDAGCTEILISLTDFGSSTIEVLDNGKGI 78

Query: 64  TSEEIPMAVQRHCTSK------ISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQ-- 114
             E++    +R  TSK      I +D     T GFRGE L SI   S  + + ++     
Sbjct: 79  --EDLNKIGERGVTSKLENFDNIHEDL---STLGFRGEGLNSIINSSEIVEIDTKYDNKE 133

Query: 115 ------------NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSE 161
                            +              +   GT + V  LF    +R     ++ 
Sbjct: 134 NKIVFEKGKCLIEELIIENKNQNSDKFHKYHFSSKSGTRIRVIGLFLPYISRRTQFLRNI 193

Query: 162 QVETNLITDVIRRMAIAYPKVSF---------------------------TFSTIKSNRY 194
           +++   +  +I   AI YP + F                            + + +    
Sbjct: 194 RLQLKSLIVLIEEYAICYPMIRFLLSNRTLSDTEKEKIHKRLLIGESSEIKYQSNQIQSE 253

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI---------------------TL 233
            +  +    +  E    + G+  + N+++   +                          +
Sbjct: 254 LIMTRGKVSSQKEVAQYIWGKSVLGNSLDFKLEGEVFVPKLQNMDSKIQDESLVGGKWII 313

Query: 234 QGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP----LGRYPVVVLLLE 289
            G+       R + +     +N R V     +S + ++   T+        YP  V+ + 
Sbjct: 314 SGFISSLDKGRPSPDHQIFTVNNRPVDPIKRISRVISSIHSTLSSFNNRKLYPAFVINIH 373

Query: 290 IDPRQVDVNVHPAKSYIRF--RNPTIIRNFIIQSIQKAINKKGISTSSVLSKK------- 340
           +    +D+NV P K  +    +  T++   I Q +Q +             +        
Sbjct: 374 LPQSLLDINVTPNKRIVMLPAKVETVLAENIQQFLQDSYQNNIPIKREEFMENRYQNSIL 433

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN--DLLPSDDPTYSEDNDPVEE 398
              S  QD+          +S    ++K+ L  N L+ N  +   + +  +SE++  + E
Sbjct: 434 NYPSTSQDHLTTEISQSQISSSQKPKDKVVLSYNHLTDNLSNSGKAPELVFSEESSRLGE 493

Query: 399 ----SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK--MRQDFNSTKI 452
                +  +        +I          + + +  Q    +R   ++  +R+ + +  +
Sbjct: 494 KKINEDEKNNNESENKDEISNTSFSESKMESIELSHQTIGTKRHRSDEVSLREFYPNDFL 553

Query: 453 TSQTLLTPEIIDLLEGECALIMEHDE 478
           T+Q   +     +L      + E  +
Sbjct: 554 TNQEKDSNIRKIVLPSFNENMDEGMD 579



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            + I+DQHA+ E+  FEK+  D ++  I +Q L++P  + L   +  L++ + +   + G
Sbjct: 775 HIFIIDQHASDEKARFEKLNSDLSN--IQTQKLISPLSVSLTPSQEQLVISYKDIFEQNG 832

Query: 485 IKAERFGPNA-----IAIREIPAILSKKNIPQLLRDIIDEIIDSS-TTYTLQDRIENIL 537
            +   F  N+     I + ++P IL          D++ +I         + D    IL
Sbjct: 833 FRF-IFNSNSEIGSRIQLTQLPVILGIPLKQIDFLDLLSQINKYKVRVSIIDDSKSKIL 890


>gi|260801094|ref|XP_002595431.1| hypothetical protein BRAFLDRAFT_69263 [Branchiostoma floridae]
 gi|229280677|gb|EEN51443.1| hypothetical protein BRAFLDRAFT_69263 [Branchiostoma floridae]
          Length = 219

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 86/204 (42%), Gaps = 7/204 (3%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S     + +++   E     +       Q +  +II++    L I+DQHA  E+  FE +
Sbjct: 11  SPSDNQAAEDELRREISKDKFTQMEILGQFNLGFIIARLGGDLFIIDQHATDEKYNFEML 70

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP----NAIAIRE 499
           ++   +T +  Q L+ P+ + L     +++M++ +   + G +            + +  
Sbjct: 71  QR---NTVLQGQRLIQPQSLHLTAANESILMDNMDIFRKNGFEFTIQEDAPCTERVKLVS 127

Query: 500 IPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
           +P   +     + + ++I  + D+        R+  + A+ AC  S+  G  +   EM +
Sbjct: 128 MPVSKNWTFGKEDIEELIFMLSDAPGVMCRPSRVRQMFASRACRKSVMIGTALNRGEMQQ 187

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           LL  M +      C HGRPT   L
Sbjct: 188 LLTHMGEIEQPWNCPHGRPTMRHL 211


>gi|6323063|ref|NP_013135.1| Mlh2p [Saccharomyces cerevisiae S288c]
 gi|74627237|sp|Q07980|MLH2_YEAST RecName: Full=DNA mismatch repair protein MLH2; AltName: Full=MutL
           protein homolog 2
 gi|1360354|emb|CAA97559.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813457|tpg|DAA09353.1| TPA: Mlh2p [Saccharomyces cerevisiae S288c]
          Length = 695

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 158/390 (40%), Gaps = 32/390 (8%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I +LS +   +I +   I  P  A++EL++NS+D+ + +V   +    GG  +  + D
Sbjct: 1   MTIHQLSPESQWKIVSSSFIYGPVAAVRELLDNSIDSGAKKVFIDVDSTTGGCEYISVKD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH----LTLMSRP 112
           +G G+   + P     + TSK+S   D S + T GFRGEAL  +  + +    + + ++ 
Sbjct: 61  DGSGVDIIDRPSMCLEYTTSKMSSLGDISILTTLGFRGEALFLLSNLCNQKGSMQVETKT 120

Query: 113 PQNNTGAQIAISG---EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLI 168
             +  G +  +             V+   GT V +R L   + AR   + S  +   + +
Sbjct: 121 ADDVIGEKWLVDSKGGITNGKRYKVSCPVGTTVILRKLLGGLRARYLEISSRPRKTFDEL 180

Query: 169 TDVIRRMAIAYPKVSFTFSTI----------KSNRYKMNFQSTNGNFPERISQVIGE--- 215
             +I   ++ +  + F FS +          K  +  ++ + +       ++++      
Sbjct: 181 IYLINHYSLIHRNIRFYFSLVSLQKNGAIERKQMQETLDPKISRARSLSLLARLKKPVPL 240

Query: 216 --DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYA 273
                 N V   + + ++ L                 ++ +N R +          +   
Sbjct: 241 NFIVEENFVIDEKINLDLILPRMVPESDVINIKRRFKFLSVNERALSLNLETGKTISKLL 300

Query: 274 ETIPLGRY---PVVV-LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK 329
            +I        P+V  + L  D + +DVN+ P K+ +  ++  +I   I   ++  + ++
Sbjct: 301 SSIYRDFSLLDPMVWFINLNCDTKLLDVNIEPEKNDVMIKSFEVIFKKIENKLKLLLEER 360

Query: 330 -GISTSSVLSKKMISSFHQDNAPKTHLPKY 358
            GI T+ +  K +  S ++  +P   +P  
Sbjct: 361 IGIETNMLGDKHVQPSINEKTSPALVIPTP 390


>gi|330945642|gb|EGH47128.1| DNA mismatch repair protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 290

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 6/259 (2%)

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF 198
           GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A   V+F           ++ 
Sbjct: 3   GTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALARFDVAFHLRHNGKTVLSLHE 62

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRT 258
              +     R+S + G  F+  A+ +  + N + L G+ G+PTF+R  A+  Y F+NGR 
Sbjct: 63  AHDDTARARRVSAICGPGFLEQALPIEIERNGLHLWGWVGLPTFSRSQADLQYFFVNGRA 122

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
           V+DK +   +R AY + +  GR+P  VL  E+DP  VDVNVHP K  +RFR+  ++ +F+
Sbjct: 123 VRDKLVAHAVRQAYRDVLFNGRHPTFVLFFEVDPAAVDVNVHPTKHEVRFRDGRMVHDFL 182

Query: 319 IQSIQKAI------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
             ++ +A+      N  G S   V   +       +  P+  +      L   Q + F +
Sbjct: 183 YGTLYRALGDVRPENHLGGSVPVVAETRPSGPEAGEFGPQGEMRLANNVLEQPQGEPFSR 242

Query: 373 ENRLSTNDLLPSDDPTYSE 391
                          T   
Sbjct: 243 PAAGGGAGSGYQYQYTPRP 261


>gi|302654774|ref|XP_003019186.1| hypothetical protein TRV_06792 [Trichophyton verrucosum HKI 0517]
 gi|291182893|gb|EFE38541.1| hypothetical protein TRV_06792 [Trichophyton verrucosum HKI 0517]
          Length = 180

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  I +   +   S  +KEL++N+LDA ++ +   I+       Q+ DNG
Sbjct: 45  MSIVALEDPAVRAIGSTSALPDSSSVVKELLDNALDAGATSIFIEISLNTLDIIQVKDNG 104

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+   +  +A +++ TSKI  ++D  N+   + GFRG+AL SI  +S  + + +R P+ 
Sbjct: 105 SGILPSDRSLACKQNYTSKIQTTEDLKNVGGRSLGFRGQALASIAEMSDAMYITTRVPEE 164

Query: 116 NTG 118
              
Sbjct: 165 QVA 167


>gi|302507238|ref|XP_003015580.1| hypothetical protein ARB_05891 [Arthroderma benhamiae CBS 112371]
 gi|291179148|gb|EFE34935.1| hypothetical protein ARB_05891 [Arthroderma benhamiae CBS 112371]
          Length = 180

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 5/123 (4%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L +  +  I +   +   S  +KEL++N+LDA ++ +   I+       Q+ DNG
Sbjct: 45  MSIVALEDPAVRAIGSTSALPDSSSVVKELLDNALDAGATSIFIEISLNTLDIIQVKDNG 104

Query: 61  FGMTSEEIPMAVQRHCTSKI--SDDFSNI--HTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            G+   +  +A +++ TSKI   +D  N+   + GFRG+AL SI  +S  + + +R P+ 
Sbjct: 105 SGILPSDRSLACKQNYTSKIQTKEDLKNVGGRSLGFRGQALASIAEMSDAMYITTRVPEE 164

Query: 116 NTG 118
              
Sbjct: 165 QVA 167


>gi|58266232|ref|XP_570272.1| mismatch repair-related protein [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226505|gb|AAW42965.1| mismatch repair-related protein, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 759

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 121/283 (42%), Gaps = 18/283 (6%)

Query: 1   MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITD 58
           M  I  L       + +  I+   +    EL++NSLDAE++++E  +    G    ++ D
Sbjct: 1   MPNILPLPRPTSTTLRSSIILPSLAQIFSELLQNSLDAEATKIECYVNLAKGNETLRVED 60

Query: 59  NGFGMTSEEIPMAVQRHCTSK-ISDD-FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           NG G++   +    +R  TSK I +     + ++GFRGEAL SI ++S L + +R     
Sbjct: 61  NGTGISKNGLAKIGKRFRTSKEIHEGGLGPVGSYGFRGEALASIASLSLLDITTRRASFP 120

Query: 117 TGAQIAISGEKIS----SVRPVAMNPGTIVEVRDLFFTIPARLNF--LKSEQVETNLITD 170
              +I    + +       R +A   GT V VR++F TIP R       S  +  + +  
Sbjct: 121 VYTKILRHSKTLFEGPNPDRHIAGGQGTTVVVREIFRTIPVRREELAATSSTLLMSQLKK 180

Query: 171 VIRRMAIAYPKVSF-----TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
           V+  +A+  P V +       +T    +  M+  +++    +    + G   + +  ++ 
Sbjct: 181 VVETLALGNPGVRWVLWEEKTTTTGGLKRIMSINASDSAL-DVFKTLYGGALVQSVQKIK 239

Query: 226 EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTI 268
             + +  + G+         +    +++IN   +    + + I
Sbjct: 240 VTAGKRKVDGFIS--ISGDVSKAHQHLYINNYPIDRGDVHTAI 280



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 52/210 (24%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST-------KITSQTLLTPEIIDLLEGECALIMEHDE 478
           L ++DQHAA ER+  EK+  +                      I+   E +         
Sbjct: 512 LALIDQHAADERVAVEKVLLELCEGFAKDDLLVAELAKTRPMIILTQAEAQILSQPWVLS 571

Query: 479 DLHRLGIKAE-----RFGPN-AIAIREIPAIL-------SKKNIPQLLRDIIDEIIDSST 525
              R GI+         G    + +  +P  L           + +L+R  +  + + ++
Sbjct: 572 LFKRWGIRLTMPPGLSHGEYIQVKVETVPLSLLSRLGRKEGSEMTRLVRGYLPIVAEHAS 631

Query: 526 TYTL--------------------------------QDRIENILATMACYGSIRSGRKMQ 553
             T+                                   +  +  + AC G+I    ++ 
Sbjct: 632 EITVLVENLEGKAMEDNEGGDTEGYGGDWGRLMRFMPREMLELANSKACRGAIMFEDRLS 691

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + +RL++++ +      C HGRP+ + L
Sbjct: 692 HDQCDRLIQQLSQTRFPFMCAHGRPSMVPL 721


>gi|148687082|gb|EDL19029.1| postmeiotic segregation increased 2 (S. cerevisiae), isoform CRA_a
           [Mus musculus]
          Length = 676

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 9/190 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 481 EISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 537

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 538 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQD 596

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 597 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWN 656

Query: 573 CNHGRPTFIK 582
           C HGRPT   
Sbjct: 657 CPHGRPTMRH 666



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 23/219 (10%)

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE--------------- 226
           VS T    +  R  +   S +    E I  V G+  + + +   +               
Sbjct: 17  VSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQLQSLIPFVQLPPSDAVCEEYGLST 76

Query: 227 ---KSNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
                N   + G+    T   G +  ++ + FIN R      +   +   Y       +Y
Sbjct: 77  SRTPQNLFYVSGFISQCTHGAGRSATDRQFFFINQRPCDPAKVSKLVNEVYHMY-NRHQY 135

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTSSVLSK 339
           P VVL + +D   VD+NV P K  I  +   ++   +  S+    +     ++ +     
Sbjct: 136 PFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDSDANKLNVNQQPLL 195

Query: 340 KMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
            +  +  + +  +   P       +   K    E R+++
Sbjct: 196 DVEGNLVKLHTAELEKPVPGKQDNSPSLKSTADEKRVAS 234


>gi|114612037|ref|XP_001141578.1| PREDICTED: PMS2 postmeiotic segregation increased 2 isoform 1 [Pan
           troglodytes]
          Length = 759

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    ++  A+      +   V  +         +++               + P+  + 
Sbjct: 409 GSHCSSKCVASTPGDRGSQEHVDSQEKAPETDDCFSDVDCHSNQEDTGCKFRVLPQPTNL 468

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 469 ATPNTKRFKKEEILSSSD-ICQKLVNTQDVSASQVDVAV------KINKKVVPLDFSMSS 521

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 522 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 580

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 581 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 637

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 638 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 696

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 697 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 750



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 88/251 (35%), Gaps = 25/251 (9%)

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLK 159
           + S +T+ +       G ++      KI    P     GT V V+ LF T+P R   F +
Sbjct: 13  SHSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQR 72

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDF 217
           + + E   +  V+    I    +  + +       +     T G+    E I  V G+  
Sbjct: 73  NIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQ 132

Query: 218 INNAVELNEK------------------SNEITLQGYTGIPT--FNRGNANQFYVFINGR 257
           + + +   +                    N   + G+         R + ++ + FIN R
Sbjct: 133 LQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCARGVGRSSTDRQFFFINRR 192

Query: 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                 +   +   Y       +YP VVL + +D   VD+NV P K  I  +   ++   
Sbjct: 193 PCDPAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAV 251

Query: 318 IIQSIQKAINK 328
           +  S+    + 
Sbjct: 252 LKTSLIGMFDS 262


>gi|114612039|ref|XP_518964.2| PREDICTED: PMS2 postmeiotic segregation increased 2 isoform 3 [Pan
           troglodytes]
          Length = 727

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    ++  A+      +   V  +         +++               + P+  + 
Sbjct: 377 GSHCSSKCVASTPGDRGSQEHVDSQEKAPETDDCFSDVDCHSNQEDTGCKFRVLPQPTNL 436

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 437 ATPNTKRFKKEEILSSSD-ICQKLVNTQDVSASQVDVAV------KINKKVVPLDFSMSS 489

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 490 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 548

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 549 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 605

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 606 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 664

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 665 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 718



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 80/231 (34%), Gaps = 24/231 (10%)

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAY 179
           +     KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I  
Sbjct: 1   MFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIIS 60

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK---------- 227
             +  + +       +     T G+    E I  V G+  + + +   +           
Sbjct: 61  AGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEY 120

Query: 228 --------SNEITLQGYTGIPT--FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                    N   + G+         R + ++ + FIN R      +   +   Y     
Sbjct: 121 GLSCSDALHNLFYISGFISQCARGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY-N 179

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
             +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 180 RHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 230


>gi|157787060|ref|NP_001099378.1| mismatch repair endonuclease PMS2 [Rattus norvegicus]
 gi|149034928|gb|EDL89648.1| postmeiotic segregation increased 2 (S. cerevisiae) (predicted),
           isoform CRA_a [Rattus norvegicus]
 gi|149034929|gb|EDL89649.1| postmeiotic segregation increased 2 (S. cerevisiae) (predicted),
           isoform CRA_a [Rattus norvegicus]
          Length = 542

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 9/191 (4%)

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           E   + +       Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L
Sbjct: 347 EIRKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRL 403

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQL 512
           +TP+ ++L     A+++E+ E   + G              A  I  +P   +    PQ 
Sbjct: 404 ITPQTLNLTAVNEAVLIENLEIFRKNGFDFIIDEDAPVTERAKLI-SLPTSKNWTFGPQD 462

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + ++I  + DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   
Sbjct: 463 IDELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSASEMKKLISHMGEMDHPWN 522

Query: 573 CNHGRPTFIKL 583
           C HGRPT   +
Sbjct: 523 CPHGRPTMRHI 533


>gi|58737041|dbj|BAD89429.1| postmeiotic segregation increased 2 nirs variant 5 [Homo sapiens]
          Length = 756

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 133/354 (37%), Gaps = 20/354 (5%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD- 296
           G    +   A+      +   V  +        ++++               + P+  + 
Sbjct: 406 GSHCSSEYAASSPGDRGSQEHVDSQEKAPETDDSFSDVDCHSNQEDTGCKFRVLPQPTNL 465

Query: 297 --VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
              N    K      +   I   ++ +   + ++  ++       K+       +   + 
Sbjct: 466 ATPNTKRFKKEEILSSSD-ICQKLVNTQDMSASQVDVAV------KINKKVVPLDFSMSS 518

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
           L K    L +  ++   ++N       +   +   +E ++  +E   T +       Q +
Sbjct: 519 LAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAAE-DELRKEISKTMFAEMEIIGQFN 577

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L     A+++
Sbjct: 578 LGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLTAVNEAVLI 634

Query: 475 EHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
           E+ E   + G              A  I  +P   +    PQ + ++I  + DS      
Sbjct: 635 ENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLSDSPGVMCR 693

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT   +
Sbjct: 694 PSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMRHI 747



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 25/248 (10%)

Query: 105 HLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQ 162
            +T+ +       G ++      KI    P     GT V V+ LF T+P R   F ++ +
Sbjct: 13  DVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIK 72

Query: 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINN 220
            E   +  V+    I    +  + +       +     T G+    E I  V G+  + +
Sbjct: 73  KEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQS 132

Query: 221 AVELNEK------------------SNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQ 260
            +   +                    N   + G+    T   G +  ++ + FIN R   
Sbjct: 133 LIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCD 192

Query: 261 DKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQ 320
              +   +   Y       +YP VVL + +D   VD+NV P K  I  +   ++   +  
Sbjct: 193 PAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKT 251

Query: 321 SIQKAINK 328
           S+    + 
Sbjct: 252 SLIGMFDS 259


>gi|254577527|ref|XP_002494750.1| ZYRO0A08800p [Zygosaccharomyces rouxii]
 gi|238937639|emb|CAR25817.1| ZYRO0A08800p [Zygosaccharomyces rouxii]
          Length = 616

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 146/362 (40%), Gaps = 34/362 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITD 58
           M I+ ++     +I +  +I  P  A+KELI+N++D+ +  +   I     G  + ++ D
Sbjct: 1   MAIKPINFDASGKIGSSPLILSPISAVKELIDNAIDSGAKNIYIDIDEQTSGSEYIRVRD 60

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH----LTLMSRP 112
           +G G+      +    H TSKIS+  + + + T GFRG+AL S+ ++      + ++++ 
Sbjct: 61  DGSGIDGAGRQLMCLNHTTSKISNPQEIAQVSTLGFRGQALFSLASLCKAEGSMEVITKC 120

Query: 113 PQNNTGAQIAIS---GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLI 168
            ++  G +  ++     K S +  +    GT + +R LF  + AR          +    
Sbjct: 121 RKDAVGEKWFVNGDGSIKNSKITRIPYLQGTTLVLRRLFRGLRARHLKTSAKPFKQIGNC 180

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE-------------RISQVIGE 215
             +I   ++ Y  + F F  I  ++  +  +       +             R+    G 
Sbjct: 181 KTLIDHYSLDYRSIRFHFYLISLDKNGLVVKRELQQSHDTKFTKIKILSSIARLRNTHGH 240

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF-----YVFINGRTVQDKFILSTIRT 270
            F      L ++S +I +     +P     + +       ++  NGR +  +        
Sbjct: 241 TFFEELGILIDRSTKIDVILPRMLPHGGEEDLDNIKKPKKFLSFNGRPLSLELSFGKSIN 300

Query: 271 AYAETIPLGRY---PVVV-LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
              +++        P+V  L L       DVNV P K+ +  ++   + N + +++   I
Sbjct: 301 ELIDSLYHQLQLFDPMVWYLNLRSVMNIGDVNVEPEKNDVLIKDVDRLLNNMRRALLGHI 360

Query: 327 NK 328
            +
Sbjct: 361 MQ 362


>gi|240268598|gb|ACS52173.1| Mlh1 [Giardia intestinalis]
          Length = 328

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 15/202 (7%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS- 81
           P    KEL+EN+ DA++  +   ++        + D G G+   +  +   R  TSKI  
Sbjct: 1   PFNVAKELVENATDADAPTIRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIET 60

Query: 82  -DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------GEKI 128
             D  +I +FGFRGEAL SI  VS + ++S+         + I                 
Sbjct: 61  FSDIYSIQSFGFRGEALSSISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTSEHTD 120

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
             +  +  +  TI+ V DLF+  P R N ++S +   +L  +++  ++ A P   ++ S 
Sbjct: 121 FFISTLKADSFTIICVTDLFYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISF 179

Query: 189 IKSNRYKMNFQSTNGNFPERIS 210
           I + +       +  N  + IS
Sbjct: 180 IDNPQAIQREIQSWLNDTQHIS 201


>gi|328708648|ref|XP_003243755.1| PREDICTED: mismatch repair endonuclease PMS2-like [Acyrthosiphon
           pisum]
          Length = 591

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 105/266 (39%), Gaps = 7/266 (2%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
                +K   + S  +         +    +T++ +    L+N + +   ++   +    
Sbjct: 318 TYCDFSKINTNASIEIDTSTAPKERKFALVETNIEQIKQRLSNLRFRRSEKQKIKTRFYA 377

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
                     + +   E     +       Q +  +II++    L IVDQHA  E+  FE
Sbjct: 378 TIDPIKNQQAEVELSREISKDMFSRMSIIGQFNLGFIITKLDADLFIVDQHATDEKYNFE 437

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----ERFGPNAIAI 497
            ++   N+TKITSQ L+ P+ ++L      ++ME+       G       +      + +
Sbjct: 438 TLQ---NTTKITSQKLVVPQQLELTAVNEIVLMENINVFQMNGFDFQFQQDAEPTKKVKL 494

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
             IP   +     + + +++  + D+  T     R+ ++ A+ AC  S+  G+ +   +M
Sbjct: 495 TMIPMSNNWSFGKEDVDELLFMLQDAPNTLCRPSRVRSMFASRACRKSVMIGKVLNFGDM 554

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
            +L+  M        C HGRPT   L
Sbjct: 555 RKLIDHMGDIEQPWNCPHGRPTMRHL 580



 Score = 39.7 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%)

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
                         + R + ++  +              +YP V L + I   +VD+NV 
Sbjct: 24  WTCYVQRKGKKNQSSYRMMSNRKQVIKTVNEVYHQYNQNQYPFVYLNITIARAEVDINVT 83

Query: 301 PAKSYIRFRNPTIIRNFIIQS 321
           P K  I   N   + + I  S
Sbjct: 84  PDKRQIFLSNENYLVSIIKAS 104


>gi|50548159|ref|XP_501549.1| YALI0C07260p [Yarrowia lipolytica]
 gi|49647416|emb|CAG81852.1| YALI0C07260p [Yarrowia lipolytica]
          Length = 524

 Score =  147 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 90/589 (15%), Positives = 208/589 (35%), Gaps = 77/589 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGF 61
           IR++ ++  + I AG +  R +  I  L+ NS+   +  V   +    G +   + DNG 
Sbjct: 2   IRRIPDESRDII-AGSMYNR-AEFICGLLNNSITRGARHVTISVLPQLGFT---VQDNGK 56

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
            MT         RH  +                 AL  +G+V+ +T+ S    ++    +
Sbjct: 57  SMTD-------MRHTPA-----------------ALDLLGSVAVVTVES----HDQHLTL 88

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
                 I      + + GT++    LF+ IP +  +   +Q + + +   +    + +P 
Sbjct: 89  QGHVRSIKIRDGPSSSEGTLITCSSLFYNIPVKRKYAL-QQRDYDQVIFGVWVELLRFPS 147

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
           V    + + SN+ K+    ++      +  +         VEL    +    +   G+P 
Sbjct: 148 VH--VTLVSSNQVKLELVPSDSIVDRCMDMLEYYKCFGRRVELGRSQD---QELLFGLPE 202

Query: 242 FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
                A      +  R    K +   +      ++      +      +           
Sbjct: 203 MAITGA------VGARGNGVKTVQILLYNGSPTSLKRVEKCLDRFNYVLLVDSYAQ---- 252

Query: 302 AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
                           + Q +      +   +S+    K   S    + P+  +   +  
Sbjct: 253 --------------EGLSQELVVLELVEEWLSSNERGHKRSKSVESVSRPRKAVRMRSEG 298

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
                  + + +N + +         T   ++     +  T +      +Q+ + +++  
Sbjct: 299 GDVADSVVNMDQNTIVSFSGGFECAGTSRGESSTTTNTTLTRFSEFKTISQLEKRFVLIL 358

Query: 422 TT---DGLVIVDQHAAHERLIFEKMRQD-FNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
                  L+ VDQHAA ER++ +K+  D     +           + L      L+  H 
Sbjct: 359 AQLKSPTLICVDQHAADERILTDKITSDLIRDAENDVSQTAEIVPLHLSLNMKHLLK-HQ 417

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL---LRDIIDEIIDSSTTYTLQDRIE 534
             L++ G + E  G     +  +P +  + +  QL   +++ ++ + +  +   +   ++
Sbjct: 418 TVLNKWGFRFE--GG---YLNHVPHLAREMDPYQLDMGIKEYLETLENGGSDRAVPALLQ 472

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            ++A+ AC  +I+ G ++   E + ++  + K     QC HGRP+ + L
Sbjct: 473 QLVASFACRNAIKFGDELTLEECHTMVENLLKTKLPFQCAHGRPSMVPL 521


>gi|299748044|ref|XP_002911247.1| hypothetical protein CC1G_14676 [Coprinopsis cinerea okayama7#130]
 gi|298407793|gb|EFI27753.1| hypothetical protein CC1G_14676 [Coprinopsis cinerea okayama7#130]
          Length = 296

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 22/273 (8%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           LS     ++ + +I+      + EL++NSLDA +  +E  +    + F  + D+G G+  
Sbjct: 24  LSVPTQAKLRSTQILTSLPQIVSELLQNSLDAGAKSIEIGL-NAQEWFCWVKDDGCGINR 82

Query: 66  EEIPMAVQ-----RHCTSK--ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           E +    Q     R+ TSK       +   TFGFRGEAL S   +  L ++SR   +   
Sbjct: 83  EGLAAIAQEGDAGRYSTSKSYAPSAMNAQSTFGFRGEALASAAELCCLEIVSRTAVSREC 142

Query: 119 AQIAISGEKISSVRPVAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
           + + + G K     P       +PGT+V +RD F+ +P R     S     +L+   I  
Sbjct: 143 SSVILKGGKRLYEGPAVRWRREHPGTVVCIRDAFYNLPVRRLSHPSPSRTWDLVRQEIET 202

Query: 175 MAIAYPKVSFT---------FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
            A+  P V+F+          +  KS R          +  +   ++ G   + +  E++
Sbjct: 203 YAVVSPDVTFSLEDIREDSNVTKTKSVRIARLIVCQTSSMLQSFRRIYGHALVEHVEEID 262

Query: 226 EKSNEITLQGYTGIP-TFNRGNANQFYVFINGR 257
             S+ + ++G+  +  T+++ + +  Y     R
Sbjct: 263 ACSDALKIRGFISLCGTYSKISTDIQYGQATYR 295


>gi|328772216|gb|EGF82255.1| hypothetical protein BATDEDRAFT_87074 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 101

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 2/100 (2%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M ++ LS +   ++++ +++  P   +KELIEN++DA SS V+  +   G +   + DNG
Sbjct: 1   MTLQVLSSETAKRLSSAQVVISPESVLKELIENAVDAGSSSVQIRVKDAGMTLISVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALP 98
            G+   +I +A+QRH T+KI+  DD   + TFGFRGE + 
Sbjct: 61  CGIPVSDILLALQRHTTNKITCFDDVLTVQTFGFRGEGIS 100


>gi|269316183|ref|XP_638891.4| MutL DNA mismatch repair protein [Dictyostelium discoideum AX4]
 gi|256012918|gb|EAL65556.2| MutL DNA mismatch repair protein [Dictyostelium discoideum AX4]
          Length = 1658

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 175/459 (38%), Gaps = 67/459 (14%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L E++  ++ +  +I     AI+E+I NS+DA ++ +   I     SF ++ DNGFG++ 
Sbjct: 28  LKEEVSLKVRSSVVIVSLEQAIEEIIFNSIDARATVISISINLSNLSF-EVKDNGFGLSY 86

Query: 66  EEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN-------- 115
           E +     R+CTSKI+   D  ++ TFG+RGE+L S+  +S L ++S    +        
Sbjct: 87  ENLKFVGDRNCTSKINSLSDLKSLKTFGYRGESLASLSNISSLDIISNSFGSTIQKSISF 146

Query: 116 ----------------NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK 159
                                  ++   I++    ++  GTIV++RDLF   P R   L 
Sbjct: 147 GKVDQFKILDNNNSSSCDNNNNNVNNNNINNNNNNSIANGTIVKIRDLFKNYPVRRQGLY 206

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN 219
              ++   I   I  +A+++PK+ F+    ++    +     + +F        G++ +N
Sbjct: 207 HPNLKLI-IKKRIEIIALSFPKIVFSVY-DETKSLTILKTPKDTSFLSYFKHFYGQEMMN 264

Query: 220 NAVE---------LNEKSNEITLQGYTGIPT-FNRGNANQFYVFINGRTVQDKFILSTIR 269
                         N  S+   L GY   P      N +  Y+++N R V +  +   + 
Sbjct: 265 KLEYVTSENYNNTTNNNSSSYYLSGYLSSPHKKGHPNKSFQYIYLNNRIVLNTKLHRHVN 324

Query: 270 TAYAETIPL-------------------GRYPVVVLLLEIDPRQVDVNVHP-AKSYIRFR 309
             Y +                          P+ +L L     + + +  P +K+++ F 
Sbjct: 325 QLYQKYRLFNATRKANANVSKIAKKEVIDSNPIFILFLRCSQLEYERSYEPSSKTFLEFN 384

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKL 369
           +       I   + K + K           K I++        T LP    +  + +   
Sbjct: 385 DWKKPLAEIQNVLTKFLTKHRSDDGGNSRGKSITT--------TALPSSQPNNYDGKSTS 436

Query: 370 FLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI 408
                  +  D+   +D   S      +E +   + +G 
Sbjct: 437 TSTTTTTTAGDISIFEDDDLSNVVQDTQEDDGDGFDMGY 475



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 3/193 (1%)

Query: 393  NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM-RQDFNSTK 451
                E       Q      Q    ++I +    ++I+DQHA  ER+  E + R+ F   K
Sbjct: 1453 QKCTEVIPKEMLQNFKFITQWDNKFLICEADGIVLILDQHAVSERIKLEILERKYFGENK 1512

Query: 452  ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ 511
                 +       L E E  L+  + + L + G K   F   +I I ++P          
Sbjct: 1513 FDLCPMPERTRWSLTEYELELMRIYTKPLEQWGFKWT-FNKTSINISQVPMFCLVGLGVN 1571

Query: 512  LLRDIIDEI-IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
             LR+ + ++      T         ILA+ AC  +I+ G K+      +LL ++ +    
Sbjct: 1572 DLREFLYQLESSKGATSNRPPAAHRILASKACRTAIKFGNKLSREICIKLLEDLNECNIP 1631

Query: 571  SQCNHGRPTFIKL 583
             QC HGRP+ I L
Sbjct: 1632 FQCAHGRPSIIPL 1644


>gi|141797000|gb|AAI39775.1| Pms2 protein [Mus musculus]
          Length = 191

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +I+++  + L +VDQHAA E+  FE ++Q    T + +Q L+TP+ ++L 
Sbjct: 5   MEILGQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQH---TVLQAQRLITPQTLNLT 61

Query: 467 EGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
               A+++E+ E   + G              A  I  +P   +    PQ + ++I  + 
Sbjct: 62  AVNEAVLIENLEIFRKNGFDFVIDEDAPVTERAKLI-SLPTSKNWTFGPQDIDELIFMLS 120

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           DS        R+  + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT  
Sbjct: 121 DSPGVMCRPSRVRQMFASRACRKSVMIGTALNASEMKKLITHMGEMDHPWNCPHGRPTMR 180

Query: 582 K 582
            
Sbjct: 181 H 181


>gi|332864637|ref|XP_003318343.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 1 [Pan
           troglodytes]
 gi|332864639|ref|XP_003318344.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 2 [Pan
           troglodytes]
          Length = 191

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L 
Sbjct: 5   MEIIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLT 61

Query: 467 EGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
               A+++E+ E   + G              A  I  +P   +    PQ + ++I  + 
Sbjct: 62  AVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKNWTFGPQDVDELIFMLS 120

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           DS        R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT  
Sbjct: 121 DSPGVMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMR 180

Query: 582 KL 583
            +
Sbjct: 181 HI 182


>gi|37051337|dbj|BAC81643.1| PMS2-C terminal -like [Homo sapiens]
          Length = 191

 Score =  143 bits (360), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +II++  + + IVDQHA  E+  FE ++Q    T +  Q L+ P+ ++L 
Sbjct: 5   MEIIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQH---TVLQGQRLIAPQTLNLT 61

Query: 467 EGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEII 521
               A+++E+ E   + G              A  I  +P   S    PQ + ++I  + 
Sbjct: 62  AVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLI-SLPTSKSWTFGPQDVDELIFMLS 120

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           DS        R++ + A+ AC  S+  G  + + EM +L+  M +  +   C HGRPT  
Sbjct: 121 DSPGVMCRPSRVKQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPWNCPHGRPTMR 180

Query: 582 KL 583
            +
Sbjct: 181 HI 182


>gi|320163753|gb|EFW40652.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1219

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/508 (17%), Positives = 166/508 (32%), Gaps = 129/508 (25%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           + +G  I   +  ++EL+ NS+DA ++ V+  +        ++ DNG G+   ++    +
Sbjct: 2   LRSGVSIPSLAACVEELVLNSIDAGATAVDVHVDL-QLCRLRVLDNGAGIALRDLARVGE 60

Query: 74  RHCTSK---------------ISDDFSNIHTF---GFRGEALPSIGAVSHL-TLMSRPPQ 114
           RH TSK               I DD   + T    GFRGEAL S+  +S L  +++R   
Sbjct: 61  RHATSKFAAGSVSSAAGGVVAIEDDADLMQTLSYYGFRGEALASVADMSTLVEIVTRVDN 120

Query: 115 NNTG---------------------AQIAISGEKISSVRPV------AMNPGTIVEVRDL 147
           +N G                      Q +   EK      V       +  GTIV V  L
Sbjct: 121 DNAGQSSETYFKLLRPTPSENRNPATQRSSEHEKPLPQYHVGVSAVKRVTAGTIVTVHGL 180

Query: 148 FFTIPARLNFL-KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           F T+P R   +  +  +        +  +A+A P V+ +     + R  +  +       
Sbjct: 181 FATMPVRQGVMLANPVLTLEHARRAVEAIALANPGVALSVHDDHNARRVLTTRRLTSALS 240

Query: 207 --------------ERISQVIGEDFIN-------------------------NAVELNEK 227
                         E +   +  +F N                         + +  +  
Sbjct: 241 VFKLLFGVERVGVTENVDMSLSCEFSNLTTRSALNQPQAAVSETLAAAAPESSILVRSVT 300

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET------------ 275
             + +L+G+        G  +  + FIN R V        +     +             
Sbjct: 301 VVDYSLRGFLCTEP-QPGAKSMQFFFINRRRVLHTRFHKLVNQLMRQWQGTRGPRFVSQT 359

Query: 276 IPLGR--------------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
           +P+GR                  VL +   P   D+   PAK+ + F +       + Q+
Sbjct: 360 LPVGRDMHASNNSRSFDKASCAWVLNMTCPPGLYDITFDPAKTLVEFADWETPLALVEQA 419

Query: 322 IQKAINKK--------GISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
           I+ A+            +  +++      +SF       + + + A +  +    + + E
Sbjct: 420 IRTALQFHPSTVAVATDLLAATLSEPPTFASFQPGGLVSSEVVRRARARESANSAVEVDE 479

Query: 374 -------NRLSTNDLLPSDDPTYSEDND 394
                   RL+T D    +  + S    
Sbjct: 480 CDAVPKRPRLATEDSAADESQSRSRYFQ 507



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 122/386 (31%), Gaps = 96/386 (24%)

Query: 292  PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF------ 345
            P  ++ + +P  +  + +    +   I   ++   N +  +          SS       
Sbjct: 782  PDVLEPDANP--TSPKQQESDEVMFTISSKLRSHNNLERPADDPTAHDDEFSSAEADDAL 839

Query: 346  ---------HQDNAPKTHLPKYATSLTNTQEKLFLQEN------RLSTNDLLPSDDPTYS 390
                     +   +  +  P + + +   Q  +F          R ++N+ L +     S
Sbjct: 840  LAATALPNSNPVPSVASSGPSFRSLMARWQNPVFPSRQARPMDARAASNEALRTQRKDAS 899

Query: 391  EDNDPVEESEATHYQLGIACAQI---------HQNYIISQTTDGLVIVDQHAAHERLIFE 441
                  +E       L     Q            + +     D +  VDQHAAHER+  E
Sbjct: 900  RSMHFRKELFGQLSVLSQVERQFVVVLAPGDDQPSALSDDGNDLIFCVDQHAAHERIRLE 959

Query: 442  KM---------RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----- 487
            +          +   +S  + S+TL  P  + +   E  L+    ++L   GI+      
Sbjct: 960  RFTREVYQSNDQGTGSSQVLKSETLKDPLRLAMTVAEARLLEPFRDNLEACGIRFRIGSN 1019

Query: 488  ----ERFGPNAIAIREIPAIL----------------------------SKKNIPQ---- 511
                E     A+ I  +P I+                               ++ Q    
Sbjct: 1020 VNALEDNAECAVMIDAVPPIMLEASRAEYISGQHVSRFQLEKQARALVGGADDVAQTVSS 1079

Query: 512  -----LLRDIIDEIIDS---------STTYTLQDRIENILATMACYGSIRSGRKMQSIEM 557
                 +L  +I  ++ S            Y L   I + LA+ AC+G+I+ G  +   + 
Sbjct: 1080 LTQAAILHGLISTLVRSRIDQQCHTGGGAYDLPLTISSALASKACHGAIKFGDTLSIDQC 1139

Query: 558  NRLLREMEKNPNSSQCNHGRPTFIKL 583
              L+  +       QC HGRP+   L
Sbjct: 1140 KSLVNTLSDCTLPFQCAHGRPSIAPL 1165


>gi|209878770|ref|XP_002140826.1| DNA mismatch repair protein [Cryptosporidium muris RN66]
 gi|209556432|gb|EEA06477.1| DNA mismatch repair protein, putative [Cryptosporidium muris RN66]
          Length = 919

 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 139/384 (36%), Gaps = 75/384 (19%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
            KL +    ++++ ++I      IKELIENSLDAESS +   +   G S+ ++ DNG G+
Sbjct: 3   HKLKKDDQEKLSSQQVITELKDCIKELIENSLDAESSNIIINLGDNGSSYIEVIDNGSGI 62

Query: 64  TSEEIPMAVQRHCTSKIS--DDF-SNIHTFGFRGEALPS-IGAVSHLTLMSRPPQNNTGA 119
              ++     R  TSK+   +    +++T GFRGE L S I +   + + +   ++    
Sbjct: 63  --IDLDKIGGRGNTSKLENFESLNESLNTLGFRGEGLNSIINSCKSVVIETCIKEDKGIT 120

Query: 120 QIAI--------SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVETNLITD 170
           +           +   I++   +    GT V V   F+   AR     +  +++   +  
Sbjct: 121 RSIYFDKANISENRNTINNHSWIIGESGTKVLVTGFFYLYIARRKLFLQQNKLQLKNLIT 180

Query: 171 VIRRMAIAYPKVSFTFST--------------IKSNRYKMNFQSTNGNFPERISQVIGED 216
           +I   AI YPKV F  +                  N  K    +   N     + +I   
Sbjct: 181 LIEEYAICYPKVRFLLTNTMLTNEQRTKMGLVNDYNYSKYIEGNLANNKNNSTATLIMTS 240

Query: 217 FINNAVELNEKSN-----------EITLQGYTGIPTF----------------------- 242
             +   EL                EI + G   IP +                       
Sbjct: 241 GSHTTTELKVAKYLWGDSLLEDAIEIDIHGELSIPKYRYNKNVDNYNNSPDIIGGNWSIT 300

Query: 243 --------NRGNANQFYVFINGRTV----QDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
                    R +++     +N R V         +++I    +  I    YPV VL + +
Sbjct: 301 GFISSIDKGRPSSDYQIYIVNNRPVSTLRTFSRAITSIHRTLSSYINKKWYPVFVLKISL 360

Query: 291 DPRQVDVNVHPAKSYIRFRNPTII 314
               +D+NV P K  I   N   I
Sbjct: 361 PSCLLDINVTPDKRIILLPNNVEI 384



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLS 586
               R+ +ILA+ AC  ++  G  +   +M++++  M    +   C HGRP+   L  L+
Sbjct: 858 PRPQRLWSILASKACRRAVMVGDDLNLTQMSKIIYNMSTLKSPWNCPHGRPSIRHLGNLT 917

Query: 587 DI 588
           DI
Sbjct: 918 DI 919



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 18/230 (7%)

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
           I   +       I +      N    +  ++  K  +   H +   +        S +  
Sbjct: 563 IYLNDEKSADENITKHTSYTPNINLKNCINISEKNFL-DEHNNECVELSPEVIDYSESQI 621

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD- 424
           Q   ++  N+    +   S + + ++  +   + +   +       Q ++ +I++     
Sbjct: 622 QNMNYITNNKTHKGN---SCNKSINKTLNKCFQFQKHLFNDLKIVGQFNKGFILATLFQP 678

Query: 425 -----GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
                 L I+DQHAA E+  FEK   D     I +Q LL+P  + L   +    + + + 
Sbjct: 679 EVSSFHLFIIDQHAADEKTKFEKYNNDL--RNIQTQKLLSPLPMTLTPAQEQTALTYKDI 736

Query: 480 LHRLGIKAERFGPNA-----IAIREIPAILSKKNIPQLLRDIIDEIIDSS 524
               G K   F  N+     I + +IP I+          D++ +I    
Sbjct: 737 FESNGFKY-VFNTNSTIGKRIQLTQIPIIMGSPLQQFDFLDLLTQITKYK 785


>gi|313212747|emb|CBY36677.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%)

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
            S+   +EK           +     +     +++   +     +       Q ++ +II
Sbjct: 432 ESIKAAKEKEERSNTIFQGREFYAKFNDQKKAEDELTRKFSKKDFTKLQVIGQFNRGFII 491

Query: 420 S---QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEH 476
               Q  D L ++DQHA  E+  FE++     S KI SQ L+  + + L  GE  ++ + 
Sbjct: 492 VTVGQLKDDLFLIDQHACDEKFNFERLM----SKKIDSQPLVIGKRMTLNPGEDQILQDK 547

Query: 477 DEDLHRLGIKAERFGPN-AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
                + G       P  +  +  +P +       + + +++  +I+         +I  
Sbjct: 548 VALFKKYGFDFNFSDPEFSYRMTAVPRVGKSTLGEEDVHEMLF-LINEGDFNPKPSKIRR 606

Query: 536 ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           I A  AC  S+  G  +++ +M R+L+ M        C HGRPT   L
Sbjct: 607 INAMAACRSSVMIGEALKTYQMERMLKNMSTMDQPWNCPHGRPTMRHL 654



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 98/290 (33%), Gaps = 34/290 (11%)

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +     + GT + V +LF  IP R    K + + E       +   A+         +  
Sbjct: 1   MIKAQSSNGTTIRVENLFHRIPVRRTVFKQNAKREAQRALATMMSYALIANARIVVTTKN 60

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE-------------------------- 223
             +           +   +I+ V+G       VE                          
Sbjct: 61  GRSMKTEIQTRAGDSLKGKIASVLGGQISKGLVEIDDIFDAGATEVESFWNLSVPTEEVI 120

Query: 224 --LNEKSNEITLQGYTGIPTFN-RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
               +K+      G+        R + ++ + F+NGR +   F+   I   + +     +
Sbjct: 121 EDHLQKARIFKFNGFISKTDSGGRTSPDRQFFFVNGRPIDAPFLSRIINQEWRKVTS-KK 179

Query: 281 YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP---TIIRNFIIQSIQKAINKKGISTSSVL 337
           YPVVVL +E+D   VD+N+ P K  +  +N          ++Q+I  A  +  +S + + 
Sbjct: 180 YPVVVLNIEVDQSAVDINLAPDKRTVLLQNQKHCQFRFRILLQNIWGATERDVVSMTQLS 239

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             +   + +  ++ +         L N      ++E+       LP  D 
Sbjct: 240 MDQFSMTLNTQSSVENSTESSVNGLINDVTFSEVEEDSNERPSKLPRLDF 289


>gi|296812399|ref|XP_002846537.1| DNA mismatch repair protein pms1 [Arthroderma otae CBS 113480]
 gi|238841793|gb|EEQ31455.1| DNA mismatch repair protein pms1 [Arthroderma otae CBS 113480]
          Length = 1013

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 136/397 (34%), Gaps = 64/397 (16%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            I+ +  + ++QI +G++I      +                                  
Sbjct: 3   TIKPIEARSVHQIQSGQVIVDLCRPV------------------------WLMW------ 32

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
                       +H TSK+S   D + + TFGFRGEAL S+ AVS+L +++   +    A
Sbjct: 33  --------FIALKHYTSKLSTFADLTELQTFGFRGEALSSLCAVSNLKVITAEAEQAPRA 84

Query: 120 Q--IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
                    K+ S + VA   GT V V +LF ++P R     K+ + E   +  ++   A
Sbjct: 85  SKLDFEFSGKLKSTQVVAGQKGTTVSVENLFKSLPVRRRELEKNVKREYGKVLALLHAYA 144

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVE----------- 223
                V F           +   +T  N    E IS V G   +   +            
Sbjct: 145 CISTGVRFNVKNQMPKGKSVVVFTTKSNPTTRENISNVYGAKTLLALMPLDLDLEFEPSP 204

Query: 224 -----LNEKSNEITLQGYTGIPTF--NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
                 ++ SN+I + G+   P F   R   ++   F+N R      I       Y    
Sbjct: 205 AAKRFSSKASNKIFVHGHISKPVFGEGRQTPDRQMFFVNSRPCGLPQIAKAFNEVYKSF- 263

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSV 336
            L + P +    E+D    DVNV P K  I   +   +   +  S+ +   ++  +    
Sbjct: 264 NLSQSPFIFANFEMDTAAYDVNVSPDKRTIMLHDAGALIECLKASLTELFEQEDQTVPVS 323

Query: 337 LSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQE 373
                  S  +    KT  P    +  N +E   +  
Sbjct: 324 QLAFSKKSEIRPPRQKTPPPSTDATQDNPEEPTGIAP 360



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 48/208 (23%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
            S   D L I+DQHA+ E+  FE+++     T + +Q L+ P+ +DL   E  +I+E+  
Sbjct: 769 PSAEQDELFIIDQHASDEKYNFERLQ---AETTVQNQRLVQPKTLDLTAVEEEVIIENLA 825

Query: 479 DLHRLGIKAE-------RFGPNAIAIREIP----AILSKKNIPQLLRDIIDEIIDSSTTY 527
            L + G   E         G     I  +P     + + +++ +L+  ++ E    S  +
Sbjct: 826 ALEKNGFIVEIDTSGDEPIGRRCKLI-SLPLSKEVVFNTRDLEELIV-LLSEAPQQSQNH 883

Query: 528 --------------------------------TLQDRIENILATMACYGSIRSGRKMQSI 555
                                               ++  + A  AC  SI  G+ +   
Sbjct: 884 HGKRSMNEFNSDAEGADIEPPGISSPFSDHLVPRPSKVRKMFAMRACRSSIMIGKNLTHR 943

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +M  +++ M        C HGRPT   L
Sbjct: 944 QMESVVKHMGTIDKPWNCPHGRPTMRHL 971


>gi|169836746|ref|ZP_02869934.1| DNA mismatch repair protein mutL [candidate division TM7
           single-cell isolate TM7a]
          Length = 124

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 4/123 (3%)

Query: 472 LIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQD 531
              E+ +     G   + F  N I IR +PA   + +I  +    +  ++D      ++D
Sbjct: 4   YYFENIDLFQNFGFDIDEFAENEIVIRAVPAFDFRDSIENVF---LQLLLDLKNEVEIKD 60

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
             ENI+ +M+C G+I++G+K+   EM  ++R + +      C HGRP  +KL  +D++K+
Sbjct: 61  LRENIIISMSCKGAIKAGQKLDISEMQNMVRRIHEVGK-YTCPHGRPIIVKLSKNDLDKM 119

Query: 592 FGR 594
           FGR
Sbjct: 120 FGR 122


>gi|164660750|ref|XP_001731498.1| hypothetical protein MGL_1681 [Malassezia globosa CBS 7966]
 gi|159105398|gb|EDP44284.1| hypothetical protein MGL_1681 [Malassezia globosa CBS 7966]
          Length = 587

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 163/429 (37%), Gaps = 27/429 (6%)

Query: 88  HTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEVR 145
            TFGFRGEAL SI  VS  + ++S+   +    +       +S   R  A   GT +  +
Sbjct: 2   TTFGFRGEALASISYVSASVHVVSKRADDICAYRADFCAGTLSSEPRACAGTNGTSITAQ 61

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSFTFSTIKSNRYKMNFQS-TN 202
           DLFF    R   L+S   E N   DV+ + A+ Y    VSF+    +     +   +   
Sbjct: 62  DLFFNTSQRKRALRSASEEYNRSLDVVTKYALHYGPLGVSFSCKRAEHASMDLQTLADAR 121

Query: 203 GNFPERISQVIGEDFINNAVE---LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
              P+ I  + G     + +     ++       +G+     ++         FIN R V
Sbjct: 122 TTIPDMIRTIYGSHLARDLLHLSTFSDAKLGFKAEGWFSNANWSSRRITFI-CFINHRLV 180

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           +   +   + + YA+ +  G+YP + + LEI+P ++DVNVHP K  + F +   I   I 
Sbjct: 181 ECPSLKRALESVYAQVLLKGQYPWIYVALEIEPNRIDVNVHPTKQEVHFLDEEDIIELIT 240

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNA-----PKTHLPKYATSLTNTQEKLF---- 370
             +Q  +  +            +     +N       + H P++   + N+ ++L     
Sbjct: 241 ARVQDILADQSSCRVYSTRNVPLGQVVSENQVQVLRSRGHDPRHLVRVDNSDQRLDGMVQ 300

Query: 371 --LQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
                +R  ++D +  ++   +   +  +E  A+H+       Q H    I     GL +
Sbjct: 301 IPSTISRTPSSDKILQNECKLTSVRELRQECLASHHVRLTNILQNHSFVGIVDLQKGLSL 360

Query: 429 VDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE 488
           +  H     L+   +  +    ++  +   +   + L             +L  LG   E
Sbjct: 361 IQ-HNTQLYLVQHGLLIEDFGYQLALRQFGSLATVRLDPAPS------LSELIGLGYDRE 413

Query: 489 RFGPNAIAI 497
                  A+
Sbjct: 414 PADQQKAAL 422


>gi|258578039|ref|XP_002543201.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237903467|gb|EEP77868.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 681

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 119/352 (33%), Gaps = 65/352 (18%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I  L E     I +   +  P   +KEL++N+LDA ++ V   ++       Q+ DNG
Sbjct: 1   MPIAALDEAAAKAIGSASALYDPCCVVKELVDNALDANATIVSIELSSNTLDTIQVKDNG 60

Query: 61  FGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+  E+  +  +R+ TSKI   +D  N+   + GFRG+AL S   +  + L S      
Sbjct: 61  LGIPLEDRDLVCKRNHTSKIRSLEDLKNVGGSSLGFRGQALASTAEM-QVMLKSSTQN-- 117

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                                                            + I   ++  A
Sbjct: 118 ------------------------------------------------ISRIRRTLQEYA 129

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEKSNEITLQ 234
           ++   V F+   +K  +      +   N    + IS++IG D +   +            
Sbjct: 130 LSRVHVRFSLKILKHQQDSAWVYAPKQNPSVTDAISKIIGVDVMAQCLSQTTDLVN---- 185

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR--YPVVVLLLEIDP 292
               IP     + +   +      +    I  +      E +P      P + L +    
Sbjct: 186 --NSIPNRENESHSGIRLHAILPKLDAVKIYKSYIKYTFERLPSSTVANPFLCLYIFCAE 243

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
              DVN+ P+K  + F N  ++   +    +    K      + +  +M +S
Sbjct: 244 GSYDVNIEPSKDDVLFENQALVSEAVEGLFEGIYGKLQSRGENQVHSQMGAS 295


>gi|322694251|gb|EFY86086.1| putative DNA mismatch repair protein PMS1 [Metarhizium acridum CQMa
           102]
          Length = 791

 Score =  137 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 424 DGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           D L I+DQHA+ E+  FE+++    +T I SQ L+ P+ + L   E  +++E+   L   
Sbjct: 595 DELFIIDQHASDEKFNFERLQ---ANTVIQSQRLVYPKSLQLTALEEEIVLENLPALEAN 651

Query: 484 GIKA--ERFGPNAI----AIREIPAILSKKNIPQLLRDIIDEIIDSSTTY---TLQDRIE 534
           G K   +  G + +     +  +P           L ++I  + + S+         R+ 
Sbjct: 652 GFKIQVDSTGGSPVGARCQLLALPLSREVTFTLNDLEELIALLAEESSGSRHIPRPSRVR 711

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            + A  AC  SI  G+ + + +M  LLR M +      C HGRPT   L
Sbjct: 712 KMFAMRACRSSIMIGKPLTANQMYLLLRHMGELDKPWNCPHGRPTMRHL 760



 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 73/208 (35%), Gaps = 5/208 (2%)

Query: 222 VELNEKSNEITLQGYTGIPT--FNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG 279
           +  + +S ++ + G+   P     R   ++   F+NGR         T    Y     + 
Sbjct: 26  LRTDRESKQVRVLGHVSRPVQGDGRQAPDRQMFFVNGRPCGLPQFAKTFNEVYKAY-NIS 84

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKG--ISTSSVL 337
           + P +   +++D    DVNV P K  I   + +++ + +  S+ +  +     + T+ VL
Sbjct: 85  QSPFIFANVQLDTNMYDVNVSPDKRSILLHDQSLLLDRLRSSLVRLFDSHDYQLPTTQVL 144

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
           + +        +A +  +     +  +  E      +   ++   P +      ++  + 
Sbjct: 145 TTETPGCPASVDANRRSISLIRENSPHASESELSAASHSESDGESPFNTGFVKGNSSKMT 204

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDG 425
             E      G   A+I    +       
Sbjct: 205 RQEDKIASGGREGARIAPESLTKWFGCD 232


>gi|300122429|emb|CBK23000.2| unnamed protein product [Blastocystis hominis]
          Length = 185

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q + ++I+ Q    L I+DQHA  E+  +E +    N   I SQ L+ P  ++L 
Sbjct: 1   MEVIGQFNNSFILCQLDKDLYILDQHACDEKSNYEHLM---NEVAIHSQKLIKPIPLELS 57

Query: 467 EGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIPAILSKKNIPQLLRDIIDEIID 522
             +   I+ +     R G              + +  +PA        +   +++  +++
Sbjct: 58  PDQEFTIIHNQAIFKRNGFDISISESQELGQRLQLTSLPASKKYTFSVEDFLELVGTVME 117

Query: 523 SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEM-NRLLREMEKNPNSSQCNHGRPTFI 581
           +        ++  ILAT AC+ S+R+G  +   +M ++++R + +      C HGRPT  
Sbjct: 118 TGGMAQRTPKLAKILATRACHQSVRAGDPLNYPKMVSQIVRRLAELDRPWSCPHGRPTLR 177

Query: 582 KL 583
            L
Sbjct: 178 HL 179


>gi|309807408|ref|ZP_07701371.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|308169330|gb|EFO71385.1| DNA mismatch repair protein, C-terminal domain protein
           [Lactobacillus iners LactinV 01V1-a]
          Length = 388

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 46/385 (11%)

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
           AN   + +N R V++  ++  I   Y   +  GRYP  ++ +++DP  VDVNVHP K  +
Sbjct: 9   ANFITLLLNTRYVKNYRLVQAIVDGYGTRLLKGRYPFAIVKIDLDPLLVDVNVHPTKQEV 68

Query: 307 RFRNPTIIRNFIIQSIQKAIN--KKGISTSSVLSKKMISSFHQ----------DNAPKTH 354
           R    + +   I+++I +A+   +  I++    ++   +   Q          D +    
Sbjct: 69  RLSKESELARLIVRTIDQALGATEHEIASFDDATESKQTKLDQLEFNLNEAVVDTSRIPV 128

Query: 355 LPKYATSLTNTQEKL------------------------FLQENRLSTNDLLPSDDPTYS 390
                  LT+   K+                        +    +  T     S     S
Sbjct: 129 EFSIPNDLTDDSSKVKEDDTTFVSLKHPRQDEHYLVTTTWDANVQAQTALSPFSASSLSS 188

Query: 391 EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST 450
           E     E+             Q+H+ Y+++   + L IVDQ AA  RL F+K+     + 
Sbjct: 189 EVTTSSEQILVNKLPQLQCLGQMHE-YLLATADNDLYIVDQVAADNRLAFDKLLLQMQAE 247

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
               QTLL   I+D    +   + +   D  +LG+  E FG  +  ++E P  L   +  
Sbjct: 248 NNYEQTLLDNIILDFSMIDFLKVQDKLADFKKLGLNLEEFGGRSFVLQEYPLWLENCDQI 307

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIE---NILATMACYGSIRSGRKMQSIEMNRLLREMEKN 567
           Q ++ +ID I+        + RIE    I+AT   +  IR  + + S+EM  +L  +  +
Sbjct: 308 Q-IKAVIDLILAHINAPLDKIRIELAKKIVATK--H--IRR-KSLNSLEMVEMLTSLSNS 361

Query: 568 PNSSQCNHGRPTFIKLKLSDIEKLF 592
            N      G+    K+  +D+ KLF
Sbjct: 362 SNPYHDPFGKIIIAKISENDLRKLF 386


>gi|312087899|ref|XP_003145652.1| hypothetical protein LOAG_10077 [Loa loa]
 gi|307759184|gb|EFO18418.1| hypothetical protein LOAG_10077 [Loa loa]
          Length = 691

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 108/306 (35%), Gaps = 54/306 (17%)

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLT 107
           G    ++ D+G G+ S       + H TSK++   DF+ + TFGFRGEAL S+ A+S L+
Sbjct: 2   GFERVEVIDDGTGIHSLNFDALCKPHSTSKLTNFSDFNQLTTFGFRGEALSSLCAISSLS 61

Query: 108 LMSRPPQNNTGAQIAI-SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL-KSEQVET 165
           + +R        ++       I S    A   GT + +  LF T+P R     ++ +   
Sbjct: 62  ITTRHADEVMATKLQFGHDGSIKSREKCARPVGTTISINCLFETLPVRRKEFERTIKKAF 121

Query: 166 NLITDVIRRMAIAYPKVSF--TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDF------ 217
             + +V++  A++   V F             +     N +  + +  + G  F      
Sbjct: 122 TKLLNVVQSFALSRTNVRFVVNSLMDGKQHQALVTPGGNASIKDIVVNLFGARFEKGTVL 181

Query: 218 ------------INNAVELNEKSNEITLQGYTGIPTFNR--GNANQFYVFINGRTVQDKF 263
                           +  + K ++I + GY       +    A++ +V+ N R V    
Sbjct: 182 DIIQQEPDESICALYGISDHSKFDDIKITGYISSCVHGQGKSTADRQFVYFNKRPVDYAK 241

Query: 264 ILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQ 323
           +                              +DVNV P K  + F     +   +  S+ 
Sbjct: 242 V----------------------------ESIDVNVSPDKRSVFFEREKELFALLRASLL 273

Query: 324 KAINKK 329
                 
Sbjct: 274 ATFAPH 279



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 434 AHERLIFEKMRQDFNSTKITSQT---LLTPEIIDLLEGECALIMEHDEDLHRLGIKA--- 487
             ER++  +     ++ ++        ++P ++DL   + A++ ++ +  +  G +    
Sbjct: 526 DDERIMESRTEFRVDNPEVAESELAAYISPRVLDLGVVKEAILRDNVDIFNYNGFEFQFD 585

Query: 488 --ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             E  G  A+ +  IP + S +     + +++  + D         ++  + A+ AC  S
Sbjct: 586 DEEVVGKRAL-LTAIPVLQSWQFSISDIDEMLSVLCDFPGMMYRPAKLRKLFASRACRKS 644

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +  G  +    M +++R +    +   C HGRPT   L
Sbjct: 645 VMIGSSLTMAHMEKIVRHLGTLDHPWNCPHGRPTLRHL 682


>gi|298715813|emb|CBJ28278.1| MutL protein homolog 3 [Ectocarpus siliculosus]
          Length = 1581

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 124/363 (34%), Gaps = 48/363 (13%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKISD--DFSN 86
           + NS+DA ++ VE  +         + DNG G+ +E +    A +R  +SK +   +  +
Sbjct: 44  VSNSIDAGATSVEVKVDLPSY-RITVVDNGRGIPAETLRSLTATER-ASSKANSAVEMQH 101

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQ-NNTGAQIAISGEKISSVRPVAMNPGTIVEVR 145
             T+GFRGEAL S+   S L + SR          +              +  GTIV +R
Sbjct: 102 ASTYGFRGEALYSLALTSLLEIQSRCAGKEPHAKVVREGEVLHFGPSRAPVRAGTIVTLR 161

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
           D FF  P R     +E  E   I D + RMA+    V+ T      ++  +   +T    
Sbjct: 162 DAFFKWPVRRKAA-NEVTEMTRIKDCVSRMALVNNSVAITVRDSAKSKVVVRATATGSAT 220

Query: 206 PERIS---------------QVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                                V       + +        I   G +        +    
Sbjct: 221 RTFAQVFSSDKLSLARKVQIPVCVTSSAVHPLWRIHLPFCICSIGSSSGMVAFPFSTRYD 280

Query: 251 YVFINGRTVQDKFILSTIRTAYAETIPLGR-------------------------YPVVV 285
              +         +      A    +  GR                         +PV V
Sbjct: 281 TSQLRCVPFMVLLLAVNAAFAPCMALLAGRGGADGQGVVRRVRNPNASSGQRQELFPVFV 340

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
           L LE    +VD+   P K+++ F +    RN  I  +   +++   +  S + + +  +F
Sbjct: 341 LNLECPRSEVDIMSDPEKTWVEFSDWAAARNACISMLLAFLSRFSHAVPSSVLRDLRRAF 400

Query: 346 HQD 348
           H++
Sbjct: 401 HKN 403



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 19/210 (9%)

Query: 354  HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
               K A    +    L  +  R     L    D   +                 +   Q 
Sbjct: 1350 EAEKAAPEKDSRYNPLPGRRERQIPQVLQAGQDEVGAGAGAVAVTVTPEELSEALLIGQA 1409

Query: 414  HQNYIISQTTDG-LVIVDQHAAHERLIFEKMRQDFNSTK-----ITSQTLLTPEIIDLLE 467
             + +I+ +   G ++ +DQHAA ER+  E++ +           +    L  PE + +  
Sbjct: 1410 GRKFILLRAKTGAVLCLDQHAADERVKLEELERQVFGEGRERRNVERLLLDPPEKLSITR 1469

Query: 468  GECALIMEHDEDLHRLGIKAE----RFGPN----AIAIREIPAILSKKNIPQLLRDIIDE 519
             +  L+ EH E L     +      + G +     + +  +P +   +   Q     +  
Sbjct: 1470 SDAELLEEHREVLSSWQFEVRVDQAQQGGDGLTPVVTLTAVPMVCGVRLSVQDFVGFLHF 1529

Query: 520  IIDS-----STTYTLQDRIENILATMACYG 544
            + +S     S       ++++IL   AC+ 
Sbjct: 1530 LRESVEPGQSARRLRPPQVQHILNYKACHS 1559


>gi|316969662|gb|EFV53722.1| mismatch repair endonuclease PMS2 [Trichinella spiralis]
          Length = 765

 Score =  136 bits (343), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 13/185 (7%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +I+++  D L I+DQHA+ E+  FE MR+   ST + SQ L+ P   +L 
Sbjct: 580 MHVIGQFNCGFILTRLDDDLFILDQHASDEKRTFETMRR---STVVQSQLLVHPICSNLT 636

Query: 467 EGECALIMEHDEDLHRLG--IKAERFGPNA-IAIREIPAILSKKNIPQLLRDIIDEIIDS 523
             +  +I+E+ E    LG   +    G +  + I  +P    +    +   D  D I+ S
Sbjct: 637 PFDRHVILENLETFKNLGYTFQFPPEGSDEPVKIVSLPVCHGQIFDQRG--DTTDNILTS 694

Query: 524 STT-----YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +++       +  +I +ILA+ AC  S+  G  +   EM +++  +    +   C HGRP
Sbjct: 695 NSSFRVGNLCMPTKIRSILASRACRKSVMIGTALSMEEMQQIVERLSSIEHPWNCPHGRP 754

Query: 579 TFIKL 583
           T   L
Sbjct: 755 TVRHL 759



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 116/297 (39%), Gaps = 29/297 (9%)

Query: 82  DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG-----EKISSVRPVAM 136
           DD S + TFGFRGEAL ++  +  + + +R   +    Q+         ++++  R V  
Sbjct: 2   DDLSRMKTFGFRGEALCALCLIGDVIITTRHADSELAYQLHFDRSGQLTKQVACSRQVRQ 61

Query: 137 NPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
             GT VEV ++F   P R    ++S Q E   +  +++  A+    +       +    +
Sbjct: 62  IIGTTVEVAEIFHPFPVRRKSLIRSVQKEWPKLMHMLQSYALLPSALRLQVVNKQKGGKQ 121

Query: 196 MNFQSTNG--NFPERISQVIGEDFINNAVELNE-------------------KSNEITLQ 234
               S     N  E I  V     +   +E  +                   + ++I + 
Sbjct: 122 SVAFSALSSENLRENICSVFDVGQLRLLMEFVQTVPNEETLEQYLVKNFDPAEIDKIKIV 181

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP-R 293
           G+       R + ++ + ++N R  + + I   +   Y +  P+ +YPV VL + +    
Sbjct: 182 GFVSSVQQGRSSGDRQFTYVNNRPCEIRKITQLVNEVYHQFNPV-QYPVFVLYINVPTAE 240

Query: 294 QVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
            +DVN  P K  +      ++   +  S+ +   +  +  S     K + +   ++A
Sbjct: 241 MLDVNCTPDKRLVYISRENLLLAILRHSLTEMYGQSSVIMSCSSRWKTLDTPQIEDA 297


>gi|296414414|ref|XP_002836896.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295632738|emb|CAZ81087.1| unnamed protein product [Tuber melanosporum]
          Length = 906

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 10/158 (6%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L E +  +I +   I   S  I EL++N++DA +  V   +   G++   + D+G 
Sbjct: 7   PIRLLPESVSARIRSTLTITNISDVISELLQNAIDAGARNVAIAV-NLGRNSCVLEDDGH 65

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+T E + +  + H TSK          FGFRG+AL +I   S  T+ SR   +      
Sbjct: 66  GVTPEGMLLVGREHATSKYPPAGD----FGFRGQALSAICRHSLTTITSRADASGRTVMR 121

Query: 122 AISGEKISSVRPVA-----MNPGTIVEVRDLFFTIPAR 154
            +S  +                GT+V V  L+  +P R
Sbjct: 122 RVSYGRELFTGAAPEHLELRRSGTVVRVEGLWGDMPVR 159



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 72/198 (36%), Gaps = 40/198 (20%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNS-----TKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           LV+VDQHAA ER+  E +  +  S         ++         +   E  L   H    
Sbjct: 660 LVMVDQHAADERVRVEALFAELCSLEESPQGDQTRAQSGNLTYKISHREAELFTRHRASF 719

Query: 481 HRL----------GIKAERFGPNAIAIREIPAILSKKNI--PQLLRDII----------- 517
                        G + E    N + I  +P ++S +    P L+ DI+           
Sbjct: 720 SEWKIHYTIATNGGKEKEGAKENTLTITSLPRMVSDRCASEPSLMIDILRRHIPVLEDTT 779

Query: 518 --DEIIDSSTTYTL----------QDRIENILATMACYGSIRSGRKMQSIEMNRLLREME 565
               +  +ST  +L             + +++ + AC  +I     ++  E   L+ ++ 
Sbjct: 780 AMAHVGSASTASSLDPHAPLLSRCPTALVDMINSRACRSAIMFNDPLELDECRLLIGKLA 839

Query: 566 KNPNSSQCNHGRPTFIKL 583
           +     QC HGRP+ I L
Sbjct: 840 ECKFPFQCAHGRPSMIPL 857


>gi|328870673|gb|EGG19046.1| MutL DNA mismatch repair protein [Dictyostelium fasciculatum]
          Length = 1219

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 124/329 (37%), Gaps = 59/329 (17%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I KL + ++ +I +   I     AI+EL+ NS+DA ++ +   +       F++ D+G+G
Sbjct: 12  IHKLDDDVVVKIRSSVTIMAVDQAIEELVFNSIDAGATNILV-VYNASTLSFEVHDDGYG 70

Query: 63  MTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMS---------- 110
           +T E +    QR+CTSK    DD + I T G+RGE+L SI  ++ L + S          
Sbjct: 71  ITLEGLQEIGQRYCTSKCHTLDDLNYISTIGYRGESLASIAEIATLDIQSTTLCSQQQQQ 130

Query: 111 ---------------------------RPPQNNTGAQIAISGEKISSVRPVAMNP----- 138
                                      +     + A   I   K+  ++ V         
Sbjct: 131 QQQQQQQQQQQQQQQEQQEQQEQEQEQKDAAARSTASKLIQFGKLEYIKNVVTPGSGVPL 190

Query: 139 ----GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               GTIV+VRD+F  +P R   + +       +   I   A+++ ++  T      N+ 
Sbjct: 191 VKSLGTIVKVRDIFKNVPVRRQQI-NPATLRLAVKKRIECCALSHARIKITLYETSKNQ- 248

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEK-------SNEITLQGYTGIPT-FNRGN 246
           K+     + NF    S   G         ++                GY  +P      N
Sbjct: 249 KLVSLPPDQNFFSLFSLYYGLPKAQTLEFISSSADVIKGLPIGYKFTGYLTLPNEHGIPN 308

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAYAET 275
            +   V++N R + +  I   +   Y + 
Sbjct: 309 RSLQLVYLNRRLITNTKIHRLVNELYKKY 337



 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 18/225 (8%)

Query: 373  ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQ--LGIACAQIHQNYIISQTTDGLVIVD 430
            E R+    +                E   +           Q  + +++ ++   L  +D
Sbjct: 969  EKRIEIPTIPMDISRNIMTMMKASAEKPISRTMLEQARFITQWQKKFLLCESQGVLFALD 1028

Query: 431  QHAAHERLIFEKMRQDF--------------NSTKITSQTLLTPEIIDLLEGECALIMEH 476
            QHA HER+  EKM+  +                 K     +           E  LI   
Sbjct: 1029 QHAIHERIRLEKMQDLYKLGPYDICRVDSDKYEYKFDLSPMRPGTRWPFTAHEMELIDTF 1088

Query: 477  DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRIEN 535
              +L   G   +  G  AI I  +P           LR+ +  +  +     T  D ++ 
Sbjct: 1089 SRNLKLWGFTYKV-GNGAIFIESVPMFCLTCLGHNDLREFLYTLESNGGQMATRPDAVDR 1147

Query: 536  ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            I+   AC  +I+ G  +       LL+E+       QC HGR + 
Sbjct: 1148 IIRNKACRSAIKFGHTLGHERSCELLKELATCRLPFQCVHGRSSM 1192


>gi|157418817|gb|ABV55114.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 317

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 15/182 (8%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSN 86
           ELIEN+ DA++  +   ++        + D G G+   + P+   R  TSKI+  +D  +
Sbjct: 1   ELIENATDADAPAIGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITAFNDIYS 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPV 134
           I +FGFRGEAL SI  VS + ++S+         + ++                      
Sbjct: 61  IQSFGFRGEALASISYVSRMIVISKVENQPGHLAVYMNGKLHFDPETLAAEYTDFFTSTF 120

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKSNR 193
           A N  TI+ V DLF+    R N +++ +   ++   ++   A  +  + S +F +     
Sbjct: 121 ASNSFTIICVTDLFYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQAI 180

Query: 194 YK 195
            +
Sbjct: 181 QR 182


>gi|68491028|ref|XP_710686.1| hypothetical protein CaO19.1605 [Candida albicans SC5314]
 gi|68491047|ref|XP_710677.1| hypothetical protein CaO19.9173 [Candida albicans SC5314]
 gi|46431910|gb|EAK91429.1| hypothetical protein CaO19.9173 [Candida albicans SC5314]
 gi|46431920|gb|EAK91438.1| hypothetical protein CaO19.1605 [Candida albicans SC5314]
          Length = 776

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 106/311 (34%), Gaps = 23/311 (7%)

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
                  N +P K  +           I    +          S  L + M+ + +    
Sbjct: 442 HQDNHGKNFYPVKHKLDDSEEEN-MTVISIGDETFQQYDERRPSKRLKRDMLRNMYNKKI 500

Query: 351 PKTHLPKYATSLTNTQEKLFLQEN-----------RLSTNDLLPSDDPTYSEDNDPVEES 399
             +     ++   N Q      E+             S  DL  +    Y E        
Sbjct: 501 VNSSQDILSSINKNLQSPQNQSESIVIKKEPDEVKPNSVEDLQTNQQQQYEEVESYQINK 560

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
           +       I    +    +     + L I+DQHA+ E+  FEK+     S KI  Q L+ 
Sbjct: 561 QDFLKMKLIGQFNLGFIIVDFDDNNNLFIIDQHASDEKYNFEKLM---ASFKINYQLLIK 617

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFG---PNAIAIREIPAI----LSKKNIPQL 512
           P  ++L   +  L++++ E  H  G K +       N I +  +P       +  +  +L
Sbjct: 618 PIKLELSVIDQMLVIDNQEIFHNNGFKLKINSTPVDNEILLLTLPIYQNITFNLDDFNEL 677

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           L +++ +  D         +I+ ILA  AC  SI  G  +   +M  ++  +        
Sbjct: 678 L-NLVSQQQDQVNPNLKCSKIKKILAMKACRSSIMIGTFLSKSKMREIISNLSTLDKPWN 736

Query: 573 CNHGRPTFIKL 583
           C HGRPT   L
Sbjct: 737 CPHGRPTMRHL 747



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 182/484 (37%), Gaps = 66/484 (13%)

Query: 138 PGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196
            GT + +  LF  +P R  NF+K+ + E +   + +    I YP++ FT   + +N  K+
Sbjct: 18  SGTSIMIEQLFKNLPVRLKNFVKNSKKEFSKAINFVINYLIIYPQIKFTIYNVLNNHKKL 77

Query: 197 NFQSTNGN---FPERISQVIGEDFINNAVELNEKSN-EITLQGYTGIPTFN--RGNANQF 250
              +  G+     + +  + G +   N + L+ +   +I L GY    +F   R   ++ 
Sbjct: 78  ILATKGGDNTTIIDNLISIYGNNNNKNLLSLDLEITEDIKLVGYISSYSFGLGRSAPDRQ 137

Query: 251 YVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRN 310
           ++++N R +  K +   I   Y     + +YP+ ++ + I+P  VD+N+ P K+ +  ++
Sbjct: 138 FLYLNKRPIVFKKLYKLINEIYKSYNHV-QYPIYIIDIVINPNLVDINLLPDKTNVLIKD 196

Query: 311 PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA------TSLTN 364
            T I   I   + +    +            + +   +   KT     A      TS   
Sbjct: 197 ETTILQTIETKLSEFFEVQDTMIIPKNENYQVKNSEIEIVEKTDNKNIAVHDDIDTSYKT 256

Query: 365 TQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTD 424
                 L+      +DL  +D    + D D  E+      Q       +       + TD
Sbjct: 257 KINATRLEGPSEDKDDLNGNDKQEKTGDQDEQEQENDDEQQRPEVDNDVINLSEPVRKTD 316

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
                D     E    E +     + +I++    +     L   E   + E+        
Sbjct: 317 --KDSDNKKVSEIDNNENV-----ANQISTVNQPSNSQGVLSTNEQNEMSEN-------- 361

Query: 485 IKAERFGPNAIAIREI-PAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACY 543
           IK   F P    +    P+ +  K+I      I+DE +   ++   ++   +I ++    
Sbjct: 362 IKITTFEP---ILESAEPSTIENKHI------ILDEPVVLESSQ--ENNNNSIFSS---- 406

Query: 544 GSIRSG-------RKMQSIEMNRLL------REMEKNPNSSQCNHGR---PTFIKLKLSD 587
             I+S          +   EMN+L        E +K  +  Q NHG+   P   KL  S+
Sbjct: 407 HDIKSSPQNTCTADTL---EMNKLFCHQEHDEEEDKCDH--QDNHGKNFYPVKHKLDDSE 461

Query: 588 IEKL 591
            E +
Sbjct: 462 EENM 465


>gi|157418815|gb|ABV55113.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 317

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 25/223 (11%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSN 86
           ELIEN+ DA++  +   ++        + D G G+   + P+   R  TSKI+  +D  +
Sbjct: 1   ELIENATDADAPAIGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITAFNDIYS 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM---------- 136
           I +FGFRGEAL SI  VS + ++S+      G        K+                  
Sbjct: 61  IQSFGFRGEALASISYVSRMIVISKVENQP-GHLAVYMNGKLHFDPETLAAEYTDFFTST 119

Query: 137 ---NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS- 191
              N  TI+ V DLF+    R N +++ +   ++   ++   A  +  + S +F +    
Sbjct: 120 LASNSFTIICVTDLFYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQA 179

Query: 192 -------NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
                      ++  S   +    I +          V    +
Sbjct: 180 IQRELQAWLDDIHTTSGMLSLISNIIESGVTALHFKPVTTRYE 222


>gi|157418823|gb|ABV55117.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 317

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 23/222 (10%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSN 86
           ELIEN+ DA++  +   ++        + D G G+   + P+   R  TSKI+  +D  +
Sbjct: 1   ELIENATDADAPAIGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYS 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPV 134
           I +FGFRGEAL SI  VS + ++S+         + ++                     +
Sbjct: 61  IQSFGFRGEALASISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTL 120

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS-- 191
             N  TI+ V DLF+    R N ++S +   ++   ++   A  +  + + +F +     
Sbjct: 121 VSNSFTIICVTDLFYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAT 180

Query: 192 ------NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
                     ++  S   +    I +          V    +
Sbjct: 181 QRELQAWLDDIHTTSGMLSLISNIIESRVTALHFKPVTTRYE 222


>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 86/229 (37%), Gaps = 37/229 (16%)

Query: 400  EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM-------------RQD 446
            +   +       Q +  +II +    L IVDQHAA E+  FE +                
Sbjct: 3428 KKQDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFEHLAQSTVLNQQPLLRYGV 3487

Query: 447  FNSTKITSQTLLT------PEIIDLLEGECALIMEHDEDLHRLGIKAERF----GPNAIA 496
             N  ++TS  LL       P  +DL   E  +   H + + + G   E            
Sbjct: 3488 QNIHEVTSIELLCVSYTIGPLRLDLSPEEEVIAFIHMDIIRKNGFALEEDLHAPPGQRFK 3547

Query: 497  IREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL-------------QDRIENILATMACY 543
            ++ +P   +     + ++++I  + D     ++               R+  +LA+ AC 
Sbjct: 3548 LKAVPFSKNITFGVEDVKELISTLADGQGECSILGTYKMDTCDSICPSRVRAMLASRACR 3607

Query: 544  GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL-KLSDIEKL 591
             S+  G  +   EM R+L  +    +   C HGRPT   L  L+ I KL
Sbjct: 3608 SSVMIGDPLGRKEMQRILEHLSDLKSPWNCPHGRPTMRHLVDLTTIYKL 3656



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 44/69 (63%)

Query: 2    KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
             IR +++  +++I +G++I   S A+KEL+ENSLDA ++ +E  +   G+ +FQ+ DNG 
Sbjct: 2767 TIRAINKGAVHRICSGQVILDLSSAVKELVENSLDAGATSIEIALKEYGQEWFQVIDNGC 2826

Query: 62   GMTSEEIPM 70
            G+      +
Sbjct: 2827 GIXPNNFKL 2835



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 9/304 (2%)

Query: 184  FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK-SNEITLQGYTGIPTF 242
             T +T K+ +  +     +G+  + I  V G +  N    LN   S+   + G+     +
Sbjct: 2898 CTNTTGKNVKSMVLKTQGSGSLKDNIITVFGMNTFNCLEPLNICLSDSSKVDGFVSKSGY 2957

Query: 243  N--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVH 300
               R   ++ + F+NGR V    +   +   Y       +YP+ ++   +  R  DVNV 
Sbjct: 2958 GSGRTLGDRQFFFVNGRPVDMPKVGKLVNELYKGANSR-QYPIAIMNFTVPTRAYDVNVT 3016

Query: 301  PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
            P K  I F +   I + + + ++K  +    S S    ++                   +
Sbjct: 3017 PDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETBNSELNPPQTQILXS 3076

Query: 361  SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
            S     +   LQE   S   +     P+    +                   I +++ + 
Sbjct: 3077 SKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDSIEKDFSLR 3136

Query: 421  QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
                G+   D   +  +   EK     NS  I  Q L   E++            H   +
Sbjct: 3137 --VHGIKKAD---SFPKWDSEKTTMTINSDTIDHQVLSLSEMVVKGAVGNKGSSSHSSYI 3191

Query: 481  HRLG 484
               G
Sbjct: 3192 QSFG 3195


>gi|157418821|gb|ABV55116.1| DNA repair protein MutL-like protein [Giardia intestinalis]
 gi|157418825|gb|ABV55118.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 317

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 23/222 (10%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSN 86
           ELIEN+ DA++  +   ++        + D G G+   + P+   R  TSKI+  +D  +
Sbjct: 1   ELIENATDADAPAIGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYS 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPV 134
           I +FGFRGEAL SI  VS + ++S+         + ++                     +
Sbjct: 61  IQSFGFRGEALASISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTL 120

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS-- 191
             N  TI+ V DLF+    R N ++S +   ++   ++   A  +  + + +F +     
Sbjct: 121 VSNSFTIICVTDLFYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAI 180

Query: 192 ------NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
                     ++  S   +    I +          V    +
Sbjct: 181 QRELQAWLDDIHTTSGMLSLISNIIESGVTALHFKPVTTRYE 222


>gi|157418819|gb|ABV55115.1| DNA repair protein MutL-like protein [Giardia intestinalis]
          Length = 317

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 23/222 (10%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSN 86
           ELIEN+ DA++  +  +++        + D G G+   + P+   R  TSKI+  +D  +
Sbjct: 1   ELIENATDADAPAIGLLVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYS 60

Query: 87  IHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPV 134
           I +FGFRGEAL SI  VS + ++S+         + ++                     +
Sbjct: 61  IQSFGFRGEALASISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTL 120

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS-- 191
             N  TI+ V DLF+    R N ++S +   ++   ++   A  +  + + +F +     
Sbjct: 121 VSNSFTIICVTDLFYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAI 180

Query: 192 ------NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
                     ++  S   +    I +          V    +
Sbjct: 181 QRELQAWLDDIHTTSGMLSLISNIIESGVTALHFKPVTTRYE 222


>gi|51094589|gb|EAL23841.1| similar to PMS4 homolog mismatch repair protein - human [Homo
           sapiens]
          Length = 197

 Score =  133 bits (334), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 30/184 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G+                           +   G    +++ NG G
Sbjct: 30  IKPIDRKSVHQICSGQ---------------------------LKDYGVDLIEVSGNGCG 62

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ 120
           +  E       +H TSKI +  D   + TFGFRGEAL S+ A+S +T+ +       G +
Sbjct: 63  VEEENFEGLTLKHHTSKIQEFADLPQVETFGFRGEALSSLCALSDVTISTCHVSAKVGTR 122

Query: 121 IAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +      KI    P     G  V V+ LF T+P      +    +              +
Sbjct: 123 LVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVHHKEFQRNIKKKRACFPFAFCRDCQF 182

Query: 180 PKVS 183
           P+ S
Sbjct: 183 PEAS 186


>gi|167948077|ref|ZP_02535151.1| DNA mismatch repair protein [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 73

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 2/71 (2%)

Query: 30 LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNI 87
          +IENSLDA ++R+E  +  GG    Q+ DNG G+  +E+ +A+ RH TSKI+  DD   I
Sbjct: 1  MIENSLDAGATRIEIEVEQGGIKRIQVRDNGVGIHKDELTLALSRHATSKIASLDDLEQI 60

Query: 88 HTFGFRGEALP 98
          H+ GFRGEAL 
Sbjct: 61 HSMGFRGEALA 71


>gi|330903915|gb|EGH34487.1| DNA mismatch repair protein [Pseudomonas syringae pv. japonica
          str. M301072PT]
          Length = 97

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSN 86
          EL+ENSLD+ + R++  +   G    ++ D+G G++S+++P+A+ RH TSKI D  D   
Sbjct: 1  ELLENSLDSGARRIDVDVEQAGIKLLKVRDDGGGISSDDLPLALARHATSKIRDLEDLER 60

Query: 87 IHTFGFRGEALP 98
          + + GFRGEAL 
Sbjct: 61 VMSLGFRGEALA 72


>gi|330862099|emb|CBX72265.1| hypothetical protein YEW_EM19550 [Yersinia enterocolitica W22703]
          Length = 117

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTL 108
           ++  +I DNG G+  +++ +A+ RH TSKIS  +D   I + GFRGEAL SI +VS L L
Sbjct: 16  RNLIRIRDNGCGIGKDDLALALARHATSKISSLEDLEAILSMGFRGEALASISSVSRLIL 75

Query: 109 MSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
            SR  + N   Q    G           + G
Sbjct: 76  TSRTAEQNEAWQAYAEGRDTGRDHQTCGSSG 106


>gi|218512334|ref|ZP_03509174.1| DNA mismatch repair protein [Rhizobium etli 8C-3]
          Length = 87

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 64/83 (77%)

Query: 512 LLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSS 571
           L+R + DEI +  T   L  ++E + ATMAC+GS+RSGR+++  EMN LLREME  P S 
Sbjct: 4   LIRQLADEIAEWDTASGLSAKLEYVAATMACHGSVRSGRRLRPEEMNALLREMEVTPGSG 63

Query: 572 QCNHGRPTFIKLKLSDIEKLFGR 594
           QCNHGRPT+I+LKLSDIE+LFGR
Sbjct: 64  QCNHGRPTYIELKLSDIERLFGR 86


>gi|330948578|gb|EGH48838.1| DNA mismatch repair protein [Pseudomonas syringae pv. pisi str.
          1704B]
          Length = 73

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 51/70 (72%)

Query: 5  KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
           LS ++ NQIAAGE++ERP+  IKEL+ENSLD+ + R++  +   G    ++ D+G G++
Sbjct: 4  LLSPRLANQIAAGEVVERPASVIKELLENSLDSGARRIDVDVEQAGIKLLKVRDDGGGIS 63

Query: 65 SEEIPMAVQR 74
          S+++P+A+ R
Sbjct: 64 SDDLPLALAR 73


>gi|207341693|gb|EDZ69678.1| YNL082Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 420

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 32/388 (8%)

Query: 208 RISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               +   D   +  ++ E+     + G           A+      N            
Sbjct: 38  EFQNITSPDKARSLEKVVEEPVYFDIDGEKFQEKAVLSQADGLVFVDNECHEHTNDCCHQ 97

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
            R    +T          +  EI+P +++V   P K+          R  I +   ++++
Sbjct: 98  ERRGSTDTEQDDE--ADSIYAEIEPVEINVRT-PLKNS---------RKSISKDNYRSLS 145

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
             G++      + +  +    N  +        S   ++ K   QEN +   D L   + 
Sbjct: 146 D-GLTHRKFEDEILEYNLSTKNFKEISKNGKQMSSIISKRKSEAQENIIKNKDELEDFEQ 204

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----TTDGLVIVDQHAAHERLIFEKM 443
                   V ++    ++      Q +  +II          L IVDQHA+ E+  FE +
Sbjct: 205 GEKYLTLTVSKN---DFKKMEVVGQFNLGFIIVTRKVDNKYDLFIVDQHASDEKYNFETL 261

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIR 498
           +     T   SQ L+ P+ ++L   +  +++++     + G K      E FG   + + 
Sbjct: 262 QAV---TVFKSQKLIIPQPVELSVIDELVVLDNLPVFEKNGFKLKIDEEEEFGSR-VKLL 317

Query: 499 EIPAILSKKNIPQLLRDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSI 555
            +P             ++I  I +            +I ++ A  AC  SI  G+ +   
Sbjct: 318 SLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIRSMFAMRACRSSIMIGKPLNKK 377

Query: 556 EMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            M R++  + +      C HGRPT   L
Sbjct: 378 TMTRVVHNLSELDKPWNCPHGRPTMRHL 405


>gi|302840656|ref|XP_002951883.1| hypothetical protein VOLCADRAFT_61856 [Volvox carteri f.
           nagariensis]
 gi|300262784|gb|EFJ46988.1| hypothetical protein VOLCADRAFT_61856 [Volvox carteri f.
           nagariensis]
          Length = 187

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 7/178 (3%)

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
               Q +  +I+++    + IVDQHAA E+  FE++++    T+      +      LL 
Sbjct: 1   QVLGQFNLGFILARHGPDVFIVDQHAAAEKTTFERLQRSVVLTRQPLLVPMALPAGVLLP 60

Query: 468 GECALIMEHDEDLHRLGIKA-ERFGPNAIAI-REIPAILSKKNIP-QLLRDIIDEIIDSS 524
            +  +I EH +   R G    ER     + +   +P   +   +  + + +++  +    
Sbjct: 61  VDQLIIREHIDVFRRNGFDFVERLPDGRLLLLSSVPVSRATGQLGMEDVVELVGMLRSGE 120

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                   I  +LA+ AC  S+  GR +   EM RLL  +        C HGRPT   
Sbjct: 121 GAGG----IRAMLASRACRSSVMVGRPLNRGEMRRLLDGLADLRQPWNCPHGRPTMRH 174


>gi|316977014|gb|EFV60194.1| MutL C dimerization domain protein [Trichinella spiralis]
          Length = 785

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 105/613 (17%), Positives = 190/613 (30%), Gaps = 76/613 (12%)

Query: 20  IERPSIAIKELIENSLDAESS--RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           +   S  ++ L+ NSL A SS   +   +    K  FQI D+G GM    +        T
Sbjct: 14  VLSFSDCVQILLLNSLRASSSIVVIRVHVE---KFKFQIIDDGDGMDQTML--------T 62

Query: 78  S--KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA------------ 122
           S  K+     ++               ++  + + SRP     G +              
Sbjct: 63  SSDKMPAYLKDV-------------CKLADEVIIHSRPRGRAVGFKARYCAALKRSVDGS 109

Query: 123 -----ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                    K S         GT + V+ LF   P R   +K  Q   NL   + R +++
Sbjct: 110 RTFSDCFFLKDSVQIQSRKCHGTTITVQKLFSKTPVRQKSIKPSQELENLKLRL-RWISV 168

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTN---GNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
            +PKV                        +F +   ++      +     NE        
Sbjct: 169 KHPKVIIELHDESDQSCAFRSTRCETLSESFLQLFFEIYPHQLSDQIRFENEDFKLSLWI 228

Query: 235 GYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL-EID 291
           G     T +      N   +F          +      +  E +  GR     + L  ID
Sbjct: 229 GTEESNTVSLQCIYWNDIPIFWQTELHTFVLVFHIDVISLIEKLKNGRKDSCSVFLLTID 288

Query: 292 PRQV-DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
            R V    V   ++         +   I    QK ++      +  L  K          
Sbjct: 289 TRLVERFMVEGLRAIESCYKWKSLLEAIESLFQKPLSNGDSLQNEKLLSKENRCLLPGCK 348

Query: 351 PKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIAC 410
               L +  T+L           ++        S        N  VE+            
Sbjct: 349 FSFQLHENFTNLLPLLNDEKRSISQTPIYSNSTSKCTVEENSNILVEDEMQLVAVSSPVI 408

Query: 411 AQIHQNYIISQTTDG---------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE 461
           AQ    ++I + T           L++ DQHA  ER+  E++ ++       ++  L+  
Sbjct: 409 AQYDCKFVICRATVESKQNDRTALLLLFDQHAVSERVRLEQLLREHIVEGRIARARLSH- 467

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI--------PQLL 513
            I++     +      + + R GI+   F  +   I  +P   ++            + L
Sbjct: 468 PIEINFFNSSKWFSFKDIIERYGIEI-NFENSRYLIFTVPICFARGKWNISQNCITARFL 526

Query: 514 RDIIDEIIDSST---TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
           + +  +I++  +      L        A  AC G IR G ++   +   L+R++ +    
Sbjct: 527 KSVFQQILEFGSLPSRRKLPPIFRRSFADWACRGGIRFGDRLTLNQCQNLIRQLVECEAP 586

Query: 571 SQCNHGRPTFIKL 583
             C HGR + + L
Sbjct: 587 FHCAHGRRSVVPL 599


>gi|302406813|ref|XP_003001242.1| DNA mismatch repair protein mutL [Verticillium albo-atrum VaMs.102]
 gi|261359749|gb|EEY22177.1| DNA mismatch repair protein mutL [Verticillium albo-atrum VaMs.102]
          Length = 628

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/279 (24%), Positives = 114/279 (40%), Gaps = 13/279 (4%)

Query: 92  FRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS--------VRPVAMNPGTIVE 143
           FRGEAL SI  ++HL++ ++   +    +      K++          + VA   GT + 
Sbjct: 40  FRGEALASISHIAHLSVTTKTKDSAVAWRAHFLDGKLAPAKPGQSAEPKKVAGRDGTQIS 99

Query: 144 VRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNG 203
           V DLFF IP R    +S   E N I D++ R AI    V+F+      +   ++ Q++  
Sbjct: 100 VEDLFFNIPTRRRAFRSPSEEYNKIIDMVGRYAIHCQGVAFSCKKQGESGASVSVQASAS 159

Query: 204 NFPERISQVIGEDFINNAVEL--NEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQD 261
              +R+ Q+ G    N  +E   ++        G      ++        +FIN R V+ 
Sbjct: 160 TT-DRVRQIYGSSVGNELIEFATSDDRWAFKADGLVTNANYHIKKTTFL-LFINHRCVES 217

Query: 262 KFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
             I   I   YA  +P    P + L LEIDP +VDVNV   +   +       R F+ Q+
Sbjct: 218 TTIRKAIEQVYATFLPKNGRPFIYLSLEIDPARVDVNVVCEQVRTKLAEVDTSRTFMTQT 277

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           +     +   + S    +    +        +  P+  +
Sbjct: 278 LLPG-AQWTDAASKSAVEDGDGAPPLAATSGSSRPRRNS 315


>gi|189196580|ref|XP_001934628.1| DNA mismatch repair protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187980507|gb|EDU47133.1| DNA mismatch repair protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 968

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVE--TVIAGGGKSFFQITDN 59
            I  L E ++ QI +   I   +  + EL++NSLDA+++++E     A GG +   + DN
Sbjct: 8   SILPLPEDVVAQIKSSTAILSLTDVLTELVKNSLDAKATKIEATVDFARGGCT---VEDN 64

Query: 60  GFGMTSEEIP---MAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
           G G++  E        + +CTSK    +        G  G  L S+ AVS LT+ SR  +
Sbjct: 65  GLGISPLEFREDGGLGKLYCTSKYHARESL-----LGRNGTFLASLAAVSLLTIASRHHE 119

Query: 115 NNTGAQIAISGEKISS-------VRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVE 164
             +   +                 + +    GT V VR+LF  +P R    +    ++ E
Sbjct: 120 YRSHNSLTFHHSNTVERQLPASAHQELHAKHGTRVTVRNLFGNLPVRVKQRSMGSGQRAE 179

Query: 165 TNLITDVIRR 174
            + + D ++R
Sbjct: 180 HDRLWDQLKR 189



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 51/209 (24%)

Query: 426 LVIVDQHAAHERLIFEKMRQD---------------FNSTKITSQTLLTPEIIDLLEGEC 470
           LV++DQHAA ER+  E + ++                +   + S  L  P    +   E 
Sbjct: 725 LVLIDQHAADERVQVESLFRELCTPLPQARAYKSQLGHGVLVVSTMLEKPMQFAISSRER 784

Query: 471 ALIMEHDEDLHRLGIKAERF-----------GPNAIAIREIPAILSKKN--IPQLLRDII 517
                H       GI  +               + +++  +P  +S++    P++L   +
Sbjct: 785 THFTTHAARFAAWGILYDILVSAFSSSSLEKDKHVLSVTTLPPAISERCKADPKVLISFL 844

Query: 518 DE-------------IIDSSTTYTLQDRIENIL----------ATMACYGSIRSGRKMQS 554
                          +     +    D +  +            + AC  +I     ++ 
Sbjct: 845 RSTVWKYVEDAHLPPLPQHGYSANKDDWVRRLATCPPGLVDLVNSRACRSAIMFNDTLEI 904

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            E   L+R++        C HGRP+ + L
Sbjct: 905 EECIELVRKLADCVFPFMCAHGRPSMVPL 933


>gi|330932033|ref|XP_003303623.1| hypothetical protein PTT_15919 [Pyrenophora teres f. teres 0-1]
 gi|311320247|gb|EFQ88278.1| hypothetical protein PTT_15919 [Pyrenophora teres f. teres 0-1]
          Length = 966

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 25/190 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVE--TVIAGGGKSFFQITDN 59
            I  L E ++ QI +   I   +  + EL++NSLDA+++++E     A GG +   + DN
Sbjct: 8   SILPLPEDVVAQIKSSTAIVSLADVLLELLKNSLDAKATKIEATVDFARGGCT---VEDN 64

Query: 60  GFGMTSEEIP---MAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
           G G++  E        + +CTSK    +        G  G  L S+ A+S LT+ SR  +
Sbjct: 65  GLGISPLEFREDGGLGKLYCTSKYHARESL-----LGRNGTFLASLAAMSLLTVASRHHE 119

Query: 115 NNTGAQIAISGEKISS-------VRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVE 164
             +   +     K           + +    GT V VR+LF  +P R    + +  ++ E
Sbjct: 120 YRSHNSVTFHHSKPVERQLPASAHQELHAKHGTRVTVRNLFGNLPVRVKQRSMVSGQRAE 179

Query: 165 TNLITDVIRR 174
            + + D ++R
Sbjct: 180 HDRLWDQLKR 189



 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 51/209 (24%)

Query: 426 LVIVDQHAAHERLIFEKMRQD---------------FNSTKITSQTLLTPEIIDLLEGEC 470
           LV+VDQHAA ER+  E + +D                    + S  L  P    +   E 
Sbjct: 724 LVLVDQHAADERVQVETLFRDLCTPLPQALTYKSQLGQGVLVVSNMLEKPTQFVISNQES 783

Query: 471 ALIMEHDEDLHRLGIKAERF-----------GPNAIAIREIPAILSKKN--IPQLLRDII 517
                H       GI  +               + +++  +P  +S++    P++L   +
Sbjct: 784 MHFTTHAARFAAWGILYDILRSTSSSSSSEKDKHLLSVTTLPPAISERCKADPKVLISFL 843

Query: 518 DE-------------IIDSSTTYTLQDRIENIL----------ATMACYGSIRSGRKMQS 554
                          +    ++    D +  +            + AC  +I     +  
Sbjct: 844 RSTVWKYVEDPHLPPLPQHGSSANEDDWVRRLATCPPGLVDLVNSRACRSAIMFNDVLGI 903

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            E   L+ ++        C HGRP+ + L
Sbjct: 904 EECTELVHKLADCVFPFMCAHGRPSMVPL 932


>gi|290974082|ref|XP_002669775.1| predicted protein [Naegleria gruberi]
 gi|284083327|gb|EFC37031.1| predicted protein [Naegleria gruberi]
          Length = 419

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 38/192 (19%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+KL + + + + +G  I   S  IKELIEN+LDA+++ +E  +   GK    I DNG G
Sbjct: 77  IKKLPKHLQDTLKSGTNISSLSDCIKELIENALDAQATNIEIQLQ--GKECIIIKDNGHG 134

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIH---------------------------------T 89
           +  +      +R+ T K  + F+  +                                  
Sbjct: 135 IHQDNFETLCKRYYTHKFMNHFNTFNDNDKNVNNTTDNLNNNESSSNNHSHNNNENNNYY 194

Query: 90  FGFRGEALPSIGAVSH-LTLMSRPPQNNT--GAQIAISGEKISSVRPVAMNPGTIVEVRD 146
           +G++GEAL SI  +S  + + ++    +      I  +  +I S   + MN GTI+ ++D
Sbjct: 195 YGYKGEALNSICNLSKQVHIKTKYGDESELGTYLIYDTRGEIVSKTLIRMNRGTIITIQD 254

Query: 147 LFFTIPARLNFL 158
           LF TIP R    
Sbjct: 255 LFSTIPVRKKCF 266


>gi|119570619|gb|EAW50234.1| hCG1989139 [Homo sapiens]
          Length = 173

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 4/145 (2%)

Query: 43  ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSI 100
           +  +   G    +++DNG G+  E       +H T KI +  D + + TFGF+GEAL S+
Sbjct: 4   DLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTCKIQEFADLTEVETFGFQGEALSSL 63

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFL 158
            A+S +T+ +       G ++      KI    P     G  V V+ LF T+P R   F 
Sbjct: 64  CALSDVTISTCHASAKVGTRLVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVRHKEFQ 123

Query: 159 KSEQVETNLITDVIRRMAIAYPKVS 183
           ++ +                +P+ S
Sbjct: 124 RNIKKVQRACFPFAFCRDCQFPEAS 148


>gi|170111216|ref|XP_001886812.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164638170|gb|EDR02449.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 269

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           Q  D L IVDQHA+ E+  FE ++     T+I SQ L  P+ ++L   +  L  E+ E L
Sbjct: 80  QVMDDLFIVDQHASDEKYNFETLQLT---TRIQSQKLFRPQPLELTAADELLATENIEVL 136

Query: 481 HRLGIKAER-----FGPNA-IAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ-DRI 533
            + G + E       G  + + +   P   S     + L +II  + D  T   ++  + 
Sbjct: 137 RQNGFEIEVDDSECSGQGSRLKLVAQPISKSTVFGMKDLEEIIHLMRDRPTGQMVRCSKA 196

Query: 534 ENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             + A  AC  S+  G  + S +M  +LR M        C HGRPT   L
Sbjct: 197 RAMFAMRACRKSVMIGMPLNSHQMLTVLRHMGTIDQPWNCPHGRPTMRHL 246


>gi|253747389|gb|EET02113.1| Pms1-like protein [Giardia intestinalis ATCC 50581]
          Length = 731

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 16/352 (4%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR LS      I A +    P   I  L+ENSLDA ++ +  V+ G G     + DNG 
Sbjct: 13  RIRSLSASDSRLILATQQFPDPHRVISALLENSLDAGATEIAVVLEGAGIRSITVNDNGH 72

Query: 62  GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           G+    +        T +I+   S  +    +GE++  I A+  + + S    +    + 
Sbjct: 73  GIDLATLQTLG----TCRITTASSQSNVGAHKGESIFLISALGTVLITSSTGDDP--YER 126

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAIA 178
            +S +  ++     +  GT V ++ L+  +P R  +       +     IT+ I+  A+A
Sbjct: 127 VVSEDTCTARHATRVGVGTTVVIQSLYEPVPVRQKYFSLASPRKKLLLSITEAIQSYALA 186

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
              + F     +     +     N      I     +          E      ++    
Sbjct: 187 NYTLGFRLVMDEIAYVDVRSAPRNTIHERYIELFGQDLGSLVGFFSLETRLGYDVKASLA 246

Query: 239 IPTFNRG------NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
            P           +A + ++  NGR V    ++  I+  YA        P+  L L + P
Sbjct: 247 GPDTGVTKHTKLGHARKLFLSTNGRPVLCPTLIEAIQQTYARITATH-IPIGALNLTLPP 305

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
                        ++ +        + +     + +   S  +       + 
Sbjct: 306 GTYTFMRSTPYDTLQMQGLDTFAGLLSEEYLAWLLRHDKSIPANSYPNRSAP 357



 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 77/212 (36%), Gaps = 30/212 (14%)

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI 462
           ++       Q +Q+++++Q  D   ++DQHAAHE   F     +     ++ Q  + P  
Sbjct: 496 NFANLKYICQYNQSFLLAQLDDTFFLIDQHAAHEAKYFSDYWHNPQCY-LSKQKTIAPLK 554

Query: 463 IDLLEGECALIMEHDE--DLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII--- 517
           ++L   E   + E         +G +    G  A+ +   P++  +       R+ +   
Sbjct: 555 LELRPDEKLCLEEFLSSTLFDIIGFELRISGEYAL-LSAFPSLFGQTLTEDDFREYLLLL 613

Query: 518 --------------DEIIDSSTTYTL---------QDRIENILATMACYGSIRSGRKMQS 554
                          E  + S    L           RI  I A+ +C  S+R G  +  
Sbjct: 614 YGHTREYIESILRISEAEEKSREKMLVRILHNNIAPPRIRKIFASKSCKASVRLGDPLLD 673

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
               R++ ++        C HGRP    L L+
Sbjct: 674 STAKRIIADLAYCEKPFNCPHGRPVLRFLDLT 705


>gi|302852293|ref|XP_002957667.1| hypothetical protein VOLCADRAFT_35772 [Volvox carteri f.
           nagariensis]
 gi|300256961|gb|EFJ41216.1| hypothetical protein VOLCADRAFT_35772 [Volvox carteri f.
           nagariensis]
          Length = 159

 Score =  126 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++L   + ++I +G  +     A+ EL+ NS+D+ +  V  +      +F  + D+G G
Sbjct: 1   IQQLPGVLTDKIRSGVTLNSLPEAVAELLANSIDSGAKSVTVIFNPRALNFV-VEDDGHG 59

Query: 63  MTSEEIPMAVQRHCTSKISD--DFSN-IHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
           + S  +     R+CTSKI    D  N + T GFRGEA+ S+ +V+  + + +R       
Sbjct: 60  IAS--LDALGVRYCTSKIRSMADLRNGVRTLGFRGEAISSLFSVAEEVCITTRARGTFVT 117

Query: 119 ----AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN 156
                +   S  +         + GT V V+ L +  P R  
Sbjct: 118 LSKQVKSGGSHVQTGPSTVQLAHSGTTVSVKKLLYNQPVRQR 159


>gi|226293032|gb|EEH48452.1| DNA mismatch repair protein [Paracoccidioides brasiliensis Pb18]
          Length = 1014

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            I+ L   ++ Q+ +   I   +  + EL++NSLDA +    +      GG     + D+
Sbjct: 8   SIQPLPPDVVAQLKSSISISHLNGVVLELLKNSLDAGAETVSINVDFRRGGC---VVEDD 64

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK +     +  +G +G  L S+ +++ +T+ S    + 
Sbjct: 65  GHGIMPIEFLDGGKLAKLHHTSKFNS-LGEV--YGRKGLFLASLVSLALVTITSHHESDP 121

Query: 117 TGAQIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF  +P R+   
Sbjct: 122 TTNTLIYHRSKPISRLTPAPLHHELDSRDHGTRVTVTDLFGNLPVRVKHR 171



 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 61/223 (27%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP----------EIIDLLEGECA 471
               LV+VDQHAA ER   E++  D  +    S +  T            +  +   E  
Sbjct: 737 NQQNLVLVDQHAADERCRVEQLFDDLFAPSAESASSPTCGVNLSTLPKPIVFKVSLQEGE 796

Query: 472 LIMEHDEDLHRLG--IKAERFGPN--AIAIREIPAILSKKN--IPQLLRDIID-EIIDSS 524
           L+  H       G      R   N   + + ++P +++++    P+L++D++  EI D  
Sbjct: 797 LLQSHSNYFATWGCCYTLSRSEKNYRTVTVIKLPTLIAERCRLEPKLVKDLLRGEIWDRK 856

Query: 525 T--------------------------------------------TYTLQDRIENILATM 540
                                                               I ++L + 
Sbjct: 857 DYGRRCCTAGSQMLSKVPSEAGGLKEPPPKENVQPAAARHSWLERIGDCPKAIIDLLNSR 916

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           AC  S+     +   E   L+  + +     QC HGRP+ I +
Sbjct: 917 ACRSSVMFNDALSRDECENLVSRLARCAFPFQCAHGRPSMIPI 959


>gi|225683672|gb|EEH21956.1| DNA mismatch repair protein [Paracoccidioides brasiliensis Pb03]
          Length = 980

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            I+ L   ++ Q+ +   I   +  + EL++NSLDA +    +      GG     + D+
Sbjct: 8   SIQPLPPDVVAQLKSSISISHLNGVVLELLKNSLDAGAETVSINVDFRRGGC---VVEDD 64

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK +     +  +G +G  L S+ +++ +T+ S    + 
Sbjct: 65  GHGIMPIEFLDGGKLAKLHHTSKFNS-LGEV--YGRKGLFLASLVSLALVTITSHHESDP 121

Query: 117 TGAQIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF  +P R+   
Sbjct: 122 TTNTLIYHRSKPISRLTPAPLHHELDSRDHGTRVTVTDLFGNLPVRVKHR 171



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 61/199 (30%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP----------EIIDLLEGECA 471
               LV+VDQHAA ER   E++  D  +    S +  T            +  +   E  
Sbjct: 737 NQQNLVLVDQHAADERCRVEQLFDDLFAPSAESASSPTCGVNVSTLPKPIVFKVSLQEGE 796

Query: 472 LIMEHDEDLHRLG--IKAERFGPN--AIAIREIPAILSKKN--IPQLLRDIID------- 518
           L+  H +     G      R   N   + + ++P +++++    P+L++D++        
Sbjct: 797 LLQSHSDYFATWGCCYTLSRIEKNYRTVTVIKLPTLIAERCRLEPKLVKDLLRGEIWDRK 856

Query: 519 ----------------------EIID----------------SSTTYTLQDRIENILATM 540
                                 ++ +                          I ++L + 
Sbjct: 857 DHGRRCCTAGSQMLSKVPSEAGDLKEPPPKENVQPAAARHSWLERIGDCPKAIIDLLNSR 916

Query: 541 ACYGSIRSGRKMQSIEMNR 559
           AC  S+     +   E   
Sbjct: 917 ACRSSVMFNDALSRDECES 935


>gi|205829286|sp|P0C857|PM2LC_HUMAN RecName: Full=Putative postmeiotic segregation increased 2-like
           protein 12
          Length = 166

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)

Query: 43  ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSI 100
           +  +   G    +++DNG G+  E       +H T KI +  D + + TFGF+GEAL S+
Sbjct: 10  DLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTCKIQEFADLTEVETFGFQGEALSSL 69

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK 159
            A+S +T+ +       G ++      KI    P     G  V V+ LF T+P R    +
Sbjct: 70  CALSDVTISTCHASAKVGTRLVFDHYGKIIQKTPYPHPRGMTVSVKQLFSTLPVRHKEFQ 129

Query: 160 SEQVETNLITDVIRRM 175
               + +   D I R 
Sbjct: 130 RNIKKGSTSADFINRY 145


>gi|148229785|ref|NP_001085796.1| mutL homolog 3 [Xenopus laevis]
 gi|49115413|gb|AAH73356.1| MGC80774 protein [Xenopus laevis]
          Length = 1235

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 108/283 (38%), Gaps = 31/283 (10%)

Query: 73  QRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKIS 129
            R+ TSK     D  N+   GFRGEA+ SI  VS  + + S+    +      I   K+ 
Sbjct: 1   MRYYTSKCHSLNDLENLKFHGFRGEAIASIANVSSIVEVSSKCKNASKTFYKLIQNGKLL 60

Query: 130 SVRPVAM---NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           SV+       + GT   V +LF+ +P R   +  + VE   I   +  +++ +P VSF+ 
Sbjct: 61  SVQEADTSRPSAGTTFSVYNLFYNLPVRRKCMD-QTVEFENIRQRVESLSLIHPSVSFSL 119

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
               S    +   +   +   R  Q+ G        E+  K  E  + GY         N
Sbjct: 120 K-NDSMHSVVLQLAKTKDVRSRFCQIYGLPRSQKLCEIQHKVKEFDMWGYIS--CEAHYN 176

Query: 247 ANQFYVFINGRTVQDKFILSTI--------------RTAYAETIPLGR-------YPVVV 285
               Y+++N R V    +   I                   ++   GR       + + V
Sbjct: 177 KRMQYLYVNKRLVLKTKLHQLIDFLLRKESSICKPKNINVGKSSSPGRSRSCQELHGIFV 236

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
           + +     + DV   PAK+ I F++   + + + +  +  + +
Sbjct: 237 INIYCHYSEYDVCFEPAKTLIEFKDWDTVLHCVEEGTRAFLKR 279



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 84/220 (38%), Gaps = 27/220 (12%)

Query: 391  EDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS- 449
            E    V+  +    +               Q  + LV+VDQHAAHER+  E++  D    
Sbjct: 957  EMMHSVKVLQQVDNKFIACLMSTEMKVGSEQDGNLLVLVDQHAAHERVRLEQLIADSYES 1016

Query: 450  --------TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE--RFGPNAIAIRE 499
                     ++ +  +  P  +++ E +  L+         +G+           + +  
Sbjct: 1017 GPEDDAGRRQLKTSIISPPLELNVTEMQYRLLRVLARSSQNIGLSLSFPDTPGTRVLVSA 1076

Query: 500  IPAILSKKNI-----------PQLLRDIIDEIIDS-----STTYTLQDRIENILATMACY 543
            +P    ++               L+++ + E ++        + T+   +  +LA+ AC+
Sbjct: 1077 VPVCFVEREANEIHRGRSTVAKNLVQEFLQEQVELLQMTGRASGTIPLTVLKVLASQACH 1136

Query: 544  GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            G+++   K+   +   L++ + +     QC HGRP  + L
Sbjct: 1137 GAVKFNDKLSLDDCKHLMQCLSRCSLPFQCAHGRPAILPL 1176


>gi|325088725|gb|EGC42035.1| DNA mismatch repair protein [Ajellomyces capsulatus H88]
          Length = 994

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I+ L  ++I Q+ +   I   +  + EL++NSLDA +  V   +    GG     + D+
Sbjct: 7   SIQPLPPEVIAQLTSSIAISHLNGVVLELLKNSLDAGAKTVSINVDFPKGGC---VVEDD 63

Query: 60  GFGMTSEEI---PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H +SK +        +G +G  L S+ +++ +T+ SR    +
Sbjct: 64  GHGILPAEFLEGSNLAKLHHSSKFNSQHEV---YGRKGVFLASLVSLALVTITSRHESAS 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     +               + + GT V V DLF  +P R+   
Sbjct: 121 TTNTVMYHHARAISILTPAPLQHEINSRDHGTRVTVTDLFGNLPVRVKHR 170



 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 62/223 (27%)

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNS-------------TKITSQTLLTPEIIDLLEGE 469
              LV+VDQHAA ER   E++  +                 ++ + +L  P    +   E
Sbjct: 717 QQNLVLVDQHAADERCRVEQLFDELCGTTTATPDSSSFCRGRVNTASLPKPISFQVSPQE 776

Query: 470 CALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKN--IPQLLRDIID-EIID 522
             L+  H       G            + + + ++PA+++++    PQL  D++  EI D
Sbjct: 777 GELLKSHSGYFESWGCYYSLSNSERNYHTVTVDKLPALIAERCRLEPQLAIDLLRGEIWD 836

Query: 523 SST------------------------------------------TYTLQDRIENILATM 540
                                                               I ++L + 
Sbjct: 837 RKDHGRRDQTSFSPTLSSGNPEAGNSENSQGEAPPTIARQSWLERISDCPKAIVDLLNSR 896

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           AC  SI     +   E   L+ ++       QC HGRP+ I +
Sbjct: 897 ACRSSIMFNDILSPAECQNLISKLALCAFPFQCAHGRPSMIPI 939


>gi|167377623|ref|XP_001734471.1| DNA mismatch repair protein mutL [Entamoeba dispar SAW760]
 gi|165903994|gb|EDR29367.1| DNA mismatch repair protein mutL, putative [Entamoeba dispar
           SAW760]
          Length = 606

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 94/603 (15%), Positives = 178/603 (29%), Gaps = 96/603 (15%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           LIEN      S V            +I  NG  +  +EI           +++D      
Sbjct: 31  LIENK---GYSSVSIWCDK-EIKEIKIIVNGIQIDEQEINTL--------LNEDIFK--- 75

Query: 90  FGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG-------EKISSVRPVAMNPGTIV 142
                E    +  +S  T+++         +             K  S++   +N   IV
Sbjct: 76  -----E----LNNISRCTILTTLLSQEESIRYIYEKLTIKNGKWKSESLKEYQLNKQLIV 126

Query: 143 EVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTN 202
            +  LF   P R   +         I   I    I + K              +N Q T 
Sbjct: 127 YLERLFENTPERKETIS-------KIIQNIIGYHIIHYKKVIEIKWNNETCCLLNSQETM 179

Query: 203 GNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDK 262
               E I     ++F       +     +    Y             + + +N   +   
Sbjct: 180 KKSYENIFHYQMKEFSTLYSFNSITIYGLR---YLSKDMKWNNTKEHYIIMVNDYLICHN 236

Query: 263 FILSTIRTAYAETIPLGRY----PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFI 318
            +   I   + +   + +     P   L ++I         HP           ++   I
Sbjct: 237 SLNQMINQIHCKYFSIPQTHILTPPFFLQIKI------PLFHPQYPLYFEDENNLLLWII 290

Query: 319 IQSIQKAINKKGISTSSVLSKKMIS----------------------------------- 343
               ++   +  I    ++     S                                   
Sbjct: 291 KFLSKEFFQEILILPPPIIQYPFYSHIQLKHPKSSPPSPKKQRIFALSYSIQGRKIKEKE 350

Query: 344 --SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE--ES 399
             +  Q N  K  + KY  S +   +K          N+ + S D      N  +   + 
Sbjct: 351 KINLPQMNKTKYRMNKYKESKSRISKKTIYSIAIPYLNNNIISLDENIKYFNHIIPLNKI 410

Query: 400 EATHYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERLIFEK-MRQDFNSTKITSQT 456
                +      Q  + +II   +T   L   DQHA HER++FEK  +          Q+
Sbjct: 411 TKDDIKKIQVIGQFGKKFIICLNKTNGLLYGFDQHAVHERILFEKNWKMLEEEKSNYLQS 470

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
                 I +   +  ++ ++    + L I       N I     P +  K+     + DI
Sbjct: 471 FHCSLNIIVNSSQLQILQKYKYQFNNLNINYSIQ-YNKIYFNSFPILFGKQITCSEIMDI 529

Query: 517 IDEIIDSSTTYTLQ--DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +++I  S+    ++    I +I+A+ +C  +I     +   E  +L+ ++ +      C 
Sbjct: 530 VNQIDISNEFPPIKHISIIRHIVASQSCRNAIMFNDILTLEECQKLINQLSQCSCPFICA 589

Query: 575 HGR 577
           HGR
Sbjct: 590 HGR 592


>gi|295665793|ref|XP_002793447.1| DNA mismatch repair protein [Paracoccidioides brasiliensis Pb01]
 gi|226277741|gb|EEH33307.1| DNA mismatch repair protein [Paracoccidioides brasiliensis Pb01]
          Length = 1012

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            I+ L   ++ Q+ +   I   +  + EL++NSLDA +    +      GG     + D+
Sbjct: 7   SIQPLPLDVVAQLKSSISISHLNGVVLELLKNSLDAGAGTVSINVDFRKGGC---VVEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK +     +  +G +G  L S+ +++ +T+ SR   + 
Sbjct: 64  GHGIMPIEFLDGGKLAKLHHTSKFNS-LGEV--YGRKGLFLASLVSLALVTITSRHKSDP 120

Query: 117 TGAQIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF  +P R+   
Sbjct: 121 TTNTLIYHRSKPISRLTPAPLHHELDSRDHGTRVTVTDLFGNLPVRVKHR 170



 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 60/222 (27%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP----------EIIDLLEGECA 471
               LV+VDQHAA ER   E++  D  +    S +  T            +  +   E  
Sbjct: 736 NQQNLVLVDQHAADERCRVEQLFDDLFAPSAESDSFPTCGVNVSTLSKPIVFKVSLQEGE 795

Query: 472 LIMEHDEDLHRLG--IKAERFGPN--AIAIREIPAILSKKN--IPQLLRDIID-EIIDSS 524
           L+  H +     G      R   N   + + ++P +++++    P+L++D++  EI D  
Sbjct: 796 LLQSHSDYFATWGCCYTLSRGERNYRTVTVNKLPTLIAERCRLEPKLVKDLLRGEIWDRK 855

Query: 525 TTYTL-------------------------------------------QDRIENILATMA 541
                                                              I ++L + A
Sbjct: 856 DHGRRCCTAGSQMLSKVPSEAGDPKEPPKENVQPAAARHSWLERIGDCPKAIIDLLNSRA 915

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           C  S+     +   E   L+  + +     QC HGRP+ I +
Sbjct: 916 CRSSVMFNDALSRDECENLVSRLARCAFPFQCAHGRPSMIPI 957


>gi|225560451|gb|EEH08732.1| DNA mismatch repair protein [Ajellomyces capsulatus G186AR]
          Length = 994

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I+ L  ++I Q+ +   I   +  + EL++NSLDA +  V   +    GG     + D+
Sbjct: 7   SIQPLPPEVIAQLTSSIAISHLNGVVLELLKNSLDAGAKTVSINVDFPKGGC---VVEDD 63

Query: 60  GFGMTSEEI---PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H +SK +        +G +G  L S+ +++ +T+ SR    +
Sbjct: 64  GHGILPAEFLEGSNLAKLHHSSKFNSQHEV---YGRKGVFLASLVSLALVTITSRHESTS 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF  +P R+   
Sbjct: 121 TTNTVMYHHAKAISILTPAPLQHEINSRDHGTRVTVTDLFGNLPVRVKHR 170



 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 71/223 (31%), Gaps = 62/223 (27%)

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNS-------------TKITSQTLLTPEIIDLLEGE 469
              LV+VDQHAA ER   E++  +                 ++ + +L  P    +   E
Sbjct: 717 QQNLVLVDQHAADERCRVEQLFDELCDTTTATPDSSSFCRGRVNTASLPKPISFQVSPQE 776

Query: 470 CALIMEHDEDLHRLGIKAERFGPN----AIAIREIPAILSKKN--IPQLLRDIID-EIID 522
             L+  H       G              + + ++PA+++++    PQL  D++  EI D
Sbjct: 777 GELLKSHSGYFESWGCYYSLSSSERNYLTVTVDKLPALIAERCRLEPQLAIDLLRGEIWD 836

Query: 523 SSTTYTL------------------------------------------QDRIENILATM 540
                                                               I ++L + 
Sbjct: 837 RKDHERRDQTSFSQTLSSGNPEAGNSENSQGEASPTIARQSWLERISDCPKAIVDLLNSR 896

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           AC  SI     +   E   L+ ++       QC HGRP+ I +
Sbjct: 897 ACRSSIMFNDILSPAECQNLISKLALCAFPFQCAHGRPSMIPI 939


>gi|114618413|ref|XP_001175204.1| PREDICTED: similar to Chain A, N-Terminal 40kda Fragment Of Nhpms2
           Complexed With Adp, partial [Pan troglodytes]
          Length = 126

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++DNG G+  E       +H T KI +  D + + TFGF+GEAL S+ A
Sbjct: 2   KLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTCKIQEFADLTEVETFGFQGEALSSLCA 61

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +S +T+ +       G ++    + KI    P     GT V V+ LF T+P R    +  
Sbjct: 62  LSDVTISTCHASAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 121


>gi|21739376|emb|CAD38732.1| hypothetical protein [Homo sapiens]
          Length = 801

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 567 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 626

Query: 477 DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            ++L  LG          + + + ++P    ++                + + +R+ ++ 
Sbjct: 627 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLEL 686

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 687 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 746

Query: 579 TFIKLKLSDIEKL 591
           + + L  +DI+ L
Sbjct: 747 SMLPL--ADIDHL 757


>gi|67528334|ref|XP_661969.1| hypothetical protein AN4365.2 [Aspergillus nidulans FGSC A4]
 gi|40741336|gb|EAA60526.1| hypothetical protein AN4365.2 [Aspergillus nidulans FGSC A4]
 gi|259482825|tpe|CBF77674.1| TPA: DNA mismatch repair protein (Mlh3), putative (AFU_orthologue;
           AFUA_4G06490) [Aspergillus nidulans FGSC A4]
          Length = 870

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 32/216 (14%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTD----GLVIVDQHAAHERLIFEKMRQDFNSTKITSQ 455
                Q      Q+ Q +I+ +  D     LV++DQHAA ER   E++   F +      
Sbjct: 621 HKCDLQTARVIGQVDQKFILVEIPDANASTLVLIDQHAADERCRIERLYSGFFNGSEVQT 680

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERFGPNAIAIREIPAILSKK--- 507
             + P +I +   E +L  +  E     GI+         G  +I++  +P +++++   
Sbjct: 681 IEVEPIVIAIPPVETSLFRQQAEFFQSWGIEYMIGHASESGKASISVSALPTLIAERCRA 740

Query: 508 NIPQLLRDIIDEII----------DSSTTYTLQDR----------IENILATMACYGSIR 547
              QL+  +  EI           ++  T + +D           I ++L + AC  +I 
Sbjct: 741 EPEQLIGILRAEIWKRTEERPQTFNAKGTDSAEDWVRQIAGCPQGIRDMLNSRACRTAIM 800

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               +   E   L+  +       QC HGRP+ + L
Sbjct: 801 FNDVLSVDECRTLVSRLASCVFPFQCAHGRPSMVPL 836



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/442 (13%), Positives = 144/442 (32%), Gaps = 66/442 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I+ L + +  +I +  +I   +  + EL++N+LDA +  +   +    GG     + D+
Sbjct: 6   PIQPLPQDVAAKIRSSTLITHLNGVVLELVKNALDANAQCIFVTVDYRRGGC---VVEDD 62

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRP-PQN 115
           G G+   E        + H TS+         ++G +G  L S+ A+S LT+ S      
Sbjct: 63  GEGIAPAEFEPGGGLGKAHHTSRFGTS----SSYGRKGCFLASLSALSLLTITSHHYRHA 118

Query: 116 NTGAQIAISGEKISSVRPVAMN-------PGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +T   +      I+ + P   +        GT V   DLF  +P R         +  + 
Sbjct: 119 STNTVMFHHAHPIARLFPAPRHHRLKFSDHGTRVTANDLFGNMPVRVKSRALALQKPDQL 178

Query: 166 NLITDVIRR----MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI-----------S 210
           +   D +++    + I+  ++     +      K   +  +      +           +
Sbjct: 179 DHQWDDLKQLLVALMISNDRLQKLSVSETDKERKFTIRPRHDPLAGDLDLTRLSSILSQA 238

Query: 211 QVIGEDFINNAVELNEKSNEITLQGYTGI----------------PTFNRGNANQFYVFI 254
            ++    +     ++    ++T+     +                P F++  AN  Y   
Sbjct: 239 GLVDAARMQKWHYVSAAVPQLTIHAALSLVPSPSKKVQFISLGAEPVFSQSQANILYSEA 298

Query: 255 NGRTVQ-DKFILSTIRTAYAETI-------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYI 306
           N      D      + +++   I        + ++P+  + +      V       +   
Sbjct: 299 NRLFSHSDFGTTGNVPSSHGSGIEERPRSPAVNKWPMFYIQI----GSVGTIGSDEELPE 354

Query: 307 RFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQ 366
             ++   I + I   I + + +  +      +++           +     Y+ S +   
Sbjct: 355 SDKSLQRILDIIGLMINEFLKEHKLRPRGGRTQRQAFEEEASVCSQAVGKHYSNSSSELS 414

Query: 367 EKLFLQENRLSTNDLLPSDDPT 388
           E+ F   +             +
Sbjct: 415 ERQFKLPSSSRPGPGGHFGAWS 436


>gi|313608848|gb|EFR84633.1| DNA mismatch repair protein MutL [Listeria monocytogenes FSL
          F2-208]
          Length = 70

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 47/66 (71%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I +L++ + N+IAAGE++ERP+  +KEL+EN++DA S+ ++ ++   G +   I DNG G
Sbjct: 5  IVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSG 64

Query: 63 MTSEEI 68
          +  E++
Sbjct: 65 IEEEDV 70


>gi|67473435|ref|XP_652484.1| DNA mismatch repair protein mutL [Entamoeba histolytica HM-1:IMSS]
 gi|56469340|gb|EAL47098.1| DNA mismatch repair protein mutL, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 615

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/540 (12%), Positives = 159/540 (29%), Gaps = 81/540 (15%)

Query: 102 AVSHLTLMSRPPQNNTGAQIAIS----------------GEKISSVRPVAMNPGTIVEVR 145
           ++S  ++M+         +                      K   ++   +N   +V + 
Sbjct: 79  SISRCSIMTSLLSQEYSFRYIYEVCFFNSFQKRLIMKNGRWKKERLKQYQLNNQLVVCLE 138

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
            LF   P R       +   + +   I    I + K+             ++ Q T    
Sbjct: 139 KLFENTPER-------KETFSQLIQDIIGYHIIHYKIGIQIKWNNETYCLLDSQPTMKKC 191

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFIL 265
            E I     ++F       +     +    Y             + + +N   +    + 
Sbjct: 192 YENIFHYQMKEFSTLYSFNSITIYGLR---YLSKDMKWNNTKYHYIIMVNDYLIHHNSLN 248

Query: 266 STIRTAYAETIPLGRY----PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
             I   + +   + +     P   L ++I         HP            +   I   
Sbjct: 249 QLINQIHCKYYGISQSHILTPPFFLQIKIPF------FHPQYPLHFEDENNFLLWIIKFL 302

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNA------------------------------- 350
             + +++  +    +      S     +                                
Sbjct: 303 SNEFLSELLVLPPPITQYPFYSHIQFQHPKSSPPSPKKQRIFALSYSIQGREIKEKETTK 362

Query: 351 -PKTHLPKYATSLTNTQEKLFLQE-------NRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            P+ +  KY  +     ++    +         +  N +   ++  Y     P  +    
Sbjct: 363 IPQINKTKYGMNRHKPSKRRISNKTIYSIAIPYVHYNIISLQENIKYFSHIIPSNKITKD 422

Query: 403 HYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERLIFEK-MRQDFNSTKITSQTLLT 459
             +      Q  + +II   +    L   DQHA HER++FEK  R     T    Q+   
Sbjct: 423 DIKKIQVIGQFGKKFIICLNKRNGLLYGFDQHAVHERILFEKNWRMLEQETSTCLQSFQC 482

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
               ++   +  ++ ++    ++L I       N +  +  P I  K+     + DI+++
Sbjct: 483 SLHKNVNSSQLQVLQKYKYQFNKLNISYSIQ-YNKVYFKSFPIIFGKQLTCSEIMDIVNQ 541

Query: 520 IIDSSTTYTLQ--DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
           I   +    ++    I +I+A+ +C  +I     +   E  +L+ ++ +      C HGR
Sbjct: 542 IDICNEFPGIKHLSIIRHIVASQSCRNAIMFNDNLTLEECKKLISQLSECSCPFICAHGR 601


>gi|46109464|ref|XP_381790.1| hypothetical protein FG01614.1 [Gibberella zeae PH-1]
          Length = 845

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 149/444 (33%), Gaps = 67/444 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L + ++++I +   I   +  +  LI NSLDA +S+V   +    +    + DNG
Sbjct: 1   MTIRQLPQDVVDKIKSSVNITSLNGVVCGLIANSLDAGASKVNISV-DYARGNCTVEDNG 59

Query: 61  FGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+T EE        + H TSK           G  G+ L S+   S LT+ S   ++ +
Sbjct: 60  SGVTPEEFKDGGGLGKLHHTSKWPT---RSSLHGKHGDFLASLATFSLLTITSHHERHIS 116

Query: 118 GAQIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNF-------LKSEQ 162
              I +   ++           R V  + GT   +RDLF T+P R+            ++
Sbjct: 117 HNSITVHNSRVLARQLPTPPESRLVNFDHGTRTTIRDLFGTMPVRVKQRAVFSEKFALDK 176

Query: 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN-- 220
             + L   V+  +      ++ +     + R          +   R S+++ +  + +  
Sbjct: 177 EWSKLTRAVVGMLLAWPSSITVSLRHAATQRELRFRPPEKLDITSRTSRILTQAGLADSS 236

Query: 221 ----AVELNEKSNEITLQGYTG----------------IPTFNRGNANQFYVFINGRTVQ 260
                V ++     I+++G                   IP  N    +  Y  IN     
Sbjct: 237 DVDAWVPISASCGPISVKGCICTNPVATRRSQFISLGIIPIINEFGTDVLYEEINRIFGN 296

Query: 261 DKFILSTIRTAYAETI---------------PLGRYPVVVLLLEIDPRQVDVNVHPAKSY 305
             F +      +                    + R+P+  L +     +   N  P +  
Sbjct: 297 SSFGVVDGEEGHRGVSLKLDEFTGRELRSRKGIERWPMFYLKITASSLEGINN--PDQLG 354

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH------QDNAPKTHLPKYA 359
              +  + I + +  +    + K       V  +   S F       +   PK      A
Sbjct: 355 SHGQTLSAILDLLKATCYGFLKKHQFRPRKVQLRPEESLFSTARTLGRSKKPKPSNSSRA 414

Query: 360 TSLTNTQEKLFLQENRLSTNDLLP 383
           +S+ +T     +     S  +   
Sbjct: 415 SSVASTSRSKSVSARVDSPFEGWH 438



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 73/179 (40%), Gaps = 21/179 (11%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEI-------IDLLEGECALIMEHDE 478
           LV++DQHA  ER   E++  ++ +T   +  +L            ++ + E +L+ +H E
Sbjct: 637 LVMLDQHAVDERCQLEELMLEYFTTDPLTNQVLPQIEPLDRPIIFEVPQEEWSLLEQHRE 696

Query: 479 DLHRLGIKAE---RFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTLQDRI 533
                GI  +       + + +  +P  + ++    P+LL +++      S   ++    
Sbjct: 697 YFAAWGITYQTPPSAHRHRVVVNGLPPSIIERCRLEPRLLIELLRTEAWRSVDSSIPLVR 756

Query: 534 ------ENILATM--AC-YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                 +  L +    C  G+I     + + +   L+  + +     QC HGRP+   L
Sbjct: 757 PATAAPDKPLISRFNGCPRGAIMFNDILTTQQCEELIARLSRCAFPFQCAHGRPSMAPL 815


>gi|296827616|ref|XP_002851197.1| DNA mismatch repair protein [Arthroderma otae CBS 113480]
 gi|238838751|gb|EEQ28413.1| DNA mismatch repair protein [Arthroderma otae CBS 113480]
          Length = 978

 Score =  123 bits (309), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 15/164 (9%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
            IR L +++  QI +  ++   +  I ELI+NSLDA +S +  ++    K    + DNG 
Sbjct: 6   PIRALPQEVAGQIRSSSVVTNLNGVILELIKNSLDARASTITVMV-DFQKGTCTVEDNGL 64

Query: 62  GMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G+  +E        + H TSK          +G +G  + S+ +++ +T+ SR       
Sbjct: 65  GIPPDEFHENGGIGKLHHTSKFYT---PSEVYGRKGVFISSLISMALVTITSRNKSFQQT 121

Query: 119 AQIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
             I     K+             +    GT V V DLF  +P R
Sbjct: 122 NSIIFRHSKLISRLCPAPIQHDILHPQHGTRVTVNDLFSNLPVR 165



 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 48/212 (22%)

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNS----TKITSQTLLTPEIIDLLEGECALIME 475
            Q  + LV+VDQHAA ER   E++            + + TL TP    +   E  L+  
Sbjct: 722 QQDEEVLVLVDQHAADERCRVEELFAGLCGLSPLHVVDTVTLPTPINFRISTQEAKLLET 781

Query: 476 HDEDLHRLGIKAERF----GPNAIAIREIPAILSKKN--IPQLLRDII-DEIIDS----- 523
                   G   E      G  ++ +R +P +++++    PQL  D++  EI D      
Sbjct: 782 RSGYFAAWGCLYEVLREAEGNYSLVLRSLPTLIAERCRVEPQLAIDMLRSEIWDQTDISK 841

Query: 524 --------------------------------STTYTLQDRIENILATMACYGSIRSGRK 551
                                               +   ++ +++ + AC  +I    +
Sbjct: 842 ASVKSVLYSAKDTDQGSAKKKCGMNEPCHYWLERIGSCPKKMVDLIISRACRSAIMFNDE 901

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +   E   L+  + K     QC HGRP+ + +
Sbjct: 902 LSIAECQNLVSRLAKCAFPFQCAHGRPSMVPI 933


>gi|326436237|gb|EGD81807.1| hypothetical protein PTSG_11884 [Salpingoeca sp. ATCC 50818]
          Length = 879

 Score =  123 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 91/214 (42%), Gaps = 25/214 (11%)

Query: 395 PVEESEATHYQLGIACAQIHQNYIIS------QTTDGLVIVDQHAAHERLIFEKMRQDFN 448
             +  + T ++      Q+   +I        +    +V++DQHAAHER+  E++  +  
Sbjct: 626 HAQRFDNTAFRDFQVLGQVDNKFIACLFRREQEADSVIVLIDQHAAHERIRLERLEHEHF 685

Query: 449 STKITSQTLLTPE-----IIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP-- 501
                 +     E      + L EG+ +   ++   +   GI   R GP  + +  +P  
Sbjct: 686 RLGSPVRATHVCELDAPWELSLAEGDASAAEQYATAIKAWGIHLVRTGPTCVRVTHLPGA 745

Query: 502 ----------AILSKKNIPQLLRDIIDEIIDS--STTYTLQDRIENILATMACYGSIRSG 549
                      ++++  + +L+ D I  +  +     +++   +++IL T AC+G+I+ G
Sbjct: 746 LVDASGTRQRLLVNQSTVEELIEDEITHVRQNQGRKRWSIPPTLQDILNTRACHGAIKFG 805

Query: 550 RKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            ++   +   +L ++       QC HGRP+   L
Sbjct: 806 DELSIAQCQDILSDLASCKLPFQCAHGRPSIAPL 839



 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 26/276 (9%)

Query: 89  TFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA---MNPGTIVEVR 145
           T+GFRGEAL ++ A+S LT+ +R  +  T     I G  + +           GT V V 
Sbjct: 3   TYGFRGEALAALAAISVLTIETRKAEEPTTLCKIIKGGAVIAKGRAGSELREAGTCVTVT 62

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
           DLF+ +P R    +    + + I   +  +A+  PK++ T +  ++    +N  S   + 
Sbjct: 63  DLFYNLPVRRQ--RLGPADMDRIKHKMGALALMLPKLALTLTDTQTGHKHVNS-SGAVST 119

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFIL 265
                ++ G D   + + LN       ++GY     +     +  +VF+N R V+  F+ 
Sbjct: 120 RGVFGRLFGNDKSRHLISLNHIDAARVVEGYISTGVY--YAPDLQFVFVNKRPVRRCFLH 177

Query: 266 STIRTAYAETI------------------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
             + +    +I                     R+ + VL + +   QVDV   P KS + 
Sbjct: 178 QVVISQLLNSIILAEDPTTTSQGNPFKRKKRNRHAIFVLNIVLPADQVDVTHEPTKSLVS 237

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS 343
           F +   +R  I ++++  + K  +       +  + 
Sbjct: 238 FEDEHAVRELIKRAVRAFLAKHDLLVDPTPYQMTLP 273


>gi|4809339|gb|AAD30184.1|AC006530_6 hypothetical protein [Homo sapiens]
          Length = 391

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 21/185 (11%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 165 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 224

Query: 477 DEDLHRLG--IKAERFGPNAIAIREIPAILSKKNIPQLLR-------DIIDEIIDSSTTY 527
            ++L  LG          + + + ++P    ++   +L R        I++ +  +    
Sbjct: 225 HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVELLQTTGGIQ 284

Query: 528 -TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLS 586
            TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP+ + L  +
Sbjct: 285 GTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRPSMLPL--A 342

Query: 587 DIEKL 591
           DI+ L
Sbjct: 343 DIDHL 347


>gi|194038576|ref|XP_001926322.1| PREDICTED: DNA mismatch repair protein Mlh3-like isoform 2 [Sus
           scrofa]
          Length = 279

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 29/226 (12%)

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-- 450
           +  V  +E            +  + ++    + LV+VDQHAAHER+  E++  D      
Sbjct: 11  STFVAPTEDVRAACTKDLTTMAVDVLLENGGNLLVLVDQHAAHERIRLEQLIADSYEKQQ 70

Query: 451 -------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE--RFGPNAIAIREIP 501
                  K+ S T+  P  I + E +  L+  + ++L  LG++          + + ++P
Sbjct: 71  AQGSGRKKLLSSTVNPPLEIPVTEEQRRLLRCYHKNLEDLGLEIIFPDTSDRLVLVGKVP 130

Query: 502 AILSKKN---------------IPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGS 545
               ++                + + +R+ ++ +  +     TL   ++ +LA+ AC+G+
Sbjct: 131 LCFVEREANELRRGRSTVTKSIVEEFIREQVELLQTTGGIQGTLPLTVQKVLASQACHGA 190

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           I+    +   E  RL+  +       QC HGRP+ + L  +D++ L
Sbjct: 191 IKFNDSLSLEESCRLIEALSWCQLPFQCAHGRPSMLPL--ADVDHL 234


>gi|14029392|gb|AAK52671.1| unknown [Magnaporthe grisea]
          Length = 119

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/76 (48%), Positives = 53/76 (69%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ LS+ ++N+IAAGEII  P  A+KELIEN++DA S+ +E +   GG    QITDNG G
Sbjct: 44  IQALSQDVVNKIAAGEIIVAPVHALKELIENAVDAGSTSLEVLCRDGGLKMLQITDNGCG 103

Query: 63  MTSEEIPMAVQRHCTS 78
           +  E++P+  +R  TS
Sbjct: 104 IEKEDLPILCERFTTS 119


>gi|226291503|gb|EEH46931.1| DNA mismatch repair protein [Paracoccidioides brasiliensis Pb18]
          Length = 777

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 111/302 (36%), Gaps = 40/302 (13%)

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNI--HTFGFRGEALPSIGA-VSHLTLMS 110
           + DNG G+   +  +  +R CTSK+   DD  N+   T GFRGEAL S       + + +
Sbjct: 14  VRDNGTGIHPNDRQLVCKRSCTSKLRTVDDLRNVGGSTLGFRGEALASAAEMCGGILVTT 73

Query: 111 RPPQNNTGAQIAISGEKI-SSVRPVAMNPGTIVEVRDLFFTIPA-RLNFLKSEQVETNLI 168
           +  +   GA +      +  S    +   GT V V +    +P  +   LK      + +
Sbjct: 74  KTDEELVGAALKYDRAGLLISCTKSSHPTGTTVRVSEFLKFVPVLKQTALKCASKTISRL 133

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNE-- 226
             ++   A++ P++  +   +          +      + I   +G + ++  V +    
Sbjct: 134 KKMLIAYALSRPEIRLSLQVLGGKNQSPWIYAPKKTISDAIMTAVGPEVVSQCVIVAWPE 193

Query: 227 ----------------KSNEITLQGYTGIP----TFNRGNANQFYVFINGRTVQ-DKFIL 265
                           ++N ++++    +P      ++      YV I+ R +     I 
Sbjct: 194 SQDSEASSSLGHRDDSETNPLSIRLVAVVPGPDADCSKLTRAGQYVSIDRRPMSTSHGIA 253

Query: 266 STIRTAYAETIPLGR----------YPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIR 315
             I   +   +  G            P + + L+      D NV P+K+ + F +  ++ 
Sbjct: 254 KEIVKLFKSYLRSGSLCNGGLTSPVDPFLFIHLQCPLGSYDANVEPSKNDVLFADSKLVM 313

Query: 316 NF 317
           + 
Sbjct: 314 SL 315


>gi|312212199|emb|CBX92283.1| similar to DNA mismatch repair protein (Mlh3) [Leptosphaeria
           maculans]
          Length = 963

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 27/188 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVE--TVIAGGGKSFFQITDNG 60
           I  L + +  Q+ +   I   S  + EL++N+LDA+++R+E     A GG +   + D+G
Sbjct: 35  ILPLPDDVAAQVKSSTAIVSVSHVVLELLKNALDAKATRIEAAVDFARGGCT---VEDDG 91

Query: 61  FGMTSEEIPMAVQRHC----TSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            G+   E      RH     TSK +   +     G  G  L S+ A+S LT+ S   +  
Sbjct: 92  VGIPPIEF-----RHQGGLDTSKYA---AQEAQLGRNGTFLASLAAMSLLTITSHHKEYL 143

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVETN 166
           +   I     K         + + V    GT V VR+LF  +P R    +    ++ E +
Sbjct: 144 SHNSITFHHSKPVERQLPAPANKQVHSKHGTRVTVRNLFGNLPVRVKQRSAALDQKAEQD 203

Query: 167 LITDVIRR 174
            + D ++R
Sbjct: 204 RLWDALKR 211



 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 64/198 (32%)

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQD------------------FNSTKITSQTLLTPE 461
           +Q T+ LV++DQHAA ER+  E + +                    + + +T   L  P 
Sbjct: 754 TQATELLVLIDQHAADERIQVEDLLRGLCTPANNQTPSAGYQSKLGHKSHVTCTHLEKPV 813

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNA--------------IAIREIPAILSKK 507
              + + E      +       GI  +     A              +++  +P  ++++
Sbjct: 814 QYTISQMERTYFTTYASRFATWGILFDLPDNTAPSASLPNKAKLPCLLSVTTLPPAIAER 873

Query: 508 NIPQ------LLRDIIDEIIDSSTTYTL--------------------------QDRIEN 535
                     LLR  + + ++      L                             + +
Sbjct: 874 CKSDPKLLITLLRSTVWKYVEDGHVPDLTPMPSSSSSSSTMDPKTQWPRHLSTCPPGLID 933

Query: 536 ILATMACYGSIRSGRKMQ 553
           +L + AC  +I    ++ 
Sbjct: 934 MLNSRACRSAIMFNDELS 951


>gi|84579161|dbj|BAE73014.1| hypothetical protein [Macaca fascicularis]
          Length = 417

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S TL+ P  I + E +  L+  +
Sbjct: 183 LVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 242

Query: 477 DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            ++L  LG++        + + + ++P    ++                + + +R+ ++ 
Sbjct: 243 HKNLEDLGLELVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQVEL 302

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 303 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIETLSSCQLPFQCAHGRP 362

Query: 579 TFIKLKLSDIEKL 591
           + + L  +DI+ L
Sbjct: 363 SMLPL--ADIDHL 373


>gi|4495121|emb|CAB39214.1| hexB [Streptococcus oralis]
 gi|4495200|emb|CAB39252.1| hexB [Streptococcus pneumoniae]
 gi|4495204|emb|CAB39254.1| hexB [Streptococcus pneumoniae]
 gi|4495208|emb|CAB39256.1| hexB [Streptococcus pneumoniae]
 gi|4495212|emb|CAB39258.1| hexB [Streptococcus pneumoniae]
 gi|4495220|emb|CAB39262.1| hexB [Streptococcus pneumoniae]
 gi|4495224|emb|CAB39264.1| hexB [Streptococcus pneumoniae]
 gi|4495228|emb|CAB39266.1| hexB [Streptococcus pneumoniae]
 gi|4495232|emb|CAB39268.1| hexB [Streptococcus pneumoniae]
 gi|4495236|emb|CAB39270.1| hexB [Streptococcus pneumoniae]
 gi|4495240|emb|CAB39272.1| hexB [Streptococcus pneumoniae]
 gi|4495244|emb|CAB39274.1| hexB [Streptococcus pneumoniae]
          Length = 96

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + 
Sbjct: 1   GHGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASH 60

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
           G ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  GTKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 96


>gi|4495111|emb|CAB39209.1| hexB [Streptococcus mitis]
          Length = 96

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + 
Sbjct: 1   GHGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASH 60

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
           G ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  GTKLVARGGEVEKVIPATSPVGTKVCVEDLFFNTPA 96


>gi|322699342|gb|EFY91104.1| DNA mismatch repair protein [Metarhizium acridum CQMa 102]
          Length = 799

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/422 (15%), Positives = 146/422 (34%), Gaps = 56/422 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR L + ++++I +   I   +  +  L+ NSLDA S++V   +         + DNG
Sbjct: 1   MSIRPLPKDVVDRIKSSSAITSLNQVVCGLLTNSLDACSTKVNISL-DYVLGNCTVQDNG 59

Query: 61  FGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           FG+   E        + H TSK      N +T G  G  + S+  +S LT  S    + +
Sbjct: 60  FGIEPSEFEQDGGLCKLHHTSKTP---PNPNTHGSHGSFIASVATLSLLTATSHHRHHAS 116

Query: 118 --------GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL--------KSE 161
                   G  +A     +   R    + GT + +R+LF ++P R+           + +
Sbjct: 117 QASLSVHNGKVLARHVPALPDQRFELFSHGTRISIRNLFGSMPVRVKQRGLLFSDRVRLD 176

Query: 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVI------GE 215
           +   +L+ DV   +     +VS       + R +   +S N  F  RIS++       G 
Sbjct: 177 REWESLMRDVAGLLLPWPTEVSIFLREANTQREQ-RLRSGNNEFASRISRIFTQSGLAGS 235

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
           +   + V ++     + ++G                + +  + + + F  + +     + 
Sbjct: 236 EDAGSWVPVSASCRRVRIKGAISTNPVA--TRRSQIMSLGIQPIPNSFGTNVLYEEVNKL 293

Query: 276 I-----------------------PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
                                    + R+P+  L + +     D+ +       +  +  
Sbjct: 294 FQGSNFGVVDADEQIGGVQGKPRKGIERWPMFYLEIHLLGNDEDLAMDDVLGDSK-HSLQ 352

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
            I + +       + K  +    +     + +  +     +   K +   +    +  L+
Sbjct: 353 AIIDLLKVVCYGFLKKHFLQPKQIQRIAEVPATVRTRQSISEGQKSSPLPSAAITEPELR 412

Query: 373 EN 374
             
Sbjct: 413 RP 414



 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 79/255 (30%), Gaps = 32/255 (12%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
            Q+ +     S  + + +         +           +      K + QE  +     
Sbjct: 531 PQEWLQNIMRSWKNPVFELTEPRIPSLDQAVPVERPVNANYDGPCSKFYSQEYNVQFESA 590

Query: 382 LPSDDPTYSEDN-DPVEESEATHYQLGIACAQIHQNYIIS--QTTDGLVIVDQHAAHERL 438
             + +   S  +    E       +  +    +H   +    + +  L+++DQHAA ER 
Sbjct: 591 AMALNGRLSRTSLAKAEVIGQVDKKFLLLRLSLHTPNVAQGTEASSTLIMLDQHAADERC 650

Query: 439 IFEKMRQDFNSTKI---TSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA-----ERF 490
             E++   +         ++ L  P + ++   E  L+          GI          
Sbjct: 651 RLEELMSQYFQLNPLRAVTELLEKPIVFEVSAREYELLCRFHSHFRTWGIMYVVGKTSST 710

Query: 491 GPNAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTLQDR---------------- 532
             + I I+ +P  + ++    P+LL D++ +        T+  +                
Sbjct: 711 NEHQIEIKSLPPSILERCRTEPKLLIDLVRKETWKLEDRTIPSQPVYERGNPWVSSFHNC 770

Query: 533 ---IENILATMACYG 544
              I  +L + +C  
Sbjct: 771 PQGILELLHSRSCRS 785


>gi|289665668|ref|ZP_06487249.1| DNA mismatch repair protein [Xanthomonas campestris pv.
          vasculorum NCPPB702]
          Length = 57

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQIT 57
          M IR+L E ++NQIAAGE++ERP+  +KEL+EN+LDA ++RV+  +  GG    +I 
Sbjct: 1  MAIRQLPEILVNQIAAGEVVERPASVVKELVENALDAGATRVDIELEEGGVRLIRIR 57


>gi|154270583|ref|XP_001536146.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409950|gb|EDN05338.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1048

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I+ L  + I Q+ +   I   +  + EL++NSLDA +  V   +    GG     + D+
Sbjct: 7   SIQPLPPEAIAQLTSSIAISHLNGVVLELLKNSLDAGAKTVSINVDFPKGGC---VVEDD 63

Query: 60  GFGMTSEEI---PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ-N 115
           G G+   E        + H +SK +        +G +G  L S+ +++ +T+ SR    +
Sbjct: 64  GHGILPAEFLEGSNLAKLHHSSKFNSQHEV---YGRKGVFLASLVSLALVTITSRHESVS 120

Query: 116 NTGAQIAISGEKISSVRPVAMN-------PGTIVEVRDLFFTIPARLNFL 158
            T   +    + IS + P  +         GT V V DLF  +P R+   
Sbjct: 121 TTNTVMYHHAKAISILMPAPLQHEINSPDHGTRVTVTDLFGNLPVRVKHR 170



 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 62/223 (27%)

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNS-------------TKITSQTLLTPEIIDLLEGE 469
              LV+VDQHAA ER   E++  +                 ++ + +L  P    +   E
Sbjct: 717 QQNLVLVDQHAADERCRVEQLFDELCGTTTATPDSSSFCRGRVNTASLPKPISFQVSPQE 776

Query: 470 CALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKN--IPQLLRDIID-EIID 522
             L+  H       G            + + + ++PA+++++    PQL  D++  EI D
Sbjct: 777 GELLKSHSGYFESWGCYYSLSNSERNYHTVTVDKLPALIAERCRLEPQLAIDLLRGEIWD 836

Query: 523 SST------------------------------------------TYTLQDRIENILATM 540
                                                               I ++L + 
Sbjct: 837 RKDHGRRDETSFSQTLSSGNPEAGNSENSQGEAPPTIARQSWLERISDCPKAIVDLLNSR 896

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           AC  SI     +   E   L+ ++       QC HGRP+ I +
Sbjct: 897 ACRSSIMFNDILSPAECQNLISKLALCAFPFQCAHGRPSMIPI 939


>gi|194038578|ref|XP_001926265.1| PREDICTED: DNA mismatch repair protein Mlh3-like isoform 1 [Sus
           scrofa]
          Length = 244

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S T+  P  I + E +  L+  +
Sbjct: 9   LVLVDQHAAHERIRLEQLIADSYEKQQAQGSGRKKLLSSTVNPPLEIPVTEEQRRLLRCY 68

Query: 477 DEDLHRLGIKAE--RFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            ++L  LG++          + + ++P    ++                + + +R+ ++ 
Sbjct: 69  HKNLEDLGLEIIFPDTSDRLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQVEL 128

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 129 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDSLSLEESCRLIEALSWCQLPFQCAHGRP 188

Query: 579 TFIKLKLSDIEKL 591
           + + L  +D++ L
Sbjct: 189 SMLPL--ADVDHL 199


>gi|332867644|ref|XP_003318712.1| PREDICTED: postmeiotic segregation increased 4-like protein-like,
           partial [Pan troglodytes]
          Length = 185

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG G+  E+      +H TSKI +  D   + TFGFRGEAL S+ A
Sbjct: 2   KLKDYGVDLIEVSGNGCGVEEEKFEGLTLKHHTSKIQEFADVPQVETFGFRGEALSSLCA 61

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKS 160
           +S +T+ +       G ++    + KI    P     GT V V+ LF T+P R   F ++
Sbjct: 62  LSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 121

Query: 161 EQVETNLITDVIRRMAIA 178
            + +         R    
Sbjct: 122 IKKKRACFPFAFCRDCQF 139


>gi|332865552|ref|XP_003318556.1| PREDICTED: postmeiotic segregation increased 4-like protein-like
           [Pan troglodytes]
          Length = 209

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG G+  E+      +H TSKI +  D   + TFGFRGEAL S+ A
Sbjct: 57  KLKDYGVDLIEVSGNGCGVEEEKFEGLTLKHHTSKIQEFADVPQVETFGFRGEALSSLCA 116

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKS 160
           +S +T+ +       G ++    + KI    P     GT V V+ LF T+P R   F ++
Sbjct: 117 LSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 176

Query: 161 EQVETNLITDVIRRMAIA 178
            + +         R    
Sbjct: 177 IKKKRACFPFAFCRDCQF 194


>gi|73963651|ref|XP_868114.1| PREDICTED: similar to DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) isoform 2 [Canis familiaris]
          Length = 391

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 119/290 (41%), Gaps = 28/290 (9%)

Query: 323 QKAINKKGISTSSVLSKKMISSFHQDNAPK--THLPKYATSLTNTQEKLFLQENRLSTND 380
           +  + +   +    + K+ + S   +         P+ A  +++ Q K  +    +  ++
Sbjct: 64  RTMMRQNRDTVDDTVGKESLQSLFSEWENPVFARYPEVAVDVSSGQAKSLV----VKIHN 119

Query: 381 LLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIF 440
           +L     T    +   +  +    +                  + LV+VDQHAAHER+  
Sbjct: 120 VLYPYRFTKEMIHSM-QVLQQVDNKFIACLMSTKTEENGEAGGNLLVLVDQHAAHERVRL 178

Query: 441 EKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA--ER 489
           E++  D             K+ S T+  P  I + E +  L+  + ++L  LG++     
Sbjct: 179 EQLITDSYEKQQPQGSGRKKLLSSTVSPPLKIRVTEEQRRLLRCYHKNLEDLGLEILFPD 238

Query: 490 FGPNAIAIREIPAILSKKNIPQL-------LRDIIDEIIDSSTT-YTLQDRIENILATMA 541
              + + + ++P    ++   +L        R+I++ +  +     TL   ++ +LA+ A
Sbjct: 239 TNDSLVLVGKVPLCFIEREANELRRGRSPVTRNIVELLQTTGGIQRTLPLTVQKVLASQA 298

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           C+G+I+    +   E  RL+  +       QC HGRP+ + L  +DI+ L
Sbjct: 299 CHGAIKFNDGLSREESCRLIEALSWCQLPFQCAHGRPSMLPL--ADIDHL 346


>gi|887372|gb|AAC42005.1| ORF; putative [Homo sapiens]
          Length = 265

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+V QHAAHER   E+   D             K+ S TL+ P  I + E +  L+  +
Sbjct: 31  LVLVXQHAAHERXRLEQXIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWCY 90

Query: 477 DEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            ++L  LG          + + + ++P    ++                + + +R+ ++ 
Sbjct: 91  HKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLEL 150

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGRP
Sbjct: 151 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGRP 210

Query: 579 TFIKLKLSDIEKL 591
           + + L  +DI+ L
Sbjct: 211 SMLPL--ADIDHL 221


>gi|74194034|dbj|BAE36933.1| unnamed protein product [Mus musculus]
          Length = 997

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S T++    I + E +  L+  +
Sbjct: 767 LVLVDQHAAHERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPQLAITVSEEQRRLLRSY 826

Query: 477 DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            + L  LG++        + I + ++P    ++                + +L+R+ ++ 
Sbjct: 827 HKHLEDLGLELLFPDASDSLILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVEL 886

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+   ++   E  RL+  +  +    QC HGRP
Sbjct: 887 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDRLSLEESCRLIEALSLSQLPFQCAHGRP 946

Query: 579 TFIKLKLSDIEKL 591
           + + L  +D++ L
Sbjct: 947 SMLPL--ADLDHL 957


>gi|26325724|dbj|BAC26616.1| unnamed protein product [Mus musculus]
          Length = 934

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 29/193 (15%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNST---------KITSQTLLTPEIIDLLEGECALIMEH 476
           LV+VDQHAAHER+  E++  D             K+ S T++ P  I + E +  L+  +
Sbjct: 704 LVLVDQHAAHERIRLEQLITDSYEKQDPQSAGRKKLLSSTIIPPLAITVSEEQRRLLRSY 763

Query: 477 DEDLHRLGIK--AERFGPNAIAIREIPAILSKKN---------------IPQLLRDIIDE 519
            + L  LG++        + I + ++P    ++                + +L+R+ ++ 
Sbjct: 764 HKHLEDLGLELLFPDASDSLILVGKVPLCFVEREASELRRGRSTVTKSIVEELIREQVEL 823

Query: 520 IIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
           +  +     TL   ++ +LA+ AC+G+I+   ++   E  RL+  +  +    QC HGRP
Sbjct: 824 LQTTGGIQGTLPLTVQKVLASQACHGAIKFNDRLSLEESCRLIEALSLSQLPFQCAHGRP 883

Query: 579 TFIKLKLSDIEKL 591
           + + L  +D++ L
Sbjct: 884 SMLPL--ADLDHL 894


>gi|159108558|ref|XP_001704549.1| Mlh2-like protein [Giardia lamblia ATCC 50803]
 gi|33667828|gb|AAQ24514.1| Mlh2 [Giardia intestinalis]
 gi|157432615|gb|EDO76875.1| Mlh2-like protein [Giardia lamblia ATCC 50803]
          Length = 1474

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 21/241 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I++LS   I ++ + +    P+  +KELIENSLDA ++ V+   +  G     + DNG G
Sbjct: 18  IKRLSPLDIIRLNSLDCANSPADVVKELIENSLDAGATVVKVFYSYYGYREIAVYDNGLG 77

Query: 63  MT--SEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           ++   +   +    +CTSKI   D+  ++ T+GFRG AL  I     L + SR   +   
Sbjct: 78  ISGYDDSFEVIANSNCTSKIRIYDEIFSVRTYGFRGNALMWISLKGELQIFSRGSDDAKV 137

Query: 119 AQIAISGEKISSVRPVAMNPG----------TIVEVRDLFFTI------PARLNFLKSEQ 162
            +       + S+  +               T ++V   F  +       +R     S  
Sbjct: 138 MRAIYVNGGLFSIVSIRTEDEEYVLRSFVGHTTIDVSGRFTIMVVSNFGDSRRETEMSPS 197

Query: 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAV 222
            + + + D ++R AI +    F           +       +  +R+  +  + F +  V
Sbjct: 198 TQRSELEDTVKRYAIPHYDKEFLLY-DTDMNIPILALEKRPSIYDRLFDIRRDIFTSGHV 256

Query: 223 E 223
           E
Sbjct: 257 E 257


>gi|4495216|emb|CAB39260.1| hexB [Streptococcus pneumoniae]
          Length = 96

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 2/96 (2%)

Query: 60  GFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G+G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + 
Sbjct: 1   GYGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASH 60

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
           G ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  GTKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 96


>gi|6900980|emb|CAB71560.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901220|emb|CAB71675.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901359|emb|CAB71741.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901361|emb|CAB71742.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901365|emb|CAB71744.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901367|emb|CAB71745.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901369|emb|CAB71746.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVEGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6901046|emb|CAB71620.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 95

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+T +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGITHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|302652496|ref|XP_003018097.1| DNA mismatch repair protein (Mlh3), putative [Trichophyton
           verrucosum HKI 0517]
 gi|291181704|gb|EFE37452.1| DNA mismatch repair protein (Mlh3), putative [Trichophyton
           verrucosum HKI 0517]
          Length = 1000

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 15/163 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + +  QI +  I+   +  I ELI+NSLDA +S V   +    K    + D+G G
Sbjct: 8   IRMLPQDVAGQIRSSSIVTSLNSVIVELIKNSLDANASAVTVNV-DFQKGTCTVEDDGIG 66

Query: 63  MTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           +   E        + H TSK          +G +G  + S+ +++ +T+ SR        
Sbjct: 67  IPPNEFHENGGLGKLHHTSKFYT---TGQVYGRKGIFISSLISMALVTITSRNISFQETN 123

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
            +     K+             +    GT V V DLF  +P R
Sbjct: 124 SVIFRHSKLISRLCPAPIQHDLLHPQHGTRVAVNDLFSNLPVR 166



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 71/210 (33%), Gaps = 46/210 (21%)

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFNS----TKITSQTLLTPEIIDLLEGECALIME 475
            +  + LV+VDQHAA ER   E++     S      + +  L TP    +   E  L   
Sbjct: 732 REGEEVLVLVDQHAADERCRVEELFAALCSLSPSGNVDTTNLPTPISFRIPAQEARLFEA 791

Query: 476 HDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTL 529
                   G       E  G  ++ +R +P +++++    P+L  D++   I   T  + 
Sbjct: 792 RSGYFSSWGCLYQVLREAEGYYSLVVRGLPTLITERCRVEPRLAIDMLRSEIWDPTEISK 851

Query: 530 QDRIE------------------------------------NILATMACYGSIRSGRKMQ 553
                                                    +++ + +C  +I     + 
Sbjct: 852 PSIRSALEGCGSQGFAEKGFGMTETHHCWLQRIGGCPKKMVDLIVSRSCRSAIMFNDVLS 911

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             E   L+  + K     QC HGRP+ + +
Sbjct: 912 VSECQSLVSRLAKCAFPFQCAHGRPSMVPI 941


>gi|6901357|emb|CAB71740.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++   + + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSILTLLTAVEEASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  + P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEIIPATSPVGTKVCVEDLFFNTPA 95


>gi|6900964|emb|CAB71552.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 95

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGQVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6900978|emb|CAB71559.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901118|emb|CAB71623.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901351|emb|CAB71737.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  + P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEIIPATSPVGTKVCVEDLFFNTPA 95


>gi|56675836|emb|CAB71738.2| DNA mismatch repair protein [Streptococcus sp.]
          Length = 116

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6901040|emb|CAB71617.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901044|emb|CAB71619.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901355|emb|CAB71739.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEKVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6900966|emb|CAB71553.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6900970|emb|CAB71555.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6900972|emb|CAB71556.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6900976|emb|CAB71558.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901034|emb|CAB71614.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901036|emb|CAB71615.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901038|emb|CAB71616.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901114|emb|CAB71621.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901116|emb|CAB71622.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901214|emb|CAB71672.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901216|emb|CAB71673.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901218|emb|CAB71674.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901222|emb|CAB71676.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901246|emb|CAB71678.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901248|emb|CAB71679.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901250|emb|CAB71680.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901252|emb|CAB71681.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901363|emb|CAB71743.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6901244|emb|CAB71677.1| DNA mismatch repair protein [Streptococcus pneumoniae]
          Length = 95

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVVPATSPVGTKVCVEDLFFNTPA 95


>gi|6900982|emb|CAB71561.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 95

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVEGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATNPVGTKVCVEDLFFNTPA 95


>gi|171466331|gb|ACB46382.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSKI    D  +I +FGFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIETFSDIYSIQSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVTVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++S +   +L  +++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|6900988|emb|CAB71564.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 95

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAMDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6901210|emb|CAB71670.1| DNA mismatch repair protein [Streptococcus pneumoniae]
          Length = 95

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAMDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P   + GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSSVGTKVCVEDLFFNTPA 95


>gi|171466313|gb|ACB46375.1| Mlh1 [Giardia intestinalis]
 gi|171466321|gb|ACB46378.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSKI    D  +I +FGFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIETFSDIYSIQSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++S +   +L  +++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|330886598|gb|EGH20259.1| DNA mismatch repair protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 75

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 51/73 (69%)

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFI 581
           +  T+  +Q  +  +L TMAC+G+IR+ R++   EMN LLR+ME    S QCNHGRPT+ 
Sbjct: 1   EYGTSDRVQAHMNELLGTMACHGAIRANRRLAIPEMNGLLRDMENTERSGQCNHGRPTWT 60

Query: 582 KLKLSDIEKLFGR 594
           ++ L+D++KLF R
Sbjct: 61  QMGLNDLDKLFLR 73


>gi|6900968|emb|CAB71554.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 95

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATNPVGTKVCVEDLFFNTPA 95


>gi|6900974|emb|CAB71557.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 95

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVVPATNPVGTKVCVEDLFFNTPA 95


>gi|6901349|emb|CAB71736.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDSASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  + P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEIIPATSPVGTKVCVEDLFFNTPA 95


>gi|6901120|emb|CAB71624.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 95

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLIARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|332867653|ref|XP_003318715.1| PREDICTED: postmeiotic segregation increased 4-like protein-like
           [Pan troglodytes]
          Length = 247

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG+G+  E+      +H TSKI +  D   + TFGFRGEAL S+ A
Sbjct: 64  KLKDYGVDLIEVSGNGYGVEEEKFEGLTLKHHTSKIQEFADVPQVETFGFRGEALSSLCA 123

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKS 160
           +S +T+ +       G ++    + KI    P     GT V V+ LF T+P R   F ++
Sbjct: 124 LSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 183

Query: 161 EQVETNLITDVIRRMAIA 178
            + +         R    
Sbjct: 184 IKKKRACFPFAFCRDCQF 201


>gi|332862599|ref|XP_003317948.1| PREDICTED: postmeiotic segregation increased 4-like protein-like,
           partial [Pan troglodytes]
          Length = 209

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG+G+  E+      +H TSKI +  D   + TFGFRGEAL S+ A
Sbjct: 57  KLKDYGVDLIEVSGNGYGVEEEKFEGLTLKHHTSKIQEFADVPQVETFGFRGEALSSLCA 116

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKS 160
           +S +T+ +       G ++    + KI    P     GT V V+ LF T+P R   F ++
Sbjct: 117 LSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 176

Query: 161 EQVETNLITDVIRRMAIA 178
            + +         R    
Sbjct: 177 IKKKRACFPFAFCRDCQF 194


>gi|171466317|gb|ACB46377.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSKI    D  +I +FGFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIETFSDIYSIQSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVAVYIDGKLHFGPKTLTSEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++S +   +L   ++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QKLLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|266618994|ref|ZP_06111929.1| hypothetical protein CBB_2035 [Clostridium botulinum Bf]
 gi|263529158|gb|EEZ28464.1| hypothetical protein CBB_2035 [Clostridium botulinum Bf]
          Length = 68

 Score =  117 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          KI  L  +  N+IAAGE+IERP   +KEL+ENS+DA +  +   I  GG+   +I D+G
Sbjct: 3  KINLLDLETTNKIAAGEVIERPFSVVKELVENSIDAGAKNITIEIEDGGQKLIKIIDDG 61


>gi|119501232|ref|XP_001267373.1| DNA mismatch repair protein (Mlh3), putative [Neosartorya fischeri
           NRRL 181]
 gi|119415538|gb|EAW25476.1| DNA mismatch repair protein (Mlh3), putative [Neosartorya fischeri
           NRRL 181]
          Length = 926

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 79/533 (14%), Positives = 163/533 (30%), Gaps = 76/533 (14%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           +I  LS +++ +I +   I   +  + EL++N+LDA +  V   +    GG     + D+
Sbjct: 7   RIEPLSPEVVAKIKSSTSITDLNRVVVELVKNALDANAHTVSVTVDFHRGGC---VVEDD 63

Query: 60  GFGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK++        +G RG  L S+ ++S LT++S   ++N
Sbjct: 64  GDGIPPAEFESDGGLGKAHHTSKLNS---ARAVYGRRGLFLASLASLSLLTVISHHVRHN 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +   +               SS    + + GT V V DLF  +P R         +  E 
Sbjct: 121 STNSVIFHHSTPIARLIPAPSSHHLSSSSHGTRVTVNDLFGNMPVRVKSRALALQKPDEF 180

Query: 166 NLITDVIRR------MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN 219
               D +RR      +A  +       +  K  +  +   +        +        + 
Sbjct: 181 ERQWDDLRRLLVSLILASDHLTKLVVSTAGKERKLMIRSHAGRQEIRGDLDIKRITSILT 240

Query: 220 NAVELNEKSNEITLQGYTGIPTFNRGNA---------------------------NQFYV 252
            A  +   ++         +P  +   A                           +  Y 
Sbjct: 241 QAGLIESPNSGSWNSVSASVPGISLRAAVSLVPSPTRKVQFISIGIDPVYPRNSTDLLYS 300

Query: 253 FINGRTVQDKFILSTIRTAYAETIP--------LGRYPVVVLLLEIDPRQVDVNVHPAKS 304
            IN       F         ++  P        + ++P+  + +++D             
Sbjct: 301 EINRLFALSDFGAVEAAPVSSDGNPGPNFTSKAVNKWPMFYICIDVDDPTELYQED---H 357

Query: 305 YIRFRNPTIIRNFI---IQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
            +   +   ++  I      I + + + G+   +    K  S F    +P      +A S
Sbjct: 358 EVVPESNQSVQRLIDVLAAMISEFLKQHGLRPRAGRQTKGASRFASVESPGAGRSNFAKS 417

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
           +++       +E       L     PT +                     +        +
Sbjct: 418 VSSQDRSSIAEEALAGQLKLPTFQRPTSTNTTSDFATWSRVKCAREPPAGKH-------E 470

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
             DG        A E    E +     +   ++   L     D  + + ++  
Sbjct: 471 LADGWKKAHSRPASEYRDRESLSLCLETDDSSAGNNLEITENDGSDADASIPW 523



 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 50/224 (22%)

Query: 410 CAQIHQNYIISQTTDG------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT--PE 461
            AQ+ + +I+++  DG      LV++DQHAA ER   E +  D  +        +   P 
Sbjct: 659 IAQVDRKFILAKLADGHSSRSVLVLIDQHAADERCRIESLFGDMFADGHRQVQTIRIDPI 718

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAERFGPNA-----IAIREIPAILSKKN--IPQLLR 514
             ++   E  L  +H +     G+       ++     + +  +PA+++++    P L+ 
Sbjct: 719 TFEIPLMEATLFGKHADSFASWGVGYAVERKSSARAALVVVHSLPALIAERCRLEPDLVS 778

Query: 515 DII-----------------------------DEIIDSSTTYTLQDR------IENILAT 539
           D+I                             DE+   +    ++        I ++L +
Sbjct: 779 DLIRGEIWKHEENGRGALALSDQRTQRSKIHRDELGVETEDNWVERLKSCPQGIIDLLNS 838

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            AC  +I     + + E   L+  + +     QC HGRP+ + +
Sbjct: 839 RACRTAIMFNDMLTAEECKSLIGRLARCVLPFQCAHGRPSMVPI 882


>gi|6901254|emb|CAB71682.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901371|emb|CAB71747.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 95

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G 
Sbjct: 2   GIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGT 61

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
           ++   G ++  V P     GT V V DLFF  PA
Sbjct: 62  KLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|6901212|emb|CAB71671.1| DNA mismatch repair protein [Streptococcus pneumoniae]
          Length = 95

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 62  GMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G 
Sbjct: 2   GIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHGT 61

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
           ++   G ++  V P     GT V V DLFF  PA
Sbjct: 62  KLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|242765929|ref|XP_002341073.1| DNA mismatch repair protein (Mlh3), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724269|gb|EED23686.1| DNA mismatch repair protein (Mlh3), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 943

 Score =  117 bits (293), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 19/171 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESS--RVETVIAGGGKSFFQITDN 59
            I  L  ++  ++ +   I   +  + EL++N+LDA +    +      GG     + D+
Sbjct: 7   PILPLPPEVAKKVQSSLKITNLNAVVVELVKNALDAGAGSLSIVVDYKRGGC---IVEDD 63

Query: 60  GFGMTSEEI---PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G+G+ +EE        + H TSK      ++++   RG+ L ++  +S LT+ SR   ++
Sbjct: 64  GYGLPAEEFMDGAGLCRPHHTSKAGR--QSVYSC--RGQFLAALATMSLLTISSRHRGHS 119

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
               +     K+        + + V    GT V V +LF  +P R+    S
Sbjct: 120 ETNTVIFHESKVISRLVPAPTHQEVRGAQGTRVTVNNLFSNMPVRVKHRAS 170



 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 103/315 (32%), Gaps = 49/315 (15%)

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I +S    +  +     ++++    S F     P   +     S  ++Q     +    S
Sbjct: 585 IRRSQTAPVQGQSAWFENLVNNWSNSVFSCPKKPIMSIEAENASDNSSQCNDAQRGPIQS 644

Query: 378 TNDLL------PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
            N          +   +    +     ++     + +      +++    +   LV+VDQ
Sbjct: 645 WNPAEALGADGHTGKVSREGLSRAAIIAQVDCKFILVRMVPAREHHSDETSNQILVLVDQ 704

Query: 432 HAAHERLIFEKMRQDFNSTK-------ITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
           HAA ER   E +  D  + +       I +Q+  TP    + + E + +  +       G
Sbjct: 705 HAADERRRLEDLLSDMFTVEEQSGVISIRTQSFQTPIQCPIQDDEVSSLAAYSRYFESWG 764

Query: 485 IKAERFGP-------NAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTLQDRIE- 534
              +           + + I  +P I++++    P+L   ++ + I S     +      
Sbjct: 765 CHYKMLQELIHGRRRHLVVIEALPLIIAERCRLEPKLFIQLLRKEIWSRAGEKIPPLRRC 824

Query: 535 --------------------------NILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
                                     +++ + AC  SI     +   E   L+  + K  
Sbjct: 825 VASTTEPENGPFPWLRWIAGCPEGMLDLINSRACRSSIMFNDPLSIDECQSLISRLSKCA 884

Query: 569 NSSQCNHGRPTFIKL 583
              QC HGRPT I +
Sbjct: 885 FPFQCAHGRPTMIPI 899


>gi|308162663|gb|EFO65047.1| Mlh2-like protein [Giardia lamblia P15]
          Length = 1474

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 27/245 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +IR+LS   I ++ + +    P+  +KELIENSLDA ++ V+   +  G     + DNG 
Sbjct: 17  RIRRLSPLDIIRLNSLDCANSPADVVKELIENSLDAGATVVKVFYSYYGYREIAVYDNGS 76

Query: 62  GMT-SEE-IPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           G++  ++   +    +CTSKI   D+  +  T+GFRG AL  I     L + SR  ++  
Sbjct: 77  GISNRDDSFEVIANSNCTSKIRIYDEIFSARTYGFRGNALMWISLKGELQIFSRGSEDAQ 136

Query: 118 GAQIAISGEKISSVRPVAMN-------------------PGTIVEVRDLFFTIPARLNFL 158
             +       + S+  +                        TI+ V +   ++     F 
Sbjct: 137 VMRAIYVNGGLFSIVSIRTEDEEYVLRSFVGHTNIDVSGRFTIMVVSNFGDSLHEIEMFP 196

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
            +++ E     D ++R AI +    F           +       +  +R+  V  + F 
Sbjct: 197 SAQRSELE---DTVKRYAIPHYDKEFLLY-DTDMNIPILTLEERPSIYDRLFDVRRDIFT 252

Query: 219 NNAVE 223
           +  VE
Sbjct: 253 SGYVE 257


>gi|71277427|gb|AAZ29878.1| non-ribosomal peptide synthetase modules and related protein
           [Pseudomonas aeruginosa]
          Length = 169

 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/168 (27%), Positives = 83/168 (49%)

Query: 168 ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
           I +V+RR+A+A   V+ T         +         +  R+  + G  F+ +A+ ++ +
Sbjct: 1   IDEVVRRIALARFDVAITLHHNGKLIRQYRAAPDESQYERRLGNICGATFLQHALAVSWQ 60

Query: 228 SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLL 287
             ++T+ G+   P   +   +  Y ++N R ++D+ I   IR AY + +   + P  VL 
Sbjct: 61  HGDLTIHGWVADPVGAKQLPDMQYCYVNQRMMRDRLINHAIRQAYQDQLSDDQQPAYVLY 120

Query: 288 LEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           LEIDP QVDVNVHP K  +RF    ++ +FI Q++     +      S
Sbjct: 121 LEIDPHQVDVNVHPTKHEVRFHQARLVHDFIYQAVMSVWQQASAPVES 168


>gi|6901042|emb|CAB71618.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 95

 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  D   I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADLFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V   DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCAEDLFFNTPA 95


>gi|320594203|gb|EFX06606.1| vacuolar protein sorting protein [Grosmannia clavigera kw1407]
          Length = 1565

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 145/431 (33%), Gaps = 67/431 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L   ++ QI A  I+   +  +  L+ N+LDA +S V   +         + D+G
Sbjct: 1   MAIQRLPGDVVVQIEASLIVTSLNGTVCGLLCNALDAGASNVNISV-HYSHGSCVVEDDG 59

Query: 61  FGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+            Q H TSK      +I   G  G  L S+ ++S L+++SR     +
Sbjct: 60  IGIPPPAFRPDGGLGQLHHTSKHP---RSICLHGRHGSFLASVASLSLLSVVSRCRGRAS 116

Query: 118 --------GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLI 168
                      +                 GT V V DLF  +P RL+    S     +  
Sbjct: 117 PSALTMHNATVLRRHVPAPPEQHACPAPHGTRVAVHDLFGCMPVRLHLRPASAFAAWSRD 176

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI------------------- 209
            D + R   A   +   +      R +    + +G  P                      
Sbjct: 177 WDELVRSVTA---LLLAWPHDLVVRLRAESGTGHGRLPAVTLRAAAPPAAEHPAIARTTT 233

Query: 210 ----SQVIGEDFINNAVELNEKSNEITLQGYTGI----------------PTFNRGNANQ 249
               + +       + V +      IT+ G   +                P   R +A+ 
Sbjct: 234 LLAQAGLCDTASAASWVRVGSSIPGITVSGCVCLTPSASKRVQFIRIGVEPLSERHHADL 293

Query: 250 FYVFINGRTVQD-KFILSTIRTAYAETIPLGRYPVVVLLLEID---PRQVDVNVHPAKSY 305
            Y  IN         +++ ++   A    + R+P+ ++ +++    P +VD  +   +  
Sbjct: 294 LYDEINKLFADSLFALVAAVQRPTAARRGVDRWPMFIIGIDLTESAPVEVDDVLDDRR-- 351

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
              ++  ++R+ +   I + + K  +   + L  +  SS    +       K  T+    
Sbjct: 352 ---QHLALVRSLLRTMIVQFLKKHNLYRRTTLLCEDTSSVGSPSITGPPAKKRKTTRMLQ 408

Query: 366 QEKLFLQENRL 376
           +   F    ++
Sbjct: 409 RHSPFRSWPKV 419


>gi|6900984|emb|CAB71562.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6900986|emb|CAB71563.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 95

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 2/95 (2%)

Query: 61  FGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
            G+  +E+ +A++RH TSKI +  DF  I T GFRGEALPSI +VS LTL++     + G
Sbjct: 1   HGIAHDEVELALRRHATSKIKNQADFFRIRTLGFRGEALPSIASVSVLTLLTAVDGASHG 60

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
            ++   G ++  V P     GT V V DLFF  PA
Sbjct: 61  TKLVARGGEVEEVIPATSPVGTKVCVEDLFFNTPA 95


>gi|325091282|gb|EGC44592.1| DNA binding protein [Ajellomyces capsulatus H88]
          Length = 736

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 2  KIRK-LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          KI+K L   +IN+IAAGEII  P  A+KELIENS+DA ++ VE ++  GG    QITDNG
Sbjct: 32 KIQKALDPDVINKIAAGEIIVAPMHALKELIENSVDAGATSVEILVKDGGLKLLQITDNG 91

Query: 61 FGMTSEEI 68
           G+  E++
Sbjct: 92 HGIDVEDL 99



 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 6/260 (2%)

Query: 142 VEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQST 201
           ++V DLF+ +P R    +S   E   I DV+ R A+    V+F+      +   ++  + 
Sbjct: 94  IDVEDLFYNVPTRRRAFRSSSEEYAKILDVVGRYAVHCSGVAFSCKKHGDSGVSISTSTN 153

Query: 202 NGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQFYVFINGRTV 259
           +    +RI Q+ G    +  ++ +           G+     ++        +FIN R+V
Sbjct: 154 STTV-DRIRQIHGSAVASELIDFSVDDPRLGFRASGWASNANYH-AKRTTVLLFINHRSV 211

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
           +   +   I  AY+  +P G +P   L LEI+P++VDVNVHP K  + F N   I   I 
Sbjct: 212 ESSAVRRAIEQAYSNFLPKGGHPFAYLDLEIEPQRVDVNVHPTKREVNFLNEDEIIGSIC 271

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
            +IQ+ +      +S     + +    +  +   +                L   +    
Sbjct: 272 TTIQQKLATVD--SSRTFMVQTLLPVGRTQSASVNSNAEPPFDDRQPTPRTLSGTKRPYE 329

Query: 380 DLLPSDDPTYSEDNDPVEES 399
           + L   D +  +    +  +
Sbjct: 330 NNLVRTDASMRKITSMLPPA 349


>gi|253747793|gb|EET02300.1| Mlh2-like protein [Giardia intestinalis ATCC 50581]
          Length = 1473

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 27/244 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR+LS   I ++ + +    P+  +KELIENSLDA ++ V+   +  G     + DNG G
Sbjct: 18  IRRLSPLDIIRLNSLDCANSPADVVKELIENSLDAGATSVKVFYSYYGYREITVYDNGSG 77

Query: 63  MT-SEE-IPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           ++  ++   +    +CTSKI   D+  ++ T+GFRG AL  I     L + SR  +    
Sbjct: 78  ISGRDDSFEVIANSNCTSKIRVYDEIFSVQTYGFRGNALMWISLKGELQIFSRGSKGAEV 137

Query: 119 AQIAISGEKISSVRPVAMN-------------------PGTIVEVRDLFFTIPARLNFLK 159
            +       + S+ P+                        TI+ V +L  +         
Sbjct: 138 LRAIYVNGGLFSIVPIRAEDEEYVLRSFVGHTNIDVSGRFTIIVVSNLGDSFHEYEVSPS 197

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFIN 219
           +++ E     D I+R +I +    F           +       +  +R+  V  + F +
Sbjct: 198 AQRSELE---DTIKRYSIPHYDKEFILY-DTDLNIPILTLEKRLSVYDRLFDVRRDIFAS 253

Query: 220 NAVE 223
             VE
Sbjct: 254 THVE 257


>gi|171466329|gb|ACB46381.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSKI    D  +I +FGFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIETFSDIYSILSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++SR         + I                   V  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSRTKNQPAYVAVYIDGKLHFDPKTLTSEHTDFFVSTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++  +   +L  +++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRGSKTSLDL-QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|332867728|ref|XP_003318725.1| PREDICTED: putative postmeiotic segregation increased 2-like
          protein 11-like [Pan troglodytes]
          Length = 130

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 41/67 (61%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 22 IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 81

Query: 63 MTSEEIP 69
          +  E + 
Sbjct: 82 VEEENLE 88


>gi|171466325|gb|ACB46379.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSK+    D  +I +FGFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKVETFSDIYSIQSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++S +   +L  +++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|115398315|ref|XP_001214749.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114192940|gb|EAU34640.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 862

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 113/296 (38%), Gaps = 46/296 (15%)

Query: 331 ISTSSVLSKKMISSFHQDNAPKTHLPKYATS------LTNTQEKLFLQENRLSTNDLLPS 384
               S +S    +++ Q+   +   P ++ +        + Q          ++ DL   
Sbjct: 541 HRPRSAVSNTAHNAWVQNVLSRWGNPVFSRAEQPISVFDSGQTNPAEGRPGSTSGDLCGF 600

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG------LVIVDQHAAHERL 438
           +D   S   + +              AQI Q +I+++          LV++DQHAA ER 
Sbjct: 601 EDFGLSRFREKLH---RQDLDTAEVIAQIDQKFILARLRPSSPSEFVLVLIDQHAADERC 657

Query: 439 IFEKMRQDF---NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG--IKAERFGPN 493
             E++  +F   + +       + P ++++ + E +L   + E     G     E+   +
Sbjct: 658 RVERLFGEFFADDRSGRVQTITVDPIVLEVAKNEASLFERYREFFKCWGVEFTLEQGADD 717

Query: 494 ---AIAIREIPAILSKKN--IPQLLRDIID--------------EIIDSSTTYTLQDRIE 534
              AI +  +P++++++    P L+ D+I               E   S        R+ 
Sbjct: 718 RSAAIVVSTLPSLIAERCRVEPNLITDLIRGEIWTREETGRGPFEAATSGEGLNWATRMN 777

Query: 535 -------NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                  ++L + AC  +I     +   E  RL+ ++ +     QC HGRP+ I +
Sbjct: 778 GCPKGIVDLLNSRACRTAIMFNDALAVDECQRLVMQLARCLFPFQCAHGRPSMIPI 833



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/439 (13%), Positives = 138/439 (31%), Gaps = 61/439 (13%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           +I  L   +I ++ +   I + +  + EL++N+LDA +  +   +    GG     + D+
Sbjct: 7   RIEPLPPDVIAKLKSSTSITQLNGVVVELVKNALDANAHTIYVTVDFPRGGC---VVEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+  EE        + H +SK+    +    +G +G  L S+ ++S LT+ S   + +
Sbjct: 64  GAGIPREEFEPGGGLGRAHHSSKLH---AGKAVYGRKGLFLASLSSLSLLTITSHHIRQS 120

Query: 117 TGAQIAISG--------EKISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +   I                         GT V V DLF  +P R    +    +  E 
Sbjct: 121 STNAIIFHRAAPVARLTPAPVQQELRFRAHGTSVTVNDLFGNMPVRVKSRSLALQKPDEL 180

Query: 166 NLITDVIRR----MAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE-------------- 207
           +   + ++     + IA   ++    +      ++N                        
Sbjct: 181 DRQWEELKHLIVSVMIANDGLTKLVLSDARKERRLNLSPRPSRLWRDGELDVRRFASILT 240

Query: 208 -----RISQVIGEDFINNAVELNEKSNEITLQG-------YTG---IPTFNRGNANQFYV 252
                 +      D ++  V        I L         +      P + R NAN  Y 
Sbjct: 241 QAGLVDVQSPDQWDTVSACVPDLSIHAAICLSPSPTKKVQFISIGINPVYPRNNANLLYN 300

Query: 253 FINGRTVQDKFILSTIRTAYAETIPL----GRYPVVVLLLEIDPRQVDVNVHPAKSYIRF 308
            IN       F              +     R+P+  + +++   ++  +          
Sbjct: 301 EINRLFASSDFGTGAANNPNPGGTSMAKNVNRWPMFYIRIDMGGTEIKDSDEEFP--ESD 358

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           ++   I + +   + + + +  +   +   ++       +  P +          ++ E+
Sbjct: 359 KSIQRILDVLGAMVSEFLAQHHLRPRAGKRRQGPRKQDPNTLPASETTSRRLDYASSTEE 418

Query: 369 LFLQENRLSTNDLLPSDDP 387
               + ++           
Sbjct: 419 ALGDQVKMPAFQRSSQSQY 437


>gi|290983030|ref|XP_002674232.1| predicted protein [Naegleria gruberi]
 gi|284087821|gb|EFC41488.1| predicted protein [Naegleria gruberi]
          Length = 447

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/456 (14%), Positives = 158/456 (34%), Gaps = 29/456 (6%)

Query: 143 EVRDLFFTIPARLNFLKSEQVETNL-ITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQST 201
            V  +F   P R   L+    +    I D I   +     +         + + ++    
Sbjct: 1   MVEGIFSNYPVRKKQLEEHPDQYLRSIVDFIEVESFKLVDIQIALVCDGMSIFDLSNSEK 60

Query: 202 NGNFPERISQVIGEDFINNAVE--LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
                +RI +   E      +    + K  E+ + G                V +N R  
Sbjct: 61  EQALHQRIRKRYEELTRRRNLFPIEDIKFGELQVSGIVDKNDITSKIK---IVIVNNRVY 117

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
                   I T   +    G + +   +L+  P   ++     ++ + +       + I 
Sbjct: 118 -------PIETLIKKGEEFGSFVLCASILKAPPHNSEMINSELRNALFYSKLHNESSTIQ 170

Query: 320 QSIQKAINKKGIST-SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
              +++  +K  +  SS L  KM +    +N  K         +  ++E   ++      
Sbjct: 171 IYNEESEQRKEFAPLSSSLYDKMYNRKPSENKIKGDRLNINQLINKSKEINGIKTIPKPQ 230

Query: 379 NDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL 438
              + S       +    +        +     +     + ++ +  L+ +DQHAA ER+
Sbjct: 231 PKFMSSPKKKKLLNISLDKNQMKQLKFINQWEKKFILTSLKTENSLLLIAIDQHAADERV 290

Query: 439 IFEKMRQ----DFNSTKITSQTLLTPEIIDLLE----GECALIMEHDEDLHRLGIKAERF 490
             E ++Q        +       L+ + ++  +       +L+ ++ + L +        
Sbjct: 291 RMEMIQQNILDYAQQSPGPWVQPLSKQTLNSTKVEGSKTISLLKQNKDKLSKWYWNFIII 350

Query: 491 GPNA----IAIREIPAILSKKNIPQL-LRDIIDEI--IDSSTTYTLQDRIENILATMACY 543
              +    + +  IP +  +K+  +L    ++  +  ++  +T     R+  ++ + AC 
Sbjct: 351 HEESTNAFLKLNTIPCLFVEKDSIELGFESMMSFLSELEFDSTCWYPKRVLELIQSKACR 410

Query: 544 GSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT 579
           G+I  G  + + + N+LL+++       QC HGRP+
Sbjct: 411 GAIMFGDVLSTEKCNQLLQQLSNCQLPFQCAHGRPS 446


>gi|315056807|ref|XP_003177778.1| hypothetical protein MGYG_01841 [Arthroderma gypseum CBS 118893]
 gi|311339624|gb|EFQ98826.1| hypothetical protein MGYG_01841 [Arthroderma gypseum CBS 118893]
          Length = 992

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + +  Q+ +  I+   +  I EL++NSLDA++S V   I    K    + D+G G
Sbjct: 8   IRVLPQDVARQMTSSSIVTNLNGVIVELVKNSLDADASTVTINI-DFQKGTCTVEDDGIG 66

Query: 63  MTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           +   E        + H TSK     +    +G +G  + S+ +++ +T+ SR        
Sbjct: 67  IPPNEFHESGGLGKLHHTSKFY---AAGQIYGRKGIFISSLISMALVTITSRNSSFQETN 123

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
            I     K+             +    GT V V DLF  +P R
Sbjct: 124 SIIFRHSKLISRLCPAPIQHDLLHPQHGTRVTVNDLFGNLPVR 166



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 98/298 (32%), Gaps = 52/298 (17%)

Query: 338 SKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ----ENRLSTNDLLPSDDPTYSEDN 393
            K       + + P       +T   ++   L       ++    N L+   D + S  N
Sbjct: 638 WKNPTFPLPEPSIPSITSQIRSTDKWSSPAALGSHCLGCDDPQGINTLIGLTDKSDSRLN 697

Query: 394 DPVEESEATHYQLGIACAQIHQNYII--SQTTDGLVIVDQHAAHERLIFEKMRQDFN--- 448
               E      Q+      +  + +    +  + LV+VDQHAA ER   E++        
Sbjct: 698 KCALEKAKVIAQVDQKFILLRTSLLCKGREGEEVLVLVDQHAADERCRVEELFAALCGLS 757

Query: 449 -STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERF----GPNAIAIREIPAI 503
            S  + +    TP    +   E  L           G   +      G  ++ ++ +P +
Sbjct: 758 PSDNVETTIFPTPISFRIPAQEAKLFETRSGYFSSWGCLYDVLRKSEGYYSLVVKGLPTL 817

Query: 504 LSKKN--IPQLLRDIIDE---------------IIDSSTTY------------------- 527
           ++++    P+L  D++                 +++ S +                    
Sbjct: 818 IAERCRTEPRLAIDMLRSEIWDQTATTKTLIGSVLEESNSQGFAGKPPGMTEAHRYWLQR 877

Query: 528 --TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                 ++ +++ + +C  +I     +   E   L+  + K     QC HGRP+ + +
Sbjct: 878 IGCCPKKMVDLIVSRSCRSAIMFNDVLSISECQNLVSRLAKCAFPFQCAHGRPSMVPI 935


>gi|123448722|ref|XP_001313087.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894958|gb|EAY00158.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 582

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 119/323 (36%), Gaps = 16/323 (4%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF-SNIHTFGFRGEALPSI 100
           +   +  GG +   ++DNG G+  E        + TSK +++      TFGF G +L SI
Sbjct: 2   INISLINGGYTNIIVSDNGCGIPRENFSKLCHFNATSKYNEESPDKYDTFGFHGASLASI 61

Query: 101 -GAVSHLTLMSRPPQNNTGAQIAISGEK-ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
             +   L + SR      G +   +    +  ++      GT +E+ +L  ++   +   
Sbjct: 62  TCSCPTL-ITSRTRAEKIGTKGQFNYSTLVGDLQNAQCQYGTTIELNNLSDSVDQAVTKN 120

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQS-TNGNFPERISQVIG-ED 216
                    I  +++  +  Y  +SF           + ++S T  N  + +  +   ++
Sbjct: 121 IQNSQSNLTIKKLVQSYSALYYNISF------KLLTTLPYESMTKKNLIQSLRAIYNIQN 174

Query: 217 FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI 276
              + +    + N +    +  +P            F+NG+ +++K +  ++++ Y  + 
Sbjct: 175 TPMHPISRTFECNNVKAALFVTLPEATSIYPQFV-FFLNGQRIKNKALKKSVKSVYQRSG 233

Query: 277 PLGRYPVVVLLLEIDPR--QVDVNV-HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIST 333
            +    V +L  E  P+   +  N   P +  +     T++   I    +    +     
Sbjct: 234 NIHTPVVFILFSEETPQFKFIPTNYPFPNQIRMSGELETMVEEAISIIRKDGDGEIDFDI 293

Query: 334 SSVLSKKMISSFHQDNAPKTHLP 356
           +       I  +  +  P+   P
Sbjct: 294 NEYRKGNKIPRYPIEIQPEMQNP 316


>gi|149239680|ref|XP_001525716.1| hypothetical protein LELG_03644 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451209|gb|EDK45465.1| hypothetical protein LELG_03644 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 702

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 426 LVIVDQHAAHERLIFEKMRQDF--NSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
           LV++DQHA+ ER+  EK+ ++F    +      L  P IIDL   E   + ++  +    
Sbjct: 517 LVVLDQHASDERVKIEKLIKEFVDEMSANPGLRLCQPLIIDLHPHELQYLHQYASNFQLF 576

Query: 484 GIKAERFGPNAIAIREIPAIL--SKKNIPQLLRDII---------------DEIIDSST- 525
           GI+        +A+ ++P +L     N  + ++D++                 I D    
Sbjct: 577 GIEYIIIDQIKLAVTKLPKVLITKVGNNTKYMKDMLLQHSFDVNNKVKNQYFNIKDEDWF 636

Query: 526 --TYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             ++ +   I ++L + AC  +I  G  +   EM+ L++E+ +     QC HGRP+ + L
Sbjct: 637 AISHNIPRAIIDLLNSKACRSAIMFGDPLTFTEMSSLIQELSRCKLPFQCAHGRPSVVPL 696



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 96/299 (32%), Gaps = 54/299 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           ++ +L++ +INQI +          I+ L+++SL      +   +     S   + D+G 
Sbjct: 3   RLERLNDDVINQIKSHLRFNTIDSIIEHLLKDSLQRSPKNIIVKVYLDSLS-IHLQDDGD 61

Query: 62  GMTSEEIPMAVQRHCTSK---ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
           G T +E+   +   C SK    +    +    G+       IGAVS  +++S+       
Sbjct: 62  GYTCKELEKLLS--CASKPDPFATKAYSSSLLGY-------IGAVSQFSIVSKYKTAQNI 112

Query: 119 AQIAISGEK--------------------------------ISSVRPVAMNPGTIVEVRD 146
            ++  + +                                         +  G++  V +
Sbjct: 113 FKMESNFQDGSVTIHNTDNLQMQVQKLMQTLTLMLMQTLPYKQFCEIETVTHGSVYRVEN 172

Query: 147 LFFTIPARLNF------LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQS 200
           +F+  P R          K       +   ++      + + S   S            S
Sbjct: 173 IFYNFPVRRKQIQAMAVHKIVNSIKLVFLKLLLFNLGVHLEFSIKDSHAPQFEQVFKLTS 232

Query: 201 TNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTV 259
            + ++ + + Q +          +  +     + G  G+   N  +    Y+F+N + +
Sbjct: 233 KHDDYGQTLLQSLF-GLQITWQNIKARYKSFEITGIIGLEPVN--SKTHQYIFVNNKLM 288


>gi|75516614|gb|AAI01599.1| Postmeiotic segregation increased 2-like 3 [Homo sapiens]
 gi|119592172|gb|EAW71766.1| postmeiotic segregation increased 2-like 3, isoform CRA_b [Homo
           sapiens]
          Length = 169

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 90  IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 149

Query: 63  MTSEEIP 69
           +  E   
Sbjct: 150 VEEENFE 156


>gi|1304123|dbj|BAA07512.1| PMS6 [Homo sapiens]
 gi|1407579|dbj|BAA07473.1| hPMS6 [Homo sapiens]
          Length = 159

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 20 IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 79

Query: 63 MTSEEIP 69
          +  E   
Sbjct: 80 VEEENFE 86


>gi|171466333|gb|ACB46383.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSKI    D  +I + GFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIETFSDIYSIQSSGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++S +   +L  +++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|326469956|gb|EGD93965.1| hypothetical protein TESG_01494 [Trichophyton tonsurans CBS 112818]
          Length = 1000

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + +  QI +  I+   +  I EL++NSLDA +S V   +    K    + D+G G
Sbjct: 8   IRVLPQDVAGQIRSSSIVTSLNGVIVELLKNSLDANASAVMVNV-DFQKGTCTVEDDGIG 66

Query: 63  MTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           +   E        + H TSK          +G +G  +PS+ +++ +T+ SR        
Sbjct: 67  IPPNEFHENGGLGKLHHTSKFY---ITGQVYGRKGIFIPSLISMALVTITSRNVSFQETN 123

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
            +     K+             +    GT V V DLF  +P R
Sbjct: 124 SVIFRHSKLISRLCPAPIQHDLLHPQHGTRVAVNDLFSNLPVR 166



 Score =  103 bits (258), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 46/210 (21%)

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFN----STKITSQTLLTPEIIDLLEGECALIME 475
            +  + LV+VDQHAA ER   E++         S  +    L TP    +   E  L   
Sbjct: 732 REGEEVLVLVDQHAADERCRVEELFTTLCTLTTSGNVDITNLPTPISFRISAKEAILFEA 791

Query: 476 HDEDLHRLGIKAERFGPN----AIAIREIPAILSKKN--IPQLLRDII------------ 517
                   G   E         ++ +R +P +++++    P+L  D++            
Sbjct: 792 RSGYFSSWGCLYEVLRETEGCYSLVVRGLPTLIAERCRVEPRLAIDMLRAEVWDQTEISK 851

Query: 518 ----DEIIDSST--------------------TYTLQDRIENILATMACYGSIRSGRKMQ 553
                 + +  +                      +   ++ +++ + +C  +I     + 
Sbjct: 852 PSIRSALEECGSQGFAEIGLGVTETDHCWLQRIGSCPKKMVDLIVSRSCRSAIMFNDVLS 911

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             E   L+  + K     QC HGRP+ + +
Sbjct: 912 VSECRSLVSRLAKCAFPFQCAHGRPSMVPI 941


>gi|171466343|gb|ACB46388.1| Mlh1 [Giardia intestinalis]
 gi|171466347|gb|ACB46390.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITAFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                      A N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPGHLAVYMNGKLHFDPETLAAEYTDFFTSTFASNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKSNRYK 195
           F+    R N +++ +   ++   ++   A  +  + S +F +      +
Sbjct: 121 FYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQAIQR 169


>gi|326484137|gb|EGE08147.1| DNA mismatch repair protein [Trichophyton equinum CBS 127.97]
          Length = 1000

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L + +  QI +  I+   +  I EL++NSLDA +S V   +    K    + D+G G
Sbjct: 8   IRVLPQDVAGQIRSSSIVTSLNGVIVELLKNSLDANASAVMVNV-DFQKGTCTVEDDGIG 66

Query: 63  MTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           +   E        + H TSK          +G +G  +PS+ +++ +T+ SR        
Sbjct: 67  IPPNEFHENGGLGKLHHTSKFY---ITGQVYGRKGIFIPSLISMALVTITSRNVSFQETN 123

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
            +     K+             +    GT V V DLF  +P R
Sbjct: 124 SVIFRHSKLISRLCPAPIQHDLLHPQHGTRVAVNDLFSNLPVR 166



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 71/210 (33%), Gaps = 46/210 (21%)

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFN----STKITSQTLLTPEIIDLLEGECALIME 475
            +  + LV+VDQHAA ER   E++         S  +    L TP    +   E  L   
Sbjct: 732 REGEEVLVLVDQHAADERCRVEELFTTLCTLTTSGNVDITNLPTPISFRISAQEAILFEA 791

Query: 476 HDEDLHRLGIKAERFGPN----AIAIREIPAILSKKN--IPQLLRDII------------ 517
                   G   E         ++ +R +P +++++    P+L  D++            
Sbjct: 792 RSGYFSSWGCLYEVLRETEGCYSLVVRGLPTLIAERCRVEPRLAIDMLRAEVWDQTEISK 851

Query: 518 ------------DEIIDSS------------TTYTLQDRIENILATMACYGSIRSGRKMQ 553
                        E  +                 +   ++ +++ + +C  +I     + 
Sbjct: 852 PSIRSALEECGSQEFAEIGLGVTETDHCWLQRIGSCPKKMVDLIVSRSCRSAIMFNDVLS 911

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             E   L+  + K     QC HGRP+ + +
Sbjct: 912 VSECRSLVSRLAKCAFPFQCAHGRPSMVPI 941


>gi|171466345|gb|ACB46389.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITAFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                      A N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPGHLAVYMNGKLHFDPETLAAEYTDFFTSTFASNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKSNRYK 195
           F+    R N +++ +   ++   ++   A  +  + S +F +      +
Sbjct: 121 FYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQAIQR 169


>gi|34783389|gb|AAH36866.1| MLH3 protein [Homo sapiens]
          Length = 335

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 97/254 (38%), Gaps = 25/254 (9%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
           S  + Q      +N +       + D +  +      +     Y        IH   ++ 
Sbjct: 40  SSESLQSLFSEWDNPVFARYPEVAVDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQ 99

Query: 421 QTTD----GLVIVDQHAAHERLIFEKMRQDFNS-TKITSQTLLTPEIIDLLEGECALIME 475
           Q  +     L+        E   +EK +   +   K+ S TL+ P  I + E +  L+  
Sbjct: 100 QVDNKFIACLMSTKTEENGEADSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 159

Query: 476 HDEDLHRLG--IKAERFGPNAIAIREIPAILSKKN---------------IPQLLRDIID 518
           + ++L  LG          + + + ++P    ++                + + +R+ ++
Sbjct: 160 YHKNLEDLGLEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLE 219

Query: 519 EIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
            +  +     TL   ++ +LA+ AC+G+I+    +   E  RL+  +       QC HGR
Sbjct: 220 LLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQCAHGR 279

Query: 578 PTFIKLKLSDIEKL 591
           P+ + L  +DI+ L
Sbjct: 280 PSMLPL--ADIDHL 291


>gi|171466327|gb|ACB46380.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 15/166 (9%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   +  +   R  TSKI    D  +  +FGFRGEAL S
Sbjct: 1   IRLFVSSNCYDLLMVCDTGHGIERTDYSLLCHRFATSKIETFSDIYSTQSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVAVYIDGKLHFDPKTLTSEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           F+  P R N ++S +   +L  +++  ++ A P   ++ S I + +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISFIDNPQ 165


>gi|171466337|gb|ACB46385.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITAFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                      A N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPGHLAVYMNGKLHFDPETLAAEYTDFLTSTFASNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKSNRYK 195
           F+    R N +++ +   ++   ++   A  +  + S +F +      +
Sbjct: 121 FYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQAIQR 169


>gi|307267461|ref|ZP_07548948.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306917518|gb|EFN47805.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 63

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          KI  L EK IN+I+AGE++ERP+  +KELIENS+DA S  +   I  GG  + +++D+G
Sbjct: 3  KIHLLDEKTINKISAGEVVERPASIVKELIENSIDAGSKNITVEILEGGIPYIKVSDDG 61


>gi|171466351|gb|ACB46392.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITAFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-------------NPGTIVEVRD 146
           I  VS + ++S+      G        K+                     N  TI+ V D
Sbjct: 61  ISYVSRMIVISKVENQP-GHLAVYMNGKLHFDPETLAAEYTDFFTSTLASNSFTIICVTD 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMN 197
           LF+    R N +++ +   ++   ++   A  +  + S +F +               ++
Sbjct: 120 LFYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQAIQRELQAWLDDIH 179

Query: 198 FQSTNGNFPERISQVIGEDFINNAVELNEK 227
             S   +    I +          V    +
Sbjct: 180 TTSGMLSLISNIIESGVTALHFKPVTTRYE 209


>gi|1061424|gb|AAA97459.1| hPMSR3 [Homo sapiens]
          Length = 264

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 186 IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 245

Query: 63  MTSEEIP 69
           +  E   
Sbjct: 246 VEEENFE 252


>gi|325191795|emb|CCA25619.1| hypothetical protein PITG_07252 [Albugo laibachii Nc14]
          Length = 771

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 20/186 (10%)

Query: 424 DGLVIVDQHAAHERLIFEKMRQD-----FNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
             +V  DQHA  ER+  EK+ +           I          + +   E   +  +++
Sbjct: 584 CMIVAFDQHAVDERIKLEKLEKTLLGLSGTERNIERYHHCPGLKLWMNAQEDRALHVYEK 643

Query: 479 DLHRLGIKAERFG-------------PNAIAIREIPAILSKKNIPQLLRDIIDEII-DSS 524
            L   G   ER                 ++ ++  P    +       R+ ++ ++ + +
Sbjct: 644 TLDDWGFYFERISHDKSKYRMKESIDGTSLILKTSPKFDGRVATETDFREFVNYLLEEYA 703

Query: 525 TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
           TT  +   I  ++ + AC  +I  G  +   E  RLL ++ +     QC HGR +   L 
Sbjct: 704 TTEQIPPMISRLIKSRACRSAIMFGEWLSHAECQRLLSDLSRCSLPFQCAHGRSSIAPLA 763

Query: 585 LS-DIE 589
              D++
Sbjct: 764 EYQDLD 769



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 140/370 (37%), Gaps = 48/370 (12%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF-- 61
           +KLS +  + I A   I     AI E + N++DA++S ++  +     + F + DNG   
Sbjct: 2   KKLSSQ--HLILACHQIPHIVTAITETVYNAIDAQASAIKLYL-NLPHASFSVIDNGTHH 58

Query: 62  ---------------GMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
                          G  S+ +     RH  S  S+       +G  G  L S+ AV+ +
Sbjct: 59  LSYALTPPNPPFSGNGFKSDSLFNL--RHEES-ASESHETAAFYGANGAFLSSLIAVADV 115

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGT----IVEVRDLFFTIPARLN---FLK 159
            + SR        +      +++      ++  +     + V++LF  +P R       +
Sbjct: 116 EIESRARDEWIVYRKVFKNAEVTFNGRDTLSHRSITGVTISVKNLFGRLPIRRRLLGTSR 175

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN----FPERISQVIGE 215
            +Q     I +  + +++ +PK+SF      +N +     + + +    + +R+  + G 
Sbjct: 176 YQQSALTSIRNFFQSLSLIWPKISFEIICENANAHSNRIGAFHIDKVDEYLDRLVHMFGS 235

Query: 216 DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ-------------FYVFINGRT-VQD 261
              +    ++  + E ++ GY GI      + +               Y F+N R     
Sbjct: 236 TVASQLQSISHATMEFSVCGYFGITVTELSSRHWQIIQTSKHARNCYQYAFLNNRPHANF 295

Query: 262 KFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
           +  +S + +        G   V VL  +     +DV     K+ + F +    + F+ Q 
Sbjct: 296 QAQVSRVISKQIAKTCDGCLVVFVLAFQAGRDAMDVIKSDTKNGVIFASHDTFQAFMTQV 355

Query: 322 IQKAINKKGI 331
            +  I++  I
Sbjct: 356 TKMMISRSSI 365


>gi|171466355|gb|ACB46394.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                     +  N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTLVSNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNF 198
           F+    R N ++S +   ++   ++   A  +  + + +F +               ++ 
Sbjct: 121 FYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAIQRELQAWLDDIHT 180

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEK 227
            S   +    I +          V    +
Sbjct: 181 TSGMLSLISNIIESGVTALHFKPVTTRYE 209


>gi|171466349|gb|ACB46391.1| Mlh1 [Giardia intestinalis]
 gi|171466353|gb|ACB46393.1| Mlh1 [Giardia intestinalis]
 gi|171466359|gb|ACB46396.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                     +  N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTLVSNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNF 198
           F+    R N ++S +   ++   ++   A  +  + + +F +               ++ 
Sbjct: 121 FYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAIQRELQAWLDDIHT 180

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEK 227
            S   +    I +          V    +
Sbjct: 181 TSGMLSLISNIIESGVTALHFKPVTTRYE 209


>gi|313104156|sp|Q13401|PM2P3_HUMAN RecName: Full=Putative postmeiotic segregation increased 2-like
           protein 3; AltName: Full=PMS2-related protein 3;
           AltName: Full=Postmeiotic segregation increased 2-like
           protein 9; AltName: Full=Postmeiotic segregation
           increased protein 5; AltName: Full=Putative postmeiotic
           segregation increased 2 pseudogene 3
 gi|119592171|gb|EAW71765.1| postmeiotic segregation increased 2-like 3, isoform CRA_a [Homo
           sapiens]
          Length = 168

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++DNG G
Sbjct: 90  IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCG 149

Query: 63  MTSEEIP 69
           +  E   
Sbjct: 150 VEEENFE 156


>gi|171466361|gb|ACB46397.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                     +  N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPAHLAVYMNGKLRFDPETLAAEYTDLFTNTLVSNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNF 198
           F+    R N ++S +   ++   ++   A  +  + + +F +               ++ 
Sbjct: 121 FYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAIQRELQAWLDDIHT 180

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEK 227
            S   +    I +          V    +
Sbjct: 181 TSGMLSLISNIIESGVTALHFKPVTTRYE 209


>gi|330862098|emb|CBX72264.1| hypothetical protein YEW_EM19540 [Yersinia enterocolitica W22703]
          Length = 163

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 84/162 (51%)

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           ++RR+A+A   V+   S       +            R++ + G  F+ +A+ ++ +  +
Sbjct: 1   MVRRIALARFDVAINLSHNGKLMRQYRAAPDPSQHERRLASICGPAFLQHALAISWQHGD 60

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
           +T++G+   P  +R  +   Y ++N R ++D+ I   IR AY + +   + P  VL L+I
Sbjct: 61  LTIRGWVADPAASRTLSEMQYCYVNNRMMRDRLINHAIRQAYQDLLKDDQQPAYVLYLDI 120

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
           DP QVDVNVHPAK  +RF    ++ +FI Q++   + +    
Sbjct: 121 DPHQVDVNVHPAKHEVRFHQARLVHDFIYQAVTTVLQQTAAR 162


>gi|321463519|gb|EFX74534.1| putative MLH3, MutL protein 3 [Daphnia pulex]
          Length = 775

 Score =  113 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 93/201 (46%), Gaps = 28/201 (13%)

Query: 410 CAQIHQNYIISQTTDG----LVIVDQHAAHERLIFEKMRQDFNST------KITSQTLLT 459
            +Q+ + +I   T +     LV++DQHAAHER+  E++ Q  ++       ++ S  L  
Sbjct: 543 VSQVDRKFICCITREDEKRYLVLIDQHAAHERVCLERLMQMHSTKNDDGYIQVLSSPLHP 602

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQ-------- 511
              +    G+  LI +   +  R G+   +F  + ++   +P+    + I +        
Sbjct: 603 HLQLTFPIGDLQLIQKLSVEFTRFGLHL-QFSDSTVSATRVPSCFLAREINEIQRKRSSL 661

Query: 512 -------LLRDIIDEIIDSS--TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
                  L+ + I E   +   ++  L  +I N+L ++AC+G+I+ G ++   + ++L++
Sbjct: 662 YKDLVVALIDETIAEFTKTGRLSSCLLPAQIRNVLNSLACHGAIKFGDELTPTQCSQLVK 721

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            + +     QC HGRP    L
Sbjct: 722 ALGQCDVPFQCAHGRPLLAPL 742



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 131/358 (36%), Gaps = 23/358 (6%)

Query: 27  IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           ++EL+ NS+   ++ +   +    + F Q+ DNG G+ S ++ +   R+     + +  N
Sbjct: 11  VEELVLNSIHGNATCIAVRLDWMSR-FLQVVDNGRGIGSTQLQLFCSRN-----NQNVEN 64

Query: 87  IHTFGFRGEALPS-IGAVSHLTLMSRPPQNNTGAQIAISG--EKISSVRPVAMNPGTIVE 143
           +       EAL   I   S L + S+   ++   +        +           GT V 
Sbjct: 65  MVVDKHLEEALHLIIKHCSSLEIESQVKNSSVSYKRLYQNGIWRNVECVGTRSTSGTTVS 124

Query: 144 VRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNG 203
           V D F    +      +   +   +  +I    + +  +SF+     S    +  +    
Sbjct: 125 VFDFFRPPSSEE----TFDFDYQSLEKLIASFFLLHSHISFSLRVDPSKPPSLQTKKA-- 178

Query: 204 NFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKF 263
                +         ++ +     S    ++G       N    + +++F+N + V+ K 
Sbjct: 179 --KNTMLAAQQLFKSDSIIPFRGSSRHFKVKGL----FINHPGESSWFIFVNSQLVESKE 232

Query: 264 ILSTIRTAYAETIPLGRYPV-VVLLLEIDPRQVDVNVHPA-KSYIRFRNPTIIRNFIIQS 321
           I+  I +  +           ++L ++         +       + F N   + + I  S
Sbjct: 233 IVDLITSVLSNLTSSQEQRFAIILNIKCSRAVCKFTIDSNVNRGVAFLNWNELLSLIQSS 292

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
           + + I+   I  ++ +S+ +I+++   N   + L   +      Q+++  + + +S+ 
Sbjct: 293 LDQFISHAPIKKTAFVSRWLIAAYGDGNLTTSPLTIKSLDFYPPQQEIKTETSEMSSP 350


>gi|194388058|dbj|BAG65413.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 156/458 (34%), Gaps = 94/458 (20%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           ++L    +  +++ +II      +KELIENSLDA            G +   +       
Sbjct: 2   KQLPAATVRLLSSSQIITSVVSVVKELIENSLDA------------GATSVDV------- 42

Query: 64  TSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
                          K+                         + + +R   +N   Q  +
Sbjct: 43  ---------------KL-------------------------VLITTRTAADNFSTQYVL 62

Query: 124 S-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL---KSEQVETNLITDVIRRMAIAY 179
                I S +P  +  GT V    LF  +P R  F    K  + E   I D++    I  
Sbjct: 63  DGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGILK 122

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQGYT 237
           P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G+ 
Sbjct: 123 PDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFL 179

Query: 238 GIP-----TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLE 289
                     +     + ++FIN R V  K IL  IR  Y           YPV  L ++
Sbjct: 180 PKCDADHSFISLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 239

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLS 338
           +    VDVN+ P KS +  +N   +   +   +               NK  +S + ++ 
Sbjct: 240 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 299

Query: 339 KKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSE 391
            K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y  
Sbjct: 300 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 359

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
            +  +   +          +  + ++  SQT       
Sbjct: 360 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 397


>gi|302500378|ref|XP_003012183.1| DNA mismatch repair protein (Mlh3), putative [Arthroderma benhamiae
           CBS 112371]
 gi|291175739|gb|EFE31543.1| DNA mismatch repair protein (Mlh3), putative [Arthroderma benhamiae
           CBS 112371]
          Length = 999

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   +  QI +  I+   +  I ELI+NSLDA +S V   +    K    + D+G G
Sbjct: 8   IRMLPRDVAGQIRSSSIVTSLNSVIVELIKNSLDANASAVMVNV-DFQKGACTVEDDGIG 66

Query: 63  MTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           +   E        + H TSK          +G +G  + S+ +++ +T+ S         
Sbjct: 67  IPPNEFHENGGLGKLHHTSKFYT---TGQVYGRKGIFISSLISMALVTITSHNISFQETN 123

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
            +     K+             +    GT V V DLF  +P R
Sbjct: 124 SVIFRHSKLISRLCPAPIQHDLLHPQHGTRVAVNDLFSNLPVR 166



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 46/206 (22%)

Query: 424 DGLVIVDQHAAHERLIFEKMR----QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDED 479
           + LV+VDQHAA ER   E++         S  + +  L TP    +   E  L       
Sbjct: 735 EALVLVDQHAADERCRVEELFAALCNLSPSGNVDTTNLPTPISFRIPAQEARLFEARSGY 794

Query: 480 LHRLGIKA----ERFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTLQDRI 533
               G       E  G  ++ +R +P +++++    P+L  D++   I   T  +     
Sbjct: 795 FSSWGCLYQVLREAEGYYSLVVRGLPTLITERCRVEPRLAIDMLRSEIWDPTEISKPSIR 854

Query: 534 E------------------------------------NILATMACYGSIRSGRKMQSIEM 557
                                                +++ + +C  +I     +   E 
Sbjct: 855 SALEECGSQGFTENGLGMAETHHCWLQRISGCPKKMVDLIVSRSCRSAIMFNDVLSVSEC 914

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
             L+  + K     QC HGRP+ + +
Sbjct: 915 QNLVSRLAKCAFPFQCAHGRPSMVPI 940


>gi|171466339|gb|ACB46386.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  113 bits (283), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 17/170 (10%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +  +++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLLVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-------------NPGTIVEVRD 146
           I  VS + ++S+      G        K+                     N  TI+ V D
Sbjct: 61  ISYVSRMIVISKVENQP-GHLAVYMNGKLHFDPETLAAEYTDFFTSTLASNSFTIICVTD 119

Query: 147 LFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKSNRYK 195
           LF+    R N +++ +   ++   ++   A  +  + S +F +      +
Sbjct: 120 LFYADSIRRNQIRNSKANLDMQDLLMSISAANHTREYSISFISDSQAIQR 169


>gi|310800217|gb|EFQ35110.1| hypothetical protein GLRG_10254 [Glomerella graminicola M1.001]
          Length = 936

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 116/309 (37%), Gaps = 32/309 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L E +  ++ +   +   +  +  LI+NSLDA ++R++  I    +    + D+G
Sbjct: 1   MSIKPLPEDVTRRMRSSATVTSINGVVCGLIKNSLDAGATRLKIAI-DYSRGNCIVEDDG 59

Query: 61  FGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+   E        ++H TS+ + ++    + G  G  L S+ A+S LT+ S    +N+
Sbjct: 60  SGILPVEFRETGGLGRQHHTSRNATEYE---SHGANGNFLASVAALSLLTITSHHHLHNS 116

Query: 118 GAQIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS-------EQ 162
              + I   ++           R V  N GT V VRDLF ++  R+    +       ++
Sbjct: 117 QNSLTIHNSRVLARNIPALPEQRLVTFNHGTRVTVRDLFGSMAVRVKQRAAVSEKAAVDR 176

Query: 163 VETNLITDVIRRMAIAYPKVSFTFS---TIKSNRYKMNFQSTNGNFPERISQVIGEDFIN 219
             + L+ DV+  +      V+       +     ++      +         +     ++
Sbjct: 177 EWSRLVHDVVAILLAWPSDVALFVRDTVSNNETHFRPTATPRSDILTRSSRILAQSGLVD 236

Query: 220 N-----AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAE 274
                    +     ++++QG   +       A   ++      V ++   + + +    
Sbjct: 237 GLGQAPWTPIGASVGKLSIQGCISLNPAATRRA--QFISFGIHPVTNEHGTNILYSEVNR 294

Query: 275 TIPLGRYPV 283
                 + +
Sbjct: 295 VFAKSGFTM 303



 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 47/210 (22%)

Query: 421 QTTDGLVIVDQHAAHERLIFEKMRQDF-------NSTKITSQTLLTPEIIDLLEGECALI 473
           Q+   LV+VDQHAA ER   E + +D+             ++T+  P   +    EC ++
Sbjct: 699 QSNSVLVLVDQHAADERCRLEALMRDYFRPAKGSGEVVAKTETVQKPLRFEFSAKECKML 758

Query: 474 MEHDEDLHRLGIKAERFGPN------------AIAIREIPAILSKKN--IPQLLRDII-D 518
            +++    R G+  E   P              + +  +P  + ++    P+LL +++  
Sbjct: 759 RKYNHYFRRWGVFYEIEEPEEAQWRHRSKQLCKVDVTGLPPSILERCRSEPRLLAELLLQ 818

Query: 519 EIIDSSTTYTLQDR-------------------------IENILATMACYGSIRSGRKMQ 553
           E+  +        R                         I  +L + +C  +I     + 
Sbjct: 819 EVWRAEEGEVPPVRPLSLANGGLGHDVDWVSNFHGCPQGILALLNSRSCRSAIMFNDVLS 878

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             E   L+  + +     QC HGRP+ + L
Sbjct: 879 KDECESLVLRLSQCSFPFQCAHGRPSMVPL 908


>gi|70994800|ref|XP_752177.1| DNA mismatch repair protein (Mlh3) [Aspergillus fumigatus Af293]
 gi|66849811|gb|EAL90139.1| DNA mismatch repair protein (Mlh3), putative [Aspergillus fumigatus
           Af293]
          Length = 916

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 148/438 (33%), Gaps = 79/438 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           +I  L  +++ +I +   I   +  + EL++N+LDA +  V   +    GG     + D+
Sbjct: 7   RIEPLPPEVVAKIKSSTSIINLNRVVVELVKNALDANARTVSVTVDFHRGGC---VVEDD 63

Query: 60  GFGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK+         +G RG  L S+ ++S LT++S   + N
Sbjct: 64  GDGIPPAEFESDGGLGKAHHTSKLYS---ARAVYGRRGLFLASLASLSLLTVISHHVRYN 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +   +               SS +    + GT V V DLF  +P R         +  E 
Sbjct: 121 STNSVIFHHSTPIARFIPAPSSHQLSCSSHGTRVIVNDLFGNMPVRVKSRALALQKPDEF 180

Query: 166 NLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
               D +RR+ +       +      +  K+   +        I   +G   I   ++L 
Sbjct: 181 ERQWDDLRRLLV-------SLILANDHLTKLVVSTAGKERKLMIRPHVGRPGIRGDLDLK 233

Query: 226 EKSNEITLQGYT----------------------------------------GIPTFNRG 245
             ++ +   G                                            P + R 
Sbjct: 234 RIASILMQAGLIESQNSDSWNYVSASVPGISLRAAVSLVPSPTRKVQFISIGIDPVYPRN 293

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIP--------LGRYPVVVLLLEI-DPRQVD 296
           + +  Y  IN       F         ++  P        + ++P+  + +++ DPR++ 
Sbjct: 294 STDLLYSEINRLFALSDFGAVEAAPVSSDGHPGPRFTSKAVNKWPMFYIRIDVDDPRELF 353

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
              H            +I + ++  + + + + G+   +    K +S      +P     
Sbjct: 354 EEGHEVVPESNQSVQRLI-DVLVAMMSEFLKQHGLRPRAGRQTKDVSRSASVESPGAGRS 412

Query: 357 KYATSLTNTQEKLFLQEN 374
            +A S+++       +E 
Sbjct: 413 NFAKSVSSRDRSSIAEEA 430



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 62/224 (27%)

Query: 410 CAQIHQNYIISQTTDG------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
            AQ+ + +I+ +  DG      LV++DQHAA ER   E +     +        +  + I
Sbjct: 661 IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI 720

Query: 464 DLLEGECA--LIMEHDEDLHRLGIKAERFGPNA-----IAIREIPAILSKKN--IPQLLR 514
                     L  +H +     G+       ++     + +  +P +++++    P L+ 
Sbjct: 721 TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS 780

Query: 515 DIID--------------EIIDSSTTYTLQDR---------------------IENILAT 539
           D+I                + D     +   R                     I ++L +
Sbjct: 781 DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS 840

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            AC  +I     + + E   L            C HGRP+ + +
Sbjct: 841 RACRTAIMFNDMLTAEECKSL------------CAHGRPSMVPI 872


>gi|159124909|gb|EDP50026.1| DNA mismatch repair protein (Mlh3), putative [Aspergillus fumigatus
           A1163]
          Length = 916

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 148/438 (33%), Gaps = 79/438 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           +I  L  +++ +I +   I   +  + EL++N+LDA +  V   +    GG     + D+
Sbjct: 7   RIEPLPPEVVAKIKSSTSIINLNRVVVELVKNALDANARTVSVTVDFHRGGC---VVEDD 63

Query: 60  GFGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK+         +G RG  L S+ ++S LT++S   + N
Sbjct: 64  GDGIPPAEFESDGGLGKAHHTSKLYS---ARAVYGRRGLFLASLASLSLLTVISHHVRYN 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +   +               SS +    + GT V V DLF  +P R         +  E 
Sbjct: 121 STNSVIFHHSTPIARFIPAPSSHQLSCSSHGTRVIVNDLFGNMPVRVKSRALALQKPDEF 180

Query: 166 NLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
               D +RR+ +       +      +  K+   +        I   +G   I   ++L 
Sbjct: 181 ERQWDDLRRLLV-------SLILANDHLTKLVVSTAGKERKLMIRPHVGRPGIRGDLDLK 233

Query: 226 EKSNEITLQGYT----------------------------------------GIPTFNRG 245
             ++ +   G                                            P + R 
Sbjct: 234 RIASILMQAGLIESQNSDSWNYVSASVPGISLRAAVSLVPSPTRKVQFISIGIDPVYPRN 293

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIP--------LGRYPVVVLLLEI-DPRQVD 296
           + +  Y  IN       F         ++  P        + ++P+  + +++ DPR++ 
Sbjct: 294 STDLLYSEINRLFALSDFGAVEAAPVSSDGHPGPRFTSKAVNKWPMFYIRIDVDDPRELF 353

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLP 356
              H            +I + ++  + + + + G+   +    K +S      +P     
Sbjct: 354 EEGHEVVPESNQSVQRLI-DVLVAMMSEFLKQHGLRPRAGRQTKDVSRSASVESPGAGRS 412

Query: 357 KYATSLTNTQEKLFLQEN 374
            +A S+++       +E 
Sbjct: 413 NFAKSVSSRDRSSIAEEA 430



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 62/224 (27%)

Query: 410 CAQIHQNYIISQTTDG------LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII 463
            AQ+ + +I+ +  DG      LV++DQHAA ER   E +     +        +  + I
Sbjct: 661 IAQVDRKFILVKLADGRSSRSALVLIDQHAADERCRIESLFGAMFADGHRQVQSIRIDPI 720

Query: 464 DLLEGECA--LIMEHDEDLHRLGIKAERFGPNA-----IAIREIPAILSKKN--IPQLLR 514
                     L  +H +     G+       ++     + +  +P +++++    P L+ 
Sbjct: 721 TFDIPLMEAALFGKHADSFASWGVGYTVERKSSARAALVVVTSLPTLIAERCRLEPDLVS 780

Query: 515 DIID--------------EIIDSSTTYTLQDR---------------------IENILAT 539
           D+I                + D     +   R                     I ++L +
Sbjct: 781 DMIRGEIWKHEENGQGALALSDQRAQRSKVHRDELGVETEGNWVDRLTSCPQGIIDLLNS 840

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            AC  +I     + + E   L            C HGRP+ + +
Sbjct: 841 RACRTAIMFNDMLTAEECKSL------------CAHGRPSMVPI 872


>gi|171466335|gb|ACB46384.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 23/209 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSKITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                     +  N  TI+   DL
Sbjct: 61  ISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTLVSNSFTIICATDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNF 198
           F+    R N ++S +   ++   ++   A  +  + + +F +               ++ 
Sbjct: 121 FYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQATQRELQVWLDDIHT 180

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEK 227
            S   +    I +          V    +
Sbjct: 181 TSGMLSLISNIIESRVTALHFKPVTTRYE 209


>gi|171466315|gb|ACB46376.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 15/183 (8%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++          D G G+   +  +   R  TSKI    D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSSNCYDLLMACDTGHGIERTDYSLLCHRFATSKIETFSDIYSIQSFGFRGEALSS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+           I                   +  +  +  TI+ V DL
Sbjct: 61  ISYVSRMIVVSKTKNQPAYVAAYIDGKLHFDPKTLTPEHTDFFISTLKADSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPE 207
           F+  P R N ++S +   +L  +++  ++ A P   ++ S I + +       +  N  +
Sbjct: 121 FYAEPIRRNQIRSSKTSLDL-QELLISISAANPTREYSISFIDNPQAIQREIQSWLNDTQ 179

Query: 208 RIS 210
            IS
Sbjct: 180 HIS 182


>gi|154317739|ref|XP_001558189.1| hypothetical protein BC1G_03221 [Botryotinia fuckeliana B05.10]
 gi|150844395|gb|EDN19588.1| hypothetical protein BC1G_03221 [Botryotinia fuckeliana B05.10]
          Length = 542

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 2/74 (2%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           +I+ L   ++N+IAAGEII  P  A+KELIEN++DA S+ +E ++  GG    QITDNG 
Sbjct: 33  RIKALDPDVVNKIAAGEIIVAPVHALKELIENAVDAGSTSLEVLVKDGGLKLLQITDNGH 92

Query: 62  GMTSEEIPMAVQRH 75
           G+    +  + ++H
Sbjct: 93  GING--VAFSCKKH 104



 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 27/56 (48%)

Query: 277 PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
             G +P   L LEI+P ++DVNVHP K  + F N   I   I   I+  +     S
Sbjct: 118 STGGHPFTYLNLEIEPHRLDVNVHPTKREVNFLNEEEIIEKICNDIRIKLADVDKS 173


>gi|240280005|gb|EER43509.1| DNA mismatch repair protein [Ajellomyces capsulatus H143]
          Length = 1003

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 130/417 (31%), Gaps = 72/417 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I+ L  ++I Q+ +   I   +  + EL++NSLDA +  V   +    GG     + D+
Sbjct: 7   SIQPLPPEVIAQLTSSIAISHLNGVVLELLKNSLDAGAKTVSINVDFPKGGC---VVEDD 63

Query: 60  GFGMTSEEI---PMAVQRH---------CT----SKISDDFSNIHTFGFRGEALPSIGAV 103
           G G+   E        + H          T    SK +        +G +G  L S+ ++
Sbjct: 64  GHGILPAEFLEGSNLAKLHRAWFITMRPSTCADSSKFNSQHEV---YGRKGVFLASLVSL 120

Query: 104 SHLTLMSRPPQNNTGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPAR- 154
           + + + SR    +T   +     +               + + GT V V DLF  +P R 
Sbjct: 121 ALVIITSRHESASTTNTVMYHHARAISILTPAPLQHEINSRDHGTRVTVTDLFGNLPVRV 180

Query: 155 -------LNFLKSEQVE--TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
                        ++       I   +        K+  + ST               N 
Sbjct: 181 KHRALSLRTSQDLDREWDALKHILTAMLLAFQKRVKLVVSDSTKTKKLVIRASDPPFDNS 240

Query: 206 PERISQVIGEDFINN-----------AVELNEKSNEITLQGYTG---------------- 238
              +  +     +              V  + +++ I +Q                    
Sbjct: 241 SGTLDLIRIRSILMQAGYVMARDFQSWVTASARTSGIEVQSAISLQPAPTKQVQFISFGI 300

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
            P F + NAN+     + R    K      R        + ++P+  + ++++ R   ++
Sbjct: 301 NPIFPQSNANRTSSEGDARASNKKAPCWRGRYMGK---SINKWPMFCIRIDLEERGKAID 357

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
                   R  +P    + ++  IQK + +      S    K         +P  H 
Sbjct: 358 RMDGSLENRQDSPNRFLDVLVAMIQKFLEEYHFLPRSGAGAKRSHQPQSPTSPVEHQ 414



 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 72/223 (32%), Gaps = 62/223 (27%)

Query: 423 TDGLVIVDQHAAHERLIFEKMRQDFNS-------------TKITSQTLLTPEIIDLLEGE 469
              LV+VDQHAA ER   E++  +                 ++ + +L  P    +   E
Sbjct: 720 QQNLVLVDQHAADERCRVEQLFDELCGTTTATPDSSSFCRGRVNTASLPKPISFQVSPQE 779

Query: 470 CALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKN--IPQLLRDIID-EIID 522
             L+  H       G            + + + ++PA+++++    PQL  D++  EI D
Sbjct: 780 GELLKSHSGYFESWGCYYSLSNSERNYHTVTVDKLPALIAERCRLEPQLAIDLLRGEIWD 839

Query: 523 SST------------------------------------------TYTLQDRIENILATM 540
                                                               I ++L + 
Sbjct: 840 RKDHGRRDQTSFSPTLSSGNPEAGNSENSQGEAPPTIARQSWLERISDCPKAIVDLLNSR 899

Query: 541 ACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           AC  SI     +   E   L+ ++       QC HGRP+ I +
Sbjct: 900 ACRSSIMFNDILSPAECQNLISKLALCAFPFQCAHGRPSMIPI 942


>gi|195120550|ref|XP_002004787.1| GI20105 [Drosophila mojavensis]
 gi|193909855|gb|EDW08722.1| GI20105 [Drosophila mojavensis]
          Length = 489

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 14/219 (6%)

Query: 364 NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-----ESEATHYQLGIACAQIHQNYI 418
             QEK  ++  R +    L          N   E     E     ++      Q +  +I
Sbjct: 271 QAQEKQHVERKRSAKLQRLRFKSEINPNQNKNAEAELQKEITKADFKRMQIIGQFNLGFI 330

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDE 478
           I +  D L IVDQHAA E+  FE +++   +T++  Q L  P+ ++L      ++ +H  
Sbjct: 331 IVKLEDDLFIVDQHAADEKYNFEMLQR---NTQLEHQRLTVPQTLELTAVNEMILQDHLP 387

Query: 479 DLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TLQDRI 533
              + G K E          I +   P   + +   + + ++I  + D+         RI
Sbjct: 388 VFEKNGFKFEIDAEAPPTRKIRLLGKPFSKNWEFGKEDIDELIFMLQDAPEGTVCRPSRI 447

Query: 534 ENILATMACYGSIRSGRKMQS-IEMNRLLREMEKNPNSS 571
             + A+ AC  S+  G+ +     M RL+ +M +     
Sbjct: 448 RAMFASRACRKSVMVGKALNRTTTMRRLITQMGEIEQPW 486


>gi|167010884|ref|ZP_02275815.1| DNA mismatch repair protein [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 83

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 53/80 (66%)

Query: 515 DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           +I  E+I    T +++  + +ILAT++C+ ++R+  K+   EMN LLR+ME   NS QCN
Sbjct: 2   NIATELISLFKTKSVEFYLNHILATVSCHAAVRANDKLSIPEMNHLLRQMETVENSGQCN 61

Query: 575 HGRPTFIKLKLSDIEKLFGR 594
           HGRPT++KL  + ++  F R
Sbjct: 62  HGRPTWVKLNFAQLDSFFLR 81


>gi|159468113|ref|XP_001692227.1| hypothetical protein CHLREDRAFT_101121 [Chlamydomonas reinhardtii]
 gi|158278413|gb|EDP04177.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 193

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 25/189 (13%)

Query: 408 IACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLE 467
               Q +  +I++     + IVDQHAA E+  FE++++    T+      +      LL 
Sbjct: 2   QVLGQFNLGFILAAHGRDVFIVDQHAADEKTTFERLQRSVALTRQPLLAPMPLPPGLLLP 61

Query: 468 GECALIMEHDEDLHRLGIKAERFGPNAIAIREIPA--------------ILSKKNIPQLL 513
            +  LI EH +   R G            ++  PA                        +
Sbjct: 62  LDQLLIREHIDVFRRNGFDF---------VQRTPAGRLVPVPSPAPAPAPAPAPLSLAFV 112

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
             I   +   S       R+  +LA+ AC  SI  GR +   +M R+L  + +      C
Sbjct: 113 --IYSPVRVRSPPPNPDPRVRAMLASRACRSSIMVGRPLDRPQMRRVLDRLAELRQPWNC 170

Query: 574 NHGRPTFIK 582
            HGRPT   
Sbjct: 171 PHGRPTMRH 179


>gi|242050106|ref|XP_002462797.1| hypothetical protein SORBIDRAFT_02g032160 [Sorghum bicolor]
 gi|241926174|gb|EER99318.1| hypothetical protein SORBIDRAFT_02g032160 [Sorghum bicolor]
          Length = 786

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 22/186 (11%)

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLL-TPEIIDLLEGECALIMEHDEDLHRLGIK 486
             DQHAA ER+  E +R    S +    + L + E + L E    L  ++ E + + G  
Sbjct: 563 AFDQHAADERIRLEDLRSKVLSEEGHGVSYLDSEEELSLPETGFQLFQKYAEQIQKWGWI 622

Query: 487 AER-------FGPN---------AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQ 530
                     F  N          + +  +P IL  K   + L + I ++ ++  +  + 
Sbjct: 623 ISSGSNSSESFKKNMNVLKRQVRLVTLVAVPCILGVKLTGKDLMEFIWQLDETDGSSDIP 682

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPT---FIKLK--L 585
             +  IL   AC G+I  G  +   E   ++ E++      QC HGRPT    + +    
Sbjct: 683 PAVLRILNFKACRGAIMFGDSLLPSECCLIIEELKATSLCFQCAHGRPTTAPILNVTALH 742

Query: 586 SDIEKL 591
            ++ +L
Sbjct: 743 EELARL 748


>gi|319411837|emb|CBQ73880.1| related to MLH3-insertion and deletion mismatch repair protein
           [Sporisorium reilianum]
          Length = 848

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 112/326 (34%), Gaps = 49/326 (15%)

Query: 301 PAKSYIR--FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKY 358
           P+K  +     +   I  F   S+ KA+     S  S     +   F Q    +++ P+ 
Sbjct: 510 PSKRQLAAALDDSASIDEFEDPSLDKALA----SIPSPSGVSISDPFRQSRFFESNRPR- 564

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
            + L  T  + F  E     +      +   +     ++ ++      G        +  
Sbjct: 565 -SPLKRTFNRSFHDEGPDVHSAASQRKNLELAITRSDLQTADVLDQVDGKFILCSTSSSS 623

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNST---KITSQTLLTPEIIDLLEGECALIME 475
            S     L  +DQHAA ER   E++ Q + S       +  L +   + +   +  L+  
Sbjct: 624 SSALNPVLFCIDQHAADERYRLERLLQQYASDCAAGTAAHPLPSTFTLGIAVQQYELVSG 683

Query: 476 HDE---DLHRLGIKAER-------FGPNAIAIREIPAILS------------KKNIPQLL 513
           +     DL RLG   +         G   + +  IP +L             +  +    
Sbjct: 684 NASVRSDLQRLGWSIKEVVLVHAALGHAQMDLDGIPHVLKDKALTDRGRVKDQDLLQSAF 743

Query: 514 RDIIDEIIDSSTT----------------YTLQDRIENILATMACYGSIRSGRKMQSIEM 557
            + ++E+   ST+                 ++   + +++ + AC  +I     +     
Sbjct: 744 ANCLEEVAALSTSLSRLSAVEKTDWLTISRSIPTSLMDVIKSTACRSAIMFNDPLSREAS 803

Query: 558 NRLLREMEKNPNSSQCNHGRPTFIKL 583
            RL+R + +     QC HGRP+ + L
Sbjct: 804 ERLVRRLGECKFPFQCAHGRPSLVPL 829


>gi|171466357|gb|ACB46395.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 23/209 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +   ++        + D G G+   + P+   R  TSKI+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLFVSNNCYDLIMVYDTGHGIELADYPLLRHRFATSKITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                     +  N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTLVSNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNF 198
           F+    R N ++S +   ++   ++   A  +  + + +F +               ++ 
Sbjct: 121 FYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAIQRELQAWLDDIHT 180

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEK 227
            S   +    I +          V    +
Sbjct: 181 TSGMLSLISNIIESGVTALHFKPVTTRYE 209


>gi|332865550|ref|XP_003318555.1| PREDICTED: postmeiotic segregation increased 4-like protein-like
           [Pan troglodytes]
          Length = 397

 Score =  110 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG+G+  E+      +H T KI +  D   + TFGFRGEAL S+ A
Sbjct: 57  KLKDYGVDLIEVSGNGYGVEEEKFEGLTLKHHTFKIQEFADVPQVETFGFRGEALSSLCA 116

Query: 103 VSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKS 160
           +S +T+ +       G ++    + KI    P     GT V V+ LF T+P R   F ++
Sbjct: 117 LSDVTISTCHVSAKVGTRLVFDHDGKIIQKTPYPHPRGTTVSVKQLFSTLPVRHKEFQRN 176

Query: 161 EQVETNLITDVIRRMAIA 178
            + +         R    
Sbjct: 177 IKKKRACFPFAFCRDCQF 194


>gi|1304126|dbj|BAA07515.1| PMS8 [Homo sapiens]
 gi|1407581|dbj|BAA07475.1| hPMS8 [Homo sapiens]
 gi|119596965|gb|EAW76559.1| hCG2023604, isoform CRA_a [Homo sapiens]
          Length = 98

 Score =  110 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 19 IKPIDRKSVHQICSGPVVPSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSGNGCG 78

Query: 63 MTSEEIPMAVQRHCTSKIS 81
          +  E           SK++
Sbjct: 79 VEEENFEGL------SKLT 91


>gi|322701669|gb|EFY93418.1| MutL-like protein [Metarhizium acridum CQMa 102]
          Length = 566

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 157/446 (35%), Gaps = 39/446 (8%)

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           + +  + VA  PGT + V DLFF+IP R    +S   E N I D++ R +I    V FT 
Sbjct: 8   QPAEPKGVAGRPGTQITVEDLFFSIPTRRRAFRSYSDEFNKIIDMVGRYSIHCQGVGFTC 67

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYT-GIPTFNRG 245
                    ++ QS      +R+ Q+ G    N  V+ +        + +          
Sbjct: 68  KKAGEASNSLSIQSQATTL-DRVRQIYGGSVANELVDFSASDARWGFKAHVLATNANYHI 126

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSY 305
               F +FIN R+V+   +   I   Y   +P G +P + L LEIDP +VDVNVHP K  
Sbjct: 127 KKTTFLLFINNRSVESANVKKAIEQTYLNFLPKGGHPFIYLSLEIDPARVDVNVHPTKRE 186

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
           + F N   I + +   ++  +     S +      +  +     +   + P     +T  
Sbjct: 187 VHFLNEDEILHAVCTELESRLANVDTSRTFKTQTLLPGAKPVAESIDENQPSPRIMVTGK 246

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
           + +      R  T     +   ++++  +  +E       L +     ++      T   
Sbjct: 247 RRRNSNDLVRTDTYARKITTMFSHADSGEASKEKSTEEEPLAVPENIEYETNDREMTICR 306

Query: 426 LVIVDQHAAHERLIF-----EKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDL 480
           L  + +  +  R        E          +     L      +            E  
Sbjct: 307 LKSIKELRSEVRDNIHHDLTEIFASHTFVGIVDDSRRLAAIQSGVRLYLVDYGHTCFEYF 366

Query: 481 HRLGI-KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDS--------STTYTLQD 531
           +++G+     FG     IR  PA+         LRD++    ++           + ++ 
Sbjct: 367 YQVGLTDFGNFG----VIRFSPALK--------LRDLLQMAAETEKKVLGAADHDFPVEK 414

Query: 532 RIENILATMACYGSIRSGRKMQSIEM 557
            ++ +           + + ++  EM
Sbjct: 415 IVDKV-----------ANQLIERREM 429


>gi|302908156|ref|XP_003049804.1| hypothetical protein NECHADRAFT_89673 [Nectria haematococca mpVI
           77-13-4]
 gi|256730740|gb|EEU44091.1| hypothetical protein NECHADRAFT_89673 [Nectria haematococca mpVI
           77-13-4]
          Length = 837

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 130/415 (31%), Gaps = 90/415 (21%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M IR+L + ++++I +   I   +     L+ NSLDA + +V   I   G+    + D+G
Sbjct: 1   MTIRQLPQDVVDKIKSSVNITSLNGVACGLLANSLDAGAFKVNISI-DYGRGNCTVEDDG 59

Query: 61  FGMTSEEIPMA---VQRHCTSKISDDFSNIHTFGFRGEALPSIGAV----SHL------- 106
            G+  +E   A    + H TSK                  PS  ++              
Sbjct: 60  SGIPPDEFKDAGGLGKLHHTSKF-----------------PSRSSIHGKHGDFLASLATL 102

Query: 107 ---TLMSRPPQNNTGAQIAISGEKISSVR--------PVAMNPGTIVEVRDLFFTIPARL 155
              ++ S      +   I I   K+ +           V+ + GT V VRDLF ++P R+
Sbjct: 103 SLLSITSHHQSRISHNSITIHNSKVLARHLPSPPELRLVSFDHGTRVTVRDLFGSMPVRV 162

Query: 156 NFLKS-------EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPER 208
               S       ++  + L+ +V+  +      +  +     + R      S   +   +
Sbjct: 163 KQRASLTERPVLDKEWSKLVREVLAMLLAWPSGIHVSIKNTAAQRELRFRPSDKTDIVFK 222

Query: 209 I------SQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV---------- 252
                  + +     I+  V ++     ++++G           +    +          
Sbjct: 223 TSRLLMQASLADSSDIDCWVPISASCGPVSVKGCICTNPVATRRSQFISLGIHPIMNEFG 282

Query: 253 ----------------------FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
                                   N R      ++            + R+P+  L + I
Sbjct: 283 TDVLYEEINRVFSNSSFGVIDGDENKRPEDSPKLVGFSSKELRSRKAIERWPMFYLKITI 342

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
            P   D++    +   + +  + I + +  +    + K       V      S F
Sbjct: 343 -PDFDDLDGSD-RLESQGQTLSAILDLLKATCYGFLKKHHFRPRKVRLSPDESVF 395



 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 24/189 (12%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT-------PEIIDLLEGECA 471
             + +  LV++DQHA  ER   E +  D+     +++ +L        P + ++   E +
Sbjct: 619 PGKQSSALVMLDQHAVDERCRLEDLMTDYFVRDESTKQVLPTTEPLERPLVFEIPLQEHS 678

Query: 472 LIMEHDEDLHRLGIKA------ERFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIIDS 523
           L+ ++ +     GI            P  + +  +P  + ++    P+LL D++   I  
Sbjct: 679 LLDQNRDRFAAWGIVYQTPAPRSPSQPRKVVVTALPPSIMERCRLEPRLLIDLLRTEIWR 738

Query: 524 STTYTLQ------DRIENILATM--AC-YGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
           S    +          +    +    C  G+I     +   E  +L+  + +     QC 
Sbjct: 739 SVDEDVPLSQPSGSDHDKSWVSRFHGCPRGAIMFNDVLSVEECEQLVSRLSRCVFPFQCA 798

Query: 575 HGRPTFIKL 583
           HGRP+   L
Sbjct: 799 HGRPSMAPL 807


>gi|261197159|ref|XP_002624982.1| DNA mismatch repair protein [Ajellomyces dermatitidis SLH14081]
 gi|239595612|gb|EEQ78193.1| DNA mismatch repair protein [Ajellomyces dermatitidis SLH14081]
          Length = 958

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            IR L   ++ ++ +   I   +  + EL++NSLDA +    +      GG +   + D+
Sbjct: 7   SIRPLPSGVVAKLKSSIAISNLNGVVLELLKNSLDARAQTVSINVNFQRGGCA---VEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TS  +        +G +G  L S+ +++ +T+ S     +
Sbjct: 64  GQGILPAEFMEGGNLAKLHHTSGFNSPH---QVYGRKGAFLASLVSLALVTITSHHESAS 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF   P R+   
Sbjct: 121 TTNTVVYHHAKSISRLTPAPLQHELDSRDHGTRVTVTDLFGNFPVRVKHR 170



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 63/208 (30%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMR-------------QDFNSTKITSQTLLTPEIIDLLEG 468
               LV+VDQHAA ER   E++                F   +  + +L  P    +   
Sbjct: 726 RQQNLVLVDQHAADERCRIEQLFVELCGTAATTSDPSSFCQNRGNTSSLPKPISFQVSPQ 785

Query: 469 ECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIID 522
           E  L+  H +     G            + + I ++P +++++    P+L  D++   I 
Sbjct: 786 EGELLKSHSDYFEFWGCYYTLSPSERDYHTVTIDKVPTLIAERCRVEPKLAIDLLRNEIW 845

Query: 523 SSTTYTLQDR--------------------------------------------IENILA 538
               +  +DR                                            I ++L 
Sbjct: 846 ERKDHGRKDRKLPPQTLCSGIPEAGNSEKSPNDEVQPTIARHSWLELISDCPKTIIDLLI 905

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEK 566
           + AC  SI     +  +E   L+  + +
Sbjct: 906 SRACRSSIMFNDCLSRVECENLISRLAQ 933


>gi|327294793|ref|XP_003232092.1| hypothetical protein TERG_07710 [Trichophyton rubrum CBS 118892]
 gi|326466037|gb|EGD91490.1| hypothetical protein TERG_07710 [Trichophyton rubrum CBS 118892]
          Length = 1000

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 15/163 (9%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           IR L   +  QI +  I+   +  I +LI+NSLDA +S V   +    K    + D+G G
Sbjct: 8   IRVLPRDVAGQIRSSSIVTSLNGVIVDLIKNSLDANASAVMVNV-DFQKGTCTVEDDGIG 66

Query: 63  MTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
           +   E        + H TSK          +G +G  + S+ +++ +T+ SR        
Sbjct: 67  IPPNEFHENGGLGKLHHTSKFDT---TGQVYGRKGIFISSLISMALVTITSRNISFQETN 123

Query: 120 QIAISGEKI--------SSVRPVAMNPGTIVEVRDLFFTIPAR 154
            +     K+             +    GT V V DLF  +P R
Sbjct: 124 SVIFRHSKLISRLCPAPIQHDLLHPQHGTRVAVNDLFSNLPVR 166



 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 46/210 (21%)

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDFN----STKITSQTLLTPEIIDLLEGECALIME 475
            +  + LV+VDQHAA ER   E++         S  + +  L TP    +L  E  L   
Sbjct: 732 REGEEVLVLVDQHAADERCRVEELFTALCNLSPSGNVDTTNLPTPISFRILSQEARLFEA 791

Query: 476 HDEDLHRLGIKAERF----GPNAIAIREIPAILSKKN--IPQLLRDII-DEIIDSSTTYT 528
                   G   E      G  ++ +R +P +++++    P+L  D++  E+ D      
Sbjct: 792 RSGYFSSWGCLYEVLREAEGYYSLVVRGLPTLIAERCRVEPRLAIDMLRSEVWDQPEISK 851

Query: 529 L-----------------------------------QDRIENILATMACYGSIRSGRKMQ 553
                                                 ++ +++ + +C  +I     + 
Sbjct: 852 PSIRSALEECGSQGFVEKGLGKTETHHCWLQRIGGCPKKMVDLIVSRSCRSAIMFNDVLS 911

Query: 554 SIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             E   L+  + K     QC HGRP+ + +
Sbjct: 912 ISECQSLVSRLAKCAFPFQCAHGRPSMVPI 941


>gi|327351629|gb|EGE80486.1| DNA mismatch repair protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1005

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            IR L   ++ ++ +   I   +  + EL++NSLDA +    +      GG +   + D+
Sbjct: 7   SIRPLPSGVVAKLKSSIAISNLNGVVLELLKNSLDARAQTVSINVNFQRGGCA---VEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TS  +        +G +G  L S+ +++ +T+ S     +
Sbjct: 64  GQGILPAEFMEGGNLAKLHHTSGFNSPH---QVYGRKGAFLASLVSLALVTITSHHESAS 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF   P R+   
Sbjct: 121 TTNTVVYHHAKSISRLTPAPLQHELDSRDHGTRVTVTDLFGNFPVRVKHR 170



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 63/225 (28%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMR-------------QDFNSTKITSQTLLTPEIIDLLEG 468
               LV+VDQHAA ER   E++                F   +  + +L  P    +   
Sbjct: 726 RQQNLVLVDQHAADERCRIEQLFVELCGTAATTSDPSSFCQNRGNTSSLPKPISFQVSPQ 785

Query: 469 ECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIID 522
           E  L+  H +     G            + + I ++P +++++    P+L  D++   I 
Sbjct: 786 EGELLKSHSDYFEFWGCYYTLSPSERDYHTVTIDKVPTLIAERCRVEPKLAIDLLRNEIW 845

Query: 523 SSTTYTLQDR--------------------------------------------IENILA 538
               +  +DR                                            I ++L 
Sbjct: 846 ERKDHGRKDRKLPPRTLCSGIPEAGNSEKSPNDEVQPTIARHSWLELISDCPKTIIDLLI 905

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           + AC  SI     +  +E   L+  +       QC HGRP+ I +
Sbjct: 906 SRACRSSIMFNDCLSRVECENLISRLAVCAFPFQCAHGRPSMIPI 950


>gi|239606597|gb|EEQ83584.1| DNA mismatch repair protein [Ajellomyces dermatitidis ER-3]
          Length = 1005

 Score =  110 bits (274), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 19/170 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            IR L   ++ ++ +   I   +  + EL++NSLDA +    +      GG +   + D+
Sbjct: 7   SIRPLPSGVVAKLKSSIAISNLNGVVLELLKNSLDARAQTVSINVNFQRGGCA---VEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TS  +        +G +G  L S+ +++ +T+ S     +
Sbjct: 64  GQGILPAEFMEGGNLAKLHHTSGFNSPH---QVYGRKGAFLASLVSLALVTITSHHESAS 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T   +     K               + + GT V V DLF   P R+   
Sbjct: 121 TTNTVVYHHAKSISRLTPAPLQHELDSRDHGTRVTVTDLFGNFPVRVKHR 170



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 63/225 (28%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMR-------------QDFNSTKITSQTLLTPEIIDLLEG 468
               LV+VDQHAA ER   E++                F   +  + +L  P    +   
Sbjct: 726 RQQNLVLVDQHAADERCRIEQLFVELCGTAATTSDPSSFCQNRGNTSSLPKPISFQVSPQ 785

Query: 469 ECALIMEHDEDLHRLGIKA----ERFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIID 522
           E  L+  H +     G            + + I ++P +++++    P+L  D++   I 
Sbjct: 786 EGELLKSHSDYFEFWGCYYTLSPSERDYHTVTIDKVPTLIAERCRVEPKLAIDLLRNEIW 845

Query: 523 SSTTYTLQDR--------------------------------------------IENILA 538
               +  +DR                                            I ++L 
Sbjct: 846 ERKDHGRKDRKLPPQTLCSGIPEAGNSEKSPNDEVQPTIARHSWLELISDCPKTIIDLLI 905

Query: 539 TMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           + AC  SI     +  +E   L+  +       QC HGRP+ I +
Sbjct: 906 SRACRSSIMFNDCLSRVECENLISRLAVCAFPFQCAHGRPSMIPI 950


>gi|255030819|ref|ZP_05302770.1| DNA mismatch repair protein [Listeria monocytogenes LO28]
          Length = 161

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
            +     E     EE             Q+H  YI +Q  +GL I+DQHAA ER+ +E  
Sbjct: 1   METMPPYEPQAEQEEHSKERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEFY 60

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
           R+         Q LL P +++    E   + E    L  +G+  E FG N+  IR  P  
Sbjct: 61  REKIGEVSRELQELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAHPTW 120

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
             K    ++LR+IIDE + +  + ++    E+    M+C  S
Sbjct: 121 FPKDQEEEMLREIIDEALSAP-SISIHKLREDTAIMMSCKKS 161


>gi|294890797|ref|XP_002773319.1| DNA mismatch repair protein pms1, putative [Perkinsus marinus ATCC
           50983]
 gi|239878371|gb|EER05135.1| DNA mismatch repair protein pms1, putative [Perkinsus marinus ATCC
           50983]
          Length = 423

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 85/218 (38%), Gaps = 9/218 (4%)

Query: 366 QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDG 425
           ++   + + R S      +      +            ++      Q+ + +II +    
Sbjct: 189 KQSSDVYKQRASIVGESMAKVHLKLDPQHITINFNRNMFKSLTDVRQVDRKFIIGRFGGT 248

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L+ +DQHAA ER+  E++     S  I      T  ++ L   + +L+   + +L   G 
Sbjct: 249 LLAIDQHAAGERVGLERLMS---SAGILETQPTTGTLLVLKPTDASLLHAREAELEEHGW 305

Query: 486 KAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS 545
           +    G  A+ +  +P I     +     D++      +       ++  + +T AC+ +
Sbjct: 306 RFAIIGARAV-VTGVPKI-RIGTLTASPYDLL----PWANELPFPAKLHYMYSTTACHQA 359

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           ++ G  M   E++ L+  +       QC HGRPT   +
Sbjct: 360 VKFGDSMSPSEVSALVSSLGICELPFQCAHGRPTVYPI 397


>gi|74706325|sp|Q13670|PM2PB_HUMAN RecName: Full=Putative postmeiotic segregation increased 2-like
           protein 11; AltName: Full=PMS2-related protein 6;
           AltName: Full=Putative postmeiotic segregation increased
           2 pseudogene 11
 gi|1061426|gb|AAA97460.1| hPMSR6 [Homo sapiens]
          Length = 270

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 161 IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNIDLKLKDYGMDLIEVSGNGCG 220

Query: 63  MTSEEIP 69
           +  E   
Sbjct: 221 VEEENFE 227


>gi|50311665|ref|XP_455859.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644995|emb|CAG98567.1| KLLA0F17347p [Kluyveromyces lactis]
          Length = 610

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 19  IIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +I+ P  A+K+LIENS+DA  ++V   I    GG  + Q+ D+G G++ ++      +H 
Sbjct: 19  VIDNPVSAVKQLIENSIDANCTKVLIKIDESSGGCRYIQLNDDGNGISVQKRSSVFVKH- 77

Query: 77  TSKISDDFSNIHTFGFRGEALPSIGAVS----HLTLMSRPPQNNTGAQI---AISGEKIS 129
                 D  +    G++G AL +IG  +     + +++R    N   +     I   +  
Sbjct: 78  ---FKTDGKSCKRIGYKGRALYNIGKTASKKGSIEVITRTISENVAVKWSPPRIRINETI 134

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
               V   PGT V +RDL     +     K ++    +I D++   ++ +  + F+   +
Sbjct: 135 RFSKVVNPPGTTVILRDLMTGSKSSR-LAKKDKNYIKMIRDMLFHFSLIHKHICFSCQLV 193

Query: 190 K----SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
                 +   + + +  G + +R+SQ        N +   E  +EI L 
Sbjct: 194 NPLRDGSIKTLEYVARFGKYEDRMSQFKKHVTKQNLIVEFEHFDEIELS 242


>gi|238491946|ref|XP_002377210.1| DNA mismatch repair protein (Mlh3), putative [Aspergillus flavus
           NRRL3357]
 gi|220697623|gb|EED53964.1| DNA mismatch repair protein (Mlh3), putative [Aspergillus flavus
           NRRL3357]
          Length = 670

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 74/191 (38%), Gaps = 33/191 (17%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKIT-----SQTLLTPEIIDLLEGECALIMEHDEDL 480
           LV++DQHAA ER   E++ +++ +  +          L P I ++   E  +   + +  
Sbjct: 438 LVLIDQHAADERCRVERLFEEYFTPPVEGSRQVQTVTLEPIIFEIPVTEAYVFGRYKQFF 497

Query: 481 HRLGIKAE----RFGPNAIA-IREIPAILSKKN------IPQLLR--------------- 514
              G++          +A   +  +P +++++       +  L+R               
Sbjct: 498 EFWGVEYTVEQGPADKSAYIFVHTLPMLIAERCRLEPELVTNLIRGEIWRREENGRGPEN 557

Query: 515 --DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
              ++++   +         I  +L + AC  +I    ++   E   L+  + +     Q
Sbjct: 558 RVSVLEQDRWAEQLDICPQGIIELLNSRACRTAIMFNDELTIGECQSLVENLARCVFPFQ 617

Query: 573 CNHGRPTFIKL 583
           C HGRP+ I L
Sbjct: 618 CAHGRPSMIPL 628



 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 18/99 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           +I  L  +++ ++ +   I   +  I EL++N+LDA +  V  ++    GG     + DN
Sbjct: 7   RIEPLPPEVVAKLKSSTSITHLNGVIVELVKNALDANAHTVSVMVDFQRGGCK---VEDN 63

Query: 60  GFGMTSEEI-------------PMAVQRHCTSKISDDFS 85
           G G+   E               + +  H TS   +D  
Sbjct: 64  GDGIQPTEFKPDGGLGKAHLQQELGLGNHGTSVTVNDLF 102


>gi|171466341|gb|ACB46387.1| Mlh1 [Giardia intestinalis]
          Length = 281

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS--DDFSNIHTFGFRGEALPS 99
           +  +++        + D G G+   + P+   R  TS+I+  +D  +I +FGFRGEAL S
Sbjct: 1   IGLLVSNNCYDLIMVYDTGHGIELADYPLLCHRFATSEITTFNDIYSIQSFGFRGEALAS 60

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAIS------------GEKISSVRPVAMNPGTIVEVRDL 147
           I  VS + ++S+         + ++                     +  N  TI+ V DL
Sbjct: 61  ISYVSRMIVISKVENQPAHLAVYMNGKLHFDPETLAAEYTDFFTNTLVSNSFTIICVTDL 120

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKS--------NRYKMNF 198
           F+    R N ++S +   ++   ++   A  +  + + +F +               ++ 
Sbjct: 121 FYADSIRRNQIRSSKASLDMQDLLMSISAANHTREYAISFISDSQAIQRELQAWLDDIHT 180

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEK 227
            S   +    I +          V    +
Sbjct: 181 TSGMLSLISNIIESGVTALHFKPVTTRYE 209


>gi|119188093|ref|XP_001244653.1| hypothetical protein CIMG_04094 [Coccidioides immitis RS]
          Length = 995

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 111/358 (31%), Gaps = 58/358 (16%)

Query: 283 VVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMI 342
           ++     +    +++N    ++     +  I    I  S ++    +   +        I
Sbjct: 589 IIQWTDPLTKEALNINERTGQTLPTNGSKRIPFRSISLSSRQPRTYRADGSRPSSPTPWI 648

Query: 343 SSFHQDNAPKTHLP--KYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
            S  Q        P  +   S+         QEN   +  L  + D   +  +       
Sbjct: 649 DSVLQKWKNPVFGPFERPIPSIRPATPNQLEQENTRLSGVLPIAADFENACSSSFTGRLT 708

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGL----------VIVDQHAAHERLIFEKMRQDFN-- 448
            +        AQ+   +I+ +  + L          V+VDQHAA ER+  E++  +    
Sbjct: 709 KSGLTNAQIVAQVDNKFILLRMIESLGDKSGFQRILVLVDQHAADERIRVERLFDELCGS 768

Query: 449 --STKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-----RFGPNAIAIREIP 501
             S  + +  L  P +  +   E  L     +     G          F    + +  +P
Sbjct: 769 SPSHTVDTTPLPEPILFKVSSEEARLFESRTDYFASWGCSYSTSRDKSFPHATVEVTTLP 828

Query: 502 AILSKKN--IPQLLRDIIDEIIDSSTTYTLQDR--------------------------- 532
            ++ ++    P+L  D++   I +        +                           
Sbjct: 829 TLIFERCRAEPKLAIDLLRSEIWARKDDKTTSKPKVASAASASAEEVGGGEPTSAPHWPH 888

Query: 533 --------IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
                   I ++L + AC  +I    K+   E   L+  + K     QC HGRP+ + 
Sbjct: 889 SISHCPRGIIDLLNSRACRSAIMFNDKLSKKECKELISTLAKCVFPFQCAHGRPSMVP 946



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            I  L  K+  QI +   I   + AI  L++NSLDA++    +      GG +   + D+
Sbjct: 7   SILPLPPKVAAQIESSTSITSLNSAILGLVKNSLDADAQTVAITVDFQKGGCA---VEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+ + E        + H TSK++     +  +G +G  LPS+ +++ LT+ SR   ++
Sbjct: 64  GEGIPASEFEEGGGLGKLHHTSKLNS-LREV--YGCKGVFLPSLASLALLTVTSRHGPDS 120

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           +   +                    A   GT V V +LF  +P R+   
Sbjct: 121 STNSVTYHHSTTISRLCPAPPHHEFASEHGTKVTVTNLFGNLPVRVKHR 169


>gi|218515115|ref|ZP_03511955.1| DNA mismatch repair protein [Rhizobium etli 8C-3]
          Length = 82

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 60/82 (73%)

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           M + ++ +AV+RHCTSKIS+   +I T GFRGEALPSIG+V+ L + SR   +  G +IA
Sbjct: 1   MEATDLELAVRRHCTSKISETLEDIRTLGFRGEALPSIGSVARLNIASRRRDSAGGHEIA 60

Query: 123 ISGEKISSVRPVAMNPGTIVEV 144
           ++G KI  +RP A NPGTIVEV
Sbjct: 61  VAGGKIVHIRPAAANPGTIVEV 82


>gi|169773913|ref|XP_001821425.1| DNA mismatch repair protein (Mlh3) [Aspergillus oryzae RIB40]
 gi|83769286|dbj|BAE59423.1| unnamed protein product [Aspergillus oryzae]
          Length = 929

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 74/191 (38%), Gaps = 33/191 (17%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKIT-----SQTLLTPEIIDLLEGECALIMEHDEDL 480
           LV++DQHAA ER   E++ +++ +  +          L P I ++   E  +   + +  
Sbjct: 697 LVLIDQHAADERCRVERLFEEYFTPPVEGSRQVQTVTLEPIIFEIPVTEAYVFGRYKQFF 756

Query: 481 HRLGIKAE----RFGPNAIA-IREIPAILSKKN------IPQLLR--------------- 514
              G++          +A   +  +P +++++       +  L+R               
Sbjct: 757 EFWGVEYTVEQGPADKSAYIFVHTLPMLIAERCRLEPELVTNLIRGEIWRREENGRGPEN 816

Query: 515 --DIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
              ++++   +         I  +L + AC  +I    ++   E   L+  + +     Q
Sbjct: 817 RVSVLEQDRWAEQLDICPQGIIELLNSRACRTAIMFNDELTIGECQSLVENLARCVFPFQ 876

Query: 573 CNHGRPTFIKL 583
           C HGRP+ I L
Sbjct: 877 CAHGRPSMIPL 887



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 29/252 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           +I  L  +++ ++ +   I   +  I EL++N+LDA +  V  ++    GG     + DN
Sbjct: 7   RIEPLPPEVVAKLKSSTSITHLNGVIVELVKNALDANAHTVSVMVDFQRGGCK---VDDN 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK   D      +G +G  L S+ A+S LT+ S   +++
Sbjct: 64  GDGIQPTEFKPDGGLGKAHHTSKYHTD---TGVYGQKGLFLASLAALSLLTITSHHVRHS 120

Query: 117 TGAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
               I +                     N GT V V DLF  +P R            E 
Sbjct: 121 NANTIMLHHSTPVARLIPAPVQQELGLGNHGTSVTVNDLFGNMPVRVKNRALALQRHDEL 180

Query: 166 NLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
           +   D +R++ +       +      N  K+     + +    I         +  ++L 
Sbjct: 181 DRQWDELRQLLV-------SLMIANDNLTKLVIIEASKDKRIIIRSRTQNRRTDGELDLQ 233

Query: 226 EKSNEITLQGYT 237
              +     G  
Sbjct: 234 RIVSIFAQAGLI 245


>gi|149005926|ref|ZP_01829655.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762282|gb|EDK69243.1| DNA mismatch repair protein HexB [Streptococcus pneumoniae
           SP18-BS74]
          Length = 104

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 504 LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
           ++++ I   + ++ D ++ +    +++     +   M+C  SI++  ++      +LL +
Sbjct: 1   MAEEEIESGIYEMCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQ 59

Query: 564 MEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           + +  N   C HGRP  +    SD+EK+F R
Sbjct: 60  LSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 90


>gi|281204981|gb|EFA79175.1| MutL DNA mismatch repair protein [Polysphondylium pallidum PN500]
          Length = 1447

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 7/228 (3%)

Query: 356  PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
              +A S  + +++  ++E +                 N   +     H       AQ+ +
Sbjct: 1194 SNFAGSQVDMEQQKQIREAKQKQKIQNEELQRKMVLQNKSSDRVTREHIDNVRFIAQLDK 1253

Query: 416  NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIME 475
             Y++ ++     ++DQHA  ER+  E   +   +  +    +   E   L   E  L+ E
Sbjct: 1254 KYLLCESNGLFFVMDQHAVSERINLENYSRAIPNFDV----VPLNERWSLTPDEMHLMSE 1309

Query: 476  HDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIEN 535
            +  ++ + G K  +   + I +   P + S+      L + +  I D             
Sbjct: 1310 YKAEIEKYGFKW-QANKSTITLESAPKVCSQTLGVGQLHEYLSMIADREIGP--PPSFHR 1366

Query: 536  ILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            I  T AC  +I+ G  +       L++E+ K  +   C HGRP  + +
Sbjct: 1367 IRQTHACARAIKFGHNLPRERCENLMKELAKCNDPFHCAHGRPASVSM 1414



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           L E ++  I +   I     A++E++ N++D+ ++ +   I     +F  + DNG  +  
Sbjct: 17  LGEDVVTSIRSTLSIVSYEQALEEIVYNAIDSNATAISVTINTTTLAF-DVKDNGASIDL 75

Query: 66  EEIPMAVQRHCTSKISD--DFSNIHTFGFRGEA 96
            ++ +  +R+CTSK +   DF ++HTFGFRGE+
Sbjct: 76  ADLKLVGERNCTSKFTTPQDFEHLHTFGFRGES 108



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 36/220 (16%)

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI--------- 189
           GTIV+VR+LF  +P R   + +       +   +  +A+++P +SFT             
Sbjct: 184 GTIVKVRELFRFVPVRRQNI-NHSSLRLSVKKKLENIALSHPNISFTLFDETKGPIFETP 242

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP-TFNRGNAN 248
             +++   F S  G     I + I         E + +S++  L GY  +P      N +
Sbjct: 243 SDHQFLSIFSSFYGQVKANIMEFIDS------TEFSHQSHDYRLNGYLCLPTKKGHPNQS 296

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGR------------------YPVVVLLLEI 290
              +F+N R V +  +   +   Y                          +P+  L LE 
Sbjct: 297 LQLIFVNNRIVYNTKLHRIVNQLYKSFRLFNETKLAEENHTKIRKEVIDIHPMYCLFLEC 356

Query: 291 DPRQVDVNVHP-AKSYIRFRNPTIIRNFIIQSIQKAINKK 329
                D +  P +K+++ F+N  +  N     + + ++K 
Sbjct: 357 PFTSYDRSYEPTSKTFLEFKNWQLPTNLFKGVLTRFLSKN 396


>gi|78128016|gb|ABB22297.1| DNA mismatch repair protein [Pseudomonas aeruginosa]
          Length = 147

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 81/146 (55%)

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
            +VI+R+A+A   V+F         + ++          R+  V G+ F+  A+ +  + 
Sbjct: 2   QEVIKRLALARFDVAFHLRHNGKTIFALHEARDELARARRVGAVCGQAFLEQALPIEVER 61

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLL 288
           N + L G+ G+PTF+R   +  Y ++NGR V+DK +   +R AY + +  GR+P  VL  
Sbjct: 62  NGLHLWGWVGLPTFSRSQPDLQYFYVNGRMVRDKLVAHAVRQAYRDVLYNGRHPTFVLFF 121

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTII 314
           E+DP  VDVNVHP K  +RFR+  +I
Sbjct: 122 EVDPAVVDVNVHPTKHEVRFRDSRMI 147


>gi|320038066|gb|EFW20002.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 995

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 56/285 (19%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
              +   S+         QEN   +  L  + D   +  +        +        AQ+
Sbjct: 662 PFERPIPSIRPATPNQLEQENTGLSRVLPIAADFENACSSSFTGRLTKSGLTNAQIVAQV 721

Query: 414 HQNYIISQTTDGL----------VIVDQHAAHERLIFEKMRQDFN----STKITSQTLLT 459
              +I+ +  + L          V+VDQHAA ER+  E++  +      S  + +  L  
Sbjct: 722 DNKFILLRMIESLGDKSGFQRILVLVDQHAADERIRVERLFDELCGSSPSHTVDTTPLPE 781

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAE-----RFGPNAIAIREIPAILSKKN--IPQL 512
           P +  +   E  L     +     G          F    + +  +P ++ ++    P+L
Sbjct: 782 PILFKVSSEEARLFESRTDYFASWGCSYSTSRDKSFPHATVEVTTLPTLIFERCRAEPKL 841

Query: 513 LRDIIDEIIDSSTTYTLQDR-----------------------------------IENIL 537
             D++   I +        +                                   I ++L
Sbjct: 842 AIDLLRSEIWARKDDKTTSKPKVASAASASAEEVGGGETTSAPHWPHSISHCPRGIIDLL 901

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            + AC  +I    K+   E   L+  + K      C HGRP+ + 
Sbjct: 902 NSRACRSAIMFNDKLSKKECKELISTLAKCVFPFHCAHGRPSMVP 946



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            I  L  K+  QI +   I   + AI  L++NSLDA++    +      GG +   + D+
Sbjct: 7   SILPLPPKVAAQIESSTSITSLNSAILGLVKNSLDADAQTVAITVDFQKGGCA---VEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+ + E        + H TSK++     +  +G +G  LPS+ +++ LT+ SR   ++
Sbjct: 64  GEGIPASEFEEGGGLGKLHHTSKLNS-LREV--YGCKGVFLPSLASLALLTVTSRHGPDS 120

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           +   +                    A   GT V V +LF  +P R+   
Sbjct: 121 STNSVTYHHSTTISRLCPAPPHHEFASEHGTKVTVTNLFGNLPVRVKHR 169


>gi|303316568|ref|XP_003068286.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240107967|gb|EER26141.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 995

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 89/285 (31%), Gaps = 56/285 (19%)

Query: 354 HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQI 413
              +   S+         QEN   +  L  + D   +  +        +        AQ+
Sbjct: 662 PFERPIPSIRPATPNQLEQENTGLSRVLPIAADFENACSSSFTGRLTKSGLTNAQIVAQV 721

Query: 414 HQNYIISQTTDGL----------VIVDQHAAHERLIFEKMRQDFN----STKITSQTLLT 459
              +I+ +  + L          V+VDQHAA ER+  E++  +      S  + +  L  
Sbjct: 722 DNKFILLRMIESLGDKSGFQRILVLVDQHAADERIRVERLFDELCGSSPSHTVDTTPLPE 781

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAE-----RFGPNAIAIREIPAILSKKN--IPQL 512
           P +  +   E  L     +     G          F    + +  +P ++ ++    P+L
Sbjct: 782 PILFKVSSEEARLFESRTDYFASWGCSYSTSRDKSFPHATVEVTTLPTLIFERCRAEPKL 841

Query: 513 LRDIIDEIIDSSTTYTLQDR-----------------------------------IENIL 537
             D++   I +        +                                   I ++L
Sbjct: 842 AIDLLRSEIWARKDDKTTSKPKVASAASASAEEVGGGETTSAPHWPHSISHCPRGIIDLL 901

Query: 538 ATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK 582
            + AC  +I    K+   E   L+  + K      C HGRP+ + 
Sbjct: 902 NSRACRSAIMFNDKLSKKECKELISTLAKCVFPFHCAHGRPSMVP 946



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 18/169 (10%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
            I  L  K+  QI +   I   + AI  L++NSLDA++    +      GG +   + D+
Sbjct: 7   SILPLPPKVAAQIESSTSITSLNSAILGLVKNSLDADAQTVAITVDFQKGGCA---VEDD 63

Query: 60  GFGMTSEEIP---MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+ + E        + H TSK++     +  +G +G  LPS+ +++ LT+ SR   ++
Sbjct: 64  GEGIPASEFEEGGGLGKLHHTSKLNS-LREV--YGCKGVFLPSLASLALLTVTSRHGPDS 120

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           +   +                    A   GT V V +LF  +P R+   
Sbjct: 121 STNSVTYHHSTTISRLCPAPPHHEFASEHGTKVTVTNLFGNLPVRVKHR 169


>gi|171689700|ref|XP_001909790.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944812|emb|CAP70924.1| unnamed protein product [Podospora anserina S mat+]
          Length = 906

 Score =  107 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 162/468 (34%), Gaps = 80/468 (17%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I++L   ++ QI +  II   + A+  L+ NSLDA S+++   +   G+    + DNG
Sbjct: 1   MSIQQLPRDVVAQIKSSTIITSLNTAVCGLLRNSLDARSTKINISV-DYGRGSCSVEDNG 59

Query: 61  FGMTSEEIP---MAVQRHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
            G+            Q H TSK   S D       G  GE L S+G++S LT+ S     
Sbjct: 60  VGIPPSNFREGGGLGQLHYTSKYPPSADCH-----GKHGEFLASLGSLSLLTVTSHHRDY 114

Query: 116 NTGAQIAISGEKISSVRPVAMN--------PGTIVEVRDLFFTIPARLNFLKSEQVET-- 165
            +   + I    + +    A+          GT V VRDLF  +P R+    +E      
Sbjct: 115 RSHNSLTIHKSNVVTRNVPALPEQRILGFSSGTRVAVRDLFGYLPVRVKQRATEMERLGT 174

Query: 166 -----NLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPER------------ 208
                 LI + +  +     +V+       + R      S   +  +             
Sbjct: 175 SGYFDQLIHEAVALLLAWPGEVAVNLQDSIARRTVSLQTSPLADIEKHHLLSARDVLLRT 234

Query: 209 -----ISQVIGEDFINNAVELNEKSNEITLQGYTG----------------IPTFNRGNA 247
                 + ++ ++   + V +   +  IT++G                    P+ N G++
Sbjct: 235 PKLLLAASLLDQENPKSWVSIGATAPGITVRGCVSLEPAATKRVQFIALGIQPSLNEGHS 294

Query: 248 NQFYVFINGRTVQD----------------KFILSTIRTAYAETIPLGRYPVVVLLLEID 291
           N  Y  +N                      + +    R        + R+P+  L + ++
Sbjct: 295 NFLYDEVNNVFANSSFGTIEEAGVDDDGYPQKMAGFTRKELKPRKGVDRWPMFFLQIILE 354

Query: 292 PRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS---FHQD 348
                V+        R  N +II + +     + + K      SV + K + +      D
Sbjct: 355 HGLGSVDADDFLDERRP-NLSIIVDLLQVMAYEFLKKHMFRPRSVHAIKQLKTGTVSGSD 413

Query: 349 NAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
            A +T+    +   +  +  +L ++      +    ++  + S  +  
Sbjct: 414 FAFETNRKSASQLPVARSASRLSVRTKASRKSTTRDTETRSASPFSSW 461



 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 41/199 (20%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKIT--------SQTLLTPEIIDLLEGECALIMEHD 477
           LVI+DQHAA ER   E + +++                 L      DL   E  L++   
Sbjct: 667 LVIIDQHAADERYRVEALLKEYFVPNPDDGRSLVAARTHLDKKLFFDLSRQEGELLVRFK 726

Query: 478 EDLHRLGIKAERFGPN-----AIAIREIPAILSKKN--IPQLLRDIIDE----IIDSSTT 526
                 G+  +    +      + ++ +P  + ++    P+LL +++      + ++ + 
Sbjct: 727 RHFAYWGVIYDLTTQDQASRVTVEVQALPPSIVERCRLEPRLLVELLRNEIWKLHENPSK 786

Query: 527 ----------------------YTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
                                 +   + I  ++ + AC  SI     +   +  +L++ +
Sbjct: 787 QAGIVPRLPIGDEADHQWFSRFHNCPEGIIELIHSRACRSSIMFNDVLTKEQCFQLVQNL 846

Query: 565 EKNPNSSQCNHGRPTFIKL 583
                  QC HGRP+ + L
Sbjct: 847 ATCAFPFQCAHGRPSMVPL 865


>gi|307108242|gb|EFN56483.1| hypothetical protein CHLNCDRAFT_145166 [Chlorella variabilis]
          Length = 561

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 63/336 (18%), Positives = 128/336 (38%), Gaps = 36/336 (10%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSRV--ETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
            AG ++  PS A  EL+ NS+D+ ++ V  E  IA  G    ++ DNG G+ +  + +  
Sbjct: 26  RAGSVVSAPSQAAVELLANSIDSAATEVHLELDIADWGL---RVQDNGRGIPATRLGLLG 82

Query: 73  QRHCTSKISDDFSNIH-TFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISS 130
           +R      +        T G+RGEAL ++ A +  + ++SR   +    ++ +   ++  
Sbjct: 83  RRFA----ATPLPAARPTLGYRGEALAALCAAAQEVEVVSRAMDSFETHRVLLRSGQVVE 138

Query: 131 VRPV---AMNPGTIVEVRDLFFTIPARLNFLKSE--QVETNLITDVIRRMAIAYPKVSFT 185
                  +   GT V +R LFF  P R   L +   Q E +     + ++A+    ++FT
Sbjct: 139 QGLALDQSSRQGTCVTIRGLFFNQPVRRKALLTAGLQREVDRCKQAVIQLALLRSHITFT 198

Query: 186 FSTIKSNRYKMNFQSTNG-NFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                   + +      G +  + + + +G    + AV          + GY  +P    
Sbjct: 199 CFDRGRKAFLLRLLKARGRSQEQTVGEYLGHHREHIAVVQPVPGALHAVSGYAALPPQGH 258

Query: 245 GNANQFYVFINGRTVQDKFILSTIRTAYAETI-------------------PLGRYPVVV 285
            NA++  + +NGR++    I   +   + +                        R+   V
Sbjct: 259 SNASRQLLLLNGRSINAPAISRLVTALFQQLYRPNMRLENVQGEELQQLHQAANRHAAFV 318

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQS 321
           L +     + ++          F +   +   +  S
Sbjct: 319 LQISCKADEYELAHEADGHVAHFLSWEPLLKALKPS 354



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 42/182 (23%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
           G A  Q+   +I       L +VDQHAA ER+  E +R                      
Sbjct: 364 GRALQQVQCKFIPVMCGSLLALVDQHAADERVQLELLRDHLLGPGGQP------------ 411

Query: 467 EGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD------IIDEI 520
                    H + L                    P  L   ++   L +       +  +
Sbjct: 412 ------WQVHSKILRA------------------PLPLGLTDVEGQLLEAYQHKLYLHHL 447

Query: 521 IDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            D+  +  L   +  +L + AC G+I  G ++   E   LL  +++      C HGRPT 
Sbjct: 448 QDTCGSGGLPAAVIRVLNSKACRGAIMFGDRLSQAECQELLNSLKQTRLCFSCAHGRPTM 507

Query: 581 IK 582
           + 
Sbjct: 508 VP 509


>gi|195583624|ref|XP_002081617.1| GD25620 [Drosophila simulans]
 gi|194193626|gb|EDX07202.1| GD25620 [Drosophila simulans]
          Length = 138

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 475 EHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTY-TL 529
            H +   + G K E          + +   P     +   + + ++I  + D+       
Sbjct: 5   NHIDVFEKNGFKFEVDHEAPATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICR 64

Query: 530 QDRIENILATMACYGSIRSGRKMQSIE-MNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R+  + A+ AC  S+  G  +     M RL+ +M +      C HGRPT   L
Sbjct: 65  PSRVRAMFASRACRKSVMIGTALSRNTTMRRLITQMGEIEQPWNCPHGRPTMRHL 119


>gi|326515170|dbj|BAK03498.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 146

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          IR+L E ++N+IAAGE+I+RPS  +K+L+EN++DA+S  +   +  GG    Q++D G G
Sbjct: 20 IRRLEESVVNRIAAGEVIQRPSSVMKDLVENNIDADSFTISITVKDGGLKLIQVSDGGHG 79

Query: 63 MTSEEIPMAVQRHCT 77
          +    + + +    T
Sbjct: 80 IW---MELILAEFAT 91


>gi|289616228|emb|CBI57024.1| putative MLH3 protein [Sordaria macrospora]
          Length = 966

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 80/205 (39%), Gaps = 47/205 (22%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITS------------QTLLTPEIIDLLEGECALI 473
           LV+VDQHAA ER+  E + + + +   +S            Q+L  P   DL + +  L+
Sbjct: 713 LVLVDQHAADERVRVEDLMKSYFTIAPSSGGTKSNEIIAQTQSLQRPLRFDLSKQDGTLL 772

Query: 474 MEHDEDLHRLGIKAERFGPN------AIAIREIPAILSKKN--IPQLLRDII-------- 517
           + +       GI  E F          + ++ +P  + ++    P++L +++        
Sbjct: 773 LRYKLHFEYWGIFYEVFAGEDHSTRFTVEVQSLPPSILERCRLEPRVLIELLRKEVWRLN 832

Query: 518 DEI-------------IDSSTTYTL------QDRIENILATMACYGSIRSGRKMQSIEMN 558
           D +              +      +       + I  +L + +C  +I    ++   E  
Sbjct: 833 DNLGLGLSTSHGIRGAQEEGERDWVARFHDCPEGILELLNSRSCRSAIMFNDELSLEECK 892

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKL 583
            L+ ++ +     QC HGRP+ + L
Sbjct: 893 SLVLQLAECAFPFQCAHGRPSMVPL 917



 Score = 97.4 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          M I+ L   ++ QI +  +I   +  +  L+ NSLDA ++++   I    +    + DNG
Sbjct: 1  MSIQPLPGDVVAQIKSSAVITSLNGVVDGLLRNSLDAGATKINISI-DYSRGNCSVEDNG 59

Query: 61 FGMTS----EEIPMAVQRHCTSKISDD 83
           G+      E+  +  + + TS+   D
Sbjct: 60 LGIPPACFREDGGL-GKLYYTSRYPPD 85


>gi|212528600|ref|XP_002144457.1| DNA mismatch repair protein (Mlh3), putative [Penicillium marneffei
           ATCC 18224]
 gi|210073855|gb|EEA27942.1| DNA mismatch repair protein (Mlh3), putative [Penicillium marneffei
           ATCC 18224]
          Length = 922

 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 19/171 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I  L  ++  ++ +   I   +  I EL +N+LDA +  V  V+    GG     + D+
Sbjct: 7   PILPLPPEVAKKVQSSVKITNLNGVIVELTKNALDAGAGTVSIVVDYRRGGS---IVEDD 63

Query: 60  GFGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G+G+ + E        + H TSK      ++ +   +G+ L ++  +S LT+ SR   + 
Sbjct: 64  GYGLPAAEFRDGSGLCRPHHTSKAGR--QSVSSC--KGQFLAALATISLLTISSRHCGHP 119

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
               +     K+        + + +    GT V V +LF  +P R+    S
Sbjct: 120 ETNSVIFHESKVISRVVPAPTHQEIRGGHGTRVTVNNLFGNMPVRVKHRAS 170



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 46/204 (22%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITS-------QTLLTPEIIDLLEGECALIMEHDE 478
           LV++DQHAA ER   E +  D  +    S           T     + E E A + ++  
Sbjct: 677 LVLIDQHAADERCRLEHLLFDMFTLDGESGVLSIRTHPFPTLIQCPIQEDEVASLTKYTR 736

Query: 479 DLHRLGIKAERFGP-------NAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTL 529
                G   +           ++I I  +P +++++    P+L   +I + I S     +
Sbjct: 737 YFESWGCHYKVQQELVDGKRQHSIIIEALPLVIAERCRLEPKLFIQLIRKEIWSRAGERI 796

Query: 530 QDRIE------------------------------NILATMACYGSIRSGRKMQSIEMNR 559
               +                               ++ + AC  SI     +   E   
Sbjct: 797 PPLRQNTSMATSISKPENRSFPWLRWIAGCPEGILELINSRACRSSIMFNDPLPIEECQN 856

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L+  + K     QC HGRPT I +
Sbjct: 857 LISRLSKCAFPFQCAHGRPTMIPI 880


>gi|116196096|ref|XP_001223860.1| hypothetical protein CHGG_04646 [Chaetomium globosum CBS 148.51]
 gi|88180559|gb|EAQ88027.1| hypothetical protein CHGG_04646 [Chaetomium globosum CBS 148.51]
          Length = 91

 Score =  106 bits (265), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
          +I+ L + ++N+IAAGEII  P  A+KELIEN++DA S+ +E +   GG    QITDNG 
Sbjct: 28 RIKALDQDVVNKIAAGEIIVAPVHALKELIENAVDAGSTSLEVLAKDGGLKLLQITDNGS 87

Query: 62 GMT 64
          G+ 
Sbjct: 88 GID 90


>gi|111380659|gb|ABH09706.1| MLH3-like protein [Penicillium marneffei]
          Length = 900

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 46/204 (22%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITS-------QTLLTPEIIDLLEGECALIMEHDE 478
           LV++DQHAA ER   E +  D  +    S           T     + E E A + ++  
Sbjct: 655 LVLIDQHAADERCRLEHLLFDMFTLDGESGVLSIRTHPFPTLIQCPIQEDEVASLTKYTR 714

Query: 479 DLHRLGIKAERFGP-------NAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTL 529
                G   +           ++I I  +P +++++    P+L   +I + I S     +
Sbjct: 715 YFESWGCHYKVQQELVDGKRQHSIIIEALPLVIAERCRLEPKLFIQLIRKEIWSRAGERI 774

Query: 530 QDRIE------------------------------NILATMACYGSIRSGRKMQSIEMNR 559
               +                               ++ + AC  SI     +   E   
Sbjct: 775 PPLRQNTSMATSISKPENRSFPWLRWIAGCPEGILELINSRACRSSIMFNDPLPIEECQN 834

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           L+  + K     QC HGRPT I +
Sbjct: 835 LISRLSKCAFPFQCAHGRPTMIPI 858



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 60/171 (35%), Gaps = 41/171 (23%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I  L  ++  ++ +   I   +  I EL +N+LDA +  V  V+    GG     + D+
Sbjct: 7   PILPLPPEVAKKVQSSVKITNLNGVIVELTKNALDAGAGTVSIVVDYRRGGS---IVEDD 63

Query: 60  GFGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G+G+ + E        + H TSK             R                SR   + 
Sbjct: 64  GYGLPAAEFRDGSGLCRPHHTSKAG-----------R---------------HSRHCGHP 97

Query: 117 TGAQIAISGEKI-------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
               +     K+        + + +    GT V V +LF  +P R+    S
Sbjct: 98  ETNSVIFHESKVISRVVPAPTHQEIRGGHGTRVTVNNLFGNMPVRVKHRAS 148


>gi|317038460|ref|XP_001401452.2| DNA mismatch repair protein (Mlh3) [Aspergillus niger CBS 513.88]
          Length = 943

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 51/306 (16%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
             + +    I+      ++ IS+       +T  P  ++     +   F           
Sbjct: 610 WVEKLLDNWINPVFGRPERPISAMDVSAGHETARPGSSSRNNQGELCGFESMGVSKFRGK 669

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
           L   D   +E    V++          +           +    L+++DQHAA ER   E
Sbjct: 670 LRKQDLRAAEIIAQVDQKFILVKMQLPSN-------SPGEPASNLILIDQHAADERCRVE 722

Query: 442 KMRQDFNSTKITSQ-----TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNA- 494
            +  +  +++  S        L P I ++   E +L   +    H  G+      GP   
Sbjct: 723 ALMAELFTSEEDSPGSIQTITLDPIIFEIPATEASLFERYRNFFHSWGVAYTMEQGPKDK 782

Query: 495 ---IAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTLQDR----------------- 532
              I +  +P +++++    P L+ D+I   I        + R                 
Sbjct: 783 NVFIFVHTLPTLIAERCRTEPNLVSDLIRGEIWKREEENGRSRQPHHPTGFGASRPDMAQ 842

Query: 533 ---------------IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
                          I ++L + AC  ++     +   E   L+R +       QC HGR
Sbjct: 843 TSSSWVDRLDGCPRGIIDLLNSRACRTAVMFNDVLDKNECQSLVRRLADCVFPFQCAHGR 902

Query: 578 PTFIKL 583
           P+ I +
Sbjct: 903 PSMIPI 908



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 127/419 (30%), Gaps = 72/419 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           KIR L   ++ ++ +   I   +  I EL++N+LDA +  V   +    GG     + D+
Sbjct: 7   KIRPLPPDVVAKLKSSTAITHLNGVIVELVKNALDANARTVCVTVDFVRGGC---IVEDD 63

Query: 60  GFGMTSEEI---PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK   +   I   G +G  L S+ A+S LT+ S   +++
Sbjct: 64  GDGIPPAEFGPDGGLGKAHHTSKYHSN-HTIE--GRKGLFLASLAALSLLTITSHHVRHS 120

Query: 117 TGAQIAISG--------EKISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +   +                         GT V V DLF  +P R            E 
Sbjct: 121 STNTVTFHHLTPVARLMPAPVYQELRFSAHGTSVTVNDLFGNMPVRVKSRALALQRPDEL 180

Query: 166 NLITDVIRRMAIA----------------YPKVSFTFSTIK------------SNRYKMN 197
               D +R   ++                +     T                   R  + 
Sbjct: 181 ERQWDELRHFLVSFMVANDRVAKLVILDAHRDKKITVCPQGLARQYGGEPDLQRLRSILA 240

Query: 198 FQSTNGNFPERISQVIGEDFINNAVE-----LNEKSNEITLQGYTGIPTFNRGNANQFYV 252
                G     I   +     +  +          + ++        P F R NAN  Y 
Sbjct: 241 QSGLVGAQNTGIWDTVSASVSDFTIHAAVSLTPSPTKKVQFVSLGSTPVFARSNANLIYA 300

Query: 253 FINGRTVQ---------DKFILSTIRTAYAETIP-------LGRYPVVVLLLEIDPRQVD 296
            +N                 + + +R A  + +        + ++P+  + ++       
Sbjct: 301 EVNRSFALSDFGSMKNCSSAVEAPVRAADGQLMHSKPASKAVNKWPMFYIRIDSCNEWSI 360

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
            +          ++   I + +   I + + +  +   +   K+   +        + +
Sbjct: 361 DDDTQELPE-SDKSLQRIIDVLSTMINEFLRQSSLRPRTGKRKRSTPNVPPATTRHSSV 418


>gi|195172650|ref|XP_002027109.1| GL20045 [Drosophila persimilis]
 gi|194112922|gb|EDW34965.1| GL20045 [Drosophila persimilis]
          Length = 290

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 9/172 (5%)

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                Q +  +II +  D L IVDQHA+ E+  FE +++   ST++  Q L  P+ +DL 
Sbjct: 1   MDIIGQFNLGFIIVKLQDDLFIVDQHASDEKYNFETLQR---STQLEYQRLTVPQSLDLT 57

Query: 467 EGECALIMEHDEDLHRLGIKAERFGP----NAIAIREIPAILSKKNIPQLLRDIIDEIID 522
                ++++H     + G K E          + +   P     +   + + ++I  + D
Sbjct: 58  AVNEMVLIDHLPVFEKNGFKFEINHEAPATKKVRLLGKPYSRQWEFGKEDIDELIFMLQD 117

Query: 523 SSTTY-TLQDRIENILATMACYGSIRSGRKMQS-IEMNRLLREMEKNPNSSQ 572
           +         R+ ++ A+ AC  S+  G  +     M RL+ +M +      
Sbjct: 118 APEGTICRPSRVRSMFASRACRKSVMIGTALNRTTTMRRLITQMGEIEQPWN 169


>gi|134058357|emb|CAK38544.1| unnamed protein product [Aspergillus niger]
          Length = 969

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 51/306 (16%)

Query: 322 IQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDL 381
             + +    I+      ++ IS+       +T  P  ++     +   F           
Sbjct: 610 WVEKLLDNWINPVFGRPERPISAMDVSAGHETARPGSSSRNNQGELCGFESMGVSKFRGK 669

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
           L   D   +E    V++          +           +    L+++DQHAA ER   E
Sbjct: 670 LRKQDLRAAEIIAQVDQKFILVKMQLPSN-------SPGEPASNLILIDQHAADERCRVE 722

Query: 442 KMRQDFNSTKITSQ-----TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAE-RFGPNA- 494
            +  +  +++  S        L P I ++   E +L   +    H  G+      GP   
Sbjct: 723 ALMAELFTSEEDSPGSIQTITLDPIIFEIPATEASLFERYRNFFHSWGVAYTMEQGPKDK 782

Query: 495 ---IAIREIPAILSKKN--IPQLLRDIIDEIIDSSTTYTLQDR----------------- 532
              I +  +P +++++    P L+ D+I   I        + R                 
Sbjct: 783 NVFIFVHTLPTLIAERCRTEPNLVSDLIRGEIWKREEENGRSRQPHHPTGFGASRPDMAQ 842

Query: 533 ---------------IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
                          I ++L + AC  ++     +   E   L+R +       QC HGR
Sbjct: 843 TSSSWVDRLDGCPRGIIDLLNSRACRTAVMFNDVLDKNECQSLVRRLADCVFPFQCAHGR 902

Query: 578 PTFIKL 583
           P+ I +
Sbjct: 903 PSMIPI 908



 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 127/419 (30%), Gaps = 72/419 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
           KIR L   ++ ++ +   I   +  I EL++N+LDA +  V   +    GG     + D+
Sbjct: 7   KIRPLPPDVVAKLKSSTAITHLNGVIVELVKNALDANARTVCVTVDFVRGGC---IVEDD 63

Query: 60  GFGMTSEEI---PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+   E        + H TSK   +   I   G +G  L S+ A+S LT+ S   +++
Sbjct: 64  GDGIPPAEFGPDGGLGKAHHTSKYHSN-HTIE--GRKGLFLASLAALSLLTITSHHVRHS 120

Query: 117 TGAQIAISG--------EKISSVRPVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVET 165
           +   +                         GT V V DLF  +P R            E 
Sbjct: 121 STNTVTFHHLTPVARLMPAPVYQELRFSAHGTSVTVNDLFGNMPVRVKSRALALQRPDEL 180

Query: 166 NLITDVIRRMAIA----------------YPKVSFTFSTIK------------SNRYKMN 197
               D +R   ++                +     T                   R  + 
Sbjct: 181 ERQWDELRHFLVSFMVANDRVAKLVILDAHRDKKITVCPQGLARQYGGEPDLQRLRSILA 240

Query: 198 FQSTNGNFPERISQVIGEDFINNAVE-----LNEKSNEITLQGYTGIPTFNRGNANQFYV 252
                G     I   +     +  +          + ++        P F R NAN  Y 
Sbjct: 241 QSGLVGAQNTGIWDTVSASVSDFTIHAAVSLTPSPTKKVQFVSLGSTPVFARSNANLIYA 300

Query: 253 FINGRTVQ---------DKFILSTIRTAYAETIP-------LGRYPVVVLLLEIDPRQVD 296
            +N                 + + +R A  + +        + ++P+  + ++       
Sbjct: 301 EVNRSFALSDFGSMKNCSSAVEAPVRAADGQLMHSKPASKAVNKWPMFYIRIDSCNEWSI 360

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
            +          ++   I + +   I + + +  +   +   K+   +        + +
Sbjct: 361 DDDTQELPE-SDKSLQRIIDVLSTMINEFLRQSSLRPRTGKRKRSTPNVPPATTRHSSV 418


>gi|224157795|ref|XP_002199479.1| PREDICTED: similar to mutL homolog 3 (E. coli), partial
           [Taeniopygia guttata]
          Length = 161

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 21/136 (15%)

Query: 475 EHDEDLHRLGIKAE--RFGPNAIAIREIPAILSKKNIPQL-----------LRDIIDEII 521
              ++L  LG++        + I +R++P    ++   +L           + ++I E +
Sbjct: 1   CCYKNLEDLGLELSFPETNNSLILVRKVPMCFIEREANELRRKRQPITKSIVEELIQEQV 60

Query: 522 DS------STTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
           +           TL      +LA+ AC+G+I+    +   E  RL+  +       QC H
Sbjct: 61  ELLQTTRGGARGTLPLTFLKVLASQACHGAIKFNEHLTLEESCRLIEALSSCKLPFQCAH 120

Query: 576 GRPTFIKLKLSDIEKL 591
           GRP+ + L  +DI+ L
Sbjct: 121 GRPSMLPL--ADIDHL 134


>gi|156400210|ref|XP_001638893.1| predicted protein [Nematostella vectensis]
 gi|156226017|gb|EDO46830.1| predicted protein [Nematostella vectensis]
          Length = 252

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 71/160 (44%), Gaps = 21/160 (13%)

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA---IAIREIPAILSKK 507
           ++ S  +  P  +D    E  LI     +L R G++       +   +   E+PA+  ++
Sbjct: 69  RVKSVPVSPPIEVDFTPEELRLIKSFRRELERTGLRFVIGSEPSAFRVIAHELPAVFVER 128

Query: 508 NIPQL-----------LRDIIDEIIDS-----STTYTLQDRIENILATMACYGSIRSGRK 551
              +L           ++D+I E +         T  +   I  +L++ AC+G+I+ G  
Sbjct: 129 EASELRHRRRSVAASIVKDLIQEQLQHLTSACGVTPGIPKTILRVLSSQACHGAIKFGEP 188

Query: 552 MQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKL 591
           +   E  +L++++       QC HGRP+ + L   D+++L
Sbjct: 189 LAVAECEQLIQDLASCNLPFQCAHGRPSTVPL--IDLKRL 226


>gi|154290225|ref|XP_001545711.1| hypothetical protein BC1G_15789 [Botryotinia fuckeliana B05.10]
 gi|150847845|gb|EDN23038.1| hypothetical protein BC1G_15789 [Botryotinia fuckeliana B05.10]
          Length = 780

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           I+ +  + I+QI +G++I      +KEL+ENSLDA ++ V+      G    ++ DNG
Sbjct: 3  TIKPIEGRTIHQIQSGQVIVDLCSVVKELVENSLDAGATSVDVRFKNQGLEAIEVQDNG 61



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 5/144 (3%)

Query: 231 ITLQGYTGIPTFN--RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLG--RYPVVVL 286
           I + G+   P     R   ++   F+N R      +       Y      G  + P +  
Sbjct: 84  IRIIGHISRPATGEGRQTPDRQMFFVNSRPCGLPQVAKAFNEVYKSYNGWGSTQSPFIFA 143

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGISTSSVLSKKMISSF 345
            +E+D    DVNV P K  I   + + +   +  ++      +      S L  +    +
Sbjct: 144 NIELDTHLYDVNVSPDKRTILLHDQSRMLENLKTALAGLFEGQDHTIPVSQLLAQKQPQY 203

Query: 346 HQDNAPKTHLPKYATSLTNTQEKL 369
            Q    +       +    +Q   
Sbjct: 204 KQLTINREATGTSKSLQKRSQASP 227



 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 84/201 (41%), Gaps = 23/201 (11%)

Query: 306 IRFRNPTIIRNFIIQSIQKA--INKKGISTSSVLSK----KMISSFHQDNAPKTHLPKYA 359
            + R    ++  I +  + A   +++ IS + +L K    +  S+F+      T +    
Sbjct: 576 KKIREEAKVQEMISEVERTAALPSRENISRAKLLVKGGAKRKESTFNLTQTVDTTILDIN 635

Query: 360 TSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYII 419
               + Q  L L  N+ ++N    + D   +E+   +  S++  +       Q +  +I+
Sbjct: 636 QQFESLQNALSLYANQTTSNSQDEALDSDGAEERLSLTISKS-DFAKMKIIGQFNLGFIL 694

Query: 420 -------------SQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLL 466
                         QT D + I+DQH++ E+  FE+++       + SQ L+ P+ + L 
Sbjct: 695 ASKAPELTTENSGIQTADNVFIIDQHSSDEKYNFERLQATTI---VQSQRLVYPKTLSLT 751

Query: 467 EGECALIMEHDEDLHRLGIKA 487
             E  ++ E+ + L + G   
Sbjct: 752 ALEEEIVAENLDILEQNGFVL 772


>gi|322789362|gb|EFZ14674.1| hypothetical protein SINV_12209 [Solenopsis invicta]
          Length = 818

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 99/270 (36%), Gaps = 42/270 (15%)

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE-ESEATHYQLGIACAQIHQNYII 419
           S  +  + +   EN      ++             +  ES      +     +     + 
Sbjct: 540 SFDSPNDTILFTENWQHEQAMVHPCKLKQKLCEFRLSRESLKYIKVINQVNDEFIAALMT 599

Query: 420 SQTTDGLVIVDQHAAHERLIFEKMRQDF---NSTKITSQTLLTPEIIDLLEGECALIMEH 476
                 L+++DQHA HER+ +E +   +   N +++ S  L  P  ++       L++ +
Sbjct: 600 YNKMKILLMIDQHAVHERIRYENLLLRYKVQNESELLSFNLRDPLSMEFPTEMYNLLLRN 659

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKN-----------IPQLLRDIIDEIIDSST 525
              L + GI       N + IR IP  L   +           I  LL D++     ++ 
Sbjct: 660 KTLLKKYGINLGSSKENTLLIRTIPQCLVTNSDSYNNEKILPKIYGLLNDVLKNRDITNQ 719

Query: 526 TYTLQDRIENILATMACYG--------------------------SIRSGRKMQSIEMNR 559
              L   I N +A+ AC+G                          +I+ G K+   +   
Sbjct: 720 ANALPLTIHNAIASEACHGIYLTIFPIFLFLLIFFINLFFSNFSGAIKFGDKLILEQCKS 779

Query: 560 LLREMEKNPNSSQCNHGRPTFIK-LKLSDI 588
           L++ ++     ++C HGRPT I  ++ S++
Sbjct: 780 LIKLLKLTKFPNRCAHGRPTIIPVMEFSEL 809



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 125/350 (35%), Gaps = 49/350 (14%)

Query: 10  IINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
            I+ IA+ E        I ELI NSL++ ++ +   I   GK   Q+ DNG G+  + + 
Sbjct: 14  TISNIASFE------QCISELIANSLNSRAAAIAVRI-HAGKRKIQVVDNGVGIPKDMLR 66

Query: 70  MAVQRHCTSKISDDFSNIHTF---GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISG 125
              +   T    DD   +       +    L  I  +S  LT+ SR   +       +  
Sbjct: 67  CIAEAEAT----DDQQQVCELPQSNY----LADIRRLSDCLTIASRYQYSKETFMKVLLE 118

Query: 126 EKISSVRPVAM-------NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                     +       + GT V V           + +  ++ +T++I  +I  +A+ 
Sbjct: 119 TAFEMGFASNLIPIEQRPSCGTTVSVYGF--------HEIPCKKWDTSIICFLIAAIAVT 170

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQGY 236
             +VSF+    +  +  +     +    E +  + G+D   N V              GY
Sbjct: 171 KLEVSFSIRDEEQKKVVLRIAKPHSPV-EVLKTLFGKDLTLNHVWSIQCSPECNTNYHGY 229

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP--------LGRYPVVVLLL 288
            G+   N       ++F+N R +    IL  I+ A+ E             +   ++  L
Sbjct: 230 VGLSDKNA----MQWIFLNHRPIYCPLILKFIQIAFKERFNLSSNALDLCEKNIFILFFL 285

Query: 289 EIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
               ++    +   K  I F +   I N I   I K++ K+   ++    
Sbjct: 286 TFSEKEFTFVIENEKRCIMFYDMQKILNPIKNCIFKSLAKEATVSAITPY 335


>gi|254435728|ref|ZP_05049235.1| MutL C terminal dimerisation domain family [Nitrosococcus oceani
           AFC27]
 gi|207088839|gb|EDZ66111.1| MutL C terminal dimerisation domain family [Nitrosococcus oceani
           AFC27]
          Length = 322

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 135/347 (38%), Gaps = 40/347 (11%)

Query: 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
            V+DK +    R AY   +  GR+P  +L LE+   QVDVN HPAK  +RFR    +  F
Sbjct: 1   MVRDKLLSHAARQAYGNRLSQGRHPAYLLYLELPTHQVDVNAHPAKHEVRFRESRQVHGF 60

Query: 318 IIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLS 377
           I++++ + + +                   +   +    ++ +       K    +  L 
Sbjct: 61  IVRTLAEILEQT----------------EPEGEHRLASGEFRSHPHEVLGKEQAGDTYLV 104

Query: 378 TNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHER 437
                      + + N   +       + G   A +   Y++++ + GL++VD   A   
Sbjct: 105 AEVPGSYGPRKHGKHNPLSKGRNDAPSRFGQVQAFVLGRYLLTENSQGLMLVDLPIARAH 164

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
           L   ++R  + +  I  Q LL P    +   +      H ++L +LG+   R GP  + +
Sbjct: 165 LAQARLRTAYAAGHIIRQPLLLPLTFQVSLQQAEWTERHVQELRKLGLGLHRLGPQTVVL 224

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI---ENILATMACYGSIRSGRKMQS 554
           REIPA + + ++  LL         +   + +   I   E I+A  A Y +  + R    
Sbjct: 225 REIPAAIRELDLEGLLL--ALLAQLTRQQHIMPAEIPLGELIVALTAQYPASTTSRP-SL 281

Query: 555 IEMNRLLREMEKN---------PNSSQCNHGRPTFIKLKLSDIEKLF 592
            EMN  L+E+E           P             +L   +I + F
Sbjct: 282 QEMNAFLQELENLYQIETGLKAPLPW---------RELPEHEIAQWF 319


>gi|62089282|dbj|BAD93085.1| MutL protein homolog 1 variant [Homo sapiens]
          Length = 552

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 76/197 (38%), Gaps = 4/197 (2%)

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
             V    G     R  F+ I  R   LK+   E   I +V+ R ++    +SF+      
Sbjct: 5   NHVLAIKGPRSRWRTFFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGE 64

Query: 192 NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE--ITLQGYTGIPTFNRGNANQ 249
               +          + I  + G       +E+  +       + GY     ++      
Sbjct: 65  TVADVRTLPNASTV-DNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANYSVKKCIF 123

Query: 250 FYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFR 309
             +FIN R V+   +   I T YA  +P   +P + L LEI P+ VDVNVHP K  + F 
Sbjct: 124 L-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFL 182

Query: 310 NPTIIRNFIIQSIQKAI 326
           +   I   + Q I+  +
Sbjct: 183 HEESILERVQQHIESKL 199


>gi|237668106|ref|ZP_04528090.1| DNA mismatch repair protein MutL [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237656454|gb|EEP54010.1| DNA mismatch repair protein MutL [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 76

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 531 DRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           +   N +AT AC  +I+   ++Q  EM +L+ ++    +   C HGRP  IK   +DI+K
Sbjct: 11  EVKHNAIATKACKSAIKGNDELQINEMVKLIEDLRYIDDPFHCPHGRPIIIKFTSTDIDK 70

Query: 591 LFGR 594
            F R
Sbjct: 71  KFKR 74


>gi|241152208|ref|XP_002406860.1| DNA mismatch repair protein mlh3, putative [Ixodes scapularis]
 gi|215493957|gb|EEC03598.1| DNA mismatch repair protein mlh3, putative [Ixodes scapularis]
          Length = 232

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 75/196 (38%), Gaps = 20/196 (10%)

Query: 404 YQLGIACAQIHQNYIISQTTDGLVIVDQHA---AHERLIFEKMRQDFNSTKITSQTLLTP 460
              G   A +      +   +        A     +    ++ +    S  + S +L  P
Sbjct: 1   MYAGNWMAWVDVTSGQTMYINVTSGNSAFAPLPCFKEDHQDQYKDKQGSC-LKSSSLKPP 59

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKN------------ 508
             I L           +++L +LG+     G   + +  +P+ L +++            
Sbjct: 60  LSIALDPDVARRAAVCEKELRKLGVHFGAIGQQGLVLERLPSCLVERDDSERRCGRPSTI 119

Query: 509 ---IPQLLRDIIDEIIDSSTTY-TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
                +LLR+  + ++ +  +  +L   + ++L++ AC G+I+ G  +   E  ++L  +
Sbjct: 120 ATQAQELLREHTEVLLSTRRSAISLPKVLLDVLSSQACRGAIKFGSVLDLSECRKILAAL 179

Query: 565 EKNPNSSQCNHGRPTF 580
            +     QC HGRP+ 
Sbjct: 180 SRCSLPFQCAHGRPSL 195


>gi|255949788|ref|XP_002565661.1| Pc22g17480 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592678|emb|CAP99036.1| Pc22g17480 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 961

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDNG 60
           IR L   +I ++ +   I   +  I EL++NSLDA +    V      GG     + D+G
Sbjct: 8   IRALPSDVIAKVKSSTSIVHLTGVILELVKNSLDANAHTVFVTVDFKRGGC---IVEDDG 64

Query: 61  FGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
            G+   E  +     + H TSK +     +  +G RG  L S+ ++S LT+ SR   +  
Sbjct: 65  EGIPPVEFEVTGGLGKPHHTSKFN--LGGL--YGHRGLFLASLASLSLLTVTSRHIDHGC 120

Query: 118 GAQIAISGEK--------ISSVRPVAMNPGTIVEVRDLFFTIPAR 154
              I +                   +++ GT V V DLF  +P R
Sbjct: 121 TNSIILHHSTPVARLTPAPPHHALRSVDHGTSVTVNDLFGNMPVR 165



 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/411 (14%), Positives = 128/411 (31%), Gaps = 68/411 (16%)

Query: 238 GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPR-QVD 296
                +  +           T+  K     IR+     +P G  P   ++  IDP   + 
Sbjct: 510 SSLLIHPKHKPNRRDDGQECTILPKPPYERIRSGDKGDLP-GDSPSDKMITWIDPHTNLA 568

Query: 297 VNVHP-----AKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAP 351
             ++P       S           + + +  +K +    I   ++L      SF +   P
Sbjct: 569 YMINPRTGQTMNSRKSLATQRSPTDCVERPSKKPVQTFWI--DNMLGAWDNPSFSRTEIP 626

Query: 352 KTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACA 411
             +L   A    +T          + + D               +E ++           
Sbjct: 627 IPNLGAEAAGQQSTATSSHDCFKGIGSLDTAQVAKYRGKLQRHALETADVIAQVDRKFIL 686

Query: 412 QIHQNYIISQTTDG-----LVIVDQHAAHERLIFEKMR----------QDFNSTKITSQT 456
              +   I++  +G     L+++DQHAA ER   E++           +++ S       
Sbjct: 687 AKVRTAPITRNLEGPSNDVLLLIDQHAADERCRIEQLFGEMFVSAGLGENWESGARVRTV 746

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNA----IAIREIPAILSKKN--IP 510
            +     ++   E  L  ++       GI+    G       I I  +P +++++    P
Sbjct: 747 QVVSLAFEVSLTEGDLFQKYTSFFSTWGIEYATQGKTNSTALITIHTLPVLIAERCRLEP 806

Query: 511 QLLRDII---------------------DEIIDSSTTYTL-----------------QDR 532
            +L D++                     ++ I+ S +  +                    
Sbjct: 807 HVLIDLMRREIWSSEEDGNKPFLSKRTFEQDIELSDSDDVVHQRSASRSWVQRMNGCPQG 866

Query: 533 IENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           I ++L + AC  +I     +   E   L+  + +     QC H RP+ + +
Sbjct: 867 IVDLLNSRACRTAIMFNDPLNIDECQALVSSLARCAFPFQCAHARPSMVPI 917


>gi|323445867|gb|EGB02269.1| hypothetical protein AURANDRAFT_35408 [Aureococcus anophagefferens]
          Length = 161

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFG----PNAIAIREIPA 502
           +  T++ +Q LL P  +DL   E   ++E    + R+G +            +A+  +P+
Sbjct: 4   WRDTRVDTQPLLAPLSLDLGATEELALLERRCTVERVGFRLAVNDLAPPGRRVAVISVPS 63

Query: 503 ILSKKNIPQLLRDI---IDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNR 559
                     +R++   +D+     T      ++  + A+ AC  ++  G  +   +M +
Sbjct: 64  ARGTTFGVSDIRELITLLDDDAAHDTPLPKLPKLHTLFASKACRAAVMIGTPLIKTKMTQ 123

Query: 560 LLREMEKNPNSSQCNHGRPTFIKL 583
           LL  +        C HGRPT   L
Sbjct: 124 LLDHLATLLQPWNCPHGRPTTRHL 147


>gi|1304124|dbj|BAA07513.1| PMS7 [Homo sapiens]
 gi|1407580|dbj|BAA07474.1| hPMS7 [Homo sapiens]
          Length = 161

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 39/67 (58%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I+ +  K ++QI +G ++   S A+K+++ENSLDA ++ ++  +   G    +++ NG G
Sbjct: 4  IKPIDRKSVHQICSGPVVLSLSTAVKKMVENSLDAGATNIDLKLKDYGMDLIEVSGNGCG 63

Query: 63 MTSEEIP 69
          +  E   
Sbjct: 64 VEEENFE 70


>gi|121706550|ref|XP_001271537.1| DNA mismatch repair protein (Mlh3), putative [Aspergillus clavatus
           NRRL 1]
 gi|119399685|gb|EAW10111.1| DNA mismatch repair protein (Mlh3), putative [Aspergillus clavatus
           NRRL 1]
          Length = 913

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 84/259 (32%), Gaps = 43/259 (16%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDN 59
           KIR L    + +I +   I   +  I EL++N+LDA +    V   I  GG     + D+
Sbjct: 7   KIRPLPPDAVAKIKSSTSITHLNGVIVELVKNALDANARTVFVTVDIQRGGC---MVEDD 63

Query: 60  GFGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL---------- 106
           G G+   E        + H TSK+     N         A+   G               
Sbjct: 64  GDGIPPSEFGSQGGLGKAHHTSKLH--LQN---------AVH--GQSGSFLASLASLSLL 110

Query: 107 TLMSRPPQNNTGAQIAISGEKIS--------SVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           T+ S   + ++   I                +        GT V V DLF  +P R   +
Sbjct: 111 TVTSHHFREDSTNSIIFHHSTPIARLTPAPATHHLRFSGHGTCVTVNDLFGNMPVR---V 167

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
           KS  +      D + R      ++            K+   +T       I   +G    
Sbjct: 168 KSRALALQK-LDELERQWDDLRQLLIALMLANDGLTKLVVLTTGEERRLMIRSQLGNQGA 226

Query: 219 NNAVELNEKSNEITLQGYT 237
              V++   ++ +T  G  
Sbjct: 227 TGEVDMLRITSILTQAGLL 245



 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT-----PEIIDLLEGECAL 472
              ++   L++VDQHAA ER   E +     +    S   +      P   ++   E +L
Sbjct: 667 DAQRSRSSLILVDQHAADERCRVEHLFGGLFADNDNSLCPIHTIRIDPITFEIPLTEASL 726

Query: 473 IMEHDEDLHRLGIKAE----RFGPNAIAIREIPAILSKKN--IPQLLRDIIDEIIDSSTT 526
             ++   L   G+         G   + +  +P +++++      L+ D+I   I     
Sbjct: 727 FGQYAGVLASWGVGYTVTQGPGGRATVHVGFLPTLIAERCRVENSLVIDLIRSEIWQRED 786

Query: 527 YTL----------------------------QDRIENILATMACYGSIRSGRKMQSIEMN 558
                                             I ++L + AC  +I     +   E  
Sbjct: 787 ERHGPLTVEMRSREEAARDIEPRWVDRLQACPRGIIDLLNSRACRTAIMFNDVLTVDECQ 846

Query: 559 RLLREMEKNPNSSQCNHGRPTFIKL 583
            L+  + +     QC HGRP+ + +
Sbjct: 847 SLVSRLRQCVLPFQCAHGRPSMVPI 871


>gi|167519609|ref|XP_001744144.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777230|gb|EDQ90847.1| predicted protein [Monosiga brevicollis MX1]
          Length = 765

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITDN 59
           K+R L   +  ++    ++   ++ + EL+ N+LDA ++RV     +         + DN
Sbjct: 6   KVRPLPADLAARLGDAYVLSDVTVLVAELLANALDAGATRVVVHTALDEA---LVVVRDN 62

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
           G G+  +++ +  Q   +SK+        T GFRG+AL +I     L++ SR PQ+ 
Sbjct: 63  GHGLRHDDLQLLGQAVASSKLPTTAQA-QTHGFRGQALRAIAQCCCLSIKSRDPQSG 118



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 29/198 (14%)

Query: 359 ATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI 418
            +S +NT +  FL   +L    L              V         +G   A+     +
Sbjct: 437 PSSASNTPQPRFLNLPKLPRGALQNIRLNNEHLHQTRV---------VGQLDAKFLCCTV 487

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT--SQTLLTPEIIDLLEGECALIMEH 476
                  L ++DQHAAHER++ E+   +   T      Q +  P    L           
Sbjct: 488 PIPDGRLLYVIDQHAAHERIMLEQFLANDTQTGDRGLQQPITIPLAEPLSVEMVPWPFHS 547

Query: 477 DEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENI 536
              L+  G                  +   +     L +    ++ +     L   + ++
Sbjct: 548 TAWLNMYGK----------------CMKQYQCCGNWLNEWTSTML-TGELGLLPS-LRDM 589

Query: 537 LATMACYGSIRSGRKMQS 554
           + T AC  +I+ G ++  
Sbjct: 590 ICTRACRAAIKFGDQLTL 607


>gi|258566177|ref|XP_002583833.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237907534|gb|EEP81935.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 962

 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 71/189 (37%), Gaps = 38/189 (20%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDN 59
            I+ L  K+  QI +   I   + AI  L++NSLDA++  +   +    GG +   + D+
Sbjct: 7   SIQPLPSKVAAQIESSTSITSLNGAILGLVKNSLDADAQTITITVDFQKGGCT---VEDD 63

Query: 60  GFGMT------SEEIPMAVQR----------------HC-TSKISDDFSNIHTFGFRGEA 96
           G G+          +    ++                H  TSK   D      +G +G  
Sbjct: 64  GTGIPAFEFGEKGNLGKLHRKQYQTNSSSQDVSINALHADTSKF--DCPQ-EVYGHKGIF 120

Query: 97  LPSIGAVSHLTLMSRPPQNNTGAQIAISG-------EKISSVRPVAMNPGTIVEVRDLFF 149
           L S+ +++ +T+ SR    ++   +               +        GT V V DLF 
Sbjct: 121 LSSLISLALVTITSRIGSYSSTNSVTYHHSTAISRLCPAPAQHEFTSEHGTKVTVTDLFG 180

Query: 150 TIPARLNFL 158
            +P R+   
Sbjct: 181 NLPVRVKHR 189



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 43/176 (24%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTK----ITSQTLLTPEIIDLLEGECALIMEHD 477
             + LV+VDQHAA ER+  E++  D   +     + + +L TP    +   E  L     
Sbjct: 760 PQEILVLVDQHAADERVHTERLFGDLCGSSPLCPVDTTSLPTPIRFRVSTEEARLFKSQY 819

Query: 478 EDLHRLGIKAERFGPN-----AIAIREIPAILSKKN--IPQLLRDII-DEIIDSSTTYTL 529
           +     G        +      + +  +PA++S++    P+L  D++  EI        +
Sbjct: 820 DYFASWGCCYSVSKADSSQHATVEVTALPALISERCRVEPKLAIDMLRSEIWGHKDGELI 879

Query: 530 -------------------------------QDRIENILATMACYGSIRSGRKMQS 554
                                             I ++L + AC  +I     +  
Sbjct: 880 CRPKHLSSATLEKPENPGDDSPHWPQAISHCPRGIVDMLNSRACRSAIMFNDVLSK 935


>gi|289807731|ref|ZP_06538360.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 149

 Score =  100 bits (248), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           T +EV DLF+  PAR  F+++E+ E N I ++IRR+A+A   V+   S       +    
Sbjct: 1   TTLEVLDLFYNTPARRKFMRTEKTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYRAV 60

Query: 200 STNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGN-ANQFYVFINGRT 258
           + +G    R+  + G  F+  A+ +  +  ++TL+G+   P           Y ++NGR 
Sbjct: 61  AKDGQKERRLGAICGTPFLEQALAIEWQHGDLTLRGWVADPNHTTTALTEIQYCYVNGRM 120

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLL 287
           ++D+ I   IR A  + +   + P  VL 
Sbjct: 121 MRDRLINHAIRQACEDKLGADQQPAFVLY 149


>gi|4495202|emb|CAB39253.1| hexB [Streptococcus pneumoniae]
 gi|4495206|emb|CAB39255.1| hexB [Streptococcus pneumoniae]
 gi|4495210|emb|CAB39257.1| hexB [Streptococcus pneumoniae]
 gi|4495214|emb|CAB39259.1| hexB [Streptococcus pneumoniae]
 gi|4495218|emb|CAB39261.1| hexB [Streptococcus pneumoniae]
 gi|4495222|emb|CAB39263.1| hexB [Streptococcus pneumoniae]
 gi|4495226|emb|CAB39265.1| hexB [Streptococcus pneumoniae]
 gi|4495230|emb|CAB39267.1| hexB [Streptococcus pneumoniae]
 gi|4495234|emb|CAB39269.1| hexB [Streptococcus pneumoniae]
 gi|4495238|emb|CAB39271.1| hexB [Streptococcus pneumoniae]
 gi|4495242|emb|CAB39273.1| hexB [Streptococcus pneumoniae]
 gi|4495246|emb|CAB39275.1| hexB [Streptococcus pneumoniae]
 gi|6901008|emb|CAB71568.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901012|emb|CAB71570.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901014|emb|CAB71571.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901026|emb|CAB71577.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901256|emb|CAB71683.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901258|emb|CAB71684.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901260|emb|CAB71685.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901262|emb|CAB71686.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901264|emb|CAB71687.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901266|emb|CAB71688.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901268|emb|CAB71689.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901270|emb|CAB71690.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901272|emb|CAB71691.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901276|emb|CAB71693.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901278|emb|CAB71694.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901383|emb|CAB71753.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901391|emb|CAB71757.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901395|emb|CAB71759.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 117

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|56675837|emb|CAB71692.3| DNA mismatch repair protein [Streptococcus pneumoniae]
          Length = 138

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901002|emb|CAB71565.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901379|emb|CAB71751.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 117

 Score = 99.7 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  +S++ I   + +
Sbjct: 1   QLLVPYIFEFPADDVLRLKERMPLLEEVGVFLAEYGENQFILREHPIWMSEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901393|emb|CAB71758.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 117

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKQSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901004|emb|CAB71566.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 117

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL   I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVAYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901280|emb|CAB71695.1| DNA mismatch repair protein [Streptococcus pneumoniae]
          Length = 117

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLRERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|154316931|ref|XP_001557786.1| hypothetical protein BC1G_03883 [Botryotinia fuckeliana B05.10]
 gi|150845495|gb|EDN20688.1| hypothetical protein BC1G_03883 [Botryotinia fuckeliana B05.10]
          Length = 886

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 31/191 (16%)

Query: 426 LVIVDQHAAHERLIFEKMRQDF----------NSTKITSQTLLTPEIIDLLEGECALIME 475
           L I+DQHAA ER+  E +  DF           S  + +  L  P   D+   +  L   
Sbjct: 571 LAIIDQHAADERVRIEALLSDFLTYPTVSVAPASVSVVTTPLEKPLSCDISTKDSQLFRN 630

Query: 476 HDEDLHRLGIKAERFG-PNAIAIREIPAILSKKNI--PQLLRDIID----EIIDSSTTYT 528
           H +     GI         +I ++++P +++ +    P LL  I+        +  T++ 
Sbjct: 631 HKKHFSYWGIIYSVSPTGTSITVQQLPPLITARLAANPSLLLHILRTELYSYHEHPTSHP 690

Query: 529 --------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
                         +   I  +L + AC  +I    ++   E   L++ +        C 
Sbjct: 691 AITPESTWIERIAHIPKGILELLNSRACRTAIMFNDELGVDECRELVKRLANCKFPFMCA 750

Query: 575 HGRPTFIKLKL 585
           HGR + I L  
Sbjct: 751 HGRVSMIPLGE 761


>gi|4495113|emb|CAB39210.1| hexB [Streptococcus mitis]
 gi|6901018|emb|CAB71573.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901282|emb|CAB71696.1| DNA mismatch repair protein [Streptococcus pneumoniae]
 gi|6901373|emb|CAB71748.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901381|emb|CAB71752.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901387|emb|CAB71755.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901389|emb|CAB71756.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 117

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKERMALLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901140|emb|CAB71634.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 117

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLRERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGVYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901006|emb|CAB71567.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 117

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + +    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKKRMPLLEEVGVFLTEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|308810805|ref|XP_003082711.1| putative MLH1 protein (ISS) [Ostreococcus tauri]
 gi|116061180|emb|CAL56568.1| putative MLH1 protein (ISS) [Ostreococcus tauri]
          Length = 595

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 148/469 (31%), Gaps = 48/469 (10%)

Query: 112 PPQNNTGAQIAISGEKISSV--RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
                   + + +  K+     +P A  PGT + V +LFF +  R   LKS   E   I 
Sbjct: 2   ARGAAHATRCSYADGKMDRDGAKPCAGVPGTTISVENLFFNVVTRQKALKSASEEYAKIL 61

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN--------A 221
           +V++R A     V+FT      +R  ++      +  ER+  + G     +        A
Sbjct: 62  EVLQRYAALRTDVAFTCRKQGESRTTLHA-PVAESRVERLQAIYGPAVAKDLKTLEFDTA 120

Query: 222 VELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
               +   ++ + G      ++        +FIN R V+   +     + YA  +P    
Sbjct: 121 TSKKKFDFKLKIDGLISGGNYHSKRTTFI-LFINSRLVECAPLKRACESVYAAILPKAEK 179

Query: 282 PVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKM 341
           P + + L++    VDVNVHP K  ++F +   I   I   ++K +     + S  +   +
Sbjct: 180 PFIFMHLQLPFEDVDVNVHPTKQEVQFLHQDAIVEVIQSKVEKILLATNSTRSFTVQTLL 239

Query: 342 ISSFHQDNAPKTHLP---------------KYATSLTNTQEKLFLQENRLSTNDLLPS-- 384
             +                           +  T  T  +EK       + T+  L +  
Sbjct: 240 PGAERLGGGANAETSGDKENSVRDDGFGVTQAKTPKTTQREKAGGDHKLVRTDANLAAGS 299

Query: 385 -DDPTYSEDNDPVEESEATHYQLGIAC-----------AQIHQNYIISQTTDGLVIVDQH 432
            D       N   +E E                       + +   + +  + +      
Sbjct: 300 LDAYLQRAMNSEGKEHEKIQEVRRAVRERRGQRVEADDTYVCELTSVRELNEQIANAAHR 359

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
              E +    +    +  K          +  +   + +  M +   L         FG 
Sbjct: 360 ELGEIIKNHTLVGAVDGRKGVWLMQHQTRLYMVDAVKLSEEMFYQITLRN----FANFGS 415

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMA 541
            A+   E PA + +  +  L     +         T++   E I   +A
Sbjct: 416 QAL---ERPAPIPELALCALKDKFAEPNSWDDADGTMEQVAEKIADMLA 461


>gi|6901128|emb|CAB71628.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901132|emb|CAB71630.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 117

 Score = 98.2 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLRERMPLLEEVGVFLAEYGANQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKKV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901377|emb|CAB71750.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 117

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKERMPLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANYRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901122|emb|CAB71625.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901126|emb|CAB71627.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901130|emb|CAB71629.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901136|emb|CAB71632.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901138|emb|CAB71633.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 117

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L   G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPVDDALRLRERMPLLEEAGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|6901124|emb|CAB71626.1| DNA mismatch repair protein [Streptococcus oralis]
          Length = 117

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLRERMTLLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           I D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  ICDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|4495123|emb|CAB39215.1| hexB [Streptococcus oralis]
 gi|6901010|emb|CAB71569.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901016|emb|CAB71572.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901022|emb|CAB71575.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901024|emb|CAB71576.1| DNA mismatch repair protein [Streptococcus mitis]
 gi|6901134|emb|CAB71631.1| DNA mismatch repair protein [Streptococcus oralis]
 gi|6901375|emb|CAB71749.1| DNA mismatch repair protein [Streptococcus sp.]
 gi|6901385|emb|CAB71754.1| DNA mismatch repair protein [Streptococcus sp.]
          Length = 117

 Score = 97.8 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + E    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLKERMTHLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++  ++      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHRIDDHSARQLLYQLSQCDNPYNC 117


>gi|74706073|sp|O95746|PM2LG_HUMAN RecName: Full=Postmeiotic segregation increased 2-like protein 16
 gi|4239956|dbj|BAA74756.1| PMS2L16 [Homo sapiens]
          Length = 92

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 38/67 (56%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I+ +  K ++QI +G ++   S A+K+++ NSLDA ++ ++  +   G    +++ NG G
Sbjct: 14 IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 73

Query: 63 MTSEEIP 69
          +  E   
Sbjct: 74 VEEENFE 80


>gi|4239954|dbj|BAA74755.1| PMS2L15 [Homo sapiens]
          Length = 148

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 38/67 (56%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I+ +  K ++QI +G ++   S A+K+++ NSLDA ++ ++  +   G    +++ NG G
Sbjct: 70  IKPIDRKSVHQICSGPVVLSLSTAVKKIVGNSLDAGATNIDLKLKDYGMDLIEVSGNGCG 129

Query: 63  MTSEEIP 69
           +  E   
Sbjct: 130 VEEENFE 136


>gi|294462532|gb|ADE76812.1| unknown [Picea sitchensis]
          Length = 150

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 45/140 (32%), Gaps = 32/140 (22%)

Query: 476 HDEDLHRLGIKA-ERFG---PNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT--- 528
           H +   + G    E           +  +P   +     + +++++  + D+    T   
Sbjct: 2   HLDTFRKNGFDFVEDTNAPPGRRFLLSAVPYSQNITFGLEDVQELLSILADAPAPPTSEV 61

Query: 529 -------------------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
                                       R+  +LA+ AC  S+  G  +   +M  +L+ 
Sbjct: 62  SDSLDCSDVCSNSYKKAIPQSISALCPSRVRAMLASRACRSSVMIGDALCKKDMETILQH 121

Query: 564 MEKNPNSSQCNHGRPTFIKL 583
           +    +   C HGRPT   L
Sbjct: 122 LSTLNSPWNCPHGRPTMRHL 141


>gi|291333859|gb|ADD93541.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C191]
          Length = 192

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 89/171 (52%), Gaps = 3/171 (1%)

Query: 158 LKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDF 217
           +KS   E      +++R+A+A P + F  +  +     ++      +   RI ++ GE+ 
Sbjct: 1   MKSTATELQHTQQLLQRLALAAPSIQFRLTHNQQMLLNLSQAP---DLEGRIQKLFGEEV 57

Query: 218 INNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIP 277
            +  + +  ++N+++ +G+  +P+  + +    Y+F+NGR V+   +   I   Y   + 
Sbjct: 58  RDGLMPVQHQANQLSFEGWISLPSKTKTSRRLQYLFVNGRHVKCPALNHGIYDGYKGLLA 117

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
            G++P   L +E+ P  VDVNVHPAK+ IRFRN  +I   +   + + I++
Sbjct: 118 KGKHPAYFLKVEVVPEDVDVNVHPAKTEIRFRNSQLIHTILADQLSRQIHE 168


>gi|145608202|ref|XP_360741.2| hypothetical protein MGG_03284 [Magnaporthe oryzae 70-15]
 gi|145015711|gb|EDK00201.1| hypothetical protein MGG_03284 [Magnaporthe oryzae 70-15]
          Length = 778

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 65/219 (29%)

Query: 430 DQHAAHERLIFEKMRQDF----NSTKITSQTLL-----TPEIIDLLEGECALIMEHDEDL 480
           + HAA ER   E +   +    +S   T+ + +      P +IDL   EC L+  +    
Sbjct: 544 NSHAADERCRVEALMAGYFEINDSNGNTTPSPVAEMLSVPVVIDLTRQECDLLEHYISHF 603

Query: 481 HRLGIKAERF---------------GPNA-------IAIREIPAILSKKN--IPQLLRDI 516
            R GI  E                 G N        + +  +P  + ++    P LL ++
Sbjct: 604 RRWGIWYEMISVTQPAMATTEGGRRGANQEQNRLKRVCVTRLPPSILERCRSEPSLLVEL 663

Query: 517 I-----------------------DEIIDSSTT---------YTLQDRIENILATMACYG 544
           +                         + +SS           +     I  ++ + AC  
Sbjct: 664 LRKEVWRLEEDETISRAALSIAGRASLRESSDEAEHSWVPWFHGCPPGILELIISRACRS 723

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           +I  G  +   +   LL  + K     QC HGRP+ + L
Sbjct: 724 AIMFGDSLSVEDCRALLDRLGKCAFPFQCAHGRPSMVPL 762



 Score = 91.7 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 111/328 (33%), Gaps = 50/328 (15%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M I+ L  ++  Q+ +  +I   +     L+ NSLDA +++V   +         + DNG
Sbjct: 1   MSIKPLPPEVAAQVKSSSVITSLNGVALGLLRNSLDANATKVNISV-DYRLGNCIVEDNG 59

Query: 61  FGMTSEEIPM---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT 117
           FG+   E        + H TS       N                 SH TL++   +  +
Sbjct: 60  FGVPETEFRDTGGLGKLHLTS--HHQRQN-----------------SHATLVTHNSELVS 100

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQ------VETNLITDV 171
               A+  ++I          GT V VRDLF ++P R+     E        +   +  +
Sbjct: 101 RHIPALPEQRILVF-----PHGTRVAVRDLFGSMPVRVKQRALEAARTGSGRDWGQLVRM 155

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI------SQVIGEDFINNAVELN 225
           +  + + +  ++        +   +  +S + +   R       + +     +   V L+
Sbjct: 156 VVSLLLGFTGIAAVTLRDMQSTRVLTLRSDSSSLISRTSRILSRAALWDNPDVAEWVPLS 215

Query: 226 EKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
             S  IT+ G   +      +    ++ ++   + D    + +     +     ++  + 
Sbjct: 216 ASSAGITIDGCVSLAPA--PSKKMQFITLDMEPISDDLKSNVLFDEINKVFANSQFGFIE 273

Query: 286 -LLLEIDPRQVDVNVHPAKSYIRFRNPT 312
            L  +     V       KS     N  
Sbjct: 274 DLHFDTSISAV-------KSEGAISNER 294


>gi|170091604|ref|XP_001877024.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648517|gb|EDR12760.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 783

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 59/217 (27%)

Query: 426 LVIVDQHAAHERLIFEKMRQD-------------FNSTKITSQTLLTPEIIDLLEGECAL 472
           LV+VDQHAA ER+  E   ++                  IT + L  P  + +   E  L
Sbjct: 535 LVLVDQHAADERIRVECFLKELCLGFLHYRDEGSSTEKGITQKELQPPLPVLVTRHEAIL 594

Query: 473 IME---HDEDLHRLGIKA------------ERFGPNA------IAIREIPA-----ILSK 506
           +          H  G +             + F   +      + +  +P      +L  
Sbjct: 595 LKASVGIQRAFHNWGFQFADLSKAANVNSDDVFADGSSSEYEQLLVCSVPEVVSEKLLQG 654

Query: 507 KNIPQLLRDII--------------------DEIIDSSTTYTLQDRIENILATMACYGSI 546
           + +  L++  +                    DE+            + +++ + AC G+I
Sbjct: 655 EELRDLVKSCLAYFQHSSDSSQITHSTNLRADELAWLGALRLCPKALLDLVNSKACRGAI 714

Query: 547 RSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
                +   +  RL+ ++ +     QC HGRP+ + L
Sbjct: 715 MFNDHLTVEQCQRLVYKLSQTSFPFQCAHGRPSLVPL 751



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 114/362 (31%), Gaps = 67/362 (18%)

Query: 138 PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF--------STI 189
            GT++ +RD F+ +P R     S      L+   I   AI +P V+F+         + +
Sbjct: 21  QGTVICIRDAFYNLPVRRLSHPSHIRTWELVRQEIETYAIVFPHVAFSLEDSRNARETDV 80

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP--------- 240
            + R +        +      ++ G     +  E++   + + + G+  +          
Sbjct: 81  NTFRDRNFRIPKTPSILSAFRRIYGRALTEHVEEIDATRDSMKVVGFISLNGSLSKARLG 140

Query: 241 -------TFNRGNANQFYVFI--NGRTVQDKFILSTIRTAY------------------- 272
                       +      FI  N R +   F++S+IR                      
Sbjct: 141 HPRNNGKKMTFCSNRLISFFISTNTRFLTAIFVVSSIRALALVHFPKMFILCSHPGVGTD 200

Query: 273 ---------AETI----PLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
                       +    P  +  V VL + + P  VD  + P+K+ ++F+    +   I 
Sbjct: 201 ATTIRALMKMGILAILAPTEKKAVYVLNVTLPPDHVDNIIEPSKTSVQFQ----VELCIS 256

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTN 379
           Q + K++    +  +       +SS  +    K             Q+    +  +L  N
Sbjct: 257 QGLLKSLIMGDMLKNRASILSFVSSVIKSFLMKHGFVLQRDIEPGPQDSPSRKRRKLEKN 316

Query: 380 DLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLI 439
                +D  + E N   E   + H +     +              ++  D    HE+ +
Sbjct: 317 ----FEDSGFMEGNHVSESPSSLHDRHTAEGSNSVLYTSTEDNPSDILWTDP-ITHEKFL 371

Query: 440 FE 441
            +
Sbjct: 372 VD 373


>gi|156043733|ref|XP_001588423.1| hypothetical protein SS1G_10870 [Sclerotinia sclerotiorum 1980]
 gi|154695257|gb|EDN94995.1| hypothetical protein SS1G_10870 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 618

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 31/191 (16%)

Query: 426 LVIVDQHAAHERLIFEKMRQDF----------NSTKITSQTLLTPEIIDLLEGECALIME 475
           LVIVDQHAA ER+  E +  +F           ST +++  L      D+   +  L   
Sbjct: 379 LVIVDQHAADERVRIEALLSEFLTPPTTSTIPASTSVSTSLLDKTVDFDISTKDSELFRT 438

Query: 476 HDEDLHRLGIKAERFGP-NAIAIREIPAILSKKNI--PQLLRDIID----EIIDSSTTYT 528
           +       GI          I ++ +P +++ + +  P LL  I+        +  T++ 
Sbjct: 439 YISHFSYWGIIYSVSPTATTITVQYLPPLITARLVANPNLLIHILRTELYSYHEHPTSHP 498

Query: 529 --------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCN 574
                         +   I  +L + AC  +I    ++   E   L++ +        C 
Sbjct: 499 TITPASTWIERISYIPKSILELLNSRACRSAIMFNDELGVDECKELVKRLANCKFPFMCA 558

Query: 575 HGRPTFIKLKL 585
           HGR + + L  
Sbjct: 559 HGRVSMVPLGE 569


>gi|71018795|ref|XP_759628.1| hypothetical protein UM03481.1 [Ustilago maydis 521]
 gi|46099386|gb|EAK84619.1| hypothetical protein UM03481.1 [Ustilago maydis 521]
          Length = 828

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 37/199 (18%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNST---KITSQTLLTPEIIDLLEGECALIMEHDE 478
               L  +DQHAA ER   E++ + +         +  L     + +   E A +  + +
Sbjct: 617 YFPILFCIDQHAADERYRLERLLEQYVDDCAAGTAAYNLPLTLTLPISVPEYARLQANAD 676

Query: 479 DLHR---LGIKAE-------RFGPNAIAIREIPAILSKK------------NIPQLLRDI 516
            + R   LG   +         G   + +  IP IL +K             +     D 
Sbjct: 677 LIARMKSLGWLVKTVVLIHASLGHAQVDLIGIPNILKEKTLTDSGRVKDQTLLQSAFADC 736

Query: 517 IDEIIDSS------------TTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREM 564
           +++I+ S+             +  + + +  +L + AC  +I    ++      R+++ +
Sbjct: 737 MEKILASNIKAVEASEDWLARSRWIPNSLMEVLKSRACRSAIMFNDRLGREVCERMVKRL 796

Query: 565 EKNPNSSQCNHGRPTFIKL 583
                   C HGRP  + L
Sbjct: 797 AACKFPFGCAHGRPVLVPL 815


>gi|85110020|ref|XP_963198.1| hypothetical protein NCU05385 [Neurospora crassa OR74A]
 gi|16944472|emb|CAC18267.2| related to dna mismatch repair homologue (hpms2) [Neurospora
          crassa]
 gi|28924866|gb|EAA33962.1| predicted protein [Neurospora crassa OR74A]
          Length = 867

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          M I+ L   +I QI +  +I   +  +  L+ NSLDA ++++   I    +    + DNG
Sbjct: 1  MSIQPLPGDVIAQIKSSTVITSLNGVVDGLLRNSLDASATKINISI-DYSRGNCSVEDNG 59

Query: 61 FGMTSE---EIPMAVQRHCTS 78
           G+      E     + H TS
Sbjct: 60 LGIPPACFREEGGLGKLHYTS 80


>gi|325685741|gb|EGD27819.1| DNA mismatch repair protein MutL [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 263

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 9/229 (3%)

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
           K + Q  +  T     +     +       +     +   +        Y++++    L 
Sbjct: 38  KSWDQHVKEQTALPPFAGGEEAASPVTSKADQLLRQHLPALRLLGQMGGYLLAEHGGDLY 97

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           ++DQ AA  RL ++++       +   Q LL P + D    +   + +    L +LG++ 
Sbjct: 98  LLDQVAARRRLEYDQILASLEKDENYQQGLLEPLVFDFSVYDYQKLKDQLPLLRQLGLEM 157

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS-- 545
           E FG N + +   P  L K  +   +R+++D+++ S          +++L  +A   +  
Sbjct: 158 EDFGQNTLLMHSYPTWL-KGEVTVQVRELLDQLLSSRENDG-----KSLLKLVAAKAAES 211

Query: 546 -IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFG 593
            +     +   E   LL  ++   +  +   G+   ++L  +D+ KLF 
Sbjct: 212 NVSRRVNLTGAEAADLLLRLQTASDPYRDASGQVAVVRLSQNDLSKLFK 260


>gi|6901020|emb|CAB71574.1| DNA mismatch repair protein [Streptococcus mitis]
          Length = 117

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 456 TLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRD 515
            LL P I +    +   + +    L  +G+    +G N   +RE P  ++++ I   + +
Sbjct: 1   QLLVPYIFEFPADDALRLRKRMALLEEVGVFLAEYGENQFILREHPIWMAEEEIESGIYE 60

Query: 516 IIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQC 573
           + D ++ +    +++     +   M+C  SI++   +      +LL ++ +  N   C
Sbjct: 61  MCDMLLLTKEV-SIKKYRAELAIMMSCKRSIKANHHIDDHSARQLLYQLSQCDNPYNC 117


>gi|47198637|emb|CAF89461.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 88

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I+ L  ++  ++ +G  I      ++ELI NS+DAE++ V   +        Q+ DNG G
Sbjct: 1  IKCLPTEVQGKLRSGVAIPSLQQCVEELILNSIDAEATCVGVRMDLEAFK-VQVLDNGTG 59

Query: 63 MTSEEIPMAVQRHCTSKIS--DDFSNIH 88
          M ++ +     R+ TSK    +D  N+ 
Sbjct: 60 MDADNLERLGNRYHTSKCRRVEDLENLR 87


>gi|242065624|ref|XP_002454101.1| hypothetical protein SORBIDRAFT_04g024565 [Sorghum bicolor]
 gi|241933932|gb|EES07077.1| hypothetical protein SORBIDRAFT_04g024565 [Sorghum bicolor]
          Length = 102

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 504 LSKKNIPQLLRDIIDEIIDSS---------TTYTLQDRIENILATMACYGSIRSGRKMQS 554
              +++ +L+  + D   D S         T      R+  +LA+ AC  S   G  +  
Sbjct: 5   FGVQDVKELISMLADSQGDCSIISSYKLDTTDSVCPSRVRAMLASRACRMSTMIGDPLTK 64

Query: 555 IEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            EM ++L+ +    +   C HGRPT   L
Sbjct: 65  AEMKKILKNLTGLRSPWNCPHGRPTMRHL 93


>gi|123474762|ref|XP_001320562.1| ATPase [Trichomonas vaginalis G3]
 gi|121903370|gb|EAY08339.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 462

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 13/211 (6%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S++      N    E      +         + +I++   + L  +DQHAAHER+   K+
Sbjct: 257 SNENQKVTKNFDTNEVGDVVIRNLEYVCVWDRKFILATFQNKLYSIDQHAAHERINLSKL 316

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
            +   + +      L   ++       +   +  E L + G +      N   +  +P +
Sbjct: 317 MKRCFTERYP--KTLKRPMMIHESFGISFNEKSYECLRKWGWRF-----NCKEVTAVPCV 369

Query: 504 LSKK--NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
              +  +   +++  I     +     + D I + L T AC  +I+ G  +  I    L+
Sbjct: 370 CGVEIDDADGMIKYAIQ--CSTGNEPEIPDCILDALRTRACKTAIKFGEFIDEIRAKSLI 427

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+  +   + C HGR     +   D ++ F
Sbjct: 428 YELSISDRPNHCAHGRTVVAPI--LDFDRPF 456



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 70/200 (35%), Gaps = 26/200 (13%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           S    EL+ NS+DA +  +   +     +   +TD+G G+  + +     +      + +
Sbjct: 8   SAIASELVMNSIDANAQNITVTLDLL-LNQILVTDDGEGI--QNLNAVFIKGG----NTN 60

Query: 84  FSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
            + +     +       L  + ++  + ++S+        +       I +        G
Sbjct: 61  LNGVYKRNKSH------LSRLISICDVDILSKTKDGKIQRKTFGDEHYIDNYYE----SG 110

Query: 140 TIVEVRDLFFTIPAR---LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196
           T + +  +F     R       K++    N     I  +++ +P +SF      S + ++
Sbjct: 111 TTILLTKIFSNNLIRIKEFTDPKNKLSLINRFKRFICTISLRFPHISF--IIFSSCQNQI 168

Query: 197 NFQSTNGNFPERISQVIGED 216
                  +  +R  Q+ G  
Sbjct: 169 LNLPKVESLEKRFIQITGVK 188


>gi|311250896|ref|XP_003124344.1| PREDICTED: mismatch repair endonuclease PMS2-like [Sus scrofa]
          Length = 74

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%)

Query: 519 EIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRP 578
            + DS        R+  + A+ AC  S+  G  + + EM RL+  M +  +   C HGRP
Sbjct: 1   MLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMRRLVSHMGEMDHPWNCPHGRP 60

Query: 579 TFIKL 583
           T   +
Sbjct: 61  TMRHI 65


>gi|84784022|gb|ABC61976.1| MLH3-like protein [Trichomonas vaginalis]
          Length = 462

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 13/211 (6%)

Query: 384 SDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM 443
           S++      N    E      +         + +I++   + L  +DQHAAHER+   K+
Sbjct: 257 SNENQKVTKNFDTNEVGDVVIRNLEYVCVWDRKFILATFQNKLYSIDQHAAHERINLSKL 316

Query: 444 RQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAI 503
            +   + +      L   ++       +   +  E L + G +      N   +  +P +
Sbjct: 317 MKRCFTERYP--KTLKRPMMIHESFGISFNEKSYECLRKWGWRF-----NCKEVTAVPCV 369

Query: 504 LSKK--NIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
              +  +   +++  I     +     + D I + L T AC  +I+ G  +  I    L+
Sbjct: 370 CGVEIDDADGMIKYAIQ--CSTGNEPEIPDCILDALRTRACKTAIKFGEFIDEIRAKSLI 427

Query: 562 REMEKNPNSSQCNHGRPTFIKLKLSDIEKLF 592
            E+  +   + C HGR     +   D ++ F
Sbjct: 428 YELSISDRPNHCAHGRTVVAPI--LDFDRPF 456



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 74/207 (35%), Gaps = 27/207 (13%)

Query: 17  GEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            E+I+  S    EL+ NS+DA +  +   +     +   +TD+G G+  + +     +  
Sbjct: 2   SELIDH-SAIASELVMNSIDANAQNITVTLDLL-LNQILVTDDGEGI--QNLNAVFIKGG 57

Query: 77  TSKISDDFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
               + + + +     +       L  + ++  + ++S+        +       I +  
Sbjct: 58  ----NTNLNGVYKRNKSH------LSRLISICDVDILSKTKDGKIQRKTFGDEHYIDNYY 107

Query: 133 PVAMNPGTIVEVRDLFFTIPAR---LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                 GT + +  +F     R       K++    N     I  +++ +P +SF     
Sbjct: 108 E----SGTTILLTKIFSNNLIRIKEFTDPKNKLSLINRFKRFICTISLRFPHISF--IIF 161

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGED 216
            S + ++       +  +R  Q+ G  
Sbjct: 162 SSCQNQILNLPKVESLEKRFIQITGVK 188


>gi|221507841|gb|EEE33428.1| DNA mismatch repair protein, putative [Toxoplasma gondii VEG]
          Length = 1131

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 528 TLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
               ++  ILA+ AC  +I  G  +   +M  +L+ +        C HGRPT   L
Sbjct: 832 CRPKKVWEILASRACRSAIMIGDSLTVNQMQTVLKNLATLHLPFNCPHGRPTVRHL 887


>gi|312087399|ref|XP_003145457.1| hypothetical protein LOAG_09882 [Loa loa]
 gi|307759381|gb|EFO18615.1| hypothetical protein LOAG_09882 [Loa loa]
          Length = 86

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
          +I  +  ++  +I  G++I   + A KELI+NSLDA++  +E  +   G    ++ D+G 
Sbjct: 12 RIHAIPAEVCRKICTGQVIITLAGACKELIDNSLDAQAKTIEIRVKKMGFERVEVIDDGT 71

Query: 62 GMTSEEIPMAV 72
          G+ S       
Sbjct: 72 GIHSLNFDALC 82


>gi|260779984|gb|ACX50621.1| DNA mismatch repair protein [Bacillus amyloliquefaciens]
          Length = 71

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 513 LRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQ 572
           + +II +++D+     ++   E     M+C GSI++ R +++ E+  LL ++ +  +   
Sbjct: 1   IEEIIQQVLDAKQID-IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFT 59

Query: 573 CNHGRPTFIK 582
           C HGRP  I 
Sbjct: 60  CPHGRPIIIH 69


>gi|313618987|gb|EFR90823.1| DNA mismatch repair protein MutL [Listeria innocua FSL S4-378]
          Length = 55

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 542 CYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           C  SI++   +   +M  LL  + +  +   C HGRP  I+    ++EK+F R
Sbjct: 1   CKKSIKANHYLTMQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKR 53


>gi|17861656|gb|AAL39305.1| GH18717p [Drosophila melanogaster]
          Length = 504

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 140/414 (33%), Gaps = 63/414 (15%)

Query: 151 IPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERIS 210
           +P R   L+S   E   +++V+ R A+  P+V FT       +  +       +  E I 
Sbjct: 1   MPQRRQALRSPAEEFQRLSEVLARYAVHNPRVGFTLRKQGDAQPALRT-PVASSRSENIR 59

Query: 211 QVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV-FINGRTVQDKFILSTIR 269
            + G       +E + +      +    I   N        + FIN R V+   + +++ 
Sbjct: 60  IIYGAAISKELLEFSHRDEVYKFEAECLITQVNYSAKKCQMLLFINQRLVESTALRTSVD 119

Query: 270 TAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI--- 326
           + YA  +P G +P V + L + P+ +DVNVHP K  + F     I + I Q ++  +   
Sbjct: 120 SIYATYLPRGHHPFVYMSLTLPPQNLDVNVHPTKHEVHFLYQEEIVDSIKQQVEARLLGS 179

Query: 327 -------NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLT---------------- 363
                   +  +  +  L +  ++   Q   PK  +   +T                   
Sbjct: 180 NATRTFYKQLRLPGAPDLDETQLADKTQRIYPKEMVRTDSTEQKLDKFLAPLVKSDSGVS 239

Query: 364 --NTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGI-------ACAQIH 414
             ++QE   L E          S +   S   D  +  E                   + 
Sbjct: 240 SSSSQEASRLPEESFRVTAAKKSREVRLSSVLDMRKRVERQCSVQLRSTLKNLVYVGCVD 299

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTK--ITSQTLLTPEIIDLLEGECAL 472
           +   + Q    L + +  +  E L +++M  +F +      S  L   E++ L     A 
Sbjct: 300 ERRALFQHETRLYMCNTRSFSEELFYQRMIYEFQNCSEITISPPLPLKELLILSLESEAA 359

Query: 473 IMEHDE-------------DLHR-------LGIKAERFGPNAIAIREIPAILSK 506
               ++              L +        G++    G     +  +P++L +
Sbjct: 360 GWTPEDGDKAELADGAADILLKKAPIMREYFGLRISEDG----MLESLPSLLHQ 409


>gi|58699799|ref|ZP_00374430.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533685|gb|EAL58053.1| DNA mismatch repair protein MutL-1 [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 209

 Score = 90.9 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 334 SSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDN 393
             V +++  S F      +   P       + Q K F   +           +    E  
Sbjct: 12  PDVQNERRPSPFENQLIKEFASPNEKAKGLSEQSKSF---DYTGIQKFPAQAEAMVLEKK 68

Query: 394 DPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
              +      + LG A  Q++  YII++  D L+IVDQHAAHERL++E ++     + I 
Sbjct: 69  VLEQVDLIESHPLGFARCQVYNTYIIAEVRDKLIIVDQHAAHERLVYECLK---QKSSIK 125

Query: 454 SQTLLTPEIIDL-LEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
            Q LL PE +++  +    +I  + + L  +G   E    N + ++EIPAIL   ++ ++
Sbjct: 126 RQKLLLPETVEIKNQAGMEMIEIYKDKLFEMGFDIEIKSENKVIVKEIPAILGAIDVKEM 185

Query: 513 LRDIIDEIIDSSTTYTLQDRIENI 536
           L +IID + +   T  ++D++  I
Sbjct: 186 LINIIDRLTEIEDTLPVEDKVNKI 209


>gi|332862597|ref|XP_001175192.2| PREDICTED: postmeiotic segregation increased 4-like protein-like,
           partial [Pan troglodytes]
          Length = 179

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG G+  E+      +H TSKI +  D + + TFGFRGEAL S+ A
Sbjct: 2   KLKDYGVDLIEVSGNGCGVEEEKFEGLTLKHHTSKIQEFADLTRVETFGFRGEALSSLCA 61

Query: 103 V-SHLT 107
           + S L+
Sbjct: 62  LRSQLS 67


>gi|331241530|ref|XP_003333413.1| hypothetical protein PGTG_15197 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309312403|gb|EFP88994.1| hypothetical protein PGTG_15197 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 956

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 71/224 (31%), Gaps = 66/224 (29%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPE------------------------ 461
           +V  DQHA HER+  E+   D  + +   + L T                          
Sbjct: 650 MVAFDQHAVHERIRVERFLHDLCTGQFNVKDLETKIDHHHQQEDQGDQAQGGLHSGSKFV 709

Query: 462 IIDLLEGECALIMEHDEDLHRLGIKAE----------------------RFGPNAIAIRE 499
            I +   E   +++  +  +R G   E                        G   I +R 
Sbjct: 710 PILVTRHEFDGLVKFKKLFNRWGFIYELTLTESDLTHGHNHNEEDDEDDDVGFKQIFMRA 769

Query: 500 IPAILSKKN---------IPQLLRDIIDEIID-----------SSTTYTLQDRIENILAT 539
           +P I+  +          +  +L+  +    D                     +  +L +
Sbjct: 770 VPEIIWHRFQCNDGRFEVLKNVLKGCLGFFEDRSSPSHPNSDWFGAVKDCPSVLVQLLNS 829

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
            AC GSI  G K+ + E  +LL E+ +      C HGRPT   L
Sbjct: 830 KACRGSIMFGDKLTNQESRKLLTELGRTRLPFSCAHGRPTCYPL 873



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/503 (14%), Positives = 153/503 (30%), Gaps = 78/503 (15%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L E  I  + +G  +   + A+K L+E S+ + ++ + + I         + DNG G
Sbjct: 31  IH-LDEHSIALLRSGVYLASFTHALKSLLEISIRSGANTISSSIDPA-TGTICVDDNGVG 88

Query: 63  MTSEEIPMAVQRHCTSKI---------SDDFSNIHTFGFRGEALP--------SIGAVSH 105
           +    +   + R  ++ +         S     I ++      L         S+  +S 
Sbjct: 89  ID-TGLVNLLGRFDSNSLVSAPSPNQSSSSQKQIVSY------LSVSQHRILDSLAHLSL 141

Query: 106 LTLMSRPPQNNTGAQIAISGEKISSVRPV----AMNPGTIVEVRDLFFTIPARLNFLK-- 159
           L + SR    +   Q       +    P       + GT   VRDLF  +P R       
Sbjct: 142 LDICSRHKDGSYSHQTLFRDGNVIFSAPAKTSRRHSHGTTTTVRDLFHNLPVRQIRENDP 201

Query: 160 -SEQVETNLITD----VIRRMAIAYPKVSFTFSTIKSNRYK---------MNFQSTNGNF 205
              Q       +    +++ +AI YP +SFT                       S  G F
Sbjct: 202 LRHQQRLRRQWEESRLILQSLAIVYPHISFTLRNSSHQNLTSSSSNSSASFYRISKTGLF 261

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGI------------------PTFNRGNA 247
                ++ G+ F+ +++ L    +   + G                      P+ +  + 
Sbjct: 262 SSTFGKIFGQQFVQDSIPLKVSIDGFQVTGLFSKKRHSSRAIQLIYLDRVLIPSNSLVHR 321

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETIP-------LGRYPVVVLLLEIDPRQVDVNVH 300
           +   +F   ++       +   +   +  P       + R+PV +L+    P+       
Sbjct: 322 SLANLFTGLQSEDISGSSAPQTSLSPKVSPLKNGASSVDRHPVYLLIFTSLPK--SNTSD 379

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
                + F +    ++ I Q+ +K         S V           +   K        
Sbjct: 380 DHNHAVHFLDEKE-QDLIPQTEEKINRIASQVFSQVFLPPKELPSSSNGQKKLQQESLVK 438

Query: 361 SLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIIS 420
               ++  +  +      +  +  + P      D        H     A +  H++ +  
Sbjct: 439 RTLQSRWPVTKRPRLTDPSPPISMNGPQSISLTDRFSAPSKKHIDRSAAKSVHHKSCVPK 498

Query: 421 QTTDGLVIVDQHAAHERLIFEKM 443
                   +D H    + + + +
Sbjct: 499 SKPH----LDLHKTKPKHLTKSL 517


>gi|299748042|ref|XP_002911246.1| hypothetical protein CC1G_14675 [Coprinopsis cinerea okayama7#130]
 gi|298407792|gb|EFI27752.1| hypothetical protein CC1G_14675 [Coprinopsis cinerea okayama7#130]
          Length = 419

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 74/309 (23%)

Query: 343 SSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEAT 402
            +   +   +      A  L+++ E  F + +         +     S D     +    
Sbjct: 99  PASTPEWLSRALKTNQAYQLSSSTEGPFAEPSFPVHRRRSDATQHVRSHDESAAMQISRD 158

Query: 403 HYQLGIACAQIHQNYIISQTTDG--------------------LVIVDQHAAHERLIFEK 442
             +      Q+ + +I                           +V+VDQHAA ER+  E+
Sbjct: 159 QLRQAQVINQVDRKFIACLVEVDFNGKKAGGMGASGSRASSTIMVLVDQHAADERIRVER 218

Query: 443 MRQDFN-------------STKITSQTLLTPEIIDLLEGECAL---IMEHDEDLHRLGIK 486
             +                S       L  P  + L + E +L              GI 
Sbjct: 219 FLRPLCIAFLRASAGRSEPSDGPVVTELPCPFPVLLTKHEASLLQRKETIQASFRNWGIS 278

Query: 487 AERFGPNAIA---------------IREIPAILSKK--NIPQLLRDIIDEIID------- 522
                  ++                +  +P++LS K   + + ++  + ++ +       
Sbjct: 279 FSEIPIESLTEASDSGTSKEYVQVFVTSLPSVLSDKGKELQECIKSFLGQLQEGEIRPYD 338

Query: 523 --------------SSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNP 568
                          S        +  +  + AC G+I     +   +  RL+ ++ +  
Sbjct: 339 AYFPGEATVGMEEWLSALRHCPRSLLELANSKACRGAIMFNDPLTREQCERLISQLAQAA 398

Query: 569 NSSQCNHGR 577
              QC HGR
Sbjct: 399 YPFQCAHGR 407


>gi|159484178|ref|XP_001700137.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272633|gb|EDO98431.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 86

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
          R L + ++++I  G  +     A+ EL+ NSLDAE+  V   +     SF  + D+G G+
Sbjct: 6  RPLPKPLVDKIRTGVTLNTVPQAVVELLCNSLDAEARTVLIKLNAATLSF-TVEDDGCGI 64

Query: 64 TSEEIPMAVQRHCTSKISD 82
           SE++ +   R+ TSK+  
Sbjct: 65 CSEDLELVGTRYYTSKLRS 83


>gi|118482038|gb|ABK92950.1| unknown [Populus trichocarpa]
          Length = 79

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
             R+  + A+ AC  S+  G  +   EM ++L  +    +   C HGRPT   L
Sbjct: 9   PSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHL 62


>gi|310128484|ref|XP_003120600.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 5,
           partial [Homo sapiens]
          Length = 496

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 25/251 (9%)

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLK 159
           + S +T+ +       G ++      KI    P     GT V V+ LF T+P R   F +
Sbjct: 13  SHSDVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQR 72

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDF 217
           + + E   +  V+    I    +  + +       +     T G+    E I  V G+  
Sbjct: 73  NIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQ 132

Query: 218 INNAVELNEK------------------SNEITLQGYTGIPTFNRGNA--NQFYVFINGR 257
           + + +   +                    N   + G+    T   G +  ++ + FIN R
Sbjct: 133 LQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRR 192

Query: 258 TVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF 317
                 +   +   Y       +YP VVL + +D   VD+NV P K  I  +   ++   
Sbjct: 193 PCDPAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAV 251

Query: 318 IIQSIQKAINK 328
           +  S+    + 
Sbjct: 252 LKTSLIGMFDS 262


>gi|302852295|ref|XP_002957668.1| hypothetical protein VOLCADRAFT_119750 [Volvox carteri f.
           nagariensis]
 gi|300256962|gb|EFJ41217.1| hypothetical protein VOLCADRAFT_119750 [Volvox carteri f.
           nagariensis]
          Length = 184

 Score = 88.6 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 491 GPNAIAIR-EIPAILSKKNI-PQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRS 548
           G +++ +   +P+I       P  LR  + ++ ++     L   +  +L + AC  +I  
Sbjct: 17  GNDSVQVLVSVPSICGTTLTNPTDLRLYLHQLDETGGAGLLPPAVLRVLRSKACRTAIMF 76

Query: 549 GRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           G  +   +   L+ ++      +QC HGRPT + L
Sbjct: 77  GDHLTPEQCTMLVAQLRDTRLWTQCAHGRPTVVPL 111


>gi|72384723|gb|AAZ67653.1| DNA mismatch repair protein putative [Haemophilus parasuis 29755]
          Length = 288

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 104/271 (38%), Gaps = 27/271 (9%)

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
           +P   YPV VL L++DP  VDVNVHPAK  +RF    ++ +FI Q +  A+  +     +
Sbjct: 1   LPKDHYPVFVLFLDLDPSHVDVNVHPAKHEVRFHQSRLVHDFIYQGVLNALEDQHHLPLT 60

Query: 336 VLSKKMISSF-----------------HQDNAPKTHLPKYATSLTNTQEKLFLQENRLST 378
               + + ++                 +++    +       S +NT+     +  +   
Sbjct: 61  TNVSEALPNYIADTNRVASGQNIFAHSYREPRSTSSTHAERQSYSNTRSSGVSKNEQKWY 120

Query: 379 NDLLPSDDPTYSEDNDPVEE-------SEATHYQLGIACAQIHQNYIISQTTDGLVIVDQ 431
            +LL +      + ++PV++       +                  ++ Q    +   + 
Sbjct: 121 GELLSTSPMQDYKRSEPVQDLPKTAKITPLVEPIAEPVTPYAQALAVVKQKALLMKQGET 180

Query: 432 HAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER-- 489
                     +++      K  +Q LL P  + L E + A   +    L  LG   +   
Sbjct: 181 FYLLSLEKLAQLKLQAELAKRENQALLIPLSLTLDEQQTASWQQSQTALADLGFDIQTKQ 240

Query: 490 -FGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
             G   + I+++P  L ++N+ QLL  + ++
Sbjct: 241 WQGQTRLTIQKVPTCLREQNLQQLLFSLFNQ 271


>gi|256073609|ref|XP_002573122.1| hypothetical protein [Schistosoma mansoni]
 gi|238658294|emb|CAZ29354.1| conserved hypothetical protein [Schistosoma mansoni]
          Length = 263

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 80/208 (38%), Gaps = 34/208 (16%)

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEII----------- 463
           + +  +     ++ VDQHAAHER++ E   ++  +    S      E             
Sbjct: 55  KKHGYTSKHLYIIAVDQHAAHERILLECFEKECLNYFEMSPNKAIHEPQFWKMFSNKISL 114

Query: 464 -----DLLEGECALIMEHDED--LHRLGI--KAERFGPNAIA-IREIPAILSKKNIPQ-- 511
                 + +    +  E  +   L + G     +         I  IP ++ + ++P+  
Sbjct: 115 KLSKESVPDIFNLVNREPAKLCCLSKYGFSATLDCNSMGQFIFITMIPRVIPQNHLPEKL 174

Query: 512 ---LLRDIIDEIIDSSTTYTLQDRIENILA------TMACYGSIRSGRKMQSIEMNRLLR 562
               +   I  I+ +     +      I A      + AC+ +IR G K+   +M +L+ 
Sbjct: 175 FSKTIISCIRVILLNKGEPNVNTIHHIIQAIHPLLESRACHQAIRFGSKLNKKQMEKLIV 234

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEK 590
           ++ +     QC HGRPT   +K+  I+K
Sbjct: 235 DLARCRIPFQCAHGRPTCTLIKM--IDK 260


>gi|114618511|ref|XP_001137891.1| PREDICTED: postmeiotic segregation increased 4-like protein-like
           [Pan troglodytes]
          Length = 118

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG G+  E+      +H TSKI +  D   + TFGFRGEAL S+ A
Sbjct: 57  KLKDYGVDLIEVSGNGCGVEEEKFEGLTLKHHTSKIQEFADVPQVETFGFRGEALSSLCA 116

Query: 103 V 103
           +
Sbjct: 117 L 117


>gi|169603728|ref|XP_001795285.1| hypothetical protein SNOG_04872 [Phaeosphaeria nodorum SN15]
 gi|160706445|gb|EAT87263.2| hypothetical protein SNOG_04872 [Phaeosphaeria nodorum SN15]
          Length = 930

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 55/213 (25%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTK----------------ITSQTLLTPEIIDLLEGE 469
           LV++DQHAA ER+  E + ++  S                  + S  L  P    +   E
Sbjct: 685 LVLIDQHAADERIRVEALLRELCSPMDTHCSGYQSKLGHRALVGSVMLENPPKFTVSRQE 744

Query: 470 CALIMEHDEDLHRLG--IKAERFGPNAI------------AIREIPAILSKKN--IPQLL 513
                 + +     G          N++             +  +P  +S++     QLL
Sbjct: 745 QLHFATYADRFASWGILFDFVDSATNSVKVVTSEEPSRLLCVTALPPGISERCQADAQLL 804

Query: 514 RDIIDE-----------------------IIDSSTTYTLQDRIENILATMACYGSIRSGR 550
              +                         +          + + +I+ + AC  +I    
Sbjct: 805 ISFLRTAVWKYANDLSLSTETSLPQPSQPLDWIGRLGHCPEGLVDIINSRACRSAIMFND 864

Query: 551 KMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
           ++   +   L++++        C HGRP+ + L
Sbjct: 865 ELDMHQSRGLVQKLATCAFPFVCAHGRPSMVPL 897



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I  L + ++ QI +   I   +  + EL++NSLDA +++VE  +    +    + D+G G
Sbjct: 14 ILPLPDDVVAQIKSSTAIVSLTDVVLELLKNSLDARATKVEASVDFA-RGACTVEDDGRG 72

Query: 63 MTSEEI 68
          +   E 
Sbjct: 73 IPPLEF 78


>gi|116196094|ref|XP_001223859.1| hypothetical protein CHGG_04645 [Chaetomium globosum CBS 148.51]
 gi|88180558|gb|EAQ88026.1| hypothetical protein CHGG_04645 [Chaetomium globosum CBS 148.51]
          Length = 540

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 86/231 (37%), Gaps = 8/231 (3%)

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
            +  T   +  + R A+    V+F+      +   +  Q+T     +RI Q+ G    N 
Sbjct: 47  PRTSTTRSSTWLGRYAVHCSNVAFSCKKHGESSTSIAVQATASGL-DRIRQIYGGSVANE 105

Query: 221 AVELNEK--SNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
             E +          +G      ++        +FIN R V+   I   I   Y+  +P 
Sbjct: 106 LTEFSTSDDRWAFKAEGLATNANYS-TKKTTILLFINHRCVESSNIRKAIEQTYSAFLPK 164

Query: 279 GRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS----TS 334
             +P V L LEIDP++VDVNVHP K  + F N   I   I + I+  +     S    T 
Sbjct: 165 NGHPFVYLSLEIDPQRVDVNVHPTKREVNFLNEDEIIQAICEHIRSKLAAVDASRTFLTQ 224

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
           S+L     S                +   +          R + N+L+ +D
Sbjct: 225 SLLPGGTWSGPIPSPHDSAVAAAAPSKTISGAAAARKTPARANENNLVRTD 275


>gi|291333860|gb|ADD93542.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C191]
          Length = 266

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 95/256 (37%), Gaps = 8/256 (3%)

Query: 341 MISSFHQDNAPKTHLPKYATSLTNT---QEKLFLQENRLSTNDLLPSDDPTYSEDNDPVE 397
            ++        K   PK   S+ N      KL   E + + ++             +  E
Sbjct: 15  PVAPSGASFRKKIASPKILESIPNEVSIPSKLVKSEIKSTESNQDLDFPEELKLFPNLAE 74

Query: 398 ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTL 457
           + E            +HQ+ I+ +  DGL + D H  H+ LI   + +      +     
Sbjct: 75  KPEQF-----KIIGMLHQSQILMEDEDGLAVGDVHTIHKLLIEVLLSKTVEENSVRLFEN 129

Query: 458 LTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDII 517
             P +++L   +  ++  H + L + G + + FG    +I  +P  L+ +    +L+D +
Sbjct: 130 EVPRLLELNAQDALILELHQKLLRQCGFQIDSFGGTTFSISSLPFPLAPEKCAGVLKDFV 189

Query: 518 DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGR 577
             +          +  ++++  +A + ++     +    MN L+ +ME+       + G 
Sbjct: 190 SRVSAFGKRAHESEIRKDLIQCIAQHAALDRQSSLNYRAMNLLIAQMEQLKLPPLNSSGE 249

Query: 578 PTFIKLKLSDIEKLFG 593
             +  +   ++ K   
Sbjct: 250 RLWFLIPKDELIKRLK 265


>gi|242050108|ref|XP_002462798.1| hypothetical protein SORBIDRAFT_02g032165 [Sorghum bicolor]
 gi|241926175|gb|EER99319.1| hypothetical protein SORBIDRAFT_02g032165 [Sorghum bicolor]
          Length = 101

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           I++L + + + + +  I+      I+ELI NS+DA +S+++  +      + ++ D+G 
Sbjct: 3  TIKRLPKSVHSSLRSSVILSDLPRVIEELIYNSIDANASKIDIAV-NIRACYVKVEDDGC 61

Query: 62 GMTSEEIPMAVQRH 75
          G+T +E+ +  +++
Sbjct: 62 GITRDELVLLGEKY 75


>gi|310128482|ref|XP_003120598.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 3,
           partial [Homo sapiens]
          Length = 616

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 87/248 (35%), Gaps = 25/248 (10%)

Query: 105 HLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQ 162
            +T+ +       G ++      KI    P     GT V V+ LF T+P R   F ++ +
Sbjct: 13  DVTISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIK 72

Query: 163 VETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINN 220
            E   +  V+    I    +  + +       +     T G+    E I  V G+  + +
Sbjct: 73  KEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQS 132

Query: 221 AVELNEK------------------SNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQ 260
            +   +                    N   + G+    T   G +  ++ + FIN R   
Sbjct: 133 LIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCD 192

Query: 261 DKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQ 320
              +   +   Y       +YP VVL + +D   VD+NV P K  I  +   ++   +  
Sbjct: 193 PAKVCRLVNEVYHMY-NRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKT 251

Query: 321 SIQKAINK 328
           S+    + 
Sbjct: 252 SLIGMFDS 259


>gi|149915516|ref|ZP_01904042.1| DNA mismatch repair protein [Roseobacter sp. AzwK-3b]
 gi|149810408|gb|EDM70251.1| DNA mismatch repair protein [Roseobacter sp. AzwK-3b]
          Length = 151

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 7/151 (4%)

Query: 158 LKSEQVETNLITDVIRRMAIAYPKVSFT---FSTIKSNRYKMNFQSTNGNFPERIS---- 210
           ++S++ E   I D++RR+A+A P V FT    S     R      +  G+  + +     
Sbjct: 1   MRSDRAEAQAIGDIVRRLAMADPFVGFTLRDVSGGGQGRMVFRAYAETGDMFDALHGRLG 60

Query: 211 QVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
           +++G DF +NA+ ++   + + + GY  +PT++RG+A   Y+F+NGR V+D+ ++  +R 
Sbjct: 61  RILGSDFADNALRIDATHDGLRMTGYAALPTYSRGSAVAQYLFVNGRPVRDRMMIGALRA 120

Query: 271 AYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
           AY + +   R+P   L +E DP  VDVNVHP
Sbjct: 121 AYMDVLSRDRHPAAALFVECDPMLVDVNVHP 151


>gi|325526068|gb|EGD03737.1| DNA mismatch repair protein [Burkholderia sp. TJI49]
          Length = 120

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRF 308
           Q Y F+NGR V+DK +   +R AY + +   RYP  VL L++ P  VDVNVHP+K  +RF
Sbjct: 2   QQYFFVNGRFVRDKLLTHAVRAAYEDVLHGDRYPSYVLFLDLPPEAVDVNVHPSKIEVRF 61

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R+   I  ++  ++Q+A+ +   ++    +     + H + +P+      AT L  +Q  
Sbjct: 62  RDSRSIHQYVFHAVQRALARHAGASPETTAGGH--AAHIEPSPRGPASFQATPLGQSQAA 119


>gi|156043737|ref|XP_001588425.1| hypothetical protein SS1G_10872 [Sclerotinia sclerotiorum 1980]
 gi|154695259|gb|EDN94997.1| hypothetical protein SS1G_10872 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 84

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
          M I+ L   ++ QI +   I   +  I EL++N LDA  S+++ V+    +    + DNG
Sbjct: 1  MSIQPLPLDVVAQIKSSSTITSLNAVIFELVKNCLDASCSKIDIVV-DFSRGDCTVEDNG 59

Query: 61 FGMTSEEI 68
           G+   E 
Sbjct: 60 LGILPSEF 67


>gi|114618407|ref|XP_001175196.1| PREDICTED: hypothetical protein [Pan troglodytes]
          Length = 118

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGA 102
            +   G    +++ NG+G+  E+      +H TSKI +  D   + TFGFRGEAL S+ A
Sbjct: 57  KLKDYGVDLIEVSGNGYGVEEEKFEGLTLKHHTSKIQEFADVPQVETFGFRGEALSSLCA 116

Query: 103 V 103
           +
Sbjct: 117 L 117


>gi|328850989|gb|EGG00148.1| hypothetical protein MELLADRAFT_112098 [Melampsora larici-populina
           98AG31]
          Length = 896

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 39/202 (19%)

Query: 426 LVIVDQHAAHERLIFEKMRQDF--------NSTKITSQTLLTPEIIDLLEGECALIMEHD 477
           +V+ DQHA  ER+  EK  +                 Q  +    + + E E        
Sbjct: 609 IVVFDQHAVDERIRVEKFLKQIILPELLVVKKIGKKGQDEIEGVRLRVSEVELEGFKRWK 668

Query: 478 EDLHRLGIKAER-------------FGPNAIAIREIPA--ILSKKNIPQLLRDIIDEIID 522
               R G   E               G   +  + +          + ++     +   +
Sbjct: 669 IRFKRYGFDYEIRRKEKEDEEEVWVIGLAEVVFKRLKKDGFFGLGEVMRMCLSFFESHQE 728

Query: 523 SSTTYT------------LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNS 570
                             L   +  I+ + AC GSI  G ++   E  RLL  + K    
Sbjct: 729 EKEKKVGRQKDWMNGMKFLPGVLIEIINSKACRGSIMFGDQLNHEECQRLLDGLWKTDEP 788

Query: 571 SQCNHG----RPTFIKLKLSDI 588
             C HG    RP    +   +I
Sbjct: 789 FYCAHGRMNCRPILNFMNPKEI 810



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 103/332 (31%), Gaps = 82/332 (24%)

Query: 2   KIRKLSEKIIN-------------------QIAAGEIIERPSIAIKELIENSLDAESSRV 42
            I+ L  K  +                   QI                   SL ++ + +
Sbjct: 8   SIQALDSKTSSLIKSSLSILSLKNLLESLLQI-------------------SLKSKPTLI 48

Query: 43  ETVIAGGGKSFFQITDNGFG--------MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRG 94
              +      + +I D+G G        + S    +   R    K++DD       G+R 
Sbjct: 49  SCSL-NLSSKYLRIDDDGIGFNKPSIYEILSNNESLPNSR----KMNDD-----DLGYRL 98

Query: 95  EALP-----SIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV----AMNPGTIVEVR 145
           E L      S+  ++ + + SR   ++   QI           P         G+ + +R
Sbjct: 99  EGLELQLFRSLVCLASVEICSRTEDSDETYQIIFQDGIRVFSGPAKTSRRHKTGSTLTIR 158

Query: 146 DLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS------------- 191
           +LF  +P R    + + Q +       ++ +AI +P V+F    ++              
Sbjct: 159 NLFHNLPVRSKQLIINHQQDFLECKRSLQLLAILHPNVNFNLHNLEHSLPGQSDGLVEHE 218

Query: 192 -NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                +  Q T+ +       +      +  +  N + +   ++G+         N +  
Sbjct: 219 FKESGVLIQKTHDSIITFGKILGPSLIKDAYIIENYEFDNYIVEGFLCKE--THLNKSGQ 276

Query: 251 YVFINGRTVQDKFILSTIRTAYAETIPLGRYP 282
            +F++G+ +    ++    +           P
Sbjct: 277 LIFLDGKLIPSTSLIYQRLSKSMSFSNNLGNP 308


>gi|118396563|ref|XP_001030620.1| hypothetical protein TTHERM_01044360 [Tetrahymena thermophila]
 gi|89284930|gb|EAR82957.1| hypothetical protein TTHERM_01044360 [Tetrahymena thermophila
           SB210]
          Length = 319

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 89/261 (34%), Gaps = 41/261 (15%)

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYI--- 418
           L N  + + L +   + N  +       +E+   + +       +               
Sbjct: 44  LENDYQDISLADRNQNFNQQIQIFSKQSNEEVQQISQVSKLDRTIFEDIEIFGNCNNKVI 103

Query: 419 --ISQTTDGLVIVDQHAAHERLIFEKMRQDFNST-------------------------- 450
              +Q    L  +DQHA HER+ +E     F ++                          
Sbjct: 104 ICFNQQKGMLFGLDQHAIHERIRYEYFCNQFKASAFCLQYKQSRNEIDSKCINLSQRNKD 163

Query: 451 ----KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI---KAERFGPNAIAIREIPAI 503
                I          ++L       + ++ + L +  I   K +    N   +   P +
Sbjct: 164 KQFPSILWFDQTRTNCLELDAYIFQRLQKNVDKLSQFKIQVVKIQNINQNKFEVYLWPQL 223

Query: 504 -LSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLR 562
            +  K I   L+  ID I++S   + + + I+ I+ + AC G+I+   ++   +M+ L++
Sbjct: 224 YILNKPITYDLK-FIDSILNSELGH-IPNTIDEIIMSKACKGAIKFNEELNQNQMDMLIK 281

Query: 563 EMEKNPNSSQCNHGRPTFIKL 583
            ++       C HGR +    
Sbjct: 282 NIKLCEFPFYCVHGRSSIHPF 302


>gi|145349851|ref|XP_001419340.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579571|gb|ABO97633.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 64

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 530 QDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKL 583
              +  +LA+ AC G+I  G  +   E   ++R +        C HGRPT   L
Sbjct: 1   PRPLHRLLASKACRGAIMFGDTLNRDECEAIVRALRLTQMPFACAHGRPTCAPL 54


>gi|328478647|gb|EGF48295.1| DNA mismatch repair protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 62

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 548 SGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           +   +   +   LL+++ +  N   C HGRP  +    +D+EK+F R
Sbjct: 4   ANHHLDDQQARALLQKLPQCENPFNCPHGRPVLVHFSNTDLEKMFKR 50


>gi|258617815|gb|ACV83924.1| DNA mismatch repair protein MutL [Arthrospira platensis PCC 7345]
          Length = 95

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD--DFSNIHTFGFRGEALPSIGAVSHLTL 108
           NG GM    +  A   H TSKI+   D   I + GFRGEAL SI  +S L +
Sbjct: 2   NGEGMDLVNLKRAAMAHSTSKIATARDLLKISSLGFRGEALHSIAQLSDLEI 53


>gi|301112222|ref|XP_002905190.1| hypothetical protein PITG_07252 [Phytophthora infestans T30-4]
 gi|262095520|gb|EEY53572.1| hypothetical protein PITG_07252 [Phytophthora infestans T30-4]
          Length = 209

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 85/210 (40%), Gaps = 22/210 (10%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKE----LIENSLDAESSRVETVIAGGGKSFFQI 56
           M +  L EK  + ++A   I     A+K+    +I NS+DA++  +   +     SF  +
Sbjct: 1   MALSFLDEKTRDLMSASYAIPDLETAVKQGQFVVIYNSIDAQAKTITLFVDVANASFTAV 60

Query: 57  TDNGFGMTSEEI-PMAVQRHCTSKI-------SDDFSNIHTFGFRGEALPSIGAV-SHLT 107
            D+G G+  +++     + + TS++        ++  +   +G RG  L  +  + +H+ 
Sbjct: 61  -DDGQGIQPDDLHEYIGECYATSRVPVSKCSRREEKPHKK-YGSRGAFLQELTTLAAHVE 118

Query: 108 LMSRPPQNNTGAQIAISGEKISSVRPV---AMNPGTIVEVRDLFFTIPARLNFLKSEQVE 164
           + SR  ++ T  +       +             GT V V +LF  +P R   L   +  
Sbjct: 119 IESRVQEHWTSYRKVFKEGAVVFNARSKELHKTAGTKVSVSNLFGKLPVRRKDLTRNRKY 178

Query: 165 TNLITDVIRR----MAIAYPKVSFTFSTIK 190
              +   I      M++ +P +SF      
Sbjct: 179 RFRVVQNIHNFCVSMSMIWPSLSFDIRYEG 208


>gi|170091606|ref|XP_001877025.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648518|gb|EDR12761.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 115

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
           I  L+     ++ + +I+      + EL++NSLDA + +++  +    +    + D+G G
Sbjct: 5   IEALNSSTRAKLRSTQILTSLPQIVSELLQNSLDAGACQIDIGL-DCEEWSCWVKDDGSG 63

Query: 63  MTSEEIPMA-----VQRHCTSKISDDFS--NIHTFGFRGE 95
           ++ + + +        R+ TSK        ++ TFGFRGE
Sbjct: 64  ISKDGLNIIGGDGGEGRYGTSKECAPGFMNSLSTFGFRGE 103


>gi|238606735|ref|XP_002396795.1| hypothetical protein MPER_02897 [Moniliophthora perniciosa FA553]
 gi|215470012|gb|EEB97725.1| hypothetical protein MPER_02897 [Moniliophthora perniciosa FA553]
          Length = 78

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGF 61
           I +L+     ++ + +I+      + EL++NSLDA++ R+E  +    +    +TD+G 
Sbjct: 5  PIEQLNPGTRAKLRSTQILTSLPQIVSELLQNSLDAKARRIEIGV-NCEEWTCWVTDDGQ 63

Query: 62 GMTSEEIPMAV-QRH 75
          GM+ +++ +   +R+
Sbjct: 64 GMSRDDLMLLGSERY 78


>gi|322828667|gb|EFZ32382.1| hypothetical protein TCSYLVIO_1277 [Trypanosoma cruzi]
          Length = 867

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 104/317 (32%), Gaps = 55/317 (17%)

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
            +R+ +  +I  ++      +   +      S   +N  +T  P  A  L    ++ FL 
Sbjct: 549 QVRSAMHLTIDPSLFAPRAYSGPSVW---PGSGEMENKERTPCPFRAKHLIAQWDRKFLL 605

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                  +   SD   + E   P   S      +G+      Q          L IVD H
Sbjct: 606 LQMNDVGEP--SDTSPFDEIGSPSSTSINGMPTMGVPPVLCKQPQSHYLPPPALYIVDPH 663

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----- 487
           A HERL  E        + +          + + E     +  +++ L R G +      
Sbjct: 664 AIHERLRLEFFLTT-AESYVRRDIGPISVPVHIPEEIRRDVTTYEDFLARWGWRFAHENL 722

Query: 488 ---------------ERFGPNAIAIREIPAILSKKNIPQL---------LRDII------ 517
                           +     +A+ + P +  + ++ QL         + +++      
Sbjct: 723 QCTGLRSAMASKSRYTQLSWCCVAVTQWPHLEIEGHVLQLETIDALRKTVEELVTVLPSW 782

Query: 518 --------------DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
                         D I ++     +   +   L T +C G++  G  + +  M +L+  
Sbjct: 783 QMPAATEKESSKECDWIGENPGARVVPSAVLEFLVTRSCRGAVMFGDSLSTATMVQLIGA 842

Query: 564 MEKNPNSSQCNHGRPTF 580
           ++     + C+HGRP+F
Sbjct: 843 LQAVEQYTLCSHGRPSF 859


>gi|309805581|ref|ZP_07699624.1| hypothetical protein HMPREF9213_0643 [Lactobacillus iners LactinV
          09V1-c]
 gi|308165082|gb|EFO67322.1| hypothetical protein HMPREF9213_0643 [Lactobacillus iners LactinV
          09V1-c]
          Length = 39

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAE 38
          KI KLS ++ NQIAAGE+IERP+  IKEL EN+LDA 
Sbjct: 3  KIHKLSSELTNQIAAGEVIERPASVIKELCENALDAG 39


>gi|313222326|emb|CBY39274.1| unnamed protein product [Oikopleura dioica]
          Length = 505

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 2/173 (1%)

Query: 155 LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG 214
                +       I DVIR  +I Y K++F+   I  ++ ++   +   +    I +   
Sbjct: 4   RQKSYNPNETFAKIADVIRAYSIHYEKLNFSLFRIDKSQTQVRSWNLP-DRKTIIEKTFS 62

Query: 215 EDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFY-VFINGRTVQDKFILSTIRTAYA 273
           ++  +N +       EI + G     +           +FIN R ++ K I   I + Y 
Sbjct: 63  KEVSSNILTSKLTDEEIGVDGEIFFTSSVYCGKKFILLIFINNRLIESKQIKQIIESIYE 122

Query: 274 ETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           + +P G  P V + + +  R +DVNVHP K  ++F +   I + I + +   +
Sbjct: 123 DFLPRGSRPWVYINITMPGRNIDVNVHPTKMEVQFLHDERIYDLIKKKMDMFL 175


>gi|153878762|ref|ZP_02004678.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152064774|gb|EDN65322.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 106

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 55/85 (64%)

Query: 457 LLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDI 516
           +L P  + + E E  L  +H    ++LG +  RFGP  + +R++PA+L+K NIP+L+RD+
Sbjct: 1   MLVPVNVSVSEREAELAEQHLNFFNQLGFEISRFGPEMLIVRQVPALLAKANIPRLVRDV 60

Query: 517 IDEIIDSSTTYTLQDRIENILATMA 541
           + +++    +  LQ+RI++I + ++
Sbjct: 61  LADLLRFGVSSRLQERIQDIFSDVS 85


>gi|71667114|ref|XP_820509.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885857|gb|EAN98658.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 867

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 95/289 (32%), Gaps = 52/289 (17%)

Query: 341 MISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESE 400
              S   +N  +T  P  A  L    ++ FL        +   SD   + E   P   S 
Sbjct: 574 WPGSGEMENKERTPCPFRAKHLIAQWDRKFLLLQMNDVGEP--SDTSPFDEIGSPSSTSI 631

Query: 401 ATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTP 460
                +G+      Q          L IVD HA HERL  E        + +        
Sbjct: 632 NGMPTMGVPPVFCKQAQSHHLPPPALYIVDPHAIHERLRLEFFLTT-AESYVRRDIGPIS 690

Query: 461 EIIDLLEGECALIMEHDEDLHRLGIKA--------------------ERFGPNAIAIREI 500
             + + E     +  +++ L R G +                      +     +A+ + 
Sbjct: 691 VPVHIPEEIRRDVTTYEDFLARWGWRFAHENLQCTGIRSAMASKSRYTQLSWCCVAVTQW 750

Query: 501 PAILSKKNIPQL---------LRDII--------------------DEIIDSSTTYTLQD 531
           P +  + ++ QL         + +++                    D I++S     +  
Sbjct: 751 PHLEIEGHVLQLETIDALRKTVEELVTVLPSWQMPAATEKESSKECDWIVESPGARVVPS 810

Query: 532 RIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF 580
            +   L T +C G++  G  + +  M +L+  ++     + C+HGRP+F
Sbjct: 811 AVLEFLVTRSCRGAVMFGDSLSTATMAQLIGALQAVEQYTLCSHGRPSF 859


>gi|71425439|ref|XP_813109.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877962|gb|EAN91258.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 868

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 105/317 (33%), Gaps = 55/317 (17%)

Query: 313 IIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQ 372
            +R+ +  +I  ++      +   +        +++  P    P  A  L    ++ FL 
Sbjct: 550 QVRSAMHLTIDPSLFAPRAYSGPSVWPGPGEMENKERTPC---PFRAKHLIAQWDRKFLV 606

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
                 ++   SD   + E   P   S      +G+      Q          L IVD H
Sbjct: 607 LQMNDMDE--HSDTSPFDEIGSPPSTSINGMPTMGVPPVLCKQPQSHHLPPPALYIVDPH 664

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA----- 487
           A HERL  E        + +          + + E     +  +++ L + G +      
Sbjct: 665 AIHERLRLEFFLTT-AESYVRRDIRPISVPVHIPEEIRRDVTTYEDFLAKWGWRFAHENL 723

Query: 488 ---------------ERFGPNAIAIREIPAILSKKNIPQL---------LRDII------ 517
                           +     +A+ + P +  + ++ QL         + +++      
Sbjct: 724 QCTGLRSAMASKSRYTQLSWCCVAVTQWPHLEIEGHVLQLETIDALRKTVEELVTVLPSW 783

Query: 518 --------------DEIIDSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLLRE 563
                         D I +S+    +   +   L T +C G++  G  + +  M +L+  
Sbjct: 784 QMPAATEKESSKECDWIGESAGARVVPSAVLEFLVTRSCRGAVMLGDSLSTATMVQLIGA 843

Query: 564 MEKNPNSSQCNHGRPTF 580
           ++     + C+HGRP+F
Sbjct: 844 LQAVEQYTLCSHGRPSF 860


>gi|114696938|ref|XP_519570.2| PREDICTED: similar to hPMSR6, partial [Pan troglodytes]
          Length = 46

 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV 42
          I+ +  K ++QI +G ++   S A+KEL+ENSLDA ++ +
Sbjct: 7  IKPIDRKSVHQICSGPVVLSLSTAVKELVENSLDAGATNI 46


>gi|213025348|ref|ZP_03339795.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 139

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 57/119 (47%)

Query: 250 FYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFR 309
            Y ++NGR ++D+ I   IR A  + +   + P  VL LEIDP QVDVNVHPAK  +RF 
Sbjct: 14  QYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFH 73

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
              ++ +FI Q +   + ++  +T  +           +N        +A     T  +
Sbjct: 74  QSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENRIAAGRNHFAVPAEPTAAR 132


>gi|221115731|ref|XP_002159366.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 498

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 107/250 (42%), Gaps = 11/250 (4%)

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN---LITDVIRRMAIAYPKVSFTFSTIK 190
              N GTIV V +LF  +P R    ++ +        I +++    I  PK+  T    K
Sbjct: 67  THHNVGTIVTVLNLFKALPVRRKLYENNRKVREEVKCIEELLISYGIGMPKLRITLKYDK 126

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI-----PTFNRG 245
           +  ++   +    N    +S + G + +NN  E+  K  E+ ++ Y            R 
Sbjct: 127 NIIWR---KDRAANCSLVLSALFGSNVLNNLKEIEYKDEELQVKAYIPKVGSASNVVGRT 183

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSY 305
            A++ ++ +N R V+ K I S ++T+Y +    G+YP  VL++E+ P Q+DVN+HP K  
Sbjct: 184 LADRMFIIVNKRPVRSKEIKSLLKTSYNDNCCQGKYPFSVLMIEVKPDQIDVNLHPNKMD 243

Query: 306 IRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNT 365
           I  +N  I+   + + +    ++      +     +++                 S  N+
Sbjct: 244 ILLQNTDILLEKLNKLLASVYSQSITRNITPEDNLVVNCEESSMQFANLTHLNTDSSLNS 303

Query: 366 QEKLFLQENR 375
              +F   ++
Sbjct: 304 LPSVFYDSSK 313


>gi|328769426|gb|EGF79470.1| hypothetical protein BATDEDRAFT_25830 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 294

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 20/89 (22%)

Query: 517 IDEIIDSSTTYTLQDRIENILATMACY---------GSIRSGRKMQSIEMNRLLREMEKN 567
           +++++       +     +IL + AC           +I+ G  +     + LL  + K 
Sbjct: 71  LEQLLHEQPKSDI-----DILKSRACRKVTRSSMHKSAIKFGDYLSQSSCSFLLNSLSKC 125

Query: 568 PNSSQCNHGRPTFIKL------KLSDIEK 590
               QC HGRPT   +        S +EK
Sbjct: 126 KFPFQCAHGRPTISPIGYLPSASNSSLEK 154


>gi|157104804|ref|XP_001648577.1| hypothetical protein AaeL_AAEL004171 [Aedes aegypti]
 gi|108880225|gb|EAT44450.1| hypothetical protein AaeL_AAEL004171 [Aedes aegypti]
          Length = 655

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/379 (16%), Positives = 126/379 (33%), Gaps = 48/379 (12%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ------R 74
           E  +  I  LI+NSLDA  + +   I      + QI DNG G++ E++    +       
Sbjct: 2   ESLTEIIVALIKNSLDANCTSIAIRICL-ELFWIQILDNGDGISREDLQSIGKCCLLNID 60

Query: 75  HCTSKISDDFSNIHTFGFRGEALPS-IGAVSHLTLMSRPPQNNTGAQIA----------- 122
           H   K S  F+ +      GE+L S I     + + S   + N G   +           
Sbjct: 61  HDRKKPSKQFARLT-----GESLLSIIAQCEEVLIESVDSKTNHGKCHSRLFKQQTAISP 115

Query: 123 ------ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                  + + +S  + V  + GT V ++++F+    R     S + +   +   IR +A
Sbjct: 116 RNEGSQRNFDSVSQYQYVRKSRGTTVTLKNVFYKNAERQRNH-SIKEDYQTLLVKIRTLA 174

Query: 177 IAYPKVSFTFST--IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           + +   SFT          +K    S        + ++   D          + + + ++
Sbjct: 175 LVHYDRSFTVQDLANTEVVFKSKRLSAFLPKYCELYRLSETDIDV----TTCRKDNVLIE 230

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
            Y          +     FING           +     E +   ++ +  +++   P  
Sbjct: 231 CYFSERRTRHPLSPIELTFINGLP------SGELMPTVNELLTQEKHNIDFVIVVTFP-- 282

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTS--SVLSKKMISSFHQDNAPK 352
              +V    +     +   I   + Q +  +       T         + +     +  +
Sbjct: 283 -KNDVLTQLNEPVHHDEEDILYGLSQPVDDSQTTFDKCTKWLKTNDFDVPAEIGSTSKEQ 341

Query: 353 THLPKYATSLTNTQEKLFL 371
            H  K A +    ++K+  
Sbjct: 342 KHPSKKAPAANKERQKINF 360


>gi|116205249|ref|XP_001228435.1| hypothetical protein CHGG_10508 [Chaetomium globosum CBS 148.51]
 gi|88176636|gb|EAQ84104.1| hypothetical protein CHGG_10508 [Chaetomium globosum CBS 148.51]
          Length = 265

 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 69/179 (38%), Gaps = 37/179 (20%)

Query: 419 ISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT--------PEIIDLLEGEC 470
            S++   L+++DQHAA ER   E + + +  +   S   L         P   DL + + 
Sbjct: 85  ASESDPLLILIDQHAADERCKVENLLKAYFVSSPASTGQLVAQTQNLDKPLRFDLSKQDG 144

Query: 471 ALIMEHDEDLHRLGIKAERFGPN----AIAIREIPAILSKKN--IPQLLRDIIDE----I 520
            L++   +     G+  E          + ++ +P  + ++    P+LL D++ +    +
Sbjct: 145 DLLVRFKKHFAHWGVVYETLHERSPHVTVEVQSLPPSIVERCRLEPRLLIDLLRKEVWKL 204

Query: 521 IDSSTTYTLQDR-------------------IENILATMACYGSIRSGRKMQSIEMNRL 560
            ++ ++   +                     I  ++ + AC  +I     + + + ++L
Sbjct: 205 HETGSSGARKQADKNRDDDDWVARFHDCPNGIMELINSRACRSAIMFNDPLTTEQSSKL 263


>gi|53729302|ref|ZP_00348376.1| COG0323: DNA mismatch repair enzyme (predicted ATPase) [Pasteuria
           nishizawae str. North American]
          Length = 248

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 59/140 (42%)

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
            N+  +     +G        V G     +       + E +++G    P   R +    
Sbjct: 7   QNKRSLLSAVGDGKLLHAFHSVFGSKVAQDFQLATTDTPEWSIEGIMARPVHTRSDRRGI 66

Query: 251 YVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRN 310
              +NGR+V+   +   +   Y   +  GRYP+ V  + +DP+ VD NVHPAK  IR R 
Sbjct: 67  VWVVNGRSVRSNVLSQALLRGYETLLQRGRYPIAVFHIRLDPQWVDANVHPAKQIIRLRC 126

Query: 311 PTIIRNFIIQSIQKAINKKG 330
              +   I++ +++   + G
Sbjct: 127 EKELGGAIVRLVRQTWEQAG 146


>gi|310128486|ref|XP_003120599.1| PREDICTED: mismatch repair endonuclease PMS2-like isoform 4,
           partial [Homo sapiens]
          Length = 464

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 24/231 (10%)

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAY 179
           +     KI    P     GT V V+ LF T+P R   F ++ + E   +  V+    I  
Sbjct: 1   MFDHNGKIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIIS 60

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGN--FPERISQVIGEDFINNAVELNEK---------- 227
             +  + +       +     T G+    E I  V G+  + + +   +           
Sbjct: 61  AGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEY 120

Query: 228 --------SNEITLQGYTGIPTFNRGNA--NQFYVFINGRTVQDKFILSTIRTAYAETIP 277
                    N   + G+    T   G +  ++ + FIN R      +   +   Y     
Sbjct: 121 GLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMY-N 179

Query: 278 LGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINK 328
             +YP VVL + +D   VD+NV P K  I  +   ++   +  S+    + 
Sbjct: 180 RHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFDS 230


>gi|58736983|dbj|BAD89400.1| PMS1 nirs variant 3 [Homo sapiens]
          Length = 47

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI 46
          ++L    +  +++ +II      +KELIENSLDA ++ V+  +
Sbjct: 2  KQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKL 44


>gi|114696986|ref|XP_001154875.1| PREDICTED: putative postmeiotic segregation increased 2-like
           protein 3-like, partial [Pan troglodytes]
          Length = 129

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV 42
           I+ +  K ++QI +G ++   S A+K L+ENSLDA ++ +
Sbjct: 90  IKPIDRKSVHQICSGPVVLSLSTAVKGLVENSLDAGATNI 129


>gi|115761542|ref|XP_001198900.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
          purpuratus]
 gi|115952204|ref|XP_001193528.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
          purpuratus]
          Length = 52

 Score = 70.5 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI 46
           KLS + +  I++ ++I   +  +KEL+ENSLDA +  VE  +
Sbjct: 10 HKLSGETVRLISSAQVITSVASVVKELLENSLDAHADNVEIKL 52


>gi|196017994|ref|XP_002118703.1| hypothetical protein TRIADDRAFT_62720 [Trichoplax adhaerens]
 gi|190578421|gb|EDV18811.1| hypothetical protein TRIADDRAFT_62720 [Trichoplax adhaerens]
          Length = 518

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 535 NILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNH 575
            I   +AC+ SIR+GR +   EMN+LLRE+EK P S QCNH
Sbjct: 1   EIWGNIACHSSIRAGRVLNIDEMNQLLREIEKTPLSEQCNH 41


>gi|261328170|emb|CBH11147.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 869

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 54/208 (25%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I DQHA HERL  E        + +  Q  LT   + +       +  ++  L R G 
Sbjct: 655 LFITDQHAIHERLRLEYFLA-HAESYVEPQPSLTTFPVKIPHDMRHCVAAYEGALKRWGW 713

Query: 486 KAER---------FGPNAI-------------AIREIPAILSKK-----NIPQLLRDIID 518
           +            F    I              I + P +  +      +    LR  ++
Sbjct: 714 RFSHNTPQPNLACFPEATIDFPDTPCPRKLFDTITQWPCLTLEGHRLVLDTVCALRQTLE 773

Query: 519 EIID--------------------------SSTTYTLQDRIENILATMACYGSIRSGRKM 552
           EI                                  +   +     T +C G+I  G ++
Sbjct: 774 EIAAVFPASHVSALRATNTPEGDNCERHRRHHEFRVIPSAVLQFFVTRSCRGAIMFGDRI 833

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTF 580
           +      L+  +      S C+HGRP+F
Sbjct: 834 KDEHAKLLVDSLRAVGQYSVCSHGRPSF 861


>gi|72389162|ref|XP_844876.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62358637|gb|AAX79095.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801410|gb|AAZ11317.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 869

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 54/208 (25%)

Query: 426 LVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGI 485
           L I DQHA HERL  E        + +  Q  LT   + +       +  ++  L R G 
Sbjct: 655 LFITDQHAIHERLRLEYFLA-HAESYVEPQPSLTTFPVKIPHDMRHCVAAYEGALKRWGW 713

Query: 486 KAER---------FGPNAI-------------AIREIPAILSKK-----NIPQLLRDIID 518
           +            F    I              I + P +  +      +    LR  ++
Sbjct: 714 RFSHNTPQPNLACFPEATIDFPDTPCPRKLFDTITQWPCLTLEGHRLVLDTVCALRQTLE 773

Query: 519 EIID--------------------------SSTTYTLQDRIENILATMACYGSIRSGRKM 552
           EI                                  +   +     T +C G+I  G ++
Sbjct: 774 EIAAVFPASHVSALRATNTPEGDNCERHRRHHEFRVIPSAVLQFFVTRSCRGAIMFGDRI 833

Query: 553 QSIEMNRLLREMEKNPNSSQCNHGRPTF 580
           +      L+  +      S C+HGRP+F
Sbjct: 834 KDEHAKLLVDSLRAVGQYSVCSHGRPSF 861


>gi|270587911|ref|ZP_06221432.1| DNA mismatch repair protein domain protein [Haemophilus influenzae
           HK1212]
 gi|270318472|gb|EFA29574.1| DNA mismatch repair protein domain protein [Haemophilus influenzae
           HK1212]
          Length = 80

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 47/80 (58%)

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
              P F+R   +  Y +INGR V+DK I   IR AYA+ +P   YP  VL ++++P  VD
Sbjct: 1   MATPNFSRTQNDLSYCYINGRMVRDKVISHAIRQAYAQYLPTDAYPAFVLFIDLNPHDVD 60

Query: 297 VNVHPAKSYIRFRNPTIIRN 316
           VNVHP K  +RF    +I +
Sbjct: 61  VNVHPTKHEVRFHQQRLIHD 80


>gi|223997578|ref|XP_002288462.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975570|gb|EED93898.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 324

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 19/156 (12%)

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKM-------------------RQDFNST 450
            +Q+   +I+ +    L +VDQHAA ER+  E +                   ++   + 
Sbjct: 165 ISQVEAKFIVIKANGKLCVVDQHAADERISLEMLERALFNPNLADDTVIKMTKKKLKVAD 224

Query: 451 KITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIP 510
            +    +L  + I L + + A    H   L +     E     ++ +  +P++  +    
Sbjct: 225 ILKPTQVLPAKRIALTQSQLAAARHHFSLLQKWKFTFEEPSDKSLILTGVPSVCGRVVNV 284

Query: 511 QLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSI 546
                 + E+            ++ ILA+ AC  +I
Sbjct: 285 NDFVAFVKELSHHRGGEIKPACVKRILASQACRYAI 320


>gi|4688764|emb|CAB41368.1| MutL protein [Escherichia coli]
 gi|4688768|emb|CAB41370.1| MutL protein [Escherichia coli]
          Length = 112

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G
Sbjct: 1   ALARFDVTINLSHNGKMVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRG 60

Query: 236 YTGIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +   P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL
Sbjct: 61  WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVL 112


>gi|73989706|ref|XP_859198.1| PREDICTED: similar to MutL protein homolog 1 isoform 3 [Canis
           familiaris]
          Length = 516

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 1/141 (0%)

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + GY     ++        +FIN R V+   +   I T YA  +P   +P + L LEI P
Sbjct: 1   MNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 59

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPK 352
           + VDVNVHP K  + F +   I   + Q I+  +     S        +           
Sbjct: 60  QNVDVNVHPTKHEVHFLHEDSILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEVV 119

Query: 353 THLPKYATSLTNTQEKLFLQE 373
                   S T + +K++  +
Sbjct: 120 KSTTGATPSSTGSGDKVYAHQ 140


>gi|4688774|emb|CAB41373.1| MutL protein [Escherichia coli]
 gi|4688786|emb|CAB41379.1| MutL protein [Escherichia coli]
          Length = 112

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A   V+ + S       +       G    R+  + G  F+  A+ +  +  ++TL+G
Sbjct: 1   ALARFDVTISLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRG 60

Query: 236 YTGIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +   P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL
Sbjct: 61  WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVL 112


>gi|224536168|ref|ZP_03676707.1| hypothetical protein BACCELL_01034 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522208|gb|EEF91313.1| hypothetical protein BACCELL_01034 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 63

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 546 IRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           I  G+ + + EM  L+  +   P  +    GR     +K  DIEKLF R
Sbjct: 15  IVYGQVLSNEEMANLVDNLFACPTPNYTPDGRTVLSTIKEEDIEKLFAR 63


>gi|30851293|gb|AAH52588.1| PMS2L5 protein [Homo sapiens]
          Length = 114

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV 42
          I+ +  K ++QI +G ++   S A+K+++ENSLDA ++ +
Sbjct: 34 IKPIDRKSVHQICSGPVVLSLSTAVKKIVENSLDAGATNI 73


>gi|327297971|ref|XP_003233679.1| hypothetical protein TERG_05552 [Trichophyton rubrum CBS 118892]
 gi|326463857|gb|EGD89310.1| hypothetical protein TERG_05552 [Trichophyton rubrum CBS 118892]
          Length = 593

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 33/272 (12%)

Query: 106 LTLMSRPPQNNTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQV 163
           + + +R P+             +  S  P +   GT V V D   ++P R     K    
Sbjct: 5   MYITTRVPEEQVARTVKFGRDGEPISDTPASHPIGTTVRVCDFLKSLPVRRQEAEKKSTK 64

Query: 164 ETNLITDVIRRMAIAYPKVSFTFSTIK-SNRYKMNFQSTNGNFPERISQVIGEDFINNAV 222
               I  ++R  AIA PK   +   +K   +  +   S   + P+ I QVIG   I++ +
Sbjct: 65  SILAIKKLLRGYAIARPKTRLSMRVLKSKEKDWVYAPSQKPSVPDAILQVIGSTVISSCI 124

Query: 223 E------------------LNEKSNEITLQGYTGIP---TFNRGNANQFYVFINGRTVQD 261
                               N  +  I +      P      R N    +V ++ R +  
Sbjct: 125 SSNASYPIPGEKDSPDSMVENYDTPTIHMSVIVPKPEAECMARINHKGQFVIVDARPLLT 184

Query: 262 -----KFILSTIRTAYAETIPLG--RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTII 314
                K +    ++ Y + I       P + L L+  P   D N+ P+K  I F +   +
Sbjct: 185 CMGFGKEVFKLFKSYYKKAIDYNILEDPFMFLSLDCPPGIYDANIEPSKDDILFEDNQAV 244

Query: 315 RNFIIQSIQ--KAINKKGISTSSVLSKKMISS 344
              I        ++    I  +    +   S+
Sbjct: 245 LQIIESVFMGIYSLETSTIIPTPDTRQSYSSN 276


>gi|4688706|emb|CAB41444.1| MutL [Escherichia coli]
 gi|4688708|emb|CAB41445.1| MutL [Escherichia coli]
 gi|4688710|emb|CAB41356.1| MutL protein [Escherichia coli]
 gi|4688712|emb|CAB41357.1| MutL protein [Escherichia coli]
 gi|4688714|emb|CAB41358.1| MutL protein [Escherichia coli]
 gi|4688716|emb|CAB41359.1| MutL protein [Escherichia coli]
 gi|4688718|emb|CAB41360.1| MutL protein [Escherichia coli]
 gi|4688720|emb|CAB41361.1| MutL protein [Escherichia coli]
 gi|4688722|emb|CAB41362.1| MutL protein [Escherichia coli]
 gi|4688724|emb|CAB41363.1| MutL protein [Escherichia coli]
 gi|4688726|emb|CAB41364.1| MutL protein [Escherichia coli]
 gi|4688760|emb|CAB41366.1| MutL protein [Escherichia coli]
 gi|4688762|emb|CAB41367.1| MutL protein [Escherichia coli]
 gi|4688766|emb|CAB41369.1| MutL protein [Escherichia coli]
 gi|4688770|emb|CAB41371.1| MutL protein [Escherichia coli]
 gi|4688772|emb|CAB41372.1| MutL protein [Escherichia coli]
 gi|4688776|emb|CAB41374.1| MutL protein [Escherichia coli]
 gi|4688780|emb|CAB41376.1| MutL protein [Escherichia coli]
 gi|4688782|emb|CAB41377.1| MutL protein [Escherichia coli]
 gi|4688784|emb|CAB41378.1| MutL protein [Escherichia coli]
 gi|4688788|emb|CAB41380.1| MutL protein [Escherichia coli]
 gi|7838183|emb|CAB91632.1| MutL protein [Escherichia coli]
 gi|7838193|emb|CAB91637.1| MutL protein [Escherichia coli]
 gi|7838195|emb|CAB91638.1| MutL protein [Escherichia coli]
          Length = 112

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G
Sbjct: 1   ALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRG 60

Query: 236 YTGIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +   P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL
Sbjct: 61  WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVL 112


>gi|88854620|ref|ZP_01129287.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
 gi|88816428|gb|EAR26283.1| RNA polymerase sigma factor [marine actinobacterium PHSC20C1]
          Length = 1108

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 19/201 (9%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITD 58
           M ++     +++ I  G      + AI +LI+NS+DA + R+     +  G     +I D
Sbjct: 23  MSLKP-DPSVLSAIGRG---HSLNSAIADLIDNSIDAGAERISIRFMVDSGLVKSIRIAD 78

Query: 59  NGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTL-MSRPPQN 115
           +G GM S+++  A+      K      ++ + G  G  L   S+   + L +  S   + 
Sbjct: 79  DGTGMNSDQLIDAMTLGKQRK-----YDVDSLGHFGMGLKAASMSQGACLRVFTSCGYEA 133

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
             G ++  +    +    V              + +        +  V    + D +   
Sbjct: 134 MHGVRMLRNDVGGNFDIEVLTESAAW-----AGYHLGTHRGIQSTGTVVEWSLLDAVSVA 188

Query: 176 AIAYPKVSFTFSTIKSNRYKM 196
           A    +  +    I   R ++
Sbjct: 189 AAPSVRQRWLDGVINDLRGEL 209


>gi|225858035|ref|YP_002739545.1| MutL [Streptococcus pneumoniae 70585]
 gi|225721567|gb|ACO17421.1| MutL [Streptococcus pneumoniae 70585]
          Length = 66

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 563 EMEKNPNSSQCNHGRPTFIKLKLSDIEKLFGR 594
           ++ +  N   C HGRP  +    SD+EK+F R
Sbjct: 21  QLSQCDNPYNCPHGRPVLVHFTKSDMEKMFRR 52


>gi|68011496|ref|XP_671165.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56487098|emb|CAI03947.1| hypothetical protein PB301453.00.0 [Plasmodium berghei]
          Length = 112

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 540 MACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTF-IKLKLSDIEK 590
            AC  ++  G+ +   EM  + +++    N   C HGRPT    +   +I+K
Sbjct: 10  RACRNAVMVGKTLNISEMIXIKKKLSVLKNPWNCPHGRPTIKYIINNIEIQK 61


>gi|332215528|ref|XP_003256896.1| PREDICTED: DNA mismatch repair protein Mlh1 isoform 3 [Nomascus
           leucogenys]
 gi|332215530|ref|XP_003256897.1| PREDICTED: DNA mismatch repair protein Mlh1 isoform 4 [Nomascus
           leucogenys]
 gi|332215532|ref|XP_003256898.1| PREDICTED: DNA mismatch repair protein Mlh1 isoform 5 [Nomascus
           leucogenys]
          Length = 515

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + GY     ++        +FIN R V+   +   I T YA  +P   +P + L LEI P
Sbjct: 1   MNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 59

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           + VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 60  QNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 93


>gi|158514350|gb|ABW69167.1| MutL-like 1 protein [Homo sapiens]
          Length = 133

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 231 ITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
             + GY     ++        +FIN R V+   +   I T YA  +P   +P + L LEI
Sbjct: 20  FKMNGYISNANYS-VKKCILLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEI 78

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSF 345
            P+ VDVNVHP K  + F +   I   + Q I+  +     S      K+    F
Sbjct: 79  SPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQKETSGRF 133


>gi|312129201|ref|YP_003996541.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311905747|gb|ADQ16188.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 772

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 31/154 (20%)

Query: 3   IRKLSEKIIN-QIAAGEIIERP--------SIAIKELIENSLDAESSRVETVIAG----G 49
           I KL +  +   + AG II R           A+ EL++N+ DA+++ V  V       G
Sbjct: 35  IAKLDDSQVRFSVDAG-IINRLGKELVGKHETAVSELVKNAFDADATEVNLVFENAWNAG 93

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTS-KIS---DDFSNIHTFGFRGEALPSIGAV-- 103
           G     I DNG GMT +++     R  +S KI     D       G +G     IG    
Sbjct: 94  GT--VTIEDNGTGMTKDQLINGFMRLSSSDKIHNPVSDKYKRTRAGRKG-----IGRFAT 146

Query: 104 ----SHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
               S LT+++   ++ +  +I+I+     + + 
Sbjct: 147 QRLGSRLTIITHTAKSESSIKISINWNDFETDKD 180


>gi|332144382|dbj|BAK19909.1| putative DNA mismatch repair protein [Streptomyces rochei]
          Length = 648

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQ 73
            P  A++EL+ NSLDA+++ V   +     GG     + DNG G+ +     A +
Sbjct: 19 TDPLGAVEELVWNSLDADATEVHVELELDDFGGVQAVVVRDNGHGIPAATAESAFK 74


>gi|30795107|ref|NP_851557.1| hypothetical protein pSLA2-L_p136 [Streptomyces rochei]
 gi|30698480|dbj|BAC76593.1| hypothetical protein [Streptomyces rochei]
          Length = 648

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQ 73
            P  A++EL+ NSLDA+++ V   +     GG     + DNG G+ +     A +
Sbjct: 19 TDPLGAVEELVWNSLDADATEVHVELELDDFGGVQAVVVRDNGHGIPAATAESAFK 74


>gi|282601458|ref|ZP_06258063.1| ATPase [Subdoligranulum variabile DSM 15176]
 gi|282568968|gb|EFB74503.1| ATPase [Subdoligranulum variabile DSM 15176]
          Length = 484

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 117/343 (34%), Gaps = 34/343 (9%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
             + A+ +LI+NS+ A+++R+        G  +  I+DNG+GMT +E+  A++    SK 
Sbjct: 10  DIATAVADLIDNSITAQANRISVQFEWNNGNPWISISDNGYGMTEDELFEAMKPG--SKN 67

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
             D  + +  G  G  L   S+     LT+ S+           I             N 
Sbjct: 68  PLDERSENDLGRFGLGLKTASLSQCKRLTVASKKDGG------RICCRCWDLDVVTQKNA 121

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNF 198
             +++V         + +  K        I + I R+             +    Y+  F
Sbjct: 122 WLLLKVPTETAATIIQKHLDKCPSGTIV-IWEKIDRI--------IPGEHVGDEEYQRAF 172

Query: 199 QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRT 258
            +   +  ERI  V+   +++   ++  + N   +  +   P             +  R 
Sbjct: 173 LNYAQSVKERI-SVVFSSYMSGPHKVAFEMNGREISMW--DPFMTDNP-------LTTRM 222

Query: 259 VQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN-- 316
             +   ++         I   +  +      +       N    + +  FRN  +I    
Sbjct: 223 PTEYLYVNGNEVKIKTFILPHQKKLSSNEFSLYAGAHGWNA--QQGFYIFRNNRLIVEGS 280

Query: 317 FIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
           +++   +KA   +       +  +  S ++ D    T +P  +
Sbjct: 281 WLLNGFEKAEQYRLARIRIDIGNETDSEWNIDVRKSTAVPPIS 323


>gi|221044260|dbj|BAH13807.1| unnamed protein product [Homo sapiens]
          Length = 460

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + GY     ++        +FIN R V+   +   I T YA  +P   +P + L LEI P
Sbjct: 1   MNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 59

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           + VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 60  QNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 93


>gi|263191713|ref|NP_001161090.1| DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens]
 gi|263191733|ref|NP_001161091.1| DNA mismatch repair protein Mlh1 isoform 3 [Homo sapiens]
 gi|119584887|gb|EAW64483.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli),
           isoform CRA_a [Homo sapiens]
 gi|119584888|gb|EAW64484.1| mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli),
           isoform CRA_a [Homo sapiens]
 gi|194379946|dbj|BAG58325.1| unnamed protein product [Homo sapiens]
 gi|194390916|dbj|BAG60576.1| unnamed protein product [Homo sapiens]
 gi|221045536|dbj|BAH14445.1| unnamed protein product [Homo sapiens]
 gi|221045916|dbj|BAH14635.1| unnamed protein product [Homo sapiens]
          Length = 515

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + GY     ++        +FIN R V+   +   I T YA  +P   +P + L LEI P
Sbjct: 1   MNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 59

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           + VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 60  QNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 93


>gi|159897058|ref|YP_001543305.1| hypothetical protein Haur_0529 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890097|gb|ABX03177.1| hypothetical protein Haur_0529 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 609

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 90/583 (15%), Positives = 180/583 (30%), Gaps = 72/583 (12%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           P+  + EL+ N+ DA+++ V   I         I DNG GM+ E+      R    K  D
Sbjct: 27  PA-VLSELVANAWDADATEVSINIRQ---DEIVIQDNGIGMSIEDANTKFLRIGHQKRED 82

Query: 83  DFSNI---HTFGFRGE---ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM 136
             + I   H  G +G    A+  I  ++   + S       G  I     +      V +
Sbjct: 83  SANTISGRHVMGRKGIGILAIFGIANIA--EVYSCKDGVPHGFIIRKGDIERGISSDVTL 140

Query: 137 NPGTIVEVRDLF----FTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI--- 189
              + V   DL       I  R         E  L TD+ RR  I     +F+       
Sbjct: 141 YRPSPVPQDDLSIESGTKIILREIKSSIVNAEKTLRTDLARRFTIINNNCNFSVIINNIP 200

Query: 190 ---------KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
                       ++       +  + +  +++     I N V+           G    P
Sbjct: 201 ISDNDRDYLNKVQFLWYLGEESSKYADFFTKLKKSFEITNLVDGMSGITVKGWIGTVYRP 260

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNV- 299
           +    +     +F +G+ +Q+  ++            +G      +  + +   +  N  
Sbjct: 261 SNIPTSHRTISIFAHGKMIQEDILIDITDAGVYRQYIIGEIEADFMDSDDEDDIITSNRQ 320

Query: 300 -----HPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
                 P    +       I   I         +              SS   +++ + +
Sbjct: 321 RIKQTDPRYLKLLQYVKADIMRVIASMWTNLRKEYPSKPKKEEVNDSSSSKDANSSEQEN 380

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
               + S   T           ++++    D    S  +D + E      Q         
Sbjct: 381 TNASSDSSNTTDASSDSSNTTDASSETNDGDVEDNSFFDDDIPEPSPPPKQEITT----- 435

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
                 +  + +   +     + +I   ++Q   + K TS       +  +LEG     +
Sbjct: 436 ---AFREMKNLVKNSNIPDQMKNIILYDIQQAAYAYKGTSFKACIVMLGAILEGVMLGTI 492

Query: 475 EHDEDLHRLGIKAERFGPNAIAIREIP---AILSKKNIPQLLRDIIDEIIDSSTT-YTLQ 530
           +  + L  L           I ++ +P   + L  +N     R ++ + I ++ +    +
Sbjct: 493 QRTDVLEYL-----------ITLQTVPKPLSDLGPRNPKFADRTVLAQYIGTTFSFQDCK 541

Query: 531 DRIE-----------NILATMACYGSIRSGRKMQSIEMNRLLR 562
           + IE           +IL T+    SI  G  +   +M +L R
Sbjct: 542 EIIELCVQGTNKLGVDILQTV--RNSIHPGSVL--KDMKQLAR 580


>gi|332816402|ref|XP_003339085.1| PREDICTED: DNA mismatch repair protein Mlh1 [Pan troglodytes]
 gi|332816404|ref|XP_003309742.1| PREDICTED: DNA mismatch repair protein Mlh1 [Pan troglodytes]
 gi|332816406|ref|XP_003309744.1| PREDICTED: DNA mismatch repair protein Mlh1 [Pan troglodytes]
          Length = 515

 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           + GY     ++        +FIN R V+   +   I T YA  +P   +P + L LEI P
Sbjct: 1   MNGYISNANYSVKKCIFL-LFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISP 59

Query: 293 RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI 326
           + VDVNVHP K  + F +   I   + Q I+  +
Sbjct: 60  QNVDVNVHPTKHEVHFLHEESILERVQQHIESKL 93


>gi|297671750|ref|XP_002813993.1| PREDICTED: DNA mismatch repair protein Mlh1-like [Pongo abelii]
          Length = 48

 Score = 67.8 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 28/31 (90%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIEN 33
          IR+L E ++N+IAAGE+I+RP+ AIKE+IEN
Sbjct: 8  IRRLDETVVNRIAAGEVIQRPANAIKEMIEN 38


>gi|12621959|gb|AAA21471.2| DNA mismatch repair protein [Trypanosoma rangeli]
          Length = 158

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 90  FGFRGEALPSIGAVSHLTLMSRP-PQNNTGAQIAISGEKISSVRPVAM---NPGTIVEVR 145
            GFRGEAL  +  +S +T+ +           I    +   +    +    NPGT V V 
Sbjct: 11  LGFRGEALHCLANLSEVTIQTMTVASQPVTLCITYDIKAHRTSVRASRERNNPGTTVLVE 70

Query: 146 DLFFTIPAR-LNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI---KSNRYKMNFQST 201
            +F  +P R   F K+++ +    T ++++ A+++P V    +     +S    +   + 
Sbjct: 71  KIFRALPVRHREFTKNKKKQLLAATLLMKQYALSHPHVRLLVAHCLGPRSAPTTLVSLTG 130

Query: 202 NGNFPERISQVIGEDFINNAVELNEK 227
             +    +++  G  ++ +      +
Sbjct: 131 TSDLQRALAEAYGGRYLASTTRTAPE 156


>gi|34558221|ref|NP_908036.1| Signal transduction histidine kinase [Wolinella succinogenes DSM
           1740]
 gi|34483940|emb|CAE10936.1| HYPOTHETICAL PROTEIN-Signal transduction histidine kinase
           [Wolinella succinogenes]
          Length = 761

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 50/256 (19%)

Query: 2   KIRKLSEKIIN--------QIAAG-------EIIERPSIAIKELIENSLDAESSRVETVI 46
           KI KLS ++           I AG       E++ R   A+ EL++N+ DA++ +V+   
Sbjct: 23  KILKLSSELSKYDQDSVRFSIDAGIIDRLGKELVARHETAVSELVKNAYDADAKKVKLTF 82

Query: 47  AG----GGKSFFQITDNGFGMTSEEIPMAVQRHCTS-KIS---DDFSNIHTFGFRGEALP 98
                 GG     I D+G GMT E++     R  +S KI        N    G +G    
Sbjct: 83  IDSSEIGGI--IVINDDGVGMTKEQLVNGFMRLASSDKIHFPFSPIYNRKRAGKKG---- 136

Query: 99  SIGAVS------HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFT-I 151
            IG  +       LT+ ++   +    +I I+     + + +       ++ +  +   +
Sbjct: 137 -IGRFAAQRLGKQLTITTQTEDSEQALEITINWNDFKNDQDLMF-----IDNKIEYKNRM 190

Query: 152 PARLNFLKSEQVETNLITDVIRRMAIAYPKVSF--------TFSTIKSNRYKMNFQSTNG 203
           P + +  +    +        +   +                    +   +K+  +  +G
Sbjct: 191 PKKRSGTRLVIRDLRDKWTEAQIKRVYRYASEILQPFPLAKVKLKTEDPGFKLICKRKDG 250

Query: 204 NFPERISQVIGEDFIN 219
           +F E I+      F +
Sbjct: 251 DFSEIIANDNTMFFEH 266


>gi|297680192|ref|XP_002817886.1| PREDICTED: putative postmeiotic segregation increased 2-like
           protein 12-like, partial [Pongo abelii]
          Length = 93

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 83  DFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTI 141
           D +++ TF F+GEAL S+ A+S +T+ +       G ++      KI    P     GT 
Sbjct: 9   DLTDVETFSFQGEALTSLCALSDVTISTCHASAKVGTRLVFDHNGKIIQKTPYPHPRGTT 68

Query: 142 VEVRDLFFTIPARLNFLKSE 161
           V  + +F T+P R    +  
Sbjct: 69  VSTKQVFSTLPVRHKEFQRN 88


>gi|238568410|ref|XP_002386420.1| hypothetical protein MPER_15318 [Moniliophthora perniciosa FA553]
 gi|215438403|gb|EEB87350.1| hypothetical protein MPER_15318 [Moniliophthora perniciosa FA553]
          Length = 56

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 26/41 (63%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRV 42
           I+ +    ++QI + +++     A++EL+ENSLDA ++ +
Sbjct: 16 TIKAIDANSVHQITSRQVVIDLHTAVEELVENSLDAGATSI 56


>gi|257784579|ref|YP_003179796.1| ATP-binding region ATPase domain-containing protein [Atopobium
           parvulum DSM 20469]
 gi|257473086|gb|ACV51205.1| ATP-binding region ATPase domain protein [Atopobium parvulum DSM
           20469]
          Length = 361

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           I      + EL+ NS DA +  +       G      I D+G G+  +      +   TS
Sbjct: 48  IRSVEDIVIELLRNSRDAGARHIYVATSKEGALRTITILDDGQGIPKDMQEKIFEARVTS 107

Query: 79  KISD---DFSNIHTFGFRGEALPSI 100
           K+     D   IH  G RG AL SI
Sbjct: 108 KLESMHMDRWGIH--G-RGMALYSI 129


>gi|4688778|emb|CAB41375.1| MutL protein [Escherichia coli]
 gi|7838197|emb|CAB91639.1| MutL protein [Escherichia coli]
          Length = 112

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%)

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A   V+   S       +    S  G    R+  + G  F+  A+ +  +  ++TL+G
Sbjct: 1   ALARFDVTINLSHNGKIVRQYRAVSEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRG 60

Query: 236 YTGIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +   P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL
Sbjct: 61  WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLRADQQPAFVL 112


>gi|4688728|emb|CAB41365.1| MutL protein [Escherichia coli]
          Length = 112

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 1/112 (0%)

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           A+A   V+   S       +       G    R+  + G  F+  A+ +  +  ++TL+G
Sbjct: 1   ALARLDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRG 60

Query: 236 YTGIPTFNRGN-ANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
           +   P       A   Y ++NGR ++D+ I   IR A  + +   + P  VL
Sbjct: 61  WVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVL 112


>gi|302335740|ref|YP_003800947.1| ATP-binding region ATPase domain protein [Olsenella uli DSM 7084]
 gi|301319580|gb|ADK68067.1| ATP-binding region ATPase domain protein [Olsenella uli DSM 7084]
          Length = 359

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 14/128 (10%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISD-- 82
            + E++ NS DA + R+    A GG +    + D+G G+  +          TSK+    
Sbjct: 54  VVVEMLRNSRDAGARRIFVATARGGDTRTLTVVDDGSGIPQDMRERVFDARVTSKLESMR 113

Query: 83  -DFSNIHTFGFRGEALPSI---GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
            D   +H  G RG AL S+    + + +         + G+ I +  +          + 
Sbjct: 114 MDRWGVH--G-RGMALFSVRENASSARV----MDSAPDKGSSIRVVTDATRLPERADQSS 166

Query: 139 GTIVEVRD 146
              V   D
Sbjct: 167 WPSVGADD 174


>gi|242221364|ref|XP_002476432.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724316|gb|EED78368.1| predicted protein [Postia placenta Mad-698-R]
          Length = 722

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 15/78 (19%)

Query: 33 NSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMA-----VQRHCTSKISD--D 83
          NSLDA++  ++  +         F + D+G G+  +   +      V R+ TSK      
Sbjct: 20 NSLDADARHIDIGVDCED---WSFWVRDDGVGIDRKGFDVLAGGAEVGRYGTSKAYTPAS 76

Query: 84 FSNIHTFGFRGE---ALP 98
             + TFGFRGE   AL 
Sbjct: 77 LDQVSTFGFRGEETFALA 94



 Score = 39.3 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSK 339
           + P  VL L I P+ VD  V PAK+ ++ +N   +  F+   ++  + + G     +  +
Sbjct: 148 KKPAYVLKLSIPPQHVDNCVEPAKTVVQLQNTGAVTAFLASVVESFLIRHGFVAQRIRQR 207

Query: 340 KMIS--SFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLL 382
              S  +   D  P     +   S   + E+  ++    S    +
Sbjct: 208 NDSSCRTLQTDMHPPRKRRRVTLSTKRSHEQDTVRPGSPSFRGAI 252


>gi|145593134|ref|YP_001157431.1| hypothetical protein Strop_0572 [Salinispora tropica CNB-440]
 gi|145302471|gb|ABP53053.1| hypothetical protein Strop_0572 [Salinispora tropica CNB-440]
          Length = 504

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 18/128 (14%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFF--QITDNGFGMTSEEIPMA----VQRHCTSKISDD 83
           L++NSLDA ++ +       G       + DNG G+  E I  A     QR  T    +D
Sbjct: 39  LVDNSLDAGATEILIRFVQWGTRLVGLYVVDNGRGIAPESIDDAMTVGGQRQYT---GND 95

Query: 84  FSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQ-NNTGAQIAISGEKISSVRPVAMNPGT 140
                  G  G  L   S    + LT++SR       G +  +   + S    +  +   
Sbjct: 96  L------GHFGLGLKAASFSQAASLTVLSRAAGRKPVGRRWQLDLVRHSFDCDIVPDSFV 149

Query: 141 IVEVRDLF 148
             E+   +
Sbjct: 150 AAELNRDW 157


>gi|183582331|dbj|BAG28293.1| mismatch repair protein [Mesocricetus auratus]
          Length = 38

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 28/31 (90%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIEN 33
          IR+L E ++N+IAAGE+I+RP+ AIKE+IEN
Sbjct: 8  IRRLDETVVNRIAAGEVIQRPANAIKEMIEN 38


>gi|332019180|gb|EGI59690.1| hypothetical protein G5I_12092 [Acromyrmex echinatior]
          Length = 552

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 545 SIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIK-LKLSDIEKL 591
           +I+ G K+   E   L++ ++     ++C HGRPT I  ++ S++ K 
Sbjct: 491 AIKFGDKLTLEECTNLIQLLKNTKFPNRCAHGRPTIIPVIEFSELGKR 538



 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 25/246 (10%)

Query: 105 HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE 164
            LT+ SR   +      A   E   +++ V   P     V    F      + +  ++ +
Sbjct: 37  RLTITSRHQHSEETFMKAFEMESSFNLKQVEQRPSCGTTVSIYGF------HEMPHKKWD 90

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE- 223
           T++I  +I  +A+   +VSF+    +  +  +     + +  E +  ++G+D   N V  
Sbjct: 91  TSIICFLIAAIAVTKLEVSFSIRDDERKKVVLRIAKPHNSI-EVLRTLVGKDLPLNHVWS 149

Query: 224 -LNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI------ 276
                       GY G+   N       ++F+N R +    IL  I+  + E +      
Sbjct: 150 IQCGSERNSNYHGYVGLSDKNA----MQWIFLNHRLIYCPLILKLIKIVFEEKLNLFSDQ 205

Query: 277 -PLGRYPV---VVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGIS 332
               R P    V +L  +   Q +      K  I F +   + N +     + +  K   
Sbjct: 206 KSNARDPYDENVFILFFLTFSQKEFTRENGK--IMFHDMQKVLNTVKNCAFQCLADKATV 263

Query: 333 TSSVLS 338
           +     
Sbjct: 264 SVITPY 269


>gi|303233277|ref|ZP_07319949.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302480667|gb|EFL43755.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 411

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 7/81 (8%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISD-- 82
           A+ EL+ NS DA +  +         +    + D+G G+         +   TSK++   
Sbjct: 77  AVIELLRNSYDAGAHTIYIASERQETTRTLVVIDDGCGIPRALHKTVFEARVTSKLNSMH 136

Query: 83  -DFSNIHTFGFRGEALPSIGA 102
            D   +H  G RG AL SI  
Sbjct: 137 TDAWGVH--G-RGMALYSIAQ 154


>gi|110164969|gb|ABG49483.1| MLH1+ins1a isoform [Homo sapiens]
          Length = 48

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/31 (61%), Positives = 27/31 (87%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIEN 33
          IR+L E ++N+IAAGE+I+RP+  IKE+IEN
Sbjct: 8  IRRLDETVVNRIAAGEVIQRPANTIKEMIEN 38


>gi|126176491|ref|YP_001052640.1| putative DNA mismatch repair protein [Shewanella baltica OS155]
 gi|125999696|gb|ABN63771.1| putative DNA mismatch repair protein [Shewanella baltica OS155]
          Length = 618

 Score = 65.1 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/474 (13%), Positives = 142/474 (29%), Gaps = 69/474 (14%)

Query: 25  IAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC-TSK- 79
             I ELI N  D+ ++ V+  I      G +   + DNG G+  +E      R   +SK 
Sbjct: 31  SVI-ELIANGFDSGATSVDVTIEHNEMHGLAAISVLDNGSGIDIKECDQHFSRFNESSKQ 89

Query: 80  ISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNT----------GAQIAISGEKIS 129
             DD    H  G     L      S+ T  ++   + +                   K  
Sbjct: 90  GDDDLQGAHGKGR----LAFHLLCSNATWYTKCHDSESKIFIDSLTLRNFSAKEISPKEQ 145

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                    GT V + +    +P      K+ +              I  P+   T +  
Sbjct: 146 HAPLSLFKSGTCVVLTNFHTNLPELDVIRKNLESYFGW-------RLILNPERKLTVNG- 197

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
                 +       +  ++   + G +F  + +             +   P         
Sbjct: 198 ------VEVDIPESDLIKKNICINGAEFKIDFIR------------WIDKP--------- 230

Query: 250 FYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFR 309
                      +  +    R  + +     + P   L         D N   + S + F 
Sbjct: 231 -----GDEKSYNYVVNHDGRVLHRDLSSFNKKPNFHLSSYSRSDWFD-NFDKSSSSLNFT 284

Query: 310 NPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTN--TQE 367
           +   +      +  K + K     SS + ++ +  F ++   +     Y     +   +E
Sbjct: 285 DTPQVSP--DSTEFKKLKKAIHDFSSDIYEEFLREFVEEKIEEYEARGYFPEHKSLKAEE 342

Query: 368 KLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLV 427
             + +EN  S    L   DPT    N+  E+       L       ++N  I +    ++
Sbjct: 343 AAWRRENTKSFVKSLYLADPTI--FNNIKEKPVKILLALIDKILVSNENDTIFEIIGEIL 400

Query: 428 IVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
            +D++  +      +++       +++  +L    + + +    ++  + E L 
Sbjct: 401 NLDENQINIFSR--QIKNSSLKNIVSTIEVLQKRELAVHKLREIMVKHYREVLE 452


>gi|323332495|gb|EGA73903.1| Mlh2p [Saccharomyces cerevisiae AWRI796]
          Length = 521

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 114/304 (37%), Gaps = 28/304 (9%)

Query: 83  DFSNIHTFGFRGEALPSIGAVSH----LTLMSRPPQNNTGAQIAISG---EKISSVRPVA 135
           D S + T GFRGEAL  +  + +    + + ++   +  G +  +             V+
Sbjct: 6   DISILTTLGFRGEALFLLSNLCNQKGSMQVETKTADDVIGEKWLVDSKGGITNGKRYKVS 65

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLITDVIRRMAIAYPKVSFTFSTI----- 189
              GT V +R L   + AR   + S  +   + +  +I   ++ +  + F FS +     
Sbjct: 66  CPVGTTVTLRKLLGGLRARYLEISSRPRKTFDELIYLINHYSLIHRNIRFYFSLVSLQKN 125

Query: 190 -----KSNRYKMNFQSTNGNFPERISQVIGE-----DFINNAVELNEKSNEITLQGYTGI 239
                K  +  ++ + +       ++++            N V   + + ++ L      
Sbjct: 126 GAIERKQMQETLDPKISRARSLSLLARLKKPVPLNFIVEENFVIDEKINLDLILPRMVPE 185

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY---PVVV-LLLEIDPRQV 295
                      ++ +N R +          +    +I        P+V  + L  D + +
Sbjct: 186 SDVINIKRRFKFLSVNERALSLNLETGKTISKLLSSIYRDFSLLDPMVWFINLNCDTKLL 245

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-GISTSSVLSKKMISSFHQDNAPKTH 354
           DVN+ P K+ +  ++  +I   I   ++  + ++ GI T+ +  K +  S ++  +P   
Sbjct: 246 DVNIEPEKNDVMIKSFEVIFKKIENKLKLLLEERIGIETNMLGDKHVQPSINEKTSPALV 305

Query: 355 LPKY 358
           +P  
Sbjct: 306 IPTP 309


>gi|259148024|emb|CAY81273.1| Mlh2p [Saccharomyces cerevisiae EC1118]
          Length = 614

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 114/304 (37%), Gaps = 28/304 (9%)

Query: 83  DFSNIHTFGFRGEALPSIGAVSH----LTLMSRPPQNNTGAQIAISG---EKISSVRPVA 135
           D S + T GFRGEAL  +  + +    + + ++   +  G +  +             V+
Sbjct: 6   DISILTTLGFRGEALFLLSNLCNQKGSMQVETKTADDVIGEKWLVDSKGGITNGKRYKVS 65

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKS-EQVETNLITDVIRRMAIAYPKVSFTFSTI----- 189
              GT V +R L   + AR   + S  +   + +  +I   ++ +  + F FS +     
Sbjct: 66  CPVGTTVTLRKLLGGLRARYLEISSRPRKTFDELIYLINHYSLIHRNIRFYFSLVSLQKN 125

Query: 190 -----KSNRYKMNFQSTNGNFPERISQVIGE-----DFINNAVELNEKSNEITLQGYTGI 239
                K  +  ++ + +       ++++            N V   + + ++ L      
Sbjct: 126 GAIERKQMQETLDPKISRARSLSLLARLKKPVPLNFIVEENFVIDEKINLDLILPRMVPE 185

Query: 240 PTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY---PVVV-LLLEIDPRQV 295
                      ++ +N R +          +    +I        P+V  + L  D + +
Sbjct: 186 SDVINIKRRFKFLSVNERALSLNLETGKTISKLLSSIYRDFSLLDPMVWFINLNCDTKLL 245

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKK-GISTSSVLSKKMISSFHQDNAPKTH 354
           DVN+ P K+ +  ++  +I   I   ++  + ++ GI T+ +  K +  S ++  +P   
Sbjct: 246 DVNIEPEKNDVMIKSFEVIFKKIENKLKLLLEERIGIETNMLGDKHVQPSINEKTSPALV 305

Query: 355 LPKY 358
           +P  
Sbjct: 306 IPTP 309


>gi|157867548|ref|XP_001682328.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125781|emb|CAJ03640.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1284

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 529  LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +     +   + +C G+I  G  ++      ++  +E       C+HGRP+F  L 
Sbjct: 1226 IPSVFLDFFISRSCRGAIMFGDVLRPTAARSMVAALECVEQYYVCSHGRPSFTHLT 1281


>gi|140571|sp|P25280|YD3M_HERAU RecName: Full=Uncharacterized 68.4 kDa protein in HgiDIIM 3'region;
           AltName: Full=ORF68
 gi|48774|emb|CAA38942.1| orf 68 [Herpetosiphon aurantiacus]
          Length = 611

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 86/576 (14%), Positives = 179/576 (31%), Gaps = 69/576 (11%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI-- 87
           L+ N+ DA+++ V   I         I DNG GM+ E+      R    K  D  + I  
Sbjct: 33  LVANAWDADATEVSINIRQ---DEIVIQDNGIGMSIEDANTKFLRIGHQKREDSANTISG 89

Query: 88  -HTFGFRGE---ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIV- 142
            H  G +G    A+  I  ++   + S       G  I     +      V +   + V 
Sbjct: 90  RHVMGRKGIGILAIFGIANIA--EVYSCKDGVPHGFIIHKGDIERGISSDVTLYRPSSVP 147

Query: 143 -EVRDLFFTIPARLNFLKSEQVETNL--ITDVIRRMAIAYPKVSFTFSTIK--------- 190
            E   +       L  +KS          TD+ RR  I     +F+              
Sbjct: 148 QEALSIESGTKIILREIKSSIGNAEKTLRTDLARRFTIINNNCNFSVIINNTPINDNDRD 207

Query: 191 --SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT-LQGYTGIPTFNRGNA 247
             +    + +     +        + + F    +        +    G    P+      
Sbjct: 208 YLNKVQFLWYLGGESSKYANFFTKLKKSFEITNLGDGMSGMTVKGWIGTVYRPSDIPNEQ 267

Query: 248 NQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAK-SYI 306
                F +G+ +Q+  ++            +G      +  + +   +  N    K +  
Sbjct: 268 PYHIYFAHGKMIQEDILIDITDAGLYRQYIIGEIEADFMDSDDEDDIITSNRQRIKQTDP 327

Query: 307 RFRNPTI-----IRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATS 361
           R+          I   I  +  K   +   +           S   +++ K +    + S
Sbjct: 328 RYLKLLEYVKIDIMRVIASTWTKLRKEYPSNPKKEEVNDSSLSKDSNSSEKENTNASSDS 387

Query: 362 LTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ 421
            T T E      +  + N    ++D    +++   ++                +     +
Sbjct: 388 STAT-ENASSDSSTATENASSETNDGEVEDNSFFDDDIPEPSPPPKQEITTAFR-----E 441

Query: 422 TTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLH 481
             + +   +     + +I   ++Q   + K TS       +  +LEG     ++  + L 
Sbjct: 442 MKNLVKNSNIPNQMKNIILYDIQQAAYAYKGTSFKACIVMLGAILEGVMLGTIQRTDVLE 501

Query: 482 RLGIKAERFGPNAIAIREIP---AILSKKNIPQLLRDIIDEIIDSSTT-YTLQDRIE--- 534
            L           IA+ ++P   + L  +N     R ++ + I ++ +    ++ IE   
Sbjct: 502 YL-----------IALPQVPKPLSDLGPRNPKFADRTVLAQYIGTTFSFQDCKEIIELCV 550

Query: 535 --------NILATMACYGSIRSGRKMQSIEMNRLLR 562
                   +IL T+    SI  G  +   +M +L R
Sbjct: 551 QGTNKLGVDILQTV--RNSIHPGSVL--KDMKQLAR 582


>gi|50119598|ref|YP_048765.1| putative DNA mismatch repair protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610124|emb|CAG73564.1| putative DNA mismatch repair protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 663

 Score = 63.9 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 109/355 (30%), Gaps = 64/355 (18%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCTS- 78
           PS AI EL+ N  DA +S+V+  I     GG     + DNG G+  ++      R   S 
Sbjct: 28  PSQAIVELVANGFDAGASKVDVQIKRNDLGGLESVSVLDNGSGINIDKCEEHFSRFNESL 87

Query: 79  K-ISDDFSNIHTFG---FRGEALPSIGAV---------SHLTLMSRPPQNNTGAQIAISG 125
           K  +DD    H  G   F    L S  A+           +T+ S   ++    ++    
Sbjct: 88  KQGNDDLQGAHGKGRLSFH---LFSKEAIWFTRYQGHDFKITINS---ESLRDFKVVELV 141

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
           E         +  GT V +R     +P + + +K  Q                     + 
Sbjct: 142 ESEQHASLRNLQNGTCVVLRHFIKNLPGKDSIIKKLQNNF-----------------GWR 184

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
            S  K+ +  +N    N      I            +E+++ +  +    +   P     
Sbjct: 185 LSLNKNRKLFLNDFEINVPLNVSI---------EKNIEVDKFTFNVLFIRWISKP----- 230

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD-VNVHPAKS 304
                          +  +    R  + E           L        VD  ++H +  
Sbjct: 231 ---------GVEKSFNYLVNKQGRIVFRELSSFNHKQNFYLSTYTRSDWVDFFDIHDSSL 281

Query: 305 YIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYA 359
                    I ++  + ++  I K G        K+ +     +   K + P Y+
Sbjct: 282 NFNDEKKVSISSYEYKKLKSEIQKIGKEIYETFLKEFVDEKICEYEEKGYFPSYS 336


>gi|17548153|ref|NP_521555.1| hypothetical protein RSc3436 [Ralstonia solanacearum GMI1000]
 gi|17430460|emb|CAD16933.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 667

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 17/117 (14%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRHCTSKIS 81
           P+ A++ELI N+ DA+++ V             I DNG GMT E +  +      +SK +
Sbjct: 56  PASALRELISNAYDADATSVVIQTDAPRFERIIIRDNGNGMTPEVLADLVCHIGGSSKRT 115

Query: 82  DDFSNIHT---------------FGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIA 122
              + + T                G  G  L ++  ++ H  ++++   +N      
Sbjct: 116 KKGTRLGTARIDDASRSPAGRKLIGKIGIGLFAVAQLTQHFQIITKRKGDNFRTSAV 172


>gi|291295488|ref|YP_003506886.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290470447|gb|ADD27866.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 473

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVE-TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ER    +  L+ N++ A ++R+    +    +   ++ DNG G++ E +P   +R  
Sbjct: 359 ERLHQVMANLVSNAIKAGATRIRLIALDLAERVVIRVEDNGEGISKEHLPHLFERFY 415


>gi|146083443|ref|XP_001464739.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068833|emb|CAM59767.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 1284

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 529  LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +         + +C G+I  G  ++      ++  ++       C+HGRP+F  L 
Sbjct: 1226 IPSVFLEFFISRSCRGAIMFGDVLRPTAARSMVSALDCVEQYYVCSHGRPSFTHLT 1281


>gi|162456783|ref|YP_001619150.1| hypothetical protein sce8500 [Sorangium cellulosum 'So ce 56']
 gi|161167365|emb|CAN98670.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 600

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPM-AVQRHCTSK 79
            P   ++EL++N +DA + ++   +    G     +TD+G GM+ E+I    +    +SK
Sbjct: 31  DPYAFLRELVQNGMDAGARKIAVRVETLPGACATSVTDDGCGMSREDIEGPLLTLFSSSK 90

Query: 80  ISDDFSNIHTFG 91
              D + I  +G
Sbjct: 91  -EGDPTKIGKYG 101


>gi|160878426|ref|YP_001557394.1| histidine kinase [Clostridium phytofermentans ISDg]
 gi|160427092|gb|ABX40655.1| histidine kinase [Clostridium phytofermentans ISDg]
          Length = 738

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 16/149 (10%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           I  P +A+ EL++NS DA++  +         G S   + D+G GM+ ++I        T
Sbjct: 26  ISNPIVAVSELVKNSYDADADNITVEFKNLVTGVSQLIVKDDGDGMSLDDIQNKWMIVGT 85

Query: 78  -SKISDDFSNIHT----FGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSV 131
            +KI +   N  +     G +G    S+  +S  L + +     +      I  +K  + 
Sbjct: 86  DNKIHN--PNTKSGRRKLGEKGIGRFSVERLSRKLKITTTEFGKDFALVFEIDWDKDEAE 143

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                       V    + IP   N   +
Sbjct: 144 ADEFGI------VNHPVYKIPFERNIKGT 166


>gi|326390619|ref|ZP_08212174.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993297|gb|EGD51734.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 883

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 72/260 (27%), Gaps = 56/260 (21%)

Query: 21  ERPSIAI-KELIENSLDA-ESSRV--ETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQ 73
              +  + KEL++N+LDA ES+ +  E  I            I+DNG G+          
Sbjct: 47  TNFASVVLKELVDNALDACESNNIIPEINIDILMKNDIYLISISDNGRGIPP-------- 98

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA-------QIAISGE 126
            H  S+I D   +I               VS  ++   P +   G             G 
Sbjct: 99  -HTVSRILD--FSIR--------------VSDKSIYRSPTRGAQGNALKTVLGIPFSLGC 141

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT-------------DVIR 173
            +  +        TI    D    +    +   S+ VE   IT                +
Sbjct: 142 SMPVIIEAQGTKHTIYTRVDAIGNVRIEHSKEPSQYVEGTKITVPVPSANQKFYPEWWAK 201

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP----ERISQVIGEDFINNAVELNEKSN 229
             AI  P  S             +  S   +F     E +  V   D     +  N  S 
Sbjct: 202 AFAIFNPHASIKIRLFDKKSVNDSACSNAKDFQNKTLEFLPTVSFPDEWIKFLPTNPTSP 261

Query: 230 EITLQGYTGIPTFNRGNANQ 249
               +       F    +  
Sbjct: 262 WWYSEEDLARLIFAYVYSKN 281


>gi|221234020|ref|YP_002516456.1| hypothetical protein CCNA_01083 [Caulobacter crescentus NA1000]
 gi|220963192|gb|ACL94548.1| hypothetical protein CCNA_01083 [Caulobacter crescentus NA1000]
          Length = 663

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 20/128 (15%)

Query: 7   SEKIINQIAAGEIIER-PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           S+++I ++  G  I R P+ A++ELI N+ DA++  V  +      S   + D+G GM+ 
Sbjct: 39  SDRVIARVTDG--IYRQPASALRELISNAWDADAQNVTILTDAPRFSRIYVRDDGAGMSH 96

Query: 66  EEIPMAVQR-HCTSKISDDFSNIH---------TFGFR------GEALPSIGAVS-HLTL 108
             +   +     ++K  D+  ++          T G R      G  L S+  ++    +
Sbjct: 97  RTLARLMHNIGGSAKRRDEGQDLGLASDADPELTPGGRKIIGKIGIGLFSVSQLARRFEI 156

Query: 109 MSRPPQNN 116
           +++   ++
Sbjct: 157 ITKTKGSD 164


>gi|322498152|emb|CBZ33227.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1284

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 529  LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +         + +C G+I  G  ++      ++  ++       C+HGRP+F  L 
Sbjct: 1226 IPSVFLEFFISRSCRGAIMFGDVLRPTAARSMVAALDCVEQYYVCSHGRPSFAHLT 1281


>gi|84392319|ref|ZP_00991746.1| putative DNA mismatch repair protein [Vibrio splendidus 12B01]
 gi|84376439|gb|EAP93319.1| putative DNA mismatch repair protein [Vibrio splendidus 12B01]
          Length = 655

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 23 PSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS- 78
          P  AI EL+ N  DA ++ ++  +      G    ++TD+G G+  + +  + +R   S 
Sbjct: 24 PENAIFELVWNGFDANATTIKINLTCNDMHGLECIEVTDDGDGIDVQTLQSSFERFNEST 83

Query: 79 KISDD 83
          KI++D
Sbjct: 84 KINND 88


>gi|302389265|ref|YP_003825086.1| histidine kinase [Thermosediminibacter oceani DSM 16646]
 gi|302199893|gb|ADL07463.1| histidine kinase [Thermosediminibacter oceani DSM 16646]
          Length = 186

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 10/61 (16%)

Query: 28 KEL-------IENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          KEL       +ENSL+A ++ VE  I    K      +I DNG GM  E    A+    T
Sbjct: 2  KELSLHVMDIVENSLNAGATVVEIKIVEDSKKDLLAIEIRDNGMGMDEETAKKALDPFFT 61

Query: 78 S 78
          S
Sbjct: 62 S 62


>gi|154335198|ref|XP_001563839.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060868|emb|CAM37885.1| conserved hypothetical protein [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1305

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 529  LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +     N   + +C G+I  G  ++      ++  ++       C+HGRP+F  L 
Sbjct: 1247 IPSVFLNFFISRSCRGAIMFGDVLRPNAARSMVAALDCVEQYYVCSHGRPSFTHLT 1302


>gi|121594547|ref|YP_986443.1| DNA mismatch repair ATPase-like protein [Acidovorax sp. JS42]
 gi|120606627|gb|ABM42367.1| DNA mismatch repair enzyme (predicted ATPase)-like protein
           [Acidovorax sp. JS42]
          Length = 651

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 13/111 (11%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           +  + E + N+ DA++  V+  I   G +  +I D+G GM+ +++     R    +  +D
Sbjct: 26  AAVLTEAVANAWDADAETVDIKIDSDG-NRIEILDDGIGMSVDDMNGKYLRVGYRRRDED 84

Query: 84  FSNIHT-------FGFRG---EALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
             +  T        G +G    +L SI  V  + + S    +  G ++ + 
Sbjct: 85  LEHGKTTAKGRPVMGRKGLGKLSLFSIANV--IEVESARDGSAHGLRMTVD 133


>gi|282877472|ref|ZP_06286293.1| histidine kinase [Prevotella buccalis ATCC 35310]
 gi|281300413|gb|EFA92761.1| histidine kinase [Prevotella buccalis ATCC 35310]
          Length = 766

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 91/617 (14%), Positives = 191/617 (30%), Gaps = 93/617 (15%)

Query: 2   KIRKLSEKII----NQIA----AGEIIERPSI--------AIKELIENSLDAESSRVETV 45
           KI  LS ++     + I     AG +I+R           A+ ELI+NS DA+++ V+  
Sbjct: 24  KILALSNELSKFDKDNIRFSVDAG-VIDRLGNELVARQETAVSELIKNSFDADATDVKLT 82

Query: 46  IAGG---GKSFFQITDNGFGMTSEEIPMAVQR-HCTSKIS---DDFSNIHTFGFRGEALP 98
                  G +   I DNG GM+ E++     R   T K+     +  +    G +G    
Sbjct: 83  FINSSIVGGTLI-IEDNGVGMSIEQLINGFMRISSTDKVRNPYSELYHRKRAGQKG---- 137

Query: 99  SIGAVS------HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTI--VEVRDLFF- 149
            IG  +       LT++++       + + I  +     + +      I  +E   +   
Sbjct: 138 -IGRFAVQRLGRKLTIITKTHNLEEASCLTIDWDNYVGDKNLTDITNPIKKIECDGVSGT 196

Query: 150 TIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
            +       K  +     I   +  +   +P      S      +K  F  ++GN   +I
Sbjct: 197 KLIIDKLRDKWTEAAIKRIYRYVSDIMQPFPLSLSRQSNNIDPGFKTYFFVSDGNGDRKI 256

Query: 210 SQ--VIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILST 267
               ++  D     ++     N                        +      D  +   
Sbjct: 257 VDEKIMIYDHAVAIIDGEIDDNHFAKYSVNSDK-------------LGVHFSDDIGVDPD 303

Query: 268 IRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNF-IIQSIQKAI 326
            +    + I   ++     + E       ++++  K          +             
Sbjct: 304 DKNTPFDQIKNVKFRAYYFIYESSLIP-KMHMNAIKRIANMSGGIRLYRNGFRVLPYGEP 362

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
               +S      ++ I   HQ+ +    +     S     E+   +E  ++ + L+   +
Sbjct: 363 GDDWLSLDLSTRRRSILPVHQNLSFFGFVEINDNSGN--FEETSSREGLMNNDALMQLQN 420

Query: 387 PTYSEDNDPV--------------EESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQH 432
            TY    + V              +E         I     +    + +    L   ++ 
Sbjct: 421 FTYRSIVNAVIKIAEVRNKKIVSGQEKSDDGNWEKIEIRVKNIALTLEELDKALESENES 480

Query: 433 AAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGP 492
              +R      R+  N  KI        ++  L              L  +G+   +F  
Sbjct: 481 IVTKR------RRRKNINKIKRNIAAVKKLQKLELDRTFKERSMLRVLSSVGLTIGQF-- 532

Query: 493 NAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGS-----IR 547
               + EI   L   NI   +R ++D++ +          ++   A+ + Y S     I 
Sbjct: 533 ----VHEIKYHLD--NIQDDIRTLMDDLKNEMNALNRLTILDKNFASFSTYMSYFDNVIS 586

Query: 548 SG--RKMQSIEMNRLLR 562
               ++++ IEM  ++R
Sbjct: 587 LNIVKELKPIEMRSVVR 603


>gi|221194507|ref|ZP_03567564.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
 gi|221185411|gb|EEE17801.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
          Length = 359

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 26  AIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD- 82
            + E++ NS DA +  +          +S   I D+G G+  +          TSK+   
Sbjct: 53  IVIEMLRNSRDAGARHIYVATTREQNTRSLI-ILDDGSGIPKDMQEKVFDARVTSKLESV 111

Query: 83  --DFSNIHTFGFRGEALPSIGAVSHLT-LMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
             D   +H  G RG AL SI   +  T + S  P   +  ++ +  EK+        +  
Sbjct: 112 HMDRWGVH--G-RGMALYSIRENADYTKVESSAPGLGSAIKVVVDAEKL--TERSDQSSW 166

Query: 140 TIVEVRD 146
             V V D
Sbjct: 167 PRVGVDD 173


>gi|222479739|ref|YP_002565976.1| DNA topoisomerase VI, B subunit [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452641|gb|ACM56906.1| DNA topoisomerase VI, B subunit [Halorubrum lacusprofundi ATCC
           49239]
          Length = 818

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 40/188 (21%)

Query: 23  PSIAIKELIENSLDAESSR-------VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR 74
              A+KE ++N+LDA  +        +   I   G      I DNG G+T E++P    +
Sbjct: 47  LVTAVKEAVDNALDA--TEEAGVLPDIYIEIEEVGDYYRLVIEDNGPGITKEQLPKVFGK 104

Query: 75  -------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGA 119
                  H             + G +G  +    AV  S LT      + SRP   +   
Sbjct: 105 LLYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGQPAKITSRPKGQSRAQ 153

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  +  ++   +  +  T     D        L    + +    L  D ++  A+  
Sbjct: 154 YFELIIDTDTNEPEIKADEETTW---DRPHGTRIELEMEANMRARNQLH-DYVKHTAVVN 209

Query: 180 PKVSFTFS 187
           P   F   
Sbjct: 210 PHARFELR 217


>gi|149918441|ref|ZP_01906931.1| putative DNA mismatch repair protein [Plesiocystis pacifica
          SIR-1]
 gi|149820741|gb|EDM80151.1| putative DNA mismatch repair protein [Plesiocystis pacifica
          SIR-1]
          Length = 423

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQR 74
          RP  AI+ELI NSLDA+++RVE        GG     + D+G G T +      +R
Sbjct: 34 RPLQAIQELIWNSLDADATRVEVAFDKNLFGGIERVSVIDDGEGFTPQRAFEVFER 89


>gi|318058422|ref|ZP_07977145.1| histidine kinase [Streptomyces sp. SA3_actG]
          Length = 670

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          P  A++ELI NSLDA++  V  ++     GG     + D+G G+ +E+     ++  TS
Sbjct: 22 PVGAVEELIWNSLDADAENVTVLLERNDIGGVDRVAVIDDGTGIPAEKCAERFEQIGTS 80


>gi|302521754|ref|ZP_07274096.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302430649|gb|EFL02465.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 670

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          P  A++ELI NSLDA++  V  ++     GG     + D+G G+ +E+     ++  TS
Sbjct: 22 PVGAVEELIWNSLDADAENVTVLLERNDIGGVDRVAVIDDGTGIPAEKCAERFEQIGTS 80


>gi|170739773|ref|YP_001768428.1| histidine kinase [Methylobacterium sp. 4-46]
 gi|168194047|gb|ACA15994.1| histidine kinase [Methylobacterium sp. 4-46]
          Length = 774

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          EL++NS DA ++ V+       K    + DNG GM+  ++ 
Sbjct: 30 ELVKNSFDAGATSVDIEFDPN-KRSIAVVDNGRGMSESDVR 69


>gi|254557685|ref|YP_003064102.1| hypothetical protein JDM1_2519 [Lactobacillus plantarum JDM1]
 gi|254046612|gb|ACT63405.1| hypothetical protein JDM1_2519 [Lactobacillus plantarum JDM1]
          Length = 572

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 12  NQIAA-GEIIERPSIAIKELIENSLDAESSR----------VETVIAGGGKSFFQITDNG 60
            QI +  E        + EL++N++DA + R          +   I        +++D+G
Sbjct: 22  QQIRSTHESYHNDYDVLAELVQNAVDAVAQRKREDSGYSAHIAICIDE-RHRLIEVSDDG 80

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP-SIGAVSHLTLMSRPPQN 115
            GM+ +E+  +V+ + +SK +++   I T G +G  L  SI   + + + +     
Sbjct: 81  VGMSKDELNRSVRLNESSKRNNEIDKI-TIGEKGIGLSFSIFESNRVLIQTNNDSE 135


>gi|16125283|ref|NP_419847.1| hypothetical protein CC_1031 [Caulobacter crescentus CB15]
 gi|13422325|gb|AAK23015.1| hypothetical protein CC_1031 [Caulobacter crescentus CB15]
          Length = 618

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 17/111 (15%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-HCTSKIS 81
           P+ A++ELI N+ DA++  V  +      S   + D+G GM+   +   +     ++K  
Sbjct: 9   PASALRELISNAWDADAQNVTILTDAPRFSRIYVRDDGAGMSHRTLARLMHNIGGSAKRR 68

Query: 82  DDFSNIH---------TFGFR------GEALPSIGAVS-HLTLMSRPPQNN 116
           D+  ++          T G R      G  L S+  ++    ++++   ++
Sbjct: 69  DEGQDLGLASDADPELTPGGRKIIGKIGIGLFSVSQLARRFEIITKTKGSD 119


>gi|294084867|ref|YP_003551627.1| hypothetical protein SAR116_1300 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664442|gb|ADE39543.1| hypothetical protein SAR116_1300 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 489

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
             + A+ +LI+NS+ A +++V    +  G  SF +I D+G GM+ +E+  A++    SK 
Sbjct: 25  DLAAALADLIDNSITAGATKVSIDCSYDGDVSFIRIADDGQGMSEDELKNAMRPA--SKN 82

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAIS 124
             +  +    G  G  L   S     +LT++S+       A   + 
Sbjct: 83  PLEDRSPDDLGRFGLGLKTASFSQARNLTVISKKDGKVFAANWDLD 128


>gi|322490169|emb|CBZ25430.1| conserved hypothetical protein [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1290

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%)

Query: 529  LQDRIENILATMACYGSIRSGRKMQSIEMNRLLREMEKNPNSSQCNHGRPTFIKLK 584
            +     +   + +C G+I  G  ++      ++  ++       C+HGRP+F +L 
Sbjct: 1232 IPSVFLDFFISRSCRGAIMFGDVLRPTAARTMVAALDCVEQYYVCSHGRPSFTQLT 1287


>gi|189423363|ref|YP_001950540.1| hypothetical protein Glov_0291 [Geobacter lovleyi SZ]
 gi|189419622|gb|ACD94020.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 538

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 13/116 (11%)

Query: 31  IENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
           I+NS+ A++  +E  +    GG     +TD+G GM  + +  A  R+  SK   D +++ 
Sbjct: 40  IDNSIAAQAKNIEVTVAMDFGGNILVSVTDDGCGMDRDGLINA-MRYG-SKRRADQASLG 97

Query: 89  TFGFRGEAL----PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGT 140
            FG     L     S      L+++SR    +   +     + I++V    +  G+
Sbjct: 98  KFG-----LGLKTASTAFCRRLSVISRSQAGSDVLKATWDLDHIAAVGRWELKLGS 148


>gi|255521306|ref|ZP_05388543.1| hypothetical protein LmonocFSL_08790 [Listeria monocytogenes FSL
           J1-175]
          Length = 483

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 14/132 (10%)

Query: 6   LSEKIINQIAAGEII-----ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           L     N I +   +        +  +    +NS+ A ++R++       K +  I DNG
Sbjct: 7   LVPDASNLIESQRSVGYTFETAIADVV----DNSVSAFATRIDINFDNL-KKYVTILDNG 61

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTG 118
            GM+  E+  A++    SK   D       G  G  L   S      LT++S      +G
Sbjct: 62  HGMSKSELLQAMK--YGSKSIFDLRTQEDLGRFGLGLKMASFSQCRKLTVVSIKEDELSG 119

Query: 119 AQIAISGEKISS 130
           A   +   K  +
Sbjct: 120 AIWDLDIVKKKN 131


>gi|293596305|ref|ZP_05230327.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293594569|gb|EFG02330.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 484

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 14/132 (10%)

Query: 6   LSEKIINQIAAGEII-----ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           L     N I +   +        +  +    +NS+ A ++R++       K +  I DNG
Sbjct: 8   LVPDASNLIESQRSVGYTFETAIADVV----DNSVSAFATRIDINFDNL-KKYVTILDNG 62

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTG 118
            GM+  E+  A++    SK   D       G  G  L   S      LT++S      +G
Sbjct: 63  HGMSKSELLQAMK--YGSKSIFDLRTQEDLGRFGLGLKMASFSQCRKLTVVSIKEDELSG 120

Query: 119 AQIAISGEKISS 130
           A   +   K  +
Sbjct: 121 AIWDLDIVKKKN 132


>gi|284989343|ref|YP_003407897.1| hypothetical protein Gobs_0757 [Geodermatophilus obscurus DSM
          43160]
 gi|284062588|gb|ADB73526.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
          43160]
          Length = 436

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 25 IAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSE 66
           A+ +L++NS+ A ++R+E VI   G      I D+G GMT+ 
Sbjct: 29 SAVADLVDNSVTAGATRIEIVIEYAGADSLIMIADDGCGMTAN 71


>gi|162149540|ref|YP_001604001.1| hypothetical protein GDI_3778 [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209544780|ref|YP_002277009.1| histidine kinase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788117|emb|CAP57721.1| unknown protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532457|gb|ACI52394.1| histidine kinase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 771

 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          EL++NS DA ++RV+      G++   I D+G GMTS +I 
Sbjct: 31 ELVKNSFDAGATRVDIEF-DPGEASITIVDDGKGMTSTDIR 70



 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 30  LIENSLD----AESSRVETVIAGGGKS--FFQITDNGFGMTSE--EIPMAVQRHCT 77
           L++N LD    A++S++E      G+     ++ D+G G+     +     +R  T
Sbjct: 672 LVDNLLDNARKAKASKIEFKATRKGQDSVLIRVIDDGLGIDRRKVDPSKIFERGYT 727


>gi|308233955|ref|ZP_07664692.1| ATP-binding region ATPase domain protein [Atopobium vaginae DSM
           15829]
 gi|328944035|ref|ZP_08241500.1| hypothetical protein HMPREF0091_10725 [Atopobium vaginae DSM 15829]
 gi|327492004|gb|EGF23778.1| hypothetical protein HMPREF0091_10725 [Atopobium vaginae DSM 15829]
          Length = 376

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 26  AIKELIENSLDAESSRVET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI---S 81
            + EL+ NS DA +  +              + D+G G+         +   TSK+    
Sbjct: 54  IVIELLRNSRDAGAHHIFVATTKQDTIRTITVLDDGVGIPQSMHDKIFEARVTSKLDSVH 113

Query: 82  DDFSNIHTFGFRGEALPSI 100
            D   IH  G RG AL +I
Sbjct: 114 SDHWGIH--G-RGMALYAI 129


>gi|169836749|ref|ZP_02869937.1| DNA mismatch repair protein mutL [candidate division TM7
           single-cell isolate TM7a]
          Length = 121

 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           + + A++   V+F+      +  K    ++       I ++ G+  + N  +        
Sbjct: 1   MLKEALSNSNVAFSLELDGKSTIK----TSGKGIENTILELFGKSVLRNLKKFEY----- 51

Query: 232 TLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEID 291
              GY G     R + +  + F+N R V+   I   +   Y   +  G+YP  ++    D
Sbjct: 52  ---GYLGNVEILRSSKDFMFTFVNNRYVKSATIERAVIDGYYTKLMKGKYPFAIIFYNAD 108

Query: 292 PRQVDVNVHPAK 303
           P+++DVNVHP+K
Sbjct: 109 PKEIDVNVHPSK 120


>gi|147919343|ref|YP_686921.1| hypothetical protein RCIX2531 [uncultured methanogenic archaeon
           RC-I]
 gi|110622317|emb|CAJ37595.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 519

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 22  RPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
               AI ++I+NS+ A +  V  V    G  S   I D+G GMT  E+  A++    S  
Sbjct: 44  DLQTAIADIIDNSISAGARNVYIVFNWDGANSTISIKDDGCGMTESELIKAMRLGSIS-- 101

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
             D  N    G  G  L   S       T+ S+   N    +       I +  
Sbjct: 102 PSDCRNPKDLGRFGLGLKTASFSQCRKFTVASKFENNPIAIRCWDIDYIIKTHD 155


>gi|262364458|gb|ACY61015.1| DNA mismatch repair protein [Yersinia pestis D182038]
          Length = 258

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 19/243 (7%)

Query: 335 SVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDND 394
           S   ++   ++ +D+  +    +    L           +  +      S      +   
Sbjct: 6   SSARERAAPAYKEDHPYQKQQGELYRQLLQPSAAAKPATSPAAIPASSVSSPSIPVQRIT 65

Query: 395 PVEESEATHYQ-LGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKIT 453
             EE         G         Y + +   G+ ++   A  ER + ++ +       + 
Sbjct: 66  QAEEPLHGDNYSFGRVLTVFPPCYALIEYQGGVALLSL-AVAERWL-KQAQLSPPEEGLR 123

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
            Q LL P  I L + E A    H++ L  +GI+       A  +R +   L ++N+ +L+
Sbjct: 124 PQPLLIPLKITLDKNEIAACQNHEKLLITMGIELSVEQGRA-TLRAVSLPLRQQNLQKLI 182

Query: 514 RDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQSIEMNRLLREMEKNPNSS 571
            +++  +              + LAT +A + GS          +  +LL E+E+     
Sbjct: 183 PELLGYLSQHEEISP------DTLATWLARHLGS--EHEVWNVSQAIQLLTEVERL---- 230

Query: 572 QCN 574
            C 
Sbjct: 231 -CP 232


>gi|289422802|ref|ZP_06424639.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156801|gb|EFD05429.1| conserved hypothetical protein [Peptostreptococcus anaerobius
           653-L]
          Length = 488

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 1   MKIRKLSEKIINQIAAGEII-ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK + L       I +   I      A+ ++I+NS+ A +  V+        ++  I DN
Sbjct: 1   MKTKSLPPYAPTLIESTRAIGYSLEAAVADIIDNSIAANAKNVDIYFFPIDGAYIAILDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNT 117
           G GM  EEI +A+Q    SK   +  +    G  G  L   S+     +T++S+   N  
Sbjct: 61  GKGMAEEEIDIAMQ--YGSKNPTEERDKKDLGRFGLGLKTASLSQCRCMTVISKQGDNLE 118

Query: 118 GAQIAISG 125
           G Q  I  
Sbjct: 119 GRQWDIDH 126


>gi|297159202|gb|ADI08914.1| ATPase [Streptomyces bingchenggensis BCW-1]
          Length = 491

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 27/153 (17%)

Query: 14  IAAGE---IIERPSI-------AIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFG 62
           IAA E   ++   S        A+ +L++NS+ AE+  ++      G+     + D+G G
Sbjct: 5   IAAPEPAGMVASLSSLGYSLPAAVADLVDNSIAAEARHIDVEFTWAGRDSWIAVVDDGRG 64

Query: 63  MTSEEIPMA---VQRH-CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQN 115
           M ++E+  A     R   TS+ S D       G  G  L S  + S    L++ +    +
Sbjct: 65  MNAQELVTAMTVAARGPATSRSSTDL------GRFGVGLKS-ASFSQSRQLSVATAT--D 115

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLF 148
                     + +       +  G  V+   + 
Sbjct: 116 GVWHVRTWDLDVVEESGEWRLLHGADVDTTTVL 148


>gi|302544261|ref|ZP_07296603.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461879|gb|EFL24972.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 485

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 22  RPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             S A+ EL++NS+ A + +V   I     G     Q+ DNG GMT   I   ++   +S
Sbjct: 28  SLSTALAELVDNSIQAAADQVAITITRAKAGDDPEIQVEDNGEGMTRSGIEACLRFGGSS 87

Query: 79  KISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQ 114
           +         +FG  G  L   S+    H+ + S    
Sbjct: 88  RF----DGRRSFGRFGMGLPAASLSQARHIEVTSWQNG 121


>gi|93007192|ref|YP_581629.1| hypothetical protein Pcryo_2368 [Psychrobacter cryohalolentis K5]
 gi|92394870|gb|ABE76145.1| conserved hypothetical protein [Psychrobacter cryohalolentis K5]
          Length = 486

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTF 90
           I+NS+ A +S V         +   I DNG GM+ +E+  A+     S + +   +    
Sbjct: 33  IDNSITAGASEVHITFETDPVTKVAILDNGDGMSRDELIKAMTIGSKSPLIE--RSTKDL 90

Query: 91  GFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV 131
           G  G  L   S      LT+++R           +     S+ 
Sbjct: 91  GRFGLGLKTASFSQCKRLTVVTRQFDQTWAMCWDLDQVTKSNC 133


>gi|26990693|ref|NP_746118.1| hypothetical protein PP_3988 [Pseudomonas putida KT2440]
 gi|24985685|gb|AAN69582.1|AE016592_1 hypothetical protein PP_3988 [Pseudomonas putida KT2440]
          Length = 682

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 26/131 (19%)

Query: 7   SEKIINQIAAGEIIER-PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
            E++  +I  G  I R P+ A++ELI N  DA+++ V         S   + DNG G+T 
Sbjct: 39  DERVFARITDG--IYRDPASALRELIANGYDADATEVRVETDFPRFSKISVRDNGRGLTK 96

Query: 66  EEIPMA-------------VQRHCTSKISDDFSNIHTFGFR------GEALPSIGAVS-H 105
           E +                 Q H   +IS +     +   R      G  L S+  ++ H
Sbjct: 97  ETLAHVICHIGGSLKRTKQGQAH---QISSEEDASRSKAGRPLIGKLGIGLFSVSQITHH 153

Query: 106 LTLMSRPPQNN 116
           + ++S+   +N
Sbjct: 154 VVIISKVKGSN 164


>gi|307719868|ref|YP_003875400.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192]
 gi|306533593|gb|ADN03127.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192]
          Length = 584

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAES---SRVETVI---AGGGKSF--FQITD 58
            E I+  I A E  E    A+  LI+N++DA +     +   +   +  G+S+   +I D
Sbjct: 466 PEDIV--IQADE--EHLKQALSNLIQNAIDAGAGKEQTITVRLLRTSRDGRSYATIEIRD 521

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+  ++  +    + T+K
Sbjct: 522 EGHGIPEDQQRLVFLPYYTTK 542


>gi|157691442|ref|YP_001485904.1| ATP-binding protein [Bacillus pumilus SAFR-032]
 gi|157680200|gb|ABV61344.1| possible ATP-binding protein [Bacillus pumilus SAFR-032]
          Length = 496

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 31 IENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ++NS+DA++S ++  I     KS+ +I DNGFGM  +E+ +A++   T
Sbjct: 35 VDNSIDAKASEIKIDIAWDSDKSYVRIEDNGFGMNEDELVLAMKVGST 82


>gi|170291064|ref|YP_001737880.1| DNA topoisomerase VI subunit B [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175144|gb|ACB08197.1| DNA topoisomerase VI, B subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 512

 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 31/90 (34%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKS---------------------FFQITDNGFG 62
              I+EL+ENSLDA        +   G+S                       ++ DNG G
Sbjct: 33  YTIIRELVENSLDA--------VELAGRSPKVLIVMREEREGGEESLPWYRIRVADNGIG 84

Query: 63  MTSEEIPMAVQR-HCTSKISDDFSNIHTFG 91
           M  EEIP+A  R   +SK      +  TFG
Sbjct: 85  MDPEEIPLAFGRVFVSSKYR-LIQSRGTFG 113


>gi|317401188|gb|EFV81834.1| hypothetical protein HMPREF0005_01194 [Achromobacter xylosoxidans
           C54]
          Length = 472

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 39/207 (18%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC-----T 77
           + A+ +LI+NS++A ++ V   +   G+  +  I DNG GM++ ++  A++        T
Sbjct: 27  AAAVADLIDNSIEARANTVRLDVEWNGEDSYVMIADNGVGMSASQLREALRFGAERDYDT 86

Query: 78  SKISDDF----SNIHTFGFRGEALPSIGAVSHLTLMSRPPQN---------NTGAQIAIS 124
               +D       + T         S+     LT+ SR  +          + G   A +
Sbjct: 87  ----EDLGKFGLGLKT--------ASLSQCLRLTVASRQNEGRADINAYCWDLGHIEATN 134

Query: 125 GEKISSVRPV-------AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
             +I  V+ +            T   V  ++  +   L + + +          + R   
Sbjct: 135 RWEILPVKSIDLQPQARQHLKETTGTVV-IWERLDRILGYKRPDGEMARKQLTAMCRALE 193

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGN 204
            +  + F      + R K      NGN
Sbjct: 194 EHVAMVFHRFLEGAVRGKRLAIYLNGN 220


>gi|284165558|ref|YP_003403837.1| DNA topoisomerase VI, B subunit [Haloterrigena turkmenica DSM 5511]
 gi|284015213|gb|ADB61164.1| DNA topoisomerase VI, B subunit [Haloterrigena turkmenica DSM 5511]
          Length = 825

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 59/224 (26%)

Query: 23  PSIAIKELIENSLDAESSR------VETVIAGGG--KSFFQITDNGFGMTSEEIPMAVQR 74
              A+KE ++N+LDA +        +   I   G       + DNG G+T E +P    +
Sbjct: 47  LVTAVKEAVDNALDA-AEESGILPDIYVEIEEAGDYYRLI-VEDNGPGITKESLPKVFGK 104

Query: 75  -------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTG- 118
                  H             + G +G  +    AV  S LT      + SR   ++   
Sbjct: 105 LLYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGKPAKITSRTQGSSEAE 153

Query: 119 -------AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
                           +          GT +E+  +   + AR               D 
Sbjct: 154 YFELIVDTDSNEPEISVEETTSWDRPHGTRIELE-MEANMRARQQLH-----------DY 201

Query: 172 IRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
           I+  A+  P            +    F+      PE   ++   
Sbjct: 202 IKHTAVVNPHARLELR---EPQEHFKFERATDQLPEETEEIRPH 242


>gi|158339670|ref|YP_001520677.1| sensor histidine kinase, putative [Acaryochloris marina MBIC11017]
 gi|158309911|gb|ABW31527.1| sensor histidine kinase, putative [Acaryochloris marina MBIC11017]
          Length = 723

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAV 72
           + EI+     A+ EL++N+ DA+++ V          GK   +I DNG GM+ + I  + 
Sbjct: 31  SSEIV-----AVIELVKNAYDADATIVLVKFIEPLETGKGSIEIIDNGNGMSLKIIEKSW 85

Query: 73  QRHCT-SKISDDFSNI---HTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEK 127
               T SK +  FS I      G +G    +   +S  L +++R  +++   +     ++
Sbjct: 86  MEPATFSKKNTKFSKIYRRRFLGEKGVGRFATSKLSDFLEIVTRYIESDNEIRAIFDWKQ 145

Query: 128 ISSVRPV 134
                  
Sbjct: 146 FDDEEKY 152


>gi|224368762|ref|YP_002602923.1| sensory signal transduction histidine kinase (ATPase domain
          protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691478|gb|ACN14761.1| sensory signal transduction histidine kinase (ATPase domain
          protein) [Desulfobacterium autotrophicum HRM2]
          Length = 177

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTS 78
          L+ENS+ A +++++  I            +TDNG G+    + +      TS
Sbjct: 11 LVENSIQAGATQIDIKIDETHLHTHIKITVTDNGKGIDPAMLAVISDPFVTS 62


>gi|149918289|ref|ZP_01906780.1| hypothetical protein PPSIR1_36277 [Plesiocystis pacifica SIR-1]
 gi|149820815|gb|EDM80224.1| hypothetical protein PPSIR1_36277 [Plesiocystis pacifica SIR-1]
          Length = 1053

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 13/127 (10%)

Query: 27  IKELIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPM-AVQRHCTSKISDDF 84
           ++EL++N+ DA ++RV+  +  G  ++  +  D+G GM+           + +SK S   
Sbjct: 28  VRELLQNARDAGATRVDFTVEEGEDRTRVRCRDDGEGMSEGHARRYLFSLYASSKESSS- 86

Query: 85  SNIHTF--GFRGEALPSIGAV--SHLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPG 139
           + +  F  GF      SI       + + S P     G +I + G+ +  +   V M PG
Sbjct: 87  NQVGRFGVGF-----WSILRFEPKRIVIRSCPRAGGPGWEITLDGDLRDGAQARVDMGPG 141

Query: 140 TIVEVRD 146
           T + +  
Sbjct: 142 TEIILER 148


>gi|327438859|dbj|BAK15224.1| DNA mismatch repair enzyme [Solibacillus silvestris StLB046]
          Length = 498

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 28/197 (14%)

Query: 22  RPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
               AI ++++NS+DA   +VE  +     G  S+ +I D+G GM   ++  A++    S
Sbjct: 26  DLETAIADIVDNSIDAGCKQVEIKMSWNEDG--SYIRIEDDGSGMDENQLKKAMKLG--S 81

Query: 79  KISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV----- 131
           K   +  +    G  G  L   S      LT++++     +     +   +  +      
Sbjct: 82  KNPQNIRDKRELGRFGMGLKTASFSLGKRLTVLTKKTGEKSVRCWDLEYIENENEWEIFL 141

Query: 132 -----------RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                        ++   GT+V + +    + A    LK ++   N I  V   + + + 
Sbjct: 142 EPRDIMSSKRLGTISSETGTVVLIEN-LDRVVASSFTLKKQKSFFNKIARVRNHLGMVF- 199

Query: 181 KVSFTFSTIKSNRYKMN 197
              +  S  K     +N
Sbjct: 200 -HRYLSSIDKKLVIVLN 215


>gi|307719058|ref|YP_003874590.1| histidine kinase [Spirochaeta thermophila DSM 6192]
 gi|306532783|gb|ADN02317.1| histidine kinase [Spirochaeta thermophila DSM 6192]
          Length = 207

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 27 IKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          I EL++N+L+A +  +E  +  G G    ++ D+G GMT EE   A+    T
Sbjct: 9  ILELVQNALEAGARTIEVSLHTGEGWCTVEVRDDGKGMTPEEKERALDPFFT 60


>gi|73539982|ref|YP_294502.1| sensor histidine kinase [Ralstonia eutropha JMP134]
 gi|72117395|gb|AAZ59658.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ralstonia eutropha JMP134]
          Length = 659

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 30  LIENSLDAESS------RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+LDA +S      R++  ++        Q+ DNG G++ E++P   +   T+K
Sbjct: 548 LIGNALDAIASAAPAQGRIDVSVSADASAVTIQVRDNGTGISPEDLPRLFEPFFTTK 604


>gi|296501659|ref|YP_003663359.1| type II restriction-modification system methylation subunit
           [Bacillus thuringiensis BMB171]
 gi|296322711|gb|ADH05639.1| Type II restriction-modification system methylation subunit
           [Bacillus thuringiensis BMB171]
          Length = 494

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 31  IENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++NS+DA+++ V        G  + +I DNG GMT EE+  A+     SK   D      
Sbjct: 32  VDNSIDAKATYVHLEFEYDMGNGYIRIEDNGIGMTDEELQKAMTIG--SKDPRDKRGKEE 89

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQ 114
            G  G  L   S      L ++++   
Sbjct: 90  LGRFGMGLKTASFSLGKRLCIITKKDG 116


>gi|152989479|ref|YP_001347880.1| putative prophage encoded two-component system histidine kinase
          [Pseudomonas aeruginosa PA7]
 gi|150964637|gb|ABR86662.1| putative prophage encoded two-component system histidine kinase
          [Pseudomonas aeruginosa PA7]
          Length = 774

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          EL++NS DA +++V+       +    I DNG GM+ ++I
Sbjct: 30 ELVKNSFDAGATKVDIEF-DPEEQQIAIIDNGHGMSRDDI 68



 Score = 37.7 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 16  AGEIIERPSI----AIKELIENSLD----AESSRVETVIAGGGKS--FFQITDNGFGMTS 65
           +GE + R       A+  L++N LD    A++S++E  +    KS     ++D+G G+  
Sbjct: 660 SGESLIRDFSPVDIAV--LVDNLLDNARKAKASKLEFKVIKKTKSHIKIHVSDDGLGIDE 717

Query: 66  E--EIPMAVQRHCT 77
              +     +R  T
Sbjct: 718 RKVDPSKIFERGYT 731


>gi|229183238|ref|ZP_04310468.1| hypothetical protein bcere0004_8150 [Bacillus cereus BGSC 6E1]
 gi|228600377|gb|EEK57967.1| hypothetical protein bcere0004_8150 [Bacillus cereus BGSC 6E1]
          Length = 497

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 31  IENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++NS+DA+++ V        G  + +I DNG GMT EE+  A+     SK   D      
Sbjct: 35  VDNSIDAKATYVHLEFEYDMGNGYIRIEDNGIGMTDEELQKAMTIG--SKDPRDKRGKEE 92

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQ 114
            G  G  L   S      L ++++   
Sbjct: 93  LGRFGMGLKTASFSLGKRLCIITKKDG 119


>gi|313680469|ref|YP_004058208.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313153184|gb|ADR37035.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 478

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ER       LI N++ A ++R+   +    G+   Q++DNG G+  E +P   +R  
Sbjct: 364 ERLHQVFANLIANAVKAGATRITLRVRRPPGRVIVQVSDNGPGIPPEHLPHLFERFY 420


>gi|295830061|gb|ADG38699.1| AT4G02460-like protein [Capsella grandiflora]
          Length = 199

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G+  + I  V G     +   ++    ++  ++G+   P     R  A++ Y FINGR V
Sbjct: 2   GSLKDNIITVFGXSTFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPV +L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVAILDFIVPGGACDLNVTPDKRKVFFADETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           Z + +  +      S ++++   +S   D A  + L + ++
Sbjct: 121 ZGLNEIYSSSN--ASYIVNRFEENSEQPDKAGVSSLQEKSS 159


>gi|115524182|ref|YP_781093.1| hypothetical protein RPE_2169 [Rhodopseudomonas palustris BisA53]
 gi|115518129|gb|ABJ06113.1| hypothetical protein RPE_2169 [Rhodopseudomonas palustris BisA53]
          Length = 642

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 24/157 (15%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGG--------GKSFFQIT--DNGFGMTSEEIPMAVQ 73
           S A +E+I+N+++A++SR++              G++   +   DNG GM+ + +  A+ 
Sbjct: 49  SSAAREIIDNAIEAKASRIDVFFDQAKREKGKKDGEAVSSVAFLDNGSGMSPKMVRYALS 108

Query: 74  RHC-TSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS 130
               T    D+   I  FGF    L   SI     + + ++   +    +  +    + +
Sbjct: 109 WGAGTH--FDEMGTIGKFGF---GLPNASINQTRRVEVYTKRRGDEVVTKAWLDINNVQA 163

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
                +       + D          +LK   +    
Sbjct: 164 HGLTRIEEPETAVLPDFV------RRYLKDNNLTFEH 194


>gi|254198357|ref|ZP_04904779.1| hypothetical protein BURPSS13_P1283 [Burkholderia pseudomallei
          S13]
 gi|169655098|gb|EDS87791.1| hypothetical protein BURPSS13_P1283 [Burkholderia pseudomallei
          S13]
          Length = 589

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 11/71 (15%)

Query: 26 AIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          A+KELI+N+ DA++ RV  V+ A        I D+G GMT EE+     RH  S I+ D 
Sbjct: 28 ALKELIDNAWDADAERVSIVLPAPLSGDSIVIEDDGTGMTEEELR----RHYLS-IATDR 82

Query: 85 SNIHTFGFRGE 95
           +      RGE
Sbjct: 83 RS-----RRGE 88


>gi|305662508|ref|YP_003858796.1| DNA topoisomerase VI, B subunit [Ignisphaera aggregans DSM 17230]
 gi|304377077|gb|ADM26916.1| DNA topoisomerase VI, B subunit [Ignisphaera aggregans DSM 17230]
          Length = 528

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 23 PSIAIKELIENSLDA-ESS----RVETVIAGGGKS----FFQITDNGFGMTSEEIPMAV 72
             A++EL+EN+LDA ++      +E  I             + DNG G+  + IP A 
Sbjct: 33 LYQAVRELVENALDATDAHGILPNIEVSIERDSVKQYVYRISVKDNGIGIPEKYIPEAF 91


>gi|300711733|ref|YP_003737547.1| DNA topoisomerase VI subunit B [Halalkalicoccus jeotgali B3]
 gi|299125416|gb|ADJ15755.1| DNA topoisomerase VI subunit B [Halalkalicoccus jeotgali B3]
          Length = 789

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 40/188 (21%)

Query: 23  PSIAIKELIENSLDAESSR-------VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQR 74
              A+KE ++N+LDA  +        +   I   G      + DNG G+T E+IP    +
Sbjct: 47  LVTAVKEAVDNALDA--TEEAGILPDIYVEIEEVGNYYRLVVEDNGPGITREQIPKVFGK 104

Query: 75  -------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGA 119
                  H             + G +G  +    AV  S LT      + SR    +   
Sbjct: 105 LLYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGKPAKITSRTQGADEAQ 153

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +  +  ++   ++    T     D        L    + +    L  D I+  A+  
Sbjct: 154 YFELIIDTDTNEPEISSAETTSW---DRPHGTRIELEMEANMRARGQL-RDYIKHTAVVN 209

Query: 180 PKVSFTFS 187
           P       
Sbjct: 210 PHARIELH 217


>gi|315187284|gb|EFU21040.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta thermophila DSM 6578]
          Length = 584

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 12/81 (14%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAES---SRVETVI---AGGGKSF--FQITD 58
            E I+  I A E  E    A+  LI+N++DA +     +   +   +  G+S+   +I D
Sbjct: 466 PEDIV--IQADE--EHLKQALGNLIQNAIDAGAGKEQTITVRLLRTSRDGRSYATIEIRD 521

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+  ++  +    + T+K
Sbjct: 522 EGHGIPEDQQRLVFLPYYTTK 542


>gi|147774832|emb|CAN73445.1| hypothetical protein VITISV_016790 [Vitis vinifera]
          Length = 825

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 1  MK-IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR 41
          M+ I+ L E + + + +G I+   +  ++ELI NSLDA +++
Sbjct: 1  MRSIKPLPEAVHSSVRSGIILFDLTRVVEELIYNSLDAGATK 42


>gi|315446770|ref|YP_004079649.1| histidine kinase [Mycobacterium sp. Spyr1]
 gi|315265073|gb|ADU01815.1| histidine kinase [Mycobacterium sp. Spyr1]
          Length = 682

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 1  MKIRKL---SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFF--- 54
          MK  +L    + +     A E    P  A+ EL+ NSLDA++  V  V+           
Sbjct: 1  MKTYRLEAGDDHVQKL--AHE--NDPVRAVIELVWNSLDADAHHVTVVLHRNDTDVVVGA 56

Query: 55 QITDNGFGMTSEEIPMAVQ 73
          ++TD+G GM  E+I    +
Sbjct: 57 EVTDDGHGMAPEDIATEFK 75


>gi|312200493|ref|YP_004020554.1| ATP-binding region ATPase domain protein [Frankia sp. EuI1c]
 gi|311231829|gb|ADP84684.1| ATP-binding region ATPase domain protein [Frankia sp. EuI1c]
          Length = 515

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQIT 57
           M+  ++   + N+I         + A+ +L++NS+DA +  +   I   +       Q+ 
Sbjct: 13  MQAVRMDPALANRIGLH---HTLASAVADLVDNSIDARARAICIRILLASDAPVGL-QVI 68

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQN 115
           D+G GM    +  A+    T +  D        G  G  L   S+     + + SR    
Sbjct: 69  DDGRGMDLAAVDAAMMYAGTRQYGD-----TDLGHFGVGLKAASLSQADTVLICSRARGA 123


>gi|256421132|ref|YP_003121785.1| hypothetical protein Cpin_2091 [Chitinophaga pinensis DSM 2588]
 gi|256036040|gb|ACU59584.1| hypothetical protein Cpin_2091 [Chitinophaga pinensis DSM 2588]
          Length = 642

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
            P +A+ EL+ N+ DA +++V+  I      +  + DNG G+T E+  
Sbjct: 27 HSPEVALTELVSNAWDAGATKVDIFIPEHSGDYLTVADNGTGLTPEDFE 75


>gi|323356692|ref|YP_004223088.1| hypothetical protein MTES_0244 [Microbacterium testaceum StLB037]
 gi|323273063|dbj|BAJ73208.1| hypothetical protein MTES_0244 [Microbacterium testaceum StLB037]
          Length = 715

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKIS- 81
           +  + EL+ N+ DA+++ VE     GG   F +I+D+G GMT EE+         SK + 
Sbjct: 41  AAVVSELVANAWDADANLVEINWNAGGDDAFVEISDDGRGMTREELKRKFLTVGYSKRTT 100

Query: 82  ----DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKIS 129
                D       G +G    S+ +++  + + S         +I +   K  
Sbjct: 101 EGGLSDGYKRPFMGRKGIGKLSVFSIADTVEVHSARNGERNAFRIEVDELKKR 153


>gi|29826536|ref|NP_828842.1| putative DNA mismatch repair protein [Streptomyces avermitilis
          MA-4680]
 gi|29611334|dbj|BAC75377.1| putative DNA mismatch repair protein [Streptomyces avermitilis
          MA-4680]
          Length = 683

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 12/62 (19%)

Query: 13 QIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPM 70
          QIAA          + EL+ N+LDA ++ V+  +       +   +TDNG GMT++    
Sbjct: 34 QIAA----------VAELVWNALDANATLVDVELRRDWDAITQIVVTDNGHGMTTDRARA 83

Query: 71 AV 72
          A 
Sbjct: 84 AF 85


>gi|325967842|ref|YP_004244034.1| DNA topoisomerase VI subunit beta [Vulcanisaeta moutnovskia 768-28]
 gi|323707045|gb|ADY00532.1| DNA topoisomerase VI, B subunit [Vulcanisaeta moutnovskia 768-28]
          Length = 536

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 27  IKELIENSLDAESS-----RVETVIAGGGKSF----FQITDNGFGMTSEEIPMAVQR-HC 76
           I+EL+ENSLDA  +      ++  I    +S       + DNG G+  +EIP    R   
Sbjct: 38  IRELVENSLDATETFKILPSIKIYIDYANQSRSWISIYVEDNGIGIPGDEIPNVFGRVFY 97

Query: 77  TSKIS 81
           +SK  
Sbjct: 98  SSKYR 102


>gi|290957802|ref|YP_003488984.1| hypothetical protein SCAB_33361 [Streptomyces scabiei 87.22]
 gi|260647328|emb|CBG70433.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 622

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 34/137 (24%)

Query: 20  IERPSIAIK---------------ELIENSLDAESSRVETV-----IAGGGKSF-----F 54
           I  P++ +K               ELI+NS+DA+++ VE       +  G ++       
Sbjct: 10  IVSPALTVKAMRDSGYKNTAYALAELIDNSIDAKATLVEVFACENPVQVGSRTSHRVETI 69

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSKISD-DFSNIHTFGFRGEALP--SIGAVSHLTLMSR 111
            + DNG GM ++++  A+      K  D D ++    G  G  LP  S+   + L + S 
Sbjct: 70  AVLDNGHGMEAQQLRRAL------KYGDGDGADPGRIGRFGMGLPNSSMSQCTRLDVWSW 123

Query: 112 PPQNNTGAQIAISGEKI 128
                      +S E+I
Sbjct: 124 TNGAGNAMWTYLSLEEI 140


>gi|257051218|ref|YP_003129051.1| DNA topoisomerase VI subunit B [Halorhabdus utahensis DSM 12940]
 gi|256689981|gb|ACV10318.1| DNA topoisomerase VI, B subunit [Halorhabdus utahensis DSM 12940]
          Length = 807

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 61/191 (31%), Gaps = 46/191 (24%)

Query: 23  PSIAIKELIENSLDA--ESS---RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR-H 75
              A+KE ++NSLDA  E+     V   I   G      I DNG G+T E++P    +  
Sbjct: 43  LVTAVKEGVDNSLDACEEADIFPDVYVEIEDVGEYYRLVIEDNGPGITREQLPKVFGKLL 102

Query: 76  CTSKISDDFSNIHTFGFRGE---ALPSIGAV--SHLT------LMSRPPQNNTGAQIA-- 122
             S+      N      RG+    +    AV  S LT      + SR   +         
Sbjct: 103 YGSRFHKREQN------RGQQGIGIS--AAVLYSQLTSGKPAKITSRTKGSEEAHYFELI 154

Query: 123 ------ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                      +          GT +EV  L   + AR               D I+  A
Sbjct: 155 IDTDTNEPEIDVDETTTWDRPHGTRIEVE-LEANLRARQQLH-----------DYIKHTA 202

Query: 177 IAYPKVSFTFS 187
           +  P     F 
Sbjct: 203 VVNPHARIEFH 213


>gi|323693323|ref|ZP_08107541.1| hypothetical protein HMPREF9475_02404 [Clostridium symbiosum
           WAL-14673]
 gi|323502806|gb|EGB18650.1| hypothetical protein HMPREF9475_02404 [Clostridium symbiosum
           WAL-14673]
          Length = 488

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MKIRKLSEKIINQIAAGEII-ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           MK + +       I +   I      A+ ++I+NS+ A +  V+        ++  I DN
Sbjct: 1   MKTKSMPPYAPTLIESTRAIGYSLEAAVADIIDNSIAANAKNVDIYFFPVDGAYIAILDN 60

Query: 60  GFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNT 117
           G GMT EEI +A+Q    SK   +  +    G  G  L   S+     LT++S+   N  
Sbjct: 61  GKGMTEEEIDVAMQ--YGSKNPTEERDKKDLGRFGLGLKTASLSQCRCLTVISKQGDNLE 118

Query: 118 GAQIAISG 125
           G Q  I  
Sbjct: 119 GRQWDIDH 126


>gi|256374745|ref|YP_003098405.1| hypothetical protein Amir_0595 [Actinosynnema mirum DSM 43827]
 gi|255919048|gb|ACU34559.1| hypothetical protein Amir_0595 [Actinosynnema mirum DSM 43827]
          Length = 629

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 25/122 (20%)

Query: 29  ELIENSLDAESSRVETV-----IAGGGKSF-----FQITDNGFGMTSEEIPMAVQRHCTS 78
           ELI+NS+DA ++ VE       +    ++        + DNG GM SE +  A+      
Sbjct: 38  ELIDNSIDAGATLVEVFACESPVQVSSRTRQRVETIAVLDNGKGMDSETLRRAL------ 91

Query: 79  K----ISDDFSNIHTFGFRGEALP--SIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
           K    + DD   I  FG     LP  S+   + + + S            +   +I+  R
Sbjct: 92  KYGDGLGDDRKRIGRFGM---GLPNSSMSQCTRVEVWSWTNGPGNALYTYLDLAEINDGR 148

Query: 133 PV 134
             
Sbjct: 149 DA 150


>gi|257063787|ref|YP_003143459.1| DNA mismatch repair enzyme (predicted ATPase) [Slackia
           heliotrinireducens DSM 20476]
 gi|256791440|gb|ACV22110.1| DNA mismatch repair enzyme (predicted ATPase) [Slackia
           heliotrinireducens DSM 20476]
          Length = 360

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQR 74
           A + I     A+ E++ N+ DA +  V    A  G     +  D+  G+         + 
Sbjct: 42  AQQDIRSVEDAVIEMLRNARDAGARTVFVASAKSGAERTVVMVDDACGVPLNMWDTIFEP 101

Query: 75  HCTSKISDDFS-NIHTFGFRGEALPSI---GAVSHLTLMSRPPQNNTGAQIAISGEKISS 130
             TSK+      +    G RG AL SI     ++ +   S      +  ++     K++ 
Sbjct: 102 RVTSKLDSMLFDDWGVHG-RGMALYSIKQNATLAQVE--SSVEGGGSAFRVVFDTSKLTE 158

Query: 131 VRPVAMN 137
               +  
Sbjct: 159 RADQSTC 165


>gi|229056683|ref|ZP_04196087.1| hypothetical protein bcere0026_8030 [Bacillus cereus AH603]
 gi|228720619|gb|EEL72180.1| hypothetical protein bcere0026_8030 [Bacillus cereus AH603]
          Length = 494

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 31 IENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMA 71
          ++NS+DA++  +        G  + +I DNG GMT +E+  A
Sbjct: 32 VDNSIDAKAEYIHIEFEYDMGNGYIRIEDNGIGMTDDELQRA 73


>gi|295830067|gb|ADG38702.1| AT4G02460-like protein [Neslia paniculata]
          Length = 199

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G+  + I  V G     +   ++    ++  ++G+   P     R  A++ Y+FINGR V
Sbjct: 2   GSLKDNIITVFGMSTFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYLFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPVV+L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVVILDFIVPGGACDLNVTPDKRKVFFSDETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
             + +  +      S  +++   +S   D A  + L + + 
Sbjct: 121 GGLNEIYSSSN--ASYTVNRFEENSEQPDKAGVSSLQEKSN 159


>gi|300118608|ref|ZP_07056346.1| ATP-binding protein [Bacillus cereus SJ1]
 gi|298723997|gb|EFI64701.1| ATP-binding protein [Bacillus cereus SJ1]
          Length = 494

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 31 IENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMA 71
          ++NS+DA++  +        G  + +I DNG GMT +E+  A
Sbjct: 32 VDNSIDAKAEYIHIEFEYDMGNGYIRIEDNGIGMTDDELQRA 73


>gi|295830057|gb|ADG38697.1| AT4G02460-like protein [Capsella grandiflora]
          Length = 199

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G+  + I  V G     +   ++    ++  ++G+   P     R  A++ Y FINGR V
Sbjct: 2   GSLKDNIITVFGLSIFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPV +L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVAILDFIVPGGACDLNVTPDKRKVFFADETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           + + +  +      S  ++K   +S   D A  + L + ++
Sbjct: 121 EGLNEIYSSSN--ASYTVNKFEENSEQPDKAGVSSLQEKSS 159


>gi|295830063|gb|ADG38700.1| AT4G02460-like protein [Capsella grandiflora]
          Length = 199

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G+  + I  V G     +   ++    ++  ++G+   P     R  A++ Y FINGR V
Sbjct: 2   GSLKDNIITVFGMSTFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPV +L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVTILDFIVPGGACDLNVTPDKRKVFFADETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           + + K  +      S  +++   +S   D A  + L + ++
Sbjct: 121 EGLNKIYSSSN--ASYTVNRFEENSEQPDKAGVSSLQEKSS 159


>gi|326772740|ref|ZP_08232024.1| hypothetical protein HMPREF0059_01128 [Actinomyces viscosus C505]
 gi|326637372|gb|EGE38274.1| hypothetical protein HMPREF0059_01128 [Actinomyces viscosus C505]
          Length = 504

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 7  SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMT 64
             I + + A       S A+ +L++NS+DA +S+V   I       +   + D+G GM 
Sbjct: 17 DPSIADALGAH---HELSTALADLVDNSIDAGASQVRIRILTDDDYVTGVLVIDDGHGMD 73

Query: 65 SE--EIPMAVQR 74
              +  MA+ R
Sbjct: 74 EAGIDAAMALSR 85


>gi|148241091|ref|YP_001220592.1| hypothetical protein BBta_p0286 [Bradyrhizobium sp. BTAi1]
 gi|146411467|gb|ABQ39920.1| hypothetical protein BBta_p0286 [Bradyrhizobium sp. BTAi1]
          Length = 681

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTS----EEIPMAV 72
           P  A+ E + N+LDA+++ V   +     GG     + D+G G++     E+     
Sbjct: 21 DPIRALAEFVWNALDADATNVSVELNRNALGGLDAITVRDDGNGISRARAMEDFENLG 78


>gi|217969389|ref|YP_002354623.1| hypothetical protein Tmz1t_0961 [Thauera sp. MZ1T]
 gi|217506716|gb|ACK53727.1| conserved hypothetical protein [Thauera sp. MZ1T]
          Length = 587

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 11/71 (15%)

Query: 26 AIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          A+KEL++N+ DA++ +V  V+          I D+G GMT EE+     RH  S I+ D 
Sbjct: 28 ALKELVDNAWDADAEQVTIVLPKPLSGDPIVIQDDGTGMTEEELR----RHYLS-IAADR 82

Query: 85 SNIHTFGFRGE 95
           +      RGE
Sbjct: 83 RS-----RRGE 88


>gi|307595996|ref|YP_003902313.1| DNA topoisomerase VI subunit B [Vulcanisaeta distributa DSM 14429]
 gi|307551197|gb|ADN51262.1| DNA topoisomerase VI, B subunit [Vulcanisaeta distributa DSM 14429]
          Length = 539

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 27  IKELIENSLDAESS-----RVETVIAGGGKSF----FQITDNGFGMTSEEIPMAVQR-HC 76
           I+EL+ENSLDA  +      ++  I    +S       + DNG G+  +EIP    R   
Sbjct: 38  IRELVENSLDATETFKILPSIKIYIDYADQSRNWVSIYVEDNGIGIPGDEIPNVFGRVFY 97

Query: 77  TSKIS 81
           +SK  
Sbjct: 98  SSKYR 102


>gi|159041784|ref|YP_001541036.1| DNA topoisomerase VI subunit B [Caldivirga maquilingensis IC-167]
 gi|157920619|gb|ABW02046.1| DNA topoisomerase VI, B subunit [Caldivirga maquilingensis IC-167]
          Length = 528

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 16/188 (8%)

Query: 27  IKELIENSLDA----------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-H 75
           ++ELIEN+LDA          ++S +  V          + DNG G+  EEIP    +  
Sbjct: 40  VRELIENALDATENHGILPSIKAS-IRYVDKDKDLYSIYVEDNGIGIPEEEIPNVFGQIF 98

Query: 76  CTSKIS-DDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
            +SK        I   G +   L +       + + S    +       IS + + +   
Sbjct: 99  YSSKYKIKQHRGIFGLGAKMVVLYAQSTSGMPVRVTSSMKGSQYIYTYEISIDTVKNKPV 158

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           +  +    VE +  +     ++    + Q   + I +   R A+  P          +  
Sbjct: 159 IHSHVR--VENKYGWHGTAVKVVLEGNWQYAKSRIEEYFTRTAMITPYAEIILIEPNNEV 216

Query: 194 YKMNFQST 201
            + N  +T
Sbjct: 217 LRFNRITT 224


>gi|41614939|ref|NP_963437.1| DNA topoisomerase VI subunit B [Nanoarchaeum equitans Kin4-M]
 gi|40068663|gb|AAR38998.1| NEQ144 [Nanoarchaeum equitans Kin4-M]
          Length = 567

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 27 IKELIENSLDA--ESS---RVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
          +KEL++N+LDA  E+     ++  +  G     ++ DNG G+   E+P   
Sbjct: 34 VKELVDNALDATEEARILPTIKVTLKEGKYMTVRVEDNGPGIPFNEVPNVF 84


>gi|254444906|ref|ZP_05058382.1| hypothetical protein VDG1235_3149 [Verrucomicrobiae bacterium
          DG1235]
 gi|198259214|gb|EDY83522.1| hypothetical protein VDG1235_3149 [Verrucomicrobiae bacterium
          DG1235]
          Length = 659

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 19 IIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          I+  P  A+ EL+ N+ DA +  V+   +        ++DNG GMT +E 
Sbjct: 28 IVTDPITALVELVANAWDAGAKEVKIDWSADESGEIAVSDNGGGMTEDEF 77


>gi|197105891|ref|YP_002131268.1| hypothetical protein PHZ_c2430 [Phenylobacterium zucineum HLK1]
 gi|196479311|gb|ACG78839.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 507

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSRVETVIA--GGGKSF-FQITDNGFGMTSEEIPMA 71
           AAG        A+ +LI+NS+ A+++ +        GG      I DNG GM++EE+  A
Sbjct: 37  AAG---HTLVSAVADLIDNSISAQATEIHITFGQPNGGHGRWMTIRDNGVGMSAEELDEA 93

Query: 72  VQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGA 119
           ++       + D     + G  G  L   S        +++R    +   
Sbjct: 94  LRIGG----AAD-YGPRSLGKFGFGLKGASWSQARRFKVITRQAGGSIRH 138


>gi|322499462|emb|CBZ34535.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1007

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GYT  PT          VFIN R V+   I   I   Y+  +  G  P  VLLL +   +
Sbjct: 24  GYTSDPTLA-QRKQYLCVFINQRLVESAAIRKAIDAVYSGVLTGGHRPFTVLLLSVPTDR 82

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           VDVNVHP K  +   +  +I + + +  + A
Sbjct: 83  VDVNVHPTKKEVCLLDEELIVSRVAEVCRGA 113


>gi|146088024|ref|XP_001465972.1| mismatch repair protein [Leishmania infantum JPCM5]
 gi|134070073|emb|CAM68405.1| putative mismatch repair protein [Leishmania infantum JPCM5]
          Length = 1007

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
           GYT  PT          VFIN R V+   I   I   Y+  +  G  P  VLLL +   +
Sbjct: 24  GYTSDPTLA-QRKQYLCVFINQRLVESAAIRKAIDAVYSGVLTGGHRPFTVLLLSVPTDR 82

Query: 295 VDVNVHPAKSYIRFRNPTIIRNFIIQSIQKA 325
           VDVNVHP K  +   +  +I + + +  + A
Sbjct: 83  VDVNVHPTKKEVCLLDEELIVSRVAEVCRGA 113


>gi|90425780|ref|YP_534150.1| hypothetical protein RPC_4308 [Rhodopseudomonas palustris BisB18]
 gi|90107794|gb|ABD89831.1| hypothetical protein RPC_4308 [Rhodopseudomonas palustris BisB18]
          Length = 702

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 95/324 (29%), Gaps = 58/324 (17%)

Query: 1   MKIRKLSEKIINQIAAGEII---ERPSIAIKELIENSLDAESSRVETV------------ 45
           MKI +L    ++++     +   +R S  I EL+ NS DA+++ V               
Sbjct: 1   MKISRL---TVDKLG----VKLYDRASAVIAELVSNSYDADATEVRISAPMGQYLASKAG 53

Query: 46  --IAGGGKSFFQITDNGFGMTS-----------EEIPMAVQRHCTSKISDDFSNIHTFGF 92
             I   G     + DNG GM              +  +  +R  TSK           G 
Sbjct: 54  GQIIDKGFEII-VQDNGLGMDPRGMQEFFLVVGSDRRLDAKRGDTSK----LYGRKVMGR 108

Query: 93  RGEA-LPSIGAVSHLTLMS--------RPPQNNTGAQIAISGEKISSVRPVAMNPGTIVE 143
           +G   L   G    L ++S        R    NT      S   +     V  + G    
Sbjct: 109 KGVGKLAPFGICKTLEVISSGGEKVVRRQAGGNTETGYLTSHILLDYDDIVGDDDGDYQP 168

Query: 144 VRDLFFT--IPARLNFLKSEQVETNLITDV--IRRMAIAYPKVS---FTFSTIKSNRYKM 196
                     P+R   +K  +     + ++  + R       +    +      S     
Sbjct: 169 TVGSLDNSVQPSRGTTIKLSRFSYRRVPEIEHLSRQVAQRFGIRSDKWKVLLRDSTMTDG 228

Query: 197 NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI-N 255
              S        I+ + G              + ++  GY           +    F  +
Sbjct: 229 ANGSEVSVGEFDINVMEGTRIEF-MGPDGPTVSTVSADGYQARTPIGDLITSFNAGFSHD 287

Query: 256 GRTVQDKFILSTIRTAYAETIPLG 279
           GR    K  ++  R +Y + +  G
Sbjct: 288 GRFYPVKGWVAYARESYRDDLMAG 311


>gi|295830055|gb|ADG38696.1| AT4G02460-like protein [Capsella grandiflora]
          Length = 199

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G+  + I  V G     +   ++    ++  ++G+   P     R  A++ Y FINGR V
Sbjct: 2   GSLKDNIITVFGLSIFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPV +L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVAILDFIVPGXACDLNVTPDKRKVFFADETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           + + +  +      S  ++    +S   D A  + L + ++
Sbjct: 121 EGLNEIYSSSN--ASYTVNXFEENSEQPDKAGVSSLQEKSS 159


>gi|167045162|gb|ABZ09824.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG8K5]
          Length = 487

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 22  RPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
               A+ +L++NS+ A +S VE       G+    + D+G+GM+  E+  A  R   S  
Sbjct: 25  DLGSALADLVDNSIKATASIVEITCFWNDGQPVISVKDDGYGMSKAELHSA-MRLA-SID 82

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMN 137
             D       G  G  L   S      L++ S+      GA+  +   K   +  +   
Sbjct: 83  PRDERAAEDLGRFGLGLKTASFSQCRRLSVFSKRKGKTAGARWDLDDLKDKFLMEIPSP 141


>gi|83749187|ref|ZP_00946189.1| Hypothetical protein RRSL_00958 [Ralstonia solanacearum UW551]
 gi|207742685|ref|YP_002259077.1| hypothetical protein RSIPO_00875 [Ralstonia solanacearum IPO1609]
 gi|83724128|gb|EAP71304.1| Hypothetical protein RRSL_00958 [Ralstonia solanacearum UW551]
 gi|206594079|emb|CAQ61006.1| hypothetical protein RSIPO_00875 [Ralstonia solanacearum IPO1609]
          Length = 649

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 16 AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIP 69
          AG II  P+ AI EL+ N  DA ++ V+           F+I DNG GMT EE  
Sbjct: 17 AGAIITDPATAIVELVANCWDAYATEVKITWPDVQLEKQFKIADNGHGMTREEFQ 71


>gi|288930741|ref|YP_003434801.1| DNA topoisomerase VI subunit beta [Ferroglobus placidus DSM 10642]
 gi|288892989|gb|ADC64526.1| DNA topoisomerase VI, B subunit [Ferroglobus placidus DSM 10642]
          Length = 592

 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 43/186 (23%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV------ 72
             +KE ++NSLDA  E+     +   I   GK++   + DNG G+  EEIP         
Sbjct: 30  TCVKEAVDNSLDACEEAGILPDILVKIFRVGKNYRIIVEDNGPGIEKEEIPKVFGKLLYG 89

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSI---GAVSH---LTLMSRPPQNNTG-------A 119
            R  T K         + G +G  + S      +S      ++S+   +           
Sbjct: 90  SRFHTIK--------QSRGQQGIGISSAVLYAQISTGKPAKILSKVEGDEAYEIELFINT 141

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           +                  GT +E+  +   +  +             + + +R+ +I  
Sbjct: 142 KKNEPEIVSEKKVEWYAPHGTRIELEIVGSYVKEKRQS----------VYEYLRQTSIVN 191

Query: 180 PKVSFT 185
           P    T
Sbjct: 192 PHAKIT 197


>gi|78485984|ref|YP_391909.1| hypothetical protein Tcr_1643 [Thiomicrospira crunogena XCL-2]
 gi|78364270|gb|ABB42235.1| Conserved hypothetical protein [Thiomicrospira crunogena XCL-2]
          Length = 361

 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 18/178 (10%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE----IPMAVQRHCTSKIS 81
            + EL+ N+ DA +  V  +      S   + D+G GMT E          Q   T+   
Sbjct: 31  VLAELVANAYDANAKNVYIISDN---STITVEDDGNGMTYESGVKKFLNVAQESRTN--E 85

Query: 82  DDFSNIHT------FGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           +D     +       G +G   L ++  VS  + + +    + +G  ++    +  S+ P
Sbjct: 86  EDLYVEGSNRLRKKMGRKGVGKLAALA-VSKEVEVKTIRGGDKSGFILSREVGEDHSLEP 144

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
           +       + VRD    I  +    K  +       ++++   +              
Sbjct: 145 IEEEDIQFLSVRDHGTAIVMKAPQYKIHKTLNAAKKNLLKIFPLVNQDFQIHLQIGNK 202


>gi|3695293|gb|AAC62762.1| unknown [Phaeosphaeria nodorum]
          Length = 576

 Score = 57.4 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 92/280 (32%), Gaps = 17/280 (6%)

Query: 166 NLITDVIRRMAIAYPKVSFTFSTIKSNRYK---MNFQSTNGNFPERISQVIGEDFINNAV 222
             I  +++  A+A P V F    +K+   K   +    ++ N  + + +VI +D      
Sbjct: 1   MKIRRLMQAYALARPAVRFKLHVLKAKNNKGDFIYAPKSDSNVEDAVLKVISKDCALQCD 60

Query: 223 ELNEKSNEITLQGYTGIPTFNRGNANQFYVFI--NGRTVQD-KFILSTIRTAYAETIPLG 279
               +S+   +  +   PT NR     +  FI  + R V + +  +  +  A+ E +   
Sbjct: 61  WTALESDGFEIHAFLPKPTANRSKIANYGAFISIDSRPVSNSRGTIKQVVAAFKERLRKS 120

Query: 280 -------RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRN----FIIQSIQKAINK 328
                  + P   + +   P   D N+ PAK  + F +  ++       +     +AI +
Sbjct: 121 SQSLTAVKDPFFCMNIICPPDSYDPNIEPAKDDVMFDDSKVVLEVVDNLLRSHYPEAIME 180

Query: 329 KGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPT 388
             +   +   +   S   +  +               +E    Q ++             
Sbjct: 181 MEVEPPTSAQQHAGSDIEEIESHVPDPAHLKPPAEMVREPRSDQHSKDPRWRPSMYGIDE 240

Query: 389 YSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              ++   +       + G   A +   + I++    +  
Sbjct: 241 EDLEHIQEDHPLVIEEEEGRLAADVSNPWTIARMNASIKP 280


>gi|119872357|ref|YP_930364.1| DNA topoisomerase VI subunit B [Pyrobaculum islandicum DSM 4184]
 gi|119673765|gb|ABL88021.1| DNA topoisomerase VI, B subunit [Pyrobaculum islandicum DSM 4184]
          Length = 528

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 18/77 (23%)

Query: 21  ERPSIA----IKELIENSLDAESSR---------VETVIAGG--GKSFFQITDNGFGMTS 65
             P+ A    I+EL+ENSLDA  +          +   I     G +   + DNG G+  
Sbjct: 26  HNPARALYQTIRELVENSLDA--TETYGILPNIYIRVSIEDEQKGWASVYVEDNGIGIPG 83

Query: 66  EEIPMAVQR-HCTSKIS 81
            EIP    R   +SK  
Sbjct: 84  NEIPNVFGRVFYSSKYK 100


>gi|294101440|ref|YP_003553298.1| histidine kinase [Aminobacterium colombiense DSM 12261]
 gi|293616420|gb|ADE56574.1| histidine kinase [Aminobacterium colombiense DSM 12261]
          Length = 185

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 32 ENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          ENS++A ++ V+  I     GG  +F++ DNG GM  + +        TS
Sbjct: 14 ENSINAGATWVDIRITEDCAGGWLYFEVKDNGKGMDGDTLLAVTDPFYTS 63


>gi|291288021|ref|YP_003504837.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885181|gb|ADD68881.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 453

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS DA ++++    A  G      + DNG G+         +   T+K
Sbjct: 361 LINNSYDAGATKIHISFAMDGDIITITVQDNGTGIPEGSRDKIFRPFYTTK 411


>gi|119719576|ref|YP_920071.1| DNA topoisomerase VI subunit B [Thermofilum pendens Hrk 5]
 gi|119524696|gb|ABL78068.1| DNA topoisomerase VI, B subunit [Thermofilum pendens Hrk 5]
          Length = 516

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 23 PSIAIKELIENSLDAESSR-----VETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
             A++EL+ENSLDA  +      ++  I            ++ DNG G+   E+P    
Sbjct: 30 LYQAVRELVENSLDATETHGILPFIDVEIRLHEERPEWVVLRVADNGIGIPLSEVPNVFG 89

Query: 74 R-HCTSK 79
          R    SK
Sbjct: 90 RVFYGSK 96


>gi|297159205|gb|ADI08917.1| hypothetical protein SBI_05797 [Streptomyces bingchenggensis BCW-1]
          Length = 651

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 31  IENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++NS+ A+++ V   +   G +S+ +I+DNG GM +E +  A +         D     T
Sbjct: 210 VDNSVSADATTVHVTVHFDGTRSWIRISDNGRGMDAETLSEAFR------YGSDREYNRT 263

Query: 90  -FGFRGEAL--PSIGAVSHLTLMSRP 112
             G  G  L   S      LT++SR 
Sbjct: 264 ELGRFGFGLKSASTSQCRKLTVLSRA 289


>gi|295830059|gb|ADG38698.1| AT4G02460-like protein [Capsella grandiflora]
          Length = 199

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G   + I  V G     +   ++    ++  ++G+   P     R  A++ Y FINGR V
Sbjct: 2   GLLKDNIITVFGMSTFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPV +L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVAILDFIVPGGACDLNVTPDKRKVFFADETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           + + +  +      S  +++   +S   D A  + L + ++
Sbjct: 121 EGLNEIYSSSN--ASYTVNRFEENSEQPDKAGVSSLQEKSS 159


>gi|315186945|gb|EFU20703.1| histidine kinase [Spirochaeta thermophila DSM 6578]
          Length = 207

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 23 PSIAIKELIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           S  I EL++NSL+A +  +E       G  +  ++ D+G GM+ EE   A+    T
Sbjct: 5  LSDLILELVQNSLEAGARTIEVFCSTREGWCT-VRVKDDGRGMSPEEKERALDPFFT 60


>gi|320007879|gb|ADW02729.1| ATP-binding region ATPase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 491

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 25/120 (20%)

Query: 14  IAAGE---IIERPSI-------AIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFG 62
           IAA E   ++   S        AI +L++NS+ A +S ++      G+     + D+G G
Sbjct: 5   IAAPEPAGMVASLSSLGYSLPAAIADLVDNSVSAGASTIDVEFTWAGQDSWIAVADDGAG 64

Query: 63  MTSEEIPMA---VQRH-CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQN 115
           MT+ E+  A     R   T + S D       G  G  L S  + S    LT+ +     
Sbjct: 65  MTASELVTAMTVAARGPATPRSSTDL------GRFGVGLKS-ASFSQARQLTVATATSDE 117


>gi|322797579|gb|EFZ19621.1| hypothetical protein SINV_14574 [Solenopsis invicta]
          Length = 285

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 1/222 (0%)

Query: 263 FILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSI 322
            I   +   Y+  +P   +P   + L+I+P+ +DVNVHP K  +RF +   I   +  ++
Sbjct: 1   AIRRMLEDLYSVYLPKKAHPWCYISLDINPQNIDVNVHPTKHEVRFLHEDAIIERMKFAL 60

Query: 323 QKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT-SLTNTQEKLFLQENRLSTNDL 381
            + +     S +  L  ++  +       +  LP+Y   +  N  +K++ +E   + +  
Sbjct: 61  DERLAGNSASRTFYLQARLPKADITKEVLEEVLPEYNKGNPDNKSKKIYAKEMIRTDSSD 120

Query: 382 LPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFE 441
              D   ++   +  ++ E       IA     Q Y      D L    + +   +    
Sbjct: 121 QKLDKFNFTIHFEQPDDPEEDKPVDVIADKARKQVYQYFGNRDILERTQKSSEKRKEQTL 180

Query: 442 KMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRL 483
            +  D      +S +  +     L         E  + + + 
Sbjct: 181 NITNDNTKEVESSVSNASQSQGVLSAETNVPTDESLKSIQQF 222


>gi|297623817|ref|YP_003705251.1| integral membrane sensor signal transduction histidine kinase
           [Truepera radiovictrix DSM 17093]
 gi|297164997|gb|ADI14708.1| integral membrane sensor signal transduction histidine kinase
           [Truepera radiovictrix DSM 17093]
          Length = 521

 Score = 57.0 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+L+A +++V+  +   G+    ++ DNG G+    +P    R  
Sbjct: 397 RLKQVLLNLVQNALNAGATQVDVSLTLEGRRARLEVLDNGPGIPEGALPKLFDRFY 452


>gi|332981826|ref|YP_004463267.1| histidine kinase [Mahella australiensis 50-1 BON]
 gi|332699504|gb|AEE96445.1| histidine kinase [Mahella australiensis 50-1 BON]
          Length = 176

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 30 LIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCT 77
          LI+NS+ A +S ++  I   G     ++ DNG GM ++ +  AV    T
Sbjct: 11 LIQNSISAGASLIKVSIVRDGDMLSIEVDDNGCGMDADAVAKAVDPFFT 59


>gi|213417422|ref|ZP_03350564.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 272

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 62/197 (31%), Gaps = 3/197 (1%)

Query: 327 NKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDD 386
                  +   + +  ++    +          ++      +   Q+ +      L    
Sbjct: 13  RNHFAVPAEPTAAREPATPRYSDGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRTLLQTP 72

Query: 387 PTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQD 446
            T           +      G     +  +  + +    + ++    A   L   ++   
Sbjct: 73  TTSPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQL--T 130

Query: 447 FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSK 506
              + + +Q LL P  + +   E A + +    L  LGI+ +      + IR +P  L +
Sbjct: 131 PGQSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTIRAVPLPLRQ 189

Query: 507 KNIPQLLRDIIDEIIDS 523
           +N+  L+ ++I  +   
Sbjct: 190 QNLQILIPELIGYLAQQ 206


>gi|237737313|ref|ZP_04567794.1| histidine Kinase [Fusobacterium mortiferum ATCC 9817]
 gi|229421175|gb|EEO36222.1| histidine Kinase [Fusobacterium mortiferum ATCC 9817]
          Length = 706

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNG 60
          KIR  S  II+ I    II+  S  + ELI+NS DA++  V   +   G+     I D+G
Sbjct: 4  KIRP-SSNIIDSIGKNLIIDEISAIV-ELIKNSYDADAENVIINLEKNGEDLIITIEDDG 61

Query: 61 FGMT 64
           GM+
Sbjct: 62 HGMS 65


>gi|167747920|ref|ZP_02420047.1| hypothetical protein ANACAC_02650 [Anaerostipes caccae DSM 14662]
 gi|167652651|gb|EDR96780.1| hypothetical protein ANACAC_02650 [Anaerostipes caccae DSM 14662]
          Length = 322

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSRVETV---IAGGGK--SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A +S+ E     +   G+  +   + D G G+  EE+P   + + T+K
Sbjct: 211 LLNNAIEASASKGEIKLTCVEQAGRRQTVISVEDKGCGIPKEELPYLFEPYHTTK 265


>gi|237745764|ref|ZP_04576244.1| LOW QUALITY PROTEIN: hsp90-like protein [Oxalobacter formigenes
          HOxBLS]
 gi|229377115|gb|EEO27206.1| LOW QUALITY PROTEIN: hsp90-like protein [Oxalobacter formigenes
          HOxBLS]
          Length = 225

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 14/77 (18%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          I +LSEKI  QI A          + ELI+N+ DA ++ V   +         I DNG G
Sbjct: 8  ISELSEKIPTQIVA----------LNELIKNAYDAFATEVSIFLDLSNGKLI-IRDNGKG 56

Query: 63 MTSEEIPMAVQRHCTSK 79
          M  E++         SK
Sbjct: 57 MNEEDVENLF---HLSK 70


>gi|261366516|ref|ZP_05979399.1| sensor protein ResE [Subdoligranulum variabile DSM 15176]
 gi|282571788|gb|EFB77323.1| sensor protein ResE [Subdoligranulum variabile DSM 15176]
          Length = 345

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 20  IERPSIAIKELIENSLD---AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   A ++ +              ++DNG G+  E++P   +R 
Sbjct: 239 IEAISNIVK----NAFDHTKAGAT-IRIAWRAFASMVQIIVSDNGSGIHPEDLPHIFKRF 293

Query: 76  CTSKISDDFSNIHTFG 91
             S+ S D   I   G
Sbjct: 294 YRSRFSKDTQGIG-LG 308


>gi|76802379|ref|YP_327387.1| DNA topoisomerase VI subunit B [Natronomonas pharaonis DSM 2160]
 gi|121696732|sp|Q3IPW6|TOP6B_NATPD RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|76558244|emb|CAI49832.1| DNA topoisomerase VI subunit B (type II DNA topoisomerase)
           [Natronomonas pharaonis DSM 2160]
          Length = 798

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 45/193 (23%)

Query: 23  PSIAIKELIENSLDAESSR------VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR- 74
              A+KE ++N+LDA +        +   I   G      + DNG G+T E+IP    + 
Sbjct: 50  LVTAVKEAVDNALDA-AEEAGILPDIYVEIEDRGDYYRLTVEDNGPGITKEQIPKVFGKL 108

Query: 75  ------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTG-- 118
                 H             T G +G  +    AV  S LT      + S+   +++   
Sbjct: 109 LYGSRFHA---------REQTRGQQGIGIS--AAVLYSQLTSGKPAKITSKTDSHSSAQY 157

Query: 119 ------AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                                     GT +E+  +   + AR       +    +     
Sbjct: 158 FELTIDTDTNEPEIDHEREATWERPHGTRIELE-MEGNMRARKQLHDYIKYTAVVNPHA- 215

Query: 173 RRMAIAYPKVSFT 185
            R+    P+ SF 
Sbjct: 216 -RVEFHEPEDSFK 227


>gi|227502122|ref|ZP_03932171.1| possible ATP-binding protein [Corynebacterium accolens ATCC
          49725]
 gi|227077181|gb|EEI15144.1| possible ATP-binding protein [Corynebacterium accolens ATCC
          49725]
          Length = 500

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 18/81 (22%)

Query: 2  KIRKLSEKIINQ-------IAAGEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKS 52
           I     + I         I +G         I EL++NS+DA++ ++  V  + G   +
Sbjct: 13 TIHLTPTESIQHALGANHDICSG---------IDELVDNSIDAKAEKICIVFHVEGNRLT 63

Query: 53 FFQITDNGFGMTSEEIPMAVQ 73
             + D+G GM +  +   ++
Sbjct: 64 QIAVHDDGRGMDTATMERVLR 84


>gi|114703019|ref|XP_001175436.1| PREDICTED: similar to PMS3, partial [Pan troglodytes]
          Length = 33

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 73  QRHCTSKISD--DFSNIHTFGFRGEALPSIGAV 103
            +H TSKI +  D   + TFGFRGEAL S+ A+
Sbjct: 1   LKHHTSKIQEFADVPQVETFGFRGEALSSLCAL 33


>gi|156045195|ref|XP_001589153.1| hypothetical protein SS1G_09786 [Sclerotinia sclerotiorum 1980]
 gi|154694181|gb|EDN93919.1| hypothetical protein SS1G_09786 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 94

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 557 MNRLLREMEKNPNSSQCNHGRPTFIKL 583
           M +++R M +      C HGRPT   L
Sbjct: 1   MEKVVRHMGEIEQPWNCPHGRPTMRHL 27


>gi|210633080|ref|ZP_03297647.1| hypothetical protein COLSTE_01555 [Collinsella stercoris DSM 13279]
 gi|210159234|gb|EEA90205.1| hypothetical protein COLSTE_01555 [Collinsella stercoris DSM 13279]
          Length = 362

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           I+     + E++ N+ DA +  +        G       D+G G+  E          TS
Sbjct: 47  IQHVEDIVVEMLRNARDAGARSIYIATSKEEGVRTLLFIDDGSGVPEEMRERIFDARVTS 106

Query: 79  KISD---DFSNIHTFGFRGEALPSI 100
           K+     D   +H  G RG AL SI
Sbjct: 107 KLESMKMDRWGVH--G-RGMALFSI 128


>gi|94264184|ref|ZP_01287981.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93455442|gb|EAT05640.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 492

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 12/131 (9%)

Query: 4   RKLSEKIINQIAA----GEIIERPSIAIKELIENSLDAESSRVETVIAGGGKS-FFQITD 58
           ++L     +  A+    G        AI +LI+NS+ AE+++V       G+S    I D
Sbjct: 5   QRLPPSAASLSASMRDLG---YSLETAIADLIDNSISAEATQVGIYCDSTGESPTLAIID 61

Query: 59  NGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNN 116
           NG GM ++EI +A  RH T+    +       G  G  L   S      LT++S      
Sbjct: 62  NGKGMNNKEI-LAAMRHGTANPRSE-RAPSDLGRFGLGLKTASFSQCRRLTVISAHNGAQ 119

Query: 117 TGAQIAISGEK 127
            GA+  +    
Sbjct: 120 CGAEWNLDLID 130


>gi|313126397|ref|YP_004036667.1| DNA topoisomerase vi, b subunit [Halogeometricum borinquense DSM
           11551]
 gi|312292762|gb|ADQ67222.1| DNA topoisomerase VI, B subunit [Halogeometricum borinquense DSM
           11551]
          Length = 800

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 41/188 (21%)

Query: 23  PSIAIKELIENSLDAESSR-------VETVIAGGG--KSFFQITDNGFGMTSEEIPMAVQ 73
              A+KE ++N+LDA  +        +   I   G   +   + DNG G+T E+IP    
Sbjct: 47  LVTAVKEAVDNALDA--TEEAGIKPDISVEIRESGDYYTLI-VEDNGPGITKEQIPKVFG 103

Query: 74  R-------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTG 118
           +       H             + G +G  +    AV  S LT      + SR   ++  
Sbjct: 104 KLLYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGKPAKVTSRTQGDSAA 152

Query: 119 --AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
              ++ I  +       V                    +    + +    L  D ++  A
Sbjct: 153 QYFELIIDTDTNEPEIQVEHELAPGESDLSPTHGTRIEVEMEANMRARQQLH-DYVKHTA 211

Query: 177 IAYPKVSF 184
           +  P    
Sbjct: 212 VVNPHARL 219


>gi|325066200|ref|ZP_08124873.1| hypothetical protein AoriK_00185 [Actinomyces oris K20]
          Length = 504

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 30 LIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSE--EIPMAVQR 74
          L++NS+DA +S+V   I       +   + D+G GM     +  MA+ R
Sbjct: 37 LVDNSIDAGASQVRIRILTDDDYVTGMLVIDDGHGMDEAGIDAAMALSR 85


>gi|149922169|ref|ZP_01910608.1| hypothetical protein PPSIR1_01022 [Plesiocystis pacifica SIR-1]
 gi|149817013|gb|EDM76497.1| hypothetical protein PPSIR1_01022 [Plesiocystis pacifica SIR-1]
          Length = 569

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 28  KELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           +ELI+NSLDA S  VE   +  GGK    + D G GM  E I   + R  +S    D + 
Sbjct: 28  RELIQNSLDAGSQEVEIDFVHEGGKLVVHVNDWGAGMNREIIDTRLTRLFSSSKDGDRTK 87

Query: 87  IHTFGFRGEALPSIGAVSHLTL 108
           I  FG        IG VS   +
Sbjct: 88  IGKFG--------IGFVSVFAI 101


>gi|254518452|ref|ZP_05130508.1| predicted protein [Clostridium sp. 7_2_43FAA]
 gi|226912201|gb|EEH97402.1| predicted protein [Clostridium sp. 7_2_43FAA]
          Length = 649

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
           M  R +++ + ++I     IE  SI I ELI+NS DA + +V    +   K+   I DNG
Sbjct: 12  MGPRTITDALGSKI-----IELDSIVIAELIKNSKDAHAKKVTINFSDY-KNSITIWDNG 65

Query: 61  FGMTSEEIP----MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            GM+ EEI     +          ++  + + T G +G    SI  + +  T++++   +
Sbjct: 66  DGMSIEEIKDKWGVVAS-------NNKSNEVDTLGGKGIGRFSIFKLCNSFTIITKKEHS 118

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVE 143
           N   +     + + + +       +I+E
Sbjct: 119 NE-YKFTFDIKDLYNHKSAEDYTISIIE 145


>gi|268571263|ref|XP_002648706.1| Hypothetical protein CBG25094 [Caenorhabditis briggsae]
          Length = 295

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFG 62
            L+   ++Q         P  AI E ++NS DA +      +         +I D+G G
Sbjct: 19 HLLNNSTVHQ--------SPQSAIAEFVDNSYDANAKNCSIEVYDTPNNERIEILDDGDG 70

Query: 63 MTSEEIPMAVQRHCTSKISDDFSNIHTFG 91
          MT  E    V+   ++K+ +    I  +G
Sbjct: 71 MTRSEALNIVKFGFSNKVDN---AIGRYG 96


>gi|295830065|gb|ADG38701.1| AT4G02460-like protein [Capsella grandiflora]
          Length = 199

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 203 GNFPERISQVIGEDFINNAVELNEKS-NEITLQGYTGIPTFN--RGNANQFYVFINGRTV 259
           G+  + I  V G     +   ++    ++  ++G+   P     R  A++ Y FINGR V
Sbjct: 2   GSLKDNIITVFGLSXFTSLQPVSISISDDCRVEGFLSKPGQGTGRNLADRQYFFINGRPV 61

Query: 260 QDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFII 319
               +   +   Y +T    +YPV +L   +     D+NV P K  + F + T +   + 
Sbjct: 62  DMPKVSKLVNELYKDT-SSRKYPVAILDFIVPGGACDLNVTPDKRKVFFADETSVIGSLR 120

Query: 320 QSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYAT 360
           + + +  +      S  +++   +S   D A  + L + ++
Sbjct: 121 EGLNEIYSSSN--ASYXVNRFEENSEQPDKAGVSSLQEKSS 159


>gi|156937878|ref|YP_001435674.1| DNA topoisomerase VI subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566862|gb|ABU82267.1| DNA topoisomerase VI, B subunit [Ignicoccus hospitalis KIN4/I]
          Length = 553

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 48/211 (22%)

Query: 27  IKELIENSLDAESS-----RVETVIAG--------------------GGKSFFQITDNGF 61
           +KE+++NSLDA  +     R+  VI                       G     + DNG 
Sbjct: 44  VKEMLDNSLDATETHGILPRITIVIERLNEAKASKEEEEKKEIKGSKDGIYRITVDDNGI 103

Query: 62  GMTSEEIPMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLTLMSRPPQNNTG 118
           G+  ++IP A  R   +SK  +      T+G     L    AV  +      +       
Sbjct: 104 GVPQDKIPYAFGRMLYSSKYVE-RQTRGTYG-----LGVKAAVLYAQ-----KTTGEPAT 152

Query: 119 AQIAISGEKISSVRPVAMNPGT---------IVEVRDLFFTIPARLNFLKSEQVETNLIT 169
              +   +K++    V+ N  T                +      +    + +   + + 
Sbjct: 153 VISSPIKDKMTYRFKVSTNISTNEPDVKERGSWTKSGDWHGTRVSVIIEGNWRRARSKVV 212

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQS 200
           + +RR AI  P    T  T      +   ++
Sbjct: 213 EYVRRTAIVAPYADITLITPDGTLIRYPRRT 243


>gi|317490508|ref|ZP_07948988.1| hypothetical protein HMPREF1023_02688 [Eggerthella sp. 1_3_56FAA]
 gi|316910401|gb|EFV32030.1| hypothetical protein HMPREF1023_02688 [Eggerthella sp. 1_3_56FAA]
          Length = 361

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
            + I + E        + E++ N+ DA +  +   +   G +    + D+G G+ +    
Sbjct: 43  AHDIRSTE------DIVIEMLRNARDAHAKSIFLAVSREGQRRRLVMIDDGDGVPAAMHE 96

Query: 70  MAVQRHCTSKISD---DFSNIHTFGFRGEALPSIG 101
              +   TSK+     D   IH  G RG AL SI 
Sbjct: 97  RIFEPRVTSKLDSMHMDKWGIH--G-RGMALYSIA 128


>gi|292655721|ref|YP_003535618.1| DNA topoisomerase VI subunit B [Haloferax volcanii DS2]
 gi|291371984|gb|ADE04211.1| DNA topoisomerase VI subunit B [Haloferax volcanii DS2]
          Length = 798

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 57/188 (30%), Gaps = 40/188 (21%)

Query: 23  PSIAIKELIENSLDAESSR-------VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR 74
              A+KE ++N+LDA  +        +   IA  G      I DNG G+T E++P    +
Sbjct: 47  LVTAVKEAVDNALDA--TEEAGIQPDIYVEIAEAGDYYRLVIEDNGPGITKEQVPKVFGK 104

Query: 75  -------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGA 119
                  H             + G +G  +    AV  S LT      + SR   +    
Sbjct: 105 LLYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGKPAKVTSRTQGSEDAE 153

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
              +      +   +     T     D        L    + +    L  D I   A+  
Sbjct: 154 YFELVINTDQNEPEIRTEKTTSW---DRPHGTRIELEMEANMRARQQLH-DYILHTAVVN 209

Query: 180 PKVSFTFS 187
           P       
Sbjct: 210 PHARIELR 217


>gi|297527443|ref|YP_003669467.1| DNA topoisomerase VI, B subunit [Staphylothermus hellenicus DSM
          12710]
 gi|297256359|gb|ADI32568.1| DNA topoisomerase VI, B subunit [Staphylothermus hellenicus DSM
          12710]
          Length = 531

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 22 RPSIA----IKELIENSLDA-ESS----RVETVIAGGGK----SFFQITDNGFGMTSEEI 68
           P+ A    ++EL+EN+LDA ++      ++  I    +        + DNG G+    +
Sbjct: 31 NPARALYQTVRELVENALDATDAHGILPNIKITIEKADQVHEYYKITVEDNGIGIPPHIV 90

Query: 69 PMAVQR 74
          P A  R
Sbjct: 91 PKAFGR 96


>gi|325831500|ref|ZP_08164754.1| hypothetical protein HMPREF9404_5157 [Eggerthella sp. HGA1]
 gi|325486754|gb|EGC89202.1| hypothetical protein HMPREF9404_5157 [Eggerthella sp. HGA1]
          Length = 361

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
            + I + E        + E++ N+ DA +  +   +   G +    + D+G G+ +    
Sbjct: 43  AHDIRSTE------DIVIEMLRNARDAHAKSIFLAVSREGQRRRLVMIDDGDGVPAAMHE 96

Query: 70  MAVQRHCTSKISD---DFSNIHTFGFRGEALPSIG 101
              +   TSK+     D   IH  G RG AL SI 
Sbjct: 97  RIFEPRVTSKLDSMHMDKWGIH--G-RGMALYSIA 128


>gi|311896960|dbj|BAJ29368.1| putative two-component system sensor kinase [Kitasatospora setae
           KM-6054]
          Length = 754

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 29  ELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           EL++N+ DA++S V     G    G+   ++ DNG GM+ + +        TS       
Sbjct: 34  ELVKNAYDADASLVLIRFIGPLVEGQGAIEVWDNGHGMSPDTVRGTWLEIATS-FRQRAP 92

Query: 86  NIHTFGFR-----GEALPSIGAVSHLT-LMSRPPQNNTGA 119
              + G R     G    S   ++ +T L +R    +   
Sbjct: 93  RSESLGRRVLGAKGIGRFSAARLASVTELTTRRVDGSETT 132


>gi|257791367|ref|YP_003181973.1| hypothetical protein Elen_1616 [Eggerthella lenta DSM 2243]
 gi|257475264|gb|ACV55584.1| hypothetical protein Elen_1616 [Eggerthella lenta DSM 2243]
          Length = 361

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
            + I + E        + E++ N+ DA +  +   +   G +    + D+G G+ +    
Sbjct: 43  AHDIRSTE------DIVIEMLRNARDAHAKSIFLAVSREGQRRRLVMIDDGDGVPAAMHE 96

Query: 70  MAVQRHCTSKISD---DFSNIHTFGFRGEALPSIG 101
              +   TSK+     D   IH  G RG AL SI 
Sbjct: 97  RIFEPRVTSKLDSMHMDKWGIH--G-RGMALYSIA 128


>gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS]
 gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS]
          Length = 399

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 15/96 (15%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
            ++ LI+N++   DAES RV       G S   ++ DNG G+   ++    +R       
Sbjct: 293 VVRNLIDNAIKYVDAESGRVRVSAYATGDSVSIEVADNGIGIPQADLDRIFERFY----R 348

Query: 82  DDFSNIHTFGFRGEALPSI------GAVSHLTLMSR 111
            D +     G  G  L SI           + + SR
Sbjct: 349 VDKARSRELGGTGLGL-SIVKHIVLAHKGKVEVRSR 383


>gi|326779118|ref|ZP_08238383.1| ATP-binding region ATPase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326659451|gb|EGE44297.1| ATP-binding region ATPase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 509

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 29/128 (22%)

Query: 4   RKLSEKIINQIAAGEIIERPS-------IAIKELIENSLDAESSRVETVIAGGGKSFF-- 54
           ++L         A   +E  +        A+ +L++NS+DA +  V        +     
Sbjct: 20  KRLPP-------AARYVESLTHQGYGFEAAVADLVDNSIDAGARNVVISFLRDDQRLVGL 72

Query: 55  QITDNGFGMTSEEIPMA---VQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLM 109
            + D+G GM  E +  A     R              + G  G  L   S+     LT++
Sbjct: 73  LVVDDGSGMNDETLDTAMTVGGR--------QEYGDGSLGHFGAGLKAASLSHADSLTVI 124

Query: 110 SRPPQNNT 117
           SR  ++ +
Sbjct: 125 SRTKRSPS 132


>gi|182438472|ref|YP_001826191.1| hypothetical protein SGR_4679 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466988|dbj|BAG21508.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 509

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 29/128 (22%)

Query: 4   RKLSEKIINQIAAGEIIERPS-------IAIKELIENSLDAESSRVETVIAGGGKSFF-- 54
           ++L         A   +E  +        A+ +L++NS+DA +  V        +     
Sbjct: 20  KRLPP-------AARYVESLTHQGYGFEAAVADLVDNSIDAGARNVVISFLRDDQRLVGL 72

Query: 55  QITDNGFGMTSEEIPMA---VQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLM 109
            + D+G GM  E +  A     R              + G  G  L   S+     LT++
Sbjct: 73  LVVDDGSGMNDETLDTAMTVGGR--------QEYGDGSLGHFGAGLKAASLSHADSLTVI 124

Query: 110 SRPPQNNT 117
           SR  ++ +
Sbjct: 125 SRTKRSPS 132


>gi|302809914|ref|XP_002986649.1| hypothetical protein SELMODRAFT_6462 [Selaginella moellendorffii]
 gi|300145537|gb|EFJ12212.1| hypothetical protein SELMODRAFT_6462 [Selaginella moellendorffii]
          Length = 131

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQIT--------DNGFGMTSEEIPMAVQR 74
             A+ ELI+N+ DA + R+E  I  G     +++        D+G GMT ++I   V  
Sbjct: 20 LFGAVAELIDNACDAGAKRLEISIQKGTLKSPEVSEVPMLCFLDDGLGMTHKDIVKMVSF 79

Query: 75 HCTSKISDDFSNIHTFG 91
                 DD   I  FG
Sbjct: 80 GHKKPEQDDPEQIGRFG 96


>gi|326385178|ref|ZP_08206845.1| DNA mismatch repair enzyme ( ATPase) [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326196082|gb|EGD53289.1| DNA mismatch repair enzyme ( ATPase) [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 500

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 7  SEKIINQIA----AGEII-----ERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQ 55
          S  ++ +I     AG +           AI +L++NS+DA +SRV   +  +    +  +
Sbjct: 4  SNDVVERIKLAPDAGLVKSLGANHTLESAIADLVDNSIDAGASRVSIRLLTSDDRLTQVE 63

Query: 56 ITDNGFGMTS 65
          + DNG GM +
Sbjct: 64 VLDNGRGMDA 73


>gi|149917108|ref|ZP_01905608.1| chaperone protein HtpG [Plesiocystis pacifica SIR-1]
 gi|149822024|gb|EDM81417.1| chaperone protein HtpG [Plesiocystis pacifica SIR-1]
          Length = 584

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 24/111 (21%)

Query: 8   EKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA----------GGGKSFFQIT 57
           + +++Q         P   ++ELI+N++DA SS ++  I             G    +I 
Sbjct: 21  DNLVHQ------FSDPWSFLRELIQNAIDAGSSEIDVHIEHQPPDDPSGDDPGLMVIEIV 74

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTL 108
           D G GM  + I   + R  +S    D++ I  FG        IG VS   +
Sbjct: 75  DTGEGMDRDIIDTRLTRLFSSAKDGDYTKIGRFG--------IGFVSVFAI 117


>gi|15897847|ref|NP_342452.1| DNA topoisomerase VI subunit B [Sulfolobus solfataricus P2]
 gi|284175656|ref|ZP_06389625.1| DNA topoisomerase VI subunit B [Sulfolobus solfataricus 98/2]
 gi|21264094|sp|Q97ZF0|TOP6B_SULSO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|13814150|gb|AAK41242.1| DNA topoisomerase VI subunit B (top6B) [Sulfolobus solfataricus
          P2]
 gi|261602555|gb|ACX92158.1| DNA topoisomerase VI, B subunit [Sulfolobus solfataricus 98/2]
          Length = 530

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22 RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
           P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 27 NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDESRQIYKVNVVDNGIGIPPQ 84

Query: 67 EIPMAVQR-HCTSK 79
          E+P A  R   +SK
Sbjct: 85 EVPNAFGRVLYSSK 98


>gi|309790031|ref|ZP_07684605.1| Signal transduction histidine kinase regulating C4-dicarboxylate
          transport system [Oscillochloris trichoides DG6]
 gi|308227886|gb|EFO81540.1| Signal transduction histidine kinase regulating C4-dicarboxylate
          transport system [Oscillochloris trichoides DG6]
          Length = 738

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 29 ELIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIP 69
          EL++N  DA++++V+ VI G   +     ++ DNG GM+ ++I 
Sbjct: 33 ELVKNGYDADATQVDIVILGLSTTESTRIEVRDNGSGMSRDDIE 76


>gi|256081173|ref|XP_002576847.1| microrchidia 2a [Schistosoma mansoni]
 gi|238662133|emb|CAZ33084.1| microrchidia 2a, putative [Schistosoma mansoni]
          Length = 847

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 23 PSIAIKELIENSLDAESSRVET-VIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             AI ELI+N+ DA ++ ++   I      G       DNG GMT +++   +    + 
Sbjct: 27 LFGAIAELIDNARDAGATELDIYTIKDSSVRGNFLLCFADNGCGMTPDDVKNVIIFGKSL 86

Query: 79 KISDDFSNIHTFG 91
          K  +D + I  +G
Sbjct: 87 KKCEDTAAIGMYG 99


>gi|256081169|ref|XP_002576845.1| Microrchidia 2a [Schistosoma mansoni]
 gi|238662131|emb|CAZ33082.1| putative Microrchidia 2a [Schistosoma mansoni]
          Length = 866

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 23 PSIAIKELIENSLDAESSRVET-VIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             AI ELI+N+ DA ++ ++   I      G       DNG GMT +++   +    + 
Sbjct: 27 LFGAIAELIDNARDAGATELDIYTIKDSSVRGNFLLCFADNGCGMTPDDVKNVIIFGKSL 86

Query: 79 KISDDFSNIHTFG 91
          K  +D + I  +G
Sbjct: 87 KKCEDTAAIGMYG 99


>gi|256081167|ref|XP_002576844.1| hypothetical protein [Schistosoma mansoni]
 gi|238662130|emb|CAZ33081.1| expressed protein [Schistosoma mansoni]
          Length = 906

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 23 PSIAIKELIENSLDAESSRVET-VIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             AI ELI+N+ DA ++ ++   I      G       DNG GMT +++   +    + 
Sbjct: 27 LFGAIAELIDNARDAGATELDIYTIKDSSVRGNFLLCFADNGCGMTPDDVKNVIIFGKSL 86

Query: 79 KISDDFSNIHTFG 91
          K  +D + I  +G
Sbjct: 87 KKCEDTAAIGMYG 99


>gi|71042167|pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form
 gi|71042172|pdb|1Z5C|A Chain A, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
 gi|71042173|pdb|1Z5C|B Chain B, Topoisomerase Vi-B, Adp Pi Bound Dimer Form
          Length = 469

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22 RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
           P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 26 NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 83

Query: 67 EIPMAVQR-HCTSK 79
          E+P A  R   +SK
Sbjct: 84 EVPNAFGRVLYSSK 97


>gi|71042168|pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form
 gi|71042169|pdb|1Z5A|B Chain B, Topoisomerase Vi-B, Adp-Bound Dimer Form
 gi|71042170|pdb|1Z5B|A Chain A, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
 gi|71042171|pdb|1Z5B|B Chain B, Topoisomerase Vi-B, Adp Alf4- Bound Dimer Form
 gi|114794402|pdb|2HKJ|A Chain A, Topoisomerase Vi-B Bound To Radicicol
          Length = 469

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22 RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
           P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 26 NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 83

Query: 67 EIPMAVQR-HCTSK 79
          E+P A  R   +SK
Sbjct: 84 EVPNAFGRVLYSSK 97


>gi|3024756|sp|O05207|TOP6B_SULSH RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|167745001|pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna
          Topoisomerase: Insights Into Dna Transfer Mechanisms
 gi|167745003|pdb|2ZBK|D Chain D, Crystal Structure Of An Intact Type Ii Dna
          Topoisomerase: Insights Into Dna Transfer Mechanisms
 gi|167745005|pdb|2ZBK|F Chain F, Crystal Structure Of An Intact Type Ii Dna
          Topoisomerase: Insights Into Dna Transfer Mechanisms
 gi|167745007|pdb|2ZBK|H Chain H, Crystal Structure Of An Intact Type Ii Dna
          Topoisomerase: Insights Into Dna Transfer Mechanisms
 gi|1926403|emb|CAA71604.1| type II DNA topoisomerase subunit B [Sulfolobus shibatae B12]
          Length = 530

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22 RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
           P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 27 NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84

Query: 67 EIPMAVQR-HCTSK 79
          E+P A  R   +SK
Sbjct: 85 EVPNAFGRVLYSSK 98


>gi|28373805|pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit
 gi|28373806|pdb|1MX0|B Chain B, Structure Of Topoisomerase Subunit
 gi|28373807|pdb|1MX0|C Chain C, Structure Of Topoisomerase Subunit
 gi|28373808|pdb|1MX0|D Chain D, Structure Of Topoisomerase Subunit
 gi|28373809|pdb|1MX0|E Chain E, Structure Of Topoisomerase Subunit
 gi|28373810|pdb|1MX0|F Chain F, Structure Of Topoisomerase Subunit
          Length = 472

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22  RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
            P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 29  NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 86

Query: 67  EIPMAVQR-HCTSK 79
           E+P A  R   +SK
Sbjct: 87  EVPNAFGRVLYSSK 100


>gi|28373795|pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit
          Length = 471

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22 RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
           P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 28 NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85

Query: 67 EIPMAVQR-HCTSK 79
          E+P A  R   +SK
Sbjct: 86 EVPNAFGRVLYSSK 99


>gi|308469097|ref|XP_003096788.1| hypothetical protein CRE_23689 [Caenorhabditis remanei]
 gi|308241479|gb|EFO85431.1| hypothetical protein CRE_23689 [Caenorhabditis remanei]
          Length = 409

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            P  A+ E ++NS DA +  V+  +     GKS  +I D+G GM  +E      RH T
Sbjct: 26 THPFTALTEFVDNSYDAGARHVDVSLTKYKPGKSRLEILDDGKGMDLDEA-----RHLT 79


>gi|256081171|ref|XP_002576846.1| hypothetical protein [Schistosoma mansoni]
 gi|238662132|emb|CAZ33083.1| expressed protein [Schistosoma mansoni]
          Length = 887

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 23 PSIAIKELIENSLDAESSRVET-VIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             AI ELI+N+ DA ++ ++   I      G       DNG GMT +++   +    + 
Sbjct: 27 LFGAIAELIDNARDAGATELDIYTIKDSSVRGNFLLCFADNGCGMTPDDVKNVIIFGKSL 86

Query: 79 KISDDFSNIHTFG 91
          K  +D + I  +G
Sbjct: 87 KKCEDTAAIGMYG 99


>gi|313887012|ref|ZP_07820712.1| conserved hypothetical protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923538|gb|EFR34347.1| conserved hypothetical protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 656

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 23/129 (17%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI----PMAVQRHCTSKIS 81
            + E++ NS DA++++V   I  G      I D+G GM+  +I         R       
Sbjct: 27  VLSEVVANSYDADATKVNISIYKGDDPVITILDDGKGMSLSDINDKYLKVGYR------K 80

Query: 82  DDF-SNIHT------FGFRGE---ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV 131
            D   ++ +       G +G    +L SI     + + ++    + G    I  +K+  V
Sbjct: 81  RDLGEHLSSHFKRPVMGRKGIGKLSLFSIAN--RIEVHTKRKDED-GEAFVIERDKLEQV 137

Query: 132 RPVAMNPGT 140
                +  +
Sbjct: 138 IRAGASTFS 146


>gi|328946816|gb|EGG40953.1| hypothetical protein HMPREF9397_0017 [Streptococcus sanguinis
           SK1087]
          Length = 266

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 25  IAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPM---AVQRHCTSK 79
            AI ELI N LDA ++ V+  I       S  +I DNG GM+ E++      + R+   +
Sbjct: 29  TAISELIANGLDAGATNVKLYIESIDKENSILEILDNGSGMSYEDLSTKYALIGRNR--R 86

Query: 80  ISDDFSNIHTFGFRGEALPSIGAVSHL------TLMSRPPQNNTGAQ 120
           IS++  +  T G +G     IG ++ L       ++S+     T   
Sbjct: 87  ISNEEFSEKTKGRKG-----IGKLATLFLSKKYYIVSKKGGTETAWM 128


>gi|229582219|ref|YP_002840618.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus Y.N.15.51]
 gi|259534001|sp|C3NHT6|TOP6B_SULIN RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|228012935|gb|ACP48696.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus Y.N.15.51]
          Length = 530

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 18/77 (23%)

Query: 22  RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
            P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 27  NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDEARQIYKVNVVDNGIGIPPQ 84

Query: 67  EIPMAVQR-HCTSKISD 82
           E+P A  R   +SK ++
Sbjct: 85  EVPNAFGRVLYSSKYAN 101


>gi|260221507|emb|CBA30140.1| hypothetical protein Csp_C22060 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 757

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 62/174 (35%), Gaps = 37/174 (21%)

Query: 26  AIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDD 83
           A+ EL++NS DA++  V   +          + D+G GM+++ I  A  +  T SK + D
Sbjct: 63  AVFELVKNSYDADARTVTVTLDLLAPVPKISVRDDGIGMSADTIENAWLQVGTDSKRNAD 122

Query: 84  FSNIHTFGFR---GEALPSIGAVSHL---------TLMSRPPQNNT-------------- 117
                  G R   GE       V  L          L++R                    
Sbjct: 123 ARRRSPLG-RFPLGE-----KGVGRLAVQKLGDTIRLVTRQQGQPEHSFKISWGALIDSA 176

Query: 118 ---GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
              G  + +   +  S        GT+VE+ DL  T  +R       ++ T+L 
Sbjct: 177 RYLGDGLEVQVAEHPSPEEFTSKSGTLVEITDLHHTDWSRREIRDLYRLVTSLC 230


>gi|123441987|ref|YP_001005970.1| putative prophage encoded two-component system histidine kinase
          [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088948|emb|CAL11758.1| putative prophage encoded two-component system histidine kinase
          [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 792

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          EL++N +DA +  ++   +   K    + DNG GM+  ++ 
Sbjct: 35 ELVKNGIDANAENIKVTFSE-KKKSIIVFDNGHGMSLSDLE 74


>gi|118576809|ref|YP_876552.1| signal transduction histidine kinase [Cenarchaeum symbiosum A]
 gi|118195330|gb|ABK78248.1| signal transduction histidine kinase [Cenarchaeum symbiosum A]
          Length = 718

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 29 ELIENSLDAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIP 69
          ELI+NS DA +  V         G +  +I+D+G GM++E+I 
Sbjct: 18 ELIKNSRDANAKNVLIKFKNLRYGSTEIEISDDGDGMSNEDIE 60


>gi|307354299|ref|YP_003895350.1| ATP-binding region ATPase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157532|gb|ADN36912.1| ATP-binding region ATPase domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 501

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 31  IENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           I+NS+ A++  ++      G KS   I DNG GMT  E+  +++    SK   D  +   
Sbjct: 38  IDNSIVADADDIQIQFTWLGEKSKISIIDNGCGMTEAELINSMKPG--SKNPLDERDPKD 95

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMN---------- 137
            G  G  L   S      +T+ S+   NN         + I+  +   +           
Sbjct: 96  LGRFGLGLKTASFSQCRRVTVGSKAEGNNI-VIRRWDLDYINQCKEWRLQRIDPKEDNIF 154

Query: 138 -------PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                   GTIV    +   +       +  +       D ++                 
Sbjct: 155 SALDSMGHGTIVLWEQMDRLVKGADKDDRKRENLFYKHIDKVKSHLSMVFHRFLEKQNSV 214

Query: 191 SNRYKMNFQSTNG 203
             +   +  S   
Sbjct: 215 KIQINNHPISPWD 227


>gi|302343991|ref|YP_003808520.1| ATP-binding region ATPase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301640604|gb|ADK85926.1| ATP-binding region ATPase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 662

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 18/185 (9%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           +  + E + N+ DA++  VE  I   GK F +I D+G GM+ E++     R    +  +D
Sbjct: 37  AAVLTEAVANAWDADAENVEIGIDPDGK-FIEIKDDGIGMSIEDMNTKYLRVGYRRRDED 95

Query: 84  FSNIHT-------FGFRG---EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
                T        G +G    +L SI     + + S     + G ++ I G   S    
Sbjct: 96  QETGRTTAKGRPVMGRKGLGKLSLFSIAN--TIEVHSAKNGESHGLRMTIDGIHKSVQDK 153

Query: 134 VAMNP-----GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
                        ++V +    +   +   +  +  T L   + RR ++      F    
Sbjct: 154 EPFYSPEKLPREEIQVTNGTAILLKDIKRQRLGRGATALRKRLARRFSVVGEAHGFKILI 213

Query: 189 IKSNR 193
                
Sbjct: 214 NGHPI 218


>gi|262197231|ref|YP_003268440.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262080578|gb|ACY16547.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 773

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 20 IERPSIAIKELIENSLDAESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          + R S A+ ELI+N+ DA+++ ++     +      + +I DNG GMT  +      R
Sbjct: 23 VGRDSTALIELIKNAYDADATNIKVVADKLDEPDSGYIEIIDNGLGMTRAQFERGFLR 80


>gi|330862097|emb|CBX72263.1| hypothetical protein YEW_EM19530 [Yersinia enterocolitica W22703]
          Length = 279

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 85/247 (34%), Gaps = 21/247 (8%)

Query: 333 TSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSED 392
           +S   +     S  ++  P  H+ +          +  +Q   ++    +       +  
Sbjct: 23  SSPERTVATERSIARERTPTYHVGEPYQKQQGELYRQLVQPAVVNKPAAVSQPSAASAPV 82

Query: 393 NDPVEESEA---THYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNS 449
              +   E     +Y  G         Y + +   G+ +++   A   L   ++     +
Sbjct: 83  ARQISTDEPLQGDNYSFGRVLTVFPSCYALIEYKQGIALLELTVAERWLKQAQLNPP--A 140

Query: 450 TKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNI 509
             +  Q LL P  + L + E      H + L  +GI+       A  +R +   L ++N+
Sbjct: 141 EGLRPQPLLIPLKLTLDKNEATACQRHQKLLVTMGIELAVEHARA-TLRAVSLPLRQQNL 199

Query: 510 PQLLRDIIDEIIDSSTTYTLQDRIENILAT-MACY-GSIRSGRKMQSIEMNRLLREMEKN 567
            +L+ +++  +              + LAT ++ + GS          +  +LL ++E+ 
Sbjct: 200 QKLIPELLGYLSQHEEISP------DALATWISRHLGS--EHEVWNVSQAIQLLTDVERL 251

Query: 568 PNSSQCN 574
                C 
Sbjct: 252 -----CP 253


>gi|309791890|ref|ZP_07686373.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6]
 gi|308226062|gb|EFO79807.1| DNA gyrase, B subunit [Oscillochloris trichoides DG6]
          Length = 636

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 76/256 (29%), Gaps = 34/256 (13%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM----- 70
           I      IKE+++NS+D   A  +  +   I   G    Q+TDNG G+  +  P      
Sbjct: 35  INGLHHMIKEVVDNSVDEALAGYADTITITIFADG--SVQVTDNGRGIPVDIHPKHQVSA 92

Query: 71  ----AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
               A + H   K  D    + + G  G  L  + A+S              A++    +
Sbjct: 93  LQLAATELHAGGKFGDGGYKVSS-GLHGVGLSVVNALS----------EWMRAEVRRHDK 141

Query: 127 KISSVRPVAMNPGTIVEVRDL------FFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                       G +V V +          +P    F      +  ++   +R MA    
Sbjct: 142 LWLQEYRTGKPQGPVVAVGEAEGTGTSIHFMPDVTIFKDGIDYQFRVVAQRLREMAYLTK 201

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
            + F F                G     +  +       + +    +     +     + 
Sbjct: 202 GLRFKF--EDQRTQNEVSFYFEGGIISYVRHLNKAKGALHRLPFYVERTVGEVAVEVAMQ 259

Query: 241 TFNRGNANQFYVFING 256
             +  + +  Y F N 
Sbjct: 260 YTDTYDTDSIYAFANN 275


>gi|47226532|emb|CAG08548.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 952

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 29 ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++NS DA ++R++          GG     + D+G GM   +    +Q   +SK S +
Sbjct: 12 ELVDNSRDANATRIDIYTEKRPELRGGYMLCFL-DDGIGMDPNDATHVIQFGKSSKRSPE 70

Query: 84 FSNIHTFG 91
           + I  +G
Sbjct: 71 STQIGQYG 78


>gi|330948608|gb|EGH48868.1| DNA mismatch repair protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 73

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
           +P A   GT VEVRDLFF  PAR  FLK+E+ E + + +VI+RMA+A   V+F       
Sbjct: 1   QPAAHPVGTSVEVRDLFFNTPARRKFLKAEKTEFDHLQEVIKRMALARFDVAFHLRHNGK 60

Query: 192 NRYKMN 197
               ++
Sbjct: 61  TVLSLH 66


>gi|116751270|ref|YP_847957.1| hypothetical protein Sfum_3853 [Syntrophobacter fumaroxidans MPOB]
 gi|116700334|gb|ABK19522.1| hypothetical protein Sfum_3853 [Syntrophobacter fumaroxidans MPOB]
          Length = 662

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 65/185 (35%), Gaps = 18/185 (9%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           +  + E + N+ DA++  VE  I   GK F +I D+G GM+ E++     R    +  +D
Sbjct: 37  AAVLTEAVANAWDADAENVEIGIDPDGK-FIEIKDDGIGMSIEDMNTKYLRVGYRRRDED 95

Query: 84  FSNIHT-------FGFRG---EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
                T        G +G    +L SI     + + S     + G ++ I G   S    
Sbjct: 96  QETGRTTAKGRPVMGRKGLGKLSLFSIAN--TIEVHSAKNGESHGLRMTIDGIHKSVQDK 153

Query: 134 VAMNP-----GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
                        ++V +    +   +   +  +  T L   + RR ++      F    
Sbjct: 154 EPFYSPEKLPREEIQVTNGTAILLKDIKRQRLGRGATALRKRLARRFSVVGEAHGFKILI 213

Query: 189 IKSNR 193
                
Sbjct: 214 DGHPI 218


>gi|223983415|ref|ZP_03633601.1| hypothetical protein HOLDEFILI_00881 [Holdemania filiformis DSM
           12042]
 gi|223964587|gb|EEF68913.1| hypothetical protein HOLDEFILI_00881 [Holdemania filiformis DSM
           12042]
          Length = 345

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 30  LIENSLD---AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           L++N+LD   A   R+              + DNG G+  E++    +R   S+ S D  
Sbjct: 245 LLKNALDHTQAG-DRITVQWKSRAPLVQLVVQDNGCGIHPEDLHHIFKRFYRSRFSKDTQ 303

Query: 86  NIHTFG 91
            I   G
Sbjct: 304 GIG-LG 308


>gi|291279836|ref|YP_003496671.1| hypothetical protein DEFDS_1455 [Deferribacter desulfuricans SSM1]
 gi|290754538|dbj|BAI80915.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 460

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
           E+    +  LI NSLDA + ++E  I    +     I DNG G+  E          T+K
Sbjct: 357 EKLLQVLLNLINNSLDAGADKIEINIFNISEDVIIDIIDNGTGINEEAKDKIFMPFFTTK 416


>gi|163848553|ref|YP_001636597.1| DNA gyrase subunit B [Chloroflexus aurantiacus J-10-fl]
 gi|222526487|ref|YP_002570958.1| DNA gyrase subunit B [Chloroflexus sp. Y-400-fl]
 gi|163669842|gb|ABY36208.1| DNA gyrase, B subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222450366|gb|ACM54632.1| DNA gyrase, B subunit [Chloroflexus sp. Y-400-fl]
          Length = 636

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 81/261 (31%), Gaps = 45/261 (17%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE---- 67
           I      ++E+++NS+D   A  ++ V   I   G     ++D+G G+      +E    
Sbjct: 36  INGLHTMVREVVDNSVDEVMAGRATSVSVTIHRDG--SVTVSDDGSGIPVGIHPKEGIST 93

Query: 68  IPMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           + + + R H   K       + + G  G  + ++ A+S                  +  +
Sbjct: 94  LTLVMTRLHAGGKFGSGGYKVSS-GLHGVGVSAVNALS----------------AYMRVD 136

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQ-----------VETNLITDVIRRM 175
              + R         V V D+    P   +   +                + +    R M
Sbjct: 137 VYRNGRHYYQEYRAGVPVTDVIDLEPTDRHGTTTRFLPDTSIIQTLDYNFDTLAQRFREM 196

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           +     + F F   +    ++NF    G     +  +  E  + +      +     +  
Sbjct: 197 SYLNKGLRFKF-VDERTNRELNFYFEGG-IVSYVRHLNKEKTVLHRQPFYVERIVDDVMV 254

Query: 236 YTGIPTFNRGNANQFYVFING 256
              +   +  + +  Y F N 
Sbjct: 255 EVALQYTDSFDTDNVYTFANN 275


>gi|257470288|ref|ZP_05634379.1| histidine kinase [Fusobacterium ulcerans ATCC 49185]
 gi|317064499|ref|ZP_07928984.1| signal transduction histidine kinase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690175|gb|EFS27010.1| signal transduction histidine kinase [Fusobacterium ulcerans ATCC
           49185]
          Length = 718

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 26/172 (15%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC--TSKISD 82
            AI EL++NS DA +S ++ +          + DNG GM  ++I      H   +SK ++
Sbjct: 27  SAILELVKNSFDAGASELKIIFKE---DQLILEDNGKGMNEDDIRNKWM-HVGKSSKENE 82

Query: 83  ----DF---SNIHTFGFRG---EALPSIGAVSHLTLMS-RPPQNNTGAQIAISGEKISSV 131
               D      I++ G +G    AL  +G    + L+S +        +   +    ++ 
Sbjct: 83  YSFYDIEGNERIYS-GSKGIGRFALARLGK--RVKLISNKLKDYKVIWETDWNNINFNTE 139

Query: 132 RPVAMNPGTIVEVRDLFFTIPA------RLNFLKSEQVETNLITDVIRRMAI 177
             +  +  T + + +L            +    ++ +     I    R    
Sbjct: 140 DIITKDSKTKIIISELRDRWNEGSIENLKKYLSRTTRNSKMKIYIEFREKVY 191


>gi|289805763|ref|ZP_06536392.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 226

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 72/225 (32%), Gaps = 30/225 (13%)

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMIS------- 343
           DP QVDVNVHPAK  +RF    ++ +FI Q +   + ++  +T  +              
Sbjct: 1   DPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQTETTLPLEEIAPAPRHVPENR 60

Query: 344 ----------SFHQDNAPKTHLPKYATSLTN-----------TQEKLFLQENRLSTNDLL 382
                           A +   P+Y+   +               +   Q+ +      L
Sbjct: 61  IAAGRNHFAVPAEPTAAREPATPRYSDGASGGNGGRQSAGGWPHAQPGYQKQQGEVYRTL 120

Query: 383 PSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEK 442
                T           +      G     +  +  + +    + ++    A   L   +
Sbjct: 121 LQTPTTSPAPEPVAPALDGHSQSFGRVLTIVGGDCALLEHAGTIQLLSLPVAERWLRQAQ 180

Query: 443 MRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKA 487
           +      + + +Q LL P  + +   E A + +    L  LGI+ 
Sbjct: 181 L--TPGQSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEF 223


>gi|110834689|ref|YP_693548.1| hypothetical protein ABO_1828 [Alcanivorax borkumensis SK2]
 gi|110647800|emb|CAL17276.1| hypothetical protein ABO_1828 [Alcanivorax borkumensis SK2]
          Length = 581

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 22 RPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
           P  A+KEL++N+ DAE+ RV   +          + D+G GMT  E+ 
Sbjct: 22 SPEKALKELVDNAWDAEALRVSITLPEPMSGDAIIVEDDGAGMTLNELQ 70


>gi|315442524|ref|YP_004075403.1| DNA mismatch repair enzyme ( ATPase) [Mycobacterium sp. Spyr1]
 gi|315260827|gb|ADT97568.1| DNA mismatch repair enzyme (predicted ATPase) [Mycobacterium sp.
           Spyr1]
          Length = 504

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 2   KIRKLSEK--IINQIAAGEIIERPSIAIKELIENSLDAESSRVET--VIAGGGKSFFQIT 57
           +I  L     ++  + A         A+ +L++NS+DA+++RV     I     +   I 
Sbjct: 13  RI-VLPPDPGLVKSLGAH---HSLPTAVADLVDNSVDAKATRVLIVFEIENQSATGLTIV 68

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRP-P 113
           DNG GM  ++   A++     K  DD       G  G  L +  A SH   LT+ +RP  
Sbjct: 69  DNGRGMNEKQADNAMRLGRQRKYEDDAQ-----GHFGIGLKA-AAFSHADTLTVYTRPGS 122

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPG 139
            +  G ++     +      +     
Sbjct: 123 GSFHGRRLRKKDVQRDYSCEILHPEA 148


>gi|270158284|ref|ZP_06186941.1| hypothetical protein LLB_1758 [Legionella longbeachae D-4968]
 gi|289163461|ref|YP_003453599.1| hypothetical protein LLO_0118 [Legionella longbeachae NSW150]
 gi|269990309|gb|EEZ96563.1| hypothetical protein LLB_1758 [Legionella longbeachae D-4968]
 gi|288856634|emb|CBJ10445.1| hypothetical protein LLO_0118 [Legionella longbeachae NSW150]
          Length = 240

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 40/208 (19%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE-------E 67
           AA  ++      + EL++N+LDA+++ +       G +  ++ D+G G + E        
Sbjct: 46  AAHHVV--LVS-LSELLKNALDADANTLFIEDESSGNASIRVFDDGSGFSPEFLGKDTTH 102

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALP-----------SIGAVSHLTLMSRPPQNN 116
           +  AV+    S I  +       G  G  L            SI       + S     N
Sbjct: 103 LDYAVKLAGQSAIISEKIGRSKLGGHGRGLAQAHEVIKNYEGSI-------ICSNRSDGN 155

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
            GA I  +            +  T V   D++ +  A L    S     +   +  + + 
Sbjct: 156 HGAHIRFN------------SSITPVLAADIYQSFNAALLAFSSHYCRFDSAEEAEKVVG 203

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGN 204
                  F  +  + N+      +   +
Sbjct: 204 SILDNFRFFATERRKNKNTTPLMAQEQD 231


>gi|92114662|ref|YP_574590.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM
           3043]
 gi|91797752|gb|ABE59891.1| DNA topoisomerase IV subunit B [Chromohalobacter salexigens DSM
           3043]
          Length = 626

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 23/199 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE--------EI 68
           RP+   +E+I+NS+D   A  +S +   +   GG    +++D+G GM  +         +
Sbjct: 30  RPNHLAQEVIDNSVDEALAGHASHIRVRLHDDGG---IEVSDDGRGMPIDMHPEHGVSGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S       + G  G  +  + A+S  L +      +  G   A   +
Sbjct: 87  ELILTRLHAGGKFSQSSYR-FSGGLHGVGVSVVNALSRRLEIEVCRDGDRHGMAFAHGDK 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
                     +      V   +       ++  S ++    +  ++R  A+  P +  T 
Sbjct: 146 VEDLTVIGTCSKKAKGTVVRFW----PDESYFDSPRLALPRLKHLLRAKAVLCPGLEVTL 201

Query: 187 STIKSNRYKMNFQSTNGNF 205
                      +     ++
Sbjct: 202 IEADGTESVWQYADGLRDY 220


>gi|193222341|emb|CAL62000.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 499

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 22 RPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMA 71
              A+ ++I+NS+ AE+S ++   +  G KSF ++ DNG GM   EI +A
Sbjct: 23 SLPSALADIIDNSIAAEASEIDVTFVWNGAKSFIRVHDNGTGMDEAEIDLA 73


>gi|333024769|ref|ZP_08452833.1| hypothetical protein STTU_2273 [Streptomyces sp. Tu6071]
 gi|332744621|gb|EGJ75062.1| hypothetical protein STTU_2273 [Streptomyces sp. Tu6071]
          Length = 516

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 30 LIENSLDAESSRVETVIAGGG--KSFFQITDNGFGMTSEEIPMA 71
          L++NS+DA +  V       G   +   + D+G GMT +E+ +A
Sbjct: 48 LVDNSIDAGAHDVVIHFLRDGDRLTSLLVVDDGKGMTEKELDIA 91


>gi|318076179|ref|ZP_07983511.1| hypothetical protein SSA3_05538 [Streptomyces sp. SA3_actF]
          Length = 516

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 30 LIENSLDAESSRVETVIAGGG--KSFFQITDNGFGMTSEEIPMA 71
          L++NS+DA +  V       G   +   + D+G GMT +E+ +A
Sbjct: 48 LVDNSIDAGAHDVVIHFLRDGDRLTSLLVVDDGKGMTEKELDIA 91


>gi|318057147|ref|ZP_07975870.1| hypothetical protein SSA3_04365 [Streptomyces sp. SA3_actG]
          Length = 511

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 30 LIENSLDAESSRVETVIAGGG--KSFFQITDNGFGMTSEEIPMA 71
          L++NS+DA +  V       G   +   + D+G GMT +E+ +A
Sbjct: 43 LVDNSIDAGAHDVVIHFLRDGDRLTSLLVVDDGKGMTEKELDIA 86


>gi|320101389|ref|YP_004176981.1| DNA topoisomerase VI subunit B [Desulfurococcus mucosus DSM 2162]
 gi|319753741|gb|ADV65499.1| DNA topoisomerase VI, B subunit [Desulfurococcus mucosus DSM
          2162]
          Length = 529

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 22 RPSIA----IKELIENSLDA-ESSRV----ETVIAG----GGKSFFQITDNGFGMTSEEI 68
           P+ A    ++EL+EN+LDA ++  +    +  I             + DNG G+  + +
Sbjct: 28 SPARAIYQTVRELVENALDATDAHGILPDVKISIKRVDEIQEFYRITVEDNGIGIPPDVV 87

Query: 69 PMAVQR 74
          P A  R
Sbjct: 88 PDAFGR 93


>gi|311695220|gb|ADP98093.1| two-component sensor [marine bacterium HP15]
          Length = 412

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NSL+A +  V   +    G+   ++ DNG G    +     +   T+K
Sbjct: 317 LVNNSLEAGARHVAVRVTEETGELVIRVVDNGPGFEPSDAARLTEAFYTTK 367


>gi|219850524|ref|YP_002464957.1| DNA gyrase subunit B [Chloroflexus aggregans DSM 9485]
 gi|219544783|gb|ACL26521.1| DNA gyrase, B subunit [Chloroflexus aggregans DSM 9485]
          Length = 636

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 81/261 (31%), Gaps = 45/261 (17%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE---- 67
           I      ++E+++NS+D   A  ++ V   I   G     ++D+G G+      +E    
Sbjct: 36  INGLHTMVREVVDNSVDEVMAGRATSVSVTIHRDG--SVTVSDDGSGIPVGIHPKEGIST 93

Query: 68  IPMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           + + + R H   K       + + G  G  + ++ A+S                  +  +
Sbjct: 94  LTLVMTRLHAGGKFGSGGYKVSS-GLHGVGVSAVNALS----------------SYMRVD 136

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQ-----------VETNLITDVIRRM 175
              + R         V V D+    P   +   +                + +    R M
Sbjct: 137 VYRNGRHYYQEYRAGVPVTDVIDLEPTDRHGTTTRFLPDTSIIQTLDYNFDTLAQRFREM 196

Query: 176 AIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           +     + F F   +    ++NF    G     +  +  +  + +      +     +  
Sbjct: 197 SYLNKGLRFKF-VDERTNRELNFYFEGG-IVSYVRHLNKDKVVLHRQPFYVERVVDEVMV 254

Query: 236 YTGIPTFNRGNANQFYVFING 256
              +   +  + +  Y F N 
Sbjct: 255 EVALQYTDTFDTDNVYTFANN 275


>gi|227827528|ref|YP_002829308.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus M.14.25]
 gi|227830215|ref|YP_002831995.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus L.S.2.15]
 gi|229579030|ref|YP_002837428.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus Y.G.57.14]
 gi|229584731|ref|YP_002843233.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus M.16.27]
 gi|238619685|ref|YP_002914511.1| DNA topoisomerase VI subunit B [Sulfolobus islandicus M.16.4]
 gi|284997638|ref|YP_003419405.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus L.D.8.5]
 gi|259533989|sp|C3N5B3|TOP6B_SULIA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|259533992|sp|C4KGX9|TOP6B_SULIK RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|259533995|sp|C3MPN7|TOP6B_SULIL RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|259533998|sp|C3MYN1|TOP6B_SULIM RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|259534004|sp|C3NDW7|TOP6B_SULIY RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|227456663|gb|ACP35350.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus L.S.2.15]
 gi|227459324|gb|ACP38010.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus M.14.25]
 gi|228009744|gb|ACP45506.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus Y.G.57.14]
 gi|228019781|gb|ACP55188.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus M.16.27]
 gi|238380755|gb|ACR41843.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus M.16.4]
 gi|284445533|gb|ADB87035.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus L.D.8.5]
 gi|323474579|gb|ADX85185.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus REY15A]
 gi|323477311|gb|ADX82549.1| DNA topoisomerase VI, B subunit [Sulfolobus islandicus HVE10/4]
          Length = 530

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 18/74 (24%)

Query: 22 RPSIA----IKELIENSLDAESS---------RVETVIAGGGKS--FFQITDNGFGMTSE 66
           P+ A    ++ELIENSLDA  +         ++   +    +      + DNG G+  +
Sbjct: 27 NPARALYQTVRELIENSLDA--TDVHGILPNIKITIDLIDEARQIYKVNVVDNGIGIPPQ 84

Query: 67 EIPMAVQR-HCTSK 79
          E+P A  R   +SK
Sbjct: 85 EVPNAFGRVLYSSK 98


>gi|326385589|ref|ZP_08207223.1| putative C4-dicarboxylate transport two-component sensor histidine
           kinase transcriptional regulatory protein
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209923|gb|EGD60706.1| putative C4-dicarboxylate transport two-component sensor histidine
           kinase transcriptional regulatory protein
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 590

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 22  RPSIAIKELIENSLDAESSR----VE-TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N++DA SSR    +E      GG+   +I DNG G++ E          
Sbjct: 487 RLEQVLVNLLHNAIDALSSRPDARIELVATQEGGRVRLRIRDNGPGISPEIAGRLFTPFA 546

Query: 77  TS 78
           TS
Sbjct: 547 TS 548


>gi|254453821|ref|ZP_05067258.1| ATPase [Octadecabacter antarcticus 238]
 gi|198268227|gb|EDY92497.1| ATPase [Octadecabacter antarcticus 238]
          Length = 502

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 20/115 (17%)

Query: 16  AGEIIERP-------SIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEE 67
           AG +IE         + A+ ++I+N++ A +++V  +     G S+  + DNG GM+ +E
Sbjct: 13  AGMLIESLRGLGYTTATALADIIDNAIPAGATQVNVLFHWAEGDSWISVADNGKGMSDDE 72

Query: 68  IPMAVQRHCTS----KISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNN 116
           +  A+Q         ++SDD       G  G  L   S      LT+ SRP ++ 
Sbjct: 73  LERAMQLGARDPRDERLSDDL------GRFGMGLKTASFSQARTLTVASRPAKSE 121


>gi|262195363|ref|YP_003266572.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078710|gb|ACY14679.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 647

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 38/209 (18%)

Query: 29  ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR---------H 75
           E+++NS+D      ++RV+  +   G +   I DNG G+  + +P   +          H
Sbjct: 42  EIVDNSIDEVINKHATRVDVTLHDDG-TRVTIEDNGRGIPIDTLPKYKKPALEIIMTTLH 100

Query: 76  CTSKISDDFSNIHTFGFRG------EALPS--IGAVSHLTLMSRPPQNNTGAQIAIS--G 125
              K     +  H+ G  G       AL S  I  V            +   Q       
Sbjct: 101 AGGKFERGKNYKHSGGLHGVGASVVNALSSELIAEVKR--------DGDLYQQTYERGVP 152

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                    +   GTI+         P    F K ++ +   I + +   +  +  V   
Sbjct: 153 TGKMKKAGSSRGSGTIITF------TPDPQIFGKKQRFDAKHIAERLEAKSYLHRGVKLV 206

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIG 214
                S     +    +    E +S+++G
Sbjct: 207 LHDKLSKPNATHTYQHDQGIAEYLSKLLG 235


>gi|220906995|ref|YP_002482306.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863606|gb|ACL43945.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 684

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 24/114 (21%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSE---EIPM 70
           ++I  P   I EL++NS DA+++     +      GG     ++DNG GM      +  +
Sbjct: 16  QLIPNPDQGIMELVKNSYDADATECTVKLINTEAIGG--SLVVSDNGIGMDLNAISDGWL 73

Query: 71  AVQRHCTSK----ISDDFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQNN 116
            + R   SK    +      +       G     L ++   SH+TL +RP  + 
Sbjct: 74  VIGR---SKKAARLPTALGRLPVGDKGLGR----LAALRQGSHVTLKTRPADDP 120


>gi|253571496|ref|ZP_04848902.1| ATPase [Bacteroides sp. 1_1_6]
 gi|251838704|gb|EES66789.1| ATPase [Bacteroides sp. 1_1_6]
          Length = 438

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 31  IENSLDAESSRVET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++NS+ A ++ +    I  GG+S   I D+G GM  +E+  A++    + + +   +   
Sbjct: 39  LDNSISAGANNIWISRIWKGGQSIITIKDDGIGMNHQELIEAMRPGSQNPLEE--RSKSD 96

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
            G  G  L   S      LT+ S+              + ++      +   
Sbjct: 97  LGRFGLGLKTASFSQCRRLTVYSKKADYKPVY-WTWDLDYVAKTNQWELLQW 147


>gi|163753410|ref|ZP_02160534.1| sensor histidine kinase [Kordia algicida OT-1]
 gi|161327142|gb|EDP98467.1| sensor histidine kinase [Kordia algicida OT-1]
          Length = 390

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +++N++DA     +  VE  I        QITDNG G+         Q   TSK
Sbjct: 294 MVKNAIDAMKGKGALHVEI-IPADSFVRIQITDNGKGIPKRNFKKVFQPGFTSK 346


>gi|22124664|ref|NP_668087.1| hypothetical protein y0751 [Yersinia pestis KIM 10]
 gi|21957474|gb|AAM84338.1|AE013677_3 hypothetical [Yersinia pestis KIM 10]
          Length = 373

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 17 GEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPM 70
          G++   P +A+ EL+ N+ DA +SRV+ V+    GG     +TD+G GMT E+   
Sbjct: 25 GQVAHVPQVALTELVANAWDAGASRVDLVLPTDIGGI--LTVTDDGHGMTPEQFKK 78


>gi|108808928|ref|YP_652844.1| hypothetical protein YPA_2937 [Yersinia pestis Antiqua]
 gi|108810818|ref|YP_646585.1| hypothetical protein YPN_0653 [Yersinia pestis Nepal516]
 gi|145600500|ref|YP_001164576.1| hypothetical protein YPDSF_3246 [Yersinia pestis Pestoides F]
 gi|165925703|ref|ZP_02221535.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165936625|ref|ZP_02225192.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166010048|ref|ZP_02230946.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua
          str. E1979001]
 gi|166214316|ref|ZP_02240351.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua
          str. B42003004]
 gi|167399081|ref|ZP_02304605.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua
          str. UG05-0454]
 gi|167420721|ref|ZP_02312474.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167423130|ref|ZP_02314883.1| conserved hypothetical protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|167470106|ref|ZP_02334810.1| hypothetical protein YpesF_20003 [Yersinia pestis FV-1]
 gi|229839080|ref|ZP_04459239.1| hypothetical protein YPH_1355 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229896568|ref|ZP_04511735.1| hypothetical protein YPS_4400 [Yersinia pestis Pestoides A]
 gi|229899643|ref|ZP_04514784.1| hypothetical protein YPF_4134 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229901021|ref|ZP_04516145.1| hypothetical protein YP516_0691 [Yersinia pestis Nepal516]
 gi|270489200|ref|ZP_06206274.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294505140|ref|YP_003569202.1| hypothetical protein YPZ3_3031 [Yersinia pestis Z176003]
 gi|108774466|gb|ABG16985.1| hypothetical protein YPN_0653 [Yersinia pestis Nepal516]
 gi|108780841|gb|ABG14899.1| hypothetical protein YPA_2937 [Yersinia pestis Antiqua]
 gi|145212196|gb|ABP41603.1| hypothetical protein YPDSF_3246 [Yersinia pestis Pestoides F]
 gi|165915274|gb|EDR33884.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165922315|gb|EDR39492.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165990955|gb|EDR43256.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua
          str. E1979001]
 gi|166204548|gb|EDR49028.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua
          str. B42003004]
 gi|166961527|gb|EDR57548.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167051585|gb|EDR62993.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua
          str. UG05-0454]
 gi|167057300|gb|EDR67046.1| conserved hypothetical protein [Yersinia pestis biovar
          Mediaevalis str. K1973002]
 gi|229682360|gb|EEO78452.1| hypothetical protein YP516_0691 [Yersinia pestis Nepal516]
 gi|229687135|gb|EEO79210.1| hypothetical protein YPF_4134 [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229695446|gb|EEO85493.1| hypothetical protein YPH_1355 [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229700346|gb|EEO88378.1| hypothetical protein YPS_4400 [Yersinia pestis Pestoides A]
 gi|262363201|gb|ACY59922.1| hypothetical protein YPD4_3018 [Yersinia pestis D106004]
 gi|262367133|gb|ACY63690.1| hypothetical protein YPD8_3018 [Yersinia pestis D182038]
 gi|270337704|gb|EFA48481.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294355599|gb|ADE65940.1| hypothetical protein YPZ3_3031 [Yersinia pestis Z176003]
 gi|320016641|gb|ADW00213.1| hypothetical protein YPC_3772 [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 369

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 17 GEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPM 70
          G++   P +A+ EL+ N+ DA +SRV+ V+    GG     +TD+G GMT E+   
Sbjct: 21 GQVAHVPQVALTELVANAWDAGASRVDLVLPTDIGGI--LTVTDDGHGMTPEQFKK 74


>gi|302818176|ref|XP_002990762.1| hypothetical protein SELMODRAFT_429149 [Selaginella moellendorffii]
 gi|300141500|gb|EFJ08211.1| hypothetical protein SELMODRAFT_429149 [Selaginella moellendorffii]
          Length = 560

 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQIT--------DNGFGMTSEEIPMAVQR 74
              A+ ELI+N+ DA + R+E  I  G     +++        D+G GMT ++I   V  
Sbjct: 168 LFGAVAELIDNACDAGAKRLEISIQMGTLKSPEVSEVPMLCFLDDGLGMTHKDIVKMVSF 227

Query: 75  HCTSKISDDFSNIHTFG 91
                  DD   I  FG
Sbjct: 228 GHKKPEQDDPEQIGRFG 244


>gi|145592125|ref|YP_001154127.1| DNA topoisomerase VI subunit B [Pyrobaculum arsenaticum DSM
          13514]
 gi|145283893|gb|ABP51475.1| DNA topoisomerase VI, B subunit [Pyrobaculum arsenaticum DSM
          13514]
          Length = 528

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 27 IKELIENSLDAESS-----RV--ETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR-HC 76
          I+EL+ENSLDA  +      +     +    KS+  +   DNG G+   EIP    R   
Sbjct: 33 IRELVENSLDATETYGILPTIYLRVAVEDEQKSWVSVYAEDNGIGIPGNEIPNVFGRVFY 92

Query: 77 TSKIS 81
          +SK  
Sbjct: 93 SSKYR 97


>gi|308479438|ref|XP_003101928.1| hypothetical protein CRE_08380 [Caenorhabditis remanei]
 gi|308262551|gb|EFP06504.1| hypothetical protein CRE_08380 [Caenorhabditis remanei]
          Length = 922

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 21 ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            P  AI EL++N+ DA++  +E   +      + +  D+G GM+ EE+   +    ++K
Sbjct: 24 TSPFSAIAELVDNAYDADADTLEINLVRDYNDYYLEFKDDGTGMSQEEVSKMILFGHSNK 83

Query: 80 ISDDFSNIHTFG 91
           SD    I  +G
Sbjct: 84 TSD---KIGRYG 92


>gi|317505387|ref|ZP_07963312.1| ATPase [Prevotella salivae DSM 15606]
 gi|315663494|gb|EFV03236.1| ATPase [Prevotella salivae DSM 15606]
          Length = 490

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 31  IENSLDAESSRVET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++NS+ A ++ +    I  GG+S   I D+G GM  +E+  A++    + + +   +   
Sbjct: 39  LDNSISAGANNIWISRIWKGGQSIITIKDDGIGMNHQELIEAMRPGSQNPLEE--RSKSD 96

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
            G  G  L   S      LT+ S+              + ++      +   
Sbjct: 97  LGRFGLGLKTASFSQCRRLTVYSKKADYKPVY-WTWDLDYVAKTNQWELLQW 147


>gi|325527612|gb|EGD04917.1| histidine kinase [Burkholderia sp. TJI49]
          Length = 665

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  ++  +A  G +   ++ DNG G+  E +P   +   
Sbjct: 545 RLEQVLINLLGNALDAVAGVAAPAIDVTVAVSGATLGIEVRDNGPGIAPELLPRLFEPFF 604

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 605 TTK---------EMG-RGLGLGLAISSSIAS 625


>gi|289167264|ref|YP_003445531.1| molecular chaperone, HSP90 family [Streptococcus mitis B6]
 gi|288906829|emb|CBJ21663.1| molecular chaperone, HSP90 family [Streptococcus mitis B6]
          Length = 688

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 25 IAIKELIENSLDAESSRVETVIAG-GGKSFF-QITDNGFGMTSEEI 68
           AI EL+ N LDA ++ V+  I     K    +I DNG GM+  ++
Sbjct: 29 SAISELVANGLDAGATNVKLYINSINKKKSILEIIDNGSGMSYNDL 74


>gi|300777914|ref|ZP_07087772.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300503424|gb|EFK34564.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 688

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 28 KELIENSLDAESSRVETVIA-------GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          KELI NS+ A S  +   I          G     I D+G G+   E    V +  T
Sbjct: 37 KELINNSIQAGSKNIFITINYTNSLTVKSGIEKIVIEDDGHGVPYSEFKKKVLQIAT 93


>gi|239616434|ref|YP_002939756.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505265|gb|ACR78752.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 180

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 32 ENSLDAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          +N++DA +S+++  I    G +  F + DNG G+  E++   +    T K
Sbjct: 13 QNAVDAGASQIKLSIEEIPGERFSFVVEDNGKGIPEEKLKEILDPFYTEK 62


>gi|297582880|ref|YP_003698660.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141337|gb|ADH98094.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 693

 Score = 54.7 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 31  IENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N++DA + +    +   +   G+     + DNG G+  E++        TSK
Sbjct: 586 IQNAIDAMAGKTAPALSIRLYQEGQDLLVDVADNGSGIRPEDLDKLFDPFFTSK 639


>gi|238923342|ref|YP_002936857.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
 gi|238875016|gb|ACR74723.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
          Length = 464

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L +N+  A ++R+E  I G G     + DNG G++ E++    +
Sbjct: 369 LCDNAKKAGATRIEVNITGSG---ISVKDNGRGISKEDMKHIFE 409


>gi|229073310|ref|ZP_04206460.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Bacillus cereus F65185]
 gi|228709817|gb|EEL61841.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Bacillus cereus F65185]
          Length = 819

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 26  AIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           A+ ELI+NS DA++      I        G     + DNG GM    I  A  R  TS  
Sbjct: 27  ALLELIKNSSDADALNCNIEIDTHYKSPYGLGRIVLEDNGNGMNPYIIENAFLRIATS-F 85

Query: 81  SDDFSNIHTFGFRGEALPS 99
              +  +    F+ EAL S
Sbjct: 86  KTKYQKVSPI-FKREALGS 103


>gi|163782177|ref|ZP_02177176.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882709|gb|EDP76214.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 594

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 24  SIAIKE----LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           +  +KE    LI NS++  +  V   I   G  +    D+G G+  EE       + +S
Sbjct: 497 ASLLKEVFYNLINNSIEWGARNVRIRIGEDGLEYV---DDGKGIPPEEAENIFMPYFSS 552


>gi|322372405|ref|ZP_08046941.1| hypothetical protein HMPREF0848_00111 [Streptococcus sp. C150]
 gi|321277447|gb|EFX54516.1| hypothetical protein HMPREF0848_00111 [Streptococcus sp. C150]
          Length = 688

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 25 IAIKELIENSLDAESSRVETVIAG-GGKSFF-QITDNGFGMTSEEIP 69
           AI EL+ N LDA ++ V+  I     K    +I DNG GM+  ++ 
Sbjct: 29 SAISELVANGLDAGATNVKLYINSINKKKSILEIIDNGSGMSYNDLA 75


>gi|229547358|ref|ZP_04436083.1| possible ATP-binding protein [Enterococcus faecalis TX1322]
 gi|256854884|ref|ZP_05560248.1| predicted protein [Enterococcus faecalis T8]
 gi|307292236|ref|ZP_07572100.1| hypothetical protein HMPREF9509_02528 [Enterococcus faecalis
           TX0411]
 gi|229307507|gb|EEN73494.1| possible ATP-binding protein [Enterococcus faecalis TX1322]
 gi|256710444|gb|EEU25488.1| predicted protein [Enterococcus faecalis T8]
 gi|306496742|gb|EFM66295.1| hypothetical protein HMPREF9509_02528 [Enterococcus faecalis
           TX0411]
 gi|315028685|gb|EFT40617.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
          Length = 483

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTF 90
           ++NS+ A ++R++       + +  I DNG+GM+  E+  A++    S+   D       
Sbjct: 33  VDNSVSANATRIDINF-NNQQKYVSILDNGYGMSKIELLQAMK--YGSRSIYDLRTQDDL 89

Query: 91  GFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS 130
           G  G  L   S      LT++S      +GA   +   K  +
Sbjct: 90  GRFGLGLKMASFSQCRKLTVVSIKDGEYSGAVWDLDVVKKKN 131


>gi|330878698|gb|EGH12847.1| hypothetical protein PSYMP_22493 [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 673

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          P+  + E++ N+ DA+++ V+  I         + D+G GM   E+     R
Sbjct: 34 PA-VVTEIVANAWDADANLVDVDIQD---DKIVVQDDGHGMGPGELQARFLR 81


>gi|301385610|ref|ZP_07234028.1| hypothetical protein PsyrptM_23367 [Pseudomonas syringae pv.
          tomato Max13]
 gi|302061460|ref|ZP_07253001.1| hypothetical protein PsyrptK_15855 [Pseudomonas syringae pv.
          tomato K40]
          Length = 673

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          P+  + E++ N+ DA+++ V+  I         + D+G GM   E+     R
Sbjct: 34 PA-VVTEIVANAWDADANLVDVDIQD---DKIVVQDDGHGMGPGELQARFLR 81


>gi|253996177|ref|YP_003048241.1| DNA topoisomerase IV subunit B [Methylotenera mobilis JLW8]
 gi|253982856|gb|ACT47714.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera mobilis JLW8]
          Length = 661

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 36/238 (15%)

Query: 21  ERPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
           + P+  ++E+I+N+ D A    ++ +E  +   G    ++TDNG G+  E         +
Sbjct: 31  DSPTHIVQEVIDNAADEALGGHATNIEVTVYKDGA--VEVTDNGRGIPVEIPKGETQPAV 88

Query: 69  PMAV-QRHCTSKISDDFSNIHTFGFRG----------EALPSIGAVSHLTLMSRPPQNNT 117
            +   Q H   K   +  N  ++ F G           AL +      L +  +      
Sbjct: 89  ELVFVQLHAGGKFDKEDEN-SSYRFSGGLHGVGVSVTNALST-----RLEVKVKRGGKVH 142

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
           G                             +        +  S +V    +  +I+  A+
Sbjct: 143 GLIFENGHCVEPLAEVGKCLKRDTGTTVKCW----PDPKYFDSPKVSIQQLEHLIKSKAV 198

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIG-EDFINNAVELNEKSNEITLQ 234
               VS + S   ++ ++    +     P+ + ++IG  +  ++ V +   + E   Q
Sbjct: 199 LLRGVSVSLSIEGTDGFEERTWTYADGLPQYLDELIGEREIADDEVPVPIIAGEFYHQ 256


>gi|149916959|ref|ZP_01905460.1| HSP90 [Plesiocystis pacifica SIR-1]
 gi|149822237|gb|EDM81628.1| HSP90 [Plesiocystis pacifica SIR-1]
          Length = 644

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 23/102 (22%)

Query: 20  IERPSIAI---KELIENSLDAESSRVETVI-----AGGGKS---FFQITDNGFGMTSE-- 66
           + + S A+   +EL++NS+DA SS+VE  +      GGG +      + D G GM  E  
Sbjct: 14  VTQFSSALDFYRELVQNSIDAGSSQVEIWLDFLPDEGGGTNGVIEIHVDDFGDGMNEEII 73

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTL 108
           +  +      T K  +D + I  FG        IG VS   +
Sbjct: 74  DSQLTTLFSST-K-ENDLTKIGKFG--------IGFVSVFAI 105


>gi|125972860|ref|YP_001036770.1| histidine kinase [Clostridium thermocellum ATCC 27405]
 gi|256005730|ref|ZP_05430685.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281417059|ref|ZP_06248079.1| histidine kinase [Clostridium thermocellum JW20]
 gi|125713085|gb|ABN51577.1| histidine kinase [Clostridium thermocellum ATCC 27405]
 gi|255990303|gb|EEU00430.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281408461|gb|EFB38719.1| histidine kinase [Clostridium thermocellum JW20]
 gi|316940902|gb|ADU74936.1| ATP-binding region ATPase domain protein [Clostridium
          thermocellum DSM 1313]
          Length = 188

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 31 IENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ++NS+DA++S++  +I           ++ DNG GM S+ +   V    T
Sbjct: 12 VQNSIDAKASKISILICADKKSDLLEIEVKDNGIGMDSDFLKEVVNPFTT 61


>gi|226354971|ref|YP_002784711.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226316961|gb|ACO44957.1| putative histidine kinase, classic; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 528

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV--IAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R    I  L+ N+L A +  V     +  GG     ++ D+G G+  +++     R  
Sbjct: 409 DRLKQVIINLVGNALKAGARTVTLRSALEDGGTQVHLRVQDDGPGIPEDQLERLFDRFY 467


>gi|289580320|ref|YP_003478786.1| DNA topoisomerase VI subunit beta [Natrialba magadii ATCC 43099]
 gi|289529873|gb|ADD04224.1| DNA topoisomerase VI, B subunit [Natrialba magadii ATCC 43099]
          Length = 824

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 41/215 (19%)

Query: 23  PSIAIKELIENSLDAESSR------VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR- 74
              A+KE ++N+LDA +        +   I   G      + DNG G+T E +P    + 
Sbjct: 47  LVTAVKEAVDNALDA-AEEAGILPDIYVEIQEEGDYYRLIVEDNGPGLTKESLPKVFGKL 105

Query: 75  ------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQ 120
                 H             + G +G  +    AV  S LT      + SR    +    
Sbjct: 106 LYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGKPAKITSRTEGTDEAQY 154

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
             +  +   +   +++   T     D        L    + +    L  + I+  A+  P
Sbjct: 155 FELIVDTDDNEPEISVEETTTW---DRPHGTRIELEMEANMRARQQLH-NYIKHTAVVNP 210

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
                       +    F+      PE   ++   
Sbjct: 211 HARLELR---EPKAHFKFERATDQLPEETEEIRPH 242


>gi|332672326|ref|YP_004421570.1| topoisomerase II large subunit [Campylobacter phage NCTC12673]
 gi|327493503|gb|AEA86362.1| topoisomerase II large subunit [Campylobacter phage NCTC12673]
          Length = 616

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 31/180 (17%)

Query: 29  ELIENSLD----AE---SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS-- 78
           E I+NS+D         ++++   I    G     I+DNG G+  +   MA  +  TS  
Sbjct: 59  EAIQNSIDEFTRTGGKYANKISLKIDKDSGI--ITISDNGRGLPIDTYVMATTKFRTSSN 116

Query: 79  -----KISDDFSNIHTFGFRGEALPSIGA------VSHLTLMSRPPQNNTGAQIAISGEK 127
                K   D   I   G        IG+       S   L +   + + G    ++   
Sbjct: 117 YTFLEKEKKDRITIGAHG--------IGSKLIPLFSSEYQLTTITLEGDRGIVKCLNNMS 168

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
           I   +       +   V   F     RL   +      N I  ++  +A + P + FTF 
Sbjct: 169 IIEHKEDKAPASSTHGVTIKFKPDFERLELKEINDDLINHIHALLINIAYSNPGIEFTFQ 228


>gi|302551688|ref|ZP_07304030.1| ATPase [Streptomyces viridochromogenes DSM 40736]
 gi|302469306|gb|EFL32399.1| ATPase [Streptomyces viridochromogenes DSM 40736]
          Length = 517

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 33/111 (29%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFF---QITDNGFGMTSEEIPMAVQRHCTSKISD 82
           A+ +LI+NS+DA++  +                I DNG GM    +  A           
Sbjct: 41  AVADLIDNSIDADADTIVVHFLRD-ADRILTLLIIDNGKGMDEAGLDAA----------- 88

Query: 83  DFSNIHTFGFR---GE-AL---------PSIGAVSHLTLMSRPPQNNTGAQ 120
                 T G R   GE AL          S+   S LT++SR  ++    +
Sbjct: 89  -----MTVGRRRDYGEGALGMYGTGLKAASLSHASSLTVVSRTRRSRAAGR 134


>gi|304915|gb|AAA20098.1| DNA repair protein [Escherichia coli]
          Length = 23

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 1  MKIRKLSEKIINQIAAGEIIERP 23
          M I+ L  ++ NQIAAGE++ERP
Sbjct: 1  MPIQVLPPQLANQIAAGEVVERP 23


>gi|163749330|ref|ZP_02156579.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99]
 gi|161331049|gb|EDQ01975.1| DNA topoisomerase IV subunit B [Shewanella benthica KT99]
          Length = 628

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 37/190 (19%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++++E  +     +  ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIEITLHKD--NSLEVIDDGRGMPVDIHPEEGISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQ--NNTGA 119
            + + + H  +K S+D     + G  G       AL S      + +  R      +   
Sbjct: 88  ELILTKLHAGAKFSNDNYQ-FSGGLHGVGISVVNALSS-----RVEITVRRSGIVYDIAF 141

Query: 120 QIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     E++         N GT V     F+ IP+   +  S     + +T +++  A+ 
Sbjct: 142 EHGDMVEELRETGTCGRRNTGTRVH----FWPIPS---YFDSANFSVSKLTYLLKAKAVL 194

Query: 179 YPKVSFTFST 188
            P +   F+ 
Sbjct: 195 CPGLKIKFTN 204


>gi|162419815|ref|YP_001608342.1| hypothetical protein YpAngola_A4053 [Yersinia pestis Angola]
 gi|162352630|gb|ABX86578.1| conserved hypothetical protein [Yersinia pestis Angola]
          Length = 364

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 17 GEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPM 70
          G++   P +A+ EL+ N+ DA +SRV+ V+    GG     +TD+G GMT E+   
Sbjct: 21 GQVAHVPLVALTELVANAWDAGASRVDLVLPTDIGGI--LTVTDDGHGMTPEQFKK 74


>gi|70921890|ref|XP_734199.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56506715|emb|CAH83404.1| hypothetical protein PC300487.00.0 [Plasmodium chabaudi chabaudi]
          Length = 212

 Score = 54.3 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM--NPGTIVEVRDLFFTIPARLNFLK 159
            VS+LT+ ++  ++ +    +    K +   P A     GTI+   DLF+ +  RL  L 
Sbjct: 1   HVSYLTITTKKRKSLSCYTCSYKDGKPTQKEPTACSGKDGTIIRFDDLFYNMKTRLKTL- 59

Query: 160 SEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           +   E N   DV+++ +I YP V+FT     SN   ++  
Sbjct: 60  NHNDEYNKCLDVLQKYSIHYPHVTFTCKKWLSNVVDLSTY 99


>gi|260427187|ref|ZP_05781166.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp.
           SE45]
 gi|260421679|gb|EEX14930.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp.
           SE45]
          Length = 577

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 22  RPSIAIKELIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N++DA   E+   +E ++A G  +   + DNG G+  E++    +   T
Sbjct: 467 RIEQVLVNLLRNAIDATKSEAHPEIEIILASGETAVLSVRDNGHGI--EDLDALFEPFYT 524

Query: 78  SKISDDFSNIHTFGFRGEALPSIGAVSHL--TLMSRPPQNNTG 118
           +K   D + +      G A+ S G V+ L   L +R   +   
Sbjct: 525 TKQPGDGTGL------GLAISS-GIVADLGGRLTARNGSDGGA 560


>gi|269126045|ref|YP_003299415.1| putative sensor with HAMP domain [Thermomonospora curvata DSM
           43183]
 gi|268311003|gb|ACY97377.1| putative sensor with HAMP domain [Thermomonospora curvata DSM
           43183]
          Length = 973

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 14/69 (20%)

Query: 17  GEIIERPSIAIKELIENSLDAESS-------RVETV--IAGGGKSFFQITDNGFGMTSEE 67
           G+++      + EL+EN     ++       +V     +  GG +  QITDNG G++ E+
Sbjct: 515 GQVVNDLVHLVAELVEN-----ATVFSPQHTKVTVSGHLLSGGGAMLQITDNGVGISPED 569

Query: 68  IPMAVQRHC 76
           +  A  R  
Sbjct: 570 LEQANWRLA 578


>gi|269797250|ref|YP_003311150.1| histidine kinase [Veillonella parvula DSM 2008]
 gi|269093879|gb|ACZ23870.1| histidine kinase [Veillonella parvula DSM 2008]
          Length = 728

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 23 PSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSE 66
          P+  + EL++NS DA+++ V+        G     + D+G GM+ E
Sbjct: 24 PAAMV-ELVKNSYDADATYVKITYKKTNSGLKII-VEDDGHGMSQE 67


>gi|218884530|ref|YP_002428912.1| DNA topoisomerase VI subunit B [Desulfurococcus kamchatkensis
          1221n]
 gi|218766146|gb|ACL11545.1| Type 2 DNA topoisomerase VI subunit B [Desulfurococcus
          kamchatkensis 1221n]
          Length = 530

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 22 RPSIA----IKELIENSLDA-ESS----RVETVIAG----GGKSFFQITDNGFGMTSEEI 68
           P+ A    ++EL+EN+LDA ++      ++  I             + DNG G+  + +
Sbjct: 29 NPARAIYQTVRELVENALDATDAHGIMPDIKISIRKVDEIQEFYRITVEDNGIGIPPDVV 88

Query: 69 PMAVQR 74
          P A  R
Sbjct: 89 PDAFGR 94


>gi|259505959|ref|ZP_05748861.1| sensor histidine kinase [Corynebacterium efficiens YS-314]
 gi|259166440|gb|EEW50994.1| sensor histidine kinase [Corynebacterium efficiens YS-314]
          Length = 471

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 16/83 (19%)

Query: 9   KIINQIAAGEIIE----RPSIAIKELIENSL-----DAESSRVETVIA-GGGKSFFQITD 58
            ++N+  +  ++E    R    +  L+ N L     DA    VE  I+  GG    ++ D
Sbjct: 344 TVVNKTGSLPVVEGDATRLHQVLTNLVNNGLNHGGPDA---SVEIEISAEGGSVLVRVVD 400

Query: 59  NGFGMTSEEIPMAVQRHC---TS 78
           +G GMT+E+     +R     TS
Sbjct: 401 DGVGMTAEDAQHIFERFYRTDTS 423


>gi|25029049|ref|NP_739103.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|23494336|dbj|BAC19303.1| putative sensor kinase [Corynebacterium efficiens YS-314]
          Length = 475

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 16/83 (19%)

Query: 9   KIINQIAAGEIIE----RPSIAIKELIENSL-----DAESSRVETVIA-GGGKSFFQITD 58
            ++N+  +  ++E    R    +  L+ N L     DA    VE  I+  GG    ++ D
Sbjct: 348 TVVNKTGSLPVVEGDATRLHQVLTNLVNNGLNHGGPDA---SVEIEISAEGGSVLVRVVD 404

Query: 59  NGFGMTSEEIPMAVQRHC---TS 78
           +G GMT+E+     +R     TS
Sbjct: 405 DGVGMTAEDAQHIFERFYRTDTS 427


>gi|254932547|ref|ZP_05265906.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293584104|gb|EFF96136.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|332310738|gb|EGJ23833.1| hypothetical protein LMOSA_12240 [Listeria monocytogenes str. Scott
           A]
          Length = 641

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 29  ELIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSE-----EIPMAVQRHCTSKIS 81
           ELI N+ DA++  V     I    ++   + D+G GM+ E           +   T+ I+
Sbjct: 32  ELIANAYDADAKNVYVIDRIDE--ENKLIVEDDGSGMSYENKDVKNFLSVAKESRTNAIN 89

Query: 82  D--DFSNIHTFGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGA--------QIAISGEKIS 129
                +N    G +G   L S+ +VS  + + +      +G         +   +  + +
Sbjct: 90  SYTKLNNRRKMGRKGVGKLASL-SVSENVNIKTIKDGEKSGFVLSRKVINKKLEAINEDT 148

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
                  N GT +E+ +  + +P  L+ + +  ++   + D   R+ +      
Sbjct: 149 ISFIKIKNHGTAIEMTNPTYKLPVHLSTMANNLLKIFPLVDETFRIHLIRGDKH 202


>gi|225012665|ref|ZP_03703100.1| heat shock protein Hsp90 [Flavobacteria bacterium MS024-2A]
 gi|225003198|gb|EEG41173.1| heat shock protein Hsp90 [Flavobacteria bacterium MS024-2A]
          Length = 627

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 36/128 (28%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA                  ++++E  I   GK    + D G GMT +E+ 
Sbjct: 29  LRELISNATDATTKLHHLSSLGEIKGDLGATQIEIKIDKKGKKL-HVIDQGIGMTEDEVQ 87

Query: 70  MAVQRHCTSKISDDFSNIH------------TFGFRGEALPSIGAVS-HLTLMSRPPQNN 116
             +     S   +                    GF      S   VS  + ++++  +++
Sbjct: 88  KYINEVAFSGAEEFLEQYKDSAKDSGIIGHFGLGF-----YSAFMVSEKVEIITKSHKDS 142

Query: 117 TGAQIAIS 124
             A     
Sbjct: 143 PAAHWTCD 150


>gi|56475452|ref|YP_157041.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56311495|emb|CAI06140.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 736

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRH 75
           ER    I  L++N+LDA        +   +     +   + D+G GMTSE +     +  
Sbjct: 613 ERLERVIGHLVQNALDATQDDGKVTIRVDMPDPSSARVAVEDSGCGMTSEFMKERLFKPF 672

Query: 76  CTSK 79
            TSK
Sbjct: 673 HTSK 676


>gi|320451219|ref|YP_004203315.1| sensor histidine kinase [Thermus scotoductus SA-01]
 gi|320151388|gb|ADW22766.1| sensor histidine kinase [Thermus scotoductus SA-01]
          Length = 468

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N++ A +  +       G K   ++ D+G G+  E +P   +R  
Sbjct: 355 DRLHQVLANLLSNAIKAGARHIWLRAFDLGEKVVVRVEDDGEGIPKEHLPHLFERFY 411


>gi|124262849|ref|YP_001023319.1| hypothetical protein Mpe_B0309 [Methylibium petroleiphilum PM1]
 gi|124262095|gb|ABM97084.1| hypothetical protein Mpe_B0309 [Methylibium petroleiphilum PM1]
          Length = 609

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM-TSEEIPMAVQRHCT 77
          A+ EL+ NS+DA +++V+  + G   +   ++D+G G  + EEI    +   T
Sbjct: 20 AVLELVMNSIDAGATKVQVTLTG---THLTVSDDGRGFQSREEIENWFETFGT 69


>gi|210631988|ref|ZP_03297153.1| hypothetical protein COLSTE_01045 [Collinsella stercoris DSM 13279]
 gi|210159790|gb|EEA90761.1| hypothetical protein COLSTE_01045 [Collinsella stercoris DSM 13279]
          Length = 466

 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 16  AGEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKS--FFQITDNGFGMTSEEI 68
           A E++  P+  I+ L+EN++     D  + ++   +   G++    ++ D+G GM  +  
Sbjct: 340 AEEVLI-PAFVIQPLVENAVRHAMPDEGALKISITVERAGEAAVSIRVADDGMGMDEQTA 398

Query: 69  PMAVQR 74
                R
Sbjct: 399 MRLFDR 404


>gi|237726504|ref|ZP_04556985.1| predicted protein [Bacteroides sp. D4]
 gi|229435030|gb|EEO45107.1| predicted protein [Bacteroides dorei 5_1_36/D4]
          Length = 700

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAGGGKSF----FQITDNGFGMTSEEIP 69
          I     A+ EL++N  DA +  V  +    G        ++ D+G+GM+ E+I 
Sbjct: 24 ITDRVTALFELVKNCYDANAQNVNVIFENVGVGKKQAVIRVEDDGYGMSFEDIR 77


>gi|124027833|ref|YP_001013153.1| DNA topoisomerase VI subunit B [Hyperthermus butylicus DSM 5456]
 gi|123978527|gb|ABM80808.1| Type II DNA topoisomerase VI subunit B [Hyperthermus butylicus DSM
           5456]
          Length = 535

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 18/76 (23%)

Query: 22  RPSIA----IKELIENSLDAESS-------RVETVI----AGGGKSFFQITDNGFGMTSE 66
            P+ A    ++EL+EN+LDA  +        +  VI             + DNG G+  +
Sbjct: 34  SPARALYQTVRELVENALDA--TDVHGILPDITIVIERVNENSNYYRITVEDNGIGIQPQ 91

Query: 67  EIPMAVQR-HCTSKIS 81
            +P A  +   +SK  
Sbjct: 92  YVPYAFGQVLYSSKYK 107


>gi|134298176|ref|YP_001111672.1| hypothetical protein Dred_0298 [Desulfotomaculum reducens MI-1]
 gi|134050876|gb|ABO48847.1| hypothetical protein Dred_0298 [Desulfotomaculum reducens MI-1]
          Length = 543

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 3  IRKLSEKIINQ---IAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKS--FFQIT 57
          I+KL+   ++    IA   +   P   I+E I NS DA+++ +   I     +    QI+
Sbjct: 5  IKKLNVNEVSLYREIAKNLV--NPLEVIREAISNSHDAQANEIRIKIYRNSDNALCIQIS 62

Query: 58 DNGFGMTSEEIP 69
          D+G GM+ E+  
Sbjct: 63 DDGKGMSEEDFE 74


>gi|327310398|ref|YP_004337295.1| DNA topoisomerase VI subunit B [Thermoproteus uzoniensis 768-20]
 gi|326946877|gb|AEA11983.1| DNA topoisomerase VI, B subunit [Thermoproteus uzoniensis 768-20]
          Length = 528

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 18/77 (23%)

Query: 21  ERPSIA----IKELIENSLDAESS-------RVETVIA--GGGKS--FFQITDNGFGMTS 65
           + P+ A    ++EL+ENSLDA  +        +   I      KS     + DNG G+  
Sbjct: 26  QNPARAMYQTVRELVENSLDA--TEPYGILPNITITIKPVDEAKSWYSVYVEDNGVGIPG 83

Query: 66  EEIPMAVQR-HCTSKIS 81
            EIP    R   +SK  
Sbjct: 84  HEIPNVFGRVFYSSKYK 100


>gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis]
 gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis]
          Length = 754

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 26  AIKELIENSLDAESSRVETVIA-----GGGKS--FFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++NS DA++SR++ +I        GK      I D+G GMT +E+          
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGH-- 321

Query: 79  KIS--DDFSNIHTFG 91
           K    DD   I  FG
Sbjct: 322 KQPDVDDLDRIGRFG 336


>gi|218961478|ref|YP_001741253.1| Sensory transduction histidine kinase [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730135|emb|CAO81047.1| Sensory transduction histidine kinase [Candidatus Cloacamonas
          acidaminovorans]
          Length = 189

 Score = 53.9 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 31 IENSLDAESSRVETVIAGGGKSFF---QITDNGFGMTSEEIPMAVQRHCTSK 79
          IENS+ A++  ++  I    +       + D+G GM S+ +  A     TSK
Sbjct: 12 IENSVRAKAKNIKIRIIRDVQDNILRLIVEDDGVGMDSQTLDKAQSPFYTSK 63


>gi|119510355|ref|ZP_01629490.1| hypothetical protein N9414_15867 [Nodularia spumigena CCY9414]
 gi|119464992|gb|EAW45894.1| hypothetical protein N9414_15867 [Nodularia spumigena CCY9414]
          Length = 607

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 16/129 (12%)

Query: 26  AIKELIENSLDAESSRVET-------VIAGGGKSFFQ---ITDNGFGMTSEEIPMAVQRH 75
           AI EL++N++ A +S+VE         +    +S  +   + DNG GM ++ + +A+Q  
Sbjct: 29  AIAELMDNAIQAGASQVELLCGERKQQVEERKRSRIEQIAVLDNGKGMDADVLRLALQFG 88

Query: 76  CTSKISDDFSN-IHTFGFRGEALP--SIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
             + +++D    I  FG     LP  SI     + + +            +   +I S +
Sbjct: 89  NGTYLAEDKHTGIGRFGM---GLPSSSISQCQRVDVWTWQNGVENALHSYLDLNEIKSRQ 145

Query: 133 PVAMNPGTI 141
              +   T 
Sbjct: 146 MTEVPEPTT 154


>gi|149926990|ref|ZP_01915248.1| hypothetical protein LMED105_09052 [Limnobacter sp. MED105]
 gi|149824211|gb|EDM83431.1| hypothetical protein LMED105_09052 [Limnobacter sp. MED105]
          Length = 615

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 25 IAIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSEEIPM 70
            + ELI NS DA+++ V+     +    +    I D+G GMT EE+  
Sbjct: 27 SVLSELISNSWDADATTVKVDFLTLEN--RKEISIRDDGHGMTFEELNK 73


>gi|170036716|ref|XP_001846208.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167879605|gb|EDS42988.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 634

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 109/358 (30%), Gaps = 51/358 (14%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
            S  +  L++NS+DA S  V   I      + Q+ DNG G    ++    +  C+  ++ 
Sbjct: 4   LSEVVIALLKNSVDAHSFSVAIRI-CPELFWLQVLDNGDGFDEADLASVGK--CSCPVNI 60

Query: 83  DFSNIH-----------TFGFRGEALPSIGAVSHLTLMS---RPPQNNTGAQIAISG--- 125
           DF  +            +       L  IG    + + +   R     + ++        
Sbjct: 61  DFKQMKPVKKFARLTGSSL------LEIIGRCEEVRIETLDCRHGDAKSHSRSFKHPAAA 114

Query: 126 ----------EKISSVRPVAMNPGTIVEVRDLFFTIPAR-LNFLKSEQVETNLITDVIRR 174
                           + V  + GT V ++++F+  P R     +    +   +   +R 
Sbjct: 115 GHNSSQADGTTTQYQRQCVRKSQGTTVTLKNVFWQDPDRGRRHSRKTDDDYRKLLADLRA 174

Query: 175 MAIAYPKVSFTFSTI--KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            A+ +   SFT   +      +K   + T  +    + Q+  +D            + + 
Sbjct: 175 FALVHFDRSFTLQNLSTSEVEFKSKKKPTLASKYCELYQLSEQDVDI----TTCTKDNVC 230

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP 292
           ++GY                FING                 + +   +  +  +L+   P
Sbjct: 231 IEGYFSRREARPTLEPVQLTFINGLPSDAYLPT------VNDVLTQQKQSLDFVLVATYP 284

Query: 293 --RQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
               +     P       R     +  +    ++AI             +  ++  +D
Sbjct: 285 KNDVLTQLTEPVLRNCLLRCLNQYKKSLENRRKQAIVVVSPEQIPAPQPQPHAADEED 342


>gi|308461931|ref|XP_003093253.1| hypothetical protein CRE_06125 [Caenorhabditis remanei]
 gi|308250651|gb|EFO94603.1| hypothetical protein CRE_06125 [Caenorhabditis remanei]
          Length = 874

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 22 RPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           P  AI EL++N+ DA+++ +E   +   G  + +  DNG GM+ EE+   +    + K 
Sbjct: 25 SPFSAIAELVDNAYDADAATLEINLVQHFGDYYLEFKDNGTGMSQEEVAKTILFGHSKKT 84

Query: 81 SDDFSNIHTFG 91
          S+    I  +G
Sbjct: 85 SE---KIGRYG 92


>gi|170731362|ref|YP_001763309.1| hypothetical protein Bcenmc03_0006 [Burkholderia cenocepacia
          MC0-3]
 gi|169814604|gb|ACA89187.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 497

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMA 71
            + A+ ++++NS+ A ++ V    +  G  S   + DNG GM+  E+  A
Sbjct: 25 STAAALADIVDNSISAGATEVRIDFSWAGPNSRISVLDNGRGMSDAELESA 75


>gi|294139238|ref|YP_003555216.1| DNA topoisomerase IV subunit B [Shewanella violacea DSS12]
 gi|293325707|dbj|BAJ00438.1| DNA topoisomerase IV, B subunit [Shewanella violacea DSS12]
          Length = 628

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 39/220 (17%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++++E  +     +  ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIEITLHKD--NSLEVIDDGRGMPVDIHPEEGISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQ--NNTGA 119
            + + + H   K S+D     + G  G       AL S      + +  R      +   
Sbjct: 88  ELILTKLHAGGKFSNDNYQ-FSGGLHGVGISVVNALSS-----RVEITVRRSGIVYDIAF 141

Query: 120 QIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     E++         N GT V     F+ IP+   +  S       +T +++  A+ 
Sbjct: 142 ENGDMVEELRETGTCGRRNTGTRVH----FWPIPS---YFDSANFSVPKLTYLLKAKAVL 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
            P +   F+       ++          + +     +  +
Sbjct: 195 CPGLKIKFTN--KQTDEVQEWFYESGLTDYLQSSTKDAIM 232


>gi|110668559|ref|YP_658370.1| DNA topoisomerase VI subunit B [Haloquadratum walsbyi DSM 16790]
 gi|109626306|emb|CAJ52764.1| DNA topoisomerase VI subunit B (type II DNA topoisomerase)
           [Haloquadratum walsbyi DSM 16790]
          Length = 1304

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 23  PSIAIKELIENSLDAESSR-------VETVIAGGG--KSFFQITDNGFGMTSEEIPMAV 72
              A+KE ++N+LDA  +        +   I   G   +   + DNG G+T E++P   
Sbjct: 47  LVTAVKEAVDNALDA--TEEAGIKPDISIEIRESGDYYTLI-VEDNGPGITREQVPKVF 102


>gi|330960678|gb|EGH60938.1| hypothetical protein PMA4326_19233 [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 673

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          P+  + E++ N+ DA+++ V+  I         + D+G GM   E+     R
Sbjct: 34 PA-VVTEIVANAWDADANLVDVDIQD---DKIVVHDDGHGMGPGELQARFLR 81


>gi|327398516|ref|YP_004339385.1| histidine kinase [Hippea maritima DSM 10411]
 gi|327181145|gb|AEA33326.1| histidine kinase [Hippea maritima DSM 10411]
          Length = 317

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 26  AIKELIENSLDAESS----RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I E+I+N++DA  +    ++E  +   GK+ F ++ DNG G+   E+P+      ++K
Sbjct: 235 IIDEIIKNAIDATQTVEKPKIEIKVFKKGKNAFIEVKDNGKGIEENELPLTTIPFYSTK 293


>gi|126664910|ref|ZP_01735893.1| hypothetical protein MELB17_17619 [Marinobacter sp. ELB17]
 gi|126630280|gb|EBA00895.1| hypothetical protein MELB17_17619 [Marinobacter sp. ELB17]
          Length = 608

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 26  AIKELIENSLDAESSRVETV-------IAGGGKSFFQ---ITDNGFGMTSEEIPMAVQRH 75
           AI ELI+NS  A +S +E +       I    +S      + DNG GM +  + MA+Q  
Sbjct: 30  AIAELIDNSQQAGASEIEVICLETEKMIEERRRSRIDRLAVIDNGQGMDAVTLRMALQFG 89

Query: 76  CTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
             +++ +D S I  FG     L   SI   + + + S     +      I  ++I     
Sbjct: 90  NGTRL-NDRSGIGRFGM---GLPNASISQAARVDVWSWQNGADNALHSYIDVDEIRQGHQ 145


>gi|218128916|ref|ZP_03457720.1| hypothetical protein BACEGG_00488 [Bacteroides eggerthii DSM
          20697]
 gi|217988879|gb|EEC55196.1| hypothetical protein BACEGG_00488 [Bacteroides eggerthii DSM
          20697]
          Length = 700

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAG--GGKS--FFQITDNGFGMTSEEIP 69
          I     A+ EL++N  DA +  V  +      GK     ++ D+G+GM+ E+I 
Sbjct: 24 ITDRVTALFELVKNCYDANAQNVNVIFENVGAGKKQAVIRVEDDGYGMSFEDIR 77


>gi|331091526|ref|ZP_08340363.1| hypothetical protein HMPREF9477_01006 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403691|gb|EGG83245.1| hypothetical protein HMPREF9477_01006 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 373

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 31  IENSLDAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++N+++  +++V+         +   I DNG G+  E++P   +R   SK
Sbjct: 279 VKNAIEHGATKVKISWEENYIYTKISIWDNGEGIDEEDLPHIFERFYKSK 328


>gi|296139306|ref|YP_003646549.1| hypothetical protein Tpau_1589 [Tsukamurella paurometabola DSM
          20162]
 gi|296027440|gb|ADG78210.1| hypothetical protein Tpau_1589 [Tsukamurella paurometabola DSM
          20162]
          Length = 698

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPM 70
           P  A+ EL+ N LDA +  V   I    KS    ++ D+G GM+ +EI +
Sbjct: 27 NPWSALSELVANGLDANAETVYVYIDASIKSNATVEVIDDGDGMSRDEIGL 77


>gi|312114241|ref|YP_004011837.1| hypothetical protein Rvan_1483 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219370|gb|ADP70738.1| hypothetical protein Rvan_1483 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 664

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 33/190 (17%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--KI 80
           P+  + E++ N+ DA++  V+  I         I D+G GM  +     + R  T   K 
Sbjct: 28  PA-VLSEVVANAWDADARNVQVTINRV-AETITIEDDGTGMDRD---GVIDRFLTVGFKR 82

Query: 81  SDDFSNIHTFGFR--GE------ALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
            D+  ++   G +  G       ++ SI  V+   + +      T  ++     + +   
Sbjct: 83  RDELGDVTALGRKPMGRKGIGKLSIFSIAQVA--EVFTTLNGERTAFRMDRDIIRKAIAG 140

Query: 133 PVAMNPGTIVEVRDLFFTIP------ARLNFLKSEQVETNLITDVIRRMAIAY-----PK 181
                        +     P       R+   K  +  + +  + ++R          PK
Sbjct: 141 KSENIYRP-----EELTNWPPDLVAGTRIVLSKISRSLSGMTVEGLKRRVARRFSVIGPK 195

Query: 182 VSFTFSTIKS 191
             FT     +
Sbjct: 196 NDFTVQINGN 205


>gi|226223283|ref|YP_002757390.1| hypothetical protein Lm4b_00680 [Listeria monocytogenes Clip81459]
 gi|225875745|emb|CAS04448.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 713

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 32/115 (27%)

Query: 25  IAIKELIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS- 81
            AI ELI N +DA ++++     +    K+  +I DNG GM  +++         SK   
Sbjct: 30  SAISELIANGIDARATKISLYMNLIDKEKAVIEIFDNGTGMDYDDLV--------SKYVH 81

Query: 82  ----------DDFSNIHTFGFRGEALPSIGAVSHLT------LMSRPPQNNTGAQ 120
                     DD       G +G     IG ++ L       L+S+    ++   
Sbjct: 82  IGRNKRDEELDDVERNALMGRKG-----IGKLAALNLSQKYYLISKTRNESSLWC 131


>gi|56461707|ref|YP_156988.1| signaling protein [Idiomarina loihiensis L2TR]
 gi|56180717|gb|AAV83439.1| Predicted signaling protein with an ATPase domain [Idiomarina
          loihiensis L2TR]
          Length = 745

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 12/74 (16%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
          R+L E++++   + E+      A+ ELI+NS DA+++      +    S   + D G GM
Sbjct: 16 RELGEQLVS---SSEV------ALTELIKNSYDADATSCNVEWSD---SRIVVKDTGHGM 63

Query: 64 TSEEIPMAVQRHCT 77
          + ++      R  T
Sbjct: 64 SLDDFKNKWMRIAT 77


>gi|20807497|ref|NP_622668.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516026|gb|AAM24272.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 462

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 27  IKE----LIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IKE    L++N+  A+ +     +E  I  G +++ ++ D+G G+  E++P   +R  
Sbjct: 353 IKEVLRILLDNA--AKYTSKNGNIEIEIGSGDEAYIKVKDDGIGIPEEDLPYIFERFY 408


>gi|56554422|pdb|1X9Z|A Chain A, Crystal Structure Of The Mutl C-Terminal Domain
 gi|56554423|pdb|1X9Z|B Chain B, Crystal Structure Of The Mutl C-Terminal Domain
          Length = 188

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 400 EATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLT 459
                  G     +H +  + +    + ++    A   L   ++        + +Q LL 
Sbjct: 2   SHMSQSFGRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQL--TPGEAPVCAQPLLI 59

Query: 460 PEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
           P  + +   E + + +    L  LGI  +      + IR +P  L ++N+  L+ ++I  
Sbjct: 60  PLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTIRAVPLPLRQQNLQILIPELIGY 118

Query: 520 IIDSS 524
           +   S
Sbjct: 119 LAKQS 123


>gi|292490249|ref|YP_003525688.1| hypothetical protein Nhal_0081 [Nitrosococcus halophilus Nc4]
 gi|291578844|gb|ADE13301.1| hypothetical protein Nhal_0081 [Nitrosococcus halophilus Nc4]
          Length = 609

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 40/148 (27%)

Query: 17  GEIIERPSIAIK---------------ELIENSLDAESSRVETV-------IAGGGKSF- 53
           GE+I  PS+A+K               ELI+NS+ A +S VE         +    +   
Sbjct: 16  GEVIP-PSLAVKAMRDSGYKNTAYALAELIDNSIQAGASFVEVFCIEKRVLVREQKRRRI 74

Query: 54  --FQITDNGFGMTSEEIPMAVQR----HCTSKISDDFSNIHTFGFRGEAL--PSIGAVSH 105
               + DNG GM S  + +A+Q     H      +D   I  FG     L   SI     
Sbjct: 75  AEIAVLDNGTGMDSSILRLALQFGNGTH-----LNDRDGIGRFGM---GLPNASISQCRR 126

Query: 106 LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           + + +     +      +  +++ S + 
Sbjct: 127 VDIWTWQAGPDNAIHTYLDVDEVESGKM 154


>gi|240256429|ref|NP_199891.4| ATP binding [Arabidopsis thaliana]
 gi|332008608|gb|AED95991.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Arabidopsis thaliana]
          Length = 819

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD---AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD   + ++ V   +      G     I DNG GM  E++   +    +  SK+
Sbjct: 176 ELLDNALDEVRSGATFVNVDMIQNRKDGSKMILIEDNGGGMNPEKMRHCMSLGYSAKSKL 235

Query: 81  SDDFSNIHTFG 91
           +D    I  +G
Sbjct: 236 AD---TIGQYG 243


>gi|168002477|ref|XP_001753940.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694916|gb|EDQ81262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 711

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 26  AIKELIENSLDAESSRVETVIAG------GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           A+ ELI+N+ DA+++R+E  I        G     Q+ DNG GM  EEI   +       
Sbjct: 162 AVAELIDNARDAKATRLEISIEDMVLGETGTVPVLQMVDNGLGMNHEEIVKMLSFGHKRP 221

Query: 80  ISDDFSNIHTFG 91
              D   I  FG
Sbjct: 222 GESDAEQIGHFG 233


>gi|322385935|ref|ZP_08059576.1| sensor histidine kinase [Streptococcus cristatus ATCC 51100]
 gi|321270050|gb|EFX52969.1| sensor histidine kinase [Streptococcus cristatus ATCC 51100]
          Length = 735

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 25 IAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMA 71
           AI ELI+N+ DA +S++  +       G+   +I D+G GM   +I  A
Sbjct: 28 SAILELIKNAYDAGASKLNLIFKKSEDTGRLMLEIIDDGSGMDENDIRQA 77


>gi|170719870|ref|YP_001747558.1| hypothetical protein PputW619_0684 [Pseudomonas putida W619]
 gi|169757873|gb|ACA71189.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 673

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          P+  + E++ N+ DA++  V   I         + D+G GM   E+     R
Sbjct: 34 PA-VVTEIVANAWDADAHTVTVDIQQ---DKIIVQDDGHGMGHGELQARFLR 81


>gi|297539210|ref|YP_003674979.1| DNA topoisomerase [Methylotenera sp. 301]
 gi|297258557|gb|ADI30402.1| DNA topoisomerase (ATP-hydrolyzing) [Methylotenera sp. 301]
          Length = 661

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 73/218 (33%), Gaps = 35/218 (16%)

Query: 21  ERPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
           E P+  ++E+I+N+ D A    ++ ++  I   G    +++DNG G+  E         +
Sbjct: 31  ESPTHIVQEVIDNAADEALGGHATTIQVTIFKDGA--VEVSDNGRGIPVEIPKGETQPAV 88

Query: 69  PMAV-QRHCTSKISDDFSNIHTFGFRG----------EALPSIGAVSHLTLMSRPPQNNT 117
            +   Q H   K   +  N  ++ F G           AL +      L +  +      
Sbjct: 89  ELVFVQLHAGGKFDKEDEN-SSYRFSGGLHGVGVSVTNALST-----RLDVTVKRDGKVH 142

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                                         +        +  S +V    +  +I+  A+
Sbjct: 143 SLSFENGNCVTPLTETGKCLKKDTGTTVKCW----PDPKYFDSPKVSLQQLEHLIKSKAV 198

Query: 178 AYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGE 215
               VS T S   ++ ++    +     P+ + ++IGE
Sbjct: 199 LLRGVSVTLSIEGNDGFEERSWTYVDGLPQYLDELIGE 236


>gi|261339109|ref|ZP_05966967.1| hypothetical protein ENTCAN_05323 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318946|gb|EFC57884.1| hypothetical protein ENTCAN_05323 [Enterobacter cancerogenus ATCC
           35316]
          Length = 693

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 22/168 (13%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP---MAVQRHCTSK 79
           P+  I ELI NS DA++  V   IA        ITD+G GM+  E+    + + +   SK
Sbjct: 28  PTNVIAELISNSWDADAQNVWIEIAQ---DKVSITDDGCGMSYTELMNDYLIIGKKKRSK 84

Query: 80  --ISDDFSNIH-TFGFRGEALPSIGAVS------HLTLMSRPPQNNTGAQIAISGEKISS 130
             I++  +      G +G     IG ++       LTL++   +      I +   K+ S
Sbjct: 85  DNITEKTARQRNMMGRKG-----IGKLAPFGIAKKLTLITISKEEKLYNWIQLDLSKMLS 139

Query: 131 VRPVAMNPGTIV-EVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                    +I+ E   L   IP         ++E   I D ++    
Sbjct: 140 EENDDFPNDSIIYEPTILADNIPIEKIDTA-LKLEYKKILDKLKESGT 186


>gi|71483086|gb|AAZ32519.1| DNA topoisomerase VI subunit B [uncultured euryarchaeote Alv-FOS4]
          Length = 631

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 56/191 (29%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +KE ++NSLDA  E+     +   I   GK      + DNG G+  + IP+        K
Sbjct: 40  VKEAVDNSLDACEEARILPDITVQIEQVGKDEYRMIVEDNGPGIVRKNIPLVFG-----K 94

Query: 80  ISDDFSNIHTFGFRGEALP-S-------IGAV---SHLT------LMSRPPQNNTGA--- 119
           +         +G R  AL  S       I AV     L+      ++S+  +        
Sbjct: 95  LL--------YGSRFHALRQSRGQQGIGISAVVLYGQLSTGKPARIISKIKEEEVAYEVL 146

Query: 120 -----QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
                +                  GT +EV      +  R N  K        + + +++
Sbjct: 147 LTIDTKKNAPKIIKEEPVIWDREQGTRIEVV-----MRTRYNRGKQS------VYEYLQQ 195

Query: 175 MAIAYPKVSFT 185
            AI  P    T
Sbjct: 196 TAIVNPHAQIT 206


>gi|300777714|ref|ZP_07087572.1| sensor histidine kinase [Chryseobacterium gleum ATCC 35910]
 gi|300503224|gb|EFK34364.1| sensor histidine kinase [Chryseobacterium gleum ATCC 35910]
          Length = 389

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 6   LSEKII----NQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQIT 57
           L    +    N+I    +IE        L++N++DA     +  +            ++ 
Sbjct: 272 LPTYTVLVPHNKILISWVIEN-------LVKNAVDAMKGEGAITISV-FERNKNILIEVK 323

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG GMT ++   A     ++K
Sbjct: 324 DNGSGMTKQQARNAFNPGYSTK 345


>gi|222149029|ref|YP_002549986.1| hypothetical protein Avi_2743 [Agrobacterium vitis S4]
 gi|221736014|gb|ACM36977.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 494

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 18/109 (16%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMA--------V 72
            P  A+ +LI+NS+ A +  VE  I    G     + D+G GMT  E+  A        +
Sbjct: 23  SPETALADLIDNSISAGADHVELSIDWNEGNPRIGLLDDGLGMTRGELEDAMRFGGDMDI 82

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +R       DD       G +     S+     LT++SR   +      
Sbjct: 83  ERG-----PDDLGRFG-LGMK---TASLSQCQRLTVVSRKAGHECSMCW 122


>gi|9757986|dbj|BAA96991.2| unnamed protein product [Arabidopsis thaliana]
          Length = 823

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD---AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD   + ++ V   +      G     I DNG GM  E++   +    +  SK+
Sbjct: 176 ELLDNALDEVRSGATFVNVDMIQNRKDGSKMILIEDNGGGMNPEKMRHCMSLGYSAKSKL 235

Query: 81  SDDFSNIHTFG 91
           +D    I  +G
Sbjct: 236 AD---TIGQYG 243


>gi|10956884|ref|NP_049104.1| hypothetical protein pNL1_p056 [Novosphingobium aromaticivorans]
 gi|146275551|ref|YP_001165712.1| hypothetical protein Saro_3944 [Novosphingobium aromaticivorans DSM
           12444]
 gi|3378317|gb|AAD03900.1| unknown [Novosphingobium aromaticivorans]
 gi|145322242|gb|ABP64186.1| hypothetical protein Saro_3944 [Novosphingobium aromaticivorans DSM
           12444]
          Length = 533

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 30/126 (23%)

Query: 25  IAIKELIENSLD-------------AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
            AI+E ++N LD             A++ +++  +   G     I DNG G+  +   +A
Sbjct: 38  SAIREYLQNGLDAVMQAVDGGIMAFADA-KIDVTLEDDGL---VIRDNGIGLGVD---LA 90

Query: 72  VQR----HCTSKISDDFSNIHTFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           V R      +SK   D   +   GFRG   L  I     L  +++    +   +I  +  
Sbjct: 91  VSRLTSIGASSK---D-YRVQA-GFRGIGRLAGIAFCDRLVFLTKAQGESECTRIEFNAN 145

Query: 127 KISSVR 132
           ++    
Sbjct: 146 QLRKDM 151


>gi|188993951|ref|YP_001928203.1| hypothetical protein PGN_0087 [Porphyromonas gingivalis ATCC
          33277]
 gi|188593631|dbj|BAG32606.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
          33277]
          Length = 636

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 29 ELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          EL+ N+ DA +++V   I    G     I DNG G+T+EE  
Sbjct: 36 ELVANAWDAGATKVSVFIPDEYG-DLLVIEDNGNGLTAEEFQ 76


>gi|332288284|ref|YP_004419136.1| DNA mismatch repair protein [Gallibacterium anatis UMN179]
 gi|330431180|gb|AEC16239.1| DNA mismatch repair protein [Gallibacterium anatis UMN179]
          Length = 661

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 82/263 (31%), Gaps = 43/263 (16%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           P+  + E++ NS DA+++ V   +    KS   I+DNG GM + +I         SK  +
Sbjct: 23  PA-VLTEIVSNSWDADATEVHIDV-NSDKSIITISDNGHGMNAVDIE--------SKFLN 72

Query: 83  DFSNIH------------TFGFRGE---ALPSIGAVSHLTLMSRPPQNNTGA-------- 119
                               G +G    A+ S+     +++ ++   +   A        
Sbjct: 73  VGYARRKDNREKSPNGRPVMGRKGIGKLAMFSLAN--EVSVFTKTQNDEIVALKVNVSDL 130

Query: 120 ------QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
                 Q     E I+     +   GT + +  L   I     +LK        I     
Sbjct: 131 KRAIEEQREYDTEVINDTSSFSKTHGTTIVLAQLERGIKTTATYLKKHLARRFSILGQKF 190

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
              +       T         K+ F  + G+  + + +     +     E++  +N   +
Sbjct: 191 NFKVFVNNEEITLEHRG-YISKIEFLWSFGDSSQHLKK-DVTQYKKLPNEVSYDNNSFKI 248

Query: 234 QGYTGIPTFNRGNANQFYVFING 256
            G+           ++     N 
Sbjct: 249 SGFIASVGKPSELKDKDNDISNN 271


>gi|313202497|ref|YP_004041154.1| ATP-binding region ATPase domain protein [Paludibacter
          propionicigenes WB4]
 gi|312441813|gb|ADQ78169.1| ATP-binding region ATPase domain protein [Paludibacter
          propionicigenes WB4]
          Length = 547

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           P  A++E ++N +DA +  ++  I    K+   I D+G GM    +  A +
Sbjct: 26 DPKDALREYVQNGVDAGAKSIQIRIR---KNTISIDDDGIGMDQTTLRKAAR 74


>gi|126465879|ref|YP_001040988.1| DNA topoisomerase VI subunit B [Staphylothermus marinus F1]
 gi|126014702|gb|ABN70080.1| DNA topoisomerase VI, B subunit [Staphylothermus marinus F1]
          Length = 531

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 22 RPSIA----IKELIENSLDA-ESS----RVETVIAGGGK----SFFQITDNGFGMTSEEI 68
           P+ A    I+EL+EN+LDA ++      ++  I    +        + DNG G+    +
Sbjct: 31 NPARALYQTIRELVENALDATDAHGILPNIKVTIEKADQIHEYYKITVEDNGIGIPPHIV 90

Query: 69 PMAVQR 74
          P A  R
Sbjct: 91 PEAFGR 96


>gi|254443594|ref|ZP_05057070.1| hypothetical protein VDG1235_1830 [Verrucomicrobiae bacterium
           DG1235]
 gi|198257902|gb|EDY82210.1| hypothetical protein VDG1235_1830 [Verrucomicrobiae bacterium
           DG1235]
          Length = 1483

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            +  R    + EL++N+ DA ++     I       F    +G     E++        +
Sbjct: 39  TVASRVQHVVSELLQNADDAGATCARIEIEE---DNFVFRHDGADFEPEQLEALCSFAVS 95

Query: 78  SKISDDFSNIHTFGFRG 94
           SK       I T GFRG
Sbjct: 96  SK-----HTIKTTGFRG 107


>gi|325965497|ref|YP_004243401.1| DNA mismatch repair enzyme (predicted ATPase) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323471584|gb|ADX75267.1| DNA mismatch repair enzyme (predicted ATPase) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 485

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 22  RPSIAIKELIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
               A+ +LI+NS+ AE+  +     +  G   +  I D+G GMT  +   A++   T  
Sbjct: 22  SLEAAVADLIDNSITAEADHIVIDADVVEG--KYLAILDDGSGMTPRDAREALRLAGTVG 79

Query: 80  ISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
              D       G  G  L   S+     LTL+++     T  +  I   +
Sbjct: 80  DRKDTD----LGRFGLGLKTASLSQARCLTLITKHAGTVTALRWDIDFVR 125


>gi|269215582|ref|ZP_06159436.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
 gi|269131069|gb|EEZ62144.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
          Length = 360

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 29  ELIENSLDAESSRV--ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF-- 84
           EL+ N+ DA +  +   T ++   ++   + D+G G+         +   TSK+ D    
Sbjct: 58  ELLRNARDAGARTIFFATSLSKNRRTMVIV-DDGAGIPERMWDAVFEPRVTSKL-DALRF 115

Query: 85  SNIHTFGFRGEALPSIGA-VSHLTLMSRPPQNNTGAQIAISG 125
            +    G RG AL SI   VS   +M   P   T  ++ I  
Sbjct: 116 DDWGVHG-RGMALYSISQNVSSARVMQSVPSQGTAVRVDIDP 156


>gi|298374833|ref|ZP_06984791.1| two-component system sensor histidine kinase [Bacteroides sp.
          3_1_19]
 gi|298269201|gb|EFI10856.1| two-component system sensor histidine kinase [Bacteroides sp.
          3_1_19]
          Length = 856

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          EL++NS DA + +V         +  +I DNG GM+  ++ 
Sbjct: 31 ELVKNSYDAHAKKVVITFE---TNSIRIVDNGKGMSFNDLQ 68



 Score = 37.3 bits (85), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           LI NS  A + ++        GK F   +DNG G+   
Sbjct: 762 LISNSKKAGAKKIYVDFKKENGKLFVDFSDNGCGVEEA 799


>gi|167566501|ref|ZP_02359417.1| hypothetical protein BoklE_28346 [Burkholderia oklahomensis
          EO147]
          Length = 377

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 16 AGEIIERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIP 69
          AG II  PS AI EL+ N  DA ++ V+           F I+DNG GMT  E  
Sbjct: 17 AGAIITNPSTAIVELVANCWDAYATEVKISWPDPKNNKQFSISDNGKGMTKAEFD 71


>gi|212693076|ref|ZP_03301204.1| hypothetical protein BACDOR_02583 [Bacteroides dorei DSM 17855]
 gi|212664362|gb|EEB24934.1| hypothetical protein BACDOR_02583 [Bacteroides dorei DSM 17855]
          Length = 490

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 14/150 (9%)

Query: 1   MKIRKLSEKIINQI-AAGEIIE-------RPSIAIKELIENSLDAESSRVET-VIAGGGK 51
           M+I   S +  N I  A  +IE           A+ ++I+NS+ A +  V       G K
Sbjct: 1   MRIDYDSLRTANAIPCAASMIETFRAIGYNIETAVADIIDNSISANAKNVWVTRHWHGDK 60

Query: 52  SFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLM 109
           SF  I D+G GM S+EI  A++    S + +   +    G  G  L   S      LT++
Sbjct: 61  SFITIKDDGCGMNSQEIIDAMRPGSHSPLEE--RSKTDLGRFGLGLKTASFSQCRKLTVL 118

Query: 110 SRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
           S+    ++        + ++      +   
Sbjct: 119 SKKSGYHSAY-WTWDLDYVAQTNEWTLLQW 147


>gi|242278606|ref|YP_002990735.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242121500|gb|ACS79196.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 579

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 18  EIIER---PSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E++         +  LI N+     D  +  +       G+  F + DNG G+   ++  
Sbjct: 461 EVVTDRGKLEQVLLNLINNAFQAMKDGGALWIRVERGDEGQVLFSVKDNGCGIPESDLKR 520

Query: 71  AVQRHCTSK 79
             +   ++K
Sbjct: 521 IFEPFYSTK 529


>gi|328955568|ref|YP_004372901.1| ATP-binding region ATPase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455892|gb|AEB07086.1| ATP-binding region ATPase domain protein [Coriobacterium glomerans
           PW2]
          Length = 360

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 26  AIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD-- 82
            + E++ N+ DA ++ +                DNG G+ ++          TSK+ +  
Sbjct: 53  IVIEMLRNARDAGATEIYVATGKDEDIRTLVFIDNGGGIPADMQERIFDARVTSKLENMK 112

Query: 83  -DFSNIHTFGFRGEALPSI 100
            D   +H  G RG AL SI
Sbjct: 113 MDRWGVH--G-RGMALFSI 128


>gi|326802621|ref|YP_004320439.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650211|gb|AEA00394.1| DNA gyrase, B subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 660

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  + +++  I   G     + DNG G+  +
Sbjct: 67  EIVDNSIDEALAGYADKIDIKIESDG--SITVIDNGRGIPVD 106


>gi|89114228|gb|ABD61709.1| DNA gyrase subunit B [Acholeplasma oculi]
          Length = 594

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +   +  G     Q+TDNG G+  +
Sbjct: 30 EIVDNSIDEALAGYASEITIEVQKGNI--IQVTDNGRGIPVD 69


>gi|89114226|gb|ABD61708.1| DNA gyrase subunit B [Acholeplasma oculi]
 gi|89114230|gb|ABD61710.1| DNA gyrase subunit B [Acholeplasma oculi]
          Length = 594

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +   +  G     Q+TDNG G+  +
Sbjct: 30 EIVDNSIDEALAGYASEITIEVQKGNI--IQVTDNGRGIPVD 69


>gi|331000410|ref|ZP_08324085.1| hypothetical protein HMPREF9439_01728 [Parasutterella
           excrementihominis YIT 11859]
 gi|329571742|gb|EGG53422.1| hypothetical protein HMPREF9439_01728 [Parasutterella
           excrementihominis YIT 11859]
          Length = 469

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 17/135 (12%)

Query: 7   SEKIINQIAAGEII-ERPSIAIKELIENSLDAESSRVETVIAGGGKS--FFQITDNGFGM 63
                N I +   I    + A+ ++++NS+ A +  +    A       F +I D+G GM
Sbjct: 9   PPSPSNLITSLCSIGYDLNSAVADILDNSIAAGAKNIYVDFALHESKEVFLKIEDDGCGM 68

Query: 64  TSEEIPMAVQRHC-----TSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNN 116
              E+  A++        T KISD        G  G  L   S+     L + S+  Q  
Sbjct: 69  KRLELLRAMRFGSFDPRQTRKISD-------LGQFGLGLKTASLSQSDRLVVRSKSDQEA 121

Query: 117 TGAQIAISGEKISSV 131
           +  +  +   +    
Sbjct: 122 SCFEWNLDLVRKKDR 136


>gi|88813626|ref|ZP_01128857.1| hypothetical protein NB231_12961 [Nitrococcus mobilis Nb-231]
 gi|88789131|gb|EAR20267.1| hypothetical protein NB231_12961 [Nitrococcus mobilis Nb-231]
          Length = 603

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 32/140 (22%)

Query: 16  AGEIIERPSIAIK---------------ELIENSLDAESSRVE-------TVIAGGGKSF 53
           AGE+I  PS+A+K               ELI+NS+ A++  VE         +    +  
Sbjct: 9   AGEVIP-PSLAVKAMRDSGYKNTAYALAELIDNSIQAKADLVEVFCVERKIFVKQRERKR 67

Query: 54  FQ---ITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTL 108
                + DNG GM +  + +A+Q           ++    G  G  L   SI     + +
Sbjct: 68  IVEIGVLDNGKGMDAATLRLALQFGN----GTHLADRSGIGRFGMGLPNASISQCRRVDV 123

Query: 109 MSRPPQNNTGAQIAISGEKI 128
            +     +      +    I
Sbjct: 124 WTWQAGPDNALHTCLDINDI 143


>gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 596

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 26  AIKELIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
            ++ L++N++   DAE  ++       G      + DNG G++ +++    +R       
Sbjct: 484 VVRNLLDNAIKYVDAEHGKIRISAFRNGDFVQLDVEDNGIGISKQDLGRIFERFY----R 539

Query: 82  DDFSNIHTFGFRGEALP-----SIGAVSHLTLMSRPPQNNT 117
            D +     G  G  L       +    H+ + SR  Q + 
Sbjct: 540 VDKARSRELGGTGLGLAIVKHIVLAHKGHVEVRSRVSQGSV 580


>gi|310826824|ref|YP_003959181.1| sensor histidine kinase [Eubacterium limosum KIST612]
 gi|308738558|gb|ADO36218.1| sensor histidine kinase [Eubacterium limosum KIST612]
          Length = 415

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 26  AIKELIENSLDAESS--RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           A+  LI+N+LD  S+   +          +   + DNG G+  E+I    +R   S+ S 
Sbjct: 311 AVSNLIKNALDHTSTGGWIAVGWDESAAVTRITVQDNGSGIHPEDIHHIFKRFYRSRFSQ 370

Query: 83  D 83
           D
Sbjct: 371 D 371


>gi|291278519|ref|YP_003495354.1| hypothetical protein DEFDS_0086 [Deferribacter desulfuricans SSM1]
 gi|290753221|dbj|BAI79598.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 473

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESS----RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NSLDA  +     ++  +         +I DNG G+   +I        T+K
Sbjct: 377 LINNSLDALCNETNNTIKINLETNTNFKILEIIDNGCGIPKSDIAKLFTPFYTTK 431


>gi|206896389|ref|YP_002246773.1| periplasmic sensor signal transduction histidine kinase, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206739006|gb|ACI18084.1| periplasmic sensor signal transduction histidine kinase, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 535

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L+ N+ DA +++V       G++   ++ +NG  +  E++    +   T+K
Sbjct: 433 QIVSNLVGNAFDAGATQVWVEARREGQNLVLRVANNGTPIPQEDLGKIFEPFYTTK 488


>gi|323498028|ref|ZP_08103036.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326]
 gi|323316904|gb|EGA69907.1| DNA topoisomerase IV subunit B [Vibrio sinaloensis DSM 21326]
          Length = 626

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 78/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
           ERP+   +E+I+NS+D   A  + +++ ++        ++ D+G GM  +         +
Sbjct: 30  ERPNHLAQEVIDNSVDEALAGHAKKIKVILHAD--QSLEVIDDGRGMPVDIHPEKGISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S+D     + G  G  +  + A+S  + +  +          +   +
Sbjct: 88  ELILTKLHAGGKFSNDNYK-FSGGLHGVGISVVNALSKRVEVTVKREGQVHEIAFEHGNA 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
             +++        N GT V              +  S +  +  + + +R  A+  P + 
Sbjct: 147 VTELTVTGTCGHRNTGTSVHFW-------PDAKYFDSYKFSSLRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TFS       + +         + +++
Sbjct: 200 ITFS--DKVNNEEHKWFYEDGLKDYLAE 225


>gi|228478363|ref|ZP_04062971.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228250042|gb|EEK09312.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 698

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 18/107 (16%)

Query: 25  IAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPM---AVQRHCTSK 79
            AI ELI N LDA ++ V+  I       S  +I DNG GM   ++      + R+   +
Sbjct: 29  SAISELIANGLDAGATNVKLYIESIDKENSKLEILDNGSGMDYVDLATKYALIGRNR--R 86

Query: 80  ISDDFSNIHTFGFRGEALPSIGAVSHL------TLMSRPPQNNTGAQ 120
           IS+   +  T G +G     IG ++ L       ++S+     T   
Sbjct: 87  ISNGEFSEKTKGRKG-----IGKLATLFLSKKYYIVSKKNGIETAWM 128


>gi|92119234|ref|YP_578963.1| histidine kinase [Nitrobacter hamburgensis X14]
 gi|91802128|gb|ABE64503.1| histidine kinase [Nitrobacter hamburgensis X14]
          Length = 946

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGG--KSFFQITDNGFGMTSEEIPMAVQRHCT-SKI- 80
            A+ EL++N  DA++++V+ +       ++  +I DNG GM  E++     R  T +K+ 
Sbjct: 255 TAVAELVKNGYDADATQVDLIFNTASAPQTSLEIYDNGSGMNIEQLEAGFMRLSTPNKVE 314

Query: 81  --SDDFSNIHTFGFRGEALPSIGAVS------HLTLMSRPPQNNTGAQIAISGEKISSVR 132
               +       G +G     IG  +       L L +       G ++ I  ++  + R
Sbjct: 315 HSRSELFARQKAGRKG-----IGRFAAQRLGRRLVLETTTHSARNGLRLDIDWDEFVANR 369

Query: 133 PVAMNPGTIVEVRDLF 148
            ++  P  I  ++  F
Sbjct: 370 NLSAVPSKITRIKKPF 385


>gi|226307538|ref|YP_002767498.1| hypothetical protein RER_40510 [Rhodococcus erythropolis PR4]
 gi|226186655|dbj|BAH34759.1| hypothetical protein RER_40510 [Rhodococcus erythropolis PR4]
          Length = 505

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQ--ITDN 59
          KI    E +   I     I   + A+ +LI+NSLDA +S V       G       + DN
Sbjct: 13 KILAADESLAGAIGLHHTI---ATALADLIDNSLDASASHVLIRFVQDGTRIVSMMVIDN 69

Query: 60 GFGMTSEEIPMA 71
          G GM S+ I  A
Sbjct: 70 GSGMDSDTIDAA 81


>gi|300861451|ref|ZP_07107535.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|300848912|gb|EFK76665.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
          Length = 483

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTF 90
           ++NS+ A ++R++       + +  I DNG+GM+  E+  A++    S+   D       
Sbjct: 33  VDNSVSASATRIDINF-NNQQKYVSILDNGYGMSKIELLQAMK--YGSRSIYDLRTQDDL 89

Query: 91  GFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS 130
           G  G  L   S      LT++S      +GA   +   K  +
Sbjct: 90  GRFGLGLKMASFSQCRKLTVVSIKDGEYSGAVWDLDVVKKKN 131


>gi|315225745|ref|ZP_07867533.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
 gi|315119877|gb|EFT83009.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
           denticolens DSM 10105]
          Length = 701

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  ++ +E  I    G    ++ D+G G+  +E+P
Sbjct: 76  VYEIVDNSVDEALAGYATHIEVTILEDNG---IRVVDDGRGIPVDEVP 120


>gi|294786215|ref|ZP_06751469.1| DNA gyrase, B subunit [Parascardovia denticolens F0305]
 gi|294485048|gb|EFG32682.1| DNA gyrase, B subunit [Parascardovia denticolens F0305]
          Length = 704

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  ++ +E  I    G    ++ D+G G+  +E+P
Sbjct: 79  VYEIVDNSVDEALAGYATHIEVTILEDNG---IRVVDDGRGIPVDEVP 123


>gi|229815361|ref|ZP_04445696.1| hypothetical protein COLINT_02407 [Collinsella intestinalis DSM
           13280]
 gi|229809141|gb|EEP44908.1| hypothetical protein COLINT_02407 [Collinsella intestinalis DSM
           13280]
          Length = 362

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           I+     + E++ N+ DA +  +        G       D+G G+  +          TS
Sbjct: 47  IQHVEDIVVEMLRNARDAGARNIYLATSKEEGVRTLLFLDDGSGVPEDMRDRIFDARVTS 106

Query: 79  KISD---DFSNIHTFGFRGEALPSIGAVSHL-TLMSRPPQNNTGAQIAIS 124
           K+     D   +H  G RG AL SI   +    +++      +  ++ + 
Sbjct: 107 KLESMRMDKWGVH--G-RGMALFSIRQNTQTAEVVTSAQGGGSSFRVVVD 153


>gi|126668219|ref|ZP_01739180.1| DNA gyrase subunit B [Marinobacter sp. ELB17]
 gi|126627368|gb|EAZ98004.1| DNA gyrase subunit B [Marinobacter sp. ELB17]
          Length = 804

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 78/253 (30%), Gaps = 38/253 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           EL++NS+D   A   + +   I         + DNG G+  +          E+ M V  
Sbjct: 43  ELVDNSIDEALAGHCTEIGIRIHPD--ESVSVHDNGRGIPVDLHEGEGISAAEVIMTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
           H   K  D+   + + G  G       AL S+     LTL  R        ++       
Sbjct: 100 HAGGKFDDNTYKV-SGGLHGVGVSVVNALSSV-----LTLTIRRSG-----KVYEQTYNH 148

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
                     G+          IP+   F  + +    ++   +R +A     V    + 
Sbjct: 149 GVPAAPLHEVGSTDASGTKVHFIPSEATFT-NIKFHYEILAKRVRELAFLNSGVRIRLTD 207

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +S + ++      G     +  +       N V    +  E  ++    +   N     
Sbjct: 208 ERSGKEEL--FEYEGGLRAFVEHLNTNKTPINRVFYFTQQREDGIEVEVAMQW-NDAFQE 264

Query: 249 QFYVFINGRTVQD 261
             Y F N    +D
Sbjct: 265 NIYCFTNNIPQRD 277


>gi|51571927|ref|NP_001003994.1| MORC family CW-type zinc finger 2 [Danio rerio]
 gi|51329843|gb|AAH80267.1| MORC family CW-type zinc finger 2 [Danio rerio]
          Length = 1035

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++NS DA ++R++          GG     + D+G GM   E    +Q   +SK   +
Sbjct: 35  ELVDNSRDANATRIDIYTEKRPDLRGGFMLCFL-DDGTGMEPSEATHVIQFGKSSKRFPE 93

Query: 84  FSNIHTFG 91
            ++I  +G
Sbjct: 94  STHIGQYG 101


>gi|115524183|ref|YP_781094.1| hypothetical protein RPE_2170 [Rhodopseudomonas palustris BisA53]
 gi|115518130|gb|ABJ06114.1| hypothetical protein RPE_2170 [Rhodopseudomonas palustris BisA53]
          Length = 533

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 25  IAIKELIENSLDAESSRVETVIAG--GGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKIS 81
            AI EL++NSL+A + R++  +     G  F   + D+G GM +  +  A++   T++ +
Sbjct: 46  SAIAELVDNSLEASARRIDIHVRKSTAGDDFEVSVLDDGTGMDAGTLTEALRFGGTTRFN 105

Query: 82  DDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNN 116
               +    G  G  L   S+     + + +     +
Sbjct: 106 ----SRKGLGRFGMGLPNASLSQAKRVDVFTWQSGES 138


>gi|315182483|gb|ADT89396.1| C4-dicarboxylate transport sensor protein, hypothetical [Vibrio
           furnissii NCTC 11218]
          Length = 690

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA     + ++    +        ++ DNG G+T E++    +  
Sbjct: 579 QRLRQVLGNLVTNALDAMQEQPAPKLIISAVVDADTVLLRVRDNGCGITEEQLTTIFEPF 638

Query: 76  CTSK 79
            TSK
Sbjct: 639 QTSK 642


>gi|169836509|ref|ZP_02869697.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
          TM7a]
          Length = 660

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          IKE+ +NS+D   A  ++RV+  I   GG     +TD+G G+  +
Sbjct: 44 IKEIADNSIDEAIAGFATRVDVKILKDGG---ITVTDDGRGIPVD 85


>gi|167625475|ref|YP_001675769.1| putative DNA mismatch repair protein [Shewanella halifaxensis
          HAW-EB4]
 gi|167355497|gb|ABZ78110.1| putative DNA mismatch repair protein [Shewanella halifaxensis
          HAW-EB4]
          Length = 669

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEE 67
          I  P   I EL+ N  DA+++ V  +  G  G +   + DNG G+ +E+
Sbjct: 24 INTPEQVIFELVANGFDAKATTVNVITEGDIGTNQVVVLDNGVGINAED 72


>gi|152983647|ref|YP_001351625.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150958805|gb|ABR80830.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 586

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA + +    +   +   GG     + DNG G+ +E++        
Sbjct: 474 RLEQVLVNLLRNALDAVAGQERPWIRLAVQRVGGDWVLSVADNGGGIPAEDLGSVFDPFF 533

Query: 77  TSK 79
           T+K
Sbjct: 534 TTK 536


>gi|261366292|ref|ZP_05979175.1| two-component sensor histidine kinase [Subdoligranulum variabile
           DSM 15176]
 gi|282571890|gb|EFB77425.1| two-component sensor histidine kinase [Subdoligranulum variabile
           DSM 15176]
          Length = 540

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 30  LIENSLDA-ESS------RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+ DA  ++       ++  +    +     + DN  GM  E      +R  TSK
Sbjct: 437 LIENAFDAFGNTPSDTLHEIDVSVRESERGLILSVDDNACGMPEEVREHIFERGSTSK 494


>gi|157150767|ref|YP_001449944.1| hypothetical protein SGO_0641 [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|157075561|gb|ABV10244.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein protein [Streptococcus gordonii str. Challis
          substr. CH1]
          Length = 816

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 26 AIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          A+ ELI+NS DA+++     I        G+    I D+G GMT   I  A  +  TS
Sbjct: 29 ALLELIKNSSDADANYCNIEIDTLYQSEHGQGRIIIEDDGNGMTPYIIENAFLKIATS 86


>gi|300313370|ref|YP_003777462.1| DNA mismatch repair protein [Herbaspirillum seropedicae SmR1]
 gi|300076155|gb|ADJ65554.1| DNA mismatch repair protein [Herbaspirillum seropedicae SmR1]
          Length = 659

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 29 ELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRH 75
          EL+ N LDA + +V   I     GG     + DNG G+  + I     R 
Sbjct: 32 ELVWNGLDARAHQVSVHIEDTELGGTDVVTVLDNGDGINIDNISDNFGRF 81


>gi|152994000|ref|YP_001359721.1| hypothetical protein SUN_2430 [Sulfurovum sp. NBC37-1]
 gi|151425861|dbj|BAF73364.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 485

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 31  IENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD--FSNI 87
           ++NS+ A++S V   I+     S+  I DNG GM  E++     R+  S  S D      
Sbjct: 35  VDNSITAQASEVHIYISFQMQDSYIAIVDNGIGMNKEDL-----RNAMSLGSFDPLLERE 89

Query: 88  H-TFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISG 125
           H   G  G  L   S    S LT++S+  +        +  
Sbjct: 90  HKDLGRFGLGLKTASFSQSSKLTVVSKQEKEINARCWDLEH 130


>gi|126459555|ref|YP_001055833.1| DNA topoisomerase VI subunit B [Pyrobaculum calidifontis JCM
          11548]
 gi|126249276|gb|ABO08367.1| DNA topoisomerase VI, B subunit [Pyrobaculum calidifontis JCM
          11548]
          Length = 526

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 27 IKELIENSLDAESSR---------VETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR- 74
          I+EL ENSLDA  +          +   I    KS+  +   DNG G+  +EIP    R 
Sbjct: 35 IRELTENSLDA--TETYGILPTVYLRVKIEDEQKSWVSVYAEDNGIGIPGDEIPNVFGRV 92

Query: 75 HCTSKIS 81
            +SK  
Sbjct: 93 FYSSKYR 99


>gi|328951187|ref|YP_004368522.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451511|gb|AEB12412.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 477

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           L+ N++ A +  +       G+    Q+ D+G G+  E +P   +R  
Sbjct: 372 LVNNAIKAGARTITLRARSLGEKVVVQVVDDGPGIPPEHLPYLFERFY 419


>gi|86141747|ref|ZP_01060271.1| Histidine Kinase [Leeuwenhoekiella blandensis MED217]
 gi|85831310|gb|EAQ49766.1| Histidine Kinase [Leeuwenhoekiella blandensis MED217]
          Length = 742

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVET-----VIAGGGKSFFQI 56
          KIR  + ++I+ I + ++I     A+ EL++NS DA++++V+       I         I
Sbjct: 8  KIRP-AARLIHTIGS-DLIGDSYAALVELVKNSYDADATKVDIVFKYTEIDNEQALIISI 65

Query: 57 TDNGFGMTSE 66
           D+G GM  +
Sbjct: 66 KDDGHGMDFD 75


>gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor]
 gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor]
          Length = 758

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 24/97 (24%)

Query: 4   RKLSEKIINQIAAGE---IIERPS--------------IAIKELIENSLDAESSRVETVI 46
           R L+  +  +IA+     ++  PS               AI ELI+NS DA +SR+   I
Sbjct: 242 RVLNPVVKMRIASPTKNFVVADPSYLRTLSQTHASWMFGAIAELIDNSRDAGASRLSISI 301

Query: 47  A-----GGGKSF--FQITDNGFGMTSEEIPMAVQRHC 76
                    K      + D+G GMT  ++   +    
Sbjct: 302 EHLFSKKAQKKIPVLSVIDDGHGMTYPDMMRMISFGH 338


>gi|218889614|ref|YP_002438478.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218769837|emb|CAW25597.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 434

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 17  GEII-ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           G +I  RP      +  L++N+L  A ++R+E      G +  Q+ DNG G+ +EE+   
Sbjct: 321 GAVIDTRPHALRRVLVNLVDNALKFAGAARLEVERRTDGGTRIQVLDNGPGIPAEELDEV 380

Query: 72  VQRHC 76
           ++   
Sbjct: 381 LKPFY 385


>gi|254236990|ref|ZP_04930313.1| hypothetical protein PACG_03015 [Pseudomonas aeruginosa C3719]
 gi|126168921|gb|EAZ54432.1| hypothetical protein PACG_03015 [Pseudomonas aeruginosa C3719]
          Length = 434

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 17  GEII-ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           G +I  RP      +  L++N+L  A ++R+E      G +  Q+ DNG G+ +EE+   
Sbjct: 321 GAVIDTRPHALRRVLVNLVDNALKFAGAARLEVERRTDGGTRIQVLDNGPGIPAEELDEV 380

Query: 72  VQRHC 76
           ++   
Sbjct: 381 LKPFY 385


>gi|15599297|ref|NP_252791.1| BfmS [Pseudomonas aeruginosa PAO1]
 gi|107103619|ref|ZP_01367537.1| hypothetical protein PaerPA_01004689 [Pseudomonas aeruginosa PACS2]
 gi|254242787|ref|ZP_04936109.1| hypothetical protein PA2G_03553 [Pseudomonas aeruginosa 2192]
 gi|9950303|gb|AAG07489.1|AE004826_7 BfmS [Pseudomonas aeruginosa PAO1]
 gi|126196165|gb|EAZ60228.1| hypothetical protein PA2G_03553 [Pseudomonas aeruginosa 2192]
          Length = 434

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 17  GEII-ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           G +I  RP      +  L++N+L  A ++R+E      G +  Q+ DNG G+ +EE+   
Sbjct: 321 GAVIDTRPHALRRVLVNLVDNALKFAGAARLEVERRTDGGTRIQVLDNGPGIPAEELDEV 380

Query: 72  VQRHC 76
           ++   
Sbjct: 381 LKPFY 385


>gi|146276766|ref|YP_001166925.1| integral membrane sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555007|gb|ABP69620.1| integral membrane sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 604

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA     S +++ V+A G  +   + DNG G+  E++    +   T
Sbjct: 494 RLEQVIINLLRNALDATKGVASPQIDIVLAAGETATLTVRDNGQGI--EDLDNLFEPFYT 551

Query: 78  SK 79
           +K
Sbjct: 552 TK 553


>gi|313900991|ref|ZP_07834481.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
 gi|312954411|gb|EFR36089.1| DNA gyrase, B subunit [Clostridium sp. HGF2]
          Length = 647

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ +E  I        ++ DNG GM 
Sbjct: 56 EIVDNSIDEALAGFATDIEITIEKNNI--IRVEDNGRGMP 93


>gi|261368839|ref|ZP_05981722.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176]
 gi|282569109|gb|EFB74644.1| DNA gyrase, B subunit [Subdoligranulum variabile DSM 15176]
          Length = 662

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I  G     Q++DNG G+  +
Sbjct: 53 VYEIVDNSIDEALAGYCTHIEVTIKPGNI--IQVSDNGRGIPVD 94


>gi|261819991|ref|YP_003258097.1| hypothetical protein Pecwa_0666 [Pectobacterium wasabiae WPP163]
 gi|261604004|gb|ACX86490.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 795

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 16/93 (17%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        A+ EL+ NS+DA++S V   ++  G +    TD+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SLGKALIELLMNSVDAQASSVLLTVSQEGFTC---TDDGHG 59

Query: 63 M-TSEEIPMAVQRHCTSKISDDFSNIHTFG-FR 93
            + +++     R  T  I  D     T+G FR
Sbjct: 60 FASRDDVVNYFGRFGTPHIEGD----ATYGRFR 88


>gi|323704272|ref|ZP_08115851.1| histidine kinase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536338|gb|EGB26110.1| histidine kinase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 181

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 28 KEL-------IENSLDAESSRVETVIA-GGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCT 77
          KEL        +NS+ A +  +   +     K F +  I D+G GM  E +  A     T
Sbjct: 2  KELSLYILDIAQNSIKAGAKNISIKLEIDHKKDFMRLSIEDDGCGMDEELLKKAFDPFTT 61


>gi|302340082|ref|YP_003805288.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Spirochaeta smaragdinae DSM 11293]
 gi|301637267|gb|ADK82694.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Spirochaeta smaragdinae DSM 11293]
          Length = 527

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLD----AESSRVETVIAGGGKSF-FQI 56
            I  L E +         +E     I  LIEN+LD    A++ +++  +     +    +
Sbjct: 405 SIHTLPEGMR--------VESLVSVIGNLIENALDALIPAKNGKIDVRLIEDESNLEITV 456

Query: 57  TDNGFGMTS 65
           +DNG G+  
Sbjct: 457 SDNGPGIRP 465


>gi|194380672|dbj|BAG58489.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 31/278 (11%)

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQGYT 237
           P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G+ 
Sbjct: 8   PDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFL 64

Query: 238 GIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLE 289
                     +     + ++FIN R V  K IL  IR  Y           YPV  L ++
Sbjct: 65  PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 124

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLS 338
           +    VDVN+ P KS +  +N   +   +   +               NK  +S + ++ 
Sbjct: 125 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 184

Query: 339 KKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSE 391
            K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y  
Sbjct: 185 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 244

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
            +  +   +          +  + ++  SQT       
Sbjct: 245 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 282



 Score = 37.0 bits (84), Expect = 9.6,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 102/301 (33%), Gaps = 29/301 (9%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R  + ++  I Q  Q ++           +  +    H+     ++ PK    L +  EK
Sbjct: 454 RYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQK-HKLKTSLSNQPKLDELLQSQIEK 512

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +  + V+  E     L         +  +  +   +++
Sbjct: 513 RRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLR--FPDAWLMTSKTEVML 570

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 571 LNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGST 630

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N + I  +   L    +  L ++I++ I++ +    
Sbjct: 631 YLSDPRLTANGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNRNAKEV 689

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKL 583
            + R   ++  +   A   S +    +   ++  ++  M+        +C HGRP F  L
Sbjct: 690 YECRPRKVIGYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHL 749

Query: 584 K 584
            
Sbjct: 750 T 750


>gi|462227|sp|P34031|GYRB_SPICI RecName: Full=DNA gyrase subunit B
 gi|49348|emb|CAA79523.1| DNA gyrase subunit B [Spiroplasma citri]
 gi|745458|prf||2016285C DNA gyrase:SUBUNIT=B
          Length = 640

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 97/318 (30%), Gaps = 34/318 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQ-RH 75
           E+++NS+D   A  +++++ ++         + DNG G+  E         +       H
Sbjct: 41  EIVDNSIDEVLANFANKIKIILNKD--ESITVIDNGRGIPIEIHPKTKVSTLETVFTILH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K   +   I + G  G     + A+S  L +  R        +    G+ ++ ++ V
Sbjct: 99  AGGKFDSNTYKI-SGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEV 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST----IK 190
                T   V      +P    F ++     + I + I+++      +  +        +
Sbjct: 158 GSTSETGTTVTF----LPDEKIFKETTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDE 213

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                  F +   ++   +++ IG    +       + N +   G      ++    +  
Sbjct: 214 EKTVLYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGLQYNDNYSENIFSFC 273

Query: 251 Y---------VFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHP 301
                          R    + I +  +    +             ++     +    HP
Sbjct: 274 NNINTHEGGTHEEGARLAIVREINNYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHP 333

Query: 302 AKSYIRFRNPTIIRNFII 319
              Y    N  ++ + + 
Sbjct: 334 EPQYEGQTNQKLLNSEVK 351


>gi|23978272|dbj|BAC21122.1| DNA gyrase B subunit [Pleurocapsa sp. PCC 7314]
          Length = 393

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 79/246 (32%), Gaps = 23/246 (9%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ- 73
           + E+++NS+D   A   + +E  I   G     +TD+G G+            +   +  
Sbjct: 10  VYEVVDNSIDEALAGFCTHIEVDINPDG--SITVTDDGRGIPTGIHHKTGKSALETVMTV 67

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS---GEKISS 130
            H   K  D    + + G  G  +  + A+S L  ++         Q         K+++
Sbjct: 68  LHAGGKFGDGGYKV-SGGLHGVGVSVVNALSKLVEVTVWRDKKIHLQRYERGKPQGKLAT 126

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                    T   V      +P    F ++   E  ++   ++ +A     +  TF+  +
Sbjct: 127 DPNKDDPKRTGTSV----HFVPDETIFTETTVFEYEILAKRLKELAYLNAGIKITFTDNR 182

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           S     +     G   E +  +  E    +   +     +  +     +       ++  
Sbjct: 183 SEEIHQDIFCYEGGIKEYVEYMTPEKDPLHQDIIYVNKEKKGVTVEVALQWCIDSYSDNL 242

Query: 251 YVFING 256
             F N 
Sbjct: 243 LGFANN 248


>gi|304409963|ref|ZP_07391582.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS183]
 gi|307302324|ref|ZP_07582082.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica BA175]
 gi|304351372|gb|EFM15771.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS183]
 gi|306914362|gb|EFN44783.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica BA175]
          Length = 360

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++ +       G+     + DNG G+ +      ++   T+K
Sbjct: 249 LSSAINNLVMNSIEAGATEIRIQAKEEGEQLLLNVIDNGKGLDANMQQKVLEPFFTTK 306


>gi|291531292|emb|CBK96877.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
          [Eubacterium siraeum 70/3]
          Length = 686

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 5  KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
          KL  +++ Q+ +    + P   I EL+ NS DA+++ V   I     +   + D+G GMT
Sbjct: 12 KLDRRVLKQLGSQLYGDTP-SVIAELVANSYDADANNVWITIDTVNNNVI-VEDDGKGMT 69

Query: 65 SEEIPMAVQ 73
          + +I  +  
Sbjct: 70 AGDINESFL 78


>gi|260893225|ref|YP_003239322.1| ATP-binding region ATPase domain protein [Ammonifex degensii KC4]
 gi|260865366|gb|ACX52472.1| ATP-binding region ATPase domain protein [Ammonifex degensii KC4]
          Length = 882

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 21 ERPSIAI-KELIENSLDAE-----SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ER +  + KEL++N+LDA      +  V   +    G  +  + DNG G+ SE
Sbjct: 33 ERFACVVLKELVDNALDAAEAAGVAPEVSIDVAREDGIYWVTVADNGPGIASE 85


>gi|325283718|ref|YP_004256259.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
 gi|324315527|gb|ADY26642.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
          Length = 530

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI N+L A ++R+E        G+    ++DNG G+ ++++     R  
Sbjct: 412 DRLRQVLNNLISNALKAGATRIELGSTQPEPGRVRLSVSDNGPGIAADQLEKLFDRFY 469


>gi|221045818|dbj|BAH14586.1| unnamed protein product [Homo sapiens]
          Length = 756

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 100/278 (35%), Gaps = 31/278 (11%)

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQGYT 237
           P +   F   K+  ++   +S   +    +  V+G   +NN    + + + ++I L G+ 
Sbjct: 8   PDLRIVFVHNKAVIWQ---KSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFL 64

Query: 238 GIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLE 289
                     +     + ++FIN R V  K IL  IR  Y           YPV  L ++
Sbjct: 65  PKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKID 124

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLS 338
           +    VDVN+ P KS +  +N   +   +   +               NK  +S + ++ 
Sbjct: 125 VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVL 184

Query: 339 KKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSE 391
            K   +   F++  +   +     TS+   Q  +   E+  +T+D L       D  Y  
Sbjct: 185 SKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGH 244

Query: 392 DNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
            +  +   +          +  + ++  SQT       
Sbjct: 245 CSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 282



 Score = 37.7 bits (86), Expect = 5.2,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 29/301 (9%)

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEK 368
           R  + ++  I Q  Q ++           +  +    H+     ++ PK    L +  EK
Sbjct: 454 RYNSQMKRAIEQESQMSLKDGRKKIKPTSAWNLAQK-HKLKTSLSNQPKLDELLQSQIEK 512

Query: 369 LFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVI 428
              Q  ++        +     +  + V+  E     L         +  +  +   +++
Sbjct: 513 RRSQNIKMVQIPFSMKNLKINFKKQNKVDLEEKDEPCLIHNLR--FPDAWLMTSKTEVML 570

Query: 429 VDQHAAHERLIFEKMRQDFN--STKITSQTLLTPEIIDLLEGECALIMEHDED------- 479
           ++ +   E L+F+++ ++    +  +    +LT  + +       L     +D       
Sbjct: 571 LNPYRVEEALLFKRLLENHKLPAEPLEKPIMLTESLFNGSHYLDVLYKMTADDQRYSGST 630

Query: 480 ------LHRLGIKAE-----RFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYT 528
                 L   G K +         N + I  +   L    +  L ++I++ I++ +    
Sbjct: 631 YLSDPRLTANGFKIKLIPGVSITENYLEIEGMANCLPFYGVADL-KEILNAILNRNAKEV 689

Query: 529 LQDRIENILATM---ACYGSIRSGRKMQSIEMNRLLREMEK--NPNSSQCNHGRPTFIKL 583
            + R   +++ +   A   S +    +   ++  ++  M+        +C HGRP F  L
Sbjct: 690 YECRPRKVISYLEGEAVRLSRQLPMYLSKEDIQDIIYRMKHQFGNEIKECVHGRPFFHHL 749

Query: 584 K 584
            
Sbjct: 750 T 750


>gi|256423226|ref|YP_003123879.1| hypothetical protein Cpin_4222 [Chitinophaga pinensis DSM 2588]
 gi|256038134|gb|ACU61678.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 640

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 16 AGEIIER-PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP----- 69
          AG  I   P +AI ELI N+ DA ++ V+       +  F+ITDNG GMT  E       
Sbjct: 18 AGSSIFSEPKVAIIELIANAWDAGATEVKIKWPEKHEDPFEITDNGHGMTETEFETRFMV 77

Query: 70 MAVQR 74
          +A +R
Sbjct: 78 LAYER 82


>gi|209543231|ref|YP_002275460.1| hypothetical protein Gdia_1062 [Gluconacetobacter diazotrophicus
          PAl 5]
 gi|209530908|gb|ACI50845.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
          PAl 5]
          Length = 644

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 16 AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIP 69
          AG II   ++AI EL+ N+ DA ++RVE       K+  F I+DNG GMTSE+  
Sbjct: 21 AGPIISDTNVAIVELVANAWDAYATRVEITWPDRSKNQLFSISDNGKGMTSEQFE 75


>gi|83588881|ref|YP_428890.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
 gi|83571795|gb|ABC18347.1| DNA gyrase, B subunit [Moorella thermoacetica ATCC 39073]
          Length = 634

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           EL++NS+D   A    R+E  I   G     + DNG G+  +          E+ + +  
Sbjct: 44  ELVDNSIDEALAGFCDRIEVTIHENG--SLTVADNGRGIPVDIHEKTGLPAVEVALTIL- 100

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K   +   +   G  G  L  + A+S  L +  +        Q    G+K+S ++ 
Sbjct: 101 HAGGKFGGNGYKVAG-GLHGVGLSVVNALSEWLEIKVKRNG-KIYHQEYRRGQKVSELKV 158

Query: 134 VAMNPGTIVEVR 145
           +    GT   V 
Sbjct: 159 IGKTKGTGTSVT 170


>gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 590

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKI 80
            ++ L++N++    D    RV   +   G     +I DNG G+   ++    +R      
Sbjct: 484 VVRNLLDNAVKYVDDRN-GRVRISVFRTGMDVRMEIEDNGIGIAPADLDRIFERFY---- 538

Query: 81  SDDFSNIHTFGFRGEALP-----SIGAVSHLTLMSR 111
             D +   T G  G  L       IG   H+ + SR
Sbjct: 539 RVDKARSRTLGGTGLGLAIVKHIVIGHKGHIEVRSR 574


>gi|324502961|gb|ADY41294.1| MORC family CW-type zinc finger protein 2A [Ascaris suum]
          Length = 894

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
             AI EL++NS DA++  +      G  SF    D+G GM  +E+   +    ++K   
Sbjct: 29 LFGAIAELVDNSRDAQADTLRIDYDNGQLSFL---DDGCGMDKKEVESVISFGYSAK-RM 84

Query: 83 DFSNIHTFG 91
          D   +  +G
Sbjct: 85 DPEMVGQYG 93


>gi|268610497|ref|ZP_06144224.1| DNA gyrase subunit B [Ruminococcus flavefaciens FD-1]
          Length = 643

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +   I  G     +++DNG G+ 
Sbjct: 43 VYEIVDNSIDEALAGYCTEINVEILEG--DVIRVSDNGRGIP 82


>gi|260769510|ref|ZP_05878443.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
 gi|260614848|gb|EEX40034.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
          Length = 690

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA     + ++    +        ++ DNG G+  E++    +  
Sbjct: 579 QRLRQVLGNLVTNALDAMQEQPAPKLIISAVVDADTVLLRVRDNGCGIAEEQLTTIFEPF 638

Query: 76  CTSK 79
            TSK
Sbjct: 639 QTSK 642


>gi|12275201|emb|CAC22276.1| putative heat shock protein [Listeria monocytogenes]
          Length = 181

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 29  ELIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSE-----EIPMAVQRHCTSKIS 81
           ELI N+ DA++  V     I    ++   + D+G GM+ E           +   T+ I+
Sbjct: 32  ELIANAYDADAKNVYVIDRIDE--ENKLIVEDDGSGMSYENKDVKNFLSVAKESRTNAIN 89

Query: 82  D--DFSNIHTFGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGA--------QIAISGEKIS 129
                +N    G +G   L S+ +VS  + + +      +G         +   +  + +
Sbjct: 90  SYTKLNNRRKMGRKGVGKLASL-SVSENVNIKTIKDGEKSGFVLSRKVINKKLEAINEDT 148

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
                  N GT +E+ +  + +P  L+ + + 
Sbjct: 149 ISFIKIKNHGTAIEMTNPTYKLPVHLSTMANN 180


>gi|254039142|ref|ZP_04873192.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300925888|ref|ZP_07141726.1| conserved domain protein [Escherichia coli MS 182-1]
 gi|226838578|gb|EEH70607.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300418040|gb|EFK01351.1| conserved domain protein [Escherichia coli MS 182-1]
          Length = 652

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 19/181 (10%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------H 75
           P+  + E+I N+ DA++  VE  +    K    I D+G GM+ ++I     +       H
Sbjct: 25  PA-VLTEIISNAWDADAQNVEITL-DVEKGEVIIKDDGHGMSKDDIINKFLKVGYARREH 82

Query: 76  CTSKISDDFSNIHTFGFRGE---ALPSIGAVSHLTLMS-RPPQNNTGAQIAISGEKISSV 131
             +K   D       G +G    A+ S+     + + S +  +     ++ +   + S  
Sbjct: 83  GRAK--SDHLKRQVMGRKGIGKLAMFSLAN--KIQVYSYKKGEQPQAFEVDVKDLQQSIK 138

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKS--EQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                   ++    +L +    +L  LK   ++ +T L   + RR +I  P  +FT    
Sbjct: 139 ESKNYIADSLEIPENLAYGTTIKLFELKKAIDRTQTYLRKRIARRFSIIGPNHNFTVKIN 198

Query: 190 K 190
            
Sbjct: 199 G 199


>gi|217967929|ref|YP_002353435.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337028|gb|ACK42821.1| DNA gyrase, B subunit [Dictyoglomus turgidum DSM 6724]
          Length = 635

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 82/223 (36%), Gaps = 30/223 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR---------H 75
           EL++NS+D   A   + +   +   G     + DNG G+  +  P A +          H
Sbjct: 45  ELVDNSIDEVMAGYCNYILVELKKDG--SVVVADNGRGIPVDIHPQAKKPALEVVLTTLH 102

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVR 132
              K S+    I + G  G  L  + A+S    + +M          Q    G+ +  + 
Sbjct: 103 AGGKFSNSIYKI-SGGLHGVGLSVVNALSSKLEVEVM---RDGKIFYQGYEKGKPVMPLT 158

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
                  T  ++R  F+         ++ + + +++ + +R +A   P V+         
Sbjct: 159 VRGETDETGTKIR--FY---PDSEIFETTKFDYDIVANRLRELAFLNPNVTIELR--DER 211

Query: 193 RYKMNFQSTNGNFPERISQV-IGEDFINNAVELNEKSNEITLQ 234
             K N     G   E I  +  G++ ++  + +  +   + ++
Sbjct: 212 TGKSNVFKYEGGLLEFIEYLSKGKEILHEPIYMRREEENLIVE 254


>gi|111021792|ref|YP_704764.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
 gi|110821322|gb|ABG96606.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
          Length = 539

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 20/84 (23%)

Query: 30  LIENSLDA--ESSR-------VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA   ++        VE  +         ++ D+G G+ ++E+  AV R  ++K
Sbjct: 437 LVDNAIDAARGATESPGEDAWVEVTVRQEDSMMVVRVADSGPGIPADELDKAVTRGYSTK 496

Query: 80  ISDDFSNIHTFGFRGEALPSIGAV 103
                      G RG  L  +  V
Sbjct: 497 ----------SGQRGLGLALVAQV 510


>gi|168211329|ref|ZP_02636954.1| hypothetical protein AC1_2196 [Clostridium perfringens B str. ATCC
           3626]
 gi|170710622|gb|EDT22804.1| hypothetical protein AC1_2196 [Clostridium perfringens B str. ATCC
           3626]
          Length = 679

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 85/258 (32%), Gaps = 23/258 (8%)

Query: 33  NSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS-KISDD-FSNI 87
           N  DAE+++++        GG     I DNG G+   E+    +    S KI+++  SNI
Sbjct: 31  NGFDAEATKIDIKFTCNELGGIDSIIIKDNGRGINFNELEDTFKCVLDSKKINNNKMSNI 90

Query: 88  HTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDL 147
           H  G +G+           + +S   +       +           +  +  T  E  DL
Sbjct: 91  H--GSKGK--------GRFSFISFGEKATWETVYSKGSSNEKFKIEILKSTATEFEAFDL 140

Query: 148 FFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF--STIKSNRYKMNFQSTNGNF 205
             T       +    +      ++  ++   Y    F +     K N Y++     + N+
Sbjct: 141 METEEKTGTIVTISGINDIKEVEINSKIFKDYFNDKFAWFLYLNKDNNYEITINGKSLNY 200

Query: 206 PERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG------NANQFYVFINGRTV 259
            E I + + ++      +   K N I   G                 A +     N + +
Sbjct: 201 LEFIDESLSKEVDFKIDDDLFKVNFIKWIGKISEKYHAYFIDEKFNQAYKKTTSFNNKNL 260

Query: 260 QDKFILSTIRTAYAETIP 277
           +    +      + + IP
Sbjct: 261 EFPHSIYVRSNYFNDFIP 278


>gi|146296866|ref|YP_001180637.1| histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410442|gb|ABP67446.1| histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 186

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 30 LIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSE 66
          L++NS++A ++ V+  +            I DNG G+  E
Sbjct: 11 LVQNSIEAGATFVKIEVVEDLENDLFLISIEDNGRGIPKE 50


>gi|152982389|ref|YP_001355015.1| two-component sensor histidine kinase [Janthinobacterium sp.
           Marseille]
 gi|151282466|gb|ABR90876.1| two-component sensor histidine kinase [Janthinobacterium sp.
           Marseille]
          Length = 434

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 19  IIERPSI---AIKELIENSLDAE-SSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAV 72
           II RP+     +  LI+N+L  + S++VE  ++ G  GK+   + DNG G+  E++    
Sbjct: 326 IITRPNALRRVLINLIDNAL--KFSTQVEVSVSAGPEGKTTILVLDNGPGIPEEDLETVF 383

Query: 73  QRHC 76
           Q   
Sbjct: 384 QPFY 387


>gi|94971644|ref|YP_593692.1| hypothetical protein Acid345_4618 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553694|gb|ABF43618.1| hypothetical protein Acid345_4618 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 509

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 24/133 (18%)

Query: 16  AGEIIERP-------SIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEE 67
           AG +IE           A+ ++++NS+DA++  +   +     +    I D+G GM+   
Sbjct: 11  AGRLIESLRHLGYGNYEAVADIVDNSIDADAQNINIRVQTKSNQIIISIADDGRGMSKSI 70

Query: 68  IPMAVQ------RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQI 121
           +  A++      R+  S +      + T         S+     L ++SR   ++     
Sbjct: 71  LDQAMRLGSLTDRNAESDLGKFGMGLVT--------ASLSMAKKLHVVSR--GDDGCWSS 120

Query: 122 AISGEKISSVRPV 134
           A   ++I +    
Sbjct: 121 AWDVDEIVAQNAF 133


>gi|308175643|ref|YP_003922348.1| ATP-binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|307608507|emb|CBI44878.1| ATP-binding protein [Bacillus amyloliquefaciens DSM 7]
 gi|328555624|gb|AEB26116.1| ATP-binding protein [Bacillus amyloliquefaciens TA208]
 gi|328914002|gb|AEB65598.1| ATP-binding protein [Bacillus amyloliquefaciens LL3]
          Length = 485

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 84/269 (31%), Gaps = 32/269 (11%)

Query: 31  IENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++N++DA++S++         + + +I DNG GM+ EEI  A+      K      + + 
Sbjct: 32  VDNAIDAQASKITLHFEYDKLNGYIKIEDNGNGMSEEEIQTAMNIGA--KDPRTKRSPNE 89

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV---------------R 132
            G  G  L   S      L+++++           +      +                 
Sbjct: 90  LGRFGMGLKTASFSLGKRLSVITKKDGVYHERCWDLDYVSECNEWNLLTSIPTPVKEVAG 149

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            +  + GT++ +  L   +  +    K+   +T  I          + +  F      + 
Sbjct: 150 EINGSSGTVIIIDKLDRYMRNKKIQRKTFFSKTAQIQK--------HLEFVFHDLIDNN- 200

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           +  ++         +                     +++ ++    +P  ++    +F  
Sbjct: 201 KIIISINDVELTPWDPFMTEHPSIIEGEETLWKLDGHKMKVKYTI-LPHASKLTRTEFKK 259

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRY 281
               R  +D   L   R      +  G +
Sbjct: 260 AGGERGWRDHQGLYIYRE--NRLLHYGDW 286


>gi|213692028|ref|YP_002322614.1| hypothetical protein Blon_1146 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213523489|gb|ACJ52236.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320458139|dbj|BAJ68760.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 684

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 24 SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          +  + E + N+ DA+++RVE        +   I DNG GMT  E+
Sbjct: 26 AAVLSEFVANAWDADATRVEIQFDPN--NSISILDNGCGMTDGEL 68


>gi|317483227|ref|ZP_07942222.1| hypothetical protein HMPREF0177_01617 [Bifidobacterium sp.
          12_1_47BFAA]
 gi|316915296|gb|EFV36723.1| hypothetical protein HMPREF0177_01617 [Bifidobacterium sp.
          12_1_47BFAA]
          Length = 684

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 24 SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          +  + E + N+ DA+++RVE        +   I DNG GMT  E+
Sbjct: 26 AAVLSEFVANAWDADATRVEIQFDPN--NSISILDNGCGMTDGEL 68


>gi|71894602|ref|YP_278710.1| topoisomerase IV subunit B [Mycoplasma synoviae 53]
 gi|71851390|gb|AAZ43999.1| topoisomerase IV subunit B [Mycoplasma synoviae 53]
          Length = 641

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 37/217 (17%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----EIPMA 71
           I      + E+++NS+D   A  +S +   +         + DNG G+  E    E   A
Sbjct: 33  IHGLHHLVAEIVDNSIDEALAGYASEITVTLHSD--LSVSVFDNGRGIPVEKVKGEFKTA 90

Query: 72  V-----QRHCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLT-LMSRPPQNNTGA 119
           V     + H   K S D     + G  G       AL S      L  ++SR  ++   A
Sbjct: 91  VELVFTELHAGGKFSSDSYK-TSGGLHGVGSSVVNALSS-----KLEVIVSRNDKSYKTA 144

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
            I  S  + +   P+    GT+V+             F K  ++  + I + ++  +   
Sbjct: 145 FIQDSIVEKTHEIPLQFKRGTLVKFW-------PDYKFFKDARLNFSTIAERLKESSFLV 197

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
             +  T      N  ++    +     E +  + G  
Sbjct: 198 SNLKITIIDEIKNHKEV--YQSQKGLEEFLDFINGSK 232


>gi|71908188|ref|YP_285775.1| hypothetical protein Daro_2572 [Dechloromonas aromatica RCB]
 gi|71847809|gb|AAZ47305.1| hypothetical protein Daro_2572 [Dechloromonas aromatica RCB]
          Length = 537

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 21/129 (16%)

Query: 27  IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH------CTSKI 80
           + EL++N+  A ++ +E      G     + D+G G+  ++    +  H       TS  
Sbjct: 27  VSELLQNARRAGATHIEVDY-DAGTRILVVQDDGGGL--DDFQKLLSFHESGWDDATS-- 81

Query: 81  SDDFSNIHTFGFRGEALPSIG--AVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
           ++        GF      S    A +   + SR  + +     A++   I          
Sbjct: 82  AE--ERPFGVGF------SKCLYAATRCIVASRHQRVDIDTAAALAKAAIDVEPMAEAVT 133

Query: 139 GTIVEVRDL 147
           GT +E+  +
Sbjct: 134 GTWIELHGV 142


>gi|84500978|ref|ZP_00999213.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola batsensis HTCC2597]
 gi|84391045|gb|EAQ03463.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola batsensis HTCC2597]
          Length = 591

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N++DA SS     ++ +++ G  +   + DNG G+  E +    +   T
Sbjct: 479 RLEQVLINLMRNAIDATSSVENPAIDVILSVGETATITVRDNGTGI--ENLEDLFEPFYT 536

Query: 78  SK 79
           +K
Sbjct: 537 TK 538


>gi|147860182|emb|CAN78719.1| hypothetical protein VITISV_031696 [Vitis vinifera]
          Length = 507

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 32/209 (15%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   I      G     I DNG GM  E++   +    +  SKI
Sbjct: 52  ELLDNSLDEICNGATYVNVDILQNKRDGNKMLLIEDNGGGMDPEKMRQCMSLGYSEKSKI 111

Query: 81  SDDF-------SNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           ++             +F F             L L+S   + +           +  +  
Sbjct: 112 ANTIGQYKSPVEKDGSFLF------------DLQLISLICEFDNQLIYKEHWIDLMDMFN 159

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR-----RMAIAYPKVSFTFST 188
                G  + + +L+     +L        +   I  V R     +MA  +P      + 
Sbjct: 160 FLKENGMRIIIYNLWEDDSGQLELDFDTDQQDIHIRGVNRDEKNIQMAKQFPNSRHFLTY 219

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDF 217
             S R      +  G+    +  V+  DF
Sbjct: 220 RHSLRPFWRLWNAAGSDGRGVIGVLEADF 248


>gi|295402119|ref|ZP_06812078.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109156|ref|YP_003987472.1| DNA gyrase subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294975802|gb|EFG51421.1| DNA gyrase, B subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214257|gb|ADP72861.1| DNA gyrase, B subunit [Geobacillus sp. Y4.1MC1]
          Length = 640

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     +TDNG G+  +
Sbjct: 47 EIVDNSIDEALAGYCTEINVTIEKDG--SITVTDNGRGIPVD 86


>gi|160886780|ref|ZP_02067783.1| hypothetical protein BACOVA_04793 [Bacteroides ovatus ATCC 8483]
 gi|156107191|gb|EDO08936.1| hypothetical protein BACOVA_04793 [Bacteroides ovatus ATCC 8483]
          Length = 767

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 8/72 (11%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSF-------FQITDNGFGMTSEEIPMAVQRHCT- 77
           A+ ELI+N+ DA++  V+    G  +S          I DNG GMTSE I  +     T 
Sbjct: 35  AVIELIKNAYDADADWVKVSFEGFTESLNITSESRIIIEDNGCGMTSERIEKSWMSPATP 94

Query: 78  SKISDDFSNIHT 89
           +K S D S   T
Sbjct: 95  NKFSKDGSERRT 106


>gi|304383752|ref|ZP_07366211.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335276|gb|EFM01547.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 627

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 85/230 (36%), Gaps = 23/230 (10%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE--EIPMAVQRHCTS 78
                 + EL+ N+ DA++  V   I+   K   +I D+G GM+ +  E+   +     S
Sbjct: 26  TNLYYVLAELVANAYDADAHNVYI-ISN--KDDIRIEDDGHGMSYQNGEVKKFLNVAGVS 82

Query: 79  KISDDFSNIHT-----FGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGAQIAISGE----- 126
           ++ ++ S   +      G +G   L ++ +VS  + +M+      +G  ++         
Sbjct: 83  RVKEEESMTRSGERRKMGRKGVGKLAAL-SVSESVDVMTISDNEKSGFVLSRRPIDGNKL 141

Query: 127 ----KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIAYPK 181
                           GT + +R+  + +   ++ +K +      L+ D  +   I   +
Sbjct: 142 RPIADDDIKFVYIQEHGTAIVMRNPQYRLNKSMDSVKRNLLKIFPLVNDNFKIHIIRGNE 201

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
                +  ++   ++    + G+    +++ I   +     EL E     
Sbjct: 202 TVTIDTFDENIAKELCAFISLGDDFSDLAKNIPNQYPAKRTELVEHREPY 251


>gi|209521258|ref|ZP_03269978.1| histidine kinase [Burkholderia sp. H160]
 gi|209498300|gb|EDZ98435.1| histidine kinase [Burkholderia sp. H160]
          Length = 679

 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+   +  G  +    + DNG G+  + +P   +   
Sbjct: 559 RLEQVLINLLGNALDATAGMSLPRITIEVEAGAANLSIVVGDNGPGIPDDVLPHLFEPFF 618

Query: 77  TSK 79
           T+K
Sbjct: 619 TTK 621


>gi|157373918|ref|YP_001472518.1| DNA topoisomerase IV subunit B [Shewanella sediminis HAW-EB3]
 gi|157316292|gb|ABV35390.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 628

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 76/211 (36%), Gaps = 39/211 (18%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +++++ ++     +  ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIDVILHKD--NSLEVIDDGRGMPVDIHPEEGIPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQ--NNTGA 119
            + + + H   K S+D     + G  G       AL S      + +  R      +   
Sbjct: 88  ELILTKLHAGGKFSNDNYQ-FSGGLHGVGISVVNALSS-----RVEITVRRNGIVYDMAF 141

Query: 120 QIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +     E +         N GT V     F+  P+  +F        + +  +++  A+ 
Sbjct: 142 EHGHKVEDLVETGTCGRRNSGTRVH----FWPTPSYFDFE---NFSISKLVYLLKAKAVL 194

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
            P +   F        ++          + +
Sbjct: 195 CPGLKIKFVN--KQTDEVLEWYYESGLTDYL 223


>gi|313114392|ref|ZP_07799921.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623286|gb|EFQ06712.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 345

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 26  AIKELIENSLD---AESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           A+  L++N+LD   +    ++             ++ DNG G+  E++    +R   S+ 
Sbjct: 241 AVDNLVKNALDHTKSG-DTIQVE-WNALPSMVQIKVRDNGSGIHPEDLYHIFKRFYRSRF 298

Query: 81  SDDFSNIHTFG 91
           S D   I   G
Sbjct: 299 SQDTQGIG-LG 308


>gi|295102501|emb|CBL00046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 345

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 26  AIKELIENSLD---AESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           A+  L++N+LD   +    ++             ++ DNG G+  E++    +R   S+ 
Sbjct: 241 AVDNLVKNALDHTKSG-DTIQVE-WNALPSMVQIKVRDNGSGIHPEDLYHIFKRFYRSRF 298

Query: 81  SDDFSNIHTFG 91
           S D   I   G
Sbjct: 299 SQDTQGIG-LG 308


>gi|228964033|ref|ZP_04125163.1| Histidine Kinase [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228795685|gb|EEM43162.1| Histidine Kinase [Bacillus thuringiensis serovar sotto str.
          T04001]
          Length = 523

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSE 66
          P+  + EL++NS DA++S VE V++        +I+D+G GM ++
Sbjct: 25 PASIV-ELVKNSYDADASYVEIVLSKINDQLHIKISDDGHGMDTD 68


>gi|289677872|ref|ZP_06498762.1| sensor histidine kinase [Pseudomonas syringae pv. syringae FF5]
          Length = 210

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA     S  +E  I   G      + DNG G+ +E +P       T+K
Sbjct: 110 LLRNALDAMRECRSRHLEVRIDAVGNYWRLSVRDNGSGIAAENLPSIFDPFFTTK 164


>gi|269793521|ref|YP_003312976.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269095706|gb|ACZ20142.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 492

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            ++ L++N+L   +SRV   +  G      + D+G G+ + +     +R  
Sbjct: 392 VVRNLVDNALRHSASRVLVEVRDG---RVVVEDDGPGIAAADRERVFERFT 439


>gi|260779257|ref|ZP_05888149.1| C4-dicarboxylate transport sensor protein putative [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605421|gb|EEX31716.1| C4-dicarboxylate transport sensor protein putative [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 684

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  +       +E   +       +I DNG G+  + +    +  
Sbjct: 578 RLRHVLGNLVGNALDAMVNTDFPRLDIEVRCSSNEVE-IRIIDNGCGVEQDNLERMFEPF 636

Query: 76  CTS-KISDDF 84
            TS KI +  
Sbjct: 637 YTSKKIGEGL 646


>gi|324993631|gb|EGC25550.1| hypothetical protein HMPREF9390_0017 [Streptococcus sanguinis
           SK405]
 gi|324995057|gb|EGC26970.1| hypothetical protein HMPREF9392_1873 [Streptococcus sanguinis
           SK678]
 gi|327462900|gb|EGF09221.1| hypothetical protein HMPREF9378_0016 [Streptococcus sanguinis SK1]
          Length = 634

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 30/202 (14%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE-----IPMA-VQRH--CTSKI 80
           ELI NS DA++  V   ++G       I D+G GMT  E     + +A   R+    SK 
Sbjct: 33  ELIANSYDADAENVWLDLSG---DSIIIEDDGHGMTYAETVNKYLEVAKSTRNTEAESKS 89

Query: 81  SDDFSNIHTFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA---- 135
                     G +G   L ++   + + + ++     +G  +  +  K  ++ P+     
Sbjct: 90  RK--FQRPKMGRKGIGKLAALAVSTEVNVKTKSNGELSGFVLTRNVPKDRNLHPIPESEI 147

Query: 136 -----MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                   GT +E+ +  F +PA    +K+   +             + PK  F      
Sbjct: 148 TFSNISESGTRIEMLNSEFKLPATTITVKNNLAKFFPQL-------SSNPKNPFVLHIRG 200

Query: 191 SNRYKMNFQSTNGNFPERISQV 212
            +       +   +    +  +
Sbjct: 201 KDGINKKLDNFVDSLATSLDSL 222


>gi|332557563|ref|ZP_08411885.1| sensor histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332275275|gb|EGJ20590.1| sensor histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 587

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA  +    +++ V+A G  +   + DNG G+  E++    +   T
Sbjct: 477 RLEQVIINLLRNALDATKTVPSPQIDLVLAAGETATLTVRDNGHGI--EDLDNLFEPFYT 534

Query: 78  SK 79
           +K
Sbjct: 535 TK 536


>gi|302187766|ref|ZP_07264439.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
          Length = 585

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+ +E +P       
Sbjct: 477 RLEQVLINLLRNALDAMRECRSKRLEVRIDAVDNQWRLSVRDNGSGIAAENLPSIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|221638539|ref|YP_002524801.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221159320|gb|ACM00300.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 587

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA  +    +++ V+A G  +   + DNG G+  E++    +   T
Sbjct: 477 RLEQVIINLLRNALDATKTVPSPQIDLVLAAGETATLTVRDNGHGI--EDLDNLFEPFYT 534

Query: 78  SK 79
           +K
Sbjct: 535 TK 536


>gi|121608165|ref|YP_995972.1| hypothetical protein Veis_1182 [Verminephrobacter eiseniae EF01-2]
 gi|121552805|gb|ABM56954.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 671

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-HCTSKISD 82
           +  + E + N+ DA++S V   +    +   +I D+G GM+ +++     R     +  +
Sbjct: 46  AAVLTEAVANAWDADASSVRVRVDPNNQW-VEIEDDGIGMSVDDLNGKYLRVGYRRRDDE 104

Query: 83  DFSNIH-------TFGFRG---EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
           D  +           G +G    +L SI  V  + + S    +  G ++ +   K +   
Sbjct: 105 DAEHGRKTAKGRPVMGRKGLGKLSLFSIADV--IEVQSAKNGDRHGFRMTVPDIKKAVHE 162

Query: 133 P 133
            
Sbjct: 163 K 163


>gi|126461573|ref|YP_001042687.1| integral membrane sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103237|gb|ABN75915.1| integral membrane sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 604

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA  +    +++ V+A G  +   + DNG G+  E++    +   T
Sbjct: 494 RLEQVIINLLRNALDATKTVPSPQIDLVLAAGETATLTVRDNGHGI--EDLDNLFEPFYT 551

Query: 78  SK 79
           +K
Sbjct: 552 TK 553


>gi|46199441|ref|YP_005108.1| two-component system histidine kinase [Thermus thermophilus HB27]
 gi|46197067|gb|AAS81481.1| two-component system histidine kinase [Thermus thermophilus HB27]
          Length = 468

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L A +  V       G K+  ++ D+G G+  E +P   +R  
Sbjct: 355 DRLHQVMANLVSNALKAGARHVWLRAFDLGDKAVVRVEDDGEGIPEEHLPHLFERFY 411


>gi|55981472|ref|YP_144769.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772885|dbj|BAD71326.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 468

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L A +  V       G K+  ++ D+G G+  E +P   +R  
Sbjct: 355 DRLHQVMANLVSNALKAGARHVWLRAFDLGDKAVVRVEDDGEGIPEEHLPHLFERFY 411


>gi|328885555|emb|CCA58794.1| two-component system sensor kinase [Streptomyces venezuelae ATCC
           10712]
          Length = 557

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 23  PSIAIKELIENSLDA-----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
               +  L++N+LDA      + R++      G++   ++TD+G G+  E   +      
Sbjct: 432 LVTVVGNLVDNALDAVAGTPGA-RIDVSFRTEGRTVVLRVTDSGPGVPEERRELIFTEGW 490

Query: 77  TSKISDDFSNIHTFGFRGEALP 98
           T+K       + + G RG  L 
Sbjct: 491 TTK------ALPSHGKRGLGLA 506


>gi|288573114|ref|ZP_06391471.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568855|gb|EFC90412.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 628

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 77/208 (37%), Gaps = 23/208 (11%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE--EIPMAVQRHCTSKISDD 83
            + ELI N+ DA++  V  +    G+   ++ D+G GM+    +I   +     S+ +++
Sbjct: 32  VLAELIANAYDADAKNVYII---AGRDDIRVEDDGHGMSYSSGDISKYLNVAGVSRTNEE 88

Query: 84  FSNIHT-----FGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGAQIAISG---------EK 127
            S   +      G +G   L ++ +VS  + +M+      +G  ++             +
Sbjct: 89  DSFTKSGDRRKMGRKGVGKLAAL-SVSENVDVMTIADGEKSGFVLSRRPEEGNRLKAIPE 147

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIAYPKVSFTF 186
              +    +  GT + +R   + +   L  +K +      L+    R   +   +     
Sbjct: 148 TGIIFENIIEHGTAIIMRAPQYRLHKTLEAIKRNLLKIFPLVNADFRIHIVRGTESEIID 207

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIG 214
              KS   ++    T G     +  ++ 
Sbjct: 208 DFDKSIMNELGTLITLGEDYSSLCNLVP 235


>gi|330818417|ref|YP_004362122.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia gladioli BSR3]
 gi|327370810|gb|AEA62166.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia gladioli BSR3]
          Length = 679

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 20/83 (24%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L+ N+LDA     + R+   I    G     + DNG G+  E +P   +   T+K     
Sbjct: 570 LLGNALDAVAGVAAPRILVSIEANPGTIVITVADNGPGVPPELLPRLFEPFFTTK----- 624

Query: 85  SNIHTFGFRGEAL-----PSIGA 102
                 G RG  L      SI +
Sbjct: 625 ----EMG-RGLGLGLAISSSIAS 642


>gi|126735803|ref|ZP_01751548.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. CCS2]
 gi|126714990|gb|EBA11856.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. CCS2]
          Length = 567

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 17/85 (20%)

Query: 3   IRKLSEKII----NQIAAGEIIERPSIAIKELIENSLDA---ESS-RVETVIAGGGKSFF 54
           IR L  + +    +++   ++I         L+ N+LDA    ++  +E ++A G     
Sbjct: 441 IRTLPNEPVMIMGDRLRLEQVIIN-------LLRNALDATKSAANPTIEILLAAGDTVSI 493

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSK 79
           QI DNG G+  E +    +   T+K
Sbjct: 494 QIRDNGEGI--ENLDDLFEPFYTTK 516


>gi|306831763|ref|ZP_07464920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|304426188|gb|EFM29303.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
          Length = 650

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I         + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIEVFIEED--DSITVVDDGRGIPVD 90


>gi|237725526|ref|ZP_04556007.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436213|gb|EEO46290.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 537

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHCTSKIS 81
           + A+ ++++NS+ A ++++   +        ++   DNG GM  + +  A++    SK  
Sbjct: 34  NTAVADIVDNSIAANATKINIEVNMDPNMQVKVYFADNGCGMDLDGLKNAMK--YGSK-- 89

Query: 82  DDFSNI--HTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMN 137
                I  ++ G  G  L   S       +L+SR   ++   +         +     + 
Sbjct: 90  ---ERIEKNSLGKFGLGLKTASTAFCKQFSLISRNSPDSE-LRKVQWDLDYIANNGSWLL 145

Query: 138 PGTIV 142
              ++
Sbjct: 146 QFPVI 150


>gi|254488602|ref|ZP_05101807.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Roseobacter sp. GAI101]
 gi|214045471|gb|EEB86109.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Roseobacter sp. GAI101]
          Length = 771

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 25  IAIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            A+ ELI+N+ DA+++ V          G     I DNG GM  + I  +  R  T
Sbjct: 66  TALSELIKNAYDADATEVNITFANFEKAGGELI-IADNGVGMDIDTIRNSWMRLST 120


>gi|120402406|ref|YP_952235.1| GAF sensor signal transduction histidine kinase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955224|gb|ABM12229.1| GAF sensor signal transduction histidine kinase [Mycobacterium
           vanbaalenii PYR-1]
          Length = 559

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 4   RKLSEKIINQIAAGEI-----------IERPS------IAIKELIENSL-DAESSRVETV 45
           ++L E  I Q  A ++           +  P+        ++E + N++  + ++ ++  
Sbjct: 441 QRLDEA-IAQFTASDVHTTVQFSGPLSVVDPALSDHAEAVVREAVSNAIRHSGATTLDVS 499

Query: 46  IAGGGKSFFQITDNGFGMTSE 66
           +    +   ++ D+G GM ++
Sbjct: 500 VTAADELIIEVADDGCGMPAD 520


>gi|206900988|ref|YP_002251257.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740091|gb|ACI19149.1| DNA gyrase, B subunit [Dictyoglomus thermophilum H-6-12]
          Length = 635

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 38/227 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR---------H 75
           EL++NS+D   A     +   +   G     + DNG G+  +  P A +          H
Sbjct: 45  ELVDNSIDEVMAGYCDYILVELKKDGA--VVVADNGRGIPVDIHPQAKKPALEVVLTTLH 102

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K S+    I + G  G  L  + A+ S L +              +   KI      
Sbjct: 103 AGGKFSNSIYKI-SGGLHGVGLSVVNALSSKLEV------------EVMRDGKIFYQVYE 149

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLK------SEQVETNLITDVIRRMAIAYPKVSFTFST 188
              P T + V+        ++ F        + + + +++ + +R +A   PKV+     
Sbjct: 150 RGKPITPLTVKGETDKTGTKIKFYPDPEIFETTKFDYDIVANRLRELAFLNPKVTIELR- 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQV-IGEDFINNAVELNEKSNEITLQ 234
                 + N     G   E I  +  G++ ++  + +  +   + L+
Sbjct: 209 -DERTGRSNIFKYEGGLLEFIEYLSKGKEVLHEPIYMEREEGNLILE 254


>gi|319791343|ref|YP_004152983.1| DNA mismatch repair protein [Variovorax paradoxus EPS]
 gi|315593806|gb|ADU34872.1| putative DNA mismatch repair protein [Variovorax paradoxus EPS]
          Length = 663

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            P  AI EL+ N  DA++  V  ++  G   G +   ++D+G G+  E       R   
Sbjct: 24 TDPWRAIAELVWNGFDAKALNVGVLVDEGPMGGATRVDVSDDGEGIELETHAETFGRFND 83

Query: 78 SKISDDFSNIHTFGFRG 94
          S   +D +   + G RG
Sbjct: 84 SSKKEDVTTHGSHG-RG 99


>gi|291515627|emb|CBK64837.1| hypothetical protein AL1_26550 [Alistipes shahii WAL 8301]
          Length = 588

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 85/225 (37%), Gaps = 23/225 (10%)

Query: 26  AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE--EIPMAVQRHCTSKISDD 83
            + EL+ N+ DA++  V   I+   K   +I D+G GM+ +  E+   +     S++ ++
Sbjct: 31  VLAELVANAYDADAHNVYI-ISN--KDDIRIEDDGHGMSYQNGEVKKFLNVAGVSRVKEE 87

Query: 84  FSNIHT-----FGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGAQIAISGE---------K 127
            S   +      G +G   L ++ +VS  + +M+      +G  ++              
Sbjct: 88  ESMTRSGERRKMGRKGVGKLAAL-SVSESVDVMTISDNEKSGFVLSRRPIDGNKLRPIAD 146

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIAYPKVSFTF 186
                      GT + +R+  + +   ++ +K +      L+ D  +   I   +     
Sbjct: 147 DDIKFVYIQEHGTAIVMRNPQYRLNKSMDSVKRNLLKIFPLVNDNFKIHIIRGNETVTID 206

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
           +  ++   ++    + G+    +++ I   +     EL E     
Sbjct: 207 TFDENIAKELCAFISLGDDFSDLAKNIPNQYPAKRTELVEHREPY 251


>gi|89897136|ref|YP_520623.1| hypothetical protein DSY4390 [Desulfitobacterium hafniense Y51]
 gi|89336584|dbj|BAE86179.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 477

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 20  IERPSIAIKELIENSLDAESS---RVETVIAG-GGKSFF-QITDNGFGMTSEEIPMAVQR 74
           ++R    I+ L++N++   ++    +   +    G+     I DNG G+  +++P   +R
Sbjct: 347 VDRLEQIIRNLLKNAI--AATENGTIRVGVEERYGREVVLTIEDNGTGIAPDDLPHIWER 404

Query: 75  HC 76
             
Sbjct: 405 FY 406


>gi|219667005|ref|YP_002457440.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537265|gb|ACL19004.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 540

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 20  IERPSIAIKELIENSLDAESS---RVETVIAG-GGKSFF-QITDNGFGMTSEEIPMAVQR 74
           ++R    I+ L++N++   ++    +   +    G+     I DNG G+  +++P   +R
Sbjct: 410 VDRLEQIIRNLLKNAI--AATENGTIRVGVEERYGREVVLTIEDNGTGIAPDDLPHIWER 467

Query: 75  HC 76
             
Sbjct: 468 FY 469


>gi|297625214|ref|YP_003686977.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920979|emb|CBL55516.1| DNA gyrase subunit B [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 680

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 6/47 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++E+++NS+D   A  +  +E  +  GG    ++ DNG G+   E P
Sbjct: 71  VREIVDNSVDEALAGYADSIEVTLLNGG--GCRVVDNGRGIPVAEHP 115


>gi|332826653|gb|EGJ99479.1| hypothetical protein HMPREF9455_04131 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 663

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 17 GEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          G ++  P IA+ EL+ N+ DA ++ V+  I         + DNG G+T E+  
Sbjct: 43 GALVHFPEIALTELVANAWDAGATMVDIFIPEDYDQKLTVEDNGTGLTKEQFE 95


>gi|67599551|ref|XP_666295.1| DNA mismatch repair protein, C-terminal domain [Cryptosporidium
           hominis TU502]
 gi|54657263|gb|EAL36066.1| DNA mismatch repair protein, C-terminal domain [Cryptosporidium
           hominis]
          Length = 363

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 425 GLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG 484
            + I+DQHA+ E+  FEK+  D ++  I +Q L++P  I L   +  L++ + +   + G
Sbjct: 172 HIFIIDQHASDEKARFEKLNSDLSN--IQTQKLISPLSISLTPSQEQLVISYKDIFEQNG 229

Query: 485 IKAERFGPNA-----IAIREIPAILSKKNIPQLLRDIIDEI 520
            +   F  N+     I + ++P IL          D++ +I
Sbjct: 230 FRF-IFNSNSEIGSRIQLTQLPVILGIPLKQIDFLDLLSQI 269


>gi|153001455|ref|YP_001367136.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS185]
 gi|217972613|ref|YP_002357364.1| PAS/PAC sensor-containing signal transduction histidine kinase
           [Shewanella baltica OS223]
 gi|151366073|gb|ABS09073.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS185]
 gi|217497748|gb|ACK45941.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS223]
          Length = 360

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++ +       G      + DNG G+ +      ++   T+K
Sbjct: 249 LSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLEPFFTTK 306


>gi|160876180|ref|YP_001555496.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS195]
 gi|160861702|gb|ABX50236.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS195]
 gi|315268376|gb|ADT95229.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS678]
          Length = 360

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++ +       G      + DNG G+ +      ++   T+K
Sbjct: 249 LSSAINNLVMNSIEAGATEIRIQAKEEGDQLLLNVIDNGKGLDANMQQKVLEPFFTTK 306


>gi|296535368|ref|ZP_06897568.1| ATPase [Roseomonas cervicalis ATCC 49957]
 gi|296264310|gb|EFH10735.1| ATPase [Roseomonas cervicalis ATCC 49957]
          Length = 486

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 13/126 (10%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKI 80
             S A+ ++I+NS+ A +S+V+      G S    I D+G GM S ++  A++      +
Sbjct: 11  STSSALADIIDNSIAAAASKVDIEFVWAGASSHVTIVDDGRGMGSADLERAMR------L 64

Query: 81  SD----DFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
            D    D       G  G  +   S      LT+ SR     +  +  +     +     
Sbjct: 65  GDRNPLDPRAPGDLGRFGLGMKTASFSQCRRLTVASRQAGALSCLRWDLDEIVANGGHEW 124

Query: 135 AMNPGT 140
            +  G 
Sbjct: 125 ELFEGP 130


>gi|241889819|ref|ZP_04777117.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
 gi|241863441|gb|EER67825.1| DNA gyrase, B subunit [Gemella haemolysans ATCC 10379]
          Length = 638

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I  G  ++ ++ DNG G+  +
Sbjct: 46 EIVDNSIDEALAGYCNTITVAIEEG--NWIRVEDNGRGIPVD 85


>gi|302391438|ref|YP_003827258.1| hypothetical protein Acear_0652 [Acetohalobium arabaticum DSM 5501]
 gi|302203515|gb|ADL12193.1| conserved hypothetical protein [Acetohalobium arabaticum DSM 5501]
          Length = 448

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 30/171 (17%)

Query: 24  SIAI-KELIENSLDA-------ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           +  I +E I+NS+DA         +     +++  I     S   I DNG G++S+    
Sbjct: 23  AKVIYREYIQNSVDAIDEAINSGITDKCEAKIDIEINKNN-SKITIKDNGTGISSKNAVK 81

Query: 71  AVQRHCTSKISDDFSNIH----TFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAISG 125
                   K+ D  ++      T GFRG   L  +     L  ++     +    ++   
Sbjct: 82  --------KLLDIGNSTKNPESTIGFRGIGRLAGLSYCQKLKFVTSYKGEDKKTIVSFDA 133

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTI-PARLNFLKSEQVETNLITDVIRRM 175
            K+  +        T  ++  +   +  ++ +  K+++    +I + +  +
Sbjct: 134 NKLEKLLIP--GEYTDYDLLTVIKEVTKSKKHNEKTDKHYFKVILEEVNNI 182


>gi|529464|gb|AAA91333.1| topoisomerase II subunit B [Mycoplasma gallisepticum]
          Length = 633

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 23/241 (9%)

Query: 29  ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           EL +N++D A    ++++E V    G     +TDNG G+      +  +          H
Sbjct: 41  ELFDNAVDEALNGSANKIEVVHKKDG--SIIVTDNGRGIPVGKNLATNLSTVDTVYTVLH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D    + + G  G     + A+S   +++          I   G KI       
Sbjct: 99  AGGKFDDQAYKV-SGGLHGVGASVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKM 157

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +      +   +          K+ Q    +I + +   +  +  +   F    +    
Sbjct: 158 GSSTKHGTIIQFW----PDPTIFKNIQFNPYMIKERLHESSFLFKGLKIVFVDENNPELS 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
             F + +G           +  I+  +       +I + G      +    +     F N
Sbjct: 214 QTFIAKDGILEYLKYVNENKKTISKIIPFKGDYEKIVVDGCF---QYTDNESELIISFAN 270

Query: 256 G 256
            
Sbjct: 271 S 271


>gi|330973509|gb|EGH73575.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 585

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+ +E +P       
Sbjct: 477 RLEQVLINLLRNALDAMRECRSRRLEVRIDALDNQWRLSVRDNGSGIAAENLPSIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|66047221|ref|YP_237062.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a]
 gi|63257928|gb|AAY39024.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 585

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+ +E +P       
Sbjct: 477 RLEQVLINLLRNALDAMRECRSRRLEVRIDALDNQWRLSVRDNGSGIAAENLPSIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|307822419|ref|ZP_07652651.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum
          SV96]
 gi|307736985|gb|EFO07830.1| DNA topoisomerase IV, B subunit [Methylobacter tundripaludum
          SV96]
          Length = 630

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+  ++E+++NS+D   A  ++ ++ V+   G     ++DNG GM  +
Sbjct: 30 TRPNHLVQEVVDNSVDEAMAGHATAIDVVLYKDG--SVLVSDNGRGMPVD 77


>gi|254506154|ref|ZP_05118298.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
 gi|219550972|gb|EED27953.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
          Length = 688

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 18  EIIERPSIAIKELIENSLDA---ESS-RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           E+  R    +  LI N++DA    ++  +       G      ++DNG G+  +++    
Sbjct: 577 EV--RLRQVLGNLIRNAIDALKGRATPTISINAKRIGDKVTLDVSDNGCGIDPDQLGSIF 634

Query: 73  QRHCTS-KISDDF 84
           +   T+ KI +  
Sbjct: 635 EPFQTNKKIGEGL 647


>gi|330950102|gb|EGH50362.1| sensor histidine kinase [Pseudomonas syringae Cit 7]
          Length = 585

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+ ++++P       
Sbjct: 477 RLEQVLINLLRNALDAMRECRSRRLEVRIDAVDNQWRLSVRDNGSGIAAKDLPSIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|326436486|gb|EGD82056.1| hypothetical protein PTSG_02738 [Salpingoeca sp. ATCC 50818]
          Length = 1348

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 29  ELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIP 69
           ELI NS DA++  V       GG++  ++ D+G GM+ EEI 
Sbjct: 201 ELIHNSSDADARNVRIRPKTMGGETLIELRDDGVGMSKEEID 242


>gi|94971292|ref|YP_593340.1| hypothetical protein Acid345_4266 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553342|gb|ABF43266.1| conserved hypothetical protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 529

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD- 83
            AI ++I+NS+ A +  ++       + F  I D+G GM++  +  A  RH     S D 
Sbjct: 56  SAIADVIDNSISAGAQNIQIRFLPYDEPFVSILDDGIGMSARALVEA-MRHG----SQDP 110

Query: 84  --FSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
               +    G  G  L   S+     LT++S+        +  +   +  
Sbjct: 111 RLLRSSSDLGRFGLGLKTASLSQCRCLTVISKQNGELNARRWDLDLVEKR 160


>gi|257064075|ref|YP_003143747.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791728|gb|ACV22398.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
          Length = 586

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRH 75
            S A++ L+EN++  AES+ V+   +  G+     +++D+G G+  E+      R 
Sbjct: 480 LSHAVRNLLENAVRYAEST-VKVSCSQDGEGAVSIRVSDDGCGIPPEDRERVFGRF 534


>gi|116334590|ref|YP_796117.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116099937|gb|ABJ65086.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
          Length = 432

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 25  IAIKELIENSLDAESSR----VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  LI NS+DA + +    +   +A    +    ++DNG G++ E + +      T+K
Sbjct: 317 SILSNLIFNSVDALAGQPHGLIHVTVADNDTTILLNVSDNGSGISPETLALIFHPGFTTK 376

Query: 80  ISDDFSNIHTFGFRGEALP 98
            ++   ++    +RG  L 
Sbjct: 377 FNEATGDV----YRGIGLS 391


>gi|315186554|gb|EFU20313.1| Heat shock protein Hsp90 [Spirochaeta thermophila DSM 6578]
          Length = 615

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 51/197 (25%)

Query: 19  IIERPSI----AIKELIENSLDA---------------E---SSRVETVIAGGGKSFFQI 56
           II          ++EL+ N+ DA                   + R++      G+S+ Q+
Sbjct: 17  IIHSLYSHREIFLRELVSNASDALDKLRFLVLTDEAYKGVPFAPRIDIRFDEEGRSYLQV 76

Query: 57  TDNGFGMTSEEI-------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGAV 103
            D G GM  +++         +      S+++ D     T       GF      S   V
Sbjct: 77  EDTGIGMNEQDLIENLGTIAKSGTNEFLSRLTGDAKKDATLIGQFGVGF-----YSAFMV 131

Query: 104 S-HLTLMSRPPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +  + +++R             G+    + P      GT V+     +       F    
Sbjct: 132 ADRVEVLTRKAGEEKAFLWVSDGKGEYEILPAERAGHGTTVK----LYLNEQGKEFASRW 187

Query: 162 QVETNLITDVIRRMAIA 178
                 I +++RR +  
Sbjct: 188 -----RIEEIVRRYSNH 199


>gi|332367373|gb|EGJ45106.1| two component system histidine kinase [Streptococcus sanguinis
          SK1059]
          Length = 436

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM--AVQRHCTSKISD 82
          EL++N  DA+++ +  +I    +++  I DNG GM  ++I        H   K SD
Sbjct: 31 ELVKNGYDADATEISLIINSY-ENYIIIQDNGKGMNRDDIENKWLFVAHSEKKDSD 85


>gi|293395455|ref|ZP_06639739.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291422139|gb|EFE95384.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 999

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 17/116 (14%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDD 83
            AI EL++N+ DA +  V+       KS F I D+G GM+  +         T SK+   
Sbjct: 32  TAINELLKNAHDAYADHVDIDYFR-RKSLFIIRDDGVGMSRTDFENRWLTLGTESKVQHT 90

Query: 84  FSNI----HTFGFR---GE------ALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
            +++     +  FR   GE      A+ SIG    + ++++    N      I+ +
Sbjct: 91  NASLPPVDESKKFRHQMGEKGIGRLAIASIGK--QVLIITKAKNTNEITAAFINWQ 144


>gi|197311443|gb|ACH61925.1| DNA gyrase beta subunit [Acholeplasma sp. N93]
          Length = 549

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  +  G     Q+TDNG G+  +
Sbjct: 14 EIVDNSIDEALAGYASTIKVEVLPG--DIIQVTDNGRGIPVD 53


>gi|315640352|ref|ZP_07895468.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
          italicus DSM 15952]
 gi|315483888|gb|EFU74368.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
          italicus DSM 15952]
          Length = 649

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E V+     +   +TD+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATKIEVVVEKD--NSITVTDDGRGIPVD 90


>gi|254369845|ref|ZP_04985855.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica FSC022]
 gi|157122804|gb|EDO66933.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica FSC022]
          Length = 627

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          IE P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 28 IENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|114763658|ref|ZP_01443052.1| Hydrogen uptake histidine-kinase [Pelagibaca bermudensis HTCC2601]
 gi|114543659|gb|EAU46672.1| Hydrogen uptake histidine-kinase [Roseovarius sp. HTCC2601]
          Length = 443

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA     +  V   +A  GG++   ++DNG G+  E+         T+K
Sbjct: 342 LVQNALDAVDGGAAPEVRIDLAVQGGRARMTVSDNGPGIPDEQRAAVFDPFFTTK 396


>gi|213026862|ref|ZP_03341309.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 86

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%)

Query: 162 QVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNA 221
           + E N I ++IRR+A+A   V+   S       +    + +G    R+  + G  F+  A
Sbjct: 2   KTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGTPFLEQA 61

Query: 222 VELNEKSNEITLQGYTGIPTFN 243
           + +  +  ++TL+G+   P   
Sbjct: 62  LAIEWQHGDLTLRGWVADPNHT 83


>gi|146304517|ref|YP_001191833.1| DNA topoisomerase VI subunit B [Metallosphaera sedula DSM 5348]
 gi|259533984|sp|A4YHK7|TOP6B_METS5 RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|145702767|gb|ABP95909.1| DNA topoisomerase VI, B subunit [Metallosphaera sedula DSM 5348]
          Length = 531

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 24 SIAIKELIENSLDAESS-------RVETVIAGGGKS----FFQITDNGFGMTSEEIPMAV 72
            A++EL+EN+LDA  +        ++ +I    +        + DNG G+    +P A 
Sbjct: 33 YQALRELVENALDA--TDVHEILPSIKVIIERTSQEKEIYRLTVEDNGIGIPPHVVPDAF 90

Query: 73 QR-HCTSK 79
           R   +SK
Sbjct: 91 GRVLYSSK 98


>gi|127511483|ref|YP_001092680.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4]
 gi|126636778|gb|ABO22421.1| DNA topoisomerase IV subunit B [Shewanella loihica PV-4]
          Length = 628

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 70/183 (38%), Gaps = 23/183 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R++ ++     +  ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATRIDVILHKD--NSLEVIDDGRGMPVDIHPEEGIPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNN-TGAQIAISG 125
            + + + H   K S++     + G  G  +  + A+S  + +  R        A      
Sbjct: 88  ELILTKLHAGGKFSNNNYQ-FSGGLHGVGISVVNALSNRVEITVRRSGQVYEMAFEHGDK 146

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
            +  +V        T   V       P   ++  S       +  ++R  A+  P +   
Sbjct: 147 VEELTVTGTCGRRNTGTRV----HFWPTA-SYFDSVNFSIPKLIYLLRAKAVLCPGLRIK 201

Query: 186 FST 188
           F+ 
Sbjct: 202 FTN 204


>gi|327395164|dbj|BAK12586.1| DNA mismatch repair protein MutL [Pantoea ananatis AJ13355]
          Length = 816

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG +    + A+ ELI NS+DA +  V   I   G +     D+G G
Sbjct: 7  LDPEIIHHIIYSQAGSV----AKALIELIMNSVDAGAGAVILEITPEGFTC---RDDGHG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            +++++     R  T
Sbjct: 60 FASNDDVKRYFGRFGT 75


>gi|225691145|gb|ACO06246.1| restriction endonuclease R.BbrII [Bifidobacterium breve UCC2003]
          Length = 695

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 24 SIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEI 68
          +  + E + N+ DA+++ V        G     ITD+G GM ++ +
Sbjct: 26 AAVLSEFVANAWDADANNVSIDYKPDEGSGSITITDDGCGMDTDTL 71


>gi|167744429|ref|ZP_02417203.1| hypothetical protein Bpse14_40543 [Burkholderia pseudomallei 14]
          Length = 544

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 29 ELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIP 69
          ELI N+ DA++S V        G  +   + D+G GM+S++I 
Sbjct: 30 ELISNAYDADASNVRVEFLEQNGTPTAITVYDDGTGMSSDDIQ 72


>gi|55377343|ref|YP_135193.1| DNA topoisomerase VI subunit B [Haloarcula marismortui ATCC 43049]
 gi|74520118|sp|Q5V4R5|TOP6B_HALMA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|55230068|gb|AAV45487.1| type II DNA topoisomerase VI subunit B [Haloarcula marismortui ATCC
           43049]
          Length = 796

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 36/185 (19%)

Query: 23  PSIAIKELIENSLDA--ESS---RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR-- 74
              A+KE ++N+LDA  E+     +   I   G      + DNG G+T E+ P    +  
Sbjct: 47  LVTAVKEAVDNALDACEEAGILPDIYVEIQESGDYYKLVVEDNGPGITKEQAPKIFGKLL 106

Query: 75  -----HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQI 121
                H               G +G  +    AV  S LT      + SRP   +     
Sbjct: 107 YGSRFHA---------REQNRGQQGIGIS--AAVLYSQLTSGKPAKITSRPKGQDEAQYF 155

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +  +  ++   ++++  T  E           L    + +  + L  D I+  A+  P 
Sbjct: 156 ELIVDTDTNEPEISVDETTTWE---RPHGTRIELEMEANMRARSTL-RDYIQDTAVVNPH 211

Query: 182 VSFTF 186
               F
Sbjct: 212 ARVEF 216


>gi|89256995|ref|YP_514357.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica LVS]
 gi|115315355|ref|YP_764078.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica OSU18]
 gi|156503195|ref|YP_001429260.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|167009376|ref|ZP_02274307.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
          holarctica FSC200]
 gi|290954484|ref|ZP_06559105.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295312089|ref|ZP_06802902.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          holarctica URFT1]
 gi|89144826|emb|CAJ80165.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
          holarctica LVS]
 gi|115130254|gb|ABI83441.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis
          subsp. holarctica OSU18]
 gi|156253798|gb|ABU62304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
          holarctica FTNF002-00]
          Length = 627

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          IE P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 28 IENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|94263941|ref|ZP_01287744.1| ATP-binding region, ATPase-like [delta proteobacterium MLMS-1]
 gi|93455686|gb|EAT05865.1| ATP-binding region, ATPase-like [delta proteobacterium MLMS-1]
          Length = 1001

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 12 NQIAAGEIIERPSIAIKELIENSLDAESSRVETV-IAGGG---KSFFQITDNGFGMTSEE 67
           QIA    I+    A+ EL +N+ DA +  V        G   K F  + D+G GMT E+
Sbjct: 17 QQIA---TIQN---ALSELFKNAHDAYAQHVRVDYFEDAGPGDKGFIIVRDDGVGMTRED 70

Query: 68 IP 69
            
Sbjct: 71 FE 72


>gi|303272129|ref|XP_003055426.1| bromodomain-containing protein [Micromonas pusilla CCMP1545]
 gi|226463400|gb|EEH60678.1| bromodomain-containing protein [Micromonas pusilla CCMP1545]
          Length = 193

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 23 PSIAIKELIENSLD--AESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          P  A+ EL++N+ D    ++ V   +     G     + D+G GM    +   +    +S
Sbjct: 8  PLGALAELLDNAQDQECGATEVHVDVVNVAPGVPAITVQDDGVGMARANLHCMLSFGFSS 67

Query: 79 K 79
          K
Sbjct: 68 K 68


>gi|313672758|ref|YP_004050869.1| pas/pac sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939514|gb|ADR18706.1| PAS/PAC sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 649

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 25/102 (24%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKS----- 52
           KI    + +I  I  G+I    S  +  +I N++DA   S   ++   +     S     
Sbjct: 372 KINISDKSLIANIDTGQI----SQVLINMIVNAVDAVKNSEVKKIIIDVDNCSISKRMVE 427

Query: 53  ------------FFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
                         +I+D G G+  E++    +   T+K+  
Sbjct: 428 EKFIDLQPGEYILIEISDTGCGIPKEDLKKIFEPFYTTKLDS 469


>gi|227523612|ref|ZP_03953661.1| signal transduction histidine kinase [Lactobacillus hilgardii ATCC
           8290]
 gi|227089228|gb|EEI24540.1| signal transduction histidine kinase [Lactobacillus hilgardii ATCC
           8290]
          Length = 432

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 19/93 (20%)

Query: 25  IAIKELIENSLDA---ESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  LI NS+DA   +++  +   +     +    ++DNG GM  E + M  +   T+K
Sbjct: 317 SILSNLIFNSVDAMDDKANGLIRVTVADDNDQIIINVSDNGSGMDQETLAMIFEPGFTTK 376

Query: 80  ISDDFSNIHTFG--FRGEALPSIGAVSHLTLMS 110
             +      + G  +RG  L      SH+ +++
Sbjct: 377 FDE------STGVVYRGIGL------SHVKIIT 397


>gi|227508406|ref|ZP_03938455.1| signal transduction histidine kinase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227511413|ref|ZP_03941462.1| signal transduction histidine kinase [Lactobacillus buchneri ATCC
           11577]
 gi|227085364|gb|EEI20676.1| signal transduction histidine kinase [Lactobacillus buchneri ATCC
           11577]
 gi|227192056|gb|EEI72123.1| signal transduction histidine kinase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 432

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 19/93 (20%)

Query: 25  IAIKELIENSLDA---ESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  LI NS+DA   +++  +   +     +    ++DNG GM  E + M  +   T+K
Sbjct: 317 SILSNLIFNSVDAMDDKANGLIRVTVADDNDQIIINVSDNGSGMDQETLAMIFEPGFTTK 376

Query: 80  ISDDFSNIHTFG--FRGEALPSIGAVSHLTLMS 110
             +      + G  +RG  L      SH+ +++
Sbjct: 377 FDE------STGVVYRGIGL------SHVKIIT 397


>gi|20090445|ref|NP_616520.1| DNA topoisomerase VI subunit B [Methanosarcina acetivorans C2A]
 gi|23822278|sp|Q8TQF7|TOP6B_METAC RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|19915460|gb|AAM05000.1| DNA topoisomerase subunit B [Methanosarcina acetivorans C2A]
          Length = 621

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 67/213 (31%), Gaps = 50/213 (23%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAV------Q 73
           +KE ++NSLDA  E+     +   +   G+ +  +   DNG G+  E+IP          
Sbjct: 42  VKEAVDNSLDACEEAGILPDILVQVERTGQDYVTVIIEDNGPGIVREQIPKVFAKLLYGS 101

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISG 125
           R    K         + G +G  +    AV  + +T      ++S+   N       +  
Sbjct: 102 RFHALK--------QSRGQQGIGIS--AAVLYAQMTAGRHTKILSKTGSNVPAHYYELMI 151

Query: 126 EK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                     +  VR      GT +E+      +  R             I + ++  AI
Sbjct: 152 NTSTNEPDILMDEVRDWFRPHGTQIELEMKAAYVKGRRQS----------IYEYLKATAI 201

Query: 178 AYPKVSFTFST-IKSNRYKMNFQSTNGNFPERI 209
             P    T      +            +  E I
Sbjct: 202 VNPHARITLIDPDGNEEVFERATDKIPDPAEEI 234


>gi|323350985|ref|ZP_08086642.1| hypothetical protein HMPREF9398_0690 [Streptococcus sanguinis
          VMC66]
 gi|322122709|gb|EFX94418.1| hypothetical protein HMPREF9398_0690 [Streptococcus sanguinis
          VMC66]
          Length = 676

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          EL+ NS DA ++RV+  ++        I DNG G++ EE+ 
Sbjct: 30 ELVANSYDAYATRVDIHLSD---DSISIVDNGKGLSFEELE 67


>gi|312872743|ref|ZP_07732808.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091785|gb|EFQ50164.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 653

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I+     + E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 48 IQGLHHLVWEIIDNSIDEKLAGFATKIEITVNEDG--SVTVEDDGRGIPVD 96


>gi|312874887|ref|ZP_07734906.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089632|gb|EFQ48057.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 653

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I+     + E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 48 IQGLHHLVWEIIDNSIDEKLAGFATKIEITVNEDG--SVTVEDDGRGIPVD 96


>gi|309809774|ref|ZP_07703628.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Lactobacillus iners SPIN 2503V10-D]
 gi|308169953|gb|EFO71992.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Lactobacillus iners SPIN 2503V10-D]
          Length = 240

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I+     + E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 48 IQGLHHLVWEIIDNSIDEKLAGFATKIEITVNEDG--SVTVEDDGRGIPVD 96


>gi|309804841|ref|ZP_07698903.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Lactobacillus iners LactinV 09V1-c]
 gi|308165780|gb|EFO68001.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Lactobacillus iners LactinV 09V1-c]
          Length = 240

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I+     + E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 48 IQGLHHLVWEIIDNSIDEKLAGFATKIEITVNEDG--SVTVEDDGRGIPVD 96


>gi|259500773|ref|ZP_05743675.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          iners DSM 13335]
 gi|302190776|ref|ZP_07267030.1| DNA gyrase, B subunit [Lactobacillus iners AB-1]
 gi|309804063|ref|ZP_07698144.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|309805911|ref|ZP_07699943.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b]
 gi|309807813|ref|ZP_07701745.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|312871188|ref|ZP_07731286.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|312873296|ref|ZP_07733351.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|315654135|ref|ZP_07907051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          iners ATCC 55195]
 gi|325912201|ref|ZP_08174598.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D]
 gi|325913628|ref|ZP_08175990.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B]
 gi|329919730|ref|ZP_08276681.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G]
 gi|259167467|gb|EEW51962.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          iners DSM 13335]
 gi|308163831|gb|EFO66097.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308167687|gb|EFO69834.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308168915|gb|EFO71001.1| DNA gyrase, B subunit [Lactobacillus iners LactinV 01V1-a]
 gi|311091176|gb|EFQ49565.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311093202|gb|EFQ51548.1| DNA gyrase, B subunit [Lactobacillus iners LEAF 3008A-a]
 gi|315488831|gb|EFU78477.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          iners ATCC 55195]
 gi|325475860|gb|EGC79029.1| DNA gyrase, B subunit [Lactobacillus iners UPII 143-D]
 gi|325476987|gb|EGC80137.1| DNA gyrase, B subunit [Lactobacillus iners UPII 60-B]
 gi|328937077|gb|EGG33505.1| DNA gyrase, B subunit [Lactobacillus iners SPIN 1401G]
          Length = 653

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I+     + E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 48 IQGLHHLVWEIIDNSIDEKLAGFATKIEITVNEDG--SVTVEDDGRGIPVD 96


>gi|237801661|ref|ZP_04590122.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024520|gb|EGI04576.1| DNA gyrase subunit B [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 805

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  I G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|254497819|ref|ZP_05110586.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12]
 gi|254352950|gb|EET11718.1| DNA topoisomerase IV subunit B [Legionella drancourtii LLAP12]
          Length = 629

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 92/252 (36%), Gaps = 29/252 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---EIPMAVQ 73
            RP+   +E+I+NS+D   A  ++ +   +   G    ++ D+G GM  +   ++ ++  
Sbjct: 32  TRPNHLAQEVIDNSVDEVLAGFATHITVTLHEDG--SVEVEDDGRGMPVDLHPQLGLSGV 89

Query: 74  R------HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQ---NNTGAQIAI 123
                  H   K SD   +  + G  G  +  + A+S  L +  +        + A    
Sbjct: 90  EVIMTRLHAGGKFSDKNYS-FSGGLHGVGVSVVNALSDRLEVTIKRNGIVYQMSFANGDK 148

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
           + E          + GT +              +  + ++    +T ++R  A+    +S
Sbjct: 149 TCELNEIGITKKRDTGTTIRFW-------PNAKYFDTTRISIKHLTHILRAKAVLCTGLS 201

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
            TF   K+N  + ++   +G   + ++Q +G+           +           +   N
Sbjct: 202 MTF-INKTNNEESHWCYEHG-LVDYMNQSLGDGDYLPEEPFAGEFKSDDATVDWALVWSN 259

Query: 244 RGNANQFYVFIN 255
             +A     ++N
Sbjct: 260 GASAGFSESYVN 271


>gi|312622467|ref|YP_004024080.1| histidine kinase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202934|gb|ADQ46261.1| histidine kinase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 185

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS++A +S V+  I    K       I DNG G+  + I        T
Sbjct: 11 LVQNSIEAGASLVKIEIVEDLKEDLFTITIEDNGRGIPKDVIDKVTDPFYT 61


>gi|222529287|ref|YP_002573169.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456134|gb|ACM60396.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 185

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS++A +S V+  I    K       I DNG G+  + I        T
Sbjct: 11 LVQNSIEAGASLVKIEIVEDLKEDLFTITIEDNGRGIPKDVIDKVTDPFYT 61


>gi|83311381|ref|YP_421645.1| uptake hydrogenase [Magnetospirillum magneticum AMB-1]
 gi|82946222|dbj|BAE51086.1| uptake hydrogenase [Magnetospirillum magneticum AMB-1]
          Length = 442

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR----VETVIA-GGGKSFFQITDNG 60
           L + +  +   G+        I  LIEN+LDA + R    VE      GG++   I DNG
Sbjct: 325 LPDHLAVRGNPGQ----LHQVIVNLIENALDAVAGRPDGRVEVTGKAEGGQTVLTIADNG 380

Query: 61  FGMTSEEIPMAVQRHCTSK 79
            G+  + +        T+K
Sbjct: 381 PGIPPDIVGKVFDPFFTTK 399


>gi|73539890|ref|YP_294410.1| sensory histidine kinase CreC [Ralstonia eutropha JMP134]
 gi|72117303|gb|AAZ59566.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 481

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 30  LIENSLD---AESSR-VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN+LD   A S+  ++   A  G+   Q+ D+G G+    +P   +R  
Sbjct: 381 LLENALDFAPAGSTVLIDVTGAPAGQIAIQVADDGPGIPDYALPRLFERFY 431


>gi|315427860|dbj|BAJ49452.1| DNA topoisomerase VI subunit B [Candidatus Caldiarchaeum
           subterraneum]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 33/86 (38%)

Query: 27  IKELIENSLDA---ESSRV--ETVIAGG------GKSFFQITDNGFGMTSEEIPMAVQRH 75
           I+EL+ENSLDA      R+  E +I  G      G    ++ DNG G+  ++IP A    
Sbjct: 43  IRELVENSLDAAEMG--RILPEVLIELGEEDSERGVYRLRVVDNGVGVPGDKIPSAF--- 97

Query: 76  CT----SKISDDFSNIHTFGF---RG 94
            T    SK          +GF   RG
Sbjct: 98  ATVLYGSK----------YGFKQSRG 113


>gi|315426179|dbj|BAJ47823.1| DNA topoisomerase VI subunit B [Candidatus Caldiarchaeum
           subterraneum]
          Length = 520

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 33/86 (38%)

Query: 27  IKELIENSLDA---ESSRV--ETVIAGG------GKSFFQITDNGFGMTSEEIPMAVQRH 75
           I+EL+ENSLDA      R+  E +I  G      G    ++ DNG G+  ++IP A    
Sbjct: 45  IRELVENSLDAAEMG--RILPEVLIELGEEDSERGVYRLRVVDNGVGVPGDKIPSAF--- 99

Query: 76  CT----SKISDDFSNIHTFGF---RG 94
            T    SK          +GF   RG
Sbjct: 100 ATVLYGSK----------YGFKQSRG 115


>gi|169247658|gb|ACA51658.1| hypothetical protein [Thermoanaerobacterium saccharolyticum]
          Length = 181

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 28 KEL-------IENSLDAESSRVETVIA-GGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCT 77
          KEL        +NS+ A +  +   +     K F +  I D+G GM  E +  A     T
Sbjct: 2  KELSLYILDIAQNSIKAGAKNISIKLEIDHKKDFMRLSIEDDGCGMDDELLKKAFDPFTT 61


>gi|160880259|ref|YP_001559227.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160428925|gb|ABX42488.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 464

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           ER S  I  L+ N++    D    ++   +     +   Q+ DNG G+  EE+P   +R 
Sbjct: 356 ERISQVIINLLSNAIKYTPDFG--KIVISLEDYETNLVIQMKDNGIGIPEEELPFIFERF 413

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAV-----SHLTLMSR 111
                  D S     G  G  L  + +V       + + S+
Sbjct: 414 Y----RADKSRNRRTGGAGIGLAIVKSVVHSHGGKVEVSSK 450


>gi|330964178|gb|EGH64438.1| DNA gyrase subunit B [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 805

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  I G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|330876358|gb|EGH10507.1| DNA gyrase subunit B [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 805

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  I G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|295694967|ref|YP_003588205.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295410569|gb|ADG05061.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 371

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           ER +  +  L+ N+L  +++    +V       G     +I D G G+  +E+    +R 
Sbjct: 252 ERLTQVVTNLLSNAL--KATPQEGKVTVSAETAGVWRVIRIQDTGRGIPPQELAKVFERF 309

Query: 76  C 76
            
Sbjct: 310 Y 310


>gi|83859005|ref|ZP_00952526.1| heat shock protein G homolog [Oceanicaulis alexandrii HTCC2633]
 gi|83852452|gb|EAP90305.1| heat shock protein G homolog [Oceanicaulis alexandrii HTCC2633]
          Length = 666

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--KI 80
           P+  + E++ N+ DA++ +V+  I         I D+G GM  +     + R  T   K 
Sbjct: 28  PA-VLSEVVANAWDADAKKVQVTIDKV-AETITIEDDGTGMDRD---GVIDRFLTVGFKR 82

Query: 81  SDDFSNIHTF-----GFRGEALPSIGAVSHL-TLMSRPPQNNTGAQIAISGEKI 128
            D+  ++        G +G    SI +V+ +  + +    + T  ++     + 
Sbjct: 83  RDELGDVTALGRKPMGRKGIGKLSIFSVAQVAEVFTTLDGDRTAFRMDREVIRK 136


>gi|28867247|ref|NP_789866.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968438|ref|ZP_03396581.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1]
 gi|301384274|ref|ZP_07232692.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato Max13]
 gi|302063876|ref|ZP_07255417.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato K40]
 gi|302131959|ref|ZP_07257949.1| DNA gyrase subunit B [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28850481|gb|AAO53561.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926726|gb|EEB60278.1| DNA gyrase, subunit B [Pseudomonas syringae pv. tomato T1]
 gi|331017722|gb|EGH97778.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 805

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  I G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|323343849|ref|ZP_08084076.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
 gi|323095668|gb|EFZ38242.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
          Length = 672

 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 76/254 (29%), Gaps = 41/254 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ--------- 73
           + E ++NS+D   A   + +E  I         + DNG G+  +E     +         
Sbjct: 60  VNETVDNSIDEAMAGYCTDIEVTINED--ESITVQDNGRGIPVDEHKKLHKSALEVVMTV 117

Query: 74  RHCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            H   K       + + G  G       AL S        ++S+  ++    Q      K
Sbjct: 118 LHAGGKFDKGSYKV-SGGLHGVGVSCVNALSS-------HMLSQVFRDGKIYQQEYEKGK 169

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
                 V          +  +           +   + ++I   +R +A     +  T +
Sbjct: 170 PLYPVKVMGTTDKRGTRQQFW----PDKTIFTTIHYQWDIIARRMRELAYLNAGIKITLT 225

Query: 188 T---IKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGYTGIPTF 242
                +  + ++          E +  V        ++ + L  +   I ++       +
Sbjct: 226 DLRANEEGKPRVEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIPIEVAI---MY 282

Query: 243 NRGNANQFYVFING 256
           N   +   + ++N 
Sbjct: 283 NTDYSENIHSYVNN 296


>gi|229489312|ref|ZP_04383176.1| ATPase [Rhodococcus erythropolis SK121]
 gi|229323805|gb|EEN89562.1| ATPase [Rhodococcus erythropolis SK121]
          Length = 505

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQ--ITDN 59
          KI    E +   I     I   + A+ +LI+NSLDA +S V       G       + DN
Sbjct: 13 KIFAADESLAGAIGLHHTI---ATALADLIDNSLDAAASHVLIRFVQDGTRIVSMMVIDN 69

Query: 60 GFGMTSEEIPMA 71
          G GM S+ I  A
Sbjct: 70 GSGMDSDTIDSA 81


>gi|255530846|ref|YP_003091218.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343830|gb|ACU03156.1| ATPase [Pedobacter heparinus DSM 2366]
          Length = 486

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 30  LIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC----TSKISDD 83
           LI+NS+ A+++++     +     SF +I DNG GM  +++  A++       T +  DD
Sbjct: 36  LIDNSISAKATKINISFGVDRY-ASFVRIEDNGTGMNEKQLRDAMRLGSLNPLTERSDDD 94

Query: 84  FSNIHTFGFRGEAL--PSIGAVSHLTLMSRPP 113
                  G  G  L   S       T+ ++  
Sbjct: 95  L------GRFGLGLKTASFAQCRRFTVKTKKA 120


>gi|222152812|ref|YP_002561989.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
 gi|222113625|emb|CAR41503.1| DNA gyrase subunit B [Streptococcus uberis 0140J]
          Length = 650

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIEVFIEED--NSITVVDDGRGIPVD 90


>gi|126731309|ref|ZP_01747116.1| C4-dicarboxylate transport sensor protein DctB, putative [Sagittula
           stellata E-37]
 gi|126708220|gb|EBA07279.1| C4-dicarboxylate transport sensor protein DctB, putative [Sagittula
           stellata E-37]
          Length = 586

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 19/105 (18%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE ++A G  +   + DNG G+  E++    +  
Sbjct: 476 RIEQVLVNLLRNALDA--TKSVDDPQVEIILAAGETATLSVRDNGDGI--EDLDALFEPF 531

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHL--TLMSRPPQNNTG 118
            T+K   D   +      G A+ S G VS L   L +R  ++   
Sbjct: 532 YTTKAPGDGVGL------GLAISS-GIVSELGGRLTARNGEDGGA 569


>gi|301629588|ref|XP_002943920.1| PREDICTED: DNA gyrase subunit B-like [Xenopus (Silurana)
           tropicalis]
          Length = 554

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 46  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 103

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L +++         Q  + G     ++ V 
Sbjct: 104 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLVLTVRRSGKIWEQTYVHGVPQEPMKIVG 162

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 163 ESETTGTQIH-----FRPSDETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 217

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       E  +     +   N         F N
Sbjct: 218 LFKY--EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFTN 274

Query: 256 GRTVQD 261
               +D
Sbjct: 275 NIPQRD 280


>gi|171185843|ref|YP_001794762.1| DNA topoisomerase VI subunit B [Thermoproteus neutrophilus V24Sta]
 gi|170935055|gb|ACB40316.1| DNA topoisomerase VI, B subunit [Thermoproteus neutrophilus V24Sta]
          Length = 530

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 27  IKELIENSLDAESS-----RV--ETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR-HC 76
           I+EL ENSLDA  +      +     +    K +  +   DNG G+   EIP    R   
Sbjct: 36  IRELTENSLDATETYGILPNIYLRINVEDEQKGWVSVYAEDNGIGIPGNEIPNVFGRVFY 95

Query: 77  TSKIS 81
           +SK  
Sbjct: 96  SSKYR 100


>gi|17556805|ref|NP_498104.1| MORC (mouse microrchidia) family CW-type zinc finger protein
          family member (morc-1) [Caenorhabditis elegans]
 gi|4885042|gb|AAD31935.1|U00064_7 Morc (mouse microrchidia) family cw-type zinc finger protein
          protein 1, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 845

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          P  AI EL++N+ DA++  +         + F ++ D+G GM  EE   A+    ++K S
Sbjct: 33 PLSAIAELVDNAYDADARDLHIDFLDINNEQFLELRDDGLGMAREEALHAITFGHSAKCS 92

Query: 82 DDFSNIHTFG 91
               I  +G
Sbjct: 93 ---YKIGRYG 99


>gi|115381158|gb|ABI96228.1| DNA gyrase subunit B [Spiroplasma alleghenense]
          Length = 552

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 110/358 (30%), Gaps = 62/358 (17%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ-RH 75
           E+I+NS+D   A  ++ +  VI     +   + DNG G+            +       H
Sbjct: 14  EIIDNSIDETLAGFANTITVVITNN--NEIIVKDNGRGIPIDIHPETKKSALETVFTVLH 71

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K S D   I + G  G       +V             +     +        R V 
Sbjct: 72  AGGKFSSDTYKI-SGGLHGVG----ASV---------VNALSLYVEVMVLRDNKIHRQVF 117

Query: 136 MNPGTIVEVRDLFFTIPARLNFLK----------SEQVETNLITDVIRRMAIAYPKVSFT 185
            + GT +   ++      +   +K          +   +   I + +++MA     V+  
Sbjct: 118 SDGGTKISALEIIGNTDVQGTLVKFKPDPEIFKETINFDFKTIQNKLKQMAFLNRGVTIN 177

Query: 186 FSTIKSNR-YKMNFQSTNGNFPERISQ----------VIGEDFINNAVELNEKSNEITLQ 234
               +S++    NF++   ++   I+            + E F + A+E   + N+   +
Sbjct: 178 LYDQRSDKEISYNFENGIEDYVTEINSGKNKINENVFSVNESFNDIAIEFAMQYNDSYTE 237

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQ 294
                   N   +         R    K I + +  +        +       ++     
Sbjct: 238 NLFS-FCNNIFTSEGGTHEEGLRQALVKVINNYLNESTKNV---KKTKFTWDDIKEGIVC 293

Query: 295 VDVNVH-----PAKSYIRFRNPT---IIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           V    H       ++  +  N      +   I + ++  + K    +  ++ K M+S 
Sbjct: 294 VLSIKHMDPQFEGQTKAKLSNLDAKEAVNQVITEKLKDYLLKNPEDSKKIIEKNMLSQ 351


>gi|330970328|gb|EGH70394.1| DNA gyrase subunit B [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 805

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDETLAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|302185843|ref|ZP_07262516.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae 642]
          Length = 805

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|160914817|ref|ZP_02077031.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
 gi|158433357|gb|EDP11646.1| hypothetical protein EUBDOL_00824 [Eubacterium dolichum DSM 3991]
          Length = 648

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ +E  I     +  ++ DNG GM 
Sbjct: 57 EIVDNSIDEALAGFATDIEIAIEKD--NVIRVEDNGRGMP 94


>gi|66043275|ref|YP_233116.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae B728a]
 gi|289677553|ref|ZP_06498443.1| DNA gyrase subunit B [Pseudomonas syringae pv. syringae FF5]
 gi|63253982|gb|AAY35078.1| DNA gyrase, B subunit [Pseudomonas syringae pv. syringae B728a]
 gi|330937293|gb|EGH41304.1| DNA gyrase subunit B [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 805

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDSTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|296160389|ref|ZP_06843206.1| histidine kinase [Burkholderia sp. Ch1-1]
 gi|295889370|gb|EFG69171.1| histidine kinase [Burkholderia sp. Ch1-1]
          Length = 666

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDAESS------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA +        +E  +A    SF  ++DNG G+  + +P   +  
Sbjct: 546 RLEQVLINLLGNALDATADIDSPRISIEIEVADANLSFV-VSDNGPGIADDVLPRLFEPF 604

Query: 76  CTSK 79
            T+K
Sbjct: 605 FTTK 608


>gi|256830398|ref|YP_003159126.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579574|gb|ACU90710.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 566

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 26/91 (28%)

Query: 3   IRK-LSEKIINQIAAGEIIERPS---IAIKELIENSLDAESSRVETVIAGGGKSF----- 53
           IR  L         AGE+   P+     I  L+ N++DA           G         
Sbjct: 442 IRLSLDPN------AGEVDSSPAEIQQIILNLVNNAIDA------IEHDDGMVQLRSFRE 489

Query: 54  -----FQITDNGFGMTSEEIPMAVQRHCTSK 79
                  + DNG G+ ++ +P   +   T+K
Sbjct: 490 HSFVRIDVEDNGQGIPADILPQIFEPFFTTK 520


>gi|187922526|ref|YP_001894168.1| histidine kinase [Burkholderia phytofirmans PsJN]
 gi|187713720|gb|ACD14944.1| histidine kinase [Burkholderia phytofirmans PsJN]
          Length = 666

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDAESS------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA +        +E  +A    SF  ++DNG G+  + +P   +  
Sbjct: 546 RLEQVLINLLGNALDATADLHPPRISIEIEVADANLSFV-VSDNGPGIADDVLPRLFEPF 604

Query: 76  CTSK 79
            T+K
Sbjct: 605 FTTK 608


>gi|260804471|ref|XP_002597111.1| hypothetical protein BRAFLDRAFT_76358 [Branchiostoma floridae]
 gi|229282374|gb|EEN53123.1| hypothetical protein BRAFLDRAFT_76358 [Branchiostoma floridae]
          Length = 725

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 18/114 (15%)

Query: 29  ELIENSLDAESSRV-------ETVIAG---GGKSFFQITDNGFGMTSEEI-PMAVQRHCT 77
           ELI+N+L A +  V         ++     GGK    + DNG GMTS+++   AV R   
Sbjct: 143 ELIDNALAATADNVGDRNIELRIILDDRIEGGKHCICVLDNGHGMTSKDLNDWAVYRL-- 200

Query: 78  SKI-SDDFSNIHTF---GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
           SK    D      +   G RG    +  A   +T+ +R     T  +  +   +
Sbjct: 201 SKFNRKDRRRSTGYSGPGMRGRGGAAQSA-PQVTVDTRTRAEPTAGESELGFWR 253


>gi|320353148|ref|YP_004194487.1| hypothetical protein Despr_1024 [Desulfobulbus propionicus DSM
          2032]
 gi|320121650|gb|ADW17196.1| hypothetical protein Despr_1024 [Desulfobulbus propionicus DSM
          2032]
          Length = 587

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 25 IAIKELIENSLDAESSRVETVIAGGGKSF---FQITDNGFGMTSEEIP 69
           AIKEL++N+ DA++ RV+  +     +      + D+G GM  EE+ 
Sbjct: 25 NAIKELVDNAWDADAERVKVFLPEP-LTVNPEIIVEDDGTGMIEEELR 71


>gi|315222619|ref|ZP_07864508.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Streptococcus anginosus F0211]
 gi|315188305|gb|EFU22031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Streptococcus anginosus F0211]
          Length = 722

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 20 IERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSE 66
          I+    A+ EL++NS DA++S V+   I    +    + D+G GM+ +
Sbjct: 20 IKDLPAALVELVKNSYDADASYVKITYIKNEDRLNIIVEDDGHGMSQD 67


>gi|221369828|ref|YP_002520924.1| hypothetical protein RSKD131_3991 [Rhodobacter sphaeroides KD131]
 gi|221162880|gb|ACM03851.1| Hypothetical Protein RSKD131_3991 [Rhodobacter sphaeroides KD131]
          Length = 634

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
          P  A +ELI N+ DA+++RV             + D+G GM +E +   ++
Sbjct: 48 PWAAFRELIANAYDADATRVIVDTGAPDFQQVSVRDDGHGMNAETLAYVLK 98


>gi|300790455|ref|YP_003770746.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299799969|gb|ADJ50344.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 445

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 5   KLSEK---IINQIAAGEIIE----RPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQI 56
           +L      +  +I A  +++    R    ++ L++N+    +SRV   +   GG     +
Sbjct: 316 RLPRDGVEVRTEIRADPVVQGHAGRLERVLRNLVDNAERHAASRVTITLTEAGGHGVLTV 375

Query: 57  TDNGFGMTSEEIPMAVQRH 75
            D+G G+ +E       R 
Sbjct: 376 RDDGPGIPAEHRERVFDRF 394


>gi|294661429|ref|YP_003579882.1| DNA topoisomerase II large subunit [Klebsiella phage KP15]
 gi|292660590|gb|ADE34838.1| DNA topoisomerase II large subunit [Klebsiella phage KP15]
          Length = 632

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 18  EIIERPSIAIKELIENSLD-A------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E +E     I E+++NS+D A       +++++  I        +I+DNG G+  +++ 
Sbjct: 65  EYVEGLVKIINEILDNSIDEAIRTEFKHANKIDVTIDHN---LVKISDNGRGIPQDDVK 120


>gi|156744114|ref|YP_001434243.1| DNA gyrase subunit B [Roseiflexus castenholzii DSM 13941]
 gi|156235442|gb|ABU60225.1| DNA gyrase, B subunit [Roseiflexus castenholzii DSM 13941]
          Length = 653

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 27/252 (10%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV--- 72
           +      ++E+++NS+D   A  ++ VE  I   G     + D+G+G+ +   P      
Sbjct: 49  VNGLHTMVREVVDNSVDEVMAGRATTVEVTIHEDG--SVTVADDGYGIPTGPHPKLGVST 106

Query: 73  ------QRHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAI 123
                   H   K  +    + + G  G  + ++ A+S    + +         G     
Sbjct: 107 LQVVMTVLHAGGKFDNKSYKVSS-GLHGVGVSAVNALSAYMRVDV----HNARDGMHYYQ 161

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
                     V     T        F        +++       +    R MA     + 
Sbjct: 162 EYRCGVPQCEVQKVGPTTRRGTITRF--LPDTTIIQTLDYNFKTLAQRFREMAYLNKGLR 219

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
           F F   + +  ++NF    G     +  +  +  + +      +     +     +    
Sbjct: 220 FKF-VDERDGNEINFYFEGG-IRSYVRHLNKDKNVLHKHPFYVERTIDEVMVEVALQYTE 277

Query: 244 RGNANQFYVFIN 255
             + +  Y F N
Sbjct: 278 SFDTDSVYAFAN 289


>gi|291279230|ref|YP_003496065.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
 gi|290753932|dbj|BAI80309.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
          Length = 371

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA-ESS-RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA +++  +        K     + DNG G+  E I        TSK
Sbjct: 278 LIHNAIDAVDANGEIRIYCKQEEKFDVIVVEDNGCGIDEEFIKKIFIPFHTSK 330


>gi|238897993|ref|YP_002923673.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465751|gb|ACQ67525.1| DNA topoisomerase IV, subunit B [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 632

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 23/218 (10%)

Query: 21  ERPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D A   ++ R++  +        +++DNG GM      EE    I
Sbjct: 31  TRPNHLAQEVIDNSVDEALEGKARRIDVTVYPD--HSLKVSDNGRGMPVDLHPEEQVPAI 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+   +  + G  G  L  + A+S  L +  +              +
Sbjct: 89  ELILSRLHAGGKFSNKNYH-FSGGLHGVGLSVVNALSLRLEVTVKRGGQIYRIAFEKGNK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
                                +       +F  +     + ++ +++  A+  P +   F
Sbjct: 148 TEDLEIIGTCAQRDTGTCVHFW----PDASFFDTPHFSISRLSHLLKAKAVLCPSLQIVF 203

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
               +N  +             + + +G          
Sbjct: 204 KNELNNTEQ--RWCYEDGLKHYLIETLGASVTLPKFPF 239


>gi|77462680|ref|YP_352184.1| sensor histidine kinase [Rhodobacter sphaeroides 2.4.1]
 gi|77387098|gb|ABA78283.1| Sensor Histidine kinase [Rhodobacter sphaeroides 2.4.1]
          Length = 587

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA     S +++ V+A G  +   + DNG G+  E++    +   T
Sbjct: 477 RLEQVIINLLRNALDATKIVPSPQIDLVLAAGETATLTVRDNGHGI--EDLDNLFEPFYT 534

Query: 78  SK 79
           +K
Sbjct: 535 TK 536


>gi|332799756|ref|YP_004461255.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697491|gb|AEE91948.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 345

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 31  IENSLD---AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           ++N+LD   A S ++              I DNG G+  E+I    +R   S+ S D   
Sbjct: 246 VKNALDHTNAGS-QITVEWKKLPAVIQITIKDNGSGIHPEDIHHIFKRFYRSRFSKDTQG 304

Query: 87  IH 88
           I 
Sbjct: 305 IG 306


>gi|295675339|ref|YP_003603863.1| histidine kinase [Burkholderia sp. CCGE1002]
 gi|295435182|gb|ADG14352.1| histidine kinase [Burkholderia sp. CCGE1002]
          Length = 698

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+   +  G  +    + DNG G+  + +P   +   
Sbjct: 578 RLEQVLINLLGNALDATAGMNPPRITVEVEAGAANLSIAVGDNGPGIPDDVLPHLFEPFF 637

Query: 77  TSK 79
           T+K
Sbjct: 638 TTK 640


>gi|255263320|ref|ZP_05342662.1| C4-dicarboxylate transport sensor protein DctB [Thalassiobium sp.
           R2A62]
 gi|255105655|gb|EET48329.1| C4-dicarboxylate transport sensor protein DctB [Thalassiobium sp.
           R2A62]
          Length = 589

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N+LDA  ++      ++ ++A G  +   + DNG G+  +++    +  
Sbjct: 475 RLEQVIINLLRNALDA--TKGLEDPKIDIILAAGETATLTVRDNGQGI--DDLDNLFEPF 530

Query: 76  CTSK 79
            T+K
Sbjct: 531 YTTK 534


>gi|325978699|ref|YP_004288415.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|325178627|emb|CBZ48671.1| DNA gyrase subunit B [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 620

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I         + D+G G+  +
Sbjct: 21 EIVDNSIDEALAGFATHIEVFIEKD--DSITVVDDGRGIPVD 60


>gi|288905669|ref|YP_003430891.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
 gi|288732395|emb|CBI13967.1| DNA gyrase subunit B [Streptococcus gallolyticus UCN34]
          Length = 650

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I         + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIEVFIEKD--DSITVVDDGRGIPVD 90


>gi|306833889|ref|ZP_07467013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          bovis ATCC 700338]
 gi|304423890|gb|EFM27032.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          bovis ATCC 700338]
          Length = 650

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I         + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIEVFIEKD--DSITVVDDGRGIPVD 90


>gi|193076403|gb|ABO11072.2| DNA mismatch repair enzyme [Acinetobacter baumannii ATCC 17978]
          Length = 704

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQ--ITDNGFGMTS 65
          AI ELI NS+DA ++++   +    K   Q  I D+G G T 
Sbjct: 29 AIVELIMNSIDANATQINIKLWLNAKKHLQFEIIDDGKGFTK 70


>gi|268563859|ref|XP_002647030.1| C. briggsae CBR-MORC-1 protein [Caenorhabditis briggsae]
 gi|187036440|emb|CAP24421.1| CBR-MORC-1 protein [Caenorhabditis briggsae AF16]
          Length = 870

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 25  IAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQ 73
            AI EL++NS DA +++V   +      +  +I DNG G++ +E+   ++
Sbjct: 53  TAIAELVDNSYDANATKVLISLENKFPNNQIRICDNGTGLSRQEVLNIIK 102


>gi|330834338|ref|YP_004409066.1| DNA topoisomerase VI subunit B [Metallosphaera cuprina Ar-4]
 gi|329566477|gb|AEB94582.1| DNA topoisomerase VI subunit B [Metallosphaera cuprina Ar-4]
          Length = 531

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 24 SIAIKELIENSLDAESS-------RVETVIAGGGKS----FFQITDNGFGMTSEEIPMAV 72
            A++EL+EN+LDA  +        ++ ++    +        + DNG G+    +P A 
Sbjct: 33 YQALRELVENALDA--TDIHQILPSIKIIVERTSQEKEIYRLSVEDNGIGIPPHVVPDAF 90

Query: 73 QR-HCTSK 79
           R   +SK
Sbjct: 91 GRVLYSSK 98


>gi|167751360|ref|ZP_02423487.1| hypothetical protein EUBSIR_02346 [Eubacterium siraeum DSM 15702]
 gi|167655606|gb|EDR99735.1| hypothetical protein EUBSIR_02346 [Eubacterium siraeum DSM 15702]
          Length = 635

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           + ELI N+ DAE+  V   I        ++ D+G GM  + + 
Sbjct: 34 VLAELIANAYDAEAENVYIFIDE---QEIRVEDDGNGMDPDSLD 74


>gi|139439626|ref|ZP_01773039.1| Hypothetical protein COLAER_02066 [Collinsella aerofaciens ATCC
           25986]
 gi|133774967|gb|EBA38787.1| Hypothetical protein COLAER_02066 [Collinsella aerofaciens ATCC
           25986]
          Length = 361

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 20  IERPSIAIKELIENSLDAESSRVET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           I+     + E++ N+ DA + +V        G       DNG G+  +          TS
Sbjct: 47  IQHVEDIVIEMLRNARDAGADKVYLATTKEDGVRTLVFLDNGSGVPQDMQERIFDARVTS 106

Query: 79  KISD---DFSNIHTFGFRGEALPSI 100
           K+     D   +H  G RG AL SI
Sbjct: 107 KLESMKMDRWGVH--G-RGMALFSI 128


>gi|293400051|ref|ZP_06644197.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306451|gb|EFE47694.1| DNA gyrase, B subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 648

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  I        ++ DNG GM 
Sbjct: 57 EIVDNSIDEALAGFATDIDIAIEKDNI--IRVEDNGRGMP 94


>gi|291278720|ref|YP_003495555.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
 gi|290753422|dbj|BAI79799.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
          Length = 431

 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 30  LIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+L   D E+ ++E         S   I DNG G++ E++P   +R   SK
Sbjct: 338 LIENALKAVDKENGKIEIFAYDENNMSKIIIKDNGCGISDEDLPYIFERFF-SK 390


>gi|106734167|gb|ABF82560.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 3  VREIVDNSIDEALAGYCDTIKVTIESG--NSILVEDNGRGIPVD 44


>gi|330959492|gb|EGH59752.1| hypothetical protein PMA4326_13154 [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 588

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGM-TSEEIPMAVQ 73
          A+ EL+ NS+DA ++RV+      G   F + D+G G    +EI M  +
Sbjct: 30 AVVELVMNSIDAGATRVDLNFKEDGT--FTVKDSGRGFADRKEIEMFFE 76


>gi|294776806|ref|ZP_06742269.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294449282|gb|EFG17819.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 862

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          EL++NS DA +++VE            I DNG GM+  ++ 
Sbjct: 30 ELVKNSYDAYATKVEITFCN---DKIIIADNGKGMSFNDLK 67


>gi|291543406|emb|CBL16515.1| DNA gyrase subunit B [Ruminococcus sp. 18P13]
          Length = 649

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + ++  I  G     ++TDNG G+ 
Sbjct: 48 VYEIVDNSIDEALAGYCTHIQVEILPG--DIIRVTDNGRGIP 87


>gi|32490765|ref|NP_871019.1| hypothetical protein WGLp016 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165971|dbj|BAC24162.1| gyrB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 803

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A    ++   I         + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGFCKKIIVTIHED--KSISVEDDGRGIPVDIHEEEGISAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  +D   + + G  G  +  + A+S  L L +         Q    G     ++ +
Sbjct: 100 AGGKFDNDSYKV-SGGLHGVGISVVNALSEKLEL-TIYRNGKEYNQNYNFGSPCFPLKKI 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T  ++R      P    F K+ + +  ++   +  ++     +S     IK+N+ 
Sbjct: 158 GKSRKTGTKIRF----WPNLSIFKKNIEFQYEILFKRLMELSFLNSNISIYLIDIKNNKN 213

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           K            +          +N     ++ ++I ++       +N G       F 
Sbjct: 214 KHFHYEGGIKEFVKYLHKNKNPIHSNMFYFIKEKDKILVEIAL---QWNDGFKENINCFT 270

Query: 255 NG 256
           N 
Sbjct: 271 NN 272


>gi|332983368|ref|YP_004464809.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332701046|gb|AEE97987.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 535

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 9/54 (16%)

Query: 30  LIENSL-----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           L++N+L     D   S++   +    GK  FQ++DNG G+  EE+P    R  T
Sbjct: 425 LLDNALKYTLPD---SKINVSVKKEDGKVMFQVSDNGPGIPEEELPFIFNRFYT 475


>gi|170728515|ref|YP_001762541.1| DNA topoisomerase IV subunit B [Shewanella woodyi ATCC 51908]
 gi|169813862|gb|ACA88446.1| DNA topoisomerase IV, B subunit [Shewanella woodyi ATCC 51908]
          Length = 631

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 25/184 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +++++ ++     +  ++ D+G GM      EE    +
Sbjct: 33  TRPNHLGQEVIDNSVDEALAGHATKIDVILHKD--NSLEVIDDGRGMPIDIHPEEGIPGV 90

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQ--NNTGAQIAIS 124
            + + + H   K S+D     + G  G  +  + A+S  + +  R      +   +    
Sbjct: 91  ELILTKLHAGGKFSNDNYQ-FSGGLHGVGISVVNALSNRVEITVRRNGLVYDMAFEH-GD 148

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
             +  +         T   V   F+  P+   +  S       +T ++R  A+  P +  
Sbjct: 149 KVEDLTETGTCGRRNTGTRVH--FWPTPS---YFDSANFSIPKLTYLLRAKAVLCPGLKI 203

Query: 185 TFST 188
            F  
Sbjct: 204 KFVN 207


>gi|225619544|ref|YP_002720801.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
 gi|10644698|gb|AAG21374.1|AF288224_1 DNA Gyrase B subunit [Brachyspira hyodysenteriae]
 gi|225214363|gb|ACN83097.1| D Gyrase B subunit [Brachyspira hyodysenteriae WA1]
          Length = 636

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 37/220 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA---------VQ 73
           + E+++NS+D   A     +   I  G     Q+ D+G G+  +  P            +
Sbjct: 41  VYEVVDNSIDEAMAGYCKNITVTIKKGNI--IQVEDDGRGIPVDMHPKLKISALEVVMTK 98

Query: 74  RHCTSKISDDFSNIHTFGFRG------EALPS--IGAVSHLTLMSRPPQNNTGAQIAISG 125
            H   K  ++   + + G  G       AL +  I  V                Q+   G
Sbjct: 99  LHAGGKFDNETYKV-SGGLHGVGVSVVNALSTELIAEV--------NKDGKLYRQVYHRG 149

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                V+ V  +  T   V        A     ++   +  ++ + +R +A     +  T
Sbjct: 150 IPEEPVKEVGTSKKTGTTVT-----FKADDEIFETTVYDYKILANRLRELAFLNRGIRIT 204

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELN 225
               +      N     G     I+ +       +   + 
Sbjct: 205 LKDEREAEVVSNEFYYEGGIEMFITHLNENKKALHDKPIY 244


>gi|25395740|pir||H88451 protein ZC155.3 [imported] - Caenorhabditis elegans
          Length = 1210

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           P  AI EL++N+ DA++  +         + F ++ D+G GM  EE   A+    ++K S
Sbjct: 398 PLSAIAELVDNAYDADARDLHIDFLDINNEQFLELRDDGLGMAREEALHAITFGHSAKCS 457

Query: 82  DDFSNIHTFG 91
                I  +G
Sbjct: 458 ---YKIGRYG 464


>gi|326384015|ref|ZP_08205698.1| ATP-binding region ATPase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197175|gb|EGD54366.1| ATP-binding region ATPase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 474

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R +  ++ L+ N++     DA    ++  +          + D+G GMT+E+     +R 
Sbjct: 350 RLTQVVRNLVGNAVAHAGPDA---HIQVSVESAPTEVRVTVADDGPGMTAEDAEHVFERF 406

Query: 76  C 76
            
Sbjct: 407 Y 407


>gi|24375387|ref|NP_719430.1| DNA topoisomerase IV subunit B [Shewanella oneidensis MR-1]
 gi|24350217|gb|AAN56874.1|AE015822_6 DNA topoisomerase IV, B subunit [Shewanella oneidensis MR-1]
          Length = 628

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIEVVLHTD--NSLEVTDDGRGMPVDIHPEEGIPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 88  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFENGFK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            E++         N GT V             ++  S     + +  ++R  A+  P + 
Sbjct: 147 VEELKVTGTCGRRNTGTRVHFW-------PDTSYFDSPNFSNSKLIYLLRAKAVLCPGLR 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
             F+    +  +++         + +   +G++ +
Sbjct: 200 IKFTN--KHTNEVHEWYYESGLTDYLKAAVGDNIM 232


>gi|257388768|ref|YP_003178541.1| DNA topoisomerase VI subunit B [Halomicrobium mukohataei DSM 12286]
 gi|257171075|gb|ACV48834.1| DNA topoisomerase VI, B subunit [Halomicrobium mukohataei DSM
           12286]
          Length = 807

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 23  PSIAIKELIENSLD----AESS-RVETVIAGGG--KSFFQITDNGFGMTSEEIPMAV 72
              A+KE ++N+LD    A  +  +   I   G       + DNG G+T E+IP   
Sbjct: 47  LVTAVKEAVDNALDACEEAGITPDIYVEIQEAGDYYRLI-VEDNGPGITREQIPNIF 102


>gi|153822537|ref|ZP_01975204.1| putative DNA mismatch repair protein [Vibrio cholerae B33]
 gi|229509249|ref|ZP_04398734.1| hypothetical protein VCE_000649 [Vibrio cholerae B33]
 gi|229608829|ref|YP_002879477.1| hypothetical protein VCD_003751 [Vibrio cholerae MJ-1236]
 gi|255744124|ref|ZP_05418077.1| putative DNA mismatch repair protein [Vibrio cholera CIRS 101]
 gi|126519955|gb|EAZ77178.1| putative DNA mismatch repair protein [Vibrio cholerae B33]
 gi|229353821|gb|EEO18757.1| hypothetical protein VCE_000649 [Vibrio cholerae B33]
 gi|229371484|gb|ACQ61907.1| hypothetical protein VCD_003751 [Vibrio cholerae MJ-1236]
 gi|255738064|gb|EET93456.1| putative DNA mismatch repair protein [Vibrio cholera CIRS 101]
 gi|259156238|gb|ACV96185.1| putative DNA mismatch repair protein [Vibrio cholerae Ban5]
 gi|259156428|gb|ACV96373.1| putative DNA mismatch repair protein [Vibrio cholerae Ind5]
          Length = 672

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 33 NSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIP 69
          N LDA +S ++ +I     GG    +I DNG G+    + 
Sbjct: 35 NGLDAGASDIDVIINTCDLGGVESIEIHDNGEGIDFHNLD 74


>gi|15921560|ref|NP_377229.1| DNA topoisomerase VI subunit B [Sulfolobus tokodaii str. 7]
 gi|28380202|sp|Q971T2|TOP6B_SULTO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|15622346|dbj|BAB66338.1| 532aa long hypothetical type II DNA topoisomerase VI subunit B
           [Sulfolobus tokodaii str. 7]
          Length = 532

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 34/196 (17%)

Query: 22  RPSIA----IKELIENSLDAE-------SSRVETVIAGGGKS--FFQITDNGFGMTSEEI 68
            P+ A    ++EL+EN+LDA        S ++   +    K      + DNG G+    +
Sbjct: 26  NPARALYQTVRELVENALDATDVHNILPSIKIIIELVDPQKQIYKVNVEDNGIGIPPHIV 85

Query: 69  PMAVQR-HCTSKISDDFSNIH-TFGFRGEALPSIGAV--SH------LTLMSRPPQNNTG 118
           P A  +   +SK           +G     L    AV  S       + +++ P  +   
Sbjct: 86  PNAFGKVLYSSKYV--LRQTRGMYG-----LGVKAAVLYSQMYQERPVEVVTSPINSK-- 136

Query: 119 AQIAISGEKISSVRPVAMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
            +I     KI  V+   +    T V     +      L      Q     I + +++  I
Sbjct: 137 -RIYFFKLKIDVVKNEPIILQKTSVVNEKNWHGTSVTLYLYADWQRAKQKIYEYVKKTYI 195

Query: 178 AYPKVSFTFSTIKSNR 193
             P   F F    +N 
Sbjct: 196 ISPYAEFFFKDPDNNV 211


>gi|311896966|dbj|BAJ29374.1| hypothetical protein KSE_35690 [Kitasatospora setae KM-6054]
          Length = 490

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMA 71
              A+ +L++NS+ AE+  ++      G  ++  + D+G GM+  ++  A
Sbjct: 23 SLPAAVADLVDNSISAEAVEIDVDFTWAGSETWISVADDGTGMSPAKLATA 73


>gi|289628211|ref|ZP_06461165.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649101|ref|ZP_06480444.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330870078|gb|EGH04787.1| DNA gyrase subunit B [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 805

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|114046852|ref|YP_737402.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-7]
 gi|113888294|gb|ABI42345.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-7]
          Length = 360

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S A+  L+ NSL+A +++++ V    G+     + DNG G+ ++     ++   T+K
Sbjct: 249 LSSAVNNLVMNSLEAGATQIQIVANDVGEQLALNVVDNGKGLDAKMQQKVLEPFFTTK 306


>gi|325272721|ref|ZP_08139074.1| hypothetical protein G1E_07233 [Pseudomonas sp. TJI-51]
 gi|324102167|gb|EGB99660.1| hypothetical protein G1E_07233 [Pseudomonas sp. TJI-51]
          Length = 812

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        A+ ELI NS+DA+++ V   +   G       D+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SIGKAVIELIMNSVDAKATTVRLTMTKAGFDCV---DDGTG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            + E++     R  T
Sbjct: 60 FASREDVVRYFGRFGT 75


>gi|254453386|ref|ZP_05066823.1| periplasmic sensor signal transduction histidine kinase
           [Octadecabacter antarcticus 238]
 gi|198267792|gb|EDY92062.1| periplasmic sensor signal transduction histidine kinase
           [Octadecabacter antarcticus 238]
          Length = 567

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 16/84 (19%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N+LDA  ++      VE ++  G  +   + DNG G+  E++    +  
Sbjct: 453 RLEQVIINLLRNALDA--TKMALEPSVEILLVQGDVARLSVRDNGSGI--EDLDELFEPF 508

Query: 76  CTSKISDDFSNIHTFGFRGEALPS 99
            T+K + D + +      G A+ S
Sbjct: 509 YTTKQAGDGTGL------GLAISS 526


>gi|18313187|ref|NP_559854.1| DNA topoisomerase VI subunit B [Pyrobaculum aerophilum str. IM2]
 gi|28380201|sp|Q8ZVM0|TOP6B_PYRAE RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|18160701|gb|AAL64036.1| DNA topoisomerase VI (type II ) subunit b [Pyrobaculum aerophilum
          str. IM2]
          Length = 527

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 27 IKELIENSLDAESS-----RV--ETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR-HC 76
          I+EL ENSLDA  +      +     I    K +  +   DNG G+   EIP    R   
Sbjct: 33 IRELTENSLDATETYGILPTIYLRVNIEDEQKGWVSVYAEDNGIGIPGNEIPNVFGRVFY 92

Query: 77 TSKIS 81
          +SK  
Sbjct: 93 SSKYK 97


>gi|126175131|ref|YP_001051280.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS155]
 gi|125998336|gb|ABN62411.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS155]
          Length = 360

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++ +       G +    + DNG G+ +      ++   T+K
Sbjct: 249 LSSAINNLVMNSIEAGATEIRIQAAEEGDQLLLNVIDNGKGLDANMQQKVLEPFFTTK 306


>gi|54294650|ref|YP_127065.1| hypothetical protein lpl1727 [Legionella pneumophila str. Lens]
 gi|53754482|emb|CAH15966.1| hypothetical protein lpl1727 [Legionella pneumophila str. Lens]
          Length = 343

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    AI  LI N+L +E+++++  +      G     + DNG GM+ E    A     T
Sbjct: 237 ESLIGAILNLIINALQSEATQIDLTLASMDDSGIQ-ISVEDNGNGMSEEVRAQAFSPFYT 295

Query: 78  SK 79
           +K
Sbjct: 296 TK 297


>gi|84497090|ref|ZP_00995912.1| hypothetical protein JNB_12888 [Janibacter sp. HTCC2649]
 gi|84381978|gb|EAP97860.1| hypothetical protein JNB_12888 [Janibacter sp. HTCC2649]
          Length = 571

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGF 61
            L + ++N     + IE     ++E + NS+DA++  ++  +    G      I D+G 
Sbjct: 12 HLLRQAVLN---TSQSIE----LLREAVSNSVDADARNIDIKLTNDNGEIWNIVIQDDGN 64

Query: 62 GMT 64
          GM 
Sbjct: 65 GME 67


>gi|314935205|ref|ZP_07842558.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
 gi|313656540|gb|EFS20279.1| DNA gyrase, B subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 644

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEND--NWIKVTDNGRGIPVD 89


>gi|284989335|ref|YP_003407889.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
 gi|284062580|gb|ADB73518.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
          Length = 722

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 26 AIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSE 66
          A+ EL++N+ DA++ RV   + G    G    Q+ D+G GMT++
Sbjct: 32 AVMELVKNAYDADADRVVVRLIGPLREGTGCLQVLDDGHGMTAD 75


>gi|228474176|ref|ZP_04058913.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
 gi|228271871|gb|EEK13208.1| DNA gyrase, B subunit [Staphylococcus hominis SK119]
          Length = 640

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYANQIEVVIEND--NWIKVTDNGRGIPVD 85


>gi|108757769|ref|YP_631789.1| ATPase [Myxococcus xanthus DK 1622]
 gi|108461649|gb|ABF86834.1| ATPase [Myxococcus xanthus DK 1622]
          Length = 528

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
           LI+NS+ A +  V      GG+     + D+G GM+  E+  A++    S + +     +
Sbjct: 59  LIDNSITAGARNVWLTFHWGGEDSHITLRDDGRGMSEAELADAMRPGNRSPLDE--RAPN 116

Query: 89  TFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIA 122
             G  G  L   S      LT+ +         +  
Sbjct: 117 DLGRFGLGLKTASFSQARRLTVATLKAGGRWAIRRW 152


>gi|162454803|ref|YP_001617170.1| posible heat shock protein [Sorangium cellulosum 'So ce 56']
 gi|161165385|emb|CAN96690.1| posible heat shock protein [Sorangium cellulosum 'So ce 56']
          Length = 757

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 27  IKELIENSLDA---ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL++N+LDA    + R++   +  G+    +TD G GM+  E+
Sbjct: 68  LRELLQNALDASPPGA-RIDVRSSEDGRE-ISVTDQGRGMSRTEL 110


>gi|67920055|ref|ZP_00513575.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
 gi|67857539|gb|EAM52778.1| DNA gyrase, B subunit [Crocosphaera watsonii WH 8501]
          Length = 642

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TDNG G+ ++
Sbjct: 41 VYEVVDNSIDEALAGYCTHIEIDINADG--SITVTDNGRGIPTD 82


>gi|148359307|ref|YP_001250514.1| sensor kinase HydH [Legionella pneumophila str. Corby]
 gi|296107354|ref|YP_003619054.1| sensor kinase HydH [Legionella pneumophila 2300/99 Alcoy]
 gi|148281080|gb|ABQ55168.1| sensor kinase HydH [Legionella pneumophila str. Corby]
 gi|295649255|gb|ADG25102.1| sensor kinase HydH [Legionella pneumophila 2300/99 Alcoy]
 gi|307610462|emb|CBX00033.1| hypothetical protein LPW_17891 [Legionella pneumophila 130b]
          Length = 340

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    AI  LI N+L +E+++++  +      G     + DNG GM+ E    A     T
Sbjct: 234 ESLIGAILNLIINALQSEATQIDLTLASMDDSGIQ-ISVEDNGNGMSEEVRAQAFSPFYT 292

Query: 78  SK 79
           +K
Sbjct: 293 TK 294


>gi|329767180|ref|ZP_08258707.1| DNA gyrase subunit B [Gemella haemolysans M341]
 gi|328836847|gb|EGF86494.1| DNA gyrase subunit B [Gemella haemolysans M341]
          Length = 638

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I  G  ++ ++ DNG G+  +
Sbjct: 46 EIVDNSIDEALAGYCDTITVAIEKG--NWIRVEDNGRGIPVD 85


>gi|193216448|ref|YP_001999690.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1]
 gi|193001771|gb|ACF06986.1| topoiosmerase IV subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 637

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 81/250 (32%), Gaps = 26/250 (10%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEI 68
           I      + E+++N+LD   A  ++ ++  +         + DNG G+           +
Sbjct: 31  ITGLHHLVWEIVDNALDEALAGFATDIKVTLKKD--DSVIVEDNGRGIPVSKHGSGKTGV 88

Query: 69  PMAV-QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            +   + H   K  +      + G  G     + A+S   L+ +  ++    +     +K
Sbjct: 89  ELVFTELHAGGKFDEGVYK-TSGGLHGVGSSVVNALSE-KLIVKVYRDKKEYKTVFEQDK 146

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
           I     V             +          K  +  ++++ + +R  +   P +   F+
Sbjct: 147 IIEGTNVVGPTTKHGTKVQFW----PDKTIFKKTKFSSDIVKEKLREASFLIPNLKIHFN 202

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
             +S               E I  V  G++FI++         +I ++       +    
Sbjct: 203 HEESGEA--ITFEAAEGIKEYIKFVGEGKNFISSIFYAKGTFKKIEMEIAL---VYTDNY 257

Query: 247 ANQFYVFING 256
               Y F+N 
Sbjct: 258 TENIYSFVNN 267


>gi|4099111|gb|AAD00550.1| topoisomerase II ParE [Mycoplasma arthritidis]
          Length = 614

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 81/250 (32%), Gaps = 26/250 (10%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEI 68
           I      + E+++N+LD   A  ++ ++  +         + DNG G+           +
Sbjct: 8   ITGLHHLVWEIVDNALDEALAGFATDIKVTLKKD--DSVIVEDNGRGIPVSKHGSGKTGV 65

Query: 69  PMAV-QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            +   + H   K  +      + G  G     + A+S   L+ +  ++    +     +K
Sbjct: 66  ELVFTELHAGGKFDEGVYK-TSGGLHGVGSSVVNALSE-KLIVKVYRDKKEYKTVFEQDK 123

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
           I     V             +          K  +  ++++ + +R  +   P +   F+
Sbjct: 124 IIEGTNVVGPTTKHGTKVQFW----PDKTIFKKTKFSSDIVKEKLREASFLIPNLKIHFN 179

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
             +S               E I  V  G++FI++         +I ++       +    
Sbjct: 180 HEESGEA--ITFEAAEGIKEYIKFVGEGKNFISSIFYAKGTFKKIEMEIAL---VYTDNY 234

Query: 247 ANQFYVFING 256
               Y F+N 
Sbjct: 235 TENIYSFVNN 244


>gi|24940620|gb|AAN65247.1|AF329398_37 clorobiocin-resistant gyrase B [Streptomyces roseochromogenes
          subsp. oscitans]
          Length = 572

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++EL++NS+D   A  + R++  I A GG    ++ DNG G+ 
Sbjct: 60 VQELVDNSVDEALAGVADRIDVTILADGG---VRVVDNGRGIP 99


>gi|28627816|gb|AAN75468.1| DNA gyrase subunit B [Streptomyces roseochromogenes subsp.
          oscitans]
          Length = 677

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++EL++NS+D   A  + R++  I A GG    ++ DNG G+ 
Sbjct: 60 VQELVDNSVDEALAGVADRIDVTILADGG---VRVVDNGRGIP 99


>gi|224477952|ref|YP_002635558.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
          TM300]
 gi|222422559|emb|CAL29373.1| DNA gyrase subunit B [Staphylococcus carnosus subsp. carnosus
          TM300]
          Length = 640

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E +I     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYADKIEVIIEKD--NWIRVTDNGRGIPVD 85


>gi|328554791|gb|AEB25283.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
          Length = 427

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESS---RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+NS++A  S   R+E  +         QITDNG GM+ +E+    + + T K
Sbjct: 331 LIKNSIEAVPSENGRIEVSVQKQEQMILIQITDNGIGMSDDELQKLGKPYYTLK 384


>gi|308174836|ref|YP_003921541.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607700|emb|CBI44071.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328913148|gb|AEB64744.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 425

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESS---RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+NS++A  S   R+E  +         QITDNG GM+ +E+    + + T K
Sbjct: 329 LIKNSIEAVPSENGRIEVSVQKQEQMILIQITDNGIGMSDDELQKLGKPYYTLK 382


>gi|312864604|ref|ZP_07724835.1| DNA gyrase, B subunit [Streptococcus downei F0415]
 gi|311099731|gb|EFQ57944.1| DNA gyrase, B subunit [Streptococcus downei F0415]
          Length = 650

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I         + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVFIEED--DSITVVDDGRGIPVD 90


>gi|145296602|ref|YP_001139423.1| hypothetical protein cgR_2510 [Corynebacterium glutamicum R]
 gi|140846522|dbj|BAF55521.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 485

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 13/78 (16%)

Query: 9   KIINQIAAGEIIE----RPSIAIKELIENSL-----DAESSRVETVIAGGGKS-FFQITD 58
            + N+ A+  ++E    R    +  L+ N L     DA    V   I   G++    + D
Sbjct: 360 NVSNKAASIPVVEGDPTRLHQVLTNLVANGLNHGGPDA---EVSIEINTDGQNVKILVAD 416

Query: 59  NGFGMTSEEIPMAVQRHC 76
           NG GM+ E+     +R  
Sbjct: 417 NGVGMSEEDAQHIFERFY 434


>gi|270159559|ref|ZP_06188215.1| sensor histidine kinase FleS [Legionella longbeachae D-4968]
 gi|289165645|ref|YP_003455783.1| sensor histidine kinase [Legionella longbeachae NSW150]
 gi|269987898|gb|EEZ94153.1| sensor histidine kinase FleS [Legionella longbeachae D-4968]
 gi|288858818|emb|CBJ12732.1| putative sensor histidine kinase [Legionella longbeachae NSW150]
          Length = 333

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    A+  L+ NSL +E++ +   +      G     + DNG GMT E    A     T
Sbjct: 234 ESLLGAVLNLVINSLQSEATEINLTLASTDNSGIQ-ITVEDNGKGMTEEVKNQAFSPFYT 292

Query: 78  SK 79
           +K
Sbjct: 293 TK 294


>gi|52841990|ref|YP_095789.1| sensor kinase HydH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629101|gb|AAU27842.1| sensor kinase HydH [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 343

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    AI  LI N+L +E+++++  +      G     + DNG GM+ E    A     T
Sbjct: 237 ESLIGAILNLIINALQSEATQIDLTLASMDDSGIQ-ISVEDNGNGMSEEVRAQAFSPFYT 295

Query: 78  SK 79
           +K
Sbjct: 296 TK 297


>gi|330812561|ref|YP_004357023.1| incomplete histidine kinase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380669|gb|AEA72019.1| putative incomplete histidine kinase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 424

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 18/78 (23%)

Query: 30  LIENS---LDAESSR-----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           LI N+   LDA ++R     +   +   G+   ++ DNG G++ + +    +   T    
Sbjct: 314 LINNAKQALDAGANRPPQIILRLKVVDEGRVRVEVEDNGEGISQDNLARVFEHGFT---- 369

Query: 82  DDFSNIHTFGFRGEALPS 99
              + +   GF    L S
Sbjct: 370 ---TRVDGHGF---GLHS 381


>gi|296178610|dbj|BAJ07688.1| DNA gyrase B [Kosmotoga arenicorallina]
          Length = 538

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 77/244 (31%), Gaps = 26/244 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---EIPMAVQR----- 74
           + E+++NS+D   A    ++E  I   G    ++ DNG G+  +   +   +        
Sbjct: 10  VYEVVDNSIDEVVAGFCDQIEVTIFEDGT--VRVMDNGRGIPVDVHPDTGTSALEVVMTT 67

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR 132
            H   K S D   I + G  G  +  + A+S  L +                 E+   V 
Sbjct: 68  LHAGGKFSKDSYKI-SGGLHGVGVSVVNALSEWLEVKVHREGE----IYRQRYERGIPVT 122

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
           PV +   T     + +F          +   + +++   +R +A   P V   F      
Sbjct: 123 PVEIIGKTDKRGTETWFK--PDKLVFTTTDFDFDILESRLRELAFLNPSVRIIF--EDKR 178

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             +       G   E +  +  +    N      +     ++    +  +          
Sbjct: 179 INEKRAFHFEGGISEFVKFMNRKKTAINKEPYYIEGTFNDIKVQLAL-QYTTSFEEHILT 237

Query: 253 FING 256
           F+N 
Sbjct: 238 FVNN 241


>gi|261253833|ref|ZP_05946406.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891]
 gi|260937224|gb|EEX93213.1| topoisomerase IV subunit B [Vibrio orientalis CIP 102891]
          Length = 626

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 25/206 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
           ERP+   +E+I+NS+D   A  + +++ ++        ++ D+G GM  +          
Sbjct: 30  ERPNHLAQEVIDNSVDEALAGHAKKIKVILHAD--QSLEVIDDGRGMPVDIHPEKGISGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
           E+ +  + H   K S+D     + G  G  +  + A+S  + +  R              
Sbjct: 88  EL-IMTKLHAGGKFSNDNYK-FSGGLHGVGISVVNALSKRVEVTVRRGGEIHEIAFEGGN 145

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                                 +        +  S +     + + +R  A+  P +  T
Sbjct: 146 AVTELTVTGTCGHRNTGTAVHFW----PDEKYFDSYKFSALRLVNNLRAKAVLCPGLEIT 201

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQ 211
           FS       + +         + +S+
Sbjct: 202 FS--DKVNNEEHKWFYEDGLKDYLSE 225


>gi|259047900|ref|ZP_05738301.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
 gi|259035577|gb|EEW36832.1| DNA gyrase, B subunit [Granulicatella adiacens ATCC 49175]
          Length = 645

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I    ++  ++TD+G G+  +
Sbjct: 49 EIVDNSIDEALAGFATHIEIEITK--ENHIRVTDDGRGIPVD 88


>gi|125577044|gb|EAZ18266.1| hypothetical protein OsJ_33803 [Oryza sativa Japonica Group]
          Length = 641

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 23  PSIAIKELIENSLD---AESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMA 71
           P  A+ EL++N++D     ++R+      G  G     + D+G GM  + +   
Sbjct: 71  PFGAVAELLDNAVDEIKTGATRIIVDKVNGCNGSPALLVQDDGGGMDPDSLRRC 124


>gi|77550701|gb|ABA93498.1| ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain
           containing protein [Oryza sativa Japonica Group]
          Length = 717

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 23  PSIAIKELIENSLD---AESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMA 71
           P  A+ EL++N++D     ++R+      G  G     + D+G GM  + +   
Sbjct: 147 PFGAVAELLDNAVDEIKTGATRIIVDKVNGCNGSPALLVQDDGGGMDPDSLRRC 200


>gi|42567122|ref|NP_194227.2| ATP-binding region, ATPase-like domain-containing protein
           [Arabidopsis thaliana]
 gi|332659583|gb|AEE84983.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 707

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD---AESSRVETV-IAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD   + ++ V+   +    GG     I DNG GM  E++   +    +  SK+
Sbjct: 185 ELLDNALDEVASGATYVKVDMLENNKGGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKL 244

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 245 AN---TIGQYG 252


>gi|319952610|ref|YP_004163877.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
 gi|319421270|gb|ADV48379.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
          Length = 382

 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N +DA      +   I   G  +   ++D G G+  ++         TSK
Sbjct: 287 LVKNGIDAMRGKGSISVEILKEGNNAVILVSDTGHGILKKDFNTIFNPGFTSK 339


>gi|312793478|ref|YP_004026401.1| histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312876007|ref|ZP_07735996.1| histidine kinase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797205|gb|EFR13545.1| histidine kinase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180618|gb|ADQ40788.1| histidine kinase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 185

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS++A +S V+  IA   K       I DNG G+  + I        T
Sbjct: 11 LVQNSIEAGASLVKIEIAEDLKEDLFTITIEDNGRGIPQDVIDKVTDPFYT 61


>gi|220929648|ref|YP_002506557.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999976|gb|ACL76577.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 188

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 31 IENSLDAESSRVETVIA-GGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          ++NS+ A++++++  I+    +      ++DNG GM S+ +  A     TS+I+
Sbjct: 12 VQNSITAQATKIKIHISIDSQRDYLLLNVSDNGAGMDSDLLLKAQDPFFTSRIT 65


>gi|299470955|emb|CBN79939.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 562

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 26  AIKELIENSLDA-----ESSRVETVIAGGGK--SFFQITDNGFGMTSEEIP 69
           A+ EL++NS+ A         VE  +  GG+  SF  + DNG GM +  + 
Sbjct: 81  AVAELVDNSIQATTDNPGPRTVEIEVELGGRGGSFLVVKDNGRGMNAAGLK 131


>gi|54297676|ref|YP_124045.1| hypothetical protein lpp1727 [Legionella pneumophila str. Paris]
 gi|53751461|emb|CAH12879.1| hypothetical protein lpp1727 [Legionella pneumophila str. Paris]
          Length = 343

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    AI  LI N+L +E+++++  +      G     + DNG GM+ E    A     T
Sbjct: 237 ESLIGAILNLIINALQSEATQIDLTLASMDDSGIQ-ISVEDNGNGMSEEVRAQAFSPFYT 295

Query: 78  SK 79
           +K
Sbjct: 296 TK 297


>gi|330987022|gb|EGH85125.1| DNA gyrase subunit B [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 805

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQKPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|330890246|gb|EGH22907.1| DNA gyrase subunit B [Pseudomonas syringae pv. mori str. 301020]
          Length = 805

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|325278934|ref|YP_004251476.1| histidine kinase [Odoribacter splanchnicus DSM 20712]
 gi|324310743|gb|ADY31296.1| histidine kinase [Odoribacter splanchnicus DSM 20712]
          Length = 189

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 31 IENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          ++NS+ AE+S ++  I           +I DNG GM    +        TS
Sbjct: 12 VQNSIRAEASWIQIRICEDPEADLFLIEIQDNGCGMDEATLARVRDPFFTS 62


>gi|320321691|gb|EFW77790.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. B076]
          Length = 807

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|298484612|ref|ZP_07002717.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298160869|gb|EFI01885.1| DNA gyrase subunit B [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 805

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|257485596|ref|ZP_05639637.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 805

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|71735115|ref|YP_272319.1| DNA gyrase subunit B [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555668|gb|AAZ34879.1| DNA gyrase, B subunit [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320331107|gb|EFW87078.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330881905|gb|EGH16054.1| DNA gyrase subunit B [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 805

 Score = 50.4 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|268318257|ref|YP_003291976.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
 gi|262335791|gb|ACY49588.1| DNA gyrase, B subunit [Rhodothermus marinus DSM 4252]
          Length = 649

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 14/67 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E+++N++D   A    R+   I   G     + DNG G+  +E       H T K   
Sbjct: 45  VYEVVDNAIDEAMAGYCDRIAVTINEDG--SITVEDNGRGIPVDE-------HPTEK-RS 94

Query: 83  DFSNIHT 89
               + T
Sbjct: 95  ALEVVMT 101


>gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 568

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 30  LIENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++    D   + +          ++ ++ DNG G+  E++P   +R  
Sbjct: 463 LVENAIKYSND--KTLISIRTYDINDYTYIEVEDNGIGIPKEDLPRIFERFY 512


>gi|225019466|ref|ZP_03708658.1| hypothetical protein CLOSTMETH_03419 [Clostridium methylpentosum
           DSM 5476]
 gi|224947795|gb|EEG29004.1| hypothetical protein CLOSTMETH_03419 [Clostridium methylpentosum
           DSM 5476]
          Length = 632

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA               +SR    +E  +    K    +TDNG GMT +E+
Sbjct: 29  LRELISNASDALDKLYFRSLTDDSVAASREDLKIELSVDK-EKRTLTVTDNGLGMTKDEL 87

Query: 69  PMAVQRHCTS-----K----ISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQNN 116
              +     S     K    + +D   I  F  GF      S   VS  +T++SR     
Sbjct: 88  ENNLGTIAKSGSLNFKKENELKEDVDIIGQFGVGF-----YSAFMVSERVTVISRAFGEK 142

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
              +    G +  ++ P          +  +             E +E   I  +I++ +
Sbjct: 143 EAWKWESEGAEGYTIEPCDKASWGTQIILTIKQNTE---EDNYDEFLEQYRIQSIIKKYS 199


>gi|167647928|ref|YP_001685591.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167350358|gb|ABZ73093.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 526

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           L+ENS  A +  V  V    G+    +++D+G G+   +     +   TS
Sbjct: 434 LVENSRQAGARTVRIVARVVGEEVVLRVSDDGPGVPPADRDRLFEPFFTS 483


>gi|313141108|ref|ZP_07803301.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|313133618|gb|EFR51235.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
          Length = 694

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  ++ +E  I    G    ++ D+G G+  +E+P
Sbjct: 70  VYEIVDNSVDEALAGYATHIEVTILPDNG---IRVVDDGRGIPVDEVP 114


>gi|302392560|ref|YP_003828380.1| histidine kinase [Acetohalobium arabaticum DSM 5501]
 gi|302204637|gb|ADL13315.1| histidine kinase [Acetohalobium arabaticum DSM 5501]
          Length = 185

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS+ AE++ V   I       K    I DNG G++ E +   +    T
Sbjct: 11 LVQNSIKAEATEVRIEIIEDLTADKMKILIIDNGQGISEEFLEDVLDPFTT 61


>gi|224283956|ref|ZP_03647278.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|310286525|ref|YP_003937783.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|311063464|ref|YP_003970189.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|309250461|gb|ADO52209.1| gyrB1 DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|310865783|gb|ADP35152.1| gyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
          Length = 720

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  ++ +E  I    G    ++ D+G G+  +E+P
Sbjct: 96  VYEIVDNSVDEALAGYATHIEVTILPDNG---IRVVDDGRGIPVDEVP 140


>gi|183602673|ref|ZP_02964037.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682504|ref|YP_002468887.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190071|ref|YP_002967465.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195477|ref|YP_002969032.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218091|gb|EDT88738.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620154|gb|ACL28311.1| DNA gyrase, B subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248463|gb|ACS45403.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250031|gb|ACS46970.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177774|gb|ADC85020.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793058|gb|ADG32593.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9]
          Length = 705

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  ++ +E  I    G    ++ D+G G+  +E+P
Sbjct: 80  VYEIVDNSVDEALAGYATHIEVTILPDNG---IRVVDDGRGIPVDEVP 124


>gi|89093821|ref|ZP_01166767.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
 gi|89081951|gb|EAR61177.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
          Length = 742

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA--E--SSRVETVIAGGGKSFF--QITDNGFGMTSEEIPMAVQRH 75
           R    +  LI N+L A     +  V+  +   GK+    Q+ D G G+  E++    +  
Sbjct: 625 RLEQVLVNLISNALQAMEGHPAPAVDVTLEQ-GKTLICLQVRDYGSGIPEEDLGRVFEPF 683

Query: 76  CTSK 79
            T+K
Sbjct: 684 YTTK 687


>gi|330961508|gb|EGH61768.1| DNA gyrase subunit B [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 805

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|194099465|ref|YP_002002585.1| hypothetical protein NGK_1960 [Neisseria gonorrhoeae NCCP11945]
 gi|193934755|gb|ACF30579.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
          Length = 285

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 29 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 77


>gi|149910059|ref|ZP_01898707.1| hypothetical protein PE36_23697 [Moritella sp. PE36]
 gi|149806927|gb|EDM66888.1| hypothetical protein PE36_23697 [Moritella sp. PE36]
          Length = 636

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIA------GGGKSFFQITDNGFGMTSEEIPMA 71
           R    +  LI N++DA      S++   ++        G     + DNG G+ +E++P  
Sbjct: 523 RLEQVLVNLISNAIDAVEHHRESQITITVSSTLTSTRLGNIEITVKDNGSGILAEDLPHI 582

Query: 72  VQRHCT 77
                T
Sbjct: 583 FDPFYT 588


>gi|125534268|gb|EAY80816.1| hypothetical protein OsI_35996 [Oryza sativa Indica Group]
          Length = 715

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 23  PSIAIKELIENSLD---AESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMA 71
           P  A+ EL++N++D     ++R+      G  G     + D+G GM  + +   
Sbjct: 145 PFGAVAELLDNAVDEIKTGATRIIVDKVNGCNGSPALLVQDDGGGMDPDSLRRC 198


>gi|113969622|ref|YP_733415.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-4]
 gi|113884306|gb|ABI38358.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-4]
          Length = 360

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S A+  L+ NSL+A +++++ V    G+     + DNG G+ ++     ++   T+K
Sbjct: 249 LSSAVNNLVMNSLEAGATQIQIVANDIGEQLALNVVDNGKGLDAKMQQKVLEPFFTTK 306


>gi|167035402|ref|YP_001670633.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
 gi|166861890|gb|ABZ00298.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
          Length = 585

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  I   G      + D+G G+   ++        
Sbjct: 476 RLEQVLINLLRNALDAMADKRYKRLEIRIEPDGELWRLSVLDSGGGIAEADLAKVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|320547135|ref|ZP_08041431.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          equinus ATCC 9812]
 gi|320448261|gb|EFW89008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          equinus ATCC 9812]
          Length = 650

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIEVFIEKD--NSITVVDDGRGIPVD 90


>gi|171780013|ref|ZP_02920917.1| hypothetical protein STRINF_01800 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171281361|gb|EDT46796.1| hypothetical protein STRINF_01800 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 650

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIEVFIEKD--NSITVVDDGRGIPVD 90


>gi|15790023|ref|NP_279847.1| DNA topoisomerase VI subunit B [Halobacterium sp. NRC-1]
 gi|169235746|ref|YP_001688946.1| DNA topoisomerase VI subunit B [Halobacterium salinarum R1]
 gi|13124611|sp|Q9HR31|TOP6B_HALSA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|229558491|sp|B0R4D3|TOP6B_HALS3 RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|10580449|gb|AAG19327.1| DNA topoisomerase VI subunit B [Halobacterium sp. NRC-1]
 gi|167726812|emb|CAP13598.1| DNA topoisomerase (ATP-hydrolyzing) VI subunit B [Halobacterium
           salinarum R1]
          Length = 804

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 39/190 (20%)

Query: 23  PSIAIKELIENSLDAESSR-------VETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQ 73
              A+KE ++N+LDA  +        +   I+  G+ +    + DNG G+T+ +IP    
Sbjct: 48  LVTAVKEAVDNALDA--TEEAGILPDIYVEISE-GRDYYTLIVEDNGPGITNAQIPKIFG 104

Query: 74  R-------HCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTG 118
           +       H             + G +G  +    AV  S LT      + SR   + T 
Sbjct: 105 KLLYGSRFHA---------REQSRGQQGIGIS--AAVLYSQLTSGKPVRIESRTQDSETA 153

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN-LITDVIRRMAI 177
               +  +  ++   ++          DL  T   R+       +     + D I+  A+
Sbjct: 154 NVYELIIDTDTNEPEISAETEVSAAKSDLRGTHGTRIEMALDANMRARGQLHDYIKHTAV 213

Query: 178 AYPKVSFTFS 187
             P       
Sbjct: 214 VNPHARIELQ 223


>gi|294851320|ref|ZP_06791993.1| sensor protein ChvG [Brucella sp. NVSL 07-0026]
 gi|294819909|gb|EFG36908.1| sensor protein ChvG [Brucella sp. NVSL 07-0026]
          Length = 601

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|256045696|ref|ZP_05448574.1| Sensor protein chvG [Brucella melitensis bv. 1 str. Rev.1]
          Length = 589

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 473 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 530

Query: 76  CT 77
            T
Sbjct: 531 YT 532


>gi|254700723|ref|ZP_05162551.1| Sensor protein chvG [Brucella suis bv. 5 str. 513]
 gi|254707388|ref|ZP_05169216.1| Sensor protein chvG [Brucella pinnipedialis M163/99/10]
 gi|254709069|ref|ZP_05170880.1| Sensor protein chvG [Brucella pinnipedialis B2/94]
 gi|254713504|ref|ZP_05175315.1| Sensor protein chvG [Brucella ceti M644/93/1]
 gi|254716140|ref|ZP_05177951.1| Sensor protein chvG [Brucella ceti M13/05/1]
 gi|256030594|ref|ZP_05444208.1| Sensor protein chvG [Brucella pinnipedialis M292/94/1]
 gi|256060056|ref|ZP_05450238.1| Sensor protein chvG [Brucella neotomae 5K33]
 gi|256158590|ref|ZP_05456480.1| Sensor protein chvG [Brucella ceti M490/95/1]
 gi|256254001|ref|ZP_05459537.1| Sensor protein chvG [Brucella ceti B1/94]
 gi|260169500|ref|ZP_05756311.1| Sensor protein chvG [Brucella sp. F5/99]
          Length = 589

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 473 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 530

Query: 76  CT 77
            T
Sbjct: 531 YT 532


>gi|254694715|ref|ZP_05156543.1| BvrS, sensor histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|254696342|ref|ZP_05158170.1| BvrS, sensor histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731258|ref|ZP_05189836.1| BvrS, sensor histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|256258480|ref|ZP_05464016.1| BvrS, sensor histidine kinase [Brucella abortus bv. 9 str. C68]
          Length = 589

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 473 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 530

Query: 76  CT 77
            T
Sbjct: 531 YT 532


>gi|225626472|ref|ZP_03784511.1| Sensor protein chvG [Brucella ceti str. Cudo]
 gi|256370489|ref|YP_003108000.1| sensor histidine kinase BvrS, putative [Brucella microti CCM 4915]
 gi|261217911|ref|ZP_05932192.1| sensory protein BvrS [Brucella ceti M13/05/1]
 gi|261221141|ref|ZP_05935422.1| sensory protein BvrS [Brucella ceti B1/94]
 gi|261314874|ref|ZP_05954071.1| sensory protein BvrS [Brucella pinnipedialis M163/99/10]
 gi|261316568|ref|ZP_05955765.1| sensory protein BvrS [Brucella pinnipedialis B2/94]
 gi|261321239|ref|ZP_05960436.1| sensory protein BvrS [Brucella ceti M644/93/1]
 gi|261324032|ref|ZP_05963229.1| sensory protein BvrS [Brucella neotomae 5K33]
 gi|261751233|ref|ZP_05994942.1| sensory protein BvrS [Brucella suis bv. 5 str. 513]
 gi|261759026|ref|ZP_06002735.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|265987641|ref|ZP_06100198.1| sensory protein BvrS [Brucella pinnipedialis M292/94/1]
 gi|265997101|ref|ZP_06109658.1| sensory protein BvrS [Brucella ceti M490/95/1]
 gi|225618129|gb|EEH15172.1| Sensor protein chvG [Brucella ceti str. Cudo]
 gi|256000652|gb|ACU49051.1| sensor histidine kinase BvrS, putative [Brucella microti CCM 4915]
 gi|260919725|gb|EEX86378.1| sensory protein BvrS [Brucella ceti B1/94]
 gi|260923000|gb|EEX89568.1| sensory protein BvrS [Brucella ceti M13/05/1]
 gi|261293929|gb|EEX97425.1| sensory protein BvrS [Brucella ceti M644/93/1]
 gi|261295791|gb|EEX99287.1| sensory protein BvrS [Brucella pinnipedialis B2/94]
 gi|261300012|gb|EEY03509.1| sensory protein BvrS [Brucella neotomae 5K33]
 gi|261303900|gb|EEY07397.1| sensory protein BvrS [Brucella pinnipedialis M163/99/10]
 gi|261739010|gb|EEY27006.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|261740986|gb|EEY28912.1| sensory protein BvrS [Brucella suis bv. 5 str. 513]
 gi|262551569|gb|EEZ07559.1| sensory protein BvrS [Brucella ceti M490/95/1]
 gi|264659838|gb|EEZ30099.1| sensory protein BvrS [Brucella pinnipedialis M292/94/1]
          Length = 601

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|167578494|ref|ZP_02371368.1| sensor histidine kinase [Burkholderia thailandensis TXDOH]
          Length = 459

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 30  LIENSLD-AES-SRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++  A + +RV+    I   G    ++ DNG G+   +     +R  
Sbjct: 355 LVDNAIRYAGAGTRVDVEARIDSDGAPVLEVRDNGPGIPPADRERVWERFY 405


>gi|148559842|ref|YP_001259895.1| putative sensor histidine kinase BvrS [Brucella ovis ATCC 25840]
 gi|148371099|gb|ABQ61078.1| putative sensor histidine kinase BvrS [Brucella ovis ATCC 25840]
          Length = 589

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 473 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 530

Query: 76  CT 77
            T
Sbjct: 531 YT 532


>gi|2947211|gb|AAC28778.1| sensory protein BvrS [Brucella abortus]
          Length = 601

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|17988318|ref|NP_540952.1| sensor protein CHVG [Brucella melitensis bv. 1 str. 16M]
 gi|225853521|ref|YP_002733754.1| sensor protein chvG [Brucella melitensis ATCC 23457]
 gi|256112416|ref|ZP_05453337.1| Sensor protein chvG [Brucella melitensis bv. 3 str. Ether]
 gi|260562996|ref|ZP_05833482.1| BvrS protein [Brucella melitensis bv. 1 str. 16M]
 gi|265992116|ref|ZP_06104673.1| sensory protein BvrS [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993853|ref|ZP_06106410.1| sensory protein BvrS [Brucella melitensis bv. 3 str. Ether]
 gi|265999253|ref|ZP_05465527.2| BvrS [Brucella melitensis bv. 2 str. 63/9]
 gi|17984092|gb|AAL53216.1| sensor protein chvg [Brucella melitensis bv. 1 str. 16M]
 gi|225641886|gb|ACO01800.1| Sensor protein chvG [Brucella melitensis ATCC 23457]
 gi|260153012|gb|EEW88104.1| BvrS protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764834|gb|EEZ10755.1| sensory protein BvrS [Brucella melitensis bv. 3 str. Ether]
 gi|263003182|gb|EEZ15475.1| sensory protein BvrS [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092869|gb|EEZ17044.1| BvrS [Brucella melitensis bv. 2 str. 63/9]
 gi|326410089|gb|ADZ67154.1| sensor protein chvG [Brucella melitensis M28]
 gi|326539806|gb|ADZ88021.1| Sensor protein chvG [Brucella melitensis M5-90]
          Length = 601

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|62290934|ref|YP_222727.1| sensor histidine kinase BvrS [Brucella abortus bv. 1 str. 9-941]
 gi|82700845|ref|YP_415419.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189025148|ref|YP_001935916.1| BvrS, sensor histidine kinase [Brucella abortus S19]
 gi|237816442|ref|ZP_04595435.1| Sensor protein chvG [Brucella abortus str. 2308 A]
 gi|254690227|ref|ZP_05153481.1| BvrS, sensor histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260546197|ref|ZP_05821937.1| BvrS protein [Brucella abortus NCTC 8038]
 gi|260755766|ref|ZP_05868114.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260758989|ref|ZP_05871337.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260760713|ref|ZP_05873056.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884790|ref|ZP_05896404.1| sensory protein BvrS [Brucella abortus bv. 9 str. C68]
 gi|261215042|ref|ZP_05929323.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
 gi|297247319|ref|ZP_06931037.1| bvrS; BvrS, sensor histidine kinase [Brucella abortus bv. 5 str.
           B3196]
 gi|62197066|gb|AAX75366.1| BvrS, sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616946|emb|CAJ12049.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal:Bacterial sensor
           protein, C-term [Brucella melitensis biovar Abortus
           2308]
 gi|189020720|gb|ACD73442.1| BvrS, sensor histidine kinase [Brucella abortus S19]
 gi|237788509|gb|EEP62724.1| Sensor protein chvG [Brucella abortus str. 2308 A]
 gi|260096304|gb|EEW80180.1| BvrS protein [Brucella abortus NCTC 8038]
 gi|260669307|gb|EEX56247.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260671145|gb|EEX57966.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675874|gb|EEX62695.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260874318|gb|EEX81387.1| sensory protein BvrS [Brucella abortus bv. 9 str. C68]
 gi|260916649|gb|EEX83510.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
 gi|297174488|gb|EFH33835.1| bvrS; BvrS, sensor histidine kinase [Brucella abortus bv. 5 str.
           B3196]
          Length = 601

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RLGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|330991504|ref|ZP_08315455.1| Sensor histidine kinase malK [Gluconacetobacter sp. SXCC-1]
 gi|329761523|gb|EGG78016.1| Sensor histidine kinase malK [Gluconacetobacter sp. SXCC-1]
          Length = 806

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
          A+ EL++NS DA + RV+ V      +   I D+G GM  
Sbjct: 50 AVFELVKNSFDARARRVDIVFDNN-HNEIWIVDDGKGMNE 88


>gi|325279768|ref|YP_004252310.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Odoribacter splanchnicus DSM 20712]
 gi|324311577|gb|ADY32130.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Odoribacter splanchnicus DSM 20712]
          Length = 611

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 41/273 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           +KE+++NS+D     A  + +   +         + D G G+    +   V    +SK++
Sbjct: 44  VKEVVDNSIDEFAMGAG-TEITIKVED---RKVSVRDFGRGIP---LGKLVD--ASSKMN 94

Query: 82  D----DFSNI-HTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAI----SGEKISSV 131
                D      + G  G  + ++ A+S    + S         +          KI   
Sbjct: 95  TGAKYDSEAFKKSVGLNGVGIKAVNALSESFEIQSFRDGETKYVRYCRAKIVEERKIEPT 154

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI-- 189
                   T    +D+F                   +  +++        ++  F+    
Sbjct: 155 DQPNGTQVTFFADKDIFGN----------YHYIAEYLEAMVKNYVFLNTGLTIFFNDHKY 204

Query: 190 --KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE--LNEKSNEITLQGYTGIPTFNRG 245
             K   Y +  ++ +G     I  + GED            +     + G          
Sbjct: 205 YSKRGLYDLLMENMSGEGLYPIIHLKGEDIEMAMTHGRQYGEEYYSFVNGQHTTQGGTHL 264

Query: 246 NANQFYVFINGR-TVQDKFILSTIRTAYAETIP 277
           +A +  V    R   +  F +S IRT+    I 
Sbjct: 265 SAFREAVAKTIRDFYKKDFEISDIRTSIIGAIS 297


>gi|238028730|ref|YP_002912961.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia glumae BGR1]
 gi|237877924|gb|ACR30257.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia glumae BGR1]
          Length = 662

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     + R++  I     +    + DNG G+  E +P   +   
Sbjct: 545 RLEQVLINLLGNALDAVGGVAAPRIDVTIEATPATIVITVADNGPGVPPELLPRLFEPFF 604

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 605 TTK---------EMG-RGLGLGLAISSSIAS 625


>gi|323524614|ref|YP_004226767.1| ATP-binding region ATPase domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323381616|gb|ADX53707.1| ATP-binding region ATPase domain protein [Burkholderia sp.
           CCGE1001]
          Length = 666

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     + R+   I     S  F ++DNG G+  + +P   +   
Sbjct: 546 RLEQVLINLLGNALDATAGSGAPRISVHIEVAADSLSFAVSDNGPGIPEDVLPRLFEPFF 605

Query: 77  TSK 79
           T+K
Sbjct: 606 TTK 608


>gi|256827174|ref|YP_003151133.1| DNA mismatch repair protein [Cryptobacterium curtum DSM 15641]
 gi|256583317|gb|ACU94451.1| DNA mismatch repair enzyme (predicted ATPase) [Cryptobacterium
           curtum DSM 15641]
          Length = 373

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 27/143 (18%)

Query: 26  AIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
            + E++ N+ DA +  +   I+         + D+G G+  E      +   TSK+  D 
Sbjct: 52  IVIEMLRNARDAHAKLIFVAISRTESTRRITMIDDGDGVPDELQETIFEARVTSKL--DS 109

Query: 85  SNIHTFG--FRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIV 142
            ++ T+G   RG AL +I                            + V    +  G+  
Sbjct: 110 VHMDTWGIHGRGMALYAI----------------------KMNAAQAFVAASTLAGGSSF 147

Query: 143 EVRDLFFTIPARLNFLKSEQVET 165
            V      +P + +     Q   
Sbjct: 148 VVETDLGNLPEKRDQSAHPQFSF 170


>gi|206559121|ref|YP_002229881.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
 gi|198035158|emb|CAR51032.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
          Length = 669

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 549 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSAATLAVEVRDNGSGIAPDLLPRLFEPFF 608

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 609 TTK---------EMG-RGLGLGLAISSSIAS 629


>gi|149184881|ref|ZP_01863198.1| hypothetical protein ED21_17547 [Erythrobacter sp. SD-21]
 gi|148830992|gb|EDL49426.1| hypothetical protein ED21_17547 [Erythrobacter sp. SD-21]
          Length = 545

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)

Query: 31  IENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
           I+NS+ A +S V   I     G+ F    DNG GM  E +  A  R+     +   +N+ 
Sbjct: 32  IDNSIAANASEVNVRIELAEDGRKFVCFGDNGDGMNGEMLFNA-MRYG----APARANLA 86

Query: 89  TFGFRGEAL--PSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM 136
           + G  G  L   S  +V    T++SR       A++A   E +       M
Sbjct: 87  SLGKFGLGLKTAS-SSVCLRFTVISRQSDEADFAKLAWDLEHVEEQNQWEM 136


>gi|98991108|gb|ABF60572.1| DNA gyrase subunit B [Mesoplasma lactucae ATCC 49193]
          Length = 553

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEE 67
          +      + E+++NS+D   A  ++ +E  I   G     + DNG G+            
Sbjct: 5  VTGLHHLVWEILDNSIDEAMAGEATHIEVTITKNG--EVIVQDNGRGIPVGINHDTGKTA 62

Query: 68 IPMAVQR-HCTSKISDDFSNIH 88
          + +   + H   K   +   I 
Sbjct: 63 LELVFTQLHAGGKFDSESYKIS 84


>gi|170734217|ref|YP_001766164.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169817459|gb|ACA92042.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 669

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 549 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSAATLAVEVRDNGSGIAPDLLPRLFEPFF 608

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 609 TTK---------EMG-RGLGLGLAISSSIAS 629


>gi|107023805|ref|YP_622132.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|116690892|ref|YP_836515.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
 gi|105893994|gb|ABF77159.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|116648981|gb|ABK09622.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
          Length = 669

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 549 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSAATLAVEVRDNGSGIAPDLLPRLFEPFF 608

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 609 TTK---------EMG-RGLGLGLAISSSIAS 629


>gi|302342954|ref|YP_003807483.1| histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301639567|gb|ADK84889.1| histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 182

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L+ENSL+A ++ VE  I     +      I DNG GM ++ +  A     T
Sbjct: 11 LVENSLNAGANLVEIDIDEQPLADRMTVTINDNGKGMDAQTLARASDPFFT 61


>gi|294660440|ref|NP_853202.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(low)]
 gi|33860191|sp|Q59526|PARE_MYCGA RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B; Short=TopIIB
 gi|284812100|gb|AAP56770.2| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930684|gb|ADC30623.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str.
           R(high)]
          Length = 633

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 73/241 (30%), Gaps = 23/241 (9%)

Query: 29  ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           EL +N++D A    ++++E V    G     +TDNG G+      +  +          H
Sbjct: 41  ELFDNAVDEALNGSANKIEVVHKKDG--SIIVTDNGRGIPVGKNLATNLSTVDTVYTVLH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D    + + G  G     + A+S   +++          I   G KI       
Sbjct: 99  AGGKFDDQAYKV-SGGLHGVGASVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKV 157

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            N      +   +          K+ Q    +I + +   +  +  +   F    +    
Sbjct: 158 GNSTKHGTIVQFW----PDPTIFKNIQFNPYMIKERLHESSFLFKGLKIVFVDENNPELS 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
             F + +G           +  I+  +       +I + G      +    +     F N
Sbjct: 214 QTFIAKDGILEYLKYVNENKKSISKIIPFKGDYEKIVVDGCF---QYTDNESELIISFAN 270

Query: 256 G 256
            
Sbjct: 271 S 271


>gi|300114694|ref|YP_003761269.1| DNA topoisomerase IV subunit B [Nitrosococcus watsonii C-113]
 gi|299540631|gb|ADJ28948.1| DNA topoisomerase IV, B subunit [Nitrosococcus watsonii C-113]
          Length = 628

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 39/190 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           +RP+   +E+I+NS+D   A  ++ ++ V+   G     + D+G GM      EE    I
Sbjct: 30  QRPNHLAQEVIDNSVDEAIAGFATHIDVVLQSDG--SLTVRDDGRGMPVDLHPEERLPGI 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG----------EALPSIGAVSHLTLMSRPPQNNT 117
            + + R H   K S       ++ F G           AL S      L +  R      
Sbjct: 88  EVILSRLHAGGKFSS-----KSYRFAGGLHGVGVSVVNALSS-----RLEVWVRRDSCEY 137

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
               A      +      +   +   V   +        F  + +     +  ++R  A+
Sbjct: 138 HIAFANGERVSALRAINKVGKRSTGTVLRFW----PDPAFFDTPKFSVARLKHILRAKAV 193

Query: 178 AYPKVSFTFS 187
             P +  TFS
Sbjct: 194 LCPGLQVTFS 203


>gi|183238622|gb|ACC60952.1| DNA gyrase subunit B [Mycoplasma feliminutum]
          Length = 549

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++RV+  I     ++ ++ D+G G+  +
Sbjct: 11 VYEIVDNSIDEALAGFATRVDVEILKD--NYIRVKDDGRGIPVD 52


>gi|90409659|ref|ZP_01217676.1| hypothetical protein P3TCK_02811 [Photobacterium profundum 3TCK]
 gi|90329012|gb|EAS45269.1| hypothetical protein P3TCK_02811 [Photobacterium profundum 3TCK]
          Length = 181

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 22  RPSIAIKELIENSLDA---ESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA     + ++   +          + DNG G+ +E+IP       
Sbjct: 73  RLEQVLVNLISNAIDAVEHNPTPQITIAVGESLSTVQIIVKDNGAGIPTEDIPHIFDPFY 132

Query: 77  TSKIS 81
           T K+S
Sbjct: 133 TRKVS 137


>gi|304316576|ref|YP_003851721.1| histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM
          571]
 gi|302778078|gb|ADL68637.1| histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM
          571]
          Length = 181

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIA-GGGKSFFQIT--DNGFGMTSEEIPMAVQRHCT 77
          +NSL A +  V+  +     K    +   D+G GM  E +        T
Sbjct: 13 QNSLKAGAKNVKIELDIDHSKDLLTVIVDDDGCGMEEEFLSKVFDPFTT 61


>gi|56479070|ref|YP_160659.1| hypothetical protein ebA6357 [Aromatoleum aromaticum EbN1]
 gi|56315113|emb|CAI09758.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 497

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 17/112 (15%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMA---VQRH- 75
               AI ++I+NS+ A + ++   I           I D+G GM  +E+  A     R+ 
Sbjct: 29  SLETAISDIIDNSVTAGARQIRI-ITEACIDEPLIAIVDDGEGMAEDELIAAMRPGSRNP 87

Query: 76  -CTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAIS 124
             T    D+       G  G  L   S      LT++SR     + A   + 
Sbjct: 88  LAT---RDEPD----LGRFGLGLKSASFSQCRRLTVVSRKDGKTSAAVWDLD 132


>gi|297162918|gb|ADI12630.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 677

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++EL++NS+D   A  + R++  + A GG    ++ DNG G+ 
Sbjct: 60 VQELVDNSVDEALAGVADRIDVTVLADGG---VRVVDNGRGIP 99


>gi|167616630|ref|ZP_02385261.1| sensor histidine kinase [Burkholderia thailandensis Bt4]
 gi|257143131|ref|ZP_05591393.1| sensor histidine kinase [Burkholderia thailandensis E264]
          Length = 459

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 30  LIENSLD-AES-SRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++  A + +RV+    I   G    ++ DNG G+   +     +R  
Sbjct: 355 LVDNAIRYAGAGTRVDVEARIDADGAPVLEVRDNGPGIPPADRERVWERFY 405


>gi|153003320|ref|YP_001377645.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152026893|gb|ABS24661.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 488

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 14/85 (16%)

Query: 2   KIRKLSEKIINQIAAGEII-ERPSIAI---KELIENSLDA----ESSRVETVIAG-GGKS 52
           +IR L E     I  G ++  RP   +     L+ N+ DA     + RVE       G  
Sbjct: 358 RIRILEE-----IPEGLVVRARPENVVHVLGSLLANAADAVPDGRAGRVEVRAERRTGAV 412

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCT 77
              ++D+G GM  E +  A     T
Sbjct: 413 RITVSDDGAGMPPEVLRRAFDPFFT 437


>gi|28569044|gb|AAO47225.1|AF205853_1 DNA gyrase subunit B [Streptomyces rishiriensis]
          Length = 677

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++EL++NS+D   A  + R++  + A GG    ++ DNG G+ 
Sbjct: 60 VQELVDNSVDEALAGVADRIDVTVLADGG---VRVVDNGRGIP 99


>gi|28569047|gb|AAO47227.1|AF205854_1 DNA gyrase subunit B [Streptomyces caeruleus]
          Length = 677

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++EL++NS+D   A  + R++  + A GG    ++ DNG G+ 
Sbjct: 60 VQELVDNSVDEALAGVADRIDVTVLADGG---VRVVDNGRGIP 99


>gi|83717654|ref|YP_439960.1| sensor histidine kinase [Burkholderia thailandensis E264]
 gi|83651479|gb|ABC35543.1| sensor histidine kinase [Burkholderia thailandensis E264]
          Length = 449

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 30  LIENSLD-AES-SRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++  A + +RV+    I   G    ++ DNG G+   +     +R  
Sbjct: 345 LVDNAIRYAGAGTRVDVEARIDADGAPVLEVRDNGPGIPPADRERVWERFY 395


>gi|1708089|sp|P50074|GYRBR_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-resistant
 gi|581742|emb|CAA78951.1| gyrase B (novobiocin-resistant) [Streptomyces caeruleus]
          Length = 677

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++EL++NS+D   A  + R++  + A GG    ++ DNG G+ 
Sbjct: 60 VQELVDNSVDEALAGVADRIDVTVLADGG---VRVVDNGRGIP 99


>gi|268678647|ref|YP_003303078.1| DNA gyrase subunit beta [Sulfurospirillum deleyianum DSM 6946]
 gi|268616678|gb|ACZ11043.1| DNA gyrase, B subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 770

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 40/248 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS-----EEIPMA----VQRH 75
           E+++NS+D   A   + ++  +   G +    TDNG G+       E +  A       H
Sbjct: 40  EVVDNSIDEAMAGYCTNIKVELTREGSAII--TDNGRGIPVGWHEGENMSAATVVLTVLH 97

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAI-SGEKI 128
              K   D   + + G  G       AL S      L    +   N    + A       
Sbjct: 98  AGGKFDKDTYKV-SGGLHGVGVSVVNALSS-----KLVATIKREGNEHRQEFACGIPVTP 151

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
             V       GTI+E               ++ + +  ++    R +A   PK++     
Sbjct: 152 LDVVKTTNRTGTIIEFW-------PDATIFETTEFQFEILATRFRELAYLNPKITIELKD 204

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +  R ++      G   + +  +  ++ +  AV       ++ +        +N   + 
Sbjct: 205 QRDGRTELYHF--EGGIKQFVLDLNKKEKVAEAVHYTASVEDVEIDIAM---MYNSTYSE 259

Query: 249 QFYVFING 256
             Y F+N 
Sbjct: 260 ILYSFVNN 267


>gi|254494407|ref|ZP_05107578.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268595502|ref|ZP_06129669.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268597556|ref|ZP_06131723.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268599717|ref|ZP_06133884.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602061|ref|ZP_06136228.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604401|ref|ZP_06138568.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682862|ref|ZP_06149724.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685009|ref|ZP_06151871.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687287|ref|ZP_06154149.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043039|ref|ZP_06568772.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513447|gb|EEH62792.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548891|gb|EEZ44309.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268551344|gb|EEZ46363.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268583848|gb|EEZ48524.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586192|gb|EEZ50868.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588532|gb|EEZ53208.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268623146|gb|EEZ55546.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625293|gb|EEZ57693.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627571|gb|EEZ59971.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291013042|gb|EFE05015.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 296

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 40 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 88


>gi|27466922|ref|NP_763559.1| DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57865927|ref|YP_190090.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
 gi|251811368|ref|ZP_04825841.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874725|ref|ZP_06283604.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
 gi|293367576|ref|ZP_06614229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          epidermidis M23864:W2(grey)]
 gi|38604835|sp|Q8CQK4|GYRB_STAES RecName: Full=DNA gyrase subunit B
 gi|81819302|sp|Q5HK03|GYRB_STAEQ RecName: Full=DNA gyrase subunit B
 gi|27314464|gb|AAO03601.1|AE016744_4 DNA gyrase subunit B [Staphylococcus epidermidis ATCC 12228]
 gi|57636585|gb|AAW53373.1| DNA gyrase, B subunit [Staphylococcus epidermidis RP62A]
 gi|251805117|gb|EES57774.1| DNA gyrase subunit B [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296441|gb|EFA88956.1| DNA gyrase, B subunit [Staphylococcus epidermidis SK135]
 gi|291318289|gb|EFE58682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          epidermidis M23864:W2(grey)]
 gi|329724157|gb|EGG60675.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU144]
 gi|329735731|gb|EGG72012.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU028]
 gi|329736056|gb|EGG72329.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU045]
          Length = 643

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYASHIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|326483879|gb|EGE07889.1| hypothetical protein TEQG_06921 [Trichophyton equinum CBS 127.97]
          Length = 544

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 100/282 (35%), Gaps = 11/282 (3%)

Query: 106 LTLMSRPPQNNTG-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQV 163
           + + +R  +             +  S  P +   GT V V +   ++P R     K    
Sbjct: 5   VHITTRVLEEQVARTVKFGRDGEPISETPASHPIGTTVRVCNFLQSLPVRRQEAEKKSTK 64

Query: 164 ETNLITDVIRRMAIAYPKVSFTFSTIK-SNRYKMNFQSTNGNFPERISQVIGEDFINNAV 222
               I  +++  AIA PK   +   +K   +  +   S + +  + ISQ+IG   I++ +
Sbjct: 65  SILAIKKLLQGYAIARPKTRLSMRLLKSKEQDWIYAPSPSPSARDAISQIIGSTVISSCI 124

Query: 223 ELNEKSNEITLQGYT-GIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRY 281
            LN        +  +  +   +        V +      ++ +L  I + + +       
Sbjct: 125 SLNSCHPVTRGRDSSDSVIEGHDTLTIHVSVVVPKPAADNRAVLHIIESVFMDIYSPETS 184

Query: 282 PVVVLLLEIDPRQVDVNVH---PAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
            +          Q+ V++      K+  RFR    +   I      ++  + +       
Sbjct: 185 TITPTPDTRQSNQLTVDISSPASTKNCGRFRTNETLTPTI-NPWTLSLAAQRLRDPESHL 243

Query: 339 KKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTND 380
                 F    AP+ +LP  + +++    +  +++ +LS +D
Sbjct: 244 LTPQREFQ---APQNNLPPRSPNISMKGGRASMRQAKLSLHD 282


>gi|300689720|ref|YP_003750715.1| hypothetical protein RPSI07_0006 [Ralstonia solanacearum PSI07]
 gi|299076780|emb|CBJ49387.1| conserved hypothethical protein [Ralstonia solanacearum PSI07]
          Length = 483

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 25  IAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
            A+ ++I+NS+ A ++ V+      G  S   I D+G GM   E+  A+     S +  D
Sbjct: 14  AAVADIIDNSIAAGATHVDVQFSWDGTASRLAILDDGRGMDDSELESAMTLGDKSPL--D 71

Query: 84  FSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGT 140
             +    G  G  L   S      LT+ S    ++   +  +     +     A+  G 
Sbjct: 72  ARDPEDLGRFGMGLKTASFSQCRRLTVASAKSGSHACLRWDLDELARNPDIGWALLEGP 130


>gi|260787200|ref|XP_002588642.1| hypothetical protein BRAFLDRAFT_285500 [Branchiostoma floridae]
 gi|229273809|gb|EEN44653.1| hypothetical protein BRAFLDRAFT_285500 [Branchiostoma floridae]
          Length = 1932

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 14/76 (18%)

Query: 29 ELIENSLDAESSRV-------ETVIAG---GGKSFFQITDNGFGMTSEEI-PMAVQRHCT 77
          ELI+N+L A +  V         ++     GGK    + DNG GMTS+++   AV R   
Sbjct: 19 ELIDNALAATADNVGDRNIELRIILDDRIEGGKHCICVLDNGHGMTSKDLNDWAVYRL-- 76

Query: 78 SKI-SDDFSNIHTFGF 92
          SK    D       GF
Sbjct: 77 SKFNRKDRRRSTELGF 92


>gi|332535128|ref|ZP_08410938.1| topoisomerase IV subunit B [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035446|gb|EGI71944.1| topoisomerase IV subunit B [Pseudoalteromonas haloplanktis ANT/505]
          Length = 629

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 78/214 (36%), Gaps = 24/214 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  ++R++ ++     +  +++D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEAMAGHATRIDVILHED--NSLEVSDDGRGMPIDIHPEEGIPGVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGE 126
           +   + H   K S+      + G  G  +  + A+S  + +  R                
Sbjct: 90  LIFTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDAQQYRMAFENGDKV 148

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           +  SV        T   VR  +  +    ++  S       +  +++  A+  P +   F
Sbjct: 149 EDLSVIGTVGKRNTGTTVR-FWADV----SYFDSPNYSITKLNHLLKAKAVLCPGLRIKF 203

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
              K  +    +    G     I  V G + +  
Sbjct: 204 -VNKQTKETKEWFYETGLKDYLIEAVKGFETLPQ 236


>gi|327312581|ref|YP_004328018.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946296|gb|AEA22181.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 397

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 26  AIKELIENSLDA--ESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L +N++D+   +S  +   +   G+    +++D G G+  ++I    +   T+K
Sbjct: 291 VVENLCKNAVDSMGGASGSITIRLEEAGRRVVVEVSDTGRGIKKKDIRNVFRPGFTTK 348


>gi|194222877|ref|XP_001501704.2| PREDICTED: MORC family CW-type zinc finger 1 [Equus caballus]
          Length = 980

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++N+ DA ++R++   +      GG     + D+G GM+ EE    +    + K+   
Sbjct: 27 ELLDNARDAGAARLDVFSVDNENLQGGFMLCFL-DDGCGMSPEEASNIIYFGTSKKLLST 85

Query: 84 FSNIHTFG 91
             I  +G
Sbjct: 86 LKFIGQYG 93


>gi|153956436|ref|YP_001397201.1| sensory transduction kinase [Clostridium kluyveri DSM 555]
 gi|219856744|ref|YP_002473866.1| hypothetical protein CKR_3401 [Clostridium kluyveri NBRC 12016]
 gi|146349294|gb|EDK35830.1| Predicted sensory transduction kinase [Clostridium kluyveri DSM
           555]
 gi|219570468|dbj|BAH08452.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 307

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L++N ++ + +++++  +   G K   +ITDNG G+   ++P   +R
Sbjct: 210 LVQNVINHSRATQIKIEMTQEGNKIEIRITDNGIGIEKADLPHIFER 256


>gi|70607074|ref|YP_255944.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius DSM
          639]
 gi|68567722|gb|AAY80651.1| DNA topoisomerase VI subunit B [Sulfolobus acidocaldarius DSM
          639]
          Length = 532

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 14/72 (19%)

Query: 22 RPSIA----IKELIENSLDAE-------SSRVETVIAGGGKS--FFQITDNGFGMTSEEI 68
           P+ A    ++ELIEN+LDA        S ++   +    K      + DNG G+    +
Sbjct: 27 NPARALYQTVRELIENALDATDVHNLLPSLKISIELVDQQKQIYKVNVEDNGIGIPPHVV 86

Query: 69 PMAVQR-HCTSK 79
          P A  +   +SK
Sbjct: 87 PNAFGKVLYSSK 98


>gi|325268706|ref|ZP_08135335.1| sensor histidine kinase [Prevotella multiformis DSM 16608]
 gi|324988950|gb|EGC20904.1| sensor histidine kinase [Prevotella multiformis DSM 16608]
          Length = 397

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 26  AIKELIENSLDA--ESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L +N++D+   +S  +   +   G+    +++D G G+  ++I    +   T+K
Sbjct: 291 VVENLCKNAVDSMGGASGSITIRLEEAGRRVVVEVSDTGRGIKKKDIRNVFRPGFTTK 348


>gi|325855166|ref|ZP_08171789.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325483903|gb|EGC86847.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 397

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 26  AIKELIENSLDA--ESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L +N++D+   +S  +   +   G+    +++D G G+  ++I    +   T+K
Sbjct: 291 VVENLCKNAVDSMGGASGSITIRLEEAGRRVVVEVSDTGRGIKKKDIRNVFRPGFTTK 348


>gi|325287244|ref|YP_004263034.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324322698|gb|ADY30163.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 463

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 7   SEKIINQIAAGEIIERP-----SIAIKELIENSLDAESSRVETVIAG---GGKSFFQITD 58
              I+N + + E++ R      + A+  ++EN++   S+ ++  I      G+    ITD
Sbjct: 336 DVTIVNNVCSAEVLLRIDKFHFTTALLNILENAVKYGSASIKITIETKHINGEYCINITD 395

Query: 59  NGFGMTSEEIPMAVQRHCTSKISD-DFSNIHTFG 91
           NG G+  + +P+   +    ++++ +  N+   G
Sbjct: 396 NGIGIPEKNLPLIFDKFY--RVTEGNLHNVKGLG 427


>gi|304405884|ref|ZP_07387542.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345127|gb|EFM10963.1| DNA gyrase, B subunit [Paenibacillus curdlanolyticus YK9]
          Length = 636

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE---IPMAVQR------H 75
           E+++NS+D   A   + ++ ++     +   + DNG G+   E   +  +         H
Sbjct: 44  EVVDNSIDEALAGFCTHIDVIVHED--NSITVVDNGRGIPVGENTKLKKSTVEVVMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K   +   + + G  G  +  + A+S H+T+  +   +    Q             V
Sbjct: 102 AGGKFGGEGYKV-SGGLHGVGVSVVNALSEHVTVTVKR--DGHVYQQEYRRGAPQYDIKV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +      +       P    F ++   E  ++   IR +A     +S + +       
Sbjct: 159 IGDSEETGTIVQFK---PDPEIFTETTVYEYEILQSRIRELAFLNKGISISLT--DERTG 213

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           + N    +G   E +  +       +   +  +  +  +Q    +  +N   ++  Y F 
Sbjct: 214 QSNIYKYDGGIIEFVKYLNRNREALHETPIYVEGEKDHIQVEVAL-QYNDSYSDNIYSFA 272

Query: 255 NG 256
           N 
Sbjct: 273 NN 274


>gi|11498260|ref|NP_069486.1| DNA topoisomerase VI subunit B [Archaeoglobus fulgidus DSM 4304]
 gi|3122957|sp|O29605|TOP6B_ARCFU RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|2649967|gb|AAB90588.1| DNA topoisomerase VI, subunit B (top6B) [Archaeoglobus fulgidus DSM
           4304]
          Length = 602

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 40/186 (21%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQR-HCT 77
             +KE ++N+LDA  E+     +   I+         + DNG G+  E+IP    +    
Sbjct: 32  TVVKEAVDNALDACEEAGILPDIFVRISKVDDHFKIVVEDNGPGIPREQIPKVFGKLLYG 91

Query: 78  SKISDDFSNIH-TFGFRGEALPSIGAV--SHL------TLMSRPPQNNTG--------AQ 120
           S+  +    I  + G +G  +    AV  + L      T++S+ P  +           +
Sbjct: 92  SRFHE----IRQSRGQQGIGIS--AAVLYAQLTTGKPATVISKTPDEDRAKKVVLYINTK 145

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                          +  GT +E+      +  R             + + +R  ++  P
Sbjct: 146 KNEPEIVEEGEEEWYLPSGTKIELEVAGNYVRERKQS----------VYEYLRETSVINP 195

Query: 181 KVSFTF 186
               TF
Sbjct: 196 HAKITF 201


>gi|117919182|ref|YP_868374.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3]
 gi|117611514|gb|ABK46968.1| DNA topoisomerase IV subunit B [Shewanella sp. ANA-3]
          Length = 628

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIEVVLHTD--NSLEVTDDGRGMPVDIHPEEGIPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 88  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFENGFK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            E++         N GT V             ++  S     + +  ++R  A+  P + 
Sbjct: 147 VEELKVTGTCGRRNTGTRVHFW-------PDASYFDSANFSNSKLIYLLRAKAVLCPGLR 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
             F+    +  +++         + +   +G++ +
Sbjct: 200 IKFTN--KHTNEVHEWYYESGLTDYLKAAVGDNLM 232


>gi|113971563|ref|YP_735356.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4]
 gi|114046265|ref|YP_736815.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7]
 gi|113886247|gb|ABI40299.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-4]
 gi|113887707|gb|ABI41758.1| DNA topoisomerase IV subunit B [Shewanella sp. MR-7]
          Length = 628

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 84/215 (39%), Gaps = 29/215 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIEVVLHTD--NSLEVTDDGRGMPVDIHPEEGIPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 88  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFENGFK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            E++         N GT V             ++  S     + +  ++R  A+  P + 
Sbjct: 147 VEELKVTGTCGRRNTGTRVHFW-------PDASYFDSANFSNSKLIYLLRAKAVLCPGLR 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
             F+    +  +++         + +   +G++ +
Sbjct: 200 IKFTN--KHTNEVHEWYYESGLTDYLKAAVGDNLM 232


>gi|304388623|ref|ZP_07370687.1| conserved hypothetical protein [Neisseria meningitidis ATCC
          13091]
 gi|304337440|gb|EFM03610.1| conserved hypothetical protein [Neisseria meningitidis ATCC
          13091]
 gi|325131420|gb|EGC54129.1| hypothetical protein NMBM6190_1925 [Neisseria meningitidis M6190]
 gi|325137453|gb|EGC60040.1| hypothetical protein NMBES14902_1903 [Neisseria meningitidis
          ES14902]
 gi|325141453|gb|EGC63929.1| hypothetical protein NMB9615945_1950 [Neisseria meningitidis
          961-5945]
 gi|325199102|gb|ADY94558.1| conserved hypothetical protein [Neisseria meningitidis G2136]
          Length = 548

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 29 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 77


>gi|261393339|emb|CAX50973.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 548

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 29 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 77


>gi|157368815|ref|YP_001476804.1| ATPase domain-containing protein [Serratia proteamaculans 568]
 gi|157320579|gb|ABV39676.1| ATP-binding region ATPase domain protein [Serratia proteamaculans
          568]
          Length = 720

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAGGGK---SFFQITDNGFGMTSE 66
          I+    A+ EL++N+ DA+S  +        K   +   ITD G GM+ +
Sbjct: 24 IQDSYAAVVELVKNAYDADSPDIHIEFRANSKLNTTSIVITDRGHGMSRD 73


>gi|218767414|ref|YP_002341926.1| hypothetical protein NMA0428 [Neisseria meningitidis Z2491]
 gi|121051422|emb|CAM07715.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319409677|emb|CBY89978.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
 gi|325204961|gb|ADZ00415.1| conserved hypothetical protein [Neisseria meningitidis
          M01-240355]
          Length = 548

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 29 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 77


>gi|288924553|ref|ZP_06418490.1| sensor histidine kinase [Prevotella buccae D17]
 gi|288338340|gb|EFC76689.1| sensor histidine kinase [Prevotella buccae D17]
          Length = 380

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 20/89 (22%)

Query: 2   KI-RKLS-EKIINQIAAGE---IIERPSIAIKELIENSLDA-----ESSRVETVIAGGG- 50
           KI + L  + II ++ A     +IE  +       +N++DA         V   +   G 
Sbjct: 257 KIVKILPKDDIIIKLNASLFEWVIENLA-------KNAIDAMGGVPG--TVTLRVEDAGE 307

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           K+  +++D G G+  +++    +   T+K
Sbjct: 308 KAVIEVSDTGRGIRRKDVGNVFRPGFTTK 336


>gi|225570072|ref|ZP_03779097.1| hypothetical protein CLOHYLEM_06168 [Clostridium hylemonae DSM
           15053]
 gi|225161542|gb|EEG74161.1| hypothetical protein CLOHYLEM_06168 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 18/69 (26%)

Query: 18  EIIERPSIAIKELIENSLDA----ESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I         L++N+ DA     +             GK    + DNG G+  E++  
Sbjct: 144 EVILN-------LLQNAKDAVNPDGA----IYFHAFTEAGKLCISVRDNGCGIPQEDMEH 192

Query: 71  AVQRHCTSK 79
             +   T K
Sbjct: 193 IFEPFVTYK 201


>gi|70704950|gb|AAZ06866.1| DNA gyrase subunit B [Acholeplasma multilocale]
          Length = 539

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+I+NS+D   A  +  ++  I   G     + DNG G+            + +   + H
Sbjct: 11 EIIDNSIDEAMAGEADTIKVTITNDG--EVIVQDNGRGIPVGIQQDSGKSALELVFTQLH 68

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 69 AGGKFDSDSYKIS 81


>gi|317509459|ref|ZP_07967077.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974]
 gi|316252288|gb|EFV11740.1| DNA gyrase, subunit B [Segniliparus rugosus ATCC BAA-974]
          Length = 678

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAV 72
           ++E+++NS+D   A  ++RV+  + A GG    ++ D+G G+            E+ + V
Sbjct: 51  VQEVVDNSVDEAMAGYATRVDVTLLADGG---IEVVDDGRGIPVAPHASGPPTVEVVLTV 107

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKIS 129
             H   K   D   + + G  G  +  + A+S    + +      +      A    K  
Sbjct: 108 L-HAGGKFDSDSYAV-SGGLHGVGISVVNALSYKLEVEI----DVDGHHWTQAYDNAKPG 161

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
            +   A    T   VR  F+  P      ++ + + + I   ++ MA     +  T +
Sbjct: 162 PLVKGAAVKRTGTTVR--FWADP---KIFETTRYDFDTIARRLQEMAFLNKGLIITLT 214


>gi|241667848|ref|ZP_04755426.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254876390|ref|ZP_05249100.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254842411|gb|EET20825.1| topoisomerase IV [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
          Length = 627

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+++NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIVDNSVDEVLAGYASKINITLYDD--NSIEVADDGRGMPVD 76


>gi|154687256|ref|YP_001422417.1| KinB [Bacillus amyloliquefaciens FZB42]
 gi|154353107|gb|ABS75186.1| KinB [Bacillus amyloliquefaciens FZB42]
          Length = 427

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESS---RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+NS++A  S   R+E  +         QITDNG GM+ EE+    + + T K
Sbjct: 331 LIKNSIEAVPSENGRIEVSVQKQEEMILIQITDNGIGMSDEELQKLGKPYYTLK 384


>gi|126668651|ref|ZP_01739603.1| hypothetical protein MELB17_05489 [Marinobacter sp. ELB17]
 gi|126626910|gb|EAZ97555.1| hypothetical protein MELB17_05489 [Marinobacter sp. ELB17]
          Length = 632

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 21/105 (20%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE------IPMAVQRHCTSKISD 82
           ELI N+ DA +  V  +   G  +   + D+G GM+ E+      + +A +   T  ISD
Sbjct: 33  ELIANAYDANAKNVYIIQEKGSLT---VEDDGHGMSYEDGDIAKYLNVAQE---TRSISD 86

Query: 83  DFSNIHT------FGFRGEA-LPSIGAVS-HLTLMSRPPQNNTGA 119
                 +       G +G   L ++ +VS ++ + +      +G 
Sbjct: 87  QEYVSGSDNKRKKMGRKGVGKLAAL-SVSPNVEIKTVRNGERSGF 130


>gi|167035742|ref|YP_001670973.1| hypothetical protein PputGB1_4751 [Pseudomonas putida GB-1]
 gi|166862230|gb|ABZ00638.1| hypothetical protein PputGB1_4751 [Pseudomonas putida GB-1]
          Length = 537

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTSKIS 81
           + A+ ++++NS+ A +S+V+  +A   K   +  I DNG GM  + +  A  R+  SK  
Sbjct: 28  NTAVADIVDNSIAANASKVQLWLAADLKGDIRLLIADNGDGMDRQGLINA-MRYG-SKAR 85

Query: 82  DDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
               +  + G  G  L   S      L+++SRP               ++ V    +   
Sbjct: 86  ---PSAASLGKYGLGLKTASTAFCKRLSVVSRPDGETLPIMATWDLYHVAKVNKWTLLLS 142

Query: 140 TIVEVRDL 147
              +   L
Sbjct: 143 ETCDAEAL 150


>gi|120600194|ref|YP_964768.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1]
 gi|146291878|ref|YP_001182302.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32]
 gi|120560287|gb|ABM26214.1| DNA topoisomerase IV subunit B [Shewanella sp. W3-18-1]
 gi|145563568|gb|ABP74503.1| DNA topoisomerase IV subunit B [Shewanella putrefaciens CN-32]
 gi|319425113|gb|ADV53187.1| DNA topoisomerase IV, B subunit [Shewanella putrefaciens 200]
          Length = 628

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 83/214 (38%), Gaps = 29/214 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM      EE    + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHATKIEVVLHLD--NSLEVTDDGRGMPVDIHPEEGIPGVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           + + + H   K S+      + G  G  +  + A+S  + +  R      +   +     
Sbjct: 89  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFEHGFKV 147

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           E++         N GT V             ++  S     + +  ++R  A+  P +  
Sbjct: 148 EELKVTGTCGRRNTGTRVHFW-------PDASYFDSANFSNSKLIYLLRAKAVLCPGLRI 200

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
            F+       +++         + +   +G++ +
Sbjct: 201 KFTN--KQTNEVHEWFYESGLTDYLKAAVGDNVM 232


>gi|265983103|ref|ZP_06095838.1| sensory protein BvrS [Brucella sp. 83/13]
 gi|306837661|ref|ZP_07470530.1| Sensor protein chvG [Brucella sp. NF 2653]
 gi|306842795|ref|ZP_07475436.1| Sensor protein chvG [Brucella sp. BO2]
 gi|306843510|ref|ZP_07476111.1| Sensor protein chvG [Brucella sp. BO1]
 gi|264661695|gb|EEZ31956.1| sensory protein BvrS [Brucella sp. 83/13]
 gi|306276201|gb|EFM57901.1| Sensor protein chvG [Brucella sp. BO1]
 gi|306287068|gb|EFM58576.1| Sensor protein chvG [Brucella sp. BO2]
 gi|306407219|gb|EFM63429.1| Sensor protein chvG [Brucella sp. NF 2653]
          Length = 601

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   + G G      + DNG G+  E I    +R 
Sbjct: 485 RLGQVVSNLIENARSFVPDDTG--RIVVTLTGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|254718147|ref|ZP_05179958.1| Sensor protein chvG [Brucella sp. 83/13]
          Length = 589

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   + G G      + DNG G+  E I    +R 
Sbjct: 473 RLGQVVSNLIENARSFVPDDTG--RIVVTLTGEGNRLRILVEDNGPGIPIENIERIFERF 530

Query: 76  CT 77
            T
Sbjct: 531 YT 532


>gi|94957786|gb|ABF47143.1| DNA gyrase subunit B [Entomoplasma somnilux]
          Length = 552

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A +   ++  I   G     + D+G G+            + +   + H
Sbjct: 13 EILDNSIDEAMAGAAHEIKVSITKDG--EIIVQDDGRGIPVGIQKDSGKSALELVFTQLH 70

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 71 AGGKFDSDSYKIS 83


>gi|119896649|ref|YP_931862.1| putative two-component sensor kinase [Azoarcus sp. BH72]
 gi|119669062|emb|CAL92975.1| putative two-component sensor kinase [Azoarcus sp. BH72]
          Length = 751

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 38/141 (26%)

Query: 17  GEIIERPSIAIKELIENSLDAESSRVETVIAGG-----GKSFFQITDNGFGMTSEEIPMA 71
            E+I   ++A+ EL++N+ DAE+SRV     G      G    +I D+G GM+ + +  A
Sbjct: 24  SELISNDAVAVIELVKNAYDAEASRVLIKFVGPLQPKQGC--IEIFDDGAGMSLDVVRGA 81

Query: 72  -------VQRHCTSKISDDFSNIHTFGFR--GE------A---LPSIGAVSHLTLMSRPP 113
                   +R  TS          + G R  GE      A   L S      L L++R  
Sbjct: 82  WMEPATPGKRQKTS--------SGSKGRRVLGEKGIGRFAAMRLAS-----ELELITRAR 128

Query: 114 QNNTGAQIAISGEKISSVRPV 134
             +          +    +  
Sbjct: 129 GADQEVYGIFDWTQFEDEQKY 149


>gi|28566177|gb|AAO43433.1| DNA gyrase subunit B [Entomoplasma somnilux]
          Length = 551

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A +   ++  I   G     + D+G G+            + +   + H
Sbjct: 19 EILDNSIDEAMAGAAHEIKVSITKDG--EIIVQDDGRGIPVGIQKDSGKSALELVFTQLH 76

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 77 AGGKFDSDSYKIS 89


>gi|197286191|ref|YP_002152063.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320]
 gi|227357310|ref|ZP_03841667.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906]
 gi|194683678|emb|CAR44632.1| DNA topoisomerase IV subunit B [Proteus mirabilis HI4320]
 gi|227162573|gb|EEI47562.1| DNA topoisomerase IV subunit B [Proteus mirabilis ATCC 29906]
          Length = 631

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 31/211 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +++VE ++        ++ DNG GM  +          
Sbjct: 31  TRPNHLAQEVIDNSVDEALAGHATKVEVILYAD--QSIEVIDNGRGMPVDIHPELKVSAI 88

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +A   H   K S+     ++ G  G  +  + A+S  + +  R          +   
Sbjct: 89  ELILAHL-HAGGKFSNKNYQ-YSGGLHGVGISVVNALSKRIEVTVRREGKIYQIAFENGD 146

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-- 180
             E++  +      + GT V                KS          V++  A+  P  
Sbjct: 147 KVEELHQIGTCAKRDTGTSVHFWPDSTYFDIPRFSSKSLS-------HVLKAKAVLCPGV 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            VSFT     +               E +++
Sbjct: 200 NVSFTDKVNNTQETWCYADGLTDYLSEAVAE 230


>gi|253995600|ref|YP_003047664.1| hypothetical protein Mmol_0227 [Methylotenera mobilis JLW8]
 gi|253982279|gb|ACT47137.1| conserved hypothetical protein [Methylotenera mobilis JLW8]
          Length = 664

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 29 ELIENSLDAESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAV 72
          ELI NSLDA+++ +E        GK    I DNG G T  E P   
Sbjct: 30 ELIWNSLDADATLIEIKEETYGTGKQRIIIADNGAGFTHFEAPSLF 75


>gi|167627291|ref|YP_001677791.1| DNA topoisomerase IV subunit B [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|167597292|gb|ABZ87290.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
          subsp. philomiragia ATCC 25017]
          Length = 627

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+++NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIVDNSVDEVLAGYASKINITLYDD--NSIEVADDGRGMPVD 76


>gi|163735121|ref|ZP_02142557.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           litoralis Och 149]
 gi|161391579|gb|EDQ15912.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           litoralis Och 149]
          Length = 586

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA     + +V+ +++ G  +   + DNG G+  E++    +   T+K
Sbjct: 482 LLRNAIDATKSAAAPKVDIILSAGETATLTVRDNGPGI--EDLDALFEPFYTTK 533


>gi|270157507|ref|ZP_06186164.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968]
 gi|289164107|ref|YP_003454245.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150]
 gi|269989532|gb|EEZ95786.1| DNA topoisomerase IV B subunit [Legionella longbeachae D-4968]
 gi|288857280|emb|CBJ11107.1| Topoisomerase IV subunit B [Legionella longbeachae NSW150]
          Length = 627

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S +   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFASHIRVTLHEDG--SIEVEDDGRGMPVD 77


>gi|304315545|ref|YP_003850690.1| DNA gyrase subunit beta [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777047|gb|ADL67606.1| DNA gyrase, B subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 633

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 83/246 (33%), Gaps = 30/246 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAV 72
           + E+++NS+D   A     ++ VI     +   + D+G G+ ++          E+ + V
Sbjct: 41  VYEIVDNSIDEALAGYCKNIDVVIHKD--NSVSVIDDGRGIPTDIHPQTGKSGVEVALTV 98

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSV 131
             H   K ++D   + + G  G  L  + A+S  L ++ +        +      K    
Sbjct: 99  L-HAGGKFNNDVYKV-SGGLHGVGLSVVNALSKRLEVIVKQNGKVYEQKYERGVPKSDLK 156

Query: 132 RPVAMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                +  GT +                ++ + + ++++  +R ++     V       +
Sbjct: 157 IIGDTDETGTTIT-------FAPDDEIFETLEYDYDILSQRLRELSFLNKGVRIRLMDER 209

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
             +  +      G   E +  +     + +   +  +S   T +       +N       
Sbjct: 210 DGKEDVFHY--EGGIVEFVKYLNRNKEVLHPEPIYMESKSDTYEVEVA-MQYNDSYTENI 266

Query: 251 YVFING 256
           + F N 
Sbjct: 267 FSFANN 272


>gi|332704005|ref|ZP_08424093.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554154|gb|EGJ51198.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 405

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 25  IAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L+ N+LDA        V T +  G +   +I D G G+  E +    +   T+K
Sbjct: 295 QVVLNLLTNALDAIKDSGCITVRTFLERGARLCLEIRDTGCGIPPEHLDKLFEPFFTTK 353


>gi|254388740|ref|ZP_05003973.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294813352|ref|ZP_06771995.1| DNA mismatch repair enzyme [Streptomyces clavuligerus ATCC 27064]
 gi|326441712|ref|ZP_08216446.1| hypothetical protein SclaA2_11637 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702460|gb|EDY48272.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294325951|gb|EFG07594.1| DNA mismatch repair enzyme [Streptomyces clavuligerus ATCC 27064]
          Length = 622

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 19/121 (15%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGGG----------KSFFQITDNGFGMTSEEIPMA 71
             + AI ELI+N ++A +  VE  +                   + DNG GM  E +  +
Sbjct: 24  STAHAIAELIDNGIEAGADLVELFVVESTDRPSQRSRHRVEKIAVLDNGSGMDPETLRQS 83

Query: 72  VQRHC-TSKISDDFSNIHTFGFRGEALP--SIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
           ++    T         I  F   G  LP  SI     + + S     +      +   ++
Sbjct: 84  LRFGAGT---RQQRKGIGRF---GVGLPNSSISQCDRVDVWSWTNGPDNALHTYLDLTEV 137

Query: 129 S 129
            
Sbjct: 138 R 138


>gi|121635669|ref|YP_975914.1| hypothetical protein NMC1991 [Neisseria meningitidis FAM18]
 gi|120867375|emb|CAM11147.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
          Length = 560

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 41 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 89


>gi|146313079|ref|YP_001178153.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638]
 gi|145319955|gb|ABP62102.1| DNA topoisomerase IV subunit B [Enterobacter sp. 638]
          Length = 630

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVHNIAFENGDK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +     +T +++  A+  P  +++F
Sbjct: 147 VQELQVIGTCGKRNTGTSVHFW----PDESFFDSPRFSVTRMTHILKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|325955726|ref|YP_004286336.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC]
 gi|325332291|gb|ADZ06199.1| DNA gyrase subunit B [Lactobacillus acidophilus 30SC]
          Length = 654

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 97


>gi|315037235|ref|YP_004030803.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112]
 gi|312275368|gb|ADQ58008.1| DNA gyrase, B subunit [Lactobacillus amylovorus GRL 1112]
 gi|327182554|gb|AEA31001.1| DNA gyrase subunit B [Lactobacillus amylovorus GRL 1118]
          Length = 654

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 97


>gi|293380895|ref|ZP_06626931.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1]
 gi|290922568|gb|EFD99534.1| DNA gyrase, B subunit [Lactobacillus crispatus 214-1]
          Length = 654

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 97


>gi|262046286|ref|ZP_06019249.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|295691867|ref|YP_003600477.1| DNA gyrase, b subunit [Lactobacillus crispatus ST1]
 gi|312977114|ref|ZP_07788863.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05]
 gi|260573616|gb|EEX30173.1| DNA gyrase, B subunit [Lactobacillus crispatus MV-3A-US]
 gi|295029973|emb|CBL49452.1| DNA gyrase, B subunit [Lactobacillus crispatus ST1]
 gi|310896442|gb|EFQ45507.1| DNA gyrase, B subunit [Lactobacillus crispatus CTV-05]
          Length = 654

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 97


>gi|256843827|ref|ZP_05549314.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256613732|gb|EEU18934.1| DNA gyrase, B subunit [Lactobacillus crispatus 125-2-CHN]
          Length = 654

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 97


>gi|227877545|ref|ZP_03995605.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
          JV-V01]
 gi|256849618|ref|ZP_05555050.1| subunit B [Lactobacillus crispatus MV-1A-US]
 gi|227862844|gb|EEJ70303.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
          JV-V01]
 gi|256713734|gb|EEU28723.1| subunit B [Lactobacillus crispatus MV-1A-US]
          Length = 654

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 97


>gi|62868798|gb|AAY17585.1| DNA gyrase B subunit [Lactobacillus crispatus]
          Length = 483

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 19 EIIDNSIDERLAGFATKIEVTINEDG--SVTVQDDGRGIPVD 58


>gi|332798791|ref|YP_004460290.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332696526|gb|AEE90983.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 436

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ N+LDA        +   +         ++D+G G+ ++++P   +   ++K ++D
Sbjct: 319 LVSNALDAIDDKGVIEINICLDEETV-IITVSDDGKGINAKDLPYIFEPGFSTKYNED 375


>gi|254671708|emb|CBA09493.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 555

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA ++ VE  +    +    I DNG GM+ +EI     R
Sbjct: 36 AIAELIANAYDACATEVEVRLFDKPEHKIVIKDNGIGMSFDEINDFYLR 84


>gi|110679530|ref|YP_682537.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           denitrificans OCh 114]
 gi|109455646|gb|ABG31851.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           denitrificans OCh 114]
          Length = 567

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA     + +VE +++ G  +   + DNG G+  E++    +   T+K
Sbjct: 463 LLRNAIDATKSAAAPKVEIILSAGETATLTVRDNGPGI--EDLDALFEPFYTTK 514


>gi|330721164|gb|EGG99282.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC2047]
          Length = 631

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+  +   G     ++D+G GM      EE    +
Sbjct: 31  TRPNHLAQEVIDNSIDEAMAGFARRVDVELHNDG--SLSVSDDGRGMPVDIHPEEGVSGV 88

Query: 69  PMAVQR-HCTSKISD 82
            + + R H   K S+
Sbjct: 89  ELILTRLHAGGKFSN 103


>gi|288818142|ref|YP_003432490.1| histidine kinase sensor protein [Hydrogenobacter thermophilus TK-6]
 gi|288787542|dbj|BAI69289.1| histidine kinase sensor protein [Hydrogenobacter thermophilus TK-6]
 gi|308751743|gb|ADO45226.1| multi-sensor signal transduction histidine kinase [Hydrogenobacter
           thermophilus TK-6]
          Length = 634

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 31  IENSLDA--ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           IEN++DA  +  +VE  +   G S+   + D G G+  E++    +   T+K
Sbjct: 541 IENAIDASEQGQKVEIKLRREGDSYVWIVRDYGKGIADEDLSKVFEPFYTTK 592


>gi|242243251|ref|ZP_04797696.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
 gi|242233200|gb|EES35512.1| DNA gyrase subunit B [Staphylococcus epidermidis W23144]
 gi|319399910|gb|EFV88156.1| DNA gyrase, B subunit [Staphylococcus epidermidis FRI909]
          Length = 643

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E +I     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYASHIEVIIEKD--NWIKVTDNGRGIPVD 89


>gi|254508345|ref|ZP_05120467.1| sensor kinase CitA [Vibrio parahaemolyticus 16]
 gi|219548759|gb|EED25762.1| sensor kinase CitA [Vibrio parahaemolyticus 16]
          Length = 516

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 30  LIENSLDAE----SSR--VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ +A     +S   V  +I   G     +++DNG G++ +       R  TSK
Sbjct: 413 LIDNAFEATLKNPASEKVVNVLITDAGSDLVIEVSDNGCGISDDIASTIFSRGVTSK 469


>gi|254415204|ref|ZP_05028966.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178010|gb|EDX73012.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 700

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIP---M 70
           E+I  P   I EL++NS DA++++    +      GG     I+DNG GM    I     
Sbjct: 36  ELIPNPDQGIIELVKNSYDADATQCTVELINTDTTGG--SILISDNGIGMDLAAISEGWF 93

Query: 71  AVQRHCTSKIS----DDFSNI----HTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA 122
            + R   SK +         +       G     L ++   S + L +RP      A   
Sbjct: 94  VLGR---SKKAAREPTALGRLPVGDKGLGR----LAALRQGSKVQLKTRPKNEP--AVEY 144

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPA 153
                       ++      +V+     +P 
Sbjct: 145 SLTINWQDFEQASVVEDISFDVQKDMANLPQ 175


>gi|297803624|ref|XP_002869696.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315532|gb|EFH45955.1| hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 709

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD---AESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD   + ++ V+  +      G     I DNG GM  E++   +    +  SK+
Sbjct: 185 ELLDNALDEVASGATYVKVDMLENKKAGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKL 244

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 245 AN---TIGQYG 252


>gi|188584649|ref|YP_001916194.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349336|gb|ACB83606.1| DNA gyrase subunit B [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 640

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   +  G K   ++TDNG G+  ++ P   +         
Sbjct: 46  VHEVVDNSIDEAMAGYCDDIRIKLEPGNK--VRVTDNGRGIPVKDHPKIKKPTLEVIMTY 103

Query: 75  -HCTSKISDDFSNIH 88
            H   K S+D   + 
Sbjct: 104 LHAGGKFSNDSYKVS 118


>gi|257885591|ref|ZP_05665244.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
 gi|257821447|gb|EEV48577.1| DNA gyrase B subunit [Enterococcus faecium 1,231,501]
          Length = 648

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++  +I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEVLAGFATKIHVIIEKD--NSITVIDDGRGIPVD 89


>gi|126179532|ref|YP_001047497.1| DNA topoisomerase VI subunit B [Methanoculleus marisnigri JR1]
 gi|125862326|gb|ABN57515.1| DNA topoisomerase VI, B subunit [Methanoculleus marisnigri JR1]
          Length = 600

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 60/192 (31%), Gaps = 45/192 (23%)

Query: 27  IKELIENSLDA--ESS---RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           IKE ++N+LDA  E+     +   I           + DNG G+  E +P+        K
Sbjct: 40  IKEAVDNALDACEEAEVLPDIFVGIKKVDNEVYRITVEDNGPGIVPENVPLVFG-----K 94

Query: 80  I--SDDFSNIH-TFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISGEKI 128
           +     F  I  + G +G  +    AV  + LT      ++SR        +  +     
Sbjct: 95  LLYGSRFHQIRQSRGQQGIGIS--AAVLYAQLTTGIPTLVVSRTGAKARAHRFELLIRTE 152

Query: 129 --------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                             GT +E++             KS       + D +R  AI  P
Sbjct: 153 TNEPEIISHEEIDWDRTHGTRIEIQ------------FKSTLAAKKRLVDYLRLTAIVNP 200

Query: 181 KVSFTFSTIKSN 192
               T       
Sbjct: 201 HARITADIDGEM 212


>gi|66391456|ref|YP_238981.1| DNA-dependent ATPase [Enterobacteria phage RB43]
 gi|62288544|gb|AAX78527.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 630

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 18  EIIERPSIAIKELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E +E     I E+++NS+D         ++R+E  I         I+DNG G+  +++ 
Sbjct: 64  EYVEGLVKIINEILDNSIDEAIRTDFKFANRIEVKIDHN---LVTISDNGRGIPQDDVR 119


>gi|69246710|ref|ZP_00604078.1| DNA gyrase, B subunit [Enterococcus faecium DO]
 gi|227550644|ref|ZP_03980693.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257878650|ref|ZP_05658303.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
 gi|257881316|ref|ZP_05660969.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
 gi|257888091|ref|ZP_05667744.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
 gi|257890533|ref|ZP_05670186.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
 gi|257893108|ref|ZP_05672761.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
 gi|257896291|ref|ZP_05675944.1| DNA gyrase B subunit [Enterococcus faecium Com12]
 gi|257899275|ref|ZP_05678928.1| DNA gyrase B subunit [Enterococcus faecium Com15]
 gi|258615266|ref|ZP_05713036.1| DNA gyrase subunit B [Enterococcus faecium DO]
 gi|260558231|ref|ZP_05830427.1| DNA gyrase B subunit [Enterococcus faecium C68]
 gi|261206921|ref|ZP_05921610.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
 gi|289566502|ref|ZP_06446926.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
 gi|293379372|ref|ZP_06625516.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
 gi|293553551|ref|ZP_06674178.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
 gi|293563255|ref|ZP_06677707.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
 gi|293569155|ref|ZP_06680461.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
 gi|293572722|ref|ZP_06683686.1| DNA gyrase, B subunit [Enterococcus faecium E980]
 gi|294616655|ref|ZP_06696426.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
 gi|294619749|ref|ZP_06699154.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
 gi|294623763|ref|ZP_06702591.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
 gi|314940127|ref|ZP_07847307.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
 gi|314943042|ref|ZP_07849846.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
 gi|314948160|ref|ZP_07851556.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
 gi|314953426|ref|ZP_07856344.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
 gi|314993835|ref|ZP_07859171.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
 gi|314998140|ref|ZP_07863022.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
 gi|68195124|gb|EAN09583.1| DNA gyrase, B subunit [Enterococcus faecium DO]
 gi|227180223|gb|EEI61195.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257812878|gb|EEV41636.1| DNA gyrase B subunit [Enterococcus faecium 1,230,933]
 gi|257816974|gb|EEV44302.1| DNA gyrase B subunit [Enterococcus faecium 1,231,502]
 gi|257824145|gb|EEV51077.1| DNA gyrase B subunit [Enterococcus faecium 1,141,733]
 gi|257826893|gb|EEV53519.1| DNA gyrase B subunit [Enterococcus faecium 1,231,410]
 gi|257829487|gb|EEV56094.1| DNA gyrase B subunit [Enterococcus faecium 1,231,408]
 gi|257832856|gb|EEV59277.1| DNA gyrase B subunit [Enterococcus faecium Com12]
 gi|257837187|gb|EEV62261.1| DNA gyrase B subunit [Enterococcus faecium Com15]
 gi|260075405|gb|EEW63711.1| DNA gyrase B subunit [Enterococcus faecium C68]
 gi|260078549|gb|EEW66251.1| DNA gyrase B subunit [Enterococcus faecium TC 6]
 gi|289161711|gb|EFD09587.1| DNA gyrase, B subunit [Enterococcus faecium D344SRF]
 gi|291588124|gb|EFF19966.1| DNA gyrase, B subunit [Enterococcus faecium E1071]
 gi|291590475|gb|EFF22213.1| DNA gyrase, B subunit [Enterococcus faecium E1636]
 gi|291594019|gb|EFF25488.1| DNA gyrase, B subunit [Enterococcus faecium E1679]
 gi|291596717|gb|EFF27940.1| DNA gyrase, B subunit [Enterococcus faecium U0317]
 gi|291602306|gb|EFF32531.1| DNA gyrase, B subunit [Enterococcus faecium E1039]
 gi|291604794|gb|EFF34276.1| DNA gyrase, B subunit [Enterococcus faecium E1162]
 gi|291607214|gb|EFF36572.1| DNA gyrase, B subunit [Enterococcus faecium E980]
 gi|292641895|gb|EFF60061.1| DNA gyrase, B subunit [Enterococcus faecium PC4.1]
 gi|313587852|gb|EFR66697.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a01]
 gi|313591726|gb|EFR70571.1| DNA gyrase, B subunit [Enterococcus faecium TX0133B]
 gi|313594529|gb|EFR73374.1| DNA gyrase, B subunit [Enterococcus faecium TX0133A]
 gi|313598242|gb|EFR77087.1| DNA gyrase, B subunit [Enterococcus faecium TX0133C]
 gi|313640632|gb|EFS05212.1| DNA gyrase, B subunit [Enterococcus faecium TX0133a04]
 gi|313645414|gb|EFS09994.1| DNA gyrase, B subunit [Enterococcus faecium TX0082]
          Length = 648

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++  +I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEVLAGFATKIHVIIEKD--NSITVIDDGRGIPVD 89


>gi|160941018|ref|ZP_02088357.1| hypothetical protein CLOBOL_05912 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436108|gb|EDP13875.1| hypothetical protein CLOBOL_05912 [Clostridium bolteae ATCC
           BAA-613]
          Length = 346

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 26  AIKELIENSLD--AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           A+  L++N+LD   + S V              I DNG G+  E++    +R   S+ S 
Sbjct: 242 AVSNLVKNALDHTEKGSFVRIEWQAFASVVQITIKDNGCGIHPEDLHHIFKRFYRSRFSK 301

Query: 83  DFSNIH 88
           D   I 
Sbjct: 302 DTQGIG 307


>gi|258546265|ref|ZP_05706499.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826]
 gi|258518531|gb|EEV87390.1| DNA gyrase subunit B [Cardiobacterium hominis ATCC 15826]
          Length = 800

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 88/281 (31%), Gaps = 34/281 (12%)

Query: 2   KIRKLSEKIINQIAAGEIIER------PSIAIKELIENSLD---AE-SSRVETVIAGGGK 51
           +IR L      +I  G  I            + E+++N++D   A   + +  +I     
Sbjct: 11  RIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEINVIIHQD-- 68

Query: 52  SFFQITDNGFGMT----SEEIPMAVQ-----RHCTSKISDDFSNIHTFGFRGEALPSIGA 102
               + DNG G+      EE   A +      H   K  D+   + + G  G  +  + A
Sbjct: 69  ESITVRDNGRGIPVDIHPEEGRSAAEVIMTVLHAGGKFDDNAYKV-SGGLHGVGVSVVNA 127

Query: 103 VS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKS 160
           +S  LT+     ++    Q      +  +   +  +   T  E+        A  +   +
Sbjct: 128 LSERLTMT--IKRDGHIHQQTYRHGEPQAPLAIIGDSDSTGTEI-----NFLASSDTFGT 180

Query: 161 EQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
              + + +   +R ++     V       +S++ ++                       +
Sbjct: 181 VIYDYDTLAQRLRELSFLNAGVRIELRDERSDKNQIFQYEGGVKAFVEYQNRNKTPIHPS 240

Query: 221 AVELNEKSNEITLQGYTGIPTFNRGNANQFYVFINGRTVQD 261
                   + + ++       +N   A   Y F N    +D
Sbjct: 241 IFYCAADKDGVAVEIAL---QWNDSYAENVYCFTNNIPQRD 278


>gi|240146837|ref|ZP_04745438.1| putative heat shock protein [Roseburia intestinalis L1-82]
 gi|257201023|gb|EEU99307.1| putative heat shock protein [Roseburia intestinalis L1-82]
 gi|291534423|emb|CBL07535.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
          [Roseburia intestinalis M50/1]
          Length = 771

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGK--SFFQITDNGFGMTSEEIP 69
          A+ EL++N+ DA + RV+ +        S   I D+G GM   +I 
Sbjct: 32 AVFELVKNAYDAGAKRVDIIFENVNTLNSKLIIKDDGKGMDLPDIR 77


>gi|47225232|emb|CAG09732.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 514

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 23 PSIAIKELIENSLDAE--SSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT- 77
          P  A+ EL++N+ D    + +  ++  +   G+     TDNG GMT  ++   +    T 
Sbjct: 14 PFSAVAELVDNASDPGVCAKQMWIDV-VEEEGQLCLTFTDNGCGMTPNKLHKMLSFGFTE 72

Query: 78 ---SKISDDFSNIHTFGFR 93
             SK+S     ++  GF+
Sbjct: 73 KGSSKVSQQAIGLYGNGFK 91


>gi|229818508|ref|YP_002880034.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333]
 gi|229564421|gb|ACQ78272.1| DNA gyrase, B subunit [Beutenbergia cavernae DSM 12333]
          Length = 685

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R++  +   GG    ++ D+G G+  +
Sbjct: 56 VSEVVDNSVDEALAGYATRIDVTLTEDGG---VRVVDDGRGIPVD 97


>gi|206895598|ref|YP_002246982.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738215|gb|ACI17293.1| DNA gyrase, B subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 637

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 20/197 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQR-H 75
           E+++N++D   A     ++ V+   G     + DNG G+  E         + + + + H
Sbjct: 46  EIVDNAIDEAMAGFCDHIKVVLYKDG--SVLVEDNGRGIPVEIHPQEGRPTVEVVLTKLH 103

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K         + G  G  L  + A+S  L +  +        Q    G+ ++ V+ +
Sbjct: 104 AGGKFGGQAYK-ASGGLHGVGLSVVNALSEWLEITVK-RDGTVYWQRYEFGKPVTEVKEI 161

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T      + F      +     + +  +I   +R +A    +V+       S   
Sbjct: 162 GQYDDTESSATIVQFK--PDKSIFADTRFDYEVIRQRLRELAFLNSEVTIELQREGSEPE 219

Query: 195 KMNFQSTNGNFPERISQ 211
             +F+S      E ++ 
Sbjct: 220 FFHFESGLAGLLEEVAN 236


>gi|304320769|ref|YP_003854412.1| putative ATPase [Parvularcula bermudensis HTCC2503]
 gi|303299671|gb|ADM09270.1| putative ATPase [Parvularcula bermudensis HTCC2503]
          Length = 1418

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 78/227 (34%), Gaps = 11/227 (4%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++ P   I EL++N+ DA ++     I  G   F     NG   T E      +   ++K
Sbjct: 39  VQSPRHIISELLQNADDAHATEASVDIQDGSFLFSH---NGEDFTEEHFASLCKFGYSNK 95

Query: 80  ISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
                  +HT GFRG    S  ++   + L +         +       +++        
Sbjct: 96  -----RALHTIGFRGIGFKSTFSLGERVELYTPTLSVGFDQKRFTEPFWMNNGSVNRDRT 150

Query: 139 GTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRMAIAYPKVSFTFSTIKS-NRYKM 196
              V + D       R N  +  +   + L    IRR+ I   +V +        +  + 
Sbjct: 151 TVRVSISDEHRETEVRKNLEEWLKSPVSLLFFRNIRRITIGGKEVHWGSFGDGPVDGTEW 210

Query: 197 NFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
                N +    +++   EDF  +A+    +   +  +    +P  +
Sbjct: 211 LALQENPDKQFLLARSAPEDFPEDALREIRQERMVGAEQNMALPPCH 257


>gi|329666396|gb|AEB92344.1| DNA gyrase subunit B [Lactobacillus johnsonii DPC 6026]
          Length = 655

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 59 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 98


>gi|323465562|gb|ADX69249.1| DNA gyrase subunit B [Lactobacillus helveticus H10]
          Length = 613

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 17 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 56


>gi|295425411|ref|ZP_06818109.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          amylolyticus DSM 11664]
 gi|295064913|gb|EFG55823.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          amylolyticus DSM 11664]
          Length = 653

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 57 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 96


>gi|260101874|ref|ZP_05752111.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          helveticus DSM 20075]
 gi|260084302|gb|EEW68422.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          helveticus DSM 20075]
 gi|328468764|gb|EGF39735.1| DNA gyrase subunit B [Lactobacillus helveticus MTCC 5463]
          Length = 654

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 97


>gi|227889153|ref|ZP_04006958.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
          33200]
 gi|268318566|ref|YP_003292222.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785]
 gi|227850382|gb|EEJ60468.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
          33200]
 gi|262396941|emb|CAX65955.1| DNA gyrase, subunit B [Lactobacillus johnsonii FI9785]
          Length = 655

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 59 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 98


>gi|300362674|ref|ZP_07058850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          gasseri JV-V03]
 gi|300353665|gb|EFJ69537.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          gasseri JV-V03]
          Length = 655

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 59 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 98


>gi|161506639|ref|YP_001576587.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347628|gb|ABX26302.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 654

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 97


>gi|42518089|ref|NP_964019.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533]
 gi|41582373|gb|AAS07985.1| DNA gyrase subunit B [Lactobacillus johnsonii NCC 533]
          Length = 655

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 59 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 98


>gi|116628688|ref|YP_813860.1| DNA gyrase, B subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853343|ref|ZP_04643723.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4]
 gi|282852320|ref|ZP_06261662.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1]
 gi|311111572|ref|ZP_07712969.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22]
 gi|116094270|gb|ABJ59422.1| DNA gyrase subunit B [Lactobacillus gasseri ATCC 33323]
 gi|238834031|gb|EEQ26288.1| DNA gyrase, B subunit [Lactobacillus gasseri 202-4]
 gi|282556062|gb|EFB61682.1| DNA gyrase, B subunit [Lactobacillus gasseri 224-1]
 gi|311066726|gb|EFQ47066.1| DNA gyrase, B subunit [Lactobacillus gasseri MV-22]
          Length = 655

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 59 EIIDNSIDERLAGFATKIEITVNEDG--SVTVQDDGRGIPVD 98


>gi|322411454|gb|EFY02362.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEAD--NSITVVDNGRGIPVD 90


>gi|251782113|ref|YP_002996415.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242390742|dbj|BAH81201.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEAD--NSITVVDNGRGIPVD 90


>gi|156888541|gb|ABU96675.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis]
 gi|156888543|gb|ABU96676.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis]
 gi|156888545|gb|ABU96677.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis]
          Length = 621

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEAD--NSITVVDNGRGIPVD 90


>gi|156888537|gb|ABU96673.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis]
          Length = 621

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEAD--NSITVVDNGRGIPVD 90


>gi|156888535|gb|ABU96672.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis]
 gi|156888539|gb|ABU96674.1| DNA gyrase subunit B [Streptococcus dysgalactiae subsp.
          equisimilis]
          Length = 621

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEAD--NSITVVDNGRGIPVD 90


>gi|312142414|ref|YP_003993860.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903065|gb|ADQ13506.1| DNA gyrase, B subunit [Halanaerobium sp. 'sapolanicus']
          Length = 640

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          E     + E+++NS+D   A   + +   I  G     ++ DNG G+  E  P 
Sbjct: 37 EGLHHLVYEVVDNSIDEAMAGYCTEIIVEIQPGNI--IKVKDNGRGIPVENHPK 88


>gi|307609486|emb|CBW98983.1| topoisomerase IV subunit B [Legionella pneumophila 130b]
          Length = 626

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +SR+   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFASRIIVTLHEDG--SIEVEDDGRGMPVD 77


>gi|296106278|ref|YP_003617978.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99
          Alcoy]
 gi|295648179|gb|ADG24026.1| DNA topoisomerase IV subunit B [Legionella pneumophila 2300/99
          Alcoy]
          Length = 626

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +SR+   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFASRIIVTLHEDG--SIEVEDDGRGMPVD 77


>gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 561

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           +R    +  L++N+L   D  S  V+        +   + D G G+  +++P   +R   
Sbjct: 454 DRIEQVLTNLVDNALRHTDEGSVTVKVE-KEPTFAKISVQDTGHGIPQDDLPYVFERFY- 511

Query: 78  SKISDDFSNIHTFGFRGEALPSIG 101
                D +   + G  G  L  I 
Sbjct: 512 ---KADKARTRSKGGTGLGLA-IA 531


>gi|9971917|gb|AAG10479.1|AF279106_41 predicted topoisomerase IV subunit B [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 631

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 29/213 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP-------- 69
            P+  I+E+++NS+D   +   S ++  +   G  F +++D+G GM  +E P        
Sbjct: 32  NPNHLIQEVLDNSVDEALSGYCSNIKVSVLKDG--FIKVSDDGRGMPIDEHPEHKVSGVE 89

Query: 70  -MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
            +  + H  +K S D  N  + G  G  +  + A+S   L  R  +++   QI  +    
Sbjct: 90  LILCKLHAGAKFSGDDYN-FSGGLHGVGVSVVNALSD-ELEVRVKRDSKEYQITFNNGDK 147

Query: 129 SSVRPVAM-----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
           SS           N GT ++    F   P     ++ +  +      +++  A+  P ++
Sbjct: 148 SSELKPIGEVGLRNSGTSIK----FKPNPTYFETIEIQIKQLKH---LLKAKAVLCPGLT 200

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
             F   K    K  +   +G     I    G D
Sbjct: 201 IEFVNEKKTDDKQKWYFEDGLKSYLIDSSEGAD 233


>gi|52840928|ref|YP_094727.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52628039|gb|AAU26780.1| DNA topoisomerase IV subunit B [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 626

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +SR+   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFASRIIVTLHEDG--SIEVEDDGRGMPVD 77


>gi|54293674|ref|YP_126089.1| DNA topoisomerase IV subunit B [Legionella pneumophila str. Lens]
 gi|53753506|emb|CAH14961.1| Topoisomerase IV subunit B [Legionella pneumophila str. Lens]
          Length = 626

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +SR+   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFASRIIVTLHEDG--SIEVEDDGRGMPVD 77


>gi|54296715|ref|YP_123084.1| DNA topoisomerase IV subunit B [Legionella pneumophila str.
          Paris]
 gi|148360657|ref|YP_001251864.1| DNA topoisomerase IV subunit B [Legionella pneumophila str.
          Corby]
 gi|53750500|emb|CAH11894.1| Topoisomerase IV subunit B [Legionella pneumophila str. Paris]
 gi|148282430|gb|ABQ56518.1| DNA topoisomerase IV subunit B [Legionella pneumophila str.
          Corby]
          Length = 626

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +SR+   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFASRIIVTLHEDG--SIEVEDDGRGMPVD 77


>gi|89069857|ref|ZP_01157191.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola granulosus HTCC2516]
 gi|89044533|gb|EAR50652.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola granulosus HTCC2516]
          Length = 569

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N+LDA  ++      ++ ++A G      + DNG G+  E++    +  
Sbjct: 457 RLEQVIINLLRNALDA--TKSAEDPQIDILLAAGETVRLTVRDNGPGI--EDLDALFEPF 512

Query: 76  CTSK 79
            T+K
Sbjct: 513 YTTK 516


>gi|117919787|ref|YP_868979.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           ANA-3]
 gi|117612119|gb|ABK47573.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           ANA-3]
          Length = 360

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S A+  L+ NSL+A +++++ V +   +     + DNG G+ ++     ++   T+K
Sbjct: 249 LSSAVNNLVMNSLEAGATQIQIVASDSNEQLHLNVIDNGKGLDAKMQQKVLEPFFTTK 306


>gi|302871903|ref|YP_003840539.1| histidine kinase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574762|gb|ADL42553.1| histidine kinase [Caldicellulosiruptor obsidiansis OB47]
          Length = 185

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS++A +S V+  IA   K       I DNG G+  + I        T
Sbjct: 11 LVQNSIEAGASLVKIKIAEDLKEDLFTITIEDNGRGIPQDVIDKVTDPFYT 61


>gi|325676389|ref|ZP_08156068.1| chaperone HtpG [Rhodococcus equi ATCC 33707]
 gi|325552950|gb|EGD22633.1| chaperone HtpG [Rhodococcus equi ATCC 33707]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 82/266 (30%), Gaps = 49/266 (18%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA              E+      +E  +    ++   + DNG GM+ +E+
Sbjct: 33  LRELVSNASDALDKLKLEAYRDKDLEADTSDLHIELEVDADTRTL-TVRDNGIGMSRDEV 91

Query: 69  PMAVQRHCTS-------KISDDFSNIHT--------FGFRGEALPSIGAVS-HLTLMSRP 112
              +     S       K+ +      +         GF      S   V+  +TL++R 
Sbjct: 92  IDLIGTLAKSGTAELRRKLREAKDAAASEELIGQFGIGF-----YSTFMVADKVTLLTRK 146

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVE-------VRDLFFTIPARLNFLKSEQVE 164
                G +   SG+   ++  V     GT V        V D  +   +     +  +  
Sbjct: 147 AGEKHGTRWESSGDATYTIETVDDAPQGTSVTLHLKPEDVEDHLYDYASERKLREIVKRY 206

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL 224
           ++ I   + RM +  P          +    +    T  +     ++   E   +   E 
Sbjct: 207 SDFIAYPV-RMQVERPAPKTDDDADDAAPKTVVETETLNSMKALWARPRSEVTDDEYNEF 265

Query: 225 NEKSNEITLQGYTGIPTFNRGNANQF 250
            +  +         IP    G     
Sbjct: 266 YKHVSHSWDDPLEVIPMKAEGTFEYQ 291


>gi|226315215|ref|YP_002775111.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098165|dbj|BAH46607.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 518

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L+ NS  A ++++   +          ITDNG G+   E+P   +R+ 
Sbjct: 418 LLGNSAAANATQINIGVHNPSDFLSIDITDNGKGIPESEVPFIFERYY 465


>gi|225174724|ref|ZP_03728722.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169851|gb|EEG78647.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 530

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 20  IERPSIAIKELIENSLDAESSR---VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ++R    I+ L++N++  ++++   ++  +    K     I DNG G+  +E+P    R 
Sbjct: 416 VDRMEQIIRNLLKNAI--KATKDGTIKVGVEEQQKQVILTIADNGIGIPPDELPHIWDRF 473

Query: 76  C 76
            
Sbjct: 474 Y 474


>gi|94987227|ref|YP_595160.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731476|emb|CAJ54839.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 799

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIPMA----VQ 73
           + E+I+NS+D   A   +R++ V+     +   + DNG G+       E +P       +
Sbjct: 46  VYEVIDNSIDEAMAGFCTRIDVVLHLD--NSITVRDNGRGIPVDIHPKEGVPAVQVVMTK 103

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM 109
            H   K  +D   + + G  G  L  + A+S  L + 
Sbjct: 104 LHAGGKFDNDTYKV-SGGLHGVGLSCVNALSEQLEVT 139


>gi|54303598|ref|YP_133591.1| hypothetical protein PBPRB1944 [Photobacterium profundum SS9]
 gi|46917029|emb|CAG23791.1| hypothetical protein PBPRB1944 [Photobacterium profundum SS9]
          Length = 322

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA     + ++   +          + DNG G+ +E+I        
Sbjct: 214 RLEQVLVNLISNAIDAVEHNPAPQIIITVGESLSMVQIIVKDNGAGIPAEDILHIFDPFY 273

Query: 77  TSKIS 81
           T K+S
Sbjct: 274 TRKVS 278


>gi|325273381|ref|ZP_08139641.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas sp. TJI-51]
 gi|324101484|gb|EGB99070.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas sp. TJI-51]
          Length = 276

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  I   G +    + D+G G+   ++        
Sbjct: 164 RLEQVLINLLRNALDAMADKRYKRLEIRIEADGARWRLSVLDSGGGIAEADLAKVFDPFF 223

Query: 77  TSK 79
           T+K
Sbjct: 224 TTK 226


>gi|229587582|ref|YP_002869701.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25]
 gi|229359448|emb|CAY46289.1| DNA gyrase subunit B [Pseudomonas fluorescens SBW25]
          Length = 805

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 DSESTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       E  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|84997968|ref|XP_953705.1| hypothetical protein [Theileria annulata]
 gi|65304702|emb|CAI73027.1| hypothetical protein TA16155 [Theileria annulata]
          Length = 329

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 28 KELIENSLDA-----ESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKI 80
          KELIEN++DA     +  +++  +        +I   D+G G+    I        +SK 
Sbjct: 28 KELIENAIDACKDEQKEHKIKLQLKKN-DDVIEIQCFDDGSGINPNSIESIGHIFNSSK- 85

Query: 81 SDDFSNIHTFG 91
            D     TFG
Sbjct: 86 -SDQETSGTFG 95


>gi|120402832|ref|YP_952661.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955650|gb|ABM12655.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R +  +  L++N+L    A   RVE      G     ++ DNG G+ +E +P   +R  
Sbjct: 269 QRLAQVVGNLVDNALRHTPAG-GRVEVSWEREGAELALRVADNGAGIAAEHLPRLFERFY 327


>gi|75677095|ref|YP_319516.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421965|gb|ABA06164.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 456

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 10/51 (19%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+EN+L     D   + ++ VI+  G     + DNG G+   +  +  QR 
Sbjct: 359 LVENALHHTPED---TTIQIVISADG--SISVIDNGDGVPVADRKLVFQRF 404


>gi|302340164|ref|YP_003805370.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301637349|gb|ADK82776.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 183

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 30 LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMA 71
          L++NS++A++S +E       +     + DNG GM+ +E+  A
Sbjct: 12 LVQNSIEAKASLIELSFDEDERQIAVTLRDNGCGMSKQELERA 54


>gi|77818870|gb|ABB04019.1| rhabdomyosarcoma antigen MU-RMS-40.10B [Homo sapiens]
          Length = 584

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 28/267 (10%)

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNA--VELNEKSNEITLQGYTGIPTF-----N 243
           ++  +++ +S   +    +  V+G   +NN    + + + ++I L G+           +
Sbjct: 31  NHPGQISQKSKVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFLPKCDADHSFTS 90

Query: 244 RGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLGRYPVVVLLLEIDPRQVDVNVH 300
                + ++FIN R V  K IL  IR  Y           YPV  L +++    VDVN+ 
Sbjct: 91  LSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTADVDVNLT 150

Query: 301 PAKSYIRFRNPTIIRNFIIQSIQKAI-----------NKKGISTSSVLSKKMISS---FH 346
           P KS +  +N   +   +   +               NK  +S + ++  K   +   F+
Sbjct: 151 PDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNKTDVSAADIVLSKTAETDVLFN 210

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD----DPTYSEDNDPVEESEAT 402
           +  +   +     TS+   Q  +   E+  +T+D L       D  Y   +  +   +  
Sbjct: 211 KVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQISIGDFGYGHCSSEISNIDKN 270

Query: 403 HYQLGIACAQIHQNYIISQTTDGLVIV 429
                   +  + ++  SQT       
Sbjct: 271 TKNAFQDISMSNVSWENSQTEYSKTCF 297


>gi|254247104|ref|ZP_04940425.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Burkholderia cenocepacia PC184]
 gi|124871880|gb|EAY63596.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Burkholderia cenocepacia PC184]
          Length = 669

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 549 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSAATLALEVRDNGSGIAPDLLPRLFEPFF 608

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 609 TTK---------EMG-RGLGLGLAISSSIAS 629


>gi|332685540|ref|YP_004455314.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
 gi|332369549|dbj|BAK20505.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
          Length = 643

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +   I     +   + D+G G+  +
Sbjct: 45 EIVDNSIDEALAGFATEIRVTIEKD--NSITVVDDGRGIPVD 84


>gi|332685539|ref|YP_004455313.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
 gi|332369548|dbj|BAK20504.1| DNA gyrase subunit B [Melissococcus plutonius ATCC 35311]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +   I     +   + D+G G+  +
Sbjct: 52 EIVDNSIDEALAGFATEIRVTIEKD--NSITVVDDGRGIPVD 91


>gi|322392250|ref|ZP_08065711.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          peroris ATCC 700780]
 gi|321144785|gb|EFX40185.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          peroris ATCC 700780]
          Length = 648

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIEVFIEPD--DSITVIDDGRGIPVD 88


>gi|322388186|ref|ZP_08061790.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          infantis ATCC 700779]
 gi|321140858|gb|EFX36359.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          infantis ATCC 700779]
          Length = 648

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIEVFIEPD--DSITVIDDGRGIPVD 88


>gi|212634364|ref|YP_002310889.1| ATPase-like histidine kinase A [Shewanella piezotolerans WP3]
 gi|212555848|gb|ACJ28302.1| ATP-binding region, ATPase-like:Histidine kinase A [Shewanella
           piezotolerans WP3]
          Length = 359

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++++         +    + DNG G+ S+     ++   T+K
Sbjct: 249 LSSAINNLVVNSIEAGATKIVIKTYDTATALHIDVIDNGKGLDSDMQQQVLEPFFTTK 306


>gi|170742474|ref|YP_001771129.1| DNA topoisomerase IV subunit B [Methylobacterium sp. 4-46]
 gi|168196748|gb|ACA18695.1| DNA topoisomerase IV, B subunit [Methylobacterium sp. 4-46]
          Length = 682

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +  GG     +TDNG G+  +
Sbjct: 77  EVIDNSMDEAVAGHATFIEVELEEGGI--LSVTDNGRGIPVD 116


>gi|148266452|ref|YP_001245395.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392485|ref|YP_001315160.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|147739521|gb|ABQ47819.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus JH9]
 gi|149944937|gb|ABR50873.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus JH1]
          Length = 640

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYANKIEVVIEKD--NWIKVTDNGRGIPVD 85


>gi|153085|gb|AAA73951.1| DNA gyrase B subunit [Staphylococcus aureus]
          Length = 640

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 48 EIVDNSIDEALAGYANKIEVVIEKD--NWIKVTDNGRGIPVD 87


>gi|15922995|ref|NP_370529.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925710|ref|NP_373243.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
 gi|156978336|ref|YP_001440595.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316843|ref|ZP_04840056.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|253730404|ref|ZP_04864569.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|254663939|ref|ZP_05143411.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257793543|ref|ZP_05642522.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
 gi|258411151|ref|ZP_05681430.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
 gi|258420945|ref|ZP_05683879.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
 gi|258438584|ref|ZP_05689807.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
 gi|258443960|ref|ZP_05692298.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
 gi|258446224|ref|ZP_05694384.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
 gi|258449117|ref|ZP_05697223.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
 gi|258454405|ref|ZP_05702373.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
 gi|269201695|ref|YP_003280964.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894284|ref|ZP_06302514.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
 gi|282927755|ref|ZP_06335369.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
 gi|295406869|ref|ZP_06816673.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
 gi|296275682|ref|ZP_06858189.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MR1]
 gi|297245904|ref|ZP_06929766.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
 gi|54037243|sp|P66937|GYRB_STAAN RecName: Full=DNA gyrase subunit B
 gi|54041556|sp|P66936|GYRB_STAAM RecName: Full=DNA gyrase subunit B
 gi|13699922|dbj|BAB41221.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus N315]
 gi|14245772|dbj|BAB56167.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720471|dbj|BAF76888.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725884|gb|EES94613.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|257787515|gb|EEV25855.1| DNA gyrase, B subunit [Staphylococcus aureus A9781]
 gi|257840036|gb|EEV64501.1| DNA gyrase subunit B [Staphylococcus aureus A9763]
 gi|257843135|gb|EEV67550.1| DNA gyrase, B subunit [Staphylococcus aureus A9719]
 gi|257848143|gb|EEV72135.1| hypothetical protein SAKG_01059 [Staphylococcus aureus A9299]
 gi|257850844|gb|EEV74788.1| hypothetical protein SAJG_01378 [Staphylococcus aureus A8115]
 gi|257855050|gb|EEV77993.1| DNA gyrase, B subunit [Staphylococcus aureus A6300]
 gi|257857550|gb|EEV80445.1| DNA gyrase, B subunit [Staphylococcus aureus A6224]
 gi|257863499|gb|EEV86259.1| DNA gyrase, B subunit [Staphylococcus aureus A5937]
 gi|262073985|gb|ACY09958.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282590515|gb|EFB95593.1| DNA gyrase, B subunit [Staphylococcus aureus A10102]
 gi|282763329|gb|EFC03459.1| DNA gyrase, B subunit [Staphylococcus aureus A8117]
 gi|285815732|gb|ADC36219.1| DNA gyrase subunit B [Staphylococcus aureus 04-02981]
 gi|294968334|gb|EFG44359.1| hypothetical protein SMAG_02042 [Staphylococcus aureus A8819]
 gi|297177269|gb|EFH36522.1| hypothetical protein SLAG_01998 [Staphylococcus aureus A8796]
 gi|312828568|emb|CBX33410.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ECT-R
          2]
 gi|315129548|gb|EFT85540.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725845|gb|EGG62324.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21172]
 gi|329732607|gb|EGG68957.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 644

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANKIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|154244262|ref|YP_001415220.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154158347|gb|ABS65563.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 444

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 30  LIENSLDAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTS----KISDD 83
           L+EN++D  ++RV+        G     + D+G G + E      Q + TS    ++ +D
Sbjct: 325 LVENAVDFAATRVDISAQWSFAGLD-IVVADDGPGFSPEVSGRIGQPYVTSRARDRLEED 383

Query: 84  FSNIHTFGF 92
             +    GF
Sbjct: 384 GESGLGLGF 392


>gi|260584261|ref|ZP_05852008.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
 gi|260157779|gb|EEW92848.1| DNA gyrase, B subunit [Granulicatella elegans ATCC 700633]
          Length = 645

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  I    ++  ++TD+G G+  +
Sbjct: 49 EIVDNSIDEALAGFATHIEIEITP--ENHIRVTDDGRGIPVD 88


>gi|163868608|ref|YP_001609817.1| DNA topoisomerase IV subunit B [Bartonella tribocorum CIP 105476]
 gi|161018264|emb|CAK01822.1| topoisomerase protein [Bartonella tribocorum CIP 105476]
          Length = 688

 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  +E  +   G  +  +TDNG G+  E  P
Sbjct: 85  EIIDNAMDEAVAGYADSIEVSLDRNG--YITVTDNGRGIPVENHP 127


>gi|315633998|ref|ZP_07889287.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis
          ATCC 33393]
 gi|315477248|gb|EFU67991.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aggregatibacter segnis
          ATCC 33393]
          Length = 634

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 32 TRPNHLAQEVIDNSVDEALAGFATKIEVILHKD--QSIEVTDNGRGMPVD 79


>gi|294790228|ref|ZP_06755386.1| DNA gyrase, B subunit [Scardovia inopinata F0304]
 gi|294458125|gb|EFG26478.1| DNA gyrase, B subunit [Scardovia inopinata F0304]
          Length = 703

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 6/47 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I  G  +  Q+ D+G G+  +E+P
Sbjct: 78  VYEIVDNSVDEALAGYASHIEVTILSG--NGIQVVDDGRGIPVDEVP 122


>gi|218462929|ref|ZP_03503020.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium etli Kim 5]
          Length = 192

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 26  AIKELIENSLDAESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ N++D   +R  +   ++  G     +TD G G+ +E   + ++   
Sbjct: 97  AVSNLVRNAIDHGGNRGMITVAVSDAGGGRISVTDEGPGIPAEHRELVLEPFY 149


>gi|190710555|gb|ACE95108.1| gyrase subunit B [Bacillus thuringiensis serovar monterrey]
          Length = 627

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A    ++   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDQINVSIEEY--NSIRVTDNGRGIP 77


>gi|148508004|gb|ABQ75803.1| DNA topoisomerase VI subunit B [uncultured haloarchaeon]
          Length = 786

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 40/184 (21%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR-HCTSK 79
           +KE ++N+LDA  E+     V   I+     +   + DNG G+  + +P    +    S+
Sbjct: 55  VKEAVDNALDATEEAGILPSVTVEISESESYYTLVVEDNGPGIPEKNVPKVFGKLLYGSR 114

Query: 80  ISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIA--------I 123
                    + G +G  +    AV  S LT      + SRP  N+T  Q+          
Sbjct: 115 FGS---LTQSRGQQGIGIS--AAVLYSQLTSGKPAVITSRPKGNDTAFQVELTLNTDTNT 169

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
                S       + GT +E+  +   + AR             + + I+  A+  P   
Sbjct: 170 PEIHASQNINWDHSHGTRIEL-QMEANLRARKP-----------LLEYIQATAVVNPHSE 217

Query: 184 FTFS 187
            TF 
Sbjct: 218 ITFM 221


>gi|312171161|emb|CBX79420.1| hypothetical protein EAIL5_0600 [Erwinia amylovora ATCC BAA-2158]
          Length = 138

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 18/94 (19%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        A+ ELI NS+DA +S V   I   G +     D+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SIGKAVIELIMNSVDAGASMVSIDIMPEGFAC---RDDGRG 59

Query: 63 MTS-EEIPMAVQRHCT-SKISDDFSNIHTFG-FR 93
            S E++     R  T  K  D      TFG FR
Sbjct: 60 FASYEDVKRYFGRFGTPHKEGD-----ATFGRFR 88


>gi|227893834|ref|ZP_04011639.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864323|gb|EEJ71744.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 654

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  +   G     + D+G G+  +
Sbjct: 58 EIIDNSIDERLAGFATKIEVTVNEDG--SVTVQDDGRGIPVD 97


>gi|294674979|ref|YP_003575595.1| DNA gyrase subunit B [Prevotella ruminicola 23]
 gi|294471706|gb|ADE81095.1| DNA gyrase, B subunit [Prevotella ruminicola 23]
          Length = 658

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E ++NS+D   A   + +E  I     +   + DNG G+  +E   
Sbjct: 46 VNETVDNSIDEAMAGYCTHIEVTINED--NSITVQDNGRGIPVDEHEK 91


>gi|91202151|emb|CAJ75211.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 568

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 44/196 (22%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE--IPMA------- 71
           E P++ I EL++N++ A++S+++  I  G      + D+G+G  S E  + +A       
Sbjct: 19  EHPAMLITELVQNAVRAKASKIDIAIEDGTL---VVCDDGYGCDSHEPLLTLAESCWDAE 75

Query: 72  ------------VQRHC-------TSKISDDFSNIHTFGF------RGEALPSIGAVSHL 106
                          +C       TS+       I T  F      RG+AL    +V  L
Sbjct: 76  VEENEQPAGWGLFVLYCLAEKVSLTSRFGT--LTIDTALFFNDAVYRGKAL----SVGEL 129

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
              S+           +   K+  +  ++        +             +  E  +  
Sbjct: 130 VDTSKTA-EGFTISATMDSRKMKQIAGISHKRLQYFPIEITLNGDSVVRESVVEEYKDYP 188

Query: 167 LITDVIRRMAIAYPKV 182
           +    +       PK 
Sbjct: 189 IKAQYMGNDVFINPKR 204


>gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 590

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  LI+N++     D  S ++       G    +++D+G G+  E++P   +R 
Sbjct: 480 DRIEQVLTNLIDNAIRHTPED-GSVKITVKSEEKGL-MVEVSDSGSGIPEEDLPFVFERF 537

Query: 76  C 76
            
Sbjct: 538 Y 538


>gi|313890482|ref|ZP_07824110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120999|gb|EFR44110.1| DNA gyrase, B subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E +I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVIIEED--NSITVVDDGRGIPVD 90


>gi|154496136|ref|ZP_02034832.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC
          29799]
 gi|150274691|gb|EDN01755.1| hypothetical protein BACCAP_00420 [Bacteroides capillosus ATCC
          29799]
          Length = 649

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++  I  G      +TDNG G+  +
Sbjct: 52 VYEIVDNSIDEALAGYCDRIDVAILEG--DIISVTDNGRGIPVD 93


>gi|332523189|ref|ZP_08399441.1| DNA gyrase, B subunit [Streptococcus porcinus str. Jelinkova 176]
 gi|332314453|gb|EGJ27438.1| DNA gyrase, B subunit [Streptococcus porcinus str. Jelinkova 176]
          Length = 650

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVFIEED--NSITVVDDGRGIPVD 90


>gi|304314603|ref|YP_003849750.1| sensory transduction histidine kinase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588062|gb|ADL58437.1| predicted sensory transduction histidine kinase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 583

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 24/75 (32%)

Query: 26  AIKELIENSL------DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            I EL+ NS+      D     +   +   GG+    ++DNG G+  E++          
Sbjct: 492 IINELVTNSIKYAFPDDGG--EITVEVHRNGGRYTLIVSDNGVGL-PEDL---------- 538

Query: 79  KISDDFSNIHTFGFR 93
               D  NI T G R
Sbjct: 539 ----DLENISTLGLR 549


>gi|260591900|ref|ZP_05857358.1| putative DNA topoisomerase IV, B subunit [Prevotella veroralis
           F0319]
 gi|260536184|gb|EEX18801.1| putative DNA topoisomerase IV, B subunit [Prevotella veroralis
           F0319]
          Length = 647

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 73/263 (27%), Gaps = 34/263 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 49  LKEVIDNSIDEFKMNAG-DRIEIDIEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 105

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S                +    +  
Sbjct: 106 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVKSFREGKVRALSFEKGNLQGDKTKKT 159

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +                K+     +++ +++R        ++          +
Sbjct: 160 NDESGTYIYFE-------PDNTLFKNYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSR 212

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +  G+    I  + GED            +     + G           A 
Sbjct: 213 HGLKDLLTDNMTGDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 272

Query: 249 QFYVFINGRTVQDKFILSTIRTA 271
           + ++    +    K+    IR  
Sbjct: 273 KEHIAKTIKEFFGKYEYGDIRNG 295


>gi|293390334|ref|ZP_06634668.1| DNA topoisomerase IV, B subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
 gi|290950868|gb|EFE00987.1| DNA topoisomerase IV, B subunit [Aggregatibacter
          actinomycetemcomitans D7S-1]
          Length = 632

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEVLAGFATKIEVILHKD--QSIEVIDNGRGMPVD 77


>gi|261868257|ref|YP_003256179.1| DNA topoisomerase IV subunit B [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261413589|gb|ACX82960.1| DNA topoisomerase IV, B subunit [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 632

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHKD--QSIEVIDNGRGMPVD 77


>gi|167761224|ref|ZP_02433351.1| hypothetical protein CLOSCI_03629 [Clostridium scindens ATCC
          35704]
 gi|167660890|gb|EDS05020.1| hypothetical protein CLOSCI_03629 [Clostridium scindens ATCC
          35704]
          Length = 185

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS+ A +  +E  +    +       I D+G GM  E++        T
Sbjct: 14 ENSIRAGAGYIEIDVIADSQKDTLEIMIRDDGCGMDEEQVRRVTDPFYT 62


>gi|19568163|gb|AAL91672.1|AF316502_1 putative topoisomerase IV subunit B [Aggregatibacter
          actinomycetemcomitans]
          Length = 294

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHKD--QSIEVIDNGRGMPVD 77


>gi|331006335|ref|ZP_08329648.1| putative DNA mismatch repair protein [gamma proteobacterium
          IMCC1989]
 gi|330419856|gb|EGG94209.1| putative DNA mismatch repair protein [gamma proteobacterium
          IMCC1989]
          Length = 658

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 25 IAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           A+ ELI N+ DA++  V+  I     G     + D+G G+  ++      
Sbjct: 24 SALTELIWNAFDADADLVQVSIDRTDFGLQAVHVKDDGLGILHKDSKKLFS 74


>gi|323960319|gb|EGB55959.1| MutL dimerization domain-containing protein [Escherichia coli H489]
          Length = 170

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 16/139 (11%)

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
               + +       + +Q LL P  + +   E + + +    L  LGI  +      + I
Sbjct: 20  RWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQS-DAQHVTI 78

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILAT--MACYGSIRSGRKMQSI 555
           R +P  L ++N+  L+ ++I  +     +      I   +A   M+ +       +    
Sbjct: 79  RAVPLPLRQQNLQILIPELIGYLA--KQSVFEPGNIAQWIARNLMSEHA------QWSMA 130

Query: 556 EMNRLLREMEKNPNSSQCN 574
           +   LL ++E+      C 
Sbjct: 131 QAITLLADVERL-----CP 144


>gi|319893736|ref|YP_004150611.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
 gi|317163432|gb|ADV06975.1| DNA gyrase subunit B [Staphylococcus pseudintermedius HKU10-03]
 gi|323463206|gb|ADX75359.1| DNA gyrase, B subunit [Staphylococcus pseudintermedius ED99]
          Length = 640

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +E VI     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYADNIEVVIEKD--NWIKVTDNGRGIPVD 85


>gi|164510805|emb|CAK18885.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
          Length = 611

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +E VI     ++ ++TDNG G+  +
Sbjct: 17 EIVDNSIDEALAGYADNIEVVIEKD--NWIKVTDNGRGIPVD 56


>gi|164510802|emb|CAK18883.1| topoisomerase II subunit B [Staphylococcus pseudintermedius]
          Length = 611

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +E VI     ++ ++TDNG G+  +
Sbjct: 17 EIVDNSIDEALAGYADNIEVVIEKD--NWIKVTDNGRGIPVD 56


>gi|164510799|emb|CAK18881.1| topoisomerase II subunit B [Staphylococcus intermedius]
          Length = 640

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +E VI     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYADNIEVVIEKD--NWIKVTDNGRGIPVD 85


>gi|327485365|gb|AEA79771.1| Signal transduction histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 684

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEQQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|309702134|emb|CBJ01449.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
          Length = 500

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 73/222 (32%), Gaps = 28/222 (12%)

Query: 31  IENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI-- 87
           I+NS+ A + +V+          +  + DNG GM++ E+ +A++      + +  +    
Sbjct: 33  IDNSISAGARKVDLTFHWRESDCYIVVRDNGCGMSAAELDVAMRLG----VKNPLTKRPG 88

Query: 88  HTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVR 145
           H  G  G  L   S      LT+ S+     T  +  +     S+     +  G     +
Sbjct: 89  HDLGRFGLGLKTASFSQCRRLTVFSKKEGITTILRWDLDILAASTDDGWYLLEGADPGSQ 148

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIA-YPKVSFTFSTIK--SNRYKMNFQSTN 202
           +         +          ++ DV+ R+    Y +  F         +   +  +   
Sbjct: 149 EALANAEPDSHGT-------VVLWDVLDRIVTPGYGEKDFLNLMDGVEQHLAMVFHRFLE 201

Query: 203 GNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
           GN P     + G            K  +  L G+   P  + 
Sbjct: 202 GNAPRLTLTLNGRKI---------KGWDPFLSGHPSKPWHSP 234


>gi|229527878|ref|ZP_04417269.1| hypothetical protein VCG_000952 [Vibrio cholerae 12129(1)]
 gi|229334240|gb|EEN99725.1| hypothetical protein VCG_000952 [Vibrio cholerae 12129(1)]
          Length = 514

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 407 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEQQVIVRVSDNGCGIAPELLTTMFEPF 466

Query: 76  CTSK 79
            TSK
Sbjct: 467 QTSK 470


>gi|254286631|ref|ZP_04961586.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae AM-19226]
 gi|150423215|gb|EDN15161.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae AM-19226]
          Length = 684

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEQQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|254227083|ref|ZP_04920638.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae V51]
 gi|125620388|gb|EAZ48767.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae V51]
          Length = 684

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEQQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|330837805|ref|YP_004412446.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374]
 gi|329749708|gb|AEC03064.1| DNA gyrase subunit B [Spirochaeta coccoides DSM 17374]
          Length = 660

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           IE     + E+++NS+D   A     +   I  G      + DNG G+  +
Sbjct: 56  IEGLHHLVYEIVDNSIDEAMAGYCDYIRITIEPGQI--ITVEDNGRGIPVD 104


>gi|312135112|ref|YP_004002450.1| histidine kinase [Caldicellulosiruptor owensensis OL]
 gi|311775163|gb|ADQ04650.1| histidine kinase [Caldicellulosiruptor owensensis OL]
          Length = 185

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS++A +S V+  IA   K       I DNG G+  + I        T
Sbjct: 11 LVQNSIEAGASLVKIEIAEDLKEDLFTITIEDNGRGIPQDVIDRVTDPFYT 61


>gi|115381166|gb|ABI96232.1| DNA topoisomerase IV subunit B [Mesoplasma syrphidae]
          Length = 552

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 13/55 (23%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  ++ +  V+   G     ++DNG G+        +  H T K
Sbjct: 14 EIVDNSIDEALAGYATEINVVLEKNG--SVTVSDNGRGVP-------IGMHATGK 59


>gi|222150258|ref|YP_002559411.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
 gi|222119380|dbj|BAH16715.1| DNA gyrase subunit B [Macrococcus caseolyticus JCSC5402]
          Length = 642

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 31/92 (33%)

Query: 1  MKI---RKLSEKIINQIAAGEIIERPSIAIK-------------------ELIENSLD-- 36
          M I   + L +   +QI   +++E      K                   E+++NS+D  
Sbjct: 1  MNIVEQQNLDQYGADQI---QVLEGLEAVRKRPGMYIGSTASKGLHHLVWEIVDNSIDEA 57

Query: 37 -AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           A  +  VE  I     ++ ++TDNG G+  +
Sbjct: 58 LAGYADHVEVTIEED--NWIKVTDNGRGIPVD 87


>gi|331015386|gb|EGH95442.1| hypothetical protein PLA106_05457 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 660

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 23 PSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPM 70
          P +A+ EL+ N+ DA +S+V+  +    GG     + D+G GM++++   
Sbjct: 27 PQVALTELVANAWDAGASKVDLFLPSEPGGT--LTVIDDGHGMSAQQFSK 74


>gi|323439694|gb|EGA97412.1| DNA gyrase subunit B [Staphylococcus aureus O11]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|314934956|ref|ZP_07842315.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
 gi|313652886|gb|EFS16649.1| DNA gyrase, B subunit [Staphylococcus caprae C87]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 51 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 90


>gi|302331777|gb|ADL21970.1| DNA topoisomerase (ATP-hydrolyzing) subunit B, GyrB
          [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|294849833|ref|ZP_06790573.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
 gi|294823381|gb|EFG39810.1| hypothetical protein SKAG_01922 [Staphylococcus aureus A9754]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|288562960|pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
          Complexed With Inhibitor
 gi|288562961|pdb|3G75|B Chain B, Crystal Structure Of Staphylococcus Aureus Gyrase B Co-
          Complexed With Inhibitor
 gi|288562962|pdb|3G7B|A Chain A, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
 gi|288562963|pdb|3G7B|B Chain B, Staphylococcus Aureus Gyrase B Co-Complex With Inhibitor
          Length = 184

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 27 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 66


>gi|284023042|ref|ZP_06377440.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 132]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|283469234|emb|CAQ48445.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|257871393|ref|ZP_05651046.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
 gi|257805557|gb|EEV34379.1| DNA gyrase B subunit [Enterococcus gallinarum EG2]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++ +I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATAIQVIIEED--NSITVVDDGRGIPVD 90


>gi|223043343|ref|ZP_03613389.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
 gi|222443132|gb|EEE49231.1| DNA gyrase, B subunit [Staphylococcus capitis SK14]
          Length = 639

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 85


>gi|168002014|ref|XP_001753709.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695116|gb|EDQ81461.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 26  AIKELIENSLDA---ESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           A+ EL++N++D     ++ V   ++   ++      I D+G GMT + +   +    +SK
Sbjct: 55  AVAELVDNAVDEVMNGATFVNVDVSLHPRNRSPMLVIQDDGGGMTPDRMRQCMSLGYSSK 114

Query: 80  ISDDFSNIHTFG 91
              D ++I  +G
Sbjct: 115 SKSD-NSIGQYG 125


>gi|98990338|gb|ABF60237.1| DNA gyrase subunit B [Entomoplasma freundtii]
          Length = 608

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++R+   I   G     + DNG G+            + +   + H
Sbjct: 14 EILDNSIDEAMAGYANRIVVTITKDG--EVVVEDNGRGIPVGVQHDTGRSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|82749782|ref|YP_415523.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
 gi|82655313|emb|CAI79693.1| DNA gyrase subunit B [Staphylococcus aureus RF122]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|221141520|ref|ZP_03566013.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus str. JKD6009]
 gi|257424201|ref|ZP_05600630.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257426878|ref|ZP_05603280.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257429514|ref|ZP_05605901.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257432161|ref|ZP_05608524.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257435122|ref|ZP_05611173.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
 gi|258423233|ref|ZP_05686125.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
 gi|282907052|ref|ZP_06314900.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282910031|ref|ZP_06317839.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282912279|ref|ZP_06320075.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282912919|ref|ZP_06320711.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922547|ref|ZP_06330237.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959489|ref|ZP_06376930.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|293511562|ref|ZP_06670256.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
 gi|293550171|ref|ZP_06672843.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|295429302|ref|ZP_06821924.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297589196|ref|ZP_06947837.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus MN8]
 gi|304379953|ref|ZP_07362682.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus ATCC BAA-39]
 gi|59797755|sp|Q6GKU0|GYRB_STAAR RecName: Full=DNA gyrase subunit B
 gi|257273219|gb|EEV05321.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257276509|gb|EEV07960.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257279995|gb|EEV10582.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257283040|gb|EEV13172.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257285718|gb|EEV15834.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M876]
 gi|257846562|gb|EEV70584.1| DNA gyrase subunit B [Staphylococcus aureus A9635]
 gi|269939531|emb|CBI47889.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TW20]
 gi|282314768|gb|EFB45154.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323019|gb|EFB53338.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323975|gb|EFB54291.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282326097|gb|EFB56402.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282329951|gb|EFB59472.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|283789081|gb|EFC27908.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|290919218|gb|EFD96294.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291465520|gb|EFF08052.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus M809]
 gi|295127061|gb|EFG56705.1| hypothetical protein SIAG_01512 [Staphylococcus aureus subsp.
          aureus EMRSA16]
 gi|297577707|gb|EFH96420.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus MN8]
 gi|302749916|gb|ADL64093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus str. JKD6008]
 gi|304341533|gb|EFM07443.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus ATCC BAA-39]
 gi|312436854|gb|ADQ75925.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus TCH60]
 gi|315195231|gb|EFU25619.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus CGS00]
 gi|329312728|gb|AEB87141.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus T0131]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|57651113|ref|YP_184916.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
 gi|81859679|sp|Q5HJZ1|GYRB_STAAC RecName: Full=DNA gyrase subunit B
 gi|57285299|gb|AAW37393.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus COL]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|49484917|ref|YP_042138.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|49243360|emb|CAG41777.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          MSSA476]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 49 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 88


>gi|49482258|ref|YP_039482.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49240387|emb|CAG39033.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus
          MRSA252]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 49 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 88


>gi|21281734|ref|NP_644820.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|87161454|ref|YP_492727.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|88193828|ref|YP_498613.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|151220216|ref|YP_001331039.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|161508271|ref|YP_001573930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus USA300_TCH1516]
 gi|253733834|ref|ZP_04867999.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451362|ref|ZP_05699393.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
 gi|262049437|ref|ZP_06022309.1| DNA gyrase subunit B [Staphylococcus aureus D30]
 gi|262051893|ref|ZP_06024108.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
 gi|282902636|ref|ZP_06310529.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918073|ref|ZP_06325823.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282920724|ref|ZP_06328443.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
 gi|282921295|ref|ZP_06329013.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767795|ref|ZP_06340710.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
 gi|297209447|ref|ZP_06925845.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus ATCC 51811]
 gi|300911471|ref|ZP_07128920.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus TCH70]
 gi|59797750|sp|Q6GD85|GYRB_STAAS RecName: Full=DNA gyrase subunit B
 gi|59799585|sp|P0A0K7|GYRB_STAAW RecName: Full=DNA gyrase subunit B
 gi|59799586|sp|P0A0K8|GYRB_STAAU RecName: Full=DNA gyrase subunit B
 gi|93204588|sp|Q2FKQ1|GYRB_STAA3 RecName: Full=DNA gyrase subunit B
 gi|296395|emb|CAA50570.1| DNA gyrase [Staphylococcus aureus]
 gi|540541|dbj|BAA01369.1| DNA gyrase B [Staphylococcus aureus]
 gi|21203169|dbj|BAB93870.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus MW2]
 gi|87127428|gb|ABD21942.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|87201386|gb|ABD29196.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|150373016|dbj|BAF66276.1| DNA gyrase B subunit [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|160367080|gb|ABX28051.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus USA300_TCH1516]
 gi|253728137|gb|EES96866.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus TCH130]
 gi|257860892|gb|EEV83709.1| DNA gyrase, B subunit [Staphylococcus aureus A5948]
 gi|259160220|gb|EEW45249.1| DNA gyrase subunit B [Staphylococcus aureus 930918-3]
 gi|259162434|gb|EEW47004.1| DNA gyrase subunit B [Staphylococcus aureus D30]
 gi|282315710|gb|EFB46094.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318358|gb|EFB48718.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282594132|gb|EFB99120.1| DNA gyrase, B subunit [Staphylococcus aureus A9765]
 gi|282597095|gb|EFC02054.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461674|gb|EFC08758.1| DNA gyrase subunit B [Staphylococcus aureus subsp. aureus H19]
 gi|296885908|gb|EFH24843.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus ATCC 51811]
 gi|298693327|gb|ADI96549.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus ED133]
 gi|300887650|gb|EFK82846.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus TCH70]
 gi|315197923|gb|EFU28256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          aureus subsp. aureus CGS01]
 gi|320141422|gb|EFW33265.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320144405|gb|EFW36170.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|323443267|gb|EGB00884.1| DNA gyrase subunit B [Staphylococcus aureus O46]
 gi|329731718|gb|EGG68078.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIPVD 89


>gi|114562357|ref|YP_749870.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
 gi|114333650|gb|ABI71032.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
          Length = 356

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 26/97 (26%)

Query: 8   EKIINQ-IAAGE----------IIER------------PSIAIKELIENSLDAESSRVET 44
           ++IINQ +A+ E          ++E              S A+  L+ NS++A +++++ 
Sbjct: 209 DEIINQVMASCEPIADKKHCQLVVEDTSHSLMLANANALSSAVNNLVMNSIEAGATKIKV 268

Query: 45  VIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +    G     + DNG G+        ++   T+K
Sbjct: 269 SASETPDGL-LLDVIDNGKGLEPSMQQQILEPFFTTK 304


>gi|91781650|ref|YP_556856.1| histidine kinase [Burkholderia xenovorans LB400]
 gi|91685604|gb|ABE28804.1| histidine kinase [Burkholderia xenovorans LB400]
          Length = 666

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDAESS------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA +        +E  +A    SF  ++DNG G+  + +P   +  
Sbjct: 546 RLEQVLINLLGNALDATADINSPRISIEIEVADANLSF-AVSDNGPGIADDVLPRLFEPF 604

Query: 76  CTSK 79
            T+K
Sbjct: 605 FTTK 608


>gi|24379696|ref|NP_721651.1| DNA gyrase subunit B [Streptococcus mutans UA159]
 gi|290580305|ref|YP_003484697.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025]
 gi|24377654|gb|AAN58957.1|AE014963_1 putative DNA gyrase subunit B [Streptococcus mutans UA159]
 gi|254997204|dbj|BAH87805.1| putative DNA gyrase subunit B [Streptococcus mutans NN2025]
          Length = 650

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIQVFIEED--NSITVIDDGRGIPVD 90


>gi|71907496|ref|YP_285083.1| DNA topoisomerase IV subunit B [Dechloromonas aromatica RCB]
 gi|71847117|gb|AAZ46613.1| DNA topoisomerase IV subunit B [Dechloromonas aromatica RCB]
          Length = 662

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 37/214 (17%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
             P+  ++E+I+N+ D   A  + ++   I   G    +++DNG G+      EE    +
Sbjct: 42  TCPTHIVQEVIDNAADEALAGFAKKIAVAIRADGV--IEVSDNGRGIPVEIHPEEGRPAV 99

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG----------EALPSIGAVSHLTLMSRPPQNNT 117
            +   + H   K +    + + + F G           AL SI     L +  +      
Sbjct: 100 ELVFCKLHAGGKFNKK-ESGNAYRFSGGLHGVGVSVTNAL-SI----RLEVEIKRGGGIH 153

Query: 118 G-AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
             A  A    +  S         T   VR     I     +  S +V    +  ++R  A
Sbjct: 154 HIAFGAGFVTEPLSRIGDCGQRNTGTTVR-----IQPDPKYFDSPKVNLGQLEHLLRSKA 208

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERIS 210
           +  P V+        ++    +++   ++   + 
Sbjct: 209 VLMPNVTVELDIEGQDKKVWCYENGMADYLNEMM 242


>gi|58336359|ref|YP_192944.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM]
 gi|227902590|ref|ZP_04020395.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796]
 gi|58253676|gb|AAV41913.1| DNA gyrase subunit B [Lactobacillus acidophilus NCFM]
 gi|227869679|gb|EEJ77100.1| DNA gyrase subunit B [Lactobacillus acidophilus ATCC 4796]
          Length = 654

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++++E  I   G     + D+G G+  +
Sbjct: 58 EVIDNSIDERLAGFATKIEITINEDG--SVTVQDDGRGIPVD 97


>gi|304372931|ref|YP_003856140.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309122|gb|ADM21602.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis HUB-1]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 123/405 (30%), Gaps = 66/405 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE-------EIPMAV-QRHC 76
           E++ N++D   A  +  +   +   G     + D+G G+  E        + +   + H 
Sbjct: 40  EIVSNAVDEALAGFAKNIYVSLEENG--SIVVEDDGRGIPIEKHTSGLSGVELVFTELHA 97

Query: 77  TSKISDDFSNIHTFGFRG------EALPS--IGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
             K SD+    ++ G  G       AL S  I  V           N       I+G +I
Sbjct: 98  GGKFSDEVYK-NSGGLHGVGSSVVNALSSKLIVNV--------YKNNKNYQTKFINGGQI 148

Query: 129 SSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                V  +    GT V+        P +  F ++ +   ++I++ +R       ++  T
Sbjct: 149 EQRTTVVGDSNKKGTRVQF------WPDKKIFAQN-KFSFDMISERLRETCFLISELKIT 201

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
                   ++           + +  +     + N         +  +        +   
Sbjct: 202 L--EDQITFQKEAFFFKNGIKDFVEFINQGKTLLNKQAALINETQEKINVEIA-FQYTDS 258

Query: 246 NANQFYVFING------------------RTVQDKFILSTI---RTAYAETIPLGRYPVV 284
            ++    F+N                   R   D     +I   +T   + + +     +
Sbjct: 259 YSDSIISFVNNIKTKSGGTHELGLKQALVRVFNDFAQQKSIFKNKTHTLDILDIKEGLTL 318

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VL L++ P  +   V   K  +  +    +   I          K    ++ +  K+  +
Sbjct: 319 VLSLKV-PEFLLEFVGQTKDKLGTQIAKSVVEDICYKQVLLWLNKNQQDANKIINKIKDA 377

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           F Q  + K    +   S   ++EK  L            ++   +
Sbjct: 378 FDQRMSTKLSKIESKKSKDASKEKKILSGKLAPAQSKNKAEKELF 422


>gi|149377891|ref|ZP_01895620.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Marinobacter algicola DG893]
 gi|149357833|gb|EDM46326.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Marinobacter algicola DG893]
          Length = 422

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NS++A +++VE  +    +    +++DNG G T E+    ++   T+K
Sbjct: 315 LVNNSVEAGATKVEVAVVSVDEELVVRVSDNGPGFTREQASQLLEAFYTTK 365


>gi|284162384|ref|YP_003401007.1| DNA topoisomerase VI subunit beta [Archaeoglobus profundus DSM
          5631]
 gi|284012381|gb|ADB58334.1| DNA topoisomerase VI, B subunit [Archaeoglobus profundus DSM
          5631]
          Length = 574

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 23 PSIAIKELIENSLDA--ESS---RVETVIAGGGKSF-FQITDNGFGMTSEEIP------M 70
              +KE ++NSLDA  E+     +   I    K +   + DNG G+  +EIP      +
Sbjct: 30 LVTCVKEAVDNSLDACEEAGILPDILVRINRVDKHYRITVEDNGPGIEKDEIPRIFGKLL 89

Query: 71 AVQRHCTSK 79
             R  T K
Sbjct: 90 YGSRFHTLK 98


>gi|152985251|ref|YP_001346379.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150960409|gb|ABR82434.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 434

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 5   KLSEKIINQIAAGEII-ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDN 59
           +L  +         +I  RP      +  LI+N+L  A ++R+E      G +  Q+ DN
Sbjct: 315 QLDGRTAA------VIDTRPHALRRVLVNLIDNALKFAGAARLEVERRADGGTRIQVLDN 368

Query: 60  GFGMTSEEIPMAVQRHC 76
           G G+   E+   ++   
Sbjct: 369 GPGIPPGELDEVLKPFY 385


>gi|297792383|ref|XP_002864076.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309911|gb|EFH40335.1| hypothetical protein ARALYDRAFT_495140 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 804

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD---AESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD     ++ V   +      G     I D+G GM  E++   +    +  SK+
Sbjct: 177 ELLDNALDEVHTGATFVNVDMIENKKDGSKMVVIEDDGGGMNPEKMRHCMSLGYSAKSKL 236

Query: 81  SDDFSNIHTFG 91
           +D    I  +G
Sbjct: 237 AD---TIGQYG 244


>gi|330952329|gb|EGH52589.1| DNA gyrase subunit B [Pseudomonas syringae Cit 7]
          Length = 727

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S + L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEILLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 ESDTTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTPVNQVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|148262067|ref|YP_001236194.1| heat shock protein 90 [Acidiphilium cryptum JF-5]
 gi|146403748|gb|ABQ32275.1| heat shock protein Hsp90 [Acidiphilium cryptum JF-5]
          Length = 606

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 47/244 (19%)

Query: 19  IIERPSI----AIKELIENSLDA------------------ESSRVETVIAGGGKSFFQI 56
           ++          ++EL+ N+ DA                   +  +   I    ++   I
Sbjct: 22  VVHSLYSEREIFLRELVANAADATDRRRFLALSDESLALPEGA-AIRISIDKPART-ITI 79

Query: 57  TDNGFGMTSEEI-------PMAVQRHCTSKIS----DDFSN-IHTF--GFRGEALPSIGA 102
            D+G GMT+E++         +  R  T+ ++    +D  N I  F  GF      S   
Sbjct: 80  ADDGIGMTAEDLASHLGTIARSGTRAFTASLAEAKPEDRPNLIGQFGVGF-----YSAFM 134

Query: 103 VS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP-GTIV--EVRDLFFTIPARLNFL 158
           V+  + + SR    +   + +  G     +        GT +   V+         +   
Sbjct: 135 VADRVEVTSRRAGTDAAHKWSSEGTGGYRIEAATRETPGTDIVLHVKSDADEFLEPVRLE 194

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
              +   + I+  +        + +   + +   R     +    +F   +  +  E + 
Sbjct: 195 TILRKWADHISVPVEIERDGKFQKANEGTALWRRRKADIAEKDYTDFYRHLGHMFDEPWA 254

Query: 219 NNAV 222
               
Sbjct: 255 TIHW 258


>gi|322385201|ref|ZP_08058848.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          cristatus ATCC 51100]
 gi|321270825|gb|EFX53738.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          cristatus ATCC 51100]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFATHIQVFIEKD--NSITVVDDGRGIPVD 89


>gi|319939445|ref|ZP_08013805.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
 gi|319811431|gb|EFW07726.1| DNA gyrase subunit B [Streptococcus anginosus 1_2_62CV]
          Length = 648

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFATHIQVFIEKD--NSITVVDDGRGIPVD 88


>gi|315221787|ref|ZP_07863699.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
 gi|315189020|gb|EFU22723.1| DNA gyrase, B subunit [Streptococcus anginosus F0211]
          Length = 648

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFATHIQVFIEKD--NSITVVDDGRGIPVD 88


>gi|302340767|ref|YP_003805973.1| DNA gyrase subunit beta [Spirochaeta smaragdinae DSM 11293]
 gi|301637952|gb|ADK83379.1| DNA gyrase, B subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 636

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           E     + E+++NS+D   A     +  VI  G     ++ DNG G+      EE    +
Sbjct: 33  EGLHHLVYEIVDNSIDEALAGFCDEILVVIEKGNI--IRVEDNGRGIPTDLHKEEGVSAL 90

Query: 69  PMAVQR-HCTSKISDDFSNIH 88
            + + + H   K + D   + 
Sbjct: 91  EIVMTKLHAGGKFNKDTYKVS 111


>gi|296531195|dbj|BAJ08046.1| DNA gyrase subunit B [Streptococcus intermedius]
          Length = 648

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFATHIQVFIEKD--NSITVVDDGRGIPVD 88


>gi|295101859|emb|CBK99404.1| DNA gyrase subunit B [Faecalibacterium prausnitzii L2-6]
          Length = 664

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I  G     Q+TDNG G+  +
Sbjct: 53 VYEIVDNAIDEALAGYCDHIEVKILKG--DIIQVTDNGRGIPVD 94


>gi|149919730|ref|ZP_01908208.1| hypothetical protein PPSIR1_03643 [Plesiocystis pacifica SIR-1]
 gi|149819501|gb|EDM78931.1| hypothetical protein PPSIR1_03643 [Plesiocystis pacifica SIR-1]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 30/139 (21%)

Query: 28  KELIENSLDAESSRVETVIA----------------GGGKSFFQITDNGFGMTSEEIPMA 71
           +ELI+N+LDA S+ VE                      G     + D G GM  + I   
Sbjct: 28  RELIQNALDAGSAEVEIDFEFQPAGEASEAGDASAAQAGAMVITVQDFGEGMDRQIIDSK 87

Query: 72  VQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTL-----MSRPPQNNTGAQIAISGE 126
           + R  +S    D + I  FG        IG VS   +          +     ++    +
Sbjct: 88  LTRLFSSAKDGDMTKIGKFG--------IGFVSVFAIEPDAVCVDTARAGEAWRVLFDVD 139

Query: 127 K-ISSVRPVAMNPGTIVEV 144
           +    +R      GT V +
Sbjct: 140 RNFKRLRLDQAMEGTTVRI 158


>gi|323144110|ref|ZP_08078750.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066]
 gi|322416125|gb|EFY06819.1| DNA topoisomerase IV, B subunit [Succinatimonas hippei YIT 12066]
          Length = 638

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 15/68 (22%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQR-H 75
           E+I+NS+D   A  ++++E  +   G    ++ DNG GM  +         I +   R H
Sbjct: 42  EVIDNSVDEALAGFATKIEVNLYKDG--SLEVIDNGRGMPVDMHPTEKIPAIELIFSRLH 99

Query: 76  CTSKISDD 83
              K S+D
Sbjct: 100 AGGKFSND 107


>gi|225575309|ref|ZP_03783919.1| hypothetical protein RUMHYD_03398 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037505|gb|EEG47751.1| hypothetical protein RUMHYD_03398 [Blautia hydrogenotrophica DSM
           10507]
          Length = 321

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 30  LIENSL---DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++   D+   +++  +          + D+G G+  E+     QR   SK
Sbjct: 204 LVDNAIKYTDSG-GKIQIEVIPYTIFCRINVIDDGRGICEEDQAKIFQRFYRSK 256


>gi|73670272|ref|YP_306287.1| DNA topoisomerase VI subunit B [Methanosarcina barkeri str. Fusaro]
 gi|121729410|sp|Q468I5|TOP6B_METBF RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|72397434|gb|AAZ71707.1| DNA topoisomerase subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 621

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 49/188 (26%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAV------Q 73
           +KE ++N+LDA  E+     +   I   G+ +  +   DNG G+  E+IP          
Sbjct: 42  VKEAVDNALDACEEAGILPDILVQIERTGQDYVTVIIEDNGPGIIKEQIPKVFAKLLYGS 101

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISG 125
           R    K         + G +G  +    AV  + +T      ++S+    N      +  
Sbjct: 102 RFHALK--------QSRGQQGIGIS--AAVLYAQMTAGKQTKILSKTGSGNPAHYYELMI 151

Query: 126 EK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                        +R      GT +E+      +  R             I++ ++  AI
Sbjct: 152 NTSTNEPDILKDEIRDWFRPHGTQIELEMKAAYVKGRRQS----------ISEYLKATAI 201

Query: 178 AYPKVSFT 185
             P    T
Sbjct: 202 VNPHARIT 209


>gi|262403334|ref|ZP_06079894.1| signal transduction histidine kinase [Vibrio sp. RC586]
 gi|262350833|gb|EEY99966.1| signal transduction histidine kinase [Vibrio sp. RC586]
          Length = 684

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEQQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|262166787|ref|ZP_06034524.1| DNA gyrase subunit B [Vibrio mimicus VM223]
 gi|262026503|gb|EEY45171.1| DNA gyrase subunit B [Vibrio mimicus VM223]
          Length = 805

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 81/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++        +Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIHRGGKIHSQTYHHGVPQAPLSVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 ETERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|120554917|ref|YP_959268.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324766|gb|ABM19081.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 411

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NSL+A ++ V  V++   G+   +++DNG G    E    ++   T+K
Sbjct: 316 LVNNSLEAGAADVSIVVSATSGRLEIRVSDNGPGFEPGEAGRIMEAFYTTK 366


>gi|302337572|ref|YP_003802778.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634757|gb|ADK80184.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 531

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRH 75
           L++N+LD  SSRV+  +   G+     ++ D+G G+   + P    R 
Sbjct: 431 LLDNALDFASSRVDLSLFPLGERNVGIRVEDDGPGIDPADAPHLFSRF 478


>gi|170079619|ref|YP_001736252.1| hypothetical protein SYNPCC7002_F0066 [Synechococcus sp. PCC 7002]
 gi|169887288|gb|ACB00997.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein protein [Synechococcus sp. PCC 7002]
          Length = 519

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 21/87 (24%)

Query: 23  PSIAIKELIENSLDAESSRV------ETVIAGG---GKSFFQITDNGFGMT-SEEIPMAV 72
           P   +KEL++N+LD     +      +  +  G   G+ + +  DNG G+    ++ +  
Sbjct: 25  PEHLVKELVQNALD----SIAEGEPGQINLNYGYHQGQFYIECRDNGSGIECLSDLRVVY 80

Query: 73  QRHCTSKISDDFSNIHTFGFRG--EAL 97
             H T    D       FG RG  EAL
Sbjct: 81  LTHKT----DSHLKRGRFG-RGFKEAL 102


>gi|313905800|ref|ZP_07839159.1| histidine kinase [Eubacterium cellulosolvens 6]
 gi|313469406|gb|EFR64749.1| histidine kinase [Eubacterium cellulosolvens 6]
          Length = 741

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           E+I+    A+ EL++N+ DA+S  V   I          + D+G GM+S +I 
Sbjct: 53  ELIQDQCAALVELVKNAYDADSKDVNIAIIKNNDDITISVIDHGHGMSSRDIA 105


>gi|262277071|ref|ZP_06054864.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114]
 gi|262224174|gb|EEY74633.1| DNA topoisomerase IV, B subunit [alpha proteobacterium HIMB114]
          Length = 646

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 29/195 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM---------AVQRH 75
           E+++NS+D   A  +  +   +    K+   I+D+G G+  ++ P              H
Sbjct: 43  EILDNSIDEAVAGYAKEIVIKLVN--KNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-----HLTLMSRPPQNNTGAQIAISGEKISS 130
              K +D      + G  G  L  + A+S      +T  S+    +          K+ +
Sbjct: 101 SGGKFNDSVYK-SSAGLHGVGLSVVNALSSKLNIQVTKSSKIYSQD--YSKGKILNKLKT 157

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                +  GT +         P    F K    +   I ++ +  A     +  ++   K
Sbjct: 158 KGKNKIKNGTQITFS------PDPEIFGKDVNFKPEKIYELAKNKAYLQKGIKISWECNK 211

Query: 191 SNRYKMNFQSTNGNF 205
               + +   +    
Sbjct: 212 DLLNRKSSVPSKETL 226


>gi|254482729|ref|ZP_05095967.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
          HTCC2148]
 gi|214037088|gb|EEB77757.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
          HTCC2148]
          Length = 628

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + +++ ++  GG     ++DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNSVDEALAGHADQIDVILHKGG--SVSVSDNGRGMPVD 76


>gi|260429557|ref|ZP_05783534.1| PAS/PAC sensor signal transduction histidine kinase [Citreicella
           sp. SE45]
 gi|260420180|gb|EEX13433.1| PAS/PAC sensor signal transduction histidine kinase [Citreicella
           sp. SE45]
          Length = 444

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA    ++ +V   +A   G +   ++DNG G+   +         T+K
Sbjct: 342 LVQNAIDAVDGQKAPQVTIALARHDGMARLTVSDNGPGIPEAQRAAVFDPFFTTK 396


>gi|154151277|ref|YP_001404895.1| DNA topoisomerase VI subunit B [Candidatus Methanoregula boonei
           6A8]
 gi|153999829|gb|ABS56252.1| DNA topoisomerase VI, B subunit [Methanoregula boonei 6A8]
          Length = 600

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 45/190 (23%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGG--KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           IKE ++N+LDA  E+     +   I   G       + DNG G+   ++P         K
Sbjct: 40  IKEAVDNALDACEEAQVLPDIYISIKKTGPEIFRIIVEDNGPGIVPAQVPFVFG-----K 94

Query: 80  I--SDDFSNIH-TFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISGEKI 128
           +     F  I  T G +G  +    AV  + LT      ++SR        +  I  +  
Sbjct: 95  LLYGSRFHQIRQTRGQQGIGIS--AAVLYAQLTSGLPTVVISRTGVKEQAHKFGIQIKIE 152

Query: 129 --------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                             GT V++              KS       + + +R  +I  P
Sbjct: 153 TNEPDVISEQPFEWDRIHGTRVQIE------------FKSTMSAKKKLLEYLRYTSIVNP 200

Query: 181 KVSFTFSTIK 190
              F      
Sbjct: 201 HARFRVELDD 210


>gi|330723480|gb|AEC45850.1| Topoisomerase IV subunit B [Mycoplasma hyorhinis MCLD]
          Length = 649

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 123/405 (30%), Gaps = 66/405 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE-------EIPMAV-QRHC 76
           E++ N++D   A  +  +   +   G     + D+G G+  E        + +   + H 
Sbjct: 40  EIVSNAVDEALAGFAKNIYVSLEENG--SIVVEDDGRGIPIEKHTSGLSGVELVFTELHA 97

Query: 77  TSKISDDFSNIHTFGFRG------EALPS--IGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
             K SD+    ++ G  G       AL S  I  V           N       I+G +I
Sbjct: 98  GGKFSDEVYK-NSGGLHGVGSSVVNALSSKLIVNV--------YKNNKNYQTKFINGGQI 148

Query: 129 SSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                V  +    GT V+        P +  F ++ +   ++I++ +R       ++  T
Sbjct: 149 EQRTTVVGDSNKKGTRVQF------WPDKKIFAQN-KFSFDMISERLRETCFLISELKIT 201

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
                   ++           + +  +     + N         +  +        +   
Sbjct: 202 L--EDQITFQKEAFFFKNGIKDFVEFINQGKTLLNKQAALINETQEKINVEIA-FQYTDS 258

Query: 246 NANQFYVFING------------------RTVQDKFILSTI---RTAYAETIPLGRYPVV 284
            ++    F+N                   R   D     +I   +T   + + +     +
Sbjct: 259 YSDSIISFVNNIKTKSGGTHELGLKQALVRVFNDFAQQKSIFKNKTHTLDILDIKEGLTL 318

Query: 285 VLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
           VL L++ P  +   V   K  +  +    +   I          K    ++ +  K+  +
Sbjct: 319 VLSLKV-PEFLLEFVGQTKDKLGTQIAKSVVEDICYKQVLLWLNKNQQEANKIINKIKDA 377

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTY 389
           F Q  + K    +   S   ++EK  L            ++   +
Sbjct: 378 FDQRMSTKLSKIESKKSKDASKEKKILSGKLAPAQSKNKAEKELF 422


>gi|90407086|ref|ZP_01215275.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3]
 gi|90311808|gb|EAS39904.1| DNA topoisomerase IV subunit B [Psychromonas sp. CNPT3]
          Length = 629

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 29/209 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  ++ ++ ++        ++TD+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHATSIQVILHED--QSIEVTDDGRGMPVDIHPEEKISGVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISG 125
           +   + H   K S     I + G  G  +  + A+S    + +       +   +     
Sbjct: 89  LIFCKLHAGGKFSGKNYAI-SGGLHGVGISVVNALSARVDVNIRRNAKVYHIAFEHGEKV 147

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS- 183
           E++  +      N GT V  R      P    +  S +   + +  +++  A+  P +S 
Sbjct: 148 EELKEIDTCGKRNTGTSVHFR------PDPR-YFDSAKFSVSRLLHLLKAKAVLCPGLSI 200

Query: 184 -FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            F     K+N +       N    E + +
Sbjct: 201 KFKDRVNKNNYHWCYKDGLNDYLLEAVHE 229


>gi|77361502|ref|YP_341077.1| DNA topoisomerase IV subunit B [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876413|emb|CAI87635.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 629

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 81/218 (37%), Gaps = 32/218 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  ++R++ ++     +  +++D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEAMAGHATRIDVILHED--NSLEVSDDGRGMPIDIHPEEGIPGVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           +   + H   K S+      + G  G  +  + A+S  + +  R        ++A    +
Sbjct: 90  LIFTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDAQQ--YRMAFENGE 146

Query: 128 ISSVRPVAM-----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
                 V       N GT V            +++  S       +  +++  A+  P +
Sbjct: 147 KVEDLSVIGVVGKRNTGTTVRFW-------PDVSYFDSPNYSITKLNHLLKAKAVLCPGL 199

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
              F   K  +    +    G     I  + G + + +
Sbjct: 200 RIKF-VNKQTKETQEWFYETGLKDYLIEAIKGYETLPD 236


>gi|296268958|ref|YP_003651590.1| histidine kinase [Thermobispora bispora DSM 43833]
 gi|296091745|gb|ADG87697.1| histidine kinase [Thermobispora bispora DSM 43833]
          Length = 950

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 17  GEIIERPSIAIKELIENSL-----DAESSRVET---VIAGGGKSFFQITDNGFGMTSEEI 68
           G+ +      + ELIEN+L     D   S+V      I GGG     ++D G GMT EEI
Sbjct: 515 GQAVNDVVHLLAELIENALSFSPRD---SKVTVSSSRIDGGGL-LISVSDTGIGMTPEEI 570

Query: 69  PMAVQRHC 76
             A  R  
Sbjct: 571 EQANHRLA 578


>gi|269303150|gb|ACZ33250.1| DNA gyrase, B subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 805

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          I      + E+++NS+D   A   SR++  I   GG     I DNG G+  E
Sbjct: 35 ITGLHHLVYEVVDNSIDEAMAGYCSRIDVRILEDGG---IVIVDNGRGIPIE 83


>gi|253579801|ref|ZP_04857069.1| sensor protein ResE [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848800|gb|EES76762.1| sensor protein ResE [Ruminococcus sp. 5_1_39BFAA]
          Length = 345

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 31  IENSLD---AESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           ++N+ D   + ++ +         G     ITDNG G+  E+I    +R   S+ S D  
Sbjct: 246 VKNAFDHTESGAT-IHVAWKELPSGVQ-IVITDNGCGIHPEDIHHIFKRFYRSRFSKDKQ 303

Query: 86  NIH 88
            I 
Sbjct: 304 GIG 306


>gi|15618195|ref|NP_224480.1| DNA gyrase subunit B [Chlamydophila pneumoniae CWL029]
 gi|15835810|ref|NP_300334.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|16752763|ref|NP_445031.1| DNA gyrase subunit B [Chlamydophila pneumoniae AR39]
 gi|33241617|ref|NP_876558.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
 gi|6647530|sp|Q9Z8R3|GYRB_CHLPN RecName: Full=DNA gyrase subunit B
 gi|4376548|gb|AAD18424.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae CWL029]
 gi|7189402|gb|AAF38314.1| DNA gyrase, subunit B [Chlamydophila pneumoniae AR39]
 gi|8978649|dbj|BAA98485.1| DNA gyrase subunit B [Chlamydophila pneumoniae J138]
 gi|28415637|dbj|BAC57414.1| DNA Gyrase Subunit B [Chlamydophila pneumoniae]
 gi|33236126|gb|AAP98215.1| DNA gyrase subunit B [Chlamydophila pneumoniae TW-183]
          Length = 805

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          I      + E+++NS+D   A   SR++  I   GG     I DNG G+  E
Sbjct: 35 ITGLHHLVYEVVDNSIDEAMAGYCSRIDVRILEDGG---IVIVDNGRGIPIE 83


>gi|312901968|ref|ZP_07761230.1| hypothetical protein HMPREF9510_02743 [Enterococcus faecalis
          TX0470]
 gi|311290904|gb|EFQ69460.1| hypothetical protein HMPREF9510_02743 [Enterococcus faecalis
          TX0470]
          Length = 645

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 6  LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
          ++ ++I  I   EIIE   IAI E I+NS DA S      ++   +    ITDNG GMT 
Sbjct: 17 INPRLIPGILGSEIIESYGIAIAEQIKNSADAGSKSARVDLSKINEDIIVITDNGEGMTK 76

Query: 66 E 66
          +
Sbjct: 77 Q 77


>gi|311109657|ref|YP_003982510.1| His Kinase A phosphoacceptor domain-containing protein 14
           [Achromobacter xylosoxidans A8]
 gi|310764346|gb|ADP19795.1| His Kinase A phosphoacceptor domain protein 14 [Achromobacter
           xylosoxidans A8]
          Length = 495

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 3   IR-KLSEKIINQIAAG-EIIERPSIAI------KE----LIENSL--DAESSRVETVIA- 47
           IR  L      Q+  G E   RP   +      +E    L++N++   + +  V   +  
Sbjct: 344 IRGLLPTARARQLDIGLEADIRPVTVLGAEWLLREAVSNLVDNAIRYTSSAGEVTVKVQV 403

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
             G++   + DNG GM++E+I  A  R 
Sbjct: 404 EAGQARLVVEDNGPGMSAEDIARACIRF 431


>gi|304373561|ref|YP_003858306.1| gp39plus60 DNA topoisomerase II large subunit [Enterobacteria phage
           RB16]
 gi|299829517|gb|ADJ55310.1| gp39plus60 DNA topoisomerase II large subunit [Enterobacteria phage
           RB16]
          Length = 631

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 18  EIIERPSIAIKELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E +E     I E+++NS+D         ++++E  I         I+DNG G+  +++ 
Sbjct: 64  EYVEGLVKIINEILDNSIDEAIRTDFKFANKIEVKIDHN---LVTISDNGRGIPQDDVR 119


>gi|70725006|ref|YP_251920.1| DNA gyrase subunit B [Staphylococcus haemolyticus JCSC1435]
 gi|68445730|dbj|BAE03314.1| DNA gyrase (topoisomerase II) subunit B [Staphylococcus
          haemolyticus JCSC1435]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E +I     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVIIEKD--NWIKVTDNGRGIPVD 89


>gi|293191018|ref|ZP_06609062.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
 gi|292820705|gb|EFF79671.1| DNA gyrase, B subunit [Actinomyces odontolyticus F0309]
          Length = 674

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +  +E  I   GG    ++ DNG G+  +E P
Sbjct: 48 VYEVVDNSVDEALAGYADHIEVTIQEDGG---IKVVDNGRGIPVDEHP 92


>gi|154508246|ref|ZP_02043888.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC
          17982]
 gi|153797880|gb|EDN80300.1| hypothetical protein ACTODO_00740 [Actinomyces odontolyticus ATCC
          17982]
          Length = 674

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +  +E  I   GG    ++ DNG G+  +E P
Sbjct: 48 VYEVVDNSVDEALAGYADHIEVTIQEDGG---IKVVDNGRGIPVDEHP 92


>gi|33469292|gb|AAQ19683.1| DNA gyrase subunit B [Staphylococcus haemolyticus]
          Length = 644

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++E +I     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYANQIEVIIEKD--NWIKVTDNGRGIPVD 89


>gi|222056472|ref|YP_002538834.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565761|gb|ACM21733.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 427

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 15  AAGEII-----ERPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMT 64
           A GE+      ER    +  L++N++DA     S  +   + G  GK   +I D+G G+ 
Sbjct: 312 AEGEVTVTADQERIRQVLVNLLKNAVDAVSEGGS--ITIEMEGKDGKVLIRILDSGPGIP 369

Query: 65  SEEIPMAVQRHCTSK 79
            + +        T+K
Sbjct: 370 EKNLEKIFDIFYTTK 384


>gi|21241857|ref|NP_641439.1| heat shock protein G-like protein [Xanthomonas axonopodis pv.
          citri str. 306]
 gi|21107239|gb|AAM35975.1| heat shock protein G homolog [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 203

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 23 PSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEI 68
          P+  + E++ N+ DA++  V   +    GK    +TD+GFGMT+++I
Sbjct: 48 PA-VLTEMVANAWDADAKEVRIDVDLKAGK--IVVTDDGFGMTAKDI 91


>gi|85706635|ref|ZP_01037727.1| hypothetical protein ROS217_07789 [Roseovarius sp. 217]
 gi|85668693|gb|EAQ23562.1| hypothetical protein ROS217_07789 [Roseovarius sp. 217]
          Length = 500

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 30 LIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR 74
          L++NS+ A S+ +   +   G +S+ +I D+G GM  E +  A  R
Sbjct: 31 LVDNSITANSTAIAIHLEWAGPESWVKIVDDGEGMDDEALE-AGMR 75


>gi|312885199|ref|ZP_07744878.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367139|gb|EFP94712.1| DNA topoisomerase IV subunit B [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 626

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 76/209 (36%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
           ERP+   +E+I+NS+D   A  + ++  ++        ++ D+G GM  +          
Sbjct: 30  ERPNHLAQEVIDNSVDEALAGHAKKIRVILHED--QSLEVVDDGRGMPVDIHPEKGISGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+D     + G  G  +  + A+S  + +  +          +   
Sbjct: 88  EL-IMTKLHAGGKFSNDNYK-FSGGLHGVGISVVNALSRRVEVTVKRDGQVHEIAFEGGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           +  ++S        N GT V              +  S +  +  + + +R  A+  P +
Sbjct: 146 AVTELSVTGTCGMRNTGTSVHFW-------PDAKYFDSPKFSSLRLVNNLRAKAVLCPGL 198

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
              FS       + +         + +++
Sbjct: 199 EIIFS--DKVNNEEHKWFYEDGLKDYLAE 225


>gi|29649150|gb|AAO86864.1| DNA gyrase subunit B [Mesoplasma syrphidae]
          Length = 550

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAVQR-H 75
          E+++NS+D   A  ++ +  VI   G     + DNG G+     E+     + +   + H
Sbjct: 17 EILDNSIDEAMAGEANTISVVITKEG--EVIVEDNGRGIPVGIQEDSGKSALELVFTQLH 74

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 75 AGGKFDSDSYKIS 87


>gi|152973859|ref|YP_001373376.1| DNA gyrase subunit B [Bacillus cereus subsp. cytotoxis NVH
          391-98]
 gi|152022611|gb|ABS20381.1| DNA gyrase, B subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 640

 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +  VI        ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVVIEED--DSIRVTDNGRGIP 84


>gi|148550627|ref|YP_001260066.1| hypothetical protein Swit_5188 [Sphingomonas wittichii RW1]
 gi|148503046|gb|ABQ71299.1| hypothetical protein Swit_5188 [Sphingomonas wittichii RW1]
          Length = 553

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 21/137 (15%)

Query: 29  ELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF--- 84
           ELI+NS  A ++ ++  +A   G+S+  I D+G G+    + +A+ R   S   D+    
Sbjct: 33  ELIQNSRRAGATVIDLDVAEADGQSWLVIADDGAGIADPAVILALGR---SGWDDNIARR 89

Query: 85  SNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-----IAISGEKISSVRPVAMNPG 139
            +    G     + S+    H+ + S P     G                +V P     G
Sbjct: 90  EDPAGMG-----VFSLAG-RHVEIRSCPRGPGEGWAITIGPDHWESGAPIAVAPCDHGFG 143

Query: 140 TIVEV---RDLFFTIPA 153
           T + +    D    + A
Sbjct: 144 TAIRLLLDDDCTRNLEA 160


>gi|83942489|ref|ZP_00954950.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Sulfitobacter sp. EE-36]
 gi|83846582|gb|EAP84458.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Sulfitobacter sp. EE-36]
          Length = 586

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 23/108 (21%)

Query: 11  INQIAAGEIIE------RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITD 58
           IN+I   E ++      R    +  L+ N+LDA  ++      VE +++ G  +   + D
Sbjct: 457 INRILPAEPVQVMGDRMRIEQVLVNLLRNALDA--TKSERNPTVEIILSAGETATLTVRD 514

Query: 59  NGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
           NG G+  E++    +   T+K   D   +      G A+ S G VS L
Sbjct: 515 NGPGI--EDLDSLFEPFYTTKQPGDGVGL------GLAISS-GIVSDL 553


>gi|330981497|gb|EGH79600.1| sensor histidine kinase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 585

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA     S  +E  I          + DNG G+ +E +P       T+K
Sbjct: 485 LLRNALDAMRECRSRHLEVRIDAVDNYWRLSVRDNGSGIAAENLPSIFDPFFTTK 539


>gi|330898456|gb|EGH29875.1| sensor histidine kinase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 315

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA     S  +E  I          + DNG G+ +E +P       T+K
Sbjct: 215 LLRNALDAMRECRSRHLEVRIDAVDNYWRLSVRDNGSGIAAENLPSIFDPFFTTK 269


>gi|291438512|ref|ZP_06577902.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672]
 gi|291341407|gb|EFE68363.1| DNA topoisomerase chain B [Streptomyces ghanaensis ATCC 14672]
          Length = 679

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 60 VQEVVDNSVDEALAGYADTIDVTILDDGG---IRVVDNGRGIP 99


>gi|239930170|ref|ZP_04687123.1| DNA gyrase subunit B [Streptomyces ghanaensis ATCC 14672]
          Length = 687

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 68  VQEVVDNSVDEALAGYADTIDVTILDDGG---IRVVDNGRGIP 107


>gi|157364483|ref|YP_001471250.1| histidine kinase [Thermotoga lettingae TMO]
 gi|157315087|gb|ABV34186.1| histidine kinase [Thermotoga lettingae TMO]
          Length = 179

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 32 ENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
          +NS  AE+ ++   I      F  Q+ D+G GM  E++        T
Sbjct: 15 QNSFKAEAKKITLTIEENKNWFCFQVEDDGCGMDDEQLKTVFDPFYT 61


>gi|115381156|gb|ABI96227.1| DNA gyrase subunit B [Mesoplasma seiffertii]
          Length = 553

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAVQR-H 75
          E+++NS+D   A  ++ +   I   G     + DNG G+     E+     + +   + H
Sbjct: 14 EILDNSIDEAMAGEANTISVTITKEG--EVIVEDNGRGIPVGIQEDSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|34304599|gb|AAQ63405.1| DNA gyrase subunit B [Mesoplasma seiffertii]
          Length = 531

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAVQR-H 75
          E+++NS+D   A  ++ +   I   G     + DNG G+     E+     + +   + H
Sbjct: 9  EILDNSIDEAMAGEANTISVTITKEG--EVIVEDNGRGIPVGIQEDSGKSALELVFTQLH 66

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 67 AGGKFDSDSYKIS 79


>gi|327398178|ref|YP_004339047.1| DNA gyrase subunit B [Hippea maritima DSM 10411]
 gi|327180807|gb|AEA32988.1| DNA gyrase, B subunit [Hippea maritima DSM 10411]
          Length = 787

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          G  +E     + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 28 GTSVEGLHHLVYEVVDNSIDEAMAGYCDTINVYINED--NSITVEDNGRGIPVD 79


>gi|330937710|gb|EGH41608.1| sensor histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 585

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA     S  +E  I          + DNG G+ +E +P    +  T+K
Sbjct: 485 LLRNALDAMRDCRSRHLEVRIDAVDNYWRLSVRDNGSGIAAENLPSIFDQFFTTK 539


>gi|330507582|ref|YP_004384010.1| DNA topoisomerase VI subunit B [Methanosaeta concilii GP-6]
 gi|328928390|gb|AEB68192.1| DNA topoisomerase VI, B subunit [Methanosaeta concilii GP-6]
          Length = 611

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 12/65 (18%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV------ 72
             +KE ++NSLDA  ++     +   I   G+ F   + DNG G+  EEIP         
Sbjct: 38  TCVKEAVDNSLDACEDAGILPDIFVQIKKSGEYFQVIVEDNGPGIVPEEIPRVFAKLLYG 97

Query: 73  QRHCT 77
            R  T
Sbjct: 98  SRFHT 102


>gi|312958106|ref|ZP_07772629.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens
           WH6]
 gi|311287537|gb|EFQ66095.1| DNA topoisomerase II:ATP-binding region [Pseudomonas fluorescens
           WH6]
          Length = 805

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++           +  K+     +++   IR ++     V       +S + +
Sbjct: 161 DSETTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       E  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|126737571|ref|ZP_01753301.1| sensory histidine protein kinase [Roseobacter sp. SK209-2-6]
 gi|126720964|gb|EBA17668.1| sensory histidine protein kinase [Roseobacter sp. SK209-2-6]
          Length = 470

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+EN++   DA +  +   + G       I+DNG G+  ++    ++ 
Sbjct: 377 LVENAIRHCDA-ADSISIRVEGP---LLSISDNGPGIPPDQREKVLEP 420


>gi|330814224|ref|YP_004358463.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487319|gb|AEA81724.1| topoisomerase IV subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 649

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 24/179 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM---------AVQRH 75
           E+I+N +D   A  +S +  ++   G     + DNG G+  ++ P              H
Sbjct: 44  EIIDNCMDEVVAGEASEITVILNKNG--SLTVMDNGRGIPIDKHPKKNKSALEVVMTTLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  +D     + G  G  L  + A+S    + +  +   +           K++   
Sbjct: 102 SGGKFKEDGVYTTSAGLHGVGLSVVNALSSKMKVEVFKKKKIHFQEYSRGKPLNKLAQKG 161

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
                 GT V        +P    F K        I +  R  A  +  V   +   KS
Sbjct: 162 TYPSPHGTRVTF------LPDDQIFGKDLIFLPIKIYETCRNKAFLFKGVKIHWECDKS 214


>gi|296100816|ref|YP_003610962.1| hypothetical protein ECL_00447 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295055275|gb|ADF60013.1| hypothetical protein ECL_00447 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 808

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        A+ ELI NS+DA +  V   I   G S     D+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SIGKAVIELIMNSVDAGAGAVIIDITPEGFSC---RDDGRG 59

Query: 63 MTS-EEIPMAVQRHCT 77
            S +++     R  T
Sbjct: 60 FASYDDVKRYFGRFGT 75


>gi|238918286|ref|YP_002931800.1| hypothetical protein NT01EI_0323 [Edwardsiella ictaluri 93-146]
 gi|238867854|gb|ACR67565.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 383

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/326 (5%), Positives = 61/326 (18%), Gaps = 5/326 (1%)

Query: 110 SRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           S                         +        +             + +  +     
Sbjct: 9   SGTKNVRCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQRWHCQ 68

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEK 227
             ++     + +     +     +  +          + +       + ++ NA   + +
Sbjct: 69  QRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQ 128

Query: 228 SNEITLQGYTGIPTF-NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVL 286
                 Q +       N    +      N +  + +  L   +  + +            
Sbjct: 129 QWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQ 188

Query: 287 LLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFH 346
              +   Q        K+   +     ++N      Q+ +            K       
Sbjct: 189 QW-LKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHC 247

Query: 347 QDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQL 406
           Q              L N Q     Q+   +            ++     +  +      
Sbjct: 248 QQWLKNAQCWHCQQWLKNAQ-CWRCQQRLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWR 306

Query: 407 GIACAQIHQNYIISQTTDGLVIVDQH 432
                +  Q +   Q           
Sbjct: 307 CQQRLKNAQCWHCQQRLKNAQCWHCQ 332



 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/218 (4%), Positives = 43/218 (19%), Gaps = 4/218 (1%)

Query: 113 PQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                                  +        +             + +  +       +
Sbjct: 120 KNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQRL 179

Query: 173 RRMAIAYPKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKSNE 230
           +     + +     +     +  +          + +       +  + NA   + +   
Sbjct: 180 KNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWL 239

Query: 231 ITLQGYTGIPTF-NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
              Q +       N    +      N +  + +  L   +  + +               
Sbjct: 240 KNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQW- 298

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
           +   Q        K+   +     ++N      Q+ + 
Sbjct: 299 LKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLK 336



 Score = 39.3 bits (90), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/190 (4%), Positives = 37/190 (19%), Gaps = 11/190 (5%)

Query: 111 RPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITD 170
           R                        +        +             + +  +      
Sbjct: 178 RLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQ 237

Query: 171 VIRRMAIAYPKVSFTFSTIKSNRYKMN--FQSTNGNFPERISQVIGEDFINNAVELNEKS 228
            ++     + +     +     +  +            +       + ++ NA   + + 
Sbjct: 238 WLKNAQCWHCQQWLKNAQCWHCQQWLKNAQCWRCQQRLKNAQCWHCQQWLKNAQCWHCQQ 297

Query: 229 NEITLQGYTGIPTF-NRGNANQFYVFINGRTVQDKFILSTIRTAYAE--------TIPLG 279
                Q +       N    +      N +    +  L   +  + +         + + 
Sbjct: 298 WLKNAQCWRCQQRLKNAQCWHCQQRLKNAQCWHCQQWLKNAQCWHCQQRLKNVLCLLAMD 357

Query: 280 RYPVVVLLLE 289
           +     L + 
Sbjct: 358 KSKFHHLAIW 367


>gi|119503660|ref|ZP_01625743.1| PAS/PAC sensor signal transduction histidine kinase [marine gamma
           proteobacterium HTCC2080]
 gi|119460722|gb|EAW41814.1| PAS/PAC sensor signal transduction histidine kinase [marine gamma
           proteobacterium HTCC2080]
          Length = 391

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 30  LIENSLDAESS--RVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LI N+LDA ++   +     I     +  QI D G G+ +E I        T
Sbjct: 287 LITNALDASATQPNITISSRIRNNRLAVIQIADRGCGIPAEAIDRIFDPFFT 338


>gi|307293240|ref|ZP_07573086.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
 gi|306881306|gb|EFN12522.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
          Length = 688

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 14  IAAG---EIIERPSIA---IKELIENSLDAES--SRVETVIAGGGKS-FFQITDNGFGMT 64
           I AG   +++  P+     +  L++N++DA +    VE  ++  G+     + D G GMT
Sbjct: 563 IVAGDAPQVLADPARVEQIVIHLLQNAIDASAPDDVVELRLSDDGRDALLDVIDQGRGMT 622

Query: 65  SEEIPM-AVQRHCTSK 79
           +E I     +   +SK
Sbjct: 623 AEFIRRELFKPFSSSK 638


>gi|302344381|ref|YP_003808910.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301640994|gb|ADK86316.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 568

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 30  LIENSLDA-----ESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA      +S     +   + G G++   ++DNG G++ E +        T+K
Sbjct: 466 LINNAMDAAIARHGASGGRVELRVGVDGEGQARLSVSDNGVGISEENLRRIFTPFFTTK 524


>gi|332188286|ref|ZP_08390013.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
          protein [Sphingomonas sp. S17]
 gi|332011682|gb|EGI53760.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
          protein [Sphingomonas sp. S17]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGK---SFFQITDNGFGMT 64
          A+ EL++N+ DA++SRVE   +G      +   I D+G GMT
Sbjct: 36 ALVELVKNAFDADASRVEVRFSGADVAAPTSILIEDDGIGMT 77



 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 18/71 (25%)

Query: 23  PSIAIKELIENSL-----------DAESSRVETVIA---GGGKSFFQITDNGFGMTSEEI 68
            S  +  L++N+            DA   R+   +     G     +++DNG G++  + 
Sbjct: 586 LSQVVANLVDNATYWTAANGGDGKDAG--RIIVHVEPIPDG--FVVRVSDNGKGVSEADR 641

Query: 69  PMAVQRHCTSK 79
            +  + + + K
Sbjct: 642 ELIFEPYFSQK 652


>gi|251792940|ref|YP_003007666.1| DNA topoisomerase IV subunit B [Aggregatibacter aphrophilus
          NJ8700]
 gi|247534333|gb|ACS97579.1| DNA topoisomerase IV, B subunit [Aggregatibacter aphrophilus
          NJ8700]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S++E ++        ++ DNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFASKIEVILHKN--QSIEVIDNGRGMPVD 77


>gi|242372598|ref|ZP_04818172.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
 gi|242349653|gb|EES41254.1| DNA gyrase subunit B [Staphylococcus epidermidis M23864:W1]
          Length = 643

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E +I     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYADQIEVIIEKD--NWIKVTDNGRGIPVD 89


>gi|329116682|ref|ZP_08245399.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020]
 gi|326907087|gb|EGE54001.1| DNA gyrase, B subunit [Streptococcus parauberis NCFD 2020]
          Length = 650

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVYIEED--NSITVVDDGRGIPVD 90


>gi|322688196|ref|YP_004207930.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F]
 gi|320459532|dbj|BAJ70152.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis 157F]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 71  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 115


>gi|322690198|ref|YP_004219768.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320455054|dbj|BAJ65676.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JCM
           1217]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 71  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 115


>gi|317482363|ref|ZP_07941383.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916243|gb|EFV37645.1| DNA gyrase, subunit B [Bifidobacterium sp. 12_1_47BFAA]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 87  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 131


>gi|315659991|ref|ZP_07912849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          lugdunensis M23590]
 gi|315494892|gb|EFU83229.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Staphylococcus
          lugdunensis M23590]
          Length = 644

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E +I     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYADQIEVIIEKD--NWIKVTDNGRGIPVD 89


>gi|312133628|ref|YP_004000967.1| gyrb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772886|gb|ADQ02374.1| GyrB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 71  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 115


>gi|227547507|ref|ZP_03977556.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212022|gb|EEI79918.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 87  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 131


>gi|23465218|ref|NP_695821.1| DNA gyrase subunit B [Bifidobacterium longum NCC2705]
 gi|189440294|ref|YP_001955375.1| DNA gyrase subunit B [Bifidobacterium longum DJO10A]
 gi|239622838|ref|ZP_04665869.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|23325846|gb|AAN24457.1| DNA gyrase subunit B, novobiocin-sensitive [Bifidobacterium longum
           NCC2705]
 gi|189428729|gb|ACD98877.1| Type IIA topoisomerase B subunit [Bifidobacterium longum DJO10A]
 gi|239514835|gb|EEQ54702.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 71  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 115


>gi|23335943|ref|ZP_00121174.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 87  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 131


>gi|23336860|ref|ZP_00121997.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), B subunit [Bifidobacterium longum DJO10A]
          Length = 191

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 77  VYEIVDNSVDEALAGYASHIEITILPDNG---IRVVDDGRGIPVDEVP 121


>gi|256421284|ref|YP_003121937.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036192|gb|ACU59736.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 382

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L++N+LDA      ++  I     +    ITDNG G+         +   ++K
Sbjct: 284 VIENLLKNALDAMEGKGTIDLYIENHPTNIVIDITDNGKGIPKANFEKVFKPGFSTK 340


>gi|159043629|ref|YP_001532423.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
 gi|157911389|gb|ABV92822.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
          Length = 585

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N++DA +      VE  +  G  +   + DNG G+T  +     +   T
Sbjct: 475 RLEQVIVNLLRNAMDATAGTPNPVVEIDLTTGETARLSVRDNGPGIT--DFEQIFEPFYT 532

Query: 78  SK 79
           +K
Sbjct: 533 TK 534


>gi|326513192|dbj|BAK06836.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 23  PSIAIKELIENSLD---AESSRVETV--I-AGGGKSFFQITDNGFGMTSEEIPMA 71
           P  A+ EL++N++D     ++R+     I    G     + D+G GM  + +   
Sbjct: 112 PFGAVAELLDNAVDEIKTGATRIVVDKIINKRNGSPALLVQDDGGGMDPDSMRRC 166


>gi|289551838|ref|YP_003472742.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
 gi|289181369|gb|ADC88614.1| DNA gyrase subunit B [Staphylococcus lugdunensis HKU09-01]
          Length = 640

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E +I     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYADQIEVIIEKD--NWIKVTDNGRGIPVD 85


>gi|167839225|ref|ZP_02465952.1| Signal transduction histidine kinase [Burkholderia thailandensis
           MSMB43]
          Length = 297

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 11/57 (19%)

Query: 30  LIENSL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQR----HCT 77
           LI+N++    D  +  +   +A  G  +  ++ DNG G+  +E     +R    H T
Sbjct: 200 LIDNAIRYAGD-GA-VITVRVARDGALARLEVIDNGPGIAPDERDAVFERFYRSHAT 254


>gi|300856179|ref|YP_003781163.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436294|gb|ADK16061.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 466

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 33  NSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           NS D   + +   I    K +  I DNG GM+ EE+    +R+ 
Sbjct: 378 NSPD---TEIRVSIKKEDKIYINIEDNGKGMSEEEVKKLFERYY 418


>gi|265755252|ref|ZP_06090022.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234394|gb|EEZ19984.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 664

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 23 PSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          P  AI E + N  DA+++ V                 +ITDNG G+  EE+P+  ++   
Sbjct: 22 PERAIAEYVWNGFDAKATVVNIDFEIDNAELDTIKNIRITDNGTGICYEELPIKFKKFYE 81

Query: 78 S 78
          S
Sbjct: 82 S 82


>gi|225574205|ref|ZP_03782815.1| hypothetical protein RUMHYD_02269 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038573|gb|EEG48819.1| hypothetical protein RUMHYD_02269 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 28  KE----LIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
           KE    L++N+L+   + S+ +         +    ++D+G G+  E+I    +R   S
Sbjct: 304 KEALANLVKNALEHTSSGST-IRITWQNTSLTTRILVSDDGCGIPPEDIHHIFKRFYRS 361


>gi|288561864|gb|ADC53568.1| DNA gyrase subunit beta [Pseudomonas syringae pv. syringae]
          Length = 722

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 23/240 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 20  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 77

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 78  AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 136

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 137 ESDSTGTQIH-----FKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 191

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       +  +     +   +  N N      N
Sbjct: 192 LFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQWNDSFNENLLCSTNN 249


>gi|297579726|ref|ZP_06941653.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535372|gb|EFH74206.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 684

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEDHQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|157823155|ref|NP_001100234.1| MORC family CW-type zinc finger protein 2B [Rattus norvegicus]
 gi|149034766|gb|EDL89503.1| rCG29179 [Rattus norvegicus]
          Length = 1019

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++NS DA+++R++          GG     + DNG GM   +    +Q   ++K + +
Sbjct: 35  ELVDNSRDADATRIDIYAERREDLQGGFMLCFL-DNGAGMDPNDAISVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGRYG 101


>gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 594

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 20  IERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           ++R    +  L++N++    D  +  +   +   G     + D+G G+  E++P   +R 
Sbjct: 478 VDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNGVK-IDVKDSGHGIPEEDLPFVFERF 536

Query: 76  C 76
            
Sbjct: 537 Y 537


>gi|119776175|ref|YP_928915.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B]
 gi|119768675|gb|ABM01246.1| DNA topoisomerase IV subunit B [Shewanella amazonensis SB2B]
          Length = 628

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 79/208 (37%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +SR++ ++     +  ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHASRIDVILQTD--NSLEVIDDGRGMPVDIHPEEGIPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  R             G+
Sbjct: 88  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEITVR-RDAQVYDMAFEHGD 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           K+ S+             R  F+  P+   +  S       +  +++  A+  P +   F
Sbjct: 146 KVESLTVTGTCGRRNTGTRVHFWPEPS---YFDSPNFSITKLIHLLKAKAVLCPGLRIKF 202

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIG 214
           +       +++         + +   +G
Sbjct: 203 TN--KQTGEVHEWYFEAGLTDYLKSAVG 228


>gi|218961956|ref|YP_001741731.1| Chaperone protein HtpG [Candidatus Cloacamonas acidaminovorans]
 gi|167730613|emb|CAO81525.1| Chaperone protein HtpG [Candidatus Cloacamonas acidaminovorans]
          Length = 665

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 41/233 (17%)

Query: 27  IKELIENSLDAESSR-------------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           ++ELI NS+DA + R             VE  +   GK   ++ D G GMT EEI   + 
Sbjct: 35  LRELISNSVDAIAKRKYADPNYKEEDMKVEVKLDK-GKKTIEVMDTGIGMTVEEIKKYIN 93

Query: 74  RHCTS-------K---ISDDFSNIHTFGFRGEALPSIGAVS-HLTL--MSRPPQNNTGAQ 120
           +   S       K   I ++       GF      S   V+  +T+  +S    +     
Sbjct: 94  QIAFSGAEDFINKYKDIQNNMIGHFGLGF-----YSAFMVADKVTIDSLSCTEGSEPAFW 148

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +    +      GT V V          LN   +E  + N I +++ R     P
Sbjct: 149 ECDGSTEYIMSKGKRKEIGTTVTVY---------LNEENAEYADPNKIREILERYCNFMP 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
                     + +  +  +  N    E   +     F +    +      +  
Sbjct: 200 YPIMFEGKQVNQKEALWNRKPNEVKDEEYIEFYKNVFHDYMDPVFWIHLNVDF 252


>gi|228989709|ref|ZP_04149691.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228995908|ref|ZP_04155566.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|229003525|ref|ZP_04161343.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228757763|gb|EEM06990.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228763880|gb|EEM12769.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228770043|gb|EEM18625.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 535

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 19  IIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           II      +  LI+N+LDA       RV+  I    K    + D G G+  EEI     +
Sbjct: 423 IIHELITIVGNLIDNALDAVINCQYKRVDISIQYHDKMIITVKDTGVGIRQEEIDKLFVK 482

Query: 75  HCTSK 79
             +SK
Sbjct: 483 GYSSK 487


>gi|320456980|dbj|BAJ67601.1| DNA gyrase subunit B [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 696

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 71  VYEIVDNSVDEALAGYASHIEVSILPDNG---IRVVDDGRGIPVDEVP 115


>gi|213690934|ref|YP_002321520.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522395|gb|ACJ51142.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 709

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 84  VYEIVDNSVDEALAGYASHIEVSILPDNG---IRVVDDGRGIPVDEVP 128


>gi|238018370|ref|ZP_04598796.1| hypothetical protein VEIDISOL_00195 [Veillonella dispar ATCC 17748]
 gi|237864841|gb|EEP66131.1| hypothetical protein VEIDISOL_00195 [Veillonella dispar ATCC 17748]
          Length = 471

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           I A E+      AI  L++N++   +S ++      G      +TDNG G+  E +    
Sbjct: 355 IVAHEV--SLRRAITNLVDNAIKFTNSTIDISAKLAGGELVITVTDNGIGIEPENLEHIW 412

Query: 73  QR 74
            R
Sbjct: 413 DR 414


>gi|255692967|ref|ZP_05416642.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
 gi|260621278|gb|EEX44149.1| DNA gyrase, B subunit [Bacteroides finegoldii DSM 17565]
          Length = 652

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 88


>gi|187935003|ref|YP_001885076.1| anti-sigma F factor [Clostridium botulinum B str. Eklund 17B]
 gi|226732538|sp|B2TLY1|SP2AB_CLOBB RecName: Full=Anti-sigma F factor; AltName: Full=Stage II
           sporulation protein AB
 gi|187723156|gb|ACD24377.1| anti-sigma F factor [Clostridium botulinum B str. Eklund 17B]
          Length = 143

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSL--------DAESSRVETVIAGGGKSFF 54
           I +L    I++I+          A+ E + NS+        D    ++E  I  G  +  
Sbjct: 28  IAQLDP-TIDEIS------DVKTAVSEAVTNSIIHGYENKED-GVIKIEVEICDGEVT-I 78

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGF 92
           +ITDNG G+  E+IP  ++   TS    D       GF
Sbjct: 79  EITDNGKGI--EDIPKVMEPLYTS--RPDLER-SGMGF 111


>gi|149201722|ref|ZP_01878696.1| two component sensor kinase [Roseovarius sp. TM1035]
 gi|149144770|gb|EDM32799.1| two component sensor kinase [Roseovarius sp. TM1035]
          Length = 438

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++D   + V   + G   + F++ D+G G+   E     +   
Sbjct: 349 LVQNAIDHGGTNVVVRVLG---TAFEVEDDGPGIPPTERERVFEPFH 392


>gi|188582500|ref|YP_001925945.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179345998|gb|ACB81410.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 622

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+LDA + R    +   I   G+    ++ DNG G+             
Sbjct: 501 RLEQVVVNLLQNALDAVTGRPDPWIAVRIEEAGERVAVEVADNGPGIPEAVRAQVFDPFF 560

Query: 77  TSK 79
           T+K
Sbjct: 561 TTK 563


>gi|94983855|gb|ABF50632.1| DNA topoisomerase IV subunit B [Entomoplasma freundtii]
          Length = 554

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ +   +   G     ++DNG G+ 
Sbjct: 14 EIVDNSIDEALAGYATEINVTMEKNG--SITVSDNGRGVP 51


>gi|28492972|ref|NP_787133.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist]
 gi|28572180|ref|NP_788960.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
 gi|28410311|emb|CAD66697.1| DNA gyrase subunit B [Tropheryma whipplei TW08/27]
 gi|28476012|gb|AAO44102.1| DNA gyrase subunit B [Tropheryma whipplei str. Twist]
          Length = 649

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + EL++NS+D   A   +++   I A GG    ++TDNG G+  +
Sbjct: 43 VYELVDNSVDEALAGYCTKINVAILADGG---VRVTDNGRGIPVD 84


>gi|312138547|ref|YP_004005883.1| chaperone protein htpg [Rhodococcus equi 103S]
 gi|311887886|emb|CBH47198.1| putative chaperone protein HtpG [Rhodococcus equi 103S]
          Length = 650

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 48/192 (25%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA              E+      +E  +    ++   + DNG GM+ +E+
Sbjct: 33  LRELVSNASDALDKLKLEAYRDKDLEADTSDLHIELEVDADTRTL-TVRDNGIGMSRDEV 91

Query: 69  PMAVQRHCTS-------KISDDFSNIHT--------FGFRGEALPSIGAVS-HLTLMSRP 112
              +     S       K+ +      +         GF      S   V+  +TL++R 
Sbjct: 92  IDLIGTLAKSGTAELRRKLREAKDAAASEELIGQFGIGF-----YSTFMVADKVTLLTRK 146

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVE-------VRDLFFTIPARLNFLKSEQVE 164
                G +   SG+   ++  V     GT V        V D  +   +     +  +  
Sbjct: 147 AGEKHGTRWESSGDATYTIETVDDAPQGTSVTLHLKPEDVEDHLYDYASERKLREIVKRY 206

Query: 165 TNLITDVIRRMA 176
           ++ I   +R   
Sbjct: 207 SDFIAYPVRMQV 218


>gi|289167707|ref|YP_003445976.1| DNA gyrase, B subunit [Streptococcus mitis B6]
 gi|288907274|emb|CBJ22109.1| DNA gyrase, B subunit [Streptococcus mitis B6]
          Length = 648

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIEVFIEPD--DSITVVDDGRGIPVD 88


>gi|229819267|ref|YP_002880793.1| histidine kinase [Beutenbergia cavernae DSM 12333]
 gi|229565180|gb|ACQ79031.1| histidine kinase [Beutenbergia cavernae DSM 12333]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 23  PSIAIKELIENSL---DAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              A++ L++N+L   D   +RV   +     G     + D G G++++E+P   +R  
Sbjct: 269 LVTALRNLLDNALRYSDRG-TRVSIGVDTADDGMVEIAVVDQGVGISADELPRVFERFY 326


>gi|204931274|ref|ZP_03222034.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204319889|gb|EDZ05096.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 465

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TDNG G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|78707349|gb|ABB46480.1| DNA gyrase subunit B [Acholeplasma granularum]
 gi|78707351|gb|ABB46481.1| DNA gyrase subunit B [Acholeplasma granularum]
 gi|78707353|gb|ABB46482.1| DNA gyrase subunit B [Acholeplasma granularum]
          Length = 587

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I  G     ++TDNG G+  +
Sbjct: 23 EIVDNSIDEALAGYADEINIEILKGNI--VRVTDNGRGIPVD 62


>gi|325284316|ref|YP_004256856.1| hypothetical protein Deipr_2369 [Deinococcus proteolyticus MRP]
 gi|324316380|gb|ADY27493.1| hypothetical protein Deipr_2369 [Deinococcus proteolyticus MRP]
          Length = 569

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 27 IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          ++EL++NSL A +S ++      G S   + D+G G+   ++ +   R
Sbjct: 28 VRELLQNSLRAGASHIQFETTDQGFS---VQDDGHGLEDPQLLLTAAR 72


>gi|296284083|ref|ZP_06862081.1| DNA topoisomerase IV subunit B [Citromicrobium bathyomarinum
          JL354]
          Length = 662

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          E+++NS+D   A  ++R+E  +  G  +   I DNG GM  +E P 
Sbjct: 52 EVLDNSMDEAVAGHATRIEVKLEEG--NRLTIADNGRGMPIDEHPK 95


>gi|148974232|ref|ZP_01811765.1| C4-dicarboxylate transport sensor protein, putative [Vibrionales
           bacterium SWAT-3]
 gi|145965929|gb|EDK31177.1| C4-dicarboxylate transport sensor protein, putative [Vibrionales
           bacterium SWAT-3]
          Length = 687

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA--ESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N++DA         VI+      +   ++ DNG G++ +++    +   
Sbjct: 579 RLRQVLGNLLSNAIDATQNQKTATIVISAHTEQERVIIKVQDNGCGVSEDQLETIFEPFH 638

Query: 77  TSK 79
           T+K
Sbjct: 639 TNK 641


>gi|220911376|ref|YP_002486685.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Arthrobacter chlorophenolicus A6]
 gi|219858254|gb|ACL38596.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Arthrobacter chlorophenolicus A6]
          Length = 524

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 30  LIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L++N+ DA     +++ V  ++  G G+    + DNG G+ ++      ++  T+K    
Sbjct: 424 LVDNAFDAVSGLPQAT-VRVLVEDGEGQVVVTVRDNGHGVPADAADHIFRQGFTTK---- 478

Query: 84  FSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
             +    G RG  L     +S +    R    +  
Sbjct: 479 --DARREGGRGFGLA----LSRVVC--RRSGGDLA 505


>gi|332308317|ref|YP_004436168.1| hypothetical protein Glaag_3975 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175646|gb|AEE24900.1| hypothetical protein Glaag_3975 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 456

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 24  SIAIKELIENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           S A+ ++++NSL A +  +    +  G       I D+G GM+ +E+   ++  C  K  
Sbjct: 26  SSAVSDILDNSLTANAKNIAIH-SLPGLEEPNLSIVDDGKGMSPDELIHNMKIGC--KDP 82

Query: 82  DDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM 136
            D       G  G  L   S      LT++S+       A      ++I +     +
Sbjct: 83  SDERLRGDLGRFGSGLKTASFSQARKLTVISKKVGEPICA-AVWDIDRIENENTWCL 138


>gi|297710709|ref|XP_002832012.1| PREDICTED: MORC family CW-type zinc finger protein 4-like isoform 2
           [Pongo abelii]
          Length = 900

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI ELI+N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELIDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|297710707|ref|XP_002832011.1| PREDICTED: MORC family CW-type zinc finger protein 4-like isoform 1
           [Pongo abelii]
          Length = 937

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI ELI+N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELIDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|78707345|gb|ABB46478.1| DNA gyrase subunit B [Acholeplasma equifetale]
 gi|78707347|gb|ABB46479.1| DNA gyrase subunit B [Acholeplasma equifetale]
          Length = 588

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +E  +     +  +++DNG G+  +
Sbjct: 23 EIVDNSIDEALAGYADHIEIEVLKD--NVIRVSDNGRGIPVD 62


>gi|315639591|ref|ZP_07894731.1| sensor histidine kinase [Enterococcus italicus DSM 15952]
 gi|315484552|gb|EFU75008.1| sensor histidine kinase [Enterococcus italicus DSM 15952]
          Length = 576

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 23  PSIAIKELIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
               +K LIEN+L    DA  + ++ + +   +    Q+ D G G+  E+     +R  
Sbjct: 470 LQAILKNLIENALYYSRDA--TTIQILFSQVNQELTIQVKDQGVGIDEEDQKRIFERFY 526


>gi|288919492|ref|ZP_06413823.1| ATPase [Frankia sp. EUN1f]
 gi|288349095|gb|EFC83341.1| ATPase [Frankia sp. EUN1f]
          Length = 434

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 37/218 (16%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           P+     L++NS+ A ++ V+ VI   G      I D+G GM+   +  A++    S+ S
Sbjct: 28  PAAVAD-LVDNSVSAGATHVQVVIRFDGVDSRVLIADDGVGMSENALVEALRFG--SRRS 84

Query: 82  DDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQN---------NTGAQIAISGEKISS 130
                 +  G  G  L   S+     +T+++R   +         + G    +    +  
Sbjct: 85  ---YQENELGRYGLGLKTASLSQGRSVTVVTRRSASADRVFIRELDLGLVEELDEWLVVV 141

Query: 131 VRPV----------AMNPGTIVEVRDLFFTIP--------ARLNFLKSEQVETNLITDVI 172
            R                GT+V  RDL   +P        AR       +   + +  V 
Sbjct: 142 PRRSAELDDARELLGAGCGTVVLWRDLDRVLPESRPDGGWARRRLDSYARKTADHLAIVF 201

Query: 173 RRMAIAYPK-VSFTFSTIKSNRYKMNFQSTNGNFPERI 209
            R     P     T S         N  + +      +
Sbjct: 202 HRFLEGLPDGRKVTISVNGEKVRPWNPYAPDEEHRREL 239


>gi|254436846|ref|ZP_05050340.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198252292|gb|EDY76606.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 598

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 16/84 (19%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N+LDA  ++      VE ++A G  +   + DNG G+  +++    +  
Sbjct: 476 RLEQVIINLLRNALDA--TKMAAEPSVEILLAQGDVARLSVRDNGTGI--QDLDELFEPF 531

Query: 76  CTSKISDDFSNIHTFGFRGEALPS 99
            T+K + D + +      G A+ S
Sbjct: 532 YTTKQAGDGTGL------GLAISS 549


>gi|329123547|ref|ZP_08252110.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius
          ATCC 11116]
 gi|327470363|gb|EGF15821.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus aegyptius
          ATCC 11116]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|319776382|ref|YP_004138870.1| DNA topoisomerase IV subunit B [Haemophilus influenzae F3047]
 gi|317450973|emb|CBY87202.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3047]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|319897148|ref|YP_004135343.1| DNA topoisomerase iv, subunit b [Haemophilus influenzae F3031]
 gi|317432652|emb|CBY81015.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae F3031]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|296453192|ref|YP_003660335.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum JDM301]
 gi|296182623|gb|ADG99504.1| DNA gyrase, B subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 709

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 84  VYEIVDNSVDEALAGYASHIEVTILPDNG---IRVVDDGRGIPVDEVP 128


>gi|291517729|emb|CBK71345.1| DNA gyrase subunit B [Bifidobacterium longum subsp. longum F8]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 87  VYEIVDNSVDEALAGYASHIEVTILPDNG---IRVVDDGRGIPVDEVP 131


>gi|260583321|ref|ZP_05851095.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127]
 gi|260093634|gb|EEW77548.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae NT127]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|291455697|ref|ZP_06595087.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213]
 gi|291382625|gb|EFE90143.1| DNA gyrase, B subunit [Bifidobacterium breve DSM 20213]
          Length = 712

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 87  VYEIVDNSVDEALAGYASHIEVTILPDNG---IRVVDDGRGIPVDEVP 131


>gi|261338542|ref|ZP_05966426.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276563|gb|EFA22417.1| DNA gyrase, B subunit [Bifidobacterium gallicum DSM 20093]
          Length = 706

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 82  VYEIVDNSVDEALAGYASHIEVTILPDNG---IRVVDDGRGIPVDEVP 126


>gi|297583784|ref|YP_003699564.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297142241|gb|ADH98998.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 472

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 22/98 (22%)

Query: 1   MKIRKLSEKII---NQIAA------------GEIIE----RPSIAIKELIENSLDAE--S 39
           M + +L E +    N IA             G IIE    R    I  LIEN++      
Sbjct: 320 MPLAQLVEDVCERMNLIAEKDDVTVNLELDYGIIIEGDESRLEQVISNLIENAIRYGKQG 379

Query: 40  SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +++  +    GK+  ++ D G GM  E +    +R  
Sbjct: 380 KQIDVSLEQADGKAVLRVRDYGAGMPPETLTRLTERFY 417


>gi|145634903|ref|ZP_01790610.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA]
 gi|145267769|gb|EDK07766.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittAA]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|145642081|ref|ZP_01797652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|145273261|gb|EDK13136.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.4-21]
          Length = 430

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|145631948|ref|ZP_01787702.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
 gi|144982399|gb|EDJ89973.1| DNA topoisomerase IV subunit B [Haemophilus influenzae R3021]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|145629698|ref|ZP_01785494.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21]
 gi|144978035|gb|EDJ87814.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 22.1-21]
          Length = 617

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|34305633|gb|AAQ63623.1| Tmp4 [Bifidobacterium breve UCC2003]
          Length = 592

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +E+P
Sbjct: 87  VYEIVDNSVDEALAGYASHIEVTILPDNG---IRVVDDGRGIPVDEVP 131


>gi|16273428|ref|NP_439677.1| DNA topoisomerase IV subunit B [Haemophilus influenzae Rd KW20]
 gi|260580311|ref|ZP_05848140.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW]
 gi|1172018|sp|P43703|PARE_HAEIN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
          Full=Topoisomerase IV subunit B
 gi|1574369|gb|AAC23174.1| topoisomerase IV, subunit B (parE) [Haemophilus influenzae Rd
          KW20]
 gi|260092988|gb|EEW76922.1| DNA topoisomerase IV, B subunit [Haemophilus influenzae RdAW]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|145639071|ref|ZP_01794679.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII]
 gi|145272043|gb|EDK11952.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittII]
 gi|309751023|gb|ADO81007.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2866]
          Length = 632

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|296447820|ref|ZP_06889733.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296254679|gb|EFH01793.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 665

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 22  RPSIAIKELIENS----LDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           R + AI  L++N+    LD    R++ ++   G     ++ D+G G+ +E +P   +   
Sbjct: 417 RLAQAIANLLDNAAKYTLDGG--RIDIMLKREGAEAVVEVRDDGVGIPAEMLPHMFELFA 474

Query: 77  TS 78
            S
Sbjct: 475 RS 476


>gi|323487683|ref|ZP_08092941.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
 gi|323398417|gb|EGA91205.1| DNA gyrase subunit B [Planococcus donghaensis MPA1U2]
          Length = 642

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     ++ ++ DNG G+ 
Sbjct: 48 EIVDNSIDEALAGHCTEIRVSIEPD--NWIRVEDNGRGIP 85


>gi|126435827|ref|YP_001071518.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. JLS]
 gi|126235627|gb|ABN99027.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. JLS]
          Length = 539

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 15  AAGEIIERPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           AA ++I         LI+N++D    + ++RV   I         + D G G+       
Sbjct: 425 AATDVITLLGN----LIDNAVDVSVGSGAARVSVRIDDADGLSITVADTGPGVPEHLREE 480

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEALP 98
              R  TSK         + G RG  L 
Sbjct: 481 IFARGVTSK-------PESPGGRGIGLA 501


>gi|108800204|ref|YP_640401.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. MCS]
 gi|119869332|ref|YP_939284.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. KMS]
 gi|108770623|gb|ABG09345.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. MCS]
 gi|119695421|gb|ABL92494.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. KMS]
          Length = 539

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 15  AAGEIIERPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           AA ++I         LI+N++D    + ++RV   I         + D G G+       
Sbjct: 425 AATDVITLLGN----LIDNAVDVSVGSGAARVSVRIDDADGLSITVADTGPGVPEHLREE 480

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEALP 98
              R  TSK         + G RG  L 
Sbjct: 481 IFARGVTSK-------PESPGGRGIGLA 501


>gi|126650076|ref|ZP_01722309.1| Sensory transduction histidine kinase [Bacillus sp. B14905]
 gi|126593248|gb|EAZ87210.1| Sensory transduction histidine kinase [Bacillus sp. B14905]
          Length = 480

 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 22  RPSIAIKELIENSL--DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N+L   +    +     I      + Q+ DNG GM  E++P   +R+
Sbjct: 370 RLEQVISNLVTNALKHTSNGDTITITTYIEDQTL-YIQVIDNGNGMLPEDMPFIFERY 426


>gi|325285912|ref|YP_004261702.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324321366|gb|ADY28831.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 382

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N +DA      +   I   G      ++D G G+             TSK
Sbjct: 287 LVKNGIDAMRGKGHIAIEIIPAGSFVNILVSDTGHGIPKGNYASIFNPGHTSK 339


>gi|259909654|ref|YP_002650010.1| hypothetical protein EpC_30290 [Erwinia pyrifoliae Ep1/96]
 gi|224965276|emb|CAX56808.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|261863699|gb|ACY01310.1| unknown [Erwinia pyrifoliae]
 gi|283479731|emb|CAY75647.1| hypothetical protein EPYR_03267 [Erwinia pyrifoliae DSM 12163]
          Length = 726

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 24/97 (24%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIE---NSLDAESSRVETVIAGGGKSFFQITDN 59
          L  +II+ I    AG          K LIE   NS+DA +S V   I   G S     D+
Sbjct: 7  LDPQIIHHIIYSQAG-------SIGKALIELMMNSVDAGASMVSIDITPEGFSC---RDD 56

Query: 60 GFGMTS-EEIPMAVQRHCT-SKISDDFSNIHTFG-FR 93
          G G  S E++     R  T  K  D      T+G FR
Sbjct: 57 GRGFASYEDVKRYFGRFGTPHKEGD-----ATYGRFR 88


>gi|312897423|ref|ZP_07756847.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
 gi|310621484|gb|EFQ05020.1| DNA gyrase, B subunit [Megasphaera micronuciformis F0359]
          Length = 647

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + DNG G+ 
Sbjct: 53 VYEVVDNSIDEALAGYCTHIEVTIEED--NSITVVDNGRGIP 92


>gi|149202494|ref|ZP_01879466.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius sp. TM1035]
 gi|149143776|gb|EDM31810.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius sp. TM1035]
          Length = 586

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N++DA  +       ++ ++A G  +   + DNG G+   +     +  
Sbjct: 476 RVEQVIVNLLRNAIDA--TNTVPDAIIDILLAAGETAVLTVRDNGEGIG--DFKNLFEPF 531

Query: 76  CTSK 79
            T+K
Sbjct: 532 YTTK 535


>gi|134098150|ref|YP_001103811.1| ATPase [Saccharopolyspora erythraea NRRL 2338]
 gi|291007571|ref|ZP_06565544.1| ATPase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910773|emb|CAM00886.1| ATPase [Saccharopolyspora erythraea NRRL 2338]
          Length = 500

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 17/104 (16%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTS---EEIPMAVQRH 75
              + A+ +L++NS+DA +  V        G      + D+G GM++   +       R 
Sbjct: 30  HSLATALSDLVDNSVDAGADHVLIRFIRHRGRICSLYVVDDGRGMSAAAIDNAMTIGGRR 89

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNN 116
                     +    G  G  L S  + S    LT+ SR     
Sbjct: 90  T--------YHERDLGHFGMGLQS-ASFSQARTLTVFSRAVGCE 124


>gi|254373469|ref|ZP_04988957.1| topoisomerase IV [Francisella tularensis subsp. novicida
          GA99-3549]
 gi|151571195|gb|EDN36849.1| topoisomerase IV [Francisella novicida GA99-3549]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|153008163|ref|YP_001369378.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560051|gb|ABS13549.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 605

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   ++G G      + DNG G+  E I    +R 
Sbjct: 489 RLGQVVSNLIENARSFVPDDTG--RIVVSLSGEGSRLRVLVEDNGPGIPIENIERIFERF 546

Query: 76  CT 77
            T
Sbjct: 547 YT 548


>gi|149923184|ref|ZP_01911597.1| hypothetical protein PPSIR1_34153 [Plesiocystis pacifica SIR-1]
 gi|149815958|gb|EDM75474.1| hypothetical protein PPSIR1_34153 [Plesiocystis pacifica SIR-1]
          Length = 594

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 18/70 (25%)

Query: 15 AAGEI----------IERPSIAIKELIENSLDAESSRVETVIA---GGGKS-----FFQI 56
          AA E+           E P   ++EL++N++DA S RVE  +      G+         +
Sbjct: 2  AASEVDALLERLVAQFESPYDFLRELVQNAMDAGSDRVEVSLETHPAAGEGDEVVFELTV 61

Query: 57 TDNGFGMTSE 66
           D G GM   
Sbjct: 62 VDTGAGMDEA 71


>gi|56707333|ref|YP_169229.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110669803|ref|YP_666360.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          tularensis FSC198]
 gi|224456396|ref|ZP_03664869.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254370010|ref|ZP_04986017.1| DNA topoisomerase [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874168|ref|ZP_05246878.1| topoisomerase IV [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|56603825|emb|CAG44796.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110320136|emb|CAL08179.1| Topoisomerase IV, subunit B [Francisella tularensis subsp.
          tularensis FSC198]
 gi|151568255|gb|EDN33909.1| DNA topoisomerase [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254840167|gb|EET18603.1| topoisomerase IV [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158458|gb|ADA77849.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          tularensis NE061598]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|39933446|ref|NP_945722.1| aminoacyl-tRNA synthetase [Rhodopseudomonas palustris CGA009]
 gi|39647292|emb|CAE25813.1| Aminoacyl-tRNA synthetase, class I:ATP-binding region, ATPase-like
           [Rhodopseudomonas palustris CGA009]
          Length = 867

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 20  IERPSIAIKELIENSLDAES----------SRVETVIAG--GGKSFFQITDNGFGMTSEE 67
           I+  ++ ++EL++N+ DA +           R+   +A      S  ++ D+G GM+   
Sbjct: 384 IDEFAVVMRELLQNARDAIAARRSLTPEFSGRISVKVARRSDTHSTIEVRDDGVGMSERT 443

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFR 93
           +  ++    TS  + D       G R
Sbjct: 444 MTTSLLDFGTSFWASDLVKSEFPGLR 469


>gi|332184662|gb|AEE26916.1| Topoisomerase IV subunit B [Francisella cf. novicida 3523]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|323705855|ref|ZP_08117427.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534851|gb|EGB24630.1| DNA topoisomerase IV, B subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 633

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 19/103 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAV 72
           + E+++NS+D   A     ++ +I     +   + D+G G+ ++          E+ + V
Sbjct: 41  VYEIVDNSIDEALAGYCKNIDVIIHKD--NSVSVIDDGRGIPTDIHPQTGKSGVEVALTV 98

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQ 114
             H   K ++D   + + G  G  L  + A+S  L ++ +   
Sbjct: 99  L-HAGGKFNNDVYKV-SGGLHGVGLSVVNALSKNLEVIVKQNG 139


>gi|254374930|ref|ZP_04990411.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548]
 gi|151572649|gb|EDN38303.1| hypothetical protein FTDG_01110 [Francisella novicida GA99-3548]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|118498118|ref|YP_899168.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          novicida U112]
 gi|194323345|ref|ZP_03057129.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
          novicida FTE]
 gi|208779469|ref|ZP_03246814.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG]
 gi|118424024|gb|ABK90414.1| topoisomerase IV, subunit B [Francisella novicida U112]
 gi|194322709|gb|EDX20189.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
          novicida FTE]
 gi|208744430|gb|EDZ90729.1| DNA topoisomerase IV, B subunit [Francisella novicida FTG]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|150390046|ref|YP_001320095.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149949908|gb|ABR48436.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 181

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 28 KEL-------IENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          KEL        +NS+ A++ ++E  I       +   +I+D+G GM ++    AV   CT
Sbjct: 2  KELSLHILDIAQNSIAAKAKKIEIHIWEDLENNQLRIKISDDGNGMDAKLAKRAVDPFCT 61

Query: 78 S 78
          S
Sbjct: 62 S 62


>gi|332366316|gb|EGJ44068.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK1059]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|332362817|gb|EGJ40611.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK355]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|332361540|gb|EGJ39344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK1056]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|328945965|gb|EGG40112.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK1087]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|327489313|gb|EGF21106.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK1058]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|327469614|gb|EGF15083.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK330]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|327459890|gb|EGF06230.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK1057]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|325696789|gb|EGD38677.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK160]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|325687830|gb|EGD29850.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK72]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|260588962|ref|ZP_05854875.1| sensor histidine kinase [Blautia hansenii DSM 20583]
 gi|331083316|ref|ZP_08332429.1| hypothetical protein HMPREF0992_01353 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540741|gb|EEX21310.1| sensor histidine kinase [Blautia hansenii DSM 20583]
 gi|330404397|gb|EGG83942.1| hypothetical protein HMPREF0992_01353 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 498

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 23/139 (16%)

Query: 14  IAAGEIIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEE 67
           IA  E I+R    +  ++ NSL    D +  R+   +   G  F Q+   DNG G+ +++
Sbjct: 377 IADAEQIKR---VVNNIVSNSLKYTGDGKQKRINLRVKDVG-DFIQVEIEDNGKGIAAKD 432

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
           +P    R        D S   + G  G     IG    L+++ +  +++ G   A S E 
Sbjct: 433 LPNIFDRFY----RTDASRNSSKGGSG-----IG----LSIVKKIMEDHGGKVWATSKEN 479

Query: 128 ISSVRPVAMNPGTIVEVRD 146
           I +V    +     V V +
Sbjct: 480 IGTVMYFVLRKYQEVPVNE 498


>gi|218671231|ref|ZP_03520902.1| integral membrane sensor signal transduction histidine kinase
          [Rhizobium etli GR56]
          Length = 98

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 26 AIKELIENSLDAESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          A+  L+ N++D   +R  +   ++  G     +TD G G+ +E   +  +   
Sbjct: 3  AVSNLVRNAIDHGGNRGMITVSVSDIGGGRISVTDEGPGIPAEHRELVFEPFY 55


>gi|187931098|ref|YP_001891082.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|187712007|gb|ACD30304.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
          mediasiatica FSC147]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|134301370|ref|YP_001121338.1| DNA topoisomerase IV subunit B [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134049147|gb|ABO46218.1| DNA topoisomerase IV, B subunit [Francisella tularensis subsp.
          tularensis WY96-3418]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|125717721|ref|YP_001034854.1| DNA gyrase subunit B [Streptococcus sanguinis SK36]
 gi|323351846|ref|ZP_08087497.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis VMC66]
 gi|125497638|gb|ABN44304.1| DNA gyrase, putative [Streptococcus sanguinis SK36]
 gi|322121903|gb|EFX93635.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis VMC66]
 gi|324990928|gb|EGC22863.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK353]
 gi|324993188|gb|EGC25108.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK405]
 gi|324995509|gb|EGC27421.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK678]
 gi|325689965|gb|EGD31969.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK115]
 gi|325694221|gb|EGD36137.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK150]
 gi|327461458|gb|EGF07789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK1]
 gi|327473763|gb|EGF19181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK408]
 gi|332359588|gb|EGJ37406.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis SK49]
          Length = 649

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + DNG G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDNGRGIPVD 89


>gi|332186515|ref|ZP_08388259.1| HAMP domain protein [Sphingomonas sp. S17]
 gi|332013498|gb|EGI55559.1| HAMP domain protein [Sphingomonas sp. S17]
          Length = 458

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 30  LIENSLDAES--SRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           LI N++   +   R++  +    G +   ++ D+G G++ E+  +A++R           
Sbjct: 360 LIGNAIKHGAPGGRIQVTLEAADGDRLALRVADDGPGISPEDRALALRRFG------RLD 413

Query: 86  NIHTFGFRGEALPSIGAVSHL 106
           +  T    G  LP + A++ L
Sbjct: 414 SARTRAGHGLGLPLVAAIARL 434


>gi|302344083|ref|YP_003808612.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301640696|gb|ADK86018.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 354

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 22  RPSIAIKELIENSLDA---ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           R    +  L++N++ A    +  + +    G      + D G G+ +E++        T+
Sbjct: 243 RLRQVLLNLMQNAIQASPRGARVIVSTAREGDFGLITVGDQGCGIAAEDLARIFNPFFTT 302

Query: 79  K 79
           K
Sbjct: 303 K 303


>gi|284010223|dbj|BAI66711.1| DNA gyrase B [Borrelia sp. BF16]
          Length = 625

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + ELI+NS+D   A    ++E VI     S   ++DNG G+ ++
Sbjct: 28 VYELIDNSIDEALAGFCDKIEVVINSD--SSITVSDNGRGIPTD 69


>gi|167771655|ref|ZP_02443708.1| hypothetical protein ANACOL_03027 [Anaerotruncus colihominis DSM
           17241]
 gi|167666295|gb|EDS10425.1| hypothetical protein ANACOL_03027 [Anaerotruncus colihominis DSM
           17241]
          Length = 636

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 41/182 (22%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                SR    +   I    ++   + DNG GM+ +E+
Sbjct: 29  LRELISNASDAIDKLYYHSLNENITGLSRDDFAINLSIDRENRTL-TVIDNGIGMSRDEL 87

Query: 69  P-----------MAVQRHCTSKISDDFSNIHTF--GFRGEALPSIGAVSH-LTLMSRPPQ 114
                       +A ++  T +  DD   I  F  GF      S   VS  +T+ SR   
Sbjct: 88  ESNLGTIAKSGSLAFKQEETGEHKDDIDIIGQFGVGF-----YSAFMVSSCVTVYSRQHG 142

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
            +   +    G +  ++ P  M+      V  +             E ++ + I  ++RR
Sbjct: 143 ADEAWKWESRGIEGYTIEPCDMSERGTKIVLRIKDN---EGEDNYDEFLDAHRIAALVRR 199

Query: 175 MA 176
            +
Sbjct: 200 YS 201


>gi|166367564|ref|YP_001659837.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
 gi|166089937|dbj|BAG04645.1| DNA gyrase subunit B [Microcystis aeruginosa NIES-843]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDIKADG--SVSVTDDGRGIPTD 80


>gi|159028965|emb|CAO87426.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDIKADG--SVSVTDDGRGIPTD 80


>gi|19909729|dbj|BAB87060.1| DNA gyrase subunit B [Microcystis wesenbergii NIES-104]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 4  VYEVVDNSIDEALAGYCTHIEVDIKADG--SVSVTDDGRGIPTD 45


>gi|19909727|dbj|BAB87059.1| DNA gyrase subunit B [Microcystis viridis NIES-102]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 4  VYEVVDNSIDEALAGYCTHIEVDIKADG--SVSVTDDGRGIPTD 45


>gi|23978259|dbj|BAC21119.1| DNA gyrase B subunit [Xenococcus sp. PCC 7307]
          Length = 395

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSIDEALAGFCTHIEVDINADG--SITVTDDGRGIP 49


>gi|23978227|dbj|BAC21110.1| DNA gyrase B subunit [Microcystis wesenbergii]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEVDIKADG--SVSVTDDGRGIPTD 51


>gi|85702981|ref|ZP_01034085.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius sp. 217]
 gi|85671909|gb|EAQ26766.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius sp. 217]
          Length = 574

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N++DA  +       +E ++A G  +   + DNG G+   +     +  
Sbjct: 464 RVEQVIVNLLRNAIDA--TNTVPDAVIEILLAAGETAVLTVRDNGEGIG--DFKNLFEPF 519

Query: 76  CTSK 79
            T+K
Sbjct: 520 YTTK 523


>gi|229084578|ref|ZP_04216848.1| hypothetical protein bcere0022_12120 [Bacillus cereus Rock3-44]
 gi|228698728|gb|EEL51443.1| hypothetical protein bcere0022_12120 [Bacillus cereus Rock3-44]
          Length = 450

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 18  EIIERPS------IAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEE 67
           +++E P         +  LI+N++   DA    ++       G   F++ D+G G+  E+
Sbjct: 330 QVVEHPFDPDRMEQVLTNLIDNAIRHTDAGGHVKLVIDTKNNGL-IFEVQDSGAGIPEED 388

Query: 68  IPMAVQRHC 76
           IP    R  
Sbjct: 389 IPFLFDRFY 397


>gi|290243045|ref|YP_003494715.1| hypothetical protein TK90_2763 [Thioalkalivibrio sp. K90mix]
 gi|288945550|gb|ADC73248.1| conserved hypothetical protein [Thioalkalivibrio sp. K90mix]
          Length = 563

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 20/68 (29%)

Query: 28 KELIE---NSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          K L+E   NS+DA ++ +   +   G   F++ DNG G+                I D  
Sbjct: 26 KALLEFVMNSVDAHATEMTIEMDRHG---FRVEDNGKGIQR--------------IHDVE 68

Query: 85 SNIHTFGF 92
          + + T GF
Sbjct: 69 TCLGTLGF 76


>gi|332678845|gb|AEE87974.1| Topoisomerase IV subunit B [Francisella cf. novicida Fx1]
          Length = 627

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E P+  I+E+I+NS+D   A  +S++   +     +  ++ D+G GM  +
Sbjct: 29 ENPNHLIQEIIDNSVDEVLAGFASKINITLYED--NSIEVADDGRGMPVD 76


>gi|293497972|ref|ZP_06665826.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291096903|gb|EFE27161.1| DNA gyrase, B subunit [Staphylococcus aureus subsp. aureus
          58-424]
          Length = 644

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++++E VI     ++ ++TDNG G+ 
Sbjct: 50 EIVDNSIDEALAGYANQIEVVIEKD--NWIKVTDNGRGIP 87


>gi|251780881|ref|ZP_04823801.1| anti-sigma F factor [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085196|gb|EES51086.1| anti-sigma F factor [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 143

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSL--------DAESSRVETVIAGGGKSFF 54
           I +L    I++I+          A+ E + NS+        D    R+E  I  G  +  
Sbjct: 28  IAQLDP-TIDEIS------DVKTAVSEAVTNSIIHGYENKED-GIIRIEVEICDGEVT-I 78

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGF 92
           +ITDNG G+  E+IP  ++   TS    D       GF
Sbjct: 79  EITDNGKGI--EDIPKVMEPLYTS--RPDLER-SGMGF 111


>gi|229524916|ref|ZP_04414321.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229338497|gb|EEO03514.1| DNA gyrase subunit B [Vibrio cholerae bv. albensis VL426]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVITIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|52081647|ref|YP_080438.1| sensory histidine kinase DcuS [Bacillus licheniformis ATCC 14580]
 gi|52787030|ref|YP_092859.1| sensory histidine kinase DcuS [Bacillus licheniformis ATCC 14580]
 gi|319647563|ref|ZP_08001783.1| YufL protein [Bacillus sp. BT1B_CT2]
 gi|52004858|gb|AAU24800.1| putative Histidine kinase [Bacillus licheniformis ATCC 14580]
 gi|52349532|gb|AAU42166.1| YufL [Bacillus licheniformis ATCC 14580]
 gi|317390411|gb|EFV71218.1| YufL protein [Bacillus sp. BT1B_CT2]
          Length = 533

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 19  IIERPSIAIKELIENSLDA-ESS---RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAV 72
           +I      I  L+ N+LDA  ++    +        G     ++TD G G++ EE     
Sbjct: 420 VIHDLITVIGNLLNNALDAVSATEKKNISISFRHHDGQLD-IEVTDTGVGISKEEQQKMF 478

Query: 73  QRHCTSK 79
            +  ++K
Sbjct: 479 DQGFSTK 485


>gi|45644630|gb|AAS73018.1| predicted topoisomerase IV subunit B [uncultured marine gamma
          proteobacterium EBAC20E09]
          Length = 605

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 15/74 (20%)

Query: 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---EIPM----- 70
          P+  I+E+++N++D   A   S ++  +   G    +++D+G GM  +   +  +     
Sbjct: 8  PNHLIQEVLDNAVDEAIAGHCSNIKIKLHKNGV--IEVSDDGRGMPVDIHPDHKLSGVEL 65

Query: 71 -AVQRHCTSKISDD 83
             + H  +K S D
Sbjct: 66 ILCKLHAGAKFSGD 79


>gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1]
 gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1]
          Length = 591

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           +R    +  L++N+L   D  S  V+        +   + D G G+  E++P   +R   
Sbjct: 484 DRIEQVLTNLVDNALRHTDEGSVSVKVE-QEPTFAKISVQDTGHGIPQEDLPYVFERFY- 541

Query: 78  SKISDDFSNIHTFGFRGEALPSIG 101
                D +   + G  G  L  I 
Sbjct: 542 ---KADKARTRSKGGTGLGLA-IA 561


>gi|298372413|ref|ZP_06982403.1| DNA gyrase subunit B [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275317|gb|EFI16868.1| DNA gyrase subunit B [Bacteroidetes oral taxon 274 str. F0058]
          Length = 623

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 28/336 (8%)

Query: 27  IKELIENSLDA-----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS-KI 80
           IKE+I+NS+D       ++ ++  +        ++ D G G++ E +  AV    TS K 
Sbjct: 53  IKEVIDNSIDEFRNGFGAT-IDITLEDN---TVRVRDYGRGISQESMIKAVSVMNTSGKY 108

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
           +       + G  G    ++ A+S    + S       G   +   EK   V        
Sbjct: 109 TSSGYK-KSVGLNGVGTKAVNALSERFIIRSYRE----GTVKSAVFEKGVLVEETPAEAT 163

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYK 195
                 ++ F      +   +       +  +I+        ++     +  T ++    
Sbjct: 164 AEKSGTEVIFKPDNDADIFGNFAYREEFVVSMIKNYCYLNMGLTIDFNGSKMTSQNGLLD 223

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGYTGIPTFNRGNANQFYVF 253
           +  ++   +    I  + GED        N+  +     + G   I      +A + Y  
Sbjct: 224 LLDENITSDPLYPIVHLKGEDIEIVFTHTNQYGEEYYSFVNGQHTIQGGTHQSAFREYFG 283

Query: 254 INGR-TVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNP 311
            + R         + IR      I +  + PV     +I      V+ +   S       
Sbjct: 284 KSIRDFYGKNMEYADIRMGLVAAISVSLQDPVFESQTKIKLGSTKVDPNDPNSMTV---Q 340

Query: 312 TIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
             I +F+++ I + ++      + +L KK+  S  +
Sbjct: 341 KFIGDFVVKEIDRYLH-INHDVAEILQKKIQESEKE 375


>gi|255994573|ref|ZP_05427708.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
 gi|255993286|gb|EEU03375.1| DNA gyrase, B subunit [Eubacterium saphenum ATCC 49989]
          Length = 651

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I   G    ++ DNG GM  +
Sbjct: 54 VYEIVDNSIDEALAGHCNEIKICINEDG--SIRVEDNGRGMPVD 95


>gi|254284215|ref|ZP_04959183.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B]
 gi|219680418|gb|EED36767.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR51-B]
          Length = 629

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-- 74
            RP+   +E+I+NS+D   A  + +++  +   G     + DNG GM  ++ P       
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHADQIDVTLHADG--SITVVDNGRGMPVDQHPELGLPGV 86

Query: 75  -------HCTSKISD 82
                  H   K SD
Sbjct: 87  EVILSTLHAGGKFSD 101


>gi|326518120|dbj|BAK07312.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 722

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 83/247 (33%), Gaps = 22/247 (8%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---EIPMAVQR----- 74
           + E+++N++D   A  ++ +  V+     +   +TDNG G+ ++   +   +        
Sbjct: 116 VYEILDNAVDEAQAGYATEINVVLHDD--NSVSVTDNGRGIPTDIHPQTKKSCVETVLTL 173

Query: 75  -HCTSKISDDFSNIHTF----GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
            H   K      +  ++    G  G  L  + A+S    ++         Q    G+ ++
Sbjct: 174 MHAGGKFG---GSTSSYSVAGGLHGVGLSVVNALSEALEVTVCRDGKEYRQHYSRGKPLT 230

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
            +    +   +           P +  F  + + + + I+  IR +A   P+++ T +  
Sbjct: 231 MLSSTTLPDESSSRQGSCIRFWPDKEIFTTTIEFDFSTISSRIRELAFLNPELTITLTKE 290

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           + +    + +             +  D       +  +     +     +   +   ++ 
Sbjct: 291 EQDAQVQHNEYCYAGGLVEYVAWLNTDKKPLHDPIAFRKELDGIIVDVSLQWCSDSYSDT 350

Query: 250 FYVFING 256
              + N 
Sbjct: 351 VLGYANS 357


>gi|319940658|ref|ZP_08015001.1| hypothetical protein HMPREF9464_00220 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806024|gb|EFW02782.1| hypothetical protein HMPREF9464_00220 [Sutterella wadsworthensis
           3_1_45B]
          Length = 814

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 22  RPSIAIKELIENSLDAESS---RVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCT 77
           R    ++ L++N+L   +    ++   +          + DNG G+ +E++    +R   
Sbjct: 702 RLRQVLRNLLDNALKYNNKTRPKISVSVKTMNADIIVDVQDNGMGIAAEDLEKIFERFYR 761

Query: 78  S 78
           S
Sbjct: 762 S 762


>gi|296270106|ref|YP_003652738.1| signal transduction histidine kinase LytS [Thermobispora bispora
           DSM 43833]
 gi|296092893|gb|ADG88845.1| signal transduction histidine kinase, LytS [Thermobispora bispora
           DSM 43833]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 30  LIENSL------DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIP--MAVQ 73
           L+EN+L       A   R+  +    G      + D+G GM  E++   +A +
Sbjct: 287 LVENALRHGLEPKAGVGRITIIAEDAGSECRITVEDDGVGMDPEQLRRILAGE 339


>gi|206578624|ref|YP_002236552.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342]
 gi|288933535|ref|YP_003437594.1| DNA topoisomerase IV subunit beta [Klebsiella variicola At-22]
 gi|290511406|ref|ZP_06550775.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55]
 gi|206567682|gb|ACI09458.1| DNA topoisomerase IV, B subunit [Klebsiella pneumoniae 342]
 gi|288888264|gb|ADC56582.1| DNA topoisomerase IV, B subunit [Klebsiella variicola At-22]
 gi|289776399|gb|EFD84398.1| DNA topoisomerase IV, B subunit [Klebsiella sp. 1_1_55]
          Length = 631

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAKRVEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYSIAFENGEK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +       +F  S +   + +T +++  A+  P V   F
Sbjct: 148 VEDLHVTGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLTHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 204 RDQVNDSEQRWCYADGLNDYLCEAVNGL 231


>gi|149194734|ref|ZP_01871829.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2]
 gi|149135157|gb|EDM23638.1| DNA gyrase subunit B [Caminibacter mediatlanticus TB-2]
          Length = 758

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 81/213 (38%), Gaps = 23/213 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIPMA----VQRH 75
           E+++N++D   A  ++ ++  I   G     I+DNG G+       E+IP A       H
Sbjct: 40  EVVDNAIDEAMAGYATEIKVKINKDG--SVTISDNGRGIPVDIHPEEKIPAATVVLTVLH 97

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  +    + + G  G  +  + A+S   +M+         Q    G+ I+ +  + 
Sbjct: 98  AGGKFDNKTYKV-SGGLHGVGVSVVNALSKKLIMTIKRDGKIYKQEFERGKPITDLEVIG 156

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   +   +           S + +  ++   ++ +A   P ++  F   + N  +
Sbjct: 157 NTNRTGTTI-QFW----PDEEIFDSVEFKPQILQKRLKELAYLNPNITIYFEDERHNIKE 211

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
           +      G   + +  +  ++ I + +  N++ 
Sbjct: 212 VYHF--EGGIKDFVKTLTNKELITDVIYYNKQY 242


>gi|221068071|ref|ZP_03544176.1| histidine kinase [Comamonas testosteroni KF-1]
 gi|220713094|gb|EED68462.1| histidine kinase [Comamonas testosteroni KF-1]
          Length = 497

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 30  LIENSLDA--ESS----RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      +   +   GG++   + DNG GMT+       +   T+K
Sbjct: 395 LVRNALDALGQAQDAQAAISITLEQSGGEALLMVQDNGPGMTAATAERIFEPFFTTK 451


>gi|56962441|ref|YP_174167.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56908679|dbj|BAD63206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 530

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 14  IAAGEIIERPSIAIKELIENSLDA-----ESS-RVETVIAGGGKSFFQ-ITDNGFGMTSE 66
           I +  ++      I  LI+N+L+A      ++  V       G      I DNG GMT +
Sbjct: 417 IKSDHVVT----VIGNLIDNALEAAVAHQGANAHVHIAFTDFGNDMIMDIEDNGKGMTPK 472

Query: 67  EIPMAVQRHCTSK 79
           E    ++   TSK
Sbjct: 473 EEAHYLETGATSK 485


>gi|291540889|emb|CBL14000.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 345

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 31  IENSLD--AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           ++N+LD   +   +              + DNG G+  E++    +R   S+ S D   I
Sbjct: 246 VKNALDHTEKGDTIHIKWKALPSAVQITVKDNGCGIHPEDLHHIFKRFYRSRFSKDTQGI 305

Query: 88  H 88
            
Sbjct: 306 G 306


>gi|239833136|ref|ZP_04681465.1| Sensor protein chvG [Ochrobactrum intermedium LMG 3301]
 gi|239825403|gb|EEQ96971.1| Sensor protein chvG [Ochrobactrum intermedium LMG 3301]
          Length = 605

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   ++G G      + DNG G+  E I    +R 
Sbjct: 489 RLGQVVSNLIENARSFVPDDTG--RIVVTLSGEGSRLRVLVEDNGPGIPIENIERIFERF 546

Query: 76  CT 77
            T
Sbjct: 547 YT 548


>gi|153217164|ref|ZP_01950928.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae 1587]
 gi|124113807|gb|EAY32627.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae 1587]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E           +    +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEERQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|116620818|ref|YP_822974.1| zinc finger, RanBP2-type [Candidatus Solibacter usitatus
          Ellin6076]
 gi|116223980|gb|ABJ82689.1| zinc finger, RanBP2-type [Candidatus Solibacter usitatus
          Ellin6076]
          Length = 825

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 22 RPSIAIKELIENSLDAESS-----------RVETVIAGG-----GKSFFQITDNGFGMTS 65
          RP  A+ ELI+NS+D+ +S            V   +        G+    + DNG G+T 
Sbjct: 2  RPLDALCELIDNSIDSFASDGFQQKGSENNTVTVYLPKAAEVSRGRGSIAVLDNGPGLTL 61

Query: 66 EEIPMAVQRHCTSKISDDFSNIHTFGF 92
          EE   A++   +S    D   +   GF
Sbjct: 62 EEAQNALRAGFSSNNPFDRLGLFGMGF 88


>gi|7106359|ref|NP_034946.1| MORC family CW-type zinc finger protein 1 [Mus musculus]
 gi|81882085|sp|Q9WVL5|MORC1_MOUSE RecName: Full=MORC family CW-type zinc finger protein 1; AltName:
          Full=Protein microrchidia
 gi|5410255|gb|AAD43003.1|AF084945_1 microrchidia [Mus musculus]
 gi|21410299|gb|AAH30893.1| Microrchidia 1 [Mus musculus]
 gi|148665678|gb|EDK98094.1| microrchidia 1 [Mus musculus]
          Length = 950

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 12/71 (16%)

Query: 29 ELIENSLDAESSRVET-----VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++N+ DA + R++          GG     + D+G GM+ +E    +    TSK    
Sbjct: 33 ELLDNARDAGAVRLDVFSVDNETLQGGFMLCFL-DDGCGMSPDEASDVIY-FGTSK---- 86

Query: 84 FSNIHTFGFRG 94
             + T  F G
Sbjct: 87 -KRLSTLKFIG 96


>gi|119855087|ref|YP_935692.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|145225907|ref|YP_001136561.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
 gi|119697805|gb|ABL94877.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|145218370|gb|ABP47773.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
          Length = 381

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 24/91 (26%)

Query: 22  RPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           R +  I  L++N+L           DA +          G+    + DNG G+ +E +P 
Sbjct: 267 RLAQVIGNLLDNALRHTPARGRVEVDAAAK--------PGEVIITVRDNGDGIAAEHLPH 318

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
             +R        D +   + G  G  L  I 
Sbjct: 319 VFERFY----RADVARDRSHGGAGIGLA-IA 344


>gi|332861411|ref|XP_003317669.1| PREDICTED: MORC family CW-type zinc finger protein 4, partial
          [Pan troglodytes]
          Length = 572

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21 ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 14 TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 73

Query: 78 SK 79
           K
Sbjct: 74 DK 75


>gi|301774430|ref|XP_002922637.1| PREDICTED: MORC family CW-type zinc finger protein 4-like isoform
          2 [Ailuropoda melanoleuca]
          Length = 866

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21 ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 14 TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 73

Query: 78 SK 79
           K
Sbjct: 74 DK 75


>gi|301774428|ref|XP_002922636.1| PREDICTED: MORC family CW-type zinc finger protein 4-like isoform
          1 [Ailuropoda melanoleuca]
          Length = 903

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21 ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 14 TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 73

Query: 78 SK 79
           K
Sbjct: 74 DK 75


>gi|301170268|emb|CBW29873.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae 10810]
          Length = 632

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHTD--QSIEVTDNGRGMPVD 77


>gi|297304517|ref|XP_002806391.1| PREDICTED: MORC family CW-type zinc finger protein 4 isoform 2
           [Macaca mulatta]
          Length = 900

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|296236129|ref|XP_002807953.1| PREDICTED: LOW QUALITY PROTEIN: MORC family CW-type zinc finger
           protein 4-like [Callithrix jacchus]
          Length = 906

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|291407736|ref|XP_002720214.1| PREDICTED: zinc finger, CW type with coiled-coil domain 2 isoform 2
           [Oryctolagus cuniculus]
          Length = 899

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|291407734|ref|XP_002720213.1| PREDICTED: zinc finger, CW type with coiled-coil domain 2 isoform 1
           [Oryctolagus cuniculus]
          Length = 936

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|167461556|ref|ZP_02326645.1| DNA gyrase subunit B [Paenibacillus larvae subsp. larvae
          BRL-230010]
 gi|322381377|ref|ZP_08055380.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
 gi|321154953|gb|EFX47224.1| DNA gyrase subunit B-like protein [Paenibacillus larvae subsp.
          larvae B-3650]
          Length = 636

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E+++NS+D   A   ++++  I     +   + DNG G+   E P  
Sbjct: 44 EVVDNSIDEALAGFCTKIDVTIHED--NSITVIDNGRGIPVGEHPKL 88


>gi|145553971|ref|NP_001078823.1| MORC family CW-type zinc finger protein 4 isoform b [Homo sapiens]
          Length = 900

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|119633228|gb|ABL84747.1| MORC family CW-type zinc finger protein 4 [Homo sapiens]
          Length = 900

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|119623133|gb|EAX02728.1| MORC family CW-type zinc finger 4, isoform CRA_d [Homo sapiens]
          Length = 935

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|109131795|ref|XP_001093744.1| PREDICTED: MORC family CW-type zinc finger protein 4 isoform 1
           [Macaca mulatta]
          Length = 937

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|145553976|ref|NP_078933.3| MORC family CW-type zinc finger protein 4 isoform a [Homo sapiens]
 gi|73920232|sp|Q8TE76|MORC4_HUMAN RecName: Full=MORC family CW-type zinc finger protein 4; AltName:
           Full=Zinc finger CW-type coiled-coil domain protein 2
 gi|57284113|emb|CAI43049.1| MORC family CW-type zinc finger 4 [Homo sapiens]
 gi|225000030|gb|AAI72254.1| MORC family CW-type zinc finger 4 [synthetic construct]
 gi|225000926|gb|AAI72575.1| MORC family CW-type zinc finger 4 [synthetic construct]
          Length = 937

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|330444523|ref|YP_004377509.1| DNA gyrase subunit B [Chlamydophila pecorum E58]
 gi|328807633|gb|AEB41806.1| DNA gyrase, B subunit [Chlamydophila pecorum E58]
          Length = 801

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 16 AGEIIERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          AG  I      + E+I+NS+D   A   + +   I   GG     I+DNG G+  E
Sbjct: 33 AG--ISGLHHLVYEVIDNSIDEALAGYCTEINVRILEDGG---ITISDNGRGIPVE 83


>gi|312903697|ref|ZP_07762871.1| hypothetical protein HMPREF9512_01454 [Enterococcus faecalis
          TX0635]
 gi|310632889|gb|EFQ16172.1| hypothetical protein HMPREF9512_01454 [Enterococcus faecalis
          TX0635]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 29 ELIENSLDAESSRVETVIAG-------GGKSFFQITDNGFGMTSEEI 68
          EL++NS DA+++ ++               S   I DNG GMT  EI
Sbjct: 27 ELVKNSYDADATDIKIFFKNFEDNFELNDGSEIYIVDNGDGMTKNEI 73


>gi|291558319|emb|CBL35436.1| DNA gyrase subunit B [Eubacterium siraeum V10Sc8a]
          Length = 686

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++N++D   A   + +   I  G     ++TDNG G+ 
Sbjct: 71  VYEIVDNAIDEALAGYCTEINVKILPG--DVIEVTDNGRGIP 110


>gi|291531944|emb|CBK97529.1| DNA gyrase subunit B [Eubacterium siraeum 70/3]
          Length = 692

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++N++D   A   + +   I  G     ++TDNG G+ 
Sbjct: 77  VYEIVDNAIDEALAGYCTEINVKILPG--DVIEVTDNGRGIP 116


>gi|282859419|ref|ZP_06268525.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
 gi|282587817|gb|EFB93016.1| DNA gyrase, B subunit [Prevotella bivia JCVIHMP010]
          Length = 656

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A   + +E  I     +   + DNG G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCTDIEVTINED--NSITVEDNGRGIPVDEHEKL 91


>gi|257090548|ref|ZP_05584909.1| predicted protein [Enterococcus faecalis CH188]
 gi|256999360|gb|EEU85880.1| predicted protein [Enterococcus faecalis CH188]
          Length = 728

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 29 ELIENSLDAESSRVETVIAG-------GGKSFFQITDNGFGMTSEEI 68
          EL++NS DA+++ ++               S   I DNG GMT  EI
Sbjct: 31 ELVKNSYDADATDIKIFFKNFEDNFELNDGSEIYIVDNGDGMTKNEI 77


>gi|229514642|ref|ZP_04404103.1| hypothetical protein VCB_002294 [Vibrio cholerae TMA 21]
 gi|229348622|gb|EEO13580.1| hypothetical protein VCB_002294 [Vibrio cholerae TMA 21]
          Length = 675

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 568 QRLRQVLGNLVSNALDAMSETLEPKLSISAVSEEDQVIVRVSDNGCGIPPELLTTMFEPF 627

Query: 76  CTSK 79
            TSK
Sbjct: 628 QTSK 631


>gi|254524899|ref|ZP_05136954.1| two-component system sensor protein [Stenotrophomonas sp. SKA14]
 gi|219722490|gb|EED41015.1| two-component system sensor protein [Stenotrophomonas sp. SKA14]
          Length = 463

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           AIK L++N+L    D  S ++   +  GG++   I D+G G+   +     +R       
Sbjct: 362 AIKNLVDNALKYGGD-GSLQIALTVE-GGQAVLTIADHGAGIAPADAERVFERFA----- 414

Query: 82  DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGA 119
                      RGE  PS GA   L ++ R   ++ G 
Sbjct: 415 -----------RGEGAPSGGAGLGLAIVKRVVDSHGGH 441


>gi|254478916|ref|ZP_05092278.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035138|gb|EEB75850.1| DNA gyrase, B subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 654

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 28/245 (11%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 62  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 119

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVR 132
            H   K ++D   + + G  G  +  + A+S  L ++ +               K     
Sbjct: 120 LHAGGKFNNDAYKV-SGGLHGVGVSVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEV 178

Query: 133 PVAM-NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
                  GTI+  +             +    + +++   +R +A     ++      + 
Sbjct: 179 IGETEETGTIITFK-------PDKEIFEEIVFDYDILAQRLRELAFLNKGINIKLIDERD 231

Query: 192 NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFY 251
            + ++   +  G     +  +     + +   +  ++     +       +N       Y
Sbjct: 232 GKEEV--FNYEGGLIAFVKYLNRNKEVLHEEPIYMEAKNTDYEVEVC-MQYNDSYNENIY 288

Query: 252 VFING 256
            F N 
Sbjct: 289 SFANN 293


>gi|222528132|ref|YP_002572014.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621185|ref|YP_004022798.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454979|gb|ACM59241.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201652|gb|ADQ44979.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 571

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  LI N++    D    R+E  +    G     + DNG G+  E++P   +R 
Sbjct: 456 DRLEQVLINLINNAITYVQDGG--RIEVCLKKENGNIELTVEDNGPGIPKEDLPRIFERF 513

Query: 76  C 76
            
Sbjct: 514 Y 514


>gi|327535675|gb|AEA94509.1| ATP-binding protein [Enterococcus faecalis OG1RF]
          Length = 728

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 29 ELIENSLDAESSRVETVIAG-------GGKSFFQITDNGFGMTSEEI 68
          EL++NS DA+++ ++               S   I DNG GMT  EI
Sbjct: 31 ELVKNSYDADATDIKIFFKNFEDNFELNDGSEIYIVDNGDGMTKNEI 77


>gi|167751440|ref|ZP_02423567.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702]
 gi|167655686|gb|EDR99815.1| hypothetical protein EUBSIR_02436 [Eubacterium siraeum DSM 15702]
          Length = 692

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++N++D   A   + +   I  G     ++TDNG G+ 
Sbjct: 77  VYEIVDNAIDEALAGYCTEINVKILPG--DVIEVTDNGRGIP 116


>gi|167629176|ref|YP_001679675.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
 gi|167591916|gb|ABZ83664.1| DNA gyrase, b subunit [Heliobacterium modesticaldum Ice1]
          Length = 641

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R++ +I     +  ++ DNG G+  +
Sbjct: 49 VYEIVDNSIDEALAGYCNRIDVIIHDD--NSIEVIDNGRGIPVD 90


>gi|20806552|ref|NP_621723.1| DNA gyrase subunit B [Thermoanaerobacter tengcongensis MB4]
 gi|20514990|gb|AAM23327.1| DNA gyrase (topoisomerase II) B subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 654

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 28/245 (11%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 62  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 119

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVR 132
            H   K ++D   + + G  G  +  + A+S  L ++ +               K     
Sbjct: 120 LHAGGKFNNDAYKV-SGGLHGVGVSVVNALSERLEVIVKQRGKVFRQVYERGVPKTPLEV 178

Query: 133 PVAM-NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
                  GTI+  +             +    + +++   +R +A     ++      + 
Sbjct: 179 IGETEETGTIITFK-------PDKEIFEEIVFDYDILAQRLRELAFLNKGINIKLIDERD 231

Query: 192 NRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFY 251
            + ++   +  G     +  +     + +   +  ++     +       +N       Y
Sbjct: 232 GKEEV--FNYEGGLIAFVKYLNRNKEVLHEEPIYMEAKNTDYEVEVC-MQYNDSYNENIY 288

Query: 252 VFING 256
            F N 
Sbjct: 289 SFANN 293


>gi|332535200|ref|ZP_08411006.1| putative two-component system sensor histidine kinase, putative
           heat shock protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035365|gb|EGI71866.1| putative two-component system sensor histidine kinase, putative
           heat shock protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 800

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 42/102 (41%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVI----------AGGGK------------------ 51
           I  P  AI EL++NS DA++  V+  I            GGK                  
Sbjct: 19  ISGPVAAILELVKNSYDADAKEVDIKIEPGKYKKEALEHGGKITIKDDAEAKEVDIKIEP 78

Query: 52  -----------SFFQITDNGFGMTSEEIPMAVQRHCT---SK 79
                          I DNG GM+ +EI        T   SK
Sbjct: 79  GKYKKEALEYGGKIIIKDNGHGMSLDEITGIWLEPATDIKSK 120


>gi|315187334|gb|EFU21090.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6578]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 17/73 (23%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE- 67
          GE  E     + E+++NS+D   A   SR+E VI  G  +   +TD+G G+      EE 
Sbjct: 29 GE--EGLHHLVYEVVDNSIDEALAGVCSRIEVVIEPG--NVVTVTDDGRGIPVDLHPEEK 84

Query: 68 ---IPMAVQR-HC 76
             + + + R H 
Sbjct: 85 VSALELVMTRLHA 97


>gi|307719919|ref|YP_003875451.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192]
 gi|306533644|gb|ADN03178.1| DNA gyrase subunit B [Spirochaeta thermophila DSM 6192]
          Length = 635

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 17/73 (23%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE- 67
          GE  E     + E+++NS+D   A   SR+E VI  G  +   +TD+G G+      EE 
Sbjct: 29 GE--EGLHHLVYEVVDNSIDEALAGVCSRIEVVIEPG--NVVTVTDDGRGIPVDLHPEEK 84

Query: 68 ---IPMAVQR-HC 76
             + + + R H 
Sbjct: 85 VSALELVMTRLHA 97


>gi|223558011|gb|ACM91017.1| histidine kinase [uncultured bacterium URE4]
          Length = 177

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 33 NSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSE 66
          NS+ A ++ +   +           +I DNG GM  +
Sbjct: 14 NSIRAGATEITIEMEDSAARDLLSIKIIDNGCGMPED 50


>gi|147678975|ref|YP_001213190.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275072|dbj|BAF60821.1| hypothetical signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 582

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 41  RVET-----VIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           R+E       + G GK     + DNG G+  E +P       TSK
Sbjct: 490 RIEISSSLREVEGEGKKVVVTVRDNGVGIEKENLPKIFNPFYTSK 534


>gi|73697709|gb|AAZ81471.1| DNA gyrase subunit B [Acholeplasma palmae]
          Length = 588

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 12/55 (21%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  +  +   +        ++TDNG G+           H T K
Sbjct: 23 EIVDNSIDEALAGYADTITVEVLKDNI--IRVTDNGRGIP------VGIHHKTGK 69


>gi|300932508|ref|ZP_07147764.1| two-component system sensor kinase TcsS1 [Corynebacterium resistens
           DSM 45100]
          Length = 539

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+L     DA    V+  ++   +    +I D+G G+ +E++P   +R 
Sbjct: 424 RLHQVVGNLLTNALRHGGEDA---SVQINLSESQREVSIEIADDGRGIAAEDLPHLFERF 480

Query: 76  C 76
            
Sbjct: 481 Y 481


>gi|315268236|gb|ADT95089.1| hypothetical protein Sbal678_2940 [Shewanella baltica OS678]
          Length = 687

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 84/245 (34%), Gaps = 39/245 (15%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV---------- 72
           P+  + E+I N+ DA++++V   I    K    I D+G GM+ ++I              
Sbjct: 58  PA-VLTEIISNAWDADATKVAISI-DTEKGEVLIVDDGHGMSDQDIKDRFLNVGYARRDD 115

Query: 73  QRHCTSKISDDFSNIHTFGFRGE---ALPSIGAVSHLTLMSRPPQN------------NT 117
           +R   S+ + +   +   G +G    A+ S+   S + + S+                  
Sbjct: 116 KR---SRSNSNKRQV--MGRKGIGKLAMFSLA--SKIQVTSKTANGQAIAFEIDVIALQQ 168

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNF-LKSEQVETNLITDVIRRMA 176
             +     +            GT +++  L   I     +  K      ++I D      
Sbjct: 169 AIKTKQDYKAKPIKADFTEPHGTQIKLFKLKKNISRTETYLRKKLARRFSIIGDTHNFKV 228

Query: 177 IAY--PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           I    P  S     +K  ++     +TN +  +    +     I   ++   +S EI   
Sbjct: 229 IINNTPISSADRDFLKELQFLWEIGATNPDRKKECKALKESKVIGGLIDFQGQSYEIR-- 286

Query: 235 GYTGI 239
           GY G 
Sbjct: 287 GYIGS 291


>gi|299137220|ref|ZP_07030402.1| histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298600625|gb|EFI56781.1| histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 248

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 2   KIRK---LSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFF 54
           KIR    L + ++ ++  GEI++     I  LI N+LDA     +  +      G     
Sbjct: 119 KIRLVKDLPQGLVAEVYRGEILQ----VISNLIVNALDALPADGAVCIRLRKRRGEIHVI 174

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSK 79
            ++DNG G+ +E      Q   T+K
Sbjct: 175 -VSDNGHGIPTEHRDEIFQPFFTTK 198


>gi|238912420|ref|ZP_04656257.1| putative DNA mismatch repair protein [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
          Length = 663

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQR 74
          E +E P  AI EL+ N  DA +  +   I            I D+G G+   ++     R
Sbjct: 22 ESVE-PVQAILELVWNGFDAGAKNININIVYDHFDTVKNLTILDDGDGINFTDLGSNFNR 80

Query: 75 HCTSKISDDFSNIHTFGFRG 94
             S          + G RG
Sbjct: 81 FNDSLKKTSIDQHGSKG-RG 99


>gi|229917451|ref|YP_002886097.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
 gi|229468880|gb|ACQ70652.1| DNA gyrase, B subunit [Exiguobacterium sp. AT1b]
          Length = 642

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   +  G  +   + DNG G+  +
Sbjct: 48 EIVDNSIDEALAGYCDTITVTVEPG--NSIVVEDNGRGIPVD 87


>gi|56206466|emb|CAI25063.1| microrchidia 2A [Mus musculus]
          Length = 103

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|3041848|gb|AAC12954.1| Proline-rich protein; weakly similar to Q14149 (PID:g2495706) and
          A43427 (PID:g284667) [Homo sapiens]
          Length = 818

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29 ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 12 ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 70

Query: 84 FSNIHTFG 91
           + I  +G
Sbjct: 71 STQIGQYG 78


>gi|309779355|ref|ZP_07674117.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308921913|gb|EFP67548.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 438

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 19/87 (21%)

Query: 7   SEKIINQIAAGEIIER-PSIA----------IKELIENSLD---AESSRVETVIA---GG 49
              +  +I  G  +E  P+            +  L++N+L    A + RV+   A    G
Sbjct: 304 PAAVQKRIDLGIAVESQPASVMGNADALRVLLVNLVDNALKYCPAGA-RVDVSTAHTPDG 362

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           G     + DNG G+ +EE    + R  
Sbjct: 363 GAQLV-VEDNGPGIPAEERERVLDRFY 388


>gi|332652897|ref|ZP_08418642.1| ATPase [Ruminococcaceae bacterium D16]
 gi|332518043|gb|EGJ47646.1| ATPase [Ruminococcaceae bacterium D16]
          Length = 489

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 11/157 (7%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
               AI ++I+NS+ A +S V+   +      F  I D+G GMT E+I  A++    S +
Sbjct: 23  SLESAIADIIDNSIAANASNVDIQFSPYDAVPFISILDDGDGMTKEQINDAMRYGSQSSL 82

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
           +    +    G  G  L   S+     LT++++      G +I      +  +       
Sbjct: 83  N--IRDSKDLGRFGLGLKTASLSQCRCLTVITKQ-----GRRIEARRWDLDEIYEKGTWA 135

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
              +   ++   IP     LKS +  T ++ + + RM
Sbjct: 136 LLSLNSEEI-HAIPQFQTQLKSLKSGTLVLWEKLDRM 171


>gi|229526230|ref|ZP_04415634.1| hypothetical protein VCA_000345 [Vibrio cholerae bv. albensis
           VL426]
 gi|229336388|gb|EEO01406.1| hypothetical protein VCA_000345 [Vibrio cholerae bv. albensis
           VL426]
          Length = 675

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 568 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 627

Query: 76  CTSK 79
            TSK
Sbjct: 628 QTSK 631


>gi|195537257|dbj|BAG68217.1| DNA gyrase subunit B [Glaciibacter superstes]
 gi|195537259|dbj|BAG68218.1| DNA gyrase subunit B [Glaciibacter superstes]
          Length = 621

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I   G    ++ DNG G+  +
Sbjct: 15 VSEIVDNSVDEALAGYCDTIDIRILADGA--IRVEDNGRGIPVD 56


>gi|153825007|ref|ZP_01977674.1| signal transduction histidine kinase [Vibrio cholerae MZO-2]
 gi|149741332|gb|EDM55366.1| signal transduction histidine kinase [Vibrio cholerae MZO-2]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|153830711|ref|ZP_01983378.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           623-39]
 gi|148873808|gb|EDL71943.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           623-39]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|147672217|ref|YP_001215972.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           O395]
 gi|146314600|gb|ABQ19140.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           O395]
 gi|227014769|gb|ACP10978.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           O395]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|153802630|ref|ZP_01957216.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae MZO-3]
 gi|124121846|gb|EAY40589.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae MZO-3]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|229506693|ref|ZP_04396202.1| hypothetical protein VCF_001915 [Vibrio cholerae BX 330286]
 gi|229510512|ref|ZP_04399992.1| hypothetical protein VCE_001920 [Vibrio cholerae B33]
 gi|229517357|ref|ZP_04406802.1| hypothetical protein VCC_001378 [Vibrio cholerae RC9]
 gi|229605167|ref|YP_002875871.1| hypothetical protein VCD_000105 [Vibrio cholerae MJ-1236]
 gi|229345393|gb|EEO10366.1| hypothetical protein VCC_001378 [Vibrio cholerae RC9]
 gi|229352957|gb|EEO17897.1| hypothetical protein VCE_001920 [Vibrio cholerae B33]
 gi|229357044|gb|EEO21962.1| hypothetical protein VCF_001915 [Vibrio cholerae BX 330286]
 gi|229371653|gb|ACQ62075.1| hypothetical protein VCD_000105 [Vibrio cholerae MJ-1236]
          Length = 675

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 568 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 627

Query: 76  CTSK 79
            TSK
Sbjct: 628 QTSK 631


>gi|15600911|ref|NP_232541.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae O1 biovar eltor str. N16961]
 gi|121587978|ref|ZP_01677731.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae 2740-80]
 gi|121729675|ref|ZP_01682136.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae V52]
 gi|153823650|ref|ZP_01976317.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae B33]
 gi|227811767|ref|YP_002811777.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           M66-2]
 gi|254850408|ref|ZP_05239758.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MO10]
 gi|255746043|ref|ZP_05419990.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
 gi|262162119|ref|ZP_06031134.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|262167053|ref|ZP_06034769.1| signal transduction histidine kinase [Vibrio cholerae RC27]
 gi|298500001|ref|ZP_07009807.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657529|gb|AAF96054.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547776|gb|EAX57865.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae 2740-80]
 gi|121628573|gb|EAX61053.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae V52]
 gi|126518833|gb|EAZ76056.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           cholerae B33]
 gi|227010909|gb|ACP07120.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           M66-2]
 gi|254846113|gb|EET24527.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MO10]
 gi|255735797|gb|EET91195.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
 gi|262024508|gb|EEY43193.1| signal transduction histidine kinase [Vibrio cholerae RC27]
 gi|262028194|gb|EEY46852.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|297541982|gb|EFH78033.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 684

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVE----TV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA S  +E       ++   +   +++DNG G+  E +    +  
Sbjct: 577 QRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 636

Query: 76  CTSK 79
            TSK
Sbjct: 637 QTSK 640


>gi|228477165|ref|ZP_04061803.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
 gi|228251184|gb|EEK10355.1| DNA gyrase, B subunit [Streptococcus salivarius SK126]
          Length = 650

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEPD--NSITVVDDGRGIPVD 90


>gi|198245723|ref|YP_002218089.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205357423|ref|ZP_02347567.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|197940239|gb|ACH77572.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205321829|gb|EDZ09668.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 465

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TDNG G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|115381164|gb|ABI96231.1| DNA topoisomerase IV subunit B [Entomoplasma melaleucae]
          Length = 553

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 13/55 (23%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  +S ++ V+   G     +TDNG G+           H T K
Sbjct: 14 EIVDNSIDEALAGHASEIDVVLEKNG--SVTVTDNGRGVP-------TGMHATGK 59


>gi|119470529|ref|ZP_01613232.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7]
 gi|119446230|gb|EAW27507.1| DNA topoisomerase IV subunit B [Alteromonadales bacterium TW-7]
          Length = 629

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 32/218 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +++++ ++     +  +++D+G GM      EE    I 
Sbjct: 32  RPNHLGQEVIDNSVDEAMAGHATKIDVILHED--NSLEVSDDGRGMPIDIHPEEGIPGIE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           +   + H   K S+      + G  G  +  + A+S  + +  R        ++A     
Sbjct: 90  LIFTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDAQQ--YRMAFENGD 146

Query: 128 ISSVRPVAM-----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
                 V       N GT V          A  ++  S       +  +++  A+  P +
Sbjct: 147 KVEDLNVIGTVGKRNTGTTVRFW-------ADASYFDSANYSITKLNHLLKAKAVLCPGL 199

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
              F   K  +    +    G     I  V G + +  
Sbjct: 200 RIKF-VNKQTKETQEWFYETGLKDYLIEAVKGFETLPQ 236


>gi|126175769|ref|YP_001051918.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155]
 gi|160873940|ref|YP_001553256.1| DNA topoisomerase IV subunit B [Shewanella baltica OS195]
 gi|217972001|ref|YP_002356752.1| DNA topoisomerase IV subunit B [Shewanella baltica OS223]
 gi|304411164|ref|ZP_07392779.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183]
 gi|307306459|ref|ZP_07586202.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175]
 gi|125998974|gb|ABN63049.1| DNA topoisomerase IV subunit B [Shewanella baltica OS155]
 gi|160859462|gb|ABX47996.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS195]
 gi|217497136|gb|ACK45329.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS223]
 gi|304350357|gb|EFM14760.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS183]
 gi|306910750|gb|EFN41178.1| DNA topoisomerase IV, B subunit [Shewanella baltica BA175]
 gi|315266172|gb|ADT93025.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS678]
          Length = 628

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 82/212 (38%), Gaps = 29/212 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM      EE    + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHATKIEVVLHTD--NSLEVTDDGRGMPVDIHPEEGIPGVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           + + + H   K S+      + G  G  +  + A+S  + +  R      +   +     
Sbjct: 89  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFENGFKV 147

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           E++         N GT V             ++  S     + +  ++R  A+  P +  
Sbjct: 148 EELRPTGTCGRRNTGTRVHFW-------PDASYFDSANFSNSKLIYLLRAKAVLCPGLRI 200

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            F+       +++         + +   IG++
Sbjct: 201 KFTN--KQTNEVHEWFYESGLTDYLKAAIGDN 230


>gi|297159195|gb|ADI08907.1| histidine kinase [Streptomyces bingchenggensis BCW-1]
          Length = 746

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 29 ELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSE 66
          EL++N+ DA++S V          G+   ++ DNG GM+  
Sbjct: 34 ELVKNAYDADASLVLIRFNPPLEEGEGSIEVWDNGHGMSPA 74


>gi|188588850|ref|YP_001919803.1| two-component sensor histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499131|gb|ACD52267.1| two-component sensor histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 471

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 25  IAIKELIENSLD-AESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCT 77
             I  L++N++  +E + ++  +          I DNG G+  E++    +   T
Sbjct: 367 QVILNLLDNAIKYSECTEIDIYMENNEDYEIIYIIDNGQGIPKEDLKNVFENFYT 421


>gi|73661314|ref|YP_300095.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72493829|dbj|BAE17150.1| DNA gyrase subunit B [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 641

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  +E VI     ++ ++TDNG G+ 
Sbjct: 46 EIVDNSIDEALAGYADTIEVVIEKD--NWIKVTDNGRGIP 83


>gi|84386130|ref|ZP_00989159.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           splendidus 12B01]
 gi|84378900|gb|EAP95754.1| C4-dicarboxylate transport sensor protein, putative [Vibrio
           splendidus 12B01]
          Length = 687

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA--ESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA    +    VI+      +   ++ DNG G++ +++    +   
Sbjct: 579 RLRQVLGNLIRNAVDATQNQTPATIVISAHTDQQRVIIKVQDNGCGVSEDQLETIFEPFH 638

Query: 77  TSK 79
           T+K
Sbjct: 639 TNK 641


>gi|317127847|ref|YP_004094129.1| hypothetical protein Bcell_1129 [Bacillus cellulosilyticus DSM
           2522]
 gi|315472795|gb|ADU29398.1| hypothetical protein Bcell_1129 [Bacillus cellulosilyticus DSM
           2522]
          Length = 477

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT- 89
           ++NS+ A++  ++ V      + F I D+G GM+++E+  A  R  T+    D +   T 
Sbjct: 32  LDNSITAKAKNIQIVCIPNPNTVFTILDDGNGMSNDELIDA-MRLATN--DPDSTREETD 88

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQ 114
            G  G  L   S    + LT++S+   
Sbjct: 89  LGRFGLGLKTASFSQCTDLTVISKKDG 115


>gi|229824639|ref|ZP_04450708.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC
          51271]
 gi|229786010|gb|EEP22124.1| hypothetical protein GCWU000282_01986 [Catonella morbi ATCC
          51271]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
             I      + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 35 STSIVGLHHLVWEIVDNSIDEALAGYCDHIEVTIEAN--NSITVQDNGRGIPVD 86


>gi|111023581|ref|YP_706553.1| sensory histidine kinase [Rhodococcus jostii RHA1]
 gi|110823111|gb|ABG98395.1| sensory histidine kinase [Rhodococcus jostii RHA1]
          Length = 538

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 34/123 (27%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLD-------AESSRVETVI-AGGGKSFFQ 55
             L  ++     A ++I      +  LI+N++D       A   R+   I    G    +
Sbjct: 423 HALDPEL-----ATDVIT----VLGNLIDNAVDVSEGGRDA---RISIRITDDDGI-LIE 469

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           + D+G G+          R  TSK         T G RG  L        + L+S     
Sbjct: 470 VADSGPGVPESMREEIFSRGVTSK-------PGTPGGRGIGLA------LVRLVSSQHGG 516

Query: 116 NTG 118
           +  
Sbjct: 517 SAA 519


>gi|104783312|ref|YP_609810.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95112299|emb|CAK17026.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 585

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  I          + D+G G+   ++        
Sbjct: 476 RLEQVLINLLRNALDAMADKRYKRLEIRIEADASLWRLSVLDSGGGIADADLAKVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|47497337|dbj|BAD19378.1| ATP-binding region, ATPase-like domain-containing protein-like
           [Oryza sativa Japonica Group]
          Length = 331

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD--A-ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD  A  ++ V   +      G     + D+G GM  +++   +    +  SK+
Sbjct: 153 ELLDNSLDEVANGATYVNIDMLENKKDGTRMVSVEDDGGGMDPDKMWHCMSLGYSAKSKV 212

Query: 81  SDDFSNIHTFG 91
            D    I  +G
Sbjct: 213 KD---TIGQYG 220


>gi|217965929|ref|YP_002351607.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
 gi|217335199|gb|ACK40993.1| DNA gyrase, B subunit [Listeria monocytogenes HCC23]
 gi|307569529|emb|CAR82708.1| DNA gyrase, B subunit [Listeria monocytogenes L99]
          Length = 646

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|212637854|ref|YP_002314374.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
 gi|212559334|gb|ACJ32389.1| DNA gyrase subunit B [Anoxybacillus flavithermus WK1]
          Length = 640

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +  ++     +   + DNG G+ 
Sbjct: 47 EIVDNSIDEALAGFCTEINVIVEED--NSITVIDNGRGIP 84


>gi|77165746|ref|YP_344271.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707]
 gi|254433384|ref|ZP_05046892.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27]
 gi|76884060|gb|ABA58741.1| DNA topoisomerase IV subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207089717|gb|EDZ66988.1| DNA topoisomerase IV, B subunit [Nitrosococcus oceani AFC27]
          Length = 628

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 41/217 (18%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           +RP+   +E+I+NS+D   A  +++++ V+   G     + D+G GM      EE    +
Sbjct: 30  QRPNHLAQEVIDNSVDEAIAGFATQIDVVLQPDG--SLTVCDDGRGMPVDLHPEERLPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG----------EALPSIGAVSHLTLMSRPPQNNT 117
            + + R H   K S       ++ F G           AL S      L +  R      
Sbjct: 88  EVILTRLHAGGKFSS-----KSYRFAGGLHGVGVSVVNALSS-----RLEVWVRREGCEY 137

Query: 118 GAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
               A      +      +       V   +        F  + +     +  ++R  A+
Sbjct: 138 HIAFANGERVSALKAINKVGKRNTGTVLRFW----PDPVFFDTPKFAVARLKHILRAKAV 193

Query: 178 AYPK--VSFTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             P   V+F+             +       + + ++
Sbjct: 194 LCPGLCVTFSDVATGETVNWRYQEGLLAYLRDELREL 230


>gi|312863428|ref|ZP_07723666.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
 gi|322516316|ref|ZP_08069243.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          vestibularis ATCC 49124]
 gi|311100964|gb|EFQ59169.1| DNA gyrase, B subunit [Streptococcus vestibularis F0396]
 gi|322125185|gb|EFX96572.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          vestibularis ATCC 49124]
          Length = 650

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFATHIKVFIEPD--NSITVVDDGRGIPVD 90


>gi|301759519|ref|XP_002915642.1| PREDICTED: MORC family CW-type zinc finger protein 2-like
           [Ailuropoda melanoleuca]
          Length = 1178

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 177 ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 235

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 236 STQIGQYG 243


>gi|296191676|ref|XP_002743749.1| PREDICTED: MORC family CW-type zinc finger protein 2-like
           [Callithrix jacchus]
          Length = 1091

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 186 ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 244

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 245 STQIGQYG 252


>gi|262172781|ref|ZP_06040459.1| DNA gyrase subunit B [Vibrio mimicus MB-451]
 gi|261893857|gb|EEY39843.1| DNA gyrase subunit B [Vibrio mimicus MB-451]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 ETERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|258622961|ref|ZP_05717976.1| DNA gyrase, subunit B [Vibrio mimicus VM573]
 gi|258626085|ref|ZP_05720936.1| DNA gyrase, subunit B [Vibrio mimicus VM603]
 gi|258581611|gb|EEW06509.1| DNA gyrase, subunit B [Vibrio mimicus VM603]
 gi|258584744|gb|EEW09478.1| DNA gyrase, subunit B [Vibrio mimicus VM573]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 ETERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|257052540|ref|YP_003130373.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus
           utahensis DSM 12940]
 gi|256691303|gb|ACV11640.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus
           utahensis DSM 12940]
          Length = 663

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTS 65
           +++   AIKEL+EN++   D  S  V   +   G      + D+G G+  
Sbjct: 553 VDQLDRAIKELVENAVTHSDRSSPSVTVSVDTNGDIVEISVADDGPGIPE 602


>gi|223983625|ref|ZP_03633803.1| hypothetical protein HOLDEFILI_01084 [Holdemania filiformis DSM
          12042]
 gi|223964392|gb|EEF68726.1| hypothetical protein HOLDEFILI_01084 [Holdemania filiformis DSM
          12042]
          Length = 328

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  +    ++   + DNG GM  E
Sbjct: 45 EIVDNSIDEALAGYATEIEISVDP--QNIVTVEDNGRGMPVE 84


>gi|198283802|ref|YP_002220123.1| DNA topoisomerase IV subunit B [Acidithiobacillus ferrooxidans
          ATCC 53993]
 gi|218666865|ref|YP_002426433.1| DNA topoisomerase IV, subunit B [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198248323|gb|ACH83916.1| DNA topoisomerase (ATP-hydrolyzing) [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218519078|gb|ACK79664.1| DNA topoisomerase IV, subunit B [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 656

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
            P+  I+E+I+N+ D   A  ++R++  +   G     + DNG G+ 
Sbjct: 28 TCPTHVIQEVIDNAADEALAGQATRIDVTVCEDG--SVIVEDNGRGIP 73


>gi|167922014|ref|ZP_02509105.1| sensor histidine kinase [Burkholderia pseudomallei BCC215]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 405


>gi|167827363|ref|ZP_02458834.1| sensor histidine kinase [Burkholderia pseudomallei 9]
          Length = 107

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30 LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 3  LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 53


>gi|167818983|ref|ZP_02450663.1| sensor histidine kinase [Burkholderia pseudomallei 91]
          Length = 210

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 106 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 156


>gi|167741801|ref|ZP_02414575.1| sensor histidine kinase [Burkholderia pseudomallei 14]
          Length = 284

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 180 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 230


>gi|167722820|ref|ZP_02406056.1| sensor histidine kinase [Burkholderia pseudomallei DM98]
          Length = 135

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30 LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 31 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 81


>gi|149914993|ref|ZP_01903522.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. AzwK-3b]
 gi|149811181|gb|EDM71018.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. AzwK-3b]
          Length = 586

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA     ++S ++ ++A G  +   + DNG G+  E+     +   T+K
Sbjct: 484 LLRNAMDATEGTDDAS-IDILLAAGETAVLTVRDNGHGI--EDFDNLFEPFYTTK 535


>gi|134278952|ref|ZP_01765665.1| sensor histidine kinase [Burkholderia pseudomallei 305]
 gi|134249371|gb|EBA49452.1| sensor histidine kinase [Burkholderia pseudomallei 305]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 405


>gi|91762418|ref|ZP_01264383.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718220|gb|EAS84870.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1002]
          Length = 685

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 78/257 (30%), Gaps = 28/257 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP---------MAVQ 73
           + E+++NS+D   A     ++  I   G     + D+G G+  +            +  Q
Sbjct: 42  VYEVVDNSIDEALAGHCKNIDVKINSDGT--ITVRDDGRGIPVDMHKGEKMSAAEVIMTQ 99

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   D   + + G  G  +  + A+S    L +       N        G   + 
Sbjct: 100 LHAGGKFDHDSYKV-SGGLHGVGVSVVNALSEKLKLEI---DRDGNRYFIEFKDGASKAP 155

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           ++ +  +  T  ++               S +   ++I   +R +A     +  T + + 
Sbjct: 156 LKVIGKSKETGTQIT-----FLPSKEIFSSIKFTPSIIIKRMRELAFLNKGIKITVNDLN 210

Query: 191 SNRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
             + K+     +G   E +  +    + + N    +     I ++G              
Sbjct: 211 QKKEKIIVFKFDGGVLEFVDFLDEKREKLVNKTGNDLFKKPIYIEGKKDNIEIECSLKWN 270

Query: 250 FYVFINGRTVQDKFILS 266
                +     +     
Sbjct: 271 ASYGEDIYPYTNNIYQK 287


>gi|71083152|ref|YP_265871.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062265|gb|AAZ21268.1| DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
           [Candidatus Pelagibacter ubique HTCC1062]
          Length = 685

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 78/257 (30%), Gaps = 28/257 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP---------MAVQ 73
           + E+++NS+D   A     ++  I   G     + D+G G+  +            +  Q
Sbjct: 42  VYEVVDNSIDEALAGHCKNIDVKINSDGT--ITVRDDGRGIPVDMHKGEKMSAAEVIMTQ 99

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   D   + + G  G  +  + A+S    L +       N        G   + 
Sbjct: 100 LHAGGKFDHDSYKV-SGGLHGVGVSVVNALSEKLKLEI---DRDGNRYFIEFKDGASKAP 155

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           ++ +  +  T  ++               S +   ++I   +R +A     +  T + + 
Sbjct: 156 LKVIGKSKETGTQIT-----FLPSKEIFSSIKFTPSIIIKRMRELAFLNKGIKITVNDLN 210

Query: 191 SNRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
             + K+     +G   E +  +    + + N    +     I ++G              
Sbjct: 211 QKKEKIIVFKFDGGVLEFVDFLDEKREKLVNKTGNDLFKKPIYIEGKKDNIEIECSLKWN 270

Query: 250 FYVFINGRTVQDKFILS 266
                +     +     
Sbjct: 271 ASYGEDIYPYTNNIYQK 287


>gi|23978230|dbj|BAC21111.1| DNA gyrase B subunit [Anabaena variabilis]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 58/265 (21%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC-TSKIS 81
           + E+++NS+D   A   + +E  I   G     +TD+G G+  +        H  T K  
Sbjct: 10  VYEVVDNSIDEALAGYCTHIEVEINADG--SVAVTDDGRGIPIDT-------HSRTGK-- 58

Query: 82  DDFSNIHTFGFRGEALPS-------------------IG---AVSHLTLMSRPPQNNTGA 119
                + T       L +                   I    A+S +  ++         
Sbjct: 59  SALETVMTV------LHAGGKFGGGGYKVSGGLHGVGISVVNALSEVVEVTVWRDKKVHT 112

Query: 120 QIAIS---GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
           Q         ++ +        GT V  +      P    F  S + +   I+  +R +A
Sbjct: 113 QRYERGVPVTELITNPYKEARTGTSVTFK------PDTQIFTNSIEFDYITISGRLRELA 166

Query: 177 IAYPKVSFTFSTI-----KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
                V  TF+       KS+  K+      G   E I+ +  +    +   +  +    
Sbjct: 167 YLNAGVKITFTDNRLELLKSDTPKVESYEYKGGIKEYIAYMNRDKQPLHEEIIYVQGERN 226

Query: 232 TLQGYTGIPTFNRGNANQFYVFING 256
            +Q    +        +    F N 
Sbjct: 227 NVQIEVSLQWCTDAYTDNVLGFANN 251


>gi|154245229|ref|YP_001416187.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159314|gb|ABS66530.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 8   EKIINQIAAGEIIERPSIAI------------KELIENSLD--AESSRVETVIAGGGKSF 53
            ++I +  + E+I  P+  +            + LIEN+LD   E++ +   +       
Sbjct: 318 PQVIARNRSIEVIAGPAPVVVAGGRDDVFRAVRNLIENALDHTPEATTISVEVTDAPA-- 375

Query: 54  FQITDNGFGMTSE 66
            ++ D+G G  +E
Sbjct: 376 IRVRDHGPGFPAE 388


>gi|126456542|ref|YP_001074901.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242312925|ref|ZP_04811942.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|126230310|gb|ABN93723.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242136164|gb|EES22567.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 405


>gi|167848845|ref|ZP_02474353.1| sensor histidine kinase [Burkholderia pseudomallei B7210]
 gi|254189660|ref|ZP_04896169.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|157937337|gb|EDO93007.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 405


>gi|126445224|ref|YP_001061956.1| sensor histidine kinase [Burkholderia pseudomallei 668]
 gi|254193182|ref|ZP_04899617.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|126224715|gb|ABN88220.1| sensor histidine kinase [Burkholderia pseudomallei 668]
 gi|169649936|gb|EDS82629.1| sensor histidine kinase [Burkholderia pseudomallei S13]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 405


>gi|53717561|ref|YP_105536.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
 gi|53721676|ref|YP_110661.1| sensor kinase protein [Burkholderia pseudomallei K96243]
 gi|67639686|ref|ZP_00438525.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|124381820|ref|YP_001023875.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126445924|ref|YP_001078754.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|166999355|ref|ZP_02265196.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|167897443|ref|ZP_02484845.1| sensor histidine kinase [Burkholderia pseudomallei 7894]
 gi|167905798|ref|ZP_02493003.1| sensor histidine kinase [Burkholderia pseudomallei NCTC 13177]
 gi|167914105|ref|ZP_02501196.1| sensor histidine kinase [Burkholderia pseudomallei 112]
 gi|217418353|ref|ZP_03449860.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|226195270|ref|ZP_03790861.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|237508485|ref|ZP_04521200.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|254179177|ref|ZP_04885829.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254183004|ref|ZP_04889596.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|254204352|ref|ZP_04910709.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|254209236|ref|ZP_04915583.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|254264292|ref|ZP_04955157.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
 gi|254299934|ref|ZP_04967380.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|254356522|ref|ZP_04972797.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|52212090|emb|CAH38099.1| sensor kinase protein [Burkholderia pseudomallei K96243]
 gi|52423531|gb|AAU47101.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
 gi|124289840|gb|ABM99109.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126238778|gb|ABO01890.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|147744775|gb|EDK51858.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|147750459|gb|EDK57529.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|148025549|gb|EDK83672.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|157809966|gb|EDO87136.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|160694504|gb|EDP84514.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|184213537|gb|EDU10580.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|217397657|gb|EEC37672.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|225933075|gb|EEH29071.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|235000690|gb|EEP50114.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|238520279|gb|EEP83740.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|243064652|gb|EES46838.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|254215294|gb|EET04679.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 459

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 405


>gi|320354954|ref|YP_004196293.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123456|gb|ADW19002.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA-ESS-RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIENSLDA  S  +++   +   K    QI DNG G+  E +    +   T+K
Sbjct: 451 LIENSLDAVGSGGQIDITTSRSPKEVSIQIADNGPGIKPEVLAKIWEPFFTTK 503


>gi|307265850|ref|ZP_07547400.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919125|gb|EFN49349.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 457

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 27  IKELI----ENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IKELI    +N+  A+ +     +E  +     K++ +I D+G G+  E+IP    R  
Sbjct: 351 IKELIRIFLDNA--AKYTSSDGNIEIDVGKDNSKAYIKIKDDGIGIPQEDIPHIFDRFY 407


>gi|289433379|ref|YP_003463251.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
 gi|289169623|emb|CBH26157.1| DNA gyrase, B subunit [Listeria seeligeri serovar 1/2b str.
          SLCC3954]
          Length = 646

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|116871712|ref|YP_848493.1| hypothetical protein lwe0292 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740590|emb|CAK19710.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 641

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 29  ELIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSE-----EIPMAVQRHCTSKIS 81
           ELI N+ DA++  V     I    ++   + D+G GM+ E           +   T+ ++
Sbjct: 32  ELIANAYDADAKNVYVIDRIDE--ENKLIVEDDGSGMSYENKDVKNFLSVAKESRTNVVN 89

Query: 82  D--DFSNIHTFGFRGEA-LPSIGAVSH-LTLMSRPPQNNTGA--------QIAISGEKIS 129
                +N    G +G   L S+ +VS  + + +      +G         +   +  + +
Sbjct: 90  SYTKVNNRRKMGRKGVGKLASL-SVSENVNIKTIKDGEKSGFVLSRKVINKKLEAINEDT 148

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
                  N GT +E+ +  + +P  L+ + +  ++   + D   R+ +      
Sbjct: 149 INFIKIKNHGTAIEMTNPTYKLPVHLSTMANNLLKIFPLVDETFRIHLIRGDKH 202


>gi|94502204|ref|ZP_01308699.1| DNA gyrase subunit B [Oceanobacter sp. RED65]
 gi|94425665|gb|EAT10678.1| DNA gyrase subunit B [Oceanobacter sp. RED65]
          Length = 808

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 74/250 (29%), Gaps = 29/250 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +  VI         ++DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCSEIRVVIHPD--ESISVSDNGRGIPTDIHPEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L +  R           +           
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSNKLKMTIRRAGKVWEQSYTMGVPDAPLAEVG 160

Query: 135 AMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
                GT +                 +     + +   +R ++     V       +S+R
Sbjct: 161 NTETSGTTIH-------FHPSPETFTNIHFNYDHLAKRLRELSFLNSGVRIVLKDERSDR 213

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNE--KSNEITLQGYTGIPTFNRGNANQFY 251
            ++      G     +  +       N +   +    N     G      +N   +   Y
Sbjct: 214 EEV--FEFEGGLKSFVEYLNTNKTALNDIFHFQLEGDNREDGIGVEVAMQWNDSFSENIY 271

Query: 252 VFINGRTVQD 261
            F N    +D
Sbjct: 272 CFTNNIPQRD 281


>gi|53988807|gb|AAV28318.1| DNA gyrase subunit B [Listeria welshimeri]
          Length = 217

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 36 EIVDNAIDEALAGFCTEIEITIESD--NSITVRDNGRGIP 73


>gi|74008549|ref|XP_538131.2| PREDICTED: similar to MORC family CW-type zinc finger 4 (Zinc
           finger CW-type coiled-coil domain protein 2) [Canis
           familiaris]
          Length = 1021

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 134 TRPFSAIAELLDNAVDPDVSARTVFIDVEEIKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 193

Query: 78  SK 79
            K
Sbjct: 194 DK 195


>gi|302024210|ref|ZP_07249421.1| DNA gyrase subunit B [Streptococcus suis 05HAS68]
          Length = 320

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFADKIEVYIEPD--NSITVIDNGRGIPVD 90


>gi|292558800|gb|ADE31801.1| DNA gyrase, B subunit [Streptococcus suis GZ1]
          Length = 650

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFADKIEVYIEPD--NSITVIDNGRGIPVD 90


>gi|223934277|ref|ZP_03626203.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
 gi|330833155|ref|YP_004401980.1| DNA gyrase subunit B [Streptococcus suis ST3]
 gi|223897052|gb|EEF63487.1| DNA gyrase, B subunit [Streptococcus suis 89/1591]
 gi|329307378|gb|AEB81794.1| DNA gyrase subunit B [Streptococcus suis ST3]
          Length = 650

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFADKIEVYIEPD--NSITVIDNGRGIPVD 90


>gi|146319164|ref|YP_001198876.1| DNA gyrase subunit B [Streptococcus suis 05ZYH33]
 gi|253752208|ref|YP_003025349.1| DNA gyrase subunit B [Streptococcus suis SC84]
 gi|253754034|ref|YP_003027175.1| DNA gyrase subunit B [Streptococcus suis P1/7]
 gi|253755968|ref|YP_003029108.1| DNA gyrase subunit B [Streptococcus suis BM407]
 gi|145689970|gb|ABP90476.1| DNA gyrase [Streptococcus suis 05ZYH33]
 gi|226237519|dbj|BAH47268.1| DNA gyrase subunit B [Streptococcus suis]
 gi|251816497|emb|CAZ52133.1| DNA gyrase subunit B [Streptococcus suis SC84]
 gi|251818432|emb|CAZ56261.1| DNA gyrase subunit B [Streptococcus suis BM407]
 gi|251820280|emb|CAR46765.1| DNA gyrase subunit B [Streptococcus suis P1/7]
 gi|319758597|gb|ADV70539.1| DNA gyrase subunit B [Streptococcus suis JS14]
          Length = 650

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFADKIEVYIEPD--NSITVIDNGRGIPVD 90


>gi|76818432|ref|YP_337358.1| sensor kinase protein [Burkholderia pseudomallei 1710b]
 gi|76582905|gb|ABA52379.1| sensor kinase protein [Burkholderia pseudomallei 1710b]
          Length = 1093

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 30   LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            L++N++    A + RV+    I  GG    ++ DNG G+ + +     +R  
Sbjct: 989  LVDNAIRYAGAGA-RVDVDARIDAGGTPVLEVRDNGPGIPAADRERVWERFY 1039


>gi|16802054|ref|NP_463539.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
 gi|46906230|ref|YP_012619.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47093016|ref|ZP_00230795.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|47097288|ref|ZP_00234846.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498301|ref|ZP_03666650.1| DNA gyrase, B subunit [Listeria monocytogenes Finland 1988]
 gi|224503071|ref|ZP_03671378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL R2-561]
 gi|226222645|ref|YP_002756752.1| DNA gyrase subunit B [Listeria monocytogenes Clip81459]
 gi|254824774|ref|ZP_05229775.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
 gi|254827430|ref|ZP_05232117.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N3-165]
 gi|254830702|ref|ZP_05235357.1| DNA gyrase subunit B [Listeria monocytogenes 10403S]
 gi|254851836|ref|ZP_05241184.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
 gi|254899680|ref|ZP_05259604.1| DNA gyrase subunit B [Listeria monocytogenes J0161]
 gi|254913117|ref|ZP_05263129.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
 gi|254930863|ref|ZP_05264222.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
 gi|254937498|ref|ZP_05269195.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
 gi|254994017|ref|ZP_05276207.1| DNA gyrase subunit B [Listeria monocytogenes FSL J2-064]
 gi|255520064|ref|ZP_05387301.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-175]
 gi|284803260|ref|YP_003415125.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
 gi|284996401|ref|YP_003418169.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
 gi|300763380|ref|ZP_07073378.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
 gi|21328234|gb|AAM48481.1|AF084042_1 DNA gyrase subunit B [Listeria monocytogenes]
 gi|16409365|emb|CAC98221.1| DNA gyrase subunit B [Listeria monocytogenes EGD-e]
 gi|46879494|gb|AAT02796.1| DNA gyrase, B subunit [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|47014333|gb|EAL05308.1| DNA gyrase, B subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|47018584|gb|EAL09338.1| DNA gyrase, B subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875107|emb|CAS03795.1| DNA gyrase subunit B [Listeria monocytogenes serotype 4b str.
          CLIP 80459]
 gi|258599808|gb|EEW13133.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N3-165]
 gi|258605128|gb|EEW17736.1| DNA gyrase subunit B [Listeria monocytogenes FSL R2-503]
 gi|258610100|gb|EEW22708.1| DNA gyrase subunit B [Listeria monocytogenes F6900]
 gi|284058822|gb|ADB69763.1| DNA gyrase subunit B [Listeria monocytogenes 08-5578]
 gi|284061868|gb|ADB72807.1| DNA gyrase subunit B [Listeria monocytogenes 08-5923]
 gi|293582408|gb|EFF94440.1| DNA gyrase subunit B [Listeria monocytogenes HPB2262]
 gi|293591119|gb|EFF99453.1| DNA gyrase subunit B [Listeria monocytogenes J2818]
 gi|293594013|gb|EFG01774.1| DNA gyrase subunit B [Listeria monocytogenes FSL J1-194]
 gi|300515657|gb|EFK42706.1| DNA gyrase, B subunit [Listeria monocytogenes FSL N1-017]
 gi|328468327|gb|EGF39333.1| DNA gyrase subunit B [Listeria monocytogenes 1816]
 gi|332310339|gb|EGJ23434.1| DNA gyrase subunit B [Listeria monocytogenes str. Scott A]
          Length = 646

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|307719642|ref|YP_003875174.1| chaperone protein HtpG [Spirochaeta thermophila DSM 6192]
 gi|306533367|gb|ADN02901.1| chaperone protein HtpG [Spirochaeta thermophila DSM 6192]
          Length = 615

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 51/197 (25%)

Query: 19  IIERPSI----AIKELIENSLDA-----------ES-------SRVETVIAGGGKSFFQI 56
           II          ++EL+ N+ DA           E+        R++      G+S+ Q+
Sbjct: 17  IIHSLYSHREIFLRELVSNASDALDKLRFLVLTDEAYKGVPFTPRIDIRFDEEGRSYLQV 76

Query: 57  TDNGFGMTSEEI-------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGAV 103
            D G GM  +++         +      S+++ D     T       GF      S   V
Sbjct: 77  EDTGIGMNEQDLIENLGTIAKSGTSEFLSRLTGDAKKDATLIGQFGVGF-----YSAFMV 131

Query: 104 S-HLTLMSRPPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSE 161
           +  + +++R             G+    + P      GT V+     +       F    
Sbjct: 132 ADRVEVLTRKAGEEKAFLWVSDGKGEYEILPAERAGHGTTVK----LYLNEQGKEFASRW 187

Query: 162 QVETNLITDVIRRMAIA 178
                 I +++RR +  
Sbjct: 188 -----RIEEIVRRYSNH 199


>gi|94957790|gb|ABF47145.1| DNA topoisomerase IV subunit B [Entomoplasma somnilux]
          Length = 551

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ +  ++   G     ++DNG G+ 
Sbjct: 13 EIVDNSIDEALAGYATEISVILEKNG--SVTVSDNGRGVP 50


>gi|170721092|ref|YP_001748780.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida W619]
 gi|169759095|gb|ACA72411.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida W619]
          Length = 428

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ +E     GG +  ++ DNG G+  +E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAELEV-CREGGMTVIRVLDNGPGIPGDELDEVLKPFY 380


>gi|254251318|ref|ZP_04944636.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124893927|gb|EAY67807.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 667

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 547 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSAATLAVEVRDNGPGIAPDLLPRLFEPFF 606

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 607 TTK---------EMG-RGLGLGLAISSSIAS 627


>gi|283457093|ref|YP_003361656.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
 gi|283133071|dbj|BAI63836.1| type IIA topoisomerase, B subunit [Rothia mucilaginosa DY-18]
          Length = 713

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S+++  I   G    ++ D+G G+  +E P
Sbjct: 83  VYEVVDNSVDEALAGYASKIDVTIQADGA--VRVEDDGRGIPVDEHP 127


>gi|255326477|ref|ZP_05367559.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296517|gb|EET75852.1| DNA gyrase, B subunit [Rothia mucilaginosa ATCC 25296]
          Length = 678

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +S+++  I   G    ++ D+G G+  +E P
Sbjct: 48 VYEVVDNSVDEALAGYASKIDVTIQADGA--VRVEDDGRGIPVDEHP 92


>gi|239908552|ref|YP_002955294.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798419|dbj|BAH77408.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 1124

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 15/78 (19%)

Query: 19   IIERP----SIAIKELIENSLDA--------ESSRVETVI-AGGGKSFFQITDNGFGMTS 65
            ++  P    +  +  L+ N+ DA           R+E  +    G++   + DNG G+  
Sbjct: 1000 VVHGPRGEFAQVVLNLLGNAKDAILARKPVRG--RIEIRVMQRLGRAVVAVADNGGGIPP 1057

Query: 66   EEIPMAVQRHCTSKISDD 83
            + +      + T+K S D
Sbjct: 1058 DILDRIFDPYYTTKGSQD 1075


>gi|229520187|ref|ZP_04409614.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80]
 gi|229342781|gb|EEO07772.1| DNA gyrase subunit B [Vibrio cholerae TM 11079-80]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|300774354|ref|ZP_07084218.1| two component system sensor histidine kinase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506998|gb|EFK38132.1| two component system sensor histidine kinase [Chryseobacterium
           gleum ATCC 35910]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
             IK L ENS+   +S V   +    +    +++DNG G+  +E+    ++  
Sbjct: 334 TVIKNLCENSVKYGASVVAINLKSNFQHLEIEVSDNGQGIEKKELNNIFEKFY 386


>gi|153212956|ref|ZP_01948550.1| DNA gyrase, subunit B [Vibrio cholerae 1587]
 gi|124116182|gb|EAY35002.1| DNA gyrase, subunit B [Vibrio cholerae 1587]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|16799085|ref|NP_469353.1| DNA gyrase subunit B [Listeria innocua Clip11262]
 gi|16412427|emb|CAC95239.1| DNA gyrase subunit B [Listeria innocua Clip11262]
          Length = 646

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|254225547|ref|ZP_04919156.1| DNA gyrase, subunit B [Vibrio cholerae V51]
 gi|254291124|ref|ZP_04961921.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226]
 gi|125621867|gb|EAZ50192.1| DNA gyrase, subunit B [Vibrio cholerae V51]
 gi|150422969|gb|EDN14919.1| DNA gyrase, subunit B [Vibrio cholerae AM-19226]
          Length = 805

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|85708496|ref|ZP_01039562.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
 gi|85690030|gb|EAQ30033.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
          Length = 421

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 23  PSIAIKELIENSLDAES--SRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHC 76
               ++ L++N+L   S  + V   +     G +   +TD G G+  E++P   +R  
Sbjct: 283 LEQVVRNLVDNALKYGSADTSVTVRLDRSQDGMARIAVTDQGDGIAPEQLPHLTRRFY 340


>gi|255514226|gb|EET90488.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 734

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 29/141 (20%)

Query: 29  ELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCT-------- 77
           ELI+N  DA++  V+  +       K+   + D+G GM+ E I        T        
Sbjct: 31  ELIKNGYDADADEVKVSLENLKNPEKTVITVEDDGVGMSEETIRGPWLDIATGVKDKQKQ 90

Query: 78  SKISDDFSNIHTFGFRGEALPSIGAVSH---------LTLMSRPPQNNTGAQIAISGEKI 128
           SK       +   G +G        V           L ++++P  ++T     I+ +  
Sbjct: 91  SKKRTKKERLP-LGEKG--------VGRFAAQRLGRILEMITKPEGSDTEFYTKINWDDW 141

Query: 129 SSVRPVAMNPGTIVEVRDLFF 149
                   +    +E R   +
Sbjct: 142 DKEDVFVDDINIDIESRKPEY 162


>gi|319404966|emb|CBI78568.1| two-component sensor kinase BatS [Bartonella sp. AR 15-3]
          Length = 558

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 22  RPSIAIKELIENSLDAES------SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
           R    +  LIEN   A S       ++   +     +    + DNG G+ SE I    +R
Sbjct: 442 RLGQVVSNLIEN---ARSFVPRKNGKICITMKNNTSTLILTVEDNGPGIRSENIERIFER 498

Query: 75  HCT---SK 79
             T   SK
Sbjct: 499 FYTDRSSK 506


>gi|322421547|ref|YP_004200770.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           sp. M18]
 gi|320127934|gb|ADW15494.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           sp. M18]
          Length = 495

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 17  GEIIERPS---IAIKELIENSLDAES--SRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           GE+   P+    A+  LI N+L   S   ++   +     GG     + D+G GM  EE+
Sbjct: 351 GEVSVDPNLFQRAVGNLISNALHYSSPFKQIRVKLRPADNGGLE-IAVEDDGMGMAPEEL 409

Query: 69  PMAVQRHCTS 78
           P    R   S
Sbjct: 410 PRVFDRFYRS 419


>gi|225431677|ref|XP_002263942.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 736

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 26  AIKELIENSLDAESSRVETVIA-----GGGKS--FFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++NS DA+++++   I        G+      + D+G GMT +EI   V      
Sbjct: 235 AIAELVDNSRDAKATKLGISIEMIYSKKAGEDIPMLSVKDDGQGMTHKEIVRMVSFGHKQ 294

Query: 79  KISDDFSNIHTFG 91
             +DD  +I  FG
Sbjct: 295 PDTDDPDHIGRFG 307


>gi|188474273|gb|ACD49736.1| DNA gyrase subunit B [Vibrio mimicus]
          Length = 778

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 26  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 83

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 84  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLSVVG 142

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 143 ETERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIRLTDEREEDKK 197

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 198 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 256

Query: 256 GRTVQD 261
               +D
Sbjct: 257 NIPQRD 262


>gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 26  AIKELIENSLDAESSRVETVIA-----GGGKS--FFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++NS DA+++++   I        G+      + D+G GMT +EI   V      
Sbjct: 116 AIAELVDNSRDAKATKLGISIEMIYSKKAGEDIPMLSVKDDGQGMTHKEIVRMVSFGHKQ 175

Query: 79  KISDDFSNIHTFG 91
             +DD  +I  FG
Sbjct: 176 PDTDDPDHIGRFG 188


>gi|110164971|gb|ABG49484.1| MLH1-Ex6 isoform [Homo sapiens]
          Length = 56

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 97  LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS-SVRPVAMNPGTIVEV 144
           L SI  V+H+T+ ++        + + S  K+    +P A N GT + V
Sbjct: 1   LASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITV 49


>gi|148654235|ref|YP_001274440.1| DNA gyrase subunit B [Roseiflexus sp. RS-1]
 gi|148566345|gb|ABQ88490.1| DNA gyrase subunit B [Roseiflexus sp. RS-1]
          Length = 645

 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 78/252 (30%), Gaps = 27/252 (10%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV--- 72
           +      ++E+++NS+D   A  ++ VE  I   G     + D+G+G+ +   P      
Sbjct: 41  VNGLHTMVREVVDNSVDEVMAGRATTVEVTIHRDG--SVTVADDGYGIPTGPHPKLGVST 98

Query: 73  ------QRHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAI 123
                   H   K  +    + + G  G  + ++ A+S    + + +     +   +   
Sbjct: 99  LQVVMTVLHAGGKFDNKSYKVSS-GLHGVGVSAVNALSAYMRVDVHNARDGMHYFQEYRC 157

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              +    +         +               +++       +    R MA     + 
Sbjct: 158 GVPQCEVQKVGPTTRRGTIT------RFLPDTTIIQTLDYNFKTLAQRFREMAYLNKGLR 211

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
           F F   + +  ++NF    G     +  +  +  + +      +     +     +    
Sbjct: 212 FKF-VDERDGNEVNFYFEGG-IRSYVRHLNKDRNVLHKQPFYVERIVDDVMVEVALQYTE 269

Query: 244 RGNANQFYVFIN 255
             + +  Y F N
Sbjct: 270 SFDTDSVYAFAN 281


>gi|326625882|gb|EGE32227.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 534

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TDNG G+  +++      
Sbjct: 426 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTP 483

Query: 75  HCTSK 79
           + T+K
Sbjct: 484 YFTTK 488


>gi|301786220|ref|XP_002928526.1| PREDICTED: MORC family CW-type zinc finger protein 1-like
           [Ailuropoda melanoleuca]
          Length = 1067

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA ++R++   +      GG     + D+G GM+ EE    +    + K S  
Sbjct: 140 ELLDNARDAGAARLDVFSVDNEKLQGGFMLCFL-DDGCGMSPEEASDIIYFGTSKKRSST 198

Query: 84  FSNIHTFG 91
              I  +G
Sbjct: 199 LKFIGQYG 206


>gi|255013561|ref|ZP_05285687.1| hypothetical protein B2_06615 [Bacteroides sp. 2_1_7]
          Length = 177

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 33 NSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          NS+ A++S +E  I         +I DNG GM  E + +      T
Sbjct: 14 NSIRAKASDIEIDIQIKDTSICIRIADNGCGMDPETVSLIRNPFYT 59


>gi|197124334|ref|YP_002136285.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196174183|gb|ACG75156.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 679

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 30/144 (20%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQ 73
           E++     AI EL++N+ DA+++ V          GG     I+D+G GM  +       
Sbjct: 29  EVV-----AITELVKNAHDADAATVTISFRSVSTPGG--EITISDDGCGMDLDTFLSGWM 81

Query: 74  RHCTS-KISDDFSNIHTFGFR--GEALPSIGAVSH---------LTLMSRPPQNNTGAQI 121
               S K S       + G R  GE       V           L L+SR        + 
Sbjct: 82  EPAGSTKASSASKQTRS-GRRVLGE-----KGVGRFAADKLGRYLELVSRRKGQPE-VRA 134

Query: 122 AISGEKISSVRPVAMNPGTIVEVR 145
               ++      +  +     EVR
Sbjct: 135 EFDWDQFDDDGEMLSSIKNRWEVR 158


>gi|149720421|ref|XP_001494692.1| PREDICTED: similar to MORC family CW-type zinc finger protein 2
          (Zinc finger CW-type coiled-coil domain protein 1)
          [Equus caballus]
          Length = 1015

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29 ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 17 ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 75

Query: 84 FSNIHTFG 91
           + I  +G
Sbjct: 76 STQIGQYG 83


>gi|156101489|ref|XP_001616438.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805312|gb|EDL46711.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 542

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 27 IKELIENSLDA------ESSRVETVIAGGGKSF----FQITDNGFGMTSEEIPMAVQRHC 76
          +KEL +NS+DA      +   V+ +I    K          DNG G   +++    +   
Sbjct: 34 VKELFDNSIDALSSVKGKGKEVQILIREYKKELSLYEIVCRDNGEGAEIKDLEKFSEIFL 93

Query: 77 TSK 79
          TSK
Sbjct: 94 TSK 96


>gi|116871428|ref|YP_848209.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116740306|emb|CAK19424.1| DNA gyrase subunit B [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 646

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|285026530|ref|NP_001165561.1| MORC family CW-type zinc finger protein 1 [Rattus norvegicus]
 gi|109493239|ref|XP_340984.3| PREDICTED: MORC family CW-type zinc finger 1 [Rattus norvegicus]
 gi|109494309|ref|XP_001064970.1| PREDICTED: MORC family CW-type zinc finger 1 [Rattus norvegicus]
          Length = 957

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 29 ELIENSLDAESSRVET-VIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          EL++N+ DA + R++   +  G           D+G GM+ +E    +    TSK     
Sbjct: 33 ELLDNARDAGAVRLDVFSVDNGTLQGGFMLCFLDDGCGMSPDEASDIIY-FGTSK----- 86

Query: 85 SNIHTFGFRG 94
            + T  F G
Sbjct: 87 KRLSTLKFIG 96


>gi|148265645|ref|YP_001232351.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399145|gb|ABQ27778.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 492

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
               +  LI N+LDA   +           G  F  +TD G G+  E+     +   T+K
Sbjct: 383 LHQVVLNLILNALDASPQQGTIEFLAYCHDGFYFLVVTDQGSGIPPEDREKIFEIFHTTK 442


>gi|326389794|ref|ZP_08211358.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994062|gb|EGD52490.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 457

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 27  IKELI----ENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IKELI    +N+  A+ +     +E  +     K++ +I D+G G+  E+IP    R  
Sbjct: 351 IKELIRIFLDNA--AKYTSSDGNIEIDVGKDNSKAYIKIKDDGIGIPQEDIPHIFDRFY 407


>gi|28198449|ref|NP_778763.1| DNA topoisomerase IV subunit B [Xylella fastidiosa Temecula1]
 gi|182681122|ref|YP_001829282.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M23]
 gi|28056533|gb|AAO28412.1| topoisomerase IV subunit B [Xylella fastidiosa Temecula1]
 gi|182631232|gb|ACB92008.1| DNA topoisomerase IV, B subunit [Xylella fastidiosa M23]
          Length = 629

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E  +   G    ++ DNG GM      EE    +
Sbjct: 30  TRPNHLAQEVIDNSVDEALAGYANRIEVTLYKDG--SCEVADNGRGMPVDIHPEEKIPGV 87

Query: 69  PMAVQR-HCTSKISD 82
            + + R H   K S+
Sbjct: 88  ELILTRLHAGGKFSN 102


>gi|15837887|ref|NP_298575.1| DNA topoisomerase IV subunit B [Xylella fastidiosa 9a5c]
 gi|9106275|gb|AAF84095.1|AE003962_5 topoisomerase IV subunit B [Xylella fastidiosa 9a5c]
          Length = 629

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E  +   G    ++ DNG GM      EE    +
Sbjct: 30  TRPNHLAQEVIDNSVDEALAGYANRIEVTLYKDG--SCEVADNGRGMPVDIHPEEKIPGV 87

Query: 69  PMAVQR-HCTSKISD 82
            + + R H   K S+
Sbjct: 88  ELILTRLHAGGKFSN 102


>gi|71898809|ref|ZP_00680977.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa Ann-1]
 gi|71731395|gb|EAO33458.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa Ann-1]
          Length = 458

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E  +   G    ++ DNG GM      EE    +
Sbjct: 30  TRPNHLAQEVIDNSVDEALAGYANRIEVTLYKDG--SCEVADNGRGMPVDIHPEEKIPGV 87

Query: 69  PMAVQR-HCTSKISD 82
            + + R H   K S+
Sbjct: 88  ELILTRLHAGGKFSN 102


>gi|71902107|ref|ZP_00684141.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Ann-1]
 gi|71728125|gb|EAO30322.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Ann-1]
          Length = 629

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E  +   G    ++ DNG GM      EE    +
Sbjct: 30  TRPNHLAQEVIDNSVDEALAGYANRIEVTLYKDG--SCEVADNGRGMPVDIHPEEKIPGV 87

Query: 69  PMAVQR-HCTSKISD 82
            + + R H   K S+
Sbjct: 88  ELILTRLHAGGKFSN 102


>gi|71274921|ref|ZP_00651209.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Dixon]
 gi|170729813|ref|YP_001775246.1| DNA topoisomerase IV subunit B [Xylella fastidiosa M12]
 gi|71164653|gb|EAO14367.1| Gram negative topoisomerase IV, subunit B [Xylella fastidiosa
           Dixon]
 gi|167964606|gb|ACA11616.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12]
          Length = 629

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E  +   G    ++ DNG GM      EE    +
Sbjct: 30  TRPNHLAQEVIDNSVDEALAGYANRIEVTLYKDG--SCEVADNGRGMPVDIHPEEKIPGV 87

Query: 69  PMAVQR-HCTSKISD 82
            + + R H   K S+
Sbjct: 88  ELILTRLHAGGKFSN 102


>gi|118431160|ref|NP_147433.2| DNA topoisomerase VI subunit B [Aeropyrum pernix K1]
 gi|150421695|sp|Q9YE64|TOP6B_AERPE RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|116062484|dbj|BAA79682.2| type II DNA topoisomerase VI subunit B [Aeropyrum pernix K1]
          Length = 568

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 14/60 (23%)

Query: 27  IKELIENSLDA-ESS----RVETVIAG-------GGKSF--FQITDNGFGMTSEEIPMAV 72
           I+EL+ENSLDA ++      +   I         GG+      + DNG G+    + MA 
Sbjct: 57  IRELVENSLDATDAKGILPWIHISIRQIEGSEGRGGRPRYTVTVEDNGIGVPVTSMAMAF 116


>gi|6116692|dbj|BAA85765.1| DNA gyrase subunit B [Pseudomonas aeruginosa]
          Length = 807

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 74/247 (29%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCSEISITIHTD--ESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+SH L L  R             G  + + R  
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGGSAVPTARSG 160

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               G+  EV               +     +++   IR ++     V       ++ + 
Sbjct: 161 RRTDGSGTEVH-----FKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE 215

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       E    G      +N         F 
Sbjct: 216 ELFKY--EGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFT 273

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 274 NNIPQRD 280


>gi|83953708|ref|ZP_00962429.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Sulfitobacter sp. NAS-14.1]
 gi|83841653|gb|EAP80822.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Sulfitobacter sp. NAS-14.1]
          Length = 586

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 17/91 (18%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE +++ G  +   + DNG G+  E++    +  
Sbjct: 474 RIEQVLVNLLRNALDA--TKSERNPTVEIILSAGETATLTVRDNGPGI--EDLDSLFEPF 529

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
            T+K   D   +      G A+ S G VS L
Sbjct: 530 YTTKQPGDGVGL------GLAISS-GIVSDL 553


>gi|323138796|ref|ZP_08073860.1| Heat shock protein Hsp90-like [Methylocystis sp. ATCC 49242]
 gi|322395944|gb|EFX98481.1| Heat shock protein Hsp90-like [Methylocystis sp. ATCC 49242]
          Length = 639

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 29/124 (23%)

Query: 27  IKELIENSLDA------------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                   +  V   +    K    + DNG GM+ +E+
Sbjct: 48  LRELISNAADACEKLRYESLSNEKLAAMAGAPLVTISLDK-EKRTITVADNGVGMSRDEL 106

Query: 69  PMAVQRHCTS-------KI-SDDFSNIHTF-GFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
             A+     S       KI  +      +  G  G    S+  V+  + + +R    +  
Sbjct: 107 ISALGAIANSGTRAFLEKIGKEGRDAGSSLIGRFGVGFYSVFMVADNVEVATRRAGEDKA 166

Query: 119 AQIA 122
               
Sbjct: 167 WLWT 170


>gi|229528394|ref|ZP_04417785.1| hypothetical protein VCG_001479 [Vibrio cholerae 12129(1)]
 gi|229334756|gb|EEO00242.1| hypothetical protein VCG_001479 [Vibrio cholerae 12129(1)]
          Length = 672

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS- 78
               I ELI N  DA +  V   I      G     + D+G G+          R   S 
Sbjct: 29  LQSVI-ELIANGFDANAQTVHVDIEYSEMDGLVSVSVCDDGTGIDIGSCDEHFSRFYESS 87

Query: 79  -KISDDFSNIHTFG 91
            K  DD    H  G
Sbjct: 88  KKDDDDLQGAHGRG 101


>gi|147712759|gb|ABQ45883.1| mutL homolog 1 protein [Homo sapiens]
          Length = 40

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 94  GEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
           GEAL SI  V+H+T+ ++        + + S  K+
Sbjct: 1   GEALASISHVAHVTIPTKTADGKCAYRASYSDGKL 35


>gi|322389902|ref|ZP_08063442.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          parasanguinis ATCC 903]
 gi|321143338|gb|EFX38776.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          parasanguinis ATCC 903]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIEVFIEAD--NSITVVDDGRGIPVD 89


>gi|319946623|ref|ZP_08020857.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          australis ATCC 700641]
 gi|319746671|gb|EFV98930.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          australis ATCC 700641]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIEVFIEAD--NSITVVDDGRGIPVD 89


>gi|312867405|ref|ZP_07727614.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405]
 gi|311097106|gb|EFQ55341.1| DNA gyrase, B subunit [Streptococcus parasanguinis F0405]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIEVFIEAD--NSITVVDDGRGIPVD 89


>gi|296876169|ref|ZP_06900223.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          parasanguinis ATCC 15912]
 gi|296432880|gb|EFH18673.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          parasanguinis ATCC 15912]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIEVFIEAD--NSITVVDDGRGIPVD 89


>gi|190710577|gb|ACE95119.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|190710559|gb|ACE95110.1| gyrase subunit B [Bacillus thuringiensis serovar nigeriensis]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|190710557|gb|ACE95109.1| gyrase subunit B [Bacillus thuringiensis serovar londrina]
 gi|190710571|gb|ACE95116.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710573|gb|ACE95117.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710579|gb|ACE95120.1| gyrase subunit B [Bacillus thuringiensis serovar canadensis]
 gi|190710583|gb|ACE95122.1| gyrase subunit B [Bacillus thuringiensis serovar jegathesan]
 gi|190710585|gb|ACE95123.1| gyrase subunit B [Bacillus thuringiensis serovar yosoo]
 gi|190710593|gb|ACE95127.1| gyrase subunit B [Bacillus thuringiensis serovar kurstaki]
 gi|190710599|gb|ACE95130.1| gyrase subunit B [Bacillus thuringiensis serovar yunnanensis]
 gi|190710603|gb|ACE95132.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
 gi|190710607|gb|ACE95134.1| gyrase subunit B [Bacillus thuringiensis serovar kumamotoensis]
 gi|190710613|gb|ACE95137.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|190710549|gb|ACE95105.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577985|gb|ABP82711.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar thompsoni]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577965|gb|ABP82701.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus mycoides]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577967|gb|ABP82702.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus cereus]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577975|gb|ABP82706.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar entomocidus]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577977|gb|ABP82707.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar higo]
 gi|145577979|gb|ABP82708.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar kenyae]
 gi|145578009|gb|ABP82723.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar azorensis]
 gi|145578021|gb|ABP82729.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar zhaodongensis]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|92112140|ref|YP_572068.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043]
 gi|91795230|gb|ABE57369.1| DNA gyrase subunit B [Chromohalobacter salexigens DSM 3043]
          Length = 805

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S +  VI         ++DNG G+ ++
Sbjct: 43 ELVDNSIDEALAGHCSEIRVVIHPD--ESITVSDNGRGIPTD 82


>gi|19909601|dbj|BAB86996.1| DNA gyrase subunit B [Halomonas pacifica]
          Length = 378

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S +  VI         ++DNG G+ ++
Sbjct: 12 ELVDNSIDEALAGHCSEIRVVIHPD--ESITVSDNGRGIPTD 51


>gi|190710605|gb|ACE95133.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|190710595|gb|ACE95128.1| gyrase subunit B [Bacillus thuringiensis serovar pondicheriensis]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|190710575|gb|ACE95118.1| gyrase subunit B [Bacillus thuringiensis serovar kenyae]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145578005|gb|ABP82721.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar bolivia]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577997|gb|ABP82717.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar pulsiensis]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|145577995|gb|ABP82716.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar oswaldocruzi]
          Length = 631

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|68166168|gb|AAY88017.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166170|gb|AAY88018.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166172|gb|AAY88019.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166174|gb|AAY88020.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166176|gb|AAY88021.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|68166178|gb|AAY88022.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|73698012|gb|AAZ81551.1| DNA gyrase subunit B [Listeria seeligeri]
 gi|73698014|gb|AAZ81552.1| DNA gyrase subunit B [Listeria seeligeri]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 36 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 73


>gi|75812586|ref|YP_320205.1| hypothetical protein Ava_B0306 [Anabaena variabilis ATCC 29413]
 gi|75705342|gb|ABA25016.1| hypothetical protein Ava_B0306 [Anabaena variabilis ATCC 29413]
          Length = 608

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 34/131 (25%)

Query: 26  AIKELIENSLDAESSRV-------ETVIAGGGKSFF---QITDNGFGMTSEEIPMAVQRH 75
           AI EL++NS+ A ++ V       + ++     S      + DNG GM +  + +A+Q  
Sbjct: 29  AIAELMDNSIQAGATEVQLLCGEKQVLVDQRRSSRIYKLAVLDNGCGMDATVLRLALQ-- 86

Query: 76  CTSKISDDFSNIHTF---------GFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAI 123
                        T+         G  G  LPS  +VS    + + S            +
Sbjct: 87  ---------FGNGTYLDAAKHIGIGRFGMGLPS-SSVSQCQKVEVWSWQDGIENAIYTYL 136

Query: 124 SGEKISSVRPV 134
             E+I   R  
Sbjct: 137 DLEEIKQQRQT 147


>gi|145577961|gb|ABP82699.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar finitimus]
 gi|145578027|gb|ABP82732.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar poloniensis]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|94500377|ref|ZP_01306909.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65]
 gi|94427412|gb|EAT12390.1| DNA topoisomerase IV, B subunit [Oceanobacter sp. RED65]
          Length = 631

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 24/216 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   A   + +   +         +TDNG GM ++         +
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHCNHITIELFAD--QSLAVTDNGRGMPTDIHPEHGVSGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTGAQIAIS 124
            + + + H   K S+D     + G  G  +  + A+S    +T+           Q    
Sbjct: 87  ELILTKLHAGGKFSNDNYQ-FSGGLHGVGVSVVNALSKALEVTIHRNGEIMRIAFQDGEK 145

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
              +  +        T   VR           +  S +     +  V+R  A+  P ++ 
Sbjct: 146 AIDLEKIGETKRKKDTGTTVR-----FLPDAKYFDSHKFSVPRLKHVLRAKAVLCPGLTI 200

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
            F    +      +   +G          G + +  
Sbjct: 201 EFINHGNKDDNEKWFYEDGLIDYLTESTKGYETLPQ 236


>gi|237807171|ref|YP_002891611.1| DNA topoisomerase IV subunit B [Tolumonas auensis DSM 9187]
 gi|237499432|gb|ACQ92025.1| DNA topoisomerase IV, B subunit [Tolumonas auensis DSM 9187]
          Length = 630

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 23/207 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + R++ ++        ++TD+G GM      EE    + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHARRIDVILHDD--QSLEVTDDGRGMPVDIHPEEGVPAVE 88

Query: 70  MA-VQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           +   + H   K S+      + G  G  +  + A+S  + +  R   N          + 
Sbjct: 89  LIMCKLHAGGKFSNSNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGNVYEMAFEQGDKV 147

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--VSFT 185
                               +        +  S +   + +  +++  A+  P   + F 
Sbjct: 148 ADLTITGTCGKRNTGTRVKFW----PDAKYFDSPKFSASRLVHILKAKAVLCPGLTIHFE 203

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQV 212
               +                + +  V
Sbjct: 204 DRVNQQVYDWCYQDGLRDYLLDNLKDV 230


>gi|190710587|gb|ACE95124.1| gyrase subunit B [Bacillus thuringiensis serovar galleriae]
          Length = 627

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|226529982|ref|NP_001152760.1| MORC family CW-type zinc finger protein 2A isoform 1 [Mus musculus]
 gi|114150037|sp|Q69ZX6|MOR2A_MOUSE RecName: Full=MORC family CW-type zinc finger protein 2A; AltName:
           Full=Zinc finger CW-type coiled-coil domain protein 1
 gi|56206467|emb|CAI25064.1| microrchidia 2A [Mus musculus]
          Length = 1030

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|50510669|dbj|BAD32320.1| mKIAA0852 protein [Mus musculus]
          Length = 1035

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 40  ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 98

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 99  STQIGQYG 106


>gi|23978276|dbj|BAC21123.1| DNA gyrase B subunit [Pleurocapsa sp. PCC 7327]
          Length = 391

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TDNG G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEVDINSDG--SVTVTDNGRGIPTD 51


>gi|313635495|gb|EFS01732.1| DNA gyrase, B subunit [Listeria seeligeri FSL N1-067]
          Length = 528

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|300312655|ref|YP_003776747.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075440|gb|ADJ64839.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 14  IAA-----GEIIERPSIAIKELIENSLDA--ES--SRVETVIA-GGGKSFFQITDNGFGM 63
           I A     G+++ R    +  L+ N+LDA  E+   R+  V+   GG +  +I D+G G+
Sbjct: 479 IRAAACVTGDVV-RTEQVLVNLLRNALDAVEEAEHKRIAVVLEVAGGYALVRIRDSGGGI 537

Query: 64  TSEEIPMAVQRHCTSK 79
             E  P   +   T+K
Sbjct: 538 ADEVAPHLFEPFFTTK 553


>gi|297528381|ref|YP_003669656.1| DNA gyrase subunit beta [Geobacillus sp. C56-T3]
 gi|319765163|ref|YP_004130664.1| DNA gyrase B subunit [Geobacillus sp. Y412MC52]
 gi|297251633|gb|ADI25079.1| DNA gyrase, B subunit [Geobacillus sp. C56-T3]
 gi|317110029|gb|ADU92521.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC52]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKS-FFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I   GK     + DNG G+  +
Sbjct: 45 EIVDNSIDEALAGYCTNIDVTI---GKDNSITVADNGRGIPVD 84


>gi|291333528|gb|ADD93225.1| DNA topoisomerase VI B subunit [uncultured archaeon
          MedDCM-OCT-S08-C37]
          Length = 705

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 22 RPSIAIKELIENSLDA--ESS---RVETVIA--GGGKSFFQ--ITDNGFGMTSEEIPMAV 72
              A+KE ++N+LDA  E+     +   I      K   +  + DNG G+  + I    
Sbjct: 36 SLITAVKEAVDNALDACEEARILPEINVEIKKLDLKKDIIELKVEDNGPGIPQKSIEKVF 95


>gi|255003782|ref|NP_808387.2| MORC family CW-type zinc finger protein 2B [Mus musculus]
 gi|220941884|emb|CAX16071.1| microrchidia 2B [Mus musculus]
          Length = 1022

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           ELI+N+ DA+++R++          GG     + DNG GM   ++   +Q   ++K + +
Sbjct: 35  ELIDNARDADATRIDIYAEKREDLQGGFMLCFL-DNGVGMDPNDVINVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGRYG 101


>gi|261417505|ref|YP_003251187.1| DNA gyrase subunit B [Geobacillus sp. Y412MC61]
 gi|261373962|gb|ACX76705.1| DNA gyrase, B subunit [Geobacillus sp. Y412MC61]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKS-FFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I   GK     + DNG G+  +
Sbjct: 47 EIVDNSIDEALAGYCTNIDVTI---GKDNSITVADNGRGIPVD 86


>gi|111305037|gb|AAI20898.1| Morc2b protein [Mus musculus]
 gi|111309308|gb|AAI20897.1| Morc2b protein [Mus musculus]
 gi|148708323|gb|EDL40270.1| microrchidia 2B [Mus musculus]
          Length = 1022

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           ELI+N+ DA+++R++          GG     + DNG GM   ++   +Q   ++K + +
Sbjct: 35  ELIDNARDADATRIDIYAEKREDLQGGFMLCFL-DNGVGMDPNDVINVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGRYG 101


>gi|27502104|gb|AAO17388.1| TCE6 [Mus musculus]
          Length = 998

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           ELI+N+ DA+++R++          GG     + DNG GM   ++   +Q   ++K + +
Sbjct: 35  ELIDNARDADATRIDIYAEKREDLQGGFMLCFL-DNGVGMDPNDVINVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGRYG 101


>gi|56418540|ref|YP_145858.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
 gi|56378382|dbj|BAD74290.1| DNA gyrase subunit B [Geobacillus kaustophilus HTA426]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKS-FFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I   GK     + DNG G+  +
Sbjct: 45 EIVDNSIDEALAGYCTNIDVTI---GKDNSITVADNGRGIPVD 84


>gi|299144534|ref|ZP_07037613.1| putative histidine kinase [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298517622|gb|EFI41362.1| putative histidine kinase [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 385

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 25 IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           A+ EL++N+ D  +S V+       K+  +I D+G GM SE+I  
Sbjct: 27 AAVLELVKNAYDVGASVVKLEFVD--KTTLKIIDDGDGMDSEDIKK 70


>gi|228924238|ref|ZP_04087509.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228835456|gb|EEM80826.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|229051162|ref|ZP_04194706.1| DNA gyrase subunit B [Bacillus cereus AH676]
 gi|228722225|gb|EEL73626.1| DNA gyrase subunit B [Bacillus cereus AH676]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|222087597|ref|YP_002546134.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221725045|gb|ACM28201.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 459

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 30  LIENSLD----AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     A   R+E +I  G G     I+D+G G+  +E     QR  
Sbjct: 361 LLDNAIKYTPVAG--RIEVMITAGSGLWLISISDSGPGIPPDEREAVFQRFY 410


>gi|145578007|gb|ABP82722.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar finitimus]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|81914049|sp|Q8C5W4|MOR2B_MOUSE RecName: Full=MORC family CW-type zinc finger protein 2B; AltName:
           Full=TCE6
 gi|26345832|dbj|BAC36567.1| unnamed protein product [Mus musculus]
          Length = 1022

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           ELI+N+ DA+++R++          GG     + DNG GM   ++   +Q   ++K + +
Sbjct: 35  ELIDNARDADATRIDIYAEKREDLQGGFMLCFL-DNGVGMDPNDVINVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGRYG 101


>gi|206970026|ref|ZP_03230979.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
 gi|218232402|ref|YP_002364860.1| DNA gyrase subunit B [Bacillus cereus B4264]
 gi|228961757|ref|ZP_04123360.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|229072958|ref|ZP_04206154.1| DNA gyrase subunit B [Bacillus cereus F65185]
 gi|229112906|ref|ZP_04242437.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
 gi|229130739|ref|ZP_04259692.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
 gi|229153652|ref|ZP_04281828.1| DNA gyrase subunit B [Bacillus cereus m1550]
 gi|229181739|ref|ZP_04309062.1| DNA gyrase subunit B [Bacillus cereus 172560W]
 gi|229193744|ref|ZP_04320685.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
 gi|296500843|ref|YP_003662543.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
 gi|51988024|dbj|BAD44713.1| gyraseB [Bacillus cereus ATCC 14579]
 gi|206734603|gb|EDZ51772.1| DNA gyrase, B subunit [Bacillus cereus AH1134]
 gi|218160359|gb|ACK60351.1| DNA gyrase, B subunit [Bacillus cereus B4264]
 gi|228589769|gb|EEK47647.1| DNA gyrase subunit B [Bacillus cereus ATCC 10876]
 gi|228601772|gb|EEK59270.1| DNA gyrase subunit B [Bacillus cereus 172560W]
 gi|228629838|gb|EEK86491.1| DNA gyrase subunit B [Bacillus cereus m1550]
 gi|228652756|gb|EEL08641.1| DNA gyrase subunit B [Bacillus cereus BDRD-Cer4]
 gi|228670585|gb|EEL25898.1| DNA gyrase subunit B [Bacillus cereus Rock1-15]
 gi|228710204|gb|EEL62182.1| DNA gyrase subunit B [Bacillus cereus F65185]
 gi|228797951|gb|EEM44961.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pakistani
          str. T13001]
 gi|296321895|gb|ADH04823.1| DNA gyrase subunit B [Bacillus thuringiensis BMB171]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|328551706|gb|AEB22198.1| DNA gyrase subunit B [Bacillus amyloliquefaciens TA208]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 44 EIVDNSIDEALAGYCTDINIEIEKD--NSITVKDNGRGIP 81


>gi|326486754|gb|ADZ76420.1| DNA gyrase subunit B [Bacillus amyloliquefaciens]
          Length = 588

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGYCTDINIEIEKD--NSITVKDNGRGIP 51


>gi|311070653|ref|YP_003975576.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
 gi|310871170|gb|ADP34645.1| DNA gyrase subunit B [Bacillus atrophaeus 1942]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I     +   + DNG G+ 
Sbjct: 44 EIVDNSIDEALAGYCSEINIEIEKD--NSITVRDNGRGIP 81


>gi|308171897|ref|YP_003918602.1| DNA gyrase subunit B [Bacillus amyloliquefaciens DSM 7]
 gi|307604761|emb|CBI41132.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens DSM 7]
 gi|328909965|gb|AEB61561.1| DNA gyrase (subunit B) [Bacillus amyloliquefaciens LL3]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 46 EIVDNSIDEALAGYCTDINIEIEKD--NSITVKDNGRGIP 83


>gi|154684524|ref|YP_001419685.1| DNA gyrase subunit B [Bacillus amyloliquefaciens FZB42]
 gi|154350375|gb|ABS72454.1| GyrB [Bacillus amyloliquefaciens FZB42]
          Length = 638

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 44 EIVDNSIDEALAGYCTDINIEIEKD--NSITVKDNGRGIP 81


>gi|94983849|gb|ABF50629.1| DNA topoisomerase IV subunit B [Spiroplasma taiwanense]
          Length = 556

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I   G     + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGICTEINVSIEKDG--SITVKDNGRGVP 51


>gi|331011884|gb|EGH91940.1| DNA gyrase subunit B [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 805

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 79/247 (31%), Gaps = 26/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A     +  +I         + DNG G+  +          E+ M V R
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLR 101

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
               K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V
Sbjct: 102 -AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIV 159

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T  ++           +  K+     +++   IR ++     V       +S + 
Sbjct: 160 GESDTTGTQIH-----FKPSADTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       +  +     +   N         F 
Sbjct: 215 ELFKY--EGGLRAFVEYLNTNKTPVNEVFHFNIQRDDGIGVEIALQW-NDSFNENLLCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|298375679|ref|ZP_06985636.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298268179|gb|EFI09835.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 177

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 33 NSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          NS+ A++S +E  I         +I DNG GM  E + +      T
Sbjct: 14 NSIRAKASDIEIDIQIKDTSICIRIADNGCGMDPETVSLIRNPFYT 59


>gi|229148043|ref|ZP_04276382.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
 gi|228635468|gb|EEK91959.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST24]
          Length = 642

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 49 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 86


>gi|254511247|ref|ZP_05123314.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534958|gb|EEE37946.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacteraceae bacterium KLH11]
          Length = 592

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      VE ++A G ++   + DNG G+  E+I    +   T+K
Sbjct: 489 LLRNALDA--TKSVDEPDVEIILAAGDQAVLTVRDNGHGI--EDIENLFEPFYTTK 540


>gi|194043248|ref|XP_001924737.1| PREDICTED: MORC family CW-type zinc finger protein 2 [Sus scrofa]
          Length = 1022

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29 ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 24 ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 82

Query: 84 FSNIHTFG 91
           + I  +G
Sbjct: 83 STQIGQYG 90


>gi|162457275|ref|YP_001619642.1| putative two-component sensor kinase [Sorangium cellulosum 'So ce
           56']
 gi|161167857|emb|CAN99162.1| putative two-component sensor kinase [Sorangium cellulosum 'So ce
           56']
          Length = 651

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 30  LIENSLDAESSRVE----TVIAGGGKS----FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N LDA +S +       +  G          + DNG G+  + +P   + + TSK
Sbjct: 530 LVQNGLDA-ASAIRRDPRVSVTIGPLPNDRVRIVVRDNGPGVADDMVPRLFEPYATSK 586


>gi|83313399|ref|YP_423663.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Magnetospirillum magneticum AMB-1]
 gi|82948240|dbj|BAE53104.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Magnetospirillum magneticum AMB-1]
          Length = 494

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 26  AIKE-LIENSLD----AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            I E L++N++D        R+   +    G +  ++ DNG G+   E+    +RH
Sbjct: 388 VIAENLLDNAIDFSPPGG--RISMDLRQENGMALLRVRDNGPGVPEGELERIFERH 441


>gi|110637817|ref|YP_678024.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
 gi|110280498|gb|ABG58684.1| DNA gyrase subunit B [Cytophaga hutchinsonii ATCC 33406]
          Length = 652

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   +TDNG G+ 
Sbjct: 48 EVVDNSIDEALAGHCTDITVEINEN--NSITVTDNGRGIP 85


>gi|299820837|ref|ZP_07052726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
          20601]
 gi|299817858|gb|EFI85093.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Listeria grayi DSM
          20601]
          Length = 646

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   S +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCSEIEITIEED--NSITVRDNGRGIP 89


>gi|150007734|ref|YP_001302477.1| hypothetical protein BDI_1092 [Parabacteroides distasonis ATCC
          8503]
 gi|149936158|gb|ABR42855.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
          8503]
          Length = 177

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 33 NSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          NS+ A++S +E  I         +I DNG GM  E + +      T
Sbjct: 14 NSIRAKASDIEIDIQIKDTSICIRIADNGCGMDPETVSLIRNPFYT 59


>gi|114152840|sp|Q9Y6X9|MORC2_HUMAN RecName: Full=MORC family CW-type zinc finger protein 2; AltName:
           Full=Zinc finger CW-type coiled-coil domain protein 1
          Length = 1032

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|309801982|ref|ZP_07696096.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022]
 gi|308221430|gb|EFO77728.1| DNA gyrase, B subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 698

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E+P
Sbjct: 74  VYEIVDNSVDEALAGYASHIEVTILPDGG---VRVVDDGRGIPVDEVP 118


>gi|306823992|ref|ZP_07457366.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
 gi|304552990|gb|EFM40903.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
           dentium ATCC 27679]
          Length = 704

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E+P
Sbjct: 80  VYEIVDNSVDEALAGYASHIEVTILPDGG---VRVVDDGRGIPVDEVP 124


>gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 598

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           L+ N++    D   + +       GK    +TD+G G+  +++P    R        D  
Sbjct: 500 LVSNAIKYTNDNG-TIIVKTFVNDGKCHISVTDDGIGIPEKDLPFIFDRFY----RVDKG 554

Query: 86  NIHTFGFRGEALPSIG 101
              + G  G  L SI 
Sbjct: 555 RSRSLGGTGLGL-SIC 569


>gi|225352385|ref|ZP_03743408.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156892|gb|EEG70261.1| hypothetical protein BIFPSEUDO_04002 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 705

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E+P
Sbjct: 80  VYEIVDNSVDEALAGYASHIEVTILPDGG---VRVVDDGRGIPVDEVP 124


>gi|212715155|ref|ZP_03323283.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661836|gb|EEB22411.1| hypothetical protein BIFCAT_00041 [Bifidobacterium catenulatum DSM
           16992]
          Length = 705

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E+P
Sbjct: 80  VYEIVDNSVDEALAGYASHIEVTILPDGG---VRVVDDGRGIPVDEVP 124


>gi|171741730|ref|ZP_02917537.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC
           27678]
 gi|283454964|ref|YP_003359528.1| DNA gyrase [Bifidobacterium dentium Bd1]
 gi|171277344|gb|EDT45005.1| hypothetical protein BIFDEN_00821 [Bifidobacterium dentium ATCC
           27678]
 gi|283101598|gb|ADB08704.1| DNA gyrase [Bifidobacterium dentium Bd1]
          Length = 704

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E+P
Sbjct: 80  VYEIVDNSVDEALAGYASHIEVTILPDGG---VRVVDDGRGIPVDEVP 124


>gi|145577969|gb|ABP82703.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus mycoides]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|119025023|ref|YP_908868.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154486351|ref|ZP_02027758.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis
           L2-32]
 gi|118764607|dbj|BAF38786.1| DNA gyrase (topoisomerase II) B subunit [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084214|gb|EDN83259.1| hypothetical protein BIFADO_00160 [Bifidobacterium adolescentis
           L2-32]
          Length = 712

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E+P
Sbjct: 88  VYEIVDNSVDEALAGYASHIEVTILPDGG---VRVVDDGRGIPVDEVP 132


>gi|30018283|ref|NP_829914.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
 gi|228955743|ref|ZP_04117738.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
 gi|29893823|gb|AAP07115.1| DNA gyrase subunit B [Bacillus cereus ATCC 14579]
 gi|228803971|gb|EEM50595.1| DNA gyrase subunit B [Bacillus thuringiensis serovar kurstaki
          str. T03a001]
          Length = 642

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 49 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 86


>gi|30260200|ref|NP_842577.1| DNA gyrase subunit B [Bacillus anthracis str. Ames]
 gi|47525259|ref|YP_016608.1| DNA gyrase subunit B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183044|ref|YP_026296.1| DNA gyrase subunit B [Bacillus anthracis str. Sterne]
 gi|49476686|ref|YP_034365.1| DNA gyrase subunit B [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|65317473|ref|ZP_00390432.1| COG0187: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), B subunit [Bacillus anthracis str.
          A2012]
 gi|165873014|ref|ZP_02217635.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
 gi|167635023|ref|ZP_02393340.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
 gi|167641730|ref|ZP_02399973.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
 gi|170689461|ref|ZP_02880651.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
 gi|170707498|ref|ZP_02897951.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
 gi|177655278|ref|ZP_02936832.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
 gi|190569295|ref|ZP_03022189.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196036134|ref|ZP_03103534.1| DNA gyrase, B subunit [Bacillus cereus W]
 gi|196041949|ref|ZP_03109236.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
 gi|196045551|ref|ZP_03112782.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
 gi|206975909|ref|ZP_03236820.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
 gi|217957586|ref|YP_002336128.1| DNA gyrase subunit B [Bacillus cereus AH187]
 gi|218901211|ref|YP_002449045.1| DNA gyrase, B subunit [Bacillus cereus AH820]
 gi|227812683|ref|YP_002812692.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
 gi|228918105|ref|ZP_04081633.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|228930499|ref|ZP_04093499.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228931511|ref|ZP_04094421.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228949215|ref|ZP_04111483.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228988722|ref|ZP_04148807.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
          BGSC 4Y1]
 gi|229124996|ref|ZP_04254170.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
 gi|229142242|ref|ZP_04270766.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
 gi|229187722|ref|ZP_04314858.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
 gi|229603398|ref|YP_002864662.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
 gi|254687066|ref|ZP_05150924.1| DNA gyrase subunit B [Bacillus anthracis str. CNEVA-9066]
 gi|254724151|ref|ZP_05185936.1| DNA gyrase subunit B [Bacillus anthracis str. A1055]
 gi|254742123|ref|ZP_05199810.1| DNA gyrase subunit B [Bacillus anthracis str. Kruger B]
 gi|254755967|ref|ZP_05207999.1| DNA gyrase subunit B [Bacillus anthracis str. Vollum]
 gi|254761353|ref|ZP_05213375.1| DNA gyrase subunit B [Bacillus anthracis str. Australia 94]
 gi|49066055|sp|Q9X3Y6|GYRB_BACAN RecName: Full=DNA gyrase subunit B
 gi|30253521|gb|AAP24063.1| DNA gyrase, B subunit [Bacillus anthracis str. Ames]
 gi|47500407|gb|AAT29083.1| DNA gyrase, B subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176971|gb|AAT52347.1| DNA gyrase, B subunit [Bacillus anthracis str. Sterne]
 gi|49328242|gb|AAT58888.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
          [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51988026|dbj|BAD44714.1| gyraseB [Bacillus anthracis]
 gi|164711226|gb|EDR16782.1| DNA gyrase, B subunit [Bacillus anthracis str. A0488]
 gi|167510284|gb|EDR85687.1| DNA gyrase, B subunit [Bacillus anthracis str. A0193]
 gi|167529497|gb|EDR92247.1| DNA gyrase, B subunit [Bacillus anthracis str. A0442]
 gi|170127494|gb|EDS96368.1| DNA gyrase, B subunit [Bacillus anthracis str. A0389]
 gi|170666563|gb|EDT17336.1| DNA gyrase, B subunit [Bacillus anthracis str. A0465]
 gi|172080205|gb|EDT65297.1| DNA gyrase, B subunit [Bacillus anthracis str. A0174]
 gi|190559602|gb|EDV13593.1| DNA gyrase, B subunit [Bacillus anthracis Tsiankovskii-I]
 gi|195991301|gb|EDX55269.1| DNA gyrase, B subunit [Bacillus cereus W]
 gi|196023758|gb|EDX62434.1| DNA gyrase, B subunit [Bacillus cereus 03BB108]
 gi|196027204|gb|EDX65824.1| DNA gyrase, B subunit [Bacillus cereus NVH0597-99]
 gi|206746003|gb|EDZ57399.1| DNA gyrase, B subunit [Bacillus cereus H3081.97]
 gi|217063046|gb|ACJ77296.1| DNA gyrase, B subunit [Bacillus cereus AH187]
 gi|218537455|gb|ACK89853.1| DNA gyrase, B subunit [Bacillus cereus AH820]
 gi|227004428|gb|ACP14171.1| DNA gyrase, B subunit [Bacillus anthracis str. CDC 684]
 gi|228595790|gb|EEK53474.1| DNA gyrase subunit B [Bacillus cereus BGSC 6E1]
 gi|228641260|gb|EEK97567.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST26]
 gi|228658497|gb|EEL14163.1| DNA gyrase subunit B [Bacillus cereus 95/8201]
 gi|228771034|gb|EEM19515.1| DNA gyrase subunit B [Bacillus thuringiensis serovar tochigiensis
          BGSC 4Y1]
 gi|228810498|gb|EEM56851.1| DNA gyrase subunit B [Bacillus thuringiensis serovar monterrey
          BGSC 4AJ1]
 gi|228828154|gb|EEM73878.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228829218|gb|EEM74855.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228841585|gb|EEM86701.1| DNA gyrase subunit B [Bacillus thuringiensis serovar pulsiensis
          BGSC 4CC1]
 gi|229267806|gb|ACQ49443.1| DNA gyrase, B subunit [Bacillus anthracis str. A0248]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|313884315|ref|ZP_07818078.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620468|gb|EFR31894.1| DNA gyrase, B subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 639

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 79/251 (31%), Gaps = 23/251 (9%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR- 74
           I+     + E+++NS+D   A     +E  I     +   + DNG G+  +      +  
Sbjct: 37  IDGLHHLVWEIVDNSIDEALAGYCDHIEVFIEAD--NSITVIDNGRGIPVDIQSKTGRPA 94

Query: 75  --------HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
                   H   K  +D   + + G  G     + A+S HLTL         G    +  
Sbjct: 95  AETVYTVLHAGGKFGNDSYKV-SGGLHGVGAAVVNALSTHLTL----EIFREGKIHHLEF 149

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
           E+    + + +   T +    + F +P    F  +   +   + D I+ +A     +  +
Sbjct: 150 ERGLVTKELEVIGETELVGTKVNF-VPDGTIFTDTTDFKYERLKDRIQELAFLNRGLRIS 208

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
               +  R   +     G     I  +       +   +  +     +     +  +   
Sbjct: 209 LEDKREERQASDSFFYEGGLKSFIEHLNHAKKPLHEEPIFLEGEMDDIAVEIAL-QYTDS 267

Query: 246 NANQFYVFING 256
            +     F N 
Sbjct: 268 YSTNLLSFANN 278


>gi|300871637|ref|YP_003786510.1| DNA gyrase subunit B [Brachyspira pilosicoli 95/1000]
 gi|300689338|gb|ADK32009.1| DNA Gyrase B subunit [Brachyspira pilosicoli 95/1000]
          Length = 637

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 24/100 (24%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA---------VQ 73
           + E+++NS+D   A     +   I  G     ++ D+G G+  +  P            +
Sbjct: 42  VYEVVDNSIDEAMAGFCKNIIVTIKKGNI--IEVEDDGRGIPVDMHPKLKISALEVVMTK 99

Query: 74  RHCTSKISDDFSNIHTFGFRG------EALPS--IGAVSH 105
            H   K  ++   + + G  G       AL +  I  VS 
Sbjct: 100 LHAGGKFDNETYKV-SGGLHGVGVSVVNALSTELIAEVSK 138


>gi|300312043|ref|YP_003776135.1| sensory transduction histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300074828|gb|ADJ64227.1| sensory transduction histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 706

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 8/60 (13%)

Query: 15  AAG-EI---IERPSIAIKELIENSLDAES---SRVETVIAGGG-KSFFQITDNGFGMTSE 66
           A+G ++   +ER    I  L++N+L+A +    +V+  +   G ++  +I DNG GM+ +
Sbjct: 577 ASGLQVTADVERLERVIGHLVQNALEAVAPVTGQVDVRLDRVGEQALVEIIDNGHGMSEQ 636


>gi|221057450|ref|XP_002261233.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
          knowlesi strain H]
 gi|194247238|emb|CAQ40638.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
          knowlesi strain H]
          Length = 525

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 27 IKELIENSLDA------ESSRVETVIAGGGKSF----FQITDNGFGMTSEEIPMAVQRHC 76
          +KEL +NS+DA      +   V+ +I    K          DNG G   +++    +   
Sbjct: 34 VKELFDNSIDALSSVKGKGKEVQIIIREYKKELSLYEIVCRDNGEGAEIKDLEKFSEIFL 93

Query: 77 TSK 79
          TSK
Sbjct: 94 TSK 96


>gi|171061006|ref|YP_001793355.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778451|gb|ACB36590.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 600

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 21  ERPSIAIKELIENSLDAES-------SRVETVIAGG--GKSFFQITDNGFGMTSEEIPMA 71
            R    +  L+ N++DA +         +    A G  G+   ++ D+G G+ ++ +   
Sbjct: 475 TRLEQVLVNLMGNAIDAMAAAPPGSPRTLRIEAAAGAAGRCVIRVRDSGPGIRADILARL 534

Query: 72  VQRHCTSK 79
            +   TSK
Sbjct: 535 FEPFVTSK 542


>gi|145577963|gb|ABP82700.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar finitimus]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|40788387|dbj|BAA74875.2| KIAA0852 protein [Homo sapiens]
          Length = 1017

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29 ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
          EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 20 ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 78

Query: 84 FSNIHTFG 91
           + I  +G
Sbjct: 79 STQIGQYG 86


>gi|225862062|ref|YP_002747440.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
 gi|225788933|gb|ACO29150.1| DNA gyrase, B subunit [Bacillus cereus 03BB102]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|225868765|ref|YP_002744713.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
 gi|225870279|ref|YP_002746226.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047]
 gi|225699683|emb|CAW93393.1| DNA gyrase subunit B [Streptococcus equi subsp. equi 4047]
 gi|225702041|emb|CAW99644.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus]
          Length = 650

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIQVFIEAD--NSITVIDDGRGIPVD 90


>gi|195977899|ref|YP_002123143.1| DNA gyrase subunit B [Streptococcus equi subsp. zooepidemicus
          MGCS10565]
 gi|195974604|gb|ACG62130.1| DNA gyrase subunit B GyrB [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 650

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIQVFIEAD--NSITVIDDGRGIPVD 90


>gi|72160412|ref|YP_288069.1| DNA gyrase subunit B [Thermobifida fusca YX]
 gi|71914144|gb|AAZ54046.1| DNA gyrase subunit B [Thermobifida fusca YX]
          Length = 661

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  ++ +E  + A GG    ++TDNG G+  +
Sbjct: 53 VQEVVDNSVDEALAGYATAIEVTLLADGG---VRVTDNGRGIPVD 94


>gi|326405579|ref|YP_004285661.1| heat shock protein HtpG [Acidiphilium multivorum AIU301]
 gi|325052441|dbj|BAJ82779.1| heat shock protein HtpG [Acidiphilium multivorum AIU301]
          Length = 606

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 47/244 (19%)

Query: 19  IIERPSI----AIKELIENSLDA------------------ESSRVETVIAGGGKSFFQI 56
           ++          ++EL+ N+ DA                   +  +   I    ++   I
Sbjct: 22  VVHSLYSEREIFLRELVANAADATDRRRFLALSDESLALPEGA-AIRISIDKPART-ITI 79

Query: 57  TDNGFGMTSEEI-------PMAVQRHCTSKIS----DDFSN-IHTF--GFRGEALPSIGA 102
            D+G GMT+EE+         +  R  T+ ++    +D  N I  F  GF      S   
Sbjct: 80  ADDGIGMTAEELASHLGTIARSGTRAFTASLAEAKPEDRPNLIGQFGVGF-----YSAFM 134

Query: 103 VS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP-GTIV--EVRDLFFTIPARLNFL 158
           V+  + + SR    +   + +  G     +        GT +   V+         +   
Sbjct: 135 VADRVEVTSRRAGTDAAHKWSSEGTGGYRIEAATRETPGTDIVLHVKSDADEFLEPVRLE 194

Query: 159 KSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFI 218
              +   + I+  +        + +   + +   R     +    +F   +  +  E + 
Sbjct: 195 TILRKWADHISVPVEIERDGKFQKANEGTALWRRRKADIAEKDYTDFYRHLGHMFDEPWA 254

Query: 219 NNAV 222
               
Sbjct: 255 TIHW 258


>gi|300716337|ref|YP_003741140.1| Response regulator in two-component regulatory system with DcuR
           [Erwinia billingiae Eb661]
 gi|299062173|emb|CAX59289.1| Response regulator in two-component regulatory system with DcuR
           [Erwinia billingiae Eb661]
          Length = 546

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+ DA + +    V  ++    G    +++D+G G+ ++++    +   +SK
Sbjct: 444 LIENAFDALAQQPDGEVSVLLHYQNGWLSCEVSDDGPGIPADQLDAIFEHGFSSK 498


>gi|298206948|ref|YP_003715127.1| PhoR [Croceibacter atlanticus HTCC2559]
 gi|83849582|gb|EAP87450.1| PhoR [Croceibacter atlanticus HTCC2559]
          Length = 306

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           ER    +  L+ NS+     D  ++ +        K   ++TDNG G+  E IP   +R 
Sbjct: 183 ERLQQVLTNLVVNSIKYGEKD-GTTEITVEDFINNKILVRVTDNGEGIKQENIPRLFERF 241


>gi|301051746|ref|YP_003789957.1| DNA topoisomerase IV subunit B [Bacillus anthracis CI]
 gi|300373915|gb|ADK02819.1| DNA topoisomerase IV subunit B [Bacillus cereus biovar anthracis
          str. CI]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|189463672|ref|ZP_03012457.1| hypothetical protein BACINT_00003 [Bacteroides intestinalis DSM
           17393]
 gi|189438622|gb|EDV07607.1| hypothetical protein BACINT_00003 [Bacteroides intestinalis DSM
           17393]
          Length = 380

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA   +  +   +    +     + D G G+             T+K
Sbjct: 282 VIENLCKNAIDAMGGAGTLTISVQETSRFWHIDVADTGKGIDKRNFETVFAPGYTTK 338


>gi|121587244|ref|ZP_01677017.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80]
 gi|121548490|gb|EAX58546.1| DNA gyrase, subunit B [Vibrio cholerae 2740-80]
          Length = 805

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|42779086|ref|NP_976333.1| DNA gyrase subunit B [Bacillus cereus ATCC 10987]
 gi|42735001|gb|AAS38941.1| DNA gyrase, B subunit [Bacillus cereus ATCC 10987]
 gi|324323999|gb|ADY19259.1| DNA gyrase subunit B [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|330685298|gb|EGG96959.1| DNA gyrase, B subunit [Staphylococcus epidermidis VCU121]
          Length = 644

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I     ++ ++TDNG G+  +
Sbjct: 50 EIVDNSIDEALAGYADEINVTIEKD--NWIKVTDNGRGIPVD 89


>gi|326387941|ref|ZP_08209547.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207987|gb|EGD58798.1| DNA topoisomerase IV subunit B [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 670

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 18/102 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           + E+++N++D   A  ++R+E  +    G      I+DNG G+  +E P    +   S +
Sbjct: 52  VAEVLDNAMDEAVAGHANRIEITLEEEPGTPGRITISDNGRGIPVDEHPKYPGK---SAL 108

Query: 81  SDDFSNIHTFG-FRGEALPS--------IGAVSHLTLMSRPP 113
               + +H+ G F G+A  +        I  V+ L++++R  
Sbjct: 109 EVILTTLHSGGKFSGKAYATSGGLHGVGISVVNALSVLTRVE 150


>gi|323703868|ref|ZP_08115502.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531156|gb|EGB21061.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 558

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 4   RKLSEKIINQIAAG----EIIERPSIAIKELIENSLDA-----ESSRVETVI---AGGGK 51
           +KL   + + +A G    ++I         L+ N+ DA         +           K
Sbjct: 426 KKLDPSLPHIMANGHQLQQVIIN-------LLLNARDALEETSGQKSIVITTFTRKQQDK 478

Query: 52  SFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
            +   ++ DNG G+  E +        TSK
Sbjct: 479 DWVVVEVKDNGQGIAPENLQKIFNPFYTSK 508


>gi|297708623|ref|XP_002831067.1| PREDICTED: LOW QUALITY PROTEIN: MORC family CW-type zinc finger
           protein 2-like [Pongo abelii]
          Length = 1079

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDPSDAASVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|229199683|ref|ZP_04326326.1| DNA gyrase subunit B [Bacillus cereus m1293]
 gi|228583778|gb|EEK41953.1| DNA gyrase subunit B [Bacillus cereus m1293]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|118475783|ref|YP_892934.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
 gi|118415008|gb|ABK83427.1| DNA gyrase subunit B [Bacillus thuringiensis str. Al Hakam]
          Length = 645

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 52 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 89


>gi|78067683|ref|YP_370452.1| histidine kinase [Burkholderia sp. 383]
 gi|77968428|gb|ABB09808.1| histidine kinase [Burkholderia sp. 383]
          Length = 669

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +      +E  IA    +   ++ DNG+G+  + +P   +   
Sbjct: 549 RLEQVLINLLGNALDAVAGVAVPAIEVTIAVSAATLAVEVRDNGYGIAPDLLPRLFEPFF 608

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 609 TTK---------EMG-RGLGLGLAISSSIAS 629


>gi|302387483|ref|YP_003823305.1| histidine kinase [Clostridium saccharolyticum WM1]
 gi|302198111|gb|ADL05682.1| histidine kinase [Clostridium saccharolyticum WM1]
          Length = 307

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           L++N +  + +++++  +   G +   +ITDNG G+   ++P   +R
Sbjct: 210 LVQNVITHSRATQIKIEMTQEGNNIEIRITDNGIGIEKADLPHIFER 256


>gi|239637290|ref|ZP_04678277.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
 gi|239597127|gb|EEQ79637.1| DNA gyrase, B subunit [Staphylococcus warneri L37603]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I     ++ ++TDNG G+  +
Sbjct: 46 EIVDNSIDEALAGYADEINVTIEKD--NWIKVTDNGRGIPVD 85


>gi|256370829|ref|YP_003108653.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007413|gb|ACU52980.1| DNA gyrase, B subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 647

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AES-SRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A + + ++  I A GG    ++ DNG G+  +
Sbjct: 52 EVVDNAVDEVMAGACTEIDVTILADGGC---RVEDNGRGIPVD 91


>gi|222093779|ref|YP_002527826.1| DNA gyrase subunit b [Bacillus cereus Q1]
 gi|221237824|gb|ACM10534.1| DNA gyrase, B subunit [Bacillus cereus Q1]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|72162949|ref|YP_290606.1| sensor histidine kinase [Thermobifida fusca YX]
 gi|71916681|gb|AAZ56583.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Thermobifida fusca YX]
          Length = 427

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           + A  +    +  +  L+EN+    +  V    +  G     +++D G G+  + +P   
Sbjct: 312 LTAMTVPTDLAQILATLVENAFKHGAGTVTVRRVETGQSVRIEVSDEGEGIPEDLVPRIF 371

Query: 73  QRHCTS 78
           +R  TS
Sbjct: 372 EREVTS 377


>gi|256840000|ref|ZP_05545509.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262381758|ref|ZP_06074896.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310230|ref|ZP_07216169.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|256738930|gb|EEU52255.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262296935|gb|EEY84865.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831804|gb|EFK62435.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 177

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 33 NSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          NS+ A++S +E  I         +I DNG GM  E + +      T
Sbjct: 14 NSIRAKASDIEIDIQIKDTSICIRIADNGCGMDPETVSLIRNPFYT 59


>gi|188588474|ref|YP_001920237.1| anti-sigma F factor [Clostridium botulinum E3 str. Alaska E43]
 gi|226732537|sp|B2V2G9|SP2AB_CLOBA RecName: Full=Anti-sigma F factor; AltName: Full=Stage II
           sporulation protein AB
 gi|188498755|gb|ACD51891.1| anti-sigma F factor [Clostridium botulinum E3 str. Alaska E43]
          Length = 143

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSL--------DAESSRVETVIAGGGKSFF 54
           I +L    I++I+          A+ E + NS+        D    ++E  I  G  +  
Sbjct: 28  IAQLDP-TIDEIS------DVKTAVSEAVTNSIIHGYENKED-GIIKIEVEICDGEVT-I 78

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGF 92
           +ITDNG G+  E+IP  ++   TS    D       GF
Sbjct: 79  EITDNGKGI--EDIPKVMEPLYTS--RPDLER-SGMGF 111


>gi|88602689|ref|YP_502867.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
 gi|88188151|gb|ABD41148.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
          Length = 1251

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 18/91 (19%)

Query: 9    KIINQIAAGEI-IERPSIAIKEL-------------IENSL--DAESSRVETVIAGGGKS 52
             +I+ +A+ ++ IE     + E+             +E +L  D   SR+   +   G++
Sbjct: 1122 TLIHALASHQVVIENTVSPVLEIYADPMMRNVFMIILEYALKKDRGVSRLRISVTMSGRT 1181

Query: 53   FFQI-TDNGFGMTSEEIPMAVQRHCTSKISD 82
               I  DNG G+ ++E  +    H  SK SD
Sbjct: 1182 LILICEDNGAGIPADEKEIIFM-HGNSKYSD 1211


>gi|288555205|ref|YP_003427140.1| PAS two-component sensor histidine kinase [Bacillus pseudofirmus
           OF4]
 gi|288546365|gb|ADC50248.1| PAS two-component sensor histidine kinase [Bacillus pseudofirmus
           OF4]
          Length = 541

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++AE+  +   I     S   +I DNG G++ E I    +   + K
Sbjct: 448 LLKNAIEAEAKNICIHIKKQDDSIIVRIADNGQGISEERIKKLGEPFYSEK 498


>gi|228995401|ref|ZP_04155073.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
 gi|229003015|ref|ZP_04160874.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
 gi|228758243|gb|EEM07429.1| DNA gyrase subunit B [Bacillus mycoides Rock1-4]
 gi|228764354|gb|EEM13229.1| DNA gyrase subunit B [Bacillus mycoides Rock3-17]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|325299173|ref|YP_004259090.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
 gi|324318726|gb|ADY36617.1| DNA gyrase, B subunit [Bacteroides salanitronis DSM 18170]
          Length = 654

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 88


>gi|315222422|ref|ZP_07864326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Streptococcus anginosus F0211]
 gi|315188507|gb|EFU22218.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Streptococcus anginosus F0211]
          Length = 797

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 20/73 (27%)

Query: 25 IAIKELIENSLDAESSRVETVIAGGGK--------SFFQITDNGFGMTSEEIPMAVQRHC 76
           AI EL++NS DA S++V   I G           +  +I D+G GM+ +          
Sbjct: 30 SAILELVKNSYDAFSNQVNIRIDGETIGKGKDKKATSIEIIDDGQGMSLD---------- 79

Query: 77 TSKISDDFSNIHT 89
            KI D F  + T
Sbjct: 80 --KIIDVFFTLGT 90


>gi|240850782|ref|YP_002972182.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup]
 gi|240267905|gb|ACS51493.1| DNA topoisomerase IV subunit B [Bartonella grahamii as4aup]
          Length = 688

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  +E  +   G  +  +TDNG G+  E  P
Sbjct: 85  EIIDNAMDEAVAGYADFIEVSLDRNG--YITVTDNGRGIPVENHP 127


>gi|224024595|ref|ZP_03642961.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
          18228]
 gi|224017817|gb|EEF75829.1| hypothetical protein BACCOPRO_01321 [Bacteroides coprophilus DSM
          18228]
          Length = 656

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 88


>gi|198274299|ref|ZP_03206831.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM
          17135]
 gi|198272789|gb|EDY97058.1| hypothetical protein BACPLE_00442 [Bacteroides plebeius DSM
          17135]
          Length = 654

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 88


>gi|189462935|ref|ZP_03011720.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM
          17136]
 gi|189430362|gb|EDU99346.1| hypothetical protein BACCOP_03637 [Bacteroides coprocola DSM
          17136]
          Length = 654

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 88


>gi|115446095|ref|NP_001046827.1| Os02g0469300 [Oryza sativa Japonica Group]
 gi|47497336|dbj|BAD19377.1| ATP-binding region, ATPase-like domain-containing protein-like
           [Oryza sativa Japonica Group]
 gi|113536358|dbj|BAF08741.1| Os02g0469300 [Oryza sativa Japonica Group]
 gi|215697210|dbj|BAG91204.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 803

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD--A-ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD  A  ++ V   +      G     + D+G GM  +++   +    +  SK+
Sbjct: 153 ELLDNSLDEVANGATYVNIDMLENKKDGTRMVSVEDDGGGMDPDKMWHCMSLGYSAKSKV 212

Query: 81  SDDFSNIHTFG 91
            D    I  +G
Sbjct: 213 KD---TIGQYG 220


>gi|326520115|dbj|BAK03982.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 656

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 23  PSIAIKELIENSLD---AESSRVETV--I-AGGGKSFFQITDNGFGMTSEEIPMA 71
           P  A+ EL++N++D     ++R+     I    G     + D+G GM  + +   
Sbjct: 135 PFGAVAELLDNAVDEIKTGATRIVVDKIINKRNGSPALLVHDDGGGMDPDSMRRC 189


>gi|298711438|emb|CBJ32578.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 27  IKELIENSLDA---ES-SRVETVIAGGGKS--FFQITDNGFGMTSEEIP 69
           + ELI+NS+ A    +  +VE  +   GKS  F  + DNG GM ++ + 
Sbjct: 123 VAELIDNSIQATRGNAERKVEVEVVLNGKSTSFLVVRDNGCGMHAKGLE 171


>gi|228994212|ref|ZP_04154112.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
 gi|228765664|gb|EEM14318.1| DNA gyrase subunit B [Bacillus pseudomycoides DSM 12442]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|229035151|ref|ZP_04189097.1| DNA gyrase subunit B [Bacillus cereus AH1271]
 gi|228728217|gb|EEL79247.1| DNA gyrase subunit B [Bacillus cereus AH1271]
          Length = 640

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 84


>gi|297567023|ref|YP_003685995.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296851472|gb|ADH64487.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +ER       ++ N+  A++S +  V     +    ++ DNG G+  E +P   +R  
Sbjct: 360 VERLHQVFANMVSNAQKAQASEIRLVARDLQERVVIRVEDNGEGIPPEHLPHLFERFY 417


>gi|222622834|gb|EEE56966.1| hypothetical protein OsJ_06680 [Oryza sativa Japonica Group]
          Length = 812

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD--A-ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD  A  ++ V   +      G     + D+G GM  +++   +    +  SK+
Sbjct: 153 ELLDNSLDEVANGATYVNIDMLENKKDGTRMVSVEDDGGGMDPDKMWHCMSLGYSAKSKV 212

Query: 81  SDDFSNIHTFG 91
            D    I  +G
Sbjct: 213 KD---TIGQYG 220


>gi|19909599|dbj|BAB86995.1| DNA gyrase subunit B [Halomonas halmophila]
          Length = 378

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S +  +I         ++DNG G+ ++
Sbjct: 12 ELVDNSIDEALAGYCSEIRVIIHPD--ESITVSDNGRGIPTD 51


>gi|229844202|ref|ZP_04464343.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1]
 gi|229847154|ref|ZP_04467259.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1]
 gi|229809983|gb|EEP45704.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 7P49H1]
 gi|229813196|gb|EEP48884.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 6P18H1]
 gi|309973201|gb|ADO96402.1| DNA topoisomerase IV, subunit B [Haemophilus influenzae R2846]
          Length = 632

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKIEVILHPD--QSIKVTDNGRGMPVD 77


>gi|326942563|gb|AEA18459.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 406

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVKDG--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|325295082|ref|YP_004281596.1| multi-sensor signal transduction histidine kinase
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065530|gb|ADY73537.1| multi-sensor signal transduction histidine kinase
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 649

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 20  IERPSIAIKE----LIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           I+R    ++E    L++NS++A +++V     +  GK F    DNG G++ E        
Sbjct: 551 IDR--SLLREVFTNLVDNSIEAGATKVNVSTTSKDGKVFVVFQDNGPGISEEIADKLFAP 608

Query: 75  HCTSK 79
           + ++K
Sbjct: 609 YVSTK 613


>gi|323343328|ref|ZP_08083555.1| sensor histidine kinase [Prevotella oralis ATCC 33269]
 gi|323095147|gb|EFZ37721.1| sensor histidine kinase [Prevotella oralis ATCC 33269]
          Length = 388

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 17/86 (19%)

Query: 3   IRKLSE-KIINQIAAGE---IIERPSIAIKELIENSLDA----ESSRVETVIAGG-GKSF 53
           I+ L +  ++ ++ A     +IE  S       +N++DA      + +   +     K+ 
Sbjct: 269 IKDLPDHDVVIKLNASLFEWVIENLS-------KNAVDAMGGEGGT-ITLRVEDAKDKAV 320

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++TD G G+  +++    +   T+K
Sbjct: 321 VEVTDTGKGIRKKDLRNVFRPGFTTK 346


>gi|254705095|ref|ZP_05166923.1| sensor protein chvG [Brucella suis bv. 3 str. 686]
          Length = 589

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 473 RFGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 530

Query: 76  CT 77
            T
Sbjct: 531 YT 532


>gi|237784642|ref|YP_002905347.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757554|gb|ACR16804.1| DNA gyrase subunit B [Corynebacterium kroppenstedtii DSM 44385]
          Length = 682

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT----SEEIPMA----VQRH 75
           E+++NS+D   A  ++ V+  I   GG    ++ D+G G+         P       Q H
Sbjct: 50  EVVDNSVDEAMAGYATHVDVTIMKDGG---IEVVDDGRGIPVSMHPSGAPTVQVVMTQLH 106

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN--NTGAQIAISGEKISSVRP 133
              K  +D   + + G  G  +  + A+S     +R        G +   +         
Sbjct: 107 AGGKFDNDSYAV-SGGLHGVGISVVNALS-----TRVEAEIKRDGYRWYQNFTDAIPDEL 160

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
           V             F+  P   +  ++ + +   I   ++ MA     +  T +
Sbjct: 161 VQGKKARGTGTTIRFWPDP---DVFETTEFKFETIARRLQEMAFLNKGLYITLT 211


>gi|228910630|ref|ZP_04074442.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228849045|gb|EEM93887.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
          Length = 392

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 300 LIKNAIEAMSVGGTITIKVTVKDG--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 351


>gi|228923531|ref|ZP_04086812.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836108|gb|EEM81468.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 392

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 300 LIKNAIEAMSVGGTITIKVTVKDG--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 351


>gi|256824698|ref|YP_003148658.1| signal transduction histidine kinase [Kytococcus sedentarius DSM
           20547]
 gi|256688091|gb|ACV05893.1| signal transduction histidine kinase [Kytococcus sedentarius DSM
           20547]
          Length = 345

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 13/90 (14%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHCTSKIS 81
            S  +  LIENSL      +   I   G S   + +D G G+  E      +RH TS   
Sbjct: 244 LSQVLSTLIENSLTYGEGIITLRIEDNGPSVQLVLSDEGPGIAPEIADRIFERHVTS--- 300

Query: 82  DDFSNIHTFGFRGEALPS--IGAV-SHLTL 108
                  T G RG AL    I AV   L L
Sbjct: 301 ----GAGT-G-RGLALARQIITAVGGRLEL 324


>gi|218263012|ref|ZP_03477264.1| hypothetical protein PRABACTJOHN_02945 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223010|gb|EEC95660.1| hypothetical protein PRABACTJOHN_02945 [Parabacteroides johnsonii
           DSM 18315]
          Length = 444

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 14/87 (16%)

Query: 2   KIRKLSEKIINQIAAGEIIER---PSIAIKELIENSLDA--ESSRVETVIAGG----GKS 52
           KI+ +     +     ++I         +  L++N+LDA     R +  ++ G    GK+
Sbjct: 320 KIKIIP-ATAHL----QVIADKGLIEQVLINLVKNALDATRHCLRPQIELSAGINEEGKT 374

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           F +++DNG G+  E          T+K
Sbjct: 375 FIRVSDNGTGIPVEVQERIFIPFFTTK 401


>gi|163844110|ref|YP_001628514.1| sensor protein chvG [Brucella suis ATCC 23445]
 gi|163674833|gb|ABY38944.1| Sensor protein chvG [Brucella suis ATCC 23445]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RFGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|161620005|ref|YP_001593892.1| sensor protein chvG [Brucella canis ATCC 23365]
 gi|260567437|ref|ZP_05837907.1| BvrS protein [Brucella suis bv. 4 str. 40]
 gi|261755798|ref|ZP_05999507.1| sensory protein BvrS [Brucella suis bv. 3 str. 686]
 gi|161336816|gb|ABX63121.1| Sensor protein chvG [Brucella canis ATCC 23365]
 gi|260156955|gb|EEW92035.1| BvrS protein [Brucella suis bv. 4 str. 40]
 gi|261745551|gb|EEY33477.1| sensory protein BvrS [Brucella suis bv. 3 str. 686]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RFGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|195952393|ref|YP_002120683.1| integral membrane sensor signal transduction histidine kinase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932005|gb|ACG56705.1| integral membrane sensor signal transduction histidine kinase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 598

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+NS++++S++++  I           DNG G+  +EI      + +SK
Sbjct: 516 LIQNSIESKSTKIKIEIKP---KEIIYQDNGEGI--KEISKIFLPYYSSK 560


>gi|23502939|ref|NP_699066.1| sensor histidine kinase BvrS [Brucella suis 1330]
 gi|23348973|gb|AAN30981.1| sensor histidine kinase BvrS, putative [Brucella suis 1330]
          Length = 601

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R    +  LIEN+      D    R+   +AG G      + DNG G+  E I    +R 
Sbjct: 485 RFGQVVSNLIENARSFVPDDTG--RIVVTLAGEGNRLRILVEDNGPGIPIENIERIFERF 542

Query: 76  CT 77
            T
Sbjct: 543 YT 544


>gi|327413117|emb|CAX68146.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica]
          Length = 795

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        AI ELI NS+DA +  V   I+  G S     D+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SIGKAIIELIMNSVDAGAGAVMIDISPEGFSC---RDDGQG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            + +++     R  T
Sbjct: 60 FASRDDVIRYFGRFGT 75


>gi|228941960|ref|ZP_04104503.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974891|ref|ZP_04135452.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981483|ref|ZP_04141780.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228778162|gb|EEM26432.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228784744|gb|EEM32762.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817629|gb|EEM63711.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 334

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNAIEAMSVGGTITIKVTVKDG--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|108762891|ref|YP_631794.1| putative sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466771|gb|ABF91956.1| putative sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 716

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAG-----GGKSFFQITDNGFGMTSEEIPMAV 72
           E+I   +IA+ EL+ N+ DA++  V+          GG     I D+G GM+ E +  + 
Sbjct: 43  ELISDETIAVVELVRNAWDADALSVKVAFHNAQNALGG--SLDIIDDGHGMSKETVLGSW 100

Query: 73  QRHCT--SKISDDFSNIH-TFGFRGEALPSIGAVS------HLTLMSRPPQNNTGAQIAI 123
            +  T   K+     +     G +G     IG  +       L L+++     T  +  +
Sbjct: 101 LQPATPDKKLRHASPSGRPLLGKKG-----IGRFAADKLARKLVLITKKEGETTATRAVV 155

Query: 124 SGEKISSVRPV 134
              +       
Sbjct: 156 DWNQFDDPMKF 166


>gi|118420998|dbj|BAF37224.1| DNA gyrase subunit B [Marinobacter hydrocarbonoclasticus]
          Length = 475

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 75/252 (29%), Gaps = 36/252 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           EL++NS+D   A   S +  +I         + DNG G+      EE   A +      H
Sbjct: 16  ELVDNSIDEALAGYCSEIGIIIHPD--ESITVKDNGRGIPVDLHEEEGVSAAEVIMTVLH 73

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      LTL  R        ++        
Sbjct: 74  AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----SLTLTIRRDG-----KVYEQSYTHG 122

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                    G           IP+   F    Q   +++   +R +A     V    +  
Sbjct: 123 VPNAPLGEVGETDASGTKVHFIPSPETFT-HIQFHYDILAKRLRELAFLNSGVRIRLTDE 181

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           +S + ++      G     +  +       N V    +  E  +     +   N      
Sbjct: 182 RSGKEEI--FEYEGGLRAFVEHLNTNKTAINRVFHFNREREDGIAVEVAMQW-NDAFQEN 238

Query: 250 FYVFINGRTVQD 261
            Y F N    +D
Sbjct: 239 IYCFTNNIPQRD 250


>gi|120552949|ref|YP_957300.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8]
 gi|120322798|gb|ABM17113.1| DNA gyrase subunit B [Marinobacter aquaeolei VT8]
          Length = 804

 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 75/252 (29%), Gaps = 36/252 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           EL++NS+D   A   S +  +I         + DNG G+      EE   A +      H
Sbjct: 43  ELVDNSIDEALAGYCSEIGIIIHPD--ESITVKDNGRGIPVDLHEEEGVSAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      LTL  R        ++        
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----SLTLTIRRDG-----KVYEQSYTHG 149

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                    G           IP+   F    Q   +++   +R +A     V    +  
Sbjct: 150 VPNAPLGEVGETDASGTKVHFIPSPETFT-HIQFHYDILAKRLRELAFLNSGVRIRLTDE 208

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           +S + ++      G     +  +       N V    +  E  +     +   N      
Sbjct: 209 RSGKEEI--FEYEGGLRAFVEHLNTNKTAINRVFHFNREREDGIAVEVAMQW-NDAFQEN 265

Query: 250 FYVFINGRTVQD 261
            Y F N    +D
Sbjct: 266 IYCFTNNIPQRD 277


>gi|323496192|ref|ZP_08101250.1| hypothetical protein VISI1226_11586 [Vibrio sinaloensis DSM 21326]
 gi|323318469|gb|EGA71422.1| hypothetical protein VISI1226_11586 [Vibrio sinaloensis DSM 21326]
          Length = 650

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA-ESSR---VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA ES++   +   +     S    + DNG G+ +++IP       
Sbjct: 543 RLEQVLVNLISNAIDAVESTQEPLIVVSVVRLENSVTIAVKDNGKGILADDIPHIFDPFY 602

Query: 77  TSK 79
           T K
Sbjct: 603 TQK 605


>gi|313886485|ref|ZP_07820201.1| hypothetical protein HMPREF9294_1409 [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|312924031|gb|EFR34824.1| hypothetical protein HMPREF9294_1409 [Porphyromonas
          asaccharolytica PR426713P-I]
          Length = 561

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E I N+ DA++ RV   I    KS   I D+G GMTS++      R   SK
Sbjct: 31 EAISNAWDADAKRVSITIDRD-KSLLIIRDDGIGMTSKDFQDKFLRIGYSK 80


>gi|226359826|ref|YP_002777604.1| two-component histidine kinase [Rhodococcus opacus B4]
 gi|226238311|dbj|BAH48659.1| putative two-component histidine kinase [Rhodococcus opacus B4]
          Length = 425

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC---T 77
              A +EL+ N +  A +  V   ++  GG +   +TD+G G++ E I  ++ R     T
Sbjct: 321 LFSAARELLSNVVKHARARTVRVELSRTGGHAVLDVTDDGCGISREAIDRSLSRGHIGLT 380

Query: 78  S 78
           S
Sbjct: 381 S 381


>gi|225456400|ref|XP_002280533.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1096

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   +      G     I DNG GM  E++   +    +  SKI
Sbjct: 443 ELLDNSLDEICNGATYVNVDMLENKKDGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKI 502

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 503 AN---TIGQYG 510


>gi|149175056|ref|ZP_01853679.1| Molecular chaperone, HSP90 family protein [Planctomyces maris DSM
           8797]
 gi|148846034|gb|EDL60374.1| Molecular chaperone, HSP90 family protein [Planctomyces maris DSM
           8797]
          Length = 861

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 31/140 (22%)

Query: 27  IKELIENS---L--------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEI---PMAV 72
           I+ELI+N+   +        DA S R++         F  I DNG GM   +I      +
Sbjct: 27  IRELIQNAHDGILRRQSRESDAFSPRIDIESRPDELQFI-IRDNGLGMDLNDIGEYLAVI 85

Query: 73  QRHCTSKISDDFSN-IHTFGFRGEALPSIGAVS------HLTLMSRPPQNNTGAQIAISG 125
            R  T     D +  +  FG        IG +S       + + +R   ++ G + + SG
Sbjct: 86  GRGATRLEKGDVTGLVGQFG--------IGFLSAFIVAERVEVETRKTGDDDGWKWSNSG 137

Query: 126 EKISSVRPVAMNPG-TIVEV 144
            +  +V  V+ +   T V V
Sbjct: 138 TQEYTVSNVSKDSFGTTVTV 157


>gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
 gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
          Length = 585

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++   D    RV+  +   G      + D G G+  E+IP   +R  
Sbjct: 483 LVDNAIKYTDEG-GRVDVSVYENGAHFCILVEDTGCGIPEEDIPRIFERFY 532


>gi|225851073|ref|YP_002731307.1| DNA gyrase, B subunit [Persephonella marina EX-H1]
 gi|225645970|gb|ACO04156.1| DNA gyrase, B subunit [Persephonella marina EX-H1]
          Length = 805

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ELI+N++D   A  +  +  VI   G     + D+G G+  +
Sbjct: 49 ELIDNAVDEAMAGFAKNISVVIHEDG--SVTVEDDGRGIPVD 88


>gi|145593129|ref|YP_001157426.1| hypothetical protein Strop_0567 [Salinispora tropica CNB-440]
 gi|145302466|gb|ABP53048.1| hypothetical protein Strop_0567 [Salinispora tropica CNB-440]
          Length = 438

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 31  IENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           ++NS+ A ++RVE  I   G      I D+G GM++  +  A+ R+ +     D      
Sbjct: 35  VDNSVAAGANRVEIDIVFDGFDSWVMIADDGEGMSANGLLEAL-RYGS---RRD-YGRGD 89

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
            G  G  L   S+     LT++SR           +    + +     
Sbjct: 90  LGRYGLGLKTASLSQCRSLTVVSRRRAATARTVSRMIDLDLIAEVDDW 137


>gi|158320928|ref|YP_001513435.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
 gi|158141127|gb|ABW19439.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
          Length = 705

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 26 AIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSE 66
          A+ ELI+NS DA++  V+     +         I DNG GM+ +
Sbjct: 28 AVLELIKNSYDADAKEVKVTMQNLDDPLAGTIIIEDNGDGMSLD 71


>gi|71725922|gb|AAZ39079.1| gyrase subunit B [Exiguobacterium antarcticum]
          Length = 513

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 21 EIVDNSIDEALAGYCDTIKVTIESG--NSILVEDNGRGIPVD 60


>gi|70733517|ref|YP_257156.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf-5]
 gi|68347816|gb|AAY95422.1| DNA gyrase, B subunit [Pseudomonas fluorescens Pf-5]
          Length = 805

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELILTVRRSGKIWEQTYVHGVPQERMKIVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 161 DSETTGTQIH-----FKPSAETFKNIHFSWDVLAKRIRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       E  +     +   N         F N
Sbjct: 216 LFKY--EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|302387090|ref|YP_003822912.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197718|gb|ADL05289.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 345

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 31  IENSLDAESS--RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           ++N+LD   +  R+          +   + DNG G+  E+I    +R   S+ S D   I
Sbjct: 246 VKNALDHTDTGGRIAIEWKKLPAVTQIIVRDNGSGIHPEDIHHIFKRFYRSRFSKDTQGI 305

Query: 88  H 88
            
Sbjct: 306 G 306


>gi|149189507|ref|ZP_01867791.1| hypothetical protein VSAK1_00757 [Vibrio shilonii AK1]
 gi|148836664|gb|EDL53617.1| hypothetical protein VSAK1_00757 [Vibrio shilonii AK1]
          Length = 657

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA--ESS--RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA   S+  ++   I    K+    + DNG G+ ++E+P       
Sbjct: 549 RLEQVLVNLVSNALDAVEGSAEPQLVVSIWSDTKTVSVSVQDNGKGIPADELPYLFDPFY 608

Query: 77  TSK 79
           ++K
Sbjct: 609 STK 611


>gi|328949382|ref|YP_004366719.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489]
 gi|328449706|gb|AEB15422.1| DNA gyrase, B subunit [Treponema succinifaciens DSM 2489]
          Length = 641

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 15/63 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQR 74
           + E+++NS+D   A   +++   +        ++ DNG G+  +         + + + R
Sbjct: 42  VYEVVDNSIDEAMAGYCTQITVALEKD--DICRVEDNGRGIPVDIHPTEHISALELVLTR 99

Query: 75  -HC 76
            H 
Sbjct: 100 LHA 102


>gi|294507492|ref|YP_003571550.1| DNA gyrase subunit B [Salinibacter ruber M8]
 gi|294343820|emb|CBH24598.1| DNA gyrase subunit B [Salinibacter ruber M8]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+++N++D A    +SR+E V+   G     ++DNG G+  ++ P
Sbjct: 41 EVVDNAVDEATNGYASRIEVVLHEDG-ESISVSDNGRGIPVDDHP 84


>gi|83815720|ref|YP_445608.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM
          13855]
 gi|83757114|gb|ABC45227.1| type II DNA topoisomerase, B subunit [Salinibacter ruber DSM
          13855]
          Length = 643

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+++N++D A    +SR+E V+   G     ++DNG G+  ++ P
Sbjct: 41 EVVDNAVDEATNGYASRIEVVLHEDG-ESISVSDNGRGIPVDDHP 84


>gi|253573903|ref|ZP_04851245.1| histidine kinase internal region [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846380|gb|EES74386.1| histidine kinase internal region [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 590

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 12/70 (17%)

Query: 18  EIIERPSI---AIKELIENSL-------DAESSRVETVIAGGG-KSFFQITDNGFGMTSE 66
           E I R       ++ L+ENS+       D     ++        +    + DNG G+  E
Sbjct: 466 EEITRLYTIKLVLQPLVENSIYHGIKEKD-GHGLIKVKFRRKEDRLLITVIDNGCGIPPE 524

Query: 67  EIPMAVQRHC 76
           E+   V+R  
Sbjct: 525 ELRQLVERLH 534


>gi|146321368|ref|YP_001201079.1| DNA gyrase B subunit [Streptococcus suis 98HAH33]
 gi|145692174|gb|ABP92679.1| DNA gyrase B subunit [Streptococcus suis 98HAH33]
          Length = 126

 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + ++E  I     +   + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFADKIEVYIEPD--NSITVIDNGRGIPVD 90


>gi|218190712|gb|EEC73139.1| hypothetical protein OsI_07163 [Oryza sativa Indica Group]
          Length = 811

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLD--A-ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD  A  ++ V   +      G     + D+G GM  +++   +    +  SK+
Sbjct: 151 ELLDNSLDEVANGATYVNIDMLENKKDGTRMVSVEDDGGGMDPDKMWHCMSLGYSAKSKV 210

Query: 81  SDDFSNIHTFG 91
            D    I  +G
Sbjct: 211 KD---TIGQYG 218


>gi|315127627|ref|YP_004069630.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913]
 gi|315016141|gb|ADT69479.1| DNA topoisomerase IV subunit B [Pseudoalteromonas sp. SM9913]
          Length = 629

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 24/214 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  ++R++ ++     +  +++D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEAMAGHATRIDVILHED--NSLEVSDDGRGMPIDIHPEEGIPGVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGE 126
           +   + H   K S+      + G  G  +  + A+S  + +  R                
Sbjct: 90  LIFTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDAQQFRMAFEHGDKV 148

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           +  +V        T   VR  +       ++  S       +  +++  A+  P +   F
Sbjct: 149 EDLNVIGSVGKRNTGTTVR-FWPDT----SYFDSANFSLTKLNHLLKAKAVLCPGLRIKF 203

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
              K  +    +    G     +  V G + +  
Sbjct: 204 -VNKQTKETQEWFYETGLKDYLVEAVKGYEILPK 236


>gi|313611863|gb|EFR86323.1| DNA gyrase subunit B [Listeria monocytogenes FSL F2-208]
          Length = 130

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|300865367|ref|ZP_07110178.1| DNA gyrase subunit B (fragment) [Oscillatoria sp. PCC 6506]
 gi|300336670|emb|CBN55328.1| DNA gyrase subunit B (fragment) [Oscillatoria sp. PCC 6506]
          Length = 410

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 35/185 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E+++NS+D   A   + ++  I   G     +TD+G G+ S+ +    +         
Sbjct: 38  VYEVVDNSIDEAMAGYCTHIQVDINADG--SVTVTDDGRGIPSDIVAKNGKSF------- 88

Query: 83  DFSNIHTFGFRGE----------------ALPSIGAVSH-LTLMSRPPQNNTGAQIAISG 125
               + T   RGE                 +  I A+S  L +     +     +     
Sbjct: 89  -VETVLTVLHRGEWCDRDSYKVSGGLHGVGIAVINALSEWLEVTVWRKEQIYTQRFERGI 147

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                +   ++   T   V       P    F  S + + N     +R++A   P ++  
Sbjct: 148 PVTELIAKPSLENRTGTSVTFK----PDSQIFTTSIEFDYNTFAIHLRQIAYVNPGLTII 203

Query: 186 FSTIK 190
            +   
Sbjct: 204 LTDNS 208


>gi|322434819|ref|YP_004217031.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321162546|gb|ADW68251.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 479

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 30  LIENSLDAESSRVETVIA-------GGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++DA        +         G      +I DNG G+  E  P       T+K
Sbjct: 379 LIDNAIDASFEHGTVKVKTWAEPGADGQTELCIRIEDNGSGIPLESQPKVFDPFYTTK 436


>gi|269468716|gb|EEZ80341.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [uncultured SUP05 cluster bacterium]
          Length = 627

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ERP+   +E+I+NS+D   A  +S++  V+   G     + D+G GM  +
Sbjct: 29 ERPNHLAQEVIDNSVDEAVAGHASKINVVLYKNG--SLSVEDDGRGMPVD 76


>gi|326800126|ref|YP_004317945.1| hypothetical protein Sph21_2728 [Sphingobacterium sp. 21]
 gi|326550890|gb|ADZ79275.1| hypothetical protein Sph21_2728 [Sphingobacterium sp. 21]
          Length = 677

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSF---FQITDNGFGMT 64
          AI ELI N  DA +S +  V       +    QI DNG G+ 
Sbjct: 24 AICELIWNGFDANASLINIVFKPNNIDYINEIQIIDNGTGIP 65


>gi|315286766|ref|ZP_07872180.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
 gi|313630895|gb|EFR98587.1| DNA gyrase subunit B [Listeria ivanovii FSL F6-596]
          Length = 481

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|160871833|ref|ZP_02061965.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli]
 gi|159120632|gb|EDP45970.1| DNA topoisomerase IV, B subunit [Rickettsiella grylli]
          Length = 630

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 34/239 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  ++ V+     +  +++D+G GM      EE    + 
Sbjct: 35  RPNHLAQEVIDNSVDEAIAGYARHIDVVLHVD--NSLEVSDDGRGMPVDVHPEEKVTGVE 92

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTGAQIAISG 125
           + + R H   K +       + G  G  +  + A+SH   +T+     ++    Q+    
Sbjct: 93  LILTRLHAGGKFNHKNYR-FSGGLHGVGVSVVNALSHRLQVTI----RRDGFIYQMQFEQ 147

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--VS 183
               S         T      L F  P +  +  +E+   + +   +R  A+  P   V 
Sbjct: 148 GNKKSNLKKIGKMETATSGTSLRF-WPDKR-YFDNEKFSVSRLKHSLRAKAVLCPGLTVR 205

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQV-------IGEDFINNAVELNEKSNEITLQG 235
           FT                     + + QV           F     E++     +   G
Sbjct: 206 FTDKQANKKDKWFYVDGVLSYLKDSLRQVERIPKEPFHGHFATEIEEVDWALCWLLESG 264


>gi|20807657|ref|NP_622828.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516203|gb|AAM24432.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 438

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 29  ELIENSLDA-----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKI 80
           ELI+N+++A         +E  ++  G+    ++ DNG G+  + +    +   ++K 
Sbjct: 332 ELIQNAIEAIDKEIG--VIEVELSQDGEDVIFKVKDNGEGIKPKNLETIFEPGFSTKF 387


>gi|309799460|ref|ZP_07693694.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
 gi|308116921|gb|EFO54363.1| DNA gyrase subunit B [Streptococcus infantis SK1302]
          Length = 207

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 21 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 60


>gi|307704602|ref|ZP_07641505.1| DNA gyrase subunit B [Streptococcus mitis SK597]
 gi|307621847|gb|EFO00881.1| DNA gyrase subunit B [Streptococcus mitis SK597]
          Length = 193

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|307706371|ref|ZP_07643183.1| DNA gyrase, B subunit [Streptococcus mitis SK321]
 gi|307618289|gb|EFN97444.1| DNA gyrase, B subunit [Streptococcus mitis SK321]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|306829208|ref|ZP_07462398.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          mitis ATCC 6249]
 gi|304428294|gb|EFM31384.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          mitis ATCC 6249]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|237820996|ref|ZP_04596841.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974M2]
          Length = 444

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|168490903|ref|ZP_02715046.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|169833521|ref|YP_001694269.1| DNA gyrase subunit B [Streptococcus pneumoniae Hungary19A-6]
 gi|182683725|ref|YP_001835472.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14]
 gi|221231606|ref|YP_002510758.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|225854322|ref|YP_002735834.1| DNA gyrase subunit B [Streptococcus pneumoniae JJA]
 gi|225858616|ref|YP_002740126.1| DNA gyrase subunit B [Streptococcus pneumoniae 70585]
 gi|303255780|ref|ZP_07341821.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455]
 gi|303260274|ref|ZP_07346245.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293]
 gi|303261480|ref|ZP_07347428.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292]
 gi|303264148|ref|ZP_07350069.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397]
 gi|303266242|ref|ZP_07352133.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457]
 gi|303268680|ref|ZP_07354470.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458]
 gi|1490397|emb|CAA91553.1| DNA gyrase [Streptococcus pneumoniae]
 gi|73916244|gb|AAZ92990.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916262|gb|AAZ92999.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916276|gb|AAZ93006.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916288|gb|AAZ93012.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916298|gb|AAZ93017.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916300|gb|AAZ93018.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916302|gb|AAZ93019.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916304|gb|AAZ93020.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916306|gb|AAZ93021.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916308|gb|AAZ93022.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916310|gb|AAZ93023.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916312|gb|AAZ93024.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916314|gb|AAZ93025.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916316|gb|AAZ93026.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916320|gb|AAZ93028.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916326|gb|AAZ93031.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916330|gb|AAZ93033.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916332|gb|AAZ93034.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916334|gb|AAZ93035.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916338|gb|AAZ93037.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916340|gb|AAZ93038.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916342|gb|AAZ93039.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916350|gb|AAZ93043.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|168996023|gb|ACA36635.1| DNA gyrase, B subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|182629059|gb|ACB90007.1| DNA gyrase subunit B [Streptococcus pneumoniae CGSP14]
 gi|183574700|gb|EDT95228.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC0288-04]
 gi|220674066|emb|CAR68579.1| DNA gyrase subunit B [Streptococcus pneumoniae ATCC 700669]
 gi|225721919|gb|ACO17773.1| DNA gyrase, B subunit [Streptococcus pneumoniae 70585]
 gi|225722735|gb|ACO18588.1| DNA gyrase, B subunit [Streptococcus pneumoniae JJA]
 gi|301801650|emb|CBW34348.1| DNA gyrase subunit B [Streptococcus pneumoniae INV200]
 gi|302597164|gb|EFL64269.1| DNA gyrase subunit B [Streptococcus pneumoniae BS455]
 gi|302637614|gb|EFL68101.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS292]
 gi|302638598|gb|EFL69062.1| DNA gyrase subunit B [Streptococcus pneumoniae SP-BS293]
 gi|302641740|gb|EFL72097.1| DNA gyrase subunit B [Streptococcus pneumoniae BS458]
 gi|302644172|gb|EFL74428.1| DNA gyrase subunit B [Streptococcus pneumoniae BS457]
 gi|302646553|gb|EFL76779.1| DNA gyrase subunit B [Streptococcus pneumoniae BS397]
 gi|327390163|gb|EGE88506.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA04375]
 gi|332076087|gb|EGI86553.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41301]
 gi|332202670|gb|EGJ16739.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA41317]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|73916248|gb|AAZ92992.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|73916264|gb|AAZ93000.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|148992476|ref|ZP_01822171.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|149021676|ref|ZP_01835707.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|168489810|ref|ZP_02714009.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195]
 gi|237649436|ref|ZP_04523688.1| DNA gyrase subunit B [Streptococcus pneumoniae CCRI 1974]
 gi|307127642|ref|YP_003879673.1| DNA gyrase subunit B [Streptococcus pneumoniae 670-6B]
 gi|73916238|gb|AAZ92987.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916272|gb|AAZ93004.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916274|gb|AAZ93005.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916292|gb|AAZ93014.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916324|gb|AAZ93030.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147928793|gb|EDK79806.1| DNA gyrase subunit B [Streptococcus pneumoniae SP9-BS68]
 gi|147930137|gb|EDK81123.1| DNA gyrase subunit B [Streptococcus pneumoniae SP23-BS72]
 gi|183571773|gb|EDT92301.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP195]
 gi|301793963|emb|CBW36359.1| DNA gyrase subunit B [Streptococcus pneumoniae INV104]
 gi|306484704|gb|ADM91573.1| DNA gyrase, B subunit [Streptococcus pneumoniae 670-6B]
 gi|332073065|gb|EGI83544.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17570]
 gi|332204817|gb|EGJ18882.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA47901]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|73916266|gb|AAZ93001.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|148997114|ref|ZP_01824768.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70]
 gi|168492965|ref|ZP_02717108.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168575469|ref|ZP_02721405.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016]
 gi|194396954|ref|YP_002037451.1| DNA gyrase subunit B [Streptococcus pneumoniae G54]
 gi|307067411|ref|YP_003876377.1| type IIA topoisomerase subunit B [Streptococcus pneumoniae AP200]
 gi|73916242|gb|AAZ92989.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916254|gb|AAZ92995.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916268|gb|AAZ93002.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147756814|gb|EDK63854.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP11-BS70]
 gi|183577070|gb|EDT97598.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183578470|gb|EDT98998.1| DNA gyrase, B subunit [Streptococcus pneumoniae MLV-016]
 gi|194356621|gb|ACF55069.1| DNA gyrase, B subunit [Streptococcus pneumoniae G54]
 gi|306408948|gb|ADM84375.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Streptococcus pneumoniae AP200]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|148985841|ref|ZP_01818935.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71]
 gi|73916286|gb|AAZ93011.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916318|gb|AAZ93027.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916322|gb|AAZ93029.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916344|gb|AAZ93040.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|147921987|gb|EDK73111.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP3-BS71]
 gi|301799821|emb|CBW32390.1| DNA gyrase subunit B [Streptococcus pneumoniae OXC141]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|168484465|ref|ZP_02709417.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|73916352|gb|AAZ93044.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|172042299|gb|EDT50345.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1873-00]
 gi|332203962|gb|EGJ18029.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA47368]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|73916260|gb|AAZ92998.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|73916252|gb|AAZ92994.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|73916278|gb|AAZ93007.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916280|gb|AAZ93008.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916282|gb|AAZ93009.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916284|gb|AAZ93010.1| DNA gyrase subunit B [Streptococcus pneumoniae]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|225861290|ref|YP_002742799.1| DNA gyrase subunit B [Streptococcus pneumoniae Taiwan19F-14]
 gi|298255372|ref|ZP_06978958.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada
          MDR_19A]
 gi|298503188|ref|YP_003725128.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|73916290|gb|AAZ93013.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916294|gb|AAZ93015.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916296|gb|AAZ93016.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|225727003|gb|ACO22854.1| DNA gyrase, B subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238783|gb|ADI69914.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
          TCH8431/19A]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|15900699|ref|NP_345303.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4]
 gi|15902759|ref|NP_358309.1| DNA gyrase subunit B [Streptococcus pneumoniae R6]
 gi|111658143|ref|ZP_01408840.1| hypothetical protein SpneT_02000668 [Streptococcus pneumoniae
          TIGR4]
 gi|116516156|ref|YP_816203.1| DNA gyrase subunit B [Streptococcus pneumoniae D39]
 gi|149007692|ref|ZP_01831309.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|168486180|ref|ZP_02710688.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225856480|ref|YP_002737991.1| DNA gyrase subunit B [Streptococcus pneumoniae P1031]
 gi|61225463|sp|P0A4L9|GYRB_STRPN RecName: Full=DNA gyrase subunit B
 gi|61225464|sp|P0A4M0|GYRB_STRR6 RecName: Full=DNA gyrase subunit B
 gi|14972283|gb|AAK74943.1| DNA gyrase subunit B [Streptococcus pneumoniae TIGR4]
 gi|15458306|gb|AAK99519.1| DNA gyrase [Streptococcus pneumoniae R6]
 gi|73916240|gb|AAZ92988.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916246|gb|AAZ92991.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916250|gb|AAZ92993.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916256|gb|AAZ92996.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916258|gb|AAZ92997.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916270|gb|AAZ93003.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916328|gb|AAZ93032.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916336|gb|AAZ93036.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916346|gb|AAZ93041.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|73916348|gb|AAZ93042.1| DNA gyrase subunit B [Streptococcus pneumoniae]
 gi|116076732|gb|ABJ54452.1| DNA gyrase, B subunit [Streptococcus pneumoniae D39]
 gi|147760847|gb|EDK67818.1| DNA gyrase subunit B [Streptococcus pneumoniae SP18-BS74]
 gi|183570816|gb|EDT91344.1| DNA gyrase, B subunit [Streptococcus pneumoniae CDC1087-00]
 gi|225726173|gb|ACO22025.1| DNA gyrase, B subunit [Streptococcus pneumoniae P1031]
          Length = 648

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|115525255|ref|YP_782166.1| hypothetical protein RPE_3252 [Rhodopseudomonas palustris BisA53]
 gi|115519202|gb|ABJ07186.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 492

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS-K 79
               A+ +LI+NS+ AE++ V+ V        +  I DNG GM+  E+  A++    S K
Sbjct: 24  SLETAVADLIDNSISAEATTVDIVCEIAVAVPYLAILDNGRGMSRTELIDAMKHGSASPK 83

Query: 80  ISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
                   H  G  G  L   S      LT++S    + +GA+  +    
Sbjct: 84  TK---RGTHDLGRFGLGLKTASFSQCRSLTVVSLKKGDLSGAEWNLDRID 130


>gi|325674790|ref|ZP_08154477.1| sensor histidine kinase [Rhodococcus equi ATCC 33707]
 gi|325554376|gb|EGD24051.1| sensor histidine kinase [Rhodococcus equi ATCC 33707]
          Length = 545

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 23  PSIAIKELIENSLDA-----ESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               +  L++N++DA     ++   VE  +         ++ D+G GM  + +  A  R 
Sbjct: 423 LVTVVGNLVDNAIDAARSEGDARPWVEVTVTEEDSMLVIRVADSGPGMDPDALAQATTRG 482

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            ++K  D          RG  L  +       +++R   
Sbjct: 483 YSTKPVDGRPARQ----RGLGLALVAQ-----IVTRHGG 512


>gi|281491407|ref|YP_003353387.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis KF147]
 gi|281375141|gb|ADA64657.1| DNA gyrase, subunit B [Lactococcus lactis subsp. lactis KF147]
          Length = 651

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVFIEPD--NSITVVDDGRGIPVD 90


>gi|15672887|ref|NP_267061.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
 gi|12723837|gb|AAK05003.1|AE006324_6 DNA gyrase subunit B [Lactococcus lactis subsp. lactis Il1403]
 gi|326406451|gb|ADZ63522.1| DNA gyrase subunit B [Lactococcus lactis subsp. lactis CV56]
          Length = 651

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVFIEPD--NSITVVDDGRGIPVD 90


>gi|226942174|ref|YP_002797247.1| DNA gyrase subunit B [Azotobacter vinelandii DJ]
 gi|226717101|gb|ACO76272.1| DNA gyrase protein, subunit B [Azotobacter vinelandii DJ]
          Length = 806

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 23/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCNEISITIHTD--ESITVRDNGRGIPVDLHKEEGISAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  + G   + +  V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELVLTIRRDGKVWEQTYVHGVPQAPLATVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
              GT  +V               +     +++   +R ++     V       +S + +
Sbjct: 161 DTDGTGTQVH-----FKPSAETFHNIHFSWDILAKRLRELSFLNSGVGIVLKDERSGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       + V       E    G      +N G       F N
Sbjct: 216 LFKY--EGGLKAFVDYLNTNKNAVSQVFHFNVQREEDGVGVEVALQWNDGFNENILCFTN 273

Query: 256 GRTVQD 261
               +D
Sbjct: 274 NIPQRD 279


>gi|116511733|ref|YP_808949.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
 gi|125624430|ref|YP_001032913.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris MG1363]
 gi|116107387|gb|ABJ72527.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris SK11]
 gi|124493238|emb|CAL98205.1| topoisomerase IV subunit B [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300071217|gb|ADJ60617.1| DNA gyrase subunit B [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 651

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIEVFIEPD--NSITVVDDGRGIPVD 90


>gi|88706070|ref|ZP_01103778.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88699784|gb|EAQ96895.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 383

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE 67
           + ELI N+ DA+++ V   I+   +   ++ D+G GM+ E 
Sbjct: 28 VLAELIANAYDADANNVYI-ISN--RDDIRVEDDGHGMSYEN 66


>gi|313143631|ref|ZP_07805824.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128662|gb|EFR46279.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 594

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 15/78 (19%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKS-------- 52
          MKI     ++++Q+       +    I ELI N++ A ++ +E  I              
Sbjct: 7  MKINI--PEVVDQLKN----VKLENVIFELIVNAMQANATYIEFKIIASSLDNKNITPYV 60

Query: 53 -FFQITDNGFGMTSEEIP 69
             ++ DNG G   + + 
Sbjct: 61 DKIEVIDNGDGFNEDNLK 78


>gi|224437166|ref|ZP_03658147.1| ATPase, putative [Helicobacter cinaedi CCUG 18818]
          Length = 588

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 15/78 (19%)

Query: 1  MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKS-------- 52
          MKI     ++++Q+       +    I ELI N++ A ++ +E  I              
Sbjct: 1  MKINI--PEVVDQLKN----VKLENVIFELIVNAMQANATYIEFKIIASSLDNKNITPYV 54

Query: 53 -FFQITDNGFGMTSEEIP 69
             ++ DNG G   + + 
Sbjct: 55 DKIEVIDNGDGFNEDNLK 72


>gi|171321610|ref|ZP_02910539.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MEX-5]
 gi|171093109|gb|EDT38328.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MEX-5]
          Length = 672

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA--E--SSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 552 RLEQVLINLLGNALDAVAGVPAPAIEVTIAVSAATLAVEVRDNGPGIAPDLLPRLFEPFF 611

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 612 TTK---------EMG-RGLGLGLAISSSIAS 632


>gi|85708623|ref|ZP_01039689.1| topoisomerase B subunit [Erythrobacter sp. NAP1]
 gi|85690157|gb|EAQ30160.1| topoisomerase B subunit [Erythrobacter sp. NAP1]
          Length = 662

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          E+++NS+D   A  +SR+E  +  G  +   I+DNG G+  +E P 
Sbjct: 52 EVLDNSMDEAVAGHASRIEVRLEEG--NRLSISDNGRGIPVDEHPK 95


>gi|317495092|ref|ZP_07953463.1| DNA gyrase, subunit B [Gemella moribillum M424]
 gi|316914799|gb|EFV36274.1| DNA gyrase, subunit B [Gemella moribillum M424]
          Length = 643

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     ++ ++ DNG G+  +
Sbjct: 51 EIVDNSIDEALAGYCNTITVAIEKD--NWIRVEDNGRGIPID 90


>gi|262164768|ref|ZP_06032506.1| signal transduction histidine kinase [Vibrio mimicus VM223]
 gi|262027148|gb|EEY45815.1| signal transduction histidine kinase [Vibrio mimicus VM223]
          Length = 684

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 21  ERPSIAIKELIENSLDA-ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+LDA   +      +  V         +++DNG G+  E +    + 
Sbjct: 577 QRLRQVLGNLVSNALDAMGKTPEPKLSISAVSEEHQV-IVRVSDNGCGIAPELLTTLFEP 635

Query: 75  HCTSK 79
             TSK
Sbjct: 636 FQTSK 640


>gi|71894694|ref|YP_278802.1| DNA gyrase subunit B [Mycoplasma synoviae 53]
 gi|71851482|gb|AAZ44091.1| DNA gyrase subunit B [Mycoplasma synoviae 53]
          Length = 650

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 16/73 (21%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT-------SEEIPMAVQ-RH 75
           E+++NS+D   A  +  ++  I   GG S   + DNG G+           + +     H
Sbjct: 49  EIVDNSVDEVLAGYADNIKITITKDGGVS---VEDNGRGIPVDMHSKGKSALEIVFTGLH 105

Query: 76  CTSKISDDFSNIH 88
              K   D   + 
Sbjct: 106 AGGKFKSDAYKVS 118


>gi|332879043|ref|ZP_08446752.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682992|gb|EGJ55880.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 402

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA      +        GK   ++TD G G++            T+K
Sbjct: 303 VIENLCKNAIDAMGGQGCITVTAFEDAGKVVVEVTDTGKGISKNHFQTVFSPGFTTK 359


>gi|330997753|ref|ZP_08321592.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329569852|gb|EGG51610.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 392

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA      +        GK   ++TD G G++            T+K
Sbjct: 293 VIENLCKNAIDAMGGQGCITVTAFEDAGKVVVEVTDTGKGISKNHFQTVFSPGFTTK 349


>gi|297739950|emb|CBI30132.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 86/248 (34%), Gaps = 23/248 (9%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ- 73
           + E+++N++D   A  +S+V+ V+         ITDNG G+            +   +  
Sbjct: 100 VYEILDNAIDEAQAGFASKVDVVLLAD--DSVSITDNGRGIPTELHPVTKKSSLETVLTV 157

Query: 74  RHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   +    ++ + G  G  L  + A+S  L +           + +      S 
Sbjct: 158 LHAGGKFGGASSGYSV-SGGLHGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSL 216

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
              V     T ++   + F  P +  F    Q + N I   IR +A   P+++ T     
Sbjct: 217 THRVLPTESTDLQGTHIRF-WPDKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKED 275

Query: 191 SN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +  + + N     G   E +  +  +    + V    K  +  +     +   +   ++
Sbjct: 276 KDPEKNQYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVAD-GISIDVALQWCSDAYSD 334

Query: 249 QFYVFING 256
               + N 
Sbjct: 335 TMLGYANS 342


>gi|225441215|ref|XP_002266668.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 719

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 86/248 (34%), Gaps = 23/248 (9%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ- 73
           + E+++N++D   A  +S+V+ V+         ITDNG G+            +   +  
Sbjct: 112 VYEILDNAIDEAQAGFASKVDVVLLAD--DSVSITDNGRGIPTELHPVTKKSSLETVLTV 169

Query: 74  RHCTSKI--SDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   +    ++ + G  G  L  + A+S  L +           + +      S 
Sbjct: 170 LHAGGKFGGASSGYSV-SGGLHGVGLSVVNALSEALEVTVWRDGMEYQQKYSRGKPVTSL 228

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
              V     T ++   + F  P +  F    Q + N I   IR +A   P+++ T     
Sbjct: 229 THRVLPTESTDLQGTHIRF-WPDKEVFTTEIQFDYNTIAGRIRELAFLNPELAITLRKED 287

Query: 191 SN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +  + + N     G   E +  +  +    + V    K  +  +     +   +   ++
Sbjct: 288 KDPEKNQYNEYCYAGGLVEYVRWLNTDKKPVHDVVGFRKVAD-GISIDVALQWCSDAYSD 346

Query: 249 QFYVFING 256
               + N 
Sbjct: 347 TMLGYANS 354


>gi|119713347|gb|ABL97411.1| DNA topoisomerase IV subunit B [uncultured marine bacterium
           EB80_02D08]
          Length = 631

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 15/75 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP-------- 69
            P+  I+E+++NS+D   +   S ++  +   G  F +++D+G GM  +E P        
Sbjct: 32  NPNHLIQEVLDNSVDEALSGYCSNIKVSVMKDG--FIKVSDDGRGMPIDEHPEHKVSGVE 89

Query: 70  -MAVQRHCTSKISDD 83
            +  + H  +K S D
Sbjct: 90  LILCKLHAGAKFSGD 104


>gi|297734460|emb|CBI15707.3| unnamed protein product [Vitis vinifera]
          Length = 830

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   +      G     I DNG GM  E++   +    +  SKI
Sbjct: 177 ELLDNSLDEICNGATYVNVDMLENKKDGNRMLLIEDNGGGMDPEKMRQCMSLGYSAKSKI 236

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 237 AN---TIGQYG 244


>gi|170702728|ref|ZP_02893588.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria IOP40-10]
 gi|170132363|gb|EDT00831.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria IOP40-10]
          Length = 672

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 552 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSVATLAVEVRDNGPGIAPDLLPRLFEPFF 611

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 612 TTK---------EMG-RGLGLGLAISSSIAS 632


>gi|108759974|ref|YP_633853.1| response regulator/putative sensor histidine kinase [Myxococcus
           xanthus DK 1622]
 gi|108463854|gb|ABF89039.1| response regulator/putative sensor histidine kinase [Myxococcus
           xanthus DK 1622]
          Length = 399

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 5   KLSEKIINQIAAGEIIER---PSIAIKELIENSLDA------ESSRVETVIA------GG 49
           +L ++ I       ++         + EL+ N++DA         R+   +         
Sbjct: 270 QLPDEAIA------VVFNRRQLEQVLVELLANAVDAVEDVTDRPRRIHVGVELPDIFGDF 323

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           G   + + D G G+  +E+    + + T+K  +
Sbjct: 324 GPRLY-VKDTGIGIFEDELQAVFEPYYTTKAPE 355


>gi|115352978|ref|YP_774817.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ambifaria AMMD]
 gi|115282966|gb|ABI88483.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ambifaria AMMD]
          Length = 672

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 552 RLEQVLINLLGNALDAVAGVAAPAIEVTIAVSVATLAVEVRDNGPGIAPDLLPRLFEPFF 611

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 612 TTK---------EMG-RGLGLGLAISSSIAS 632


>gi|332654825|ref|ZP_08420567.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
 gi|332516168|gb|EGJ45776.1| DNA gyrase, B subunit [Ruminococcaceae bacterium D16]
          Length = 650

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I  G  +   +TDNG G+  +
Sbjct: 53 VYEIVDNSIDEALAGYCTDITVTINPG--NTITVTDNGRGIPVD 94


>gi|291240309|ref|XP_002740062.1| PREDICTED: MORC-like, partial [Saccoglossus kowalevskii]
          Length = 654

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 60/174 (34%), Gaps = 27/174 (15%)

Query: 29  ELIENSLDAESSRVETVIAGG----GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           EL++N+ DA +SR+E          G       D+G GM   +    +    +SK     
Sbjct: 33  ELLDNARDAGASRIEVDTVLNDEVQGGYLIYFLDDGEGMDPGDTASIITFGKSSK----- 87

Query: 85  SNIHT--FGFRGEALPS----IGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
             IH+   G  G  L S    IG    + L ++     +   I+ +  +  ++       
Sbjct: 88  RAIHSNMIGQYGNGLKSGSMRIGK--DMILFTKKDDTKSCLFISRTFHEDKNIEE----- 140

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNL--ITDVIRRMAIAYPKVSFTFSTIK 190
              V V    F        LK+    T      ++I + +  + +  F     K
Sbjct: 141 ---VIVPIPSFNGRTNQPLLKNGADITKHEQEMELILKYSPFHSEKDFMAQFDK 191


>gi|288929798|ref|ZP_06423641.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328899|gb|EFC67487.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 657

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          + E ++NS+D   A   S +E  I     +   + D+G G+  +E    
Sbjct: 45 VNETVDNSIDEAMAGYCSNIEVTINED--NSITVQDDGRGIPVDEHEKL 91


>gi|331703509|ref|YP_004400196.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC
          str. 95010]
 gi|256384465|gb|ACU79035.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri
          str. GM12]
 gi|256385298|gb|ACU79867.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp. capri
          str. GM12]
 gi|296455442|gb|ADH21677.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma mycoides
          JCVI-syn1.0]
 gi|328802064|emb|CBW54218.1| Topoisomerase IV subunit B [Mycoplasma mycoides subsp. capri LC
          str. 95010]
          Length = 643

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   ++++ ++     +   + DNG G+ 
Sbjct: 43 EIVDNAIDEALAGYCTQIDVILEKD--NSITVIDNGRGIP 80


>gi|196234231|ref|ZP_03133062.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196221690|gb|EDY16229.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 562

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 30  LIENSLDAESSR--VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LI NS+DA   R  +       G+     + D+G GM+ E     ++   ++K  +D 
Sbjct: 332 LIFNSIDAIPKRGTITIETETQGRWLAITVKDDGLGMSEEVKARCLEPFYSTK--EDL 387


>gi|83319442|ref|YP_424431.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
          capricolum ATCC 27343]
 gi|90110022|sp|P50028|GYRB_MYCCT RecName: Full=DNA gyrase subunit B
 gi|83283328|gb|ABC01260.1| DNA topoisomerase IV, B subunit [Mycoplasma capricolum subsp.
          capricolum ATCC 27343]
          Length = 643

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   ++++ ++     +   + DNG G+ 
Sbjct: 43 EIVDNAIDEALAGYCTQIDVILEKD--NSITVIDNGRGIP 80


>gi|938029|dbj|BAA05969.1| DNA gyrase subunit B [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
          Length = 104

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   ++++ ++     +   + DNG G+ 
Sbjct: 43 EIVDNAIDEALAGYCTQIDVILEKD--NSITVIDNGRGIP 80


>gi|315607416|ref|ZP_07882412.1| sensor histidine kinase [Prevotella buccae ATCC 33574]
 gi|315250848|gb|EFU30841.1| sensor histidine kinase [Prevotella buccae ATCC 33574]
          Length = 398

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 15/67 (22%)

Query: 19  IIERPSIAIKELIENSLDA-----ESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAV 72
           +IE  +       +N++DA         V   +   G K+  +++D G G+  +++    
Sbjct: 297 VIENLA-------KNAIDAMGGVPG--TVTLRVEDAGEKAVIEVSDTGRGIRRKDVGNVF 347

Query: 73  QRHCTSK 79
           +   T+K
Sbjct: 348 RPGFTTK 354


>gi|284931406|gb|ADC31344.1| DNA topoisomerase IV subunit B [Mycoplasma gallisepticum str. F]
          Length = 633

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 23/241 (9%)

Query: 29  ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           EL +N++D A    ++++E V    G     +TDNG G+      +  +          H
Sbjct: 41  ELFDNAVDEALNGSANKIEVVHKKDG--SIIVTDNGRGIPVGKNLATNLSTVDTVYTVLH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D    + + G  G     + A+S   +++          I   G KI       
Sbjct: 99  AGGKFDDQAYKV-SGGLHGVGASVVNALSRKLIVNVHRDGGMYESIYQDGGKIIQPLKKM 157

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +      +   +          K+ Q    +I + +   +  +  +   F    +    
Sbjct: 158 GSSTKHGTIIQFW----PDPTIFKNIQFNPYMIKERLHESSFLFKGLKIVFVDENNPELS 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
             F + +G           +  I+  +       +I + G      +    +     F N
Sbjct: 214 QTFIAKDGILEYLKYVNENKKTISKIIPFKGDYEKIVVDGCF---QYTDNESELIISFAN 270

Query: 256 G 256
            
Sbjct: 271 S 271


>gi|262283011|ref|ZP_06060778.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
 gi|262261263|gb|EEY79962.1| DNA gyrase subunit B [Streptococcus sp. 2_1_36FAA]
          Length = 649

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDDGRGIPVD 89


>gi|226366067|ref|YP_002783850.1| two-component histidine kinase [Rhodococcus opacus B4]
 gi|226244557|dbj|BAH54905.1| putative two-component histidine kinase [Rhodococcus opacus B4]
          Length = 538

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 34/123 (27%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLD-------AESSRVETVI-AGGGKSFFQ 55
             L  ++     A ++I      +  LI+N++D       A   R+   I    G    +
Sbjct: 423 HALDPEL-----ATDVIT----VLGNLIDNAVDVSEGGRDA---RISIRITDDDGI-LIE 469

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN 115
           ++D+G G+          R  TSK         T G RG  L        + L+S     
Sbjct: 470 VSDSGPGVPEPMREEIFSRGVTSK-------PGTPGGRGIGLA------LVRLVSSQHGG 516

Query: 116 NTG 118
           +  
Sbjct: 517 SAA 519


>gi|226303498|ref|YP_002763456.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4]
 gi|229491178|ref|ZP_04385006.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121]
 gi|226182613|dbj|BAH30717.1| DNA gyrase subunit B [Rhodococcus erythropolis PR4]
 gi|229321916|gb|EEN87709.1| DNA gyrase, B subunit [Rhodococcus erythropolis SK121]
          Length = 678

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +++VE  +   GG    ++ D+G G+ 
Sbjct: 51 EVVDNSVDEAMAGHATKVEVTLLEDGG---IRVIDDGRGIP 88


>gi|157151219|ref|YP_001450712.1| DNA gyrase subunit B [Streptococcus gordonii str. Challis substr.
          CH1]
 gi|157076013|gb|ABV10696.1| DNA gyrase, B subunit [Streptococcus gordonii str. Challis
          substr. CH1]
          Length = 649

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 50 EIVDNSIDEALAGFASHIQVFIEKD--NSITVVDDGRGIPVD 89


>gi|118602571|ref|YP_903786.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str.
          Cm (Calyptogena magnifica)]
 gi|118567510|gb|ABL02315.1| DNA topoisomerase IV subunit B [Candidatus Ruthia magnifica str.
          Cm (Calyptogena magnifica)]
          Length = 627

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ERP+   +E+I+NS+D   A  +S++  ++   G     + DNG GM  +
Sbjct: 29 ERPNHLAQEVIDNSVDETIAGYASKISVILYKDG--SLSVEDNGRGMPVD 76


>gi|330500918|ref|YP_004377787.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01]
 gi|328915204|gb|AEB56035.1| DNA gyrase subunit B [Pseudomonas mendocina NK-01]
          Length = 806

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 23/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCSEITITIHPD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  + G   + +  V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKELVLTIRRSGKIWEQTYVHGVPQAPLTAVG 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
              GT  ++               +     +++   +R ++     V       ++ + +
Sbjct: 161 DTDGTGTQIH-----FKPSEETFANIHFSWDILAKRLRELSFLNSGVGILLRDERTGKEE 215

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +     + N V       E    G      +N         F N
Sbjct: 216 LFKY--EGGLKAFVEFLNTNKTVVNQVFHFNIQREEDGVGVEVALQWNDSFNENILCFTN 273

Query: 256 GRTVQD 261
               +D
Sbjct: 274 NIPQRD 279


>gi|320104795|ref|YP_004180386.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644]
 gi|319752077|gb|ADV63837.1| DNA topoisomerase IV subunit B [Isosphaera pallida ATCC 43644]
          Length = 652

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D      +SR+   +   G++   ++DNG G+  +
Sbjct: 54 EIVDNAIDEVMNGHASRIVVELEADGRTL-SVSDNGRGIPVD 94


>gi|86359113|ref|YP_471005.1| putative chemotaxis two-component sensor histidine kinase protein
           [Rhizobium etli CFN 42]
 gi|86283215|gb|ABC92278.1| putative chemotaxis two-component sensor histidine kinase protein
           [Rhizobium etli CFN 42]
          Length = 683

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLD--------------AESSRVETVIAG-GGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D              A++  +       GG+    I D+G G
Sbjct: 395 TVIERLADPLVHLVRNSIDHGLEVPADRLAAGKAKAGTITLSARQAGGEVIISIKDDGRG 454

Query: 63  MTSE 66
           +  E
Sbjct: 455 INRE 458


>gi|20807372|ref|NP_622543.1| sensory transduction histidine kinase [Thermoanaerobacter
          tengcongensis MB4]
 gi|254478311|ref|ZP_05091691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Carboxydibrachium pacificum DSM 12653]
 gi|20515891|gb|AAM24147.1| Sensory transduction histidine kinases [Thermoanaerobacter
          tengcongensis MB4]
 gi|214035776|gb|EEB76470.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Carboxydibrachium pacificum DSM 12653]
          Length = 182

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  VE  I    +       + D+G GM  E +        T
Sbjct: 11 LAQNSVRAGAKNVEIEIEENPQEDLLTVYVKDDGCGMKKEFLEKVTSPFVT 61


>gi|320095115|ref|ZP_08026824.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp.
          oral taxon 178 str. F0338]
 gi|319977982|gb|EFW09616.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp.
          oral taxon 178 str. F0338]
          Length = 680

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +  +E  I   GG    ++ DNG G+  +E P
Sbjct: 54 VYEVVDNSVDEALAGYADHIEVTIQSDGG---IKVVDNGRGIPVDEHP 98


>gi|317499761|ref|ZP_07958017.1| hypothetical protein HMPREF0996_03001 [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316892963|gb|EFV15189.1| hypothetical protein HMPREF0996_03001 [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 669

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 23 PSIAIKELIENSLDAESSRVETVIAGGGKSFF---QITDNGFGMTSEEIPMAVQRHCTSK 79
          P  A+ E I N  DA+++++E  +            I DNG G+  EE+    +    SK
Sbjct: 20 PLDALCEYIWNGFDAQANKIEIKLHTNQLRLIDKISIIDNGTGIAYEELGNKFKPFNDSK 79


>gi|315605502|ref|ZP_07880539.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312769|gb|EFU60849.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 697

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +  +E  I   GG    ++ DNG G+  +E P
Sbjct: 71  VYEVVDNSVDEALAGYADHIEVTIQADGG---IKVVDNGRGIPVDEHP 115


>gi|315273170|ref|ZP_07869216.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
 gi|313616206|gb|EFR89285.1| DNA gyrase subunit B [Listeria marthii FSL S4-120]
          Length = 415

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|282878003|ref|ZP_06286811.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
 gi|281299838|gb|EFA92199.1| DNA gyrase, B subunit [Prevotella buccalis ATCC 35310]
          Length = 657

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 74/252 (29%), Gaps = 41/252 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ---------RH 75
           E ++NS+D   A   + +E  I         + DNG G+  ++     +          H
Sbjct: 47  ETVDNSIDEAMAGYCTDIEVTINDD--ESITVQDNGRGIPVDQHEKLHKSALEVVMTVLH 104

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K       + + G  G       AL S        + S+  ++    Q      K  
Sbjct: 105 AGGKFDKGSYKV-SGGLHGVGVSCVNALSS-------HMTSQVFRDGKIYQQEYERGKAL 156

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST- 188
               V          +  +       +   +   + ++I   +R +A     +  T +  
Sbjct: 157 YPVKVIGETNLRGTRQQFW----PDGSIFTTTHFQWDIIARRMRELAFLNAGIRITLTDL 212

Query: 189 --IKSNRYKMNFQSTNGNFPERISQV--IGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
              +  + +           E +  V        ++ + L  +   I ++       +N 
Sbjct: 213 RPNEEGKTRTEVFHAKDGLKEFVRYVDRHRTHLFDDVIYLKTEKQGIPIEVAI---MYNT 269

Query: 245 GNANQFYVFING 256
             +   + ++N 
Sbjct: 270 DYSENIHSYVNN 281


>gi|256389238|ref|YP_003110802.1| DNA gyrase subunit B [Catenulispora acidiphila DSM 44928]
 gi|256355464|gb|ACU68961.1| DNA gyrase, B subunit [Catenulispora acidiphila DSM 44928]
          Length = 661

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 79/255 (30%), Gaps = 37/255 (14%)

Query: 27  IKELIENSLD---AE-SSRVET-VIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ 73
           + E+++NS+D   A  +  +E  ++A GG     + DNG G+            + + + 
Sbjct: 52  VYEIVDNSVDEAMAGYADTIEVWLLADGGVK---VVDNGRGIPVGINTKTGKSALEVVMT 108

Query: 74  -RHCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQ---NNTGAQIAI 123
             H   K  D    + + G  G       AL S      + +         N        
Sbjct: 109 ILHAGGKFGDGGYKV-SGGLHGVGVSVVNALSS-----RVEVEVHTDGFVWNQVYKHGVP 162

Query: 124 SGEKISSVRPVAMNPGTIV--EVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
             E             TI   +V     T+ +     +  Q    L   +   +    P+
Sbjct: 163 ETEVQKGGPAADTGTSTIFWADVDIFETTVYSFETLSRRFQEMAFLNKGLTISLTDERPE 222

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT 241
             F     +    K + +    +F   I+   GE    N ++   +  + TL     +  
Sbjct: 223 --FRDENGEQRSVKYHAEGGIADFVRHINSRKGEPVHPNVIDFEGEDKDRTLAAEIALQW 280

Query: 242 FNRGNANQFYVFING 256
            +   +   Y F N 
Sbjct: 281 NS-QYSESIYTFANN 294


>gi|150024464|ref|YP_001295290.1| two-component system sensor histidine kinase involved in phosphate
           regulation [Flavobacterium psychrophilum JIP02/86]
 gi|149771005|emb|CAL42472.1| Two-component system sensor histidine kinase involved in phosphate
           regulation [Flavobacterium psychrophilum JIP02/86]
          Length = 354

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 25  IAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             +  L+ENS+       S+ +        K    + DNG G+  + I    +R  
Sbjct: 245 QVVTNLVENSIKYGKIGGSTEIGVEEVINNKILINVKDNGEGIEKQNISRLFERFY 300


>gi|116053662|ref|YP_793989.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894615|ref|YP_002443485.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|254243062|ref|ZP_04936384.1| hypothetical protein PA2G_03852 [Pseudomonas aeruginosa 2192]
 gi|296392377|ref|ZP_06881852.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
 gi|313111547|ref|ZP_07797346.1| putative sensor histidine kinase [Pseudomonas aeruginosa 39016]
 gi|115588883|gb|ABJ14898.1| putative sensor histidine kinase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126196440|gb|EAZ60503.1| hypothetical protein PA2G_03852 [Pseudomonas aeruginosa 2192]
 gi|218774844|emb|CAW30662.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|310883848|gb|EFQ42442.1| putative sensor histidine kinase [Pseudomonas aeruginosa 39016]
          Length = 588

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA + +    +   +   GG     + DNG G+ +E +        
Sbjct: 476 RLEQVLVNLLRNALDAVAGQERPWIRLALQRLGGDWVLSVADNGGGIPAEHLGSVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|15600705|ref|NP_254199.1| MifS [Pseudomonas aeruginosa PAO1]
 gi|107104614|ref|ZP_01368532.1| hypothetical protein PaerPA_01005693 [Pseudomonas aeruginosa PACS2]
 gi|254237808|ref|ZP_04931131.1| hypothetical protein PACG_03904 [Pseudomonas aeruginosa C3719]
 gi|9951848|gb|AAG08897.1|AE004963_10 MifS [Pseudomonas aeruginosa PAO1]
 gi|126169739|gb|EAZ55250.1| hypothetical protein PACG_03904 [Pseudomonas aeruginosa C3719]
          Length = 588

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA + +    +   +   GG     + DNG G+ +E +        
Sbjct: 476 RLEQVLVNLLRNALDAVAGQERPWIRLALQRLGGDWVLSVADNGGGIPAEHLGSVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|327485737|gb|AEA80143.1| DNA mismatch repair protein MutL [Vibrio cholerae LMA3894-4]
          Length = 233

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS- 78
               I ELI N  DA +  V   I      G     + D+G G+          R   S 
Sbjct: 29  LQSVI-ELIANGFDANAQTVHVDIEYSEMDGLVSVSVCDDGTGIDIGSCDEHFSRFYESS 87

Query: 79  -KISDDFSNIHTFG 91
            K  DD    H  G
Sbjct: 88  KKDDDDLQGAHGRG 101


>gi|325289366|ref|YP_004265547.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964767|gb|ADY55546.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 350

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 31  IENSLDAESSRVETVIAGGGK---SFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           ++N+LD   +  + VI   G    +   + DNG G+  E+I    +R   S+   D   I
Sbjct: 246 VKNALDHTDTGGQIVIEWKGLPAITQITVRDNGSGIHPEDIHHIFKRFYRSRFFKDTQGI 305

Query: 88  H 88
            
Sbjct: 306 G 306


>gi|290892043|ref|ZP_06555040.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
 gi|290558637|gb|EFD92154.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
          Length = 380

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|104781515|ref|YP_608013.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95110502|emb|CAK15210.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 428

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ +E      G +  ++ D+G G+ ++E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAHLEVRHEQ-GVTQIRVLDDGPGIPADELDEVLKPFY 380


>gi|150390976|ref|YP_001321025.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950838|gb|ABR49366.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 586

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 24  SIAIKELIENSLDA-----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           S  I  L+ N++DA         ++ VI  G K     I DNG GM  E +    Q + +
Sbjct: 478 SQVILNLVNNAIDAMKDNKGIREIKIVIHEGEKDVQVTIEDNGGGMPKEIVDRIFQPYVS 537

Query: 78  SK 79
           +K
Sbjct: 538 TK 539


>gi|322373420|ref|ZP_08047956.1| DNA gyrase, B subunit [Streptococcus sp. C150]
 gi|321278462|gb|EFX55531.1| DNA gyrase, B subunit [Streptococcus sp. C150]
          Length = 650

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  I     +   + D+G G+ 
Sbjct: 51 EIVDNSIDEALAGFATHIQVFIEPD--NSITVVDDGRGIP 88


>gi|313625793|gb|EFR95411.1| DNA gyrase subunit B [Listeria innocua FSL J1-023]
          Length = 386

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|312880510|ref|ZP_07740310.1| signal transduction histidine kinase regulating citrate/malate
          metabolism [Aminomonas paucivorans DSM 12260]
 gi|310783801|gb|EFQ24199.1| signal transduction histidine kinase regulating citrate/malate
          metabolism [Aminomonas paucivorans DSM 12260]
          Length = 182

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS++A +  V   +    +      ++ D+G GM    +        T
Sbjct: 14 ENSVNAGARNVTLQVEENRRDNRLRLEVQDDGCGMEERVLRQVTDPFYT 62


>gi|126665018|ref|ZP_01736001.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Marinobacter sp. ELB17]
 gi|126630388|gb|EBA01003.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Marinobacter sp. ELB17]
          Length = 410

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NS++A ++ V   +   G       +++DNG G      P   +   T+K
Sbjct: 314 LVNNSIEAGATSVRLNLR--GCDHELAIEVSDNGPGFDPAMAPRLQEAFYTTK 364


>gi|88802816|ref|ZP_01118343.1| DNA topoisomerase IV subunit B [Polaribacter irgensii 23-P]
 gi|88781674|gb|EAR12852.1| DNA topoisomerase IV subunit B [Polaribacter irgensii 23-P]
          Length = 619

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 76/245 (31%), Gaps = 37/245 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++NS+D     A    +E  I G   S   + D G G+   ++   V +  T    
Sbjct: 46  VKEVLDNSIDEYVMGAG-KNIEISIQG---SKVTVRDFGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -SKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            SK    S   + + T      A+ ++ +   +   SR  ++ +      + E+   +  
Sbjct: 102 DSKAFKKSVGLNGVGTK-----AVNALSSFFRVE-SSRDGKSASAEFSQGNLEQQDFLEE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K  +     +  +++      P ++       F +
Sbjct: 156 SSRRKGTKVS-------FIPDEEIFKKYKFRNEYVAKMLKYYVYLNPGLTIIFNGEKFFS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
               +  +   +   +    I  + G+D          + +E       G          
Sbjct: 209 ENGLKDLLEDNNHQEDMLYPIIHLKGDDIEVAITHSKTQYSEEYHSFVNG--QHTTQGGT 266

Query: 249 QFYVF 253
               F
Sbjct: 267 HQTAF 271


>gi|313678724|ref|YP_004056464.1| DNA topoisomerase IV subunit B [Mycoplasma bovis PG45]
 gi|312950293|gb|ADR24888.1| DNA topoisomerase IV, B subunit [Mycoplasma bovis PG45]
          Length = 638

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+++NS+D   A  ++ +  ++   G     ++DNG G+           + +   + H 
Sbjct: 42  EIVDNSIDEALAGEANEIAVILKNDG--SVVVSDNGRGIPVGKTPSGKSAVELVFTELHA 99

Query: 77  TSKISD 82
             K ++
Sbjct: 100 GGKFNE 105


>gi|312127642|ref|YP_003992516.1| histidine kinase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777661|gb|ADQ07147.1| histidine kinase [Caldicellulosiruptor hydrothermalis 108]
          Length = 183

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          L++NS++A++S V+  IA   K       I DNG G+  + I        T
Sbjct: 11 LVQNSIEADASLVKIEIAEDLKEDLFTITIEDNGRGIPQDVIDKVTDPFYT 61


>gi|242279338|ref|YP_002991467.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122232|gb|ACS79928.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 30  LIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           L++N++ A   R E VI     GGK   ++ DNG G+  +++P       T+K  ++ + 
Sbjct: 204 LLKNAIQAVGHRGEIVISSRREGGKVVVRVADNGVGIAEDKLPHIFTPFFTTKSPEEGTG 263

Query: 87  IH 88
           I 
Sbjct: 264 IG 265


>gi|169825626|ref|YP_001695784.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41]
 gi|168990114|gb|ACA37654.1| DNA gyrase subunit B [Lysinibacillus sphaericus C3-41]
          Length = 644

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + ++  I    +++ ++ DNG G+ 
Sbjct: 52 EIVDNSIDEALAGFCTDIQVTIEK--ENWIRVEDNGRGIP 89


>gi|126651999|ref|ZP_01724191.1| DNA gyrase subunit B [Bacillus sp. B14905]
 gi|126591268|gb|EAZ85377.1| DNA gyrase subunit B [Bacillus sp. B14905]
          Length = 644

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + ++  I    +++ ++ DNG G+ 
Sbjct: 52 EIVDNSIDEALAGFCTDIQVTIEK--ENWIRVEDNGRGIP 89


>gi|114767141|ref|ZP_01446021.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Pelagibaca bermudensis HTCC2601]
 gi|114540703|gb|EAU43771.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius sp. HTCC2601]
          Length = 567

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N++DA  ++      +E ++A G  +   + DNG G+  E++    +  
Sbjct: 457 RIEQVLVNLLRNAIDA--TKSVAQPELEIILASGETATLSVRDNGHGI--EDMDALFEPF 512

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
            T+K   D + +      G A+ S G V+ L
Sbjct: 513 YTTKQPGDGTGL------GLAISS-GIVADL 536


>gi|114706874|ref|ZP_01439774.1| Sensory Transduction Histidine Kinase [Fulvimarina pelagi HTCC2506]
 gi|114537822|gb|EAU40946.1| Sensory Transduction Histidine Kinase [Fulvimarina pelagi HTCC2506]
          Length = 471

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 30  LIENSL------DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L      D  +++V   I      +   ++DNG G+ +++    ++R  
Sbjct: 360 LVDNALKYGRSPD-GATKVTIAIEETPNAARICVSDNGAGIPADKRSRVLERFY 412


>gi|149907751|ref|ZP_01896498.1| DNA topoisomerase IV subunit B [Moritella sp. PE36]
 gi|149809421|gb|EDM69350.1| DNA topoisomerase IV subunit B [Moritella sp. PE36]
          Length = 629

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 73/205 (35%), Gaps = 25/205 (12%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +  +   +        +++D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHAQSITVTLHAD--QSLEVSDDGRGMPVDIHPVEGVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
           + ++ + H   K S+D     + G  G  +  + A+S  + +  R        QIA    
Sbjct: 89  LILS-KLHAGGKFSNDSYQ-FSGGLHGVGISVVNALSKRVEITIRRGGQI--YQIAFEHG 144

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           +  S   V    G       + F  P   ++  S       +   +R  A+  P +S  F
Sbjct: 145 EKVSELEVIGTIGIRTTGTKVHF-WPDP-SYFDSGNFSAKRLVHNLRAKAVLCPGLSIKF 202

Query: 187 STIKSNRYKMNFQSTNGNFPERISQ 211
                   + +         + + +
Sbjct: 203 --DDKVNKEKHAWCFEKGLEDYLME 225


>gi|118575833|ref|YP_875576.1| DNA mismatch repair enzyme [Cenarchaeum symbiosum A]
 gi|118194354|gb|ABK77272.1| DNA mismatch repair enzyme [Cenarchaeum symbiosum A]
          Length = 572

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 22 RPSIAIKELIENSLDAESSRVET----VIAGG------GKSFFQITDNGFGMTSEEI 68
           P+ AI E+I+NS +A++ ++E      I               +TDNG GMT E++
Sbjct: 8  NPAYAIAEIIDNSFEADADKIEIFCKDKIEDSLANMVERMHEIIVTDNGTGMTKEDL 64


>gi|301633042|ref|XP_002945587.1| PREDICTED: DNA gyrase subunit B-like, partial [Xenopus (Silurana)
          tropicalis]
          Length = 506

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          +R    + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 6  QRLHHLVYEVVDNSIDEALAGYCDHIEVAINED--NSITVQDNGRGIPVD 53


>gi|218294842|ref|ZP_03495696.1| histidine kinase [Thermus aquaticus Y51MC23]
 gi|218244750|gb|EED11274.1| histidine kinase [Thermus aquaticus Y51MC23]
          Length = 407

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIP 69
           +R    +  L+ N+L A + RV       G +   ++ D+G G+  E +P
Sbjct: 355 DRLHQVLANLVSNALKAGAKRVWLRAFDLGDRVVVRVEDDGEGIPPEHLP 404


>gi|78707365|gb|ABB46488.1| DNA gyrase subunit B [Acholeplasma pleciae]
          Length = 587

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 23 EIVDNSIDEALGGYADEITIEILKG--EIIRVTDNGRGIPVD 62


>gi|30088962|gb|AAP13529.1| DNA gyrase subunit B [Acholeplasma pleciae]
          Length = 536

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 13 EIVDNSIDEALGGYADEITIEILKG--EIIRVTDNGRGIPVD 52


>gi|85703008|ref|ZP_01034112.1| hypothetical protein ROS217_19742 [Roseovarius sp. 217]
 gi|85671936|gb|EAQ26793.1| hypothetical protein ROS217_19742 [Roseovarius sp. 217]
          Length = 797

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 28/205 (13%)

Query: 26  AIKELIENSLD-------AESS----RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAV 72
            + EL++N++D       A SS    +V+  +  A    +  +I DNG GMT + +  AV
Sbjct: 37  CVAELVDNAVDGFLKESRAGSSIAGAKVDVHLPQADAPAATLRIIDNGPGMTPDMLERAV 96

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVR 132
           +   +     D   +   GF   A   +G+V+ +    +  +   G  I     ++    
Sbjct: 97  RAGWSGNNPIDSLGLFGMGFN-IATARLGSVTEVWTTRKGEREWHGLLIDFDKLRLQRHF 155

Query: 133 PVAM---------NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK-- 181
                          GT + ++ L      R    K+               ++  P+  
Sbjct: 156 RTPRLSRAKADPEQHGTEITIKQL--KPEQRKWLAKNANQTAMRKRLAQAYSSMLRPRGT 213

Query: 182 -VSFTFSTIKSNRYKMNFQSTNGNF 205
            +SF                 N + 
Sbjct: 214 PISFELYLNHKRVEARRHCLWNEDR 238


>gi|329770365|ref|ZP_08261747.1| DNA gyrase subunit B [Gemella sanguinis M325]
 gi|328836488|gb|EGF86148.1| DNA gyrase subunit B [Gemella sanguinis M325]
          Length = 638

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I     ++ ++ DNG G+  +
Sbjct: 46 EIVDNSIDEALAGHCDTITVAIEKD--NWIRVEDNGRGIPID 85


>gi|313640123|gb|EFS04742.1| DNA gyrase, B subunit [Listeria seeligeri FSL S4-171]
          Length = 107

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|183601375|ref|ZP_02962745.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          HN019]
 gi|219683430|ref|YP_002469813.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|241191126|ref|YP_002968520.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          Bl-04]
 gi|241196532|ref|YP_002970087.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
          10140]
 gi|183218981|gb|EDT89622.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          HN019]
 gi|219621080|gb|ACL29237.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|240249518|gb|ACS46458.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          Bl-04]
 gi|240251086|gb|ACS48025.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis DSM
          10140]
 gi|289178872|gb|ADC86118.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis
          BB-12]
 gi|295794115|gb|ADG33650.1| DNA gyrase subunit B [Bifidobacterium animalis subsp. lactis V9]
          Length = 779

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + + +   +   G    ++ DNG G+  +
Sbjct: 45 EIIDNSVDEALAGACTHIVVTLHEDG--SIEVADNGRGIPVD 84


>gi|149003441|ref|ZP_01828330.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
 gi|147758624|gb|EDK65622.1| DNA gyrase subunit B [Streptococcus pneumoniae SP14-BS69]
          Length = 128

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|300742652|ref|ZP_07072673.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
 gi|300381837|gb|EFJ78399.1| DNA gyrase, B subunit [Rothia dentocariosa M567]
          Length = 676

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E P
Sbjct: 43 VYEVVDNSVDEALAGYASHIEVTIQADGG---VRVQDDGRGIPVDEHP 87


>gi|311112567|ref|YP_003983789.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia
          dentocariosa ATCC 17931]
 gi|310944061|gb|ADP40355.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rothia
          dentocariosa ATCC 17931]
          Length = 676

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +S +E  I   GG    ++ D+G G+  +E P
Sbjct: 43 VYEVVDNSVDEALAGYASHIEVTIQADGG---VRVQDDGRGIPVDEHP 87


>gi|170717616|ref|YP_001784698.1| histidine kinase [Haemophilus somnus 2336]
 gi|168825745|gb|ACA31116.1| histidine kinase [Haemophilus somnus 2336]
          Length = 554

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 33  NSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+L A++S ++ ++    K    +I DNG G    E+        TSK
Sbjct: 463 NALQAKASMIDIIVEKEQKELKIRILDNGTGFQQIELDFPFVPFRTSK 510


>gi|294495525|ref|YP_003542018.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
 gi|292666524|gb|ADE36373.1| DNA gyrase subunit B [Methanohalophilus mahii DSM 5219]
          Length = 634

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I   G     + D+G G+ ++
Sbjct: 41 VYEVVDNSIDEALAGYCTSIDVSINRDG--SVTVRDDGRGIPTD 82


>gi|295689928|ref|YP_003593621.1| hypothetical protein Cseg_2549 [Caulobacter segnis ATCC 21756]
 gi|295431831|gb|ADG11003.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756]
          Length = 642

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFG 62
          R L +       AG II   ++A+ EL+ N+ DA ++ V      G +   F I DNG G
Sbjct: 13 RFLDKH------AGAIISDLTVALVELVANAWDAYATEVHIQWPDGTQDRPFSIRDNGKG 66

Query: 63 MTSEEIP 69
          +T E+  
Sbjct: 67 LTGEQFA 73


>gi|255971553|ref|ZP_05422139.1| DNA gyrase subunit B [Enterococcus faecalis T1]
 gi|255962571|gb|EET95047.1| DNA gyrase subunit B [Enterococcus faecalis T1]
          Length = 649

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  ++ +I         + D+G G+ 
Sbjct: 51 EIVDNSIDEALAGFAKSIQVIIEPD--DSITVIDDGRGIP 88


>gi|300862234|ref|ZP_07108314.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300848759|gb|EFK76516.1| DNA gyrase, B subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 649

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  ++ +I         + D+G G+ 
Sbjct: 51 EIVDNSIDEALAGFAKSIQVIIEPD--DSITVIDDGRGIP 88


>gi|150026379|ref|YP_001297205.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772920|emb|CAL44404.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 381

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA      +  +I    K+   +ITD+G G+   +     +   T+K
Sbjct: 287 LVKNAIDAMKGRGSIAIIIEDDWKTTKIKITDSGKGIPKNQFKTIFEPGFTTK 339


>gi|254225218|ref|ZP_04918831.1| inner membrane ABC transporter permease protein YejB [Vibrio
          cholerae V51]
 gi|125622317|gb|EAZ50638.1| inner membrane ABC transporter permease protein YejB [Vibrio
          cholerae V51]
          Length = 998

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E I     AI EL +N+ DA++  V   I  G +S   I DNGFGM++ +         T
Sbjct: 21 EQIADCPTAISELWKNAYDADADEVALHILDGEQSVAAIVDNGFGMSATDFEEKWLTVGT 80

Query: 78 -SKISDDFSN 86
           SKI  +  N
Sbjct: 81 DSKIESEVDN 90


>gi|113461043|ref|YP_719110.1| sensor kinase [Haemophilus somnus 129PT]
 gi|112823086|gb|ABI25175.1| sensor kinase [Haemophilus somnus 129PT]
          Length = 565

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 33  NSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+L A++S ++ ++    K    +I DNG G    E+        TSK
Sbjct: 474 NALQAKASMIDIIVEKEQKELKIRILDNGTGFQQIELDFPFVPFRTSK 521


>gi|29374666|ref|NP_813818.1| DNA gyrase subunit B [Enterococcus faecalis V583]
 gi|257418838|ref|ZP_05595832.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
 gi|29342124|gb|AAO79890.1| DNA gyrase, B subunit [Enterococcus faecalis V583]
 gi|257160666|gb|EEU90626.1| DNA gyrase B gyrB [Enterococcus faecalis T11]
          Length = 642

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  ++ +I         + D+G G+ 
Sbjct: 44 EIVDNSIDEALAGFAKSIQVIIEPD--DSITVIDDGRGIP 81


>gi|227518104|ref|ZP_03948153.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
          TX0104]
 gi|227555689|ref|ZP_03985736.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
 gi|229547125|ref|ZP_04435850.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
          TX1322]
 gi|229550695|ref|ZP_04439420.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
          29200]
 gi|255974526|ref|ZP_05425112.1| subunit B [Enterococcus faecalis T2]
 gi|256618523|ref|ZP_05475369.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
 gi|256761858|ref|ZP_05502438.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
 gi|256854985|ref|ZP_05560346.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
 gi|256957011|ref|ZP_05561182.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
 gi|256960820|ref|ZP_05564991.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
 gi|256963987|ref|ZP_05568158.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
 gi|257078688|ref|ZP_05573049.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
 gi|257081351|ref|ZP_05575712.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
 gi|257084008|ref|ZP_05578369.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
 gi|257087838|ref|ZP_05582199.1| DNA gyrase subunit B [Enterococcus faecalis D6]
 gi|257088490|ref|ZP_05582851.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
 gi|257417430|ref|ZP_05594424.1| DNA gyrase subunit B [Enterococcus faecalis AR01/DG]
 gi|257421347|ref|ZP_05598337.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
 gi|293382658|ref|ZP_06628586.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
 gi|293387930|ref|ZP_06632466.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
 gi|294781253|ref|ZP_06746600.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
 gi|307268921|ref|ZP_07550285.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
 gi|307274016|ref|ZP_07555226.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
 gi|307276495|ref|ZP_07557615.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
 gi|307284063|ref|ZP_07564233.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
 gi|307287177|ref|ZP_07567248.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
 gi|307296594|ref|ZP_07576414.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
 gi|312901292|ref|ZP_07760575.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
 gi|312903111|ref|ZP_07762292.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
 gi|312908810|ref|ZP_07767749.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
 gi|312951716|ref|ZP_07770610.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
 gi|312979548|ref|ZP_07791230.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
 gi|15982567|dbj|BAB69478.1| DNA gyrase B subunit [Enterococcus faecalis]
 gi|227074438|gb|EEI12401.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
          TX0104]
 gi|227175199|gb|EEI56171.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis HH22]
 gi|229304128|gb|EEN70124.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
          29200]
 gi|229307707|gb|EEN73694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
          TX1322]
 gi|255967398|gb|EET98020.1| subunit B [Enterococcus faecalis T2]
 gi|256598050|gb|EEU17226.1| DNA gyrase subunit B [Enterococcus faecalis ATCC 4200]
 gi|256683109|gb|EEU22804.1| hypothetical protein EFCG_02340 [Enterococcus faecalis T3]
 gi|256709498|gb|EEU24545.1| hypothetical protein EFYG_02228 [Enterococcus faecalis T8]
 gi|256947507|gb|EEU64139.1| DNA gyrase subunit B [Enterococcus faecalis DS5]
 gi|256951316|gb|EEU67948.1| hypothetical protein EFGG_02710 [Enterococcus faecalis Merz96]
 gi|256954483|gb|EEU71115.1| hypothetical protein EFHG_02347 [Enterococcus faecalis HIP11704]
 gi|256986718|gb|EEU74020.1| hypothetical protein EFIG_02258 [Enterococcus faecalis JH1]
 gi|256989381|gb|EEU76683.1| DNA gyrase subunit B [Enterococcus faecalis E1Sol]
 gi|256992038|gb|EEU79340.1| DNA gyrase subunit B [Enterococcus faecalis Fly1]
 gi|256995868|gb|EEU83170.1| DNA gyrase subunit B [Enterococcus faecalis D6]
 gi|256997302|gb|EEU83822.1| DNA gyrase B subunit gyrB [Enterococcus faecalis CH188]
 gi|257159258|gb|EEU89218.1| DNA gyrase subunit B [Enterococcus faecalis ARO1/DG]
 gi|257163171|gb|EEU93131.1| DNA gyrase subunit B gyrB [Enterococcus faecalis X98]
 gi|291079964|gb|EFE17328.1| DNA gyrase, B subunit [Enterococcus faecalis R712]
 gi|291082667|gb|EFE19630.1| DNA gyrase, B subunit [Enterococcus faecalis S613]
 gi|294451716|gb|EFG20171.1| DNA gyrase, B subunit [Enterococcus faecalis PC1.1]
 gi|295112344|emb|CBL30981.1| DNA gyrase subunit B [Enterococcus sp. 7L76]
 gi|306495930|gb|EFM65518.1| DNA gyrase, B subunit [Enterococcus faecalis TX0411]
 gi|306501775|gb|EFM71066.1| DNA gyrase, B subunit [Enterococcus faecalis TX0109]
 gi|306503434|gb|EFM72683.1| DNA gyrase, B subunit [Enterococcus faecalis TX0860]
 gi|306506822|gb|EFM75972.1| DNA gyrase, B subunit [Enterococcus faecalis TX2134]
 gi|306509324|gb|EFM78384.1| DNA gyrase, B subunit [Enterococcus faecalis TX0855]
 gi|306514729|gb|EFM83280.1| DNA gyrase, B subunit [Enterococcus faecalis TX4248]
 gi|310625248|gb|EFQ08531.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 512]
 gi|310630289|gb|EFQ13572.1| DNA gyrase, B subunit [Enterococcus faecalis TX0102]
 gi|310633502|gb|EFQ16785.1| DNA gyrase, B subunit [Enterococcus faecalis TX0635]
 gi|311287730|gb|EFQ66286.1| DNA gyrase, B subunit [Enterococcus faecalis DAPTO 516]
 gi|311291669|gb|EFQ70225.1| DNA gyrase, B subunit [Enterococcus faecalis TX0470]
 gi|315026673|gb|EFT38605.1| DNA gyrase, B subunit [Enterococcus faecalis TX2137]
 gi|315030118|gb|EFT42050.1| DNA gyrase, B subunit [Enterococcus faecalis TX4000]
 gi|315033552|gb|EFT45484.1| DNA gyrase, B subunit [Enterococcus faecalis TX0017]
 gi|315036375|gb|EFT48307.1| DNA gyrase, B subunit [Enterococcus faecalis TX0027]
 gi|315143591|gb|EFT87607.1| DNA gyrase, B subunit [Enterococcus faecalis TX2141]
 gi|315148271|gb|EFT92287.1| DNA gyrase, B subunit [Enterococcus faecalis TX4244]
 gi|315151295|gb|EFT95311.1| DNA gyrase, B subunit [Enterococcus faecalis TX0012]
 gi|315153721|gb|EFT97737.1| DNA gyrase, B subunit [Enterococcus faecalis TX0031]
 gi|315155119|gb|EFT99135.1| DNA gyrase, B subunit [Enterococcus faecalis TX0043]
 gi|315158751|gb|EFU02768.1| DNA gyrase, B subunit [Enterococcus faecalis TX0312]
 gi|315163335|gb|EFU07352.1| DNA gyrase, B subunit [Enterococcus faecalis TX0645]
 gi|315165723|gb|EFU09740.1| DNA gyrase, B subunit [Enterococcus faecalis TX1302]
 gi|315168224|gb|EFU12241.1| DNA gyrase, B subunit [Enterococcus faecalis TX1341]
 gi|315170508|gb|EFU14525.1| DNA gyrase, B subunit [Enterococcus faecalis TX1342]
 gi|315174178|gb|EFU18195.1| DNA gyrase, B subunit [Enterococcus faecalis TX1346]
 gi|315573987|gb|EFU86178.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309B]
 gi|315578843|gb|EFU91034.1| DNA gyrase, B subunit [Enterococcus faecalis TX0630]
 gi|315581938|gb|EFU94129.1| DNA gyrase, B subunit [Enterococcus faecalis TX0309A]
 gi|323479244|gb|ADX78683.1| DNA gyrase, B subunit [Enterococcus faecalis 62]
 gi|327533858|gb|AEA92692.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
          faecalis OG1RF]
 gi|329576322|gb|EGG57837.1| DNA gyrase, B subunit [Enterococcus faecalis TX1467]
          Length = 649

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  ++ +I         + D+G G+ 
Sbjct: 51 EIVDNSIDEALAGFAKSIQVIIEPD--DSITVIDDGRGIP 88


>gi|317054739|ref|YP_004103206.1| DNA gyrase subunit B [Ruminococcus albus 7]
 gi|315447008|gb|ADU20572.1| DNA gyrase, B subunit [Ruminococcus albus 7]
          Length = 662

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A   + +   I  G     ++ DNG G+ 
Sbjct: 60 VYEIVDNAIDEALAGYCTEIIVDILPG--DVIRVVDNGRGIP 99


>gi|325678556|ref|ZP_08158167.1| DNA gyrase, B subunit [Ruminococcus albus 8]
 gi|324109775|gb|EGC03980.1| DNA gyrase, B subunit [Ruminococcus albus 8]
          Length = 665

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++N++D   A   + +   I  G     ++ DNG G+ 
Sbjct: 63  VYEIVDNAIDEALAGYCTEIIVDILPG--DVIRVVDNGRGIP 102


>gi|296109554|ref|YP_003616503.1| DNA topoisomerase VI, B subunit [Methanocaldococcus infernus ME]
 gi|295434368|gb|ADG13539.1| DNA topoisomerase VI, B subunit [Methanocaldococcus infernus ME]
          Length = 656

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 20  IERPSIAIKELIENSLDA--ES---SRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
           I   +  + EL+ NSLDA  E+     V+  I   G       + DNG G+  E +P   
Sbjct: 30  IRSMTTIVHELVTNSLDACEEALILPEVKVEIEKLGTDHYRVAVEDNGPGIPPEFVPKVF 89

Query: 73  QR-HCTSKISDDFSNIHTFG 91
            +    SK+     +I + G
Sbjct: 90  GKMLAGSKMH---RHIQSRG 106


>gi|225016753|ref|ZP_03705945.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum
          DSM 5476]
 gi|224950421|gb|EEG31630.1| hypothetical protein CLOSTMETH_00665 [Clostridium methylpentosum
          DSM 5476]
          Length = 642

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A   ++++  I  G      + DNG G+ 
Sbjct: 42 VYEIVDNAIDEALAGFCTQIDVEILPGNI--IHVVDNGRGIP 81


>gi|327192962|gb|EGE59878.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium etli CNPAF512]
          Length = 447

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 26  AIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ N++D    S  +   ++  G     + D G G+ +E   +  +   
Sbjct: 353 AVSNLVRNAIDHGGGSGMITVSVSASGGGRISVADEGPGIPAEHRELVFEPFY 405


>gi|332157796|ref|YP_004423075.1| DNA topoisomerase VI subunit B [Pyrococcus sp. NA2]
 gi|331033259|gb|AEC51071.1| DNA topoisomerase VI subunit B [Pyrococcus sp. NA2]
          Length = 564

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I E + NSLDA  E+     +   I   GK      + DNG G+  E IP   
Sbjct: 33 IRSLTTIIHEAVTNSLDACEEAGILPYIRVEIEELGKEHYKIIVEDNGPGIPEEYIPHVF 92


>gi|300726297|ref|ZP_07059750.1| DNA gyrase, B subunit [Prevotella bryantii B14]
 gi|299776494|gb|EFI73051.1| DNA gyrase, B subunit [Prevotella bryantii B14]
          Length = 658

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A   + V+  +   G     + DNG G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCTDVQVTVNEDG--SITVEDNGRGIPVDEHKKL 91


>gi|317126747|ref|YP_004093029.1| DNA gyrase subunit beta [Bacillus cellulosilyticus DSM 2522]
 gi|315471695|gb|ADU28298.1| DNA gyrase, B subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 640

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   + DNG G+ 
Sbjct: 47 EIVDNSIDEAMAGYCDTITVTIEED--NSITVEDNGRGIP 84


>gi|254672434|emb|CBA05804.1| hypothetical protein predicted by Glimmer/Critica [Neisseria
          meningitidis alpha275]
          Length = 32

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSI 25
          +I  L + ++NQIAAGE++ERP  
Sbjct: 3  RIAALPDHLVNQIAAGEVVERPCQ 26


>gi|23978247|dbj|BAC21116.1| DNA gyrase B subunit [Stanieria cyanosphaera str. PCC 7437]
          Length = 393

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  +   G    ++TD+G G+ 
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEIELNADG--SVRVTDDGRGIP 49


>gi|319645217|ref|ZP_07999450.1| hypothetical protein HMPREF1012_00483 [Bacillus sp. BT1B_CT2]
 gi|317393026|gb|EFV73820.1| hypothetical protein HMPREF1012_00483 [Bacillus sp. BT1B_CT2]
          Length = 181

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A  +  V+   A  G     + D+G G+  E++P   +R  
Sbjct: 75  LIDNAIRHTNAGGTVHVDVQSAESGLK-IAVKDSGSGIPEEDLPFIFERFY 124


>gi|300692696|ref|YP_003753691.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           PSI07]
 gi|299079756|emb|CBJ52432.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           PSI07]
          Length = 665

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAESSR-------VETVI--AGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+LDA ++        ++  I  A G  +     + DNG G+ ++ +P   +   T+
Sbjct: 554 LIGNALDAIAANDLPRPGHIDIDIGPADGAPTQLCIVVRDNGHGIPADAMPHLFEPFFTT 613

Query: 79  K 79
           K
Sbjct: 614 K 614


>gi|285017938|ref|YP_003375649.1| DNA topoisomerase iv subunit b protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473156|emb|CBA15662.1| probable dna topoisomerase iv subunit b protein [Xanthomonas
           albilineans]
          Length = 629

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+N++D   A  +  +E  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNAVDEALAGHARHIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKISGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K SD
Sbjct: 89  LILTRLHAGGKFSD 102


>gi|218246132|ref|YP_002371503.1| DNA gyrase subunit B [Cyanothece sp. PCC 8801]
 gi|257059181|ref|YP_003137069.1| DNA gyrase subunit B [Cyanothece sp. PCC 8802]
 gi|218166610|gb|ACK65347.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8801]
 gi|256589347|gb|ACV00234.1| DNA gyrase, B subunit [Cyanothece sp. PCC 8802]
          Length = 641

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 40 VYEVVDNSIDEALAGYCTHIEIDINSDG--SVTVTDDGRGIPTD 81


>gi|126541050|emb|CAM46137.1| microrchidia 4 [Mus musculus]
          Length = 273

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|12856723|dbj|BAB30759.1| unnamed protein product [Mus musculus]
          Length = 797

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 131 TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 190

Query: 78  SK 79
            K
Sbjct: 191 DK 192


>gi|26339370|dbj|BAC33356.1| unnamed protein product [Mus musculus]
          Length = 173

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|229083320|ref|ZP_04215682.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
 gi|228699995|gb|EEL52618.1| DNA gyrase subunit B [Bacillus cereus Rock3-44]
          Length = 640

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVAIEED--NSIRVTDNGRGIP 84


>gi|162446893|ref|YP_001620025.1| DNA gyrase subunit B [Acholeplasma laidlawii PG-8A]
 gi|161985000|gb|ABX80649.1| DNA gyrase, subunit B [Acholeplasma laidlawii PG-8A]
          Length = 635

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 45 EIVDNSIDEALGGYADEITIEILKG--EVIRVTDNGRGIPVD 84


>gi|78707357|gb|ABB46484.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 41 EIVDNSIDEALGGYADEITIEILKG--EVIRVTDNGRGIPVD 80


>gi|78707355|gb|ABB46483.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 41 EIVDNSIDEALGGYADEITIEILKG--EVIRVTDNGRGIPVD 80


>gi|78707359|gb|ABB46485.1| DNA gyrase subunit B [Acholeplasma laidlawii]
 gi|78707361|gb|ABB46486.1| DNA gyrase subunit B [Acholeplasma laidlawii]
 gi|78707363|gb|ABB46487.1| DNA gyrase subunit B [Acholeplasma laidlawii]
          Length = 631

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 41 EIVDNSIDEALGGYADEITIEILKG--EVIRVTDNGRGIPVD 80


>gi|5817861|gb|AAD52967.1|AF167102_1 DNA gyrase beta subunit [Acholeplasma laidlawii]
          Length = 615

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 45 EIVDNSIDEALCGYADEITIEILKG--EVIRVTDNGRGIPVD 84


>gi|95929932|ref|ZP_01312672.1| GAF sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133901|gb|EAT15560.1| GAF sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 549

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 22/88 (25%)

Query: 5   KLSEKIIN--QIAAGEIIERPSIAIKELIENSLDA------ESSRVETVI---AGGGKSF 53
           KL     N  QI   +++         L+ N+ DA      E   +          GK +
Sbjct: 426 KLPTMTANGPQI--QQVLTNL------LV-NARDALDSLNDEEKVIHVRTHVREKDGKRW 476

Query: 54  --FQITDNGFGMTSEEIPMAVQRHCTSK 79
               + DNG G+  +++        TSK
Sbjct: 477 AIISVEDNGCGIEEKDLQKIFTPFFTSK 504


>gi|238855510|ref|ZP_04645815.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
 gi|260665214|ref|ZP_05866063.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931536|ref|ZP_06337035.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|313472767|ref|ZP_07813255.1| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
 gi|238831876|gb|EEQ24208.1| DNA gyrase, B subunit [Lactobacillus jensenii 269-3]
 gi|260560951|gb|EEX26926.1| DNA gyrase, B subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304343|gb|EFA96446.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|313448866|gb|EEQ68253.2| DNA gyrase, B subunit [Lactobacillus jensenii 1153]
          Length = 651

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +   G     + D+G G+  +
Sbjct: 55 EIIDNGIDECLAGFATKIEVTVEEDG--SVTVQDDGRGIPVD 94


>gi|256851678|ref|ZP_05557066.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661605|ref|ZP_05862517.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934238|ref|ZP_06339515.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|297205287|ref|ZP_06922683.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          jensenii JV-V16]
 gi|256615636|gb|EEU20825.1| DNA gyrase, B subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547662|gb|EEX23640.1| DNA gyrase, B subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301712|gb|EFA93979.1| DNA gyrase, B subunit [Lactobacillus jensenii 208-1]
 gi|297149865|gb|EFH30162.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          jensenii JV-V16]
          Length = 651

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +   G     + D+G G+  +
Sbjct: 55 EIIDNGIDECLAGFATKIEVTVEEDG--SVTVQDDGRGIPVD 94


>gi|227112464|ref|ZP_03826120.1| hypothetical protein PcarbP_05847 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1011

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 14/194 (7%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRHCTSK---- 79
            AI EL +N+ DA +S VE       ++   + D+G GMT E+     +    +SK    
Sbjct: 24  TAIHELFKNAHDAYASNVEIDFFE-SQNLLTLRDDGIGMTKEDFIGKWLTIGTSSKLGIN 82

Query: 80  -----ISDDFSNIHTFGFRGEALPSIGAVSHLTLM-SRPPQNNTGAQIAISGEKISSVRP 133
                I +        G +G    +I ++  L L+ SR  +++    + ++    +    
Sbjct: 83  RKPVFIPEGMDERPLMGEKGIGRLAIASIGRLVLVLSRAIRDDGMHDMVVALVHWTQFEI 142

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
             +N    + +    F +  +L      Q  +N I + + ++    P+  +         
Sbjct: 143 PEINIS-DIVIPVRTFNL-GKLPSQDDIQSMSNEIINNLDKLEEKIPEELYNIIKNDLCS 200

Query: 194 YKMNFQSTNGNFPE 207
           +  + +    N   
Sbjct: 201 FDFSPEMLFNNLKN 214


>gi|226226556|ref|YP_002760662.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
            T-27]
 gi|226089747|dbj|BAH38192.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
            T-27]
          Length = 1389

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 24/73 (32%)

Query: 30   LIENSLDAESSRVETVIAG----GGKSF-----------------FQITDNGFGMTSEEI 68
            L+EN+  A +  V   ++     GG                     ++TD+G G+  E +
Sbjct: 1264 LLENARLAGARTVTVRVSPASAPGGYDHETPHLPRLADERSHGLAIEVTDDGVGIAPETL 1323

Query: 69   PMAVQRHC---TS 78
            P   + H    TS
Sbjct: 1324 PRVFEPHFSTRTS 1336


>gi|196232356|ref|ZP_03131210.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
          Ellin428]
 gi|196223724|gb|EDY18240.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
          Ellin428]
          Length = 853

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 21 ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ER     + E+++NS+D   A   + ++  I   G     I DNG G+  +
Sbjct: 45 ERALHHCVSEVLDNSVDEFLAGYCTHIDVTIHSDG--SISIRDNGRGIPVD 93


>gi|78043837|ref|YP_361487.1| DNA gyrase subunit B [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995952|gb|ABB14851.1| DNA gyrase, B subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 635

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R+E +I   G     + DNG G+  +
Sbjct: 44 VYEVVDNSIDEALAGFCNRIEVIIHKDG--SITVADNGRGIPVD 85


>gi|68534224|gb|AAH98483.1| Morc4 protein [Mus musculus]
          Length = 480

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|7387745|sp|Q9ZAQ6|GYRB_MYCAT RecName: Full=DNA gyrase subunit B
 gi|4099106|gb|AAD09234.1| gyrase B [Mycoplasma arthritidis]
          Length = 638

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  +     +  ++ DNG GM  +
Sbjct: 46 EIVDNSVDEAMAGFATNIEVKLHPN--NEIEVIDNGRGMPVD 85


>gi|260433833|ref|ZP_05787804.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417661|gb|EEX10920.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 590

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      VE ++A G  +   + DNG G+  E+I    +   T+K
Sbjct: 487 LLRNALDA--TKSVAEPEVEIILAAGETAVLAVRDNGHGI--EDIENLFEPFYTTK 538


>gi|118577294|ref|YP_899534.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
 gi|118504799|gb|ABL01281.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
          Length = 456

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ER S  +  LI N+L A +      + G    GG +   + D G G+ +EE+P+  +R  
Sbjct: 343 ERLSQILINLISNALKATAPGGTITLEGKRYPGGCT-ISVIDTGCGIATEELPLIFERFY 401


>gi|309779232|ref|ZP_07673995.1| C4-dicarboxylate transport sensor protein DctB [Ralstonia sp.
           5_7_47FAA]
 gi|308922036|gb|EFP67670.1| C4-dicarboxylate transport sensor protein DctB [Ralstonia sp.
           5_7_47FAA]
          Length = 638

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 22  RPSIAIKELIENSLDAES-------SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQ 73
           R    +  LI N++DA +       S V   +    K     + D G G+ ++ +P   +
Sbjct: 524 RLEQVLVNLIRNAIDATAEAPAAESSTVRVSVEPIEKWVRITVRDFGPGIPADVLPRLFE 583

Query: 74  RHCTSKISDDFSNIHTFGFRGEALP-SIGAVSHL--TLMSRPPQNNTG 118
              T+K  DD   +   G     L  S+  +      L  R   ++ G
Sbjct: 584 PFFTTK--DDGQGLG-LG-----LAISLAIIEDFGGRLEGRNAGDDAG 623


>gi|297830380|ref|XP_002883072.1| hypothetical protein ARALYDRAFT_898105 [Arabidopsis lyrata subsp.
          lyrata]
 gi|297328912|gb|EFH59331.1| hypothetical protein ARALYDRAFT_898105 [Arabidopsis lyrata subsp.
          lyrata]
          Length = 57

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          EL++NSLDA+ + +  V+  GG    Q +++  G+    + + VQR
Sbjct: 2  ELVKNSLDADFNSISVVVKDGGVKLIQFSEDCLGIRVRFLHLRVQR 47


>gi|295091537|emb|CBK77644.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 30  LIENSLD---AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           L++N+LD   A    +E             + DNG G+  E+I    +R   SK S
Sbjct: 311 LVKNALDHTEAG-GVIEITWESTPTMLRILVYDNGSGIAPEDIHHIFKRFYRSKYS 365


>gi|296120379|ref|YP_003628157.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
          3776]
 gi|296012719|gb|ADG65958.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
          3776]
          Length = 635

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +   +   G     ++DNG G+  +
Sbjct: 41 EIVDNSVDECLAGEATEITVTLHKDG-ESCSVSDNGRGIPVD 81


>gi|197294338|ref|YP_001798879.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense]
 gi|171853665|emb|CAM11548.1| DNA gyrase beta subunit [Candidatus Phytoplasma australiense]
          Length = 662

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 12/55 (21%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  ++ +   I  G      +TDNG G+           H T K
Sbjct: 40 EIVDNSIDEALAGHANEITLEILPG--DIISVTDNGRGIP------VGIHHKTGK 86


>gi|294335677|gb|ADE62388.1| styrene sensor kinase [Pseudomonas sp. LQ26]
          Length = 979

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 20/85 (23%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA---ESSRV--------ETVIAGGGKSFF 54
           L   + ++I   +++         LI NS+DA    +  +        +  I+  G    
Sbjct: 856 LPLVLADRIQLQQVVLN-------LILNSVDAIKSAAPVIPRLSLRVSQVEIS--GCIQL 906

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSK 79
           ++ DNG G+T+ +     +   T+K
Sbjct: 907 EVEDNGCGVTAAQAERIFEPFYTTK 931


>gi|257124877|ref|YP_003162991.1| signal transduction histidine kinase [Leptotrichia buccalis
           C-1013-b]
 gi|257048816|gb|ACV38000.1| signal transduction histidine kinase [Leptotrichia buccalis
           C-1013-b]
          Length = 467

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 10/53 (18%)

Query: 26  AIKELIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPM 70
            + EL+EN +       D     +   +  G       I+D+G GM  ++   
Sbjct: 380 IVNELVENCIKHAFKKRDKG--HITIKVKRGEMKSHISISDDGIGMDEKDFEK 430


>gi|220918231|ref|YP_002493535.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956085|gb|ACL66469.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 702

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 22  RPSIAIKELIENS---LDAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R +  +  L++N+    D   +  V       G++  ++ D+G GM  E +    Q  
Sbjct: 454 RIAQVVGNLVQNAAKFTDGGGTVTVAVDATPDGRARIRVRDDGIGMPPEVLERLFQPF 511


>gi|153826434|ref|ZP_01979101.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2]
 gi|229515946|ref|ZP_04405403.1| DNA gyrase subunit B [Vibrio cholerae TMA 21]
 gi|149739820|gb|EDM54015.1| DNA gyrase, subunit B [Vibrio cholerae MZO-2]
 gi|229347046|gb|EEO12008.1| DNA gyrase subunit B [Vibrio cholerae TMA 21]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|153802491|ref|ZP_01957077.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3]
 gi|124121961|gb|EAY40704.1| DNA gyrase, subunit B [Vibrio cholerae MZO-3]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLIDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|186470766|ref|YP_001862084.1| histidine kinase [Burkholderia phymatum STM815]
 gi|184197075|gb|ACC75038.1| histidine kinase [Burkholderia phymatum STM815]
          Length = 524

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 21  ERPSIAIKELIENS----LDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R +     L++N+    LD    R+E  + A  G     ++DNG G+  EE+P   +  
Sbjct: 269 TRLAQVFGNLLDNAVKYTLDGG--RIEIDVTAEEGLVTVAVSDNGTGIAPEELPEIFELF 326

Query: 76  CTS 78
             S
Sbjct: 327 SQS 329


>gi|106734225|gb|ABF82589.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. A1]
          Length = 492

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 17 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 56


>gi|106734233|gb|ABF82593.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. TC38]
          Length = 481

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 18 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 57


>gi|106734227|gb|ABF82590.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. A19]
          Length = 488

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 18 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 57


>gi|106734229|gb|ABF82591.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. Indian
          Stream]
          Length = 493

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 18 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 57


>gi|106734223|gb|ABF82588.1| DNA topoisomerase IV subunit beta [Exiguobacterium sp. 5138]
          Length = 496

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 21 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 60


>gi|71725916|gb|AAZ39076.1| gyrase subunit B [Exiguobacterium sibiricum]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 21 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 60


>gi|71725918|gb|AAZ39077.1| gyrase subunit B [Exiguobacterium undae]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 21 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 60


>gi|71725925|gb|AAZ39080.1| gyrase subunit B [Exiguobacterium acetylicum]
          Length = 513

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 21 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 60


>gi|295090414|emb|CBK76521.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 414

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 19/65 (29%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQ-----------ITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N+LD            GG    +           ++DNG G++ ++I    +R   S
Sbjct: 311 LIKNALD--------HTERGGLIHIEWKHSPDMLRLSVSDNGCGISQDDIHHIFKRFYRS 362

Query: 79  KISDD 83
           + S D
Sbjct: 363 RRSSD 367


>gi|239905954|ref|YP_002952693.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795818|dbj|BAH74807.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 319

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 25  IAIKELIENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             I  L+ N+L   ++     +        G++  ++ D G G+  E +P       T+K
Sbjct: 220 QVILNLLTNAL--HATPEGGTITLATGRQNGRAVIEVRDTGCGIPPENLPKVFDPFFTTK 277


>gi|167957272|ref|ZP_02544346.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
           TM7c]
          Length = 114

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           IKE+ +NS+D   A  +++VE  +   GG    +I+D+G G+  +
Sbjct: 67  IKEIADNSIDEAIAGYATKVEVTLLEDGGA---RISDDGRGIPVD 108


>gi|163755156|ref|ZP_02162277.1| Histidine Kinase [Kordia algicida OT-1]
 gi|161325223|gb|EDP96551.1| Histidine Kinase [Kordia algicida OT-1]
          Length = 819

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 15/72 (20%)

Query: 8  EKIINQIAAGEI-IERPSIAIKELIENSLDAESSRVETVIAGGG------------KSFF 54
            I+ Q+  GE  +     A+ ELI+NS DA+++ V   I   G            K F 
Sbjct: 11 PHIVKQL--GEQLVSDEITALLELIKNSYDADANYVSIEINTTGVYEKSKLFYPNHKGFI 68

Query: 55 QITDNGFGMTSE 66
           + D+GFGM+ E
Sbjct: 69 VVEDDGFGMSEE 80


>gi|172056050|ref|YP_001812510.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
 gi|171988571|gb|ACB59493.1| DNA gyrase, B subunit [Exiguobacterium sibiricum 255-15]
          Length = 643

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 49 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 88


>gi|299541761|ref|ZP_07052084.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1]
 gi|298725499|gb|EFI66140.1| DNA gyrase subunit B [Lysinibacillus fusiformis ZC1]
          Length = 644

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + ++  I    +++ ++ DNG G+ 
Sbjct: 52 EIVDNSIDEALAGFCTDIKVTIEK--ENWIRVEDNGRGIP 89


>gi|257454361|ref|ZP_05619624.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60]
 gi|257448264|gb|EEV23244.1| DNA topoisomerase IV, B subunit [Enhydrobacter aerosaccus SK60]
          Length = 629

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 15/81 (18%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   A  +  +  ++   G     + D+G GM ++         I
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKNITVILHTDG--SLSVEDDGRGMPTDIHPEFKQSGI 86

Query: 69  PMAVQR-HCTSKISDDFSNIH 88
            + + R H   K S D   + 
Sbjct: 87  ELILTRLHAGGKFSTDNYQVS 107


>gi|238059301|ref|ZP_04604010.1| hsp90-like protein [Micromonospora sp. ATCC 39149]
 gi|237881112|gb|EEP69940.1| hsp90-like protein [Micromonospora sp. ATCC 39149]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 45/185 (24%)

Query: 27  IKELIENSLDA--------------ESS----RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA               +      +E  +    ++   + DNG GM+ +++
Sbjct: 33  LRELISNASDALDKLRLESLVDKDLAADVSDLHIEIEVDRDARTL-TVRDNGIGMSRDDV 91

Query: 69  PMAVQRHCTS-------KISD--------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRP 112
              +     S       K+ +        D       GF      +   V+  +TL++R 
Sbjct: 92  VRLIGTIAKSGTAELLAKLRESKDTAASADLIGQFGVGF-----YATFMVADRVTLLTRR 146

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
                G +   +GE   SV  V     GT V V       P   +    +      I ++
Sbjct: 147 AGEAEGTRWESTGEGTYSVETVDDAPQGTAVTVHLK----PEDSDDHLYDYTAEWKIREI 202

Query: 172 IRRMA 176
           ++R +
Sbjct: 203 VKRYS 207


>gi|29293589|gb|AAO67726.1| DNA gyrase subunit B [Mesoplasma photuris]
          Length = 549

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ +   +   G     + DNG G+ 
Sbjct: 16 EIVDNSIDEALAGYATEINVTLEKNG--SVTVADNGRGVP 53


>gi|51317702|gb|AAT99972.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317704|gb|AAT99973.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317706|gb|AAT99974.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317708|gb|AAT99975.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317710|gb|AAT99976.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317712|gb|AAT99977.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317714|gb|AAT99978.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317716|gb|AAT99979.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317718|gb|AAT99980.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317720|gb|AAT99981.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317722|gb|AAT99982.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317724|gb|AAT99983.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|112031371|gb|ABH88158.1| GyrB [Borrelia hermsii]
 gi|112031375|gb|ABH88160.1| GyrB [Borrelia hermsii]
 gi|164564666|gb|ABY61085.1| DNA gyrase B [Borrelia hermsii]
 gi|164564676|gb|ABY61090.1| DNA gyrase B [Borrelia hermsii]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 34/249 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR 74
           + E+++NS+D   A    ++E VI     +   + DNG G+      EE    + + + +
Sbjct: 37  VYEVVDNSIDEALAGFCDKIEVVINSD--NSITVNDNGRGIPIDIHEEEGISALELVLTK 94

Query: 75  -HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            H   K +     + + G  G       AL S  AV    ++SR  +             
Sbjct: 95  LHSGGKFNKGTYKV-SGGLHGVGISVVNALSSFLAV----IVSRDGKLFKQTYSRGIPTS 149

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
              +  V+   GT V          A     ++ + +   ++  +R +A    K+  +  
Sbjct: 150 EVDIIGVSSARGTKVT-------FLADTEIFETLEYDFETLSKRLRELAFLNDKIRISIE 202

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA 247
             +S + K       G     +  +              + +   +    G+     G +
Sbjct: 203 DKRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSVGLKW-TEGYS 261

Query: 248 NQFYVFING 256
           +    F+N 
Sbjct: 262 DHILSFVNN 270


>gi|167757845|ref|ZP_02429972.1| hypothetical protein CLOSCI_00176 [Clostridium scindens ATCC 35704]
 gi|167664499|gb|EDS08629.1| hypothetical protein CLOSCI_00176 [Clostridium scindens ATCC 35704]
          Length = 1205

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 19/70 (27%)

Query: 24  SIAI--KELIENSLDA----ESSR---------VETVIAGGGKSFFQITDNGFGMTSEEI 68
           S  +  +ELI+NS+DA    E+           +E  +   GK +F+I D G GM     
Sbjct: 641 SKVVFARELIQNSIDAISVREAKDERMFSKEILIEIKVDENGKRYFKIVDRGTGMDR--- 697

Query: 69  PMAVQRHCTS 78
              ++R+ TS
Sbjct: 698 -YKIERYFTS 706


>gi|148762477|dbj|BAF63940.1| DNA topoisomerase IV subunit B [Bacillus licheniformis]
          Length = 406

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 13 EIVDNSIDEALAGYCTEINVAIEKD--NSITVKDNGRGIP 50


>gi|134291684|ref|YP_001115453.1| multi-sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134134873|gb|ABO59198.1| multi-sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 686

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 23  PSIAIKELIENSL-----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
               ++ L++N++     DA    +   +A   G++  ++ D+G G+  +++    +R 
Sbjct: 571 LESMVRNLVDNAIRYSPADA---CITVSVARCDGRTTLRVEDSGPGIGDDDLRRLGERF 626


>gi|52783861|ref|YP_089690.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
 gi|319648524|ref|ZP_08002740.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
 gi|52346363|gb|AAU38997.1| GyrB [Bacillus licheniformis ATCC 14580]
 gi|317389603|gb|EFV70414.1| DNA gyrase subunit B [Bacillus sp. BT1B_CT2]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 43 EIVDNSIDEALAGYCTEINVAIEKD--NSITVKDNGRGIP 80


>gi|52078497|ref|YP_077288.1| DNA gyrase subunit B [Bacillus licheniformis ATCC 14580]
 gi|52001708|gb|AAU21650.1| DNA gyrase (subunit B) [Bacillus licheniformis ATCC 14580]
          Length = 639

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 45 EIVDNSIDEALAGYCTEINVAIEKD--NSITVKDNGRGIP 82


>gi|298230621|ref|ZP_06964302.1| DNA gyrase subunit B [Streptococcus pneumoniae str. Canada
          MDR_19F]
          Length = 115

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|257054192|ref|YP_003132024.1| histidine kinase with GAF domain-containing protein
           [Saccharomonospora viridis DSM 43017]
 gi|256584064|gb|ACU95197.1| histidine kinase with GAF domain protein [Saccharomonospora viridis
           DSM 43017]
          Length = 385

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGM 63
           +  +  + I A    E  S  ++        + +S V   +    GG    ++ DNG G+
Sbjct: 291 IPAERADHIRAALR-EALSNVVRH-------SGASEVRVTLRRDDGGLRL-RVRDNGCGV 341

Query: 64  TSEEIPMAVQRH 75
              ++     RH
Sbjct: 342 PR-DVEKRGLRH 352


>gi|209809295|ref|YP_002264833.1| signal transduction protein, histidine kinase [Aliivibrio
          salmonicida LFI1238]
 gi|208010857|emb|CAQ81258.1| signal transduction protein, histidine kinase [Aliivibrio
          salmonicida LFI1238]
          Length = 997

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E I     AI EL +N+ DA++  V   I  G KS   I DNGFGM + +         T
Sbjct: 21 EQIADCPTAISELWKNAYDADADEVALHILDGEKSIAAIVDNGFGMNASDFEEKWLTVGT 80

Query: 78 -SKISD 82
           SKI  
Sbjct: 81 ESKIES 86


>gi|152992087|ref|YP_001357808.1| two-component sensor histidine kinase [Sulfurovum sp. NBC37-1]
 gi|151423948|dbj|BAF71451.1| two-component sensor histidine kinase [Sulfurovum sp. NBC37-1]
          Length = 339

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            +K LIEN+L    D     +   I         + D G G++ +++    ++   S
Sbjct: 247 VLKNLIENALKYSKD----TITVRIDE---DRISVIDKGTGISEKDLGKVTKKFYRS 296


>gi|48478486|ref|YP_024192.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790]
 gi|48431134|gb|AAT43999.1| DNA gyrase subunit B [Picrophilus torridus DSM 9790]
          Length = 646

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM------ 70
           E     + E+I+NS+D   A   S +  +I   G     + D+G G+  +  P       
Sbjct: 32  EGLHHMVYEVIDNSIDESMAGFCSNIYIIIYKDG--SISVEDDGRGIPVDMHPKYKRPGL 89

Query: 71  ---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGE 126
                + H  +K   +   + T G  G  +  + A+S  L  + +        +      
Sbjct: 90  EIVLTELHSGAKFDKNVYKV-TGGLHGVGVHVVNALSDYLEAIVKKNDKLYIEKFERGLP 148

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE------TNLITDVIRRMAIAYP 180
                    +   TI +V+         + F    Q+         +I    R++A   P
Sbjct: 149 VTKMEELDYIMASTIKDVKIKLANHGTIIKFHPDPQIFDVRDFSYEIIAGRCRQLAFLNP 208

Query: 181 KVSFTFSTIK-SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
           +V+ T    + S +   +F      F + IS      + +      E   E+  +
Sbjct: 209 QVTITVEDERTSKKETYHFTGGLSEFVKYISSNKDPVYKDPIYYSTEIEKEVHNE 263


>gi|84517076|ref|ZP_01004432.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Loktanella vestfoldensis SKA53]
 gi|84508971|gb|EAQ05432.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Loktanella vestfoldensis SKA53]
          Length = 584

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA  +     +E ++A G     QI DNG G+  E +    +   T
Sbjct: 474 RLEQVIINLLRNALDATKTSDNPTIEILLAVGDTVSLQIRDNGEGI--ENLDELFEPFYT 531

Query: 78  SK 79
           +K
Sbjct: 532 TK 533


>gi|260910948|ref|ZP_05917589.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp.
          oral taxon 472 str. F0295]
 gi|260634939|gb|EEX52988.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella sp.
          oral taxon 472 str. F0295]
          Length = 657

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          + E ++NS+D   A   S +E  I     +   + D+G G+  +E    
Sbjct: 45 VNETVDNSIDEAMAGYCSSIEVTINED--NSITVQDDGRGIPVDEHEKL 91


>gi|193216997|ref|YP_002000239.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1]
 gi|193002320|gb|ACF07535.1| DNA gyrase subunit B [Mycoplasma arthritidis 158L3-1]
          Length = 647

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +E  +     +  ++ DNG GM  +
Sbjct: 46 EIVDNSVDEAMAGFATNIEVKLHPN--NEIEVIDNGRGMPVD 85


>gi|167750379|ref|ZP_02422506.1| hypothetical protein EUBSIR_01353 [Eubacterium siraeum DSM 15702]
 gi|167656739|gb|EDS00869.1| hypothetical protein EUBSIR_01353 [Eubacterium siraeum DSM 15702]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 29  ELIEN----SL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+EN    ++    D    RVE  +   G      + DNG G+  E +    +R  
Sbjct: 472 ELVENIVSNAIKYNKDGG--RVEITLHDVGETGCIYVRDNGIGIPKESLNRVFERFY 526


>gi|325954875|ref|YP_004238535.1| DNA gyrase subunit beta [Weeksella virosa DSM 16922]
 gi|323437493|gb|ADX67957.1| DNA gyrase, B subunit [Weeksella virosa DSM 16922]
          Length = 671

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     +   I  G  +   ++DNG G+  +
Sbjct: 67  VYEVVDNSIDEALAGFCDTISVKILEG--NSISVSDNGRGIPVD 108


>gi|241554082|ref|YP_002979295.1| HSP90 family molecular chaperone-like protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240863388|gb|ACS61050.1| HSP90 family molecular chaperone-like protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 522

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 21/122 (17%)

Query: 22  RPSIAIKELIENSLDA-------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            P    +E ++NS DA             E+ +V   I    +S  +I DNG G+++E+ 
Sbjct: 46  DPMTIYREYVQNSADAIDDARSRGLISAEEAGKVLITIDPMTRS-IRIRDNGSGLSNEDF 104

Query: 69  -PMAVQRHCTSKISDDFSNIHTFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
                    + K        +  GFRG   L  +G    L   SR   +++ A++    +
Sbjct: 105 SRKMAALGASGK-----RGTNARGFRGVGRLAGLGYAQELVFRSRTASDDSVAELTWDCK 159

Query: 127 KI 128
           ++
Sbjct: 160 RL 161


>gi|197123331|ref|YP_002135282.1| DNA topoisomerase VI subunit B [Anaeromyxobacter sp. K]
 gi|196173180|gb|ACG74153.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter sp. K]
          Length = 689

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 48/194 (24%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--------------FFQITDNGFGMTSEE 67
           IKE ++NSLDA  E+     +   +   G                   + DNG G+   +
Sbjct: 119 IKEAVDNSLDACEEAGILPEITIEVRDLGLDDKGEGELTKGEGRFVVVVEDNGPGIVKAQ 178

Query: 68  IPMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLT------LMSRPPQNNTG-- 118
            P    +    SK         + G +G  + +      LT      ++SR  +      
Sbjct: 179 APKIFGKLLYGSKFH---RLKQSRGQQGIGISAAAMYGQLTTGQPIRMISRTGKGKPAFG 235

Query: 119 ------AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                  +                  GT VE+  +            + Q     +   +
Sbjct: 236 LEIQIDTRKNNPVVTAERQLDDWHEHGTRVELEIV-----------ANWQQGQRFVNRYV 284

Query: 173 RRMAIAYPKVSFTF 186
              A++ P  +F +
Sbjct: 285 EHTALSNPHAAFHY 298


>gi|291532646|emb|CBL05759.1| DNA gyrase subunit B [Megamonas hypermegale ART12/1]
          Length = 665

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A   + +E  I     +   +TDNG G+  +
Sbjct: 72  VYEVVDNSIDEALAGYCTHIEVTIHKD--NSITVTDNGRGIPVD 113


>gi|150400870|ref|YP_001324636.1| DNA topoisomerase VI subunit B [Methanococcus aeolicus Nankai-3]
 gi|150013573|gb|ABR56024.1| DNA topoisomerase VI, B subunit [Methanococcus aeolicus Nankai-3]
          Length = 662

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 25 IAIKELIENSLDA--ESS---RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAV 72
            I ELI NSLDA  E+     ++  I   G       + DNG G+  E +P   
Sbjct: 39 TIIHELITNSLDACEEAEILPDIDITIKKLGSDHYHISVEDNGPGIPPEFVPKVF 93


>gi|77456232|ref|YP_345737.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1]
 gi|77380235|gb|ABA71748.1| DNA gyrase subunit B [Pseudomonas fluorescens Pf0-1]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 26/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVKDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   +
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELVLTVRRSG--KIWEQTYVHGVPQAPMAI 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T            A     K+     +++   IR ++     V       +S + 
Sbjct: 159 VGDSETTGTQIHF----KASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       E  +     +   N         F 
Sbjct: 215 ELFKY--EGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|320546739|ref|ZP_08041050.1| sensor histidine kinase [Streptococcus equinus ATCC 9812]
 gi|320448618|gb|EFW89350.1| sensor histidine kinase [Streptococcus equinus ATCC 9812]
          Length = 314

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LI+N++    D    ++   I  G     +I+DNG G+  E++P   +   T
Sbjct: 221 LIDNAIKYSKDGG--KISIQITKG---CIEISDNGIGILEEDLPRIFEEGFT 267


>gi|313157284|gb|EFR56710.1| DNA gyrase, B subunit [Alistipes sp. HGB5]
          Length = 653

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I     +   + DNG G+ ++
Sbjct: 49 VYEVVDNSIDEALAGYCTDIDVTINED--NSITVRDNGRGIPTD 90


>gi|291513912|emb|CBK63122.1| DNA gyrase subunit B [Alistipes shahii WAL 8301]
          Length = 652

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I     +   + DNG G+ ++
Sbjct: 49 VYEVVDNSIDEALAGYCTDIDVTINED--NSITVRDNGRGIPTD 90


>gi|229530199|ref|ZP_04419588.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)]
 gi|229332332|gb|EEN97819.1| DNA gyrase subunit B [Vibrio cholerae 12129(1)]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 81/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++        +Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|226364316|ref|YP_002782098.1| two-component histidine kinase [Rhodococcus opacus B4]
 gi|226242805|dbj|BAH53153.1| putative two-component histidine kinase [Rhodococcus opacus B4]
          Length = 521

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 20/84 (23%)

Query: 30  LIENSLDA--ESS-------RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA   ++        VE  +         Q+ D+G G+ ++E+  AV R  ++K
Sbjct: 419 LVDNAIDAARGAAGSPGEDAWVEVTVRQEDSTMVVQVADSGPGIPADELDKAVTRGYSTK 478

Query: 80  ISDDFSNIHTFGFRGEALPSIGAV 103
                      G RG  L  +  V
Sbjct: 479 ----------SGQRGLGLALVAQV 492


>gi|152999325|ref|YP_001365006.1| DNA topoisomerase IV subunit B [Shewanella baltica OS185]
 gi|151363943|gb|ABS06943.1| DNA topoisomerase IV, B subunit [Shewanella baltica OS185]
          Length = 628

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 81/212 (38%), Gaps = 29/212 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM  +         + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHATKIEVVLHTD--NSLEVTDDGRGMPVDIHLEEGIPGVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           + + + H   K S+      + G  G  +  + A+S  + +  R      +   +     
Sbjct: 89  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFENGFKV 147

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           E++         N GT V             ++  S     + +  ++R  A+  P +  
Sbjct: 148 EELRPTGTCGRRNTGTRVHFW-------PDASYFDSANFSNSKLIYLLRAKAVLCPGLRI 200

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            F+       +++         + +   IG++
Sbjct: 201 KFTN--KQTNEVHEWFYESGLTDYLKAAIGDN 230


>gi|126338505|ref|XP_001373060.1| PREDICTED: similar to MORC family CW-type zinc finger protein 2
           (Zinc finger CW-type coiled-coil domain protein 1)
           [Monodelphis domestica]
          Length = 979

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DAE++R++          GG     + D+G GM   +    +Q   ++K + +
Sbjct: 35  ELLDNARDAEATRIDIYAEYRENLQGGFMLCFL-DDGTGMDPSDAASVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|19909597|dbj|BAB86994.1| DNA gyrase subunit B [Halomonas cupida]
          Length = 454

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   + +  +I         ++DNG G+ ++
Sbjct: 8  ELVDNSIDEALAGHCTEIRVIIHPD--ESVTVSDNGRGIPTD 47


>gi|87121093|ref|ZP_01076984.1| Histidine Kinase [Marinomonas sp. MED121]
 gi|86163585|gb|EAQ64859.1| Histidine Kinase [Marinomonas sp. MED121]
          Length = 701

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 29 ELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA-VQRHCTSK 79
          EL+ N+ DA++      +      GG     I D+G GM  + I  + +    +SK
Sbjct: 35 ELVRNAYDADAQNCTVTLNNINHPGG--SIVIEDDGCGMDEDVISKSWLVLGHSSK 88


>gi|254237753|ref|ZP_04931076.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719]
 gi|126169684|gb|EAZ55195.1| DNA gyrase subunit B [Pseudomonas aeruginosa C3719]
          Length = 806

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 76/247 (30%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCSEISITIHTD--ESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+SH L L  R        Q+   G     +R V
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSHELRLTIRRHN-KVWEQVYHHGVPQFPLREV 159

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               G+  EV               +     +++   IR ++     V       ++ + 
Sbjct: 160 GETDGSGTEVH-----FKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       E    G      +N         F 
Sbjct: 215 ELFKY--EGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|15595202|ref|NP_064724.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
 gi|107098998|ref|ZP_01362916.1| hypothetical protein PaerPA_01000004 [Pseudomonas aeruginosa PACS2]
 gi|116053724|ref|YP_788159.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888750|ref|YP_002437614.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58]
 gi|296386476|ref|ZP_06875975.1| DNA gyrase subunit B [Pseudomonas aeruginosa PAb1]
 gi|313111474|ref|ZP_07797275.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016]
 gi|81857426|sp|Q9I7C2|GYRB_PSEAE RecName: Full=DNA gyrase subunit B
 gi|9945822|gb|AAG03394.1|AE004440_4 DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
 gi|115588945|gb|ABJ14960.1| DNA gyrase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218768973|emb|CAW24731.1| DNA gyrase subunit B [Pseudomonas aeruginosa LESB58]
 gi|310883777|gb|EFQ42371.1| DNA gyrase subunit B [Pseudomonas aeruginosa 39016]
          Length = 806

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 76/247 (30%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCSEISITIHTD--ESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+SH L L  R        Q+   G     +R V
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSHELRLTIRRHN-KVWEQVYHHGVPQFPLREV 159

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               G+  EV               +     +++   IR ++     V       ++ + 
Sbjct: 160 GETDGSGTEVH-----FKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       E    G      +N         F 
Sbjct: 215 ELFKY--EGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|327284259|ref|XP_003226856.1| PREDICTED: LOW QUALITY PROTEIN: MORC family CW-type zinc finger
           protein 2-like [Anolis carolinensis]
          Length = 1029

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM   +    +Q   ++K S +
Sbjct: 35  ELVDNARDADATRIDIFTERREGLRGGFMLCFL-DDGAGMDEHDAASVIQFGKSAKRSPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|326533942|dbj|BAJ93744.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 120

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 32  ENSLDAESSRVETVIAGGGKSFFQITDNGFGM 63
           EN ++A+SS +   +  GG    Q++D+G  +
Sbjct: 78  EN-INADSSTISITVNDGGLKLIQVSDDGHDI 108


>gi|106734231|gb|ABF82592.1| DNA topoisomerase IV subunit beta [Exiguobacterium oxidotolerans]
          Length = 489

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 21 EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPID 60


>gi|255535639|ref|YP_003096010.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10]
 gi|255341835|gb|ACU07948.1| DNA gyrase subunit B [Flavobacteriaceae bacterium 3519-10]
          Length = 644

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +  VI  G      + DNG G+  +
Sbjct: 40 VYEVVDNSIDEALAGHCDTISVVIHEG--ESISVKDNGRGIPVD 81


>gi|172064152|ref|YP_001811803.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MC40-6]
 gi|171996669|gb|ACB67587.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MC40-6]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A GG +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAASGGGAVIAVRDRGPGIPDDQLDAVFEPF 387


>gi|170698564|ref|ZP_02889633.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria IOP40-10]
 gi|170136498|gb|EDT04757.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria IOP40-10]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A GG +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAASGGGAVIAVRDRGPGIPDDQLDAVFEPF 387


>gi|115359359|ref|YP_776497.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ambifaria AMMD]
 gi|115284647|gb|ABI90163.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ambifaria AMMD]
          Length = 440

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A GG +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAASGGGAVIAVRDRGPGIPDDQLDAVFEPF 387


>gi|15640047|ref|NP_062599.1| DNA gyrase subunit B [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121727887|ref|ZP_01680946.1| DNA gyrase, subunit B [Vibrio cholerae V52]
 gi|147673680|ref|YP_001218397.1| DNA gyrase subunit B [Vibrio cholerae O395]
 gi|153819850|ref|ZP_01972517.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457]
 gi|153821919|ref|ZP_01974586.1| DNA gyrase, subunit B [Vibrio cholerae B33]
 gi|227080252|ref|YP_002808803.1| DNA gyrase, subunit B [Vibrio cholerae M66-2]
 gi|229508300|ref|ZP_04397804.1| DNA gyrase subunit B [Vibrio cholerae BX 330286]
 gi|229508861|ref|ZP_04398352.1| DNA gyrase subunit B [Vibrio cholerae B33]
 gi|229517132|ref|ZP_04406578.1| DNA gyrase subunit B [Vibrio cholerae RC9]
 gi|229606574|ref|YP_002877222.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236]
 gi|254851580|ref|ZP_05240930.1| DNA gyrase subunit B [Vibrio cholerae MO10]
 gi|255746803|ref|ZP_05420749.1| DNA gyrase subunit B [Vibrio cholera CIRS 101]
 gi|262155882|ref|ZP_06029004.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1]
 gi|262167103|ref|ZP_06034818.1| DNA gyrase subunit B [Vibrio cholerae RC27]
 gi|298501200|ref|ZP_07010999.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757]
 gi|11386840|sp|Q9KVX3|GYRB_VIBCH RecName: Full=DNA gyrase subunit B
 gi|9654406|gb|AAF93193.1| DNA gyrase, subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121629831|gb|EAX62246.1| DNA gyrase, subunit B [Vibrio cholerae V52]
 gi|126509611|gb|EAZ72205.1| DNA gyrase, subunit B [Vibrio cholerae NCTC 8457]
 gi|126520539|gb|EAZ77762.1| DNA gyrase, subunit B [Vibrio cholerae B33]
 gi|146315563|gb|ABQ20102.1| DNA gyrase, subunit B [Vibrio cholerae O395]
 gi|227008140|gb|ACP04352.1| DNA gyrase, subunit B [Vibrio cholerae M66-2]
 gi|227011982|gb|ACP08192.1| DNA gyrase, subunit B [Vibrio cholerae O395]
 gi|229346195|gb|EEO11167.1| DNA gyrase subunit B [Vibrio cholerae RC9]
 gi|229354136|gb|EEO19068.1| DNA gyrase subunit B [Vibrio cholerae B33]
 gi|229354573|gb|EEO19495.1| DNA gyrase subunit B [Vibrio cholerae BX 330286]
 gi|229369229|gb|ACQ59652.1| DNA gyrase subunit B [Vibrio cholerae MJ-1236]
 gi|254847285|gb|EET25699.1| DNA gyrase subunit B [Vibrio cholerae MO10]
 gi|255735560|gb|EET90959.1| DNA gyrase subunit B [Vibrio cholera CIRS 101]
 gi|262024489|gb|EEY43175.1| DNA gyrase subunit B [Vibrio cholerae RC27]
 gi|262030334|gb|EEY48976.1| DNA gyrase subunit B [Vibrio cholerae INDRE 91/1]
 gi|297540072|gb|EFH76134.1| DNA gyrase, B subunit [Vibrio cholerae MAK 757]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 81/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++        +Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 ETERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|289596417|ref|YP_003483113.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
 gi|289534204|gb|ADD08551.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
          Length = 663

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
           +KE ++NSLDA  E+     +   I    K      + DNG G+    IP+  
Sbjct: 56  VKEAVDNSLDACEEAEILPDIYVEIQNVSKDEYKIIVEDNGPGIIRRNIPLVF 108


>gi|254166785|ref|ZP_04873639.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
 gi|197624395|gb|EDY36956.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
          Length = 681

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
           +KE ++NSLDA  E+     +   I    K      + DNG G+    IP+  
Sbjct: 74  VKEAVDNSLDACEEAEILPDIYVEIQNVSKDEYKIIVEDNGPGIIRRNIPLVF 126


>gi|254167389|ref|ZP_04874241.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
 gi|197623652|gb|EDY36215.1| DNA topoisomerase VI, B subunit [Aciduliprofundum boonei T469]
          Length = 680

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
           +KE ++NSLDA  E+     +   I    K      + DNG G+    IP+  
Sbjct: 73  VKEAVDNSLDACEEAEILPDIYVEIQNVSKDEYKIIVEDNGPGIIRRNIPLVF 125


>gi|218440010|ref|YP_002378339.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172738|gb|ACK71471.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 1191

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDINSDG--SVTVTDDGRGIPTD 80


>gi|148691971|gb|EDL23918.1| microrchidia 4, isoform CRA_a [Mus musculus]
          Length = 1005

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 141 TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 200

Query: 78  SK 79
            K
Sbjct: 201 DK 202


>gi|94992112|ref|YP_600211.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096]
 gi|94545620|gb|ABF35667.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS2096]
          Length = 651

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 24 SIA-IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          +   + E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 46 ASISVWEIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 91


>gi|304383575|ref|ZP_07366034.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
          DSM 16973]
 gi|304335099|gb|EFM01370.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
          DSM 16973]
          Length = 657

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          + E ++NS+D   A     +E +I     +   + D+G G+  +E    
Sbjct: 45 VNETVDNSIDEAMAGFCKNIEVIINED--NSITVQDDGRGIPVDEHEKL 91


>gi|87310228|ref|ZP_01092359.1| sensor histidine kinase [Blastopirellula marina DSM 3645]
 gi|87286977|gb|EAQ78880.1| sensor histidine kinase [Blastopirellula marina DSM 3645]
          Length = 499

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 9/64 (14%)

Query: 20  IERPSIAIKELIENSLDAESS----RVETVIA---GGGKSFFQITDNGFGMTSEEIPMAV 72
           +E     +  L++N++  + +    R++ +I            I DNG G+  E+     
Sbjct: 361 VEHLRQVVNNLLDNAI--KFTPEGGRIDVLIEKSADNSTVELSIADNGCGIREEDHEKVF 418

Query: 73  QRHC 76
           +R  
Sbjct: 419 ERFY 422


>gi|291003233|ref|ZP_06561206.1| putative two-component system sensor kinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 533

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 18  EIIERPSIAIKELIENSLDA---ESSR---VETVIAGGGKSF-FQITDNGFGMTSEEIPM 70
           E++      +  L++N++DA    S R   VE  +   G +    + DNG G++      
Sbjct: 411 EVVT----VVGNLVDNAIDAARTGSRRPARVEVDLLADGTTLHVSVVDNGDGVSEALRER 466

Query: 71  AVQRHCTSK 79
                 +SK
Sbjct: 467 IFTEGVSSK 475


>gi|134098550|ref|YP_001104211.1| putative two-component system sensor kinase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911173|emb|CAM01286.1| putative two-component system sensor kinase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 538

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 18  EIIERPSIAIKELIENSLDA---ESSR---VETVIAGGGKSF-FQITDNGFGMTSEEIPM 70
           E++      +  L++N++DA    S R   VE  +   G +    + DNG G++      
Sbjct: 416 EVVT----VVGNLVDNAIDAARTGSRRPARVEVDLLADGTTLHVSVVDNGDGVSEALRER 471

Query: 71  AVQRHCTSK 79
                 +SK
Sbjct: 472 IFTEGVSSK 480


>gi|296330042|ref|ZP_06872526.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305672704|ref|YP_003864375.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|296153081|gb|EFG93946.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305410947|gb|ADM36065.1| DNA gyrase subunit B [Bacillus subtilis subsp. spizizenii str.
          W23]
          Length = 638

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 44 EIVDNSIDEALAGYCTDINIQIEKD--NSITVIDNGRGIP 81


>gi|269128403|ref|YP_003301773.1| ATP-binding region ATPase domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268313361|gb|ACY99735.1| ATP-binding region ATPase domain protein [Thermomonospora curvata
           DSM 43183]
          Length = 589

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 53/138 (38%), Gaps = 31/138 (22%)

Query: 27  IKELIENSLDA-----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           ++EL++N++DA        RV     G G    ++ D+G G+T EE+   +    T    
Sbjct: 29  LRELLQNAVDAITARGGGGRVRIETDGAGT--LRVHDDGVGLTEEEVHRLL---ATIGRS 83

Query: 78  SKISDDFSNIHTFGF-R-------GEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKI 128
           SK  +        GF R       G  L S   V+  + +++R  +           +  
Sbjct: 84  SKRDE-------LGFARHDFLGQFGIGLLSAFLVADEIEVVTRSARGGPAVTWTGYADGR 136

Query: 129 SSVRPVAM-NPGTIVEVR 145
             V P      GT V +R
Sbjct: 137 YRVGPGRREEAGTTVTLR 154


>gi|146280548|ref|YP_001170701.1| sensor histidine kinase [Pseudomonas stutzeri A1501]
 gi|145568753|gb|ABP77859.1| sensor histidine kinase [Pseudomonas stutzeri A1501]
          Length = 627

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+  +    G      + DNG G+  E++    +   
Sbjct: 517 RLEQVLINLLHNALDAMAERPQRRLRILCERAGDAWQLSVADNGGGIPGEQLDQVFEPFF 576

Query: 77  TSK 79
           T+K
Sbjct: 577 TTK 579


>gi|306827658|ref|ZP_07460937.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          pyogenes ATCC 10782]
 gi|304430139|gb|EFM33169.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          pyogenes ATCC 10782]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|301166575|emb|CBW26151.1| chaperone protein (heat shock protein) [Bacteriovorax marinus SJ]
          Length = 645

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 36/151 (23%)

Query: 27  IKELIENSLDA------ESSRVETVIAGGGK--------SFFQITDNGFGMTSEEIPMAV 72
           I+EL+ N+ DA       S  +   I  G              I+DNG GM+  +I   +
Sbjct: 31  IRELVANATDAITKRHTLSRNLNVEIPQGSINISVNKDNKLITISDNGLGMSEADIEKYI 90

Query: 73  QRHCTS-------KISD-------DFSNIHTFGFRGEALPSIGAVS-HLTLMS-RPPQNN 116
            +   S       K+ D       D       GF      S   V+  + + S    +  
Sbjct: 91  AQLAFSGAEEFVKKLKDEGAEDGQDIIGKFGLGF-----YSAFMVADKVEIESLSMNEGA 145

Query: 117 TGAQIAISGEKISSVRPVAMNP-GTIVEVRD 146
              +    G+   +         GT + +  
Sbjct: 146 KATKWICEGDTEYTFTDSTKETIGTTIYLHI 176


>gi|209559109|ref|YP_002285581.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131]
 gi|209540310|gb|ACI60886.1| DNA gyrase subunit B [Streptococcus pyogenes NZ131]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|139474074|ref|YP_001128790.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo]
 gi|134272321|emb|CAM30575.1| DNA gyrase subunit B [Streptococcus pyogenes str. Manfredo]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|94994032|ref|YP_602130.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750]
 gi|94547540|gb|ABF37586.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10750]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|94988237|ref|YP_596338.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429]
 gi|94541745|gb|ABF31794.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS9429]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|91214973|ref|ZP_01251945.1| sensor histidine kinase [Psychroflexus torquis ATCC 700755]
 gi|91186578|gb|EAS72949.1| sensor histidine kinase [Psychroflexus torquis ATCC 700755]
          Length = 359

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 21  ERPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           ER    I  LI NS+       +S +      GGK  F++TDNG G+  E IP   +R 
Sbjct: 236 ERIQQVITNLIVNSIKYGKKGGTSEISLEQLEGGKVMFRVTDNGEGIEKENIPRLFERF 294


>gi|71903198|ref|YP_280001.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180]
 gi|71802293|gb|AAX71646.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS6180]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|21904202|gb|AAM79083.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS315]
          Length = 620

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 21 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 60


>gi|15674782|ref|NP_268956.1| DNA gyrase subunit B [Streptococcus pyogenes M1 GAS]
 gi|71910366|ref|YP_281916.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005]
 gi|73919732|sp|Q9A0L0|GYRB_STRP1 RecName: Full=DNA gyrase subunit B
 gi|13621909|gb|AAK33677.1| putative DNA gyrase, subunit B [Streptococcus pyogenes M1 GAS]
 gi|71853148|gb|AAZ51171.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS5005]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|19745824|ref|NP_606960.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS8232]
 gi|50913919|ref|YP_059891.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394]
 gi|73919730|sp|Q5XD05|GYRB_STRP6 RecName: Full=DNA gyrase subunit B
 gi|73919731|sp|Q8P1M4|GYRB_STRP8 RecName: Full=DNA gyrase subunit B
 gi|19747970|gb|AAL97459.1| putative DNA gyrase, subunit B [Streptococcus pyogenes MGAS8232]
 gi|50902993|gb|AAT86708.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10394]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|28896290|ref|NP_802640.1| DNA gyrase subunit B [Streptococcus pyogenes SSI-1]
 gi|161485752|ref|NP_664280.2| DNA gyrase subunit B [Streptococcus pyogenes MGAS315]
 gi|73919729|sp|Q8K840|GYRB_STRP3 RecName: Full=DNA gyrase subunit B
 gi|28811541|dbj|BAC64473.1| putative DNA gyrase B subunit [Streptococcus pyogenes SSI-1]
          Length = 650

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|261213260|ref|ZP_05927542.1| DNA gyrase subunit B [Vibrio sp. RC341]
 gi|262402079|ref|ZP_06078643.1| DNA gyrase subunit B [Vibrio sp. RC586]
 gi|260837534|gb|EEX64237.1| DNA gyrase subunit B [Vibrio sp. RC341]
 gi|262351725|gb|EEZ00857.1| DNA gyrase subunit B [Vibrio sp. RC586]
          Length = 805

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++        +Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   S  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLSDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +                +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNQEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|313621661|gb|EFR92452.1| DNA gyrase subunit B [Listeria innocua FSL S4-378]
          Length = 286

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +E  I     +   + DNG G+ 
Sbjct: 52 EIVDNAIDEALAGFCTEIEITIEAD--NSITVRDNGRGIP 89


>gi|192289582|ref|YP_001990187.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192283331|gb|ACE99711.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 450

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA     + R+E     GG      ++DNG G+    I    +   T+K
Sbjct: 353 LVDNALDAVRGQSAPRIEIAARRGGDQIVITVSDNGAGLPDGLIDKIFEPFFTTK 407


>gi|149377750|ref|ZP_01895484.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893]
 gi|149357976|gb|EDM46464.1| DNA topoisomerase IV subunit B [Marinobacter algicola DG893]
          Length = 631

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 37/214 (17%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   A  + R++ ++   G     + D+G GM  +         + 
Sbjct: 32  RPNHLAQEVIDNSVDEALAGHARRIDVILHSDG--SLSVEDDGRGMPVDMHKEHGVPGVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
           + + R H   K S        + F G  L  +G VS +  +S   +            ++
Sbjct: 90  LILTRLHAGGKFSQ-----GNYNFSG-GLHGVG-VSVVNALSTHLE-----VSIKRDGQL 137

Query: 129 SSVRPVAMNPGTIVEVRDLFF--TIPARLNFLK------SEQVETNLITDVIRRMAIAYP 180
             +     +  T + V D         RL F        S +   + +   +R  A+  P
Sbjct: 138 HQMTFANGHKETDLTVVDSVGKRNTGTRLKFTPDPSYFDSPKFSVSRLRHNLRAKAVLCP 197

Query: 181 --KVSFTFSTIKSNRYKMNFQSTNGNFPERISQV 212
              V+F                        ++ +
Sbjct: 198 GLNVTFLQEHTGDKDEWCYEGGLRDYLRTELADI 231


>gi|148691972|gb|EDL23919.1| microrchidia 4, isoform CRA_b [Mus musculus]
          Length = 977

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 142 TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 201

Query: 78  SK 79
            K
Sbjct: 202 DK 203


>gi|126541048|emb|CAM46135.1| microrchidia 4 [Mus musculus]
          Length = 928

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|39934055|ref|NP_946331.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39647903|emb|CAE26423.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 450

 Score = 47.4 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA     + R+E     GG      ++DNG G+    I    +   T+K
Sbjct: 353 LVDNALDAVRGQSAPRIEIAARRGGDQIVITVSDNGAGLPDGLIDKIFEPFFTTK 407


>gi|330827718|ref|YP_004390670.1| sensor histidine kinase [Aeromonas veronii B565]
 gi|328802854|gb|AEB48053.1| Sensor histidine kinase [Aeromonas veronii B565]
          Length = 655

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 30  LIENSL----DA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS+    D+  +  ++   +   G+      +DNG G+  E +P       TSK
Sbjct: 553 LILNSINHGFDSWDKPKKITIKVEQQGEELFIDYSDNGRGIPPEILPRIFDPFVTSK 609


>gi|297162917|gb|ADI12629.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis
          BCW-1]
          Length = 703

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 6/43 (13%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSEE 67
          E+I+NS+D   A +   +E V+   G    ++TDNG G+  + 
Sbjct: 55 EIIDNSVDEALAGACDHIEVVLHDDG--SVEVTDNGRGIPVDN 95


>gi|227541366|ref|ZP_03971415.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182917|gb|EEI63889.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 691

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 25/179 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           E+++NS+D   A  + +V+ V+   G    ++TDNG G+  E         E+ M  Q H
Sbjct: 51  EVVDNSIDEALAGFADKVDVVLHEDG--SVEVTDNGRGIPVEMHQTGRPTVEVVM-TQLH 107

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K ++D   + + G  G  +  + A+S  +    +    +   +              
Sbjct: 108 AGGKFNNDSYKV-SGGLHGVGISVVNALSTRVEADIKRDGYHWYQRFNNQVPDDLEKGGK 166

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           A   GT +                ++ +     I+D +++MA     V    +  + + 
Sbjct: 167 ARGTGTRIRFW-------PDAEIFETVEFNYKTISDRLQQMAFLNKGVYIKLTDKRKHI 218


>gi|227487658|ref|ZP_03917974.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092352|gb|EEI27664.1| DNA gyrase subunit B [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 691

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 25/179 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           E+++NS+D   A  + +V+ V+   G    ++TDNG G+  E         E+ M  Q H
Sbjct: 51  EVVDNSIDEALAGFADKVDVVLHEDG--SVEVTDNGRGIPVEMHQTGRPTVEVVM-TQLH 107

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K ++D   + + G  G  +  + A+S  +    +    +   +              
Sbjct: 108 AGGKFNNDSYKV-SGGLHGVGISVVNALSTRVEADIKRDGYHWYQRFNNQVPDDLEKGGK 166

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           A   GT +                ++ +     I+D +++MA     V    +  + + 
Sbjct: 167 ARGTGTRIRFW-------PDAEIFETVEFNYKTISDRLQQMAFLNKGVYIKLTDKRKHI 218


>gi|194016365|ref|ZP_03054979.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
 gi|194011838|gb|EDW21406.1| DNA gyrase, B subunit [Bacillus pumilus ATCC 7061]
          Length = 640

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 46 EIVDNSIDEALAGYCTDITVQIEKD--NSITVKDNGRGIP 83


>gi|157690804|ref|YP_001485266.1| DNA gyrase subunit B [Bacillus pumilus SAFR-032]
 gi|157679562|gb|ABV60706.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bacillus pumilus
          SAFR-032]
          Length = 642

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 48 EIVDNSIDEALAGYCTDITVQIEKD--NSITVKDNGRGIP 85


>gi|119512311|ref|ZP_01631397.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
 gi|119463024|gb|EAW43975.1| DNA topoisomerase IV subunit B [Nodularia spumigena CCY9414]
          Length = 645

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGHCTHIEVDINADG--SVTVTDDGRGIPTD 80


>gi|118470567|ref|YP_884428.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|152032506|sp|A0QNE0|GYRB_MYCS2 RecName: Full=DNA gyrase subunit B
 gi|152032507|sp|P0C559|GYRB_MYCSM RecName: Full=DNA gyrase subunit B
 gi|118171854|gb|ABK72750.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 675

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++N++D   A  ++RV+  I   G    ++ D+G G+        V+ H T
Sbjct: 48 EVVDNAVDEAMAGFATRVDVKIHADG--SVEVRDDGRGIP-------VEMHAT 91


>gi|1226021|emb|CAA58884.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 675

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++N++D   A  ++RV+  I   G    ++ D+G G+        V+ H T
Sbjct: 48 EVVDNAVDEAMAGFATRVDVKIHADG--SVEVRDDGRGIP-------VEMHAT 91


>gi|75908731|ref|YP_323027.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
 gi|75702456|gb|ABA22132.1| DNA gyrase subunit B [Anabaena variabilis ATCC 29413]
          Length = 645

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDINADG--SVTVTDDGRGIPTD 80


>gi|31071475|dbj|BAC76786.1| DNA gyrase B subunit [Nostoc entophytum]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEVDINADG--SVTVTDDGRGIPTD 51


>gi|23978220|dbj|BAC21108.1| DNA gyrase B subunit [Nostoc linckia]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEVDINADG--SVTVTDDGRGIPTD 51


>gi|23978211|dbj|BAC21105.1| DNA gyrase B subunit [Anabaena variabilis]
          Length = 396

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEVDINADG--SVTVTDDGRGIPTD 51


>gi|7437446|pir||S70991 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Mycobacterium smegmatis
 gi|1321898|emb|CAA63253.1| gyrB [Mycobacterium smegmatis]
          Length = 706

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 13/53 (24%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E+++N++D   A  ++RV+  I   G    ++ D+G G+        V+ H T
Sbjct: 79  EVVDNAVDEAMAGFATRVDVKIHADG--SVEVRDDGRGIP-------VEMHAT 122


>gi|1213062|emb|CAA63917.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
          Length = 675

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++N++D   A  ++RV+  I   G    ++ D+G G+        V+ H T
Sbjct: 48 EVVDNAVDEAMAGFATRVDVKIHADG--SVEVRDDGRGIP-------VEMHAT 91


>gi|291529939|emb|CBK95524.1| PAS domain S-box [Eubacterium siraeum 70/3]
          Length = 581

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 29  ELIEN----SL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+EN    ++    D    RVE  +   G      + DNG G+  E +    +R  
Sbjct: 472 ELVENIVSNAIKYNKDGG--RVEITLHNVGETGCIYVRDNGIGIPKESLNRVFERFY 526


>gi|172061830|ref|YP_001809482.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MC40-6]
 gi|171994347|gb|ACB65266.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MC40-6]
          Length = 677

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 22  RPSIAIKELIENSLDA--E--SSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     +  +E  IA    +   ++ DNG G+  + +P   +   
Sbjct: 557 RLEQVLINLLGNALDAVAGVTAPAIEVTIAVSVATLAVEVRDNGPGIAPDLLPRLFEPFF 616

Query: 77  TSKISDDFSNIHTFGFRGEAL-----PSIGA 102
           T+K           G RG  L      SI +
Sbjct: 617 TTK---------EMG-RGLGLGLAISSSIAS 637


>gi|89067410|ref|ZP_01154923.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89046979|gb|EAR53033.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 516

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 29/99 (29%)

Query: 5   KLSEKIINQIAAGEIIE-----RPSIAIK------E-----LIENSLDAES-----SRVE 43
           +L         AGE+I+      P + ++      E     L+ N+ DA +     SR+ 
Sbjct: 234 QLPAS-----RAGEVIDYVVDIDPQVCVECDPGQLENALFNLVLNARDAFARSGTGSRIT 288

Query: 44  TVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
              A G   G     + D+G GM+ + +  A     T+K
Sbjct: 289 ISTAPGPREGMVEIVVRDDGPGMSDDVLERAADPFFTTK 327


>gi|186686392|ref|YP_001869588.1| DNA gyrase subunit B [Nostoc punctiforme PCC 73102]
 gi|186468844|gb|ACC84645.1| DNA gyrase, B subunit [Nostoc punctiforme PCC 73102]
          Length = 645

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+  +
Sbjct: 39 VYEVVDNSIDEALAGHCTHIEVDINADG--SVTVTDDGRGIPVD 80


>gi|323143411|ref|ZP_08078096.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066]
 gi|322416816|gb|EFY07465.1| DNA gyrase, B subunit [Succinatimonas hippei YIT 12066]
          Length = 807

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 85/247 (34%), Gaps = 23/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +E  I   G    ++ DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGFCTDIEVTICADG--SVKVKDNGRGIPVDEHPEEHRSAAEVVMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K   +   + + G  G  +  + A+S   +++   Q +   Q  ++G    +     
Sbjct: 102 AGGKFDSNSYKV-SGGLHGVGVSVVNALSDKLVLTIWRQGHVWQQTYLNGGNPEAPLKQI 160

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +          +       +   +   + N++   +R ++     +    +  +    K
Sbjct: 161 GDSDATGTEVRFW----PSPSIFSNTTFDYNVLAKRLRELSFLNSGIKIILT-DEREAGK 215

Query: 196 MNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
            +    NG   E +  +  G++ +NN +    K  E  +     +           + F 
Sbjct: 216 SHTFHHNGGIEEFVRYLNRGKNPLNNKIFHCTKMCEDHIMVEISMQW-TDAYNESVFCFT 274

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 275 NNVPQKD 281


>gi|146305046|ref|YP_001185511.1| DNA gyrase subunit B [Pseudomonas mendocina ymp]
 gi|145573247|gb|ABP82779.1| DNA gyrase subunit B [Pseudomonas mendocina ymp]
          Length = 806

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 77/247 (31%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCSEIVITIHPD--ESISVRDNGRGIPVDIHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        QI   G   + +  V
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELRLTIRRAG-KVWEQIYHHGVPQAPLATV 159

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               GT  E+        A      +     +++   +R ++     V       +S + 
Sbjct: 160 GDTDGTGTEIH-----FKASAETFSNIHFSWDILAKRLRELSFLNSGVGILLRDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +     + N V       E    G      +N         F 
Sbjct: 215 ELFKY--EGGLKAFVEYLNTNKNVVNQVFHFNIQREEDGVGVEVALQWNDSFNENILCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|106734189|gb|ABF82571.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734201|gb|ABF82577.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIESG--NSILVEDNGRGIPVD 44


>gi|291165885|gb|EFE27932.1| DNA gyrase, B subunit [Filifactor alocis ATCC 35896]
          Length = 638

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +   I  G  +  ++ D+G G+ +E
Sbjct: 45 VYEVVDNAIDEALAGFCKTIYVAIEEG--NAIRVIDDGRGIPTE 86


>gi|237807477|ref|YP_002891917.1| hypothetical protein Tola_0702 [Tolumonas auensis DSM 9187]
 gi|237499738|gb|ACQ92331.1| conserved hypothetical protein [Tolumonas auensis DSM 9187]
          Length = 588

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 26 AIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPM 70
          A+KELI+N  DA++  +   +          + DNG GMT  E+  
Sbjct: 26 ALKELIDNGWDADAEHINISLPEPLTSDPVIVCDNGSGMTEHELLK 71


>gi|195953991|ref|YP_002122281.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933603|gb|ACG58303.1| DNA gyrase, B subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 786

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ +   I         + DNG G+ 
Sbjct: 40 EIVDNSVDEAMAGYATHIRVHIHQD--DSITVEDNGRGIP 77


>gi|167760490|ref|ZP_02432617.1| hypothetical protein CLOSCI_02864 [Clostridium scindens ATCC 35704]
 gi|167661856|gb|EDS05986.1| hypothetical protein CLOSCI_02864 [Clostridium scindens ATCC 35704]
          Length = 409

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 30  LIENSLD---AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           L++N+LD   A    +              I+DNG G+  E+I    +R   SK S D  
Sbjct: 311 LVKNALDHTMAG-GIIRISWENTPNMLRLCISDNGSGIAPEDIHHIFKRFYRSKHSLDTQ 369

Query: 86  NIH 88
            I 
Sbjct: 370 GIG 372


>gi|145637577|ref|ZP_01793234.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH]
 gi|145269263|gb|EDK09209.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittHH]
          Length = 632

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFASKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|145632919|ref|ZP_01788652.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655]
 gi|144986575|gb|EDJ93141.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 3655]
          Length = 632

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFASKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|68249955|ref|YP_249067.1| DNA topoisomerase IV subunit B [Haemophilus influenzae 86-028NP]
 gi|148826055|ref|YP_001290808.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE]
 gi|68058154|gb|AAX88407.1| topoisomerase IV subunit B [Haemophilus influenzae 86-028NP]
 gi|148716215|gb|ABQ98425.1| DNA topoisomerase IV subunit B [Haemophilus influenzae PittEE]
          Length = 632

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S++E ++        ++TDNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFASKIEVILHPD--QSIEVTDNGRGMPVD 77


>gi|325972866|ref|YP_004249057.1| DNA gyrase subunit beta [Spirochaeta sp. Buddy]
 gi|324028104|gb|ADY14863.1| DNA gyrase, B subunit [Spirochaeta sp. Buddy]
          Length = 677

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGG--GKSFFQITDNGFGMTSE 66
           IE     + E+++NS+D   A   S ++  +     G+    + DNG G+  E
Sbjct: 56  IEGLHHLVYEVVDNSIDEAMAGYCSDIQVFLDLDSEGREICTVEDNGRGIPVE 108


>gi|218132753|ref|ZP_03461557.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992479|gb|EEC58482.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC
           43243]
          Length = 383

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
           +   +   G  +  +I DNG G++ E++    +R 
Sbjct: 284 IRIELFNDGDYALIRIEDNGKGISPEDLKHVFERF 318


>gi|84687059|ref|ZP_01014942.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665033|gb|EAQ11514.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 596

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N++DA  ++      V+ ++ GG +    + DNG G+  E++    +  
Sbjct: 479 RLEQVLINLLRNAIDA--TKSVDDPQVDILLTGGEQVVISVRDNGPGV--EDLDQLFEPF 534

Query: 76  CTSKISDD 83
            T+K   D
Sbjct: 535 YTTKAPGD 542


>gi|264680176|ref|YP_003280085.1| hypothetical protein CtCNB1_4043 [Comamonas testosteroni CNB-2]
 gi|262210691|gb|ACY34789.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
          Length = 655

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 13 QIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          +IA     + P +A+ EL+ N+ DA +S V+  I    +    + D+G GM + +  
Sbjct: 28 RIA-----QDPEVALTELVANAWDAGASLVDLTIPLTNELALTVEDDGHGMNASQFK 79


>gi|121534128|ref|ZP_01665953.1| histidine kinase [Thermosinus carboxydivorans Nor1]
 gi|121307231|gb|EAX48148.1| histidine kinase [Thermosinus carboxydivorans Nor1]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 30 LIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          L++NS++A +  VE  I           +++DNG GM       A     TS
Sbjct: 11 LVQNSIEAGAGVVEVTINEDKQQDLLVLRVSDNGRGMDEMTCRQATDPFVTS 62


>gi|15835080|ref|NP_296839.1| DNA gyrase subunit B [Chlamydia muridarum Nigg]
 gi|270285247|ref|ZP_06194641.1| DNA gyrase subunit B [Chlamydia muridarum Nigg]
 gi|270289266|ref|ZP_06195568.1| DNA gyrase subunit B [Chlamydia muridarum Weiss]
 gi|301336643|ref|ZP_07224845.1| DNA gyrase subunit B [Chlamydia muridarum MopnTet14]
 gi|13627141|sp|Q9PKK3|GYRB_CHLMU RecName: Full=DNA gyrase subunit B
 gi|7190505|gb|AAF39313.1| DNA gyrase, subunit B [Chlamydia muridarum Nigg]
          Length = 804

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     ++DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISVSDNGRGIP 81


>gi|327438158|dbj|BAK14523.1| type IIA topoisomerase, B subunit [Solibacillus silvestris
          StLB046]
          Length = 641

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I     ++ ++ DNG G+  +
Sbjct: 48 EIVDNSIDEALAGYCSGITVTIEQD--NWIRVEDNGRGIPVD 87


>gi|303235765|ref|ZP_07322372.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
 gi|302484212|gb|EFL47200.1| DNA gyrase, B subunit [Prevotella disiens FB035-09AN]
          Length = 683

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           E ++NS+D   A   S +E  I     +   + D+G G+  +E    
Sbjct: 74  ETVDNSIDEAMAGYCSHIEVTINED--NSITVEDDGRGIPVDEHEKL 118


>gi|229083806|ref|ZP_04216118.1| Sensor histidine kinase [Bacillus cereus Rock3-44]
 gi|228699508|gb|EEL52181.1| Sensor histidine kinase [Bacillus cereus Rock3-44]
          Length = 535

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 19  IIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           II      +  LI+N+LDA       RV+  I    K    + D G G+  EEI     +
Sbjct: 423 IIHELITIVGNLIDNALDAVMNCEYKRVDISIQYQDKLTITVKDTGVGIQKEEIDKVFVK 482

Query: 75  HCTSK----------ISDDFSNIH 88
             ++K          ISD    I+
Sbjct: 483 GYSTKGENRGYGLYLISDSLKRIN 506


>gi|284992968|ref|YP_003411522.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
 gi|284066213|gb|ADB77151.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
          Length = 414

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 23  PSIAIKELIENSLDAES---SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            + A+  L+ N++ A S   +R+        G     +TDNG G+  E+     +R  
Sbjct: 273 LATAVTNLLANAV-AYSPEHTRIAVSARARAGFVEITVTDNGIGIPREDRSRVFERFY 329


>gi|254520691|ref|ZP_05132747.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
 gi|226914440|gb|EEH99641.1| DNA gyrase subunit B [Clostridium sp. 7_2_43FAA]
          Length = 637

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +   I     +   + DNG GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTEISVAINED--NSITVIDNGRGMP 82


>gi|254524349|ref|ZP_05136404.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14]
 gi|219721940|gb|EED40465.1| DNA topoisomerase IV, B subunit [Stenotrophomonas sp. SKA14]
          Length = 629

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  +E  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHARSIEITLYKDG--SVEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 89  LILTRLHAGGKFSN 102


>gi|190573692|ref|YP_001971537.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia K279a]
 gi|190011614|emb|CAQ45233.1| putative topoisomerase IV subunit B [Stenotrophomonas maltophilia
           K279a]
          Length = 629

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  +E  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHARSIEITLYKDG--SVEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 89  LILTRLHAGGKFSN 102


>gi|9622089|gb|AAF89615.1|AF167433_1 gyrase B [Thermus thermophilus]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ +   +   G     + DNG G+  +
Sbjct: 38 KEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVD 78


>gi|46199524|ref|YP_005191.1| DNA gyrase subunit B [Thermus thermophilus HB27]
 gi|46197150|gb|AAS81564.1| DNA gyrase subunit B [Thermus thermophilus HB27]
          Length = 640

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ +   +   G     + DNG G+  +
Sbjct: 44 KEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVD 84


>gi|55981555|ref|YP_144852.1| DNA gyrase subunit B [Thermus thermophilus HB8]
 gi|55772968|dbj|BAD71409.1| DNA gyrase, subunit B [Thermus thermophilus HB8]
          Length = 634

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ +   +   G     + DNG G+  +
Sbjct: 38 KEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVD 78


>gi|300934866|ref|NP_001180238.1| MORC family CW-type zinc finger protein 4 isoform A [Mus musculus]
 gi|73921009|sp|Q8BMD7|MORC4_MOUSE RecName: Full=MORC family CW-type zinc finger protein 4; AltName:
           Full=Zinc finger CW-type coiled-coil domain protein 2
          Length = 928

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|21465844|pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus
          Thermophilus Gyrase B In Complex With Novobiocin
 gi|21465845|pdb|1KIJ|B Chain B, Crystal Structure Of The 43k Atpase Domain Of Thermus
          Thermophilus Gyrase B In Complex With Novobiocin
          Length = 390

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ +   +   G     + DNG G+  +
Sbjct: 38 KEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVD 78


>gi|329942857|ref|ZP_08291636.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10]
 gi|332287450|ref|YP_004422351.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC]
 gi|313848029|emb|CBY17027.1| DNA gyrase subunit B [Chlamydophila psittaci RD1]
 gi|325506975|gb|ADZ18613.1| DNA gyrase subunit B [Chlamydophila psittaci 6BC]
 gi|328815117|gb|EGF85106.1| DNA gyrase, B subunit [Chlamydophila psittaci Cal10]
 gi|328914698|gb|AEB55531.1| DNA gyrase, B subunit [Chlamydophila psittaci 6BC]
          Length = 806

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          I      + E+++NS+D   A   S +   I   GG     I+DNG G+ 
Sbjct: 35 ITGLHHLVYEVVDNSIDEAMAGYCSEIHVRILEDGG---ITISDNGRGIP 81


>gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580]
 gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580]
          Length = 593

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A  +  V+   A  G     + D+G G+  E++P   +R  
Sbjct: 487 LIDNAIRHTNAGGTVHVDVQSAESGLK-IAVKDSGSGIPEEDLPFIFERFY 536


>gi|89898309|ref|YP_515419.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
 gi|89331681|dbj|BAE81274.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
          Length = 806

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          I      + E+++NS+D   A   S +   I   GG     I+DNG G+ 
Sbjct: 35 ITGLHHLVYEVVDNSIDEAMAGYCSEIHVRILEDGG---ITISDNGRGIP 81


>gi|62185121|ref|YP_219906.1| DNA gyrase subunit B [Chlamydophila abortus S26/3]
 gi|62148188|emb|CAH63945.1| DNA gyrase subunit B [Chlamydophila abortus S26/3]
          Length = 806

 Score = 47.4 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          I      + E+++NS+D   A   S +   I   GG     I+DNG G+ 
Sbjct: 35 ITGLHHLVYEVVDNSIDEAMAGYCSEIHVRILEDGG---ITISDNGRGIP 81


>gi|330806661|ref|YP_004351123.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374769|gb|AEA66119.1| DNA gyrase subunit B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 792

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 31  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 88

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  I G   + +  V 
Sbjct: 89  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEQLVLTVRRSGKIWEQTYIHGVPQAPMAIVG 147

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++        A     K+     +++   IR ++     V       +S + +
Sbjct: 148 DSESTGTQIH-----FKASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 202

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       E  +     +   N         F N
Sbjct: 203 LFKY--EGGLRAFVEYLNTNKTPVNQVFHFNVQREDGIGVEIALQW-NDSFNENLLCFTN 259

Query: 256 GRTVQD 261
               +D
Sbjct: 260 NIPQRD 265


>gi|297561738|ref|YP_003680712.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846186|gb|ADH68206.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 475

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 10  IINQIAAGEIIERPSIAIKELIENSLDAES-SRVETVI-AGGGKSFFQITDNGFGMTSEE 67
           + N++       R    +  LI N+ D  + SRV+ ++    G +  ++ D+G G+   E
Sbjct: 347 VANRL-------RLVRVLTNLIANA-DRHAVSRVDVIVGREDGFAVVEVHDDGSGIPPGE 398

Query: 68  IPMAVQRHC 76
                +R  
Sbjct: 399 RERIFERFA 407


>gi|126541049|emb|CAM46136.1| microrchidia 4 [Mus musculus]
          Length = 883

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|14591346|ref|NP_143424.1| DNA topoisomerase VI subunit B [Pyrococcus horikoshii OT3]
 gi|13124601|sp|O74020|TOP6B_PYRHO RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|3257993|dbj|BAA30676.1| 564aa long hypothetical typeII DNA topoisomerase subunit B
          [Pyrococcus horikoshii OT3]
          Length = 564

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I E + NSLDA  E+     +   I   GK      + DNG G+  E IP   
Sbjct: 33 IRSLTTIIHEAVTNSLDACEEAGILPTIRVEIEELGKEHYKVIVEDNGPGIPEEYIPHVF 92


>gi|329893839|ref|ZP_08269910.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088]
 gi|328923438|gb|EGG30753.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC3088]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  +S ++ V+   G     ++DNG GM  +
Sbjct: 30 RPNHLAQEVIDNSVDEALAGFASEIDVVVFKDG--SVSVSDNGRGMPVD 76


>gi|309811435|ref|ZP_07705222.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185]
 gi|308434742|gb|EFP58587.1| DNA gyrase, B subunit [Dermacoccus sp. Ellin185]
          Length = 713

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29  ELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           E+++NS+D   A  ++RV+  I    G    +++DNG G+ 
Sbjct: 78  EIVDNSVDEALAGHATRVDVTILPDNG---IRVSDNGRGIP 115


>gi|94990120|ref|YP_598220.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
 gi|94543628|gb|ABF33676.1| DNA gyrase subunit B [Streptococcus pyogenes MGAS10270]
          Length = 408

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEAD--NSITVVDDGRGIPVD 90


>gi|85057535|ref|YP_456451.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma
          AYWB]
 gi|84789640|gb|ABC65372.1| DNA gyrase subunit B [Aster yellows witches'-broom phytoplasma
          AYWB]
          Length = 671

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ +   I  G      ++DNG G+  +
Sbjct: 40 EIVDNSIDEALAGHANNITLEILPG--EIISVSDNGRGIPVD 79


>gi|39938984|ref|NP_950750.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M]
 gi|39722093|dbj|BAD04583.1| DNA gyrase beta subunit [Onion yellows phytoplasma OY-M]
          Length = 671

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++   I  G      ++DNG G+  +
Sbjct: 40 EIVDNSIDEALAGHANKITLEILPG--EIISVSDNGRGIPVD 79


>gi|21228519|ref|NP_634441.1| DNA topoisomerase VI subunit B [Methanosarcina mazei Go1]
 gi|23822274|sp|Q8PUB8|TOP6B_METMA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
           Full=Type II DNA topoisomerase VI subunit B;
           Short=TopoVI-B
 gi|152149435|pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
           Methanosarcina Mazei
 gi|20907005|gb|AAM32113.1| Type II DNA topoisomerase VI, subunit B [Methanosarcina mazei Go1]
          Length = 621

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 49/188 (26%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAV------Q 73
           +KE ++N+LDA  E+     +   +   G  +  +   DNG G+  E+IP          
Sbjct: 42  VKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS 101

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISG 125
           R    K         + G +G  +    AV  + +T      ++S+           +  
Sbjct: 102 RFHALK--------QSRGQQGIGIS--AAVLYAQMTAGRHTKILSKTSPTAPAHYYELMI 151

Query: 126 EK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                     +  VR      GT +E+      +  R             I + ++  AI
Sbjct: 152 NTSTNEPDILVDEVRDWFRPHGTQIELEMRAAYVKGRRQS----------IYEYLKATAI 201

Query: 178 AYPKVSFT 185
             P    T
Sbjct: 202 VNPHARIT 209


>gi|315646886|ref|ZP_07900001.1| two-component sensor histidine kinase [Paenibacillus vortex V453]
 gi|315277816|gb|EFU41140.1| two-component sensor histidine kinase [Paenibacillus vortex V453]
          Length = 470

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 42  VETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRH 75
           ++  +   G  +  ++ DNG G+  EE+     R+
Sbjct: 389 IKVRVEKNGLHTLIRVEDNGKGIKQEELGRIFDRY 423


>gi|256421596|ref|YP_003122249.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036504|gb|ACU60048.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 796

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--GGKSFFQITDNGFGMT 64
               I +I   E+I    IA+ ELI+NS DA++  ++  +      +    I D+G GMT
Sbjct: 88  PRARIIKIIGQELISNDVIALVELIKNSYDADAEHIDIHLNEIFSDQGEIIIKDDGTGMT 147

Query: 65  SEEIPMAVQRHCT 77
            E+I        T
Sbjct: 148 YEKIVNVWLEPAT 160


>gi|206900552|ref|YP_002250633.1| sensory transduction histidine kinase [Dictyoglomus thermophilum
          H-6-12]
 gi|206739655|gb|ACI18713.1| sensory transduction histidine kinase [Dictyoglomus thermophilum
          H-6-12]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 9/46 (19%)

Query: 30 LIENSLDAESSRVETVIAGGGKSFF------QITDNGFGMTSEEIP 69
          L++NS++A +  +   +    K         +I DNG G+  E + 
Sbjct: 11 LVQNSVEAGAKDIYIEMK---KDLINKKLMLRIKDNGKGIPPEMLE 53


>gi|322433218|ref|YP_004210439.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321165610|gb|ADW71312.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 2   KIRK---LSEKIINQIAAGEIIERPSIAIKELIENSLDAES--SRVETVI-AGGGKSFFQ 55
           KI     L  ++     AGE        I  L+ N+LDA S    V   +    GK+   
Sbjct: 119 KIHLVRNLPPELSATAHAGE----LLQVISNLLVNALDALSPDGIVTLRLSKRFGKARLL 174

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           + DNG G+T        + + T+K
Sbjct: 175 VADNGCGITDVLRDKVFEPYFTTK 198


>gi|283787083|ref|YP_003366948.1| two-component sensor kinase [Citrobacter rodentium ICC168]
 gi|282950537|emb|CBG90202.1| two-component sensor kinase [Citrobacter rodentium ICC168]
          Length = 543

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+LDA + +    +   +    G    ++ D+G G+  + I     +  +SK
Sbjct: 442 LIENALDALAQQPDGEISVSLYYRNGWLHCEVNDDGPGIEPDRIDAIFAKGVSSK 496


>gi|23978267|dbj|BAC21121.1| DNA gyrase B subunit [Nodularia sp. PCC 73104]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+  +
Sbjct: 10 VYEVVDNSIDEALAGHCTHIEVDINADG--SVTVTDDGRGIPID 51


>gi|114320108|ref|YP_741791.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226502|gb|ABI56301.1| DNA topoisomerase IV subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 630

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  ++RV+  +   G    ++ D+G GM  +
Sbjct: 31 RPNHLAQEVIDNSVDEVMAGHATRVDVTLFRDG--SLEVRDDGRGMPVD 77


>gi|283782558|ref|YP_003373312.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05]
 gi|297243224|ref|ZP_06927159.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|298253027|ref|ZP_06976819.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
 gi|283442041|gb|ADB14507.1| DNA gyrase, B subunit [Gardnerella vaginalis 409-05]
 gi|296888758|gb|EFH27495.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis AMD]
 gi|297532422|gb|EFH71308.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Gardnerella vaginalis 5-1]
          Length = 691

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I     +  ++ D+G G+  +E+P
Sbjct: 66  VYEIVDNSVDEALAGYASHIEVTILPD--NAIRVVDDGRGIPVDEVP 110


>gi|241079549|ref|XP_002408893.1| DNA gyrase subunit B, putative [Ixodes scapularis]
 gi|215492575|gb|EEC02216.1| DNA gyrase subunit B, putative [Ixodes scapularis]
          Length = 538

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 17/70 (24%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT----SEE---- 67
          + P   ++E+I+N+ D   A  +  +   +   GG    Q+ D+G G+      EE    
Sbjct: 6  DNPLHIVQEVIDNAADEALAGFARTLTVTLLEDGG---IQVEDDGRGIPVGLHPEENAPV 62

Query: 68 IPMAVQR-HC 76
          + +   R H 
Sbjct: 63 VELVFTRLHA 72


>gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 555

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   +  S       +  G  + +I+DNG G+  E++P   +R  
Sbjct: 458 LVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFY 507


>gi|148747238|ref|NP_083689.2| MORC family CW-type zinc finger protein 4 isoform B [Mus musculus]
 gi|124376452|gb|AAI32498.1| Microrchidia 4 [Mus musculus]
          Length = 883

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|106734203|gb|ABF82578.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGQGIPVD 44


>gi|1052804|emb|CAA58771.1| DNA gyrase B subunit [Streptococcus pneumoniae]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +S ++  I         + D+G G+ 
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--DSITVVDDGRGIP 86


>gi|26328587|dbj|BAC28032.1| unnamed protein product [Mus musculus]
          Length = 883

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|303244669|ref|ZP_07331001.1| DNA topoisomerase VI, B subunit [Methanothermococcus okinawensis
          IH1]
 gi|302484977|gb|EFL47909.1| DNA topoisomerase VI, B subunit [Methanothermococcus okinawensis
          IH1]
          Length = 658

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 25 IAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
            I EL+ NSLDA  E+     ++  I   G       + DNG G+  E +P   
Sbjct: 38 TIIHELVTNSLDACEEAEILPDIDIEIKKLGADHYKVVVEDNGPGIPPEFVPKVF 92


>gi|255281458|ref|ZP_05346013.1| putative sensor protein ResE [Bryantella formatexigens DSM 14469]
 gi|255267946|gb|EET61151.1| putative sensor protein ResE [Bryantella formatexigens DSM 14469]
          Length = 409

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 31  IENSLD--AESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           ++N+LD  A   ++          +   I+DNG G+  E+I    +R   SK S D
Sbjct: 312 VKNALDHTAADGKIRIAYERSSCMANIVISDNGPGILPEDIHHIFKRFYRSKNSGD 367


>gi|172035674|ref|YP_001802175.1| DNA gyrase subunit B [Cyanothece sp. ATCC 51142]
 gi|171697128|gb|ACB50109.1| DNA gyrase B subunit [Cyanothece sp. ATCC 51142]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 41 VYEVVDNSIDEALAGYCTHIEIDINPDG--SVTVTDDGRGIPTD 82


>gi|126660369|ref|ZP_01731481.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
 gi|126618342|gb|EAZ89099.1| DNA topoisomerase IV subunit B [Cyanothece sp. CCY0110]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 41 VYEVVDNSIDEALAGYCTHIEIDINPDG--SVTVTDDGRGIPTD 82


>gi|83952846|ref|ZP_00961576.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM]
 gi|83835981|gb|EAP75280.1| DNA topoisomerase IV subunit B [Roseovarius nubinhibens ISM]
          Length = 652

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+ 
Sbjct: 49 VAEIIDNSMDEAVAGHATWIEVELHENG--HVSVRDNGRGIP 88


>gi|326319204|ref|YP_004236876.1| ATP-binding region ATPase domain-containing protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323376040|gb|ADX48309.1| ATP-binding region ATPase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 483

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 22  RPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
             + A+ ++++NS+ A +S V       G +S   I D+G GM+  E+  A++       
Sbjct: 11  STAAALADIVDNSISAGASEVRIDFRWDGPESRVLILDDGRGMSDPELEGAMRLG----- 65

Query: 81  SDDFSNIHT-----FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
             D + + T      G  G  L   S+     LT+ S      +  +  +          
Sbjct: 66  --DKNPLATREAHDLGRFGMGLKTASLSQCRRLTVASVKGSERSCLRWDLDELAADPQSD 123

Query: 134 VAMNPGT 140
             +  G 
Sbjct: 124 WLLFEGP 130


>gi|297609927|ref|NP_001063871.2| Os09g0551900 [Oryza sativa Japonica Group]
 gi|255679121|dbj|BAF25785.2| Os09g0551900 [Oryza sativa Japonica Group]
          Length = 97

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 76  CTSKISD---DFS-NIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV 131
            TSK  +   D   +  +FG  GEAL S+  +S + + ++           I      ++
Sbjct: 7   ATSKFHNVMVDGEPSSRSFGLNGEALASLSDISVVEVRTKARGRPNSYCKIIKVVYTLNL 66

Query: 132 RPVAMNPGTIVEVRDLFF 149
                N  T +     FF
Sbjct: 67  LKAQHNLDTYIHSVSEFF 84


>gi|124297883|gb|AAI32154.1| Microrchidia 4 [Mus musculus]
          Length = 883

 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +    K      TD+G GMT  ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVSARTVFIDVEEVKKKPCLTFTDDGCGMTPHKLHRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 564

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   +  S       +  G  + +I+DNG G+  E++P   +R  
Sbjct: 467 LVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFY 516


>gi|238918166|ref|YP_002931680.1| DNA topoisomerase IV subunit B [Edwardsiella ictaluri 93-146]
 gi|238867734|gb|ACR67445.1| DNA topoisomerase IV, B subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 33/213 (15%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E ++        ++ DNG GM      EE    I
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHATRIEVILHPD--QSLEVIDNGRGMPVDIHPEEGVPAI 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R        Q+A    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVSVRRDGQI--YQMAFENG 145

Query: 127 KISSVRPV-----AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           +      V       N GT V              F  S +   + +T +++  A+  P 
Sbjct: 146 EKVEDLHVSGTVGRRNTGTSVHFW-------PDAQFFDSARFSVSRLTHLLKAKAVLCPG 198

Query: 182 VS--FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
           V   F      S +             E ++ +
Sbjct: 199 VEILFRDLVNGSEQRWCYQDGLTDYLMESVNGL 231


>gi|269137554|ref|YP_003294254.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202]
 gi|238551759|gb|ACR44351.1| topoisomerase IV [Edwardsiella tarda]
 gi|267983214|gb|ACY83043.1| DNA topoisomerase IV subunit B [Edwardsiella tarda EIB202]
 gi|304557627|gb|ADM40291.1| Topoisomerase IV subunit B [Edwardsiella tarda FL6-60]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 33/213 (15%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++R+E ++        ++ DNG GM      EE    I
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHATRIEVILHPD--QSLEVIDNGRGMPVDIHPEEGVPAI 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R        Q+A    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVSVRRDGQI--YQMAFENG 145

Query: 127 KISSVRPV-----AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
           +      V       N GT V              F  S +   + +T +++  A+  P 
Sbjct: 146 EKVEDLHVSGTVGRRNTGTSVHFW-------PDAQFFDSARFSVSRLTHLLKAKAVLCPG 198

Query: 182 VS--FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
           V   F      S +             E ++ +
Sbjct: 199 VEILFRDLVNGSEQRWCYQDGLTDYLMESVNGL 231


>gi|77918268|ref|YP_356083.1| two-component sensor histidine kinase PhoR [Pelobacter carbinolicus
           DSM 2380]
 gi|77544351|gb|ABA87913.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 591

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 23  PSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              A+  L++N++   DA  +  +E       ++  ++ D G G+ +E +P   +R  
Sbjct: 485 LEQAVVNLVDNAIKYSDAGGTVWIEAR-RDARQTVIEVRDQGCGIDNEHLPRLFERFY 541


>gi|298252101|ref|ZP_06975904.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546693|gb|EFH80561.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 546

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 30  LIENSLD-AESSR------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L  A +        +   +   G+    Q+ DNG G+   ++P   +R  
Sbjct: 443 LLDNALKYAPAKENGHGGIITVSLERKGQEALLQVRDNGIGIEPGDLPHIFERFY 497


>gi|240047186|ref|YP_002960574.1| DNA gyrase subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239984758|emb|CAT04732.1| DNA gyrase subunit B [Mycoplasma conjunctivae]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 28/42 (66%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +++++ VI   G  + Q++DNG G+ ++
Sbjct: 42 EIVDNAVDEALAGFANQIDVVITKDG--YVQVSDNGRGIPTD 81


>gi|237741012|ref|ZP_04571493.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13]
 gi|229431056|gb|EEO41268.1| DNA gyrase subunit B [Fusobacterium sp. 4_1_13]
          Length = 635

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A    ++E  I        ++ DNG G+ ++          EI + V  
Sbjct: 39  EIVDNSVDEALAGYCDKIEVKILPDNI--IEVIDNGRGIPTDIHPKYGKSALEIVLTVL- 95

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  +D   + + G  G  +  + A+S  L +  R      G        +      
Sbjct: 96  HAGGKFENDNYKV-SGGLHGVGVSVVNALSEWLEVEVR----KNGTIHYQKYHRGKPEED 150

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           V +     V          A     ++       +++ ++ +A     ++ T S ++ + 
Sbjct: 151 VKIIGACDVNEHGTIVRFKADAEIFETLIYNYFTLSNRLKELAYLNKGLTITLSDLRKDE 210

Query: 194 YKMNFQSTNGNFPERISQVIGEDF 217
            K      +G   + +++++ +D 
Sbjct: 211 KKEETYKFDGGILDFLNEIVKDDT 234


>gi|170078507|ref|YP_001735145.1| heat shock protein 90 [Synechococcus sp. PCC 7002]
 gi|169886176|gb|ACA99889.1| heat shock protein [Synechococcus sp. PCC 7002]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 124/445 (27%), Gaps = 61/445 (13%)

Query: 27  IKELIENSLDA----------ESSRVE-----TVIA-GGGKSFFQITDNGFGMTSEEIPM 70
           ++ELI N+ DA            S V+      +I     K    ITDNG GMT++EI  
Sbjct: 32  LRELISNAADAITKRKMAKMAGESSVDVPDGEIIIDVNKEKKQLSITDNGIGMTADEIKK 91

Query: 71  AVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMS-RPPQNNTG 118
            + +   S          K ++D       GF      S   V+  + + +         
Sbjct: 92  YINQVAFSSAEEFIQKYGKDANDLIGHFGLGF-----YSAFMVATQVEINTLSCKDGAEA 146

Query: 119 AQIAIS-GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
              +     +         + GT + +  +           ++E +E+  I  +++  + 
Sbjct: 147 VHWSCDGSPEFQLSASDKTSIGTTITLTMM---------DEETEYLESQRIRQLVKTYSD 197

Query: 178 AYP-KVSFTFSTIKSNRYKMNFQS---TNGNFPERISQVIGEDFINNAVELNEKSNEITL 233
             P  + F    I   R          T+ ++ E    +                    L
Sbjct: 198 FMPVAIRFEGEQINKQRAIWKESPQNLTDEDYLEFYRYLYPFQEDPLLWVHLNTDYPFLL 257

Query: 234 QGYTGIPTFNRG---NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEI 290
            G    P           Q  +F N   V D            E +   R  V    + +
Sbjct: 258 NGILYFPKLRPDIDVTKGQIKLFCNQVFVSD-----HCEEVIPEFLMPLRGVVDSTDIPL 312

Query: 291 DPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNA 350
           +  +  +  H     I       + + +     ++ +    S   V +     S   +  
Sbjct: 313 NVSRSALTNHRTVRRISDYIAKKVGDRLKSLYNESYSDYVKSWEDVGTFVKYGSIRDEKF 372

Query: 351 PKT------HLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
            K       +   +      T  K+ +Q N     + + S+D   +         +    
Sbjct: 373 KKQVEDILIYRTTHQPETAATTPKVEVQGNDGDVWEDVKSEDTQATSTAPYTTLKDYLER 432

Query: 405 QLGIACAQIHQNYIISQTTDGLVIV 429
                  ++      S     + + 
Sbjct: 433 NKEKHENRVFYCTDPSTQGTYIELY 457


>gi|88608222|ref|YP_506597.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600391|gb|ABD45859.1| DNA gyrase, B subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 783

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
              + E+++NS+D   A   + +E VI   G     + DNG GM ++
Sbjct: 37 LHQMVYEVVDNSVDESLAGYCTAIEVVIDVDG--SISVEDNGRGMPTD 82


>gi|167753935|ref|ZP_02426062.1| hypothetical protein ALIPUT_02220 [Alistipes putredinis DSM 17216]
 gi|167658560|gb|EDS02690.1| hypothetical protein ALIPUT_02220 [Alistipes putredinis DSM 17216]
          Length = 388

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ LI+NSLDA     R++  I+   K     I D G G+         +   T+K
Sbjct: 287 VVENLIKNSLDALQGHGRIDVEISSDDKHVMIDIKDTGKGIPKSNWKRIFEPGFTTK 343


>gi|106734147|gb|ABF82550.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734153|gb|ABF82553.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734157|gb|ABF82555.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734159|gb|ABF82556.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734161|gb|ABF82557.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734165|gb|ABF82559.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734169|gb|ABF82561.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734171|gb|ABF82562.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734175|gb|ABF82564.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734177|gb|ABF82565.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734179|gb|ABF82566.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734181|gb|ABF82567.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734183|gb|ABF82568.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734185|gb|ABF82569.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734187|gb|ABF82570.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734193|gb|ABF82573.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734197|gb|ABF82575.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734207|gb|ABF82580.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734209|gb|ABF82581.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734211|gb|ABF82582.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734215|gb|ABF82584.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734217|gb|ABF82585.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734221|gb|ABF82587.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGRGIPVD 44


>gi|152984068|ref|YP_001345400.1| DNA gyrase subunit B [Pseudomonas aeruginosa PA7]
 gi|150959226|gb|ABR81251.1| DNA gyrase, B subunit [Pseudomonas aeruginosa PA7]
          Length = 806

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 76/247 (30%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCSEISITIHTD--ESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+SH L L  R        Q+   G     +R V
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSHELRLTIRRHN-KVWEQVYHHGVPQFPLREV 159

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               G+  EV               +     +++   IR ++     V       ++ + 
Sbjct: 160 GETDGSGTEVH-----FKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       E    G      +N         F 
Sbjct: 215 ELFKY--EGGLKAFVEYLNTNKSAVNQVFHFNVQREEDGVGVEVALQWNDSFNENILCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|37548745|gb|AAN07018.1| putative sensor kinase [Bacillus subtilis]
          Length = 466

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI N+L   DA+  ++   +    ++   I DNG G+  EE+     R+ 
Sbjct: 371 LILNALVHNDAD-VKIVVQLEQKERTHVTIKDNGKGIEEEELEKVFDRYY 419


>gi|89885793|ref|YP_515991.1| hypothetical protein Rfer_4307 [Rhodoferax ferrireducens T118]
 gi|89347791|gb|ABD71993.1| hypothetical protein Rfer_4307 [Rhodoferax ferrireducens T118]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMT 64
          E     + EL++N+  A ++R++  I         I D+G G+T
Sbjct: 31 ESSFSVLGELMQNARRAGATRIDFNI-DAEMKSLSIQDDGHGIT 73


>gi|84394122|ref|ZP_00992856.1| DNA gyrase subunit B [Vibrio splendidus 12B01]
 gi|84375268|gb|EAP92181.1| DNA gyrase subunit B [Vibrio splendidus 12B01]
          Length = 805

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 78/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I     S   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCNDIIVTIHED--SSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYCHGEPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+      + +   +++   +R ++     VS      K    K
Sbjct: 159 DTDKTGTEIRF----WPSE-ETFNNIEFHYDILAKRLRELSFLNSGVSIKL-IDKREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           M+     G     +  +            +                +N G     Y F N
Sbjct: 213 MDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|313904177|ref|ZP_07837556.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470979|gb|EFR66302.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 646

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 14/67 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQRHC 76
           E+++NS+D   A   +++  V+   G     +TD+G G+           E  +    H 
Sbjct: 43  EIVDNSVDEHLAGYCTKIRVVLEADG--SCTVTDDGRGIPVNMHEKGMPAERVVLTTLHA 100

Query: 77  TSKISDD 83
             K  +D
Sbjct: 101 GGKFDND 107


>gi|311108764|ref|YP_003981617.1| HAMP domain-containing protein 16 [Achromobacter xylosoxidans A8]
 gi|310763453|gb|ADP18902.1| HAMP domain protein 16 [Achromobacter xylosoxidans A8]
          Length = 456

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 9/71 (12%)

Query: 12  NQIAAGEI--IERPS--IAIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTS 65
           N+I+AG++  ++R +    ++ L+ N+++  A ++ +   IA  G    ++ D+G G+ +
Sbjct: 317 NRISAGQVRSLDRYALLTVLRNLVRNAVEHAAPAT-LTASIAADGA--LELRDDGKGIAA 373

Query: 66  EEIPMAVQRHC 76
           E++P   +R+ 
Sbjct: 374 EDLPFLFRRYY 384


>gi|146328853|ref|YP_001209522.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A]
 gi|146232323|gb|ABQ13301.1| DNA gyrase, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 800

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 2  KIRKLSEKIINQIAAGEIIER------PSIAIKELIENSLD---AE-SSRVETVIAGGGK 51
          +IR L      +I  G  I            + E+++N++D   A   + +  +I     
Sbjct: 8  RIRVLKGLEAVRIRPGMYIGNTDDGSGLHHMVFEVVDNAIDEALAGYCTEINVIIHQN-- 65

Query: 52 SFFQITDNGFGMTSE 66
              + DNG G+  +
Sbjct: 66 ESITVRDNGRGIPVD 80


>gi|116252718|ref|YP_768556.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257366|emb|CAK08461.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 453

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 14  IAAG---------EIIER---PSI---AIKELIENSLDAE--SSRVETVIAGGGKSFFQI 56
           I AG         E +ER   PS    A+  L+ N++D    S  +   ++  G     +
Sbjct: 326 ITAGYQICFQSKVESLERRGSPSALPRAVSNLVRNAIDHGGNSGMITVSVSASGAGRISV 385

Query: 57  TDNGFGMTSEEIPMAVQRHC 76
            D G G+ +E   +  +   
Sbjct: 386 ADEGPGIPAEHRQLVFEPFY 405


>gi|77456970|ref|YP_346475.1| hypothetical protein Pfl01_0743 [Pseudomonas fluorescens Pf0-1]
 gi|77380973|gb|ABA72486.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 575

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 30/110 (27%)

Query: 23  PSIAIKELIENSLDAESSRVETVIA---------GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           P  AI ++I+NS+ AE+S +   +              S ++I D+G GM+ +EI  A  
Sbjct: 27  PYTAIMDIIDNSVTAEASTISISVELRPGKTLKNRNSVSSYKIMDDGKGMSHDEIVNAFT 86

Query: 74  --------RHCTSKISDDFSNIH-TFGFRGEALPSIGAVSHLTLMSRPPQ 114
                   ++  SK      +   + G            S +T+ S+   
Sbjct: 87  LGSKRNYGKNSLSKYGMGLKSAGLSLG------------SKITITSKKDG 124


>gi|309780006|ref|ZP_07674759.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308921176|gb|EFP66820.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 30  LIENSLDA-------ESSRVETVI---AGGGKSF----FQITDNGFGMTSEEIPMAVQRH 75
           LI N+LDA        + R++  I    G           + DNG G+  + +P   +  
Sbjct: 555 LIGNALDAINANEPVRAGRIDITIGPTEGAQAQSNQLTIAVRDNGPGIPPDAMPHLFEPF 614

Query: 76  CTSK 79
            T+K
Sbjct: 615 FTTK 618


>gi|291557755|emb|CBL34872.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
          [Eubacterium siraeum V10Sc8a]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 31 IENSLDAESS--RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ++NS+ A +S   +   I       +   I D+G GM+  E+  AV    T
Sbjct: 13 VQNSIGARASLVEITVSIDTTADTLTVI-IRDDGCGMSEAELSRAVDPFYT 62


>gi|291514712|emb|CBK63922.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [Alistipes
           shahii WAL 8301]
          Length = 391

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 26  AIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L++NSLDA     +  ++  I+   +S    + D G G+         +   T+K
Sbjct: 290 VVENLMKNSLDALQGHGA--IDVRISSDDRSVMIDVKDTGKGIPKSNWKRIFEPGFTTK 346


>gi|307728324|ref|YP_003905548.1| histidine kinase [Burkholderia sp. CCGE1003]
 gi|307582859|gb|ADN56257.1| histidine kinase [Burkholderia sp. CCGE1003]
          Length = 666

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     + R+  +I    G   F + DNG G+  + +P   +   
Sbjct: 546 RLEQVLINLLGNALDATAGMAAPRISVLIEVTAGSLSFAVGDNGPGIPEDVLPRLFEPFF 605

Query: 77  TSK 79
           T+K
Sbjct: 606 TTK 608


>gi|261403078|ref|YP_003247302.1| DNA topoisomerase VI, B subunit [Methanocaldococcus vulcanius M7]
 gi|261370071|gb|ACX72820.1| DNA topoisomerase VI, B subunit [Methanocaldococcus vulcanius M7]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I EL+ NSLDA  E+     ++  I   G       + DNG G+  E IP   
Sbjct: 31 IRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGADHYKVAVEDNGPGIPLEFIPKVF 90


>gi|186701799|ref|ZP_02971474.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
          ATCC 27818]
 gi|186701080|gb|EDU19362.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 6 str.
          ATCC 27818]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  ++     +   + D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNINVILHED--NSISVLDDGRGIPVD 80


>gi|183508547|ref|ZP_02958068.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14
          str. ATCC 33697]
 gi|182675987|gb|EDT87892.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 14
          str. ATCC 33697]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  ++     +   + D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNINVILHED--NSISVLDDGRGIPVD 80


>gi|167750762|ref|ZP_02422889.1| hypothetical protein EUBSIR_01740 [Eubacterium siraeum DSM 15702]
 gi|167656197|gb|EDS00327.1| hypothetical protein EUBSIR_01740 [Eubacterium siraeum DSM 15702]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 31 IENSLDAESS--RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ++NS+ A +S   +   I       +   I D+G GM+  E+  AV    T
Sbjct: 13 VQNSIGARASLVEITVSIDTTADTLTVI-IRDDGCGMSEAELSRAVDPFYT 62


>gi|187927295|ref|YP_001897782.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187724185|gb|ACD25350.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
          Length = 672

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 30  LIENSLDA-------ESSRVETVI---AGGGKSF----FQITDNGFGMTSEEIPMAVQRH 75
           LI N+LDA        + R++  I    G           + DNG G+  + +P   +  
Sbjct: 558 LIGNALDAINANEPVRAGRIDITIGPTEGAQAQSNQLTIAVRDNGPGIPPDAMPHLFEPF 617

Query: 76  CTSK 79
            T+K
Sbjct: 618 FTTK 621


>gi|88602335|ref|YP_502513.1| DNA gyrase, B subunit [Methanospirillum hungatei JF-1]
 gi|88187797|gb|ABD40794.1| DNA gyrase subunit B [Methanospirillum hungatei JF-1]
          Length = 675

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ VI   G     + DNG G+  +
Sbjct: 44 VYEVVDNSIDEALAGYCTHIQVVIHQDG--SVSVEDNGRGIPID 85


>gi|13358029|ref|NP_078303.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
          ATCC 700970]
 gi|170761866|ref|YP_001752551.1| DNA topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str.
          ATCC 27815]
 gi|11270883|pir||G82886 topoisomerase IV subunit B UU466 [imported] - Ureaplasma
          urealyticum
 gi|6899460|gb|AAF30878.1|AE002143_3 topoisomerase IV subunit B [Ureaplasma parvum serovar 3 str. ATCC
          700970]
 gi|168827443|gb|ACA32705.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 3 str.
          ATCC 27815]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  ++     +   + D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNINVILHED--NSISVLDDGRGIPVD 80


>gi|225574001|ref|ZP_03782646.1| hypothetical protein RUMHYD_02097 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038731|gb|EEG48977.1| hypothetical protein RUMHYD_02097 [Blautia hydrogenotrophica DSM
           10507]
          Length = 345

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 31  IENSLD--AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           ++N+ D   +   ++             I DNG G+  E++P   +R   S+ S D   +
Sbjct: 246 VKNAFDHTEKGDTIQIEWKQFASVVQILIKDNGSGIHPEDLPHIFKRFYRSRFSQDVQGV 305

Query: 88  H 88
            
Sbjct: 306 G 306


>gi|185179126|ref|ZP_02964846.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188024055|ref|ZP_02996806.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188518297|ref|ZP_03003818.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          11 str. ATCC 33695]
 gi|225550687|ref|ZP_03771636.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
          str. ATCC 27814]
 gi|225551068|ref|ZP_03772014.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
          str. ATCC 27618]
 gi|184208963|gb|EDU06006.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 5
          str. ATCC 27817]
 gi|188019091|gb|EDU57131.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 7
          str. ATCC 27819]
 gi|188998169|gb|EDU67266.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          11 str. ATCC 33695]
 gi|225378883|gb|EEH01248.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
          str. ATCC 27618]
 gi|225379841|gb|EEH02203.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
          str. ATCC 27814]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  ++     +   + D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNINVILHED--NSISVLDDGRGIPVD 80


>gi|171920400|ref|ZP_02931723.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
          ATCC 27813]
 gi|171902839|gb|EDT49128.1| DNA topoisomerase IV, B subunit [Ureaplasma parvum serovar 1 str.
          ATCC 27813]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  ++     +   + D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNINVILHED--NSISVLDDGRGIPVD 80


>gi|307543593|ref|YP_003896072.1| DNA gyrase subunit beta [Halomonas elongata DSM 2581]
 gi|307215617|emb|CBV40887.1| DNA gyrase, B subunit [Halomonas elongata DSM 2581]
          Length = 806

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S +  VI         + DNG G+ +E
Sbjct: 43 ELVDNSIDEALAGHCSEIGVVIHPD--ESITVRDNGRGIPTE 82


>gi|291556372|emb|CBL33489.1| PAS domain S-box [Eubacterium siraeum V10Sc8a]
          Length = 581

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 29  ELIEN----SL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+EN    ++    D    RVE ++   G      + DNG G+  E +    +R  
Sbjct: 472 ELVENIVSNAIKYNKDGG--RVEIMLHDVGETGCIYVRDNGIGIPKESLNRVFERFY 526


>gi|260463101|ref|ZP_05811304.1| heat shock protein Hsp90 [Mesorhizobium opportunistum WSM2075]
 gi|259031222|gb|EEW32495.1| heat shock protein Hsp90 [Mesorhizobium opportunistum WSM2075]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 41/148 (27%)

Query: 27  IKELIENSLDAE--------------SS----RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA               +     R+        K    + DNG GM+ +++
Sbjct: 36  LRELISNAADACEKLRFEAVSRPELLADDPKPRISISADPDNKQ-ITVEDNGIGMSRDDM 94

Query: 69  PMAV------------QRHCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPP 113
             A+            +R  +S  ++D   I  F  GF      S   V+  + ++SR  
Sbjct: 95  AEALGTIARSGTRAFIERVGSS--TEDTQLIGQFGVGF-----YSAFMVADRVDVVSRLA 147

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTI 141
            +    + +  G+    + P  +     
Sbjct: 148 GSEEAWRWSSDGKGSYEIAPAPLEAAPR 175


>gi|258622308|ref|ZP_05717334.1| C4-dicarboxylate transport sensor protein [Vibrio mimicus VM573]
 gi|258585632|gb|EEW10355.1| C4-dicarboxylate transport sensor protein [Vibrio mimicus VM573]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 21  ERPSIAIKELIENSLDA-ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+LDA   +      +  V         +++DNG G+  E +    + 
Sbjct: 562 QRLRQVLGNLVSNALDAMGKTPEPKLSISAVSEEHQV-IVRVSDNGCGIAPELLTTMFEP 620

Query: 75  HCTSK 79
             TSK
Sbjct: 621 FQTSK 625


>gi|239907953|ref|YP_002954694.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239797819|dbj|BAH76808.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 821

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 23  PSIAIKELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
               +  L+ N+LDA      R+         GG+    + DNG G+ + ++P       
Sbjct: 709 LEQVLSNLLLNALDAVEPGQGRITLAAAASEDGGQVNLTVADNGPGIPAVDLPHIFDPFF 768

Query: 77  TSK 79
           T+K
Sbjct: 769 TTK 771


>gi|170077957|ref|YP_001734595.1| DNA gyrase subunit B [Synechococcus sp. PCC 7002]
 gi|169885626|gb|ACA99339.1| DNA gyrase, B subunit [Synechococcus sp. PCC 7002]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 81/246 (32%), Gaps = 25/246 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ--------- 73
           + E+++NS+D   A   + +   I   G     +TDNG G+  +  P   +         
Sbjct: 39  VYEVVDNSVDEALAGYCTEINVEINADG--SVTVTDNGRGIPVDVHPSTGKSALETVMTV 96

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQN--NTGAQIAISGEKISS 130
            H   K       + + G  G  +  + A+S  + +     +       +  +   +++ 
Sbjct: 97  LHAGGKFGAGGYKV-SGGLHGVGVSVVNALSEWVEVTVWRDETTYKQRYERGVPQGELTE 155

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                   GT V        +P    F ++   + N +   +R +A     V   F+  +
Sbjct: 156 APAPQHLSGTSVCF------LPDAKIFTETTVFDYNTLAGRLRELAYLNAGVRIVFTDHR 209

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           S +   N     G   E ++ +  E    +   +     +  +Q    +       ++  
Sbjct: 210 SEKQASNTYFYEGGIKEYVAYMNREKSPLHEEIIYVTGEKNGVQLEVALQWCTDAYSDNL 269

Query: 251 YVFING 256
             F N 
Sbjct: 270 LGFANN 275


>gi|91794568|ref|YP_564219.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217]
 gi|91716570|gb|ABE56496.1| DNA topoisomerase IV subunit B [Shewanella denitrificans OS217]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 76/205 (37%), Gaps = 23/205 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM  +         +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHATKIEVVLHSD--NSLEVTDDGRGMPVDIHQEEGMSGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  R            +G 
Sbjct: 88  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEITVR-RDAQVYEMAFENGF 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           K+  +             R  F+  P+   +  S       +  ++R  A+  P +   F
Sbjct: 146 KVEELTVTGTCGRRNTGTRVHFWPDPS---YFDSANYSLTKLIYLLRAKAVLCPGLRIKF 202

Query: 187 STIKSNRYKMNFQSTNGNFPERISQ 211
           +       + +         + + +
Sbjct: 203 TN--KQNGETHEWCYESGLTDYLQE 225


>gi|323462873|pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
 gi|323462877|pdb|3LPS|A Chain A, Crystal Structure Of Pare
          Length = 408

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + ++E  +   G    +++D+G GM      EE    + 
Sbjct: 50  RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 107

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 108 LILTRLHAGGKFNN 121


>gi|288925541|ref|ZP_06419474.1| DNA gyrase, B subunit [Prevotella buccae D17]
 gi|315606674|ref|ZP_07881685.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
          ATCC 33574]
 gi|288337757|gb|EFC76110.1| DNA gyrase, B subunit [Prevotella buccae D17]
 gi|315251684|gb|EFU31662.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
          ATCC 33574]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          + E ++NS+D   A     +E  I     +   + D+G G+  +E    
Sbjct: 45 VNETVDNSIDEAMAGYCKNIEVTINED--NSITVQDDGRGIPVDEHKKL 91


>gi|256810097|ref|YP_003127466.1| DNA topoisomerase VI, B subunit [Methanocaldococcus fervens AG86]
 gi|256793297|gb|ACV23966.1| DNA topoisomerase VI, B subunit [Methanocaldococcus fervens AG86]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I EL+ NSLDA  E+     ++  I   G       + DNG G+  E IP   
Sbjct: 31 IRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGADHYKVAVEDNGPGIPLEFIPKVF 90


>gi|297588713|ref|ZP_06947356.1| sensor histidine kinase KdpD [Finegoldia magna ATCC 53516]
 gi|297574086|gb|EFH92807.1| sensor histidine kinase KdpD [Finegoldia magna ATCC 53516]
          Length = 642

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 30  LIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--KISDD 83
           L++N++   D  S  +          +  QI D+G G+   +     ++  TS  KISD+
Sbjct: 543 LVDNAIKYTDEGS-NILIKAFKKDENTIIQICDDGNGIRDNDKEKIFRKFYTSNDKISDN 601

Query: 84  FSNIH 88
             +I 
Sbjct: 602 KRSIG 606


>gi|227498001|ref|ZP_03928177.1| possible histidine kinase [Actinomyces urogenitalis DSM 15434]
 gi|226832591|gb|EEH64974.1| possible histidine kinase [Actinomyces urogenitalis DSM 15434]
          Length = 607

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 20  IERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           +ER    ++ L+ N+L+ AE ++++  +AG   +   ++ D+G GMT E       R   
Sbjct: 380 VER---IVRNLLLNALEHAEGTQIDLTVAGDEVAVAVRVRDHGVGMTPEVASKVFDRFY- 435

Query: 78  SKISDDFSNIHTFGFRGEALPSIGA 102
                D S   T G  G  L SI +
Sbjct: 436 ---RADTSRQRTLGGSGLGL-SIAS 456


>gi|166712481|ref|ZP_02243688.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + ++E  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|157963372|ref|YP_001503406.1| DNA topoisomerase IV subunit B [Shewanella pealeana ATCC 700345]
 gi|157848372|gb|ABV88871.1| DNA topoisomerase IV, B subunit [Shewanella pealeana ATCC 700345]
          Length = 631

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 33/209 (15%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +SR++ ++     +  ++ D+G GM      EE    + 
Sbjct: 34  RPNHLGQEVIDNSVDEALAGHASRIDVILHAD--NSLEVIDDGRGMPVDIHPEEGIPGVE 91

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + + + H   K S+      + G  G       AL S      + +  R           
Sbjct: 92  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSS-----RVEITVRRNAEVYEMAFE 145

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +                     +       ++  S     + +T +++  A+  P +
Sbjct: 146 HGEKVEDLHVTGTCGRRNTGTSVHFW----PDASYFDSGNFSISKLTYLLKAKAVLCPGL 201

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
              F        +           + +  
Sbjct: 202 RIKFVN--KQTNETQEWFYESGLEDYLRS 228


>gi|58582592|ref|YP_201608.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427186|gb|AAW76223.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 673

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + ++E  +   G    +++D+G GM      EE    + 
Sbjct: 75  RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 132

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 133 LILTRLHAGGKFNN 146


>gi|84624476|ref|YP_451848.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188575893|ref|YP_001912822.1| DNA topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368416|dbj|BAE69574.1| topoisomerase IV subunit B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520345|gb|ACD58290.1| DNA topoisomerase IV, B subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + ++E  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|13124830|sp|Q58434|TOP6B_METJA RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
          Length = 660

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I EL+ NSLDA  E+     ++  I   G       + DNG G+  E IP   
Sbjct: 35 IRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGADHYKVAVEDNGPGIPLEFIPKVF 94


>gi|300853844|ref|YP_003778828.1| putative two component sensor kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300433959|gb|ADK13726.1| predicted two component sensor kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 309

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 30  LIENSLD--AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LI N+L   + ++++   ++      F  + DNG G+  E++P    R  T
Sbjct: 206 LINNALKYGSHATKIGIDLSCDNDNVFISVWDNGPGIPKEDLPYVFDRLYT 256


>gi|148762423|dbj|BAF63913.1| DNA gyrase subunit B [Virgibacillus proomii]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A    R+E ++     +   + DNG G+  +
Sbjct: 13 EIIDNSIDEALAGYCDRIEVIVEKD--NSITVKDNGRGIPVD 52


>gi|86141045|ref|ZP_01059604.1| nitrogen regulation protein NtrY, putative [Leeuwenhoekiella
           blandensis MED217]
 gi|85832987|gb|EAQ51436.1| nitrogen regulation protein NtrY, putative [Leeuwenhoekiella
           blandensis MED217]
          Length = 487

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 26  AIKELIENSLDAESS------RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            +  L++N++  +++      ++   I          + DNG G+  E I    +   T+
Sbjct: 386 VVTNLVKNAI--QATEGVQDPKIRVEIKSDVDTVCILVCDNGHGIPEENIEKVFEPKFTT 443

Query: 79  K 79
           K
Sbjct: 444 K 444


>gi|331700400|ref|YP_004397359.1| DNA gyrase subunit B [Lactobacillus buchneri NRRL B-30929]
 gi|329127743|gb|AEB72296.1| DNA gyrase, B subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 647

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  ++++   +     +   +TD+G G+  +
Sbjct: 51 EIVDNGIDEALAGFATKITVTVEKD--NSITVTDDGRGIPVD 90


>gi|269127382|ref|YP_003300752.1| signal transduction histidine kinase, LytS [Thermomonospora curvata
           DSM 43183]
 gi|268312340|gb|ACY98714.1| signal transduction histidine kinase, LytS [Thermomonospora curvata
           DSM 43183]
          Length = 411

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 30  LIENSL-----D-AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAV 72
           L+EN++     D A    +  +    G      + D+G GM  E +   +
Sbjct: 289 LVENAVRHGLQDRAGPGHITIIAEDAGADAVISVEDDGVGMDPERLRKIL 338


>gi|227508132|ref|ZP_03938181.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
 gi|227523343|ref|ZP_03953392.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227089449|gb|EEI24761.1| DNA gyrase, B subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227192361|gb|EEI72428.1| DNA gyrase, B subunit [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
          Length = 647

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  ++++   +     +   +TD+G G+  +
Sbjct: 51 EIVDNGIDEALAGFATKITVTVEKD--NSITVTDDGRGIPVD 90


>gi|227511156|ref|ZP_03941205.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085638|gb|EEI20950.1| DNA gyrase, B subunit [Lactobacillus buchneri ATCC 11577]
          Length = 647

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  ++++   +     +   +TD+G G+  +
Sbjct: 51 EIVDNGIDEALAGFATKITVTVEKD--NSITVTDDGRGIPVD 90


>gi|331266709|ref|YP_004326339.1| DNA gyrase, B subunit [Streptococcus oralis Uo5]
 gi|326683381|emb|CBZ00999.1| DNA gyrase, B subunit [Streptococcus oralis Uo5]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|315612864|ref|ZP_07887775.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis ATCC 49296]
 gi|315314974|gb|EFU63015.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          sanguinis ATCC 49296]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|307709096|ref|ZP_07645555.1| DNA gyrase, B subunit [Streptococcus mitis SK564]
 gi|307620042|gb|EFN99159.1| DNA gyrase, B subunit [Streptococcus mitis SK564]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|307708511|ref|ZP_07644976.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261]
 gi|307615427|gb|EFN94635.1| DNA gyrase, B subunit [Streptococcus mitis NCTC 12261]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|293365094|ref|ZP_06611811.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          oralis ATCC 35037]
 gi|307702197|ref|ZP_07639157.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037]
 gi|322374607|ref|ZP_08049121.1| DNA gyrase, B subunit [Streptococcus sp. C300]
 gi|291316544|gb|EFE56980.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          oralis ATCC 35037]
 gi|307624210|gb|EFO03187.1| DNA gyrase, B subunit [Streptococcus oralis ATCC 35037]
 gi|321280107|gb|EFX57146.1| DNA gyrase, B subunit [Streptococcus sp. C300]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|270293047|ref|ZP_06199258.1| DNA gyrase subunit B [Streptococcus sp. M143]
 gi|270279026|gb|EFA24872.1| DNA gyrase subunit B [Streptococcus sp. M143]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|257437729|ref|ZP_05613484.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200036|gb|EEU98320.1| DNA gyrase, B subunit [Faecalibacterium prausnitzii A2-165]
          Length = 664

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + +E  I        Q+TDNG G+  +
Sbjct: 53 VYEIVDNAIDEALAGYCNHIEVKILKNNI--IQVTDNGRGIPVD 94


>gi|98991106|gb|ABF60571.1| DNA gyrase subunit B [Spiroplasma melliferum KC3]
          Length = 558

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 84/246 (34%), Gaps = 29/246 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQ-RH 75
           E+++NS+D   A  +++++ ++         + DNG G+  E         +       H
Sbjct: 14  EIVDNSIDEVLANFANKIKIILNKD--ESITVIDNGRGIPIEIHPKTKVSTLETVFTILH 71

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K   +   I + G  G     + A+S  L +  R        +    G+ ++ ++ V
Sbjct: 72  AGGKFDSNTYKI-SGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEV 130

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST----IK 190
                T   V      +P    F ++     + I + I+++A     +  +        +
Sbjct: 131 GSTSETGTTVTF----LPDEKIFKETTIFSFSTIQNRIKQLAFLNKGLEISLVDLREEDE 186

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                  F +   ++   +++ IG    +       + N +   G      +N   +   
Sbjct: 187 EKTVLYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGL----QYNDNYSENI 242

Query: 251 YVFING 256
           + F N 
Sbjct: 243 FSFCNN 248


>gi|27530058|dbj|BAC53884.1| DNA gyrase B subunit [Legionella jamestowniensis]
          Length = 285

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I   G     + D+G G+  +
Sbjct: 7  EVVDNSIDEALAGYCTEIQVTIH--GDESITVKDDGRGIPVD 46


>gi|329121792|ref|ZP_08250408.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
          micraerophilus DSM 19965]
 gi|327468065|gb|EGF13553.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Dialister
          micraerophilus DSM 19965]
          Length = 646

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  +   G     + DNG G+ 
Sbjct: 52 VYEVVDNSIDEALAGFCTHIEVSLNDDG--SCTVVDNGRGIP 91


>gi|332716087|ref|YP_004443553.1| C4-dicarboxylate transport sensor protein [Agrobacterium sp. H13-3]
 gi|325062772|gb|ADY66462.1| C4-dicarboxylate transport sensor protein [Agrobacterium sp. H13-3]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 16/80 (20%)

Query: 30  LIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK----- 79
           L++N+L+A    +++RVE  +   G      ++DNG G+             TSK     
Sbjct: 539 LLQNALEATEAIDAARVEVRVREEGDMVLLSVSDNGTGIPEAIRAQLFSPFNTSKESGLG 598

Query: 80  ----ISDDFSNIHTFGFRGE 95
               IS+D ++   +G R E
Sbjct: 599 LGLVISNDIAS--DYGGRIE 616


>gi|313892202|ref|ZP_07825795.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
 gi|313119340|gb|EFR42539.1| DNA gyrase, B subunit [Dialister microaerophilus UPII 345-E]
          Length = 646

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  +   G     + DNG G+ 
Sbjct: 52 VYEVVDNSIDEALAGFCTHIEVSLNDDG--SCTVVDNGRGIP 91


>gi|289193111|ref|YP_003459052.1| DNA topoisomerase VI, B subunit [Methanocaldococcus sp. FS406-22]
 gi|288939561|gb|ADC70316.1| DNA topoisomerase VI, B subunit [Methanocaldococcus sp. FS406-22]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I EL+ NSLDA  E+     ++  I   G       + DNG G+  E IP   
Sbjct: 31 IRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGADHYKVAVEDNGPGIPLEFIPKVF 90


>gi|126663049|ref|ZP_01734047.1| sensor histidine kinase [Flavobacteria bacterium BAL38]
 gi|126624707|gb|EAZ95397.1| sensor histidine kinase [Flavobacteria bacterium BAL38]
          Length = 385

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 30  LIENSLDA----ESSRVET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA     S  +    +        +ITD G G+   +     +   T+K
Sbjct: 287 LVKNAIDAMKGKGSLNIAISELED--IVKIKITDTGKGIPKNQFSKVFEPGFTTK 339


>gi|42524272|ref|NP_969652.1| DNA topoisomerase VI subunit B [Bdellovibrio bacteriovorus HD100]
 gi|39576480|emb|CAE80645.1| type II DNA topoisomerase VI, subunit B [Bdellovibrio bacteriovorus
           HD100]
          Length = 589

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 27  IKELIENSLDAESSR-------VETVIAGGGKS------FFQITDNGFGMTSEEIPMAVQ 73
           +KE ++NSLDA  S        VE    G G +         + DNG G+  E++     
Sbjct: 33  LKEAVDNSLDACESAGILPDLLVEISKVGAGSTKNTDLIRIVVEDNGPGIEGEDLAKVYG 92

Query: 74  RH-CTSKI 80
            +  +SK 
Sbjct: 93  EYLASSKF 100


>gi|154245498|ref|YP_001416456.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159583|gb|ABS66799.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 529

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 14/83 (16%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ES----SRVETVI-AGGGKSFFQI 56
           RKL + +++ I   +++         LI N++D+   +     ++      GGG+   ++
Sbjct: 405 RKLPQAVVDPIELEQVLHN-------LIRNAVDSLDGAAQPEKKIVIRTGTGGGQVEIRV 457

Query: 57  TDNGFGMTSEEIPMAVQRHCTSK 79
            D G G+    +P   +   T+K
Sbjct: 458 ADTGPGIAPAVLPRLFEPFFTTK 480


>gi|116753912|ref|YP_843030.1| DNA topoisomerase VI subunit B [Methanosaeta thermophila PT]
 gi|116665363|gb|ABK14390.1| DNA topoisomerase VI, B subunit [Methanosaeta thermophila PT]
          Length = 613

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 25 IAIKELIENSLDA--ESS---RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAV 72
            +KE ++NSLDA  ++     +   I   G      + DNG G+   EIP   
Sbjct: 38 TCVKEAVDNSLDACEDAGILPDIFVQIKRTGELYRVIVEDNGPGIVPSEIPRVF 91


>gi|301057364|ref|ZP_07198482.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448594|gb|EFK12241.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 879

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 26/95 (27%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKE---LIENSLDA--ESSRVET--------------- 44
           +L E + N I +G     P   +K    L+ N+ +A   S  V                 
Sbjct: 598 QLDENLKN-I-SG----SPVHILKAVMNLVANASEAISGSGNVTIGTMHRSIDHPVRGYD 651

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  G  S   +TD+G G++ +++    +   T K
Sbjct: 652 DVEIGEYSVLSVTDDGSGISPDDLERIFEPFYTKK 686


>gi|148252728|ref|YP_001237313.1| hypothetical protein BBta_1158 [Bradyrhizobium sp. BTAi1]
 gi|146404901|gb|ABQ33407.1| hypothetical protein BBta_1158 [Bradyrhizobium sp. BTAi1]
          Length = 971

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 10 IINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           I+ +  G+I + P  A+ EL +N+ DA +  V   I GG      + D+G GM+ E+  
Sbjct: 13 TIDHLGRGQIADAP-TAVSELWKNAYDAYAKNVALHIFGGSPEVAAVFDDGIGMSRED-- 69

Query: 70 MAVQR----HCTSKISD-DFSNIHTFG 91
            +QR       SK  + D +   TFG
Sbjct: 70 -VIQRWLVIGTESKFDNADTTPPETFG 95


>gi|85058249|ref|YP_453951.1| DNA topoisomerase IV subunit B [Sodalis glossinidius str.
           'morsitans']
 gi|84778769|dbj|BAE73546.1| topoisomerase IV subunit B [Sodalis glossinidius str. 'morsitans']
          Length = 631

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 23/207 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + R++ ++        ++TD+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHARRIDVILHPD--QSLEVTDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  R   N          + 
Sbjct: 90  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRNGNVYRIAFENGDKV 148

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--FT 185
                               +       +F  S +   + +T +++  A+  P V   F 
Sbjct: 149 EDLSVVGTCPKRNTGTSVHFW----PDEHFFDSPRFSVSRLTHLLKAKAVLCPGVEIVFQ 204

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQV 212
                + +             E I+ +
Sbjct: 205 DRVNNTEQRWCYEAGLTDYLNEAINGL 231


>gi|116619148|ref|YP_821304.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076]
 gi|116222310|gb|ABJ81019.1| DNA gyrase subunit B [Candidatus Solibacter usitatus Ellin6076]
          Length = 815

 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 26/248 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAV-----Q 73
           + E+++NS+D   A  ++ +E  I     +   + D+G G+      EE   A      +
Sbjct: 49  VYEVVDNSVDEALAGYATHIEVTIHDD--NSVTVEDDGRGIPVGIHEEEGVSAAQVVMTK 106

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVR 132
            H   K   +   + + G  G  +  + A+S  L L           + +    K   VR
Sbjct: 107 LHAGGKFDSNSYKV-SGGLHGVGVSCVNALSEKLELEIWREGYTWTQEYSCGKPKADLVR 165

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
                  T   V     +    +          + +   +R +A     +  T +  + +
Sbjct: 166 AGKAGKRTGTRVTFKPDSTIMEVAVF-----NYDTLAQRLRELAFLNKGLKITLTDERVD 220

Query: 193 RYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIP---TFNRGNAN 248
             K+      G   E I  +  G+  ++      E   E+  +G   +     +N   + 
Sbjct: 221 PEKVTPFEYQGGISEFIKHLNRGKSVLHEKPIHFEAEREMPEKGTITMEVALQYNDAYSE 280

Query: 249 QFYVFING 256
             + F N 
Sbjct: 281 NVFSFANN 288


>gi|332881729|ref|ZP_08449377.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332680368|gb|EGJ53317.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 655

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E ++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 45 VYETVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 86


>gi|330997801|ref|ZP_08321636.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329569689|gb|EGG51454.1| DNA gyrase, B subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 655

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E ++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 45 VYETVDNSIDEALAGYCTHIEVTINED--NSITVQDNGRGIPVD 86


>gi|325567637|ref|ZP_08144304.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
          casseliflavus ATCC 12755]
 gi|325159070|gb|EGC71216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Enterococcus
          casseliflavus ATCC 12755]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++ +I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASSIQVIIEPD--NSITVVDDGRGIPVD 90


>gi|269314035|gb|ACZ36919.1| DNA gyrase B [Mycobacterium chelonae]
          Length = 651

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ VE   +  GG    Q+ D+G G+ 
Sbjct: 37 EVVDNSVDEAMAGYATTVEVTMLEDGG---IQVKDDGRGIP 74


>gi|258624825|ref|ZP_05719753.1| C4-dicarboxylate transport sensor protein [Vibrio mimicus VM603]
 gi|258582823|gb|EEW07644.1| C4-dicarboxylate transport sensor protein [Vibrio mimicus VM603]
          Length = 669

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 21  ERPSIAIKELIENSLDA-ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+LDA   +      +  V         +++DNG G+  E +    + 
Sbjct: 562 QRLRQVLGNLVSNALDAMGKTPEPKLSISAVSEEHQV-IVRVSDNGCGIAPELLTTMFEP 620

Query: 75  HCTSK 79
             TSK
Sbjct: 621 FQTSK 625


>gi|257875897|ref|ZP_05655550.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
 gi|257810063|gb|EEV38883.1| DNA gyrase B subunit [Enterococcus casseliflavus EC20]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++ +I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASSIQVIIEPD--NSITVVDDGRGIPVD 90


>gi|257866280|ref|ZP_05645933.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
 gi|257873204|ref|ZP_05652857.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
 gi|257800238|gb|EEV29266.1| DNA gyrase B subunit [Enterococcus casseliflavus EC30]
 gi|257807368|gb|EEV36190.1| DNA gyrase B subunit [Enterococcus casseliflavus EC10]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++ +I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASSIQVIIEPD--NSITVVDDGRGIPVD 90


>gi|254453955|ref|ZP_05067392.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238]
 gi|198268361|gb|EDY92631.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 238]
          Length = 703

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  ++ +E  +   G     + DNG G+ 
Sbjct: 99  VAEIVDNSMDEAVAGHATWIEVELHANG--HVTVRDNGRGIP 138


>gi|117926310|ref|YP_866927.1| multi-sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
 gi|117610066|gb|ABK45521.1| multi-sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
          Length = 801

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 24/102 (23%)

Query: 5   KLSEKIINQIA-AGEII-ERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNG 60
           +L + +IN I  + E I +R S           D  +  +  V     GG    Q+ DNG
Sbjct: 682 QLLQLVINLIKNSQEAIGQRLST----------DPAAGWIHIVARRDEGGGLMLQVQDNG 731

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGA 102
            G+  E++    +   T+K      N  T GF    L S  +
Sbjct: 732 CGIAPEQVAHVFRFGYTTK------NRGT-GF---GLHSAAS 763


>gi|315441702|ref|YP_004074581.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1]
 gi|315260005|gb|ADT96746.1| DNA gyrase subunit B [Mycobacterium sp. Spyr1]
          Length = 675

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 37/179 (20%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  +++V+  I   GG    Q+TD+G G+            ++ M V  
Sbjct: 48  EVVDNAVDEAMAGFATKVDVRILEDGG---VQVTDDGRGIPVSMHSTGIPTIDVVMTVL- 103

Query: 75  HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
           H   K  +    + + G  G       AL S      L    R   +        S    
Sbjct: 104 HAGGKFEEGAYQV-SGGLHGVGVSVVNALSS-----RLEADVRKDGHEWFQTYDRSVPGT 157

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
                     GT +          A     ++   +   I   ++ MA     ++   +
Sbjct: 158 LRKGDPTDKTGTTIRFW-------ADPEIFETTNYDFETIARRLQEMAFLNKGLTIELT 209


>gi|315124260|ref|YP_004066264.1| hypothetical protein ICDCCJ07001_699 [Campylobacter jejuni subsp.
          jejuni ICDCCJ07001]
 gi|315017982|gb|ADT66075.1| hypothetical protein ICDCCJ07001_699 [Campylobacter jejuni subsp.
          jejuni ICDCCJ07001]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 10 IINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG------GGKS-FFQITDNGFG 62
           +  I +   I R +  I E I+N++DA+++R++            GK     I DNG G
Sbjct: 9  TVKTIKSDSTIMRLNP-ISEAIKNAIDAKATRIDICFEECEGNSLFGKGISISIKDNGAG 67


>gi|312138293|ref|YP_004005629.1| two component system sensor kinase [Rhodococcus equi 103S]
 gi|311887632|emb|CBH46944.1| putative two component system sensor kinase [Rhodococcus equi 103S]
          Length = 545

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA-----ESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               +  L++N++DA     ++   VE  +         ++ D+G GM  + +  A  R 
Sbjct: 423 LVTVVGNLVDNAIDAARSEGDARPWVEVTVTEEDSMLVIRVADSGPGMDPDALAQATTRG 482

Query: 76  CTSK 79
            ++K
Sbjct: 483 YSTK 486


>gi|229135508|ref|ZP_04264294.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
 gi|228647973|gb|EEL04022.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
          Length = 484

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E+ ++   + +   K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEAKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|300778803|ref|ZP_07088661.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
          gleum ATCC 35910]
 gi|300504313|gb|EFK35453.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
          gleum ATCC 35910]
          Length = 644

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I  G  +  +++DNG G+  +
Sbjct: 40 VYEVVDNSIDEALAGYCDTIFVSIKEG--NGIEVSDNGRGIPVD 81


>gi|254511768|ref|ZP_05123835.1| C4-dicarboxylate transport sensor protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221535479|gb|EEE38467.1| C4-dicarboxylate transport sensor protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 593

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 12  NQIAA--GEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTS 65
            QI A  GE+  R       LI N+ DA     + ++   +  G      + D G G+  
Sbjct: 474 AQIHAWGGEV--RLVQVFVNLINNAADAMVDQSARKIAISLTEGQPIRVSVRDTGPGI-- 529

Query: 66  EEIPMAVQRHCTSK 79
           E+     +   T+K
Sbjct: 530 EDPDRVFEPFYTTK 543


>gi|217967306|ref|YP_002352812.1| histidine kinase [Dictyoglomus turgidum DSM 6724]
 gi|217336405|gb|ACK42198.1| histidine kinase [Dictyoglomus turgidum DSM 6724]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 30 LIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIP 69
          L++NS++A +  +   +       K F +I D+G G+  E + 
Sbjct: 11 LVQNSIEAGARNIYIEMKKDLENKKLFLKIKDDGKGIPPEVLE 53


>gi|71907910|ref|YP_285497.1| ATP-binding region, ATPase-like [Dechloromonas aromatica RCB]
 gi|71847531|gb|AAZ47027.1| ATP-binding region, ATPase-like protein [Dechloromonas aromatica
          RCB]
          Length = 546

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 27 IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH------CTS 78
          + EL++N+  A + R+E           ++ D+G G+  ++    +  H       TS
Sbjct: 31 VSELLQNARRAGAMRIEIHY-DATTQVLRVEDDGRGL--DDFQKLLSFHESGWDAATS 85


>gi|119355929|ref|YP_910573.1| histidine kinase [Chlorobium phaeobacteroides DSM 266]
 gi|119353278|gb|ABL64149.1| histidine kinase [Chlorobium phaeobacteroides DSM 266]
          Length = 987

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + I   S AI EL +N+ DA +  VE  +     S   I D+G GM+  E  
Sbjct: 17 QQIADASTAISELFKNAHDAYADNVEVDLFK-SDSLLVIRDDGIGMSPSEFE 67


>gi|331006356|ref|ZP_08329667.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989]
 gi|330419838|gb|EGG94193.1| Topoisomerase IV subunit B [gamma proteobacterium IMCC1989]
          Length = 628

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 29/187 (15%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +  +E  +         ++D+G GM  +          
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKTIEVTLHKN--QAITVSDDGRGMPVDMHPVQKKPGV 86

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
           E+ ++   H   K SD      + G  G  +  + A+S   ++S              G+
Sbjct: 87  EVILSTL-HAGGKFSDKNYE-FSGGLHGVGVSVVNALSQKLVVSIKRDGKVHDIEFSHGD 144

Query: 127 KISSVRPV----AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           K+  +         N GT V      + +PA   +  S +   + +  V+R  A+  P +
Sbjct: 145 KVKDLHVTGECGKRNTGTTV------YFLPAP-EYFDSPKFSVSRLRHVLRAKAVLCPGL 197

Query: 183 SFTFSTI 189
              F+  
Sbjct: 198 KIVFTNE 204


>gi|254448183|ref|ZP_05061646.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015]
 gi|198262309|gb|EDY86591.1| DNA topoisomerase IV, B subunit [gamma proteobacterium HTCC5015]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + ++E V+   G    +++D+G GM  +
Sbjct: 29 TRPNHLAQEVIDNSVDEAMAGHAKKIEVVLYKDG--SLEVSDDGRGMPVD 76


>gi|15829210|ref|NP_326570.1| DNA gyrase subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14090154|emb|CAC13912.1| DNA GYRASE SUBUNIT B [Mycoplasma pulmonis]
          Length = 644

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S++   +     +   I D+G G+  +
Sbjct: 45 EIVDNSVDETMAGFASQITITLDND--NLITIEDDGRGIPVD 84


>gi|55821497|ref|YP_139939.1| DNA gyrase subunit B [Streptococcus thermophilus LMG 18311]
 gi|55823426|ref|YP_141867.1| DNA gyrase subunit B [Streptococcus thermophilus CNRZ1066]
 gi|116628216|ref|YP_820835.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
 gi|55737482|gb|AAV61124.1| DNA gyrase B subunit [Streptococcus thermophilus LMG 18311]
 gi|55739411|gb|AAV63052.1| DNA gyrase B subunit [Streptococcus thermophilus CNRZ1066]
 gi|116101493|gb|ABJ66639.1| DNA gyrase subunit B [Streptococcus thermophilus LMD-9]
 gi|312278836|gb|ADQ63493.1| DNA gyrase subunit B [Streptococcus thermophilus ND03]
          Length = 650

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFASHIKVFIEPD--NSITVVDDGRGIPVD 90


>gi|288958109|ref|YP_003448450.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910417|dbj|BAI71906.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 651

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 24  SIAIKELIENSLD-A----ESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHC 76
           +  +  L+ NSL  A    +S R++  I   G  + ++  +D+G G+   ++P       
Sbjct: 540 ARVLTHLVRNSLTHAFRHEQSGRIDIEIHADGDDWIEVVHSDDGQGILESDLPRLFDPFF 599

Query: 77  T 77
           T
Sbjct: 600 T 600


>gi|167753648|ref|ZP_02425775.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM
          17216]
 gi|167658273|gb|EDS02403.1| hypothetical protein ALIPUT_01928 [Alistipes putredinis DSM
          17216]
          Length = 652

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I     +   + DNG G+ ++
Sbjct: 49 VYEVVDNSIDEALAGHCTDIDVTINED--NSITVKDNGRGIPTD 90


>gi|158424137|ref|YP_001525429.1| DNA topoisomerase IV subunit B [Azorhizobium caulinodans ORS 571]
 gi|158331026|dbj|BAF88511.1| gram negative topoisomerase IV subunit B [Azorhizobium caulinodans
           ORS 571]
          Length = 672

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+NS+D   A  ++ +E  ++  G     + DNG G+  EE P 
Sbjct: 65  EVIDNSMDEAVAGHATFIEVQLSNDG--SLTVIDNGRGIPVEEHPK 108


>gi|77460846|ref|YP_350353.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
 gi|77384849|gb|ABA76362.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 756

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 9/68 (13%)

Query: 5  KLSEKIINQ-IAAGEIIERPSIAIKELIENSLDAESSRVETVIAGG--GKSFFQITDNGF 61
          +L  ++  Q I++  +      AI ELI+NS DA+S +V+              I D+G 
Sbjct: 15 RLPIQLGRQSISSSMV------AISELIKNSYDADSKKVKLTFTNSKDNLPSLIIEDDGE 68

Query: 62 GMTSEEIP 69
          GM+ E++ 
Sbjct: 69 GMSYEDVK 76


>gi|23097461|ref|NP_690927.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
 gi|22775684|dbj|BAC11962.1| DNA gyrase subunit B [Oceanobacillus iheyensis HTE831]
          Length = 641

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++ V+     +   + DNG G+  +
Sbjct: 49 EIVDNSIDEALAGYCDHIQVVVEED--NSITVKDNGRGIPVD 88


>gi|326798147|ref|YP_004315966.1| histidine kinase [Sphingobacterium sp. 21]
 gi|326548911|gb|ADZ77296.1| histidine kinase [Sphingobacterium sp. 21]
          Length = 675

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 26  AIKELIENSL-DAESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
            ++ELI N++  A ++ +    I   GK F  + D+G G  +++
Sbjct: 583 ILQELINNAVRHAGANTILVQCIQNDGKVFITVEDDGCGFDTDD 626


>gi|260789898|ref|XP_002589981.1| hypothetical protein BRAFLDRAFT_281429 [Branchiostoma floridae]
 gi|229275168|gb|EEN45992.1| hypothetical protein BRAFLDRAFT_281429 [Branchiostoma floridae]
          Length = 569

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 29 ELIENSLDAESSRVET------VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          EL++N+ DA ++++         + GG        D+G GM   E    +Q   +SK + 
Sbjct: 33 ELVDNARDAAATKIHVYTVPKKEVRGG--YLLCFLDDGEGMDPGEAASVIQFGKSSKRAV 90

Query: 83 DFSNIHTFG 91
          D   I  +G
Sbjct: 91 DSQMIGQYG 99


>gi|260802163|ref|XP_002595962.1| hypothetical protein BRAFLDRAFT_60968 [Branchiostoma floridae]
 gi|229281215|gb|EEN51974.1| hypothetical protein BRAFLDRAFT_60968 [Branchiostoma floridae]
          Length = 769

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 29 ELIENSLDAESSRVET------VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          EL++N+ DA ++++         + GG        D+G GM   E    +Q   +SK + 
Sbjct: 33 ELVDNARDAAATKIHVYTVPKKEVRGG--YLLCFLDDGEGMDPGEAASVIQFGKSSKRAV 90

Query: 83 DFSNIHTFG 91
          D   I  +G
Sbjct: 91 DSQMIGQYG 99


>gi|307154719|ref|YP_003890103.1| DNA gyrase subunit B [Cyanothece sp. PCC 7822]
 gi|306984947|gb|ADN16828.1| DNA gyrase, B subunit [Cyanothece sp. PCC 7822]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDINPDG--SVTVTDDGRGIPTD 80


>gi|153873771|ref|ZP_02002242.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS]
 gi|152069763|gb|EDN67758.1| Gram negative topoisomerase IV, subunit B [Beggiatoa sp. PS]
          Length = 632

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+++NS+D   A  +++++ V+   G     + DNG GM  +
Sbjct: 37 TRPNHLAQEVVDNSVDEAIAGYANQIDVVLHADG--SLSVRDNGRGMPVD 84


>gi|154251632|ref|YP_001412456.1| hypothetical protein Plav_1178 [Parvibaculum lavamentivorans
          DS-1]
 gi|154253988|ref|YP_001414812.1| hypothetical protein Plav_3557 [Parvibaculum lavamentivorans
          DS-1]
 gi|154155582|gb|ABS62799.1| conserved hypothetical protein [Parvibaculum lavamentivorans
          DS-1]
 gi|154157938|gb|ABS65155.1| conserved hypothetical protein [Parvibaculum lavamentivorans
          DS-1]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 29 ELIENSLDAESSRVETVIAGGGKS-----FFQITDNGFGMTSEEIP 69
          E + N+LDA ++ V   I              ++DNG G T E   
Sbjct: 24 EALANALDAGATDVSIDIDVQAFDKPDTLKITVSDNGDGFTDENFE 69


>gi|167037867|ref|YP_001665445.1| histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116284|ref|YP_004186443.1| ATP-binding region ATPase domain-containing protein
          [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856701|gb|ABY95109.1| histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929375|gb|ADV80060.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
          Length = 181

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIA-GGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  +   I     K   ++   D+G GM+ E +        T
Sbjct: 11 LSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMSKELLKKVTDPFIT 61


>gi|254227899|ref|ZP_04921329.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262396114|ref|YP_003287967.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151939395|gb|EDN58223.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339708|gb|ACY53502.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 690

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDN 59
           ++   + N I  GE  +R    +  LI N+LDA    ++ ++   +     +    ++DN
Sbjct: 567 RIPNDLPNII--GEE-QRLQQVLGNLISNALDAMKETQAPQLMIAVTPTTDNVEVVVSDN 623

Query: 60  GFGMTSEEIPMAVQRHCTS-KISDDF 84
           G G+ S+++    +   TS KI +  
Sbjct: 624 GCGVPSDQLDTMFEPFQTSKKIGEGL 649


>gi|298290105|ref|YP_003692044.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
 gi|296926616|gb|ADH87425.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
          Length = 383

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 19  IIERPSIA---IKELIENSLDAESS----RVETVIAGG-GKSFFQITDNGFGMTSEEIPM 70
           +   P      +  L+ N+++A +      +        G    ++ DNG G+  E +  
Sbjct: 266 VSVDPVQVQQIVVNLVRNAIEAAAGMTDPAIHIRTRSADGTVVLEVQDNGPGIAPEALSK 325

Query: 71  AVQRHCTSK 79
             +   +SK
Sbjct: 326 LFEAFASSK 334


>gi|291529243|emb|CBK94829.1| DNA topoisomerase IV subunit B [Eubacterium rectale M104/1]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A +   +   +   G     + DNG G+ 
Sbjct: 43 EIVDNSVDEHLAGACDTIRVTLEKNG--SCTVEDNGRGIP 80


>gi|291525298|emb|CBK90885.1| DNA topoisomerase IV subunit B [Eubacterium rectale DSM 17629]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A +   +   +   G     + DNG G+ 
Sbjct: 43 EIVDNSVDEHLAGACDTIRVTLEKNG--SCTVEDNGRGIP 80


>gi|238924637|ref|YP_002938153.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
          33656]
 gi|238876312|gb|ACR76019.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
          33656]
          Length = 640

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A +   +   +   G     + DNG G+ 
Sbjct: 43 EIVDNSVDEHLAGACDTIRVTLEKNG--SCTVEDNGRGIP 80


>gi|148656775|ref|YP_001276980.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148568885|gb|ABQ91030.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 759

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 37/253 (14%)

Query: 15  AAGEII--ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMA 71
            +GE++         + L+       ++ + +  +  G  +   ++DNG GM +  +   
Sbjct: 509 RSGEVVISTDVRSVDRALL-------ATAIGSDGLEEGAYAVLTVSDNGCGMDAATLERI 561

Query: 72  VQRHCTSK-ISDDFSNIHTF----GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
                T+K I        T     G RG    +I       + S P +  T         
Sbjct: 562 FDPFFTTKFIGRGLGLPATLGIVRGHRG----AI------RVTSTPGEGTTVTIFLPEVH 611

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--- 183
            +S      M    +  VR     I   ++  +S +     + + +   A+         
Sbjct: 612 SLSPQVETFMPSSRMSIVRTNCSRIFLVVDDEESTRAVAARMLEWMGHPALTTGDAETAV 671

Query: 184 -FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVEL--------NEKSNEITLQ 234
                  +     +    ++ N    + ++         + +        + +   + L 
Sbjct: 672 ILARQHREHLACVLLDLPSDHNLDRTVGELRQVCTDMPVILMSGYPEEIASRRFAHLGLS 731

Query: 235 GYTGIPTFNRGNA 247
           G+   P  +    
Sbjct: 732 GFLQKPFTSYELR 744


>gi|27262246|gb|AAN87404.1| DNA gyrase subunit B [Heliobacillus mobilis]
          Length = 641

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E +I     +  +++DNG G+  +
Sbjct: 49 VYEIVDNSIDEALAGYCDTIEVIIHED--NSIEVSDNGRGIPVD 90


>gi|322835710|ref|YP_004215736.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Rahnella sp. Y9602]
 gi|321170911|gb|ADW76609.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Rahnella sp. Y9602]
          Length = 539

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 30  LIENSLDA------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+LDA          V      G  +   ++D+G G+  E I    ++  +SK
Sbjct: 438 LIENALDALGDQPDGEVSVLLHYQNGSLACI-VSDDGPGIQPENIDAIFEKGVSSK 492


>gi|319440154|ref|ZP_07989310.1| DNA gyrase subunit B [Corynebacterium variabile DSM 44702]
          Length = 686

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  VE  +   G    Q++DNG G+  E
Sbjct: 55 EVVDNSVDEAMAGFADHVEVTLKDDG--SVQVSDNGRGIPVE 94


>gi|288937411|ref|YP_003441470.1| histidine kinase [Klebsiella variicola At-22]
 gi|288892120|gb|ADC60438.1| histidine kinase [Klebsiella variicola At-22]
          Length = 763

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 26 AIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          A+ ELI+NS DA+S  VE ++         S   I D G GM+ ++      R  TS
Sbjct: 31 ALSELIKNSYDADSPFVEIILENIKDISSDSKIIIRDEGEGMSWDDFKNNWMRISTS 87


>gi|114569878|ref|YP_756558.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10]
 gi|114340340|gb|ABI65620.1| DNA topoisomerase IV subunit B [Maricaulis maris MCS10]
          Length = 672

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  + R+E  +     S+  +TDNG G+  +
Sbjct: 63  EILDNSMDEAVAGWADRIEVAVDED--SYITVTDNGRGIPVD 102


>gi|106734151|gb|ABF82552.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGQGIPVD 44


>gi|71725275|ref|YP_272294.1| hypothetical protein PSPPH_B0039 [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71558865|gb|AAZ38074.1| hypothetical protein PSPPH_B0039 [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 796

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 13/77 (16%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVE-TVIAGGGKSFFQITDNGF 61
          L  +II  I    AG        AI EL+ NS+DA+++ +   +   G    F  TD+G 
Sbjct: 7  LDPEIIQHIIHSQAG----SIGKAIIELVMNSVDADATALRLIMTKEG----FHCTDDGC 58

Query: 62 GM-TSEEIPMAVQRHCT 77
          G  + E++     R  T
Sbjct: 59 GFASREDVLRYFGRFGT 75


>gi|282880626|ref|ZP_06289332.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281305521|gb|EFA97575.1| DNA gyrase, B subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 657

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A   + +E  I         + DNG G+  ++    
Sbjct: 47 ETVDNSIDEAMAGYCTDIEVTINED--ESITVQDNGRGIPVDQHEKL 91


>gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 598

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   +A  + V  +I   G      + D+G G+  E++P   +R  
Sbjct: 485 DRIEQVLTNLIDNAIRHTEAGGT-VRLIIERSGDGVTIHVQDSGSGIPEEDLPFVFERFY 543


>gi|154173892|ref|YP_001407307.1| DNA gyrase subunit B [Campylobacter curvus 525.92]
 gi|112803527|gb|EAU00871.1| DNA gyrase, B subunit [Campylobacter curvus 525.92]
          Length = 770

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP---------MAVQRH 75
           E+++NS+D   A     ++  I   G     +TDNG G+  +  P         +    H
Sbjct: 42  EVVDNSIDEAMAGYCDTIDIEITNEG--SCIVTDNGRGIPVDMHPTEHLPAATVVLTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K   D   + + G  G  +  + A+S   +++     N   Q    G  ++++  + 
Sbjct: 100 AGGKFDKDTYKV-SGGLHGVGVSVVNALSKKLILTIKRDGNVYRQEFQKGIPVTALETIK 158

Query: 136 MNPGTIVEVR 145
               T  +V 
Sbjct: 159 TTNRTGTQVE 168


>gi|323139267|ref|ZP_08074321.1| DNA topoisomerase VI, B subunit [Methylocystis sp. ATCC 49242]
 gi|322395488|gb|EFX98035.1| DNA topoisomerase VI, B subunit [Methylocystis sp. ATCC 49242]
          Length = 543

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 23  PSIAIKELIENSLDA--ESS---RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR-H 75
              A+KE ++N+LDA  E+     +   +     KS   + DNG G+   +I     +  
Sbjct: 30  LVTAVKEAVDNALDACEEAGVLPDITVEVRGRFEKSRIVVEDNGPGIVESQIARIFGKLL 89

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLT------LMSRPPQNNTGAQIAISGEKIS 129
             SK         + G +G  + + G    LT      ++SR   +   +++ +S +  +
Sbjct: 90  YGSKFH---KLAQSRGQQGMGISAAGMYGQLTVGKPLHVISRTEGDALASELYVSIDTAN 146

Query: 130 SVRPVAMNPG 139
           +   +     
Sbjct: 147 NRPDIHRKKR 156


>gi|227536008|ref|ZP_03966057.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244121|gb|EEI94136.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 343

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 54/128 (42%)

Query: 3   IRKLSEKIINQIAAGEI---IE--RPSIAIKELIENSLD--AESSRVETVIAG------- 48
           I  L E  I+++ +G I   IE    S  IKE IEN LD  A+S +++ V          
Sbjct: 171 IHDLDE--ISKLESGRISLNIEKFDLSELIKETIEN-LDDKAKSQKIDIVFKQKYQNVTF 227

Query: 49  -------------------------GGKSFFQ-----------ITDNGFGMTSEEIPMAV 72
                                    GG +  +           +TD+G G+  + +P   
Sbjct: 228 VKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIEEKNLPRVF 287

Query: 73  QRHC-TSK 79
           +R   T K
Sbjct: 288 ERFYRTDK 295


>gi|281421058|ref|ZP_06252057.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
 gi|281404976|gb|EFB35656.1| DNA gyrase, B subunit [Prevotella copri DSM 18205]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E ++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 45 VNETVDNSIDEAMAGYCTDIEVTINED--NSITVEDNGRGIPVD 86


>gi|254784277|ref|YP_003071705.1| DNA gyrase subunit B [Teredinibacter turnerae T7901]
 gi|237686033|gb|ACR13297.1| DNA gyrase, B subunit [Teredinibacter turnerae T7901]
          Length = 808

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 72/252 (28%), Gaps = 36/252 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           EL++NS+D   A   S +  VI         ++DNG G+ +E         E+ M V  H
Sbjct: 45  ELVDNSIDEALAGHCSEILAVIHPD--ESISVSDNGRGIPTEMHEEGVSAAEVIMTVL-H 101

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L  R        +         
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSS-----KLKLTIRRGGKV--WEQVYKHGVPQ 153

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +   V             +           + +     +   +R ++     V       
Sbjct: 154 APLSVIGETELTGTEVHFW----PSAETFNNIEFHFEHLAKRLRELSFLNSGVRIRLLDE 209

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           +S + ++      G     +  +       N V       E    G      +N G    
Sbjct: 210 RSGKEEV--YEYEGGLKAFVEFLNQNKNPINKVMHFTAQREDDGVGVEVALQWNDGFQEN 267

Query: 250 FYVFINGRTVQD 261
            Y + N    +D
Sbjct: 268 IYCYTNNIPQRD 279


>gi|167033013|ref|YP_001668244.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
 gi|166859501|gb|ABY97908.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
          Length = 428

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ +E     GG +  ++ DNG G+ S E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAELEV-CREGGMTVIRVLDNGPGIPSGELDEVLKPFY 380


>gi|86151812|ref|ZP_01070026.1| hypothetical protein CJJ26094_0463 [Campylobacter jejuni subsp.
          jejuni 260.94]
 gi|85841441|gb|EAQ58689.1| hypothetical protein CJJ26094_0463 [Campylobacter jejuni subsp.
          jejuni 260.94]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 10 IINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG------GGKS-FFQITDNGFG 62
           +  I +   I R +  I E I+N++DA+++R++            GK     I DNG G
Sbjct: 9  TVKTIKSDSTIMRLNP-ISEAIKNAIDAKATRIDICFEECEGNSLFGKGISISIKDNGAG 67


>gi|322378945|ref|ZP_08053359.1| DNA gyrase subunit B [Helicobacter suis HS1]
 gi|321148621|gb|EFX43107.1| DNA gyrase subunit B [Helicobacter suis HS1]
          Length = 767

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I      + E+++NS+D   A   + ++  ++  G     + DNG G+  +
Sbjct: 31 INGLHHMVYEVVDNSIDESMAGFCTDIKITLSQYG--SCIVEDNGRGIPVD 79


>gi|224372073|ref|YP_002606445.1| DNA gyrase subunit B [Nautilia profundicola AmH]
 gi|223589802|gb|ACM93538.1| DNA gyrase, B subunit [Nautilia profundicola AmH]
          Length = 758

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 81/213 (38%), Gaps = 23/213 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIPMA----VQRH 75
           E+++NS+D   A  ++ ++  I   G +  +I+DNG G+       E+IP A       H
Sbjct: 40  EVVDNSIDEAMAGYANEIKVKINKDGSA--EISDNGRGIPVDIHPEEKIPAATVVLTVLH 97

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  +    + + G  G  +  + A++   +M+         Q    G+ ++ +  + 
Sbjct: 98  AGGKFDNKTYKV-SGGLHGVGVSVVNALAKKLIMTIKRDGKIWRQEFERGKPVTDLEVIG 156

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   +   +          ++   ++ ++   ++ +A   P ++  F        +
Sbjct: 157 TTNRTGTTI-QFW----PDEEIFETTTFKSEILQKRLKELAYLNPNITIKFENENDGVKE 211

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
           +      G   + +  +  ++ I++ +   +  
Sbjct: 212 VYHY--EGGIKDFVKTLTNKECISDVIYFTDHY 242


>gi|188580471|ref|YP_001923916.1| histidine kinase [Methylobacterium populi BJ001]
 gi|179343969|gb|ACB79381.1| histidine kinase [Methylobacterium populi BJ001]
          Length = 621

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 15  AAGEIIE---RPSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTS 65
           AA  ++    R S  +  L+ N+LDA      +  V      G G+    + DNG G+  
Sbjct: 486 AAQWVVFEPIRLSQVLVNLVGNALDAVKGRPGA-EVAVRAWAGEGRVVLSVEDNGPGLDR 544

Query: 66  EEIPMAVQRHCTSK 79
             +    +   T+K
Sbjct: 545 AALARLFEPFFTTK 558


>gi|269115287|ref|YP_003303050.1| Topoisomerase IV subunit B [Mycoplasma hominis]
 gi|21903715|gb|AAC33841.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322912|emb|CAX37647.1| Topoisomerase IV subunit B [Mycoplasma hominis ATCC 23114]
          Length = 639

 Score = 47.0 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 82/247 (33%), Gaps = 37/247 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+ +N++D   +  ++++   +     S   + DNG G+           + +   + H 
Sbjct: 42  EIFDNAIDEALSGFANKIIVTLKKD--SSVIVEDNGRGIPVNKHESGKSGVELVFTELHA 99

Query: 77  TSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMS-RPPQNNTGAQIAISGEKIS 129
             K  D      + G  G       AL S      + +   R  +    A    +  + +
Sbjct: 100 GGKFGDGAYK-TSGGLHGVGSSVVNALSS-----KVEVTVWRDKKAYFTAFQQDTIIEKT 153

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
                    GT V+         A  +  K  +    +I + +R  +   P ++  F   
Sbjct: 154 HEISPTTKQGTKVQFW-------ADFSIFKKSKYSPEIIKEKLREASFLMPNLTIEFY-N 205

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           ++    + F++ +G   E I+ V       + +          ++    +  +  G +  
Sbjct: 206 ENTDEHVTFKTKDG-IKEYINFVGEGKKFISEIFYASGMCNYGIEIDLAL-VYTDGYSES 263

Query: 250 FYVFING 256
            Y F+N 
Sbjct: 264 IYSFVNN 270


>gi|327405005|ref|YP_004345843.1| ATP-binding region ATPase domain-containing protein [Fluviicola
          taffensis DSM 16823]
 gi|327320513|gb|AEA45005.1| ATP-binding region ATPase domain protein [Fluviicola taffensis
          DSM 16823]
          Length = 812

 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 26 AIKELIENSLDAESSRVETVIAGGG----KSFFQITDNGFGMTSE 66
          A+ EL++NS DA++     +    G         + DNG GMTSE
Sbjct: 27 AVVELVKNSYDADAKNCIIIFENHGDFSKTPCIYLIDNGTGMTSE 71


>gi|326201389|ref|ZP_08191261.1| ATP-binding region ATPase domain protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325988957|gb|EGD49781.1| ATP-binding region ATPase domain protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 188

 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 31 IENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTS 78
          ++NS+ A++++++  I+   +       I+DNG GM S+ +  A     TS
Sbjct: 12 VQNSITAQATKIKIHISIDSQKVYLLLNISDNGAGMDSDILLKAQDPFFTS 62


>gi|83646507|ref|YP_434942.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV)
           subunit B [Hahella chejuensis KCTC 2396]
 gi|83634550|gb|ABC30517.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Hahella chejuensis KCTC 2396]
          Length = 325

 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 21/115 (18%)

Query: 26  AIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEEIPMAVQR---H 75
            I EL+ N +D   A  ++ ++  ++        + D+G G      +     V+R   H
Sbjct: 27  VIYELVANVVDLFLAGRATTLKVDVSE---CEIIVIDDGPGFPFPVEDSAHNLVERYLTH 83

Query: 76  CTSKISDD--FSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
              K + D    +IH  G  G  L ++ AVS  LT+ S    +N   +      K
Sbjct: 84  HHDKPTADDHAPHIHVLGG-GLGLAAVNAVSEKLTIES----SNGAWRWRQVFGK 133


>gi|40019245|emb|CAE92286.1| DNA gyrase subunit B [Streptococcus mitis]
          Length = 83

 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++  I     +   + D+G G+  +
Sbjct: 13 EIVDNSIDEALAGFASHIQVFIEPD--NSITVVDDGRGIPVD 52


>gi|145221416|ref|YP_001132094.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK]
 gi|145213902|gb|ABP43306.1| DNA gyrase subunit B [Mycobacterium gilvum PYR-GCK]
          Length = 675

 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 37/179 (20%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  +++V+  I   GG    Q+TD+G G+            ++ M V  
Sbjct: 48  EVVDNAVDEAMAGFATKVDVRILEDGG---VQVTDDGRGIPVAMHSTGIPTIDVVMTVL- 103

Query: 75  HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
           H   K  +    + + G  G       AL S      L    R   +        S    
Sbjct: 104 HAGGKFEEGAYQV-SGGLHGVGVSVVNALSS-----RLEADVRKDGHEWFQTYDRSVPGT 157

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
                     GT +          A     ++   +   I   ++ MA     ++   +
Sbjct: 158 LRKGDPTDKTGTTIRFW-------ADPEIFETTNYDFETIARRLQEMAFLNKGLTIELT 209


>gi|330897345|gb|EGH28764.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 223

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           ER    +  L+ N++  + +    +++   I+ G +  F + D+G G+  E++P   +R+
Sbjct: 117 ERLFQVLSNLVGNAI--KFTPKLGKIDVSAISNGTEIVFTVRDSGEGIPPEQLPHIFERY 174

Query: 76  CTSK 79
            T K
Sbjct: 175 WTVK 178


>gi|301056283|ref|YP_003794494.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300378452|gb|ADK07356.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|228917434|ref|ZP_04080984.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228842206|gb|EEM87304.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 354


>gi|228929830|ref|ZP_04092845.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829746|gb|EEM75368.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 354


>gi|228936090|ref|ZP_04098896.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823545|gb|EEM69371.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 354


>gi|228948526|ref|ZP_04110806.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229124344|ref|ZP_04253533.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228659097|gb|EEL14748.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228811125|gb|EEM57466.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 354


>gi|256823911|ref|YP_003147871.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547]
 gi|256687304|gb|ACV05106.1| DNA gyrase subunit B [Kytococcus sedentarius DSM 20547]
          Length = 701

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/306 (9%), Positives = 83/306 (27%), Gaps = 42/306 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQR-H 75
           E+++N++D   A  + R+E  I     +  ++ DNG G+ ++         + + + + H
Sbjct: 51  EIVDNAVDEHLAGHADRIEVTILPD--NAIRVVDNGRGIPTDVHAKEGISGVELVLTQLH 108

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQN---NTGAQIAISGE 126
              K   D   + + G  G       AL S        +  R   +    +         
Sbjct: 109 AGGKFGGDSYAV-SGGLHGVGSSVVNALSS-----RFEVEVRQKGHVFRQSFTVGVPDAP 162

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
                       GT +                 +  ++   +    ++       ++   
Sbjct: 163 LSKDEEIAEDVTGTTITYW-------PSAEIFDTTVIDFETLRARFQQTCFLNKGLTIQL 215

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT-FNRG 245
           +  +  R          +    I++ + E      +E  +   +         P      
Sbjct: 216 T-DERPRVTDADDEGLDDVDTDIAEGLEEHEDGTPIEDGQPDADQPATAAATKPRTVTYR 274

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDP-RQVDVNVHPAKS 304
             +    ++  R + +      +              ++   + +        +VH   +
Sbjct: 275 YDDGLLDYV--RHLNNSKKTQPVNDEIIAFETEDSERMLQCEVAMQWTSSYSESVHTYAN 332

Query: 305 YIRFRN 310
            +    
Sbjct: 333 SVNTHE 338


>gi|170742880|ref|YP_001771535.1| histidine kinase [Methylobacterium sp. 4-46]
 gi|168197154|gb|ACA19101.1| histidine kinase [Methylobacterium sp. 4-46]
          Length = 624

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI+N+LDA + R    V    A  G ++  +++DNG G+   E         
Sbjct: 515 RLEQVVVNLIQNALDAVAGRPDPRVSVRCAASGPRAVLEVSDNGPGLPEGEAGRVFDPFF 574

Query: 77  TSK 79
           T+K
Sbjct: 575 TTK 577


>gi|190568313|ref|ZP_03021221.1| putative sensor histidine kinase [Bacillus anthracis
           Tsiankovskii-I]
 gi|190560569|gb|EDV14546.1| putative sensor histidine kinase [Bacillus anthracis
           Tsiankovskii-I]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|196041507|ref|ZP_03108800.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027755|gb|EDX66369.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|218906006|ref|YP_002453840.1| putative sensor histidine kinase [Bacillus cereus AH820]
 gi|218538791|gb|ACK91189.1| putative sensor histidine kinase [Bacillus cereus AH820]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|118479903|ref|YP_897054.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196043923|ref|ZP_03111160.1| putative sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225866769|ref|YP_002752147.1| putative sensor histidine kinase [Bacillus cereus 03BB102]
 gi|118419128|gb|ABK87547.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196025259|gb|EDX63929.1| putative sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225787393|gb|ACO27610.1| putative sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|49478756|ref|YP_038821.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49330312|gb|AAT60958.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|52140726|ref|YP_086103.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51974195|gb|AAU15745.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|38234502|ref|NP_940269.1| putative two somponent system sensor kinase protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200765|emb|CAE50469.1| Putative two somponent system sensor kinase protein
           [Corynebacterium diphtheriae]
          Length = 519

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 19  IIE----RPSIAIKELIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           ++E    R    +  L+ N+L    D  S+RV   +A  G +F  ++ D+G G++ E+  
Sbjct: 397 VVEGDAARLHQVLTNLVANALKHGGD--SARVTIKLADAGSNFAVKVIDDGIGLSEEDAS 454

Query: 70  MAVQRHCTSKISDDFSNIHTFGFRGEALP 98
              +R        D S   + G  G  L 
Sbjct: 455 HIFERFY----RADSSRARSTGGSGLGLA 479


>gi|30264844|ref|NP_847221.1| sensor histidine kinase, putative [Bacillus anthracis str. Ames]
 gi|47530327|ref|YP_021676.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187659|ref|YP_030912.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65322143|ref|ZP_00395102.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869815|ref|ZP_02214473.1| putative sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167633866|ref|ZP_02392189.1| putative sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167638020|ref|ZP_02396298.1| putative sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170685775|ref|ZP_02876998.1| putative sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705538|ref|ZP_02896002.1| putative sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177651281|ref|ZP_02934112.1| putative sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|227817570|ref|YP_002817579.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229603222|ref|YP_002869051.1| putative sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254687583|ref|ZP_05151439.1| putative sensor histidine kinase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725148|ref|ZP_05186931.1| putative sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254736886|ref|ZP_05194592.1| putative sensor histidine kinase [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741921|ref|ZP_05199608.1| putative sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754481|ref|ZP_05206516.1| putative sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254757314|ref|ZP_05209341.1| putative sensor histidine kinase [Bacillus anthracis str. Australia
           94]
 gi|30259519|gb|AAP28707.1| putative sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47505475|gb|AAT34151.1| putative sensor histidine kinase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181586|gb|AAT56962.1| sensor histidine kinase, putative [Bacillus anthracis str. Sterne]
 gi|164714644|gb|EDR20163.1| putative sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167513837|gb|EDR89205.1| putative sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530667|gb|EDR93369.1| putative sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129663|gb|EDS98526.1| putative sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670239|gb|EDT20979.1| putative sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172083107|gb|EDT68169.1| putative sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|227007134|gb|ACP16877.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229267630|gb|ACQ49267.1| putative sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 365


>gi|251777853|ref|ZP_04820773.1| two-component sensor histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082168|gb|EES48058.1| two-component sensor histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 471

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 25  IAIKELIENSLD-AESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCT 77
             I  L++N++  +E + ++  +      +   I DNG G+  E++    +   T
Sbjct: 367 QVILNLLDNAIKYSECTEIDIYMENNEDYAIIYIADNGQGIPKEDLKNVFENFYT 421


>gi|16330312|ref|NP_441040.1| DNA gyrase B subunit [Synechocystis sp. PCC 6803]
 gi|2501296|sp|P77966|GYRB_SYNY3 RecName: Full=DNA gyrase subunit B; Contains: RecName: Full=Ssp
          gyrB intein
 gi|1652801|dbj|BAA17720.1| DNA gyrase B subunit [Synechocystis sp. PCC 6803]
          Length = 1078

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + +E  I   G     + DNG G+ ++
Sbjct: 42 VYEVVDNAIDEALAGYCTHIEIDINADG--SVTVVDNGRGIPTD 83


>gi|307566039|ref|ZP_07628497.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A]
 gi|307345227|gb|EFN90606.1| DNA gyrase, B subunit [Prevotella amnii CRIS 21A-A]
          Length = 656

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A   + +E  I     +   + DNG G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCTDIEVTINAD--NSITVEDNGRGIPVDEHKKL 91


>gi|302385856|ref|YP_003821678.1| signal transduction histidine kinase, LytS [Clostridium
           saccharolyticum WM1]
 gi|302196484|gb|ADL04055.1| signal transduction histidine kinase, LytS [Clostridium
           saccharolyticum WM1]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           L+ENS+    D+    +   I   G      + D+G G+  E + 
Sbjct: 524 LVENSIKHGYDSGELNIMVTIRQAGDRLVISVEDDGRGIRPEVLE 568


>gi|242061528|ref|XP_002452053.1| hypothetical protein SORBIDRAFT_04g017780 [Sorghum bicolor]
 gi|241931884|gb|EES05029.1| hypothetical protein SORBIDRAFT_04g017780 [Sorghum bicolor]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   +      G     + DNG GM  +++   +    +  SK+
Sbjct: 164 ELLDNSLDEVVNGATYVHIDMMESKKDGTRMLLVEDNGGGMNPDKMRHCMSLGYSAKSKV 223

Query: 81  SDDFSNIHTFG 91
            +    I  +G
Sbjct: 224 KN---TIGQYG 231


>gi|269928580|ref|YP_003320901.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787937|gb|ACZ40079.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 22  RPSIAIKELIENSLD-AESSR-VETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    ++ L+ N++  A +   +E   A G  G     + D+G G+  E++P   +R 
Sbjct: 533 RLDQVVRNLLHNAIKYAPARTPIEVRAARGDNGTVIVSVRDHGPGIDEEDLPFVFERF 590


>gi|227364560|ref|ZP_03848621.1| histidine kinase [Lactobacillus reuteri MM2-3]
 gi|325682325|ref|ZP_08161842.1| sensor histidine kinase LytS [Lactobacillus reuteri MM4-1A]
 gi|227070397|gb|EEI08759.1| histidine kinase [Lactobacillus reuteri MM2-3]
 gi|290558721|gb|ADD37854.1| two-component sensor histidine kinase [Lactobacillus reuteri]
 gi|324978164|gb|EGC15114.1| sensor histidine kinase LytS [Lactobacillus reuteri MM4-1A]
          Length = 587

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 30  LIENSLD-A-ESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN+L  A  + +    V+  I   G     Q+ DNG G+  E +P   +   TS
Sbjct: 477 LVENALKHAFGARKDHNNVQITIKQLGARLAIQVADNGEGIAPELLPKLGKEPLTS 532


>gi|254462679|ref|ZP_05076095.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium HTCC2083]
 gi|206679268|gb|EDZ43755.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 600

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      V+ ++A G  +   + DNG G+  E++    +   T+K
Sbjct: 493 LLRNALDA--TKSVKDPQVDVLLAAGETAILTVRDNGQGI--EDLDALFEPFYTTK 544


>gi|194467995|ref|ZP_03073981.1| signal transduction histidine kinase, LytS [Lactobacillus reuteri
           100-23]
 gi|194452848|gb|EDX41746.1| signal transduction histidine kinase, LytS [Lactobacillus reuteri
           100-23]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 30  LIENSLD-A-ESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN+L  A  + +    V+  I   G     Q+ DNG G+  E +P   +   TS
Sbjct: 476 LVENALKHAFGARKDHNNVQITIKQLGARLAIQVADNGEGIAPELLPKLGKEPLTS 531


>gi|108760671|ref|YP_628478.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108464551|gb|ABF89736.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 22  RPSIAIKELIENSLDAESSR-VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+L   +   V  V+   G +    + D G G+++E++P   +R 
Sbjct: 513 RLEQVVTNLLSNALKYGAGHPVRVVVEAEGLTARLTVRDGGIGISAEDLPRIFERF 568


>gi|90415375|ref|ZP_01223309.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207]
 gi|90332698|gb|EAS47868.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2207]
          Length = 804

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 86/253 (33%), Gaps = 39/253 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           E+++NS+D   A   S ++ VI         ++DNG G+ +E         E+ M V  H
Sbjct: 44  EVVDNSIDEALAGHCSEIKIVIHQD--ESITVSDNGRGIPTEMHDEGVSAAEVIMTVL-H 100

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKI 128
              K  D+   + + G  G       AL    +V+  LT+         G          
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNAL----SVALRLTIR------RNGKVHEQHYSHG 149

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
               P+ +   T V   ++ F +P+  +   + +   +++   +R ++     V    + 
Sbjct: 150 EPQGPLTIVGDTDVSGTEVHF-VPSA-DTFSNIKFHFDVLAKRLRELSFLNSGVRIVLAD 207

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            ++ + ++      G     +  +       N V       +        +   N G   
Sbjct: 208 ERNGKEEVYAY--EGGLRAFVEFLNTNKTTVNKVMHFSTQRDDGTSVEVALQW-NDGFQE 264

Query: 249 QFYVFINGRTVQD 261
             + + N    +D
Sbjct: 265 NIHCYTNNIPQRD 277


>gi|148544133|ref|YP_001271503.1| signal transduction histidine kinase, LytS [Lactobacillus reuteri
           DSM 20016]
 gi|184153504|ref|YP_001841845.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|148531167|gb|ABQ83166.1| signal transduction histidine kinase, LytS [Lactobacillus reuteri
           DSM 20016]
 gi|183224848|dbj|BAG25365.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
          Length = 587

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 30  LIENSLD-A-ESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN+L  A  + +    V+  I   G     Q+ DNG G+  E +P   +   TS
Sbjct: 477 LVENALKHAFGARKDHNNVQITIKQLGARLAIQVADNGEGIAPELLPKLGKEPLTS 532


>gi|313665344|ref|YP_004047215.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50]
 gi|312949281|gb|ADR23877.1| DNA topoisomerase IV, B subunit [Mycoplasma leachii PG50]
          Length = 643

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   ++++  +     +   I+DNG G+ 
Sbjct: 43 EIVDNAIDEALAGYCTQIDVTLEKD--NSITISDNGRGIP 80


>gi|288940508|ref|YP_003442748.1| DNA topoisomerase IV subunit B [Allochromatium vinosum DSM 180]
 gi|288895880|gb|ADC61716.1| DNA topoisomerase IV, B subunit [Allochromatium vinosum DSM 180]
          Length = 634

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + R+   +   G    ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGHAKRISVTLHADG--SLEVEDDGRGMPVD 77


>gi|148645279|gb|ABR01163.1| DNA gyrase subunit B [Gordonia lacunae]
          Length = 504

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT----SEEIPMA----VQRH 75
           E+++NS+D   A  +SRV+  + A GG    Q+ D+G G+        +P       Q H
Sbjct: 19  EVVDNSVDEAMAGFASRVDVTLLADGG---VQVVDDGRGIPTGMHRTGVPTVEVVMTQLH 75

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K   D   + + G  G  +  + A+S  + L      +    +   S  K  ++   
Sbjct: 76  AGGKFDSDAYAV-SGGLHGVGISVVNALSTKVELE--IQNDGYNWEQTYSYAKPGALEQG 132

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
           +    T   VR      P    F ++ +     +   ++ MA     ++ T +
Sbjct: 133 SATRKTGTTVRF----WPDPEIFTETTRFNAETVARRLQEMAFLNKGLTITLT 181


>gi|144899573|emb|CAM76437.1| Heat shock protein Hsp90 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 621

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 47/191 (24%)

Query: 19  IIERPSI----AIKELIENSLDA------------------ESSRVETVI-AGGGKSFFQ 55
           ++          ++EL+ N+ DA                      +   I    G     
Sbjct: 19  VVHSLYSNKEIFLRELVSNASDACDKLRYESQTQTHLAEGGGEFCIRIQIDKDAGT--LT 76

Query: 56  ITDNGFGMTSEEI-------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGA 102
           I DNG GM  +++         +      S++S D     +       GF      S   
Sbjct: 77  IADNGIGMNHDDLISNLGTIAKSGTAEFMSRLSGDAKKDTSLIGQFGVGF-----YSAFM 131

Query: 103 VSH-LTLMSRPPQNNTGAQIAIS---GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFL 158
           V+  +T+ +R      G +          I+           ++ +RD            
Sbjct: 132 VADTVTVFTRKAGETQGWRWESDGKGSFTIAEDDSAERGARMVLNLRDDAKEFLEAHRLR 191

Query: 159 KSEQVETNLIT 169
              +  ++ I 
Sbjct: 192 AIIKRYSDHIA 202


>gi|15615315|ref|NP_243618.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|15213978|sp|Q9K997|DCTS_BACHD RecName: Full=Probable C4-dicarboxylate sensor kinase
 gi|10175373|dbj|BAB06471.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 532

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 17/86 (19%)

Query: 30  LIENSLDAESSR------VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LI+NSLDA SS       V   I         ++ DNG G+  E       R  ++K   
Sbjct: 432 LIDNSLDAFSSTQDQNKTVHVFIGEENDFLKIRVRDNGEGIREEVREKMFVRGFSTK--- 488

Query: 83  DFSNIHTFGFRGEALPSI-GAVSHLT 107
                 T G RG  L  I   V  + 
Sbjct: 489 -----STSG-RGIGLFLIQAIVERVE 508


>gi|23978284|dbj|BAC21125.1| DNA gyrase B subunit [Chroococcidiopsis sp. PCC 7431]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  +   G    Q+ D+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHIEIDLNADG--SVQVVDDGRGIPTD 51


>gi|284928768|ref|YP_003421290.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
 gi|284809227|gb|ADB94932.1| DNA gyrase subunit B [cyanobacterium UCYN-A]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TDNG G+ ++
Sbjct: 41 VYEVVDNSIDEALAGHCTHIEVDINIDG--SVTVTDNGRGIPTD 82


>gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
 gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
          Length = 1215

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 30   LIENSLDA--ESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            L++N+++A      +E  +   G     ++ D G G+  +++    +   T+K
Sbjct: 1102 LLKNAIEAMPNGGTIEVTVERDGDHVVIRVRDEGVGIPQDKMKKLGEPFYTTK 1154


>gi|126729384|ref|ZP_01745198.1| two-component sensor histidine kinase [Sagittula stellata E-37]
 gi|126710374|gb|EBA09426.1| two-component sensor histidine kinase [Sagittula stellata E-37]
          Length = 319

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E  ++ + +L+ N+++  ++RV        GK+   + DNG G++            T
Sbjct: 218 EGVAVVLDQLLNNAVEHGATRVTVTATQAAGKTTLDVQDNGSGISEGNAARIFDPFFT 275


>gi|330963716|gb|EGH63976.1| bacteriophytochrome [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 918

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    + +L+ N++  + +    R+    +A G    F+++D+G G+ +
Sbjct: 565 AQGLVIDADPERIFQVLSKLVGNAI--KFTPKGGRINIDAVADGNDVLFRVSDDGIGIPA 622

Query: 66  EEIPMAVQRHCTSK 79
           E +P   QR+ + K
Sbjct: 623 EHLPYIFQRYWSVK 636


>gi|296273415|ref|YP_003656046.1| integral membrane sensor signal transduction histidine kinase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097589|gb|ADG93539.1| integral membrane sensor signal transduction histidine kinase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 438

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDA----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
            +  +  +I N+LDA    E+ ++E  I+         I DNG G+ ++ +    + + T
Sbjct: 335 LAQVLVAIISNALDAIKTIENRKIEIEISSNTADVILSIKDNGKGIKAKLLDKIFEPYFT 394

Query: 78  SK 79
           +K
Sbjct: 395 TK 396


>gi|291545172|emb|CBL18281.1| Molecular chaperone, HSP90 family [Ruminococcus sp. 18P13]
          Length = 632

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 37/151 (24%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                +R    ++  I    ++   ITDNG GMT EE+
Sbjct: 29  LRELISNASDAMDKLYFRSLTDEKVGMNREDFAIDLKIDKDARTL-TITDNGIGMTQEEL 87

Query: 69  PMAVQRHCTS---------KISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQNN 116
              +     S         K+ DD   I  F  GF      S   V+  +T+ S+   ++
Sbjct: 88  EKNLGTIANSGSLKFKNENKLEDDVDIIGQFGVGF-----YSAFMVAKRVTVRSKAYGSD 142

Query: 117 TGAQIAISGEKISSVRPVAMNP-GTIVEVRD 146
              Q    G    ++ P      GT + +  
Sbjct: 143 EAYQWQSEGVDGYTIEPCDKETVGTEIILEI 173


>gi|213585985|ref|ZP_03367811.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 173

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAI 497
               + +     + + +Q LL P  + +   E A + +    L  LGI+ +      + I
Sbjct: 23  RWLRQAQLTPGQSPVCAQPLLIPLRLKVSADEKAALQKAQSLLGELGIEFQS-DAQHVTI 81

Query: 498 REIPAILSKKNIPQLLRDIIDEIIDS 523
           R +P  L ++N+  L+ ++I  +   
Sbjct: 82  RAVPLPLRQQNLQILIPELIGYLAQQ 107


>gi|194365224|ref|YP_002027834.1| DNA topoisomerase IV subunit B [Stenotrophomonas maltophilia
           R551-3]
 gi|194348028|gb|ACF51151.1| DNA topoisomerase IV, B subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  +E  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHARSIEITLFKDG--SVEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|15669217|ref|NP_248022.1| DNA topoisomerase VI subunit B [Methanocaldococcus jannaschii DSM
           2661]
 gi|1591683|gb|AAB99032.1| DNA topoisomerase VI, subunit B (top6B) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 686

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 20  IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
           I   +  I EL+ NSLDA  E+     ++  I   G       + DNG G+  E IP   
Sbjct: 61  IRSLTTIIHELVTNSLDACEEAGILPDIKVEIEKLGADHYKVAVEDNGPGIPLEFIPKVF 120


>gi|312914206|dbj|BAJ38180.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|228988037|ref|ZP_04148138.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771671|gb|EEM20136.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 354


>gi|229141512|ref|ZP_04270046.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|228641912|gb|EEK98209.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 354


>gi|289827109|ref|ZP_06545898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|213855672|ref|ZP_03383912.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|213615568|ref|ZP_03371394.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 497

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|168238136|ref|ZP_02663194.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737821|ref|YP_002116136.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713323|gb|ACF92544.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289017|gb|EDY28388.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|154238|gb|AAA27182.1| topoisomerase IV subunit E [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|16761956|ref|NP_457573.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766481|ref|NP_462096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29143443|ref|NP_806785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415122|ref|YP_152197.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181695|ref|YP_218112.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161616170|ref|YP_001590135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551906|ref|ZP_02345659.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990269|ref|ZP_02571369.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231780|ref|ZP_02656838.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243007|ref|ZP_02667939.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262861|ref|ZP_02684834.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463611|ref|ZP_02697528.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819756|ref|ZP_02831756.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443762|ref|YP_002042448.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450180|ref|YP_002047178.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468478|ref|ZP_03074462.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197250406|ref|YP_002148108.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262850|ref|ZP_03162924.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364051|ref|YP_002143688.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243780|ref|YP_002217161.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388424|ref|ZP_03215036.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928305|ref|ZP_03219505.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354097|ref|YP_002227898.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858440|ref|YP_002245091.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213424345|ref|ZP_03357169.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213579856|ref|ZP_03361682.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213645890|ref|ZP_03375943.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|224584982|ref|YP_002638781.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238909982|ref|ZP_04653819.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|61229760|sp|P0A2I5|PARE_SALTY RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|61229761|sp|P0A2I6|PARE_SALTI RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|25292821|pir||AE0889 topoisomerase IV chain B [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16421737|gb|AAL22055.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504258|emb|CAD03013.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139077|gb|AAO70645.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129379|gb|AAV78885.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62129328|gb|AAX67031.1| DNA topoisomerase IV, subunit B [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|149693021|emb|CAK55545.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693023|emb|CAK55546.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|161365534|gb|ABX69302.1| hypothetical protein SPAB_03972 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402425|gb|ACF62647.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408484|gb|ACF68703.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194454842|gb|EDX43681.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633404|gb|EDX51818.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095528|emb|CAR61093.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214109|gb|ACH51506.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241105|gb|EDY23725.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938296|gb|ACH75629.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605522|gb|EDZ04067.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322627|gb|EDZ07824.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273878|emb|CAR38879.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205323370|gb|EDZ11209.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331076|gb|EDZ17840.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333857|gb|EDZ20621.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337845|gb|EDZ24609.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343316|gb|EDZ30080.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348386|gb|EDZ35017.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710243|emb|CAR34600.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224469510|gb|ACN47340.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261248311|emb|CBG26148.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995372|gb|ACY90257.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159735|emb|CBW19254.1| topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|320087633|emb|CBY97397.1| DNA topoisomerase IV, B subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225861|gb|EFX50915.1| Topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322613584|gb|EFY10525.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621176|gb|EFY18034.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624239|gb|EFY21073.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628023|gb|EFY24812.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633140|gb|EFY29882.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636282|gb|EFY32990.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643535|gb|EFY40096.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647448|gb|EFY43937.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648633|gb|EFY45080.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653685|gb|EFY50011.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657793|gb|EFY54061.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663894|gb|EFY60093.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669093|gb|EFY65244.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672912|gb|EFY69019.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678097|gb|EFY74160.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681273|gb|EFY77306.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687796|gb|EFY83763.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716181|gb|EFZ07752.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131542|gb|ADX18972.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195608|gb|EFZ80785.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199710|gb|EFZ84800.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202541|gb|EFZ87581.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207970|gb|EFZ92916.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212478|gb|EFZ97295.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215040|gb|EFZ99788.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222770|gb|EGA07135.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224148|gb|EGA08441.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230472|gb|EGA14590.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235176|gb|EGA19262.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239216|gb|EGA23266.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244426|gb|EGA28432.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247042|gb|EGA31008.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253476|gb|EGA37305.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256218|gb|EGA39954.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323267298|gb|EGA50782.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269299|gb|EGA52754.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624937|gb|EGE31282.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629215|gb|EGE35558.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332990047|gb|AEF09030.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 630

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|47565206|ref|ZP_00236249.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47557992|gb|EAL16317.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|332225325|ref|XP_003261831.1| PREDICTED: LOW QUALITY PROTEIN: MORC family CW-type zinc finger
          protein 1-like [Nomascus leucogenys]
          Length = 985

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG +   + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFTLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTMKFIG 97


>gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 401

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 25/98 (25%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKIS--D 82
           L EN++DA    +   +  +     +  +  + D G G+ SE +        T+K++  +
Sbjct: 292 LAENAIDAMWGEKVKELTIITRQDDRRIYIDVKDTGCGIASENMSKIFDPFYTTKLANYE 351

Query: 83  DFSN-IHT---FG----------FRGEALPSIGAVSHL 106
           D    + T    G          F+GE    I   S L
Sbjct: 352 DREAGVPTGIGLGLYTCLELLKPFKGE----IAVSSKL 385


>gi|288554611|ref|YP_003426546.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
 gi|288545771|gb|ADC49654.1| DNA gyrase subunit B [Bacillus pseudofirmus OF4]
          Length = 646

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     ++  I     +   + DNG G+ 
Sbjct: 53 EIVDNSIDEAMAGHCDTIQVTIEED--NSITVEDNGRGIP 90


>gi|115956019|ref|XP_001183347.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 1441

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 88/279 (31%), Gaps = 42/279 (15%)

Query: 26  AIKELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPM-AVQRHC 76
           AI ELI+NSL A         +E  +     G KS   + DNG GMT+ E+   A+ R  
Sbjct: 123 AIAELIDNSLSATVNNVGPRNIEIRLYLDETGDKSMVCVLDNGKGMTTRELNNWAIYRL- 181

Query: 77  TSKI--------SDDFSNIHTFG----FRG----EALPSIGAVSHLTLMSRPPQNNTGAQ 120
            SK         ++D     +      F G    +A   IG    + ++S+P  +    +
Sbjct: 182 -SKFNRKQENNSNEDAHVPRSLNSDISFFGVGGKQAAFFIGD--SVRMISKPKYSKDVHE 238

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN--FLKSEQVETNLITDVIRRMAIA 178
           + +S E+                  D++  I              E  ++  +++     
Sbjct: 239 MTVSKEEFERREKNK---------EDIYKGIIHNRQPGEGSDVSPENEILQKLVKEEEGK 289

Query: 179 YPKVSFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                   ++I S+  K      S+       I          N   L+           
Sbjct: 290 ENFTHVVITSINSDHMKFLKEDFSSWSTLLAHIYHYYIHGPQGNQSHLSNSMGRTPSPCK 349

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
               +       Q +   N R ++D      IR+A    
Sbjct: 350 NIDISITMYKKGQQHKQRNLRDIEDDPQSIFIRSAKDTF 388


>gi|115653074|ref|XP_794741.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 1388

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 88/279 (31%), Gaps = 42/279 (15%)

Query: 26  AIKELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPM-AVQRHC 76
           AI ELI+NSL A         +E  +     G KS   + DNG GMT+ E+   A+ R  
Sbjct: 123 AIAELIDNSLSATVNNVGPRNIEIRLYLDETGDKSMVCVLDNGKGMTTRELNNWAIYRL- 181

Query: 77  TSKI--------SDDFSNIHTFG----FRG----EALPSIGAVSHLTLMSRPPQNNTGAQ 120
            SK         ++D     +      F G    +A   IG    + ++S+P  +    +
Sbjct: 182 -SKFNRKQENNSNEDAHVPRSLNSDISFFGVGGKQAAFFIGD--SVRMISKPKYSKDVHE 238

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLN--FLKSEQVETNLITDVIRRMAIA 178
           + +S E+                  D++  I              E  ++  +++     
Sbjct: 239 MTVSKEEFERREKNK---------EDIYKGIIHNRQPGEGSDVSPENEILQKLVKEEEGK 289

Query: 179 YPKVSFTFSTIKSNRYKMNF--QSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                   ++I S+  K      S+       I          N   L+           
Sbjct: 290 ENFTHVVITSINSDHMKFLKEDFSSWSTLLAHIYHYYIHGPQGNQSHLSNSMGRTPSPCK 349

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
               +       Q +   N R ++D      IR+A    
Sbjct: 350 NIDISITMYKKGQQHKQRNLRDIEDDPQSIFIRSAKDTF 388


>gi|206895170|ref|YP_002246548.1| sensory transduction histidine kinase [Coprothermobacter
          proteolyticus DSM 5265]
 gi|206737787|gb|ACI16865.1| sensory transduction histidine kinase [Coprothermobacter
          proteolyticus DSM 5265]
          Length = 197

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 30 LIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTS 78
          L +NS+ A +  +   I    K+     +I D+G GM+   +        TS
Sbjct: 11 LAQNSVVAGAKHITIDITADVKADHLLIRIVDDGKGMSPHLVERVTDPFFTS 62


>gi|251794042|ref|YP_003008773.1| DNA gyrase subunit beta [Paenibacillus sp. JDR-2]
 gi|247541668|gb|ACS98686.1| DNA gyrase, B subunit [Paenibacillus sp. JDR-2]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   ++++  +     +   + DNG G+ 
Sbjct: 43 EVVDNSIDEALAGYCTKIQVRVHED--NSITVIDNGRGIP 80


>gi|159043301|ref|YP_001532095.1| DNA topoisomerase IV subunit B [Dinoroseobacter shibae DFL 12]
 gi|157911061|gb|ABV92494.1| DNA topoisomerase IV, B subunit [Dinoroseobacter shibae DFL 12]
          Length = 654

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+ ++
Sbjct: 51 VAEIIDNSMDEAVAGHATWIEVELHANG--HVSVRDNGRGIPTD 92


>gi|94983847|gb|ABF50628.1| DNA topoisomerase IV subunit B [Spiroplasma chinense]
          Length = 554

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ-RH 75
           E+++NS+D   A   + +   +   G     + DNG G+              +     H
Sbjct: 14  EIVDNSIDEALAGVCTEINVTLEKDG--SVTVKDNGRGVPIGMHKGSNKSTPEIIFSVLH 71

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K   D     + G  G       AL S        + +             +G K+S
Sbjct: 72  AGGKFGGDGYK-TSGGLHGVGSSVVNALSS-----KFKV-TIHRDGLISTIKFNNGGKLS 124

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           S            +V               + +   + I++ ++  A+    +  T    
Sbjct: 125 SPLKQIGTS----KVTGTMVNFLPDETMFSTTKFSFSTISERLKESALLNSGLKITLKDE 180

Query: 190 KSNRYK 195
           +S++Y 
Sbjct: 181 RSDKYV 186


>gi|149203080|ref|ZP_01880051.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035]
 gi|149143626|gb|EDM31662.1| DNA topoisomerase IV subunit B [Roseovarius sp. TM1035]
          Length = 651

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+  +
Sbjct: 47 VAEIIDNSMDEAVAGHATWIEVELHANG--HVSVRDNGRGIPVD 88


>gi|19553805|ref|NP_601807.1| two-component system, sensory transduction histidine kinase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391445|ref|YP_226847.1| two component sensor kinase [Corynebacterium glutamicum ATCC 13032]
 gi|21325378|dbj|BAB99999.1| Two-component system, sensory transduction histidine kinases
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326786|emb|CAF21268.1| probable two component sensor kinase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 485

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQR 74
            R    +  L+ N L     DA    V   I   G++    + DNG GM+ E+     +R
Sbjct: 376 TRLHQVLTNLVANGLNHGGPDA---EVSIEINTDGQNVRILVADNGVGMSEEDAQHIFER 432

Query: 75  HC 76
             
Sbjct: 433 FY 434


>gi|85705733|ref|ZP_01036830.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217]
 gi|85669723|gb|EAQ24587.1| DNA topoisomerase IV subunit B [Roseovarius sp. 217]
          Length = 662

 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+  +
Sbjct: 58 VAEIIDNSMDEAVAGHATWIEVELHANG--HVSVRDNGRGIPVD 99


>gi|315650187|ref|ZP_07903262.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
          saburreum DSM 3986]
 gi|315487544|gb|EFU77852.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
          saburreum DSM 3986]
          Length = 650

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 52 VYEIVDNSVDEALAGFCTEIEVSINED--NSITVKDNGRGIPVD 93


>gi|219852784|ref|YP_002467216.1| DNA topoisomerase VI subunit B [Methanosphaerula palustris E1-9c]
 gi|219547043|gb|ACL17493.1| DNA topoisomerase VI, B subunit [Methanosphaerula palustris
          E1-9c]
          Length = 600

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 27 IKELIENSLDA--ESS---RVETVIAG--GGKSFFQITDNGFGMTSEEIPMAV 72
          IKE ++N+LDA  E+     +   +    G   +  + DNG G+  E++P   
Sbjct: 40 IKEAVDNALDACEEAEVLPDIYIEVKRKTGDLFWIMVEDNGPGIMPEQVPFVF 92


>gi|254465442|ref|ZP_05078853.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
 gi|206686350|gb|EDZ46832.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
          Length = 465

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 30  LIENSL---D--AESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ N++   D  A +  VE  +   G  +   + DNG G+  E      +   T K  D+
Sbjct: 357 LVSNAIKHNDQGAGAGAVEISVEDAGDHYIFSVADNGPGIDPEYHDQIFKMFQTLKSRDE 416

Query: 84  FS 85
             
Sbjct: 417 VE 418


>gi|163867363|ref|YP_001608557.1| two-component sensor kinase BatS [Bartonella tribocorum CIP 105476]
 gi|161017004|emb|CAK00562.1| two-component sensor kinase BatS [Bartonella tribocorum CIP 105476]
          Length = 594

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 22  RPSIAIKELIENS---LDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+EN+   +     ++   +     +    I DNG G+ SE I    +R  T
Sbjct: 478 RLGQVISNLLENARSFIPRNRGKISITMKSHASTLILTIEDNGPGIRSENIERIFERFYT 537

Query: 78  SKISDDFSNIHT-FG 91
            + ++D    ++  G
Sbjct: 538 DRPNEDAFGQNSGLG 552


>gi|157376201|ref|YP_001474801.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           sediminis HAW-EB3]
 gi|157318575|gb|ABV37673.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           sediminis HAW-EB3]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++RVE             +TDNG G+        ++   T+K
Sbjct: 249 LSSAINNLVVNSIEAGATRVELKGRESAHELQIDVTDNGKGLDKAMQKKVMEPFFTTK 306


>gi|145294048|ref|YP_001136869.1| DNA gyrase subunit B [Corynebacterium glutamicum R]
 gi|140843968|dbj|BAF52967.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 35/181 (19%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP--------MAVQRH 75
           E+++NS+D   A  +++VE  +   GG    Q+ D+G G+  +  P        +  Q H
Sbjct: 44  EVVDNSVDEAMAGHATKVEVTLLEDGG---VQVVDDGRGIPVDMHPSGAPTVQVVMTQLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN--NTGAQIAISGEKISSVRP 133
              K   D   + + G  G  +  + A+S     +R   +    G     + EK      
Sbjct: 101 AGGKFDSDSYAV-SGGLHGVGISVVNALS-----TRVEADIKLHGKHWYQNFEKSVPDEL 154

Query: 134 VAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +        GT +                ++ + +   I+  ++ MA     ++ T +  
Sbjct: 155 IEGGNARGTGTTIRFW-------PDAEIFETTEFDFETISRRLQEMAFLNKGLTITLTDN 207

Query: 190 K 190
           +
Sbjct: 208 R 208


>gi|21322770|dbj|BAB97399.1| DNA gyrase (topoisomerase II) B subunit [Corynebacterium glutamicum
           ATCC 13032]
          Length = 711

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 35/181 (19%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP--------MAVQRH 75
           E+++NS+D   A  +++VE  +   GG    Q+ D+G G+  +  P        +  Q H
Sbjct: 71  EVVDNSVDEAMAGHATKVEVTLLEDGG---VQVVDDGRGIPVDMHPSGAPTVQVVMTQLH 127

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN--NTGAQIAISGEKISSVRP 133
              K   D   + + G  G  +  + A+S     +R   +    G     + EK      
Sbjct: 128 AGGKFDSDSYAV-SGGLHGVGISVVNALS-----TRVEADIKLHGKHWYQNFEKSVPDEL 181

Query: 134 VAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +        GT +                ++ + +   I+  ++ MA     ++ T +  
Sbjct: 182 IEGGNARGTGTTIRFW-------PDAEIFETTEFDFETISRRLQEMAFLNKGLTITLTDN 234

Query: 190 K 190
           +
Sbjct: 235 R 235


>gi|19551255|ref|NP_599257.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|62388898|ref|YP_224300.1| DNA gyrase subunit B [Corynebacterium glutamicum ATCC 13032]
 gi|41324231|emb|CAF18571.1| DNA GYRASE SUBUNIT B [Corynebacterium glutamicum ATCC 13032]
          Length = 684

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 35/181 (19%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP--------MAVQRH 75
           E+++NS+D   A  +++VE  +   GG    Q+ D+G G+  +  P        +  Q H
Sbjct: 44  EVVDNSVDEAMAGHATKVEVTLLEDGG---VQVVDDGRGIPVDMHPSGAPTVQVVMTQLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN--NTGAQIAISGEKISSVRP 133
              K   D   + + G  G  +  + A+S     +R   +    G     + EK      
Sbjct: 101 AGGKFDSDSYAV-SGGLHGVGISVVNALS-----TRVEADIKLHGKHWYQNFEKSVPDEL 154

Query: 134 VAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +        GT +                ++ + +   I+  ++ MA     ++ T +  
Sbjct: 155 IEGGNARGTGTTIRFW-------PDAEIFETTEFDFETISRRLQEMAFLNKGLTITLTDN 207

Query: 190 K 190
           +
Sbjct: 208 R 208


>gi|261414676|ref|YP_003248359.1| Heat shock protein Hsp90-like protein [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|261371132|gb|ACX73877.1| Heat shock protein Hsp90-like protein [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|302326581|gb|ADL25782.1| heat shock protein HtpG [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 628

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 19/64 (29%)

Query: 27 IKELIENSLDA-----------------ESS-RVETVIAGGGKSFFQITDNGFGMTSEEI 68
          ++EL+ N+ DA                  +  R++  +   GK    + DNG GM  E++
Sbjct: 31 LRELVSNAADALDKRRFLSLSNSSLLPVGTQLRIDISVNKEGKRLI-VEDNGIGMNKEDL 89

Query: 69 PMAV 72
             +
Sbjct: 90 INCL 93


>gi|78188414|ref|YP_378752.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
 gi|78170613|gb|ABB27709.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
          Length = 595

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 26  AIKELIENSLDA-----ESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHC 76
            I+ L++N+++A        R+        K   +  + DNG G+   ++    +R  
Sbjct: 487 VIRNLVDNAINAVDERNG--RIRISAFAMNKEVVRLEVEDNGVGIAKADLDRIFERFY 542


>gi|55378274|ref|YP_136124.1| light- and oxygen-sensing transcription regulator [Haloarcula
            marismortui ATCC 43049]
 gi|55230999|gb|AAV46418.1| putative light- and oxygen-sensing transcription regulator
            [Haloarcula marismortui ATCC 43049]
          Length = 1295

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 22   RPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV----- 72
            R    + EL+ENSL    D  S RV+  +     S   + D+G G+   E+ +       
Sbjct: 1191 RLHRILGELVENSLEHGGDDPSVRVDVQVDRQTVS-ITVADDGPGIPQHELDVVTGDEPI 1249

Query: 73   --QRHCT 77
               RH T
Sbjct: 1250 TQLRHGT 1256


>gi|85709920|ref|ZP_01040985.1| heat shock protein G-like protein [Erythrobacter sp. NAP1]
 gi|85688630|gb|EAQ28634.1| heat shock protein G-like protein [Erythrobacter sp. NAP1]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 20/104 (19%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
             + E I NS DAE+  V   I     S F I D+G GMT+E+      +   SK  D  
Sbjct: 31  TVLGEAISNSWDAEARNVWITIDKEN-SSFTIKDDGIGMTAEDFQGKFLKVGYSKRKDGT 89

Query: 85  SNIHTFGFRGE------------ALPSIGAVSHLTLMSRPPQNN 116
                    GE            AL S      +++ ++   N+
Sbjct: 90  YKTE-----GERPFIGAKGIGKLALLSCAQ--KVSVFTKTEGND 126


>gi|332859522|ref|XP_515079.3| PREDICTED: MORC family CW-type zinc finger protein 2 [Pan
           troglodytes]
          Length = 1011

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM S +    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIYAERREDLRGGFMLCFL-DDGAGMDSSDAASVIQFGKSAKRTPE 93

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 94  STQIGQYG 101


>gi|88607620|ref|YP_505297.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ]
 gi|88598683|gb|ABD44153.1| DNA gyrase, B subunit [Anaplasma phagocytophilum HZ]
          Length = 793

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A   ++++ VIA  G     +TDNG G+  +
Sbjct: 41 EVIDNAIDEALAGFCNKIDIVIAADG--SISVTDNGRGIPID 80


>gi|297193291|ref|ZP_06910689.1| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151724|gb|EDY62302.2| DNA gyrase subunit B [Streptomyces pristinaespiralis ATCC 25486]
          Length = 688

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEAMAGHADTIDVTILADGG---VRVIDNGRGIP 106


>gi|297203051|ref|ZP_06920448.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
 gi|297148281|gb|EDY56081.2| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
          Length = 508

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 22  RPSIAIKELIENS---LDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC- 76
           R    +  L+ N+     A  +RV   +    G+   ++ DNG G+    +P   +R   
Sbjct: 382 RLHQVVAHLLSNARMHTPAG-TRVTASVESADGRCVIRVRDNGPGIPQALLPTVFERFTR 440

Query: 77  --TSKISDD 83
             TS+   D
Sbjct: 441 ADTSRSRAD 449


>gi|297200945|ref|ZP_06918342.1| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
 gi|297147775|gb|EDY60918.2| DNA gyrase, B subunit [Streptomyces sviceus ATCC 29083]
          Length = 690

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 71  VQEVVDNSVDEALAGHADTIDVTILADGG---VRVIDNGRGIP 110


>gi|326778153|ref|ZP_08237418.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658486|gb|EGE43332.1| DNA gyrase, B subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 689

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEAMAGHADTIDVTILADGG---VRVIDNGRGIP 106


>gi|229187038|ref|ZP_04314188.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228596427|gb|EEK54097.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
          Length = 308

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 216 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 267


>gi|300775992|ref|ZP_07085851.1| two component system sensor histidine kinase [Chryseobacterium
          gleum ATCC 35910]
 gi|300505125|gb|EFK36264.1| two component system sensor histidine kinase [Chryseobacterium
          gleum ATCC 35910]
          Length = 883

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 13/57 (22%)

Query: 26 AIKELIENSLDAESSRVETVIAGG-------------GKSFFQITDNGFGMTSEEIP 69
          AI EL++NS DA++ +V+                     S   I D+G GM   +I 
Sbjct: 29 AILELVKNSFDADAKKVKVTFKNLKENDDLSVEQFSKNTSRIIIEDDGVGMNFTDIQ 85


>gi|182437498|ref|YP_001825217.1| DNA gyrase subunit B [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|178466014|dbj|BAG20534.1| putative DNA gyrase subunit B [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 59 VQEVVDNSVDEAMAGHADTIDVTILADGG---VRVIDNGRGIP 98


>gi|163790923|ref|ZP_02185346.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
 gi|159873765|gb|EDP67846.1| DNA gyrase, B subunit [Carnobacterium sp. AT7]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     + DNG G+  +
Sbjct: 51 EIVDNSIDEALAGFADEINLSIEKDG--SIIVMDNGRGIPVD 90


>gi|167040764|ref|YP_001663749.1| histidine kinase [Thermoanaerobacter sp. X514]
 gi|256750974|ref|ZP_05491857.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914802|ref|ZP_07132118.1| histidine kinase [Thermoanaerobacter sp. X561]
 gi|307723964|ref|YP_003903715.1| histidine kinase [Thermoanaerobacter sp. X513]
 gi|166855004|gb|ABY93413.1| histidine kinase [Thermoanaerobacter sp. X514]
 gi|256750084|gb|EEU63105.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889737|gb|EFK84883.1| histidine kinase [Thermoanaerobacter sp. X561]
 gi|307581025|gb|ADN54424.1| histidine kinase [Thermoanaerobacter sp. X513]
          Length = 181

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIA-GGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  +   I     K   ++   D+G GM+ E +        T
Sbjct: 11 LSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMSEELLKKVTDPFIT 61


>gi|293376413|ref|ZP_06622647.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
 gi|325839309|ref|ZP_08166775.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
 gi|292644969|gb|EFF63045.1| DNA gyrase, B subunit [Turicibacter sanguinis PC909]
 gi|325490591|gb|EGC92906.1| DNA gyrase, B subunit [Turicibacter sp. HGF1]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   + DNG G+  +
Sbjct: 46 EIVDNSIDEALAGYCTEINVAITEN--NEIIVKDNGRGIPVD 85


>gi|19909595|dbj|BAB86993.1| DNA gyrase subunit B [Halomonas aquamarina]
          Length = 458

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S +  VI         ++DNG G+ +E
Sbjct: 9  ELVDNSIDEALAGHCSEIRVVIHAD--ESVTVSDNGRGIPTE 48


>gi|238796970|ref|ZP_04640474.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969]
 gi|238719230|gb|EEQ11042.1| DNA topoisomerase 4 subunit B [Yersinia mollaretii ATCC 43969]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERI 209
                 + +             E +
Sbjct: 204 KDLVNNTEQRWCYADGLTDYLMEAV 228


>gi|238782858|ref|ZP_04626887.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970]
 gi|238716281|gb|EEQ08264.1| DNA topoisomerase 4 subunit B [Yersinia bercovieri ATCC 43970]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERI 209
                 + +             E +
Sbjct: 204 KDLVNNTEQRWCYADGLTDYLMEAV 228


>gi|282878061|ref|ZP_06286866.1| histidine kinase [Prevotella buccalis ATCC 35310]
 gi|281299801|gb|EFA92165.1| histidine kinase [Prevotella buccalis ATCC 35310]
          Length = 390

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 26  AIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA        R+   +    GK   +++D G G+  ++I    +   T+K
Sbjct: 291 VIENLCKNAVDAMGGEHG--RITIRVQDAVGKVVVEVSDTGKGIRKKDIRNVFRPGFTTK 348


>gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 22  RPSIAIKELIENSLDAESS------RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           R    +  L+EN++           R++      G      + DNG G+  +++P   +R
Sbjct: 475 RLDQVLINLLENAI----KYSGQGGRIQVEAAEEGEMVRVSVRDNGIGIPEKDLPRLFER 530

Query: 75  HC 76
             
Sbjct: 531 FY 532


>gi|225575706|ref|ZP_03784316.1| hypothetical protein RUMHYD_03799 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037086|gb|EEG47332.1| hypothetical protein RUMHYD_03799 [Blautia hydrogenotrophica DSM
           10507]
          Length = 382

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 12/91 (13%)

Query: 14  IAAGEIIERPSIAIKELIENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIP 69
           IA GE I R    I  +I NS+   D +   ++  +   G     +I DNG G+ ++++ 
Sbjct: 263 IADGEQIRR---VIHNIISNSIKYMDKKKGIIQIRVKDVGDFIQIEIEDNGKGIAAKDLT 319

Query: 70  MAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
               R        D S   + G  G  L SI
Sbjct: 320 NIFDRFY----RTDVSRNSSKGGSGIGL-SI 345


>gi|161897998|gb|ABX80108.1| DNA gyrase subunit B [Streptomyces azureus]
          Length = 482

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+  +
Sbjct: 16 VQEVVDNSVDEALAGYADTIDVTILADGG---VRVVDNGRGIPVD 57


>gi|21228521|ref|NP_634443.1| DNA gyrase subunit B [Methanosarcina mazei Go1]
 gi|20907008|gb|AAM32115.1| DNA gyrase, subunit B [Methanosarcina mazei Go1]
          Length = 634

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S ++  I   G     + DNG G+  +
Sbjct: 41 VYEVVDNSIDEALAGFCSEIDVTINPNG--SVTVIDNGRGIPID 82


>gi|323137236|ref|ZP_08072315.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242]
 gi|322397594|gb|EFY00117.1| DNA gyrase, B subunit [Methylocystis sp. ATCC 49242]
          Length = 810

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV   +   G     +TDNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGHATRVTVTLNADG--SCSVTDNGRGIPTD 89


>gi|291525160|emb|CBK90747.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 476

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 30  LIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++ + SS+V+    +         ++DNG G+  E+I    +   
Sbjct: 373 LIDNAVKSGSSKVDVSGRLISHSIYRIAVSDNGRGIPPEDIERITEAFY 421


>gi|163746415|ref|ZP_02153773.1| C4-dicarboxylate transport sensor protein dctB [Oceanibulbus
           indolifex HEL-45]
 gi|161380300|gb|EDQ04711.1| C4-dicarboxylate transport sensor protein dctB [Oceanibulbus
           indolifex HEL-45]
          Length = 575

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      V+ +++ G  +   + DNG G+  E++    +   T+K
Sbjct: 471 LLRNALDA--TKSERNPQVDIILSAGETATLTVRDNGPGI--EDLDALFEPFYTTK 522


>gi|85373891|ref|YP_457953.1| sensory transduction histidine kinase [Erythrobacter litoralis
           HTCC2594]
 gi|84786974|gb|ABC63156.1| sensory transduction histidine kinase [Erythrobacter litoralis
           HTCC2594]
          Length = 701

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 21  ERPSIAIKELIENSLDAESSR----VETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRH 75
           E    A+  L++N++DA  S     V   ++  G     +I D+G GM  E       RH
Sbjct: 583 ECLEQAVVHLVQNAIDA--SDPGMPVSVDVSSDGLHGKIEIVDSGCGMDPE-----FVRH 635


>gi|152966260|ref|YP_001362044.1| histidine kinase [Kineococcus radiotolerans SRS30216]
 gi|151360777|gb|ABS03780.1| histidine kinase [Kineococcus radiotolerans SRS30216]
          Length = 542

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 30  LIENSLDAES------SRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA +       RV   +      GG    ++ DNG G+  E +P   +   T+K
Sbjct: 427 LLDNALDALAETPEREGRVIVRVGPDTLEGGV-VVEVIDNGPGIDPEVLPRIFEPFVTTK 485


>gi|113477398|ref|YP_723459.1| DNA gyrase subunit B [Trichodesmium erythraeum IMS101]
 gi|110168446|gb|ABG52986.1| DNA gyrase subunit B [Trichodesmium erythraeum IMS101]
          Length = 891

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  +   G    ++TD+G G+  +
Sbjct: 40 VYEVVDNSIDEALAGYCTHIEVDLNKDG--SVKVTDDGRGIPVD 81


>gi|325275335|ref|ZP_08141286.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51]
 gi|324099526|gb|EGB97421.1| DNA gyrase subunit B [Pseudomonas sp. TJI-51]
          Length = 806

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDITVIIHPD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   V
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLVLTVRRSG--KIWEQTYVHGVPQAPMAV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T                  K+     +++   IR ++     V       +S + 
Sbjct: 159 VGDSETT----GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N    +         G      +N         F 
Sbjct: 215 E--FFKYEGGLRAFVEYLNTNKTPVNNQVFHFNVQREDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|269124283|ref|YP_003297653.1| DNA gyrase subunit B [Thermomonospora curvata DSM 43183]
 gi|268309241|gb|ACY95615.1| DNA gyrase, B subunit [Thermomonospora curvata DSM 43183]
          Length = 649

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +  +E  + A GG    ++ DNG G+  +E P
Sbjct: 37 VYEIVDNSVDEALAGYADTIEVTLLADGG---VRVADNGRGIPVDEHP 81


>gi|237809291|ref|YP_002893731.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Tolumonas auensis DSM 9187]
 gi|237501552|gb|ACQ94145.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Tolumonas auensis DSM 9187]
          Length = 536

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 30  LIENSLDA-----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+EN++DA     + + +   +    G  F  + DNG G+  E IP   +R  ++K
Sbjct: 434 LLENAIDALEGVPDPT-ITVALDYEEGSLFCVVKDNGKGIPPEVIPHIFERGFSTK 488


>gi|152994030|ref|YP_001359751.1| hypothetical protein SUN_2460 [Sulfurovum sp. NBC37-1]
 gi|151425891|dbj|BAF73394.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 537

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 14/68 (20%)

Query: 28  KELIE-------NSLDA---ESS---RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQ 73
           KELI+       N++D    +S+   ++E  +    GK+   I DNG G+  +EI    +
Sbjct: 424 KELIQVILIILNNAMDNFKIKSTSDPKIEISVESHQGKALLSIRDNGGGIEEKEIDRIFE 483

Query: 74  RHCTSKIS 81
            + T+K  
Sbjct: 484 PYYTTKFK 491


>gi|23978214|dbj|BAC21106.1| DNA gyrase B subunit [Oscillatoria agardhii]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + +E      G     +TD+G G+  +
Sbjct: 10 VYEVVDNAIDEALAGYCTHIEIDFNANG--SVTVTDDGRGIPVD 51


>gi|319761821|ref|YP_004125758.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           BC]
 gi|330826319|ref|YP_004389622.1| DNA topoisomerase [Alicycliphilus denitrificans K601]
 gi|317116382|gb|ADU98870.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           BC]
 gi|329311691|gb|AEB86106.1| DNA topoisomerase (ATP-hydrolyzing) [Alicycliphilus denitrificans
           K601]
          Length = 658

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 31/216 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           + P   ++E+++N+ D   A    +++  +   G     + D+G G+      EE    +
Sbjct: 36  DNPLHIVQEVLDNAADEALAGYGKKIKVTLHEDG--SVSVEDDGRGIPFGLHPEEGAPVV 93

Query: 69  PMAVQR-HCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQN----NTGAQ 120
            +   R H   K        ++F  G  G  +    A+S  L + +            A 
Sbjct: 94  ELVFTRLHAGGKFDKGQGGAYSFSGGLHGVGVSVTNALSTRLEVSTHREGQIARLAFAAG 153

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                     +       GT V V            + +S Q+    +T ++R  A+  P
Sbjct: 154 DVAEPLLARPLAAGERRQGTTVRVW-------PDAKYFESAQLPMGELTHLLRSKAVLMP 206

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            VS +    K+   +       G   + ++Q +  D
Sbjct: 207 GVSVSLVNEKTRDQQ--AWQYKGGLADYLAQSLPAD 240


>gi|297160224|gb|ADI09936.1| putative two-component sensor [Streptomyces bingchenggensis BCW-1]
          Length = 573

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 19  IIE--RPSIAIKELIENSLDAESSR------VETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           +++       +  LI+N+LDA +S+      +E  +   G  +  +++DNG G+  E   
Sbjct: 412 VVDPRDLVTVLGNLIDNALDAVASQPRPDPFIEVELRAEGTTAVLRVSDNGPGVPPEMRE 471

Query: 70  MAVQRHCTSK 79
                  ++K
Sbjct: 472 QIFAEGWSTK 481


>gi|290968148|ref|ZP_06559693.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290781823|gb|EFD94406.1| DNA gyrase, B subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 79/249 (31%), Gaps = 33/249 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A   + +E  I     +   ++DNG G+    +    +         
Sbjct: 43  VYEVVDNSVDEALAGFCTHIEVTIEAD--NSITVSDNGRGIPVA-MHKVGKPAVEVVLTV 99

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K   D   I + G  G     I  V+ L++ +         +       IS  R 
Sbjct: 100 LHAGGKFGGDGYPI-SGGLHGVG---ISVVNALSIQT-----EVKVKRDNYLWDISFARG 150

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV------IRRMAIAYPKVSFTFS 187
           +     T     +        ++F    ++  +++ D       +R +A     +  T +
Sbjct: 151 ITEKKLTKTRALEPGEETGTTVHFKPDPEIFPDVVYDFDTLKTRLRELAFLNKGLHITLT 210

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA 247
             + +  +  +    G     +  +       +   +     +  +        +N G +
Sbjct: 211 DNREHNKQEVYCYEGG-LISFVQFLNENKQAVHPTVIPLDGEKNQVMVDIA-MQYNDGYS 268

Query: 248 NQFYVFING 256
                F+N 
Sbjct: 269 ENILTFVND 277


>gi|283853813|ref|ZP_06371035.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
 gi|283570800|gb|EFC18838.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
          Length = 251

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 20 IERPSIA-----IKELIENSLDAESSRVETVI--AGGG-----KSFFQITDNGFGMTSEE 67
          + R         + E + NSL A ++ +   I    G          +++DNG G   E 
Sbjct: 9  VHRLHGVNVLDTVVEAVANSLHAGATNISIAIGYQDGTDSKKYIRSIEVSDNGAGFHIEN 68


>gi|217962265|ref|YP_002340835.1| putative sensor histidine kinase [Bacillus cereus AH187]
 gi|222098247|ref|YP_002532304.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|217062924|gb|ACJ77174.1| putative sensor histidine kinase [Bacillus cereus AH187]
 gi|221242305|gb|ACM15015.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 406

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|157368358|ref|YP_001476347.1| hypothetical protein Spro_0109 [Serratia proteamaculans 568]
 gi|157320122|gb|ABV39219.1| conserved hypothetical protein [Serratia proteamaculans 568]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 63/499 (12%), Positives = 154/499 (30%), Gaps = 58/499 (11%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITD 58
           KI    + I N++ A     +P  A+ E I N  DA++S+V         G  +   I+D
Sbjct: 10  KIEVNDKGIRNRLKA----IKPFNAMSEYIWNGFDAKASQVCIDYKVDVLGSVTEITISD 65

Query: 59  NGFGMTSEEIPMAVQRHCTS-KISDDFSNIHTF--GFRGEALPSIGAVSHLTLMSRPPQN 115
           +G G+   E+    +   +S K  D  +++ +   G  G        +  LT   +  + 
Sbjct: 66  DGSGINCTELNRKFKPFLSSEKRIDSENSLMSLVHGKNG--------LGRLTFF-KFARK 116

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVE--TNLITDV-- 171
                      +  S      +        D F       + +KS         + D+  
Sbjct: 117 AIWYTTYKEKNEYYSSEITVSDES-----LDNFSNTDIIKSKVKSCGTSVGFYNVFDISG 171

Query: 172 IRRMAIAYP----KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEK 227
               +   P    + S+     K+  + ++    +  +   I       F    +E   +
Sbjct: 172 FYMESTLEPFLEREFSWFLYLTKNKNFSLSMNGKDILYNNLIKDSDTIKFNFEGIEFTIE 231

Query: 228 SNEITLQ--GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
               + +         F   +++  Y        +      ++    +            
Sbjct: 232 YVRWSCKLNNQASRMYFLTPDSDFKYSITTLLNNKSDSFHHSVYVHSSFF---------- 281

Query: 286 LLLEIDPRQVDVNVHPAKSYIRFRN-PTIIRNFIIQSIQKAINKKGISTSSVLSKKMISS 344
                       +    ++     +  + +   +++ I   +  K        SK+++SS
Sbjct: 282 -------ENFVASKDSNQNDFFSNDTNSEVFKELVKKINSFLRIKRKPFLIEFSKELVSS 334

Query: 345 FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHY 404
           +      K   P+Y  +  N  E +  ++ R +   L   +   +   N P ++      
Sbjct: 335 YEA----KGVFPEY--NHRNRWEIMKAEDLREAVQQLYQIEPKFFKSLNKPQQKILVRML 388

Query: 405 QLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIID 464
              I   ++   + I  +   L   ++    E+L    +     + ++ +    + +   
Sbjct: 389 SFIIDGGEVDSLFDIVDSVISLSSEERDRFSEQLKVTHLSSILKTIELITDRYKSVQEFK 448

Query: 465 LLEGECALIMEHDEDLHRL 483
            L  + ++       L ++
Sbjct: 449 KLVFDPSMYAGEVPHLQKM 467


>gi|85710860|ref|ZP_01041921.1| putative two-component system sensor histidine kinase, putative
          heat shock protein [Idiomarina baltica OS145]
 gi|85695264|gb|EAQ33201.1| putative two-component system sensor histidine kinase, putative
          heat shock protein [Idiomarina baltica OS145]
          Length = 737

 Score = 46.6 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEI 68
          I  P  AI EL++NS DA+S  VE  I        GK    + D G GMT + I
Sbjct: 19 ISGPEAAIIELVKNSYDADSPSVEISIDPPSESDSGK--IIVKDFGHGMTYDNI 70


>gi|326486756|gb|ADZ76421.1| DNA gyrase subunit B [Bacillus subtilis]
          Length = 588

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGYCTDINIQIEKD--NSITVVDNGRGIP 51


>gi|146338768|ref|YP_001203816.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146191574|emb|CAL75579.1| putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 454

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 23  PSIAIKELIENSLDAESSRVE------TVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
               I  L+EN++DA   R+          +  G    F++TDNG G+  + +    +  
Sbjct: 350 LHQVIVNLVENAIDA--MRITEQPRLVVAASRQGNEIAFRVTDNGPGIDKDHLSRIFEPF 407

Query: 76  CTSK 79
            T+K
Sbjct: 408 FTTK 411


>gi|42561045|ref|NP_975496.1| DNA topoisomerase IV subunit B [Mycoplasma mycoides subsp.
          mycoides SC str. PG1]
 gi|42492542|emb|CAE77138.1| DNA TOPOISOMERASE IV SUBUNIT B [Mycoplasma mycoides subsp.
          mycoides SC str. PG1]
 gi|301321176|gb|ADK69819.1| DNA topoisomerase IV, B subunit [Mycoplasma mycoides subsp.
          mycoides SC str. Gladysdale]
          Length = 643

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   ++++ ++     +   I+DNG G+ 
Sbjct: 43 EIVDNAIDEALAGYCTQIDVILEKD--NSITISDNGRGIP 80


>gi|16077074|ref|NP_387887.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307815|ref|ZP_03589662.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312137|ref|ZP_03593942.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. NCIB
          3610]
 gi|221317070|ref|ZP_03598364.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|221321333|ref|ZP_03602627.1| DNA gyrase subunit B [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321313673|ref|YP_004205960.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
 gi|121887|sp|P05652|GYRB_BACSU RecName: Full=DNA gyrase subunit B
 gi|40018|emb|CAA26221.1| unnamed protein product [Bacillus subtilis]
 gi|467396|dbj|BAA05242.1| B subunit of DNA gyrase [Bacillus subtilis]
 gi|2632273|emb|CAB11782.1| DNA gyrase (subunit B) [Bacillus subtilis subsp. subtilis str.
          168]
 gi|291482375|dbj|BAI83450.1| DNA gyrase subunit B [Bacillus subtilis subsp. natto BEST195]
 gi|320019947|gb|ADV94933.1| DNA gyrase subunit B [Bacillus subtilis BSn5]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 44 EIVDNSIDEALAGYCTDINIQIEKD--NSITVVDNGRGIP 81


>gi|306825577|ref|ZP_07458916.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp.
          oral taxon 071 str. 73H25AP]
 gi|304431938|gb|EFM34915.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus sp.
          oral taxon 071 str. 73H25AP]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S ++ +I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFASHIQVLIEPD--NSITVVDDGRGIPVD 88


>gi|269792159|ref|YP_003317063.1| histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099794|gb|ACZ18781.1| histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 185

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVI-AGGGKS--FFQITDNGFGMTSEEIPMAVQRHCT 77
          EN ++A +  VE  + A  G      ++ D+G GM+ E +  AV    T
Sbjct: 14 ENGVNAGARTVELGLHADSGLDVLRIRVRDDGRGMSPEVVSRAVDPFYT 62


>gi|160932418|ref|ZP_02079808.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753]
 gi|156868377|gb|EDO61749.1| hypothetical protein CLOLEP_01253 [Clostridium leptum DSM 753]
          Length = 646

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A    +++  I  G      + DNG G+ 
Sbjct: 47 VYEIVDNAIDEALAGYCDKIDVRILPG--DIIVVEDNGRGIP 86


>gi|317063674|ref|ZP_07928159.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313689350|gb|EFS26185.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 655

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 30  LIENSLDAE-SSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN++DA  + +      +          F  I DNG G++ E +P       T+K
Sbjct: 558 LIENAIDAFLADKEDNLIQISISTTEDSLRFL-IEDNGVGISEEALPYIFDPFYTTK 613


>gi|220918121|ref|YP_002493425.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955975|gb|ACL66359.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 697

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 48/194 (24%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--------------FFQITDNGFGMTSEE 67
           IKE ++NSLDA  E+     +   +   G +                 + DNG G+   +
Sbjct: 127 IKEAVDNSLDACEEAGILPEITIEVRDLGLNEQGEGELTKGEGRFVVVVEDNGPGIVKAQ 186

Query: 68  IPMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLT------LMSRPPQNNTG-- 118
            P    +    SK         + G +G  + +      LT      ++SR  +      
Sbjct: 187 APKIFGKLLYGSKFH---RLKQSRGQQGIGISAAAMYGQLTTGQPIRMISRTGKGKPAFG 243

Query: 119 ------AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                  +                  GT VE+  +            + Q     +   +
Sbjct: 244 LEIQIDTRKNNPVVTAERQLDDWHEHGTRVELEIV-----------ANWQQGQRFVNRYV 292

Query: 173 RRMAIAYPKVSFTF 186
              A++ P  +F +
Sbjct: 293 EHTALSNPHAAFHY 306


>gi|149182285|ref|ZP_01860764.1| DNA gyrase subunit B [Bacillus sp. SG-1]
 gi|148849977|gb|EDL64148.1| DNA gyrase subunit B [Bacillus sp. SG-1]
          Length = 638

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S ++  I     +   + DNG G+ 
Sbjct: 45 EIVDNSIDEALAGYCSEIKVSIEKD--NSITVQDNGRGIP 82


>gi|300865369|ref|ZP_07110180.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
 gi|300336672|emb|CBN55330.1| DNA gyrase subunit B [Oscillatoria sp. PCC 6506]
          Length = 646

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I   G     +TD+G G+ 
Sbjct: 39 VYEVVDNSIDEALAGHCTHIEVDINADG--SVTVTDDGRGIP 78


>gi|282880548|ref|ZP_06289255.1| DNA topoisomerase IV subunit B [Prevotella timonensis CRIS 5C-B1]
 gi|281305651|gb|EFA97704.1| DNA topoisomerase IV subunit B [Prevotella timonensis CRIS 5C-B1]
          Length = 670

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 99/339 (29%), Gaps = 38/339 (11%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A   R+E  I        ++ D G G+   ++  AV    T  K 
Sbjct: 69  LKEVLDNSIDEFKMKAG-DRIEIDIEDN--LRVRVRDYGRGIPQGKLVEAVSVLNTGGKY 125

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
                   + G  G  + ++ A+S H  + S                K       +   G
Sbjct: 126 DSKAFK-KSVGLNGVGIKAVNALSAHFEVESFREGKVRKLTFEKGDMKTDKTTKTSDESG 184

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYK 195
           T +                K+     +++  ++R        ++          ++    
Sbjct: 185 TYIYFE-------PDDTLFKNYSFHDDIVETMLRNYTYLNAGLTIMYNGRRIKSRNGLED 237

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +   +   +    I  +IGED        N+   E                      F  
Sbjct: 238 LLNDNMTTDGLYPIIHMIGEDIEIAFTHTNQYGEEYYS---FVNGQHTTQGGTHQSAFKE 294

Query: 256 G------RTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIRF 308
                        +  + IR      I +    PV     +I        + P    I  
Sbjct: 295 HIAKTIKEFFDKNYEYTDIRNGIVGAIAINVEEPVFESQTKIKLG--STQMAPGGETIN- 351

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
                + +FI + +   ++      + +L  K+ SS H+
Sbjct: 352 ---KYVGDFIKREVDNYLHIHKEDCADILEAKIKSSEHE 387


>gi|258646055|ref|ZP_05733524.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
 gi|260403425|gb|EEW96972.1| DNA gyrase, B subunit [Dialister invisus DSM 15470]
          Length = 649

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  +   G     ITDNG G+ 
Sbjct: 55 VYEVVDNSIDEALAGFCTHIEVTLNDDG--SCTITDNGRGIP 94


>gi|167772592|ref|ZP_02444645.1| hypothetical protein ANACOL_03971 [Anaerotruncus colihominis DSM
          17241]
 gi|167665070|gb|EDS09200.1| hypothetical protein ANACOL_03971 [Anaerotruncus colihominis DSM
          17241]
          Length = 183

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          +NS+ A +  +E ++    +S      + D+G GMT E+         T
Sbjct: 13 QNSVRAGARLIEIMVDEQPESDIMTITVADDGCGMTPEQAAHVTDPFFT 61


>gi|291461019|ref|ZP_06026484.2| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379423|gb|EFE86941.1| DNA gyrase, B subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 639

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 79/206 (38%), Gaps = 29/206 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   ++++  I        ++ DNG G+ ++          EI + V  
Sbjct: 43  EIVDNSVDEALAGYCNKIDVKILPDNI--IEVVDNGRGIPTDIHPKYGKSALEIVLTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  +D   + + G  G  +  + A+S  L +  R   N    +      +      
Sbjct: 100 HAGGKFENDNYKV-SGGLHGVGVSVVNALSEWLEVEVRKEGNVYYQKYYRGKPEEDVKII 158

Query: 134 VAM---NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
            +      GT V  +       A  +  ++       +++ ++ +A     ++ T S ++
Sbjct: 159 GSCEESEHGTTVRFK-------ADRDIFETLIYNYFTLSNRLKELAYLNRGLTITLSDLR 211

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED 216
               K      +G   + +++++ E+
Sbjct: 212 KEEKKEETYKFDGGILDFLNEIVKEE 237


>gi|238750922|ref|ZP_04612419.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380]
 gi|238710836|gb|EEQ03057.1| DNA topoisomerase 4 subunit B [Yersinia rohdei ATCC 43380]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKSYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIIF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERI 209
                 + +             E +
Sbjct: 204 KDKVNNTEQRWCYADGLTDYLMEAV 228


>gi|170780469|ref|YP_001708801.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169155037|emb|CAQ00133.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 664

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  +S ++  +   GG    ++ D+G G+  +
Sbjct: 56 VSEIVDNSVDEALAGFASDIQITMRKDGG---IRVVDDGRGIPVD 97


>gi|154492139|ref|ZP_02031765.1| hypothetical protein PARMER_01771 [Parabacteroides merdae ATCC
          43184]
 gi|154087364|gb|EDN86409.1| hypothetical protein PARMER_01771 [Parabacteroides merdae ATCC
          43184]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 33 NSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          NS+ A +S +   +     +   +ITDNG GM +E          T
Sbjct: 14 NSIRANASEIGLSVEEQDTRIVIRITDNGSGMDAETARRVTNPFYT 59


>gi|148271184|ref|YP_001220745.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829114|emb|CAN00011.1| DNA gyrase subunit B [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  +S ++  +   GG    ++ D+G G+  +
Sbjct: 73  VSEIVDNSVDEALAGFASDIQITMRKDGG---IRVVDDGRGIPVD 114


>gi|313681084|ref|YP_004058823.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313153799|gb|ADR37650.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 419

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 15  AAGEII---ERPSIAIKELIENSLDAESSR---VETVI-AGGGKSFFQITDNGFGMTSEE 67
           AA E++   +R    ++ L+ N++ A + R   V   +    G+++ ++ D+G G+  E 
Sbjct: 305 AAPEVLGDPDRLIQLLRNLVANAVRA-AGRPEGVRVTVGEDDGRAWVEVADDGPGIDPEV 363

Query: 68  IPMAVQRHC 76
           +P   +R  
Sbjct: 364 LPHLFERFA 372


>gi|300857422|ref|YP_003782405.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41]
 gi|300684876|gb|ADK27798.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis FRC41]
 gi|302205162|gb|ADL09504.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis C231]
 gi|302329720|gb|ADL19914.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis 1002]
 gi|308275403|gb|ADO25302.1| DNA gyrase subunit B [Corynebacterium pseudotuberculosis I19]
          Length = 681

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 39/204 (19%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR--------- 74
           E+++NS+D   A  ++ V+  +   GG    ++ DNG G+   ++  +            
Sbjct: 44  EVVDNSVDEAMAGHATHVDVTLLEDGG---VEVVDNGRGIPV-DMHASGAPTVQVVMTQL 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQN--NTGAQIAISGEKISSVR 132
           H   K   D   + + G  G  +  + A+S     +R   +    G     +        
Sbjct: 100 HAGGKFDSDSYAV-SGGLHGVGISVVNALS-----TRVEADIKLHGKHWYQNFSNAVPDE 153

Query: 133 PVAM----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--VSFTF 186
            V        GT +                ++   + ++I   ++ MA       +S T 
Sbjct: 154 LVQGGNARGTGTTIRFW-------PDAEIFETTTFKFDIIARRLQEMAFLNKGLTLSLTD 206

Query: 187 STIKSNRYKMNFQSTNGNFPERIS 210
             +     ++   +  G+  E +S
Sbjct: 207 KRVSDEELELEAIADEGDTAENVS 230


>gi|284990756|ref|YP_003409310.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Geodermatophilus obscurus DSM 43160]
 gi|284064001|gb|ADB74939.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Geodermatophilus obscurus DSM 43160]
          Length = 542

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 32/87 (36%)

Query: 18  EIIERPSIAIKE--------------LIENSLDAE-----------SSRVETVIAGGGKS 52
           E+   P+ A+ E              L++N++DA            ++ V      GG+ 
Sbjct: 411 EV--DPATAVGETGIPGGDLVTIVGNLLDNAIDAALAGEPPREVQFAAEV-----DGGRL 463

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
             ++ D G G+  E++P   +R  ++K
Sbjct: 464 QIRVEDTGPGVREEDLPRLFERGWSTK 490


>gi|253991001|ref|YP_003042357.1| DNA topoisomerase IV subunit B [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782451|emb|CAQ85615.1| topoisomerase IV subunit B [Photorhabdus asymbiotica]
          Length = 631

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 29/212 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  +E ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLAQEVIDNSVDEALAGHAKHIEVILHSD--QSLEVIDDGRGMPVDIHPEEGVSAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  ELILSRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRIEVTVRRSSQVYQIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            ++++ +      N GT V             +F  S +   + +T +++  A+  P V 
Sbjct: 148 VQELAVIGSCGKRNTGTSVHFW-------PDESFFDSPRFSASRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQVI 213
             F      + +               ++ ++
Sbjct: 201 IVFKDKINDTEQKWCYADGLTDYLMAAVNGLM 232


>gi|190571487|ref|YP_001975845.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|213018889|ref|ZP_03334697.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
 gi|190357759|emb|CAQ55211.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|212995840|gb|EEB56480.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Culex
          quinquefasciatus JHB]
          Length = 790

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   S++E  I   G     +TDNG G+ ++
Sbjct: 40 VYEVVDNAIDESLAGYCSKIEVSINEDG--SVSVTDNGRGIPTD 81


>gi|29828972|ref|NP_823606.1| two-component system sensor kinase [Streptomyces avermitilis
           MA-4680]
 gi|29606077|dbj|BAC70141.1| putative two-component system sensor kinase [Streptomyces
           avermitilis MA-4680]
          Length = 575

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
               +  L++N+LDA +     RVE  +   G++   ++ D G G+  E   +      T
Sbjct: 427 LVTVVGNLVDNALDAVAGTPHARVEVELRAEGRTTVLRVRDTGPGIPVERRELIFTDGWT 486

Query: 78  SK 79
           +K
Sbjct: 487 TK 488


>gi|260771893|ref|ZP_05880811.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260613185|gb|EEX38386.1| topoisomerase IV subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 643

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIP-- 69
            RP+   +E+I+NS+D   A  +++V+ ++        ++ D+G GM       E +   
Sbjct: 46  TRPNHLGQEVIDNSVDEALAGYATKVQVILHAD--QSLEVIDDGRGMPVDIHPEENVSGV 103

Query: 70  --MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
             +  + H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 104 ELILCKLHAGGKFSNKSYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYDIAFEHGEK 162

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--K 181
              ++        N GT V         P    +  S     + + + +R  A+  P  +
Sbjct: 163 VSDLTVTGTCGRRNRGTSVHF------WPEAR-YFDSANFSVSRLVNNLRAKAVLCPGLE 215

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           ++FT     +    +          E +
Sbjct: 216 ITFTDKVNNNEYRWLYEDGLKDYLAEGV 243


>gi|194339113|gb|ACF49472.1| GyrB [Amycolatopsis taiwanensis]
          Length = 448

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          I+E+++NS+D   A  +++VE  + A GG    ++ D+G G+  EE P
Sbjct: 3  IQEVVDNSVDEAMAGFATKVEVTLLADGG---VRVVDDGRGIPVEEHP 47


>gi|119773418|ref|YP_926158.1| hypothetical protein Sama_0277 [Shewanella amazonensis SB2B]
 gi|119765918|gb|ABL98488.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 483

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 24 SIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMA 71
          + A+ ++I+NS+ A++SRV+        KS  +I DNG GM ++ +  A
Sbjct: 13 ASALADIIDNSIAAKASRVDLNFTWQNEKSRIEILDNGSGMDAQGLDTA 61


>gi|118591525|ref|ZP_01548922.1| probable two-component sensor histidine kinase protein [Stappia
           aggregata IAM 12614]
 gi|118435853|gb|EAV42497.1| probable two-component sensor histidine kinase protein [Stappia
           aggregata IAM 12614]
          Length = 598

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 22  RPSIAIKELIENSLDA---ESSRV---ETVIA---GGGKSFFQITDNGFGMTSEEIPMAV 72
           R    +  L+ N+LDA    +  +   E  +     GG++   ++DNG G+ +E +P   
Sbjct: 481 RLEQVVINLLSNALDAVSGNALSLAGPEVRLELRQEGGEAVLTVSDNGPGIDAEVLPQIF 540

Query: 73  QRHCTSK 79
               T+K
Sbjct: 541 DPFFTTK 547


>gi|17232757|ref|NP_489305.1| DNA gyrase subunit B [Nostoc sp. PCC 7120]
 gi|17134404|dbj|BAB76964.1| DNA gyrase B subunit [Nostoc sp. PCC 7120]
          Length = 645

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+  +
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVEINADG--SVAVTDDGRGIPID 80


>gi|222823049|ref|YP_002574622.1| DNA gyrase, subunit B [Campylobacter lari RM2100]
 gi|222538270|gb|ACM63371.1| DNA gyrase, subunit B [Campylobacter lari RM2100]
          Length = 772

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 21/175 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIP----MAVQRH 75
           E+++NS+D   A     +   I   G     ++DNG G+      +E +P    +    H
Sbjct: 43  EVVDNSIDEAMAGFCDTINVEITTEG--SCIVSDNGRGIPVGMHPTENMPTLTVVLTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K   D   + + G  G  +  + A+S   + +         +   S  K++S     
Sbjct: 101 AGGKFDKDTYKV-SGGLHGVGVSVVNALSKKLVATVHRDGEI-YRQEFSEGKVTSDFETI 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                   + + +          +    +  ++    R +A   PK++  F   +
Sbjct: 159 GTSKKTGTIIEFW----PDDQIFEITNFDYEILAKRFRELAYLNPKITINFKDNR 209


>gi|229158393|ref|ZP_04286456.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228625071|gb|EEK81835.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
          Length = 395

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVNVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 354


>gi|226311028|ref|YP_002770922.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093976|dbj|BAH42418.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 471

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++  +  G  +  +I DNG GM  +E+     R+ 
Sbjct: 391 IKVSVEKGKHTLIRIEDNGKGMKEQELDRIFDRYY 425


>gi|153005351|ref|YP_001379676.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028924|gb|ABS26692.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 626

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 30  LIENSLDAESS---RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +    RVE   A  GG+   +++D+G G+  E +P       T+K
Sbjct: 529 LLLNAVDA-ARPGGRVEVSTATAGGRIAVRVSDDGAGIAPEHLPRIFDPFFTTK 581


>gi|148979399|ref|ZP_01815505.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3]
 gi|145961835|gb|EDK27128.1| DNA topoisomerase IV subunit B [Vibrionales bacterium SWAT-3]
          Length = 626

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 79/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
           ERP+   +E+I+NS+D   A  + +++ V+        ++TD+G GM  +         +
Sbjct: 30  ERPNHLAQEVIDNSVDEALAGHAKKIKVVLHAD--QSLEVTDDGRGMPVDIHPEKGISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S++     + G  G  +  + A+S  + +  R          +   +
Sbjct: 88  ELILTKLHSGGKFSNNNYK-FSGGLHGVGISVVNALSKRVEVTVRREGQVHEIALEHGKA 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
             +++        N GT V              +  S +  T  + + +R  A+  P + 
Sbjct: 147 VTELTVTGTCGHRNSGTSVHFW-------PDPKYFDSSKFSTLRLINNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TFS       + +         + +++
Sbjct: 200 ITFS--DKVNNEEHKWFYEDGLKDYLAE 225


>gi|332797100|ref|YP_004458600.1| DNA topoisomerase VI subunit B [Acidianus hospitalis W1]
 gi|332694835|gb|AEE94302.1| DNA topoisomerase VI, B subunit [Acidianus hospitalis W1]
          Length = 527

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 23 PSIAIKELIENSLDAESS-------RVETVIA----GGGKSFFQITDNGFGMTSEEIPMA 71
             A++E++ENSLDA  +        ++ ++             + DNG G+    +P A
Sbjct: 30 LYQALREMVENSLDA--TDVHEILPSIKIIMDLIDQDKQIYKLTVEDNGIGIPPHVVPDA 87

Query: 72 VQR-HCTSK 79
            R   +SK
Sbjct: 88 FGRVLYSSK 96


>gi|326929998|ref|XP_003211140.1| PREDICTED: MORC family CW-type zinc finger protein 2-like
           [Meleagris gallopavo]
          Length = 1043

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++          GG     + D+G GM S E    +Q   ++K S +
Sbjct: 51  ELVDNARDADATRIDIYTEHRENLRGGFMLCFL-DDGAGMDSNEAASVIQFGKSAKRSPE 109

Query: 84  FSNIHTFG 91
            + I  +G
Sbjct: 110 STQIGQYG 117


>gi|294635768|ref|ZP_06714228.1| conserved hypothetical protein [Edwardsiella tarda ATCC 23685]
 gi|291090868|gb|EFE23429.1| conserved hypothetical protein [Edwardsiella tarda ATCC 23685]
          Length = 993

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E I     AI EL +N+ DA + +V   I  G      I D+G GM   E  
Sbjct: 23 EQIADCPTAISELWKNAYDAYARQVSLHIFDGDMKISAIVDDGHGMNRNEFE 74


>gi|117619870|ref|YP_854549.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561277|gb|ABK38225.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 665

 Score = 46.6 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 30  LIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS+       D +  ++   +   G+      +DNG G+  E +P       TSK
Sbjct: 563 LILNSINHGFDNWD-KPKKITIKVEQQGEELLIDYSDNGRGIPPEILPRIFDPFVTSK 619


>gi|257469430|ref|ZP_05633522.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 667

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 30  LIENSLDAE-SSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN++DA  + +      +          F  I DNG G++ E +P       T+K
Sbjct: 570 LIENAIDAFLADKEDNLIQISISTTEDSLRFL-IEDNGVGISEEALPYIFDPFYTTK 625


>gi|222618645|gb|EEE54777.1| hypothetical protein OsJ_02172 [Oryza sativa Japonica Group]
          Length = 682

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 26  AIKELIENSLD---AESSRVET-VIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           AI EL++N++D     ++ V          G S   I D+G GM  E +   +    + K
Sbjct: 159 AIAELLDNAIDEVNTGATFVRVNEFTNPRDGSSSLLIQDDGGGMDPEALRRCMSFGFSDK 218

Query: 80  ISDDFSNIHTFGFR 93
            SD     +  GF+
Sbjct: 219 QSDALIGQYGNGFK 232


>gi|218188430|gb|EEC70857.1| hypothetical protein OsI_02368 [Oryza sativa Indica Group]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 26  AIKELIENSLD---AESSRVET-VIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           AI EL++N++D     ++ V          G S   I D+G GM  E +   +    + K
Sbjct: 159 AIAELLDNAIDEVNTGATFVRVNEFTNPRDGSSSLLIQDDGGGMDPEALRRCMSFGFSDK 218

Query: 80  ISDDFSNIHTFGFR 93
            SD     +  GF+
Sbjct: 219 QSDALIGQYGNGFK 232


>gi|152985037|ref|YP_001346288.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           aeruginosa PA7]
 gi|150960195|gb|ABR82220.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           aeruginosa PA7]
          Length = 763

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 30  LIENSLDA------ES-SRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A       + SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGAPSRVVIGSRVEPGGLLCLWVRDEGPGVPADQLEHIFTPFHTSK 711


>gi|29840266|ref|NP_829372.1| DNA gyrase subunit B [Chlamydophila caviae GPIC]
 gi|29834614|gb|AAP05250.1| DNA gyrase, subunit B [Chlamydophila caviae GPIC]
          Length = 806

 Score = 46.6 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          I      + E+++NS+D   A   S +   I   GG     I+DNG G+ 
Sbjct: 35 ITGLHHLVYEVVDNSIDEAMAGYCSEIYVRILEDGG---ITISDNGRGIP 81


>gi|326390355|ref|ZP_08211914.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993632|gb|EGD52065.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus JW
           200]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 41  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 98

Query: 75  -HCTSKISDDFSNIH 88
            H   K ++D   + 
Sbjct: 99  LHAGGKFNNDAYKVS 113


>gi|310781287|gb|ADP24119.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781289|gb|ADP24120.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781285|gb|ADP24118.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781283|gb|ADP24117.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 402

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 9  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 66

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 67 LHAGGKFNNDAYKVS 81


>gi|310781281|gb|ADP24116.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781277|gb|ADP24114.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781279|gb|ADP24115.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781267|gb|ADP24109.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781273|gb|ADP24112.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781275|gb|ADP24113.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781265|gb|ADP24108.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781269|gb|ADP24110.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781271|gb|ADP24111.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781263|gb|ADP24107.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 7  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 64

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 65 LHAGGKFNNDAYKVS 79


>gi|310781251|gb|ADP24101.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781249|gb|ADP24100.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781253|gb|ADP24102.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781255|gb|ADP24103.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781257|gb|ADP24104.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781245|gb|ADP24098.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781247|gb|ADP24099.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781239|gb|ADP24095.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781241|gb|ADP24096.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781243|gb|ADP24097.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781259|gb|ADP24105.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781261|gb|ADP24106.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781237|gb|ADP24094.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781235|gb|ADP24093.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 452

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781225|gb|ADP24088.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781229|gb|ADP24090.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781231|gb|ADP24091.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781233|gb|ADP24092.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781211|gb|ADP24081.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781203|gb|ADP24077.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781201|gb|ADP24076.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781205|gb|ADP24078.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781207|gb|ADP24079.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781215|gb|ADP24083.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781217|gb|ADP24084.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781219|gb|ADP24085.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781221|gb|ADP24086.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781223|gb|ADP24087.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781199|gb|ADP24075.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781193|gb|ADP24072.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781195|gb|ADP24073.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781197|gb|ADP24074.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781191|gb|ADP24071.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781209|gb|ADP24080.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781213|gb|ADP24082.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781189|gb|ADP24070.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781183|gb|ADP24067.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781179|gb|ADP24065.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781181|gb|ADP24066.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781185|gb|ADP24068.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781187|gb|ADP24069.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781177|gb|ADP24064.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781175|gb|ADP24063.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 445

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781173|gb|ADP24062.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781169|gb|ADP24060.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 8  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 65

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 66 LHAGGKFNNDAYKVS 80


>gi|310781167|gb|ADP24059.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 444

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781131|gb|ADP24041.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781129|gb|ADP24040.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781085|gb|ADP24018.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781087|gb|ADP24019.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781171|gb|ADP24061.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 445

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781081|gb|ADP24016.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 446

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 7  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 64

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 65 LHAGGKFNNDAYKVS 79


>gi|310781051|gb|ADP24001.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781053|gb|ADP24002.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310781043|gb|ADP23997.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 7  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 64

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 65 LHAGGKFNNDAYKVS 79


>gi|310781037|gb|ADP23994.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781035|gb|ADP23993.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781039|gb|ADP23995.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781041|gb|ADP23996.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781031|gb|ADP23991.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781045|gb|ADP23998.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781047|gb|ADP23999.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781049|gb|ADP24000.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781055|gb|ADP24003.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781057|gb|ADP24004.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781059|gb|ADP24005.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781061|gb|ADP24006.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781063|gb|ADP24007.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781065|gb|ADP24008.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781069|gb|ADP24010.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781071|gb|ADP24011.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781073|gb|ADP24012.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781075|gb|ADP24013.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781029|gb|ADP23990.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 4  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 61

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 62 LHAGGKFNNDAYKVS 76


>gi|310781011|gb|ADP23981.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781013|gb|ADP23982.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781015|gb|ADP23983.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781017|gb|ADP23984.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781023|gb|ADP23987.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310781009|gb|ADP23980.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 402

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 9  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 66

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 67 LHAGGKFNNDAYKVS 81


>gi|310781005|gb|ADP23978.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310780999|gb|ADP23975.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 400

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 9  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 66

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 67 LHAGGKFNNDAYKVS 81


>gi|310780997|gb|ADP23974.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 9  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 66

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 67 LHAGGKFNNDAYKVS 81


>gi|310780945|gb|ADP23948.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 375

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780937|gb|ADP23944.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 453

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 6  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 63

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 64 LHAGGKFNNDAYKVS 78


>gi|310780929|gb|ADP23940.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780931|gb|ADP23941.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780933|gb|ADP23942.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780935|gb|ADP23943.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780969|gb|ADP23960.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780971|gb|ADP23961.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780973|gb|ADP23962.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780975|gb|ADP23963.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780977|gb|ADP23964.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780979|gb|ADP23965.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780981|gb|ADP23966.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780983|gb|ADP23967.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780985|gb|ADP23968.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780987|gb|ADP23969.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780989|gb|ADP23970.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780991|gb|ADP23971.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780993|gb|ADP23972.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780995|gb|ADP23973.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781019|gb|ADP23985.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781021|gb|ADP23986.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781025|gb|ADP23988.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781027|gb|ADP23989.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781077|gb|ADP24014.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781079|gb|ADP24015.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781089|gb|ADP24020.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781091|gb|ADP24021.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781093|gb|ADP24022.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781095|gb|ADP24023.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781097|gb|ADP24024.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781099|gb|ADP24025.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781101|gb|ADP24026.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781103|gb|ADP24027.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781105|gb|ADP24028.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781107|gb|ADP24029.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781109|gb|ADP24030.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781111|gb|ADP24031.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781113|gb|ADP24032.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781115|gb|ADP24033.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781117|gb|ADP24034.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781119|gb|ADP24035.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781121|gb|ADP24036.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781123|gb|ADP24037.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781125|gb|ADP24038.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781127|gb|ADP24039.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781145|gb|ADP24048.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781147|gb|ADP24049.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781149|gb|ADP24050.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781151|gb|ADP24051.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781153|gb|ADP24052.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781155|gb|ADP24053.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781159|gb|ADP24055.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781161|gb|ADP24056.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781163|gb|ADP24057.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781165|gb|ADP24058.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780927|gb|ADP23939.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780967|gb|ADP23959.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781007|gb|ADP23979.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780909|gb|ADP23930.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780911|gb|ADP23931.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780913|gb|ADP23932.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780915|gb|ADP23933.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780917|gb|ADP23934.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780919|gb|ADP23935.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780921|gb|ADP23936.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780923|gb|ADP23937.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780925|gb|ADP23938.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780949|gb|ADP23950.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780951|gb|ADP23951.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780953|gb|ADP23952.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780955|gb|ADP23953.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780957|gb|ADP23954.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780959|gb|ADP23955.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780961|gb|ADP23956.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780963|gb|ADP23957.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780965|gb|ADP23958.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781001|gb|ADP23976.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781003|gb|ADP23977.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780907|gb|ADP23929.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781083|gb|ADP24017.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781143|gb|ADP24047.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780905|gb|ADP23928.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 376

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780901|gb|ADP23926.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780903|gb|ADP23927.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780939|gb|ADP23945.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780941|gb|ADP23946.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780943|gb|ADP23947.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310780947|gb|ADP23949.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781067|gb|ADP24009.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781135|gb|ADP24043.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781137|gb|ADP24044.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781139|gb|ADP24045.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781141|gb|ADP24046.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
 gi|310781157|gb|ADP24054.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780899|gb|ADP23925.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|310780897|gb|ADP23924.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|307265429|ref|ZP_07546985.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919543|gb|EFN49761.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 41  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 98

Query: 75  -HCTSKISDDFSNIH 88
            H   K ++D   + 
Sbjct: 99  LHAGGKFNNDAYKVS 113


>gi|290792686|gb|ADD63785.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|290792694|gb|ADD63789.1| DNA gyrase subunit B [Borrelia hermsii]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 34/249 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR 74
           + E+++NS+D   A    ++E +I     +   + DNG G+      EE    + + + +
Sbjct: 37  VYEVVDNSIDEALAGFCDKIEVIINSD--NSVTVNDNGRGIPTDVHEEEGISALELVLTK 94

Query: 75  -HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            H   K +     + + G  G       AL S  AV    ++SR  +             
Sbjct: 95  LHSGGKFNKGTYKV-SGGLHGVGISVVNALSSFLAV----IVSRDGKLFKQTYSRGIPTS 149

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
              +  V+   GT V          A     ++ + +   ++  +R +A    K+  +  
Sbjct: 150 EVDIIGVSSARGTKVT-------FLADSEIFETLEYDFETLSKRLRELAFLNDKIRISIE 202

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA 247
             +S + K+      G     +  +              + +   +    G+     G +
Sbjct: 203 DRRSGKEKLLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSVGLKW-TEGYS 261

Query: 248 NQFYVFING 256
           +    F+N 
Sbjct: 262 DHILSFVNN 270


>gi|262173021|ref|ZP_06040698.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
 gi|261890379|gb|EEY36366.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
          Length = 684

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 21  ERPSIAIKELIENSLDA-ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+LDA   +      +  V         ++ DNG G+  E +    + 
Sbjct: 577 QRLRQVLGNLVSNALDAMGKTPEPKLSISAVSEEHQV-IVRVNDNGCGIAPELLTTMFEP 635

Query: 75  HCTSK 79
             TSK
Sbjct: 636 FQTSK 640


>gi|297543507|ref|YP_003675809.1| DNA gyrase subunit B [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296841282|gb|ADH59798.1| DNA gyrase, B subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 41  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 98

Query: 75  -HCTSKISDDFSNIH 88
            H   K ++D   + 
Sbjct: 99  LHAGGKFNNDAYKVS 113


>gi|289577274|ref|YP_003475901.1| DNA gyrase subunit beta [Thermoanaerobacter italicus Ab9]
 gi|289526987|gb|ADD01339.1| DNA gyrase, B subunit [Thermoanaerobacter italicus Ab9]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 41  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 98

Query: 75  -HCTSKISDDFSNIH 88
            H   K ++D   + 
Sbjct: 99  LHAGGKFNNDAYKVS 113


>gi|229093888|ref|ZP_04224981.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228689493|gb|EEL43305.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
          Length = 334

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  E+IP   +   T+K
Sbjct: 242 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKEKIPKLNEAFYTTK 293


>gi|256376041|ref|YP_003099701.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920344|gb|ACU35855.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 566

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
             ++EL+ N++  + +S +   I    +    + DNG GM  
Sbjct: 485 AVVRELVSNAVRHSGASELTVTIEADRQLTISVVDNGIGMPE 526


>gi|226312404|ref|YP_002772298.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226095352|dbj|BAH43794.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 606

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESSRVETVIA----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++NSLDA +S     I        +   + TDNG G++ E +P   +   T+K
Sbjct: 511 LLKNSLDAITSNGTISIETTCLPNNQVRIRFTDNGCGISQELLPRLGEPFYTTK 564


>gi|167585339|ref|ZP_02377727.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ubonensis Bu]
          Length = 199

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 16/70 (22%)

Query: 39  SSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL 97
           + R++  I     +   Q+ DNG G+  + +P   +   T+K           G RG  L
Sbjct: 100 APRIDVTIEASAATLAIQVRDNGPGIAPDLLPRLFEPFFTTK---------EMG-RGLGL 149

Query: 98  -----PSIGA 102
                 SI +
Sbjct: 150 GLAISSSIAS 159


>gi|124486001|ref|YP_001030617.1| histidine kinase [Methanocorpusculum labreanum Z]
 gi|124363542|gb|ABN07350.1| histidine kinase [Methanocorpusculum labreanum Z]
          Length = 719

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          +   +IAI EL++NS DA +  V        G ++ +I D+G GMT +
Sbjct: 24 VTNDNIAITELVKNSYDAFAYNVVVEFGEDEGGAYIKIIDDGLGMTRQ 71


>gi|167038684|ref|YP_001661669.1| DNA gyrase subunit B [Thermoanaerobacter sp. X514]
 gi|300913756|ref|ZP_07131073.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561]
 gi|307723227|ref|YP_003902978.1| DNA gyrase subunit B [Thermoanaerobacter sp. X513]
 gi|166852924|gb|ABY91333.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter sp. X514]
 gi|300890441|gb|EFK85586.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X561]
 gi|307580288|gb|ADN53687.1| DNA gyrase, B subunit [Thermoanaerobacter sp. X513]
          Length = 633

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 41  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTM 98

Query: 75  -HCTSKISDDFSNIH 88
            H   K ++D   + 
Sbjct: 99  LHAGGKFNNDAYKVS 113


>gi|91772465|ref|YP_565157.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
 gi|91711480|gb|ABE51407.1| DNA gyrase subunit B [Methanococcoides burtonii DSM 6242]
          Length = 632

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A     ++  I   G     + D+G G+  +  P 
Sbjct: 39 VYEVVDNSIDEALAGFCKNIDVSINADG--SVTVVDDGRGIPVDNHPK 84


>gi|115522035|ref|YP_778946.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53]
 gi|115515982|gb|ABJ03966.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisA53]
          Length = 813

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE V+   G     + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATRVEVVLNADG--SVTVRDDGRGIPVD 96


>gi|311695553|gb|ADP98426.1| two-component sensor histidine kinase [marine bacterium HP15]
          Length = 539

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA-----ESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
               +  LI+N+LDA      +  RV+  +   G+    ++ D G G+   E     ++ 
Sbjct: 427 LVSVLGNLIDNALDATRLKTGAGGRVQLSMTDLGQELIFEVQDQGPGIPESERQRIFEKG 486

Query: 76  CTSK 79
            +SK
Sbjct: 487 VSSK 490


>gi|158315187|ref|YP_001507695.1| heat shock protein 90 [Frankia sp. EAN1pec]
 gi|158110592|gb|ABW12789.1| heat shock protein Hsp90 [Frankia sp. EAN1pec]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 49/222 (22%)

Query: 27  IKELIENSLDAE-----SS-------------RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA      +S              +   +    ++   + DNG GM+ +++
Sbjct: 33  LRELISNASDALDKLRIASLVDKDLSTDTSDLHIALEVDREQRTL-TVRDNGIGMSRDDV 91

Query: 69  PMAVQRHCTS-------KISDDFSNIHTF--------GFRGEALPSIGAVS-HLTLMSRP 112
              +     S       K  +      +         GF      S   V+  +TL++R 
Sbjct: 92  VQLIGTIARSGTAEMLRKAKESKDAAASLDLIGQFGVGF-----YSTFMVADKVTLLTRR 146

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVEV-------RDLFFTIPARLNFLKSEQVE 164
              + G +    GE    +  V     GT V +        D  F   A     +  +  
Sbjct: 147 AGESGGTRWESGGEGTYVIEDVDDAPQGTAVTLHLKPEDSEDHLFDYTAERKIREIVKRY 206

Query: 165 TNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFP 206
           ++ I   I RMA   P  + +     +    +   ++     
Sbjct: 207 SDFIAWPI-RMATENPDQAASTDEDGTATTDIQTLNSMKALW 247


>gi|106734191|gb|ABF82572.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  ++  + DNG G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NWILVEDNGRGIPVD 44


>gi|331004661|ref|ZP_08328123.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409588|gb|EGG89028.1| DNA gyrase subunit B [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I     +   + DNG G+  +
Sbjct: 39 VYEIVDNSVDEALAGFCTEIKVKINED--NSITVRDNGRGIPVD 80


>gi|324328676|gb|ADY23936.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 406

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIIQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|296274281|ref|YP_003656912.1| PAS/PAC sensor signal transduction histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098455|gb|ADG94405.1| PAS/PAC sensor signal transduction histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 723

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
            +   +         I DNG G+  + +    +   TSK + D   +
Sbjct: 642 SISISLEDD-LLCISIKDNGIGIKDDNLEKIFEPFFTSKKNGDGFGL 687


>gi|294809110|ref|ZP_06767828.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Bacteroides xylanisolvens SD CC 1b]
 gi|294443664|gb|EFG12413.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Bacteroides xylanisolvens SD CC 1b]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|288871182|ref|ZP_06410058.1| putative two-component sensor histidine kinase YesM [Clostridium
           hathewayi DSM 13479]
 gi|288864488|gb|EFC96786.1| putative two-component sensor histidine kinase YesM [Clostridium
           hathewayi DSM 13479]
          Length = 624

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 30  LIENSLDAESSR------VETVI-AGGGKSFFQITDNGFGMTSEEIPMA 71
           L+ENS+     +      +   I   GG+    ++DNG GMT EE+   
Sbjct: 519 LVENSIYHGGEKMLTPCKISVTIREEGGRITITVSDNGPGMTEEELEAV 567


>gi|288800604|ref|ZP_06406062.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332817|gb|EFC71297.1| DNA gyrase, B subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 657

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E ++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 45 VNETVDNSIDEAMAGYCTDIEVTINED--NSITVQDNGRGIPVD 86


>gi|261491595|ref|ZP_05988178.1| tetrathionate reductase regulon sensor histidine kinase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261494955|ref|ZP_05991424.1| tetrathionate reductase regulon sensor histidine kinase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261309364|gb|EEY10598.1| tetrathionate reductase regulon sensor histidine kinase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261312721|gb|EEY13841.1| tetrathionate reductase regulon sensor histidine kinase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 552

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 33  NSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+L A +S +   +     G     I DNG G +  ++        T K
Sbjct: 465 NALQAGASEISVRLQAVENGLE-IAIEDNGGGFSPAQLEFPFVPFRTDK 512


>gi|260172424|ref|ZP_05758836.1| DNA gyrase subunit B [Bacteroides sp. D2]
 gi|315920720|ref|ZP_07916960.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2]
 gi|313694595|gb|EFS31430.1| hypothetical protein BSGG_2130 [Bacteroides sp. D2]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|255010097|ref|ZP_05282223.1| DNA gyrase subunit B [Bacteroides fragilis 3_1_12]
 gi|313147892|ref|ZP_07810085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136659|gb|EFR54019.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|237716665|ref|ZP_04547146.1| subunit B [Bacteroides sp. D1]
 gi|237720397|ref|ZP_04550878.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
 gi|262405441|ref|ZP_06081991.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
 gi|294646223|ref|ZP_06723877.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
 gi|298480563|ref|ZP_06998760.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|229442648|gb|EEO48439.1| subunit B [Bacteroides sp. D1]
 gi|229450148|gb|EEO55939.1| DNA gyrase subunit B [Bacteroides sp. 2_2_4]
 gi|262356316|gb|EEZ05406.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_22]
 gi|292638441|gb|EFF56805.1| DNA gyrase, B subunit [Bacteroides ovatus SD CC 2a]
 gi|295086258|emb|CBK67781.1| DNA gyrase subunit B [Bacteroides xylanisolvens XB1A]
 gi|298273384|gb|EFI14948.1| DNA gyrase, B subunit [Bacteroides sp. D22]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|160883910|ref|ZP_02064913.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
 gi|156110640|gb|EDO12385.1| hypothetical protein BACOVA_01884 [Bacteroides ovatus ATCC 8483]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|254361812|ref|ZP_04977947.1| tetrathionate reductase regulon sensor histidine kinase [Mannheimia
           haemolytica PHL213]
 gi|153093347|gb|EDN74343.1| tetrathionate reductase regulon sensor histidine kinase [Mannheimia
           haemolytica PHL213]
          Length = 552

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 33  NSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+L A +S +   +     G     I DNG G +  ++        T K
Sbjct: 465 NALQAGASEISVRLQAVENGLE-IAIEDNGGGFSPAQLEFPFVPFRTDK 512


>gi|153809174|ref|ZP_01961842.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
 gi|149128150|gb|EDM19370.1| hypothetical protein BACCAC_03484 [Bacteroides caccae ATCC 43185]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|29348838|ref|NP_812341.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568817|ref|ZP_04846227.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387912|ref|ZP_06997461.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
 gi|29340744|gb|AAO78535.1| DNA gyrase subunit B [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840836|gb|EES68917.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259319|gb|EFI02194.1| DNA gyrase, B subunit [Bacteroides sp. 1_1_14]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|53711588|ref|YP_097580.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
 gi|60679839|ref|YP_209983.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
 gi|253564361|ref|ZP_04841818.1| subunit B [Bacteroides sp. 3_2_5]
 gi|265764971|ref|ZP_06093246.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
 gi|52214453|dbj|BAD47046.1| DNA gyrase B subunit [Bacteroides fragilis YCH46]
 gi|60491273|emb|CAH06021.1| DNA gyrase subunit B [Bacteroides fragilis NCTC 9343]
 gi|251948137|gb|EES88419.1| subunit B [Bacteroides sp. 3_2_5]
 gi|263254355|gb|EEZ25789.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_16]
 gi|301161359|emb|CBW20899.1| DNA gyrase subunit B [Bacteroides fragilis 638R]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|6006289|dbj|BAA84773.1| DNA gyrase B subunit [Bacteroides fragilis]
          Length = 653

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|110635898|ref|YP_676106.1| periplasmic sensor signal transduction histidine kinase
           [Mesorhizobium sp. BNC1]
 gi|110286882|gb|ABG64941.1| periplasmic sensor signal transduction histidine kinase
           [Chelativorans sp. BNC1]
          Length = 589

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 15  AAGE--IIE----RPSIAIKELIENSL----DAESSRVETVIAGGGKSFF-QITDNGFGM 63
            AG+  +++    R    +  LIEN+     D    RV   ++   +     + DNG G+
Sbjct: 461 KAGQSFVVQGHDLRLGQVVTNLIENARSFVPDEG-GRVTITLSRSQRRIIITVDDNGPGI 519

Query: 64  TSEEIPMAVQRHCT 77
            ++ I    +R  T
Sbjct: 520 RADNIDRIFERFYT 533


>gi|310781033|gb|ADP23992.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR---------H 75
          E+++NS+D   A     +   I     +   + D+G G+ ++  P   +          H
Sbjct: 2  EVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVGKPAVEVALTMLH 59

Query: 76 CTSKISDDFSNIH 88
             K ++D   + 
Sbjct: 60 AGGKFNNDAYKVS 72


>gi|326775215|ref|ZP_08234480.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Streptomyces cf. griseus XylebKG-1]
 gi|326655548|gb|EGE40394.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Streptomyces cf. griseus XylebKG-1]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
          + EL++N++D   A     +   + G G     +TD+G G+ +++ P A 
Sbjct: 39 VLELVDNAVDEAAAGHCGTISVELHGDG--SCSVTDDGRGIPTDQHPEAG 86


>gi|289625656|ref|ZP_06458610.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648217|ref|ZP_06479560.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868794|gb|EGH03503.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 581

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R++  I     +    + DNG G+  E +        
Sbjct: 473 RLEQVLINLLRNALDAMRECPSRRLDVRIDAIDKQWRLSVKDNGTGIAEENLASIFDPFF 532

Query: 77  TSK 79
           T+K
Sbjct: 533 TTK 535


>gi|255523796|ref|ZP_05390761.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255512499|gb|EET88774.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 141

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 30 LIENSLDAES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          L+ NS+   +  + ++  +    K +  I DNG GM+ EE+    +R+ 
Sbjct: 47 LLYNSVIHNAPDTIIKVSVRQEDKIYITIEDNGKGMSEEEVKKLFERYY 95


>gi|254496578|ref|ZP_05109446.1| sensor kinase HydH [Legionella drancourtii LLAP12]
 gi|254354202|gb|EET12869.1| sensor kinase HydH [Legionella drancourtii LLAP12]
          Length = 333

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    A+  L+ N++ +E++ V   +      G     + DNG GM+ E    A     T
Sbjct: 234 ESLIGAVLNLVINAIQSEATEVYLTLASMDNSGIQ-ILVEDNGKGMSEEVKNHAFSPFYT 292

Query: 78  SK 79
           +K
Sbjct: 293 TK 294


>gi|269120931|ref|YP_003309108.1| histidine kinase [Sebaldella termitidis ATCC 33386]
 gi|268614809|gb|ACZ09177.1| histidine kinase [Sebaldella termitidis ATCC 33386]
          Length = 497

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 20  IER--PSIAIKELIENSLD---AESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           I+R     AI+ LIEN++    A  + +     I   GK+   ++D G G+   E     
Sbjct: 374 IDRSLLKQAIRALIENAIKYSPAN-TTITIDSYIED-GKARISVSDMGIGIDKSEHAKIF 431

Query: 73  QRHC 76
           +R  
Sbjct: 432 ERFY 435


>gi|182434701|ref|YP_001822420.1| putative DNA gyrase B subunit [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178463217|dbj|BAG17737.1| putative DNA gyrase B subunit [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
          + EL++N++D   A     +   + G G     +TD+G G+ +++ P A 
Sbjct: 39 VLELVDNAVDEAAAGHCGTISVELHGDG--SCSVTDDGRGIPTDQHPEAG 86


>gi|71725920|gb|AAZ39078.1| gyrase subunit B [Exiguobacterium aurantiacum]
          Length = 512

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   +  G  +   + D+G G+  +
Sbjct: 20 EIVDNSIDEALAGHCETITVTVEPG--NSIVVEDDGRGIPVD 59


>gi|329851060|ref|ZP_08265817.1| ATPase [Asticcacaulis biprosthecum C19]
 gi|328839906|gb|EGF89478.1| ATPase [Asticcacaulis biprosthecum C19]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 22  RPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
               A+ ++++NS+ A+++ ++    A   +    I DNG GM    +  A  R+  S+ 
Sbjct: 23  SLETAVADVVDNSIAAKATTIDVWCHAEAARPSLAIVDNGDGMDEATLIEA-MRYG-SRN 80

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQI-----AISGEKISSVRP 133
             D       G  G  +   S      LT++SR   +  GA+      A    +IS + P
Sbjct: 81  PRDKRPPTDLGRFGLGMKTASFSQCRKLTVVSRVGDSFAGAEWDLDVLADDHWRISILDP 140

Query: 134 VAMNPGTIV 142
                    
Sbjct: 141 DECRLVPWF 149


>gi|313887747|ref|ZP_07821429.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846356|gb|EFR33735.1| DNA gyrase, B subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I   G    +ITDNG G+  +
Sbjct: 42 VYEIVDNSIDEALAGICDHIIIKINKNG--SVEITDNGSGIPVD 83


>gi|311745397|ref|ZP_07719182.1| heat shock protein HtpG [Algoriphagus sp. PR1]
 gi|126577944|gb|EAZ82164.1| heat shock protein HtpG [Algoriphagus sp. PR1]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 151/547 (27%), Gaps = 86/547 (15%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                   + VE       K    I+D G GMT+EEI 
Sbjct: 30  LRELVSNAVDATQKIKRLATLGQYTGELGDTTVEVSFDE-KKKTITISDKGLGMTAEEIK 88

Query: 70  MAVQRHCTS-------KISD--DFSNI---HTFGFRGEALPSIGAVS-HLTLMSRPPQNN 116
             + +   S       K  D  D + I      GF      S   V+  + + +      
Sbjct: 89  KYINQVAFSGAEEFVEKFKDAKDANEIIGKFGLGF-----YSAFMVADKVEINT------ 137

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                 +S ++ +       +  T  E+ +             S +     +   I + +
Sbjct: 138 ------LSYQEGAEPAKWTCDGSTSFEISE------------GSRKERGTDVILHINKDS 179

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
             +         +      +      G   E +   + +        +  ++   T +  
Sbjct: 180 EEFVDKFKLQGILDKYAKFLPVPIKFGTKTESVEDGVDDKGEKKWKSVEVENFINTTEPI 239

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                 +  + +    +     +                     YP  +  +   P+  +
Sbjct: 240 WTKSPSDLKDEDYLNFYKELYPMS--------EDPLFWIHLNVDYPFNLTGVLYFPKVKN 291

Query: 297 VNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGISTSSVLSKKMISSFHQDNAPKTHL 355
                      F     I + +   + + +    G+  S  +   +  SF Q +     +
Sbjct: 292 EFELQRNKIKLFSRQVFITDEVKDIVPEFLMLLHGVIDSPDIPLNVSRSFLQADGNVKKI 351

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQ 415
             Y T     +     +++R S  +    D   + +     E+      +        + 
Sbjct: 352 NSYITKKVADKLAELFKKDRTSY-EAKWDDIGLFVKYGMISEDKFYEKGKDFALLKNTNG 410

Query: 416 NYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDL--LEGECALI 473
            Y   +     V  +Q   +E+ +                       + +     +   I
Sbjct: 411 EYFTLEEYQAKVKPNQTDKNEQTVILYATDLEKQDSFIQSANKKDYDVLVMDSPIDSHFI 470

Query: 474 MEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRI 533
              +  L +              ++ + A +++K I +   D  D ++    +  +++  
Sbjct: 471 QNLESKLEKT------------QLKRVDADVAEKLIQK--EDTYDNLLTEDQSKEVKEIF 516

Query: 534 ENILATM 540
           E  +   
Sbjct: 517 EKAINNK 523


>gi|106734213|gb|ABF82583.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
 gi|106734219|gb|ABF82586.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG+G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDNGWGIPVD 44


>gi|89054222|ref|YP_509673.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
 gi|88863771|gb|ABD54648.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
          Length = 621

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N+LDA +      +E  + GG      + D G G++ E +  A     T
Sbjct: 502 RLQQVVVNLLGNALDAMAQVDPPTIEITLTGGDAPQIAVRDIGPGLSDEALAHAFDPFFT 561

Query: 78  SK 79
           +K
Sbjct: 562 TK 563


>gi|259415818|ref|ZP_05739738.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
 gi|259347257|gb|EEW59034.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
          Length = 600

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE ++A G  +   + DNG G+  ++     +  
Sbjct: 490 RLEQVMVNLLRNALDA--TKSVEEPEVEIILAAGETATLTVRDNGDGI--QDFDSLFEPF 545

Query: 76  CTSK 79
            T+K
Sbjct: 546 YTTK 549


>gi|260578370|ref|ZP_05846284.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734]
 gi|258603392|gb|EEW16655.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 20  IERPSIAIKELIENSL-----DAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMA 71
           + R    +  L+ N+L     DA     E  +      G     + DNG G+ +E++P  
Sbjct: 373 VNRLHQVLGNLVTNALRHAGEDA-----EVKLRLDKRDGHVIVDVEDNGRGIPAEDVPHL 427

Query: 72  VQRHC 76
            +R  
Sbjct: 428 FERFY 432


>gi|68535407|ref|YP_250112.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
 gi|68263006|emb|CAI36494.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
          Length = 536

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 20  IERPSIAIKELIENSL-----DAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMA 71
           + R    +  L+ N+L     DA     E  +      G     + DNG G+ +E++P  
Sbjct: 426 VNRLHQVLGNLVTNALRHAGEDA-----EVKLRLDKRDGHVIVDVEDNGRGIPAEDVPHL 480

Query: 72  VQRHC 76
            +R  
Sbjct: 481 FERFY 485


>gi|99081303|ref|YP_613457.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
 gi|99037583|gb|ABF64195.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
          Length = 600

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE ++A G  +   + DNG G+  ++     +  
Sbjct: 490 RLEQVMVNLLRNALDA--TKSVEEPEVEIILAAGETATLTVRDNGDGI--QDFDSLFEPF 545

Query: 76  CTSK 79
            T+K
Sbjct: 546 YTTK 549


>gi|313885866|ref|ZP_07819607.1| DNA topoisomerase IV subunit B [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924695|gb|EFR35463.1| DNA topoisomerase IV subunit B [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 673

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 30/227 (13%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--- 78
           IKE+I+NS+D       S  +   I     +  QI D G G+    +   V    TS   
Sbjct: 60  IKEVIDNSIDEFVMGVGS-EIRITI-DSETNEVQIRDYGRGIP---LGKLVD--ATSKMN 112

Query: 79  ---KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              KI        + G  G  L ++ A+S   T+ S      +      +     +    
Sbjct: 113 TGAKIDSQAFK-KSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMVAHTPAAP 171

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
             +     EV     +        ++   +   +  ++R        ++          +
Sbjct: 172 CEDK----EVHGTLVSFTPDAEVFRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKKYVSR 227

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDF--INNAVELNEKSNEITLQG 235
                    +  G+    I ++ G D       +E   +     + G
Sbjct: 228 HGLQDFLSDTITGDPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNG 274


>gi|297191601|ref|ZP_06908999.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197719341|gb|EDY63249.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 575

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 30  LIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L++N+LDA +      +E  +   GG    ++ D+G G+ +E          T+K     
Sbjct: 435 LVDNALDAAAGTPDAQIEVELHTVGGTVILRVADSGPGVPAEHRESIFTEGWTTK----- 489

Query: 85  SNIHTFGFRGEALP 98
             + + G RG  LP
Sbjct: 490 -ELPSHGKRGLGLP 502


>gi|194339099|gb|ACF49465.1| GyrB [Amycolatopsis plumensis]
          Length = 446

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 17/76 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPM---------AV 72
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +  P            
Sbjct: 3  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKENKPTIEVVLT 59

Query: 73 QRHCTSKISDDFSNIH 88
          Q H   K   D   + 
Sbjct: 60 QLHAGGKFDSDSYAVS 75


>gi|194339061|gb|ACF49446.1| GyrB [Amycolatopsis balhimycina]
          Length = 463

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 17/76 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPM---------AV 72
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +  P            
Sbjct: 4  VQEVVDNSVDEAMAGHATKVEVTLLADGG---VRVVDDGRGIPVDMHPKENKPTIEVVLT 60

Query: 73 QRHCTSKISDDFSNIH 88
          Q H   K   D   + 
Sbjct: 61 QLHAGGKFDSDSYAVS 76


>gi|320325517|gb|EFW81579.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320327195|gb|EFW83209.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330880796|gb|EGH14945.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMRECPSRRLEVRIDAIDKQWRLSVKDNGTGIAEENLASIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|313902446|ref|ZP_07835848.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467244|gb|EFR62756.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 521

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 21  ERPSIAIKELIENS-----------LDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
            R +  +  L++N+           LDA       V+  GG    ++ DNG G+   ++P
Sbjct: 369 HRLAQVLGNLVDNAARHAGPEGQVRLDA-------VLVPGGI-RIEVADNGPGIDPADLP 420

Query: 70  MAVQRHC 76
              +   
Sbjct: 421 RIFEPFY 427


>gi|299132907|ref|ZP_07026102.1| histidine kinase [Afipia sp. 1NLS2]
 gi|298593044|gb|EFI53244.1| histidine kinase [Afipia sp. 1NLS2]
          Length = 432

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 17/84 (20%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT- 89
           +E+S  A +++        G     + D+G GM  E +  A  R+ T+K + + +   T 
Sbjct: 235 VEHS--AGATQ--------GFVEIVVADDGMGMPEEVLSQAFTRYFTTKPASNLNRPPTD 284

Query: 90  FGF---RGEA-LPSIGAVSHLTLM 109
            G    RG A L S    SHL + 
Sbjct: 285 CGGTPARGRATLSSQS--SHLRMR 306


>gi|298488635|ref|ZP_07006665.1| C4-dicarboxylate transport sensor protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156976|gb|EFH98066.1| C4-dicarboxylate transport sensor protein [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMRERPSRRLEVRIDAIDKQWRLSVKDNGTGIAEENLASIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|257486467|ref|ZP_05640508.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330987805|gb|EGH85908.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMRECPSRRLEVRIDAIDKQWRLSVKDNGTGIAEENLASIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|226327149|ref|ZP_03802667.1| hypothetical protein PROPEN_01014 [Proteus penneri ATCC 35198]
 gi|225204367|gb|EEG86721.1| hypothetical protein PROPEN_01014 [Proteus penneri ATCC 35198]
          Length = 387

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 72/211 (34%), Gaps = 31/211 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+V+ ++        ++ DNG GM  +          
Sbjct: 31  TRPNHLAQEVIDNSVDEALAGHASKVDVILYAD--QSIEVIDNGRGMPVDIHPELKVSAI 88

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +A   H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 89  ELILAHL-HAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRIEVTVRRDGKIYQIAFENGD 146

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-- 180
             E++  +      + GT V                KS          V++  A+  P  
Sbjct: 147 KVEELHEIGTCAKRDTGTSVHFWPDGAYFDVPRFSSKSLS-------HVLKAKAVLCPGV 199

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            VSF      +               E +++
Sbjct: 200 NVSFVDKVNNTQENWCYADGLTDYLSEAVAE 230


>gi|213023885|ref|ZP_03338332.1| DNA mismatch repair protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 153

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 3/155 (1%)

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
             ++      +   Q+ +      L     T           +      G     +  + 
Sbjct: 2   RQSAGGWPHAQPGYQKQQGEVYRTLLQTPTTSPAPEPVAPALDGHSQSFGRVLTIVGGDC 61

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
            + +    + ++    A   L   ++      + + +Q LL P  + +   E A + +  
Sbjct: 62  ALLEHAGTIQLLSLPVAERWLRQAQL--TPGQSPVCAQPLLIPLRLKVSADEKAALQKAQ 119

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQL 512
             L  LGI+ +      + IR +P  L ++N+  L
Sbjct: 120 SLLGELGIEFQS-DAQHVTIRAVPLPLRQQNLQIL 153


>gi|169840071|ref|ZP_02873259.1| DNA gyrase subunit B [candidate division TM7 single-cell isolate
          TM7a]
          Length = 99

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A    ++   I  G     ++TDNG G+ 
Sbjct: 28 EIVDNSVDEALAGVCDKITVKILEGNI--IEVTDNGRGIP 65


>gi|281356695|ref|ZP_06243186.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316822|gb|EFB00845.1| DNA gyrase, B subunit [Victivallis vadensis ATCC BAA-548]
          Length = 824

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  +S +E  I     +   + D+G G+  +
Sbjct: 49 VYEVVDNSIDEALAGYASHIEVTIHSD--NSISVEDDGRGIPVD 90


>gi|149010561|ref|ZP_01831932.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|147765042|gb|EDK71971.1| DNA gyrase, B subunit [Streptococcus pneumoniae SP19-BS75]
 gi|332077223|gb|EGI87685.1| DNA gyrase, B subunit [Streptococcus pneumoniae GA17545]
          Length = 648

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  SS ++  I         + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFSSHIQVFIEPD--DSITVVDDGRGIPVD 88


>gi|71737124|ref|YP_276132.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71557677|gb|AAZ36888.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMRECPSRRLEVRIDAIDKQWRLSVKDNGTGIAEENLASIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|332300679|ref|YP_004442600.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332177742|gb|AEE13432.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 673

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 68/227 (29%), Gaps = 30/227 (13%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--- 78
           IKE+I+NS+D       S  +   I     +  QI D G G+    +   V    TS   
Sbjct: 60  IKEVIDNSIDEFVMGVGS-EIRITI-DSETNEVQIRDYGRGIP---LGKLVD--ATSKMN 112

Query: 79  ---KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              KI        + G  G  L ++ A+S   T+ S      +      +     +    
Sbjct: 113 TGAKIDSQAFK-KSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMVAHTPAAP 171

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
             + G    V     +        ++   +   +  ++R        ++          +
Sbjct: 172 CEDKG----VHGTLVSFTPDAEVFRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKKYVSR 227

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDF--INNAVELNEKSNEITLQG 235
                    +  G+    I ++ G D       +E   +     + G
Sbjct: 228 HGLQDFLSDTITGDPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNG 274


>gi|188996682|ref|YP_001930933.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931749|gb|ACD66379.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 337

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 23  PSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            SIA+K LIEN++          +     G      + D G G+  E IP+  +R  
Sbjct: 231 LSIALKNLIENAIKYNVQNGTVEVNAKTDGKYDIISVIDTGIGIPPESIPLVFERFY 287


>gi|115381154|gb|ABI96226.1| DNA gyrase subunit B [Mesoplasma corruscae]
          Length = 553

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  + ++   +   G     + DNG G+            + +   + H
Sbjct: 14 EILDNSIDEAMAGFADKITLTLTKDG--EVIVEDNGRGIPVGVQQDSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|98990342|gb|ABF60240.1| DNA gyrase subunit B [Entomoplasma ellychniae]
          Length = 553

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  + ++   +   G     + DNG G+            + +   + H
Sbjct: 14 EILDNSIDEAMAGFADKITLTLTKDG--EVIVEDNGRGIPVGVQQDSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|33860313|gb|AAQ54936.1| DNA gyrase subunit B [Mesoplasma corruscae]
          Length = 534

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  + ++   +   G     + DNG G+            + +   + H
Sbjct: 9  EILDNSIDEAMAGFADKITLTLTKDG--EVIVEDNGRGIPVGVQQDSGKSALELVFTQLH 66

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 67 AGGKFDSDSYKIS 79


>gi|86133355|ref|ZP_01051937.1| DNA topoisomerase IV subunit B [Polaribacter sp. MED152]
 gi|85820218|gb|EAQ41365.1| DNA topoisomerase IV subunit B [Polaribacter sp. MED152]
          Length = 619

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 76/245 (31%), Gaps = 37/245 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++NS+D     A    +E  I G   S   + D G G+   ++   V +  T    
Sbjct: 46  VKEVLDNSIDEYVMGAG-KTIEISIHG---SKVTVRDYGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -SKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            SK    S   + + T      A+ ++ +   +   SR  ++ +      + E    +  
Sbjct: 102 DSKAFKKSVGLNGVGTK-----AVNALSSYFRVE-SSREGKSASAEFSQGNLENEEFLEE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K+ +     +  +++      P ++       F +
Sbjct: 156 TSRRKGTKVS-------FIPDETIFKNYKFRNEYVAKMLKNYVYLNPGLTIIFNGEKFFS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
               +  +   +   +    I  + G+D          + +E       G          
Sbjct: 209 KNGLKDLLEDNNNTDDMLYPIIHLKGDDIEIAVTHSKTQYSEEYYSFVNG--QHTTQGGT 266

Query: 249 QFYVF 253
               F
Sbjct: 267 HQSAF 271


>gi|26986758|ref|NP_742183.1| DNA gyrase subunit B [Pseudomonas putida KT2440]
 gi|148545263|ref|YP_001265365.1| DNA gyrase subunit B [Pseudomonas putida F1]
 gi|24981349|gb|AAN65647.1|AE016191_4 DNA gyrase, subunit B [Pseudomonas putida KT2440]
 gi|148509321|gb|ABQ76181.1| DNA gyrase subunit B [Pseudomonas putida F1]
 gi|313496421|gb|ADR57787.1| GyrB [Pseudomonas putida BIRD-1]
          Length = 806

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDITVIIHPD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   V
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLVLTVRRSG--KIWEQTYVHGVPQAPMAV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T                  K+     +++   IR ++     V       +S + 
Sbjct: 159 VGDSETT----GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N+   +         G      +N         F 
Sbjct: 215 E--FFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|328956387|ref|YP_004373773.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
 gi|328672711|gb|AEB28757.1| DNA gyrase, subunit B [Carnobacterium sp. 17-4]
          Length = 647

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +  +I         + DNG G+  +
Sbjct: 53 EIVDNSIDEALAGFADEINLIIEKD--ESITVIDNGRGIPVD 92


>gi|326383914|ref|ZP_08205598.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
 gi|326197373|gb|EGD54563.1| DNA gyrase subunit B [Gordonia neofelifaecis NRRL B-59395]
          Length = 684

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 15/54 (27%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  ++RV+  + A GG    ++ D+G GM        V  H T
Sbjct: 56 EVVDNSVDEAMAGYATRVDVTLLADGG---IRVVDDGRGMP-------VGMHAT 99


>gi|297625347|ref|YP_003687110.1| ATP-binding region, ATPase-like:Histidine kinase, Histidine kinase
           A-like precursor [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921112|emb|CBL55659.1| ATP-binding region, ATPase-like:Histidine kinase, Histidine kinase
           A-like precursor [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 16/69 (23%)

Query: 22  RPSIAIKELIENSLDAESS-------------RVETVIAGGGKSF-FQITDNGFGMTSEE 67
           R +  I  L+ N+L   ++              V   +   G     Q+ D+G G++ EE
Sbjct: 255 RFAQVITNLLANAL--NATVSAGRGRTGDRGGHVHVGVRRHGNEVAVQVRDDGVGISPEE 312

Query: 68  IPMAVQRHC 76
           +P    R  
Sbjct: 313 LPHVFDRFA 321


>gi|294634295|ref|ZP_06712836.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685]
 gi|291092288|gb|EFE24849.1| DNA topoisomerase IV, B subunit [Edwardsiella tarda ATCC 23685]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  ++RVE ++        ++ D+G GM      EE    I
Sbjct: 31  TRPNHLGQEVIDNSIDEALAGHATRVEVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAI 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+SH + +  R          +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSHRVEVSVRRDGQIYQIAFENGEK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            E++     V   N GT V              F  S +   + ++ +++  A+  P V 
Sbjct: 148 VEELHVTGTVGRRNTGTSVHFW-------PDAQFFDSARFSVSRLSHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      S +             E ++ +
Sbjct: 201 ILFRDLVNGSEQRWCYQDGLTDYLMESVNGL 231


>gi|284802097|ref|YP_003413962.1| hypothetical protein LM5578_1852 [Listeria monocytogenes 08-5578]
 gi|284995239|ref|YP_003417007.1| hypothetical protein LM5923_1804 [Listeria monocytogenes 08-5923]
 gi|284057659|gb|ADB68600.1| hypothetical protein LM5578_1852 [Listeria monocytogenes 08-5578]
 gi|284060706|gb|ADB71645.1| hypothetical protein LM5923_1804 [Listeria monocytogenes 08-5923]
          Length = 822

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGK--SFFQITDNGFGMTSEEIP 69
          E++     A+ ELI+NS DA++  V+ ++       S   + D G GMT E+  
Sbjct: 19 ELVTDFVTALVELIKNSYDADAYGVKIILDKPNTPESKIILIDTGSGMTQEDFE 72


>gi|210634747|ref|ZP_03298275.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM
          13279]
 gi|210158687|gb|EEA89658.1| hypothetical protein COLSTE_02202 [Collinsella stercoris DSM
          13279]
          Length = 674

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+++NS+D   A   +++E  +     +   + DNG G+  +E P
Sbjct: 43 EIVDNSVDEAMAGFCTKIEVTVHPD--NSITVVDNGRGIPVDEHP 85


>gi|332881000|ref|ZP_08448670.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681174|gb|EGJ54101.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 655

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 32/222 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 55  LKEVIDNSIDEFKMNAG-RRIEITVEDN--LRVSVRDYGRGIPLGKLIEAVSMLNTGGKY 111

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S        A          S  P 
Sbjct: 112 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVRSHRDGEMRRATFERGILTGESTEPT 165

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           A   GT +                K+    T  I  ++R        ++          +
Sbjct: 166 ADENGTFIYFE-------PDSALFKNYTFRTEFIETMLRNYTYLNTGLTIMFNGRRIHSR 218

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           +    +   +   +    I  + GED         +   E  
Sbjct: 219 NGLVDLLNDNMTNDGLYPIIHLKGEDIEIAFTHTGQYGEEYY 260


>gi|260890953|ref|ZP_05902216.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
 gi|260859506|gb|EEX74006.1| DNA gyrase, B subunit [Leptotrichia hofstadii F0254]
          Length = 660

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAVQ-RHC 76
           E+++NS+D   A    ++   I  G     +++DNG G+           + + +   H 
Sbjct: 41  EIVDNSVDEALAGICDKITVKILEGNI--IEVSDNGRGIPVGMHKTGKSTLEVVLTVLHA 98

Query: 77  TSKISDDFSNIH 88
             K  +D   + 
Sbjct: 99  GGKFDNDNYKVS 110


>gi|257127028|ref|YP_003165142.1| DNA gyrase subunit beta [Leptotrichia buccalis C-1013-b]
 gi|257050967|gb|ACV40151.1| DNA gyrase, B subunit [Leptotrichia buccalis C-1013-b]
          Length = 660

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAVQ-RHC 76
           E+++NS+D   A    ++   I  G     +++DNG G+           + + +   H 
Sbjct: 41  EIVDNSVDEALAGICDKITVKILEGNI--IEVSDNGRGIPVGMHKTGKSTLEVVLTVLHA 98

Query: 77  TSKISDDFSNIH 88
             K  +D   + 
Sbjct: 99  GGKFDNDNYKVS 110


>gi|150018817|ref|YP_001311071.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Clostridium beijerinckii NCIMB 8052]
 gi|149905282|gb|ABR36115.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Clostridium beijerinckii NCIMB 8052]
          Length = 524

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           E     +  LIENS+DA     +  +   I     +    + DNG G+            
Sbjct: 420 EELGSVVGNLIENSIDAAKNDGTGEIYMKIFEEDDQMKIMVKDNGCGIPDNIRNSIYNIG 479

Query: 76  CTSK 79
            TSK
Sbjct: 480 ITSK 483


>gi|194339107|gb|ACF49469.1| GyrB [Amycolatopsis saalfeldensis]
          Length = 455

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  ++RVE  + A GG    ++ D+G G+  +
Sbjct: 4  VQEVVDNSVDEAMAGHATRVEVTLLADGG---VRVVDDGRGIPVD 45


>gi|190894939|ref|YP_001985232.1| heat shock protein 90 [Rhizobium etli CIAT 652]
 gi|190700600|gb|ACE94682.1| heat shock chaperone protein, Hsp90 family [Rhizobium etli CIAT
           652]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 39/168 (23%)

Query: 27  IKELIENSLDA---------------ES---SRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                S   SR+   +    +    + DNG GM  +E+
Sbjct: 37  LRELISNAADACEKLRYEAIEAPALLGSVAESRITLSLDDESRQLV-VEDNGIGMQRDEM 95

Query: 69  PMAV------------QRHCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPP 113
             A+             R   SK  +    I  F  GF      S   V+  + ++SR  
Sbjct: 96  IEALGTIARSGTRAFMDRIAASKAGEGAQLIGQFGVGF-----YSCFMVADRVDVISRRA 150

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
            +   A+ +  G+   SV  V +        R +   +     +    
Sbjct: 151 GSEEAAKWSSDGKGSYSVAAVNLAEAPERGTRIVLHLMEDAKKYTSRW 198


>gi|171920906|ref|ZP_02932057.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          13 str. ATCC 33698]
 gi|188524343|ref|ZP_03004375.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          12 str. ATCC 33696]
 gi|198273777|ref|ZP_03206311.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4
          str. ATCC 27816]
 gi|209554526|ref|YP_002284909.1| DNA topoisomerase IV subunit B [Ureaplasma urealyticum serovar 10
          str. ATCC 33699]
 gi|171903123|gb|EDT49412.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          13 str. ATCC 33698]
 gi|195659753|gb|EDX53133.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          12 str. ATCC 33696]
 gi|198249532|gb|EDY74314.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 4
          str. ATCC 27816]
 gi|209542027|gb|ACI60256.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar
          10 str. ATCC 33699]
          Length = 642

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  V+     +   I D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNISVVLHED--NSISILDDGRGIPVD 80


>gi|134096626|ref|YP_001102287.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|291005720|ref|ZP_06563693.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
 gi|133909249|emb|CAL99361.1| DNA gyrase subunit B [Saccharopolyspora erythraea NRRL 2338]
          Length = 630

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  ++RVE  + A GG    ++ D+G G+  +
Sbjct: 15 VQEVVDNSVDEAMAGYATRVEVTLLADGG---VRVVDDGRGIPVD 56


>gi|86159262|ref|YP_466047.1| DNA topoisomerase VI subunit B [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775773|gb|ABC82610.1| DNA topoisomerase VI, B subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 48/194 (24%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--------------FFQITDNGFGMTSEE 67
           IKE ++NSLDA  E+     +   +   G +                 + DNG G+   +
Sbjct: 34  IKEAVDNSLDACEEAGILPEITIEVRDLGLNDQGEGELTKGEGRFVVVVEDNGPGIVKAQ 93

Query: 68  IPMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLT------LMSRPPQNNTG-- 118
            P    +    SK         + G +G  + +      LT      ++SR  +      
Sbjct: 94  APKIFGKLLYGSKFH---RLKQSRGQQGIGISAAAMYGQLTTGQPIRMISRTGKGKPAFG 150

Query: 119 ------AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
                  +                  GT VE+  +            + Q     +   +
Sbjct: 151 LEIQIDTRKNNPVVTAERQLDDWHEHGTRVELEIV-----------ANWQQGQRFVNRYV 199

Query: 173 RRMAIAYPKVSFTF 186
              A++ P  +F +
Sbjct: 200 EHTALSNPHATFHY 213


>gi|260887491|ref|ZP_05898754.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|330837873|ref|YP_004412453.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|260862778|gb|EEX77278.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
 gi|329745637|gb|AEB98993.1| DNA gyrase, B subunit [Selenomonas sputigena ATCC 35185]
          Length = 690

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     ++  I     +   + DNG G+  +
Sbjct: 98  VYEVVDNSIDEALAGYCDHIDVTIEKD--NSITVVDNGRGIPVD 139


>gi|106734195|gb|ABF82574.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG+G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NSIMVEDNGWGIPVD 44


>gi|34541335|ref|NP_905814.1| DNA gyrase subunit B [Porphyromonas gingivalis W83]
 gi|188994277|ref|YP_001928529.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277]
 gi|34397651|gb|AAQ66713.1| DNA gyrase, B subunit [Porphyromonas gingivalis W83]
 gi|188593957|dbj|BAG32932.1| DNA gyrase B subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     VE +I     +   + DNG G+  +
Sbjct: 48 VYEVVDNSIDEALAGYCDNVEVIIEED--NSITVRDNGRGIPVD 89


>gi|313677558|ref|YP_004055554.1| integral membrane sensor signal transduction histidine kinase
            [Marivirga tractuosa DSM 4126]
 gi|312944256|gb|ADR23446.1| integral membrane sensor signal transduction histidine kinase
            [Marivirga tractuosa DSM 4126]
          Length = 1216

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 33   NSLDAE----SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            N++ +     +  ++  I    GK    ITDNG G+  +        + T+K
Sbjct: 1123 NAIQSGDGSQAITIKIKIELLEGKIRISITDNGLGIPEDNYNKVFLPNFTTK 1174


>gi|158319256|ref|YP_001511763.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
 gi|158139455|gb|ABW17767.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
          Length = 584

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 23  PSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
               I  L+ N+LDA        ++     G     +I D G G+  E +        T+
Sbjct: 473 LQQVILNLVTNALDAMPDGGKLTIKIRCE-GNLIKIEIIDTGEGILKENLKYVFDPFYTT 531

Query: 79  K 79
           K
Sbjct: 532 K 532


>gi|120401034|ref|YP_950863.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1]
 gi|119953852|gb|ABM10857.1| DNA gyrase subunit B [Mycobacterium vanbaalenii PYR-1]
          Length = 675

 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++N++D   A  +++V+  I   GG    Q+TD+G G+ 
Sbjct: 48 EVVDNAVDEAMAGFATKVDVRILEDGG---VQVTDDGRGIP 85


>gi|224372301|ref|YP_002606673.1| histidine kinase [Nautilia profundicola AmH]
 gi|223590038|gb|ACM93774.1| histidine kinase [Nautilia profundicola AmH]
          Length = 360

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHC 76
           LIENS+   +S+++ ++         I  DNG G+  E++P       
Sbjct: 262 LIENSIKYGASKIDIILKKEKNKIVLILKDNGIGIPKEKLPFIFDEFY 309


>gi|254427031|ref|ZP_05040738.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881]
 gi|196193200|gb|EDX88159.1| DNA topoisomerase IV, B subunit [Alcanivorax sp. DG881]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  +  ++  +   GG    ++ D+G GM  +
Sbjct: 31 RPNHLAQEVIDNSVDEALAGHAKSIKVTLLKDGG---VEVEDDGRGMPVD 77


>gi|161528428|ref|YP_001582254.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160339729|gb|ABX12816.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 505

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 22  RPSIAIKELIENSLDAESSR-----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R S  +  +++N++D   +      + + +   G++   I DNG G+  E      ++  
Sbjct: 398 RISQVVTNIVKNAVDFVPTTNGKIVISSDVTDDGQTLISIEDNGIGIPEEHHETVFEKFH 457


>gi|110835355|ref|YP_694214.1| DNA topoisomerase IV subunit B [Alcanivorax borkumensis SK2]
 gi|110648466|emb|CAL17942.1| DNA topoisomerase IV, B subunit [Alcanivorax borkumensis SK2]
          Length = 628

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  +  ++  +   GG    ++ D+G GM  +
Sbjct: 31 RPNHLAQEVIDNSVDEALAGHAKSIKVTLFKDGG---VEVEDDGRGMPVD 77


>gi|294676320|ref|YP_003576935.1| signal transduction histidine kinase HupT [Rhodobacter capsulatus
           SB 1003]
 gi|310270|gb|AAC32031.1| sensor-regulator protein [Rhodobacter capsulatus]
 gi|294475140|gb|ADE84528.1| signal transduction histidine kinase HupT [Rhodobacter capsulatus
           SB 1003]
          Length = 456

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 14  IAAGEIIERP---SIAIKELIENSLDA------ESSRVETVIA-GGGKSFFQITDNGFGM 63
           +AA E+I RP      +  L++N+LDA         R+        G+    ++D G G+
Sbjct: 335 LAALEVIGRPGHIQQVVMNLVQNALDAMGDFQDG--RIRIEARIAAGRGELVVSDTGPGV 392

Query: 64  TSEEIPMAVQRHCTSK 79
             +  P       T+K
Sbjct: 393 AEDVAPTIFDPFFTTK 408


>gi|325336741|gb|ADZ13015.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Riemerella anatipestifer RA-GD]
          Length = 644

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I  G  +   + DNG G+  +
Sbjct: 40 VYEVVDNSIDEALAGYCDTITVTIHEG--NAISVKDNGRGIPVD 81


>gi|313205819|ref|YP_004044996.1| DNA gyrase subunit b [Riemerella anatipestifer DSM 15868]
 gi|312445135|gb|ADQ81490.1| DNA gyrase subunit B [Riemerella anatipestifer DSM 15868]
 gi|315022785|gb|EFT35809.1| DNA gyrase subunit B [Riemerella anatipestifer RA-YM]
          Length = 644

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I  G  +   + DNG G+  +
Sbjct: 40 VYEVVDNSIDEALAGYCDTITVTIHEG--NAISVKDNGRGIPVD 81


>gi|313204151|ref|YP_004042808.1| DNA gyrase subunit b [Paludibacter propionicigenes WB4]
 gi|312443467|gb|ADQ79823.1| DNA gyrase subunit B [Paludibacter propionicigenes WB4]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I     +   + DNG G+  +
Sbjct: 49 VYEVVDNSIDEAMAGHCNNIQVFINEN--NSITVIDNGRGIPVD 90


>gi|209881618|ref|XP_002142247.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557853|gb|EEA07898.1| hypothetical protein CMU_029730 [Cryptosporidium muris RN66]
          Length = 536

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 18/70 (25%)

Query: 28 KELIENSLDAESSR-----------VETVI-------AGGGKSFFQITDNGFGMTSEEIP 69
          KEL +NS+DA   R           ++  +           +   ++ D G G++ E I 
Sbjct: 30 KELFDNSMDACRKREHGQWGNLMPKIQVSVMYDYILDRNDPRLSIRVQDTGCGISLESID 89

Query: 70 MAVQRHCTSK 79
          +      TSK
Sbjct: 90 LLGTLFGTSK 99


>gi|163787244|ref|ZP_02181691.1| two-component sensor histidine kinase, phosphate regulation
           [Flavobacteriales bacterium ALC-1]
 gi|159877132|gb|EDP71189.1| two-component sensor histidine kinase, phosphate regulation
           [Flavobacteriales bacterium ALC-1]
          Length = 347

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           ER    +  LI NS+    +  ++ +     I    K+  ++TDNG G+    +    +R
Sbjct: 237 ERIQQVLTNLIVNSIKYGREQGTTEISIENLIKN--KAIIRVTDNGEGIAKANLQRLFER 294

Query: 75  HC 76
             
Sbjct: 295 FY 296


>gi|115381176|gb|ABI96237.1| DNA gyrase subunit B [Spiroplasma insolitum]
          Length = 559

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++++   I         +TDNG G+  E
Sbjct: 14 EVVDNSIDEVLANFANKITITINKD--ESITVTDNGRGIPIE 53


>gi|85374021|ref|YP_458083.1| DNA topoisomerase IV subunit B [Erythrobacter litoralis HTCC2594]
 gi|84787104|gb|ABC63286.1| topoisomeraseB subunit [Erythrobacter litoralis HTCC2594]
          Length = 658

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++N++D   A  +SR+   +  G  +   + DNG G+  +E P 
Sbjct: 50 VAEVLDNAMDEAVAGHASRIAITLEEG--NTVSVADNGRGIPVDEHPK 95


>gi|328876798|gb|EGG25161.1| hypothetical protein DFA_03409 [Dictyostelium fasciculatum]
          Length = 2186

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 17/75 (22%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAESSR--------VETVIAG---GGKSFFQITDNGFG 62
           + AG        A+ E I+NS+  +++R        ++  I        S   I DNG G
Sbjct: 221 LKAGTSEYNLPNAVAEFIDNSI--QATRNNDFSDKHIKITIKKPDHNNISSIIIWDNGSG 278

Query: 63  MTSEEIPMAVQRHCT 77
           M  EE+    QR  T
Sbjct: 279 MNKEEL----QRWAT 289


>gi|310778432|ref|YP_003966765.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309747755|gb|ADO82417.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 553

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 23  PSIAIKELIENSL---DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  +K LIEN++   D +   +   I     +    I DNG G+  E+I    +R  
Sbjct: 448 LTTILKNLIENAIIYNDKKP-VIRVEIKEIYDRYKMVIEDNGLGIPEEDIENIFERFY 504


>gi|229163774|ref|ZP_04291718.1| Sensor histidine kinase [Bacillus cereus R309803]
 gi|228619667|gb|EEK76549.1| Sensor histidine kinase [Bacillus cereus R309803]
          Length = 307

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  E+IP   +   T+K
Sbjct: 216 LIKNAIEAMSIGGTITIKVTVEDG--IIVQVKDEGCGIPKEKIPKLNEAFYTTK 267


>gi|281421771|ref|ZP_06252770.1| sensor histidine kinase [Prevotella copri DSM 18205]
 gi|281404266|gb|EFB34946.1| sensor histidine kinase [Prevotella copri DSM 18205]
          Length = 388

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 26  AIKELIENSLDA-ESS--RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L +N++DA  ++  ++   +     K+  +++D G G+  +++    +   T+K
Sbjct: 288 VVENLSKNAVDAMGANGGQITLHVEETDDKAIIEVSDTGNGIRKKDLKNVFRPGFTTK 345


>gi|323698745|ref|ZP_08110657.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323458677|gb|EGB14542.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 558

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 32/90 (35%)

Query: 6   LSEKI------INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDN 59
           L   +       NQI   ++I         L+EN++DA    ++     G  +    TD+
Sbjct: 431 LDPDLPLITTDANQI--QQVILN-------LLENAIDA----ID---RDGQITVITRTDD 474

Query: 60  ----------GFGMTSEEIPMAVQRHCTSK 79
                     G G+  E +        T+K
Sbjct: 475 MGVVLNIADSGPGIPKEYLAKVFDPFFTTK 504


>gi|47779376|gb|AAT38605.1| predicted topoisomerase IV subunit B [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 630

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 105/247 (42%), Gaps = 30/247 (12%)

Query: 23  PSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE----------EI 68
           P+  I+E+++NS+D A     + ++  I   G  F  ++D+G GM  +          E+
Sbjct: 33  PNHLIQEVLDNSVDEAISGHCTNIKIKIQKDG--FINVSDDGRGMPVDIHPEHKLSGVEL 90

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKI 128
            +  + H  +K S D  N  + G  G  +  + A+S  +L     +++   ++  S    
Sbjct: 91  IL-CKLHAGAKFSGDEYN-FSGGLHGVGVSVVNALSE-SLQVNIKRDSKEHEMRFSNGDK 147

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
            +   V  + G       + F      ++ +S++++TN +  +++  A+  P ++     
Sbjct: 148 KNELKVVGDVGLRNTGTSIKFKPNP--DYFESDKIKTNELKHLLKAKAVLCPGLTI-DFH 204

Query: 189 IKSNRYKMNFQSTNG------NFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTF 242
            +S + K+ +   +G      +  + I  ++ E  +++    +++   +    +T  P  
Sbjct: 205 DESKKEKIKWFYEDGLKSYLEDQSDGIDLILSESIVSSNSSKDQEVEFVIN--WTSKPYK 262

Query: 243 NRGNANQ 249
           N+ +   
Sbjct: 263 NKLDETY 269


>gi|15805770|ref|NP_294467.1| sensor histidine kinase [Deinococcus radiodurans R1]
 gi|6458453|gb|AAF10322.1|AE001930_3 sensor histidine kinase [Deinococcus radiodurans R1]
          Length = 566

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    I  L+ N+L A +  V         G +    + D+G G+ +E +     R  
Sbjct: 447 DRLRQVIINLVGNALKAGAKTVTLESSSQEEGREVRLSVRDDGPGIPAEHLSRLFDRFY 505


>gi|117927216|ref|YP_871767.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B]
 gi|117647679|gb|ABK51781.1| DNA gyrase subunit B [Acidothermus cellulolyticus 11B]
          Length = 666

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AES-SRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++N++D   A +  R++  + A GG    ++ DNG G+  +E P
Sbjct: 47 VYEVVDNAVDEALAGACDRIDVTLLADGG---VRVVDNGRGIPVDEHP 91


>gi|322376370|ref|ZP_08050863.1| DNA gyrase, B subunit [Streptococcus sp. M334]
 gi|321282177|gb|EFX59184.1| DNA gyrase, B subunit [Streptococcus sp. M334]
          Length = 648

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ ++  I     +   + D+G G+  +
Sbjct: 49 EIVDNSIDEALAGFANHIQVFIEPD--NSITVVDDGRGIPVD 88


>gi|307825807|ref|ZP_07656023.1| histidine kinase [Methylobacter tundripaludum SV96]
 gi|307733115|gb|EFO03976.1| histidine kinase [Methylobacter tundripaludum SV96]
          Length = 144

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          E I     A+ EL +N+ DA +  V   I  G      I D+G GM+ EE 
Sbjct: 20 EQIADCPTAVSELWKNAYDAYAREVALHIFDGEVPIAAIVDDGHGMSREEF 70


>gi|299147112|ref|ZP_07040179.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
 gi|298514997|gb|EFI38879.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
          Length = 652

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E +I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALAGYCDHIEVIINED--NSITVQDNGRGIPVD 88


>gi|295979445|dbj|BAJ07395.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G     + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVEVILNADG--SVTVRDDGRGIPVD 53


>gi|295979443|dbj|BAJ07394.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
 gi|295979447|dbj|BAJ07396.1| DNA gyrase subunit B [Rhodopseudomonas palustris]
          Length = 304

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G     + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVEVILNADG--SVTVRDDGRGIPVD 53


>gi|225550647|ref|ZP_03771596.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
          str. ATCC 27814]
 gi|225379801|gb|EEH02163.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 2
          str. ATCC 27814]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  V+     +   I D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNISVVLHED--NSISILDDGRGIPVD 80


>gi|115375741|ref|ZP_01462994.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824108|ref|YP_003956466.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367215|gb|EAU66197.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397180|gb|ADO74639.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+EN+     A +  +   +  GG      + D+G G+   +     QR  
Sbjct: 384 DRLEQVLVNLLENAHKYSPAGA-PITVEVEEGGDEARIHVKDHGIGIPGADQAQVFQRFY 442


>gi|238763429|ref|ZP_04624392.1| Sensor kinase dpiB [Yersinia kristensenii ATCC 33638]
 gi|238763510|ref|ZP_04624472.1| Sensor kinase dpiB [Yersinia kristensenii ATCC 33638]
 gi|238698292|gb|EEP91047.1| Sensor kinase dpiB [Yersinia kristensenii ATCC 33638]
 gi|238698373|gb|EEP91127.1| Sensor kinase dpiB [Yersinia kristensenii ATCC 33638]
          Length = 558

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 23  PSIAIKELIENSLDA------ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
            +  +  L++N+ +A         +VE  ++  G     ++ D+G G+  +      +R 
Sbjct: 452 LAAIVGNLLDNAFEASLKNPEGDKQVEIYLSDEGDDVILEVADHGCGIDPQLQDSLFERG 511

Query: 76  CTSKISDD----FSNIHTF 90
            +SK SD+       + T+
Sbjct: 512 ASSKNSDEHGIGLYLVATY 530


>gi|116253167|ref|YP_769005.1| C4-dicarboxylate transport two-component sensor histidine kinase
           transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257815|emb|CAK08913.1| putative C4-dicarboxylate transport two-component sensor histidine
           kinase transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 622

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 24/102 (23%)

Query: 12  NQIAAGEIIERPSIAIKELIENSLDAES-----SRVETVIA-GGGKSFFQITDNGFGMTS 65
           N+I       R    +  L++N+L+A +      RVE   +   G     + DNG G+  
Sbjct: 516 NRI-------RLEQVLINLLQNALEAVAPKAGEGRVEIRTSTDAGMVTVTVADNGPGIPP 568

Query: 66  EEIPMAVQRHCTSK---------ISDDFSNIHTFGFRGEALP 98
           E          TSK         IS D   +  +G R E L 
Sbjct: 569 EIRKGLFTPFNTSKESGLGLGLVISKDI--VGDYGGRMEVLS 608


>gi|120404639|ref|YP_954468.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957457|gb|ABM14462.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 379

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 24/91 (26%)

Query: 22  RPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           R +  I  L++N+L           DA +          G+    + DNG G+ +E +P 
Sbjct: 267 RLAQVIGNLLDNALRHTPARGRVEVDAAAK--------PGEVIITVGDNGDGIAAEHLPH 318

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
             +R        D +   + G  G  L  I 
Sbjct: 319 VFERFY----RADVARDRSHGGAGIGLA-IA 344


>gi|262382739|ref|ZP_06075876.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_33B]
 gi|262295617|gb|EEY83548.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_33B]
          Length = 916

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 38  ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            S R+E     GG+ F ++ D G G+    +P    R  T
Sbjct: 546 GSVRIELT-EEGGRVFIRVIDTGSGIRPANLPHLFDRFYT 584


>gi|296127762|ref|YP_003635014.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
 gi|296019578|gb|ADG72815.1| DNA gyrase, B subunit [Brachyspira murdochii DSM 12563]
          Length = 637

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I        ++ D+G G+  +
Sbjct: 42 VYEVVDNSIDEAMAGYCKNITVTIEKDNI--IKVEDDGRGIPVD 83


>gi|254390879|ref|ZP_05006090.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|294816152|ref|ZP_06774795.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|326444485|ref|ZP_08219219.1| putative DNA gyrase B subunit [Streptomyces clavuligerus ATCC
           27064]
 gi|197704577|gb|EDY50389.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
 gi|294328751|gb|EFG10394.1| DNA topoisomerase II [Streptomyces clavuligerus ATCC 27064]
          Length = 643

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + EL++N++D   A     +   +   G     +TD+G G+ ++  P A           
Sbjct: 39  VLELVDNAVDEAAAGHCGAISVELYDDG--SCSVTDDGRGIPTDPHPAAGVPACELVLTT 96

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSH 105
            H   K  DD S   + G  G  L  + A+S 
Sbjct: 97  LHSGGKF-DDSSYATSAGLHGVGLACVNALSE 127


>gi|167043616|gb|ABZ08310.1| putative DNA gyrase B [uncultured marine microorganism
          HF4000_APKG2M17]
          Length = 655

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++ +I   G     I DNG G+  +
Sbjct: 53 VNEVVDNSIDEALAGHCDAIDVIIHEDG--SISIKDNGRGIPVD 94


>gi|119475370|ref|ZP_01615723.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119451573|gb|EAW32806.1| DNA topoisomerase IV, B subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 627

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 24/215 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP------- 69
            RP+   +E+I+NS+D   A  + +++ ++   G      +D+G GM  +  P       
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGFAHQIDVIMHKDG--SLTCSDDGRGMPVDMHPEQKKPGV 86

Query: 70  --MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAI-SG 125
             +    H   K + D     + G  G  +  + A+S  L +  R        +      
Sbjct: 87  EVILTTLHAGGKFNSDNYQ-FSGGLHGVGVSVVNALSKLLEITIRRDGEVYKMEFKNGDK 145

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
            K   V        T   +R          ++  S +     +  V+R  A+  P +  T
Sbjct: 146 SKDLEVIDSCGKRNTGTSIR-----FTPDGSYFDSAKFSVARMKHVLRAKAVLCPGLRVT 200

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINN 220
               +++  K  +   +G     ++   G + +  
Sbjct: 201 C-LDEASGEKEEWHYEDGLRDYMVASTHGWETLPK 234


>gi|19909707|dbj|BAB87049.1| DNA gyrase subunit B [Pseudomonas sp. Tol5]
          Length = 289

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 26/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 11  EVVDNSIDEALAGHCDDISIIIHPD--ESITVKDNGRGIPVDVHKEEGVSAAEVIMTVLH 68

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +             +
Sbjct: 69  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELVLTVRRSG--KIWEQTYVHGVPQEPMKI 125

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T            A     K+     +++   IR ++     V       +S + 
Sbjct: 126 VGDSETTGTQIHF----KASSETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKE 181

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N V       E  +     +   N         F 
Sbjct: 182 ELFKY--EGGLRAFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFT 238

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 239 NNIPQRD 245


>gi|330821406|ref|YP_004350268.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia gladioli BSR3]
 gi|327373401|gb|AEA64756.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia gladioli BSR3]
          Length = 475

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 18  EIIER---PSIAIKELIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
           E++ R    +  I  L++N++    D  +  V   I   GG +   + D+G G+ S+E  
Sbjct: 348 EVVARADLLADLIGNLVDNAIRYAGD-GA-VVTVRIGREGGHARLDVIDDGPGIASQERE 405

Query: 70  MAVQRHCTS 78
              +R   S
Sbjct: 406 AVFERFYRS 414


>gi|332162978|ref|YP_004299555.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604198|emb|CBY25696.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667208|gb|ADZ43852.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862268|emb|CBX72429.1| DNA topoisomerase 4 subunit B [Yersinia enterocolitica W22703]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAHRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQELQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDQVNNTEQRWCYADGLTDYLMEAVNGL 231


>gi|303229809|ref|ZP_07316589.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302515569|gb|EFL57531.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 467

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMT 64
           +   +I  I   E+      A+  LI+N++    S +             ++TDNG G+ 
Sbjct: 344 IDSDLI--ITGHEV--SLRRAVTNLIDNAIKFTKSTINITAKRNNLYLIIEVTDNGIGIE 399

Query: 65  SEEIPMAVQR 74
            + +     R
Sbjct: 400 PDNLSQIFNR 409


>gi|262370827|ref|ZP_06064151.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046]
 gi|262314189|gb|EEY95232.1| topoisomerase IV subunit B [Acinetobacter johnsonii SH046]
          Length = 626

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  ++++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHANKITVTVYKDG--SLSVEDNGRGMPVD 76


>gi|261819682|ref|YP_003257788.1| DNA topoisomerase IV subunit B [Pectobacterium wasabiae WPP163]
 gi|261603695|gb|ACX86181.1| DNA topoisomerase IV, B subunit [Pectobacterium wasabiae WPP163]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S       + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSGKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            ++++        N GT V              F  S +   + +T +++  A+  P V 
Sbjct: 148 VQELTVTGTCGRRNTGTRVHFW-------PDETFFDSARFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +        N    E I+ +
Sbjct: 201 IVFKDKVNNTEQRWCYQDGLNDYLCEAINGL 231


>gi|257068118|ref|YP_003154373.1| histidine kinase [Brachybacterium faecium DSM 4810]
 gi|256558936|gb|ACU84783.1| histidine kinase [Brachybacterium faecium DSM 4810]
          Length = 415

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 30  LIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           LI N++   DA  +R+   +   GG     + D G G+  + +    +R 
Sbjct: 278 LISNAISYSDAR-TRIGVAVRRDGGMVEISVKDQGIGIAKDHLERVFERF 326


>gi|261856340|ref|YP_003263623.1| DNA topoisomerase IV subunit beta [Halothiobacillus neapolitanus
           c2]
 gi|261836809|gb|ACX96576.1| DNA topoisomerase IV, B subunit [Halothiobacillus neapolitanus c2]
          Length = 638

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 20/87 (22%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   +  +SR++ V+   G     +TD+G GM  +         +
Sbjct: 35  TRPNHLAQEVIDNSVDEAVSGFASRIDVVLHADG--SLSVTDDGRGMPVDIHPEHGVTGV 92

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRG 94
            + + R H   K SD      T+ F G
Sbjct: 93  ELILTRLHAGGKFSD-----KTYRFSG 114


>gi|149277244|ref|ZP_01883386.1| two-component sensor histidine kinase, phosphate regulation
           [Pedobacter sp. BAL39]
 gi|149232121|gb|EDM37498.1| two-component sensor histidine kinase, phosphate regulation
           [Pedobacter sp. BAL39]
          Length = 341

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+NSL    D  S+ ++       +   ++TD+G G+  + +P   +R  
Sbjct: 241 LIQNSLKYGKDHGSTAIKI-FELHDQYLVEVTDDGIGIDEKHLPRLFERFY 290


>gi|123443845|ref|YP_001007816.1| DNA topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090806|emb|CAL13688.1| topoisomerase IV subunit B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 631

 Score = 46.2 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAHRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQELQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDQVNNTEQRWCYADGLTDYLMEAVNGL 231


>gi|313500371|gb|ADR61737.1| Integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida BIRD-1]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA       R+E  I   G      + D+G G+   ++        
Sbjct: 476 RLEQVLINLLHNALDAMLDKRYKRLEIRIEPDGELWRLSVLDSGGGIAEADLAKVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|239622759|ref|ZP_04665790.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis CCUG 52486]
 gi|239514756|gb|EEQ54623.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis CCUG 52486]
          Length = 494

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTS 65
            + A+ ++I+NS+ A ++++  +  G G+  +  I DNG GM+ 
Sbjct: 22 DLNTAVADIIDNSIAANATKISILYFGQGEEPYIAIVDNGNGMSE 66


>gi|121893|sp|P13364|GYRB_PSEPU RecName: Full=DNA gyrase subunit B
 gi|45694|emb|CAA38447.1| unnamed protein product [Pseudomonas putida]
          Length = 806

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDITVIIHTD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   V
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLVLTVRRSG--KIWEQTYVHGVPQAPMAV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T                  K+     +++   IR ++     V       +S + 
Sbjct: 159 VGESETT----GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N+   +         G      +N         F 
Sbjct: 215 E--FFKYEGGLRAFVEYLNTNKTPVNSQVFHFSVQREDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|148549526|ref|YP_001269628.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
 gi|148513584|gb|ABQ80444.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA       R+E  I   G      + D+G G+   ++        
Sbjct: 476 RLEQVLINLLHNALDAMLDKRYKRLEIRIEPDGELWRLSVLDSGGGIAEADLAKVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|296270359|ref|YP_003652991.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093146|gb|ADG89098.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
          43833]
          Length = 690

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   +   +R+E  +   G    ++ DNG G+  +
Sbjct: 46 EIVDNAVDEALSGYCTRIEVELYPDG--SIEVRDNGRGIPVD 85


>gi|226226219|ref|YP_002760325.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27]
 gi|226089410|dbj|BAH37855.1| DNA gyrase subunit B [Gemmatimonas aurantiaca T-27]
          Length = 658

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  + RVE  I         + D+G G+  +
Sbjct: 50 VYEVVDNSIDEALAGFAKRVEVTIHAD--DSISVEDDGRGIPVD 91


>gi|225874303|ref|YP_002755762.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225791292|gb|ACO31382.1| DNA gyrase, B subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 870

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE 67
          + E+++NS+D   A  ++R+E  I     +   + D+G G+  +E
Sbjct: 57 VYEVVDNSVDEALAGYATRIEVTIHVD--NSITVVDDGRGIPVDE 99


>gi|217970016|ref|YP_002355250.1| histidine kinase [Thauera sp. MZ1T]
 gi|217507343|gb|ACK54354.1| histidine kinase [Thauera sp. MZ1T]
          Length = 689

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 15  AAGEI-I----ERPSIAIKELIENSLDAESS--RVETVIAGG--GKSFFQITDNGFGMTS 65
           AAG + +    +R    I  +++N+LDA +   +V   +A G  G++   + D+G GM+ 
Sbjct: 562 AAGPVEVSAHPQRLERIIGHVVQNALDATAQDGKVVLSLAAGKDGRANVVVEDDGCGMSP 621

Query: 66  E 66
           E
Sbjct: 622 E 622


>gi|28569045|gb|AAO47226.1|AF205853_2 DNA gyrase subunit B [Streptomyces rishiriensis]
          Length = 702

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A +   +E ++   G    ++TDNG G+  +
Sbjct: 55 EIIDNSVDEALAGACDHIEVILHDDG--SVEVTDNGRGIPVD 94


>gi|33594717|ref|NP_882361.1| putative sensor kinase protein [Bordetella pertussis Tohama I]
 gi|33598903|ref|NP_886546.1| putative sensor kinase protein [Bordetella parapertussis 12822]
 gi|33564793|emb|CAE44121.1| putative sensor kinase protein [Bordetella pertussis Tohama I]
 gi|33575033|emb|CAE39699.1| putative sensor kinase protein [Bordetella parapertussis]
 gi|332384128|gb|AEE68975.1| putative sensor kinase protein [Bordetella pertussis CS]
          Length = 487

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 30  LIENSL--DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++   A  S V   + A GG ++  + DNG GM++E+I  A  R 
Sbjct: 375 LVDNAIRYTARGSEVTVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRF 423


>gi|33603982|ref|NP_891542.1| putative sensor kinase protein [Bordetella bronchiseptica RB50]
 gi|33568958|emb|CAE35372.1| putative sensor kinase protein [Bordetella bronchiseptica RB50]
          Length = 471

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 30  LIENSL--DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++   A  S V   + A GG ++  + DNG GM++E+I  A  R 
Sbjct: 359 LVDNAIRYTARGSEVTVKVHAEGGHAWLVVEDNGPGMSAEDIARASVRF 407


>gi|86130994|ref|ZP_01049593.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
 gi|85818405|gb|EAQ39565.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 26  AIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  L++N++ A  +    ++   +          +TDNG G++ + +PM  +   T+K
Sbjct: 384 VVTNLVKNAVQATKTTEDPKILVEVNDLDAQVEITVTDNGTGISEDNLPMIFEPKFTTK 442


>gi|307942170|ref|ZP_07657521.1| periplasmic sensor Signal transduction histidine kinase [Roseibium
           sp. TrichSKD4]
 gi|307774456|gb|EFO33666.1| periplasmic sensor Signal transduction histidine kinase [Roseibium
           sp. TrichSKD4]
          Length = 515

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 19  IIERP---SIAIKELIENSL-------DAESSRVETVIAGG--GKSFFQITDNGFGMTSE 66
           ++  P   S  +  L+EN++       DA    V         G    +  D+G G++  
Sbjct: 393 VVSYPGAISQIVTNLVENAVKHGYEGQDAG--EVTVSSRKNHDGAIIIECNDDGCGISDG 450

Query: 67  EIPMAVQRHCTSKI 80
            +    +   T+K 
Sbjct: 451 NLKRLFEPFFTTKF 464


>gi|297622932|ref|YP_003704366.1| integral membrane sensor signal transduction histidine kinase
           [Truepera radiovictrix DSM 17093]
 gi|297164112|gb|ADI13823.1| integral membrane sensor signal transduction histidine kinase
           [Truepera radiovictrix DSM 17093]
          Length = 443

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 4   RKLS-EKIINQIA------------AGEII---ERPSIAIKELIENSLDA-ESSRVETVI 46
           + L    ++ +IA            A E+    ER +   + L+ N++ A  +  V   +
Sbjct: 284 QVLDLSAVVRRIAREYPGVALGALPAAEVAGSPERLAQLTRNLVRNAVQAAGAEGVTLEL 343

Query: 47  AGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
             G       + D G G+  EE+P   +R  T
Sbjct: 344 TAGADEVVLTVADRGPGVPPEELPHLFERFYT 375


>gi|291320111|ref|YP_003515369.1| topoisomerase IV subunit B [Mycoplasma agalactiae]
 gi|290752440|emb|CBH40411.1| Topoisomerase IV subunit B [Mycoplasma agalactiae]
          Length = 641

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+++NS+D   A  ++ +  ++   G     ++DNG G+           + +   + H 
Sbjct: 45  EIVDNSIDEALAGEANEIIVILKKDG--SVIVSDNGRGIPVGKTPSGKSAVELVFTELHA 102

Query: 77  TSKISD 82
             K ++
Sbjct: 103 GGKFNE 108


>gi|225551164|ref|ZP_03772110.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
          str. ATCC 27618]
 gi|225378979|gb|EEH01344.1| DNA topoisomerase IV, B subunit [Ureaplasma urealyticum serovar 8
          str. ATCC 27618]
          Length = 270

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D    A +  +  V+     +   I D+G G+  +
Sbjct: 41 EIVDNSIDEVMNANAKNISVVLHED--NSISILDDGRGIPVD 80


>gi|167031027|ref|YP_001666258.1| DNA gyrase subunit B [Pseudomonas putida GB-1]
 gi|166857515|gb|ABY95922.1| DNA gyrase, B subunit [Pseudomonas putida GB-1]
          Length = 806

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDITVIIHTD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   V
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLVLTVRRSG--KIWEQTYVHGVPQAPMAV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T                  K+     +++   IR ++     V       +S + 
Sbjct: 159 VGDSETT----GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N+   +         G      +N         F 
Sbjct: 215 E--FFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|58617165|ref|YP_196364.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel]
 gi|58416777|emb|CAI27890.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Gardel]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A   ++++ +I   G     + DNG G+  +
Sbjct: 39 VYEVIDNSIDEALAGFCNKIDIIIQNDG--SVSVIDNGRGIPVD 80


>gi|296163367|ref|ZP_06846125.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gi|295886399|gb|EFG66259.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 808

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        AI EL+ NS+DA ++ V   +   G   F+ +D+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SIGKAIIELLMNSVDARATAVRLSMTKEG---FECSDDGNG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            + E++     R  T
Sbjct: 60 FASREDVIRYFGRFGT 75


>gi|26989125|ref|NP_744550.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida KT2440]
 gi|24983959|gb|AAN68014.1|AE016434_5 sensor histidine kinase, putative [Pseudomonas putida KT2440]
          Length = 428

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ ++     G  +  ++ DNG G+  +E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAELQVS-REGSTTIIRVLDNGPGIPVDELDEVLKPFY 380


>gi|57239156|ref|YP_180292.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|58579107|ref|YP_197319.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|57161235|emb|CAH58151.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
 gi|58417733|emb|CAI26937.1| DNA gyrase subunit B [Ehrlichia ruminantium str. Welgevonden]
          Length = 798

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A   ++++ +I   G     + DNG G+  +
Sbjct: 39 VYEVIDNSIDEALAGFCNKIDIIIQNDG--SVSVIDNGRGIPVD 80


>gi|332641361|gb|AEE74882.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 772

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 84/258 (32%), Gaps = 43/258 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+++ V+         I+DNG G+   ++      H  T K  
Sbjct: 133 VYEILDNAIDEAQAGFASKIDVVLHSD--DSVSISDNGRGI-PTDL------HPATGK-- 181

Query: 82  DDFSNIHTF------------------GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA 122
                + T                   G  G  L  + A+S  L ++ R        + +
Sbjct: 182 SSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYS 241

Query: 123 ISGEKISSVRPVAMN--PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +    V      GT       +   P +  F  + Q + N I   IR +A   P
Sbjct: 242 RGKPVTTLTCHVLPPESRGTQGTCIRFW---PDKEVFTTAIQFDHNTIAGRIRELAFLNP 298

Query: 181 KVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           KV+ +      +  R   +     G   E +S +  +    + V    K           
Sbjct: 299 KVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEIN-GSTVDVS 357

Query: 239 IPTFNRGNANQFYVFING 256
           +   +   ++    + N 
Sbjct: 358 LQWCSDAYSDTMLGYANS 375


>gi|237798671|ref|ZP_04587132.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021524|gb|EGI01581.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 586

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA     S R+E  I      +    ++D+G G+  E +       
Sbjct: 477 RLEQVLINLLRNALDAMRNRPSRRLEVRIDATDHNQWRLSVSDSGSGIAPENLANIFDPF 536

Query: 76  CTSK 79
            T+K
Sbjct: 537 FTTK 540


>gi|220923231|ref|YP_002498533.1| DNA topoisomerase IV subunit B [Methylobacterium nodulans ORS 2060]
 gi|219947838|gb|ACL58230.1| DNA topoisomerase IV, B subunit [Methylobacterium nodulans ORS
           2060]
          Length = 684

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+N++D   A  +S +E  +A GG     +TDNG G+  +
Sbjct: 79  EVIDNAMDEAVAGHASFIEVELAEGGI--LTVTDNGRGIPVD 118


>gi|104779320|ref|YP_605818.1| DNA gyrase subunit B [Pseudomonas entomophila L48]
 gi|95108307|emb|CAK13001.1| DNA gyrase, subunit B [Pseudomonas entomophila L48]
          Length = 806

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDITVIIHTD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   V
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLVLTVRRSG--KIWEQTYVHGVPQAPMAV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T                  K+     +++   IR ++     V       +S + 
Sbjct: 159 VGESETT----GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N+   +         G      +N         F 
Sbjct: 215 E--FFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|84389419|ref|ZP_00991225.1| hypothetical protein V12B01_19871 [Vibrio splendidus 12B01]
 gi|84376934|gb|EAP93807.1| hypothetical protein V12B01_19871 [Vibrio splendidus 12B01]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 22  RPSIAIKELIENSLDAESSRVE--------TVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           R    +  LI N+LDA    +E                +    + DNG G+  E+IP   
Sbjct: 546 RLEQVLVNLISNALDA----IEHKEQPQLSIATQELSNTMQILVKDNGLGIPEEDIPYLF 601

Query: 73  QRHCTSK 79
               +SK
Sbjct: 602 DPFYSSK 608


>gi|288961887|ref|YP_003452197.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288914167|dbj|BAI75653.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 536

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 21  ERPSIAIKELIENSLD-AESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           E     +  LIEN+   A +  RV   +   G+    ++ D+G G++            T
Sbjct: 429 ESLESVLANLIENARHHAGADARVTVTLRAEGERAILRVADDGPGISPANADRVFVPFFT 488


>gi|72162533|ref|YP_290190.1| DNA topoisomerase IV subunit B [Thermobifida fusca YX]
 gi|71916265|gb|AAZ56167.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobifida fusca YX]
          Length = 702

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A   +R+E V+   G    ++ DNG G+  +
Sbjct: 51 EIIDNSVDEALAGYCTRIEVVLHADG--SVEVRDNGRGIPVD 90


>gi|76801589|ref|YP_326597.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76557454|emb|CAI49032.1| signal-transducing histidine kinase; PAS/PAC domain protein
           [Natronomonas pharaonis DSM 2160]
          Length = 876

 Score = 46.2 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 17/68 (25%)

Query: 25  IAIKELIENSL---D---AESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQR--- 74
             ++EL+EN++   D   AE++ V   +   G     +  D+G G+   +  +       
Sbjct: 761 QVVEELVENAVVHNDAPPAEAT-VRLTLEQDGNELVLVIEDDGPGIP--DTELVFTEEGT 817

Query: 75  ----HCTS 78
               H +S
Sbjct: 818 EEPLHHSS 825


>gi|317406060|gb|EFV86325.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           L++N+ DA      +  +       G ++   ++DNG G+ ++ +P       T
Sbjct: 143 LVQNAADALAGASGARHIALEGRADGATYVFSVSDNGPGIAADALPRLFTPFYT 196


>gi|94983843|gb|ABF50626.1| DNA topoisomerase IV subunit B [Spiroplasma floricola]
 gi|94983845|gb|ABF50627.1| DNA topoisomerase IV subunit B [Spiroplasma floricola]
          Length = 555

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I   G     + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGVCTEINVSIEKDG--SVTVKDNGRGVP 51


>gi|332703597|ref|ZP_08423685.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553746|gb|EGJ50790.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 576

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 31  IENSLDAESS--RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           + N+L A S   R++      G++    I DNG GM  E +    +   T+K
Sbjct: 476 LNNALAAVSDKGRIQISSKDSGQNVLVSIEDNGCGMPKETLEHIFEPFFTTK 527


>gi|281422343|ref|ZP_06253342.1| putative DNA topoisomerase IV, B subunit [Prevotella copri DSM
           18205]
 gi|281403574|gb|EFB34254.1| putative DNA topoisomerase IV, B subunit [Prevotella copri DSM
           18205]
          Length = 669

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 78/285 (27%), Gaps = 39/285 (13%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A + R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 69  LKEVVDNSIDEFKMGAGA-RLEIDIEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 125

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S         +      K  ++   
Sbjct: 126 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVKSYRDGKVRHLKFEKGILKSDTMEDT 179

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               GT +                K+     + +  ++R           T         
Sbjct: 180 EDENGTFIFFE-------PDNTLFKNYSFHDDFVETMLRNYTYLN--TGLTIMHNGRRIL 230

Query: 195 ------KMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGN 246
                  +   +        I  + GED            +     + G          +
Sbjct: 231 SRHGLQDLLSDNMTNEGLYDIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQS 290

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEI 290
           A + ++    +    K+  + IR      I +    PV     +I
Sbjct: 291 AFKEHIAKTIKEFYGKYEYADIRNGLVAAIAINVEEPVFESQTKI 335


>gi|148767476|gb|ABR10712.1| DctB [Mesorhizobium sp. CJ3]
          Length = 606

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+LDA     + R+E  +     +    + DNG G+  E          
Sbjct: 502 RLEQILVNLLQNALDAMKDQSAPRIEIELAERDDRVLISVRDNGPGLGQEAAGNLFMPFQ 561

Query: 77  TSK 79
           T+K
Sbjct: 562 TTK 564


>gi|91773184|ref|YP_565876.1| DNA topoisomerase VI subunit B [Methanococcoides burtonii DSM
          6242]
 gi|121689247|sp|Q12WQ0|TOP6B_METBU RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|91712199|gb|ABE52126.1| DNA topoisomerase, type VI subunit B [Methanococcoides burtonii
          DSM 6242]
          Length = 622

 Score = 46.2 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 27 IKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQR 74
          +KE ++NSLDA  E+     +   I   GK      + DNG G+  E+IP    +
Sbjct: 42 VKEAVDNSLDACEEAEILPDILLHIERVGKDNVSVIVEDNGPGIVKEQIPKVFAK 96


>gi|253581073|ref|ZP_04858333.1| sensor histidine kinase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847609|gb|EES75579.1| sensor histidine kinase [Ruminococcus sp. 5_1_39BFAA]
          Length = 383

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 8   EKIINQIAAGEIIERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQIT--DNGFG 62
           E  +  IA GE I R    I  +I N++   D     ++  I   G  F Q+   DNG G
Sbjct: 258 EDNVQVIADGEQIRR---VIHNIISNAIKYMDKPKGIIQIRIKDVG-DFIQVEIEDNGKG 313

Query: 63  MTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
           + ++++P    R        D S   + G  G  L SI
Sbjct: 314 IAAKDLPSIFDRFY----RTDVSRNSSKGGSGIGL-SI 346


>gi|148654052|ref|YP_001281145.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1]
 gi|148573136|gb|ABQ95195.1| DNA topoisomerase IV subunit B [Psychrobacter sp. PRwf-1]
          Length = 629

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  ++  +   G     + D+G GM ++
Sbjct: 29 TRPNHLAQEVIDNSVDEALAGHAKTIKVQLHNDG--SLSVEDDGRGMPTD 76


>gi|329296288|ref|ZP_08253624.1| sensory histidine kinase DcuS [Plautia stali symbiont]
          Length = 112

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 17 GEIIERPSIAIKELIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMA 71
          G +I      +  L+EN+LDA S +    +  ++    G    +++D+G G+  + +   
Sbjct: 1  GAVIT----VVGNLVENALDAMSEQTEGEIHVMLHYQNGWLTCEVSDDGPGIEPQHLATV 56

Query: 72 VQRHCTSK 79
            +  ++K
Sbjct: 57 FDKGFSTK 64


>gi|317504159|ref|ZP_07962158.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
          DSM 15606]
 gi|315664735|gb|EFV04403.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
          DSM 15606]
          Length = 656

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A   + VE  +   G     + DNG G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCTDVEITLNEDG--SVTVEDNGRGIPVDEHKKL 91


>gi|295111747|emb|CBL28497.1| DNA gyrase subunit B [Synergistetes bacterium SGP1]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R++  I         + D+G G+ ++
Sbjct: 49 VNEVVDNSIDEAMAGFCTRIDVTIHKD--ESVTVQDDGRGIPTD 90


>gi|281424989|ref|ZP_06255902.1| DNA gyrase, B subunit [Prevotella oris F0302]
 gi|299142183|ref|ZP_07035316.1| DNA gyrase, B subunit [Prevotella oris C735]
 gi|281400833|gb|EFB31664.1| DNA gyrase, B subunit [Prevotella oris F0302]
 gi|298576272|gb|EFI48145.1| DNA gyrase, B subunit [Prevotella oris C735]
          Length = 656

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A   + VE  +   G     + DNG G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCTDVEITLNEDG--SVTVEDNGRGIPVDEHKKL 91


>gi|224537369|ref|ZP_03677908.1| hypothetical protein BACCELL_02247 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520994|gb|EEF90099.1| hypothetical protein BACCELL_02247 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 623

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 70/256 (27%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 20  IRHLDDMEHIRVRSGMYIGRLGDGTQNDDGIYVLLKEVMDNSIDEFKMGAG-RRIEINIE 78

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 79  DN--LRVSVRDYGRGIPQGKLIEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 134

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S        A       +           GT +                 +
Sbjct: 135 ----RFEVRSYREGKVRIAIFEKGNLQSDVTESCNEESGTYIFFE-------PDSTLFLN 183

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
              + N +  ++R        +S          +     +   +        I  + GED
Sbjct: 184 YSFQANFVETLLRNYTYLNTGLSIIYNGQRIISRHGLEDLLNDNMTAQGLYNIIHLKGED 243

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 244 IEIAFTHTNQYGEEYY 259


>gi|194339071|gb|ACF49451.1| GyrB [Amycolatopsis fastidiosa]
          Length = 465

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 17/74 (22%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT----SEEIPMAVQ-----R 74
          E+++NS+D   A  ++RVE  + A GG    ++ D+G G+      EE   A++      
Sbjct: 20 EVVDNSVDEAMAGHATRVEVTLLADGG---VRVDDDGRGIPVDEHPEEKRSALEVVMTVL 76

Query: 75 HCTSKISDDFSNIH 88
          H   K   D   + 
Sbjct: 77 HAGGKFDSDSYAVS 90


>gi|82798482|gb|ABB91904.1| DNA gyrase subunit B [Acholeplasma cavigenitalium]
          Length = 588

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I  G     +++D+G G+  +
Sbjct: 23 EIVDNSIDEALAGYAKEILLEILPG--EIIRVSDDGRGIPVD 62


>gi|302381375|ref|YP_003817198.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192003|gb|ADK99574.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 546

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTS 78
             ++ D+G G+  E +    QR  TS
Sbjct: 464 SIRVDDDGPGIPPENLETVFQRFYTS 489


>gi|108796987|ref|YP_637184.1| DNA gyrase subunit B [Mycobacterium sp. MCS]
 gi|119866071|ref|YP_936023.1| DNA gyrase subunit B [Mycobacterium sp. KMS]
 gi|126432619|ref|YP_001068310.1| DNA gyrase subunit B [Mycobacterium sp. JLS]
 gi|108767406|gb|ABG06128.1| DNA gyrase subunit B [Mycobacterium sp. MCS]
 gi|119692160|gb|ABL89233.1| DNA gyrase subunit B [Mycobacterium sp. KMS]
 gi|126232419|gb|ABN95819.1| DNA gyrase subunit B [Mycobacterium sp. JLS]
          Length = 675

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++N++D   A  +++VE  I   GG    Q+TD+G G+ 
Sbjct: 48 EVVDNAVDEAMAGFATKVEVRILENGG---VQVTDDGRGIP 85


>gi|319406453|emb|CBI80093.1| two-component sensor kinase BatS [Bartonella sp. 1-1C]
          Length = 555

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 22  RPSIAIKELIENSLDAES------SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
           R    I  LIEN   A S       ++   +     +    + DNG G+ SE I    +R
Sbjct: 439 RLGQVISNLIEN---ARSFVPRKNGKICITMKNNASTLILTVEDNGPGIRSENIERIFER 495

Query: 75  HCT 77
             T
Sbjct: 496 FYT 498


>gi|228471275|ref|ZP_04056081.1| DNA mismatch repair enzyme [Porphyromonas uenonis 60-3]
 gi|228306917|gb|EEK16015.1| DNA mismatch repair enzyme [Porphyromonas uenonis 60-3]
          Length = 561

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E I N+ DA++ RV   I    KS   I D+G GMTS++      +   SK
Sbjct: 31 EAISNAWDADAKRVSITIDRD-KSLLIIRDDGIGMTSKDFQDKFLKIGYSK 80


>gi|189460100|ref|ZP_03008885.1| hypothetical protein BACCOP_00736 [Bacteroides coprocola DSM 17136]
 gi|189433183|gb|EDV02168.1| hypothetical protein BACCOP_00736 [Bacteroides coprocola DSM 17136]
          Length = 990

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 17/103 (16%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISD- 82
            AI ELI+N+ DA + + +        +   + D+G GMT EE         T SK+++ 
Sbjct: 24  TAINELIKNAHDAYADKFDIDFLRCN-NLLVLRDDGLGMTKEEFETRWLTLGTESKLANK 82

Query: 83  -------DFSNIHT--FGFRGE---ALPSIGAVSHLTLMSRPP 113
                  D S       G +G    A+ SIG  S + ++S+  
Sbjct: 83  KSSLPPIDISKPRRPIMGEKGIGRLAIASIG--SQVLIVSKAK 123


>gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 599

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 26  AIKELIENSL-----DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            ++ L++N++     D+   R+  +          ++ DNG G+  +++    +R  
Sbjct: 485 VVRNLLDNAIKYVADDSG--RIRIIAFPANDMVRLEVEDNGAGIPQKDLGRIFERFY 539


>gi|315023564|gb|EFT36568.1| nitrogen regulation protein ntrY [Riemerella anatipestifer RA-YM]
 gi|325336059|gb|ADZ12333.1| Signal transduction histidine kinase [Riemerella anatipestifer
           RA-GD]
          Length = 484

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++ AES      +   +        F + DNG GM+ E++    + + TSK
Sbjct: 388 LITNAIQAESENRKLIINIDLEERYNYIRFIVEDNGEGMSEEKMAKIFEPNFTSK 442


>gi|313206495|ref|YP_004045672.1| integral membrane sensor signal transduction histidine kinase
           [Riemerella anatipestifer DSM 15868]
 gi|312445811|gb|ADQ82166.1| integral membrane sensor signal transduction histidine kinase
           [Riemerella anatipestifer DSM 15868]
          Length = 484

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++ AES      +   +        F + DNG GM+ E++    + + TSK
Sbjct: 388 LITNAIQAESENRKLIINIDLEERYNYIRFIVEDNGEGMSEEKMAKIFEPNFTSK 442


>gi|310779030|ref|YP_003967363.1| Heat shock protein Hsp90 [Ilyobacter polytropus DSM 2926]
 gi|309748353|gb|ADO83015.1| Heat shock protein Hsp90 [Ilyobacter polytropus DSM 2926]
          Length = 629

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 62/252 (24%)

Query: 27  IKELIENSLDAESSRVE----TVIAGGGK-----------------SFFQITDNGFGMTS 65
           ++EL+ N+ DA    ++      I   G                     +I+DNG GM  
Sbjct: 31  LRELVSNASDA----IDKLKFLSITDKGLLEGDQDFKIEIAASKDKKVIKISDNGIGMNH 86

Query: 66  EEI-----------PMAVQRHCT-SKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMS 110
           +E+             A  +    SK   D   I  F  GF      S   V+  +T+ +
Sbjct: 87  DELVANLGTIAKSGSKAFMKAMKESKKQSDLEIIGQFGVGF-----YSAFMVAEKITVAT 141

Query: 111 RPPQNNTGAQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           R        +    G+    +  +     GT + +      I         E +E   I 
Sbjct: 142 RRAGEEKAYKWESDGKNTFVIDEIKKEKRGTEITLH-----IREDKENPNDEYLEEYKIR 196

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
           ++I++ +                   +  +  +G+  E+I + +            + + 
Sbjct: 197 ELIKKYSDY-----------VRYPINLEVEKKDGDKTEKIMETLNSMIPIWKKNKTDVTE 245

Query: 230 EITLQGYTGIPT 241
           E   + Y     
Sbjct: 246 EEYNEFYISKFH 257


>gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 595

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   D   + V+ +    GG     + D+G G+  E++P   +R  
Sbjct: 483 DRIEQVLTNLIDNAIRHTDQNGT-VKIIAEQNGGGVTIHVQDSGTGIPEEDLPFVFERFY 541


>gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 595

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   D   + V+ +    GG     + D+G G+  E++P   +R  
Sbjct: 483 DRIEQVLTNLIDNAIRHTDQNGT-VKIIAEQNGGGVTIHVQDSGTGIPEEDLPFVFERFY 541


>gi|229100336|ref|ZP_04231209.1| hypothetical protein bcere0020_55230 [Bacillus cereus Rock3-29]
 gi|228683092|gb|EEL37097.1| hypothetical protein bcere0020_55230 [Bacillus cereus Rock3-29]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 30  LIENSL---DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+ N+L   D + + ++  I    G +   I DNG G+   ++P    R+
Sbjct: 349 LLNNALIHTDVK-TLIQVRIKQTSGYTIVTIEDNGDGINKNDLPHIFDRY 397


>gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 758

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D    +V  V+    K   ++ DNG G+  E++    +R  
Sbjct: 326 LVDNAIKYTQDNGIVQV-VVLKDEEKIVIKVIDNGVGIPKEDVERIFERFY 375


>gi|194014511|ref|ZP_03053128.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
 gi|194013537|gb|EDW23102.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI N+L   DA+   +   +     +   I DNG G+   E+     R+ 
Sbjct: 371 LILNALVHNDAD-VNIIVQLEQKENTHITIQDNGKGIEEAELEKVFDRYY 419


>gi|182677812|ref|YP_001831958.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC
          9039]
 gi|182633695|gb|ACB94469.1| DNA gyrase, B subunit [Beijerinckia indica subsp. indica ATCC
          9039]
          Length = 817

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++RV   +   G     +TD+G G+ ++
Sbjct: 53 EVVDNAIDEALAGHATRVTVTLNADG--SVTVTDDGRGIPTD 92


>gi|167625558|ref|YP_001675852.1| DNA topoisomerase IV subunit B [Shewanella halifaxensis HAW-EB4]
 gi|167355580|gb|ABZ78193.1| DNA topoisomerase IV, B subunit [Shewanella halifaxensis HAW-EB4]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 31/197 (15%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +SR++ ++     +  ++TD+G GM      EE    + 
Sbjct: 34  RPNHLGQEVIDNSVDEALAGHASRIDVILHAD--NSLEVTDDGRGMPVDIHPEEGIPGVE 91

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIA 122
           + + + H   K S+      + G  G       AL S      + +  R           
Sbjct: 92  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSS-----RVEITVRRNAEVYEMAFE 145

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +                     +       ++  S     + +T +++  A+  P +
Sbjct: 146 HGEKVEDLHVTGTCGRRNTGTSVHFW----PDPSYFDSGNFSISKLTYLLKAKAVLCPGL 201

Query: 183 SFTFSTIKSNRYKMNFQ 199
              F   ++N  +  F 
Sbjct: 202 RIKFVNKQTNETQEWFY 218


>gi|84683525|ref|ZP_01011428.1| DNA topoisomerase IV, B subunit [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84668268|gb|EAQ14735.1| DNA topoisomerase IV, B subunit [Rhodobacterales bacterium
          HTCC2654]
          Length = 650

 Score = 45.8 bits (107), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +   G     +TDNG G+  +
Sbjct: 46 VAEILDNSMDEAVAGHATRIEVELH--GDYSVTVTDNGRGIPID 87


>gi|330830289|ref|YP_004393241.1| two-component system flagellar sensor histidine kinase FlrB
           [Aeromonas veronii B565]
 gi|328805425|gb|AEB50624.1| Two-component system flagellar sensor histidine kinase FlrB
           [Aeromonas veronii B565]
          Length = 344

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            + AI  LI N+  A ++ +    +  G +   ++ DNG G+ S ++    +   T
Sbjct: 236 LAGAINNLIANAQQAGATSLLVSAVRSGARVEVRVIDNGKGIPSHQLGQVFEPFFT 291


>gi|328544898|ref|YP_004305007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414640|gb|ADZ71703.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 481

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 30  LIENSLDAESS--RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           LIEN+L   S+  RVE  +   G G S F + D G G+  E +P   +R        D +
Sbjct: 357 LIENALKYGSTGRRVEVALRPEGDGASVFSVRDFGEGIAPEHLPRLTERFY----RVDVA 412

Query: 86  NIHTFGFRGEALPSIGAV-----SHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
           +  T    G  L  +  +     + L + SRP      +    S  K+S    +
Sbjct: 413 SSRTMKGTGLGLAIVKHILTRHRARLEIDSRPGAGACFSVRFQSPGKLSRNGNM 466


>gi|301335659|ref|ZP_07223903.1| DNA gyrase subunit B [Chlamydia trachomatis L2tet1]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
 gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D    +V  V+    K   ++ DNG G+  E++    +R  
Sbjct: 326 LVDNAIKYTQDNGIVQV-VVLKDEEKIVIKVIDNGVGIPKEDVERIFERFY 375


>gi|270265138|ref|ZP_06193401.1| hypothetical protein SOD_k01770 [Serratia odorifera 4Rx13]
 gi|270041072|gb|EFA14173.1| hypothetical protein SOD_k01770 [Serratia odorifera 4Rx13]
          Length = 590

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 29 ELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIP 69
          ELI N+ DA++  V    +  G   F  + D+G GM S +I 
Sbjct: 30 ELISNAYDADAESVTLEFLEIGSNKFITVKDDGTGMNSTDIQ 71


>gi|258625637|ref|ZP_05720518.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258582092|gb|EEW06960.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 220

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 2/117 (1%)

Query: 385 DDPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMR 444
           +    S  +    ++E    +LG A   +   Y++  ++ G V++  H A    +  +  
Sbjct: 18  NSSPVSTSSLQTTKTEIVIEKLGKAIQVVEGEYLLMSSSQGCVLISLHQAQLVKL--RGL 75

Query: 445 QDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIP 501
            +     + +Q LL P  + L E E  +   H E LH+LGI+ +    ++I +  +P
Sbjct: 76  LNAQHGALKAQPLLVPLSLKLSESEWQVAQTHLESLHQLGIELKTRANHSIMVMAVP 132


>gi|255506765|ref|ZP_05382404.1| DNA gyrase subunit B [Chlamydia trachomatis D(s)2923]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|255348547|ref|ZP_05380554.1| DNA gyrase subunit B [Chlamydia trachomatis 70]
 gi|255503087|ref|ZP_05381477.1| DNA gyrase subunit B [Chlamydia trachomatis 70s]
 gi|289525228|emb|CBJ14704.1| DNA gyrase subunit B [Chlamydia trachomatis Sweden2]
 gi|296434776|gb|ADH16954.1| DNA gyrase subunit B [Chlamydia trachomatis E/150]
 gi|296438496|gb|ADH20649.1| DNA gyrase subunit B [Chlamydia trachomatis E/11023]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|237802614|ref|YP_002887808.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
 gi|231273848|emb|CAX10638.1| DNA gyrase subunit B [Chlamydia trachomatis B/Jali20/OT]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|166154400|ref|YP_001654518.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|166155275|ref|YP_001653530.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930388|emb|CAP03881.1| DNA gyrase subunit B [Chlamydia trachomatis 434/Bu]
 gi|165931263|emb|CAP06835.1| DNA gyrase subunit B [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|170719191|ref|YP_001746879.1| DNA gyrase subunit B [Pseudomonas putida W619]
 gi|169757194|gb|ACA70510.1| DNA gyrase, B subunit [Pseudomonas putida W619]
          Length = 806

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDITVIIHTD--ESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +         +   V
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLVLTVRRSG--KIWEQTYVHGVPQAPMAV 158

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T                  K+     +++   IR ++     V       +S + 
Sbjct: 159 VGESETT----GTHIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKE 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N+   +         G      +N         F 
Sbjct: 215 E--FFKYEGGLRAFVEYLNTNKTPVNSQVFHFNVQREDGVGVEVALQWNDSFNENLLCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|3510605|gb|AAC33551.1| gyrase subunit B [Chlamydia trachomatis]
          Length = 796

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 27 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 73


>gi|76788912|ref|YP_327998.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|237804536|ref|YP_002888690.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167442|gb|AAX50450.1| DNA gyrase subunit B [Chlamydia trachomatis A/HAR-13]
 gi|231272836|emb|CAX09745.1| DNA gyrase subunit B [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|15604910|ref|NP_219694.1| DNA gyrase subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|255310990|ref|ZP_05353560.1| DNA gyrase subunit B [Chlamydia trachomatis 6276]
 gi|255317291|ref|ZP_05358537.1| DNA gyrase subunit B [Chlamydia trachomatis 6276s]
 gi|6647525|sp|O84193|GYRB_CHLTR RecName: Full=DNA gyrase subunit B
 gi|3328595|gb|AAC67782.1| DNA Gyrase Subunit B [Chlamydia trachomatis D/UW-3/CX]
 gi|296435705|gb|ADH17879.1| DNA gyrase subunit B [Chlamydia trachomatis G/9768]
 gi|296436629|gb|ADH18799.1| DNA gyrase subunit B [Chlamydia trachomatis G/11222]
 gi|296437565|gb|ADH19726.1| DNA gyrase subunit B [Chlamydia trachomatis G/11074]
 gi|297140064|gb|ADH96822.1| DNA gyrase subunit B [Chlamydia trachomatis G/9301]
 gi|297748320|gb|ADI50866.1| DNA gyrase subunit B [Chlamydia trachomatis D-EC]
 gi|297749200|gb|ADI51878.1| DNA gyrase subunit B [Chlamydia trachomatis D-LC]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          +      + E+++NS+D   A   + V   I   GG     I+DNG G+ 
Sbjct: 35 VTGLHHLVYEVVDNSIDEAMAGFCTEVVVRILEDGG---ISISDNGRGIP 81


>gi|328543970|ref|YP_004304079.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [polymorphum gilvum SL003B-26A1]
 gi|326413714|gb|ADZ70777.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Polymorphum gilvum SL003B-26A1]
          Length = 703

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  ++ ++  +   G  +  +TDNG G+  +
Sbjct: 100 EVVDNSMDEAVAGHATWIDVALDADG--YLTVTDNGRGIPVD 139


>gi|294054231|ref|YP_003547889.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613564|gb|ADE53719.1| DNA gyrase, B subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 846

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 21 ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ER     + E+++NS+D   A   S++   I   G     I D+G G+  +
Sbjct: 51 ERGLHHCVFEIVDNSIDEALAGHCSQITVSIHNDG--SCSIEDDGRGIPVD 99


>gi|291446126|ref|ZP_06585516.1| gyrase B [Streptomyces roseosporus NRRL 15998]
 gi|291349073|gb|EFE75977.1| gyrase B [Streptomyces roseosporus NRRL 15998]
          Length = 682

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 60 VQEVVDNSVDEAMAGHADTIDVTILPDGG---VRVIDNGRGIP 99


>gi|269115151|ref|YP_003302914.1| DNA gyrase subunit B [Mycoplasma hominis]
 gi|290457646|sp|P43053|GYRB_MYCHP RecName: Full=DNA gyrase subunit B
 gi|268322776|emb|CAX37511.1| DNA gyrase subunit B [Mycoplasma hominis ATCC 23114]
          Length = 648

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  +     +  ++ DNG GM 
Sbjct: 46 EIVDNSVDEAMAGFATEIKIKLYPN--NVIEVEDNGRGMP 83


>gi|302520521|ref|ZP_07272863.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
 gi|318057387|ref|ZP_07976110.1| DNA gyrase subunit B [Streptomyces sp. SA3_actG]
 gi|318079451|ref|ZP_07986783.1| DNA gyrase subunit B [Streptomyces sp. SA3_actF]
 gi|302429416|gb|EFL01232.1| DNA gyrase, B subunit [Streptomyces sp. SPB78]
          Length = 718

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 96  VQEVVDNSVDEALAGHADTIDVTILPDGG---VRVIDNGRGIP 135


>gi|239942665|ref|ZP_04694602.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 15998]
 gi|239989124|ref|ZP_04709788.1| DNA gyrase subunit B [Streptomyces roseosporus NRRL 11379]
          Length = 690

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 68  VQEVVDNSVDEAMAGHADTIDVTILPDGG---VRVIDNGRGIP 107


>gi|239825589|ref|YP_002948213.1| DNA gyrase subunit B [Geobacillus sp. WCH70]
 gi|239805882|gb|ACS22947.1| DNA gyrase, B subunit [Geobacillus sp. WCH70]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I         ITDNG G+  +
Sbjct: 47 EIVDNSIDEALAGYCTEINVTIEKDNI--IAITDNGRGIPVD 86


>gi|56459116|ref|YP_154397.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR]
 gi|56178126|gb|AAV80848.1| DNA gyrase subunit B [Idiomarina loihiensis L2TR]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 72/247 (29%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I   G     + D+G G+      EE   A Q      H
Sbjct: 43  EVVDNSIDEALAGHCSEIMVTIHSDG--SVSVKDDGRGIPVDIHEEEGVSAAQVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +      +  S    
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGISVVNALSEKLQLTIRRQGQV--YEQTYHMGEPDSDVKP 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T       +             +   +++   +R ++     V       + +R 
Sbjct: 158 VGDTDTTGTELRFW----PSHETFTDTEFHYDILAKRLRELSFLNSGVGIRLRDERDDRE 213

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
            +      G     ++ +       +       +      G      +N       Y F 
Sbjct: 214 DLFKY--EGGIAAFVNYLNKNKTPIHEKAFYFTTQREDGIGVEVSMQWNDSFQENIYCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|20094357|ref|NP_614204.1| DNA topoisomerase VI subunit B [Methanopyrus kandleri AV19]
 gi|19887419|gb|AAM02134.1| DNA topoisomerase VI, subunit B [Methanopyrus kandleri AV19]
          Length = 475

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 31/181 (17%)

Query: 27  IKELIENSLDA-ESSRV--ETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTS 78
           + EL+ NS+DA   +R+  +  +            ++ DNG G+  E +P    +     
Sbjct: 35  VHELVTNSMDACHLNRIRPDVRVVIRREEENVYRVRVIDNGPGIPPERVPKVFGKFLAGD 94

Query: 79  KISDDFSNIHTFGFR-----GEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR 132
           K  D    I + G +     G AL ++      + +++                  +   
Sbjct: 95  KF-DPVYGIQSMGQQGIGAAGVALYALITTGEPVRVLTSTDGRTAHYFEVKPDPSTNEPV 153

Query: 133 PVAMNP------GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
            V          GT VEV        +     +          + +RR+    P    + 
Sbjct: 154 VVRREKRPASRRGTTVEVTIGDAVYESGRRGPR----------EYLRRLHAVNPHARISL 203

Query: 187 S 187
            
Sbjct: 204 R 204


>gi|453419|emb|CAA54665.1| gyrB [Mycoplasma hominis ATCC 23114]
          Length = 648

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  +     +  ++ DNG GM 
Sbjct: 46 EIVDNSVDEAMAGFATEIKIKLYPN--NVIEVEDNGRGMP 83


>gi|86139905|ref|ZP_01058470.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. MED193]
 gi|85823323|gb|EAQ43533.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. MED193]
          Length = 590

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE ++A G  +   + DNG G+  E+        
Sbjct: 480 RLEQVMVNLLRNALDA--TKSVEEPEVEILLAAGETATLTVRDNGVGI--EDFGSLFDPF 535

Query: 76  CTSKISDD 83
            T+K + D
Sbjct: 536 YTTKQAGD 543


>gi|260642826|ref|ZP_05859558.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260620370|gb|EEX43241.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 751

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 17/103 (16%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISD- 82
            AI ELI+N+ DA + + +        +   + D+G GMT EE         T SK+++ 
Sbjct: 24  TAINELIKNAHDAYADKFDIDFLRCN-NLLVLRDDGLGMTKEEFETRWLTLGTESKLANK 82

Query: 83  -------DFSNIHT--FGFRGE---ALPSIGAVSHLTLMSRPP 113
                  D S       G +G    A+ SIG  S + ++S+  
Sbjct: 83  KSSLPPIDISKPRRPIMGEKGIGRLAIASIG--SQVLIVSKAK 123


>gi|194339115|gb|ACF49473.1| GyrB [Amycolatopsis thermoflava]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 8/46 (17%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          E+++NS+D   A  +++VE  + A GG    ++ D+G G+  EE P
Sbjct: 7  EVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVEEHP 49


>gi|194339087|gb|ACF49459.1| GyrB [Amycolatopsis methanolica]
          Length = 463

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 8/46 (17%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          E+++NS+D   A  +++VE  + A GG    ++ D+G G+  EE P
Sbjct: 6  EVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVEEHP 48


>gi|194339069|gb|ACF49450.1| GyrB [Amycolatopsis eurytherma]
          Length = 457

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 8/46 (17%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          E+++NS+D   A  +++VE  + A GG    ++ D+G G+  EE P
Sbjct: 6  EVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVEEHP 48


>gi|310767444|gb|ADP12394.1| putative 2-component sensor protein [Erwinia sp. Ejp617]
          Length = 579

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+LDA        +  ++    G    +++D+G G+ +  +     +  +SK
Sbjct: 478 LIENALDAAGESGDGEISVLLHYQNGWLNCEVSDDGPGIAAPRLKNIFAKGYSSK 532


>gi|283478631|emb|CAY74547.1| putative 2-component sensor protein [Erwinia pyrifoliae DSM 12163]
          Length = 579

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+LDA        +  ++    G    +++D+G G+ +  +     +  +SK
Sbjct: 478 LIENALDAAGESGDGEISVLLHYQNGWLNCEVSDDGPGIAAPRLKNIFAKGYSSK 532


>gi|259908662|ref|YP_002649018.1| sensory histidine kinase DcuS [Erwinia pyrifoliae Ep1/96]
 gi|224964284|emb|CAX55791.1| Sensor protein [Erwinia pyrifoliae Ep1/96]
          Length = 546

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+LDA        +  ++    G    +++D+G G+ +  +     +  +SK
Sbjct: 445 LIENALDAAGESGDGEISVLLHYQNGWLNCEVSDDGPGIAAPRLKNIFAKGYSSK 499


>gi|119944485|ref|YP_942165.1| C4-dicarboxylate transport sensor protein ATPase subunit
           [Psychromonas ingrahamii 37]
 gi|119863089|gb|ABM02566.1| sensor protein for C4-dicarboxylate transport, sensor protein,
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 594

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIA-GGGKSFFQITDNG 60
           L +K + Q+ A E I+     +  L+ N++ A    +  ++E +++  G ++  ++ D G
Sbjct: 476 LPDKPV-QVKA-EPIQ-LEQIVVNLLSNAIQAMEECKEKQIEIILSVNGQQAQIEVIDTG 532

Query: 61  FGMTSEEIPMAVQRHCTSK 79
            G+   ++    +   T+K
Sbjct: 533 IGINESDLAKLFEPFFTTK 551


>gi|333025714|ref|ZP_08453778.1| putative DNA gyrase subunit B [Streptomyces sp. Tu6071]
 gi|332745566|gb|EGJ76007.1| putative DNA gyrase subunit B [Streptomyces sp. Tu6071]
          Length = 765

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I + GG    ++ DNG G+ 
Sbjct: 143 VQEVVDNSVDEALAGHADTIDVTILSDGG---VRVVDNGRGIP 182


>gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
 gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
          Length = 441

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D    +V  V+    K   ++ DNG G+  E++    +R  
Sbjct: 326 LVDNAIKYTQDNGIVQV-VVLKDEEKIVIKVIDNGVGIPKEDVERIFERFY 375


>gi|294675548|ref|YP_003576164.1| sensor histidine kinase [Prevotella ruminicola 23]
 gi|294473924|gb|ADE83313.1| sensor histidine kinase [Prevotella ruminicola 23]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA   + ++    I    +   +ITD G G+  ++I        T+K
Sbjct: 273 VIENLCKNAVDAMEGAGKISIQLIDDDHRVAIEITDTGKGIRKKDINHVFTPGFTTK 329


>gi|260591755|ref|ZP_05857213.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
 gi|260536039|gb|EEX18656.1| DNA gyrase, B subunit [Prevotella veroralis F0319]
          Length = 657

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A     +E  I     +   + D+G G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCQNIEVTINED--NSITVEDDGRGIPVDEHKKL 91


>gi|163750553|ref|ZP_02157791.1| flagellar regulatory protein B [Shewanella benthica KT99]
 gi|161329708|gb|EDQ00697.1| flagellar regulatory protein B [Shewanella benthica KT99]
          Length = 373

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKS-----FFQITDNGFGMTSEEIPMAVQRHCT 77
            S AI  L+ NS++A ++ +E      G          +TDNG G+  E     ++   T
Sbjct: 249 LSSAINNLVINSIEAGATLIELR----GSETESQIQIHVTDNGRGLDKEMQQKVLEPFFT 304

Query: 78  SK 79
           +K
Sbjct: 305 TK 306


>gi|126661626|ref|ZP_01732651.1| heat shock protein 90 [Cyanothece sp. CCY0110]
 gi|126617088|gb|EAZ87932.1| heat shock protein 90 [Cyanothece sp. CCY0110]
          Length = 418

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 78/286 (27%), Gaps = 47/286 (16%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N++DA S                   +   +    K+   I DNG GMT +EI 
Sbjct: 32  LRELISNAVDAISKLKMASLAGELSGDVPEPEITITVDKSNKTL-SIYDNGIGMTVDEIK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
             + +   S          K ++D       GF      S   V+  + + +       G
Sbjct: 91  KYINQVAFSSAEEFVKKYQKSANDLIGHFGLGF-----YSAFMVAKQVEIDT--LSYKEG 143

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           +Q        S    +  +  T V        +     +L+S       I  +++  +  
Sbjct: 144 SQAVHWSCDGSPEFEITESSKTQVGTTITLTLMDDEQEYLES-----QRIRQLVKTYSDF 198

Query: 179 YP-KVSFTFSTIKSNRYKMNFQS---TNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
            P  + F   TI   +          T+ ++ E    +                    L 
Sbjct: 199 VPVPIKFENETINRQKALWKESPQNLTDEDYLEFYRYLYPFQEDPLLWVHLNTDYPYLLN 258

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           G    P                      F+         E +   R
Sbjct: 259 GILYFPKLRPDVDVSQGHI--KLFCNQVFVNDHCEEIIPEFLMPLR 302


>gi|187477033|ref|YP_785057.1| two-component system sensor kinase [Bordetella avium 197N]
 gi|115421619|emb|CAJ48129.1| two-component system sensor kinase [Bordetella avium 197N]
          Length = 436

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 25  IAIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
             ++ L+ N+++  A +   E   +  G+    + DNG G+  EE+P   QR+ +S++ D
Sbjct: 330 TVLRNLVRNAIEHAAPA---ELRASLDGQGSLVLADNGRGIAPEELPFVFQRYFSSRLKD 386


>gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 429

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D    +V  V+    K   ++ DNG G+  E++    +R  
Sbjct: 326 LVDNAIKYTQDNGIVQV-VVLKDEEKIVIKVIDNGVGIPKEDVERIFERFY 375


>gi|298206924|ref|YP_003715103.1| sensor histidine kinase [Croceibacter atlanticus HTCC2559]
 gi|83849558|gb|EAP87426.1| sensor histidine kinase [Croceibacter atlanticus HTCC2559]
          Length = 387

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA     ++    I        +I+D G G+   +     +   TSK
Sbjct: 292 LVKNAIDAMKGKGQLSLRLIEDQKVVKIEISDTGKGIPKSKFKKVFETGYTSK 344


>gi|294631859|ref|ZP_06710419.1| LOW QUALITY PROTEIN: two-component system sensor kinase
           [Streptomyces sp. e14]
 gi|292835192|gb|EFF93541.1| LOW QUALITY PROTEIN: two-component system sensor kinase
           [Streptomyces sp. e14]
          Length = 410

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDA-ESS---RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
               +  L++N+LDA  ++   RVE  +   G++   ++ D G G+ ++   +      +
Sbjct: 225 LVTVVGNLVDNALDAVAATPHARVEVELRAEGRTVVLRVRDTGPGIPADRRDLIFTEGWS 284

Query: 78  SK 79
           +K
Sbjct: 285 TK 286


>gi|315497055|ref|YP_004085859.1| DNA gyrase, b subunit [Asticcacaulis excentricus CB 48]
 gi|315415067|gb|ADU11708.1| DNA gyrase, B subunit [Asticcacaulis excentricus CB 48]
          Length = 815

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G     ++D+G GM  +
Sbjct: 50 VYEVVDNAIDEALAGHATRVEVILNADG--SCSVSDDGRGMPVD 91


>gi|116619533|ref|YP_821689.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222695|gb|ABJ81404.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 532

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 25  IAIKELIENSLDAESSR------VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             +  L+ N+  AE+++      V    +   G +   ++DNG G+  E +        T
Sbjct: 413 QVVLNLVLNA--AEATQARPDRHVTVSTSSSEGMAQIFVSDNGEGIPPENLSKIFDPFFT 470

Query: 78  SK 79
           +K
Sbjct: 471 TK 472


>gi|134287894|ref|YP_001110059.1| hypothetical protein Bcep1808_7657 [Burkholderia vietnamiensis
          G4]
 gi|134132544|gb|ABO60527.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 810

 Score = 45.8 bits (107), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II+ I    AG        AI EL+ NS+DA ++ V+  +   G   F+ +D+G G
Sbjct: 7  LDPQIIHHIIYSQAG----SIGKAIIELLMNSVDARATAVQLSMTKEG---FECSDDGNG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            + E++     R  T
Sbjct: 60 FASREDVIRYFGRFGT 75


>gi|311695418|gb|ADP98291.1| DNA topoisomerase IV, subunit B [marine bacterium HP15]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  + R++ V+   G     + D+G GM  +
Sbjct: 32 RPNHLAQEVIDNSVDEALAGHAKRIDVVLYSDG--SLSVEDDGRGMPVD 78


>gi|300814230|ref|ZP_07094506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511654|gb|EFK38878.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 605

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 23/62 (37%)

Query: 38  ESSRVETVI--------AGGGKSFF---------------QITDNGFGMTSEEIPMAVQR 74
            +S++   I          GGK                   + DNG G+  E++PM  +R
Sbjct: 488 GASQILINIISNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMIFER 547

Query: 75  HC 76
             
Sbjct: 548 FY 549


>gi|282882283|ref|ZP_06290915.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297877|gb|EFA90341.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
          Length = 581

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 23/62 (37%)

Query: 38  ESSRVETVI--------AGGGKSFF---------------QITDNGFGMTSEEIPMAVQR 74
            +S++   I          GGK                   + DNG G+  E++PM  +R
Sbjct: 464 GASQILINIISNALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMIFER 523

Query: 75  HC 76
             
Sbjct: 524 FY 525


>gi|257057723|ref|YP_003135555.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Saccharomonospora viridis DSM 43017]
 gi|256587595|gb|ACU98728.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Saccharomonospora viridis DSM 43017]
          Length = 527

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 21  ERPSIAIKELIENSLDA--ES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
                 +  L++N+LDA   +  + +E  +    G     + D+G G+  E         
Sbjct: 413 TDLVTVVGNLVDNALDAVRGAPEAWIEIDVRERDGAVSVVVRDSGPGVAPEIATEVFTHG 472

Query: 76  CTSKISDDFSNIHTFGFRGEALP 98
            T+K ++   +      RG  L 
Sbjct: 473 FTTKAAEHGDS------RGLGLA 489


>gi|149184516|ref|ZP_01862834.1| topoisomeraseB subunit [Erythrobacter sp. SD-21]
 gi|148831836|gb|EDL50269.1| topoisomeraseB subunit [Erythrobacter sp. SD-21]
          Length = 662

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A  +SR+E  +     +   ITDNG GM   E P 
Sbjct: 50 VAEVLDNSMDEAVAGHASRIEVRLDEN--NRVTITDNGRGMPVAEHPK 95


>gi|319787874|ref|YP_004147349.1| PAS/PAC sensor hybrid histidine kinase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466386|gb|ADV28118.1| PAS/PAC sensor hybrid histidine kinase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 638

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 15/85 (17%)

Query: 23  PSIAIKELIENSLDA--ESSRVET----------VIAGGGKSFFQITDNGFGMTSEEIPM 70
               +  L+ N+ DA   + RV             +  G     +++DNG G+ ++ +  
Sbjct: 392 LESVVLNLVINARDALRGAGRVTISARPAESLPGDLPPGEYVSLKVSDNGSGIPADIVDK 451

Query: 71  AVQRHCTSK-I--SDDFSNIHTFGF 92
             +   T+K I          T+GF
Sbjct: 452 VFEPFFTTKPIGQGTGLGLSMTYGF 476


>gi|319651104|ref|ZP_08005238.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
 gi|317397274|gb|EFV77978.1| DNA topoisomerase IV subunit B [Bacillus sp. 2_A_57_CT2]
          Length = 642

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +  +I     +   + DNG G+ 
Sbjct: 49 EIVDNSIDEALAGYCSEINVIIEKD--NSITVVDNGRGIP 86


>gi|297158796|gb|ADI08508.1| DNA gyrase subunit B [Streptomyces bingchenggensis BCW-1]
          Length = 680

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           ++E+++NS+D   A  +  +E  I   GG    ++ DNG G+  +
Sbjct: 71  VQEVVDNSVDEALAGHADTIEVTILPDGG---VRVVDNGRGIPVD 112


>gi|291563505|emb|CBL42321.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium
          SS3/4]
          Length = 639

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   + +   +   G     + DNG G+  E
Sbjct: 42 EIVDNAVDEHLAGFCTEITVTLEADG--SCTVKDNGRGIPVE 81


>gi|229072282|ref|ZP_04205487.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229082032|ref|ZP_04214520.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228701257|gb|EEL53755.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228710819|gb|EEL62789.1| Sensor histidine kinase [Bacillus cereus F65185]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 300 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 351


>gi|229112238|ref|ZP_04241778.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229130055|ref|ZP_04259017.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228653372|gb|EEL09248.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228671222|gb|EEL26526.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 216 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 267


>gi|229181098|ref|ZP_04308430.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|229193060|ref|ZP_04320015.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228590324|gb|EEK48188.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228602289|gb|EEK59778.1| Sensor histidine kinase [Bacillus cereus 172560W]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 300 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 351


>gi|213966260|ref|ZP_03394444.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46]
 gi|213951112|gb|EEB62510.1| DNA gyrase, B subunit [Corynebacterium amycolatum SK46]
          Length = 679

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ VE  +   GG    Q+ DNG G+  E
Sbjct: 44 EVVDNSVDEAMAGYATDVEVTLLEDGG---VQVRDNGRGIPVE 83


>gi|187933415|ref|YP_001884617.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721568|gb|ACD22789.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 25  IAIKELIENSLD-AESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCT 77
             I  L++N++  +E + ++  +          I DNG G+  E++    +   T
Sbjct: 367 QVILNLLDNAIKYSECTEIDIYMEHNEAYVIIYIADNGQGIPKEDLKNVFENFYT 421


>gi|218235067|ref|YP_002369578.1| sporulation kinase [Bacillus cereus B4264]
 gi|218163024|gb|ACK63016.1| sporulation kinase [Bacillus cereus B4264]
          Length = 406

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|206969863|ref|ZP_03230817.1| sporulation kinase [Bacillus cereus AH1134]
 gi|206735551|gb|EDZ52719.1| sporulation kinase [Bacillus cereus AH1134]
          Length = 406

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|161506253|ref|YP_001573365.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867600|gb|ABX24223.1| hypothetical protein SARI_04448 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 630

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +  V++  A+  P  +++F
Sbjct: 147 VQDLQVTGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLLHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|149173454|ref|ZP_01852084.1| sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148847636|gb|EDL61969.1| sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 480

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA  E   +E      GG+    I D+G G+  E+     Q + T+K
Sbjct: 365 LILNAMDATEEGESIEITTEARGGQIVISIHDDGEGIREEDKARLFQPYFTTK 417


>gi|78355925|ref|YP_387374.1| periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218330|gb|ABB37679.1| periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 840

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA--ESS-RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++   V   I    GG    ++ DNG G+  +++        ++K
Sbjct: 733 LVINALDACPDADGEVLVRISPRSGGMIAIEVADNGPGILPDDMSHVFDPFFSTK 787


>gi|30022843|ref|NP_834474.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|296505242|ref|YP_003666942.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|29898402|gb|AAP11675.1| Sporulation kinase [Bacillus cereus ATCC 14579]
 gi|296326294|gb|ADH09222.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 406

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|313499515|gb|ADR60881.1| Integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida BIRD-1]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ ++     G  +  ++ DNG G+  +E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAELQVS-REGSTTIIRVLDNGPGIPGDELDEVLKPFY 380


>gi|298682185|gb|ADI95253.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ ++     G  +  ++ DNG G+  +E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAELQVS-REGSTTIIRVLDNGPGIPGDELDEVLKPFY 380


>gi|284039451|ref|YP_003389381.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283818744|gb|ADB40582.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 663

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 30  LIENSLD---------AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N++          A S+ V   +  G      ++D G G+ +  +P    R  
Sbjct: 264 LLANAIKFTTGPATQKAGSTHVTVRLENGSPIRLSVSDTGIGIPTANLPHIFDRFY 319


>gi|149184514|ref|ZP_01862832.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Erythrobacter sp. SD-21]
 gi|148831834|gb|EDL50267.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Erythrobacter sp. SD-21]
          Length = 498

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 20/79 (25%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSL-----D-AESSRVETVIAGG---GKSFF 54
           + + E   ++IA  +I++        LIEN++     D A     E +I G    G    
Sbjct: 373 KSIPELESDRIAVEQILQN-------LIENAIKYSSPDRAG----EIIIEGSQAVGTVRI 421

Query: 55  QITDNGFGMTSEEIPMAVQ 73
            + DNG G+  E+     +
Sbjct: 422 DVIDNGRGIAPEDQERIFE 440


>gi|134085411|ref|NP_001076826.1| MORC family CW-type zinc finger 2 [Xenopus (Silurana) tropicalis]
 gi|134026036|gb|AAI35502.1| morc2 protein [Xenopus (Silurana) tropicalis]
          Length = 943

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVET-VIA----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++   +      GG     + D+G GM   E    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIFTVKREELRGGFMLCFL-DDGAGMDPSEAASVIQFGRSAKRTPE 93

Query: 84  FSNIHTFG 91
              I  +G
Sbjct: 94  SIQIGQYG 101


>gi|148548501|ref|YP_001268603.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
 gi|148512559|gb|ABQ79419.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 428

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            RP      +  L++N+L  A ++ ++     G  +  ++ DNG G+  +E+   ++   
Sbjct: 322 TRPHALRRVLVNLVDNALKFAGAAELQVS-REGSTTIIRVLDNGPGIPGDELDEVLKPFY 380


>gi|229147346|ref|ZP_04275695.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228636028|gb|EEK92509.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|330975950|gb|EGH76016.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 745

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  L+ N++  + +    +++      G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLVGNAI--KFTPKLGKIDVSAMSNGSEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|330994149|ref|ZP_08318077.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
 gi|329758616|gb|EGG75132.1| DNA gyrase subunit B [Gluconacetobacter sp. SXCC-1]
          Length = 680

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A  ++ ++  +  G      I DNG G+  +
Sbjct: 73  EILDNAMDEAVAGHATTIDVSLEAG--DCLTIRDNGRGIPVD 112


>gi|325262530|ref|ZP_08129267.1| sensory transduction histidine kinase [Clostridium sp. D5]
 gi|324032362|gb|EGB93640.1| sensory transduction histidine kinase [Clostridium sp. D5]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 32 ENSLDAESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS+ A +S +E  +         +   I D+G GM++E++        T
Sbjct: 14 ENSVRAGASLIEIGVSVQTEEDTLT-VVIKDDGCGMSAEQVEKVQDPFYT 62


>gi|320095172|ref|ZP_08026878.1| sensor histidine kinase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977877|gb|EFW09514.1| sensor histidine kinase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 715

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 36  DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           DA + R+   +   G      ++DNG G+  E +    + H T+K
Sbjct: 615 DAPA-RITIRVRPDGDGVAITVSDNGPGIAPEVVDKIFEPHFTTK 658


>gi|289674403|ref|ZP_06495293.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae FF5]
          Length = 747

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  L+ N++  + +    +++      G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLVGNAI--KFTPKLGKIDVSAMSNGSEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|229048478|ref|ZP_04194041.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228722843|gb|EEL74225.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|119487794|ref|ZP_01621303.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
 gi|119455627|gb|EAW36764.1| DNA topoisomerase IV subunit B [Lyngbya sp. PCC 8106]
          Length = 645

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E      G     +TD+G G+  +
Sbjct: 39 VYEVVDNSIDEALAGHCTHIEVDFNADG--SVTVTDDGRGIPVD 80


>gi|319898246|ref|YP_004158339.1| two-component sensor kinase BatS [Bartonella clarridgeiae 73]
 gi|319402210|emb|CBI75741.1| two-component sensor kinase BatS [Bartonella clarridgeiae 73]
          Length = 590

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 22  RPSIAIKELIENSLDAES------SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
           R    I  LIEN   A S       ++   +     +    + DNG G+ SE I    +R
Sbjct: 474 RLGQVISNLIEN---ARSFVPRKNGKICITMKNNASNLILTVEDNGPGIRSENIERIFER 530

Query: 75  HCT---SK 79
             T   SK
Sbjct: 531 FYTDRPSK 538


>gi|296392546|ref|YP_003657430.1| DNA gyrase subunit B [Segniliparus rotundus DSM 44985]
 gi|296179693|gb|ADG96599.1| DNA gyrase, B subunit [Segniliparus rotundus DSM 44985]
          Length = 673

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 31/178 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAV 72
           ++E+++NS+D   A  ++RV+  + A GG    ++ D+G G+            E+ + V
Sbjct: 46  VQEVVDNSVDEAMAGYATRVDVTLLADGG---VEVVDDGRGIPVAPHASGPPTVEVVLTV 102

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKIS 129
             H   K   D   + + G  G  +  + A+S    + +      +      +    K  
Sbjct: 103 L-HAGGKFDSDSYAV-SGGLHGVGISVVNALSYKLEVEI----DVDGFHWSQSYDKAKPG 156

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
            +        T   VR  +          ++   + + I   ++ MA     +  T +
Sbjct: 157 PLTKGDPVKRTGTTVR-FWADPEI----FETTHYDFDTIARRLQEMAFLNKGLIITLT 209


>gi|194339053|gb|ACF49442.1| GyrB [Amycolatopsis alba]
          Length = 449

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + + GG    ++ D+G G+  +          E+ + 
Sbjct: 6  VQEVVDNSVDEAMAGFATKVEVTLLSDGG---VRVVDDGRGIPVDIHPKEQKPTLEVVLT 62

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 63 VL-HAGGKFDSDSYAVS 78


>gi|167770843|ref|ZP_02442896.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM
           17241]
 gi|167666883|gb|EDS11013.1| hypothetical protein ANACOL_02196 [Anaerotruncus colihominis DSM
           17241]
          Length = 662

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A   +++E  +  G     +++DNG G+ 
Sbjct: 63  VYEIVDNSIDEALAGHCTKIEVDLLPGNI--VKVSDNGRGIP 102


>gi|50953931|ref|YP_061219.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950413|gb|AAT88114.1| DNA gyrase subunit B [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 663

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A  +  +E +I   G    ++ DNG G+  +E P
Sbjct: 48 VYEIVDNSVDEALAGYADNIEVMILPDG--SVRVFDNGRGIPVDEHP 92


>gi|33240384|ref|NP_875326.1| heat shock protein 90 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33237911|gb|AAP99978.1| HSP90 family molecular chaperone [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 633

 Score = 45.8 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 83/269 (30%), Gaps = 47/269 (17%)

Query: 27  IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N +DA S R                +E  I    KS    +DNG GM+S+E+  
Sbjct: 32  LRELVSNGVDAISKRRMASIAGDCEPNEEAKIEINIDR-EKSTITFSDNGIGMSSDEVKK 90

Query: 71  AVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGA 119
            + +   S          K  +        GF      S   V+  + ++++  +  + A
Sbjct: 91  YINQVAFSSAQEFLQKYEKEQEGIIGHFGLGF-----YSSFMVANKVEIITKSAKEGSTA 145

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                     S         T +E  +    I   L   + E +E   I  +I++     
Sbjct: 146 VKW-------SCDGSPNFSLTEIEREEAGTDIILYLMQEEIEYIEPARIKTLIKKYCDFM 198

Query: 180 P-KVSFTFSTIKSNRYKMNFQSTNGNFPERI---SQVIGEDFINNAVELNEKSNEITLQG 235
           P  V F+  +I            +    + I     +                    LQG
Sbjct: 199 PVDVQFSGESINRRNPPWRTSPQDMQEKDYIELYKYLYPFQGDPLFWIHLNTDYPYNLQG 258

Query: 236 YTGIPTFNRG---NANQFYVFINGRTVQD 261
               P  +      + +  ++ N   V D
Sbjct: 259 ILFFPKISGRADWESGEIKLYSNHVFVSD 287


>gi|303229212|ref|ZP_07316011.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516122|gb|EFL58065.1| DNA gyrase, B subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 633

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 40 VYEVVDNSVDEALAGYATHIEVSINED--NSITVVDDGRGIP 79


>gi|303230676|ref|ZP_07317426.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514731|gb|EFL56723.1| DNA gyrase, B subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 633

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 40 VYEVVDNSVDEALAGYATHIEVSINED--NSITVVDDGRGIP 79


>gi|294011811|ref|YP_003545271.1| hypothetical protein SJA_C1-18250 [Sphingobium japonicum UT26S]
 gi|292675141|dbj|BAI96659.1| hypothetical protein SJA_C1-18250 [Sphingobium japonicum UT26S]
          Length = 553

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 20/132 (15%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS--- 78
           P  AI E+++NS  A +S V+  +    G     I D+G G+  +   +    H  S   
Sbjct: 27  PEDAIAEILQNSRRAGASCVDIDLLNRAGHPVLTIRDDGIGID-DPAALLALGH--SGWG 83

Query: 79  -KISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQ-----IAISGEKISSVR 132
            KI+    +    G     + S+  +  +   S      +G +      A S ++  ++ 
Sbjct: 84  DKIAQA-EDPAGMG-----VFSLAGL-RVEYRSYSHSAKSGWRVIIDGDAWSHQRPIAIE 136

Query: 133 PVAMNPGTIVEV 144
           P   + GT + +
Sbjct: 137 PFDHSNGTEIHI 148


>gi|282863315|ref|ZP_06272374.1| DNA gyrase, B subunit [Streptomyces sp. ACTE]
 gi|282561650|gb|EFB67193.1| DNA gyrase, B subunit [Streptomyces sp. ACTE]
          Length = 689

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEAMAGHADTIDVTILADGG---VRVVDNGRGIP 106


>gi|290958999|ref|YP_003490181.1| DNA gyrase subunit B [Streptomyces scabiei 87.22]
 gi|260648525|emb|CBG71636.1| DNA gyrase subunit B [Streptomyces scabiei 87.22]
          Length = 681

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 62  VQEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 101


>gi|320009755|gb|ADW04605.1| DNA gyrase, B subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 689

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEAMAGHADTIDVTIFADGG---VRVVDNGRGIP 106


>gi|302559661|ref|ZP_07312003.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000]
 gi|302477279|gb|EFL40372.1| DNA gyrase, B subunit [Streptomyces griseoflavus Tu4000]
          Length = 686

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 106


>gi|300771713|ref|ZP_07081588.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761702|gb|EFK58523.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 343

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 54/128 (42%)

Query: 3   IRKLSEKIINQIAAGEI---IE--RPSIAIKELIENSLD--AESSRVETVIAG------- 48
           I  L E  I+++ +G I   IE    S  IKE IEN LD  A S +++ V          
Sbjct: 171 IHDLDE--ISKLESGRISLNIEKFDLSELIKETIEN-LDDKARSQKIDIVFKQKYQNVTF 227

Query: 49  -------------------------GGKSFFQ-----------ITDNGFGMTSEEIPMAV 72
                                    GG +  +           +TD+G G+  + +P   
Sbjct: 228 VKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIEEKNLPRVF 287

Query: 73  QRHC-TSK 79
           +R   T K
Sbjct: 288 ERFYRTDK 295


>gi|238018216|ref|ZP_04598642.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC
          17748]
 gi|237864687|gb|EEP65977.1| hypothetical protein VEIDISOL_00040 [Veillonella dispar ATCC
          17748]
          Length = 633

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 40 VYEVVDNSVDEALAGYATHIEVSINED--NSITVVDDGRGIP 79


>gi|228961050|ref|ZP_04122677.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228798595|gb|EEM45581.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|256379697|ref|YP_003103357.1| histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255924000|gb|ACU39511.1| histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 455

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
               + EL+ N++  + ++ +       G+     +TDNG G+  +E   A+ R   S
Sbjct: 349 LGSVLDELVGNAIRLSGATEIRIWAGTAGEDVELHVTDNGTGLDDQERANALSRFWRS 406


>gi|194339057|gb|ACF49444.1| GyrB [Amycolatopsis australiensis]
          Length = 451

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  E          E+ + 
Sbjct: 7  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVEMHPKEQKPTIEVVLT 63

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 64 VL-HAGGKFDSDSYAVS 79


>gi|161898002|gb|ABX80110.1| DNA gyrase subunit B [Streptomyces swartbergensis]
          Length = 483

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 17 VQEVVDNSVDEALAGYADTIDVTILADGG---VRVVDNGRGIP 56


>gi|149371940|ref|ZP_01891259.1| sensor histidine kinase [unidentified eubacterium SCB49]
 gi|149355080|gb|EDM43641.1| sensor histidine kinase [unidentified eubacterium SCB49]
          Length = 381

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N +DA      +   +   G     +ITD G G+  ++     +   T+K
Sbjct: 286 LVKNGIDAMRGKGTISIKMEHKGNLVIIKITDAGKGIPKKDFKNVFRPGFTTK 338


>gi|303256368|ref|ZP_07342382.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47]
 gi|331001506|ref|ZP_08325124.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT
          11859]
 gi|302859859|gb|EFL82936.1| DNA gyrase, B subunit [Burkholderiales bacterium 1_1_47]
 gi|329568235|gb|EGG50052.1| DNA gyrase, B subunit [Parasutterella excrementihominis YIT
          11859]
          Length = 836

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I         + DNG G+ ++
Sbjct: 52 EVVDNSIDEALAGYADHINVTINRD--ESITVVDNGRGIPTD 91


>gi|255280496|ref|ZP_05345051.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255268961|gb|EET62166.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 395

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 41  RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPS 99
           R+   +   G     +I DNG G+  +E+P    R        D S   + G  G     
Sbjct: 306 RINIRVKDVGDFVQIEIEDNGRGIGPKELPYIFDRFY----RTDASRNSSMGGSG----- 356

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTI 141
           IG    L+++ +  +++ G   A S     +V    +   T+
Sbjct: 357 IG----LSIVKKIVEDHGGKIWATSKPGTGTVMYFVLRKVTV 394


>gi|49475554|ref|YP_033595.1| DNA topoisomerase IV subunit B [Bartonella henselae str. Houston-1]
 gi|49238360|emb|CAF27584.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
          Length = 685

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P
Sbjct: 82  EIIDNAMDEAVAGYADFIDVSLEKNG--YLTVTDNGRGIPVENHP 124


>gi|310778264|ref|YP_003966597.1| histidine kinase [Ilyobacter polytropus DSM 2926]
 gi|309747587|gb|ADO82249.1| histidine kinase [Ilyobacter polytropus DSM 2926]
          Length = 426

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
              G+      DNG G+  + +        T+KI+
Sbjct: 356 EQDGRDVVVFEDNGCGIPEDNLSKVFSPFYTTKIN 390


>gi|301308180|ref|ZP_07214134.1| DNA gyrase, B subunit [Bacteroides sp. 20_3]
 gi|300833650|gb|EFK64266.1| DNA gyrase, B subunit [Bacteroides sp. 20_3]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ VI     +   +TD+G G+  +
Sbjct: 46 VYEVVDNSIDEALAGYCTYIDVVINED--NSITVTDDGRGIPVD 87


>gi|298374500|ref|ZP_06984458.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19]
 gi|298268868|gb|EFI10523.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_19]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ VI     +   +TD+G G+  +
Sbjct: 46 VYEVVDNSIDEALAGYCTYIDVVINED--NSITVTDDGRGIPVD 87


>gi|283852478|ref|ZP_06369746.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B]
 gi|283572086|gb|EFC20078.1| DNA gyrase, B subunit [Desulfovibrio sp. FW1012B]
          Length = 806

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 79/250 (31%), Gaps = 39/250 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A    R+   +   G     ++DNG G+      +E   AV+     
Sbjct: 46  VYEVVDNSIDEAMAGYCDRINVAVHLDG--SVTVSDNGRGIPVDMHPKEHRPAVEVVMTV 103

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR 132
            H   K  +D   + + G  G  +  + A+S  L +  R               K    R
Sbjct: 104 LHAGGKFDNDTYKV-SGGLHGVGVSVVNALSEYLEVTVRRNG------------KKYQQR 150

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLK------SEQVETNLITDVIRRMAIAYPKVSFTF 186
                P T V V          + F        + Q     +      +A     +   F
Sbjct: 151 YERGVPVTQVTVIGEAENTGTTIRFKPDEEIFETNQFSHETLAKRFEELAYLNRGLEIDF 210

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGN 246
                   ++ ++   G          GE  I++ +E   + + + +        +N   
Sbjct: 211 R-DDRTSERVTYRFDGGIKRFVADLNAGEPVIHDIIEGLAEMDGVVVDFAL---QYNANY 266

Query: 247 ANQFYVFING 256
             + Y F N 
Sbjct: 267 KEEVYTFANN 276


>gi|256838953|ref|ZP_05544463.1| DNA gyrase, B subunit [Parabacteroides sp. D13]
 gi|262382583|ref|ZP_06075720.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B]
 gi|256739872|gb|EEU53196.1| DNA gyrase, B subunit [Parabacteroides sp. D13]
 gi|262295461|gb|EEY83392.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_33B]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ VI     +   +TD+G G+  +
Sbjct: 46 VYEVVDNSIDEALAGYCTYIDVVINED--NSITVTDDGRGIPVD 87


>gi|255012609|ref|ZP_05284735.1| DNA gyrase, B subunit [Bacteroides sp. 2_1_7]
          Length = 620

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ VI     +   +TD+G G+  +
Sbjct: 15 VYEVVDNSIDEALAGYCTYIDVVINED--NSITVTDDGRGIPVD 56


>gi|209883685|ref|YP_002287542.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5]
 gi|209871881|gb|ACI91677.1| DNA gyrase, B subunit [Oligotropha carboxidovorans OM5]
          Length = 812

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G     + D+G G+ ++
Sbjct: 54 VYEVVDNAIDEALAGYATRVEVILNPDG--SVTVRDDGRGIPTD 95


>gi|150010130|ref|YP_001304873.1| DNA gyrase subunit B [Parabacteroides distasonis ATCC 8503]
 gi|149938554|gb|ABR45251.1| DNA gyrase, B subunit [Parabacteroides distasonis ATCC 8503]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ VI     +   +TD+G G+  +
Sbjct: 46 VYEVVDNSIDEALAGYCTYIDVVINED--NSITVTDDGRGIPVD 87


>gi|157369309|ref|YP_001477298.1| histidine kinase [Serratia proteamaculans 568]
 gi|157321073|gb|ABV40170.1| histidine kinase [Serratia proteamaculans 568]
          Length = 585

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 30  LIENSLDAESSRVE--TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NSL A + ++     +    +    + D+G G+ +E++ +      +SK
Sbjct: 477 LLSNSLQAGAQQITLRLEVDQHQQRLI-VEDDGGGLNAEQLTLPFVPFRSSK 527


>gi|167648606|ref|YP_001686269.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167351036|gb|ABZ73771.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 31  IENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           +EN++D A +  +            ++ D+G G + E +    + + TS
Sbjct: 357 VENAVDFARAEVIVIARFDARAVVIEVRDDGPGFSPEILAKLGEPYVTS 405


>gi|145224469|ref|YP_001135147.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
 gi|315444805|ref|YP_004077684.1| histidine kinase [Mycobacterium sp. Spyr1]
 gi|145216955|gb|ABP46359.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
 gi|315263108|gb|ADT99849.1| histidine kinase [Mycobacterium sp. Spyr1]
          Length = 380

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSL--DAESSRVETVI-AGGGKSFFQIT 57
           M  R+L       + A E  +R S  +  L++N+L   A   RVE      G +    +T
Sbjct: 256 MSARELP-----LLRADE--QRLSQVLDNLLDNALRHTARGGRVEIHCHTEGARVRIAVT 308

Query: 58  DNGFGMTSEEIPMAVQRHC 76
           D+G G+ +E +    +R  
Sbjct: 309 DDGEGIAAEHLSSVFERFY 327


>gi|322370369|ref|ZP_08044928.1| DNA topoisomerase VI subunit B [Haladaptatus paucihalophilus DX253]
 gi|320550077|gb|EFW91732.1| DNA topoisomerase VI subunit B [Haladaptatus paucihalophilus DX253]
          Length = 802

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 35/187 (18%)

Query: 23  PSIAIKELIENSLDA--ESS---RVETVIAGGG--KSFFQITDNGFGMTSEEIPMAV--- 72
              A+KE ++N+LDA  E+     V   I   G       + D G G+T E+IP      
Sbjct: 43  LVTAVKEAVDNALDASEEARLKPFVRVKIEEVGDYYRLI-VEDEGPGITREQIPKVFGKL 101

Query: 73  ---QRHCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNN--TGA 119
               R              + G +G  +    AV  S LT      + S+P  ++     
Sbjct: 102 LYGSRFH--------KREQSRGQQGIGIS--AAVLYSQLTSGKPAKITSKPKGSDRQRYF 151

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
           ++ I  ++         +   +             L    + +    LI   I+  A+  
Sbjct: 152 ELIIDTDENEPEIQSESDTPPVGRELVGTHGTRIELEMEANMRARQQLIR-YIKHTAVVN 210

Query: 180 PKVSFTF 186
           P     F
Sbjct: 211 PHAKIVF 217


>gi|313204046|ref|YP_004042703.1| integral membrane sensor signal transduction histidine kinase
           [Paludibacter propionicigenes WB4]
 gi|312443362|gb|ADQ79718.1| integral membrane sensor signal transduction histidine kinase
           [Paludibacter propionicigenes WB4]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 30  LIENSLDAESSRVETVIA----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN++   +  V+  I       G     + DNG G+++ ++     R   S
Sbjct: 357 LVENAIKYSNKEVDINIEIVDVNEGIK-ISVKDNGLGISAYDLKFIFDRFYRS 408


>gi|222628592|gb|EEE60724.1| hypothetical protein OsJ_14235 [Oryza sativa Japonica Group]
          Length = 788

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVIAGGGKSFFQ---ITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   +    K   +   + D+G GM  +++   +    +  SK+
Sbjct: 146 ELLDNSLDEVINGATYVNIDMLENNKDKTRMLLVEDDGGGMDPDKMRQCMSLGYSAKSKV 205

Query: 81  SDDFSNIHTFG 91
           +     I  +G
Sbjct: 206 AS---TIGQYG 213


>gi|194380232|dbj|BAG63883.1| unnamed protein product [Homo sapiens]
          Length = 963

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG       D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFMLC-CLDDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|116309094|emb|CAH66201.1| OSIGBa0148D14.7 [Oryza sativa Indica Group]
          Length = 772

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVIAGGGKSFFQ---ITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   +    K   +   + D+G GM  +++   +    +  SK+
Sbjct: 146 ELLDNSLDEVINGATYVNIDMLENNKDKTRMLLVEDDGGGMDPDKMRQCMSLGYSAKSKV 205

Query: 81  SDDFSNIHTFG 91
           +     I  +G
Sbjct: 206 AS---TIGQYG 213


>gi|58585021|ref|YP_198594.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
 gi|58419337|gb|AAW71352.1| DNA gyrase, topoisomerase II, B subunit, GyrB [Wolbachia
          endosymbiont strain TRS of Brugia malayi]
          Length = 792

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 40 VYEVVDNAIDESLAGYCDKIEVSINEDG--SVSVTDNGRGIPTD 81


>gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 441

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D    +V  V+    K   ++ DNG G+  E++    +R  
Sbjct: 326 LVDNAIKYTQDNGIVQV-VVLKDEEKIVIKVIDNGVGIPKEDVERIFERFY 375


>gi|167470305|ref|ZP_02335009.1| DNA topoisomerase IV, B subunit [Yersinia pestis FV-1]
          Length = 593

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  R              + 
Sbjct: 90  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDKV 148

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--FT 185
                               +      ++F  S +   + ++ +++  A+  P V   F 
Sbjct: 149 QDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFK 204

Query: 186 FSTIKSNRYKMNFQSTNGNFPERI 209
                + +             E +
Sbjct: 205 DQVNNTEQRWCYADGLTDYLMEAV 228


>gi|187918301|ref|YP_001883864.1| DNA gyrase subunit B [Borrelia hermsii DAH]
 gi|119861149|gb|AAX16944.1| DNA gyrase subunit B [Borrelia hermsii DAH]
          Length = 639

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 34/249 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR 74
           + E+++NS+D   A    ++E VI     +   + DNG G+      EE    + + + +
Sbjct: 42  VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTDVHEEEGISALELVLTK 99

Query: 75  -HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            H   K +     + + G  G       AL S  AV    ++SR  +             
Sbjct: 100 LHSGGKFNKGTYKV-SGGLHGVGISVVNALSSFLAV----IVSRDGKLFKQTYSRGIPTS 154

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
              +  V+   GT V          A     ++ + +   ++  +R +A    K+  +  
Sbjct: 155 EVDIIGVSSARGTKVT-------FLADSEIFETLEYDFETLSKRLRELAFLNDKIRISIE 207

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA 247
             +S + K       G     +  +              + +   +    G+     G +
Sbjct: 208 DRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSVGLKW-TEGYS 266

Query: 248 NQFYVFING 256
           +    F+N 
Sbjct: 267 DHILSFVNN 275


>gi|149376129|ref|ZP_01893894.1| Na+/proline symporter [Marinobacter algicola DG893]
 gi|149359534|gb|EDM47993.1| Na+/proline symporter [Marinobacter algicola DG893]
          Length = 986

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESSRV--ETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R       L+ N+ DA  S +  E  I     G  +  ++TD+G G+  +++    +  
Sbjct: 864 QRLVQVFINLLANARDA--SPIGGEVRISGNRDGYSAIIEVTDDGSGIPKDQLDHIFEPF 921

Query: 76  CTSK 79
            T+K
Sbjct: 922 YTTK 925


>gi|51597693|ref|YP_071884.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP
           32953]
 gi|186896834|ref|YP_001873946.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis PB1/+]
 gi|51590975|emb|CAH22633.1| topoisomerase IV subunit B [Yersinia pseudotuberculosis IP 32953]
 gi|186699860|gb|ACC90489.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  R              + 
Sbjct: 90  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDKV 148

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--FT 185
                               +      ++F  S +   + ++ +++  A+  P V   F 
Sbjct: 149 QDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFK 204

Query: 186 FSTIKSNRYKMNFQSTNGNFPERI 209
                + +             E +
Sbjct: 205 DQVNNTEQRWCYADGLTDYLMEAV 228


>gi|50119294|ref|YP_048461.1| DNA topoisomerase IV subunit B [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609820|emb|CAG73254.1| topoisomerase IV subunit B [Pectobacterium atrosepticum SCRI1043]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S       + G  G  +  + A+S  + +  +      +   +    
Sbjct: 89  ELILCRLHAGGKFSGKNYQ-FSGGLHGVGISVVNALSTRVEVTVKRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            ++++        N GT V              F  S +   + +T +++  A+  P V 
Sbjct: 148 VQELTVTGTCGRRNTGTRVHFW-------PDEKFFDSARFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +        N    E I+ +
Sbjct: 201 IIFKDKVNNTEQRWCYLDGLNDYLCEAINGL 231


>gi|49474260|ref|YP_032302.1| DNA topoisomerase IV subunit B [Bartonella quintana str. Toulouse]
 gi|49239764|emb|CAF26151.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
          Length = 685

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P  + +
Sbjct: 82  EIIDNAMDEAVAGYADLIDVSLERNG--YLTVTDNGRGIPVENHPQMLDK 129


>gi|33592391|ref|NP_880035.1| DNA topoisomerase IV subunit B [Bordetella pertussis Tohama I]
 gi|33572036|emb|CAE41560.1| topoisomerase IV subunit B [Bordetella pertussis Tohama I]
 gi|332381807|gb|AEE66654.1| DNA topoisomerase IV subunit B [Bordetella pertussis CS]
          Length = 653

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          E P   ++E+I+N+ D   A    +++  + G G     + D+G G+      EE    +
Sbjct: 31 ENPLHIVQEVIDNAADEALAGYGKQIQVTLHGDG--SISVEDDGRGIPVGLHPEENAPVV 88

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 89 ELVFTRLHA 97


>gi|33596500|ref|NP_884143.1| DNA topoisomerase IV subunit B [Bordetella parapertussis 12822]
 gi|33602205|ref|NP_889765.1| DNA topoisomerase IV subunit B [Bordetella bronchiseptica RB50]
 gi|33566269|emb|CAE37180.1| topoisomerase IV subunit B [Bordetella parapertussis]
 gi|33576643|emb|CAE33721.1| topoisomerase IV subunit B [Bordetella bronchiseptica RB50]
          Length = 670

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           E P   ++E+I+N+ D   A    +++  + G G     + D+G G+      EE    +
Sbjct: 48  ENPLHIVQEVIDNAADEALAGYGKQIQVTLHGDG--SISVEDDGRGIPVGLHPEENAPVV 105

Query: 69  PMAVQR-HC 76
            +   R H 
Sbjct: 106 ELVFTRLHA 114


>gi|23978255|dbj|BAC21118.1| DNA gyrase B subunit [Oscillatoria sp. PCC 7112]
          Length = 396

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  +   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSIDEALAGHCTHIEIDLNADG--SVTVTDDGRGIP 49


>gi|6647532|sp|Q9ZFK1|GYRB_BORHE RecName: Full=DNA gyrase subunit B
 gi|3859564|gb|AAC72846.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317666|gb|AAT99954.1| DNA gyrase subunit B [Borrelia hermsii DAH]
 gi|51317668|gb|AAT99955.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317670|gb|AAT99956.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317672|gb|AAT99957.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317674|gb|AAT99958.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317676|gb|AAT99959.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317678|gb|AAT99960.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317680|gb|AAT99961.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317682|gb|AAT99962.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317684|gb|AAT99963.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317686|gb|AAT99964.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317688|gb|AAT99965.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317690|gb|AAT99966.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317692|gb|AAT99967.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317694|gb|AAT99968.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317696|gb|AAT99969.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317698|gb|AAT99970.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|51317700|gb|AAT99971.1| DNA gyrase subunit B [Borrelia hermsii]
 gi|112031373|gb|ABH88159.1| GyrB [Borrelia hermsii]
 gi|112031377|gb|ABH88161.1| GyrB [Borrelia hermsii]
          Length = 634

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 34/249 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR 74
           + E+++NS+D   A    ++E VI     +   + DNG G+      EE    + + + +
Sbjct: 37  VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTDVHEEEGISALELVLTK 94

Query: 75  -HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
            H   K +     + + G  G       AL S  AV    ++SR  +             
Sbjct: 95  LHSGGKFNKGTYKV-SGGLHGVGISVVNALSSFLAV----IVSRDGKLFKQTYSRGIPTS 149

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
              +  V+   GT V          A     ++ + +   ++  +R +A    K+  +  
Sbjct: 150 EVDIIGVSSARGTKVT-------FLADSEIFETLEYDFETLSKRLRELAFLNDKIRISIE 202

Query: 188 TIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNA 247
             +S + K       G     +  +              + +   +    G+     G +
Sbjct: 203 DRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSVGLKW-TEGYS 261

Query: 248 NQFYVFING 256
           +    F+N 
Sbjct: 262 DHILSFVNN 270


>gi|115524491|ref|YP_781402.1| ATPase domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gi|115518438|gb|ABJ06422.1| ATP-binding region, ATPase domain protein domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 870

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 13/70 (18%)

Query: 22  RPSIAIKELIENSLDA-ESSR-----------VET-VIAGGGKSFFQITDNGFGMTSEEI 68
            P++A++ELI+N+ DA ++ R           +   +++ GG+ +  + DNG GM+ + +
Sbjct: 382 DPTVALRELIQNAADAVQARRKHQRRAADWGLITVGLLSEGGQIWLVVEDNGIGMSEQVL 441

Query: 69  PMAVQRHCTS 78
              +    TS
Sbjct: 442 TGPLLDFGTS 451


>gi|22127385|ref|NP_670808.1| DNA topoisomerase IV subunit B [Yersinia pestis KIM 10]
 gi|45442746|ref|NP_994285.1| DNA topoisomerase IV subunit B [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108810691|ref|YP_646458.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|145597760|ref|YP_001161836.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F]
 gi|150260300|ref|ZP_01917028.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125]
 gi|153950532|ref|YP_001399571.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis IP
           31758]
 gi|162420269|ref|YP_001604896.1| DNA topoisomerase IV subunit B [Yersinia pestis Angola]
 gi|165924916|ref|ZP_02220748.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939896|ref|ZP_02228435.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008986|ref|ZP_02229884.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212022|ref|ZP_02238057.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167419067|ref|ZP_02310820.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425082|ref|ZP_02316835.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|170022910|ref|YP_001719415.1| DNA topoisomerase IV subunit B [Yersinia pseudotuberculosis YPIII]
 gi|218927861|ref|YP_002345736.1| DNA topoisomerase IV subunit B [Yersinia pestis CO92]
 gi|229837350|ref|ZP_04457513.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A]
 gi|229840562|ref|ZP_04460721.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842890|ref|ZP_04463042.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900889|ref|ZP_04516013.1| topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|270487739|ref|ZP_06204813.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27]
 gi|294502735|ref|YP_003566797.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003]
 gi|21960472|gb|AAM87059.1|AE013954_3 DNA topoisomerase IV subunit B [Yersinia pestis KIM 10]
 gi|45437612|gb|AAS63162.1| topoisomerase IV subunit B [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774339|gb|ABG16858.1| DNA topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|115346472|emb|CAL19345.1| topoisomerase IV subunit B [Yersinia pestis CO92]
 gi|145209456|gb|ABP38863.1| DNA topoisomerase IV subunit B [Yersinia pestis Pestoides F]
 gi|149289708|gb|EDM39785.1| topoisomerase IV subunit B [Yersinia pestis CA88-4125]
 gi|152962027|gb|ABS49488.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162353084|gb|ABX87032.1| DNA topoisomerase IV, B subunit [Yersinia pestis Angola]
 gi|165912207|gb|EDR30845.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923116|gb|EDR40267.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992325|gb|EDR44626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206768|gb|EDR51248.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963061|gb|EDR59082.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167055845|gb|EDR65626.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749444|gb|ACA66962.1| DNA topoisomerase IV, B subunit [Yersinia pseudotuberculosis YPIII]
 gi|229682228|gb|EEO78320.1| topoisomerase IV subunit B [Yersinia pestis Nepal516]
 gi|229690157|gb|EEO82214.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696928|gb|EEO86975.1| topoisomerase IV subunit B [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705473|gb|EEO91483.1| topoisomerase IV subunit B [Yersinia pestis Pestoides A]
 gi|262360767|gb|ACY57488.1| DNA topoisomerase IV subunit B [Yersinia pestis D106004]
 gi|262364712|gb|ACY61269.1| DNA topoisomerase IV subunit B [Yersinia pestis D182038]
 gi|270336243|gb|EFA47020.1| DNA topoisomerase IV, B subunit [Yersinia pestis KIM D27]
 gi|294353194|gb|ADE63535.1| DNA topoisomerase IV subunit B [Yersinia pestis Z176003]
 gi|320016769|gb|ADW00341.1| topoisomerase IV subunit B [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  R              + 
Sbjct: 90  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDKV 148

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--FT 185
                               +      ++F  S +   + ++ +++  A+  P V   F 
Sbjct: 149 QDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFK 204

Query: 186 FSTIKSNRYKMNFQSTNGNFPERI 209
                + +             E +
Sbjct: 205 DQVNNTEQRWCYADGLTDYLMEAV 228


>gi|294675052|ref|YP_003575668.1| sensor histidine kinase [Prevotella ruminicola 23]
 gi|294473777|gb|ADE83166.1| sensor histidine kinase [Prevotella ruminicola 23]
          Length = 501

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 23  PSIAIKELIENSL--DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            S  +  L+EN++    E+  +         G     + DNG G+   +      +   S
Sbjct: 390 LSNIVCNLLENAIKYSREAVTIRIDFLMREAGMVQISVADNGIGIAKADQRYVFDKFYRS 449


>gi|294146554|ref|YP_003559220.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292676971|dbj|BAI98488.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 532

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L EN+  A +SR++  +A   G ++    D+G G+   +         TSK
Sbjct: 439 LAENARQAGASRLDIGVALHQGAAWIDFADDGPGIPPGDRGRVFDLFFTSK 489


>gi|294677614|ref|YP_003578229.1| DNA topoisomerase IV subunit B [Rhodobacter capsulatus SB 1003]
 gi|3128305|gb|AAC16157.1| DNA gyrase subunit b [Rhodobacter capsulatus SB 1003]
 gi|294476434|gb|ADE85822.1| DNA topoisomerase IV, B subunit [Rhodobacter capsulatus SB 1003]
          Length = 652

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++R+E  +   G     + DNG G+  +
Sbjct: 48 VAEILDNAMDEAVAGHANRIEVEVNADG--SVTVRDNGRGIPVD 89


>gi|83311975|ref|YP_422239.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946816|dbj|BAE51680.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 560

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 30  LIENSL-----DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           L+EN+L     DA   ++E    +   G     + DNG G+         
Sbjct: 457 LLENALIYRKPDA-PPQIEIKATLEPKGLWLISVRDNGIGIEPAYFEKIF 505


>gi|150389387|ref|YP_001319436.1| hypothetical protein Amet_1598 [Alkaliphilus metalliredigens
          QYMF]
 gi|149949249|gb|ABR47777.1| hypothetical protein Amet_1598 [Alkaliphilus metalliredigens
          QYMF]
          Length = 543

 Score = 45.8 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAGG--GKSFFQITDNGFGMTSEEIP 69
          I  P   I+E I NS DA++  +  VI     GK   ++ D+G GM    I 
Sbjct: 21 IVNPLEVIREGISNSHDADAKHISIVIYRNKSGKFVLEMQDDGKGMNFNNIQ 72


>gi|308190314|ref|YP_003923245.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER]
 gi|319777710|ref|YP_004137361.1| DNA gyrase subunit b [Mycoplasma fermentans M64]
 gi|307625056|gb|ADN69361.1| DNA topoisomerase (ATP-hydrolyzing) [Mycoplasma fermentans JER]
 gi|318038785|gb|ADV34984.1| DNA gyrase subunit B [Mycoplasma fermentans M64]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +++VE  I   G  +  + DNG G+ 
Sbjct: 41 EIVDNSVDEAMAGFANKVEITITKDG--YIDVIDNGRGIP 78


>gi|238810228|dbj|BAH70018.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 644

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +++VE  I   G  +  + DNG G+ 
Sbjct: 45 EIVDNSVDEAMAGFANKVEITITKDG--YIDVIDNGRGIP 82


>gi|149191879|ref|ZP_01870113.1| DNA gyrase subunit B [Vibrio shilonii AK1]
 gi|148834271|gb|EDL51274.1| DNA gyrase subunit B [Vibrio shilonii AK1]
          Length = 805

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCNDIIVTIHED--NSVSVSDDGRGIPTEMHPEEQVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKVTLTIHRGGQIHTQTYHHGEPEAPLTVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+   F  + +   +++   +R ++     VS      K    K
Sbjct: 159 DTDKTGTEIRF----WPSEETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-IDKREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           M+     G     +  +            +  +             +N G     Y F N
Sbjct: 213 MDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEVAMQWNDGYQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|110003910|emb|CAK98250.1| dna gyrase subunit b protein [Spiroplasma citri]
          Length = 639

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 83/246 (33%), Gaps = 29/246 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQ-RH 75
           E+++NS+D   A  +++++ ++         + DNG G+  E         +       H
Sbjct: 41  EIVDNSIDEVLANFANKIKIILNKD--ESITVIDNGRGIPIEIHPKTKVSTLETVFTILH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K   +   I + G  G     + A+S  L +  R        +    G+ ++ ++ V
Sbjct: 99  AGGKFDSNTYKI-SGGLHGVGASVVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEV 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST----IK 190
                T   V      +P    F ++     + I + I+++      +  +        +
Sbjct: 158 GSTSETGTTVTF----LPDEKIFKETTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDE 213

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                  F +   ++   +++ IG    +       + N +   G      +N   +   
Sbjct: 214 EKTVLYQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVVEFGL----QYNDNYSENI 269

Query: 251 YVFING 256
           + F N 
Sbjct: 270 FSFCNN 275


>gi|87200102|ref|YP_497359.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans
          DSM 12444]
 gi|87135783|gb|ABD26525.1| DNA topoisomerase IV subunit B [Novosphingobium aromaticivorans
          DSM 12444]
          Length = 666

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 6/46 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          E+++N++D   A  ++R+E ++  G  +   I+DNG G+  +E P 
Sbjct: 54 EVLDNAMDEAVAGHANRIEVLLEEG--NRLTISDNGRGIPVDEHPK 97


>gi|15826870|ref|NP_301133.1| DNA gyrase subunit B [Mycobacterium leprae TN]
 gi|221229348|ref|YP_002502764.1| DNA gyrase subunit B [Mycobacterium leprae Br4923]
 gi|13638292|sp|Q59533|GYRB_MYCLE RecName: Full=DNA gyrase subunit B
 gi|13092417|emb|CAC29513.1| putative DNA gyrase subunit B [Mycobacterium leprae]
 gi|219932455|emb|CAR70098.1| putative DNA gyrase subunit B [Mycobacterium leprae Br4923]
          Length = 678

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  +++V+  +   G    ++ DNG G+        V  H T
Sbjct: 47 EVVDNSVDEAMAGYATQVDVRLFDDG--SVEVADNGRGIP-------VAVHAT 90


>gi|7437456|pir||T10005 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) - Mycobacterium
           leprae
 gi|1262356|emb|CAA94712.1| DNA gyrase B [Mycobacterium leprae]
          Length = 697

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 13/53 (24%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E+++NS+D   A  +++V+  +   G    ++ DNG G+        V  H T
Sbjct: 66  EVVDNSVDEAMAGYATQVDVRLFDDG--SVEVADNGRGIP-------VAVHAT 109


>gi|313112547|ref|ZP_07798211.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625129|gb|EFQ08420.1| DNA gyrase, B subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 572

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I        Q+TDNG G+  +
Sbjct: 53 VYEIVDNAIDEALAGYCDHIEVKILKDNI--IQVTDNGRGIPVD 94


>gi|300781943|ref|YP_003762234.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
 gi|299791457|gb|ADJ41832.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
          Length = 655

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
           ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 42  VQEVVDNSVDEAMAGHATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEQKPTLEVVLT 98

Query: 72  VQRHCTSKISDDFSNIH 88
           V  H   K   D   + 
Sbjct: 99  VL-HAGGKFDSDSYAVS 114


>gi|295103719|emb|CBL01263.1| DNA gyrase subunit B [Faecalibacterium prausnitzii SL3/3]
          Length = 664

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I        Q+TDNG G+  +
Sbjct: 53 VYEIVDNAIDEALAGYCDHIEVKILKDNI--IQVTDNGRGIPVD 94


>gi|258513372|ref|YP_003189594.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777077|gb|ACV60971.1| DNA gyrase, B subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 635

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   +TDNG G+  +
Sbjct: 43 VYEVVDNSIDEAMAGYCDHIEVFINED--NSITVTDNGRGIPVD 84


>gi|225348707|gb|ACN87315.1| DNA gyrase beta-subunit [Amycolatopsis umgeniensis]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 7  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEKKPTLEVVLT 63

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 64 VL-HAGGKFDSDSYAVS 79


>gi|194339119|gb|ACF49475.1| GyrB [Amycolatopsis vancoresmycina]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 4  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEQKPTLEVVLT 60

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 61 VL-HAGGKFDSDSYAVS 76


>gi|194339103|gb|ACF49467.1| GyrB [Amycolatopsis rifamycinica]
          Length = 460

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 3  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEQKPTLEVVLT 59

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 60 VL-HAGGKFDSDSYAVS 75


>gi|194339101|gb|ACF49466.1| GyrB [Amycolatopsis regifaucium]
          Length = 464

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 4  VQEVVDNSVDEAMAGHATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEKKPTLEVVLT 60

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 61 VL-HAGGKFDSDSYAVS 76


>gi|194339095|gb|ACF49463.1| GyrB [Amycolatopsis orientalis]
          Length = 463

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 2  VQEVVDNSVDEAMAGHATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEKKPTLEVVLT 58

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 59 VL-HAGGKFDSDSYAVS 74


>gi|194339085|gb|ACF49458.1| GyrB [Amycolatopsis mediterranei]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 4  VQEVVDNSVDEAMAGHATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEQKPTLEVVLT 60

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 61 VL-HAGGKFDSDSYAVS 76


>gi|194339083|gb|ACF49457.1| GyrB [Amycolatopsis lurida]
          Length = 460

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 3  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEMKPTLEVVLT 59

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 60 VL-HAGGKFDSDSYAVS 75


>gi|194339081|gb|ACF49456.1| GyrB [Amycolatopsis keratiniphila subsp. nogabecina]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 7  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDIHPKEQKPTLEVVLT 63

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 64 VL-HAGGKFDSDSYAVS 79


>gi|194339075|gb|ACF49453.1| GyrB [Amycolatopsis japonica]
          Length = 450

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 6  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEMKPTLEVVLT 62

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 63 VL-HAGGKFDSDSYAVS 78


>gi|194339065|gb|ACF49448.1| GyrB [Amycolatopsis decaplanina]
          Length = 456

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 2  VQEVVDNSVDEAMAGFATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEQKPTLEVVLT 58

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 59 VL-HAGGKFDSDSYAVS 74


>gi|194339059|gb|ACF49445.1| GyrB [Amycolatopsis azurea]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMA 71
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + 
Sbjct: 2  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDIHPKEQKPTLEVVLT 58

Query: 72 VQRHCTSKISDDFSNIH 88
          V  H   K   D   + 
Sbjct: 59 VL-HAGGKFDSDSYAVS 74


>gi|160944260|ref|ZP_02091489.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444442|gb|EDP21446.1| hypothetical protein FAEPRAM212_01769 [Faecalibacterium
          prausnitzii M21/2]
          Length = 664

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I        Q+TDNG G+  +
Sbjct: 53 VYEIVDNAIDEALAGYCDHIEVKILKDNI--IQVTDNGRGIPVD 94


>gi|153005239|ref|YP_001379564.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028812|gb|ABS26580.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 418

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 22  RPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L++N+ +A +  VE    A  G    ++ D+G G+         +   T
Sbjct: 313 RLRQVLSNLLQNAAEAGAGCVEIRGAARDGNVLLEVRDDGRGIDPAVRARLFEPFAT 369


>gi|256397316|ref|YP_003118880.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256363542|gb|ACU77039.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 30  LIENSL-----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++     D   +RV   +   G      +TD G G+   ++    +R  
Sbjct: 283 LVENAVNYSPDD---TRVAVTVKRTGDLVEISVTDQGIGIPERDLERIFERFY 332


>gi|229152978|ref|ZP_04281159.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228630398|gb|EEK87046.1| Sensor histidine kinase [Bacillus cereus m1550]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNAIEAMSVGGTITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|189502463|ref|YP_001958180.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
          5a2]
 gi|189497904|gb|ACE06451.1| hypothetical protein Aasi_1109 [Candidatus Amoebophilus asiaticus
          5a2]
          Length = 651

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I     +   ++DNG G+ ++
Sbjct: 47 EVVDNSIDEALAGYCTTIKVQIHSD--NSITVSDNGRGIPTD 86


>gi|157692515|ref|YP_001486977.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157681273|gb|ABV62417.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 467

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI N+L   DA+  ++   +     +   I DNG G+   E+     R+ 
Sbjct: 371 LILNALVHNDAD-VKIIVQLEQKDHTHITIQDNGKGIEEAELEKVFDRYY 419


>gi|330888464|gb|EGH21125.1| sensor histidine kinase [Pseudomonas syringae pv. mori str. 301020]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     S R+E  I     +    + DNG G+  E +        
Sbjct: 126 RLEQVLINLLRNALDAMRECPSRRLEVRIDTIDKQWRLSVKDNGTGIAEENLASIFDPFF 185

Query: 77  TSK 79
           T+K
Sbjct: 186 TTK 188


>gi|49473739|ref|YP_031781.1| two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
 gi|49239242|emb|CAF25562.1| Two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
          Length = 594

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 22  RPSIAIKELIENS---L--DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           R    I  LIEN+   +  D    ++   +     +    I DNG G+ SE I    +R 
Sbjct: 478 RLGQVISNLIENARSFIPHDNG--KIYITMKSHASTLILTIEDNGPGIRSENIERIFERF 535

Query: 76  CTSKISDDFSNIHTFG 91
            T + S+D     TFG
Sbjct: 536 YTDRPSED-----TFG 546


>gi|88798536|ref|ZP_01114120.1| DNA gyrase subunit B [Reinekea sp. MED297]
 gi|88778636|gb|EAR09827.1| DNA gyrase subunit B [Reinekea sp. MED297]
          Length = 804

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 77/251 (30%), Gaps = 33/251 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I         + DNG G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCSEITVTIHPN--ESVSVEDNGRGIPTEIHEEEGRSAAEVILTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMS--RPPQNNTGAQIAISGEKISS 130
              K  D+   + + G  G  +  + A+S    LT+    +  + +    + +   K+  
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSAELKLTIRRGGKVHEQDYSHGVPVEPLKVVG 158

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
                    T +     F  I          +   +++   +R ++     V+      +
Sbjct: 159 DADTTGTKITFLPSSGTFANI----------KYSYDILAKRLRELSFLNSGVAIRLKDER 208

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           + +         G     ++ +       N V       E    G      +N       
Sbjct: 209 TAQEDYFHY--EGGLKAFVTYLNRNKQTLNEVFHFSFEREEDGIGVEVALQWNDSYQENI 266

Query: 251 YVFINGRTVQD 261
           + + N    +D
Sbjct: 267 FSYTNNIPQRD 277


>gi|304320371|ref|YP_003854014.1| sensor histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303299273|gb|ADM08872.1| sensor histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 585

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 23  PSIAIKELIENSL----DAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               ++ L++N+L    +  + R+  V+    GG  +   + D G G+  E +    +R 
Sbjct: 465 LGQVLRNLMDNALSFSPEGGAVRISLVVEAREGGQLAILSVEDEGPGIPEENLESIFERF 524

Query: 76  CT 77
            T
Sbjct: 525 YT 526


>gi|295398131|ref|ZP_06808180.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
           ATCC 11563]
 gi|294973650|gb|EFG49428.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aerococcus viridans
           ATCC 11563]
          Length = 689

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 96  EIVDNSIDEALAGFAGHIQVTIEKD--NSITVVDDGRGIPVD 135


>gi|254486692|ref|ZP_05099897.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101]
 gi|214043561|gb|EEB84199.1| DNA topoisomerase IV, B subunit [Roseobacter sp. GAI101]
          Length = 653

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+ ++
Sbjct: 49 VAEIIDNSMDEAVAGHATWIELELHENG--HVTVRDNGRGIPTD 90


>gi|194228180|ref|XP_001915527.1| PREDICTED: MORC family CW-type zinc finger 4 [Equus caballus]
          Length = 857

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 21 ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           RP  A+ EL++N++D +  +  V   +     KS    TD+G GMT  ++   +    T
Sbjct: 14 TRP-SAVAELLDNAVDPDVSARTVFIDVEEVKNKSCLTFTDDGCGMTPHKLHRMLSFGFT 72

Query: 78 SK 79
           K
Sbjct: 73 DK 74


>gi|83942882|ref|ZP_00955342.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36]
 gi|83845890|gb|EAP83767.1| DNA topoisomerase IV, B subunit [Sulfitobacter sp. EE-36]
          Length = 653

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+ ++
Sbjct: 49 VAEIIDNSMDEAVAGHATWIELELHENG--HVTVRDNGRGIPTD 90


>gi|83954053|ref|ZP_00962773.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
 gi|83841090|gb|EAP80260.1| DNA topoisomerase IV subunit B [Sulfitobacter sp. NAS-14.1]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +   G     + DNG G+ ++
Sbjct: 49 VAEIIDNSMDEAVAGHATWIELELHENG--HVTVRDNGRGIPTD 90


>gi|319937318|ref|ZP_08011725.1| hypothetical protein HMPREF9488_02560 [Coprobacillus sp. 29_1]
 gi|319807684|gb|EFW04277.1| hypothetical protein HMPREF9488_02560 [Coprobacillus sp. 29_1]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)

Query: 33 NSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          NS+ A +S +   I            I DNG GM  E +   +    T
Sbjct: 14 NSIRAHASMIYIQIVDSVENNIIDISIKDNGHGMDKETVEKVIDPFYT 61


>gi|229099920|ref|ZP_04230843.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
 gi|229118983|ref|ZP_04248328.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
 gi|228664508|gb|EEL20004.1| DNA gyrase subunit B [Bacillus cereus Rock1-3]
 gi|228683535|gb|EEL37490.1| DNA gyrase subunit B [Bacillus cereus Rock3-29]
 gi|326937802|gb|AEA13698.1| DNA gyrase subunit B [Bacillus thuringiensis serovar chinensis
          CT-43]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 84


>gi|229164444|ref|ZP_04292372.1| DNA gyrase subunit B [Bacillus cereus R309803]
 gi|228619049|gb|EEK75947.1| DNA gyrase subunit B [Bacillus cereus R309803]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 84


>gi|190710611|gb|ACE95136.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710609|gb|ACE95135.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710601|gb|ACE95131.1| gyrase subunit B [Bacillus thuringiensis serovar neoleonensis]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710597|gb|ACE95129.1| gyrase subunit B [Bacillus thuringiensis serovar morrisoni]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710589|gb|ACE95125.1| gyrase subunit B [Bacillus thuringiensis serovar darmstadiensis]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710581|gb|ACE95121.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710569|gb|ACE95115.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710567|gb|ACE95114.1| gyrase subunit B [Bacillus thuringiensis serovar toumanoffi]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710553|gb|ACE95107.1| gyrase subunit B [Bacillus thuringiensis serovar kyushuensis]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710551|gb|ACE95106.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
 gi|190710565|gb|ACE95113.1| gyrase subunit B [Bacillus thuringiensis serovar sumiyoshiensis]
 gi|190710591|gb|ACE95126.1| gyrase subunit B [Bacillus thuringiensis serovar sotto]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|190710547|gb|ACE95104.1| gyrase subunit B [Bacillus thuringiensis serovar alesti]
          Length = 627

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145577993|gb|ABP82715.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar alesti]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145577981|gb|ABP82709.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar seoulensis]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145578001|gb|ABP82719.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar shandongiensis]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145577987|gb|ABP82712.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar wratislaviensis]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145578015|gb|ABP82726.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar ostriniae]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145578023|gb|ABP82730.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar fukuokaensis]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145578017|gb|ABP82727.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar tohokuensis]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|145577983|gb|ABP82710.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar sotto]
          Length = 632

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|307352229|ref|YP_003893280.1| multi-sensor hybrid histidine kinase [Methanoplanus petrolearius
           DSM 11571]
 gi|307155462|gb|ADN34842.1| multi-sensor hybrid histidine kinase [Methanoplanus petrolearius
           DSM 11571]
          Length = 1048

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 23/81 (28%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDAESS--RVETVIAGGGKSF------------FQITD 58
           QI   ++IE        L+ NS+ A +    +       G                 + D
Sbjct: 786 QI--SQVIEN-------LVINSIQAMADGGNIYVQARNAGVISGKDGLEDGKYIVISVRD 836

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
           +G G+  E        + T+K
Sbjct: 837 DGSGIPEEYREKIFDPYFTTK 857


>gi|301168536|emb|CBW28126.1| putative alkaline phosphatase synthesis sensor protein
           [Bacteriovorax marinus SJ]
          Length = 630

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AE-SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++  +   S V        +  +  I+DNG G+  E++    ++  
Sbjct: 531 LVENAIKYSGEGSEVNVKTWDDEQWVYITISDNGVGIPPEDLEYVFEKFY 580


>gi|283850505|ref|ZP_06367793.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574076|gb|EFC22048.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 836

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 23  PSIAIKELIENSLDA---ESSRVETVIAGGGKS----FFQITDNGFGMTSEEIPMAVQRH 75
               +  L+ N+LDA   ++  +    AG G      + ++ DNG G+  E+ P      
Sbjct: 722 LEQVLSNLLLNALDAVTPDAGEIVLE-AGAGPDDRTVYLRVADNGPGIAPEDAPRIFDPF 780

Query: 76  CTSK 79
            T+K
Sbjct: 781 FTTK 784


>gi|260891935|ref|YP_003238032.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
 gi|260864076|gb|ACX51182.1| DNA gyrase, B subunit [Ammonifex degensii KC4]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E VI     +   + DNG G+  +
Sbjct: 45 VYEVVDNSIDEALAGFCTEIEVVIKQD--NSVLVKDNGRGIPVD 86


>gi|257062759|ref|YP_003142431.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
 gi|256790412|gb|ACV21082.1| DNA gyrase subunit B [Slackia heliotrinireducens DSM 20476]
          Length = 648

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   ++++ +I     +   + DNG G+  E
Sbjct: 43 VYEVVDNAVDEALAGYCTKIDVIIHED--NSITVIDNGRGIPVE 84


>gi|228942642|ref|ZP_04105174.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner
          ATCC 10792]
 gi|228975572|ref|ZP_04136124.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228982208|ref|ZP_04142497.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
 gi|228777560|gb|EEM25838.1| DNA gyrase subunit B [Bacillus thuringiensis Bt407]
 gi|228784182|gb|EEM32209.1| DNA gyrase subunit B [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228817068|gb|EEM63161.1| DNA gyrase subunit B [Bacillus thuringiensis serovar berliner
          ATCC 10792]
          Length = 642

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 49 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 86


>gi|218895146|ref|YP_002443557.1| DNA gyrase, B subunit [Bacillus cereus G9842]
 gi|228905437|ref|ZP_04069392.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
 gi|228968646|ref|ZP_04129629.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|218542098|gb|ACK94492.1| DNA gyrase, B subunit [Bacillus cereus G9842]
 gi|228791075|gb|EEM38693.1| DNA gyrase subunit B [Bacillus thuringiensis serovar sotto str.
          T04001]
 gi|228854257|gb|EEM98960.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 4222]
          Length = 640

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 84


>gi|23978233|dbj|BAC21112.1| DNA gyrase B subunit [Anabaenopsis circularis]
          Length = 398

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 12 VYEVVDNSVDEALAGYCTHIEIEINADG--SVSVTDDGRGIPTD 53


>gi|308235537|ref|ZP_07666274.1| DNA gyrase subunit B [Gardnerella vaginalis ATCC 14018]
 gi|311114018|ref|YP_003985239.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
 gi|310945512|gb|ADP38216.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
           vaginalis ATCC 14019]
          Length = 691

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A  +S +E  I     +  ++ D+G G+  +E+P
Sbjct: 66  VYEIVDNSVDEALAGYASHIEVTILPD--NAIKVVDDGRGIPVDEVP 110


>gi|167839125|ref|ZP_02465902.1| sensor histidine kinase [Burkholderia thailandensis MSMB43]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A + RV+    +   G    Q+ DNG G+ + +     +R  
Sbjct: 355 LVDNAIRYAGAGA-RVDVEARVDADGAPALQVRDNGPGIPAADRERVWERFY 405


>gi|297618880|ref|YP_003706985.1| DNA topoisomerase VI subunit B [Methanococcus voltae A3]
 gi|297377857|gb|ADI36012.1| DNA topoisomerase VI, B subunit [Methanococcus voltae A3]
          Length = 658

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR-HC 76
             I EL+ NS+DA  E+     +   I   G  +    + DNG G+  + +P    +   
Sbjct: 38  TIIHELVTNSMDACEEAEILPDINVTIERLGNEYYKLIVEDNGSGIPPKYVPKVFGKMLA 97

Query: 77  TSKISDDFSNIHTFGFRGEALPSIGAV-----SHLT------LMSRPPQN 115
            SK+      I + G +G     IGA      S +T      + +     
Sbjct: 98  GSKLH---RQIQSRGQQG-----IGAAGVLLFSQMTTGKPLKITTSTGDG 139


>gi|115381182|gb|ABI96240.1| DNA topoisomerase IV subunit B [Spiroplasma gladiatoris]
          Length = 552

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +  VI   G     + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGFCDEINVVIEKDG--SITVKDNGRGVP 51


>gi|148244667|ref|YP_001219361.1| DNA topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326494|dbj|BAF61637.1| topoisomerase IV subunit B [Candidatus Vesicomyosocius okutanii HA]
          Length = 626

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 35/200 (17%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM------ 70
           E P+   +E+I+NS+D   A  +S++  V+     +   + D+G GM  +  P       
Sbjct: 29  ECPNHLAQEVIDNSVDEAIAGFASKINVVLYKN--NSLSVEDDGRGMPVDIHPKEGKSGV 86

Query: 71  ---AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
                + H   K S+D     + G  G  +  + A+S L  +                 K
Sbjct: 87  EVILTKLHAGGKFSNDLYQ-FSGGLHGVGISVVNALSTLVEI-----------WIKRDAK 134

Query: 128 ISSVRPVAMNPGTIVEVRDLF--FTIPARLNFLK------SEQVETNLITDVIRRMAIAY 179
              +     +  T ++V      +     + F        + +     + + +R  A+  
Sbjct: 135 EHHITFSNGSKKTELKVTRKVSKYNTGTIVKFKPDARFFDNIKFSATKLHNNLRSKAVLC 194

Query: 180 PKVSFTFSTIKSNRYKMNFQ 199
           P +   F    + +      
Sbjct: 195 PDLEINFYNEINEKTDKWIY 214


>gi|15643596|ref|NP_228642.1| DNA gyrase, subunit B [Thermotoga maritima MSB8]
 gi|6831559|sp|P77993|GYRB_THEMA RecName: Full=DNA gyrase subunit B; AltName: Full=Topoisomerase II
           subunit B
 gi|4981365|gb|AAD35915.1|AE001750_9 DNA gyrase, subunit B [Thermotoga maritima MSB8]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++     
Sbjct: 38  VYEVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTV 95

Query: 74  RHCTSKISDDFSNIH 88
            H   K S D   I 
Sbjct: 96  LHAGGKFSKDSYKIS 110


>gi|307331912|ref|ZP_07611008.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882430|gb|EFN13520.1| DNA gyrase, B subunit [Streptomyces violaceusniger Tu 4113]
          Length = 676

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  +E  I A GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEAMAGHADSIEVTILADGG---VRVVDNGRGIP 106


>gi|293391260|ref|ZP_06635594.1| ATPase family protein [Aggregatibacter actinomycetemcomitans
          D7S-1]
 gi|290951794|gb|EFE01913.1| ATPase family protein [Aggregatibacter actinomycetemcomitans
          D7S-1]
          Length = 622

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 29 ELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTS 65
          E I N+LDA+++ +   I       S F+I DNG G+  
Sbjct: 24 EAIANALDADATEITIDINYNNSEFSSFKIIDNGVGIDE 62


>gi|261252013|ref|ZP_05944587.1| hypothetical protein VIA_002036 [Vibrio orientalis CIP 102891]
 gi|260938886|gb|EEX94874.1| hypothetical protein VIA_002036 [Vibrio orientalis CIP 102891]
          Length = 609

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA--ESSR----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  LI N++DA  + S     V    A    +   + DNG G+ +E+IP      
Sbjct: 503 RLEQVLVNLISNAIDAVEQCSEPLIVVCVECADNEVT-IAVKDNGKGIIAEDIPHIFDPF 561

Query: 76  CTSK 79
            T K
Sbjct: 562 YTQK 565


>gi|281411537|ref|YP_003345616.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
 gi|281372640|gb|ADA66202.1| DNA gyrase, B subunit [Thermotoga naphthophila RKU-10]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++     
Sbjct: 38  VYEVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTV 95

Query: 74  RHCTSKISDDFSNIH 88
            H   K S D   I 
Sbjct: 96  LHAGGKFSKDSYKIS 110


>gi|238755475|ref|ZP_04616815.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473]
 gi|238706316|gb|EEP98693.1| DNA topoisomerase 4 subunit B [Yersinia ruckeri ATCC 29473]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 69/208 (33%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    I
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAI 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            +   R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELIFCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVNVRRDGQVYSMAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +       +F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQDLQVIGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDLLNNTEQRWCYADGLTDYLMEAVNGL 231


>gi|242280002|ref|YP_002992131.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242122896|gb|ACS80592.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 548

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 30  LIENSLDA-------ESS---RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L++NS+ A        +    R+   +    G    +I DNG GM+ E    A++   T+
Sbjct: 443 LLKNSVQAILADQGRGADDIARITIRLRKEPGFIRLEIEDNGPGMSPETRKKALEPFFTT 502

Query: 79  K 79
           K
Sbjct: 503 K 503


>gi|212633643|ref|YP_002310168.1| DNA topoisomerase IV subunit B [Shewanella piezotolerans WP3]
 gi|212555127|gb|ACJ27581.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3]
          Length = 631

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 37/200 (18%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +SR++ ++     +  ++TD+G GM      EE    + 
Sbjct: 34  RPNHLGQEVIDNSVDEALAGHASRIDVILHAD--NSLEVTDDGRGMPVDIHPEEGIPGVE 91

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQN--NTGAQ 120
           + + + H   K S+      + G  G       AL S      + +  R      +   +
Sbjct: 92  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSS-----RVEITVRRNAEVYDMAFE 145

Query: 121 IAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                E +         N GT V             ++  S       ++ +++  A+  
Sbjct: 146 HGEKVEDLRVTGTCGRRNTGTRVHFW-------PDASYFDSGNFSITKLSYLLKAKAVLC 198

Query: 180 PKVSFTFSTIKSNRYKMNFQ 199
           P +   F   ++N  +  F 
Sbjct: 199 PGLRIKFVNKQTNETQEWFY 218


>gi|254410831|ref|ZP_05024609.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196182186|gb|EDX77172.1| DNA gyrase, B subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 856

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E      G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDFNSDG--SVSVTDDGRGIPTD 80


>gi|170287901|ref|YP_001738139.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
 gi|170175404|gb|ACB08456.1| DNA gyrase, B subunit [Thermotoga sp. RQ2]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++     
Sbjct: 38  VYEVVDNSVDEVLAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTV 95

Query: 74  RHCTSKISDDFSNIH 88
            H   K S D   I 
Sbjct: 96  LHAGGKFSKDSYKIS 110


>gi|147779566|emb|CAN61157.1| hypothetical protein VITISV_001714 [Vitis vinifera]
          Length = 793

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
           F   R V+   +   I   YA T+P    P + + + +    VDVN+HP K  +   N  
Sbjct: 683 FSPDRLVECTALKRAIEIVYAATLPKASKPFIYMSIVLPSEHVDVNIHPTKREVSLLNQE 742

Query: 313 IIRNFIIQSIQKAINKKG 330
            I   I  + +  +    
Sbjct: 743 AIVEKIQSAFESKLRNSN 760


>gi|148269239|ref|YP_001243699.1| DNA gyrase, B subunit [Thermotoga petrophila RKU-1]
 gi|147734783|gb|ABQ46123.1| DNA gyrase subunit B [Thermotoga petrophila RKU-1]
          Length = 636

 Score = 45.8 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++     
Sbjct: 38  VYEVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTV 95

Query: 74  RHCTSKISDDFSNIH 88
            H   K S D   I 
Sbjct: 96  LHAGGKFSKDSYKIS 110


>gi|332968173|gb|EGK07254.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Psychrobacter sp.
          1501(2011)]
          Length = 629

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  ++  +   G     + D+G GM ++
Sbjct: 29 TRPNHLAQEVIDNSVDEALAGHAKTIKVQLHEDG--SLSVEDDGRGMPTD 76


>gi|312134087|ref|YP_004001425.1| DNA gyrase subunit B [Caldicellulosiruptor owensensis OL]
 gi|311774138|gb|ADQ03625.1| DNA gyrase, B subunit [Caldicellulosiruptor owensensis OL]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI  G  +   + D+G G+  +
Sbjct: 45 VYEIVDNAIDEAMAGFCKNIEVVIHKG--NSVTVIDDGRGIPVD 86


>gi|228911333|ref|ZP_04075137.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
 gi|228848351|gb|EEM93201.1| DNA gyrase subunit B [Bacillus thuringiensis IBL 200]
          Length = 642

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 49 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 86


>gi|229015410|ref|ZP_04172416.1| DNA gyrase subunit B [Bacillus cereus AH1273]
 gi|229026934|ref|ZP_04183257.1| DNA gyrase subunit B [Bacillus cereus AH1272]
 gi|228734392|gb|EEL85063.1| DNA gyrase subunit B [Bacillus cereus AH1272]
 gi|228745889|gb|EEL95885.1| DNA gyrase subunit B [Bacillus cereus AH1273]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 84


>gi|254465097|ref|ZP_05078508.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
 gi|206686005|gb|EDZ46487.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
          Length = 590

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE ++A G  +   + DNG G+  ++     +  
Sbjct: 480 RLEQVMVNLLRNALDA--TKSVADPEVEILLAAGETATLSVRDNGVGI--KDFDNLFEPF 535

Query: 76  CTSK 79
            T+K
Sbjct: 536 YTTK 539


>gi|1622792|gb|AAC44498.1| DNA topoisomerase II subunit B [Thermotoga maritima MSB8]
          Length = 636

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++     
Sbjct: 38  VYEVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTV 95

Query: 74  RHCTSKISDDFSNIH 88
            H   K S D   I 
Sbjct: 96  LHAGGKFSKDSYKIS 110


>gi|56961788|ref|YP_173510.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
 gi|56908022|dbj|BAD62549.1| DNA gyrase subunit B [Bacillus clausii KSM-K16]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     ++  I  G  +   + DNG G+ 
Sbjct: 46 EIVDNSIDEAMAGFCDEIKVTIEEG--NALTVEDNGRGIP 83


>gi|88812692|ref|ZP_01127939.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231]
 gi|88790108|gb|EAR21228.1| DNA topoisomerase IV, B subunit [Nitrococcus mobilis Nb-231]
          Length = 630

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 33/187 (17%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+N +D   A  + R+E V+   G     ++DNG GM      EE    +
Sbjct: 30  TRPNHLAREVIDNGVDEALAGFADRIEVVLHYDG--SLSVSDNGRGMPVDLHPEEGLPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-------HLTLMSRPPQNNTGAQ 120
            + + R H   K S      H++ F G  L  +G VS        L +  R        +
Sbjct: 88  ELILSRLHAGGKFSQ-----HSYQFSG-GLHGVG-VSVVNALSRRLEVTIRRDGQQ--WR 138

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
           +     +  S   +       VE        P    +  S +     +   +R  A+  P
Sbjct: 139 MHFVEGEKCSELELIG-ALNKVETGTTLRFWPDAR-YFDSPRFSVPRLQYALRAKAVLCP 196

Query: 181 KVSFTFS 187
            +   F 
Sbjct: 197 GLRVRFY 203


>gi|75761791|ref|ZP_00741726.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
 gi|74490724|gb|EAO54005.1| DNA gyrase subunit B [Bacillus thuringiensis serovar israelensis
          ATCC 35646]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 52 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 89


>gi|242279327|ref|YP_002991456.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122221|gb|ACS79917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 557

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 30  LIENSLDA-----ESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           L+ N++ A      S   E VI       G +  ++ DNG G+  +++        ++K 
Sbjct: 455 LLNNAIHAVVDEHGSENGEIVIAAGQDQNGNALIKVCDNGVGIHEKDMERIFLPFYSTKK 514

Query: 81  SDD 83
           + D
Sbjct: 515 NSD 517


>gi|240171858|ref|ZP_04750517.1| heat shock protein 90 [Mycobacterium kansasii ATCC 12478]
          Length = 647

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 47/161 (29%)

Query: 25  IAIKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSE 66
             ++ELI N+ DA               +      ++  +  G ++   + DNG GMT +
Sbjct: 31  SFLRELISNASDALDKLRLEALRNKELNADTSDLHIQLEVDKGARTL-TVRDNGIGMTRD 89

Query: 67  ---EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPS---IGA----------VS-HLTLM 109
              ++   + +  T+++              +AL S   IG           V+  + L+
Sbjct: 90  EVVDLIGTLAKSGTAELRQQLREAK------DALASEELIGQFGIGFYSSFMVADKVELL 143

Query: 110 SRPPQNNTGAQIAIS-----GEKISSVRPVAMNPGTIVEVR 145
           +R    +   +   S       +           GT V + 
Sbjct: 144 TRKAGESEATRWESSGDGTYTIESVDSSTAGATQGTSVTLH 184


>gi|255038730|ref|YP_003089351.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053]
 gi|254951486|gb|ACT96186.1| DNA gyrase, B subunit [Dyadobacter fermentans DSM 18053]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   +     +   + DNG G+ 
Sbjct: 48 EVVDNSIDEAMAGYCDTINVTVEKN--NSITVKDNGRGIP 85


>gi|205371907|ref|ZP_03224727.1| DNA gyrase subunit B [Bacillus coahuilensis m4-4]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +  VI     +   +TDNG G+ 
Sbjct: 49 EIVDNSIDEALAGHCDEINVVIEKD--NSITVTDNGRGIP 86


>gi|254441649|ref|ZP_05055142.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307]
 gi|198251727|gb|EDY76042.1| DNA topoisomerase IV, B subunit [Octadecabacter antarcticus 307]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  +   G +   + DNG G+ 
Sbjct: 48 VAEIVDNSMDEAVAGHATWIEVELHANGHA--TVRDNGRGIP 87


>gi|187777362|ref|ZP_02993835.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
          15579]
 gi|187774290|gb|EDU38092.1| hypothetical protein CLOSPO_00918 [Clostridium sporogenes ATCC
          15579]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|168183732|ref|ZP_02618396.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
 gi|237793326|ref|YP_002860878.1| DNA gyrase subunit B [Clostridium botulinum Ba4 str. 657]
 gi|182673147|gb|EDT85108.1| DNA gyrase, B subunit [Clostridium botulinum Bf]
 gi|229263377|gb|ACQ54410.1| DNA gyrase, B subunit [Clostridium botulinum Ba4 str. 657]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|126737542|ref|ZP_01753272.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. SK209-2-6]
 gi|126720935|gb|EBA17639.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. SK209-2-6]
          Length = 559

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 22  RPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+LDA  ++      VE ++A G  +   + DNG G+  E+        
Sbjct: 449 RLEQVMVNLLRNALDA--TKSVDDPEVEILLAAGETATLTVRDNGIGI--EDFGSLFDPF 504

Query: 76  CTSK 79
            T+K
Sbjct: 505 YTTK 508


>gi|78356727|ref|YP_388176.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219132|gb|ABB38481.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 581

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 25  IAIKELIENSLDA------ESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+  L+ NSLDA       + +V+    +A  G   F + D   GMT E+   A +   
Sbjct: 462 QAVLNLVLNSLDALKETDGGARQVDVASGLAKDGVWLF-VRDTANGMTKEQAEQAFEPFY 520

Query: 77  TSK 79
           T+K
Sbjct: 521 TTK 523


>gi|14520810|ref|NP_126285.1| DNA topoisomerase VI subunit B [Pyrococcus abyssi GE5]
 gi|13124623|sp|Q9V135|TOP6B_PYRAB RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|5458026|emb|CAB49516.1| Top6B DNA topoisomerase VI, subunit B [Pyrococcus abyssi GE5]
          Length = 564

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I E + NSLDA  E+     +   I   GK      + DNG G+  E IP   
Sbjct: 33 IRSLTTIIHEAVTNSLDACEEAGILPYIRVEIEELGKEHYKVIVEDNGPGIPEEYIPHVF 92


>gi|329944735|ref|ZP_08292814.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529871|gb|EGF56761.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  I A GG    +++DNG G+  +E P
Sbjct: 46 VYEVVDNSVDEALAGYCDHIEVTILADGG---VRVSDNGRGIPVDEHP 90


>gi|325066318|ref|ZP_08124991.1| DNA gyrase subunit B [Actinomyces oris K20]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  I A GG    +++DNG G+  +E P
Sbjct: 46 VYEVVDNSVDEALAGYCDHIEVTILADGG---VRVSDNGRGIPVDEHP 90


>gi|320533167|ref|ZP_08033889.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134627|gb|EFW26853.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  I A GG    +++DNG G+  +E P
Sbjct: 46 VYEVVDNSVDEALAGYCDHIEVTILADGG---VRVSDNGRGIPVDEHP 90


>gi|326772839|ref|ZP_08232123.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
 gi|326637471|gb|EGE38373.1| DNA gyrase, B subunit [Actinomyces viscosus C505]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  I A GG    +++DNG G+  +E P
Sbjct: 46 VYEVVDNSVDEALAGYCDHIEVTILADGG---VRVSDNGRGIPVDEHP 90


>gi|218264667|ref|ZP_03478430.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii
          DSM 18315]
 gi|218221854|gb|EEC94504.1| hypothetical protein PRABACTJOHN_04139 [Parabacteroides johnsonii
          DSM 18315]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   ++V+ VI     +   +TD+G G+  +
Sbjct: 46 VYEVVDNSIDEALAGFCTQVDVVINED--NSISVTDDGRGIPVD 87


>gi|170756292|ref|YP_001779632.1| DNA gyrase subunit B [Clostridium botulinum B1 str. Okra]
 gi|169121504|gb|ACA45340.1| DNA gyrase, B subunit [Clostridium botulinum B1 str. Okra]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|154491922|ref|ZP_02031548.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC
          43184]
 gi|154088163|gb|EDN87208.1| hypothetical protein PARMER_01552 [Parabacteroides merdae ATCC
          43184]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   ++V+ VI     +   +TD+G G+  +
Sbjct: 46 VYEVVDNSIDEALAGFCTQVDVVINED--NSISVTDDGRGIPVD 87


>gi|153939432|ref|YP_001389375.1| DNA gyrase subunit B [Clostridium botulinum F str. Langeland]
 gi|152935328|gb|ABS40826.1| DNA gyrase, B subunit [Clostridium botulinum F str. Langeland]
 gi|295317482|gb|ADF97859.1| DNA gyrase, B subunit [Clostridium botulinum F str. 230613]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|148378017|ref|YP_001252558.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 3502]
 gi|153931278|ref|YP_001382416.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 19397]
 gi|153936801|ref|YP_001385968.1| DNA gyrase subunit B [Clostridium botulinum A str. Hall]
 gi|148287501|emb|CAL81560.1| DNA gyrase subunit B [Clostridium botulinum A str. ATCC 3502]
 gi|152927322|gb|ABS32822.1| DNA gyrase, B subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152932715|gb|ABS38214.1| DNA gyrase, B subunit [Clostridium botulinum A str. Hall]
 gi|322804284|emb|CBZ01834.1| DNA gyrase subunit B [Clostridium botulinum H04402 065]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|19909679|dbj|BAB87035.1| DNA gyrase subunit B [Thermotoga sp. KU10]
          Length = 446

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
          E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++      H
Sbjct: 1  EVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTVLH 58

Query: 76 CTSKISDDFSNIH 88
             K S D   I 
Sbjct: 59 AGGKFSKDSYKIS 71


>gi|19909675|dbj|BAB87033.1| DNA gyrase subunit B [Thermotoga sp. KU1]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
          E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++      H
Sbjct: 2  EVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTVLH 59

Query: 76 CTSKISDDFSNIH 88
             K S D   I 
Sbjct: 60 AGGKFSKDSYKIS 72


>gi|19909681|dbj|BAB87036.1| DNA gyrase subunit B [Thermotoga sp. KU11]
          Length = 444

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
          E+++NS+D   A     +   +   G    ++ DNG G+      EE   A++      H
Sbjct: 1  EVVDNSVDEALAGYCDWIRVTLHEDG--SVEVEDNGRGIPVDIHPEEGRSALEVVFTVLH 58

Query: 76 CTSKISDDFSNIH 88
             K S D   I 
Sbjct: 59 AGGKFSKDSYKIS 71


>gi|329923566|ref|ZP_08279028.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328941209|gb|EGG37507.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 581

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 12/56 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV-----QRH 75
           L+ENSL     D    R+E V+    +   +I DNG G++ E+I   +     +RH
Sbjct: 478 LVENSLYHGLDDNG--RIEVVVRKNDRLEIEIRDNGGGISEEKIEALLEQEQTERH 531


>gi|329954160|ref|ZP_08295255.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
 gi|328528137|gb|EGF55117.1| DNA gyrase, B subunit [Bacteroides clarus YIT 12056]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|329964535|ref|ZP_08301589.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057]
 gi|328524935|gb|EGF51987.1| DNA gyrase, B subunit [Bacteroides fluxus YIT 12057]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEAMAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|323705242|ref|ZP_08116817.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535144|gb|EGB24920.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 41  RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            ++  +   G  +   ++DNG G+  E++P   +R   S
Sbjct: 366 NIKVKLYNEGQFAVITVSDNGIGIPKEDLPFIYERFYRS 404


>gi|319900374|ref|YP_004160102.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
 gi|319415405|gb|ADV42516.1| DNA gyrase subunit B [Bacteroides helcogenes P 36-108]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEAMAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|317478438|ref|ZP_07937599.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
 gi|316905397|gb|EFV27190.1| DNA gyrase, subunit B [Bacteroides sp. 4_1_36]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|311337327|gb|ADP89913.1| DNA gyrase subunit B [Amycolatopsis ultiminotia]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 8  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 49


>gi|311337323|gb|ADP89911.1| DNA gyrase subunit B [Amycolatopsis sp. SE(8)3]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 2  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 43


>gi|311337321|gb|ADP89910.1| DNA gyrase subunit B [Amycolatopsis sp. S3.6]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 4  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 45


>gi|311337319|gb|ADP89909.1| DNA gyrase subunit B [Amycolatopsis sp. S1.3]
          Length = 461

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 1  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 42


>gi|311032261|ref|ZP_07710351.1| DNA gyrase subunit B [Bacillus sp. m3-13]
          Length = 636

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +  ++     +   + DNG G+ 
Sbjct: 42 EIVDNSIDEALAGYCSEINVIVEKD--NSITVKDNGRGIP 79


>gi|257838320|gb|ACV71150.1| gyrase B [Bacteroides vulgatus]
          Length = 457

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 2  VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 43


>gi|257838316|gb|ACV71148.1| gyrase B [Bacteroides sartorii]
          Length = 457

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 2  VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 43


>gi|302531361|ref|ZP_07283703.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
 gi|302440256|gb|EFL12072.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
          Length = 655

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 42 VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 83


>gi|224536623|ref|ZP_03677162.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521714|gb|EEF90819.1| hypothetical protein BACCELL_01499 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|218131840|ref|ZP_03460644.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM
          20697]
 gi|317474545|ref|ZP_07933819.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
 gi|217986143|gb|EEC52482.1| hypothetical protein BACEGG_03461 [Bacteroides eggerthii DSM
          20697]
 gi|316909226|gb|EFV30906.1| DNA gyrase, subunit B [Bacteroides eggerthii 1_2_48FAA]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|212692798|ref|ZP_03300926.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
 gi|237709487|ref|ZP_04539968.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724917|ref|ZP_04555398.1| DNA gyrase B subunit [Bacteroides sp. D4]
 gi|265754693|ref|ZP_06089745.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
 gi|212664587|gb|EEB25159.1| hypothetical protein BACDOR_02296 [Bacteroides dorei DSM 17855]
 gi|229436655|gb|EEO46732.1| DNA gyrase B subunit [Bacteroides dorei 5_1_36/D4]
 gi|229456543|gb|EEO62264.1| DNA gyrase B subunit [Bacteroides sp. 9_1_42FAA]
 gi|263234807|gb|EEZ20375.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_33FAA]
          Length = 654

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|212716669|ref|ZP_03324797.1| hypothetical protein BIFCAT_01602 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660373|gb|EEB20948.1| hypothetical protein BIFCAT_01602 [Bifidobacterium catenulatum DSM
           16992]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 25  IAIKELIENSLDAES--SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN+++     + V   +  G GK   ++ D G G+    +    +R  
Sbjct: 319 TAVKNLVENAINYSPEHTTVAVGVGSGDGKVSIRVVDQGIGIPESSLDRIFERFY 373


>gi|194339111|gb|ACF49471.1| GyrB [Amycolatopsis sulphurea]
          Length = 464

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 3  VQEVVDNSVDEAMAGFATKVEVTLLADGG---VRVVDDGRGIPVD 44


>gi|194339105|gb|ACF49468.1| GyrB [Amycolatopsis rubida]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 4  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 45


>gi|194339093|gb|ACF49462.1| GyrB [Amycolatopsis niigatensis]
          Length = 448

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 4  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 45


>gi|194339077|gb|ACF49454.1| GyrB [Amycolatopsis jejuensis]
          Length = 436

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 2  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 43


>gi|194339073|gb|ACF49452.1| GyrB [Amycolatopsis halotolerans]
          Length = 466

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 5  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 46


>gi|194339067|gb|ACF49449.1| GyrB [Amycolatopsis echigonensis]
          Length = 449

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 7  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 48


>gi|194339055|gb|ACF49443.1| GyrB [Amycolatopsis albidoflavus]
          Length = 461

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 4  VQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 45


>gi|189464548|ref|ZP_03013333.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
          17393]
 gi|189438338|gb|EDV07323.1| hypothetical protein BACINT_00891 [Bacteroides intestinalis DSM
          17393]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|209544317|ref|YP_002276546.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531994|gb|ACI51931.1| DNA topoisomerase IV, B subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 678

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A  ++ ++  +  G   +  I DNG G+  +
Sbjct: 72  EILDNAMDEAVAGHATTIDVTLEAG--DWLTIRDNGRGIPVD 111


>gi|167764147|ref|ZP_02436274.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
          43183]
 gi|167698263|gb|EDS14842.1| hypothetical protein BACSTE_02530 [Bacteroides stercoris ATCC
          43183]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|162147271|ref|YP_001601732.1| DNA topoisomerase IV subunit B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785848|emb|CAP55419.1| putative DNA gyrase subunit B [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 678

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A  ++ ++  +  G   +  I DNG G+  +
Sbjct: 72  EILDNAMDEAVAGHATTIDVTLEAG--DWLTIRDNGRGIPVD 111


>gi|160891431|ref|ZP_02072434.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC
          8492]
 gi|270295441|ref|ZP_06201642.1| DNA gyrase, B subunit [Bacteroides sp. D20]
 gi|156858838|gb|EDO52269.1| hypothetical protein BACUNI_03882 [Bacteroides uniformis ATCC
          8492]
 gi|270274688|gb|EFA20549.1| DNA gyrase, B subunit [Bacteroides sp. D20]
          Length = 653

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|150003955|ref|YP_001298699.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
 gi|254880798|ref|ZP_05253508.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA]
 gi|294775119|ref|ZP_06740648.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
 gi|319639808|ref|ZP_07994538.1| B subunit [Bacteroides sp. 3_1_40A]
 gi|149932379|gb|ABR39077.1| DNA gyrase B subunit [Bacteroides vulgatus ATCC 8482]
 gi|254833591|gb|EET13900.1| DNA gyrase B subunit [Bacteroides sp. 4_3_47FAA]
 gi|294451163|gb|EFG19634.1| DNA gyrase, B subunit [Bacteroides vulgatus PC510]
 gi|317388625|gb|EFV69474.1| B subunit [Bacteroides sp. 3_1_40A]
          Length = 654

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 47 VYEVVDNSIDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|89092022|ref|ZP_01164977.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92]
 gi|89083757|gb|EAR62974.1| DNA topoisomerase IV subunit B [Oceanospirillum sp. MED92]
          Length = 630

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 17/77 (22%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
           +RP+   +E+I+NS+D   A  + +++ V+         +TD+G GM  +          
Sbjct: 30  DRPNHLAQEVIDNSVDEALAGHAKQIDVVLNKD--QSLSVTDDGRGMPVDIHPEQGVSGV 87

Query: 67  EIPMAVQRHCTSKISDD 83
           E+ +  + H   K ++D
Sbjct: 88  ELIL-CKLHAGGKFNND 103


>gi|145577999|gb|ABP82718.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar roskildiensis]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 77


>gi|119899482|ref|YP_934695.1| putative two component sensor histidine kinase [Azoarcus sp. BH72]
 gi|119671895|emb|CAL95809.1| putative two component sensor histidine kinase [Azoarcus sp. BH72]
          Length = 692

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           ER    +  L++N++DA        ++      GK    I DNG GM ++
Sbjct: 572 ERLERVLGHLVQNAVDAMPDGGKVAIQIHRPRPGKVAVSIVDNGCGMPAD 621


>gi|70704840|gb|AAZ06862.1| DNA gyrase subunit B [Acholeplasma parvum]
 gi|70704870|gb|AAZ06863.1| DNA gyrase subunit B [Acholeplasma parvum]
          Length = 536

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  +   I        ++TDNG G+ 
Sbjct: 12 EIVDNSIDEALAGYADTITLEILKDNI--IRVTDNGRGIP 49


>gi|121998762|ref|YP_001003549.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1]
 gi|121590167|gb|ABM62747.1| DNA topoisomerase IV subunit B [Halorhodospira halophila SL1]
          Length = 636

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP    +E+I+NS+D   A  + R+E  +   G    +++D+G GM  +
Sbjct: 35 RPDHLAQEVIDNSVDEAVAGHARRIEVTVHADG--SLEVSDDGRGMPVD 81


>gi|332665545|ref|YP_004448333.1| ATP-binding domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332334359|gb|AEE51460.1| ATP-binding region ATPase domain protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 622

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 25/89 (28%)

Query: 27  IKELIENSLDA-----------ESS------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA           E+       ++E +I    K+   I DNG GMT EE+ 
Sbjct: 29  LRELVSNAVDASNKLKALSRRGEAKGELGDLKIEILIDKDAKT-ITIRDNGIGMTEEEVK 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFG 91
             + +   S       K  D+ + I  FG
Sbjct: 88  KYLNQVAFSSAQEFLEKYKDETNIIGNFG 116


>gi|299136177|ref|ZP_07029361.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602301|gb|EFI58455.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX8]
          Length = 880

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE 67
          + E+++NS+D   A  ++R++  I     +   + D+G G+  + 
Sbjct: 56 VYEVVDNSVDEALAGHATRIDVTIHVD--NSITVVDDGRGIPVDN 98


>gi|294663738|ref|ZP_06729289.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606396|gb|EFF49590.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 629

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +V+  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVDVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 89  LILTRLHAGGKFSN 102


>gi|294626653|ref|ZP_06705250.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599073|gb|EFF43213.1| DNA topoisomerase IV subunit B [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 629

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +V+  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVDVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 89  LILTRLHAGGKFSN 102


>gi|254797071|ref|YP_003081909.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois]
 gi|254590317|gb|ACT69679.1| DNA gyrase, B subunit [Neorickettsia risticii str. Illinois]
          Length = 758

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
              + E+++NS+D   A   + +E VI   G     + DNG GM ++
Sbjct: 12 LHQMVYEVVDNSVDESLAGYCTAIEVVIDVDG--SILVKDNGRGMPTD 57


>gi|225351104|ref|ZP_03742127.1| hypothetical protein BIFPSEUDO_02690 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158560|gb|EEG71802.1| hypothetical protein BIFPSEUDO_02690 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 454

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 25  IAIKELIENSLDAES--SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN+++     + V   +  G GK   ++ D G G+    +    +R  
Sbjct: 325 TAVKNLVENAINYSPEHTTVAVGVGSGDGKVSIRVVDQGIGIPESSLDRIFERFY 379


>gi|90019653|ref|YP_525480.1| DNA gyrase subunit B [Saccharophagus degradans 2-40]
 gi|89949253|gb|ABD79268.1| DNA gyrase subunit B [Saccharophagus degradans 2-40]
          Length = 808

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 75/247 (30%), Gaps = 26/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           E+++NS+D   A   + ++ VI         ++DNG G+ +E         E+ M V  H
Sbjct: 45  EIVDNSIDEALAGHCNEIKVVIHPN--ESVTVSDNGRGIPTEMHEEGVSAAEVIMTVL-H 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S +  ++                +      V 
Sbjct: 102 AGGKFDDNTYKV-SGGLHGVGVSVVNALSEVLTLTIRRGGQV--------FEQVYHHGVP 152

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-KVSFTFSTIKSNRY 194
             P T++   ++  T        ++          + +R+              I     
Sbjct: 153 QAPLTVIGETEVSGTQVHFKPSAETFTNIEFHFDQLGKRLRELSFLNSGVRIVLIDERSG 212

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           K +     G     +  +       N V       E    G      +N       + + 
Sbjct: 213 KEDVFEYEGGLKAFVGYLNQNKNPINKVIHFSTFREEDGVGVEVALQWNDSFQENIFCYT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|52145204|ref|YP_081624.1| DNA gyrase subunit B [Bacillus cereus E33L]
 gi|229094604|ref|ZP_04225671.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
 gi|229159054|ref|ZP_04287110.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
 gi|300118805|ref|ZP_07056525.1| DNA gyrase subunit B [Bacillus cereus SJ1]
 gi|51978673|gb|AAU20223.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit B)
          [Bacillus cereus E33L]
 gi|228624473|gb|EEK81244.1| DNA gyrase subunit B [Bacillus cereus ATCC 4342]
 gi|228688851|gb|EEL42682.1| DNA gyrase subunit B [Bacillus cereus Rock3-42]
 gi|298723773|gb|EFI64495.1| DNA gyrase subunit B [Bacillus cereus SJ1]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 84


>gi|308189672|ref|YP_003922603.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER]
 gi|307624414|gb|ADN68719.1| topoisomerase IV, subunit B [Mycoplasma fermentans JER]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+++NS+D   A  ++ +   +   G    ++ DNG G+           + +   + H 
Sbjct: 40  EIVDNSIDEALAGYANEISVTLTKNG--SVKVMDNGRGIPVGKTPSGKSAVELVFTELHA 97

Query: 77  TSKISD 82
             K ++
Sbjct: 98  GGKFNE 103


>gi|270339919|ref|ZP_06006454.2| sensor histidine kinase [Prevotella bergensis DSM 17361]
 gi|270333268|gb|EFA44054.1| sensor histidine kinase [Prevotella bergensis DSM 17361]
          Length = 387

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 19  IIERPSI-----AIKELIENSLDA-ESS--RVETVIAGGGKS-FFQITDNGFGMTSEEIP 69
           ++   +       ++ L +N++DA  +   R+   +          ++D G G+  ++I 
Sbjct: 276 VVVNLNSSLFEWVLENLSKNAVDAMGADSGRITIGVEDTETKVLVYVSDTGKGIRRKDIS 335

Query: 70  MAVQRHCTSK 79
              +   T+K
Sbjct: 336 NVFRPGFTTK 345


>gi|319776855|ref|YP_004136506.1| topoisomerase iv subunit b [Mycoplasma fermentans M64]
 gi|238809640|dbj|BAH69430.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318037930|gb|ADV34129.1| Topoisomerase IV subunit B [Mycoplasma fermentans M64]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+++NS+D   A  ++ +   +   G    ++ DNG G+           + +   + H 
Sbjct: 40  EIVDNSIDEALAGYANEISVTLTKNG--SVKVMDNGRGIPVGKTPSGKSAVELVFTELHA 97

Query: 77  TSKISD 82
             K ++
Sbjct: 98  GGKFNE 103


>gi|229176169|ref|ZP_04303661.1| DNA gyrase subunit B [Bacillus cereus MM3]
 gi|228607328|gb|EEK64658.1| DNA gyrase subunit B [Bacillus cereus MM3]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSILVTDNGRGIP 84


>gi|168181121|ref|ZP_02615785.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
 gi|226947228|ref|YP_002802319.1| DNA gyrase subunit B [Clostridium botulinum A2 str. Kyoto]
 gi|182668169|gb|EDT80148.1| DNA gyrase, B subunit [Clostridium botulinum NCTC 2916]
 gi|226844613|gb|ACO87279.1| DNA gyrase, B subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|115381174|gb|ABI96236.1| DNA topoisomerase IV subunit B [Mesoplasma entomophilum]
          Length = 552

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +   G     + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGYCTEINVTLEKNG--SVTVADNGRGVP 51


>gi|115381170|gb|ABI96234.1| DNA topoisomerase IV subunit B [Mesoplasma grammopterae]
 gi|115381172|gb|ABI96235.1| DNA topoisomerase IV subunit B [Mesoplasma grammopterae]
          Length = 552

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +   G     + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGYCTEINVTLEKNG--SVTVADNGRGVP 51


>gi|94957788|gb|ABF47144.1| DNA topoisomerase IV subunit B [Mesoplasma chauliocola]
          Length = 551

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +   G     + DNG G+ 
Sbjct: 13 EIVDNSIDEALAGYCTEINVTLEKNG--SVTVADNGRGVP 50


>gi|94676498|ref|YP_588600.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219648|gb|ABF13807.1| DNA gyrase, B subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 802

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS----EEIPMAVQ-----RH 75
           E+++N++D   A     +   I     +   + DNG G+ +    EE   A +      H
Sbjct: 42  EVVDNAIDEALAGYCQEILVTIHED--NSISVQDNGRGIPTDIHIEERRSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  +   +    QI  +G   S ++ V
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGISVVNALSEKLELFIKREGH-IYYQIYYNGVPQSPLKIV 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +  T   +R      P+ + F   ++ +  ++   +R ++     +S +         
Sbjct: 158 GNSIQTGTTIRF----WPSFIIFTNKKEFQYEILAQRLRELSFLNSGLSISLH--DKRNS 211

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     I  +       +        ++  +     +   N       Y F 
Sbjct: 212 QLEHFHYQGGIKAFIKYLNKNKKPIHTNIFYIAVDKCGINVEIAMQW-NDSCQENIYCFT 270

Query: 255 NG 256
           N 
Sbjct: 271 NN 272


>gi|34396102|gb|AAQ65248.1| DNA gyrase subunit B [Mesoplasma tabanidae]
          Length = 539

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +   G     + DNG G+ 
Sbjct: 13 EIVDNSIDEALAGYCTEINVTLEKNG--SVTVADNGRGVP 50


>gi|28630989|gb|AAO45882.1| DNA gyrase subunit B [Mesoplasma chauliocola]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +   G     + DNG G+ 
Sbjct: 27 EIVDNSIDEALAGYCTEINVTLEKNG--SVTVADNGRGVP 64


>gi|50365125|ref|YP_053550.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
 gi|50363681|gb|AAT75666.1| DNA topoisomerase IV subunit B [Mesoplasma florum L1]
          Length = 647

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +   G     + DNG G+ 
Sbjct: 43 EIVDNSIDEALAGYCTEINVTLEKNG--SVTVADNGRGVP 80


>gi|296167139|ref|ZP_06849546.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295897461|gb|EFG77060.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 677

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  +++V+  +   G    ++ D+G G+        V  H T
Sbjct: 48 EVVDNSVDEAMAGYATKVDVRLLDDG--SVEVVDDGRGIP-------VAMHAT 91


>gi|305681577|ref|ZP_07404383.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658737|gb|EFM48238.1| DNA gyrase, B subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 673

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +VE  I A GG    ++ DNG G+  E
Sbjct: 44 EVVDNSVDEAMAGYADKVEVTILADGG---IEVIDNGRGIPVE 83


>gi|227538317|ref|ZP_03968366.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241832|gb|EEI91847.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 82/247 (33%), Gaps = 25/247 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEE---IPMAVQ- 73
           + E+++NS+D   A     +   I  G  +   + DNG G+       E    + + +  
Sbjct: 45  VYEVVDNSIDEAVAGYCDDILVTIHEG--NSISVQDNGRGIPTGINKKENKSALELVMTV 102

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K   D   + + G  G  +  + A+S L +           Q    G+    V+ 
Sbjct: 103 LHAGGKFDKDTYKV-SGGLHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKA 161

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT----FSTI 189
           +  +  T   V       P    F  +     + +++ +R +A     +  T       +
Sbjct: 162 IGESERTGTTVTFF----PDPEIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREIL 217

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
               ++ +   + G   E +  + G         +  +  +  +     +  +N   +  
Sbjct: 218 DDGSFRKDVFFSEGGLQEFVKFLDGNRQSLIPDPIYVEGIKQGVPVELAL-QYNDTYSEN 276

Query: 250 FYVFING 256
            + ++N 
Sbjct: 277 VHSYVNN 283


>gi|225020879|ref|ZP_03710071.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224946361|gb|EEG27570.1| hypothetical protein CORMATOL_00887 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 646

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +VE  I A GG    ++ DNG G+  E
Sbjct: 17 EVVDNSVDEAMAGYADKVEVTILADGG---IEVIDNGRGIPVE 56


>gi|170760652|ref|YP_001785341.1| DNA gyrase subunit B [Clostridium botulinum A3 str. Loch Maree]
 gi|169407641|gb|ACA56052.1| DNA gyrase, B subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCTHIEVFIHKD--NSITVVDDGRGMP 82


>gi|154499724|ref|ZP_02037762.1| hypothetical protein BACCAP_03381 [Bacteroides capillosus ATCC
           29799]
 gi|150271322|gb|EDM98579.1| hypothetical protein BACCAP_03381 [Bacteroides capillosus ATCC
           29799]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
            +  +I+D+G G+  E++    +R   S+ S D   I 
Sbjct: 335 MTQIEISDDGKGIHPEDLYNIFKRFYRSRFSSDVHGIG 372


>gi|154244154|ref|YP_001415112.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154158239|gb|ABS65455.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 510

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 30  LIENSLDAES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN+L   +   R+E  +    G +   I D G G+  E +P   +R  
Sbjct: 399 LVENALKYGAPGKRIEVRLFRENGTAVVSIRDFGPGIPPEHLPRLTERFY 448


>gi|86145026|ref|ZP_01063358.1| hypothetical protein MED222_11453 [Vibrio sp. MED222]
 gi|85837925|gb|EAQ56037.1| hypothetical protein MED222_11453 [Vibrio sp. MED222]
          Length = 647

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 13/67 (19%)

Query: 22  RPSIAIKELIENSLDAESSRVE--------TVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           R    +  LI N+LDA    +E               K+    + DNG G+  E+IP   
Sbjct: 539 RLEQVLVNLISNALDA----IEHREQPELSISTQEHSKTIQILVMDNGLGIPEEDIPHLF 594

Query: 73  QRHCTSK 79
               T K
Sbjct: 595 DPFYTRK 601


>gi|114564488|ref|YP_752002.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400]
 gi|114335781|gb|ABI73163.1| DNA topoisomerase IV subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 628

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 29/209 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   A  ++++E V+     +  ++TD+G GM  +         + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHATKIEVVLHTD--NSLEVTDDGRGMPVDIHAEEGIPGVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           + + + H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 89  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEISVRRDAQIYQMAFENGFKV 147

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS- 183
           E++         N GT V            +++  S     + +  ++R  A+  P +  
Sbjct: 148 EELVVTGTCGRRNTGTRVHFW-------PDVSYFDSPNFSVSKLIYILRAKAVLCPGLRI 200

Query: 184 -FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            FT                     E I  
Sbjct: 201 KFTNKQNGDVHEWFYESGLTDYLKEAIKD 229


>gi|312077645|ref|XP_003141395.1| heat shock protein 75 [Loa loa]
 gi|307763442|gb|EFO22676.1| heat shock protein 75 [Loa loa]
          Length = 675

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 73/233 (31%), Gaps = 53/233 (22%)

Query: 27  IKELIENSLDA------------ESSRV--ETVI---AGGGKSFFQITDNGFGMTSEEIP 69
           I+ELI N+ DA            + + +  E  I              DNG GM  E++ 
Sbjct: 74  IRELISNASDALEKRRCKHLETNKDTNIAYEIKITTDEDA--RLIIFEDNGIGMDKEDLV 131

Query: 70  MAVQRHCTS---KISDD---FSNIHT--------FGFRGEALPSIGAVS-HLTLMSRPPQ 114
             +     S   K  ++     ++ T         GF      S   V+ ++ + +R   
Sbjct: 132 NCLGTIAKSGSKKFMEEQSSLGHVSTESIIGQFGVGF-----YSAFMVANNVVVKTRKED 186

Query: 115 NNTGAQIAISGEKISSVRPVA-MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIR 173
           ++ G     +G    SV  V  +  G+ +EV               +E  + + + +VI 
Sbjct: 187 SDKGYLWKWNGGDAYSVEEVDSLPVGSRIEV--------TLRPGSATEFAKKDKVVEVIS 238

Query: 174 RMAIAYPKVSFTFSTIKSNRYKMNFQSTNG--NFPERISQVIGEDFINNAVEL 224
           + +     ++   +        ++   T         +  V         +  
Sbjct: 239 KYSYF---ITLPITVNGERVNTVDAIWTMNPKEVTSEMHDVFFRQLAKTHLPH 288


>gi|229817001|ref|ZP_04447283.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM
           20098]
 gi|229785746|gb|EEP21860.1| hypothetical protein BIFANG_02256 [Bifidobacterium angulatum DSM
           20098]
          Length = 717

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  +S +E  I    G    ++ D+G G+  +
Sbjct: 92  VYEIVDNSVDEALAGYASHIEVTILPDNG---IRVVDDGRGIPVD 133


>gi|145578025|gb|ABP82731.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus weihenstephanensis]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 77


>gi|145577989|gb|ABP82713.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus weihenstephanensis]
 gi|145578003|gb|ABP82720.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar vazensis]
 gi|145578011|gb|ABP82724.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus weihenstephanensis]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 77


>gi|145577973|gb|ABP82705.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus weihenstephanensis]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 77


>gi|145577991|gb|ABP82714.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus mycoides]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 77


>gi|148263898|ref|YP_001230604.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397398|gb|ABQ26031.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 32  ENSLDAES----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +N+L   +     ++E   A  G  +   ++DNG G+  E+IP+  +   T K
Sbjct: 739 KNAL--GALPEGGKIEISTALAGDAAIINVSDNGQGIEPEDIPLLFEPFFTRK 789


>gi|302525142|ref|ZP_07277484.1| heat shock protein 90 [Streptomyces sp. AA4]
 gi|302434037|gb|EFL05853.1| heat shock protein 90 [Streptomyces sp. AA4]
          Length = 647

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 40/153 (26%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA               +      +E ++    ++   + DNG GM+ +++
Sbjct: 57  LRELVSNASDALDKLKLETYRDKDLRADTDNLHIEILLDSDARTL-TVRDNGIGMSRDDV 115

Query: 69  PMAVQRHCTS-------KISD-------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPP 113
              +     S       K+ +       D       GF      S   V+  +TL++R  
Sbjct: 116 VNLIGTIAKSGTADFLRKLKESKESAGQDLIGQFGVGF-----YSSFMVADKVTLVTRRA 170

Query: 114 QNNTGAQIAIS-GEKISSVRPVAMNPGTIVEVR 145
             + G +   +     +         GT V + 
Sbjct: 171 GADEGVRWESTGEGTYTIESLSEAPQGTSVTLH 203


>gi|190710561|gb|ACE95111.1| gyrase subunit B [Bacillus thuringiensis serovar novosibirsk]
          Length = 627

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 77


>gi|188991959|ref|YP_001903969.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733719|emb|CAP51924.1| Topoisomerase IV subunit B [Xanthomonas campestris pv. campestris]
          Length = 673

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 75  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDMHPEEKIPGVE 132

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 133 LILTRLHAGGKFSN 146


>gi|21242463|ref|NP_642045.1| DNA topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|325924935|ref|ZP_08186364.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118]
 gi|21107909|gb|AAM36581.1| topoisomerase IV subunit B [Xanthomonas axonopodis pv. citri str.
           306]
 gi|325544658|gb|EGD16012.1| DNA topoisomerase IV subunit B [Xanthomonas perforans 91-118]
          Length = 629

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 89  LILTRLHAGGKFSN 102


>gi|21231148|ref|NP_637065.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768844|ref|YP_243606.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112786|gb|AAM40989.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574176|gb|AAY49586.1| topoisomerase IV subunit B [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 634

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 36  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDMHPEEKIPGVE 93

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 94  LILTRLHAGGKFSN 107


>gi|78047304|ref|YP_363479.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035734|emb|CAJ23425.1| topoisomerase IV subunit B [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 673

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 75  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 132

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 133 LILTRLHAGGKFSN 146


>gi|326692337|ref|ZP_08229342.1| DNA gyrase, B subunit [Leuconostoc argentinum KCTC 3773]
          Length = 669

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N +D   A  +S +   I     +   +TD+G G+  +
Sbjct: 71  EIVDNGIDEALAGFASHITVTIEKD--NSITVTDDGRGIPVD 110


>gi|302554633|ref|ZP_07306975.1| two-component system sensor kinase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472251|gb|EFL35344.1| two-component system sensor kinase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 558

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 5   KLSEKIINQIAAGEIIER-PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITD 58
           +L +++I+         R     +  L++N+LDA +     RVE  +   G++   ++ D
Sbjct: 418 RLPDRLID--------SRGLVTVVGNLVDNALDAVAGEPHARVEVELRAEGRTAILRVRD 469

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+  E          ++K
Sbjct: 470 TGPGIPLEHRESIFTEGWSTK 490


>gi|300172307|ref|YP_003771472.1| DNA gyrase subunit B [Leuconostoc gasicomitatum LMG 18811]
 gi|299886685|emb|CBL90653.1| DNA gyrase, B subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 669

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N +D   A  +S +   I     +   +TD+G G+  +
Sbjct: 71  EIVDNGIDEALAGFASHITVTIEKD--NSITVTDDGRGIPVD 110


>gi|296110748|ref|YP_003621129.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832279|gb|ADG40160.1| DNA gyrase, B subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 669

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N +D   A  +S +   I     +   +TD+G G+  +
Sbjct: 71  EIVDNGIDEALAGFASHITVTIEKD--NSITVTDDGRGIPVD 110


>gi|241895511|ref|ZP_04782807.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
          ATCC 33313]
 gi|241871257|gb|EER75008.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
          ATCC 33313]
          Length = 648

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  ++ +   I     +   + DNG G+  +
Sbjct: 52 EIVDNGIDEALAGFANHITVTIEKD--NSITVIDNGRGIPVD 91


>gi|227432902|ref|ZP_03914846.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351335|gb|EEJ41617.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N +D   A  +S +   I     +   +TD+G G+  +
Sbjct: 74  EIVDNGIDEALAGFASHITVTIEKD--NSITVTDDGRGIPVD 113


>gi|188589486|ref|YP_001921145.1| hypothetical protein CLH_1761 [Clostridium botulinum E3 str.
          Alaska E43]
 gi|188499767|gb|ACD52903.1| conserved hypothetical protein [Clostridium botulinum E3 str.
          Alaska E43]
          Length = 679

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
          +  PSI + ELI+N  D+ S  ++  I    K    I D G G++ E+I    
Sbjct: 21 VASPSIVLSELIKNGFDSNSKTIDINI-DTSKHQVTILDKGEGLSIEDIKKLG 72


>gi|145577971|gb|ABP82704.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus mycoides]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 40 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 77


>gi|159900890|ref|YP_001547137.1| ATPase domain-containing protein [Herpetosiphon aurantiacus ATCC
          23779]
 gi|159893929|gb|ABX07009.1| ATP-binding region ATPase domain protein [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 594

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 20/75 (26%)

Query: 8  EKIINQIAAGEIIERPSI----AIKELIENSLDAESSR----------VETVIAGGGKSF 53
          E +I  +A     E        AI+ELI+N+ D+   R          +   I    K  
Sbjct: 11 EHLIRLLA-----ENLYSDPHVAIRELIQNASDSCVRRLAQQGVFQPAIHVRI-DPTKRL 64

Query: 54 FQITDNGFGMTSEEI 68
            + DNG GM  E++
Sbjct: 65 LVVEDNGTGMAREDV 79


>gi|41406103|ref|NP_958939.1| DNA gyrase subunit B [Mycobacterium avium subsp. paratuberculosis
          K-10]
 gi|118463778|ref|YP_879308.1| DNA gyrase subunit B [Mycobacterium avium 104]
 gi|254773058|ref|ZP_05214574.1| DNA gyrase subunit B [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|13431552|sp|Q9L7L3|GYRB_MYCPA RecName: Full=DNA gyrase subunit B
 gi|6969273|gb|AAF33694.1| putative gyrB [Mycobacterium avium subsp. paratuberculosis]
 gi|41394451|gb|AAS02322.1| GyrB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165065|gb|ABK65962.1| DNA gyrase, B subunit [Mycobacterium avium 104]
          Length = 677

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  + RV+  I   G    ++ DNG G+        V  H T
Sbjct: 48 EVVDNSVDEAMAGYADRVDVRILDDG--SVEVADNGRGIP-------VAMHAT 91


>gi|116617179|ref|YP_817550.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096026|gb|ABJ61177.1| DNA gyrase subunit B [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 672

 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N +D   A  +S +   I     +   +TD+G G+  +
Sbjct: 74  EIVDNGIDEALAGFASHITVTIEKD--NSITVTDDGRGIPVD 113


>gi|333029415|ref|ZP_08457476.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011]
 gi|332740012|gb|EGJ70494.1| DNA gyrase, B subunit [Bacteroides coprosuis DSM 18011]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I     +   + DNG G+ ++
Sbjct: 47 VYEVVDNSIDEALAGYCDHIDVTINED--NSITVKDNGRGIPTD 88


>gi|295099695|emb|CBK88784.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Eubacterium cylindroides T2-87]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N +D   A  +S+++  I         + DNG GM 
Sbjct: 62 EIVDNGIDEALAGFASQIDVTIEKD--DIIAVRDNGRGMP 99


>gi|260579565|ref|ZP_05847436.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734]
 gi|258602336|gb|EEW15642.1| DNA gyrase subunit B [Corynebacterium jeikeium ATCC 43734]
          Length = 674

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 16/73 (21%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP--------MAVQRH 75
           E+++NS+D   A  +  V   + A GG    ++ D+G G+  E+ P        +  Q H
Sbjct: 46  EVVDNSVDEAMAGYAKEVSVTLLADGG---VEVIDDGRGIPVEDHPTGPPTVQVVMTQLH 102

Query: 76  CTSKISDDFSNIH 88
              K   D   + 
Sbjct: 103 AGGKFDSDSYAVS 115


>gi|254456050|ref|ZP_05069479.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083052|gb|EDZ60478.1| DNA gyrase, B subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 686

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I   G     + D+G G+  +
Sbjct: 42 VYEVVDNSIDEALAGHCKNINVRINSDGT--ITVNDDGRGIPVD 83


>gi|169823702|ref|YP_001691313.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
 gi|167830507|dbj|BAG07423.1| DNA gyrase B subunit [Finegoldia magna ATCC 29328]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ--------- 73
           + E+++NS+D   A     ++  I     +   + D+G G+  E  P   +         
Sbjct: 41  VYEVVDNSIDEALAGVCDLIKVTIKKD--NSIIVEDDGSGIPVETHPKTGKSTLETVLTV 98

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K S+D    ++ G  G  +  + A+S   L++R  ++    +      K  +   
Sbjct: 99  LHAGGKFSNDAYQ-YSGGLHGVGVSCVNALS-TYLIARVKRDGKMYEQRFEKGKTVTGLT 156

Query: 134 V-------------AMNPGTIVEVRDLFFTIPARL 155
           V              M   TI E  +    + A+ 
Sbjct: 157 VVKENVRGTGTTIEFMPDDTIFETLNFDKNVLAKR 191


>gi|149278877|ref|ZP_01885012.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase)
          [Pedobacter sp. BAL39]
 gi|149230496|gb|EDM35880.1| DNA topoisomerase (ATP-hydrolyzing), subunit B (DNA gyrase)
          [Pedobacter sp. BAL39]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  +   I     +  ++ DNG G+ 
Sbjct: 45 VYEVVDNSIDEALAGHADTIYVNILED--NSIRVEDNGRGIP 84


>gi|68535067|ref|YP_249772.1| DNA gyrase subunit B [Corynebacterium jeikeium K411]
 gi|68262666|emb|CAI36154.1| DNA gyrase subunit B [Corynebacterium jeikeium K411]
          Length = 674

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 16/73 (21%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP--------MAVQRH 75
           E+++NS+D   A  +  V   + A GG    ++ D+G G+  E+ P        +  Q H
Sbjct: 46  EVVDNSVDEAMAGYAKEVSVTLLADGG---VEVIDDGRGIPVEDHPTGPPTVQVVMTQLH 102

Query: 76  CTSKISDDFSNIH 88
              K   D   + 
Sbjct: 103 AGGKFDSDSYAVS 115


>gi|31071473|dbj|BAC76785.1| DNA gyrase B subunit [Tolypothrix sp. IAM M-259]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  I   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDINADG--SVTVTDDGRGIPTD 51


>gi|325000908|ref|ZP_08122020.1| sensor histidine kinase [Pseudonocardia sp. P1]
          Length = 681

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 23  PSIAIKELIENSLDAESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               ++ L++N+    ++  V   +   G  +   + D+G G+   +     +R 
Sbjct: 406 LVRVVRNLVDNA-KRHATSTVTVSVGTDGATAVIDVEDDGCGVPEADRARVFERF 459


>gi|302557976|ref|ZP_07310318.1| two component sensor histidine kinase [Streptomyces griseoflavus
           Tu4000]
 gi|302475594|gb|EFL38687.1| two component sensor histidine kinase [Streptomyces griseoflavus
           Tu4000]
          Length = 557

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 5   KLSEKIINQIAAGEIIER-PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITD 58
           +L +++I+         R     +  L++N+LDA +     RVE  +   G++    + D
Sbjct: 416 RLPDRLID--------PRGLVTVVGNLVDNALDAVAGTPHARVEVELRAEGRTAVLVVRD 467

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+  E   +      ++K
Sbjct: 468 TGPGIPPERRELIFTEGWSTK 488


>gi|322420000|ref|YP_004199223.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
 gi|320126387|gb|ADW13947.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
          Length = 541

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 35  LDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +DA  +RV      GG+S     + DNG GM+  ++    +   T+K
Sbjct: 460 IDATLTRV-----NGGRSEVRISVRDNGSGMSQADVKRVFEPFFTTK 501


>gi|218461624|ref|ZP_03501715.1| hypothetical protein RetlK5_19961 [Rhizobium etli Kim 5]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 31  IENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
           I+N + A++ RV+  +A          I D+G GM   E+  A++    SK   D  +  
Sbjct: 2   IDNCITAKARRVDI-VADTTSDEPMLTIIDDGHGMDDVELIDAMRLG--SKNPLDVRHAK 58

Query: 89  TFGFRGEAL--PSIGAVSHLTLMSR 111
             G  G  L   S      LT++SR
Sbjct: 59  DLGRFGLGLKSASFSQCRRLTVISR 83


>gi|167644129|ref|YP_001681792.1| DNA gyrase subunit B [Caulobacter sp. K31]
 gi|167346559|gb|ABZ69294.1| DNA gyrase, B subunit [Caulobacter sp. K31]
          Length = 830

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++VE ++   G     +TD+G G+  +
Sbjct: 70  VYEVVDNAIDEALAGHATKVEVILNADG--SVTVTDDGRGIPVD 111


>gi|163938018|ref|YP_001642902.1| DNA gyrase subunit B [Bacillus weihenstephanensis KBAB4]
 gi|229136319|ref|ZP_04265066.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
 gi|163860215|gb|ABY41274.1| DNA gyrase, B subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647191|gb|EEL03279.1| DNA gyrase subunit B [Bacillus cereus BDRD-ST196]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 84


>gi|262377153|ref|ZP_06070378.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145]
 gi|262307891|gb|EEY89029.1| DNA topoisomerase IV, B subunit [Acinetobacter lwoffii SH145]
          Length = 626

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  ++++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHANKITVTVYKDG--SLSVEDNGRGMPVD 76


>gi|260774538|ref|ZP_05883451.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14]
 gi|260610444|gb|EEX35650.1| DNA gyrase subunit B [Vibrio metschnikovii CIP 69.14]
          Length = 781

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           E+++NS+D   A     +   I     +   ++D+G G+       E +  A       H
Sbjct: 18  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTELHTEENVSAAEVIMTVLH 75

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 76  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYRHGVPQAPLAVVG 134

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   +R      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 135 DTERTGTTLRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIRLQ-DEREADK 188

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     ++ +       +    +   +            +N G     Y F N
Sbjct: 189 HDHFMYEGGIRAFVTHLNRNKTPIHDKVFHFNHDREDGTSVEVAMQWNDGFQENIYCFTN 248

Query: 256 GRTVQD 261
               +D
Sbjct: 249 NIPQRD 254


>gi|300774234|ref|ZP_07084101.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758913|gb|EFK55742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 84/247 (34%), Gaps = 25/247 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEE---IPMAVQ- 73
           + E+++NS+D   A   + +   I  G  +   + DNG G+       E    + + +  
Sbjct: 45  VYEVVDNSIDEAVAGYCNDILVTIHEG--NSISVQDNGRGIPTGINKKENKSALELVMTV 102

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K   D   + + G  G  +  + A+S L +           Q    G+    V+ 
Sbjct: 103 LHAGGKFDKDTYKV-SGGLHGVGVSCVNALSTLLIAEVHRDGQIFKQEYEKGKPKYDVKA 161

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT----FSTI 189
           +  +  T   V       P    F  +     + +++ +R +A     +  T       +
Sbjct: 162 IGESERTGTTVTFF----PDPEIFTMTTVYNYDTLSNRLRELAFLNKGIRLTIVDEREIL 217

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
               ++ +   + G   E +  + G      +  +  +  +  +     +  +N   +  
Sbjct: 218 DDGSFRKDVFFSEGGLQEFVKFLDGNRQSLISNPIYVEGIKQGVPVELAL-QYNDTYSEN 276

Query: 250 FYVFING 256
            + ++N 
Sbjct: 277 VHSYVNN 283


>gi|253988247|ref|YP_003039603.1| two-component sensor histidine kinase uhpb, phosphorylates uhpa
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638761|emb|CAR67378.1| two-component sensor histidine kinase uhpb,phosphorylates uhpa
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779697|emb|CAQ82858.1| two-component sensor histidine kinase uhpb, phosphorylates uhpa
           [Photorhabdus asymbiotica]
          Length = 514

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIEN-SLDAESSRVETVIAGGGKSFF--QITDNGF 61
           +L +  +N+     +I      ++EL+ N S  A+++ +   +    +     +I+DNG 
Sbjct: 410 QLPQNPVNE----TVIFTLYRLVQELLNNISKHAKATHINITLRQ-RRDVIELRISDNGI 464

Query: 62  GMTSE 66
           G+T +
Sbjct: 465 GITED 469


>gi|163783146|ref|ZP_02178140.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881480|gb|EDP74990.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 798

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  V  +I   G     + D+G G+  +
Sbjct: 54 EILDNAVDEAMAGYAKNVSVIIHDDG--SITVEDDGRGIPVD 93


>gi|147921290|ref|YP_684896.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
          methanogenic archaeon RC-I]
 gi|110620292|emb|CAJ35570.1| type II DNA topoisomerase II (gyrase), subunit B [uncultured
          methanogenic archaeon RC-I]
          Length = 635

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I   G     +TDNG G+  E
Sbjct: 44 VYEVVDNSIDEALAGYCNAIDVTINPNG--SVTVTDNGRGIPVE 85


>gi|332638148|ref|ZP_08417011.1| DNA gyrase subunit B [Weissella cibaria KACC 11862]
          Length = 648

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  +  +   I     +   +TDNG G+  +
Sbjct: 52 EIVDNGIDEALAGFADHITVTIEKD--NSITVTDNGRGIPVD 91


>gi|311992510|ref|YP_004009378.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Ac42]
 gi|298684293|gb|ADI96254.1| gp60plus39 DNA topoisomerase subunit [Acinetobacter phage Ac42]
          Length = 608

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 18 EIIERPSIAIKELIENSLD-A------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          E +      I ELI+NSLD A       ++++   I G   +   I DNG G+  + +
Sbjct: 43 EYVPGLIKIISELIDNSLDEAIRTDFEYANKISVDITG---TSVTIKDNGRGIPQDNV 97


>gi|197106831|ref|YP_002132208.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1]
 gi|196480251|gb|ACG79779.1| DNA gyrase, B subunit [Phenylobacterium zucineum HLK1]
          Length = 812

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +++VE ++   G     +TD+G G+ ++
Sbjct: 55 VYEVVDNAIDEALAGHATKVEVILNADG--SCTVTDDGRGIPTD 96


>gi|171317336|ref|ZP_02906531.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MEX-5]
 gi|171097477|gb|EDT42316.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MEX-5]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A GG +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAASGGGAVIAVLDRGPGIPDDQLDAVFEPF 387


>gi|82798478|gb|ABB91902.1| DNA gyrase subunit B [Acholeplasma vituli]
 gi|82798480|gb|ABB91903.1| DNA gyrase subunit B [Acholeplasma vituli]
          Length = 546

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D      +S +   I  G     ++TD+G G+  +
Sbjct: 17 EIVDNSIDESMVGYASEISLEIQKGNI--IRVTDDGRGIPVD 56


>gi|78042822|ref|YP_360841.1| extracellular solute-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994937|gb|ABB13836.1| extracellular solute-binding protein, family 3/sensory box
           histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 656

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 30  LIENSLDA----ESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA        ++   A  G K   ++ D G G+  + +        TSK
Sbjct: 552 LLLNAIDAIQDKG--EIKIKAAEYGDKIKIEVQDTGIGIPPQYLNQIFNLFFTSK 604


>gi|70704907|gb|AAZ06865.1| DNA gyrase subunit B [Acholeplasma vituli]
          Length = 538

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D      +S +   I  G     ++TD+G G+  +
Sbjct: 13 EIVDNSIDESMVGYASEISLEIQKGNI--IRVTDDGRGIPVD 52


>gi|256545594|ref|ZP_05472953.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC
          51170]
 gi|256398719|gb|EEU12337.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC
          51170]
          Length = 805

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 2  KIRKLSEKIINQIAAGEIIERPSIA-IKELIENSLDAESSRVETVIA-----GGGKSFFQ 55
          KI+    ++I Q+  GE +   +   + ELI+NS DA+++  +  I        G+    
Sbjct: 7  KIKV-DSRLIYQL--GEALIDNNKVALMELIKNSSDADATICKLTIDTSYQSEHGRGKIT 63

Query: 56 ITDNGFGMTS 65
          I DNG GM  
Sbjct: 64 IEDNGNGMNE 73


>gi|225023582|ref|ZP_03712774.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC
           23834]
 gi|224943677|gb|EEG24886.1| hypothetical protein EIKCOROL_00441 [Eikenella corrodens ATCC
           23834]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 29/216 (13%)

Query: 21  ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           + P+   +E I+N+ D A    +SR++  I   G     ++DNG G+      EE    +
Sbjct: 30  DSPTHICQEAIDNAADEALGGFASRIDVEIHEDG--SLSVSDNGRGIPVGLHPEENVPVV 87

Query: 69  PMAVQR-HCTSKISD---DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI 123
            +   R H   K +    D +   + G  G  +    A+S  L +  R            
Sbjct: 88  ELVFTRLHAGGKFNKTSGDGAYAFSGGLHGVGVSVTNALSRRLEVAVRREGCEYRIAFVG 147

Query: 124 SGEKISSVRPVAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                             GT + +       P    + +S   +   I  ++R  A+  P
Sbjct: 148 GDVVEPLTETGKCPAKDSGTTLRI------WPDAR-YFESPNYDIAEIERLLRAKAVLLP 200

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            V+ T +   +   +             +  ++ E 
Sbjct: 201 GVTVTLTRWHNGLPETQTWHYPDGLEGYLKTLLAEQ 236


>gi|145578013|gb|ABP82725.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar graciosensis]
          Length = 632

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          ++NS+D   A     +   I     +  ++TDNG G+ 
Sbjct: 42 VDNSIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|56962549|ref|YP_174275.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56908787|dbj|BAD63314.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 422

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 30  LIEN---SLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ N   S+D E + +   I      ++F++TDNG G+  E++    +   T+K  +D
Sbjct: 319 LLANAIESIDKEGT-ILLSIYEKNEMTYFEVTDNGAGIAEEDMHHLCEPGFTTKYRED 375


>gi|45358552|ref|NP_988109.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis S2]
 gi|44921310|emb|CAF30545.1| DNA topoisomerase VI B [Methanococcus maripaludis S2]
          Length = 664

 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR-HC 76
             + EL+ NSLDA  ES     +   I   G       I DNG G+  E +P    +   
Sbjct: 44  TIVHELVTNSLDACEESEILPEITVEIKKIGSETFGVNIEDNGPGIPPEFVPKVFGKMLA 103

Query: 77  TSKIS 81
            SK+ 
Sbjct: 104 GSKLH 108


>gi|320538929|ref|ZP_08038605.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson]
 gi|320031089|gb|EFW13092.1| DNA topoisomerase IV, subunit B [Serratia symbiotica str. Tucson]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 23/209 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R+E ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALANHAKRIEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  +   N  G       +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVKRDGNVYGIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + ++ +++  A+  P  ++ F
Sbjct: 148 VQDLTVTGTCGKRNTGTSVHFW----PDEQFFDSPRFSVSRLSHLLKAKAVLCPGVEIDF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVI 213
                 + +             E ++ ++
Sbjct: 204 IDQVNNTEQRWCYQDGLTDYLMEAVNGLM 232


>gi|197123428|ref|YP_002135379.1| integral membrane sensor hybrid histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196173277|gb|ACG74250.1| integral membrane sensor hybrid histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 702

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 22  RPSIAIKELIENS---LDAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R +  +  L++N+    D   +  V       G++  ++ D+G GM  + +    Q  
Sbjct: 454 RIAQVVGNLVQNAAKFTDGGGTVTVAVDATPAGRARVRVRDDGIGMPPDVLQRLFQPF 511


>gi|171920695|ref|ZP_02931917.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str.
          ATCC 33698]
 gi|185178763|ref|ZP_02554678.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC
          27817]
 gi|188024457|ref|ZP_02570760.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC
          27819]
 gi|188518714|ref|ZP_02557214.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str.
          ATCC 33695]
 gi|188524147|ref|ZP_02557455.2| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str.
          ATCC 33696]
 gi|195867481|ref|ZP_03079485.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC
          33175]
 gi|198273562|ref|ZP_03206098.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC
          27816]
 gi|209554430|ref|YP_002284500.1| DNA gyrase subunit B [Ureaplasma urealyticum serovar 10 str. ATCC
          33699]
 gi|225550770|ref|ZP_03771719.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC
          27814]
 gi|225551162|ref|ZP_03772108.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC
          27618]
 gi|171903433|gb|EDT49722.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 13 str.
          ATCC 33698]
 gi|184209375|gb|EDU06418.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 5 str. ATCC
          27817]
 gi|188018752|gb|EDU56792.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 7 str. ATCC
          27819]
 gi|188997713|gb|EDU66810.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 11 str.
          ATCC 33695]
 gi|195660124|gb|EDX53504.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 12 str.
          ATCC 33696]
 gi|195660957|gb|EDX54210.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 9 str. ATCC
          33175]
 gi|198250082|gb|EDY74862.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 4 str. ATCC
          27816]
 gi|209541931|gb|ACI60160.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 10 str.
          ATCC 33699]
 gi|225378977|gb|EEH01342.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 8 str. ATCC
          27618]
 gi|225379924|gb|EEH02286.1| DNA gyrase, B subunit [Ureaplasma urealyticum serovar 2 str. ATCC
          27814]
          Length = 650

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D A    ++ V+ +I   G    ++ D+G G+ 
Sbjct: 46 EIVDNSIDEAMGGFATVVKVIIKKDGV--IRVEDDGRGIP 83


>gi|76802387|ref|YP_327395.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas
          pharaonis DSM 2160]
 gi|76558252|emb|CAI49840.1| DNA topoisomerase II subunit B (DNA gyrase) [Natronomonas
          pharaonis DSM 2160]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI   G     + D+G G+  +
Sbjct: 41 VYEVVDNAIDEALAGYCDTIEVVINDDG--SVTVRDDGRGIPVD 82


>gi|18916411|dbj|BAB85501.1| DNA gyrase subunit B [Rhodopseudomonas sp. B29]
          Length = 303

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++ A GG     + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGYATRVEVILNADGG---VTVRDDGRGIPVD 53


>gi|329298650|ref|ZP_08255986.1| DNA topoisomerase IV subunit B [Plautia stali symbiont]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAKRVEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRNGEIYQIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + ++ +  V   N GT V             +F  S +   + +  +++  A+  P V 
Sbjct: 148 VQDMAVIGTVGKRNTGTSVHFW-------PDESFFDSPRFSVSRLKHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +  +          E ++ +
Sbjct: 201 IVFKDKVNDTEQTWLYQDGLTDYLNEAVNGL 231


>gi|319785549|ref|YP_004145025.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171437|gb|ADV14975.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 499

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 20  IER-PSIAIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IER  +     L+ N++D    S  +   I   G    +I D G G+ ++E     +   
Sbjct: 376 IERALAN----LVRNAIDHGGGSGTITIAIDENG--GVEIRDEGPGIPADEHENVFEPFY 429


>gi|302390804|ref|YP_003826624.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
 gi|302202881|gb|ADL11559.1| DNA gyrase subunit B [Acetohalobium arabaticum DSM 5501]
          Length = 639

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 81/246 (32%), Gaps = 28/246 (11%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +E +I  G  +   + D+G G+     P   +         
Sbjct: 45  VYEVVDNSIDEALAGYCDNIEVIIEPG--NVVTVIDDGRGIPISSHPNLNKPAVEIVMTV 102

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISS 130
            H   K  ++   + + G  G  +  + A+S    + +M     N    Q    G  +  
Sbjct: 103 LHAGGKFDNEGYKV-SGGLHGVGVSVVNALSEWLEVEVM---RDNKIYHQRYEEGVPVKD 158

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           +  +  +  +   ++         L   +S   E   +   ++ +A     +       +
Sbjct: 159 LTVIGESQASGTMIK-----FKPDLEIFESIDFEYKKLIKRLKELAYLNKGIKIEIKDKR 213

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
            +  K +    +G     + ++       +   +  ++ E        I  +N    +  
Sbjct: 214 RDEIKTDIFQYDGGIVSFVQELNENKDPIHEEPIYFETEEEDNHIEVAI-QYNETYVDNI 272

Query: 251 YVFING 256
           + F N 
Sbjct: 273 FTFANN 278


>gi|229065153|ref|ZP_04200446.1| DNA gyrase subunit B [Bacillus cereus AH603]
 gi|228716182|gb|EEL67901.1| DNA gyrase subunit B [Bacillus cereus AH603]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 47 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 84


>gi|229014660|ref|ZP_04171774.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
 gi|229170197|ref|ZP_04297883.1| DNA gyrase subunit B [Bacillus cereus AH621]
 gi|228613298|gb|EEK70437.1| DNA gyrase subunit B [Bacillus cereus AH621]
 gi|228746671|gb|EEL96560.1| DNA gyrase subunit B [Bacillus mycoides DSM 2048]
          Length = 642

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 49 EIVDNSIDEALAGYCDEINVSIEED--NSIVVTDDGRGIP 86


>gi|300788500|ref|YP_003768791.1| probable chaperone protein [Amycolatopsis mediterranei U32]
 gi|299798014|gb|ADJ48389.1| probable chaperone protein [Amycolatopsis mediterranei U32]
          Length = 1249

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 29/107 (27%)

Query: 22  RPSIAIKELIENSLDA---------ESSRVETVI---AGGGKSFFQITDNGFGMT----S 65
            P++ ++EL++N++DA            R    I      G  +F+I D+G GM      
Sbjct: 495 NPNVFVRELLQNAIDAVRLRNILDIGRRRGTVAISCWEDQGSIWFRIDDDGIGMDLQTIR 554

Query: 66  EEIPMAVQRHCTSKISDDFSN-IHTFGFRGEALPSIGAVSHLTLMSR 111
           E      + +  S   +D +  + T G          + S  + +SR
Sbjct: 555 EYFLQVGRSYYNS---EDLNRELRTLGR---------SRSRFSAISR 589


>gi|255327016|ref|ZP_05368092.1| sensor histidine kinase MtrB [Rothia mucilaginosa ATCC 25296]
 gi|255296233|gb|EET75574.1| sensor histidine kinase MtrB [Rothia mucilaginosa ATCC 25296]
          Length = 583

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 20  IERPSIAIKELIENSLDAESSR-VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           IER    ++ L+ N+++   SR ++  +     +    + D+G G++ +E      R   
Sbjct: 435 IER---VLRNLLYNAIEHGESRPIDVYVDANATNLGIAVRDHGIGLSEDEAVQVFNRFW- 490

Query: 78  SKISDDFSNIHTFGFRGEALPSIGA 102
                D S   T G  G  L SI A
Sbjct: 491 ---RADTSRKRTLGGTGLGL-SIAA 511


>gi|222100717|ref|YP_002535285.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
 gi|221573107|gb|ACM23919.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
          Length = 636

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A     ++  +   G    ++ DNG G+      EE   A++     
Sbjct: 38  VYEVVDNSVDESLAGYCDWIKVTLHEDG--SVEVEDNGRGIPVDVHPEEGRSALEVVFTV 95

Query: 74  RHCTSKISDDFSNIH 88
            H   K S D   I 
Sbjct: 96  LHAGGKFSKDSYKIS 110


>gi|153007235|ref|YP_001381560.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030808|gb|ABS28576.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. Fw109-5]
          Length = 351

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 22/78 (28%)

Query: 21  ERPSIAIKELIENSLDA-----ESSRVETVIAGG----------GKSF----FQITDNGF 61
           E+ +  +  L+ N+LDA      +   +  +  G          G++       + DNG 
Sbjct: 235 EKLTQVLLNLVRNALDAVAGRQGA---QIALETGVSSLRLRSASGRTRPLVRLSVQDNGS 291

Query: 62  GMTSEEIPMAVQRHCTSK 79
           G+    +        TSK
Sbjct: 292 GIAEPMLHRLFTPFATSK 309


>gi|19909649|dbj|BAB87020.1| DNA gyrase subunit B [Thermotoga neapolitana DSM 4359]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
          + E+++NS+D   A     ++  +   G    ++ DNG G+      EE   A++     
Sbjct: 9  VYEVVDNSVDESLAGYCDWIKVTLHEDG--SVEVEDNGRGIPVDVHPEEGRSALEVVFTV 66

Query: 74 RHCTSKISDDFSNIH 88
           H   K S D   I 
Sbjct: 67 LHAGGKFSKDSYKIS 81


>gi|319780663|ref|YP_004140139.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166551|gb|ADV10089.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 533

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDA--ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIP 69
           +I+A    E  +I +  LI+NS  A   + +V     + GGK+   ++D+G G++     
Sbjct: 428 RISA----ENAAIVLANLIDNS--ARHGAMQVSVSATSAGGKASILVSDDGAGISPSNRA 481

Query: 70  MAVQRHCT 77
              +   T
Sbjct: 482 RIFEPFFT 489


>gi|315646766|ref|ZP_07899881.1| two-component sensor histidine kinase [Paenibacillus vortex V453]
 gi|315277696|gb|EFU41020.1| two-component sensor histidine kinase [Paenibacillus vortex V453]
          Length = 307

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 30  LIENSLDAES--SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N + A S  +R++  I+   ++   Q++DNG G++  ++P    R   S
Sbjct: 210 LIQNVI-AHSEGTRIDLQISENEQNVMVQVSDNGKGISPNDLPHIFDRLYQS 260


>gi|312126308|ref|YP_003991182.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776327|gb|ADQ05813.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 566

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 27/94 (28%)

Query: 1   MKIRKLSEKIINQIAAGE---IIE----RPSIAIKELIENSLDAESSRVETVIAGGGKS- 52
           M+I    +K    + + E   +IE    R    +  LI N++          +  GG+  
Sbjct: 429 MRIHA-KKKNQKLLCSAEENVVIEADRDRLEQVLINLINNAV--------VYVQEGGQIE 479

Query: 53  ----------FFQITDNGFGMTSEEIPMAVQRHC 76
                        + DNG G+  +++P   +R  
Sbjct: 480 VGLEKDEEHVKITVKDNGPGIPEDDLPRIFERFY 513


>gi|94497614|ref|ZP_01304183.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58]
 gi|94423031|gb|EAT08063.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. SKA58]
          Length = 658

 Score = 45.4 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++R+E  +  G  +   ITDNG G+  +
Sbjct: 52 EVLDNSMDEAVAGHATRIEVTLEPG--NRLTITDNGRGIPVD 91


>gi|149280550|ref|ZP_01886667.1| two-component sensor histidine kinase (sensor protein AtoS)
            [Pedobacter sp. BAL39]
 gi|149228732|gb|EDM34134.1| two-component sensor histidine kinase (sensor protein AtoS)
            [Pedobacter sp. BAL39]
          Length = 1225

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 30   LIENSLDA-ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            L++N+++A ++      ++  +I        ++ DNG G+   E       + T+K
Sbjct: 1132 LLKNAIEARKADMKCLIKINILIDENEV-LVEVEDNGKGIPEAEQEKIFVPNFTTK 1186


>gi|86156795|ref|YP_463580.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773306|gb|ABC80143.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 507

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 18  EIIERPSIAIKELIENSLDAESSR-VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +++   +        N+L   + R +   +   GG++  ++ D G G+   ++     R 
Sbjct: 380 QVLTNLAS-------NALKYGAGRPITIGLRREGGRAVLRVRDRGIGIPPADLERIFGRF 432


>gi|319936688|ref|ZP_08011101.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
 gi|319808245|gb|EFW04810.1| DNA gyrase subunit B [Coprobacillus sp. 29_1]
          Length = 640

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + ++ ++  G     ++ DNG GM 
Sbjct: 46 EIVDNSIDEALAGFCNEIKVILEKG--DIVKVIDNGRGMP 83


>gi|255322451|ref|ZP_05363596.1| histidine kinase [Campylobacter showae RM3277]
 gi|255300359|gb|EET79631.1| histidine kinase [Campylobacter showae RM3277]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 26 AIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSE 66
          AI EL++NS DA ++  +              I+DNGFGM + 
Sbjct: 26 AILELVKNSYDACATECKVEFYSRNKELEKIVISDNGFGMNAN 68


>gi|297544311|ref|YP_003676613.1| histidine kinase [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
 gi|296842086|gb|ADH60602.1| histidine kinase [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIA-GGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  +   I     K   ++   D+G GM  E +        T
Sbjct: 11 LSQNSIRAGAKNICIEINIDTSKDMLKVSIEDDGCGMKEELLKKVTDPFVT 61


>gi|163850689|ref|YP_001638732.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163662294|gb|ABY29661.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 626

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRH 75
           R S  +  L+ N+LDA      +  V      G G+    + DNG G+    +    +  
Sbjct: 496 RLSQVLVNLVGNALDAVKGRPGA-EVAVRAWAGEGQVVLSVEDNGPGLDPAALARLFEPF 554

Query: 76  CTSK 79
            T+K
Sbjct: 555 FTTK 558


>gi|139439853|ref|ZP_01773218.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC
          25986]
 gi|133774781|gb|EBA38601.1| Hypothetical protein COLAER_02252 [Collinsella aerofaciens ATCC
          25986]
          Length = 650

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+++NS+D   A   + ++  +     +   + DNG G+  +E P
Sbjct: 17 EIVDNSVDEAMAGFCTEIQVTVHAD--NSITVVDNGRGIPVDEHP 59


>gi|111306081|gb|AAI21377.1| morc2 protein [Xenopus (Silurana) tropicalis]
          Length = 561

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 29  ELIENSLDAESSRVET-VIA----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           EL++N+ DA+++R++   +      GG     + D+G GM   E    +Q   ++K + +
Sbjct: 35  ELVDNARDADATRIDIFTVKREELRGGFMLCFL-DDGAGMDPSEAASVIQFGRSAKRTPE 93

Query: 84  FSNIHTFG 91
              I  +G
Sbjct: 94  SIQIGQYG 101


>gi|317123186|ref|YP_004097298.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043]
 gi|315587274|gb|ADU46571.1| DNA gyrase subunit B [Intrasporangium calvum DSM 43043]
          Length = 704

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  +  ++  + A GG    ++ DNG G+ ++
Sbjct: 60  VYEIVDNSVDEALAGYADTIDITLLADGG---VRVKDNGRGIPTD 101


>gi|307564794|ref|ZP_07627322.1| DNA topoisomerase IV subunit B [Prevotella amnii CRIS 21A-A]
 gi|307346516|gb|EFN91825.1| DNA topoisomerase IV subunit B [Prevotella amnii CRIS 21A-A]
          Length = 646

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 95/340 (27%), Gaps = 41/340 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A  +R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 50  LKEVIDNSIDEFKMEAG-NRIEIDIEDN--LRVTVRDYGRGIPQGKLIEAVSMLNTGGKY 106

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S        + S                K       
Sbjct: 107 DSKAFK-KSVGLNGVGVKAVNALSS-----KFEVKSFRDGKVRHLCFEKGCLKDDKTSKS 160

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +                K+ +    ++  ++R        ++          +
Sbjct: 161 NDENGTFIYFE-------PDNTLFKNYKFLDEIVETMLRNYTYLNTGLTIMYNGRRILSR 213

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G          +A 
Sbjct: 214 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAF 273

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
           + ++    +    K+    IR      I +    P+     ++        + P    I 
Sbjct: 274 KEHIAKTIKEYYGKYEYIDIRNGLVAAIAINVEEPIFESQTKVKLG--STLMEPNGDTIN 331

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
                 I +FI  ++   ++      + +L  K+  +  +
Sbjct: 332 ----KYIGDFIKLNVDNYLHIHKEDCADILENKIKETERE 367


>gi|78355050|ref|YP_386499.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217455|gb|ABB36804.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 797

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 78/246 (31%), Gaps = 31/246 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A    +V   +     +   + DNG G+  +  P   +         
Sbjct: 44  VYEVVDNSIDEAMAGYCDKVTVKLHLD--NSVTVIDNGRGIPVDIHPKEGRPAVEVVMTV 101

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQI-AISGEKISSV 131
            H   K  +D   + + G  G  +  + A+S  L +  R        +       K    
Sbjct: 102 LHAGGKFDNDSYKV-SGGLHGVGVSCVNALSEYLEVTVRRDGYKYHHRFERGVPVKELER 160

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
                  GT +  R             ++ Q   +++      +A   P +   F  I  
Sbjct: 161 VGETDLRGTTIRFR-------PDEEIFETNQFSFDILKKRFEELAYLNPGLEVEF--IDE 211

Query: 192 NRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                      G   E +  +  GE  +++ +  + +S+ + +        +N G     
Sbjct: 212 RTGDTASFHYEGGIREFVKNLNSGEGGVHSIIFASGESDNVMVDFAL---QYNAGYKENM 268

Query: 251 YVFING 256
             F N 
Sbjct: 269 LTFANN 274


>gi|261407153|ref|YP_003243394.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261283616|gb|ACX65587.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 623

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 12/56 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV-----QRH 75
           L+ENSL     D    R+E V+    +   +I DNG G++ E+I   +     +RH
Sbjct: 520 LVENSLYHGLDDNG--RIEVVVRKNDRLEIEIRDNGGGISEEKIEALLEQEQTERH 573


>gi|119713193|gb|ABL97261.1| DNA topoisomerase IV subunit B [uncultured marine bacterium
           EB0_50A10]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 81/201 (40%), Gaps = 31/201 (15%)

Query: 22  RPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
            P+  I+E+++NS+D A     S ++  +   G    +++D+G GM  +          E
Sbjct: 32  NPNHLIQEVLDNSVDEALSGHCSNIKIAVLKDG--NIRVSDDGRGMPVDIHPEHKVSGVE 89

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGE 126
           + +  + H  +K S D  N  + G  G  +  + A+S  L +  +   +        +G 
Sbjct: 90  LIL-CKLHAGAKFSGDDYN-FSGGLHGVGVSVVNALSENLEVRVK-RDSKEHQITFSNGN 146

Query: 127 KISSVRPVA----MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
           K+S ++ V      N GT +  +            +K+ +        +++  A+  P +
Sbjct: 147 KVSELKEVGEVGLRNTGTSITFKPNPKYFEDIEVQIKTLK-------HLLKAKAVLCPGL 199

Query: 183 SFTFSTIKSNRYKMNFQSTNG 203
              F+  K +  K  +   +G
Sbjct: 200 RIEFNNEKKSNDKEKWYFEDG 220


>gi|323494005|ref|ZP_08099121.1| hypothetical protein VIBR0546_17158 [Vibrio brasiliensis LMG 20546]
 gi|323311632|gb|EGA64780.1| hypothetical protein VIBR0546_17158 [Vibrio brasiliensis LMG 20546]
          Length = 651

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA  ++    +   +A    +    + DNG G+ +++IP       
Sbjct: 543 RLEQVLVNLISNAIDAVENKPEPLIVVSVARVASEVTIAVKDNGKGILADDIPHIFDPFY 602

Query: 77  TSK 79
           T K
Sbjct: 603 TRK 605


>gi|319405640|emb|CBI79263.1| topoisomerase protein [Bartonella sp. AR 15-3]
          Length = 692

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P
Sbjct: 89  EIIDNAMDEAVAGYADLIDVSLDSQG--YITVTDNGRGIPIENHP 131


>gi|269217830|ref|ZP_06161684.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212765|gb|EEZ79105.1| DNA gyrase, B subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 693

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     +E  I A GG    ++ DNG G+   E P
Sbjct: 54  ERGLHHCVYEVVDNSVDEALAGICDHIEVTILADGGL---RVRDNGRGIPVNEHP 105


>gi|240849736|ref|YP_002971124.1| two-component sensor histidine kinase BatS [Bartonella grahamii
           as4aup]
 gi|240266859|gb|ACS50447.1| two-component sensor histidine kinase BatS [Bartonella grahamii
           as4aup]
          Length = 594

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 22  RPSIAIKELIENS---LDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+EN+   +     ++   +     +    I DNG G+ SE I    +R  T
Sbjct: 478 RLGQVISNLLENARSFIPRNRGKICITMKSHASTLILTIEDNGPGIRSENIERIFERFYT 537

Query: 78  SKISDDFSNIHT-FG 91
            + ++D    ++  G
Sbjct: 538 DRPNEDAFGQNSGLG 552


>gi|226945657|ref|YP_002800730.1| ATP binding/ATPase domain-containing protein [Azotobacter
          vinelandii DJ]
 gi|226720584|gb|ACO79755.1| ATP binding/ATPase (HATPase_c) domain-containing protein
          [Azotobacter vinelandii DJ]
          Length = 723

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKS----FFQITDNGFGMT 64
          A+ EL++N+ DA++  V   +   G         + D+G GM 
Sbjct: 37 AVFELVKNAYDADAETVTVTLK--GLRTASPTIVVEDDGDGMA 77


>gi|298245656|ref|ZP_06969462.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297553137|gb|EFH87002.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 737

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++    D  +  V + +         ++D G G+  EE+    +R+
Sbjct: 637 LLDNAIKYSPDGGAITVVSELEDL-CVHISVSDQGVGIPPEELEHVFERY 685


>gi|295702247|ref|YP_003595322.1| DNA gyrase subunit B [Bacillus megaterium DSM 319]
 gi|294799906|gb|ADF36972.1| DNA gyrase, B subunit [Bacillus megaterium DSM 319]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +  +I     +   + DNG G+ 
Sbjct: 45 EIVDNSIDEALAGYCDEINVIIEKD--NSITVKDNGRGIP 82


>gi|225420388|ref|ZP_03762691.1| hypothetical protein CLOSTASPAR_06733 [Clostridium asparagiforme
           DSM 15981]
 gi|225040965|gb|EEG51211.1| hypothetical protein CLOSTASPAR_06733 [Clostridium asparagiforme
           DSM 15981]
          Length = 605

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 30  LIENSL-----D-AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           LIENS+     D A  S ++  I    G     + DNG GM  E +    +R
Sbjct: 486 LIENSIYHGIRDKAGHSTIKIKIDSRDGWVAITVLDNGLGMDRERLEQLKKR 537


>gi|144898434|emb|CAM75298.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 957

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDA-------ESSRVETVIAGGGKSFF-QI 56
           +L E   + I  G  +E     +  L+ N+ DA          R+   +   G      +
Sbjct: 522 QLPESCPDLIGRGNQLE---QVVVALLTNARDAVCARHKPGKRRISLSLEQRGDDLILSV 578

Query: 57  TDNGFGMTSEEIPMAVQRHCTSK 79
            DNG G+  +          T+K
Sbjct: 579 EDNGGGIPDDLWSRVFTPFFTTK 601


>gi|18977951|ref|NP_579308.1| DNA topoisomerase VI subunit B [Pyrococcus furiosus DSM 3638]
 gi|23822280|sp|Q8U0K8|TOP6B_PYRFU RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|18893723|gb|AAL81703.1| DNA topoisomerase VI, subunit b [Pyrococcus furiosus DSM 3638]
          Length = 568

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTSEEIPMAV 72
          I   +  I E + NSLDA  E+     V   I   GK      + DNG G+  + IP   
Sbjct: 33 IRSLTTVIHEAVTNSLDACEEAGILPYVRVEIEELGKEHYKVIVEDNGPGIPEDYIPHVF 92


>gi|325298759|ref|YP_004258676.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides salanitronis DSM 18170]
 gi|324318312|gb|ADY36203.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides salanitronis DSM 18170]
          Length = 462

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 30  LIENSLD--AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN++      + +   +   G ++  +++DNG G+ ++E+    ++   S
Sbjct: 364 LLENAVKYARGEAVITITLRQTGNRTDIEVSDNGRGIPADELKHIFEKFYRS 415


>gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
 gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
          Length = 465

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 21  ERPSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
            R    I  L++N++      +  +   +    K  + ++ DNG G+  E++P  + R  
Sbjct: 348 TRLEQIIFNLLDNAIKYSPPGAKTI-LSVNNKKKDVYIKVRDNGKGIPEEDLPYILNRFY 406

Query: 77  TSKISDDFSNIHTFGFRGEALP 98
                 D S   + G  G  L 
Sbjct: 407 ----RVDKSRTRSLGGTGLGLA 424


>gi|312794584|ref|YP_004027507.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181724|gb|ADQ41894.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 565

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 27/94 (28%)

Query: 1   MKIRKLSEKIINQIAAGE---IIE----RPSIAIKELIENSLDAESSRVETVIAGGGKS- 52
           M+I    +K    + + +   +IE    R    +  LI N++          +  GG+  
Sbjct: 429 MRIHA-KKKNQKLLCSTQENVVIEADRDRLEQVLINLINNAV--------VYVQEGGQIE 479

Query: 53  ----------FFQITDNGFGMTSEEIPMAVQRHC 76
                        + DNG G+  E++P   +R  
Sbjct: 480 VGLEKDEEHVRITVKDNGPGIPEEDLPRIFERFY 513


>gi|294496880|ref|YP_003560580.1| DNA gyrase subunit B [Bacillus megaterium QM B1551]
 gi|294346817|gb|ADE67146.1| DNA gyrase, B subunit [Bacillus megaterium QM B1551]
          Length = 638

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +  +I     +   + DNG G+ 
Sbjct: 45 EIVDNSIDEALAGYCDEINVIIEKD--NSITVKDNGRGIP 82


>gi|258650278|ref|YP_003199434.1| DNA gyrasesubunit B [Nakamurella multipartita DSM 44233]
 gi|258553503|gb|ACV76445.1| DNA gyrase, B subunit [Nakamurella multipartita DSM 44233]
          Length = 670

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 27/137 (19%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE----------EIPMA 71
           ++E+++NS+D   A  + RVE ++   GG     + DNG G+  E          E+ + 
Sbjct: 42  VQEVVDNSVDEAMAGYADRVEVILRADGG---VTVIDNGRGIPVEMHPKEKKPTVEVVLT 98

Query: 72  VQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKI 128
           V  H   K   D   + + G  G  +  + A+S    + +     ++    + +    K 
Sbjct: 99  VL-HAGGKFDSDSYAV-SGGLHGVGVSVVNALSTRLDVEI----HRDGHAYRQSYRYAKP 152

Query: 129 SSVRPVAMNPGTIVEVR 145
             +  +  +  T   V 
Sbjct: 153 GPLETIGPSSRTGSSVT 169


>gi|227873174|ref|ZP_03991465.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841005|gb|EEJ51344.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 654

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I     +   + DNG G+  +
Sbjct: 56 VYEIVDNSVDEALAGFCNTITVKIHQN--NSITVRDNGRGIPVD 97


>gi|229542310|ref|ZP_04431370.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
 gi|229326730|gb|EEN92405.1| DNA gyrase, B subunit [Bacillus coagulans 36D1]
          Length = 641

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   + DNG G+ 
Sbjct: 47 EIVDNSIDEALAGFCDEINVFIEKD--NSITVKDNGRGIP 84


>gi|298208510|ref|YP_003716689.1| DNA topoisomerase IV subunit B [Croceibacter atlanticus HTCC2559]
 gi|83848433|gb|EAP86302.1| DNA topoisomerase IV subunit B [Croceibacter atlanticus HTCC2559]
          Length = 618

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 37/245 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++NS+D     A    +E  I G       + D G G+   ++   V +  T    
Sbjct: 46  LKEVLDNSIDEFVMNAG-KTIEISIQG---ERVIVRDYGRGIPLGKVKDVVSKMNTGGKY 101

Query: 78  -SKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            SK    S   + + T      A+ ++ +   +   SR  ++ +      +      +  
Sbjct: 102 DSKAFKKSVGLNGVGTK-----AVNALSSYFRVE-SSRDGKSASAEFAQGNLTDEEFLDE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K+ +  +  +  +++      P ++       F +
Sbjct: 156 TSRRRGTKVT-------FIPDEAIFKNYKYRSEYVAKMLKNYVYLNPGLTIVFNGERFYS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
               +  ++      +    I  + G+D          + +E       G          
Sbjct: 209 ENGLKDLLSDTIREDDRLYPIIHLKGDDIEVAITHSKTQYSEEYHSFVNG--QHTTQGGT 266

Query: 249 QFYVF 253
               F
Sbjct: 267 HQSAF 271


>gi|330996821|ref|ZP_08320690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329572264|gb|EGG53923.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 655

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 63/222 (28%), Gaps = 32/222 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 55  LKEVIDNSIDEFKMNAG-RRIEITVEDN--LRVSVRDYGRGIPLGKLIEAVSMLNTGGKY 111

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S        A          S  P 
Sbjct: 112 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVRSHRDGEMRRATFERGILTSESTEPT 165

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           A   GT +                K+    T  I  ++R        ++          +
Sbjct: 166 ADENGTFIYFE-------PDCALFKNYTFRTEFIETMLRNYTYLNTGLTIMFNGRRIHSR 218

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
           +    +   +   +    I  + GED         +   E  
Sbjct: 219 NGLVDLLNDNMTNDGLYPIIHLKGEDIEIAFTHTGQYGEEYY 260


>gi|319780214|ref|YP_004139690.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166102|gb|ADV09640.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 594

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 17  GEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPM 70
           G++I         LIEN+      D     +   +A  GK     + DNG G+ ++ I  
Sbjct: 481 GQVITN-------LIENARSFVPEDHG--HISLSLARAGKFNIVTVDDNGPGIRADNIDR 531

Query: 71  AVQRHCT 77
             +R  T
Sbjct: 532 IFERFYT 538


>gi|302870793|ref|YP_003839429.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573652|gb|ADL41443.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 566

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 15/88 (17%)

Query: 1   MKIRKLSEKIINQIAAGE---IIE----RPSIAIKELIENSL----DAESSRVETVIA-G 48
           M+I    +K    + + E   +IE    R    +  LI N++    +    ++E  +   
Sbjct: 429 MRIHA-KKKNQKLLCSAEENVVIEADRDRLEQVLINLINNAVVYVQEGG--QIEVGLKKD 485

Query: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           G      + DNG G+  +++P   +R  
Sbjct: 486 GSYVKITVDDNGPGIPEDDLPRIFERFY 513


>gi|223928101|gb|ACN23816.1| osmosensitive K+ channel histidine kinase [Clostridium sp.
           enrichment culture clone 7-14]
          Length = 468

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D    +V   +   GG++   + DNG G+  E++P   QR  
Sbjct: 363 LVDNAVKYSHDGG--QVWISLHREGGQAVLAVADNGVGIPQEDLPRIFQRFY 412


>gi|224075523|ref|XP_002304665.1| predicted protein [Populus trichocarpa]
 gi|222842097|gb|EEE79644.1| predicted protein [Populus trichocarpa]
          Length = 419

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 29 ELIENSLDA---ESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
          EL++N++D     +S V   +    K F     + DNG GMT + +   +    ++K
Sbjct: 24 ELLDNAVDEVGHGASCVSIDVLNNSKDFSKMLLVEDNGGGMTPDRMRACMSLGYSAK 80


>gi|238793656|ref|ZP_04637279.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909]
 gi|238727071|gb|EEQ18602.1| DNA topoisomerase 4 subunit B [Yersinia intermedia ATCC 29909]
          Length = 631

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++TD+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVTDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELIMCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQELQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDQVNNTEQRWCYADGLTDYLMEAVNGL 231


>gi|94985015|ref|YP_604379.1| histidine kinase [Deinococcus geothermalis DSM 11300]
 gi|94555296|gb|ABF45210.1| histidine kinase [Deinococcus geothermalis DSM 11300]
          Length = 388

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 42  VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           ++  +  G G+++ Q+ D+G G+ +E++P        S+++
Sbjct: 291 IQVRVWQGEGETYVQVRDDGEGIPAEDLPHLFAAFEQSRLT 331


>gi|332520465|ref|ZP_08396927.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Lacinutrix algicola 5H-3-7-4]
 gi|332043818|gb|EGI80013.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Lacinutrix algicola 5H-3-7-4]
          Length = 619

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 76/232 (32%), Gaps = 35/232 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++NS+D     A    +E  +   G     + D G G+   ++   V +  T    
Sbjct: 46  LKEVLDNSIDEFVMGAG-KTIEISVQ--GSKVI-VRDYGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -SKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            SK    S   + + T      A+ ++ +   +   SR  ++ +      +      +  
Sbjct: 102 DSKAFKKSVGLNGVGTK-----AVNALSSYFRVE-SSRDGKSASADFEQGNLVDEEFLEE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K+ +  +  +  +++      P ++       + +
Sbjct: 156 TSRRKGTKVS-------FIPDEIIFKNYKFRSEYVVKMLKNYVYLNPGLTIVFNGEKYYS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIP 240
               +  +  ++T  +    I  + G+D          + +E       G  
Sbjct: 209 ENGLKDLLAEKTTETDLLYPIIHLRGDDIEVALTHSKTQYSEEYNSFVNGQN 260


>gi|228903284|ref|ZP_04067415.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|228967885|ref|ZP_04128896.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228791752|gb|EEM39343.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228856245|gb|EEN00774.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 392

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 300 LIKNAIEAMSVGGTITIKVTVKEG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 351


>gi|227549441|ref|ZP_03979490.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078518|gb|EEI16481.1| DNA gyrase subunit B [Corynebacterium lipophiloflavum DSM 44291]
          Length = 662

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + RV+  + A GG    ++ DNG G+  E
Sbjct: 17 EVVDNSVDEAMAGYADRVDVTLLADGG---IEVIDNGRGIPVE 56


>gi|55377342|ref|YP_135192.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049]
 gi|55230067|gb|AAV45486.1| DNA gyrase subunit B [Haloarcula marismortui ATCC 43049]
          Length = 642

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     ++  I   G     ++D+G G+  +
Sbjct: 42 VYEVVDNAIDEALAGYCDNIDVTIHDDG--SVSVSDDGRGIPVD 83


>gi|75760788|ref|ZP_00740807.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218899933|ref|YP_002448344.1| sporulation kinase [Bacillus cereus G9842]
 gi|74491725|gb|EAO54922.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218542352|gb|ACK94746.1| sporulation kinase [Bacillus cereus G9842]
          Length = 406

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVKEG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|163847236|ref|YP_001635280.1| ATPase domain-containing protein [Chloroflexus aurantiacus
          J-10-fl]
 gi|222525077|ref|YP_002569548.1| putative anti-sigma regulatory factor, serine/threonine protein
          kinase [Chloroflexus sp. Y-400-fl]
 gi|163668525|gb|ABY34891.1| ATP-binding region ATPase domain protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222448956|gb|ACM53222.1| putative anti-sigma regulatory factor, serine/threonine protein
          kinase [Chloroflexus sp. Y-400-fl]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 15 AAG---EIIERPSIAIKELIENSLDAE-----SSRVETVIAGGGKSF-FQITDNGFGMTS 65
          AAG   E +E   +A+ E + N++D       +  V       G+    +++D G G+  
Sbjct: 28 AAGFSPEQVEDLKLAVSEAVNNAIDHGNRGDVAKLVAVTFEIDGEKLEIRVSDQGGGIER 87

Query: 66 EEIP 69
           ++ 
Sbjct: 88 IDVS 91


>gi|303236740|ref|ZP_07323319.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella disiens FB035-09AN]
 gi|302482908|gb|EFL45924.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella disiens FB035-09AN]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA---ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L +N++DA   E+  +   +    +    +++D G G+  +++    +   T+K
Sbjct: 300 LCKNAVDAMGGEAGTITLKVETYNQQAIIEVSDTGKGIKRKDLRNVFRPGFTTK 353


>gi|297564812|ref|YP_003683784.1| DNA gyrase subunit B [Meiothermus silvanus DSM 9946]
 gi|296849261|gb|ADH62276.1| DNA gyrase, B subunit [Meiothermus silvanus DSM 9946]
          Length = 645

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++NS+D   A  ++ + T +   G     + DNG G+  +
Sbjct: 44 KEILDNSVDEALAGYATEIITTLHPDG--SITVEDNGRGIPVD 84


>gi|207727770|ref|YP_002256164.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206591011|emb|CAQ56623.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum MolK2]
          Length = 665

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAES-------SRVETVI---AGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+LDA +        R++  I    G        + DNG G++++ +P   +   T+
Sbjct: 554 LIGNALDAIAANDLSRPGRIDIDIGPADGAPAQLCIVVRDNGPGISADAMPHLFEPFFTT 613

Query: 79  K 79
           K
Sbjct: 614 K 614


>gi|126666428|ref|ZP_01737407.1| sensor histidine kinase [Marinobacter sp. ELB17]
 gi|126629229|gb|EAZ99847.1| sensor histidine kinase [Marinobacter sp. ELB17]
          Length = 572

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           L+ N++ A        RV   +   G + +  ++DNG G+TSE +    +   T+KI+
Sbjct: 475 LVMNAIQALEGMGG--RVTIRVKQHGLAVYISVSDNGPGVTSEHLSHLTEPFFTTKIN 530


>gi|94967039|ref|YP_589087.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345]
 gi|94549089|gb|ABF39013.1| DNA gyrase subunit B [Candidatus Koribacter versatilis Ellin345]
          Length = 879

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           + E+++NS+D   A  + R++  I     +   + DNG G+ + ++ +
Sbjct: 68  VYEVVDNSVDEALAGHADRIDVTIHID--NSITVIDNGRGIPTGDMDI 113


>gi|237756786|ref|ZP_04585277.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691052|gb|EEP60169.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 23  PSIAIKELIENSLDAESSR--VETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            SIA+K LIEN++        VE      GK     + D G G+  E IP+  +R  
Sbjct: 231 LSIALKNLIENAIKYNVQNGIVEVNAKTDGKYDTISVIDTGIGIPPESIPLVFERFY 287


>gi|98991100|gb|ABF60568.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
          Length = 557

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +++++ +I         + DNG G+  E
Sbjct: 13 EIVDNSIDEVLANFANKIKIIINKD--ESITVVDNGRGIPIE 52


>gi|98991102|gb|ABF60569.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
 gi|98991104|gb|ABF60570.1| DNA gyrase subunit B [Spiroplasma phoeniceum]
          Length = 557

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +++++ +I         + DNG G+  E
Sbjct: 13 EIVDNSIDEVLANFANKIKIIINKD--ESITVVDNGRGIPIE 52


>gi|121598478|ref|YP_991553.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Burkholderia mallei SAVP1]
 gi|124384225|ref|YP_001027374.1| putative C4-dicarboxylate transport sensor protein [Burkholderia
           mallei NCTC 10229]
 gi|121227288|gb|ABM49806.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Burkholderia mallei SAVP1]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 22  RPSIAIKELIENSLDA-ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R    +  L+ N++ A  + R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 176 RLEQVLINLLGNAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 235


>gi|15639990|ref|NP_219443.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum
          str. Nichols]
 gi|189026229|ref|YP_001934001.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14]
 gi|3913790|sp|O08399|GYRB_TREPA RecName: Full=DNA gyrase subunit B
 gi|2102700|gb|AAB66715.1| DNA gyrase subunit B [Treponema pallidum]
 gi|3323330|gb|AAC65954.1| DNA gyrase, subunit B (gyrB) [Treponema pallidum subsp. pallidum
          str. Nichols]
 gi|189018804|gb|ACD71422.1| DNA gyrase, subunit B [Treponema pallidum subsp. pallidum SS14]
 gi|291060363|gb|ADD73098.1| DNA gyrase, B subunit [Treponema pallidum subsp. pallidum str.
          Chicago]
          Length = 637

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N +D   A    R+  V+  G  +  ++ DNG G+  +
Sbjct: 39 VYEVVDNCIDEAMAGYCDRITVVLEQG--NVVRVEDNGRGIPVD 80


>gi|89070780|ref|ZP_01158033.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516]
 gi|89043622|gb|EAR49829.1| DNA topoisomerase IV subunit B [Oceanicola granulosus HTCC2516]
          Length = 652

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A  ++R+E  +         I DNG GM  EE P 
Sbjct: 48 VAEVLDNSMDEAVAGHANRIEVELHDD--HAITIRDNGRGMPFEEHPK 93


>gi|312113758|ref|YP_004011354.1| PAS/PAC sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218887|gb|ADP70255.1| PAS/PAC sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 470

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA--ESSR--VETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+LDA        +E      GG    ++ D+G G+  + +    +   T+K
Sbjct: 368 LIQNALDAMDGDPHPLIEIDATEDGGFVALRVRDHGPGIAPDGMQKLFEPFFTTK 422


>gi|241665471|ref|YP_002983830.1| histidine kinase [Ralstonia pickettii 12D]
 gi|240867498|gb|ACS65158.1| histidine kinase [Ralstonia pickettii 12D]
          Length = 615

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 22  RPSIAIKELIENSLDAESSR-------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQ 73
           R    +  LI N++DA +         V   +    K     + D G G+ ++ +P   +
Sbjct: 501 RLEQVLVNLIRNAIDASAETPQPRSATVHVSVEPVEKWVRITVRDFGPGIPADVLPRLFE 560

Query: 74  RHCTSK 79
              T+K
Sbjct: 561 PFFTTK 566


>gi|196233457|ref|ZP_03132300.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196222453|gb|EDY16980.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 721

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 30  LIENSLDAESS--RVETVIAGGGKS-------FFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           LI NS+DA  S  ++   +    KS         ++ D G G+  E +   +  + T+K 
Sbjct: 603 LISNSIDASPSGSQIRVQLERLAKSDVNREWWRVRVIDQGEGIPKENLTRILTPYFTTKN 662

Query: 81  SDD 83
             D
Sbjct: 663 RGD 665


>gi|218780092|ref|YP_002431410.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761476|gb|ACL03942.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 4   RKLSEKIINQIAAGEIIERPS---IAIKELIENSLDA----ESSRVETVIAGG-GKSFFQ 55
           + L + + N I A      PS     +  LI N++DA    +   V      G G     
Sbjct: 460 QVLDDNL-NLIQA-----SPSELQQVLLNLINNAIDAIDHKQGGEVTISTENGDGVVNIH 513

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           + D G G+    +        T+K
Sbjct: 514 VADTGQGIPDAVLKRVFDPFFTTK 537


>gi|187925986|ref|YP_001892331.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187727740|gb|ACD28904.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
          Length = 635

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 22  RPSIAIKELIENSLDAESSR-------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQ 73
           R    +  LI N++DA +         V   +    K     + D G G+ ++ +P   +
Sbjct: 521 RLEQVLVNLIRNAIDASAETPQPRSATVHVSVEPVEKWVRITVRDFGPGIPADVLPRLFE 580

Query: 74  RHCTSK 79
              T+K
Sbjct: 581 PFFTTK 586


>gi|38233004|ref|NP_938771.1| putative two component system sensor kinase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199263|emb|CAE48894.1| Putative two component system sensor kinase [Corynebacterium
           diphtheriae]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 21/118 (17%)

Query: 23  PSIAIKELIENSLD--------AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
              A+  LI N+++        + ++++       G+   ++ DNG G++ E      +R
Sbjct: 265 LVTAVSNLISNAINYSPQGMPISVATKIS----RDGRVLIRVIDNGIGISVENQKRVFER 320

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-----HLTLMSRPPQNNTGAQIAISGEK 127
                   D +   + G  G  L  +  V+      +TL SRP   +T         +
Sbjct: 321 F----FRVDKARSRSTGGTGLGLAIVKHVAANHGGDVTLWSRPGTGSTFTIELPIYHE 374


>gi|284010225|dbj|BAI66712.1| DNA gyrase B [Borrelia turcica]
          Length = 625

 Score = 45.0 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   ++DNG G+ ++
Sbjct: 28 VYEVVDNSIDEALAGFCDKIEIVINSD--NSITVSDNGRGIPTD 69


>gi|190710563|gb|ACE95112.1| gyrase subunit B [Bacillus thuringiensis serovar entomocidus]
          Length = 627

 Score = 45.0 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N +D   A     +   I     +  ++TDNG G+ 
Sbjct: 40 EIVDNCIDEALAGYCDEINVSIEED--NSIRVTDNGRGIP 77


>gi|329944241|ref|ZP_08292500.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530971|gb|EGF57827.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 358

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 22  RPSIAIKELIENSL--DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
             +  +  +IENSL   A ++ V    A GG + F  I D G G+  +  P   +RH
Sbjct: 236 SLAQVLATVIENSLRYGAGATSVSVRSASGGHAVFIDIADEGEGVAEDIAPHVFERH 292


>gi|317049581|ref|YP_004117229.1| DNA topoisomerase IV subunit B [Pantoea sp. At-9b]
 gi|316951198|gb|ADU70673.1| DNA topoisomerase IV, B subunit [Pantoea sp. At-9b]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAKRVEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRNGEVYDIAFENGEK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + +     V   N GT V             +F  S +   + ++ +++  A+  P V 
Sbjct: 148 VQDLHVTGTVAKRNTGTSVHFW-------PDESFFDSPRFSVSRLSHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +             E ++ +
Sbjct: 201 IVFKDQVNNTEQRWCYQDGLTDYLCEAVNGL 231


>gi|203366781|gb|ACH98383.1| DNA gyrase B subunit [Geitlerinema sp. PCC 7105]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ +E
Sbjct: 1  VYEVVDNSVDEALAGYCTHIEIDINADG--SVSVTDDGRGIPTE 42


>gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 597

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   D     V+ ++   G      + D+G G+  E++P   +R  
Sbjct: 485 DRIEQVLTNLIDNAIRHTDKN-GMVKIIVERSGDGVTIHVQDSGSGIPEEDLPFVFERFY 543


>gi|163753370|ref|ZP_02160494.1| two-component sensor histidine kinase, phosphate regulation [Kordia
           algicida OT-1]
 gi|161327102|gb|EDP98427.1| two-component sensor histidine kinase, phosphate regulation [Kordia
           algicida OT-1]
          Length = 347

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           ER    +  LI NS+    D  ++ +     I    K   ++TDNG G+ +E I    +R
Sbjct: 237 ERIQQVLTNLIVNSIKYGRDNGTTEISVENLIRN--KVIVRVTDNGEGIETENIARLFER 294

Query: 75  HC 76
             
Sbjct: 295 FY 296


>gi|153814924|ref|ZP_01967592.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC
          27756]
 gi|317500436|ref|ZP_07958660.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089557|ref|ZP_08338456.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145847955|gb|EDK24873.1| hypothetical protein RUMTOR_01139 [Ruminococcus torques ATCC
          27756]
 gi|316898191|gb|EFV20238.1| DNA gyrase, subunit B [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404925|gb|EGG84463.1| hypothetical protein HMPREF1025_02039 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 640

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +  V+   G +   +TDNG G+  +
Sbjct: 43 EIVDNSVDEHLAGFCTEIRVVLEKDGTA--TVTDNGRGIPVD 82


>gi|50086499|ref|YP_048009.1| DNA topoisomerase IV subunit B [Acinetobacter sp. ADP1]
 gi|49532475|emb|CAG70187.1| topoisomerase IV subunit B [Acinetobacter sp. ADP1]
          Length = 626

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  ++++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHANKIRVTVYQDG--SLAVEDNGRGMPVD 76


>gi|325916059|ref|ZP_08178349.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937]
 gi|325537735|gb|EGD09441.1| DNA topoisomerase IV subunit B [Xanthomonas vesicatoria ATCC 35937]
          Length = 629

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDMHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|323141628|ref|ZP_08076510.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Phascolarctobacterium sp. YIT 12067]
 gi|322413893|gb|EFY04730.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
          [Phascolarctobacterium sp. YIT 12067]
          Length = 183

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 32 ENSLDAESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          +NS+ A +  +   ++    G   F + D+G GM SE +        TS
Sbjct: 13 QNSVAAGARHIWLTVSENEQGYFVFSVRDDGKGMDSEMLQRVCDPFVTS 61


>gi|289669614|ref|ZP_06490689.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 562

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|289662651|ref|ZP_06484232.1| DNA topoisomerase IV subunit B [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 629

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVEVTLYKDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|238762440|ref|ZP_04623411.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638]
 gi|238699425|gb|EEP92171.1| DNA topoisomerase 4 subunit B [Yersinia kristensenii ATCC 33638]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELIMCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDQVNNTEQRWCYADGLTDYLMEAVNGL 231


>gi|203366790|gb|ACH98386.1| DNA gyrase B subunit [Geitlerinema sp. Flo1]
          Length = 370

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++NS+D   A   + +E  I   G     +TD+G G+ +E
Sbjct: 1  VDNSIDEALAGYCTHIEIDINADG--SVSVTDDGRGIPTE 38


>gi|160946608|ref|ZP_02093811.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270]
 gi|158446992|gb|EDP23987.1| hypothetical protein PEPMIC_00566 [Parvimonas micra ATCC 33270]
          Length = 638

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +  ++ DNG G+  E
Sbjct: 43 VYEVVDNSIDEALAGVCDTITVTIFED--NSVRVEDNGSGIPVE 84


>gi|152991737|ref|YP_001357458.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1]
 gi|151423598|dbj|BAF71101.1| DNA gyrase subunit B [Sulfurovum sp. NBC37-1]
          Length = 773

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 13/59 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          + E+++NS+D   A     ++  +   G +  +  DNG G+   E       H T KIS
Sbjct: 40 VYEVVDNSIDEAMAGYCDTIKVTLTKAGSAIIE--DNGRGIPVTE-------HPTEKIS 89


>gi|152997556|ref|YP_001342391.1| DNA topoisomerase IV subunit B [Marinomonas sp. MWYL1]
 gi|150838480|gb|ABR72456.1| DNA topoisomerase IV, B subunit [Marinomonas sp. MWYL1]
          Length = 632

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D    + + R+E ++   G     + DNG GM  +
Sbjct: 32 RPNHLAQEVIDNSVDEALASHADRIEVILYKDG--SLSVEDNGRGMPVD 78


>gi|15612569|ref|NP_240872.1| DNA gyrase subunit B [Bacillus halodurans C-125]
 gi|4033396|sp|O50627|GYRB_BACHD RecName: Full=DNA gyrase subunit B
 gi|2760177|dbj|BAA24187.1| B subunit of DNA gyrase [Bacillus sp.]
 gi|5672652|dbj|BAA82690.1| 78%-identity [Bacillus halodurans]
 gi|10172618|dbj|BAB03725.1| DNA gyrase subunit B [Bacillus halodurans C-125]
          Length = 637

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +  VI     +   +TDNG G+ 
Sbjct: 44 EIVDNSIDEAMAGFCDEIGVVIEED--NSITVTDNGRGIP 81


>gi|238789175|ref|ZP_04632963.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641]
 gi|238722707|gb|EEQ14359.1| DNA topoisomerase 4 subunit B [Yersinia frederiksenii ATCC 33641]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELIMCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDQVNNTEQRWCYADGLTDYLMEAVNGL 231


>gi|330811443|ref|YP_004355905.1| two-component sensor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379551|gb|AEA70901.1| putative two-component sensor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 588

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  +          ++D+G G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMADQPIKRLEVRLEADEQLWRLTVSDSGTGIAEEHLAQVFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|330819659|ref|YP_004348521.1| sensor histidine kinase [Burkholderia gladioli BSR3]
 gi|327371654|gb|AEA63009.1| sensor histidine kinase [Burkholderia gladioli BSR3]
          Length = 459

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A +S ++       GG    ++ D G G+ + +     +R  
Sbjct: 352 LVDNAIRYAGAGAS-IDVRTRRDAGGVPVIEVCDTGPGIPAADRARVFERFY 402


>gi|312137523|ref|YP_004004859.1| DNA gyrase subunit b [Rhodococcus equi 103S]
 gi|311886862|emb|CBH46170.1| DNA gyrase subunit B [Rhodococcus equi 103S]
          Length = 678

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +S+VE   +  GG    Q+ D+G G+ 
Sbjct: 48 EVVDNSVDEAMAGYASKVEVTMLEDGG---IQVVDDGRGIP 85


>gi|309388287|gb|ADO76167.1| DNA gyrase subunit B [Halanaerobium praevalens DSM 2228]
          Length = 640

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
             +E     + E+++NS+D   A   S V   I  G     ++ D+G G+  E
Sbjct: 33 STSLEGLHHLVYEVVDNSIDEAMAGYCSEVIVEIKPGNI--IKVQDDGRGIPVE 84


>gi|284054181|ref|ZP_06384391.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570162|dbj|BAI92434.1| histidine kinase [Arthrospira platensis NIES-39]
          Length = 161

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 23/86 (26%)

Query: 13  QI--AAGEIIERPSIAIKELIENSLDAESSR-----------------VETVIAGGGKSF 53
           QI   AG+     +     LI N++DA   R                 +  ++       
Sbjct: 27  QIECCAGQ----LNQVFLNLINNAIDAICDRYKKQTLEQIINEPGMIWISIMLTEQKTVQ 82

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
            +I DNG G++ E I        T+K
Sbjct: 83  IRIADNGIGISPEIISKVFDPFYTTK 108


>gi|282881781|ref|ZP_06290439.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298391|gb|EFA90829.1| DNA gyrase, B subunit [Peptoniphilus lacrimalis 315-B]
          Length = 639

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++ VI   G     + DNG G+  E
Sbjct: 42 VYEVVDNSIDEALAGICDHIKIVITKNG--SCYVEDNGSGIPVE 83


>gi|269314037|gb|ACZ36920.1| DNA gyrase B [Mycobacterium immunogenum]
          Length = 651

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ VE   +A GG    Q+ D+G G+ 
Sbjct: 37 EVVDNSVDEAMAGYATTVEVTMLADGG---IQVKDDGRGIP 74


>gi|269314033|gb|ACZ36918.1| DNA gyrase B [Mycobacterium bolletii]
 gi|269314039|gb|ACZ36921.1| DNA gyrase B [Mycobacterium massiliense]
          Length = 651

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ VE   +A GG    Q+ D+G G+ 
Sbjct: 37 EVVDNSVDEAMAGYATTVEVTMLADGG---IQVKDDGRGIP 74


>gi|269314031|gb|ACZ36917.1| DNA gyrase B [Mycobacterium massiliense]
          Length = 651

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ VE   +A GG    Q+ D+G G+ 
Sbjct: 37 EVVDNSVDEAMAGYATTVEVTMLADGG---IQVKDDGRGIP 74


>gi|227831835|ref|YP_002833542.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
 gi|262183099|ref|ZP_06042520.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
 gi|227452851|gb|ACP31604.1| DNA gyrase subunit B [Corynebacterium aurimucosum ATCC 700975]
          Length = 681

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +V   +   GG    ++ DNG G+  E
Sbjct: 43 EIVDNSVDEAMAGYADKVIVTLREDGG---IEVIDNGRGIPVE 82


>gi|169627114|ref|YP_001700763.1| DNA gyrase subunit B [Mycobacterium abscessus ATCC 19977]
 gi|169239081|emb|CAM60109.1| DNA gyrase (subunit B) GyrB (DNA topoisomerase) [Mycobacterium
          abscessus]
          Length = 675

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ VE   +A GG    Q+ D+G G+ 
Sbjct: 48 EVVDNSVDEAMAGYATTVEVTMLADGG---IQVKDDGRGIP 85


>gi|158954864|gb|ABW84389.1| DNA topoisomerase IV subunit B [Spiroplasma sp. CRAYFISH]
          Length = 559

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  +S +  +I    G     + DNG G+        + +H + K
Sbjct: 21 EIVDNSIDEALAGFASEINIIIHKNNG---ITVKDNGRGVP-------IGKHASGK 66


>gi|158954862|gb|ABW84388.1| DNA topoisomerase IV subunit B [Spiroplasma eriocheiris]
 gi|158954868|gb|ABW84391.1| DNA topoisomerase IV subunit B [Spiroplasma sp. SHRIMP]
          Length = 568

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  +S +  +I    G     + DNG G+        + +H + K
Sbjct: 21 EIVDNSIDEALAGFASEINIIIHKNNG---ITVKDNGRGVP-------IGKHASGK 66


>gi|167646829|ref|YP_001684492.1| DNA topoisomerase IV subunit B [Caulobacter sp. K31]
 gi|167349259|gb|ABZ71994.1| DNA topoisomerase IV, B subunit [Caulobacter sp. K31]
          Length = 707

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+++NS+D   A  +  +E  +   G  +  + D+G GM  +E P 
Sbjct: 103 EVLDNSMDEAVAGFAKTIEVRLDADG--YLSVKDDGRGMPVDEHPK 146


>gi|94983857|gb|ABF50633.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
 gi|158954866|gb|ABW84390.1| DNA topoisomerase IV subunit B [Spiroplasma mirum]
          Length = 554

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A  +S +  +I    G     + DNG G+        + +H + K
Sbjct: 14 EIVDNSIDEALAGFASEINIIIHKNNG---ITVKDNGRGVP-------IGKHASGK 59


>gi|187478868|ref|YP_786892.1| DNA topoisomerase IV subunit B [Bordetella avium 197N]
 gi|115423454|emb|CAJ49988.1| topoisomerase IV subunit B [Bordetella avium 197N]
          Length = 670

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           E P   ++E+I+N+ D   A    +++  +   G     + D+G G+      EE    +
Sbjct: 48  ENPLHIVQEVIDNAADEALAGHGKQIQVTLHADG--SISVEDDGRGIPVGLHPEENAPVV 105

Query: 69  PMAVQR-HC 76
            +   R H 
Sbjct: 106 ELVFTRLHA 114


>gi|325677512|ref|ZP_08157176.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi
          ATCC 33707]
 gi|111185878|dbj|BAF02676.1| DNA gyrase subunit B [Rhodococcus equi]
 gi|325551759|gb|EGD21457.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Rhodococcus equi
          ATCC 33707]
          Length = 678

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +S+VE   +  GG    Q+ D+G G+ 
Sbjct: 48 EVVDNSVDEAMAGYASKVEVTMLEDGG---IQVVDDGRGIP 85


>gi|315606879|ref|ZP_07881888.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
 gi|315251544|gb|EFU31524.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella buccae
           ATCC 33574]
          Length = 679

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 81  LKEVIDNSIDEFKMNAG-DRIEVDIDDN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 137

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
                   + G  G  L ++ A+S      S                K       +   G
Sbjct: 138 DSKAFK-KSVGLNGVGLKAVNALSARFEAKSYRDGTVRELVFERGVLKDDETHETSDESG 196

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYK 195
           T +                K+ +   +++  ++R        ++          +     
Sbjct: 197 TFIFFE-------PDALLFKNYKFHDDIVETMLRNYTYLNTGLTIMYNGRRILSRHGLKD 249

Query: 196 MNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
           +   +   +    I  V GED            +     + G          +A + ++ 
Sbjct: 250 LLTDNMTVDGLYDIVHVKGEDIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIA 309

Query: 254 INGRTVQDKFILSTIRTA 271
              +    K+    IR  
Sbjct: 310 KTIKEFYGKYEYGDIRNG 327


>gi|311105288|ref|YP_003978141.1| C4-dicarboxylate transport sensor protein DctB [Achromobacter
           xylosoxidans A8]
 gi|310759977|gb|ADP15426.1| C4-dicarboxylate transport sensor protein DctB [Achromobacter
           xylosoxidans A8]
          Length = 659

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAGGGKSF-FQITDN 59
            E +  Q+ A  +  R    +  L++N++DA         R+   +   G +    ++DN
Sbjct: 518 PEDLNYQVLANRV--RLEQVLVNLLQNAMDALEGLPDG--RIVVALQDLGATVQIYVSDN 573

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G++            T+K
Sbjct: 574 GPGLSPAARAHLFTPFHTTK 593


>gi|307293189|ref|ZP_07573035.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
 gi|306881255|gb|EFN12471.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
          Length = 441

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+ +A ++ ++ ++     S    + DNG G +   +    + + +SK
Sbjct: 338 LLDNAREAGATYIDLLVGRDSASLNIAVRDNGSGFSEAMLEDFGKPYRSSK 388


>gi|301309776|ref|ZP_07215715.1| putative DNA-binding response regulator/sensor histidine kinase
           [Bacteroides sp. 20_3]
 gi|300831350|gb|EFK61981.1| putative DNA-binding response regulator/sensor histidine kinase
           [Bacteroides sp. 20_3]
          Length = 911

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           ++   +          + DNG G+  E +    +R  TS
Sbjct: 536 KITIRLREEETEVVLSVEDNGEGIPPENLASVFERFFTS 574


>gi|298376456|ref|ZP_06986411.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 3_1_19]
 gi|298266334|gb|EFI07992.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 3_1_19]
          Length = 911

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           ++   +          + DNG G+  E +    +R  TS
Sbjct: 536 KITIRLREEETEVVLSVEDNGEGIPPENLASVFERFFTS 574


>gi|288925439|ref|ZP_06419373.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella
           buccae D17]
 gi|288337910|gb|EFC76262.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella
           buccae D17]
          Length = 627

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 74/258 (28%), Gaps = 24/258 (9%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 29  LKEVIDNSIDEFKMNAG-DRIEVDIDDN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 85

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
                   + G  G  L ++ A+S      S                K       +   G
Sbjct: 86  DSKAFK-KSVGLNGVGLKAVNALSARFEAKSYRDGTVRELVFERGVLKDDETHETSDESG 144

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYK 195
           T +                K+ +   +++  ++R        ++          +     
Sbjct: 145 TFIFFE-------PDALLFKNYKFHDDIVETMLRNYTYLNTGLTIMYNGRRILSRHGLKD 197

Query: 196 MNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
           +   +   +    I  V GED            +     + G          +A + ++ 
Sbjct: 198 LLTDNMTVDGLYDIVHVKGEDIEIAFTHTNQYGEEYHSFVNGQHTTQGGTHQSAFKEHIA 257

Query: 254 INGRTVQDKFILSTIRTA 271
              +    K+    IR  
Sbjct: 258 KTIKEFYGKYEYGDIRNG 275


>gi|150008119|ref|YP_001302862.1| two-component system sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149936543|gb|ABR43240.1| two-component system sensor kinase/response regulator, hybrid
           [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           ++   +          + DNG G+  E +    +R  TS
Sbjct: 536 KITIRLREEETEVVLSVEDNGEGIPPENLASVFERFFTS 574


>gi|83718905|ref|YP_443253.1| DNA mismatch repair protein [Burkholderia thailandensis E264]
 gi|257139489|ref|ZP_05587751.1| putative DNA mismatch repair protein [Burkholderia thailandensis
           E264]
 gi|83652730|gb|ABC36793.1| putative DNA mismatch repair protein [Burkholderia thailandensis
           E264]
          Length = 660

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 29  ELIENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           EL+ N  DA++  VE  +     S     +I D+G G+    +     R   S   +D +
Sbjct: 33  ELVWNGFDAKADLVEVDVRLNSLSALATVRILDDGDGIDPTTLKHTFGRFNDSHKREDAA 92

Query: 86  NIHTFGFRG 94
                G RG
Sbjct: 93  QHGAHG-RG 100


>gi|148264739|ref|YP_001231445.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146398239|gb|ABQ26872.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 438

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 16/84 (19%)

Query: 4   RKLSEKIINQIAAGE--II---ERPSIAIKELIENSLDAESS--RVET-VIAGGGKSFFQ 55
           ++L +        GE  ++   ER    +  +++N++DA ++   +   ++  GG     
Sbjct: 319 KRLPD--------GELTVVADPERVRQVMVNILKNAVDATATGGTIAVGLVKTGGDVSIH 370

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           +TD+G G+  + I        T+K
Sbjct: 371 VTDSGPGIADDAIEKIFDVFYTTK 394


>gi|88808580|ref|ZP_01124090.1| heat shock protein 90 [Synechococcus sp. WH 7805]
 gi|88787568|gb|EAR18725.1| heat shock protein 90 [Synechococcus sp. WH 7805]
          Length = 633

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 33/118 (27%)

Query: 27  IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N +DA S R                ++  I    K+   I+DNG GMT++E+  
Sbjct: 33  LRELVSNGVDAISKRRMASIAGDCSEGDEGVIQIRIDRSNKTL-TISDNGIGMTADEVKR 91

Query: 71  AVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            + +   S       K   D   I      GF      S   V+  + + +R  +  +
Sbjct: 92  YINQVAFSSAEDFLEKYKQDSEAIIGHFGLGF-----YSSFMVAERVEISTRSARPES 144


>gi|328883698|emb|CCA56937.1| DNA gyrase subunit B [Streptomyces venezuelae ATCC 10712]
          Length = 676

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A  +  ++  I   G    ++ DNG G+ 
Sbjct: 55 VQEVVDNSVDEALAGHADTIDVTILADGA--VRVVDNGRGIP 94


>gi|326536845|ref|YP_004300843.1| DNA topoisomerase II large subunit [Aeromonas phage 65]
 gi|312596865|gb|AAR90934.2| DNA topoisomerase II large subunit [Aeromonas phage 65]
          Length = 667

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 20 IERPSIAIKELIENSLD-A------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          I   +  I E+++NS+D A       +++++ V+     +   I+DNG G+   ++
Sbjct: 45 IPGLAKVIDEIVDNSVDEAIRTDFKYANKIDIVVDD-QTNQVTISDNGRGIPQYDV 99


>gi|312884330|ref|ZP_07744039.1| Signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368103|gb|EFP95646.1| Signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 303

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 26  AIKELIEN-SLDA-ESS--------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            I+ELI N +L A +S          ++  +     +   I DNG G++ +++    Q  
Sbjct: 194 VIEELINNCALHAFQSHGNKNNYTITIKVQVIDH-HTEIIIEDNGVGISPDDLNKVFQPF 252

Query: 76  CT 77
            T
Sbjct: 253 YT 254


>gi|269799058|gb|ACZ43807.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 781

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     ++D+G G+  +
Sbjct: 43 EVVDNSIDEALAGHCTDIVVTIHDDG--SVSVSDDGRGIPVD 82


>gi|269799056|gb|ACZ43806.1| DNA gyrase subunit B [Moritella viscosa]
 gi|269799060|gb|ACZ43808.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 805

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     ++D+G G+  +
Sbjct: 43 EVVDNSIDEALAGHCTDIVVTIHDDG--SVSVSDDGRGIPVD 82


>gi|296932705|gb|ADH93506.1| DNA gyrase subunit B [Pseudomonas sp. In5]
          Length = 807

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 24/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 46  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 103

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q  I G     ++ V 
Sbjct: 104 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYIHGVPKEPMKIVG 162

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  ++              K+     +++   IR ++     V       +S + +
Sbjct: 163 ESETTGTQIH-----FKPSDLTFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEE 217

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G     +  +       N V       E  +     +   N         F N
Sbjct: 218 LFKY--EGGLRAFVEYLNTNKTPVNQVFHFNIQREDGIGVEIALQW-NDSFNENLLCFTN 274

Query: 256 GRTVQD 261
               +D
Sbjct: 275 NIPQRD 280


>gi|282163382|ref|YP_003355767.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
 gi|282155696|dbj|BAI60784.1| DNA gyrase subunit B [Methanocella paludicola SANAE]
          Length = 635

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I   G     ++D+G G+  E
Sbjct: 44 VYEVVDNSIDEALAGYCHNIEVTINKDG--SVTVSDDGRGIPVE 85


>gi|262381306|ref|ZP_06074444.1| two-component system sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
 gi|262296483|gb|EEY84413.1| two-component system sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
          Length = 911

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           ++   +          + DNG G+  E +    +R  TS
Sbjct: 536 KITIRLREEETEVVLSVEDNGEGIPPENLASVFERFFTS 574


>gi|260425965|ref|ZP_05779944.1| PAS/PAC sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260420457|gb|EEX13708.1| PAS/PAC sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 738

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 12  NQIAAGEIIER-PS---IAIKELIENSL---DAESSRVETVIAG-GGKSFFQITDNGFGM 63
             I +G  +E  PS     ++ L+ N++   DA   RV   I   GG +  ++ D G G+
Sbjct: 471 RMIDSGLTVESDPSYLRRVVQNLVANAIRYTDAG--RVVVGIRRRGGAARIEVWDTGPGI 528

Query: 64  TSEEIPMAVQ 73
             E+     +
Sbjct: 529 AEEDQSTIFE 538


>gi|260430523|ref|ZP_05784496.1| two-component system, sensor protein [Citreicella sp. SE45]
 gi|260418552|gb|EEX11809.1| two-component system, sensor protein [Citreicella sp. SE45]
          Length = 452

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 8/53 (15%)

Query: 30  LIENSL----DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L    D   +R+     ++  G +   + D+G G+ +++  +A +R  
Sbjct: 358 LVDNALRHGGD-GMTRITVRTALSDAGVA-VTVQDDGIGIPADQSEVAFRRFS 408


>gi|255014965|ref|ZP_05287091.1| two-component system sensor kinase/response regulator, hybrid
           [Bacteroides sp. 2_1_7]
          Length = 911

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           ++   +          + DNG G+  E +    +R  TS
Sbjct: 536 KITIRLREEETEVVLSVEDNGEGIPPENLASVFERFFTS 574


>gi|254976865|ref|ZP_05273337.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255094252|ref|ZP_05323730.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255316005|ref|ZP_05357588.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518662|ref|ZP_05386338.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651784|ref|ZP_05398686.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684810|ref|YP_003216095.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260688468|ref|YP_003219602.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|260210973|emb|CBA66249.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260214485|emb|CBE06967.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 671

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
              G +  +++DNG G+  E IP    R  T
Sbjct: 592 KEDGFAIIKVSDNGKGIPPENIPKVFDRFFT 622


>gi|149912065|ref|ZP_01900656.1| Putative DNA gyrase, subunit B [Moritella sp. PE36]
 gi|149804861|gb|EDM64898.1| Putative DNA gyrase, subunit B [Moritella sp. PE36]
          Length = 805

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     ++D+G G+  +
Sbjct: 43 EVVDNSIDEALAGHCTDIVVTIHDDG--SVSVSDDGRGIPVD 82


>gi|94983853|gb|ABF50631.1| DNA topoisomerase IV subunit B [Spiroplasma turonicum]
          Length = 554

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A + S +   I   G     I DNG G+ 
Sbjct: 14 EIVDNSIDESLAGACSEINVSIEKDG--SVTIKDNGRGVP 51


>gi|332703593|ref|ZP_08423681.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332553742|gb|EGJ50786.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 367

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 30  LIENSLDA-ESSR-------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+EN+LDA  ++        +   I         + D G G+ ++ +P       ++K
Sbjct: 264 LVENALDAMNATATGEGRLDISARILDNSLE-IAVADTGHGIPADILPRIFDPFFSTK 320


>gi|310822652|ref|YP_003955010.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395724|gb|ADO73183.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 827

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 18/68 (26%)

Query: 17  GEIIERPSIAIKELIENSL----DAESSRVETVIA-----GGGKSFFQITDNGFGMTSEE 67
            E+++        LI N++    D+   RV           G      + D+G G+  +E
Sbjct: 442 HEVLQN-------LITNAIHHAKDSG--RVTVRALRLTRPDGDAVKITVQDDGSGIPPDE 492

Query: 68  IPMAVQRH 75
           + +   R+
Sbjct: 493 LHLVFDRY 500


>gi|239502531|ref|ZP_04661841.1| putative DNA mismatch repair protein [Acinetobacter baumannii
          AB900]
          Length = 659

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 1  MK--IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGG---GKSFFQ 55
          M   I+ L+E    +            A+ ELI N  DA S  V   +      G     
Sbjct: 16 MPGHIKTLTEASATK------------ALSELIWNGFDASSQIVTVTLNYNSMEGLDSIV 63

Query: 56 ITDNGFGMTSEEIPMAV 72
          + D G G+  +++ +  
Sbjct: 64 VEDQGSGIPYKDVELFF 80


>gi|115380379|ref|ZP_01467377.1| hypothetical protein STIAU_7484 [Stigmatella aurantiaca DW4/3-1]
 gi|115362614|gb|EAU61851.1| hypothetical protein STIAU_7484 [Stigmatella aurantiaca DW4/3-1]
          Length = 508

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 18/68 (26%)

Query: 17  GEIIERPSIAIKELIENSL----DAESSRVETVIA-----GGGKSFFQITDNGFGMTSEE 67
            E+++        LI N++    D+   RV           G      + D+G G+  +E
Sbjct: 123 HEVLQN-------LITNAIHHAKDSG--RVTVRALRLTRPDGDAVKITVQDDGSGIPPDE 173

Query: 68  IPMAVQRH 75
           + +   R+
Sbjct: 174 LHLVFDRY 181


>gi|160881920|ref|YP_001560888.1| histidine kinase [Clostridium phytofermentans ISDg]
 gi|160430586|gb|ABX44149.1| histidine kinase [Clostridium phytofermentans ISDg]
          Length = 185

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          +NS+ A+++ +   +    K       I DNG GMT E++   +    T
Sbjct: 14 QNSIRADATLIIITVTADRKKDTMTIVIKDNGCGMTKEQVTHVLDPFFT 62


>gi|312136520|ref|YP_004003857.1| DNA topoisomerase vi, b subunit [Methanothermus fervidus DSM 2088]
 gi|311224239|gb|ADP77095.1| DNA topoisomerase VI, B subunit [Methanothermus fervidus DSM 2088]
          Length = 521

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 33/203 (16%)

Query: 20  IERPSIAIKELIENSLDA--ESS---RVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAV 72
           I   ++   ELI NSLDA  E+     +E  +    K ++ +   DNG G+  + +P   
Sbjct: 34  IRSLTMVFHELITNSLDAAEEAGILPNIEIELERIDKDYYVLRHQDNGPGIPEDYVPKVF 93

Query: 73  QR-HCTSKISDDFSNIHT-----FGFRGEALPSIGAVSH-LTLMSRPPQNNT--GAQIAI 123
            +    SK      NI +      G  G  L S       + ++S+  ++    G ++ +
Sbjct: 94  CKMFAGSKFR----NIQSRGQQGLGCSGCVLFSQMTTGKPVRVISKYKEDGEIKGVEMLL 149

Query: 124 SGEKISSVRPV-----AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
             ++  +   +         GT V V      +     + +SEQ     I    RR  I 
Sbjct: 150 QLDEKKNEGVILEKNEVDPDGTGVFVELHLKDV----TYSRSEQGAFEYI----RRTMIG 201

Query: 179 YPKVSFTFSTIKSNRYKMNFQST 201
            P    TF   +   YK    ST
Sbjct: 202 NPHAQITFKDPRGKIYKFKRAST 224


>gi|225850958|ref|YP_002731192.1| histidine kinase [Persephonella marina EX-H1]
 gi|225645436|gb|ACO03622.1| histidine kinase [Persephonella marina EX-H1]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 31  IENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           I+N+++ A+S+ +       G    +I D+G G+  E+     +   T
Sbjct: 292 IKNAIEWAKSTVILKAYEKDGNLIIEIEDDGEGIKEEDREKIFEPFYT 339


>gi|254283642|ref|ZP_04958610.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B]
 gi|219679845|gb|EED36194.1| DNA gyrase, B subunit [gamma proteobacterium NOR51-B]
          Length = 810

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S+++ +I         + D+G G+ +E
Sbjct: 49 ELVDNSIDEALAGHCSQIDVIIHPD--ESVTVADDGRGIPTE 88


>gi|194290022|ref|YP_002005929.1| sensor histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193223857|emb|CAQ69866.1| putative sensor histidine kinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 472

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++      +  V   +A  GG    Q+ DNG G+  +E     +R  
Sbjct: 367 LIDNAIRYAGRGA-VVTVRVAADGGVPRLQVIDNGPGIAPDEREAVFRRFY 416


>gi|29830864|ref|NP_825498.1| DNA gyrase subunit B [Streptomyces avermitilis MA-4680]
 gi|29607977|dbj|BAC72033.1| putative DNA gyrase subunit B [Streptomyces avermitilis MA-4680]
          Length = 692

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 73  VYEVVDNSVDEALAGHADTIDITILADGG---VRVIDNGRGIP 112


>gi|238789490|ref|ZP_04633275.1| Sensor kinase dpiB [Yersinia frederiksenii ATCC 33641]
 gi|238722440|gb|EEQ14095.1| Sensor kinase dpiB [Yersinia frederiksenii ATCC 33641]
          Length = 525

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 11/72 (15%)

Query: 30  LIENSLDA------ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISD 82
           L++N+ +A         +VE  ++  G     ++ D+G G+  +      +R  +SK SD
Sbjct: 426 LLDNAFEASLKNPEGDKQVEIYLSDEGDDLILEVADHGCGIDPQLQDSLFERGISSKNSD 485

Query: 83  D----FSNIHTF 90
           D       + T+
Sbjct: 486 DHGIGLYLVATY 497


>gi|163849056|ref|YP_001637100.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527024|ref|YP_002571495.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670345|gb|ABY36711.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450903|gb|ACM55169.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 502

 Score = 45.0 bits (105), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 18/89 (20%)

Query: 21  ERPSIAIKELIENSLDAESSR-------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAV 72
           +R    +  LI+N+L     R       +       GK     ++DNG G+  E +P   
Sbjct: 391 DRLRQVLLILIDNAL-----RYTPSGGVITIATEPAGKQIRLSVSDNGCGIAPEHLPHLF 445

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           +R        D +   + G  G  L  I 
Sbjct: 446 ERFY----RVDVARNRSDGHAGLGLA-IA 469


>gi|256786618|ref|ZP_05525049.1| DNA gyrase subunit B [Streptomyces lividans TK24]
 gi|289770511|ref|ZP_06529889.1| DNA gyrase, B subunit [Streptomyces lividans TK24]
 gi|289700710|gb|EFD68139.1| DNA gyrase, B subunit [Streptomyces lividans TK24]
          Length = 694

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 75  VQEVVDNSVDEALAGHADTIDVTILPDGG---VRVVDNGRGIP 114


>gi|302543959|ref|ZP_07296301.1| DNA gyrase, B subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461577|gb|EFL24670.1| DNA gyrase, B subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 676

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEAMAGHADTIDVTILPDGG---VRVVDNGRGIP 106


>gi|295837751|ref|ZP_06824684.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
 gi|197699827|gb|EDY46760.1| DNA gyrase subunit B [Streptomyces sp. SPB74]
          Length = 682

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 60 VQEVVDNSVDEALAGHADTIDVTILPDGG---VRVVDNGRGIP 99


>gi|172039685|ref|YP_001799399.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109]
 gi|171850989|emb|CAQ03965.1| DNA gyrase subunit B [Corynebacterium urealyticum DSM 7109]
          Length = 699

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  + +V   +   G    +++D+G G+  E
Sbjct: 65  EVVDNSVDEAMAGYAKKVSVTLKEDG--SVEVSDDGRGIPVE 104


>gi|21222282|ref|NP_628061.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
 gi|544466|sp|P35886|GYRB_STRCO RecName: Full=DNA gyrase subunit B
 gi|8247656|emb|CAB92994.1| DNA gyrase subunit B [Streptomyces coelicolor A3(2)]
          Length = 686

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEALAGHADTIDVTILPDGG---VRVVDNGRGIP 106


>gi|7437457|pir||T10969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain B -
           Streptomyces coelicolor
 gi|436027|gb|AAA65215.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093584|prf||2104262D DNA gyrase
          Length = 686

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I   GG    ++ DNG G+ 
Sbjct: 67  VQEVVDNSVDEALAGHADTIDVTILPDGG---VRVVDNGRGIP 106


>gi|325261171|ref|ZP_08127909.1| sensor histidine kinase [Clostridium sp. D5]
 gi|324032625|gb|EGB93902.1| sensor histidine kinase [Clostridium sp. D5]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 19  IIERPSI---AIKELIENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPM 70
           +I  P      I  ++ NSL   D  + ++   +   G  F Q+   DNG G+ ++++P 
Sbjct: 252 VIVDPEQLRRVINNIVTNSLKYMDKPAGKITMSLKDVG-DFIQVELGDNGKGIAAKDLPY 310

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
              R        D S   + G  G  L SI
Sbjct: 311 IFNRFY----RTDASRNSSKGGSGIGL-SI 335


>gi|317125075|ref|YP_004099187.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043]
 gi|315589163|gb|ADU48460.1| DNA topoisomerase IV subunit B [Intrasporangium calvum DSM 43043]
          Length = 710

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A     ++ ++A  G    ++ DNG G+  +
Sbjct: 51 EIIDNAVDEALAGVCDHIDVILARDG--SIEVRDNGRGIPVD 90


>gi|256840702|ref|ZP_05546210.1| LOW QUALITY PROTEIN: two-component system sensor kinase/response
           regulator [Parabacteroides sp. D13]
 gi|256737974|gb|EEU51300.1| LOW QUALITY PROTEIN: two-component system sensor kinase/response
           regulator [Parabacteroides sp. D13]
          Length = 536

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS 78
           ++   +          + DNG G+  E +    +R  TS
Sbjct: 161 KITIRLREEETEVVLSVEDNGEGIPPENLASVFERFFTS 199


>gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 589

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N+L   SS     +      GG  +  + DNG G+  E++P   +R  
Sbjct: 480 DRIEQVLTNLIDNALRHTSSNGYVKVKEEEAPGGV-YVHVEDNGSGIPDEDLPFVFERFY 538


>gi|228471272|ref|ZP_04056078.1| DNA topoisomerase II domain protein [Porphyromonas uenonis 60-3]
 gi|228306914|gb|EEK16012.1| DNA topoisomerase II domain protein [Porphyromonas uenonis 60-3]
          Length = 673

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 30/227 (13%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--- 78
           IKE+I+NS+D       S  +   I  G  +  QI D G G+    +   V    TS   
Sbjct: 60  IKEVIDNSIDEFVMGVGS-EIRITI-DGETNEVQIRDYGRGIP---LGKLVD--ATSKMN 112

Query: 79  ---KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              KI        + G  G  L ++ A+S   T+ S      +      +      +   
Sbjct: 113 TGAKIDSQAFK-KSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEM----IAHT 167

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
              P    E               ++   +   +  ++R        ++          +
Sbjct: 168 PAEPWEDKEEHGTLVVFTPDAEVFRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKKYVSR 227

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDF--INNAVELNEKSNEITLQG 235
                    +  G+    I ++ G D       +E   +     + G
Sbjct: 228 HGLQDFLSDTITGDPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNG 274


>gi|183980040|ref|YP_001848331.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M]
 gi|183173366|gb|ACC38476.1| DNA gyrase (subunit B) GyrB [Mycobacterium marinum M]
          Length = 692

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E+++NS+D   A  +++V   +   G    ++ DNG G+        V  H T
Sbjct: 63  EVVDNSVDEAMAGYATQVNVRLLDDG--SVEVADNGRGIP-------VAMHAT 106


>gi|167572503|ref|ZP_02365377.1| sensor histidine kinase [Burkholderia oklahomensis C6786]
          Length = 490

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   I   G  +  ++ D+G G+  +E     +R   S
Sbjct: 365 LIDNAIRYAGD-GA-VITVRIVRDGDFARLEVIDDGPGIAPDERDAVFERFYRS 416


>gi|154795729|gb|ABS86852.1| gyrase B [Mycobacterium avium subsp. paratuberculosis]
          Length = 541

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  + RV+  I   G    ++ DNG G+        V  H T
Sbjct: 25 EVVDNSVDEAMAGYADRVDVRILDDG--SVEVADNGRGIP-------VAIHAT 68


>gi|154795733|gb|ABS86854.1| gyrase B [Mycobacterium avium subsp. paratuberculosis]
          Length = 542

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  + RV+  I   G    ++ DNG G+        V  H T
Sbjct: 25 EVVDNSVDEAMAGYADRVDVRILDDG--SVEVADNGRGIP-------VAIHAT 68


>gi|89512210|gb|ABD74001.1| DNA topoisomerase IV subunit beta [Mycobacterium avium subsp.
          paratuberculosis]
          Length = 179

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  + RV+  I   G    ++ DNG G+        V  H T
Sbjct: 48 EVVDNSVDEAMAGYADRVDVRILDDG--SVEVADNGRGIP-------VAIHAT 91


>gi|118615924|ref|YP_904256.1| DNA gyrase subunit B [Mycobacterium ulcerans Agy99]
 gi|118568034|gb|ABL02785.1| DNA gyrase (subunit B) GyrB [Mycobacterium ulcerans Agy99]
          Length = 692

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 13/53 (24%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E+++NS+D   A  +++V   +   G    ++ DNG G+        V  H T
Sbjct: 63  EVVDNSVDEAMAGYATQVNVRLLDDG--SVEVADNGRGIP-------VAMHAT 106


>gi|104780397|ref|YP_606895.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95109384|emb|CAK14084.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 634

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 21  ERPSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
            R    +  LI N+LDA +++      +E  +  G K   ++ DNG G+ +E      + 
Sbjct: 518 TRLEQILVNLIGNALDAMATQPLPQLWLEGEL-QGDKYRLRVRDNGHGIDAEARKHLFEP 576

Query: 75  HCTSK 79
             T+K
Sbjct: 577 FFTTK 581


>gi|119716163|ref|YP_923128.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536824|gb|ABL81441.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 423

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 21/97 (21%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNG 60
           +L   + + IA     ER +  +  L+ N++       S+RV+ ++   G     + D G
Sbjct: 292 RLDADVPDSIAFTGDPERLAQVVDNLVSNAIKYTEPGGSARVQAIVVADGSVRISVQDTG 351

Query: 61  FGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRG-EA 96
            G+   E      R                 FRG EA
Sbjct: 352 IGIDPAERARLFSRF----------------FRGAEA 372


>gi|307178864|gb|EFN67409.1| hypothetical protein EAG_14808 [Camponotus floridanus]
          Length = 636

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 373 ENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH---QNYIISQTTDGLVIV 429
           +N   +     SD    + D D V + +    +L     + +   +          + + 
Sbjct: 421 KNSAISPLSEWSDWNYDTSDKDQVSKRDINFQRLFNCIDRFNFLPRKLHGLLRHRHVKLT 480

Query: 430 DQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAER 489
           +              +  N  ++ S  L  P  +++ E     ++     L + GI    
Sbjct: 481 NVKRFDSPSNTISRHKGQNEGELLSINLRDPLAMEIPEKTRNSLLRRKVLLKKYGINLGS 540

Query: 490 FGPNA-IAIREIPAILSKKN-------IPQLLRDIIDEII--DSSTTYTLQDRIENILAT 539
              N  + IR IP  L   N       I   + D++++I+  +++   TL   I N +A+
Sbjct: 541 LRENTKLLIRTIPQCLVTSNDRCSSEKILSKIYDLLNDILKDNTNRANTLPVTIHNAIAS 600

Query: 540 MACYG 544
            AC+G
Sbjct: 601 EACHG 605


>gi|291546804|emb|CBL19912.1| DNA topoisomerase IV subunit B [Ruminococcus sp. SR1/5]
          Length = 652

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   SR+  V+   G     + DNG G+  +
Sbjct: 54 EIVDNAVDEHLAGYCSRIHVVLEKDG--SCTVEDNGRGIPVD 93


>gi|289422479|ref|ZP_06424322.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157051|gb|EFD05673.1| DNA gyrase, B subunit [Peptostreptococcus anaerobius 653-L]
          Length = 635

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S +   +   G     + DNG G+  E
Sbjct: 40 VYEVVDNSIDEALAGNCSEIYISLNDDG--SVTVRDNGRGIPVE 81


>gi|197103550|ref|YP_002128927.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196476970|gb|ACG76498.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 530

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 42  VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V   +  G G+    ++DNG G+  E +    +R  TS
Sbjct: 439 VTVALGRGHGRVVATVSDNGPGIPPENLETIFERFYTS 476


>gi|159897122|ref|YP_001543369.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890161|gb|ABX03241.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 25  IAIKELIENSLD--AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
            A++ L+EN+    A+   ++  +          I DNG G+  ++     +     ++ 
Sbjct: 292 NAVRHLLENATQYTAQGGVIQVSVYQDDQLVRVSIRDNGVGIPEDDFERIFEPFV--RLD 349

Query: 82  DDFSNIHTFG 91
           D  ++I   G
Sbjct: 350 DTLASIGGAG 359


>gi|88604194|ref|YP_504372.1| histidine kinase [Methanospirillum hungatei JF-1]
 gi|88189656|gb|ABD42653.1| histidine kinase [Methanospirillum hungatei JF-1]
          Length = 350

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 30  LIENSL--DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ENS+      + +    +           DNG G++++E     +R  
Sbjct: 255 LVENSIRHGGGVTEIRISYVDEQSLLRIIYEDNGSGISADEKEKVFKRGY 304


>gi|88812626|ref|ZP_01127873.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Nitrococcus
           mobilis Nb-231]
 gi|88790042|gb|EAR21162.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Nitrococcus
           mobilis Nb-231]
          Length = 869

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 8/56 (14%)

Query: 30  LIENSLDA-------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LI N++ A        +  +        G+    + DNG G+ ++ +        T
Sbjct: 750 LIGNAIKAVQAVAEQRAGEIRIRAEEDNGRIRVSVRDNGTGIPADTLNRVFDPFYT 805


>gi|311894032|dbj|BAJ26440.1| putative two-component system sensor kinase [Kitasatospora setae
           KM-6054]
          Length = 532

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA    + VE  +   G +   ++ D+G G+ ++      +   TSK
Sbjct: 423 LVDNAMDAAPGGT-VEVRLRAVGSTLLVEVADSGPGIPADLRERVFEEGWTSK 474


>gi|304385859|ref|ZP_07368203.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus
          acidilactici DSM 20284]
 gi|304328363|gb|EFL95585.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pediococcus
          acidilactici DSM 20284]
          Length = 648

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  +++++ V+     +   ++DNG G+  +
Sbjct: 51 EIIDNGIDEALAGFANKIDVVVEKD--NSITVSDNGRGIPVD 90


>gi|299145239|ref|ZP_07038307.1| putative two-component system sensor histidine kinase, putative
          heat shock protein [Bacteroides sp. 3_1_23]
 gi|298515730|gb|EFI39611.1| putative two-component system sensor histidine kinase, putative
          heat shock protein [Bacteroides sp. 3_1_23]
          Length = 870

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 26 AIKELIENSLDAESSRVETV---IAGGGKSFF----------QITDNGFGMTSEEIP 69
          AI EL++NS DA++ RV+     +                   I D+G GM  ++I 
Sbjct: 26 AILELVKNSFDADAKRVDISFSNLKENDDKSIDSYSEKTSRLIIKDDGLGMNLDDIK 82


>gi|293394994|ref|ZP_06639282.1| nitrate/nitrite sensor protein NarQ [Serratia odorifera DSM 4582]
 gi|291422522|gb|EFE95763.1| nitrate/nitrite sensor protein NarQ [Serratia odorifera DSM 4582]
          Length = 560

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 2   KIR---KLSEKIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETV--IAGGGKSFFQ 55
           +IR   +LS + +N   A + +      ++E + N++  A++  +     +A  G +   
Sbjct: 453 RIRLHCRLSSQALN---AQQQVHAL-QIVREAVLNAIKHADAQEIVIRCGVADNGDNHIC 508

Query: 56  ITDNGFGMTSEE 67
           I+D+G G+ S +
Sbjct: 509 ISDDGCGIDSLD 520


>gi|270289888|ref|ZP_06196114.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4]
 gi|270281425|gb|EFA27257.1| DNA gyrase, B subunit [Pediococcus acidilactici 7_4]
          Length = 648

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  +++++ V+     +   ++DNG G+  +
Sbjct: 51 EIIDNGIDEALAGFANKIDVVVEKD--NSITVSDNGRGIPVD 90


>gi|240139869|ref|YP_002964346.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1]
 gi|240009843|gb|ACS41069.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens AM1]
          Length = 685

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S +E  +   G     +TDNG G+  +
Sbjct: 80  EVIDNSMDEAVAGHASFIEVELEESG--SLVVTDNGRGIPVD 119


>gi|226349418|ref|YP_002776532.1| putative two-component histidine kinase [Rhodococcus opacus B4]
 gi|226245333|dbj|BAH55680.1| putative two-component histidine kinase [Rhodococcus opacus B4]
          Length = 478

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 24  SIAIKELIENSLDAES----SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           S  ++ L++N+    +    + V   ++    +   +++D+G G+   E     +R 
Sbjct: 356 SRVVRNLVDNA----ARYATTTVRVRVSSDSVTARIEVSDDGPGIPETERDRVFERF 408


>gi|218531372|ref|YP_002422188.1| DNA topoisomerase IV subunit B [Methylobacterium chloromethanicum
           CM4]
 gi|254562291|ref|YP_003069386.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens DM4]
 gi|218523675|gb|ACK84260.1| DNA topoisomerase IV, B subunit [Methylobacterium chloromethanicum
           CM4]
 gi|254269569|emb|CAX25539.1| DNA topoisomerase IV, subunit B [Methylobacterium extorquens DM4]
          Length = 685

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S +E  +   G     +TDNG G+  +
Sbjct: 80  EVIDNSMDEAVAGHASFIEVELEESG--SLVVTDNGRGIPVD 119


>gi|163852535|ref|YP_001640578.1| DNA topoisomerase IV subunit B [Methylobacterium extorquens PA1]
 gi|163664140|gb|ABY31507.1| DNA topoisomerase IV, B subunit [Methylobacterium extorquens PA1]
          Length = 701

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S +E  +   G     +TDNG G+  +
Sbjct: 96  EVIDNSMDEAVAGHASFIEVELEESG--SLVVTDNGRGIPVD 135


>gi|91779050|ref|YP_554258.1| periplasmic sensor signal transduction histidine kinase, tctE
           [Burkholderia xenovorans LB400]
 gi|91691710|gb|ABE34908.1| periplasmic sensor signal transduction histidine kinase, tctE
           [Burkholderia xenovorans LB400]
          Length = 472

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   +   G ++  Q+ DNG G+ + E     +R   S
Sbjct: 372 LIDNAIRYSGD-GA-VITVRVAREGEQALLQVIDNGPGIAASEREAVFERFYRS 423


>gi|29350163|ref|NP_813666.1| putative two-component system sensor histidine kinase
          [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342075|gb|AAO79860.1| putative two-component system sensor histidine kinase, putative
          heat shock protein [Bacteroides thetaiotaomicron
          VPI-5482]
          Length = 870

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 26 AIKELIENSLDAESSRVETV---IAGGGKSFF----------QITDNGFGMTSEEIP 69
          AI EL++NS DA++ RV+     +                   I D+G GM  ++I 
Sbjct: 26 AILELVKNSFDADAKRVDISFSNLKENDDKSIDSYSEKTSRLIIKDDGLGMNLDDIK 82


>gi|18147149|dbj|BAB83055.1| DNA gyrase subunit B [Marinobacterium georgiense]
          Length = 301

 Score = 45.0 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 76/253 (30%), Gaps = 38/253 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           EL++N +D   A   S +  +I         ++DNG G+      EE   A +      H
Sbjct: 13  ELVDNGIDEALAGHCSEIAVIIHPD--ESVTVSDNGRGIPTDIHKEEGVSAAEVIMTVLH 70

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L  R               ++ 
Sbjct: 71  AGGKFDDNTYKV-SGGLHGVGVSVVNALSS-----ELKLTIRRAGQVHEQIYHHGVPEVP 124

Query: 130 SVRPVAMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
                  +  GTIV  +              +   + +++   +R ++     V      
Sbjct: 125 LRVVGETDLTGTIVRFK-------PSEETFTNISFQYDILAKRLRELSFLNSGVRIRLKD 177

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +S R ++      G     +  +       N +      +E    G      +N G   
Sbjct: 178 ERSGREEV--FEYEGGLAAFVEFLNQNKSPINKIFHFNTMHE-NGVGVEVAMQWNDGFQE 234

Query: 249 QFYVFINGRTVQD 261
             + F N    +D
Sbjct: 235 GLHCFANNIPQRD 247


>gi|300724859|ref|YP_003714184.1| DNA topoisomerase IV subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297631401|emb|CBJ92098.1| DNA topoisomerase IV, subunit B [Xenorhabdus nematophila ATCC
           19061]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 68/208 (32%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  +E ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLAQEVIDNSVDEALAGHAKHIEVILHSD--QSLEVIDDGRGMPVDIHPEEKVSAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILTRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRYSQVHQIAFENGEK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                   +            +       ++    +     +T +++  A+  P V   F
Sbjct: 148 VQELDVIGSCGKRNTGTSVHFW----PDESYFDIPRFSVTRLTHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDKLNGTEQKWCYADGLTDYLLEAVNGL 231


>gi|300780472|ref|ZP_07090328.1| sensor histidine kinase [Corynebacterium genitalium ATCC 33030]
 gi|300534582|gb|EFK55641.1| sensor histidine kinase [Corynebacterium genitalium ATCC 33030]
          Length = 479

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  LI N+      DA    V   +     + +  + D+G GM+ E+     +R
Sbjct: 363 DRLHQVVLNLISNAFKHAGDDAN---VTVTVRDYLDRVYVDVADDGIGMSKEDAAHIFER 419

Query: 75  HC---TS 78
                TS
Sbjct: 420 FYRADTS 426


>gi|158521360|ref|YP_001529230.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510186|gb|ABW67153.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 554

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 38  ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  +    +  G      + DNG G+T E++        T+K
Sbjct: 468 GA-EIRVRSLREGNDLVITVADNGCGITPEDMEKIYLPFFTTK 509


>gi|237736253|ref|ZP_04566734.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817]
 gi|229421601|gb|EEO36648.1| DNA gyrase subunit B [Fusobacterium mortiferum ATCC 9817]
          Length = 635

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 84/247 (34%), Gaps = 34/247 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   + +E  I     +  ++ DNG G+  +          EI + V  
Sbjct: 41  EIVDNSVDEALAGYCTHIEVSILPD--NVIEVVDNGRGIPVDIHPKYGKSALEIVLTVL- 97

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAIS--GEKIS 129
           H   K  +D   + + G  G  +  + A+S    + +           Q       E+  
Sbjct: 98  HAGGKFENDNYKV-SGGLHGVGVSVVNALSLWTEVEV---RKNGKVWYQKYNRGIPEEAV 153

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
               +    GT V  +       A     ++   + N + + ++ +A     +  T +  
Sbjct: 154 KEIGITEEHGTTVRFK-------ADHEIFETLVYDYNTLKNRLKELAYLNKGLVITLTDS 206

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           +   +K       G   + + ++  ED      E    + E+   G      +    +  
Sbjct: 207 RKEPFKKEIFEFEGGIADFLREIT-EDTEKLIKEPIYMTGEVDNIGVEIAFLYTVNQSEI 265

Query: 250 FYVFING 256
            Y F+N 
Sbjct: 266 IYSFVNN 272


>gi|225165618|ref|ZP_03727428.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224800132|gb|EEG18551.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 895

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           ER     + E+++NS+D   A   SR+E  I   G     I DNG G+  +
Sbjct: 68  ERALHHCVSEVLDNSVDEHLAGHCSRIEVNIHVDG--SISIRDNGRGIPVD 116


>gi|170016363|ref|YP_001727282.1| DNA gyrase, B subunit [Leuconostoc citreum KM20]
 gi|169803220|gb|ACA81838.1| DNA gyrase, B subunit [Leuconostoc citreum KM20]
          Length = 669

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N +D   A  +S +   I     +   +TD+G G+  +
Sbjct: 71  EIVDNGIDEALAGFASHITVTIEAD--NSITVTDDGRGIPVD 110


>gi|209549805|ref|YP_002281722.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535561|gb|ACI55496.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 447

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 26  AIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ N++D    S  +   ++  G     + D G G+ +E   +  +   
Sbjct: 353 AVSNLVRNAIDHGGGSGMIPVSVSAFGGGRISVADEGPGIPAEHRELVFEPFY 405


>gi|2961387|emb|CAA18134.1| putative protein [Arabidopsis thaliana]
 gi|7270581|emb|CAB80299.1| putative protein [Arabidopsis thaliana]
          Length = 517

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 19  IIERPSIAIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMA 71
           ++   + AI EL++N++D     ++ V+      +     +     D+G GM    +   
Sbjct: 65  VVTPTAPAIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALVF-QDDGGGMDPAGLRKC 123

Query: 72  VQRHCTSK 79
           +    +SK
Sbjct: 124 MSLGYSSK 131


>gi|255320043|ref|ZP_05361239.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
          SK82]
 gi|262380549|ref|ZP_06073703.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
          SH164]
 gi|255302911|gb|EET82132.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
          SK82]
 gi|262297995|gb|EEY85910.1| DNA topoisomerase IV, B subunit [Acinetobacter radioresistens
          SH164]
          Length = 626

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  ++++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHANQIAVKVYKDG--SLSVEDNGRGMPVD 76


>gi|86360840|ref|YP_472727.1| hypothetical protein RHE_PF00107 [Rhizobium etli CFN 42]
 gi|86284942|gb|ABC94000.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 578

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 23/105 (21%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMA--------- 71
            P  A+ +LI+NSL A + +V   +    G    +I D+G GM  + +  A         
Sbjct: 105 SPETALADLIDNSLAAGARQVRIHLDWRDGNPLVEILDDGTGMNFDRLVEAMRFGGAGPS 164

Query: 72  VQRHCTSKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQ 114
            +R                G  G  L   S+     LT+ SR   
Sbjct: 165 AER-----------QGGDLGRFGLGLKTASLSQCRELTVASRREG 198


>gi|85857848|ref|YP_460050.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB]
 gi|85720939|gb|ABC75882.1| DNA gyrase subunit B [Syntrophus aciditrophicus SB]
          Length = 800

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 21/97 (21%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP------- 69
           E     + E+++NS+D   A    ++   I     +   + DNG G+  +          
Sbjct: 33  EGLHHLVYEVVDNSIDEASAGYCDKITVKIRVD--NSIMVEDNGRGIPVDMHETGVSAAE 90

Query: 70  -MAVQRHCTSKISDDFSNIHTFGFRG------EALPS 99
            +  + H   K S+D   I + G  G       AL S
Sbjct: 91  VVMTKLHAGGKFSNDSYKI-SGGLHGVGVSVVNALSS 126


>gi|83952335|ref|ZP_00961066.1| putative two-component sensor histidine kinase protein [Roseovarius
           nubinhibens ISM]
 gi|83836008|gb|EAP75306.1| putative two-component sensor histidine kinase protein [Roseovarius
           nubinhibens ISM]
          Length = 623

 Score = 45.0 bits (105), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 17  GEIIERPSIAIKELIENSLDAE----SSRVETVIA--GGGKSFFQITDNGFGMTSEEIPM 70
           G++  R    +  L+ N+LDA     +  +   +A    G+   ++ D+G G+T + +  
Sbjct: 502 GQV--RLQQVLVNLLANALDAMETQPAPEIGIRVAGLDSGRWIVEVRDHGEGLTDDTMAQ 559

Query: 71  AVQRHCTSK 79
                 T+K
Sbjct: 560 LFDPFFTTK 568


>gi|256829199|ref|YP_003157927.1| CheA signal transduction histidine kinase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578375|gb|ACU89511.1| CheA signal transduction histidine kinase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 686

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLDAE--------SS------RVETVIA-GGGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D          +       R+E      GG+   +I D+G G
Sbjct: 414 TVIERLNDPLVHLLRNSIDHGIESPEERLAKGKNPEGRIELSAEHSGGEVLIRIIDDGAG 473

Query: 63  MTSE 66
           +  E
Sbjct: 474 IDPE 477


>gi|152971961|ref|YP_001337070.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896538|ref|YP_002921278.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae NTUH-K2044]
 gi|262042299|ref|ZP_06015464.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330008928|ref|ZP_08306334.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3]
 gi|150956810|gb|ABR78840.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548860|dbj|BAH65211.1| DNA topoisomerase IV subunit B [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040363|gb|EEW41469.1| DNA topoisomerase IV [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328535028|gb|EGF61552.1| DNA topoisomerase IV, B subunit [Klebsiella sp. MS 92-3]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAKRVEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYSIAFENGEK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +       +F  S +   + +T +++  A+  P V   F
Sbjct: 148 VEDLHVTGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLTHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 204 RDQVNNSEQSWCYADGLNDYLSEAVNGL 231


>gi|95929116|ref|ZP_01311861.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135017|gb|EAT16671.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 595

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 30  LIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   S+     I      G++  ++ D G G+ +E +P   +R  
Sbjct: 495 LLENAIKYSSTDSTVTIRCYEEDGRAIVRVCDEGCGIEAEHLPRLFERFY 544


>gi|110633369|ref|YP_673577.1| DNA topoisomerase IV subunit B [Mesorhizobium sp. BNC1]
 gi|110284353|gb|ABG62412.1| DNA topoisomerase IV subunit B [Chelativorans sp. BNC1]
          Length = 683

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  ++  G  F  +TDNG G+  +
Sbjct: 81  EVIDNSMDEAVAGHATFIDVELSEDG--FLTVTDNGRGIPVD 120


>gi|333027583|ref|ZP_08455647.1| putative peptidase C14 caspase catalytic subunit p20 [Streptomyces
           sp. Tu6071]
 gi|332747435|gb|EGJ77876.1| putative peptidase C14 caspase catalytic subunit p20 [Streptomyces
           sp. Tu6071]
          Length = 1184

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 23/73 (31%)

Query: 26  AIKELIENSLDA--------------ES------SRVET--VIAGGGKSFFQITDNGFGM 63
           A++EL +N+LDA               +       R+     +   G+ + +  DNG GM
Sbjct: 337 AVRELYQNALDACRYRRARSQYLDRTGALPNAYEGRIRFTQDVDEDGRRYVECEDNGVGM 396

Query: 64  TSEEIPMAVQRHC 76
              E+      H 
Sbjct: 397 GEAELRGVFS-HA 408


>gi|307544310|ref|YP_003896789.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581]
 gi|307216334|emb|CBV41604.1| DNA topoisomerase IV subunit B [Halomonas elongata DSM 2581]
          Length = 626

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)

Query: 22 RPSIAIKELIENSLD-A---ESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          RP+  I+E+I+NS+D A    +  +   +   GG    +++D+G GM  +
Sbjct: 30 RPNHLIQEVIDNSVDEALGGHAKAIAVRLFEDGG---VEVSDDGRGMPID 76


>gi|296446460|ref|ZP_06888404.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296256095|gb|EFH03178.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 352

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 15  AAGEII-----ERPSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEI 68
           A G ++     +  +   + LIEN++   +  VE  +A  G S    + D+G G++ E +
Sbjct: 227 ATGPVVVPGDRDELARVAENLIENAIKYGAGPVEISLAPLGASAVFSVRDHGPGISPEHL 286

Query: 69  PMAVQRHC 76
           P   +R  
Sbjct: 287 PRLTERFY 294


>gi|288958482|ref|YP_003448823.1| topoisomerase IV subunit B [Azospirillum sp. B510]
 gi|288910790|dbj|BAI72279.1| topoisomerase IV subunit B [Azospirillum sp. B510]
          Length = 662

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++N++D   A  +SR++  +A  G     + DNG G+  ++ P 
Sbjct: 49 VAEVLDNAMDEAVAGHASRIDLELAADGT--VMVRDNGRGIPIDDHPK 94


>gi|255283685|ref|ZP_05348240.1| phosphate regulon sensor protein [Bryantella formatexigens DSM
           14469]
 gi|255265750|gb|EET58955.1| phosphate regulon sensor protein [Bryantella formatexigens DSM
           14469]
          Length = 476

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 30  LIENSL----DAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHC-TSK 79
           L+ N++    D     +  VI      G     + DNG G+  E++    +R   T K
Sbjct: 374 LVSNAIKYSNDGG--MIHVVIEDTKNSGI--IHVEDNGIGIPQEDLGRIFERFYRTDK 427


>gi|161520887|ref|YP_001584314.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|189352930|ref|YP_001948557.1| OmpR family two-component system sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160344937|gb|ABX18022.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|189336952|dbj|BAG46021.1| OmpR family two-component system sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 476

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   +   G  +   + DNG G+  +E     +R  
Sbjct: 370 LIDNAIRYAGDRAVITVRVSREGECARLDVIDNGPGIPEDEREAVFERFH 419


>gi|111020663|ref|YP_703635.1| DNA gyrase subunit B [Rhodococcus jostii RHA1]
 gi|110820193|gb|ABG95477.1| DNA topoisomerase subunit B [Rhodococcus jostii RHA1]
          Length = 696

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           E+++NS+D   A  +++VE  +   GG    ++ D+G G+ 
Sbjct: 67  EVVDNSVDEAMAGHATKVEITLLEDGG---VRVVDDGRGIP 104


>gi|301308092|ref|ZP_07214046.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300833562|gb|EFK64178.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 335

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A     S ++    +   G     + DNG G+  E I        T+K
Sbjct: 235 LLKNAIEACEESLSPQIVVEAVQKAGMVIISVIDNGSGIVPEAIDKVFVPFFTTK 289


>gi|255527581|ref|ZP_05394445.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|296186779|ref|ZP_06855180.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|255508714|gb|EET85090.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
 gi|296048493|gb|EFG87926.1| DNA gyrase, B subunit [Clostridium carboxidivorans P7]
          Length = 637

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +E  I     +   +TD+G GM 
Sbjct: 43 VYEIVDNSIDEALAGFCKNIEVFIHKD--NSITVTDDGRGMP 82


>gi|322419734|ref|YP_004198957.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320126121|gb|ADW13681.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 555

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 22/89 (24%)

Query: 4   RKLSEKIIN--QIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIA---GGGKS 52
           R+L     N  QI   +++         LI N+ DA      +   +E   +    GG+ 
Sbjct: 428 RELPRISANGPQI--QQVLTNF------LI-NARDALTEMDGKEKVIEVSTSMRSEGGRR 478

Query: 53  F--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           +    +TDNG G+  E +        TSK
Sbjct: 479 WAVLSVTDNGIGIAPENVSKIFTPFYTSK 507


>gi|210624032|ref|ZP_03294149.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM
          13275]
 gi|210153239|gb|EEA84245.1| hypothetical protein CLOHIR_02101 [Clostridium hiranonis DSM
          13275]
          Length = 633

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S++   I   G     + D+G G+  E
Sbjct: 39 VYEVVDNSIDEALAGNCSKIYVAINADG--SITVEDDGRGIPVE 80


>gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 562

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   +  S+      +  G  + +I+DNG G+  E++P   +R  
Sbjct: 465 LVENAIKYSENGSNVKVISYSKQGNYYLEISDNGLGIPKEDLPRIFERFY 514


>gi|325924529|ref|ZP_08186048.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865]
 gi|325545024|gb|EGD16359.1| DNA topoisomerase IV subunit B [Xanthomonas gardneri ATCC 19865]
          Length = 629

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + +VE  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNSVDEALAGHAKQVEVTLFKDG--SCEVSDDGRGMPVDMHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K ++
Sbjct: 89  LILTRLHAGGKFNN 102


>gi|308234846|ref|ZP_07665583.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
          vaginalis ATCC 14018]
          Length = 146

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 46 EIIDNAVDEALAGACDHIIVTLHDDG--SIEVADNGRGIPVD 85


>gi|300727525|ref|ZP_07060916.1| DNA topoisomerase II (N- region) domain protein [Prevotella
           bryantii B14]
 gi|299775228|gb|EFI71829.1| DNA topoisomerase II (N- region) domain protein [Prevotella
           bryantii B14]
          Length = 654

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 35/283 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A S R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 55  LKEVIDNSIDEFKMKAGS-RIEVDIEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 111

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H T+ S         +     +        
Sbjct: 112 DSKAFK-KSVGLNGVGVKAVNALSS-----HFTVRSYREGKVREIEFEKGNKISDHTNKS 165

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF----STIK 190
               GT +                K+     +++  ++R        ++  +       +
Sbjct: 166 NDENGTFIYFE-------PDNTLFKNYSFHDDIVETMLRNYTYLNSGLTIMYNGCRIHSR 218

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
           +    +   +   +    I  +  +D            +     + G          +A 
Sbjct: 219 NGLEDLLTDNMTVDGLYPIIHMKDDDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAF 278

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEI 290
           + ++    +   +K+  + IR      I +    PV     +I
Sbjct: 279 KEHIAKTIKEYFNKYEYTDIRNGLVAAIAINVEEPVFESQTKI 321


>gi|311114491|ref|YP_003985712.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
          vaginalis ATCC 14019]
 gi|310945985|gb|ADP38689.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Gardnerella
          vaginalis ATCC 14019]
          Length = 786

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 46 EIIDNAVDEALAGACDHIIVTLHDDG--SIEVADNGRGIPVD 85


>gi|298253933|ref|ZP_06977520.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Gardnerella vaginalis 5-1]
 gi|297532076|gb|EFH71051.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Gardnerella vaginalis 5-1]
          Length = 796

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 44 EIIDNAVDEALAGACDHIIVTLHDDG--SIEVADNGRGIPVD 83


>gi|297243590|ref|ZP_06927521.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Gardnerella vaginalis AMD]
 gi|296888341|gb|EFH27082.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Gardnerella vaginalis AMD]
          Length = 793

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 44 EIIDNAVDEALAGACDHIIVTLHDDG--SIEVADNGRGIPVD 83


>gi|283783166|ref|YP_003373920.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
          vaginalis 409-05]
 gi|283441259|gb|ADB13725.1| DNA gyrase, B subunit, C-terminal domain protein [Gardnerella
          vaginalis 409-05]
          Length = 792

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 44 EIIDNAVDEALAGACDHIIVTLHDDG--SIEVADNGRGIPVD 83


>gi|206560857|ref|YP_002231622.1| hypothetical protein BCAL2499 [Burkholderia cenocepacia J2315]
 gi|198036899|emb|CAR52803.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 407

 Score = 45.0 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 13 QIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          +IA       P +A+ EL+ N+ DA +S V+  I    +    + D+G GM++ +  
Sbjct: 27 RIA-----HDPEVALTELVANAWDAGASLVDLTIPPTHQLALTVVDDGHGMSAAQFK 78


>gi|303231678|ref|ZP_07318401.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513627|gb|EFL55646.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 467

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMT 64
           +   +I  I   E+      A+  LI+N++    S +             ++TDNG G+ 
Sbjct: 344 IDSDLI--ITGHEV--SLRRAVTNLIDNAIKFTKSTINITAKRNNLYLIIEVTDNGIGIE 399

Query: 65  SEEIPMAVQR 74
           ++ +     R
Sbjct: 400 ADNLSQIFNR 409


>gi|239980782|ref|ZP_04703306.1| DNA gyrase subunit B [Streptomyces albus J1074]
 gi|291452640|ref|ZP_06592030.1| DNA topoisomerase subunit B [Streptomyces albus J1074]
 gi|291355589|gb|EFE82491.1| DNA topoisomerase subunit B [Streptomyces albus J1074]
          Length = 701

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           ++E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 80  VQEVVDNSVDEALAGHADFIDVTILADGG---VRVIDNGRGIP 119


>gi|16080091|ref|NP_390917.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310978|ref|ZP_03592825.1| hypothetical protein Bsubs1_16546 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315305|ref|ZP_03597110.1| hypothetical protein BsubsN3_16452 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320222|ref|ZP_03601516.1| hypothetical protein BsubsJ_16373 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324504|ref|ZP_03605798.1| hypothetical protein BsubsS_16522 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|41688441|sp|O35044|BCES_BACSU RecName: Full=Sensor protein BceS
 gi|2293176|gb|AAC00254.1| signal transduction protein kinase [Bacillus subtilis]
 gi|2635523|emb|CAB15017.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope [YtsA] [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 334

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           Q+ A E++      +  I++L+ N++  +E+S +E      G ++  Q+ D G G+  ++
Sbjct: 208 QLEAKEVLSDAKWLAFIIRQLLTNAVKYSEASEIEIKSFQKGEQTQLQVKDCGRGIDPKD 267

Query: 68  IPMAVQRHCTS 78
           +P    +  TS
Sbjct: 268 VPRIFDKGFTS 278


>gi|89092267|ref|ZP_01165221.1| DNA gyrase subunit B [Oceanospirillum sp. MED92]
 gi|89083355|gb|EAR62573.1| DNA gyrase subunit B [Oceanospirillum sp. MED92]
          Length = 808

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 76/247 (30%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ +I         + DNG G+      EE   A +      H
Sbjct: 46  EVVDNSIDEALAGHCSEIKVIIHPD--ESITVMDNGRGIPTDIHPEEGVSAAEVIMTVLH 103

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L +  R        +      +  +   V
Sbjct: 104 AGGKFDDNSYKV-SGGLHGVGVSVVNALSVKLKMTIRRNGQV--HEQVYRHGEPEAPLSV 160

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T   +   +           +   + +++   +R ++     V       ++   
Sbjct: 161 VGETETSGTMVRFW----PSEETFSNVSFKFDILAKRLRELSFLNSGVRIVLKDERTAVE 216

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           ++      G     +  +       N +      +E +         +N       + F 
Sbjct: 217 EV--FEYEGGLGAFVEYLNTNKTTVNKLFHFTAEHEASGVAVEVAMQWNDSFQESIHSFT 274

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 275 NNIPQRD 281


>gi|284010229|dbj|BAI66714.1| DNA gyrase B [Borrelia sp. Tortoise14H1]
          Length = 625

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   ++DNG G+ ++
Sbjct: 28 VYEVVDNSIDEALAGFCDKIEVVINSD--NSITVSDNGRGIPTD 69


>gi|289596495|ref|YP_003483191.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|289534282|gb|ADD08629.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 644

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   SR+  +I   G     + D+G G+  +
Sbjct: 40 EVVDNSIDEALAGYCSRINVIIHKDG--SVSVEDDGRGIPVD 79


>gi|269958766|ref|YP_003328553.1| DNA gyrase subunit B [Anaplasma centrale str. Israel]
 gi|269848595|gb|ACZ49239.1| DNA gyrase subunit B [Anaplasma centrale str. Israel]
          Length = 793

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A   ++++ VIAG G     ITDNG G+  +
Sbjct: 41 EVIDNAIDEALAGFCNKIDIVIAGDG--SIAITDNGRGIPID 80


>gi|255003158|ref|ZP_05278122.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Puerto
          Rico]
 gi|255004287|ref|ZP_05279088.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Virginia]
          Length = 793

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A   ++++ VIAG G     ITDNG G+  +
Sbjct: 41 EVIDNAIDEALAGFCNKIDIVIAGDG--SIAITDNGRGIPID 80


>gi|254820903|ref|ZP_05225904.1| DNA gyrase subunit B [Mycobacterium intracellulare ATCC 13950]
          Length = 677

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 13/53 (24%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  +++V+  I   G    ++ DNG G+        V  H T
Sbjct: 48 EVVDNSVDEAMAGYANKVDVRILDDG--SVEVADNGRGIP-------VAMHAT 91


>gi|222475176|ref|YP_002563592.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida]
 gi|222419313|gb|ACM49336.1| DNA gyrase subunit B (gyrB2) [Anaplasma marginale str. Florida]
          Length = 793

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A   ++++ VIAG G     ITDNG G+  +
Sbjct: 41 EVIDNAIDEALAGFCNKIDIVIAGDG--SIAITDNGRGIPID 80


>gi|254166743|ref|ZP_04873597.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|197624353|gb|EDY36914.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 648

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   SR+  +I   G     + D+G G+  +
Sbjct: 44 EVVDNSIDEALAGYCSRINVIIHKDG--SVSVEDDGRGIPVD 83


>gi|254420686|ref|ZP_05034410.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196186863|gb|EDX81839.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 476

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E++   S     L+EN+ D  +S V    +   G     I D+G G  S+ +P   + + 
Sbjct: 327 EVVHGLST----LVENAADFAASTVRVQALVDAGWIEIAILDDGPGFASDILPRLGEPYV 382

Query: 77  TS 78
           TS
Sbjct: 383 TS 384


>gi|149190498|ref|ZP_01868768.1| hypothetical protein VSAK1_13621 [Vibrio shilonii AK1]
 gi|148835622|gb|EDL52589.1| hypothetical protein VSAK1_13621 [Vibrio shilonii AK1]
          Length = 676

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV---------- 72
           P+  + E+I N+ DA+++ V   +    K    ITD+G GM+ ++I              
Sbjct: 44  PA-VLTEIISNAWDADANEVAINLDK-EKGEVLITDDGHGMSEDDIKHRFLNVGYARRDD 101

Query: 73  QRHCTSKISDDFSNIHTFGFRGE---ALPSIGAVSHLTLMSRPPQNN 116
           +R   SK   D       G +G    A+ S+     + + S+     
Sbjct: 102 KR---SK--SDSGKRQVMGRKGIGKLAMFSLA--GKIQVTSKKFDTE 141


>gi|56696767|ref|YP_167128.1| C4-dicarboxylate transport sensor protein DctB, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678504|gb|AAV95170.1| C4-dicarboxylate transport sensor protein DctB, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 589

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      VE ++A G  +   + DNG G+         +   T+K
Sbjct: 487 LLRNALDA--TKSVRDPEVEIILAAGETATLTVRDNGHGIR--NFENIFEPFYTTK 538


>gi|56416812|ref|YP_153886.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries]
 gi|254995014|ref|ZP_05277204.1| DNA gyrase subunit B [Anaplasma marginale str. Mississippi]
 gi|56388044|gb|AAV86631.1| DNA gyrase subunit B [Anaplasma marginale str. St. Maries]
          Length = 793

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A   ++++ VIAG G     ITDNG G+  +
Sbjct: 41 EVIDNAIDEALAGFCNKIDIVIAGDG--SIAITDNGRGIPID 80


>gi|295115103|emb|CBL35950.1| DNA topoisomerase IV subunit B [butyrate-producing bacterium
          SM4/1]
          Length = 639

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   +   G     + DNG G+  E
Sbjct: 42 EIVDNSVDEHLAGECTSIWVTLEADG--SCTVRDNGRGIPVE 81


>gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
 gi|238874109|gb|ACR73816.1| DNA gyrase, B subunit [Eubacterium rectale ATCC 33656]
 gi|291526542|emb|CBK92129.1| DNA gyrase subunit B [Eubacterium rectale DSM 17629]
 gi|291529185|emb|CBK94771.1| DNA gyrase subunit B [Eubacterium rectale M104/1]
          Length = 645

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +E  I     +   + D+G G+ 
Sbjct: 46 VYEIVDNAVDEALAGYCKNIEVTIEED--NSITVQDDGRGIP 85


>gi|283797751|ref|ZP_06346904.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
 gi|291074426|gb|EFE11790.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
          Length = 639

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   +   G     + DNG G+  E
Sbjct: 42 EIVDNSVDEHLAGECTSIWVTLEADG--SCTVRDNGRGIPVE 81


>gi|254168966|ref|ZP_04875805.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
 gi|197622072|gb|EDY34648.1| DNA gyrase, B subunit [Aciduliprofundum boonei T469]
          Length = 648

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   SR+  +I   G     + D+G G+  +
Sbjct: 44 EVVDNSIDEALAGYCSRINVIIHKDG--SVSVEDDGRGIPVD 83


>gi|182416761|ref|ZP_02948158.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
 gi|237669641|ref|ZP_04529619.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182379418|gb|EDT76913.1| DNA gyrase, B subunit [Clostridium butyricum 5521]
 gi|237654875|gb|EEP52437.1| DNA gyrase, B subunit [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 637

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    ++E  I     +   + D+G GM 
Sbjct: 42 VYEIVDNSIDEALAGYCKKIEVNINKD--NSITVIDDGRGMP 81


>gi|78222506|ref|YP_384253.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193761|gb|ABB31528.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 341

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 14  IAAGEIIERPSIAIKELIENSL--DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPM 70
           I+A   +E     ++ L EN++     +  +   +   G +      DNG G+  +++  
Sbjct: 219 ISAAIDVEGMETVLRNLFENAILYSIGAPEIRVTLKRDGNRCTLSFQDNGKGIDRKDLKN 278

Query: 71  AVQRHCTSKISDDFSNIHTFG 91
             ++    +I      I   G
Sbjct: 279 VFRKFY--RIRSSGEAIRGTG 297


>gi|154246920|ref|YP_001417878.1| putative ATPase [Xanthobacter autotrophicus Py2]
 gi|154161005|gb|ABS68221.1| putative ATPase [Xanthobacter autotrophicus Py2]
          Length = 1406

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 21/152 (13%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++ P   + EL++N+ DA +S     I       F    NG     E+    ++ H  S 
Sbjct: 49  VQSPRHILSELLQNADDAGASEARVSIEN---DRFVFEHNG-----EDF---IEAHFASI 97

Query: 80  IS---DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM 136
                 +   +HT GFRG     IG  S  +L  R         +A    + +    V  
Sbjct: 98  CRFGYSNKRALHTIGFRG-----IGFKSTFSLGDRVELFTPTLAVAFERTRFTQPHWVDS 152

Query: 137 NPGT--IVEVRDLFFTIPARLNFLKSEQVETN 166
              T     V              K+      
Sbjct: 153 RRLTSGTTRVEVAIANPLLCREVEKNLDEWLK 184


>gi|86141195|ref|ZP_01059741.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217]
 gi|85831754|gb|EAQ50209.1| DNA gyrase subunit B [Leeuwenhoekiella blandensis MED217]
          Length = 646

 Score = 45.0 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++ +I     +   + DNG G+  +
Sbjct: 44 VYEVVDNSIDEAMAGHCDSIKVIINEN--NSISVKDNGRGIPVD 85


>gi|323137127|ref|ZP_08072206.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242]
 gi|322397485|gb|EFY00008.1| DNA topoisomerase IV, B subunit [Methylocystis sp. ATCC 49242]
          Length = 671

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           E+++N++D   A  ++ +E  +  GG  +  +TDNG G+ 
Sbjct: 65  EVLDNAMDEAVAGHATFIEVTLEPGG--WLTVTDNGRGIP 102


>gi|284161217|ref|YP_003399840.1| DNA gyrase subunit beta [Archaeoglobus profundus DSM 5631]
 gi|284011214|gb|ADB57167.1| DNA gyrase, B subunit [Archaeoglobus profundus DSM 5631]
          Length = 632

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          E+++NS+D   A   +R+   +   G +   + DNG G+  EE P+
Sbjct: 49 EIVDNSIDEALAGYCNRIVVTLHKDGSAS--VEDNGRGIPVEEHPI 92


>gi|260427785|ref|ZP_05781764.1| hypothetical protein CSE45_2882 [Citreicella sp. SE45]
 gi|260422277|gb|EEX15528.1| hypothetical protein CSE45_2882 [Citreicella sp. SE45]
          Length = 568

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKS---FFQ--ITDNGFGMTS 65
            A+ E ++NS+ A ++ V       G+         + DNG GM  
Sbjct: 64  SALCEHVDNSIQAGATEVRVYFHQTGQRGAYSIDGLVLDNGRGMEP 109


>gi|255012666|ref|ZP_05284792.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|298374420|ref|ZP_06984378.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298268788|gb|EFI10443.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 335

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A     S ++    +   G     + DNG G+  E I        T+K
Sbjct: 235 LLKNAIEACEESLSPQIVVEAVQKAGMVIISVIDNGSGIVPEAIDKVFVPFFTTK 289


>gi|225569033|ref|ZP_03778058.1| hypothetical protein CLOHYLEM_05112 [Clostridium hylemonae DSM
          15053]
 gi|225161832|gb|EEG74451.1| hypothetical protein CLOHYLEM_05112 [Clostridium hylemonae DSM
          15053]
          Length = 185

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 15/55 (27%)

Query: 32 ENSLDAESSRVETVIAGGGKSFFQ---------ITDNGFGMTSEEIPMAVQRHCT 77
          ENS+ A +  +   +                  I DNG GM  E++        T
Sbjct: 14 ENSIRAGADYITVEV------LISTQADTLTAVIDDNGCGMDEEQVKRVTDPFYT 62


>gi|77917874|ref|YP_355689.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543957|gb|ABA87519.1| GAF sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 556

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 30  LIENSLDA-----ESSRVETV--IAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+ DA         +E        G        + DNG G+ ++ +        TSK
Sbjct: 445 LLINARDALGGVDREKTIEVRSYAEDNGDGQWIIISVKDNGIGIPAKNLQRVFTPFYTSK 504


>gi|37527805|ref|NP_931150.1| DNA topoisomerase IV subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787241|emb|CAE16322.1| topoisomerase IV subunit B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  +E ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLAQEVIDNSVDEALAGHAKHIEVILHSD--QSLEVIDDGRGMPVDIHPEEGVSAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R   ++   QIA    
Sbjct: 89  ELILSRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRIEVTVRR--DSQIYQIAFENG 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                  V  + G       + F  P   +F  S +   + +T +++  A+  P V   F
Sbjct: 146 DKVQELTVIGSCGKRNTGTGVHF-WP-DESFFDSPRFSVSRLTHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +               ++ +
Sbjct: 204 KDKINGTEQKWCYADGLTDYLMAAVNGL 231


>gi|13471897|ref|NP_103464.1| heat shock protein 90 [Mesorhizobium loti MAFF303099]
 gi|17865487|sp|Q98JB6|HTPG_RHILO RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|14022641|dbj|BAB49250.1| heat shock protein; HtpG [Mesorhizobium loti MAFF303099]
          Length = 628

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 39/147 (26%)

Query: 27  IKELIENSLDAESS------------------RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                     R+        K    + DNG GM+ +++
Sbjct: 36  LRELISNAADACEKLRFEAVSRPELLGDDPKPRISISADPDNKE-ITVEDNGIGMSRDDM 94

Query: 69  PMAV---QRHCT--------SKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQ 114
             A+    R  T        S  ++D   I  F  GF      S   V+  + ++SR   
Sbjct: 95  AEALGTIARSGTRAFIERVGS-GTEDTQLIGQFGVGF-----YSAFMVADRVDVISRLAG 148

Query: 115 NNTGAQIAISGEKISSVRPVAMNPGTI 141
           +    + +  G+    + P  +     
Sbjct: 149 SEEAWRWSSDGKGSYEIAPAPLEAAPR 175


>gi|23100706|ref|NP_694173.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22778940|dbj|BAC15207.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 528

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 31  IENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+ DA    ++ +++  +   G     ++ DNG G++  +    +++  ++K
Sbjct: 428 IDNAFDAVVNTDNPKIDIFLTDMGNDLVIEVADNGTGISPADYDNIMKQGYSTK 481


>gi|89101114|ref|ZP_01173950.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
 gi|89084169|gb|EAR63334.1| DNA topoisomerase IV subunit B [Bacillus sp. NRRL B-14911]
          Length = 640

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +  +I     +   + D+G G+ 
Sbjct: 47 EIVDNSIDEALAGYCSEINVIIEKD--NSITVVDDGRGIP 84


>gi|84501601|ref|ZP_00999773.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597]
 gi|84390222|gb|EAQ02781.1| DNA topoisomerase IV, B subunit [Oceanicola batsensis HTCC2597]
          Length = 652

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +      +   + DNG GM  +
Sbjct: 48 VAEILDNSMDEAVAGHATRIEVELHEDYSLT---VRDNGRGMPFD 89


>gi|218708460|ref|YP_002416081.1| DNA topoisomerase IV subunit B [Vibrio splendidus LGP32]
 gi|218321479|emb|CAV17431.1| Topoisomerase IV subunit B [Vibrio splendidus LGP32]
          Length = 626

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 78/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
           ERP+   +E+I+NS+D   A  + +++ V+        ++TD+G GM  +         +
Sbjct: 30  ERPNHLAQEVIDNSVDEALAGHAKKIKVVLHAD--QSLEVTDDGRGMPVDIHPEKGISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S++     + G  G  +  + A+S  + +  R          +   +
Sbjct: 88  ELILTKLHSGGKFSNNNYK-FSGGLHGVGISVVNALSKRVEVTVRRDGQVHEIALEGGHA 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S +  T  + + +R  A+  P + 
Sbjct: 147 VTDLTVTGTCGHRNTGTTVHFW-------PDPKYFDSSKFSTLRLINNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TF  +     + +         + +++
Sbjct: 200 ITF--VDKVGGEEHKWFYEDGLKDYLAE 225


>gi|167901109|ref|ZP_02488314.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei NCTC 13177]
          Length = 667

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 551 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 610

Query: 77  TSK 79
           T+K
Sbjct: 611 TTK 613


>gi|150020807|ref|YP_001306161.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149793328|gb|ABR30776.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 176

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 32 ENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS---KIS 81
          ENS+ A +  V   I    K F F + D+G G+  +++        TS   KI 
Sbjct: 15 ENSIKAGAKNVILEIYETDKEFTFVVRDDGPGI--KDLNEVFDPFYTSRDKKIR 66


>gi|90415523|ref|ZP_01223457.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
          HTCC2207]
 gi|90332846|gb|EAS48016.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
          HTCC2207]
          Length = 630

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  +SR++  +   G     + D+G GM  +
Sbjct: 30 RPNHLAQEVIDNSVDEALAGHASRIDVTLHKDG--SLSVCDDGRGMPVD 76


>gi|53718065|ref|YP_107051.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei K96243]
 gi|52208479|emb|CAH34414.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei K96243]
          Length = 677

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 561 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 620

Query: 77  TSK 79
           T+K
Sbjct: 621 TTK 623


>gi|134292288|ref|YP_001116024.1| histidine kinase [Burkholderia vietnamiensis G4]
 gi|134135445|gb|ABO56559.1| histidine kinase [Burkholderia vietnamiensis G4]
          Length = 628

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI--- 46
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+       
Sbjct: 487 RIRDEGVQLD---VN-IAPGTTVSAESSQLQQVIVNLLGNALDAVRDAPVRRIVIEASGP 542

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
              G+    + D+G G+  + +P   +   T+K
Sbjct: 543 DDAGRVRLTVADSGAGIAPDVLPHLFEPFVTTK 575


>gi|305432569|ref|ZP_07401730.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli
           JV20]
 gi|304444280|gb|EFM36932.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter coli
           JV20]
          Length = 770

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 83/241 (34%), Gaps = 26/241 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIP----MAVQRH 75
           E+++NS+D   A     ++  I   G     ++DNG G+      +E +P    +    H
Sbjct: 41  EVVDNSIDEAMAGHCDTIDIEITTEG--SCIVSDNGRGIPVDMHPTENMPTLTVVLTVLH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K   D   + + G  G  +  + A+S   + +         Q    G+ IS    + 
Sbjct: 99  AGGKFDKDTYKV-SGGLHGVGVSVVNALSKKLIATVERNGEIYRQEFSEGKVISEFGVIG 157

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T   +          +        + +++    R +A   PK++  F    +   K
Sbjct: 158 KSKKTGTTIEFWPDDTIFEVTEF-----DYDILAKRFRELAYLNPKITINFK--DNRVGK 210

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
                  G   + +S +  ++ +   +  +    ++ ++       +N   +     F+N
Sbjct: 211 SESFHFEGGISQFVSDLNKKEALTKPIFFSVDEEDVNVEVAL---LYNDTYSENLLSFVN 267

Query: 256 G 256
            
Sbjct: 268 N 268


>gi|262382638|ref|ZP_06075775.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295516|gb|EEY83447.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 335

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A     S ++    +   G     + DNG G+  E I        T+K
Sbjct: 235 LLKNAIEACEESLSPQIVVEAVQKAGMVIISVIDNGSGIVPEAIDKVFVPFFTTK 289


>gi|311742169|ref|ZP_07715979.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
          marinum DSM 15272]
 gi|311314662|gb|EFQ84569.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Aeromicrobium
          marinum DSM 15272]
          Length = 666

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 8/49 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A  +S +E  + A GG     + D+G G+  +E P+
Sbjct: 49 VYEVVDNSVDEALAGHASHIEVTLLADGGVK---VVDDGRGIPVDEHPI 94


>gi|257051220|ref|YP_003129053.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940]
 gi|256689983|gb|ACV10320.1| DNA gyrase, B subunit [Halorhabdus utahensis DSM 12940]
          Length = 637

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I   G     +TD+G G+  +
Sbjct: 41 VYEVVDNAIDEALAGHCDHIEVTIHDDG--SVSVTDDGRGIPID 82


>gi|223945509|gb|ACN26838.1| unknown [Zea mays]
          Length = 771

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++NSLD     ++ V   +      G     + DNG GM  +++   +    +  SK+
Sbjct: 141 ELLDNSLDEVVHGATYVNIDMIESKKDGTPMLLVQDNGGGMNPDKMRHCMSLGYSAKSKV 200

Query: 81  SDDFSNIHTFG 91
            +    I  +G
Sbjct: 201 KN---TIGQYG 208


>gi|254381188|ref|ZP_04996553.1| chaperone protein htpG [Streptomyces sp. Mg1]
 gi|194340098|gb|EDX21064.1| chaperone protein htpG [Streptomyces sp. Mg1]
          Length = 643

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 45/166 (27%)

Query: 19  IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
           +I          ++ELI N+ DA           S          +   +    ++   +
Sbjct: 26  VIHSIYSNKDIFLRELISNASDALDKLRLESLTGSLAGVDISDLHISLEVDSDARTL-TV 84

Query: 57  TDNGFGMTSEEIPMAVQRHCTS-------KISD--DFSNIHTF------GFRGEALPSIG 101
            DNG GMT +++   +     S       KI +  D +   +       GF      S  
Sbjct: 85  RDNGIGMTRDDLVELIGTIAKSGTAGLLEKIKESKDAATTESLIGQFGVGF-----YSAF 139

Query: 102 AVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVR 145
            V+  +T+ +R    ++G Q    GE   +++    +  GT V + 
Sbjct: 140 MVADKVTVHTRRAGTDSGTQWESDGEGSYTIQAADDLPVGTSVTLH 185


>gi|167717885|ref|ZP_02401121.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei DM98]
          Length = 658

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 542 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 601

Query: 77  TSK 79
           T+K
Sbjct: 602 TTK 604


>gi|150021689|ref|YP_001307043.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149794210|gb|ABR31658.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 319

 Score = 45.0 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           S +  ++    K    + DNG G+  E+I    +R   SK
Sbjct: 240 STIYIIVD---KESITVKDNGIGIKKEDIKKVTERFYRSK 276


>gi|325288206|ref|YP_004264387.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
 gi|324963607|gb|ADY54386.1| DNA gyrase subunit B [Syntrophobotulus glycolicus DSM 8271]
          Length = 645

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     VE  I     +   + DNG G+  +
Sbjct: 52 VYEIVDNSIDEAMAGFCDNVEVTIHND--NSITVKDNGRGIPVD 93


>gi|319403540|emb|CBI77121.1| two-component sensor kinase BatS [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 555

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 22  RPSIAIKELIENSLDAES------SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
           R    I  LIEN   A S       ++   +     +    + DNG G+ SE I    +R
Sbjct: 439 RLGQVISNLIEN---ARSFVPRKNGKICITMKNNASNLILTVEDNGPGICSENIERIFER 495

Query: 75  HCT 77
             T
Sbjct: 496 FYT 498


>gi|237712366|ref|ZP_04542847.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229453687|gb|EEO59408.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 477

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 13  QIAAGEIIERP---SIAIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSE 66
           ++ +  +I  P   +  I  LIEN++      V      I  G     QITDNG G+   
Sbjct: 359 KMESTLVIADPVHIANIISNLIENAIKYSGKEVRIDLSCIQKGHTLTIQITDNGIGIPPA 418

Query: 67  EIPMAVQRHC 76
           E      +  
Sbjct: 419 EQSKVFDKFY 428


>gi|315230263|ref|YP_004070699.1| DNA topoisomerase VI subunit B [Thermococcus barophilus MP]
 gi|315183291|gb|ADT83476.1| DNA topoisomerase VI subunit B [Thermococcus barophilus MP]
          Length = 570

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTS 65
          I   +  + E + NSLDA  E+     V   I   G+      + DNG G+  
Sbjct: 33 IRSLTTVVHEAVTNSLDACEEAGILPYVRVEIEELGREHYKIIVEDNGPGIPE 85


>gi|229916169|ref|YP_002884815.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229467598|gb|ACQ69370.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 569

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R       LI N++   D+   R+E      G    Q+TD G G+  E++P   +R  
Sbjct: 456 DRLEQVFTNLIGNAIAHTDSGEIRIEATEETDGL-RIQLTDTGHGIPKEDLPFVFERFY 513


>gi|169235747|ref|YP_001688947.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium
          salinarum R1]
 gi|167726813|emb|CAP13599.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Halobacterium
          salinarum R1]
          Length = 637

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    R++  +   G     +TD+G G+ 
Sbjct: 41 VYEVVDNSIDEALAGYCDRIDVTLHDDG--SVSVTDDGRGIP 80


>gi|134279796|ref|ZP_01766508.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 305]
 gi|134248996|gb|EBA49078.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 305]
          Length = 677

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 561 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 620

Query: 77  TSK 79
           T+K
Sbjct: 621 TTK 623


>gi|126442211|ref|YP_001057510.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 668]
 gi|126451792|ref|YP_001064760.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 1106a]
 gi|126221704|gb|ABN85210.1| C4-dicarboxylate transport sensor protein DctB [Burkholderia
           pseudomallei 668]
 gi|126225434|gb|ABN88974.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 1106a]
          Length = 677

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 561 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 620

Query: 77  TSK 79
           T+K
Sbjct: 621 TTK 623


>gi|15790024|ref|NP_279848.1| DNA gyrase subunit B [Halobacterium sp. NRC-1]
 gi|10580452|gb|AAG19328.1| DNA gyrase subunit B [Halobacterium sp. NRC-1]
          Length = 611

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    R++  +   G     +TD+G G+ 
Sbjct: 15 VYEVVDNSIDEALAGYCDRIDVTLHDDG--SVSVTDDGRGIP 54


>gi|19909691|dbj|BAB87041.1| DNA gyrase subunit B [Halobacterium salinarum]
          Length = 575

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    R++  +   G     +TD+G G+ 
Sbjct: 9  VYEVVDNSIDEALAGYCDRIDVTLHDDG--SVSVTDDGRGIP 48


>gi|19909603|dbj|BAB86997.1| DNA gyrase subunit B [Halobacterium salinarum]
          Length = 443

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    R++  +   G     +TD+G G+ 
Sbjct: 7  VYEVVDNSIDEALAGYCDRIDVTLHDDG--SVSVTDDGRGIP 46


>gi|319786497|ref|YP_004145972.1| DNA topoisomerase IV subunit beta [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465009|gb|ADV26741.1| DNA topoisomerase IV, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 629

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+N++D   A  +  VE  +   G    +++D+G GM      EE    + 
Sbjct: 31  RPNHLAQEVIDNAVDEALAGHARTVEVTLYRDG--SCEVSDDGRGMPVDIHPEEKIPGVE 88

Query: 70  MAVQR-HCTSKISD 82
           + + R H   K S+
Sbjct: 89  LILTRLHAGGKFSN 102


>gi|297180059|gb|ADI16284.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), b
           subunit [uncultured bacterium HF0010_16H03]
          Length = 633

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 23/197 (11%)

Query: 22  RPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
            P+  I+E+++NS+D A     S ++  I   G    +I+DNG GM  +          E
Sbjct: 32  NPNHLIQEVLDNSVDEALSGHCSNIKINILKDG--NIKISDNGRGMPVDIHPEHNVSGVE 89

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
           + +  + H  +K S D  N  + G  G  +  + A+S  L +  R   +     I  +G 
Sbjct: 90  LIL-CKLHAGAKFSGDDYN-FSGGLHGVGVSVVNALSERLEVNVR-RNSKEYQIIFENGH 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           K+S ++ V            +F   P    + ++ +V+   +  +++  A+  P ++  F
Sbjct: 147 KVSELKEVGEVGIRNTGTSIIFRPNPV---YFENIEVQIKALKHLLKAKAVLCPGLTLEF 203

Query: 187 STIKSNRYKMNFQSTNG 203
           +  K  + K  +   +G
Sbjct: 204 ANEKKPKDKEKWYFEDG 220


>gi|167844112|ref|ZP_02469620.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei B7210]
          Length = 673

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 557 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 616

Query: 77  TSK 79
           T+K
Sbjct: 617 TTK 619


>gi|167814007|ref|ZP_02445687.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 91]
          Length = 660

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 544 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 603

Query: 77  TSK 79
           T+K
Sbjct: 604 TTK 606


>gi|73667042|ref|YP_303058.1| DNA gyrase subunit B [Ehrlichia canis str. Jake]
 gi|72394183|gb|AAZ68460.1| DNA gyrase subunit B [Ehrlichia canis str. Jake]
          Length = 798

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A   ++++ VI   G     +TDNG G+  +
Sbjct: 39 VYEVIDNSIDEALAGFCNKIDIVIQSDG--SVSVTDNGRGIPVD 80


>gi|134297887|ref|YP_001111383.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
 gi|134050587|gb|ABO48558.1| DNA gyrase subunit B [Desulfotomaculum reducens MI-1]
          Length = 638

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++   I     +   + DNG G+  +
Sbjct: 44 VYEVVDNSIDEALAGYCDKIIVTIQED--NSITVEDNGRGIPVD 85


>gi|203287878|ref|YP_002222893.1| DNA gyrase, subunit B [Borrelia recurrentis A1]
 gi|201085098|gb|ACH94672.1| DNA gyrase, subunit B [Borrelia recurrentis A1]
          Length = 639

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R+E VI     +   + DNG G+ ++
Sbjct: 42 VYEIVDNSIDEALAGFCDRIEVVINSD--NSIMVNDNGRGIPTD 83


>gi|203284344|ref|YP_002222084.1| DNA gyrase, subunit B [Borrelia duttonii Ly]
 gi|201083787|gb|ACH93378.1| DNA gyrase, subunit B [Borrelia duttonii Ly]
          Length = 639

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R+E VI     +   + DNG G+ ++
Sbjct: 42 VYEIVDNSIDEALAGFCDRIEVVINSD--NSIMVNDNGRGIPTD 83


>gi|157148595|ref|YP_001455914.1| DNA topoisomerase IV subunit B [Citrobacter koseri ATCC BAA-895]
 gi|157085800|gb|ABV15478.1| hypothetical protein CKO_04422 [Citrobacter koseri ATCC BAA-895]
          Length = 630

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDAQVYSIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T +++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHILKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|332304390|ref|YP_004432241.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171719|gb|AEE20973.1| DNA gyrase, B subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 806

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     + D+G G+ +E
Sbjct: 44 EVVDNSIDEALAGHCTNINVKIHTDG--SVSVKDDGRGIPTE 83


>gi|328541628|ref|YP_004301737.1| DNA gyrase subunit B [polymorphum gilvum SL003B-26A1]
 gi|326411380|gb|ADZ68443.1| DNA gyrase subunit B [Polymorphum gilvum SL003B-26A1]
          Length = 817

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 13/55 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           + E+++N++D   A  + RV   +   G     +TDNG G+   ++      H T
Sbjct: 56  VYEVVDNAIDEALAGHADRVTVTLNADG--SVTVTDNGRGI-PTDV------HAT 101


>gi|325294445|ref|YP_004280959.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325064893|gb|ADY72900.1| DNA gyrase, B subunit [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 804

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A   + ++ +I     +   + DNG G+  +
Sbjct: 43 EIIDNSVDEALAGYCTEIKVIIHED--NSITVEDNGRGIPVD 82


>gi|310781133|gb|ADP24042.1| DNA gyrase B subunit [Thermoanaerobacter uzonensis]
          Length = 396

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
          + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 5  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKXGKPAVEVALTM 62

Query: 75 -HCTSKISDDFSNIH 88
           H   K ++D   + 
Sbjct: 63 LHAGGKFNNDAYKVS 77


>gi|237810662|ref|YP_002895113.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei MSHR346]
 gi|237504142|gb|ACQ96460.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei MSHR346]
          Length = 677

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 561 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 620

Query: 77  TSK 79
           T+K
Sbjct: 621 TTK 623


>gi|256830416|ref|YP_003159144.1| CheA signal transduction histidine kinase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579592|gb|ACU90728.1| CheA signal transduction histidine kinase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 682

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLDAE--------SS------RVETVIA-GGGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D          +       R+E      GG+   +I D+G G
Sbjct: 410 TVIERLNDPLVHLLRNSIDHGIESPEERQAKGKKPEGRIELSAEHSGGEVLIRIIDDGAG 469

Query: 63  MTSE 66
           +  +
Sbjct: 470 IDPD 473


>gi|227326913|ref|ZP_03830937.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 631

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S       + G  G  +  + A+S  + +  +      +   +    
Sbjct: 89  ELILCRLHAGGKFSGKNYQ-FSGGLHGVGISVVNALSTRVEVTVKRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            ++++        N GT V              F  S +   + +T +++  A+  P V 
Sbjct: 148 VQELTVTGTCGRRNTGTRVHFW-------PDEKFFDSPRFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +        N    E ++ +
Sbjct: 201 IIFKDKVNNTEQRWCYQDGLNDYLCEAVNGL 231


>gi|109896336|ref|YP_659591.1| DNA gyrase, B subunit [Pseudoalteromonas atlantica T6c]
 gi|109698617|gb|ABG38537.1| DNA gyrase subunit B [Pseudoalteromonas atlantica T6c]
          Length = 806

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     + D+G G+ +E
Sbjct: 44 EVVDNSIDEALAGHCTNINVKIHTDG--SVSVKDDGRGIPTE 83


>gi|95931397|ref|ZP_01314107.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132553|gb|EAT14242.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 497

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+ DA     +  +        K   ++ DNG G+  + +        T+K
Sbjct: 398 LILNARDATDSYGAITIT-ATENDSKITIKVEDNGHGIEGQSLETIFDPFYTTK 450


>gi|323357952|ref|YP_004224348.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Microbacterium testaceum StLB037]
 gi|323274323|dbj|BAJ74468.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Microbacterium testaceum StLB037]
          Length = 677

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++E+++NS+D   A     ++  I   G    ++ DNG G+  +
Sbjct: 58 VQEIVDNSVDEALAGYCDTIDVTILSDGA--VRVVDNGRGIPVD 99


>gi|298246161|ref|ZP_06969967.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553642|gb|EFH87507.1| DNA gyrase, B subunit [Ktedonobacter racemifer DSM 44963]
          Length = 668

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE 67
           I+E+++NS+D   A  +  ++  I   G     I DNG G+  EE
Sbjct: 73  IQEVVDNSVDEVMAGYADTIQVTIHADG--SVTIEDNGRGIPVEE 115


>gi|297581951|ref|ZP_06943871.1| DNA gyrase subunit B [Vibrio cholerae RC385]
 gi|297533818|gb|EFH72659.1| DNA gyrase subunit B [Vibrio cholerae RC385]
          Length = 247

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 21/188 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGKIHTQTYHHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS   +  +    K
Sbjct: 159 DTERTGTTVRF----WPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKK 213

Query: 196 MNFQSTNG 203
            +F    G
Sbjct: 214 DHFMYEGG 221


>gi|237726554|ref|ZP_04557035.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435080|gb|EEO45157.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 477

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 13  QIAAGEIIERP---SIAIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSE 66
           ++ +  +I  P   +  I  LIEN++      V      I  G     QITDNG G+   
Sbjct: 359 KMESTLVIADPVHIANIISNLIENAIKYSGKEVRIDLSCIQKGHTLTIQITDNGIGIPPA 418

Query: 67  EIPMAVQRHC 76
           E      +  
Sbjct: 419 EQSKVFDKFY 428


>gi|255654990|ref|ZP_05400399.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-23m63]
 gi|296449739|ref|ZP_06891509.1| two component system sensor histidine kinase [Clostridium difficile
           NAP08]
 gi|296877944|ref|ZP_06901963.1| two component system sensor histidine kinase [Clostridium difficile
           NAP07]
 gi|296261463|gb|EFH08288.1| two component system sensor histidine kinase [Clostridium difficile
           NAP08]
 gi|296431012|gb|EFH16840.1| two component system sensor histidine kinase [Clostridium difficile
           NAP07]
          Length = 495

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHC 76
           LIEN+L  A+S  ++ V     K+    + D+G G+  E++P   +R  
Sbjct: 406 LIENALRYAKS-EIKIVCKHNQKNIVVIVEDDGIGIKKEDLPHVFERFY 453


>gi|212691184|ref|ZP_03299312.1| hypothetical protein BACDOR_00675 [Bacteroides dorei DSM 17855]
 gi|212666416|gb|EEB26988.1| hypothetical protein BACDOR_00675 [Bacteroides dorei DSM 17855]
          Length = 477

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 13  QIAAGEIIERP---SIAIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSE 66
           ++ +  +I  P   +  I  LIEN++      V      I  G     QITDNG G+   
Sbjct: 359 KMESTLVIADPVHIANIISNLIENAIKYSGKEVRIDLSCIQKGHTLTIQITDNGIGIPPA 418

Query: 67  EIPMAVQRHC 76
           E      +  
Sbjct: 419 EQSKVFDKFY 428


>gi|254387096|ref|ZP_05002370.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
 gi|194345915|gb|EDX26881.1| DNA gyrase subunit B [Streptomyces sp. Mg1]
          Length = 686

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+  +
Sbjct: 66  VYEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIPVD 107


>gi|157737947|ref|YP_001490631.1| ATPase, putative [Arcobacter butzleri RM4018]
 gi|157699801|gb|ABV67961.1| ATPase, putative [Arcobacter butzleri RM4018]
          Length = 604

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 83/269 (30%), Gaps = 39/269 (14%)

Query: 25  IAIKELIENSLDAESSRVETV-----IAGGG----KSFFQITDNGFGMTSEEIPMAVQRH 75
             + E I NS+ A ++ +E       I   G         I DNG G T + I  +   H
Sbjct: 20  SVLNEAITNSIQANATEIEIYFYTLPIDLFGDTRKVKNISIIDNGDGFTDKNID-SFN-H 77

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
             S+           G +G        +   T ++   +    +       K +      
Sbjct: 78  YMSEYKQAL------GCKG--------IGRFTYLTICEKVEFESYNNNKNIKFNFNLDTE 123

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSE----------QVETNLITDVIRRMAIAYPKVSFT 185
           +   T++E  +       +   +++           +   N    + + M      V   
Sbjct: 124 LIKPTVIENEEFIKQTKLKYINIENREVSSDLSVEAKEIINHFLSIFKFMVDENKNVLIK 183

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRG 245
                  +  +  +    NF +    +   D      E  + S +       G    ++ 
Sbjct: 184 LYIDDVLKESIEAKEHGSNFIDEEFTIKVRDIE----ETFKVSYKQKGSSIKGFYCADKR 239

Query: 246 NANQFYVFINGRTVQDKFILSTIRTAYAE 274
           +  Q  + +N RT +DK +L  + + + +
Sbjct: 240 SVKQDGLDVNFRTSKDKGLLFFVTSTFFD 268


>gi|83717352|ref|YP_439917.1| sensor histidine kinase [Burkholderia thailandensis E264]
 gi|257143081|ref|ZP_05591343.1| sensor histidine kinase [Burkholderia thailandensis E264]
 gi|83651177|gb|ABC35241.1| sensor histidine kinase [Burkholderia thailandensis E264]
          Length = 504

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   +   G  +  ++ D+G G+  EE     +R   S
Sbjct: 365 LIDNAIRYAGD-GA-VITVRVAREGDVARLEVIDDGPGIAPEERDAVFERFYRS 416


>gi|329894833|ref|ZP_08270633.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088]
 gi|328922727|gb|EGG30061.1| DNA gyrase subunit B [gamma proteobacterium IMCC3088]
          Length = 805

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 34/182 (18%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           E+++NS+D   A   S +E V+         ++D+G G+ +E         E+ M V  H
Sbjct: 43  EVVDNSIDEALAGFCSTIEIVVHPD--ESITVSDDGRGIPTEMHEEGVSAAEVIMTVL-H 99

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      LTL  R        Q    G   +
Sbjct: 100 AGGKFDDNTYKV-SGGLHGVGVSVVNALSS-----SLTLTVRRQG-KVFEQHYQHGVPQA 152

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
            +  V     T   VR              + +   +++   +R +A     V+   +  
Sbjct: 153 PLAVVGETQNTGTTVR-----FSPSPETFSNIEFHFDILAKRLRELAFLNSGVNIKLTDE 207

Query: 190 KS 191
           +S
Sbjct: 208 RS 209


>gi|326799865|ref|YP_004317684.1| DNA gyrase B subunit [Sphingobacterium sp. 21]
 gi|326550629|gb|ADZ79014.1| DNA gyrase, B subunit [Sphingobacterium sp. 21]
          Length = 652

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEE---IPMA-VQ 73
           + E+++NS+D   A   + +  +I     +   + DNG G+       E    + M    
Sbjct: 45  VYEVVDNSIDEALAGYCTDIHVIIHKD--NSITVEDNGRGIPTGINKKENKSALEMVMTM 102

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K   D   + + G  G  +  + A+S L +     +     Q    G+ +  V+ 
Sbjct: 103 LHAGGKFDKDTYKV-SGGLHGVGVSCVNALSTLLIAEVHREGKIFKQEYAQGKPLYDVKV 161

Query: 134 VAMNPGTIVEVR 145
           +     T   V 
Sbjct: 162 IGETDRTGTNVT 173


>gi|299065115|emb|CBJ36279.1| sensory histidine kinase [Ralstonia solanacearum CMR15]
          Length = 439

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 4   RKLSEKII----NQIAAGEIIERPSIAIKELIENSL----DAESSRVETVIA-GGGKSFF 54
           ++L   +      ++ AGE      + ++ L++N++    D  S  ++  +   GG +  
Sbjct: 312 KRLDLGVTTDADARVCAGE--LDLFVILRNLVDNAIRYTPDGGS--IDLSLRTDGGLAHI 367

Query: 55  QITDNGFGMTSEEIPMAVQRHC 76
            + D G G+ + E         
Sbjct: 368 TVQDTGPGIPASERARVFDAFY 389


>gi|292492462|ref|YP_003527901.1| DNA topoisomerase IV subunit beta [Nitrosococcus halophilus Nc4]
 gi|291581057|gb|ADE15514.1| DNA topoisomerase IV, B subunit [Nitrosococcus halophilus Nc4]
          Length = 628

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          +RP+   +E+I+NS+D   A  ++++E V+   G     + D+G GM  +
Sbjct: 30 QRPNHLAQEVIDNSVDEAIAGFATQIEVVLHPDG--SLSVGDDGRGMPVD 77


>gi|220919484|ref|YP_002494788.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957338|gb|ACL67722.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 363

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 16/75 (21%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETV---------IAGG---GKSFFQITDNGFGMT 64
           E+    +  L+ N++DA +S    RV            +A G     +   I D G G+ 
Sbjct: 246 EKLMQVVLNLVRNAVDAVASTAAPRVTIETSVSPLRLRVASGRTRPLARISIQDEGPGIP 305

Query: 65  SEEIPMAVQRHCTSK 79
              +        TSK
Sbjct: 306 EAMLQRLFTPFATSK 320


>gi|154506022|ref|ZP_02042760.1| hypothetical protein RUMGNA_03564 [Ruminococcus gnavus ATCC 29149]
 gi|153793521|gb|EDN75941.1| hypothetical protein RUMGNA_03564 [Ruminococcus gnavus ATCC 29149]
          Length = 305

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 30  LIENSL----DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L+EN++    +  +  ++  +      +  +ITD G G+  EE+P   QR   SK  ++ 
Sbjct: 207 LLENAVKYTSEGGA--IQIDLKQYEMYAEIRITDTGIGIRKEEMPRIFQRFYRSKDVENL 264

Query: 85  S 85
            
Sbjct: 265 E 265


>gi|242316669|ref|ZP_04815685.1| C4-dicarboxylate transport sensor protein DctB [Burkholderia
           pseudomallei 1106b]
 gi|242139908|gb|EES26310.1| C4-dicarboxylate transport sensor protein DctB [Burkholderia
           pseudomallei 1106b]
          Length = 627

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 511 RLEQVLINLLGNALDAVAAVAAPRIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFF 570

Query: 77  TSK 79
           T+K
Sbjct: 571 TTK 573


>gi|326386565|ref|ZP_08208187.1| signal transduction histidine kinase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208880|gb|EGD59675.1| signal transduction histidine kinase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 442

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 20  IER--PSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++R   S AI  L++N+L     R+    A    ++   + D+G G+ +E+    V+R  
Sbjct: 333 VDRELLSRAIANLVDNALKYGGHRIVLRTAALPTQAEIDVIDDGPGIPAEDRQRVVERFV 392

Query: 77  TSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
                    N  T    G  L  + AV+ L
Sbjct: 393 ------RLDNARTLPGGGLGLAMVAAVARL 416


>gi|320106357|ref|YP_004181947.1| histidine kinase [Terriglobus saanensis SP1PR4]
 gi|319924878|gb|ADV81953.1| histidine kinase [Terriglobus saanensis SP1PR4]
          Length = 486

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 18/62 (29%)

Query: 29  ELIENSLDAESSRVETVIAGGGK-----------SFFQITDNGFGMTSEEIPMAVQRHCT 77
           ELIEN++DA S         GG               +I D+G G+  E +P   +   T
Sbjct: 385 ELIENAIDAMS-------EDGGILTLRARVSGNFFLVEICDSGHGILPEILPRIFEPFFT 437

Query: 78  SK 79
           +K
Sbjct: 438 TK 439


>gi|295979577|dbj|BAJ07461.1| DNA gyrase subunit B [Ralstonia sp. GTF1Y]
          Length = 324

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + +   I     +   ITDNG G+  
Sbjct: 14 EVLDNSIDEALAGWCTEITVTIHSD--NSISITDNGRGIPP 52


>gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
 gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
          Length = 878

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              G+    + DNG G++S+E+P    R  
Sbjct: 516 EENGRVMISVADNGCGISSDELPYIFDRFY 545


>gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 878

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              G+    + DNG G++S+E+P    R  
Sbjct: 516 EENGRVMISVADNGCGISSDELPYIFDRFY 545


>gi|227872280|ref|ZP_03990639.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841892|gb|EEJ52163.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   +   G     + DNG G+  +
Sbjct: 41 EIVDNSVDEHLAGYCTEISVTLHKDG--SCTVRDNGRGIPVD 80


>gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
          Length = 473

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 25  IAIKELIENSL-----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             +  L++N++     D   S +        G++F  + DNG G+  +++    +R  
Sbjct: 363 QVVYNLVDNAVKFSHPD---SFIAISTTTKNGRAFISVKDNGIGIPKDDLKKIWERFY 417


>gi|239617965|ref|YP_002941287.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506796|gb|ACR80283.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 428

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 21/86 (24%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAV 72
           R    +K LI N++       DA    V   +   G     +   DNG G+  +      
Sbjct: 324 RLENVLKNLILNAIEACENVDDA---SVTVKLRE-GSDIVTVIICDNGPGIEPKNAEKIF 379

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALP 98
           +   T+K           GF G AL 
Sbjct: 380 KIFFTTK-------PQGTGF-GLALA 397


>gi|91200750|emb|CAJ73802.1| hypothetical histidine kinase protein [Candidatus Kuenenia
            stuttgartiensis]
          Length = 1066

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 33   NSLDA--ESSRVETVIAGGGKSF-----FQITDNGFGMTSEEIPMAVQRHCTSK 79
            NSLDA  +  R+  V+              I+DNG GM   EI    +   T+K
Sbjct: 959  NSLDAMPDGGRIRIVVRKTTLFLRNAIEIIISDNGIGMAEHEINKVFEPFYTTK 1012


>gi|47459221|ref|YP_016083.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
 gi|47458550|gb|AAT27872.1| topoisomerase IB subunit B [Mycoplasma mobile 163K]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +++++  +   G     + DNG G+  +
Sbjct: 41 EIVDNSIDEAIANFANKIQVTLTKDG--SVIVEDNGRGIPVD 80


>gi|1708090|sp|P50075|GYRBS_STRSH RecName: Full=DNA gyrase subunit B, novobiocin-sensitive
 gi|581743|emb|CAA78952.1| gyrase B (novobiocin-sensitive) [Streptomyces caeruleus]
          Length = 684

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 60 VTEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 99


>gi|87309865|ref|ZP_01091999.1| sensor protein atoS [Blastopirellula marina DSM 3645]
 gi|87287629|gb|EAQ79529.1| sensor protein atoS [Blastopirellula marina DSM 3645]
          Length = 433

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 21  ERPSIAIKELIENSLDA--ESS--RVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           E    A+  ++ N++DA   +   +VE  I       +    + DNG G+ +E+I     
Sbjct: 312 EGLHRAVLNVVSNAIDACLSADEPKVEVSIVLDESAQRLNIDVVDNGCGIPAEKIESIFT 371

Query: 74  RHCTSK 79
              +SK
Sbjct: 372 AFESSK 377


>gi|296242525|ref|YP_003650012.1| DNA topoisomerase VI subunit B [Thermosphaera aggregans DSM
          11486]
 gi|296095109|gb|ADG91060.1| DNA topoisomerase VI, B subunit [Thermosphaera aggregans DSM
          11486]
          Length = 532

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 13/57 (22%)

Query: 27 IKELIENSLDA-ESSRV----ETVIAGGGKSFFQ------ITDNGFGMTSEEIPMAV 72
          ++EL EN+LDA ++  +    +  I        Q      + DNG G+  + +P A 
Sbjct: 40 VRELYENALDATDAHGILPDVKISIKR--VDEIQEYYRVTVEDNGIGLPPDVVPNAF 94


>gi|293604498|ref|ZP_06686903.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter
          piechaudii ATCC 43553]
 gi|292817079|gb|EFF76155.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Achromobacter
          piechaudii ATCC 43553]
          Length = 653

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          E P   ++E+I+N+ D   A    +++  +   G     + D+G G+      EE    +
Sbjct: 31 ENPLHVVQEVIDNAADEALAGYGKQIQVTLHSDG--SVSVEDDGRGIPVGLHPEEGAPVV 88

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 89 ELVFTRLHA 97


>gi|240950305|ref|ZP_04754580.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305]
 gi|240295207|gb|EER46015.1| DNA topoisomerase IV subunit B [Actinobacillus minor NM305]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 81/209 (38%), Gaps = 27/209 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   +  +++++ ++     +  ++ DNG GM  +         +
Sbjct: 31  TRPNHLGQEVIDNSVDEALSGYATQIDVILHKD--NSLEVIDNGRGMPVDIHSTEKMSGV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAIS 124
            + + + H   K S+     +TF  G  G  +  + A+S  + +  +            +
Sbjct: 89  ELILTKLHAGGKFSN---KNYTFSGGLHGVGISVVNALSERVEITIKRNG-EIYTIAFAN 144

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--V 182
           G K+  +  V   P         F+  P    +  S +   + +  +++  A+  PK  +
Sbjct: 145 GVKVEDLTVVGSCPKRQTGTTVRFYPNP---KYFDSPKFSVSRLRHLLKAKAVLCPKLTI 201

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           +FT     +          +    E + +
Sbjct: 202 NFTDKINDTQESWYYEDGLSDYLSEALKE 230


>gi|223041848|ref|ZP_03612036.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202]
 gi|223017341|gb|EEF15764.1| DNA topoisomerase IV subunit B [Actinobacillus minor 202]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 81/209 (38%), Gaps = 27/209 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   +  +++++ ++     +  ++ DNG GM  +         +
Sbjct: 31  TRPNHLGQEVIDNSVDEALSGYATQIDVILHKD--NSLEVIDNGRGMPVDIHSTEKMSGV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAIS 124
            + + + H   K S+     +TF  G  G  +  + A+S  + +  +            +
Sbjct: 89  ELILTKLHAGGKFSN---KNYTFSGGLHGVGISVVNALSERVEITIKRNG-EIYTIAFAN 144

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--V 182
           G K+  +  V   P         F+  P    +  S +   + +  +++  A+  PK  +
Sbjct: 145 GVKVEDLTVVGSCPKRQTGTTVRFYPNP---KYFDSPKFSVSRLRHLLKAKAVLCPKLTI 201

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           +FT     +          +    E + +
Sbjct: 202 NFTDKINDTQESWYYEDGLSDYLSEALKE 230


>gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
 gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    I  L+EN++    +  E  +      G      + D+G G+  +++     R  
Sbjct: 523 DRLMQVITNLVENAIKFNPTNGEIYLGAYEDEGNIHLI-VQDHGAGIPEKDLEKIFDRFY 581

Query: 77  ----TSK 79
               +SK
Sbjct: 582 QVDSSSK 588


>gi|89114222|gb|ABD61706.1| DNA gyrase subunit B [Acholeplasma modicum]
 gi|89114224|gb|ABD61707.1| DNA gyrase subunit B [Acholeplasma modicum]
          Length = 547

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +  +   I  G     ++TDNG G+  +
Sbjct: 13 EIVDNSIDEALGGYADEITLEILKG--EVIRVTDNGRGIPVD 52


>gi|148656202|ref|YP_001276407.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568312|gb|ABQ90457.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 489

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +     A+ E+++N++   DA +  +   +   G +   I D G G+  EE  +      
Sbjct: 367 VTTLRHALHEVVDNAIRYSDAGTVTITASLRD-GLAVITIEDQGPGIPPEEQDLLFNAFY 425


>gi|116491823|ref|YP_803558.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745]
 gi|116101973|gb|ABJ67116.1| DNA gyrase subunit B [Pediococcus pentosaceus ATCC 25745]
          Length = 648

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  + +++ ++     +   +TDNG G+  +
Sbjct: 51 EIIDNGIDEALAGFADKIDVIVEKD--NSITVTDNGRGIPVD 90


>gi|330828212|ref|YP_004391164.1| DNA topoisomerase IV subunit B [Aeromonas veronii B565]
 gi|328803348|gb|AEB48547.1| DNA topoisomerase IV, B subunit [Aeromonas veronii B565]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 77/201 (38%), Gaps = 30/201 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +  +E ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHARNLEVILHED--QSLEVIDDGRGMPVDIHPEEGVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R      +   +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSDRVEVTVRRDGQVYDIAFERGE 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             ++++        N GT V           + ++  S +     +  +++  A+  P +
Sbjct: 146 KVQELTITGTCGRRNTGTRVRFW-------PQASYFDSPKFSVTKLEHLLKAKAVLCPGL 198

Query: 183 SFTFSTIKSNRYKMNFQSTNG 203
           +  F   K+   K+ +   +G
Sbjct: 199 TIKF-LDKNTGIKLEWCYEDG 218


>gi|319940695|ref|ZP_08015037.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B]
 gi|319805846|gb|EFW02613.1| DNA gyrase subunit B [Sutterella wadsworthensis 3_1_45B]
          Length = 849

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +S +E  I     +   +TD+G G+ 
Sbjct: 68  VYEVVDNSIDEALAGFASHIEVTIHTD--NSISVTDDGRGIP 107


>gi|306834803|ref|ZP_07467867.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
          accolens ATCC 49726]
 gi|304569331|gb|EFM44832.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
          accolens ATCC 49726]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +V   +   GG    ++ DNG G+  E
Sbjct: 43 EIVDNSVDEAMAGFADKVTVKLLEDGG---VEVIDNGRGIPVE 82


>gi|291085946|ref|ZP_06571272.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
 gi|291068978|gb|EFE07087.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
          Length = 791

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 24/110 (21%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----SK- 79
            A+ EL +N+ DA +  VE       ++   + D+G GMT EE     +R  T    SK 
Sbjct: 24  TALSELFKNAHDAYADNVEVDYIR-KRNLLILRDDGLGMTREEFE---ERWLTIGTDSKF 79

Query: 80  ISDD---FSNIHT-------FGFRGE---ALPSIGAVSHLTLMSRPPQNN 116
           I +D      + T        G +G    A+ SIG    + +++R  +N+
Sbjct: 80  IDEDSIGLPEVDTAKTARPIMGEKGIGRLAIASIG--PQVLVLTRSRKND 127


>gi|259508306|ref|ZP_05751206.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
 gi|259164124|gb|EEW48678.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + RV+  +   GG    ++ DNG G+  E
Sbjct: 17 EVVDNSVDEAMAGYADRVDVTLLEDGG---VEVIDNGRGIPVE 56


>gi|297570128|ref|YP_003691472.1| ATP-binding region ATPase domain protein [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926043|gb|ADH86853.1| ATP-binding region ATPase domain protein [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 554

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 25 IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
            + E I N+ DA++  V   I     +F  I D+G GM +++      +   SK  D
Sbjct: 29 TVLGEAISNAWDADAKNVWIDIDRESSTF-SIRDDGIGMDADDFQNKFLKIGYSKRKD 85


>gi|255324004|ref|ZP_05365129.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298861|gb|EET78153.1| DNA gyrase, B subunit [Corynebacterium tuberculostearicum SK141]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +V   +   GG    ++ DNG G+  E
Sbjct: 43 EIVDNSVDEAMAGYADKVTVKLLEDGG---VEVIDNGRGIPVE 82


>gi|311741695|ref|ZP_07715517.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311303216|gb|EFQ79297.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 689

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +V   +   GG    ++ DNG G+  E
Sbjct: 43 EIVDNSVDEAMAGYADKVTVKLLEDGG---VEVIDNGRGIPVE 82


>gi|227502246|ref|ZP_03932295.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725]
 gi|227077070|gb|EEI15033.1| DNA gyrase subunit B [Corynebacterium accolens ATCC 49725]
          Length = 663

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +V   +   GG    ++ DNG G+  E
Sbjct: 17 EIVDNSVDEAMAGFADKVTVKLLEDGG---VEVIDNGRGIPVE 56


>gi|190575790|ref|YP_001973635.1| putative two-component system sensor histidine kinase protein
           [Stenotrophomonas maltophilia K279a]
 gi|190013712|emb|CAQ47347.1| putative two-component system sensor histidine kinase protein
           [Stenotrophomonas maltophilia K279a]
          Length = 463

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 22/119 (18%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           AIK L++N+L    D    ++   +  GG++   I D+G G+ + +     +R       
Sbjct: 362 AIKNLVDNALKYGGD-GPLQIALTVE-GGQAVLTIADHGAGIAAADAERVFERFA----- 414

Query: 82  DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGT 140
                      RGE  PS GA   L ++ R   ++ G     +  +   V  + +   T
Sbjct: 415 -----------RGEGAPSGGAGLGLAIVKRVVDSHGGRIDLSNRPQGGLVATIRLPRST 462


>gi|25026562|ref|NP_736616.1| DNA gyrase subunit B [Corynebacterium efficiens YS-314]
 gi|23491841|dbj|BAC16816.1| putative DNA gyrase subunit B [Corynebacterium efficiens YS-314]
          Length = 687

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + RV+  +   GG    ++ DNG G+  E
Sbjct: 44 EVVDNSVDEAMAGYADRVDVTLLEDGG---VEVIDNGRGIPVE 83


>gi|13474248|ref|NP_105816.1| two-component sensor histidine kinase ExoS [Mesorhizobium loti
           MAFF303099]
 gi|14025000|dbj|BAB51602.1| two-component sensor histidine kinase; ExoS [Mesorhizobium loti
           MAFF303099]
          Length = 594

 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 17  GEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPM 70
           G+++         LIEN+      D     +   +A  GK     + DNG G+ ++ I  
Sbjct: 481 GQVVTN-------LIENARSFVPEDHG--HISLSLARAGKFNILTVDDNGPGIRADNIDR 531

Query: 71  AVQRHCT 77
             +R  T
Sbjct: 532 IFERFYT 538


>gi|303234457|ref|ZP_07321095.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
 gi|302494412|gb|EFL54180.1| DNA gyrase, B subunit [Finegoldia magna BVS033A4]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ--------- 73
           + E+++NS+D   A     ++  I     +   + D+G G+  E  P   +         
Sbjct: 41  VYEVVDNSIDEALAGVCDLIKVTIKKD--NSIIVEDDGSGIPVETHPKTGKSTLETVLTV 98

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K S+D    ++ G  G  +  + A+S   L++R  ++    +      K  +   
Sbjct: 99  LHAGGKFSNDAYQ-YSGGLHGVGVSCVNALS-TYLIARVKRDGKMYEQRFEKGKTVTGLT 156

Query: 134 V-------------AMNPGTIVEVRDLFFTIPARL 155
           V              M   TI E  +    + A+ 
Sbjct: 157 VVKENVRGTGTTIEFMPDDTIFETLNFDRNVLAKR 191


>gi|302380141|ref|ZP_07268614.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312083|gb|EFK94091.1| DNA gyrase, B subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ--------- 73
           + E+++NS+D   A     ++  I     +   + D+G G+  E  P   +         
Sbjct: 41  VYEVVDNSIDEALAGVCDLIKVTIKKD--NSIIVEDDGSGIPVETHPKTGKSTLETVLTV 98

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K S+D    ++ G  G  +  + A+S   L++R  ++    +      K  +   
Sbjct: 99  LHAGGKFSNDAYQ-YSGGLHGVGVSCVNALS-TYLIARVKRDGKMYEQRFEKGKTVTGLT 156

Query: 134 V-------------AMNPGTIVEVRDLFFTIPARL 155
           V              M   TI E  +    + A+ 
Sbjct: 157 VVKENVRGTGTTIEFMPDDTIFETLNFDRNVLAKR 191


>gi|317151881|ref|YP_004119929.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942132|gb|ADU61183.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 670

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 14/71 (19%)

Query: 22  RPSIAIKELIENSLDA----------ESSRVETVIAGG--GKS-FFQITDNGFGMTSEEI 68
           R    +  L+ N+ DA           S R    I  G  G S F ++ D G G+  E+ 
Sbjct: 550 RLQQVVFNLVANARDAINDKSSPHDEGSDR-RISIRSGAEGASVFIEVEDTGSGIDEEDR 608

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 609 EKIFEPFFTTK 619


>gi|291297295|ref|YP_003508693.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279]
 gi|290472254|gb|ADD29673.1| DNA topoisomerase (ATP-hydrolyzing) [Meiothermus ruber DSM 1279]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ + T +   G     + DNG G+  +
Sbjct: 44 KEILDNAVDEALAGFATEIVTTLHPDG--SITVEDNGRGIPVD 84


>gi|194737287|ref|YP_002117074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197301231|ref|ZP_02664657.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194712789|gb|ACF92010.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287721|gb|EDY27112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322616282|gb|EFY13192.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617275|gb|EFY14177.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625953|gb|EFY22768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626649|gb|EFY23451.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631484|gb|EFY28241.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635197|gb|EFY31915.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642598|gb|EFY39194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646809|gb|EFY43313.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650807|gb|EFY47200.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655893|gb|EFY52194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657292|gb|EFY53571.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665554|gb|EFY61739.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669737|gb|EFY65882.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670984|gb|EFY67116.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322679192|gb|EFY75245.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679350|gb|EFY75397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322688117|gb|EFY84081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195790|gb|EFZ80965.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200695|gb|EFZ85768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202184|gb|EFZ87240.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209295|gb|EFZ94230.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211620|gb|EFZ96457.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218042|gb|EGA02755.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221331|gb|EGA05753.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225742|gb|EGA09963.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230970|gb|EGA15087.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235752|gb|EGA19834.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240066|gb|EGA24112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242601|gb|EGA26623.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249691|gb|EGA33598.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252574|gb|EGA36415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256932|gb|EGA40644.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262045|gb|EGA45609.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323263949|gb|EGA47463.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268438|gb|EGA51908.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 465

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKDSGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|163794789|ref|ZP_02188759.1| sensor histidine kinase [alpha proteobacterium BAL199]
 gi|159180062|gb|EDP64587.1| sensor histidine kinase [alpha proteobacterium BAL199]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 23  PSIAIKELIENSLDAESS-------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            + A+  L++N     ++       RVE  +A G      + D+G G+  E+   A+QR 
Sbjct: 349 LAQAVSNLVDN-----ATKYARQHVRVEVSLADGSVK-VSVVDDGPGIPEEDRERAIQRF 402


>gi|42520018|ref|NP_965933.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
          melanogaster]
 gi|42409755|gb|AAS13867.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
          melanogaster]
          Length = 795

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 40 VYEVVDNAIDESLAGYCDKIEVSINKDG--SVSVTDNGRGIPTD 81


>gi|77460678|ref|YP_350185.1| periplasmic sensor Signal transduction histidine kinase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384681|gb|ABA76194.1| putative two-component system, sensor histidine kinase protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 586

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA--E--SSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA       R+E  +          + DNG G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMQGKPCKRLEIRLDADEQLWRLSVIDNGGGIADEHLGQVFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|284008571|emb|CBA75135.1| DNA topoisomerase IV subunit B [Arsenophonus nasoniae]
          Length = 631

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 25/191 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM  +          E
Sbjct: 32  RPNHLAQEVIDNSVDEALAGYAKRIDVILYED--QSLEVIDDGRGMPVDIHPEKKVPAVE 89

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
           + +  Q H   K S+      + G  G  +  + A+S  + +                 +
Sbjct: 90  LIL-GQLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRIEVTVSRDSQIYRIAFENGEK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                   +    T       +       +F  + +   + +  V++  A+  P V   F
Sbjct: 148 VQELEVIGSCAKRTTGTGVRFW----PDSHFFDNPRFSISRLVHVLKAKAVLCPGVEIIF 203

Query: 185 TFSTIKSNRYK 195
                 + +  
Sbjct: 204 KDKINNTEQTW 214


>gi|251771682|gb|EES52257.1| DNA gyrase, B subunit [Leptospirillum ferrodiazotrophum]
          Length = 810

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          I+     + EL++NS+D   A   + +E ++         + DNG G+ 
Sbjct: 36 IDGLHHLVYELVDNSVDESLAGYCTAIEVILHSD--RSVTVKDNGRGIP 82


>gi|167578438|ref|ZP_02371312.1| sensor histidine kinase [Burkholderia thailandensis TXDOH]
          Length = 504

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   +   G  +  ++ D+G G+  +E     +R   S
Sbjct: 365 LIDNAIRYAGD-GA-VITVRVAREGDVARLEVIDDGPGIAPDERDAVFERFYRS 416


>gi|150024625|ref|YP_001295451.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86]
 gi|149771166|emb|CAL42633.1| DNA gyrase B subunit [Flavobacterium psychrophilum JIP02/86]
          Length = 647

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D A       +   I   G     + DNG G+ 
Sbjct: 44 VYEVVDNSIDEAMGGHCDTIRVDINEDG--SISVEDNGRGIP 83


>gi|308047726|ref|YP_003911292.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799]
 gi|307629916|gb|ADN74218.1| DNA gyrase subunit B [Ferrimonas balearica DSM 9799]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 74/248 (29%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I   G     + D+G G+      EE   A Q      H
Sbjct: 43  EVVDNSIDEALAGHCSDIVVTIHADG--SVSVQDDGRGIPVDMHPEEGVSAAQVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIA-ISGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  R   +    + +            
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSDKLELTVRRQGHIHEQEYSLGDPVAPLKAVG 159

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
                GT +         P+   F  +     +++   +R ++     VS      +  +
Sbjct: 160 DTDKTGTTIRF------WPSSQIFSDTT-FHYDILAKRLRELSFLNSGVSIRLVDERDAK 212

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
                    G     +  +       +    +         G      +N G     Y F
Sbjct: 213 ED--HYCYEGGIHAFVEFLNQNKTPVHQQVFHFTIEREDGIGVEVAMQWNDGFQENIYCF 270

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 271 TNNIPQRD 278


>gi|294155877|ref|YP_003560261.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145]
 gi|291599921|gb|ADE19417.1| DNA gyrase, B subunit [Mycoplasma crocodyli MP145]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  I         + DNG G+ 
Sbjct: 43 EIVDNSVDEAMAGFANIIQITITDD--DRIIVEDNGRGIP 80


>gi|260753072|ref|YP_003225965.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis
          NCIMB 11163]
 gi|258552435|gb|ACV75381.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
          NCIMB 11163]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++R+E  +  G      ITDNG G+  +
Sbjct: 53 EVLDNAMDEAVAGHATRIEVTLDTG--DRLTITDNGRGIPID 92


>gi|242072598|ref|XP_002446235.1| hypothetical protein SORBIDRAFT_06g007940 [Sorghum bicolor]
 gi|241937418|gb|EES10563.1| hypothetical protein SORBIDRAFT_06g007940 [Sorghum bicolor]
          Length = 792

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 29  ELIENSLDA---ESSRVETVIAGG--GKS-----FFQITDNGFGMTSEEIPMAVQRHCT- 77
           EL++NSLD     ++ V   +     G          + D+G GM  +++   +    + 
Sbjct: 155 ELLDNSLDEVINGATYVNIDVLENDKGIDKEKSRMLLVEDDGGGMDPDKMRQCMSLGYSV 214

Query: 78  -SKISDDFSNIHTFG 91
            SK++     I  +G
Sbjct: 215 KSKVAS---TIGQYG 226


>gi|241760961|ref|ZP_04759050.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
          ATCC 10988]
 gi|241374580|gb|EER64041.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
          ATCC 10988]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++R+E  +  G      ITDNG G+  +
Sbjct: 53 EVLDNAMDEAVAGHATRIEVTLDTG--DRLTITDNGRGIPID 92


>gi|291457142|ref|ZP_06596532.1| sensor histidine kinase/phosphatase of two-component system
           [Bifidobacterium breve DSM 20213]
 gi|291380977|gb|EFE88495.1| sensor histidine kinase/phosphatase of two-component system
           [Bifidobacterium breve DSM 20213]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+  + +    +R  
Sbjct: 315 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPEKSLDRVFERFY 369


>gi|259490547|ref|NP_001159313.1| hypothetical protein LOC100304405 [Zea mays]
 gi|223943339|gb|ACN25753.1| unknown [Zea mays]
          Length = 798

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 29  ELIENSLDA---ESSRVETVIAGGGKS-------FFQITDNGFGMTSEEIPMAVQRHCT- 77
           EL++NSLD     ++ V   +    K           + D+G GM  +++   +    + 
Sbjct: 161 ELLDNSLDEVINGATYVNIDVLENDKDIDKKKSRMLLVEDDGGGMDPDKMRQCMSLGYSA 220

Query: 78  -SKISDDFSNIHTFG 91
            SK++     I  +G
Sbjct: 221 KSKVAS---TIGQYG 232


>gi|217978065|ref|YP_002362212.1| DNA gyrase, B subunit [Methylocella silvestris BL2]
 gi|217503441|gb|ACK50850.1| DNA gyrase, B subunit [Methylocella silvestris BL2]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV   +   G     +TD+G G+ ++
Sbjct: 55 VYEVVDNAIDEALAGHATRVTVTLNADG--SVAVTDDGRGIPTD 96


>gi|209966328|ref|YP_002299243.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW]
 gi|209959794|gb|ACJ00431.1| DNA gyrase, B subunit, putative [Rhodospirillum centenum SW]
          Length = 876

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  + RVE  +   G     + DNG G+  +
Sbjct: 53 VYEVVDNAIDEALAGYADRVEVTLNADG--SVTVRDNGRGIPVD 94


>gi|182680203|ref|YP_001834349.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182636086|gb|ACB96860.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 674

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 21  ERPSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E   I +  LI+N+    + +V     A        I D+G G++        +   T
Sbjct: 432 ENLHIILSHLIDNATHHGAKKVTVEAFADKEILQITIKDDGSGISPNNATKIFEPFFT 489


>gi|159185681|ref|NP_357308.2| two component sensor kinase for C4-dicarboxylate transport
           [Agrobacterium tumefaciens str. C58]
 gi|159140815|gb|AAK90093.2| two component sensor kinase for C4-dicarboxylate transport
           [Agrobacterium tumefaciens str. C58]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 16/80 (20%)

Query: 30  LIENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK----- 79
           L++N+L+A  +    RVE  +   G      ++DNG G+             TSK     
Sbjct: 366 LLQNALEATETIETARVEVRVREEGDMVVISVSDNGAGIPEAIRAQLFSPFNTSKESGLG 425

Query: 80  ----ISDDFSNIHTFGFRGE 95
               IS+D ++   +G R E
Sbjct: 426 LGLVISNDIAS--DYGGRIE 443


>gi|58039710|ref|YP_191674.1| DNA topoisomerase IV subunit B [Gluconobacter oxydans 621H]
 gi|58002124|gb|AAW61018.1| DNA topoisomerase I [Gluconobacter oxydans 621H]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A  ++ ++  +   G     + DNG G+ ++
Sbjct: 63  EILDNAMDEAVAGHATTIDVRLE--GPRTLMVRDNGRGIPTD 102


>gi|56551307|ref|YP_162146.1| DNA topoisomerase IV subunit B [Zymomonas mobilis subsp. mobilis
          ZM4]
 gi|56542881|gb|AAV89035.1| DNA topoisomerase IV, B subunit [Zymomonas mobilis subsp. mobilis
          ZM4]
          Length = 660

 Score = 44.7 bits (104), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++R+E  +  G      ITDNG G+  +
Sbjct: 53 EVLDNAMDEAVAGHATRIEVTLDTG--DRLTITDNGRGIPID 92


>gi|329956512|ref|ZP_08297109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328524409|gb|EGF51479.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 662

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 70/256 (27%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 59  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVNIE 117

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 118 EN--LRVSVRDYGRGIPQGKLVEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 173

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S                +    +      GT +                 +
Sbjct: 174 ----RFEVRSYRDGKVRAVIFEKGVLQSDITQDSTEENGTYIFFE-------PDNTLFLN 222

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
              +   +  ++R        ++F         +     +   +        I  + GED
Sbjct: 223 YSFQNQFVETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMTSEGLYDIVHLKGED 282

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 283 IEIAFTHTNQYGEEYY 298


>gi|327539844|gb|EGF26447.1| two-component system sensor protein [Rhodopirellula baltica WH47]
          Length = 448

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 30  LIENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++ A    V+  +    ++     ++DNG G+         +   TSK
Sbjct: 349 LIHNAIQAG-DEVDVSLQQLSENTLRVTVSDNGAGIPEAVAANLFEPFVTSK 399


>gi|269799054|gb|ACZ43805.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 656

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 26/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   + V   I   G     ++D+G G+  +          E+ + V  
Sbjct: 43  EVVDNSIDEALAGHCTDVVVTIHEDG--SVSVSDDGRGIPVDIHEEEGVSAAEVILTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L     ++    Q      +  +   
Sbjct: 100 HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELT--IHRHGHIHQQIYRHGEPQAPIA 156

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           V  +  T       +           +     +++   +R ++     VS      +   
Sbjct: 157 VIGDIDTTGTELRFW----PSHETFTNTLFHYDILAKRLRELSFLNSGVSIKL-IDERED 211

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K +     G     +  +       N    +                +N G     Y F
Sbjct: 212 GKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCF 271

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 272 TNNIPQRD 279


>gi|269799052|gb|ACZ43804.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 700

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 26/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   + V   I   G     ++D+G G+  +          E+ + V  
Sbjct: 43  EVVDNSIDEALAGHCTDVVVTIHEDG--SVSVSDDGRGIPVDIHEEEGVSAAEVILTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L     ++    Q      +  +   
Sbjct: 100 HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELT--IHRHGHIHQQIYRHGEPQAPIA 156

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           V  +  T       +           +     +++   +R ++     VS      +   
Sbjct: 157 VIGDIDTTGTELRFW----PSHETFTNTLFHYDILAKRLRELSFLNSGVSIKL-IDERED 211

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K +     G     +  +       N    +                +N G     Y F
Sbjct: 212 GKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCF 271

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 272 TNNIPQRD 279


>gi|269799050|gb|ACZ43803.1| DNA gyrase subunit B [Moritella viscosa]
          Length = 726

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 26/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   + V   I   G     ++D+G G+  +          E+ + V  
Sbjct: 43  EVVDNSIDEALAGHCTDVVVTIHEDG--SVSVSDDGRGIPVDIHEEEGVSAAEVILTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L     ++    Q      +  +   
Sbjct: 100 HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELT--IHRHGHIHQQIYRHGEPQAPIA 156

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           V  +  T       +           +     +++   +R ++     VS      +   
Sbjct: 157 VIGDIDTTGTELRFW----PSHETFTNTLFHYDILAKRLRELSFLNSGVSIKL-IDERED 211

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K +     G     +  +       N    +                +N G     Y F
Sbjct: 212 GKSDHFVYEGGIKAFVDYLNVNKTPINKDAFHFSVEREDGITVEVAMQWNDGFQEGIYCF 271

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 272 TNNIPQRD 279


>gi|260469836|ref|ZP_05813988.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259028389|gb|EEW29713.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 533

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 9   KIINQIAAGEIIERPSIAIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTS 65
            +  +I+A    E  +I +  LI+NS  A   +++V  +  + GGK+   + D+G G++ 
Sbjct: 424 DLALRISA----ENAAIVLGNLIDNS--ARHGATQVSIIAASAGGKATVLVGDDGAGISP 477

Query: 66  EEIPMAVQRHCT 77
                  +   T
Sbjct: 478 SNRARIFEPFFT 489


>gi|225572725|ref|ZP_03781480.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039898|gb|EEG50144.1| hypothetical protein RUMHYD_00914 [Blautia hydrogenotrophica DSM
          10507]
          Length = 641

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   S +  V+   G     ++DNG G+  +
Sbjct: 43 EIVDNAVDEHLAGYCSHIRVVLEKDG--SCTVSDNGRGIPVD 82


>gi|219130173|ref|XP_002185246.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403425|gb|EEC43378.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 668

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 46/99 (46%)

Query: 24  SIAIKELIENSLDAESS--------------------RVETVIAG-----------GGKS 52
           +  IKE+++N++DA  +                    RV  VI              GK+
Sbjct: 42  AQIIKEIVDNAVDA-CTEDDNINRRKVPNEEKMTRIKRVRVVIERFETEAERDTDCSGKA 100

Query: 53  ------------FFQITDNGFGMTSEEIPMAVQRHCTSK 79
                          ++DNG GM  ++I   V    TSK
Sbjct: 101 DKTGSNSSDEVLRVTVSDNGCGM--KDIQACVDPFHTSK 137


>gi|260904977|ref|ZP_05913299.1| DNA gyrase subunit B [Brevibacterium linens BL2]
          Length = 665

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          ++E+++NS+D   A   S +E  I A GG    ++ D+G GM 
Sbjct: 43 VQEIVDNSVDEAMAGYCSHIEVTILADGG---VRVVDDGRGMP 82


>gi|83746891|ref|ZP_00943938.1| C4-dicarboxylate transport sensor protein dctB [Ralstonia
           solanacearum UW551]
 gi|207742174|ref|YP_002258566.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|83726476|gb|EAP73607.1| C4-dicarboxylate transport sensor protein dctB [Ralstonia
           solanacearum UW551]
 gi|206593562|emb|CAQ60489.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 665

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAES-------SRVETVIAGG-GKS---FFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+LDA +        R++  I    G        + DNG G+++E +P   +   T+
Sbjct: 554 LIGNALDAIAANDLSHPGRIDIDIGPADGVPAQLCIVVRDNGPGISAEAMPHLFEPFFTT 613

Query: 79  K 79
           K
Sbjct: 614 K 614


>gi|309972507|gb|ADO95708.1| Hypothetical protein R2846_0246 [Haemophilus influenzae R2846]
          Length = 761

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E + + + AI EL++N+ DA+++ +  +      +   I DNG GMT +
Sbjct: 19 ENVSKLNGAIIELVKNTYDADAT-ICVLYYEKTTNSLYIADNGCGMTKD 66


>gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 459

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 20  IERPSIAIKELIENSLD---AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQ 73
           I+R    +  L++N++    A        +  G   G +F  + DNG G+  EE+    +
Sbjct: 348 IDRLKQVLTNLVDNAISHSYAGG---MVAVELGLREGFAFIAVKDNGPGIPQEELENIWE 404

Query: 74  RHC 76
           R  
Sbjct: 405 RFY 407


>gi|302384743|ref|YP_003820565.1| ATP-binding region ATPase domain protein [Clostridium
          saccharolyticum WM1]
 gi|302195371|gb|ADL02942.1| ATP-binding region ATPase domain protein [Clostridium
          saccharolyticum WM1]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 8  EKIINQIAAG------EIIERPSIAIKELIENSLDAESSR---VETVIAGGGKSFFQITD 58
           +I   I AG        ++ P IA+ EL++N+ D+  ++   +   I         ITD
Sbjct: 2  PEIQANIQAGKYEDVLAAVQSPVIALTELVKNASDSCLNKHDPIIINI-NTQNKVITITD 60

Query: 59 NGFGMTSEEIPMAVQRHCTSK 79
          +G G++  E+    +   +SK
Sbjct: 61 SGEGLSKNELEHLGEAGYSSK 81


>gi|316932500|ref|YP_004107482.1| osmosensitive K channel signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315600214|gb|ADU42749.1| osmosensitive K channel signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 896

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 31  IENSLD--AESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + N+L   A +SRV     ++       +ITD+G G+   ++PM  +R  
Sbjct: 789 VNNALQHTAPASRVTIDATLSSATVDL-RITDDGVGIDPADLPMLFERFT 837


>gi|225574210|ref|ZP_03782820.1| hypothetical protein RUMHYD_02274 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038578|gb|EEG48824.1| hypothetical protein RUMHYD_02274 [Blautia hydrogenotrophica DSM
           10507]
          Length = 506

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 8/46 (17%)

Query: 41  RVETV-IAGGGKSFFQITDNGFGMTSEEIPMA---VQR----HCTS 78
           ++E    +  G+   Q+ DNG G+  E + +    ++R    H TS
Sbjct: 421 KIEIRAYSEAGQCLIQVKDNGCGIPKETMKLLRDKIERGNEPHGTS 466


>gi|241661815|ref|YP_002980175.1| histidine kinase [Ralstonia pickettii 12D]
 gi|240863842|gb|ACS61503.1| histidine kinase [Ralstonia pickettii 12D]
          Length = 670

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 30  LIENSLDA-------ESSRVETVI---AGGGKSF--FQITDNGFGMTSEEIPMAVQRHCT 77
           LI N+LDA        + R++  I    G   +     + DNG G+  + +P   +   T
Sbjct: 558 LIGNALDAISANEPARAGRIDITIGPIEGAPSNQLTIAVRDNGPGIQPDAMPHLFEPFFT 617

Query: 78  SK 79
           +K
Sbjct: 618 TK 619


>gi|158521787|ref|YP_001529657.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510613|gb|ABW67580.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 519

 Score = 44.7 bits (104), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 15/74 (20%)

Query: 21  ERPSIAIKELIENSLDAESS-------RVETVIAG------GGKSFFQ--ITDNGFGMTS 65
           +R       L+ N+ DA +S       R+             G    +  + DNG G+ +
Sbjct: 393 DRLRQVFVNLVINAADALASVSDQQEGRITITTKNHCPDAGNGPEMVEASVIDNGPGIAA 452

Query: 66  EEIPMAVQRHCTSK 79
            ++ +      T+K
Sbjct: 453 PDLDLVFDPFYTTK 466


>gi|332711757|ref|ZP_08431688.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
 gi|332349735|gb|EGJ29344.1| DNA gyrase subunit A [Lyngbya majuscula 3L]
          Length = 867

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSIDEALAGYCTHIEVDINSDG--SVTVTDDGRGVPTD 80


>gi|294790964|ref|ZP_06756122.1| DNA gyrase subunit B [Scardovia inopinata F0304]
 gi|294458861|gb|EFG27214.1| DNA gyrase subunit B [Scardovia inopinata F0304]
          Length = 772

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + S +   +   G     + DNG G+  +
Sbjct: 47 EIIDNSVDEALAGACSHIVVTLHKDG--SITVADNGRGIPVD 86


>gi|265752075|ref|ZP_06087868.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236867|gb|EEZ22337.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 477

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 13  QIAAGEIIERP---SIAIKELIENSLDAESSRVETV---IAGGGKSFFQITDNGFGMTSE 66
           ++ +  +I  P   +  I  LIEN++      V      I  G     QITDNG G+   
Sbjct: 359 KMESTLVIADPVHIANIISNLIENAIKYSGKEVRIDLSCIQKGHTLTIQITDNGIGIPPA 418

Query: 67  EIPMAVQRHC 76
           E      +  
Sbjct: 419 EQSKVFDKFY 428


>gi|257461146|ref|ZP_05626244.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268]
 gi|257441520|gb|EEV16665.1| DNA gyrase, B subunit [Campylobacter gracilis RM3268]
          Length = 770

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 13/56 (23%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          E+++NS+D   A     ++  I   G     ++DNG G+  +        H T KI
Sbjct: 41 EVVDNSIDEAMAGYCDTIDVEITSEG--SCIVSDNGRGIPVD-------IHPTEKI 87


>gi|229846421|ref|ZP_04466529.1| Histidine Kinase [Haemophilus influenzae 7P49H1]
 gi|229810514|gb|EEP46232.1| Histidine Kinase [Haemophilus influenzae 7P49H1]
          Length = 761

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E + + + AI EL++N+ DA+++ +  +      +   I DNG GMT +
Sbjct: 19 ENVSKLNGAIIELVKNTYDADAT-ICVLYYEKTTNSLYIADNGCGMTKD 66


>gi|225377589|ref|ZP_03754810.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans
          DSM 16841]
 gi|225210565|gb|EEG92919.1| hypothetical protein ROSEINA2194_03239 [Roseburia inulinivorans
          DSM 16841]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + D+G G+  +
Sbjct: 41 VYEIVDNSVDEALAGYCKNIEVTINED--NSITVEDDGRGIPVD 82


>gi|163856283|ref|YP_001630581.1| DNA topoisomerase IV subunit B [Bordetella petrii DSM 12804]
 gi|163260011|emb|CAP42312.1| topoisomerase IV subunit B [Bordetella petrii]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           E P   ++E+I+N+ D   A    +++  +   G     + D+G G+      EE    +
Sbjct: 58  ENPLHVVQEVIDNAADEALAGYGKQIQVTLHADG--SVSVEDDGRGIPVGLHPEEKAPVV 115

Query: 69  PMAVQR-HC 76
            +   R H 
Sbjct: 116 ELVFTRLHA 124


>gi|149917886|ref|ZP_01906381.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis
            pacifica SIR-1]
 gi|149821406|gb|EDM80808.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis
            pacifica SIR-1]
          Length = 1891

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 11/61 (18%)

Query: 30   LIENSLDA--------ES-SRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            LI N+ DA         +   +E  +          ++ DNG G+  E +P       T+
Sbjct: 1782 LITNARDALNSADTGEGAPKAIEVRVTSERPNWLTIRVEDNGPGIPPEVLPRIFDPFYTT 1841

Query: 79   K 79
            K
Sbjct: 1842 K 1842


>gi|148825385|ref|YP_001290138.1| histidine kinase [Haemophilus influenzae PittEE]
 gi|148715545|gb|ABQ97755.1| Histidine Kinase [Haemophilus influenzae PittEE]
          Length = 761

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E + + + AI EL++N+ DA+++ +  +      +   I DNG GMT +
Sbjct: 19 ENVSKLNGAIIELVKNTYDADAT-ICVLYYEKTTNSLYIADNGCGMTKD 66


>gi|32476758|ref|NP_869752.1| nitrogen regulation protein ntrB [Rhodopirellula baltica SH 1]
 gi|32447304|emb|CAD77130.1| probable nitrogen regulation protein ntrB [Rhodopirellula baltica
           SH 1]
          Length = 493

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 30  LIENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++ A    V+  +    ++     ++DNG G+         +   TSK
Sbjct: 394 LIHNAIQAG-DEVDVSLQQLSENTLRVTVSDNGAGIPEAVAANLFEPFVTSK 444


>gi|304383905|ref|ZP_07366362.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
 gi|304334983|gb|EFM01256.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella marshii
           DSM 16973]
          Length = 643

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R++  I         + D G G+   ++  AV    T  K 
Sbjct: 48  LKEVIDNSIDEFKMHAG-KRIDIDIDDN--LRVTVRDYGRGIPQGKLIEAVSMLNTGGKY 104

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
                   + G  G  L ++ A+S    + S        A          +  P     G
Sbjct: 105 DSKAFK-KSVGLNGVGLKAVNALSTRFEVRSYRDSQVRTAIFERGQLITDTTTPSDDESG 163

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQ 199
           T+V                 + +   +++ D++R        ++        N  ++  +
Sbjct: 164 TLVAFT-------PDNTMFLNYRFHDDIVEDMLRNYTYLNTGLAIIC-----NGRRILSR 211

Query: 200 STNGNFPERISQVIG----EDFINNAVELNEKSNEITLQGYTG--IPTFNRGNANQFYVF 253
           +   +  +      G         + +E+         + Y                  F
Sbjct: 212 NGLEDLLQDTMTNDGLYPIVHLAADDIEIAFTHANQYGEEYHSFVNGQHTTQGGTHQSAF 271

Query: 254 ING 256
              
Sbjct: 272 KEH 274


>gi|237508936|ref|ZP_04521651.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|235001141|gb|EEP50565.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
          Length = 503

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR----HCT 77
           LI+N++    D  +  +   +   G  +  ++ D+G G+   E     +R    H T
Sbjct: 365 LIDNAIRYAGD-GA-VITVRVAREGALARLEVIDDGPGIAPGERDAVFERFYRSHAT 419


>gi|229588675|ref|YP_002870794.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360541|emb|CAY47398.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S+         GK   Q+ DNG G+  E  
Sbjct: 520 TRLEQILVNLIGNALDAMQAQPAPELWLEGST---VD----GKYRLQVRDNGHGIDPEAR 572

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 573 KHLFEPFFTTK 583


>gi|221196553|ref|ZP_03569600.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
 gi|221203222|ref|ZP_03576241.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221177156|gb|EEE09584.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221183107|gb|EEE15507.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
          Length = 473

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   +   G  +   + DNG G+  +E     +R  
Sbjct: 368 LIDNAIRYAGDRAVITVRVSREGQCARLDVIDNGPGIPEDERDAVFERFH 417


>gi|167922114|ref|ZP_02509205.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           BCC215]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR----HCT 77
           LI+N++    D  +  +   +   G  +  ++ D+G G+   E     +R    H T
Sbjct: 363 LIDNAIRYAGD-GA-VITVRVAREGALARLEVIDDGPGIAPGERDAVFERFYRSHAT 417


>gi|163749893|ref|ZP_02157138.1| sensor histidine kinase [Shewanella benthica KT99]
 gi|161330407|gb|EDQ01386.1| sensor histidine kinase [Shewanella benthica KT99]
          Length = 439

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L++N++    D  ++     I   G+   QI DNG G+  E      +R
Sbjct: 350 LVDNAIKYAGD-GAT---IEIVQAGRE-IQIRDNGPGIPDEAKDKVFER 393


>gi|159906052|ref|YP_001549714.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis C6]
 gi|159887545|gb|ABX02482.1| DNA topoisomerase VI, B subunit [Methanococcus maripaludis C6]
          Length = 664

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR-HC 76
             + EL+ NSLDA  ES     +   I   G       I DNG G+  E +P    +   
Sbjct: 44  TIVHELVTNSLDACEESEILPEISVEIKKIGSETFGVNIEDNGPGIPPEFVPKVFGKMLA 103

Query: 77  TSKIS 81
            SK+ 
Sbjct: 104 GSKLH 108


>gi|53721735|ref|YP_110720.1| sensor kinase protein [Burkholderia pseudomallei K96243]
 gi|52212149|emb|CAH38166.1| sensor kinase protein [Burkholderia pseudomallei K96243]
          Length = 499

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR----HCT 77
           LI+N++    D  +  +   +   G  +  ++ D+G G+   E     +R    H T
Sbjct: 361 LIDNAIRYAGD-GA-VITVRVAREGALARLEVIDDGPGIAPGERDAVFERFYRSHAT 415


>gi|254254581|ref|ZP_04947898.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124899226|gb|EAY71069.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 440

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAAPDGGAIISVRDRGPGIPGDQLDAVFEPF 387


>gi|126442825|ref|YP_001062037.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           668]
 gi|126222316|gb|ABN85821.1| signal transduction histidine kinase [Burkholderia pseudomallei
           668]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR----HCT 77
           LI+N++    D  +  +   +   G  +  ++ D+G G+   E     +R    H T
Sbjct: 363 LIDNAIRYAGD-GA-VITVRVAREGALARLEVIDDGPGIAPGERDAVFERFYRSHAT 417


>gi|53716766|ref|YP_105783.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
 gi|67640648|ref|ZP_00439447.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|76819540|ref|YP_337429.1| sensor histidine kinase [Burkholderia pseudomallei 1710b]
 gi|124381143|ref|YP_001023941.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126447126|ref|YP_001078684.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|126456245|ref|YP_001074989.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|134279337|ref|ZP_01766050.1| sensor histidine kinase [Burkholderia pseudomallei 305]
 gi|166999273|ref|ZP_02265114.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|167722922|ref|ZP_02406158.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           DM98]
 gi|167741902|ref|ZP_02414676.1| Signal transduction histidine kinase [Burkholderia pseudomallei 14]
 gi|167819083|ref|ZP_02450763.1| Signal transduction histidine kinase [Burkholderia pseudomallei 91]
 gi|167827468|ref|ZP_02458939.1| Signal transduction histidine kinase [Burkholderia pseudomallei 9]
 gi|167848937|ref|ZP_02474445.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           B7210]
 gi|167897543|ref|ZP_02484945.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           7894]
 gi|167905896|ref|ZP_02493101.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           NCTC 13177]
 gi|167914203|ref|ZP_02501294.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           112]
 gi|217419018|ref|ZP_03450525.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|226195096|ref|ZP_03790687.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|242313740|ref|ZP_04812757.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|254179216|ref|ZP_04885868.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254183074|ref|ZP_04889666.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|254189738|ref|ZP_04896247.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|254193122|ref|ZP_04899557.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|254200596|ref|ZP_04906961.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|254204617|ref|ZP_04910970.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|254262929|ref|ZP_04953794.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
 gi|254300011|ref|ZP_04967457.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|254356589|ref|ZP_04972864.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|52422736|gb|AAU46306.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
 gi|76584013|gb|ABA53487.1| sensor histidine kinase [Burkholderia pseudomallei 1710b]
 gi|124289163|gb|ABM98432.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126230013|gb|ABN93426.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|126239980|gb|ABO03092.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|134249756|gb|EBA49837.1| sensor histidine kinase [Burkholderia pseudomallei 305]
 gi|147748208|gb|EDK55283.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|147754203|gb|EDK61267.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|148025616|gb|EDK83739.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|157810377|gb|EDO87547.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|157937415|gb|EDO93085.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|160694543|gb|EDP84553.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|169649876|gb|EDS82569.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|184213607|gb|EDU10650.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|217398322|gb|EEC38337.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|225932901|gb|EEH28897.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|238521411|gb|EEP84863.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|242136979|gb|EES23382.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|243064583|gb|EES46769.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|254213931|gb|EET03316.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 501

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR----HCT 77
           LI+N++    D  +  +   +   G  +  ++ D+G G+   E     +R    H T
Sbjct: 363 LIDNAIRYAGD-GA-VITVRVAREGALARLEVIDDGPGIAPGERDAVFERFYRSHAT 417


>gi|332290088|ref|YP_004420940.1| DNA topoisomerase IV subunit B [Gallibacterium anatis UMN179]
 gi|330432984|gb|AEC18043.1| DNA topoisomerase IV subunit B [Gallibacterium anatis UMN179]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 31 TRPNHLGQEVIDNSVDEALAGYATKIEVILYQD--QSLEVIDNGRGMPVD 78


>gi|329888731|ref|ZP_08267329.1| sensor protein chvG [Brevundimonas diminuta ATCC 11568]
 gi|328847287|gb|EGF96849.1| sensor protein chvG [Brevundimonas diminuta ATCC 11568]
          Length = 331

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTS 78
             ++ D+G G+ ++ +    +R  TS
Sbjct: 249 RVRVEDDGPGIPADNLETVFERFYTS 274


>gi|319654330|ref|ZP_08008418.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2]
 gi|317394030|gb|EFV74780.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2]
          Length = 552

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 31  IENSLDAESS--RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+++A S   +V   +    +     + DNG GM+ E +    +   +SK
Sbjct: 448 IKNAIEASSDGGKVTVTLQAEDRQLTILVKDNGCGMSEERLNRIGEPFYSSK 499


>gi|313109644|ref|ZP_07795589.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310882091|gb|EFQ40685.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 329 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSK 387


>gi|307295605|ref|ZP_07575441.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum
          L-1]
 gi|306878644|gb|EFN09864.1| DNA topoisomerase IV, B subunit [Sphingobium chlorophenolicum
          L-1]
          Length = 658

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++R+E ++  G  +   ITDNG G+  +
Sbjct: 52 EVLDNSMDEAVAGHATRIEVLLEPG--NRLTITDNGRGIPVD 91


>gi|300718429|ref|YP_003743232.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661]
 gi|299064265|emb|CAX61385.1| DNA topoisomerase IV subunit B [Erwinia billingiae Eb661]
          Length = 629

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHAKRVEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           +   R H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 90  LIFCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRNAEVYEMAFENGDKV 148

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           E +     V   N GT V            +NF  S +   + ++ +++  A+  P V  
Sbjct: 149 EDLHVTGTVGKRNTGTRVRFW-------PDVNFFDSPRFSVSRLSHLLKAKAVLCPGVEI 201

Query: 185 TFSTIKSNRYKMNFQS 200
            F    +N  +    +
Sbjct: 202 VFKDNVNNTEQTWCYA 217


>gi|297670400|ref|XP_002813359.1| PREDICTED: MORC family CW-type zinc finger protein 1-like isoform
          1 [Pongo abelii]
          Length = 985

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLRGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|296387252|ref|ZP_06876751.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSK 711


>gi|294012212|ref|YP_003545672.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
 gi|292675542|dbj|BAI97060.1| DNA gyrase subunit B [Sphingobium japonicum UT26S]
          Length = 658

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++R+E ++  G  +   ITDNG G+  +
Sbjct: 52 EVLDNSMDEAVAGHATRIEVLLEPG--NRLTITDNGRGIPVD 91


>gi|261415262|ref|YP_003248945.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|261371718|gb|ACX74463.1| DNA gyrase, B subunit [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +E  I  G  +  ++TDNG G+ ++
Sbjct: 51 EVVDNSVDEALAGFCNHIEISILPG--NGIRVTDNGRGIPTD 90


>gi|148906969|gb|ABR16629.1| unknown [Picea sitchensis]
          Length = 737

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 40/202 (19%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E+++N++D   A  ++ ++ +I   G     I D+G G+   ++     +   S +  
Sbjct: 130 VYEVLDNAIDEAQAGFATNIDVIIFLDG--SVSIMDDGRGI-PTDLHPVTHK---SALET 183

Query: 83  DFSNIHTFG-FRGEALPSIGAVS----------------HLTLMSRPPQNNT-----GAQ 120
             + +H  G F GE   S  +VS                 L +                +
Sbjct: 184 VLTVLHAGGKFGGE--SSGYSVSGGLHGVGLSVVNALSEKLEVTVWRDGKEWNQTFACGK 241

Query: 121 IAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                     +       GT V         P +  F  + + + N I    R +A   P
Sbjct: 242 PVTELTSNEILGEFKFRQGTRVRF------WPDKEVFTTTTEFDYNTIVGRARELAFLNP 295

Query: 181 KVSFTFSTIKSNRYKMNFQSTN 202
           +V  T      +   + +   +
Sbjct: 296 QVKITLKQENKDAENVTYNEYH 317


>gi|117618295|ref|YP_858204.1| DNA topoisomerase IV subunit B [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559702|gb|ABK36650.1| DNA topoisomerase IV, B subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 631

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 30/201 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +  +E  +        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHARTLEVTLYED--QSLEVIDDGRGMPVDIHPEEGVCGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R      +   +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSERVEVTVRRDGQVYDIAFEKGE 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             ++++        N GT V             ++  S +   + +  +++  A+  P +
Sbjct: 146 KVQELTITGTCGRRNTGTRVRFW-------PEAHYFDSPRFSVSKLEHLLKAKAVLCPGL 198

Query: 183 SFTFSTIKSNRYKMNFQSTNG 203
           +  F   K+   K+ +   +G
Sbjct: 199 TIKF-LDKNTGIKLEWCYEDG 218


>gi|107103714|ref|ZP_01367632.1| hypothetical protein PaerPA_01004785 [Pseudomonas aeruginosa PACS2]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSK 711


>gi|15599392|ref|NP_252886.1| BfiS [Pseudomonas aeruginosa PAO1]
 gi|9950408|gb|AAG07584.1|AE004836_3 BfiS [Pseudomonas aeruginosa PAO1]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSK 711


>gi|254237072|ref|ZP_04930395.1| hypothetical protein PACG_03109 [Pseudomonas aeruginosa C3719]
 gi|126169003|gb|EAZ54514.1| hypothetical protein PACG_03109 [Pseudomonas aeruginosa C3719]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSK 711


>gi|116052234|ref|YP_788922.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587455|gb|ABJ13470.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFHTSK 711


>gi|242052563|ref|XP_002455427.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
 gi|241927402|gb|EES00547.1| hypothetical protein SORBIDRAFT_03g010630 [Sorghum bicolor]
          Length = 729

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 92/253 (36%), Gaps = 35/253 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E+++N++D   A  +S+++ V+     +   +TDNG G+ ++  P       T K   
Sbjct: 124 VYEILDNAVDEGQAGHASKIDVVLHDD--NSVSVTDNGRGIPTDMHPQ------TKK--S 173

Query: 83  DFSNIHTF------------------GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
               + T                   G  G  L  + A+S    ++     N   Q    
Sbjct: 174 CVETVLTLMHAGGKFGGSKSGYSVSGGLHGVGLSVVNALSEALEVTVWRDGNKYRQSYSR 233

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           G+  + +  + +   T           P +  F  +   + N I+  IR +A   P+++ 
Sbjct: 234 GKPTTPLSSITLTGETSPRQGTSIRFWPDKDIFTTTIDFDFNTISSRIRELAFLNPELTI 293

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERI-SQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
           T +  + +  + N     G   E +      +  +++ +   ++ + IT+     +   +
Sbjct: 294 TLTKEEGHTVQHNEYCYAGGLVEYVKWLNTDKKPLHDPIAFRKELDGITVD--VSLQWSS 351

Query: 244 RGNANQFYVFING 256
              ++    + N 
Sbjct: 352 DSYSDTVLGYANS 364


>gi|160871558|ref|ZP_02061690.1| DNA gyrase, B subunit [Rickettsiella grylli]
 gi|159120357|gb|EDP45695.1| DNA gyrase, B subunit [Rickettsiella grylli]
          Length = 847

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A   S+++ ++   G     + DNG G+  +
Sbjct: 84  EVVDNSIDESLAGYCSQIDIILHSDG--SVTVKDNGRGIPVD 123


>gi|86747132|ref|YP_483628.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2]
 gi|86570160|gb|ABD04717.1| DNA gyrase subunit B [Rhodopseudomonas palustris HaA2]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ VE V+   G     + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATAVEVVLNADG--SVTVRDDGRGIPVD 96


>gi|56420367|ref|YP_147685.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|47076792|dbj|BAD18334.1| two-component sensor histidine kinase [Geobacillus kaustophilus]
 gi|56380209|dbj|BAD76117.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 23  PSIAIKE-------LI---ENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           P   I E       L+   +N+++A     + +V   I   G+   +I D G GMT E++
Sbjct: 304 PFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVSVSI-DSGRVLIRIADTGVGMTKEQL 362

Query: 69  PMAVQRHCTSK 79
               + + T+K
Sbjct: 363 ERLGEPYFTTK 373


>gi|91974486|ref|YP_567145.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5]
 gi|91680942|gb|ABE37244.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB5]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ VE V+   G     + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATAVEVVLNADG--SVTVRDDGRGIPVD 96


>gi|317968499|ref|ZP_07969889.1| DNA gyrase subunit B [Synechococcus sp. CB0205]
          Length = 653

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I   G     ++DNG G+ ++
Sbjct: 45 VYEVVDNSVDEALAGHCNEIRVAIEEDG--SCSVSDNGRGIPTD 86


>gi|297670402|ref|XP_002813360.1| PREDICTED: MORC family CW-type zinc finger protein 1-like isoform
          2 [Pongo abelii]
          Length = 964

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLRGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|296104690|ref|YP_003614836.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059149|gb|ADF63887.1| DNA topoisomerase IV subunit B [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 630

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 21/194 (10%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
                                +       +F  S +   + +T +++  A+  P V  TF
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLTHLLKAKAVLCPGVEITF 202

Query: 187 STIKSNRYKMNFQS 200
               +N  +    +
Sbjct: 203 KDNVNNTEQSWCYA 216


>gi|228955057|ref|ZP_04117072.1| Sensor histidine kinase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228804567|gb|EEM51171.1| Sensor histidine kinase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 392

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A        ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 300 LIKNAIEAMSVGGKITIKVTVKDG--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 351


>gi|270283844|ref|ZP_05965087.2| putative DNA gyrase subunit B [Bifidobacterium gallicum DSM
          20093]
 gi|270277550|gb|EFA23404.1| putative DNA gyrase subunit B [Bifidobacterium gallicum DSM
          20093]
          Length = 792

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A +   +   +   G    ++ DNG G+  +
Sbjct: 50 EIIDNSVDEALAGACDHITVTLHTDG--SIEVADNGRGIPVD 89


>gi|255547622|ref|XP_002514868.1| zinc finger protein, putative [Ricinus communis]
 gi|223545919|gb|EEF47422.1| zinc finger protein, putative [Ricinus communis]
          Length = 786

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 29  ELIENSLDA---ESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           EL++NSLD     ++ V   I    K       + DNG GM   ++   +    + K  +
Sbjct: 179 ELLDNSLDEYNNGATYVNVDILRNQKDGSVMLLVEDNGGGMDPHKMRGCMSFGYSDKSRE 238

Query: 83  DFSNIHTFG 91
              +I  +G
Sbjct: 239 A-DSIGEYG 246


>gi|49474885|ref|YP_032926.1| two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
 gi|49237690|emb|CAF26877.1| Two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
          Length = 594

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 13/76 (17%)

Query: 22  RPSIAIKELIENS---L--DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           R    I  LIEN+   +  D    ++   +     +    I DNG G+ SE I    +R 
Sbjct: 478 RLGQVISNLIENARSFIPHDNG--KICITMKSNAANLVLIIEDNGPGIRSENIERIFERF 535

Query: 76  CTSKISDDFSNIHTFG 91
            T + S+D     TFG
Sbjct: 536 YTDRPSED-----TFG 546


>gi|18147155|dbj|BAB83058.1| DNA gyrase subunit B [Alcanivorax sp. I4]
          Length = 467

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   S +  VI         I DNG G+  +          E+ + V  
Sbjct: 14  EVVDNSIDEALAGFCSEIRVVIHPD--ESVSIQDNGRGIPVDIHEEEGVSAAEVILTVL- 70

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVR 132
           H   K  D+   + + G  G  +  + A+S  L L  R               +K   V 
Sbjct: 71  HAGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYRHGVPDKPLEVV 129

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
               + GT V  R              + +   +++   +R ++     V       +S 
Sbjct: 130 GTTESSGTSVHFR-------PSSETFSNIKFHYDILAKRLRELSFLNSGVRIHLKDERSG 182

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             ++      G     +S +       N V   +   E           +N       + 
Sbjct: 183 EEEV--FEYEGGLSAFVSYLNVNKTPLNQVFHFQYDREEDGISVEVAMQWNDSYQENIFC 240

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 241 FTNNIPQRD 249


>gi|224023799|ref|ZP_03642165.1| hypothetical protein BACCOPRO_00515 [Bacteroides coprophilus DSM
           18228]
 gi|224017021|gb|EEF75033.1| hypothetical protein BACCOPRO_00515 [Bacteroides coprophilus DSM
           18228]
          Length = 414

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 30  LIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+L A +++++    I         +++NG  +++E          T+K
Sbjct: 324 LVKNALQAGATKIKITAEIDFAETIKIAVSNNGRPISAESQEEIFVPFYTTK 375


>gi|196249898|ref|ZP_03148594.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
 gi|196210774|gb|EDY05537.1| DNA gyrase, B subunit [Geobacillus sp. G11MC16]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I  G  +   I DNG G+  +
Sbjct: 47 EIVDNSIDEALAGYCTEIHVTI--GEDNSITIADNGRGIPVD 86


>gi|28209863|ref|NP_780807.1| DNA gyrase subunit B [Clostridium tetani E88]
 gi|28202298|gb|AAO34744.1| DNA gyrase subunit B [Clostridium tetani E88]
          Length = 637

 Score = 44.7 bits (104), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    +++  I     +   I DNG GM 
Sbjct: 43 VYEIVDNSIDEALAGYCDKIDIYINED--NSITIEDNGRGMP 82


>gi|329847542|ref|ZP_08262570.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19]
 gi|328842605|gb|EGF92174.1| DNA gyrase, B subunit [Asticcacaulis biprosthecum C19]
          Length = 823

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G     +TD+G G+  +
Sbjct: 55 VYEVVDNAIDEVLAGHATRVEVILNVDG--SCTVTDDGRGIPVD 96


>gi|295979547|dbj|BAJ07446.1| DNA gyrase subunit B [Asticcacaulis biprosthecium]
          Length = 323

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G     +TD+G G+  +
Sbjct: 12 VYEVVDNAIDEVLAGHATRVEVILNVDG--SCTVTDDGRGIPVD 53


>gi|238020581|ref|ZP_04601007.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC
          51147]
 gi|237867561|gb|EEP68567.1| hypothetical protein GCWU000324_00467 [Kingella oralis ATCC
          51147]
          Length = 662

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+  I+E+I+N+ D A    ++R+   I         + DNG G+ 
Sbjct: 32 DSPTHIIQEVIDNAADEALGGYATRISVEIHSD--QSITVRDNGRGIP 77


>gi|255530774|ref|YP_003091146.1| DNA gyrase subunit B [Pedobacter heparinus DSM 2366]
 gi|255343758|gb|ACU03084.1| DNA gyrase, B subunit [Pedobacter heparinus DSM 2366]
          Length = 652

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  +   I     +  ++ DNG G+ 
Sbjct: 45 VYEVVDNSIDEALAGHADTIYVNILKD--NSIRVEDNGRGIP 84


>gi|15616401|ref|NP_244706.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|21362444|sp|Q9RC53|CITS_BACHD RecName: Full=Sensor protein CitS
 gi|5822800|dbj|BAA83946.1| CITS [Bacillus halodurans]
 gi|10176464|dbj|BAB07558.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 538

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 30  LIENSLDA------ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           L+EN+ DA      E+ ++       G  F  ++ DNG G+  + +    +   ++K
Sbjct: 435 LLENAFDALLASGIENKKIYISFTDMGDDFIFEVEDNGPGIPPQLMESIFEEGFSTK 491


>gi|81681145|emb|CAJ34392.1| putative chaperone [Micromonospora sp. ML1]
          Length = 575

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 28/119 (23%)

Query: 22  RPSIAI-KELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           R +  + K+L   ++D     +   +    ++   + DNG GM+ +E+   +     S  
Sbjct: 48  RLASMVDKDL---AVDTGDLHIAIEVDRDARTL-TVRDNGIGMSRDEVVSVIGTIAKSGT 103

Query: 81  SDDFSNIHTFGFRGEALPSIGA----------------VS-HLTLMSRPPQNNTGAQIA 122
           ++    +       EA  +  +                V+  + L++R      G +  
Sbjct: 104 AELLRQLR------EAKDAGASQELIGQFGVGFYAAFMVAERVELVTRRAGETGGTRWE 156


>gi|293363557|ref|ZP_06610313.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
          alligatoris A21JP2]
 gi|292552906|gb|EFF41660.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
          alligatoris A21JP2]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +S++   I     +   + DNG G+ 
Sbjct: 43 EIVDNSVDECMAGFASKIFITITND--NRIIVEDNGRGIP 80


>gi|271963078|ref|YP_003337274.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270506253|gb|ACZ84531.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 464

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 30  LIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+NSL   +  V   +   G  +   + D+G G++ E +  A++R   S
Sbjct: 362 LIDNSLKFGAEEVTVHVEPAGDLAEIHVVDDGPGLSGEALTRALERFWRS 411


>gi|237738561|ref|ZP_04569042.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31]
 gi|229424044|gb|EEO39091.1| DNA gyrase subunit B [Fusobacterium sp. 2_1_31]
          Length = 639

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 29/207 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   ++++  I        ++ DNG G+ ++          EI + V  
Sbjct: 43  EIVDNSVDEALAGYCNKIDVKILPDNI--IEVVDNGRGIPTDIHPKYGKSALEIVLTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  +D   + + G  G  +  + A+S  L +  R   N    +      +      
Sbjct: 100 HAGGKFENDNYKV-SGGLHGVGVSVVNALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKII 158

Query: 134 VAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
            +      GT V  +       A  +  ++       +++ ++ +A     ++ T S ++
Sbjct: 159 GSCEASEHGTTVRFK-------ADGDIFETLVYNYFTLSNRLKELAYLNRGLTITLSDLR 211

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDF 217
            +  K      +G   + +++++ E+ 
Sbjct: 212 KDEKKEETYKFDGGILDFLNEIVKEET 238


>gi|209517280|ref|ZP_03266124.1| PAS sensor protein [Burkholderia sp. H160]
 gi|209502289|gb|EEA02301.1| PAS sensor protein [Burkholderia sp. H160]
          Length = 1790

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 15/82 (18%)

Query: 6    LSEKIINQIAAGEIIERPSIAIKELIENSLDAESS--------RVETVIAGGGKSFFQIT 57
            L     +++   ++I         LI N++DA S+         ++T +   G     + 
Sbjct: 1670 LPPIKGDRVQIQQVILN-------LIINAIDAMSAVDDRPRELTIDTAVIEPGVVRVAVR 1722

Query: 58   DNGFGMTSEEIPMAVQRHCTSK 79
            D+G G+  E I    +   T+K
Sbjct: 1723 DSGPGIAPENIERLFEPFYTTK 1744


>gi|138893684|ref|YP_001124137.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
 gi|134265197|gb|ABO65392.1| DNA gyrase subunit B [Geobacillus thermodenitrificans NG80-2]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I  G  +   I DNG G+  +
Sbjct: 47 EIVDNSIDEALAGYCTEIHVTI--GEDNSITIADNGRGIPVD 86


>gi|124516516|gb|EAY58024.1| DNA gyrase, B subunit [Leptospirillum rubarum]
 gi|206603407|gb|EDZ39887.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 818

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------S 65
           I+     + EL++NS+D   A   S +   I         + DNG G+           +
Sbjct: 38  IDGLHHLVYELVDNSVDEALAGHCSEIHITIHPD--RSVTVADNGRGIPTGMHAEQKRSA 95

Query: 66  EEIPMAVQRHCTSKISDDFSNIH 88
            E+ + V  H   K +++   + 
Sbjct: 96  AEVVLTVL-HAGGKFNNNLYKVS 117


>gi|59710619|ref|YP_203395.1| DNA gyrase subunit B [Vibrio fischeri ES114]
 gi|59478720|gb|AAW84507.1| DNA gyrase, subunit B [Vibrio fischeri ES114]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 70/247 (28%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--NSVSVSDDGRGIPTAIHPEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  + L     +     Q      +  +   V
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELT--IHRAGEIHQQVYHHGEPEAPLAV 156

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T       +           +      ++   +R ++     VS           
Sbjct: 157 IGKTDTTGTKIRFW----PSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQ-DMREED 211

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           K +     G     +  +       +    +  S             +N G     Y F 
Sbjct: 212 KADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|294651940|ref|ZP_06729229.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC
          19194]
 gi|292822172|gb|EFF81086.1| DNA topoisomerase IV subunit B [Acinetobacter haemolyticus ATCC
          19194]
          Length = 627

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  +++V   I   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHANQVTVTIYEDG--SLSVEDNGRGMPVD 76


>gi|284989341|ref|YP_003407895.1| ATPase [Geodermatophilus obscurus DSM 43160]
 gi|284062586|gb|ADB73524.1| ATPase [Geodermatophilus obscurus DSM 43160]
          Length = 520

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGGK--SFFQITDNGFGMTSEEI 68
           P  AI +L++NS+ A +  +       G   S+  + D+G GM+  ++
Sbjct: 43 SPEAAIADLLDNSIAAAAKNIHITCHWAGSRDSWVAVCDDGNGMSEPDL 91


>gi|302872928|ref|YP_003841561.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
 gi|307687881|ref|ZP_07630327.1| DNA gyrase subunit B [Clostridium cellulovorans 743B]
 gi|302575785|gb|ADL49797.1| DNA gyrase, B subunit [Clostridium cellulovorans 743B]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++ +I     +   + D+G GM 
Sbjct: 42 VYEIVDNSIDEALAGFCKNIDVIIHED--NSISVKDDGRGMP 81


>gi|238915981|ref|YP_002929498.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
 gi|238871341|gb|ACR71051.1| DNA gyrase subunit B [Eubacterium eligens ATCC 27750]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + +E +I     +   + DNG G+  +
Sbjct: 44 VYEIVDNAIDEALAGFCTHIEVMINKD--NSITVIDNGRGVPVD 85


>gi|190892279|ref|YP_001978821.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190697558|gb|ACE91643.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 426

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 26  AIKELIENSLDAESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ NS+D       +   ++  G     + D G G+ +E   +  +   
Sbjct: 354 AVSNLVRNSIDHGGGNGMITVSVSASGGGRIGVADEGPGIPAEHRELVFEPFY 406


>gi|172055029|ref|YP_001806356.1| hypothetical protein cce_4944 [Cyanothece sp. ATCC 51142]
 gi|171701310|gb|ACB54290.1| hypothetical protein cce_4944 [Cyanothece sp. ATCC 51142]
          Length = 551

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 23 PSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           +  + EL++N+  A++S +     I   G  F  I D+G G+  E++ +A+
Sbjct: 24 LNDILNELLQNARRAKASCIWIRTYIED-GMRFCSIMDDGEGIFKEDVRIAL 74


>gi|115381168|gb|ABI96233.1| DNA topoisomerase IV subunit B [Entomoplasma ellychniae]
          Length = 552

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 13/55 (23%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          E+++NS+D   A   + +  V+   G     ++DNG G+           H T K
Sbjct: 14 EIVDNSIDEALAGYCNEINVVLEKNG--SVTVSDNGRGVP-------TGMHATGK 59


>gi|147921702|ref|YP_684478.1| DNA topoisomerase VI subunit B [uncultured methanogenic archaeon
           RC-I]
 gi|110619874|emb|CAJ35152.1| type II DNA topoisomerase VI, subunit B [uncultured methanogenic
           archaeon RC-I]
          Length = 541

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 25  IAIKELIENSLDA--ESSR-----VETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
             IKE ++NSLDA  E+S      +             I DNG G+  + +P   
Sbjct: 47  TCIKEAVDNSLDACEEASILPDIYIRVRKVDDRLVSIIIEDNGPGIQKDVLPRVF 101


>gi|28412562|gb|AAO39047.1| coumermycin-resistant GyrB [synthetic construct]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 22/92 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR 74
           + E+++NS+D   A    R++ +I     +   + DNG G+      EE    + + + +
Sbjct: 37  VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTDIHEEEGISALELVLTK 94

Query: 75  -HCTSKISDDFSNIHTFGFRG------EALPS 99
            H   K   D   + + G  G       AL S
Sbjct: 95  LHSGGKFDKDTYKV-SGGLHGVGISVVNALSS 125


>gi|134300114|ref|YP_001113610.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134052814|gb|ABO50785.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 557

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 30  LIENSLDA-------ESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+ DA       +S  + T +    ++      + DNG G+  E +        TSK
Sbjct: 449 LLLNARDALEEIEGEKSIWISTTVESDQETQWVVLTVRDNGCGIHPEGLNKIFNPFYTSK 508


>gi|114565581|ref|YP_752735.1| DNA topoisomerase [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
 gi|114336516|gb|ABI67364.1| DNA gyrase subunit B [Syntrophomonas wolfei subsp. wolfei str.
          Goettingen]
          Length = 633

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    ++E  I     +   + D+G G+  +
Sbjct: 42 EIVDNSIDEAVAGFCKKIEVTINQD--NSITVCDDGRGIPVD 81


>gi|332300337|ref|YP_004442258.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707]
 gi|332177400|gb|AEE13090.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V   I     +  Q+TDNG G+  +
Sbjct: 52 VYEVVDNSIDEALAGYCTEVLVEILSD--NSIQVTDNGRGIPVD 93


>gi|313886470|ref|ZP_07820186.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924016|gb|EFR34809.1| DNA gyrase, B subunit [Porphyromonas asaccharolytica PR426713P-I]
          Length = 649

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V   I     +  Q+TDNG G+  +
Sbjct: 44 VYEVVDNSIDEALAGYCTEVLVEILSD--NSIQVTDNGRGIPVD 85


>gi|295132378|ref|YP_003583054.1| two-component system sensor histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294980393|gb|ADF50858.1| two-component system sensor histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 341

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           ER    I  L+ NS+    +  ++ +     I    K   ++TDNG G+    IP   +R
Sbjct: 217 ERIQQVITNLVVNSIKYGKEGGTTEISIENLIKN--KVIVRVTDNGEGIAKTNIPRLFER 274

Query: 75  HC 76
             
Sbjct: 275 FY 276


>gi|182419173|ref|ZP_02950427.1| sensor protein ResE [Clostridium butyricum 5521]
 gi|237669298|ref|ZP_04529280.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377128|gb|EDT74698.1| sensor protein ResE [Clostridium butyricum 5521]
 gi|237655185|gb|EEP52743.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 343

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IE  S  IK    N+ D   + + +              I DNG G+  E++    +R  
Sbjct: 239 IEAISNIIK----NAFDHTKKGNTIHIEWKQFASIIQIIIKDNGCGIHQEDLHHIFKRFY 294

Query: 77  TSKISDDFSNIH 88
            S+ S D   I 
Sbjct: 295 RSRFSKDTQGIG 306


>gi|192288437|ref|YP_001989042.1| DNA gyrase subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192282186|gb|ACE98566.1| DNA gyrase, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +SRVE ++   G     + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHASRVEVILNADG--SVTVRDDGRGIPVD 96


>gi|154500892|ref|ZP_02038930.1| hypothetical protein BACCAP_04577 [Bacteroides capillosus ATCC
           29799]
 gi|150270392|gb|EDM97718.1| hypothetical protein BACCAP_04577 [Bacteroides capillosus ATCC
           29799]
          Length = 491

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 26  AIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           A++ L+ N++DA   + E  ++        ++   ++DNG GM +E      + + T+K
Sbjct: 368 ALRNLLLNAVDAAGEKGEVTLSYCSLPNRRRAVITVSDNGCGMDAETAKYIFEPYYTTK 426


>gi|150390727|ref|YP_001320776.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Alkaliphilus metalliredigens QYMF]
 gi|149950589|gb|ABR49117.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Alkaliphilus metalliredigens QYMF]
          Length = 534

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 17/78 (21%)

Query: 30  LIENSLDAES------SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LIEN++DA S        ++  I    ++   ++ D G G+  ++ P    R  ++K   
Sbjct: 434 LIENAMDAVSNSREEDKTIDISIRESLENIRIEVKDVGVGIEEKDRPYIFDRGFSTKE-- 491

Query: 83  DFSNIHTFGFRGEALPSI 100
                   G RG  L  I
Sbjct: 492 --------GSRGIGLALI 501


>gi|39933084|ref|NP_945360.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009]
 gi|39652709|emb|CAE25448.1| DNA gyrase subunit B [Rhodopseudomonas palustris CGA009]
          Length = 813

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +SRVE ++   G     + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHASRVEVILNADG--SVTVRDDGRGIPVD 96


>gi|27364430|ref|NP_759958.1| DNA gyrase subunit B [Vibrio vulnificus CMCP6]
 gi|37678198|ref|NP_932807.1| DNA gyrase subunit B [Vibrio vulnificus YJ016]
 gi|320157813|ref|YP_004190192.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O]
 gi|27360549|gb|AAO09485.1| DNA gyrase, B subunit [Vibrio vulnificus CMCP6]
 gi|37196937|dbj|BAC92778.1| DNA gyrase, subunit B [Vibrio vulnificus YJ016]
 gi|319933125|gb|ADV87989.1| DNA gyrase subunit B [Vibrio vulnificus MO6-24/O]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 83/246 (33%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++     +T +Q    G   + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIHRGGHTHSQTYRHGVPDAPLAIIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 DTEKTGTTVRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKLFDEREEDKK 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +  +             +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNAEREDGIAVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|6939900|dbj|BAA90679.1| DNA gyrase subunit B [Porphyromonas asaccharolytica]
          Length = 553

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V   I     +  Q+TDNG G+  +
Sbjct: 12 VYEVVDNSIDEALAGYCTEVLVEILSD--NSIQVTDNGRGIPVD 53


>gi|150016898|ref|YP_001309152.1| osmosensitive K+ channel signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903363|gb|ABR34196.1| osmosensitive K+ channel signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 861

 Score = 44.7 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 42  VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTS--KISD 82
           +E  I    K+   ++ DNG G++ E +P   +R  T+  KISD
Sbjct: 770 IEVKIYENNKNVIFEVIDNGMGISEEILPHIFERFFTNGDKISD 813


>gi|325269651|ref|ZP_08136264.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
          multiformis DSM 16608]
 gi|324988019|gb|EGC19989.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
          multiformis DSM 16608]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A     +E  I     +   + D+G G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCKNIEVSINED--NSVTVEDDGRGIPVDEHKKL 91


>gi|315940113|gb|ADU56235.1| DNA gyrase subunit B [Nocardia speluncae]
          Length = 561

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++++E  + A GG    Q+ D+G G+ 
Sbjct: 1  EVVDNSVDEAMAGYATKIEVTLLADGG---VQVVDDGRGIP 38


>gi|294497602|ref|YP_003561302.1| two-component sensor histidine kinase DctS [Bacillus megaterium QM
           B1551]
 gi|294347539|gb|ADE67868.1| two-component sensor histidine kinase DctS [Bacillus megaterium QM
           B1551]
          Length = 521

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 30  LIENSLDA------ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LIEN+ D+         ++   +    G     + DNG GM  +++        ++K  +
Sbjct: 424 LIENAFDSYQHMERRERKIYISMEQNDGILSILVEDNGCGMNEDQVERIFDEGFSTKAKE 483


>gi|298206655|ref|YP_003714834.1| hypothetical protein CA2559_00320 [Croceibacter atlanticus
          HTCC2559]
 gi|83849285|gb|EAP87153.1| hypothetical protein CA2559_00320 [Croceibacter atlanticus
          HTCC2559]
          Length = 584

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 28 KELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIP 69
          KELI+N+ DA+S  V+  +           I D+G GM   E+ 
Sbjct: 29 KELIDNAYDADSENVKIQLPDELTPDQKIVIEDDGSGMKENEVR 72


>gi|323491055|ref|ZP_08096247.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546]
 gi|323314719|gb|EGA67791.1| DNA topoisomerase IV subunit B [Vibrio brasiliensis LMG 20546]
          Length = 626

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--K 181
              ++        N GT V             ++  S       + + +R  A+  P  +
Sbjct: 147 VSDLTVTGTCGRRNKGTSVHFW-------PDASYFDSPNFSVTRLVNNLRAKAVLCPGLE 199

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           ++FT     ++   +          E +
Sbjct: 200 ITFTDKVNGNDYRWLYEDGLKDYLAEGV 227


>gi|291515126|emb|CBK64336.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Alistipes shahii WAL
           8301]
          Length = 349

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC-TSK 79
             ++ DNG G+  E++P   +R   T K
Sbjct: 270 LIEVEDNGSGIAKEDLPRVFERFYRTDK 297


>gi|296137759|ref|YP_003645002.1| DNA gyrase subunit beta [Tsukamurella paurometabola DSM 20162]
 gi|296025893|gb|ADG76663.1| DNA gyrase, B subunit [Tsukamurella paurometabola DSM 20162]
          Length = 688

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 36/182 (19%)

Query: 29  ELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE-------EIPMAV-QRH 75
           E+++NS+D   A  ++RV+  +   GG    ++ D+G G+           + + +   H
Sbjct: 51  EVVDNSVDEAMAGHATRVDVKLRADGG---VEVIDDGRGIPVAMHAKGIPTVQLVLTSLH 107

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQI----AISG 125
              K   D   + + G  G       AL S      + +      +  G           
Sbjct: 108 AGGKFDSDAYAV-SGGLHGVGISVVNALSS-----RVEV----EIDVDGFHWQQNFHWDD 157

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
            K  SV    +                    F ++   +   ++  ++ MA     ++ T
Sbjct: 158 AKRDSVAEDLIKGEPTTRTGTTVRFWADPKVFTETTHYDFETVSRRLQEMAFLNKGLTIT 217

Query: 186 FS 187
            +
Sbjct: 218 LT 219


>gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
 gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
          Length = 421

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 21  ERPSIAIKELIENSLD---AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRH 75
           ER    +  L++N+L    A   ++   IA   G++  ++ D G G+ ++E+    +R 
Sbjct: 313 ERIGQVLANLLDNALKFTPAG-GQITVEIAAASGEAIVRVRDTGPGIPADELDRVFERF 370


>gi|251795347|ref|YP_003010078.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247542973|gb|ACS99991.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 459

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDA-----ESSR--VETVIA-GGGKSFFQITDNGFG 62
           + QI   ++I      +K    NS+DA     E+ R  ++ V+   G  +   + DNG G
Sbjct: 350 VKQIK--QVILN---IVK----NSIDAIESLQEARRGRIDLVVRSDGQFAEITLKDNGKG 400

Query: 63  MTSEEIPMAVQRHCTSK 79
           M    +        T+K
Sbjct: 401 MDKATLARLFDPFFTTK 417


>gi|13473722|ref|NP_105290.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14024473|dbj|BAB51076.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 504

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 9   KIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEE 67
            +  +I+A    E  +I +  LI+NS+   ++ V     + GGK+   + D+G G++   
Sbjct: 395 DLALRISA----ENAAIVLANLIDNSVRHGATLVSITAASSGGKATLLVGDDGAGISPSN 450

Query: 68  IPMAVQRHCT 77
                +   T
Sbjct: 451 RARIFEPFFT 460


>gi|89892751|ref|YP_516238.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
 gi|219666076|ref|YP_002456511.1| DNA gyrase subunit beta [Desulfitobacterium hafniense DCB-2]
 gi|89332199|dbj|BAE81794.1| DNA gyrase subunit B [Desulfitobacterium hafniense Y51]
 gi|219536336|gb|ACL18075.1| DNA gyrase, B subunit [Desulfitobacterium hafniense DCB-2]
          Length = 644

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 50 VYEIVDNSIDEALAGYCDTIEVTIHKD--NSISVVDNGRGIPVD 91


>gi|256394527|ref|YP_003116091.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256360753|gb|ACU74250.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 542

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 24  SIAIKELIENSLDAESSR-------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + A++ L+ N LD  +++       +   +A G     Q+ D G G+  E++    +R  
Sbjct: 428 ATALERLVTNLLD-NATKFSPEAGTITVTLADG---LLQVADQGPGIAEEDLTHVFERFY 483

Query: 77  TS 78
            S
Sbjct: 484 RS 485


>gi|225575717|ref|ZP_03784327.1| hypothetical protein RUMHYD_03810 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037075|gb|EEG47321.1| hypothetical protein RUMHYD_03810 [Blautia hydrogenotrophica DSM
          10507]
          Length = 384

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     ++  I  G      + DNG G+ 
Sbjct: 49 VYEIVDNAVDEALAGFCDEIQVTINSG--DSITVIDNGRGIP 88


>gi|210622684|ref|ZP_03293306.1| hypothetical protein CLOHIR_01254 [Clostridium hiranonis DSM 13275]
 gi|210154085|gb|EEA85091.1| hypothetical protein CLOHIR_01254 [Clostridium hiranonis DSM 13275]
          Length = 476

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 17  GEI--IE----RPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           GE+  I+    R    +  L++NSL   D     ++  +      +   +TDNG G+  E
Sbjct: 357 GEVKNIQGDKNRLRQVLINLVQNSLKFTDVG-GFIKITVNQDSEFTTISVTDNGSGIDKE 415

Query: 67  EIPMAVQRH 75
            +     + 
Sbjct: 416 NLERVFDKF 424


>gi|194339117|gb|ACF49474.1| GyrB [Amycolatopsis tolypomycina]
          Length = 458

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 17/74 (22%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPM---------AVQR 74
          E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +  P            Q 
Sbjct: 2  EVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDMHPKENKPTIEVVLTQL 58

Query: 75 HCTSKISDDFSNIH 88
          H   K   D   + 
Sbjct: 59 HAGGKFDSDSYAVS 72


>gi|154151176|ref|YP_001404794.1| DNA gyrase, B subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999728|gb|ABS56151.1| DNA gyrase, B subunit [Methanoregula boonei 6A8]
          Length = 708

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A   +R+  VI   G     + DNG G+  + +  
Sbjct: 39 VYEVVDNSIDEALAGFCNRICVVINKDG--SLMVEDNGRGIPVDTMEK 84


>gi|88800110|ref|ZP_01115679.1| hypothetical signal transduction histidine kinase regulating
           citrate/malate metabolism [Reinekea sp. MED297]
 gi|88777091|gb|EAR08297.1| hypothetical signal transduction histidine kinase regulating
           citrate/malate metabolism [Reinekea sp. MED297]
          Length = 540

 Score = 44.7 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 30  LIENSLDA-----ESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LI+N+L+A      +   V+  +   G     ++ D G G+  E+     Q+  TSK   
Sbjct: 437 LIDNALEATRQERGAGGEVQLSMTDLGHDLIIEVQDQGPGIPPEQAEQIFQKGFTSKADG 496

Query: 83  D 83
           D
Sbjct: 497 D 497


>gi|312877756|ref|ZP_07737708.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795475|gb|EFR11852.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 566

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 27/94 (28%)

Query: 1   MKIRKLSEKIINQIAAGE---IIE----RPSIAIKELIENSLDAESSRVETVIAGGGKS- 52
           M+I    +K    + + +   +IE    R    +  LI N++          +  GG+  
Sbjct: 429 MRIHA-KKKNQKLLCSTQENVVIEADRDRLEQVLINLINNAV--------VYVQEGGQIE 479

Query: 53  ----------FFQITDNGFGMTSEEIPMAVQRHC 76
                        + DNG G+  E++P   +R  
Sbjct: 480 VGLEKDEEHVRITVKDNGPGIPQEDLPRIFERFY 513


>gi|303235029|ref|ZP_07321653.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Finegoldia magna BVS033A4]
 gi|302493884|gb|EFL53666.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Finegoldia magna BVS033A4]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 30  LIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--KISDD 83
           L++N++   D  S  +          +  QI D+G G+   +     ++  TS  KI+D+
Sbjct: 543 LVDNAIKYTDEGS-NILIRAFKKDENTIIQICDDGNGIRDNDKGKIFRKFYTSNDKITDN 601

Query: 84  FSNIH 88
             +I 
Sbjct: 602 NRSIG 606


>gi|227496601|ref|ZP_03926879.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833881|gb|EEH66264.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 690

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A     +E  I   GG     + DNG G+  +E P
Sbjct: 60  VYEVVDNSVDEALAGFCDHIEVTIQADGGLK---VVDNGRGIPVDEHP 104


>gi|325972794|ref|YP_004248985.1| Chaperone protein htpG [Spirochaeta sp. Buddy]
 gi|324028032|gb|ADY14791.1| Chaperone protein htpG [Spirochaeta sp. Buddy]
          Length = 627

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 42/141 (29%)

Query: 19  IIERPSI----AIKELIENSLDAESS------------------RVETVI-AGGGKSFFQ 55
           II          ++EL+ NS DA                     R++      G K    
Sbjct: 17  IIHSLYSHKEIFLRELVSNSSDALDKLKYLTLTDEKLKDLSFDPRIDISFTEEGEKKTLT 76

Query: 56  ITDNGFGMTSEEI-------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGA 102
           I+DNG GM  +++         +  +   S ++DD             GF      S   
Sbjct: 77  ISDNGLGMNHDDLGDNLGTIASSGTKKFLSSLTDDQKKDSNLIGQFGVGF-----YSAFM 131

Query: 103 VS-HLTLMSRPPQNNTGAQIA 122
           V+  + ++SR        + +
Sbjct: 132 VADKVEVVSRKAGEEQAWKWS 152


>gi|298675295|ref|YP_003727045.1| DNA topoisomerase VI subunit B [Methanohalobium evestigatum
          Z-7303]
 gi|298288283|gb|ADI74249.1| DNA topoisomerase VI, B subunit [Methanohalobium evestigatum
          Z-7303]
          Length = 622

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 27 IKELIENSLDAESSR------VETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR 74
          +KE ++N+LDA +        +   I   GK    +   DNG G+  E+IP    +
Sbjct: 42 VKEAVDNALDA-AEESGILPDILLQIERTGKDTLAVIIEDNGPGIVREQIPKVFAK 96


>gi|295135619|ref|YP_003586295.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87]
 gi|294983634|gb|ADF54099.1| DNA gyrase subunit B [Zunongwangia profunda SM-A87]
          Length = 646

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I     +   + DNG G+  +
Sbjct: 44 VYEVVDNSIDEALAGHCDAIKVDINED--NSITVEDNGRGIPID 85


>gi|288573327|ref|ZP_06391684.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569068|gb|EFC90625.1| histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 186

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS+ A +  V   +     GG     + D+G GM  E     V    T
Sbjct: 14 ENSVGAGARNVTLNLVEDRSGGWLTLSVEDDGRGMDEETCAKVVDPFYT 62


>gi|260577096|ref|ZP_05845074.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259020674|gb|EEW23992.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 587

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDA--ESS--RVETVIAGGGKSFFQITDNGFGMTSE 66
            ++I   ++I         L+ N LDA    +  +++ ++  G  +   + DNG G+T  
Sbjct: 473 ADRIRLEQVIIN-------LLRNGLDATKGRTSPQIDLLLTAGDTATLTVRDNGPGIT-- 523

Query: 67  EIPMAVQRHCTSK 79
           ++    +   T+K
Sbjct: 524 DLENLFEPFYTTK 536


>gi|239626587|ref|ZP_04669618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516733|gb|EEQ56599.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 497

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 11/58 (18%)

Query: 28  KELIENSLDAESSR---------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           KEL+ N L + + +         +      GG    ++ DNG G+  E +    +R  
Sbjct: 388 KELLTNLL-SNAVKYNHPGGQVWINIR-EQGGNMVIRVRDNGMGIPEESLDRIFERFY 443


>gi|218131607|ref|ZP_03460411.1| hypothetical protein BACEGG_03227 [Bacteroides eggerthii DSM 20697]
 gi|217985910|gb|EEC52249.1| hypothetical protein BACEGG_03227 [Bacteroides eggerthii DSM 20697]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 77/256 (30%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 37  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVNIE 95

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 96  DN--LRVSVRDYGRGIPQGKLIEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 151

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S         ++     +   ++   M   T      +FF     L    S
Sbjct: 152 ----RFEVRSYRDG-----KVRTVIFEKGVLQSDVMEDSTEENGTYIFFEPDNTLFLNYS 202

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            Q +   +  ++R        ++F         +     +   +        I  + GED
Sbjct: 203 FQNQF--VETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMTSEGLYDIVHLKGED 260

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 261 IEIAFTHTNQYGEEYY 276


>gi|126729641|ref|ZP_01745454.1| C4-dicarboxylate transport sensor protein [Sagittula stellata E-37]
 gi|126709760|gb|EBA08813.1| C4-dicarboxylate transport sensor protein [Sagittula stellata E-37]
          Length = 583

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 17  GEIIERPSIAIKELIENSLDAES----SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           GE+  R       LI N+ DA +     R+   +  G +   ++ D G G+   +     
Sbjct: 472 GEV--RLGQVFVNLINNAADAMAGQAVKRIVIRVEAGERLVVRVRDTGPGIA--DPEKVF 527

Query: 73  QRHCTSK 79
           +   ++K
Sbjct: 528 EPFYSTK 534


>gi|78707341|gb|ABB46477.1| DNA gyrase subunit B [Acholeplasma brassicae]
          Length = 591

 Score = 44.7 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   +        ++TDNG G+  +
Sbjct: 23 EIVDNSIDECMAGYADEITIELLPNNI--VKVTDNGRGIPVD 62


>gi|242309378|ref|ZP_04808533.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523949|gb|EEQ63815.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 430

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  L++N+L    +    VE  +   G +F +I DNG GM  E++     R+ 
Sbjct: 338 VVDNLLDNALKYTQSG-GEVEVFV---GNNFLKIKDNGCGMEKEDLKRIFDRYY 387


>gi|241205681|ref|YP_002976777.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859571|gb|ACS57238.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 622

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 28/109 (25%)

Query: 6   LSEK----IINQIAAGEIIERPSIAIKELIENSLDAES-----SRVETVIA-GGGKSFFQ 55
           L       + N+I       R    +  L++N+L+A +      RVE   +   G     
Sbjct: 506 LPPDELQVMGNRI-------RLEQVLINLLQNALEAVAPKAGEGRVEIRTSTDAGMVTVT 558

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK---------ISDDFSNIHTFGFRGE 95
           + DNG G+  E          TSK         IS D   +  +G R E
Sbjct: 559 VADNGPGIPPEIRKGLFTPFNTSKESGLGLGLVISKDI--VGDYGGRME 605


>gi|5410257|gb|AAD43004.1|AF084946_1 microrchidia [Homo sapiens]
          Length = 984

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|86153486|ref|ZP_01071690.1| hypothetical protein CJJHB9313_0734 [Campylobacter jejuni subsp.
          jejuni HB93-13]
 gi|85843212|gb|EAQ60423.1| hypothetical protein CJJHB9313_0734 [Campylobacter jejuni subsp.
          jejuni HB93-13]
          Length = 73

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)

Query: 27 IKELIENSLDAESSRVETVIAG------GGKS-FFQITDNGFG 62
          I E I+N++DA+++R++            GK     I DNG G
Sbjct: 6  ISEAIKNAIDAKATRIDICFEECEGNSLFGKGISISIKDNGAG 48


>gi|304570783|ref|YP_002515534.2| DNA gyrase subunit B [Caulobacter crescentus NA1000]
          Length = 821

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++V+ ++   G     +TD+G G+  +
Sbjct: 61  VYEVVDNAIDEALAGHATKVQVILNADG--SVTVTDDGRGIPVD 102


>gi|304373045|ref|YP_003856254.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1]
 gi|304309236|gb|ADM21716.1| DNA gyrase subunit B [Mycoplasma hyorhinis HUB-1]
 gi|330723339|gb|AEC45709.1| DNA gyrase subunit B [Mycoplasma hyorhinis MCLD]
          Length = 640

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A  ++ +   I   G  + +++DNG G+ 
Sbjct: 42 EIVDNAVDEALAGFANTITVEITTDG--YVKVSDNGRGIP 79


>gi|295979449|dbj|BAJ07397.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
          Length = 318

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +++V+ ++   G     +TD+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATKVQVILNADG--SVTVTDDGRGIPVD 53


>gi|255654864|ref|ZP_05400273.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
 gi|296449611|ref|ZP_06891387.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296878069|ref|ZP_06902084.1| two component sensor histidine kinase [Clostridium difficile NAP07]
 gi|296261547|gb|EFH08366.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296430822|gb|EFH16654.1| two component sensor histidine kinase [Clostridium difficile NAP07]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 24  SIAIKELIENSLDA--ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQR 74
           S  +  L++N L A  ++ R++  ++   K    ++ DNG G+  E +    +R
Sbjct: 209 SRVVNNLVQNVL-AHSKARRIKITMSEDSKMVLLRVEDNGVGIAKENLQHIFER 261


>gi|237800772|ref|ZP_04589233.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023630|gb|EGI03687.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 621

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 17  GEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTSEE 67
           G +I    ER    +  L+ N++  + +    R+    +A G +  F+++D+G G+  E 
Sbjct: 270 GLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVAEGNEVLFKVSDDGIGIPKEH 327

Query: 68  IPMAVQRHCTSK 79
           +P   QR+ + K
Sbjct: 328 LPYIFQRYWSVK 339


>gi|1049326|gb|AAB51450.1| DNA gyrase beta subunit [Caulobacter crescentus CB15]
          Length = 212

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++V+ ++   G     +TD+G G+  +
Sbjct: 61  VYEVVDNAIDEALAGHATKVQVILNADG--SVTVTDDGRGIPVD 102


>gi|33152015|ref|NP_873368.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP]
 gi|33148237|gb|AAP95757.1| DNA topoisomerase IV subunit B [Haemophilus ducreyi 35000HP]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 80/208 (38%), Gaps = 27/208 (12%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   +  +++++ ++     +  ++ DNG GM  +         + 
Sbjct: 32  RPNHLAQEVIDNSVDEALSGFATQIDVILHSD--NSLEVIDNGRGMPVDIHSTEQISGVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
           + + + H   K S+     +TF  G  G  +  + A+S  + +  +    N       +G
Sbjct: 90  LILTKLHAGGKFSN---KNYTFSGGLHGVGISVVNALSEQVKIKIK-RDGNIYQIAFANG 145

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--VS 183
            K   +  V             F+  P    +  S +   + +  ++R  A+  PK  ++
Sbjct: 146 AKTEELHVVGSCAKKQTGTSVHFYPNP---KYFDSPRFSVSRLRHLLRAKAVLCPKLTIN 202

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           FT     +               E +++
Sbjct: 203 FTDHINHNQESWYYEDGLADYLSEALAE 230


>gi|538664|pir||C49347 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) B chain -
           Caulobacter crescentus (fragment)
 gi|13592169|gb|AAC43046.2| DNA gyrase B subunit [Caulobacter crescentus CB15]
          Length = 203

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++V+ ++   G     +TD+G G+  +
Sbjct: 61  VYEVVDNAIDEALAGHATKVQVILNADG--SVTVTDDGRGIPVD 102


>gi|16124415|ref|NP_418979.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
 gi|239977278|sp|B8GXQ0|GYRB_CAUCN RecName: Full=DNA gyrase subunit B
 gi|239977279|sp|P0CAX1|GYRB_CAUCR RecName: Full=DNA gyrase subunit B
 gi|13421273|gb|AAK22147.1| DNA gyrase subunit B [Caulobacter crescentus CB15]
 gi|220962270|gb|ACL93626.1| DNA gyrase subunit B [Caulobacter crescentus NA1000]
          Length = 805

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +++V+ ++   G     +TD+G G+  +
Sbjct: 45 VYEVVDNAIDEALAGHATKVQVILNADG--SVTVTDDGRGIPVD 86


>gi|19909537|dbj|BAB86964.1| DNA gyrase subunit B [Caulobacter vibrioides]
          Length = 478

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +++V+ ++   G     +TD+G G+  +
Sbjct: 11 VYEVVDNAIDEALAGHATKVQVILNADG--SVTVTDDGRGIPVD 52


>gi|66818040|ref|XP_642713.1| hypothetical protein DDB_G0277185 [Dictyostelium discoideum AX4]
 gi|60470806|gb|EAL68778.1| hypothetical protein DDB_G0277185 [Dictyostelium discoideum AX4]
          Length = 2284

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 14/63 (22%)

Query: 25  IAIKELIENSLDA------ESSRVETVIAGGGKSF----FQITDNGFGMTSEEIPMAVQR 74
            AI E I+NS+ A          ++  I            +I DNG GM  +    A+QR
Sbjct: 193 NAIAEFIDNSIQAVRLNPPGKREIKVTINRPNSDLRTTSIRIWDNGCGMNKD----ALQR 248

Query: 75  HCT 77
             T
Sbjct: 249 WAT 251


>gi|325578618|ref|ZP_08148718.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus
          parainfluenzae ATCC 33392]
 gi|325159854|gb|EGC71984.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Haemophilus
          parainfluenzae ATCC 33392]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +++VE ++        ++ DNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKVEVILHAD--QSLEVIDNGRGMPVD 77


>gi|301156477|emb|CBW15948.1| DNA topoisomerase IV, subunit B [Haemophilus parainfluenzae T3T1]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +++VE ++        ++ DNG GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGFATKVEVILHAD--QSLEVIDNGRGMPVD 77


>gi|292669190|ref|ZP_06602616.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292649031|gb|EFF67003.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 533

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 27/163 (16%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGG-------G---------KSFFQITDNGFGMT 64
           + P I  +E I+N+ DA    ++  +  G       G         K +  I DNG G+ 
Sbjct: 22  QDPIIIYREYIQNACDA----IDQAVREGLYAEQRQGSVHLLIDRDKRYVCIEDNGAGVP 77

Query: 65  SEEIPMAVQRHCTSKISDDFSNIHTFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           + +    V     S    D       GFRG   L  +     L   +R       +++  
Sbjct: 78  AAKFRSTVGDIANS----DKEAGKDKGFRGIGRLAGLAYCKRLVFTTRAAGETAVSRLEC 133

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
              +  ++     +  T  EV D  F+  A     K       
Sbjct: 134 DAVQFRAMVDEKGH--TAAEVLDAAFSFSAEEAKKKDAAHFFR 174


>gi|261883807|ref|ZP_06007846.1| DNA gyrase subunit B [Campylobacter fetus subsp. venerealis str.
          Azul-94]
          Length = 247

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          E+++NS+D   A     +   +   G     +TDNG G+  +        H T KIS
Sbjct: 44 EVVDNSIDESMAGYCDTINIELTREG--SCIVTDNGRGIPVD-------IHPTEKIS 91


>gi|152989756|ref|YP_001355478.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2]
 gi|151421617|dbj|BAF69121.1| DNA gyrase subunit B [Nitratiruptor sp. SB155-2]
          Length = 774

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 84/218 (38%), Gaps = 26/218 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP---------MAVQRH 75
           E+++N++D   A   ++++  +   G +    +DNG G+  +  P         +    H
Sbjct: 42  EVVDNAIDEAMAGYCNKIDITLTKDGSARI--SDNGRGIPVDIHPTEKIPAATVVLTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV- 134
              K   D +   + G  G  +  + A+S   +M+         Q    G  I+ +  + 
Sbjct: 100 AGGKFGGDSAYKVSGGLHGVGVSVVNALSKKLIMTIKRDGKIWRQEFERGIPITDLVAIG 159

Query: 135 -AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
                GT +E               ++ + + ++++   + +A   P ++ TF   + N 
Sbjct: 160 ETRQTGTTIEFW-------PDEEIFETTEFKFDILSRRFKELAYLNPNITITFKDERVNT 212

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEI 231
            ++      G   + +  +  ++ +   +  ++K +++
Sbjct: 213 KEVYHF--EGGLRQFVEDLNTKEALTKTIYFHDKVDDV 248


>gi|118474635|ref|YP_891213.1| DNA gyrase subunit B [Campylobacter fetus subsp. fetus 82-40]
 gi|118413861|gb|ABK82281.1| DNA gyrase, B subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 773

 Score = 44.7 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          E+++NS+D   A     +   +   G     +TDNG G+  +        H T KIS
Sbjct: 44 EVVDNSIDESMAGYCDTINIELTREG--SCIVTDNGRGIPVD-------IHPTEKIS 91


>gi|194339097|gb|ACF49464.1| GyrB [Amycolatopsis palatopharyngis]
          Length = 439

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++RVE  + A GG    ++ D+G G+  +
Sbjct: 7  EVVDNSVDEAMAGYATRVEVTLLADGG---VRVVDDGRGIPVD 46


>gi|156977928|ref|YP_001448834.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156529522|gb|ABU74607.1| hypothetical protein VIBHAR_06723 [Vibrio harveyi ATCC BAA-1116]
          Length = 686

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 21  ERPSIAIKELIENSLDA-ESSRVETVIAGGGKSFF----------QITDNGFGMTSEEIP 69
           +R    +  L+ N+LDA  ++           +             ++DNG G++ E + 
Sbjct: 580 QRLLQVLGNLVSNALDAMGNTT------NPQLNLIVNPTANQVELTVSDNGCGVSDEMLE 633

Query: 70  MAVQRHCTS-KISDDF 84
              +   TS KI +  
Sbjct: 634 SMFEPFQTSKKIGEGL 649


>gi|1773367|gb|AAB49362.1| putative histidine protein kinase [Alcaligenes hydrogenophilus]
          Length = 456

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 30  LIENSLDA----ESSR----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N  DA     +      ++  I  G  S F I DNG G+  + +        T+K
Sbjct: 356 LIQNGYDASAASGADTQQLWIDAKIENGVVSLF-IRDNGSGIPPQNLSRIFDPFFTTK 412


>gi|20090442|ref|NP_616517.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
          acetivorans C2A]
 gi|19915457|gb|AAM04997.1| DNA topoisomerase (ATP-hydrolyzing), subunit B [Methanosarcina
          acetivorans C2A]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +RV+  I   G     + DNG G+  +
Sbjct: 41 VYEVVDNSIDEALAGFCTRVDVTINPDG--SVTVLDNGRGIPID 82


>gi|31071479|dbj|BAC76788.1| DNA gyrase B subunit [Chlorogloeopsis fritschii PCC 6912]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  +   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDLNADG--SVTVTDDGRGIPTD 51


>gi|23978251|dbj|BAC21117.1| DNA gyrase B subunit [Chlorogloeopsis sp. PCC 6718]
          Length = 396

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  +   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDLNADG--SVTVTDDGRGIPTD 51


>gi|21225782|ref|NP_631561.1| heat shock protein 90 [Streptomyces coelicolor A3(2)]
 gi|256783187|ref|ZP_05521618.1| heat shock protein 90 [Streptomyces lividans TK24]
 gi|289767065|ref|ZP_06526443.1| heat shock protein 90 [Streptomyces lividans TK24]
 gi|17865482|sp|P58481|HTPG_STRCO RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|14495026|emb|CAC42143.1| heat shock protein [Streptomyces coelicolor A3(2)]
 gi|289697264|gb|EFD64693.1| heat shock protein 90 [Streptomyces lividans TK24]
          Length = 638

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 45/185 (24%)

Query: 27  IKELIENSLDA--------------ESS----RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA              ++      +E  +    ++   + DNG GM+ +E+
Sbjct: 31  LRELVSNASDALDKLRLAALRDDAPDADVSDLHIELEVDKDARTL-TVRDNGIGMSYDEV 89

Query: 69  PMAVQRHC---TSKISDDFSN----------IHTF--GFRGEALPSIGAVSH-LTLMSRP 112
              +       T+K  ++             I  F  GF      S   V+  +TL++R 
Sbjct: 90  TRLIGTIANSGTAKFLEELREAKDAAGADGLIGQFGVGF-----YSGFMVADEVTLVTRH 144

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
                G +    GE   ++  +     GT V +      +  +L+   S       I ++
Sbjct: 145 AGETEGTRWTSRGEGTYTLERIGEAPQGTAVTLHLKPADVENQLHDYTS----AWKIKEI 200

Query: 172 IRRMA 176
           ++R +
Sbjct: 201 VKRYS 205


>gi|23978217|dbj|BAC21107.1| DNA gyrase B subunit [Calothrix brevissima]
          Length = 398

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  +   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDLNADG--SVTVTDDGRGIPTD 51


>gi|329925092|ref|ZP_08280036.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
 gi|328940211|gb|EGG36543.1| DNA gyrase, B subunit [Paenibacillus sp. HGF5]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +E ++     +   + DNG G+ 
Sbjct: 42 EVVDNSIDEAMAGICDHIEIIVHED--NSITVIDNGRGIP 79


>gi|325856512|ref|ZP_08172201.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
 gi|327313062|ref|YP_004328499.1| DNA gyrase subunit B [Prevotella denticola F0289]
 gi|325483481|gb|EGC86454.1| DNA gyrase, B subunit [Prevotella denticola CRIS 18C-A]
 gi|326945170|gb|AEA21055.1| DNA gyrase, B subunit [Prevotella denticola F0289]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A     +E  I     +   + D+G G+  +E    
Sbjct: 47 ETVDNSIDEAMAGYCKNIEVTINED--NSVTVEDDGRGIPVDEHKKL 91


>gi|313898854|ref|ZP_07832388.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
 gi|312956436|gb|EFR38070.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
          Length = 474

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 23  PSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
              A++ LI+N++   DA +  +       GKS+   +TD+G GM  E+I  A Q   
Sbjct: 364 LFSALRNLIDNAIKASDA-AQEILVKGELCGKSYRISVTDHGIGMREEDIQQASQPFY 420


>gi|293346014|ref|XP_002726237.1| PREDICTED: MORC family CW-type zinc finger 4 isoform 2 [Rattus
           norvegicus]
 gi|293363179|ref|XP_002730336.1| PREDICTED: microrchidia 4 isoform 1 [Rattus norvegicus]
          Length = 895

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     K     TD+G GMT+ ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVCARTVFIDVEEVKNKPCLTFTDDGCGMTAHKLYRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|293346012|ref|XP_001053814.2| PREDICTED: MORC family CW-type zinc finger 4 isoform 1 [Rattus
           norvegicus]
 gi|293363177|ref|XP_236536.5| PREDICTED: microrchidia 4 isoform 2 [Rattus norvegicus]
          Length = 932

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     K     TD+G GMT+ ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVCARTVFIDVEEVKNKPCLTFTDDGCGMTAHKLYRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|260913631|ref|ZP_05920107.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis
          ATCC 43325]
 gi|260632170|gb|EEX50345.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Pasteurella dagmatis
          ATCC 43325]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 30 TRPNHLGQEVIDNSVDEALAGYATKIEVILHKD--QSLEVIDNGRGMPVD 77


>gi|229032434|ref|ZP_04188403.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228728881|gb|EEL79888.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 395

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 354


>gi|229175495|ref|ZP_04303005.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228607891|gb|EEK65203.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 394

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 354


>gi|229198940|ref|ZP_04325628.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228584539|gb|EEK42669.1| Sensor histidine kinase [Bacillus cereus m1293]
          Length = 395

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 303 LIKNAIEAMSVGGTITIKVTVEDA--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 354


>gi|227112782|ref|ZP_03826438.1| DNA topoisomerase IV subunit B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 631

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 77/211 (36%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S       + G  G  +  + A+S  + +  +      +   +    
Sbjct: 89  ELILCRLHAGGKFSGKNYQ-FSGGLHGVGISVVNALSTRVEVTVKRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            ++++        N GT V              F  S +   + +T +++  A+  P V 
Sbjct: 148 VQELTVTGTCGRRNTGTRVHFW-------PDEKFFDSARFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +        N    E ++ +
Sbjct: 201 IIFKDKVNNTEQRWCYQDGLNDYLCEAVNGL 231


>gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group]
          Length = 800

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 26  AIKELIENSLDAESSRVETVIA-------GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           AI ELI+NS DA++SR+   +                + D+G GMT  E+   +    
Sbjct: 244 AIAELIDNSRDADASRLNISVKSLFSKKADKKIPVLSVIDDGHGMTCAEMMRMISFGH 301


>gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1010

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 30  LIENSL---DAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N++   D  +  +    +GGG +    +++D+G GMT++++    +   
Sbjct: 649 LVSNAIKFTDRGAVALSVSASGGGATPVTIRVSDSGIGMTADQLAHVFEPFA 700


>gi|261403882|ref|YP_003240123.1| DNA gyrase subunit B [Paenibacillus sp. Y412MC10]
 gi|261280345|gb|ACX62316.1| DNA gyrase, B subunit [Paenibacillus sp. Y412MC10]
          Length = 636

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +E ++     +   + DNG G+ 
Sbjct: 44 EVVDNSIDEAMAGICDHIEIIVHED--NSITVIDNGRGIP 81


>gi|165971697|gb|AAI58848.1| Morc4 protein [Rattus norvegicus]
          Length = 249

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            RP  AI EL++N++D +  +  V   +     K     TD+G GMT+ ++   +    T
Sbjct: 48  TRPFSAIAELLDNAVDPDVCARTVFIDVEEVKNKPCLTFTDDGCGMTAHKLYRMLSFGFT 107

Query: 78  SK 79
            K
Sbjct: 108 DK 109


>gi|91977743|ref|YP_570402.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91684199|gb|ABE40501.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 812

 Score = 44.7 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%)

Query: 34  SLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           SLDA    V   +  G      +TDNG GM  E +    +   T+K
Sbjct: 579 SLDASYQVVNQDVRPGDYVLVSVTDNGSGMPREVLEHVFEPFYTTK 624


>gi|325291486|ref|YP_004277350.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059339|gb|ADY63030.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 596

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 17  GEIIERPSIAIKELIENS---LDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAV 72
           G+I+         LIEN+   +  ES R+   ++        Q+ DNG G+ +E+I    
Sbjct: 480 GQIVTN-------LIENARSFVSEESGRITVRLSRHKDRCIVQVEDNGPGIQAEDIDRIF 532

Query: 73  QRHCT 77
           +R  T
Sbjct: 533 ERFYT 537


>gi|297570618|ref|YP_003696392.1| DNA gyrase subunit beta [Arcanobacterium haemolyticum DSM 20595]
 gi|296930965|gb|ADH91773.1| DNA gyrase, B subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 682

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  +S +   +   G    ++ D+G G+  +
Sbjct: 58 VYEVVDNSVDEALAGYASEITVTLLDNG--GVKVEDDGRGIPVD 99


>gi|206977360|ref|ZP_03238257.1| putative sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206744511|gb|EDZ55921.1| putative sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 406

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|149375632|ref|ZP_01893401.1| DNA gyrase, B subunit [Marinobacter algicola DG893]
 gi|149360034|gb|EDM48489.1| DNA gyrase, B subunit [Marinobacter algicola DG893]
          Length = 804

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++NS+D   A   S +  +I         + DNG G+  +
Sbjct: 43 ELVDNSIDEALAGHCSEIGVIIHPD--ESVTVRDNGRGIPVD 82


>gi|94983851|gb|ABF50630.1| DNA topoisomerase IV subunit B [Spiroplasma cantharicola]
          Length = 555

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I   G     + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGVCSEINVSIEKDG--SVTVKDNGRGVP 51


>gi|170726317|ref|YP_001760343.1| response regulator receiver sensor signal transduction histidine
           kinase [Shewanella woodyi ATCC 51908]
 gi|169811664|gb|ACA86248.1| response regulator receiver sensor signal transduction histidine
           kinase [Shewanella woodyi ATCC 51908]
          Length = 427

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 26/96 (27%)

Query: 3   IRKLS--EKIINQIA----AGEIIER----PSIAIKELIENSLDAESSRVETVIAGGGKS 52
           I  L   +   +QI      G ++E         +KEL+ NS+   +   +      G  
Sbjct: 288 IEILPALDLTHHQITIEGDKGIVVETYPETLKQVLKELLLNSI-THAFEEDIK----GHV 342

Query: 53  FFQI-----------TDNGFGMTSEEIPMAVQRHCT 77
             ++            D+G G+ ++ + M  +   T
Sbjct: 343 MIKVEKVDERVRLTFRDDGCGIEADTLAMVFEPFFT 378


>gi|39998038|ref|NP_953989.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984983|gb|AAR36339.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|298506980|gb|ADI85703.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 475

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 37  AESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           A  + +   I     G +   + D G G++++++P    R   S
Sbjct: 383 AGGT-ITVSIDRADDGAALLTVIDTGIGISADDLPRVFDRFYRS 425


>gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group]
 gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa
           Japonica Group]
 gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group]
          Length = 792

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 26  AIKELIENSLDAESSRVETVIA-------GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           AI ELI+NS DA++SR+   +                + D+G GMT  E+   +    
Sbjct: 244 AIAELIDNSRDADASRLNISVKSLFSKKADKKIPVLSVIDDGHGMTCAEMMRMISFGH 301


>gi|15887391|ref|NP_353072.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|20141262|sp|Q07737|CHVG_AGRT5 RecName: Full=Sensor protein ChvG
 gi|15154896|gb|AAK85857.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|23297187|gb|AAN12306.1| global pH sensor protein [Agrobacterium tumefaciens]
          Length = 596

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 17  GEIIERPSIAIKELIENS---LDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAV 72
           G+I+         LIEN+   +  ES R+   ++        Q+ DNG G+ +E+I    
Sbjct: 480 GQIVTN-------LIENARSFVSEESGRITVRLSRHKDRCIVQVEDNGPGIQAEDIDRIF 532

Query: 73  QRHCT 77
           +R  T
Sbjct: 533 ERFYT 537


>gi|116748066|ref|YP_844753.1| histidine kinase [Syntrophobacter fumaroxidans MPOB]
 gi|116697130|gb|ABK16318.1| histidine kinase [Syntrophobacter fumaroxidans MPOB]
          Length = 313

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 6/60 (10%)

Query: 25  IAIKELIENS---LDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L+ N+   +DA    +     +   G     ++D G G+  E          T+K
Sbjct: 205 QVVLNLLINANAAIDAG-GCITVATRVVDNGYVELSVSDTGCGIPEENRDKIFDPFFTTK 263


>gi|327396622|dbj|BAK14043.1| sensor protein DcuS [Pantoea ananatis AJ13355]
          Length = 543

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 6   LSEK-IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIA-GGGKSFFQIT 57
           L +     QIAA          +  LIEN+L+A          +  ++    G    +++
Sbjct: 423 LPDNGSEQQIAA------LITVLGNLIENALEALEPEMEG--EIHVMLHYQNGWLSCEVS 474

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           D+G G+ ++++    +R  ++K
Sbjct: 475 DDGPGIPADQLAAIFERGVSTK 496


>gi|313159785|gb|EFR59141.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 907

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 41  RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC----TS 78
            +   +   G S   ++ DNG G+  E +P    R      TS
Sbjct: 533 TILVSVTDNGPSVLIEVEDNGKGIDKESLPRIFDRFYALKNTS 575


>gi|297284936|ref|XP_002802731.1| PREDICTED: MORC family CW-type zinc finger protein 1-like [Macaca
          mulatta]
          Length = 950

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNENLQGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|291619667|ref|YP_003522409.1| DcuS [Pantoea ananatis LMG 20103]
 gi|291154697|gb|ADD79281.1| DcuS [Pantoea ananatis LMG 20103]
          Length = 546

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 6   LSEK-IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIA-GGGKSFFQIT 57
           L +     QIAA          +  LIEN+L+A          +  ++    G    +++
Sbjct: 426 LPDNGSEQQIAA------LITVLGNLIENALEALDPEMEG--EIHVMLHYQNGWLSCEVS 477

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           D+G G+ ++++    +R  ++K
Sbjct: 478 DDGPGIPADQLAAIFERGVSTK 499


>gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
 gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
          Length = 596

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
            ++ LI+N++   DA   RV        ++   +++DNG G+   ++    +R  
Sbjct: 484 VMRNLIDNAVKYVDANRGRVRVSACKADQNVAIEVSDNGIGIPQADLKRIFERFY 538


>gi|226943916|ref|YP_002798989.1| C4-dicarboylate transport sensory histidine protein kinase,
           two-component DctB [Azotobacter vinelandii DJ]
 gi|226718843|gb|ACO78014.1| C4-dicarboylate transport sensory histidine protein kinase,
           two-component; DctB [Azotobacter vinelandii DJ]
          Length = 592

 Score = 44.7 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +      +   +   GG     + D+G G+ +E +    +   
Sbjct: 475 RFEQVLVNLLHNALDAMAGRARRELRIALRRDGGDWLLSVADSGGGIAAEHLLRVFEPFF 534

Query: 77  TSK 79
           T+K
Sbjct: 535 TTK 537


>gi|332817460|ref|XP_003309972.1| PREDICTED: MORC family CW-type zinc finger protein 1 isoform 1
          [Pan troglodytes]
          Length = 963

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|261415453|ref|YP_003249136.1| hypothetical protein Fisuc_1049 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371909|gb|ACX74654.1| hypothetical protein Fisuc_1049 [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 2408

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 20/88 (22%)

Query: 25  IAIKELIENSLDAESSRVETV------------IAGGGKSFFQITDNGFGMTSEEIPMAV 72
             +KELI+N+ DA ++++               +   G     + +NG     ++     
Sbjct: 32  TILKELIQNASDANATKIVIRSFTAVPNAHCPLLKRAG---IVVYNNGK-FDEDDAKNIA 87

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSI 100
                +K  +D + I  +GF    L SI
Sbjct: 88  MFGGDNK-KNDATTIGRYGF---GLKSI 111


>gi|189426202|ref|YP_001953379.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
 gi|189422461|gb|ACD96859.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R   A+++++EN+     D  ++ V   +   GG +   I D+G G+  EE+P   +R 
Sbjct: 256 DRLMFALQQILENAFKFSSD-GAT-VAIRLTRAGGHAEIAIRDSGCGIAEEEMPKIFERF 313

Query: 76  C 76
            
Sbjct: 314 Y 314


>gi|149919818|ref|ZP_01908295.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1]
 gi|149819425|gb|EDM78856.1| DNA gyrase subunit B [Plesiocystis pacifica SIR-1]
          Length = 872

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           +      + E+++NS+D   A    +++ VI         + D+G G+ 
Sbjct: 62  VTGLHKMVFEILDNSIDEALAGHCKQIQIVIHED--ESISVEDDGRGIP 108


>gi|114588380|ref|XP_526261.2| PREDICTED: MORC family CW-type zinc finger protein 1 isoform 2
          [Pan troglodytes]
          Length = 984

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|30047715|gb|AAH50307.1| MORC family CW-type zinc finger 1 [Homo sapiens]
 gi|119600120|gb|EAW79714.1| MORC family CW-type zinc finger 1 [Homo sapiens]
 gi|325463725|gb|ADZ15633.1| MORC family CW-type zinc finger 1 [synthetic construct]
          Length = 984

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|93007238|ref|YP_581675.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5]
 gi|92394916|gb|ABE76191.1| DNA topoisomerase IV subunit B [Psychrobacter cryohalolentis K5]
          Length = 628

 Score = 44.7 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  ++  +   G     + D+G GM ++
Sbjct: 29 TRPNHLAQEVIDNSVDEALAGYAKTIKVQLHSDG--SLSVEDDGRGMPTD 76


>gi|257051019|sp|Q9SS38|GYRBP_ARATH RecName: Full=DNA gyrase subunit B, chloroplastic; Flags: Precursor
          Length = 661

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 40/258 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+++ V+         I+DNG G+   ++      H  T K  
Sbjct: 51  VYEILDNAIDEAQAGFASKIDVVLHSD--DSVSISDNGRGI-PTDL------HPATGK-- 99

Query: 82  DDFSNIHTF------------------GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA 122
                + T                   G  G  L  + A+S  L ++ R        + +
Sbjct: 100 SSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYS 159

Query: 123 ISGEKISSVRPVAMN--PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +    V      GT       +        F  + Q + N I   IR +A   P
Sbjct: 160 RGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNP 219

Query: 181 KVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           KV+ +      +  R   +     G   E +S +  +    + V    K           
Sbjct: 220 KVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEIN-GSTVDVS 278

Query: 239 IPTFNRGNANQFYVFING 256
           +   +   ++    + N 
Sbjct: 279 LQWCSDAYSDTMLGYANS 296


>gi|240255313|ref|NP_187638.4| ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)
           [Arabidopsis thaliana]
          Length = 693

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 40/258 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+++ V+         I+DNG G+   ++      H  T K  
Sbjct: 51  VYEILDNAIDEAQAGFASKIDVVLHSD--DSVSISDNGRGI-PTDL------HPATGK-- 99

Query: 82  DDFSNIHTF------------------GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA 122
                + T                   G  G  L  + A+S  L ++ R        + +
Sbjct: 100 SSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYS 159

Query: 123 ISGEKISSVRPVAMN--PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +    V      GT       +        F  + Q + N I   IR +A   P
Sbjct: 160 RGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNP 219

Query: 181 KVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           KV+ +      +  R   +     G   E +S +  +    + V    K           
Sbjct: 220 KVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEIN-GSTVDVS 278

Query: 239 IPTFNRGNANQFYVFING 256
           +   +   ++    + N 
Sbjct: 279 LQWCSDAYSDTMLGYANS 296


>gi|221625538|ref|NP_055244.3| MORC family CW-type zinc finger protein 1 [Homo sapiens]
 gi|269849621|sp|Q86VD1|MORC1_HUMAN RecName: Full=MORC family CW-type zinc finger protein 1; AltName:
          Full=Cancer/testis antigen 33; Short=CT33
          Length = 984

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 29 ELIENSLDAESSRVET-VIAG----GGKSFFQITDNGFGMTSEEIP--MAVQRHCTSKIS 81
          EL++N+ DA + R++   +      GG     + D+G GM+ EE    +   R   SK  
Sbjct: 34 ELLDNARDAGAERLDVFSVDNEKLQGGFMLCFL-DDGCGMSPEEASDIIYFGR---SK-- 87

Query: 82 DDFSNIHTFGFRG 94
               + T  F G
Sbjct: 88 ---KRLSTLKFIG 97


>gi|221102675|ref|XP_002167541.1| PREDICTED: similar to MORC family CW-type zinc finger protein 2A
          (Zinc finger CW-type coiled-coil domain protein 1),
          partial [Hydra magnipapillata]
          Length = 540

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 29 ELIENSLDAESSRVETVIAGG----GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          EL++NS DA+++ +           G       DNG GM + E+   +Q   +SK
Sbjct: 34 ELVDNSRDADATELYVYTVPNEKFRGGFIICFRDNGCGMDAVEVSQVIQFGRSSK 88


>gi|166031389|ref|ZP_02234218.1| hypothetical protein DORFOR_01078 [Dorea formicigenerans ATCC
           27755]
 gi|166028794|gb|EDR47551.1| hypothetical protein DORFOR_01078 [Dorea formicigenerans ATCC
           27755]
          Length = 498

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 19  IIERPSI---AIKELIENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMA 71
           +I  P      +  ++ NS+   D +  ++   +   G     +I DNG G+ S+++P  
Sbjct: 377 VIADPEQIKRVVHNIVNNSVKYMDKDKPKINLRVKDVGDFVQIEIEDNGKGIASKDLPNV 436

Query: 72  VQRHCTSKISDDFSNIHTFGFRGEALPSI 100
            +R        D S   + G  G  L SI
Sbjct: 437 FERFY----RTDASRNSSKGGSGIGL-SI 460


>gi|194367130|ref|YP_002029740.1| integral membrane sensor signal transduction histidine kinase
           [Stenotrophomonas maltophilia R551-3]
 gi|194349934|gb|ACF53057.1| integral membrane sensor signal transduction histidine kinase
           [Stenotrophomonas maltophilia R551-3]
          Length = 463

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 22/97 (22%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           AIK L++N+L    D    ++   +  GG++   I D+G G+ + +     +R       
Sbjct: 362 AIKNLVDNALKYGGD-GPLQIALTVE-GGQAVLTIADHGTGIAAADAERVFERFA----- 414

Query: 82  DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTG 118
                      RGE  PS GA   L ++ R   ++ G
Sbjct: 415 -----------RGEGAPSGGAGLGLAIVKRVVDSHGG 440


>gi|94266055|ref|ZP_01289774.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93453377|gb|EAT03805.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 615

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 30  LIENSLD---AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           LI+N++    A    +    A   G+    + D G G+  E +    +R        D +
Sbjct: 495 LIDNAIKYGKAG-GEITVSAATAAGEILIGVRDRGPGIPPEALSRIFERFY----RVDKA 549

Query: 86  NIHTFGFRGEALP---SIGAV--SHLTLMSRPPQNNTGAQI 121
              + G  G  L     I  V    + + SRP +       
Sbjct: 550 RSTSLGGTGLGLAIVKHIAQVHHGRIEVSSRPEEGTIFTIH 590


>gi|6056198|gb|AAF02815.1|AC009400_11 putative DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 40/258 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+++ V+         I+DNG G+   ++      H  T K  
Sbjct: 47  VYEILDNAIDEAQAGFASKIDVVLHSD--DSVSISDNGRGI-PTDL------HPATGK-- 95

Query: 82  DDFSNIHTF------------------GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA 122
                + T                   G  G  L  + A+S  L ++ R        + +
Sbjct: 96  SSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYS 155

Query: 123 ISGEKISSVRPVAMN--PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +    V      GT       +        F  + Q + N I   IR +A   P
Sbjct: 156 RGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNP 215

Query: 181 KVSFTFSTIKSN--RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
           KV+ +      +  R   +     G   E +S +  +    + V    K           
Sbjct: 216 KVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEIN-GSTVDVS 274

Query: 239 IPTFNRGNANQFYVFING 256
           +   +   ++    + N 
Sbjct: 275 LQWCSDAYSDTMLGYANS 292


>gi|67906500|gb|AAY82607.1| predicted topoisomerase IV subunit B [uncultured bacterium
          MedeBAC35C06]
          Length = 605

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
            P+  I+E+++NS+D   A   S+++ ++      F ++ DNG GM  +
Sbjct: 6  TNPNHLIQEVLDNSVDEALAGHCSKIKIILYKD--QFIEVIDNGRGMPVD 53


>gi|108804263|ref|YP_644200.1| hypothetical protein Rxyl_1426 [Rubrobacter xylanophilus DSM
          9941]
 gi|108765506|gb|ABG04388.1| hypothetical protein Rxyl_1426 [Rubrobacter xylanophilus DSM
          9941]
          Length = 302

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTS 78
          A+ E++ N+ DA +SR+    A   + +    + D+G G+      +  +   TS
Sbjct: 34 ALLEMLRNARDAGASRIFVATALRSRRYRTLTVLDDGRGVPEPYAELIFEPGVTS 88


>gi|257066705|ref|YP_003152961.1| histidine kinase [Anaerococcus prevotii DSM 20548]
 gi|256798585|gb|ACV29240.1| histidine kinase [Anaerococcus prevotii DSM 20548]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 11/76 (14%)

Query: 18  EIIER-PSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRH 75
           ++I+   + AIK     ++D +   +E  ++G   K F +ITD+G G+ S+++ M  +R 
Sbjct: 338 QVIQNILTNAIK-----AIDRD-GNIEIKLSGYKQKVFIEITDDGIGIDSDKLDMIFERF 391

Query: 76  CTSKISDDFSNIHTFG 91
              +I DD  N  T G
Sbjct: 392 Y--RI-DDSRNTKTNG 404


>gi|226226058|ref|YP_002760164.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226089249|dbj|BAH37694.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E    A+  ++ N++DA   +  ++  +         +I D+G GMT E +    + + T
Sbjct: 281 ESLVRAVTNILINAVDATPGAGTIQVAVYREPSMVAIRIGDSGTGMTPEVLQRIFEPYVT 340

Query: 78  SK 79
           +K
Sbjct: 341 TK 342


>gi|169832051|ref|YP_001718033.1| histidine kinase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638895|gb|ACA60401.1| histidine kinase [Candidatus Desulforudis audaxviator MP104C]
          Length = 772

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 33  NSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+ DA      + V       G S    ++D+G G+  E +P       T+K
Sbjct: 522 NAFDAVNGRGGT-VTIRTWDTGSSINVSVSDDGCGIPPEALPYVFDPFFTTK 572


>gi|94471626|gb|ABF21079.1| DNA gyrase subunit B [Acholeplasma hippikon]
          Length = 599

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ V   I        ++ DNG G+  +
Sbjct: 31 EIVDNSIDEALAGYANEVNIEILPDNI--IKVRDNGRGIPVD 70


>gi|154250568|ref|YP_001411392.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154154518|gb|ABS61735.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 615

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 21  ERPSIAIKELIENSLDAESS------RVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQ 73
            R    ++ LI+N+L    S       V        G+   ++ D G G+  E +     
Sbjct: 504 TRLGQVVRNLIDNAL----SFSPEGGTVYVSATRAPGRVIIRVEDEGPGIAPENVERIFD 559

Query: 74  RHCT 77
           R  T
Sbjct: 560 RFHT 563


>gi|119489064|ref|ZP_01621970.1| hypothetical protein L8106_22216 [Lyngbya sp. PCC 8106]
 gi|119454813|gb|EAW35957.1| hypothetical protein L8106_22216 [Lyngbya sp. PCC 8106]
          Length = 248

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 12/63 (19%)

Query: 4  RKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITDNGF 61
            LSE  +N+       + P   I+ELI NS DA++S ++    +   G  FF   D+G 
Sbjct: 19 HTLSELAVNR-------KDPCEVIRELISNSYDAQASNIKIFPLLQYFGFIFF---DDGT 68

Query: 62 GMT 64
          G++
Sbjct: 69 GIS 71


>gi|157372145|ref|YP_001480134.1| integral membrane sensor signal transduction histidine kinase
           [Serratia proteamaculans 568]
 gi|157323909|gb|ABV43006.1| integral membrane sensor signal transduction histidine kinase
           [Serratia proteamaculans 568]
          Length = 468

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 30  LIENSL----DAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++    D    R+E  I      G  +  + DNG G+  E      +R  
Sbjct: 363 LLENAIKYAPDGG--RIEVNIRSLSPLGC-YITVRDNGPGINPEYHKRLFERFY 413


>gi|305666124|ref|YP_003862411.1| sensor histidine kinase [Maribacter sp. HTCC2170]
 gi|88707558|gb|EAQ99801.1| sensor histidine kinase [Maribacter sp. HTCC2170]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N +DA      +   I   GK     + D G G+   E         TSK
Sbjct: 287 LVKNGIDAMKGKGSIAIDIIPAGKYVNILVADTGGGIAKSEYHTIFNPGVTSK 339


>gi|311696597|gb|ADP99470.1| DNA gyrase subunit B-like protein [marine bacterium HP15]
          Length = 779

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 38/253 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           EL++NS+D   A   S +  +I         + DNG G+      EE   A +      H
Sbjct: 18  ELVDNSIDEALAGYCSEIGVIIHPD--ESVTVKDNGRGIPVDLHEEEGVSAAEVIMTVLH 75

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLM-SRPPQNNTGAQIAISGEKI 128
              K  D+   + + G  G       AL S       TL  +    N    Q    G   
Sbjct: 76  AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-------TLTLTIRRDNKVYEQTYTHGVPN 127

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
           + +  V     +  +V                 +   +++   +R +A     V    + 
Sbjct: 128 APLAAVGETDASGTKVH-----FIPSPETFTHIEFHYDILAKRLRELAFLNSGVRIRLTD 182

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +S + ++      G     +  +       N V    +  E  +     +   N     
Sbjct: 183 ERSGKEEV--FEYEGGLRAFVEHLNSNKTPINRVFHFNREREDGIAVEVSMQW-NDAFQE 239

Query: 249 QFYVFINGRTVQD 261
             Y F N    +D
Sbjct: 240 NIYCFTNNIPQRD 252


>gi|312888910|ref|ZP_07748472.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603]
 gi|311298651|gb|EFQ75758.1| DNA gyrase subunit B [Mucilaginibacter paludis DSM 18603]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I  G  +   + DNG G+ 
Sbjct: 45 VYEVVDNSIDEALAGHCDDIKVFIHKG--NSITVIDNGRGIP 84


>gi|238760033|ref|ZP_04621184.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236]
 gi|238701720|gb|EEP94286.1| DNA topoisomerase 4 subunit B [Yersinia aldovae ATCC 35236]
          Length = 631

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELIMCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +      ++F  S +   + ++ +++  A+  P V   F
Sbjct: 148 VQELQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERI 209
                 + +             E +
Sbjct: 204 KDLVNNTEQRWCYADGLTDYLMEAV 228


>gi|237756532|ref|ZP_04585059.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691306|gb|EEP60387.1| DNA gyrase, B subunit [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 812

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  +  ++   G     + D+G G+  +
Sbjct: 50 EIVDNAVDEAMAGYAKNITVILHQDG--SVTVEDDGRGIPVD 89


>gi|226364470|ref|YP_002782252.1| two-component histidine kinase [Rhodococcus opacus B4]
 gi|226242959|dbj|BAH53307.1| two-component histidine kinase [Rhodococcus opacus B4]
          Length = 446

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 31  IENSL-DA----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++N++ +A     ++ V   +    G +   + DNG G+   E  +  +R  
Sbjct: 337 LDNAIKNAVRHGGATAVTITLRAADGITTVVVDDNGSGVPEAERSVVFERFH 388


>gi|254483597|ref|ZP_05096821.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214036159|gb|EEB76842.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 883

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 30  LIENSLDA---ESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           LI N+ DA    + R E  +      G+    + DNG G+  E++    +   T+K+S
Sbjct: 774 LISNARDATIENAERPEIWVRAEAESGQVKIVVQDNGGGVKEEDLFKIFEPFWTTKLS 831


>gi|163751706|ref|ZP_02158925.1| DNA gyrase, B subunit [Shewanella benthica KT99]
 gi|161328445|gb|EDP99601.1| DNA gyrase, B subunit [Shewanella benthica KT99]
          Length = 781

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 76/247 (30%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +  +I   G     + D+G G+      EE   A +      H
Sbjct: 18  EVVDNSIDEALAGHCSEIVIIIHTDG--SVSVKDDGRGIPVDIHPEEGISAAEVIMTVLH 75

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L+ R        ++      +      
Sbjct: 76  AGGKFDDNSYKV-SGGLHGVGVSVVNALSQKLQLIIRRNG-----KLYEQFYTMGVPDAP 129

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               G            P+   F  + +   +++   +R ++     V       + NR 
Sbjct: 130 IKEIGDATSTGTELRFWPSHKTFTNNIEFHFDILVKRVRELSFLNSGVGIRLIDERDNRD 189

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N    +                +N G     + F 
Sbjct: 190 E--FFEYQGGISAFVDYLNINKTPVNKDVFHFIHERDDGITVEVAMQWNDGYQENIFCFT 247

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 248 NNIPQRD 254


>gi|126728825|ref|ZP_01744640.1| periplasmic sensor signal transduction histidine kinase [Sagittula
           stellata E-37]
 gi|126710755|gb|EBA09806.1| periplasmic sensor signal transduction histidine kinase [Sagittula
           stellata E-37]
          Length = 452

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 30  LIENSLDAES---SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN+L       +R++      G ++   + D+G G+  ++  +A +R  
Sbjct: 353 LVENALRHGGNGMTRIKVSTGKRGAEAVITVRDDGVGIPLDKADIAFRRFS 403


>gi|118594093|ref|ZP_01551440.1| Multi-sensor Signal Transduction Histidine Kinase [Methylophilales
           bacterium HTCC2181]
 gi|118439871|gb|EAV46498.1| Multi-sensor Signal Transduction Histidine Kinase [Methylophilales
           bacterium HTCC2181]
          Length = 706

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 15/60 (25%)

Query: 30  LIENSLDA--E--------SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ENS DA           ++++       G +  +  DNG G+  + I    + + TSK
Sbjct: 609 LLENSKDALIGEKKPSINIATKIR-----DGMAVIEFEDNGSGIPKKIISKIYEPYITSK 663


>gi|82913439|ref|XP_728644.1| Nif-specific regulatory protein [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23485100|gb|EAA20209.1| nif-specific regulatory protein [Plasmodium yoelii yoelii]
          Length = 937

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 23/97 (23%)

Query: 3   IRKLSEKIINQIAAGEIIE---------------RPSIAIKELIENSLD--AESSRVETV 45
           I  L+E++   +A+G ++E               R     K+LIEN++D  A S R E  
Sbjct: 302 ITLLTERL---LASGIVVEWVPTPVLPSLKGSENRLRSLFKQLIENAIDAMAHSRRRELR 358

Query: 46  IAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I    +       I D G G+ +       +   T+K
Sbjct: 359 ILTWTRDQLIHITIEDTGPGIPAGLRTQVFEPFFTTK 395


>gi|294631850|ref|ZP_06710410.1| DNA gyrase, B subunit [Streptomyces sp. e14]
 gi|292835183|gb|EFF93532.1| DNA gyrase, B subunit [Streptomyces sp. e14]
          Length = 707

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A     +E V+   G    ++ DNG G+  +
Sbjct: 59 EIIDNSVDEALAGVCDHIEVVLHDDG--SVEVRDNGRGIPVD 98


>gi|288818582|ref|YP_003432930.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787982|dbj|BAI69729.1| DNA gyrase B subunit [Hydrogenobacter thermophilus TK-6]
 gi|308752173|gb|ADO45656.1| DNA gyrase, B subunit [Hydrogenobacter thermophilus TK-6]
          Length = 786

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  +  VI   G     + D+G G+  +
Sbjct: 42 EILDNAVDEHVAGYAKNISVVIHEDG--SVSVEDDGRGIPVD 81


>gi|212213404|ref|YP_002304340.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212]
 gi|212011814|gb|ACJ19195.1| topoisomerase IV subunit B [Coxiella burnetii CbuG_Q212]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+    E I+NS+D   A  +  VE ++   G    ++ D+G GM  +         + 
Sbjct: 42  RPNHLAHEAIDNSVDEAIAGFAQNVEVILYKDG--SLEVIDDGRGMPIDVHPEHKLTGVE 99

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H  +K S      ++ G  G  +  + A+S  LT+  +             GEK
Sbjct: 100 LILTRLHAGAKFSTKTYE-YSGGLHGVGISVVNALSKKLTVQVK-KDGKIYQMDFAHGEK 157

Query: 128 ISSVRPVAMN----PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK-- 181
            S +RPV        GT +             ++  S +   + +   +R  A+  P   
Sbjct: 158 TSKLRPVGSCNKSESGTSIHFW-------PDSHYFDSVKFWVSALKHTMRAKAVLCPGLT 210

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           V F              +       + +  
Sbjct: 211 VHFIDENTGQRLQWYYAEGLKTYLADSLRD 240


>gi|86148731|ref|ZP_01067006.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222]
 gi|85833480|gb|EAQ51663.1| DNA topoisomerase IV subunit B [Vibrio sp. MED222]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 77/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
           ERP+   +E+I+NS+D   A  + +++ V+        ++TD+G GM  +         +
Sbjct: 30  ERPNHLAQEVIDNSVDEALAGHAKKIKVVLHAD--QSLEVTDDGRGMPVDIHPEKGISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S++     + G  G  +  + A+S  + +  R          +   +
Sbjct: 88  ELILTKLHSGGKFSNNNYK-FSGGLHGVGISVVNALSKRVEVTVRRDGQVHEIALEGGHA 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S +     + + +R  A+  P + 
Sbjct: 147 VTDLTVTGTCGHRNTGTTVHFW-------PDPKYFDSSKFSVLRLINNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TF  +     + +         + +++
Sbjct: 200 ITF--VDKVGGEEHKWFYEDGLKDYLAE 225


>gi|325123890|gb|ADY83413.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus PHEA-2]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|319941584|ref|ZP_08015910.1| DNA topoisomerase [Sutterella wadsworthensis 3_1_45B]
 gi|319804954|gb|EFW01796.1| DNA topoisomerase [Sutterella wadsworthensis 3_1_45B]
          Length = 655

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 23/146 (15%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           + P   I+E+I+N+ D   A    R+   +A  G     + D+G G+      EE    +
Sbjct: 32  DNPLHIIQEVIDNASDEVLAGYGKRISVEVAADG--SVTVEDDGRGIPTGMHPEEHAPVL 89

Query: 69  PMAVQR-HCTSKISD-DFSNIHTF--GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
            +   R H   K +  D S  +TF  G  G  +    A+S   +++              
Sbjct: 90  EIVFTRLHAGGKFAKADGSGPYTFAGGLHGVGVSVTNALSKHLVVTVWRDGQEATMGFRD 149

Query: 125 GE-----KISSVRPVAMNPGTIVEVR 145
           G      +I          GT V V 
Sbjct: 150 GFVSEPLEIKKSSRPKSRTGTRVTVW 175


>gi|299768369|ref|YP_003730395.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1]
 gi|298698457|gb|ADI89022.1| DNA topoisomerase IV subunit B [Acinetobacter sp. DR1]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|293610546|ref|ZP_06692846.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826890|gb|EFF85255.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|262280518|ref|ZP_06058302.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202]
 gi|262258296|gb|EEY77030.1| topoisomerase IV subunit B [Acinetobacter calcoaceticus RUH2202]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 29 TRPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|225848548|ref|YP_002728711.1| DNA gyrase subunit beta [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644043|gb|ACN99093.1| DNA gyrase, B subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 809

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  +  +I   G     + D+G G+  +
Sbjct: 47 EILDNAVDEAMAGYAKNITVIIHQDG--SVTVEDDGRGIPVD 86


>gi|225568376|ref|ZP_03777401.1| hypothetical protein CLOHYLEM_04453 [Clostridium hylemonae DSM
           15053]
 gi|225162824|gb|EEG75443.1| hypothetical protein CLOHYLEM_04453 [Clostridium hylemonae DSM
           15053]
          Length = 345

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 21  ERPSIAIKELIENSLD--AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           E  S  +K    N+ D   +   V              + DNG G+  E++    +R   
Sbjct: 240 EALSNIVK----NAFDHTEQGDTVSIEWKQFASAVQITVKDNGSGIHPEDLYYIFKRFYR 295

Query: 78  SKISDD 83
           S+ S D
Sbjct: 296 SRFSKD 301


>gi|206603337|gb|EDZ39817.1| DNA gyrase, B subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 818

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)

Query: 20  IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------S 65
           I+     + EL++NS+D   A   S +   I         + DNG G+           +
Sbjct: 38  IDGLHHLVYELVDNSVDEALAGHCSEIHVTIHPD--RSVTVADNGRGIPTGMHAEQKRSA 95

Query: 66  EEIPMAVQRHCTSKISDDFSNIH 88
            E+ + V  H   K +++   + 
Sbjct: 96  AEVVLTVL-HAGGKFNNNLYKVS 117


>gi|145297604|ref|YP_001140445.1| DNA topoisomerase IV subunit B [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850376|gb|ABO88697.1| DNA topoisomerase IV, B subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 631

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 30/201 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +  +E  +        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHARTLEVTLFED--QSLEVIDDGRGMPVDIHPEEGVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R      +   +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSDRVEVTVRRDGQVYDIAFERGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
             ++++        N GT V           + ++  S +     +  +++  A+  P +
Sbjct: 146 KVQELTITGTCGRRNTGTRVRFW-------PQASYFDSPRFSVTKLEHLLKAKAVLCPGL 198

Query: 183 SFTFSTIKSNRYKMNFQSTNG 203
           +  F   K+   K+ +   +G
Sbjct: 199 TIKF-LDKNTGIKLEWCYEDG 218


>gi|115607076|gb|ABJ16352.1| gyrase B [Leptospirillum ferriphilum]
          Length = 731

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 17/83 (20%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------S 65
          I+     + EL++NS+D   A   S +   I         + DNG G+           +
Sbjct: 10 IDGLHHLVYELVDNSVDEALAGHCSEIHVTIHPD--RSVTVADNGRGIPTGMHAEQKRSA 67

Query: 66 EEIPMAVQRHCTSKISDDFSNIH 88
           E+ + V  H   K +++   + 
Sbjct: 68 AEVVLTVL-HAGGKFNNNLYKVS 89


>gi|90420488|ref|ZP_01228395.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1]
 gi|90335216|gb|EAS48969.1| DNA gyrase, subunit B [Aurantimonas manganoxydans SI85-9A1]
          Length = 811

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATHVTVTLNPEG--SCTVTDNGRGIPTD 91


>gi|67809845|gb|AAY81979.1| DNA gyrase beta subunit [Wolbachia pipientis]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 23 VYEVIDNAIDESLAGYCDKIEVSINKDG--SVSVTDNGRGIPTD 64


>gi|324505634|gb|ADY42418.1| Heat shock protein 75 kDa [Ascaris suum]
          Length = 680

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 66/209 (31%), Gaps = 47/209 (22%)

Query: 27  IKELIENSLDA-----------E-----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           I+EL+ N+ DA                 +  ++       K      DNG GM  E++  
Sbjct: 76  IRELVSNASDALEKRRCVHLTSGDDTNVAYEIKITTDESAKKLVF-EDNGIGMDREDLVK 134

Query: 71  AVQRHCT--------------SKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQN 115
            +    T              SK +   S     G  G    S   V++ +T+ +R   +
Sbjct: 135 CL---GTIAKSGSKEFMDEQKSKEASKASAESIIGQFGVGFYSAFMVANSVTVSTRKEGS 191

Query: 116 NTGAQIAISGEKISSVRPVAM-NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRR 174
           N G     +G    S+      N GT VE+               SE  +   + DVI +
Sbjct: 192 NVGYIWRWNGADEYSIEETDALNIGTKVEIE--------LKPGDASEFAKPQRVIDVINK 243

Query: 175 MAIAYPKVSFTFSTIKSNRYKMNFQSTNG 203
            +     ++   +        +N   T  
Sbjct: 244 YSYF---ITLPITVNGERVNTLNAIWTMN 269


>gi|320195188|gb|EFW69817.1| Topoisomerase IV subunit B [Escherichia coli WV_060327]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  ++SF
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEISF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|317474758|ref|ZP_07934032.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909439|gb|EFV31119.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 640

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 76/256 (29%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 37  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVNIE 95

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 96  DN--LRVSVRDYGRGIPQGKLVEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 151

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S         ++     +   ++       T      +FF     L    S
Sbjct: 152 ----RFEVRSYRDG-----KVRTVIFEKGVLQSDVTEDSTEENGTYIFFEPDNTLFLNYS 202

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            Q +   +  ++R        ++F         +     +   +        I  + GED
Sbjct: 203 FQNQF--VETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMTSEGLYDIVHLKGED 260

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 261 IEIAFTHTNQYGEEYY 276


>gi|319791424|ref|YP_004153064.1| histidine kinase [Variovorax paradoxus EPS]
 gi|315593887|gb|ADU34953.1| histidine kinase [Variovorax paradoxus EPS]
          Length = 644

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDA--ESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
               +  L+ N++DA  ++      I      G+   +++D G G+  + +P   +   T
Sbjct: 525 LGSVLVNLMRNAIDAMQDAPSRTLRIEARPREGRVILRVSDTGPGIPQDILPRLFEPFVT 584

Query: 78  SK 79
           SK
Sbjct: 585 SK 586


>gi|226942531|ref|YP_002797604.1| C4-dicarboxylate sensory histidine protein kinase, two component
           DctB2 [Azotobacter vinelandii DJ]
 gi|226717458|gb|ACO76629.1| C4-dicarboxylate sensory histidine protein kinase, two component;
           DctB2 [Azotobacter vinelandii DJ]
          Length = 603

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSR-------VETVIAGGGKSFFQ 55
           IR L E  +  + AGE   R    +  L+ N+LD+ + R       + T +   G+    
Sbjct: 467 IRDLPEATLW-VQAGE--TRLRQVLGNLLANALDSLAERAPPRRLWLTTRLLDDGRISLS 523

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           + DNG G ++E +  A +   T+K
Sbjct: 524 LRDNGPGFSAEALERAREPFYTTK 547


>gi|253698660|ref|YP_003019849.1| DNA gyrase B subunit [Geobacter sp. M21]
 gi|251773510|gb|ACT16091.1| DNA gyrase, B subunit [Geobacter sp. M21]
          Length = 796

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + EL++N++D   A     V+ +I   G     + DNG G+ ++
Sbjct: 43 VYELVDNAIDEALAGYCDAVQVIIHLDG--SVTVEDNGRGIPTD 84


>gi|197116406|ref|YP_002136833.1| DNA gyrase subunit B [Geobacter bemidjiensis Bem]
 gi|197085766|gb|ACH37037.1| DNA gyrase, B subunit [Geobacter bemidjiensis Bem]
          Length = 796

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + EL++N++D   A     V+ +I   G     + DNG G+ ++
Sbjct: 43 VYELVDNAIDEALAGYCDAVQVIIHLDG--SVTVEDNGRGIPTD 84


>gi|312138243|ref|YP_004005579.1| two component system sensor kinase phor [Rhodococcus equi 103S]
 gi|37813699|gb|AAR04622.1| PhoR [Rhodococcus equi]
 gi|311887582|emb|CBH46894.1| two component system sensor kinase PhoR [Rhodococcus equi 103S]
          Length = 464

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 22  RPSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N+LD   A +  V   +   G     ++ D G G+   +     +R   
Sbjct: 357 RLRQVVGNLVGNALDHTPAGAD-VTVRVGTDGADAVVEVADTGPGLAEGDAARVFERFY- 414

Query: 78  SKISDDFSNIHTFGFRGEALPSIGAV 103
                D S   T G  G  L  + A+
Sbjct: 415 ---RADASRTRTSGGSGLGLSIVAAI 437


>gi|51598690|ref|YP_072878.1| DNA gyrase, subunit B [Borrelia garinii PBi]
 gi|51573261|gb|AAU07286.1| DNA gyrase, subunit B [Borrelia garinii PBi]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.054,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDRIDVVINLD--NTITVIDNGRGIPTD 78


>gi|325279486|ref|YP_004252028.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311295|gb|ADY31848.1| DNA gyrase, B subunit [Odoribacter splanchnicus DSM 20712]
          Length = 654

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 15/57 (26%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
          + E+++NS+D   A     ++  I     +   + DNG G+          RH  SK
Sbjct: 46 VYEVVDNSIDEALAGFCDHIQVTINED--NSISVRDNGRGIP-------TARH--SK 91


>gi|321401256|gb|ADW83039.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 83


>gi|321401254|gb|ADW83038.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 83


>gi|321401252|gb|ADW83037.1| DNA gyrase subunit B [Leptospira borgpetersenii]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 83


>gi|306823611|ref|ZP_07456986.1| sensor histidine kinase [Bifidobacterium dentium ATCC 27679]
 gi|309802895|ref|ZP_07696996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553318|gb|EFM41230.1| sensor histidine kinase [Bifidobacterium dentium ATCC 27679]
 gi|308220362|gb|EFO76673.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 456

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 25  IAIKELIENSLDAES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN+++     + V   I   GGK   ++ D G G+ +  +    +R  
Sbjct: 323 TAVKNLVENAVNYSPMNTTVAVGIGHEGGKVTIRVVDQGIGIPASSLDRIFERFY 377


>gi|255099934|ref|ZP_05328911.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255305823|ref|ZP_05349995.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 24  SIAIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           S  +  L++N L A  ++ +++  +         ++ D+G G+  E +P   +R
Sbjct: 207 SRVVNNLVQNVL-AHSKARQIKITMSEDSRMVLLRVEDDGVGIARENLPHIFER 259


>gi|221640231|ref|YP_002526493.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides KD131]
 gi|332559237|ref|ZP_08413559.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides WS8N]
 gi|221161012|gb|ACM01992.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides KD131]
 gi|332276949|gb|EGJ22264.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides WS8N]
          Length = 651

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +         + DNG G+  +
Sbjct: 47 VAEILDNSMDEAVAGHATRIEVELHAD--HSVTVRDNGRGIPVD 88


>gi|206563235|ref|YP_002233998.1| two-component regulatory system sensor kinase protein [Burkholderia
           cenocepacia J2315]
 gi|198039275|emb|CAR55240.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
          Length = 474

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   ++  G      + DNG G+ ++E     +R  
Sbjct: 368 LIDNAIRYAGDRAVITVRVSRDGADARLDVIDNGPGIPADERDAVFERFH 417


>gi|170735655|ref|YP_001776915.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169817843|gb|ACA92425.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 474

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   ++  G      + DNG G+ ++E     +R  
Sbjct: 367 LIDNAIRYAGDRAVITVRVSRDGADARLDVIDNGPGIPADERDAVFERFH 416


>gi|116329807|ref|YP_799525.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116123496|gb|ABJ74767.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 83


>gi|116326860|ref|YP_796580.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116119604|gb|ABJ77647.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 83


>gi|108946660|gb|ABG23678.1| gyrase subunit B [Leptospira weilii]
 gi|108946674|gb|ABG23685.1| gyrase subunit B [Leptospira weilii]
 gi|108946676|gb|ABG23686.1| gyrase subunit B [Leptospira weilii]
 gi|108946678|gb|ABG23687.1| gyrase subunit B [Leptospira weilii]
          Length = 136

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 69


>gi|160881552|ref|YP_001560520.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160430218|gb|ABX43781.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 513

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)

Query: 32  ENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           +N++     D   S +   I  G K    I D G G+  EE+     +   SK+ 
Sbjct: 411 DNAIKFSKED---STIYISITRGEKLRISIRDEGTGIEKEELSSIFDKFYKSKLR 462


>gi|94541036|gb|ABF31188.1| DNA gyrase subunit B [Leptospira weilii serovar Topaz]
          Length = 158

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 37 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 78


>gi|60459466|gb|AAX20069.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar
          Tarassovi]
 gi|60459472|gb|AAX20072.1| DNA gyrase subunit B [Leptospira weilii serovar Celledoni]
 gi|60459474|gb|AAX20073.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Ballum]
 gi|60459476|gb|AAX20074.1| DNA gyrase subunit B [Leptospira borgpetersenii serovar Javanica]
          Length = 141

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIRISILPNNI--IEVKDNGRGIPVD 69


>gi|77464346|ref|YP_353850.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides 2.4.1]
 gi|77388764|gb|ABA79949.1| DNA topoisomerase II/DNA gyrase, subunit B [Rhodobacter sphaeroides
           2.4.1]
          Length = 663

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++R+E  +         + DNG G+  +
Sbjct: 59  VAEILDNSMDEAVAGHATRIEVELHAD--HSVTVRDNGRGIPVD 100


>gi|42783972|ref|NP_981219.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
 gi|42739902|gb|AAS43827.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  ++  +        Q+ D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITIKVTVEDA--IIVQVKDEGCGIPKDKIPKLNEAFYTTK 365


>gi|126463188|ref|YP_001044302.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17029]
 gi|126104852|gb|ABN77530.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 663

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++R+E  +         + DNG G+  +
Sbjct: 59  VAEILDNSMDEAVAGHATRIEVELHAD--HSVTVRDNGRGIPVD 100


>gi|294815533|ref|ZP_06774176.1| Two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443883|ref|ZP_08218617.1| two-component sensor [Streptomyces clavuligerus ATCC 27064]
 gi|294328132|gb|EFG09775.1| Two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
          Length = 571

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 10  IINQIAAGE-----IIE--RPSIAIKELIENSLDAESSR----VETVIAGGGKSFF-QIT 57
           +  +IA G      +++       +  L++N++DA +      +E  ++  G++   ++ 
Sbjct: 408 VSLRIAPGTLLPDRVVDPRGLVTVLGNLVDNAMDAAAGSAEPGIEVELSSEGRTAVLRVA 467

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98
           D G G+  E+         T+K       +   G RG  L 
Sbjct: 468 DTGPGVPPEQREQIFTEGWTTK------ELPAHGKRGLGLA 502


>gi|225677156|ref|ZP_03788155.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
          uniraptor]
 gi|225590823|gb|EEH12051.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Muscidifurax
          uniraptor]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 54 VYEVVDNAIDESLAGYCDKIEVSINADG--SVSVTDNGRGIPTD 95


>gi|254454206|ref|ZP_05067643.1| periplasmic sensor signal transduction histidine kinase
           [Octadecabacter antarcticus 238]
 gi|198268612|gb|EDY92882.1| periplasmic sensor signal transduction histidine kinase
           [Octadecabacter antarcticus 238]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 29  ELIENSLDAESSRVE---TVIAGGG---KSFFQITDNGFGMTSEEIPMAVQR 74
           EL+ N +D  +++       I+ GG   + F Q++DNG G++  E+   ++R
Sbjct: 282 ELLGNLID-NATKWTGDKIAISAGGTAIRGFIQVSDNGPGISEAELASVMRR 332


>gi|254391063|ref|ZP_05006271.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
 gi|197704758|gb|EDY50570.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
           27064]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 10  IINQIAAGE-----IIE--RPSIAIKELIENSLDAESSR----VETVIAGGGKSFF-QIT 57
           +  +IA G      +++       +  L++N++DA +      +E  ++  G++   ++ 
Sbjct: 179 VSLRIAPGTLLPDRVVDPRGLVTVLGNLVDNAMDAAAGSAEPGIEVELSSEGRTAVLRVA 238

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98
           D G G+  E+         T+K       +   G RG  L 
Sbjct: 239 DTGPGVPPEQREQIFTEGWTTK------ELPAHGKRGLGLA 273


>gi|262200051|ref|YP_003271259.1| DNA gyrase subunit B [Gordonia bronchialis DSM 43247]
 gi|262083398|gb|ACY19366.1| DNA gyrase, B subunit [Gordonia bronchialis DSM 43247]
          Length = 685

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 15/54 (27%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  +S+VE  +   GG    ++ D+G G+   ++      H T
Sbjct: 56 EVVDNSVDEAMAGYASKVEVTLLEDGG---VEVVDDGRGI-PTDM------HAT 99


>gi|189353557|ref|YP_001949184.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189337579|dbj|BAG46648.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 19/66 (28%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGKSF------FQITDNGFGMTSEEIPM 70
           IER    ++ L+ N++   DA   R+       G  +       +I D G G+  +++ +
Sbjct: 344 IER---VVRNLVSNAVRYTDAG--RIVV-----GCRYRGAHIAIEIRDTGRGIARDQLEL 393

Query: 71  AVQRHC 76
             + + 
Sbjct: 394 VFREYY 399


>gi|156362222|ref|XP_001625679.1| predicted protein [Nematostella vectensis]
 gi|156212523|gb|EDO33579.1| predicted protein [Nematostella vectensis]
          Length = 821

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 49/495 (9%), Positives = 112/495 (22%), Gaps = 66/495 (13%)

Query: 106 LTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFF--TIPARLNFLKSEQV 163
           LTL +  P  N+          +++  P   +          ++  T+     +  S + 
Sbjct: 307 LTLATNHPYYNSTRHYPYYCLTLATNHPYYNSTR-----HYPYYCLTLATNHPYYNSTRH 361

Query: 164 ETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE 223
                  +             +          +       N              N+   
Sbjct: 362 YPYYCLTLATNHPYYN-----STRHYPYYCLTLATNHPYYNSTRHYPYYCLTLAANHPYY 416

Query: 224 LNEKSNEITLQGYTGIPTFNRGNANQFYVFIN---GRTVQD-----KFILSTIRTAYAET 275
            + +              +     +  +  +         +      +   T+   +   
Sbjct: 417 NSTRHYPYYCLTLAANHPYYNSTRHYPHYCLTLAANHPYYNSTRHYPYYCLTLAANHPYY 476

Query: 276 IPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSS 335
                YP   L L  +    +   H     +         N         +    ++ + 
Sbjct: 477 NSTRHYPYYCLTLATNHPYYNFTRHYPYYCLTLATNHPYYNSTRHYPYYCL---TLAANH 533

Query: 336 VLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDP 395
                     +      T+ P Y  +       L L  N    N          +   + 
Sbjct: 534 PYYNSTRHYPYYCLTLATNHPYYNFTHHYPYYCLTLATNHPYYNSTRHYPYYCLTLAANH 593

Query: 396 VEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAH--ERLIFEKMRQDFNSTKIT 453
              +   HY         +  Y  S          +  +    +     + + FN     
Sbjct: 594 PYYNSTRHYPYYCLTLATNHPYYNSTRHHPYYCHHRQPSQVVRKPALYVLIKQFNCKDHV 653

Query: 454 SQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLL 513
               L  ++           +E  E L  +G        +   +               +
Sbjct: 654 VLDALLQQMS--SSYNWKHRLEAAELLIFIG------SRDVFKVMS----------EDEV 695

Query: 514 RDIIDEIIDSSTTYTLQDRIENILATM-----ACYGS----------IRSGRKMQSI--- 555
            D++++++       L+ +I   LA M     AC  +          +R    +      
Sbjct: 696 FDVLEKLLWDHANKELRLKISEALAAMGLRQRACALALRRLEDPKEEVRGRAVISLATLG 755

Query: 556 -----EMNRLLREME 565
                EM  LL  +E
Sbjct: 756 MKGTKEMKALLDLLE 770


>gi|148255370|ref|YP_001239955.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1]
 gi|146407543|gb|ABQ36049.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. BTAi1]
          Length = 687

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  +TDNG G+  +
Sbjct: 80  EVIDNSMDEALAGHATFIEVELDAQG--FLTVTDNGRGIPVD 119


>gi|161520266|ref|YP_001583693.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|160344316|gb|ABX17401.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
          Length = 663

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 19/66 (28%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGKSF------FQITDNGFGMTSEEIPM 70
           IER    ++ L+ N++   DA   R+       G  +       +I D G G+  +++ +
Sbjct: 413 IER---VVRNLVSNAVRYTDAG--RIVV-----GCRYRGAHIAIEIRDTGRGIARDQLEL 462

Query: 71  AVQRHC 76
             + + 
Sbjct: 463 VFREYY 468


>gi|94265148|ref|ZP_01288912.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454387|gb|EAT04688.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 473

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 7   SEKIINQIAAGEIIERP---SIAIKELIENSLDAESSRVETVIAGG---GKSFFQITDNG 60
            + I++ IA    +  P   S  ++ L++N+L+A        +  G   G+ +F + D G
Sbjct: 359 PDPIVDPIA----VANPRTLSRIVRGLVKNALEASPDTAPVELEIGRRDGRLYFTVRDQG 414

Query: 61  FGMTSEEIPMAVQRHCTSK 79
            GM  E    A +   T+K
Sbjct: 415 HGMDEETRRRATEPFFTTK 433


>gi|226944972|ref|YP_002800045.1| periplasmic sensory histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
 gi|226719899|gb|ACO79070.1| periplasmic sensory histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
          Length = 423

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 20  IERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           ++  +      I N+++A     S R+   +    +     + D+G GMT E++ MA + 
Sbjct: 319 VQALNSV----IANAIEAMPRGGSLRIRVAVDALERRLRLTVGDSGDGMTPEQMAMAFKA 374

Query: 75  HCTSK 79
             T+K
Sbjct: 375 FHTTK 379


>gi|315179146|gb|ADT86060.1| DNA topoisomerase IV subunit B [Vibrio furnissii NCTC 11218]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +++V+ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYATKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R      +   +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYDIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-- 180
               ++        N GT V              +  S       + + +R  A+  P  
Sbjct: 146 KVSDLTVTGTCGRRNRGTSVHFW-------PETKYFDSPNFSVTRLINNLRAKAVLCPGL 198

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           +++F+     +               E +
Sbjct: 199 EITFSDKVNNNEYRWFYEDGLKDYLAEGV 227


>gi|310287736|ref|YP_003938994.1| DNA gyrase subunit B [Bifidobacterium bifidum S17]
 gi|309251672|gb|ADO53420.1| DNA gyrase subunit B [Bifidobacterium bifidum S17]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 42 EIIDNAVDEALAGACDHITVTLHDDG--SVEVADNGRGIPVD 81


>gi|260771248|ref|ZP_05880175.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972]
 gi|260613845|gb|EEX39037.1| topoisomerase IV subunit B [Vibrio furnissii CIP 102972]
          Length = 602

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +++V+ ++        ++ D+G GM  +          
Sbjct: 6   TRPNHLGQEVIDNSVDEALAGYATKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 63

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R      +   +   
Sbjct: 64  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYDIAFEHGD 121

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP-- 180
               ++        N GT V              +  S       + + +R  A+  P  
Sbjct: 122 KVSDLTVTGTCGRRNRGTSVHFW-------PETKYFDSPNFSVTRLINNLRAKAVLCPGL 174

Query: 181 KVSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           +++F+     +               E +
Sbjct: 175 EITFSDKVNNNEYRWFYEDGLKDYLAEGV 203


>gi|253580748|ref|ZP_04858012.1| two-component sensor histidine kinase [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848119|gb|EES76085.1| two-component sensor histidine kinase [Ruminococcus sp. 5_1_39BFAA]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 30  LIENSL---DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN++   D   + +   +      +  QI DNG G+  EE+    +R   S
Sbjct: 190 LLENAVKYTDRGGT-ISICVKSYDLYTEIQIADNGRGIRQEEMTDIFKRFYRS 241


>gi|224283383|ref|ZP_03646705.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|311064623|ref|YP_003971348.1| DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|313140537|ref|ZP_07802730.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
 gi|310866942|gb|ADP36311.1| GyrB DNA gyrase subunit B [Bifidobacterium bifidum PRL2010]
 gi|313133047|gb|EFR50664.1| DNA gyrase subunit B [Bifidobacterium bifidum NCIMB 41171]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +   +   G    ++ DNG G+  +
Sbjct: 42 EIIDNAVDEALAGACDHITVTLHDDG--SVEVADNGRGIPVD 81


>gi|126737848|ref|ZP_01753578.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. SK209-2-6]
 gi|126721241|gb|EBA17945.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. SK209-2-6]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 17/93 (18%)

Query: 30  LIENSLDAESSRVETVIA--------GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           L+EN++      VE  +          G      + DNG G+    +P   +R       
Sbjct: 248 LVENAIKYGGDHVEVTLEFLERDRSLRGPAVQVTVRDNGQGIDPIHLPRLTERFY----R 303

Query: 82  DDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQ 114
            D       G  G  L     V H  ++SR   
Sbjct: 304 ADSHRSRELGGTGLGL---AIVKH--IISRHRG 331


>gi|126736573|ref|ZP_01752313.1| periplasmic sensor signal transduction histidine kinase
           [Roseobacter sp. CCS2]
 gi|126713886|gb|EBA10757.1| periplasmic sensor signal transduction histidine kinase
           [Roseobacter sp. CCS2]
          Length = 450

 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 30  LIENSLDAESSRVETVIAGG----GKSFFQITDNGFGMTSEEIPMA---VQRHCTSK--- 79
           L++N+L   +S  E  +  G    G+    ITD+G G+  EEI  A    QR  TSK   
Sbjct: 349 LLDNALKWAAS--EVQLKAGESADGQIMITITDDGPGIPKEEIAKATQSGQRLDTSKPGT 406

Query: 80  -----ISDDFSNIHTFG 91
                I+ D   IH +G
Sbjct: 407 GLGLAIAHDL--IHAYG 421


>gi|297833810|ref|XP_002884787.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330627|gb|EFH61046.1| hypothetical protein ARALYDRAFT_478355 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 38/257 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+++ V+         I+DNG G+   ++      H  T K  
Sbjct: 47  VYEILDNAIDEAQAGFASKIDVVLHSD--DSVSISDNGRGI-PTDL------HPATGK-- 95

Query: 82  DDFSNIHTF------------------GFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA 122
                + T                   G  G  L  + A+S  L ++ R        + +
Sbjct: 96  SALETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQKYS 155

Query: 123 ISGEKISSVRPVAMN--PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP 180
                 +    V      GT       +        F  + Q + N I   IR +A   P
Sbjct: 156 RGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGFALFTTAIQFDHNTIAGRIRELAFLNP 215

Query: 181 KVSFTFST-IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGI 239
           KV+ +           +  +             +  D       L  +           +
Sbjct: 216 KVTISLKKEDDDPERDLYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSL 275

Query: 240 PTFNRGNANQFYVFING 256
              +   ++    + N 
Sbjct: 276 QWCSDAYSDTMLGYANS 292


>gi|283836435|ref|ZP_06356176.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220]
 gi|291067809|gb|EFE05918.1| DNA topoisomerase IV, B subunit [Citrobacter youngae ATCC 29220]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGDK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLSEAVNGL 230


>gi|262373790|ref|ZP_06067068.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205]
 gi|262311543|gb|EEY92629.1| DNA topoisomerase IV, B subunit [Acinetobacter junii SH205]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADQICVTVYEDG--SLSVEDNGRGMPVD 76


>gi|291287631|ref|YP_003504447.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884791|gb|ADD68491.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAESSR--------VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NSLD  + R        +   I    K +   I DNG G+  E +    +   +SK
Sbjct: 536 LLNNSLDQLAHRDLTFDEKSIMIDIEPNIKGYRITIKDNGGGIAPEMLNKLFELFSSSK 594


>gi|254483322|ref|ZP_05096553.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148]
 gi|214036417|gb|EEB77093.1| DNA gyrase, B subunit [marine gamma proteobacterium HTCC2148]
          Length = 778

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   SR++ VI         ++D+G G+ +E
Sbjct: 18 EIVDNSIDEALAGHCSRIDIVIHPD--ESVTVSDDGRGIPTE 57


>gi|126698401|ref|YP_001087298.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|115249838|emb|CAJ67655.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 24  SIAIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           S  +  L++N L A  ++ +++  +         ++ D+G G+  E +P   +R
Sbjct: 209 SRVVNNLVQNVL-AHSKARQIKITMSEDSRMVLLRVEDDGVGIARENLPHIFER 261


>gi|111021967|ref|YP_704939.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
 gi|110821497|gb|ABG96781.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
          Length = 454

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 31  IENSL-DA----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++N++ +A     ++ V   +    G +   + DNG G+   E  +  +R  
Sbjct: 337 LDNAIKNAVRHGGATAVTITLRAADGITTVVVDDNGSGVPETERAVVFERFH 388


>gi|91218187|ref|ZP_01255135.1| two-component system sensor histidine kinase [Psychroflexus torquis
           ATCC 700755]
 gi|91183645|gb|EAS70040.1| two-component system sensor histidine kinase [Psychroflexus torquis
           ATCC 700755]
          Length = 447

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKSFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA     ++ +++   +         ++ DNG G+  + +        TSK
Sbjct: 354 LILNAVDACKNKDDA-KIKVFASQNTNRAIVLKVIDNGSGIPKDILENIFIPFFTSK 409


>gi|51245738|ref|YP_065622.1| Pho family two-component system sensor histidine kinase
           [Desulfotalea psychrophila LSv54]
 gi|50876775|emb|CAG36615.1| related to two-component system sensor histidine kinase (Pho
           family) [Desulfotalea psychrophila LSv54]
          Length = 602

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 40  SRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEA 96
           S +   +     G +    + D+G G+ +E +P   +R        D +     G  G  
Sbjct: 511 SEIRVEVLACEEGQEVSISVADDGCGIGAEHLPRVFERFY----RSDKARSRELGGTGLG 566

Query: 97  LP 98
           L 
Sbjct: 567 LA 568


>gi|27364066|ref|NP_759594.1| DNA topoisomerase IV subunit B [Vibrio vulnificus CMCP6]
 gi|37678772|ref|NP_933381.1| DNA topoisomerase IV subunit B [Vibrio vulnificus YJ016]
 gi|320157449|ref|YP_004189828.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O]
 gi|27360184|gb|AAO09121.1| DNA topoisomerase IV, B subunit [Vibrio vulnificus CMCP6]
 gi|37197513|dbj|BAC93352.1| topoisomerase IV, subunit B [Vibrio vulnificus YJ016]
 gi|319932761|gb|ADV87625.1| topoisomerase IV subunit B [Vibrio vulnificus MO6-24/O]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--K 181
              ++        N GT V              +  S       + + +R  A+  P  +
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDTKYFDSPNFSVTRLVNNLRAKAVLCPGLE 199

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           ++F+          +          E +
Sbjct: 200 ITFSDRVNGKEHQWLYQDGLKDYLIEGV 227


>gi|220930856|ref|YP_002507764.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
 gi|219992166|gb|ACL68769.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 73/244 (29%), Gaps = 23/244 (9%)

Query: 27  IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D A       +E +I  G      + DNG G+  +  P   +         
Sbjct: 47  VYEVVDNSIDEAMQGYCDLIEVIIKPGNI--ITVKDNGRGIPVDPHPKLKKPAVEVVLTV 104

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR 132
            H   K   D   + + G  G  +  + A+S  L +           Q    G  +  ++
Sbjct: 105 LHAGGKFGGDGYKV-SGGLHGVGVSVVNALSKWLEVEVCWRDGKVYHQKYNRGIPVYDLK 163

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            +    GT   +              +    +  ++   ++ +A     V       +  
Sbjct: 164 VIGECSGTGTTIS-----FKPDEEIFEDVNFKYKVLAQRLKELAFLNKGVRIILRDEREE 218

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             + +     G     +  +              +  +   +    I  +N G  +  + 
Sbjct: 219 EARQDEYCFEGGLVSFVKYLNKNKNPLFDEPFYLEEKDENREVEIAI-QYNDGYVDSIFT 277

Query: 253 FING 256
           F N 
Sbjct: 278 FANN 281


>gi|148264434|ref|YP_001231140.1| GAF sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397934|gb|ABQ26567.1| GAF sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 552

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 22/87 (25%)

Query: 6   LSEKIIN--QIAAGEIIERPSIAIKELIENSLDAES------SRVET----VIAGGGKSF 53
           L     N  QI   +++         LI N+ DA +        +E      +    +  
Sbjct: 430 LPRVTANGPQI--QQVLTNF------LI-NARDALADVERKEKIIEVATSLRVEDEKRWA 480

Query: 54  F-QITDNGFGMTSEEIPMAVQRHCTSK 79
              ++DNG G+  E +        TSK
Sbjct: 481 VLSVSDNGSGIAPENMSKIFTPFYTSK 507


>gi|86147178|ref|ZP_01065494.1| DNA gyrase subunit B [Vibrio sp. MED222]
 gi|218708101|ref|YP_002415722.1| DNA gyrase subunit B [Vibrio splendidus LGP32]
 gi|85835062|gb|EAQ53204.1| DNA gyrase subunit B [Vibrio sp. MED222]
 gi|218321120|emb|CAV17070.1| DNA gyrase subunit B [Vibrio splendidus LGP32]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I     S   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCNDIIVTIHED--SSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYSHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+   F  + +   +++   +R ++     VS      K    K
Sbjct: 159 DTDKTGTEIRF----WPSEETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-IDKREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           M+     G     +  +            +  S             +N G     Y F N
Sbjct: 213 MDHFEYEGGIQAFVEHLNTNKTPIIQKIFHFDSERDDGITVEVAMQWNDGYQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|315126263|ref|YP_004068266.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoalteromonas sp. SM9913]
 gi|315014777|gb|ADT68115.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoalteromonas sp. SM9913]
          Length = 493

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 23  PSIAIKELIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CT 77
               ++ L+ N++   D++   +E   +A        +TD+G G+  E           T
Sbjct: 383 LETVVRNLLSNAIKHHDSKEGTIEIRCVAENTLCHITVTDDGPGIPPEAYERIFSLFQTT 442

Query: 78  S 78
           S
Sbjct: 443 S 443


>gi|315223358|ref|ZP_07865217.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
          ochracea F0287]
 gi|314946689|gb|EFS98678.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga
          ochracea F0287]
          Length = 658

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 49 VYEVLDNSIDEALAGYCDTISVTINED--NSITVEDNGRGIPVD 90


>gi|291279402|ref|YP_003496237.1| hypothetical protein DEFDS_1011 [Deferribacter desulfuricans SSM1]
 gi|290754104|dbj|BAI80481.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 721

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+NS+   D++  +V   +    K     I DNG G+ SE++      +  SK
Sbjct: 622 LIQNSISAIDSDKGKVTVKLEEDDKYLYLSIKDNGVGIDSEDLQKIFLPYF-SK 674


>gi|266622703|ref|ZP_06115638.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288865568|gb|EFC97866.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 470

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC--TS 78
           R+      GG    Q+ DNG+GM  EEI     R+   TS
Sbjct: 389 RITVS---GGSPCIQVADNGYGMRPEEIKHLFDRYYRGTS 425


>gi|256820281|ref|YP_003141560.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271]
 gi|256581864|gb|ACU92999.1| DNA gyrase, B subunit [Capnocytophaga ochracea DSM 7271]
          Length = 658

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 49 VYEVLDNSIDEALAGYCDTISVTINED--NSITVEDNGRGIPVD 90


>gi|213964047|ref|ZP_03392290.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno]
 gi|213953329|gb|EEB64668.1| DNA gyrase, B subunit [Capnocytophaga sputigena Capno]
          Length = 658

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 49 VYEVLDNSIDEALAGYCDTISVTINED--NSITVEDNGRGIPVD 90


>gi|159036930|ref|YP_001536183.1| histidine kinase [Salinispora arenicola CNS-205]
 gi|157915765|gb|ABV97192.1| histidine kinase [Salinispora arenicola CNS-205]
          Length = 801

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 18/86 (20%)

Query: 16  AGEIIERPSIAIKELIENSLDAES-----SRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           AG ++   S  + ELIEN+L   S     + V       G  F  ++ D G GM +EE+ 
Sbjct: 510 AGRVVGDVSHLLAELIENAL---SFSPPQTEVRVRGESVGHGFAIEVEDRGLGMDAEELA 566

Query: 70  MAVQRHCTSKISDD----FSNIHTFG 91
            A ++     I+ D      N +  G
Sbjct: 567 AANEQ-----IASDQQFQLENANRLG 587


>gi|19909709|dbj|BAB87050.1| DNA gyrase subunit B [Ralstonia sp. E2]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I     +   I DNG G+  +
Sbjct: 10 EVLDNSIDEALAGYCTEIQVTIHTD--NSISIVDNGRGIPPD 49


>gi|320537025|ref|ZP_08037004.1| DNA gyrase, B subunit [Treponema phagedenis F0421]
 gi|320146100|gb|EFW37737.1| DNA gyrase, B subunit [Treponema phagedenis F0421]
          Length = 638

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N +D   A    R+  V+        ++ DNG G+  +
Sbjct: 40 VYEVVDNCIDEAMAGFCDRITVVLEKN--DIVRVEDNGRGIPVD 81


>gi|297184388|gb|ADI20504.1| signal transduction histidine kinase regulating c4-dicarboxylate
           transport system [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 158

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 30  LIENSLDA-ESSR---VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ N++DA ++S    +   I         + DNG G++  ++    +   T+K + D
Sbjct: 50  LLRNAIDAVKASENPEIVVSINSSDDIVLSVRDNGIGLS--DLDTLFEPFHTTKPAGD 105


>gi|291530733|emb|CBK96318.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
          [Eubacterium siraeum 70/3]
          Length = 185

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 31 IENSLDAESS--RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ++NS+ A +S   +   I       +   I D+G GM+  E+  AV    T
Sbjct: 13 VQNSIGARASLVEITVSIDTTADTLTVI-IRDDGRGMSEAELSRAVDPFYT 62


>gi|291527567|emb|CBK93153.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 29  ELIEN----SL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+EN    ++   +   + V   +   GGK+   + DNG G+  ++     +R  
Sbjct: 339 ELVENLCQNAIRYNNEGGT-VNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFY 393


>gi|291524415|emb|CBK90002.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 29  ELIEN----SL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+EN    ++   +   + V   +   GGK+   + DNG G+  ++     +R  
Sbjct: 339 ELVENLCQNAIRYNNEGGT-VNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFY 393


>gi|290474836|ref|YP_003467716.1| DNA topoisomerase IV subunit B [Xenorhabdus bovienii SS-2004]
 gi|289174149|emb|CBJ80936.1| DNA topoisomerase IV, subunit B [Xenorhabdus bovienii SS-2004]
          Length = 631

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 25/209 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  +E ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLAQEVIDNSVDEALAGHAKHIEVILHSD--QSLEVIDDGRGMPVDIHPEEKVSAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNT-GAQIAISG 125
            + + R H   K S+      + G  G  +  + A+S  + +  R        A  +   
Sbjct: 89  ELILTRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDSQVHQIAFESGDK 147

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS-- 183
            +   V        T   V   +       ++    +   + +T +++  A+  P V   
Sbjct: 148 VQELEVIGSCGKRNTGTSV-HFW----PDESYFDIPRFSASRLTHLLKAKAVLCPGVEIV 202

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
           F      + +             E ++ +
Sbjct: 203 FKDKLAGTEQKWCYADGLTDYLLEAVNGL 231


>gi|291612734|ref|YP_003522891.1| integral membrane sensor signal transduction histidine kinase
           [Sideroxydans lithotrophicus ES-1]
 gi|291582846|gb|ADE10504.1| integral membrane sensor signal transduction histidine kinase
           [Sideroxydans lithotrophicus ES-1]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 19  IIERP--SIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           ++ERP   I I  LI N+L   +A    V   +         + D G GM  EE+  A++
Sbjct: 315 VVERPLLEIVIGNLIRNALFHTEAG--VVSLKLED---KRLVVQDTGAGMRPEELERALE 369

Query: 74  RHC--TS 78
           R+   TS
Sbjct: 370 RYYKGTS 376


>gi|239994107|ref|ZP_04714631.1| DNA topoisomerase IV subunit B [Alteromonas macleodii ATCC 27126]
          Length = 631

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 25/206 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S ++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHASNIKVILHED--QSLEVIDDGRGMPVDIHPEEGISGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R   +N       +G
Sbjct: 88  ELIL-CKLHAGGKFSNKNYA-FSGGLHGVGISVVNALSTRVEVTIR-RDSNVYQIAFENG 144

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
           +K+  ++ +          R  F+  P    +  S +   + +   +R  A+  P +   
Sbjct: 145 DKVEDLQVIDTCGKRNTGTRVHFWPDP---QYFDSAKFSASRLVHNLRAKAVLSPGLRIR 201

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQ 211
           F        +           + + Q
Sbjct: 202 F--DNKITKESQEWYYEDGLKDYLYQ 225


>gi|238925291|ref|YP_002938808.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
 gi|238876967|gb|ACR76674.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 29  ELIEN----SL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+EN    ++   +   + V   +   GGK+   + DNG G+  ++     +R  
Sbjct: 339 ELVENLCQNAIRYNNEGGT-VNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFY 393


>gi|237729956|ref|ZP_04560437.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2]
 gi|226908562|gb|EEH94480.1| DNA topoisomerase IV subunit B [Citrobacter sp. 30_2]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGDK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDEVNNSEQRWCYQDGLNDYLSEAVNGL 230


>gi|222082353|ref|YP_002541718.1| two-component sensor histidine kinase protein regulating
           C4-dicarboxylate transport system [Agrobacterium
           radiobacter K84]
 gi|221727032|gb|ACM30121.1| two-component sensor histidine kinase protein regulating
           C4-dicarboxylate transport system [Agrobacterium
           radiobacter K84]
          Length = 506

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDAESSR----VETVIAGGGKS-FFQITDNGF 61
            + + N++   +++         L++N+LDA + R    V   I G   S    + DNG 
Sbjct: 395 PDVLANRVQLEQVLVN-------LLQNALDAVAGRPDPRVVLSIDGDETSAMLVVADNGP 447

Query: 62  GMTSEEIPMAVQRHCTSK 79
           G+  E          TSK
Sbjct: 448 GIDPELGEKIFSPFVTSK 465


>gi|167763905|ref|ZP_02436032.1| hypothetical protein BACSTE_02287 [Bacteroides stercoris ATCC
           43183]
 gi|167698021|gb|EDS14600.1| hypothetical protein BACSTE_02287 [Bacteroides stercoris ATCC
           43183]
          Length = 662

 Score = 44.3 bits (103), Expect = 0.057,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 77/256 (30%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 59  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVNIE 117

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 118 EN--LRVSVRDYGRGIPQGKLVEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 173

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S         ++  +  +   ++       T      +FF     L    S
Sbjct: 174 ----RFEVRSYRDG-----KVRTAIFEKGVLQSDLTEDSTEENGTYIFFEPDNTLFTNYS 224

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            Q +   +  ++R        ++F         +     +   +        I  + GED
Sbjct: 225 FQNQF--VETLLRNYTYLNTGLTFIYNGQRIISRHGLEDLLKDNMTSEGLYDIVHLKGED 282

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 283 IEIAFTHTNQYGEEYY 298


>gi|307316770|ref|ZP_07596212.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306897392|gb|EFN28136.1| histidine kinase [Sinorhizobium meliloti AK83]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 23/90 (25%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAG--G 49
           IR  L       + N+I       R    +  L++N+L+A       +  ++       G
Sbjct: 522 IRIDLPPDGLQALGNRI-------RLEQVLINLLQNALEAIGDSEDGA--IQVRCEEAAG 572

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           G +   + DNG G+ ++          TSK
Sbjct: 573 GIAL-TVADNGPGIAADVREELFAPFNTSK 601


>gi|284039430|ref|YP_003389360.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283818723|gb|ADB40561.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 455

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA-ESS---RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++++   +    +       G     ++TDNG G+  E +        T+K
Sbjct: 363 LIKNAVESLGKTPNPAIRIEAEAMGTRVVIRVTDNGAGIEPEALEQIFIPFYTTK 417


>gi|229489158|ref|ZP_04383024.1| chaperone protein HtpG [Rhodococcus erythropolis SK121]
 gi|229324662|gb|EEN90417.1| chaperone protein HtpG [Rhodococcus erythropolis SK121]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 45/187 (24%)

Query: 25  IAIKELIENSLDAESS------------------RVETVIAGGGKSFFQITDNGFGMTSE 66
             ++ELI N+ DA                      +E  I    ++   I DNG GM+ +
Sbjct: 31  SFLRELISNASDALDKLRLESYQDKDLNVDVSDLHIEIDIDKAARTL-TIRDNGIGMSRD 89

Query: 67  EIPMAVQRHCTS-------KISDDFSNIHT--------FGFRGEALPSIGAVS-HLTLMS 110
           E+   +     S       K+ +      +         GF      S   V+  +TL++
Sbjct: 90  EVVDLIGTLAKSGTAEVRRKLKEAKDAAASEELIGQFGIGF-----YSTFMVADKVTLLT 144

Query: 111 RPPQNNTGAQIAISGEKISSVRPVA-MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           R    +   +   +GE   ++  V     G+ V        +P        +      I 
Sbjct: 145 RRAGEDHATRWESTGEGTYTLEHVNEAPQGSSVT----LHLMPEDSENGLHDYTSEWKIK 200

Query: 170 DVIRRMA 176
           +++++ +
Sbjct: 201 ELVKKYS 207


>gi|228993523|ref|ZP_04153432.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228999560|ref|ZP_04159138.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|229007117|ref|ZP_04164743.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228754162|gb|EEM03581.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228760271|gb|EEM09239.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228766238|gb|EEM14883.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++    D     +E  +        +I D G G+  +++P   +   T+K
Sbjct: 314 LIKNAIESMQDGGIIIIEVTLKDA--MIIRIKDEGCGIPKDKMPKLSEAFYTTK 365


>gi|153955002|ref|YP_001395767.1| chaperone-related protein [Clostridium kluyveri DSM 555]
 gi|219855444|ref|YP_002472566.1| hypothetical protein CKR_2101 [Clostridium kluyveri NBRC 12016]
 gi|146347860|gb|EDK34396.1| Chaperone-related protein [Clostridium kluyveri DSM 555]
 gi|219569168|dbj|BAH07152.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1013

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 15/52 (28%)

Query: 28  KELIENSLDAES-----------SRVETVI---AGGGKSFFQITDNGFGMTS 65
           +ELI+NS+DA +             +          G  +F+I DNG GM  
Sbjct: 643 RELIQNSIDATAVREAKEEIDFMKSIRIEFGKDKNAGL-YFKIKDNGTGMDR 693


>gi|115373251|ref|ZP_01460551.1| Two-component system protein A [Stigmatella aurantiaca DW4/3-1]
 gi|310824488|ref|YP_003956846.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369697|gb|EAU68632.1| Two-component system protein A [Stigmatella aurantiaca DW4/3-1]
 gi|309397560|gb|ADO75019.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 22  RPSIAIKELIENSLDAESSR---VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+L   + +   ++  +   G +   + D G G+  E+     +R  
Sbjct: 281 RLEQVVTHLLSNALKYGAGKPVHIQVSVEE-GSALLAVRDEGIGIEEEQQARVFERFA 337


>gi|219667298|ref|YP_002457733.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Desulfitobacterium hafniense DCB-2]
 gi|219537558|gb|ACL19297.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Desulfitobacterium hafniense DCB-2]
          Length = 541

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 30  LIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT--SKIS 81
           LI+N+ DA     + S V   +     K    + DNG G+  E  PM      T  SK +
Sbjct: 427 LIDNAYDAVEKHPDHSSVFISLKQDESKIEILVKDNGAGIPEENFPMLFNPGFTTKSKGT 486

Query: 82  D-DFSNIHT 89
                NI T
Sbjct: 487 GFGLYNIKT 495


>gi|90411890|ref|ZP_01219898.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK]
 gi|90327148|gb|EAS43520.1| DNA topoisomerase IV subunit B [Photobacterium profundum 3TCK]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 23/182 (12%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  + +VE ++        ++ D+G GM  +          E
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHARKVEVILHAD--QSLEVIDDGRGMPVDIHPVEGVSGVE 89

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
           + +  + H   K S+D     + G  G  +  + A+S  + +  +        QIA    
Sbjct: 90  LIL-CKLHAGGKFSNDSYQ-FSGGLHGVGISVVNALSKRVEVSVKRDGQI--YQIAFEHG 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
              S   V    G   +   + F  P    +  S +     +  V++  A+  P +   F
Sbjct: 146 DKVSELEVIGTCGRRAKGTRVHF-WPDAR-YFDSAKFSVTRLKSVLKAKAVLCPGLEIVF 203

Query: 187 ST 188
           + 
Sbjct: 204 TN 205


>gi|296131558|ref|YP_003638805.1| DNA topoisomerase IV, B subunit [Thermincola sp. JR]
 gi|296030136|gb|ADG80904.1| DNA topoisomerase IV, B subunit [Thermincola potens JR]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E +I     +   + DNG G+  +
Sbjct: 43 VYEVVDNSIDEALAGFCDKIEVIIHHD--NSITVIDNGRGIPVD 84


>gi|269961354|ref|ZP_06175719.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833905|gb|EEZ87999.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 686

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 21  ERPSIAIKELIENSLDA--ESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+LDA   ++  +  +             ++DNG G++ E +    + 
Sbjct: 580 QRLLQVLGNLVSNALDAMNNTTNPQLSLIVNPTLNQVELI-VSDNGCGVSDEMLESMFEP 638

Query: 75  HCTS-KISDDF 84
             TS KI +  
Sbjct: 639 FQTSKKIGEGL 649


>gi|229088735|ref|ZP_04220292.1| Histidine kinase [Bacillus cereus Rock3-44]
 gi|228694560|gb|EEL47979.1| Histidine kinase [Bacillus cereus Rock3-44]
          Length = 505

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIP 69
          +     A+ EL++NS DA+S  V+          GK    I D+G GMT +++ 
Sbjct: 2  VTDFVTALVELVKNSYDADSPAVKINFENVTTANGK--IIIVDSGTGMTQQDVD 53


>gi|217077245|ref|YP_002334963.1| hypothetical protein THA_1171 [Thermosipho africanus TCF52B]
 gi|217037100|gb|ACJ75622.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 26/174 (14%)

Query: 32  ENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKISDDFSNI 87
           ENS+ A +  V   I       +F  + D+G G+  +++        T  SK       I
Sbjct: 15  ENSIKAGAKNVTLEIYETDDEFTFI-VADDGPGI--KDVDKVFDPFYTTRSK------EI 65

Query: 88  HTFGFRGEALPSIGAVSHLT-----LMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIV 142
             FG     LP +   + +T     + ++      G ++  + +K         +    +
Sbjct: 66  RRFGL---GLPFLKQAAEMTGGEVKIETKL---GIGTKVYANFKKSHIDCQPVGDL--TM 117

Query: 143 EVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKM 196
               L       L   +    +   I+  + +  +     +   + +K    ++
Sbjct: 118 VFLSLLMNQDVNLTIKRCRYNDCYEISSEVVKKYLGSLDSAEKINILKEMIEEL 171


>gi|194339109|gb|ACF49470.1| GyrB [Amycolatopsis sacchari]
          Length = 466

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          I+E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 5  IQEVVDNSVDEAMAGYATKVEVTLLADGG---VRVADDGRGIPVD 46


>gi|90020023|ref|YP_525850.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40]
 gi|89949623|gb|ABD79638.1| DNA topoisomerase IV subunit B [Saccharophagus degradans 2-40]
          Length = 631

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  + ++E ++         +TD+G GM  +
Sbjct: 30 RPNHLAQEIIDNSVDEALAGHAKKIEVILHKD--QSVTVTDDGRGMPVD 76


>gi|78221232|ref|YP_382979.1| DNA gyrase subunit B [Geobacter metallireducens GS-15]
 gi|78192487|gb|ABB30254.1| DNA gyrase subunit B [Geobacter metallireducens GS-15]
          Length = 795

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V   I   G     + DNG G+ +E
Sbjct: 43 VYEIVDNSIDEALAGYCNEVNVTIHLDG--SITVVDNGRGIPTE 84


>gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 599

 Score = 44.3 bits (103), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 33  NSL--DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           N++   A    ++  +      +  +ITDNG G+  E++P   +R        D +    
Sbjct: 497 NAIKYTANGGCIDVSLEETQNHATIKITDNGMGIPKEDLPRIFERFY----RVDKARSRE 552

Query: 90  FGFRGEALPSIG 101
            G  G  L SI 
Sbjct: 553 MGGTGLGL-SIA 563


>gi|311030852|ref|ZP_07708942.1| Signal transduction histidine kinase, nitrogen specific, contains
           PAS/PAC domain [Bacillus sp. m3-13]
          Length = 422

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 30  LIENSLDA---ESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+NS++A     +    +I       G+   Q+ D+G G++S  +        TSK
Sbjct: 328 LIKNSMEAMPDGGT---VMITGLRETDGRKSIQVKDDGIGISSSNMDSIGNPFFTSK 381


>gi|299068143|emb|CBJ39360.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           CMR15]
          Length = 665

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAES-------SRVETVI---AGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+LDA +        R++  I    G        + DNG G+ ++ +P   +   T+
Sbjct: 554 LIGNALDAIAANDLSRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAADAMPHLFEPFFTT 613

Query: 79  K 79
           K
Sbjct: 614 K 614


>gi|293370455|ref|ZP_06617008.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
 gi|292634447|gb|EFF52983.1| DNA gyrase, B subunit [Bacteroides ovatus SD CMC 3f]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-AESS---RVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A +S    +E  I     +   + DNG G+  +
Sbjct: 47 VYEIVDNSIDEALASYCDHIEVTINED--NSITVQDNGRGIPVD 88


>gi|239928497|ref|ZP_04685450.1| two-component sensor [Streptomyces ghanaensis ATCC 14672]
 gi|291436822|ref|ZP_06576212.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339717|gb|EFE66673.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
          Length = 556

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 5   KLSEKIINQIAAGEIIER-PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITD 58
           +L +++++         R  +  +  L++N+LDA +     RVE  +   G++    + D
Sbjct: 416 RLPDRLVD--------SRGLATVVGNLVDNALDAVAGTPHARVEIELRAEGRTVVLVVRD 467

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+  E          ++K
Sbjct: 468 TGPGVPPEHRESVFTEGWSTK 488


>gi|226953356|ref|ZP_03823820.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244]
 gi|226835894|gb|EEH68277.1| topoisomerase IV subunit B [Acinetobacter sp. ATCC 27244]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  +++V   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHANQVTVTVYEDG--SLSVEDNGRGMPVD 76


>gi|255540135|ref|XP_002511132.1| zinc finger protein, putative [Ricinus communis]
 gi|223550247|gb|EEF51734.1| zinc finger protein, putative [Ricinus communis]
          Length = 816

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD     ++ V   +      G     I DNG GM  +++   +    +  SK+
Sbjct: 163 ELLDNALDEVCYGATYVNIDMLANWKDGSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKV 222

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 223 AN---TIGQYG 230


>gi|104782114|ref|YP_608612.1| sensory box histidine kinase/response regulator [Pseudomonas
           entomophila L48]
 gi|95111101|emb|CAK15821.1| putative sensory box histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 659

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
             Q+ D+G GM+ E++  A +   T+K
Sbjct: 453 LVQVEDDGHGMSQEDLEHAFEPFFTTK 479


>gi|17545050|ref|NP_518452.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17427340|emb|CAD13859.1| probable c4-dicarboxylate transport sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 665

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAES-------SRVETVI---AGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+LDA +        R++  I    G        + DNG G+ ++ +P   +   T+
Sbjct: 554 LIGNALDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGIAADAMPHLFEPFFTT 613

Query: 79  K 79
           K
Sbjct: 614 K 614


>gi|302338475|ref|YP_003803681.1| hypothetical protein Spirs_1965 [Spirochaeta smaragdinae DSM 11293]
 gi|301635660|gb|ADK81087.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
          Length = 513

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 59/172 (34%), Gaps = 28/172 (16%)

Query: 21  ERPSIAIKELIENSLDA-ESSRVE------------TVIAGGGKSFFQITDNGFGMTSEE 67
           + P I  +E I+NS+DA E+ +++              I    +    I D G G+ S  
Sbjct: 22  QDPIIIYREYIQNSVDAIEACKIKGIFDNYINNPIYIEIKK-QEKAISIYDTGIGLKSSL 80

Query: 68  I--PMAVQRHCTSKISDDFSNIHTFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
               +      T KI  +       GFRG   L  I   S LT+ S     NT + +   
Sbjct: 81  FYSTLTSIAASTKKIDSNI------GFRGIGRLAGIAYCSTLTMKSSYYGENTASILRWD 134

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLK-SEQVETNLITDVIRRM 175
            +KI             +E  DL           + +++    +I   +   
Sbjct: 135 AQKIRDSLRADKM----IEAIDLINNTTESFTEKEDTDKHYFEVILSDVNNQ 182


>gi|291485476|dbj|BAI86551.1| hypothetical protein BSNT_04428 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 334

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           ++ A E++      +  I++L+ N++  +E+S +E      G ++  Q+ D G G+  ++
Sbjct: 208 KLEAKEVLSDAKWLAFIIRQLLTNAVKYSEASEIEIKSFQKGEQTQLQVKDCGRGIDPKD 267

Query: 68  IPMAVQRHCTS 78
           +P    +  TS
Sbjct: 268 VPRIFDKGFTS 278


>gi|226308504|ref|YP_002768464.1| chaperone protein HtpG [Rhodococcus erythropolis PR4]
 gi|226187621|dbj|BAH35725.1| chaperone protein HtpG [Rhodococcus erythropolis PR4]
          Length = 642

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 45/187 (24%)

Query: 25  IAIKELIENSLDAESS------------------RVETVIAGGGKSFFQITDNGFGMTSE 66
             ++ELI N+ DA                      +E  I    ++   I DNG GM+ +
Sbjct: 31  SFLRELISNASDALDKLRLESYQDKDLNVDVSDLHIEIDIDKAARTL-TIRDNGIGMSRD 89

Query: 67  EIPMAVQRHCTS-------KISDDFSNIHT--------FGFRGEALPSIGAVS-HLTLMS 110
           E+   +     S       K+ +      +         GF      S   V+  +TL++
Sbjct: 90  EVVDLIGTLAKSGTAEVRRKLKEAKDAAASEELIGQFGIGF-----YSTFMVADKVTLLT 144

Query: 111 RPPQNNTGAQIAISGEKISSVRPVA-MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           R    +   +   +GE   ++  V     G+ V        +P        +      I 
Sbjct: 145 RRAGEDHATRWESTGEGTYTLEHVNEAPQGSSVT----LHLMPEDSENGLHDYTSEWKIK 200

Query: 170 DVIRRMA 176
           +++++ +
Sbjct: 201 ELVKKYS 207


>gi|221200511|ref|ZP_03573553.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
 gi|221206192|ref|ZP_03579206.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2]
 gi|221174204|gb|EEE06637.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2]
 gi|221179852|gb|EEE12257.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           IER    ++ L+ N++   DA   R+       G +   +I D G G+  +++ +  + +
Sbjct: 344 IER---VVRNLVGNAVRYTDAG--RIVVGCRYRGARIAIEIHDTGRGIPRDQLELVFREY 398

Query: 76  C 76
            
Sbjct: 399 Y 399


>gi|188587492|ref|YP_001919037.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352179|gb|ACB86449.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 31  IENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +EN++    +    ++  +    ++    + DNG G+ +E++P   +R  
Sbjct: 504 LENAIKYSPSG-EWIQITVEDYYENIKISVKDNGMGIPAEDLPRIFERFY 552


>gi|152159|gb|AAA26249.1| dctB protein [Sinorhizobium meliloti]
          Length = 616

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 23/90 (25%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAG--G 49
           IR  L       + N+I       R    +  L++N+L+A       +  ++       G
Sbjct: 497 IRLDLPPDGLQALGNRI-------RLEQVLINLLQNALEAIGDSEDGA--IQVRCEEAAG 547

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           G +   + DNG G+ ++          TSK
Sbjct: 548 GIAL-TVADNGPGIAADVREELFTPFNTSK 576


>gi|16265272|ref|NP_438064.1| C4-dicarboxylate transport sensor protein [Sinorhizobium meliloti
           1021]
 gi|17380400|sp|P13633|DCTB_RHIME RecName: Full=C4-dicarboxylate transport sensor protein dctB
 gi|15141412|emb|CAC49924.1| C4-dicarboxylate transport sensor protein [Sinorhizobium meliloti
           1021]
          Length = 621

 Score = 44.3 bits (103), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 23/90 (25%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAG--G 49
           IR  L       + N+I       R    +  L++N+L+A       +  ++       G
Sbjct: 502 IRLDLPPDGLQALGNRI-------RLEQVLINLLQNALEAIGDSEDGA--IQVRCEEAAG 552

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           G +   + DNG G+ ++          TSK
Sbjct: 553 GIAL-TVADNGPGIAADVREELFTPFNTSK 581


>gi|254560315|ref|YP_003067410.1| sensor histidine kinase , transcriptional regulator of C4
           dicarboxylate transporter [Methylobacterium extorquens
           DM4]
 gi|254267593|emb|CAX23435.1| putative sensor histidine kinase precursor, putative
           transcriptional regulator of C4 dicarboxylate
           transporter [Methylobacterium extorquens DM4]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRH 75
           R S  +  L+ N+LDA      +  V      G G+    + DNG G+ +  +    +  
Sbjct: 496 RLSQVLVNLVGNALDAVKGRPGA-EVAVRAWAGEGQVVLSVEDNGPGLDAAALARLFEPF 554

Query: 76  CTSK 79
            T+K
Sbjct: 555 FTTK 558


>gi|240137743|ref|YP_002962215.1| putative sensor histidine kinase precursor, putative
           transcriptional regulator of C4 dicarboxylate
           transporter [Methylobacterium extorquens AM1]
 gi|240007712|gb|ACS38938.1| putative sensor histidine kinase precursor, putative
           transcriptional regulator of C4 dicarboxylate
           transporter [Methylobacterium extorquens AM1]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRH 75
           R S  +  L+ N+LDA      +  V      G G+    + DNG G+ +  +    +  
Sbjct: 496 RLSQVLVNLVGNALDAVKGRPGA-EVAVRAWAGEGQVVLSVEDNGPGLDAAALARLFEPF 554

Query: 76  CTSK 79
            T+K
Sbjct: 555 FTTK 558


>gi|218529412|ref|YP_002420228.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218521715|gb|ACK82300.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 621

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRH 75
           R S  +  L+ N+LDA      +  V      G G+    + DNG G+ +  +    +  
Sbjct: 496 RLSQVLVNLVGNALDAVKGRPGA-EVAVRAWAGEGQVVLSVEDNGPGLDAAALARLFEPF 554

Query: 76  CTSK 79
            T+K
Sbjct: 555 FTTK 558


>gi|213021678|ref|ZP_03336125.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 21/175 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
                                +       +F  S +   + +  V++  A+  P 
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLMHVLKAKAVLCPG 197


>gi|114771101|ref|ZP_01448541.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255]
 gi|114548383|gb|EAU51269.1| DNA topoisomerase IV subunit B [alpha proteobacterium HTCC2255]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A  ++ +E  +         + DNG G+  +
Sbjct: 50 VAEIIDNSMDEAVAGHATWIEVELHEN--FHVTVRDNGRGIPVD 91


>gi|76562223|gb|ABA44807.1| DNA gyrase, B subunit [Streptococcus agalactiae A909]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 44 EIVDNSIDEALAGFAGHIKVYIEPD--NSITVVDDGRGIPVD 83


>gi|22536796|ref|NP_687647.1| DNA gyrase subunit B [Streptococcus agalactiae 2603V/R]
 gi|25010667|ref|NP_735062.1| DNA gyrase subunit B [Streptococcus agalactiae NEM316]
 gi|161486746|ref|YP_329336.2| DNA gyrase subunit B [Streptococcus agalactiae A909]
 gi|22533641|gb|AAM99519.1|AE014219_11 DNA gyrase, B subunit [Streptococcus agalactiae 2603V/R]
 gi|23095021|emb|CAD46247.1| DNA gyrase, subunit B [Streptococcus agalactiae NEM316]
 gi|319744658|gb|EFV97005.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptococcus
          agalactiae ATCC 13813]
          Length = 650

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 51 EIVDNSIDEALAGFAGHIKVYIEPD--NSITVVDDGRGIPVD 90


>gi|77414294|ref|ZP_00790453.1| DNA gyrase, B subunit [Streptococcus agalactiae 515]
 gi|77159673|gb|EAO70825.1| DNA gyrase, B subunit [Streptococcus agalactiae 515]
          Length = 577

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 21 EIVDNSIDEALAGFAGHIKVYIEPD--NSITVVDDGRGIPVD 60


>gi|77406144|ref|ZP_00783217.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
 gi|77408497|ref|ZP_00785234.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
 gi|77172854|gb|EAO75986.1| DNA gyrase, B subunit [Streptococcus agalactiae COH1]
 gi|77175267|gb|EAO78063.1| DNA gyrase, B subunit [Streptococcus agalactiae H36B]
          Length = 620

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 21 EIVDNSIDEALAGFAGHIKVYIEPD--NSITVVDDGRGIPVD 60


>gi|77411131|ref|ZP_00787484.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
 gi|77162854|gb|EAO73812.1| DNA gyrase, B subunit [Streptococcus agalactiae CJB111]
          Length = 620

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 21 EIVDNSIDEALAGFAGHIKVYIEPD--NSITVVDDGRGIPVD 60


>gi|295687623|ref|YP_003591316.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
 gi|295429526|gb|ADG08698.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
          Length = 543

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTS 78
            V   +          + D+G GM  + +    +R  TS
Sbjct: 450 EVRVSLTRARGRLIAAVEDDGPGMPPDNLETIFERFYTS 488


>gi|238063681|ref|ZP_04608390.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149]
 gi|237885492|gb|EEP74320.1| DNA gyrase subunit B gyrB [Micromonospora sp. ATCC 39149]
          Length = 703

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS D   A  ++R+E ++   G    Q+ D+G G+ ++
Sbjct: 61  VNEILDNSTDEGVAGHATRIEVILHADG--SVQVDDDGRGIPTD 102


>gi|251795488|ref|YP_003010219.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543114|gb|ACT00133.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 606

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 30  LIENSL--------D-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+ENS+        D A    +E  +         ++DNG GM  + +    +R
Sbjct: 490 LVENSIQHGFEGLEDGAGMITIEVTVEAHQI-VILVSDNGHGMNEQTLKKFAER 542


>gi|167465701|ref|ZP_02330790.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381731|ref|ZP_08055688.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154321|gb|EFX46640.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 503

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 5   KLSEKIINQ-IA---AGEIIERPSIAIKE----------LIENSLDA--ESSRVETVIAG 48
            L  +  ++ I    AGE     +  + E          L++N++++     ++   I G
Sbjct: 370 LLDTEAKHKNIRIVVAGEA--DLAPVLCEENQLKQLFIHLLKNAVESMEHGGKILIQIRG 427

Query: 49  GGKSFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
            GK     +ITD G G+  E++    +   T+K
Sbjct: 428 HGKDRICVRITDQGCGIAPEQMHKLGEPFYTTK 460


>gi|146340513|ref|YP_001205561.1| DNA topoisomerase IV subunit B [Bradyrhizobium sp. ORS278]
 gi|146193319|emb|CAL77335.1| DNA topoisomerase IV, subunit B [Bradyrhizobium sp. ORS278]
          Length = 691

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  +TDNG G+  +
Sbjct: 84  EVIDNSMDEALAGHATFIEVELDAQG--FLTVTDNGRGIPID 123


>gi|83647864|ref|YP_436299.1| signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Hahella chejuensis KCTC 2396]
 gi|83635907|gb|ABC31874.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Hahella chejuensis KCTC 2396]
          Length = 443

 Score = 44.3 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 23  PSIAIKELIENSLDA--ESSR--VETVIAGGGKSFF--QITDNGFGMTSEEIPMAVQRHC 76
              A+  L  N+L+A   + +  VE +++  G+ F   ++ DNG G   E+ P  ++   
Sbjct: 336 LVGAVLNLFNNALEAVKGADQPQVEVILSAPGQGFICLEVRDNGVGFEPEDGPRLLEAFY 395

Query: 77  TSK 79
           T+K
Sbjct: 396 TTK 398


>gi|332799828|ref|YP_004461327.1| histidine kinase [Tepidanaerobacter sp. Re1]
 gi|332697563|gb|AEE92020.1| histidine kinase [Tepidanaerobacter sp. Re1]
          Length = 182

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 28 KEL-------IENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          KEL       ++NSL A++S VE  I    K+     +I DNG GM  E     +    T
Sbjct: 2  KELSLHILDVVQNSLGAKASLVEIDIIEDVKNDLLTIKIKDNGAGMDEEMSKKVIDPFFT 61


>gi|322373914|ref|ZP_08048449.1| sensor histidine kinase CsrS [Streptococcus sp. C150]
 gi|321277286|gb|EFX54356.1| sensor histidine kinase CsrS [Streptococcus sp. C150]
          Length = 509

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++     D     ++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 397 LIDNAVKYSPVD---KEIQVTIKALENEMLVQVQDNGEGISKEDIEHIFERFYRS 448


>gi|321312575|ref|YP_004204862.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope (YtsA) [Bacillus
           subtilis BSn5]
 gi|320018849|gb|ADV93835.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope (YtsA) [Bacillus
           subtilis BSn5]
          Length = 334

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           ++ A E++      +  I++L+ N++  +E+S +E      G ++  Q+ D G G+  ++
Sbjct: 208 KLEAKEVLSDAKWLAFIIRQLLTNAVKYSEASEIEIKSFQKGEQTQLQVKDCGRGIDPKD 267

Query: 68  IPMAVQRHCTS 78
           +P    +  TS
Sbjct: 268 VPRIFDKGFTS 278


>gi|325102923|ref|YP_004272577.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
 gi|324971771|gb|ADY50755.1| DNA gyrase subunit B [Pedobacter saltans DSM 12145]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 45 VYEVVDNSIDEALAGYCTDILVTIHKN--NSITVEDNGRGIP 84


>gi|238913751|ref|ZP_04657588.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|289805213|ref|ZP_06535842.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 134

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21 ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
          +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 27 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 84

Query: 75 HCTSK 79
          + T+K
Sbjct: 85 YFTTK 89


>gi|224585713|ref|YP_002639512.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470241|gb|ACN48071.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|213612380|ref|ZP_03370206.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 297

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 189 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 246

Query: 75  HCTSK 79
           + T+K
Sbjct: 247 YFTTK 251


>gi|213423581|ref|ZP_03356561.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 177

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 69  DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 126

Query: 75  HCTSK 79
           + T+K
Sbjct: 127 YFTTK 131


>gi|213161648|ref|ZP_03347358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 393

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 285 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 342

Query: 75  HCTSK 79
           + T+K
Sbjct: 343 YFTTK 347


>gi|213022037|ref|ZP_03336484.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 150

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 42  DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 99

Query: 75  HCTSK 79
           + T+K
Sbjct: 100 YFTTK 104


>gi|205354425|ref|YP_002228226.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274206|emb|CAR39224.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
          Length = 463

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 355 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 412

Query: 75  HCTSK 79
           + T+K
Sbjct: 413 YFTTK 417


>gi|194446308|ref|YP_002043421.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197263097|ref|ZP_03163171.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|194404971|gb|ACF65193.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197241352|gb|EDY23972.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|148767472|gb|ABR10709.1| DctB [Mesorhizobium sp. CJ1]
          Length = 606

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA---ESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+LDA   +S  R+E  +     +    + DNG G+  E          
Sbjct: 502 RLEQILVNLLQNALDAMKDQSDPRIEIELAERDDRVLISVRDNGPGLGPEAAGNLFMPFQ 561

Query: 77  TSK 79
           T+K
Sbjct: 562 TTK 564


>gi|146308831|ref|YP_001189296.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577032|gb|ABP86564.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 636

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 33  NSLDA------ESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N++DA       +   +  +  G        ++ D G G++ E++        TSK
Sbjct: 538 NAIDANRERHPGAPS-QVRLEAGECDGGLAIRVIDQGPGVSDEQMAKLFTPFYTSK 592


>gi|86160665|ref|YP_467450.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777176|gb|ABC84013.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 16/75 (21%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETV---------IAGG---GKSFFQITDNGFGMT 64
           E+    +  L+ N++DA ++    RV            +A G     +   I D G G+ 
Sbjct: 36  EKLMQVVLNLVRNAVDAVATTPSPRVTIETSVSPLRLRVASGRTRPLARVSIQDEGPGIP 95

Query: 65  SEEIPMAVQRHCTSK 79
              +        TSK
Sbjct: 96  EAMLQRLFTPFATSK 110


>gi|16762284|ref|NP_457901.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143772|ref|NP_807114.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213580344|ref|ZP_03362170.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213855079|ref|ZP_03383319.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|20140997|sp|Q8Z332|ZRAS_SALTI RecName: Full=Sensor protein zraS
 gi|25512555|pir||AE0931 two-component system sensor protein STY3712 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504588|emb|CAD09471.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139407|gb|AAO70974.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|304405489|ref|ZP_07387148.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304345528|gb|EFM11363.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 505

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 19/97 (19%)

Query: 11  INQIAAGEIIERPSIAIKELIENSL---DAESSRVETVIAG--GGKSFFQITDNGFGMTS 65
            +QI   +++            N++   DA S  ++  ++    G+    ITDNG G+ +
Sbjct: 392 ADQIK--QVVLNLFH-------NAVQHTDAHSGIIQVTVSDRPAGQPIVSITDNGPGIAA 442

Query: 66  EEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGA 102
           E +P   +R        D S     G  G  L SI  
Sbjct: 443 EHVPHVFERFY----RSDSSRTRKHGGAGLGL-SISQ 474


>gi|300123732|emb|CBK25004.2| unnamed protein product [Blastocystis hominis]
          Length = 406

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 29 ELIENSLDA---------ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP-MAVQRHCT 77
          EL++NS+DA         E   +   +      +  Q+ DNG GM  + IP +      +
Sbjct: 32 ELLDNSIDAVVHKPKTPVEERSIVITVSKDENANTIQVVDNGIGMDCDSIPELCGGIFNS 91

Query: 78 SK 79
          SK
Sbjct: 92 SK 93


>gi|194471314|ref|ZP_03077298.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358832|ref|ZP_02659463.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194457678|gb|EDX46517.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331651|gb|EDZ18415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 465

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|153813002|ref|ZP_01965670.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174]
 gi|149830949|gb|EDM86039.1| hypothetical protein RUMOBE_03409 [Ruminococcus obeum ATCC 29174]
          Length = 660

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A   S++  V+   G     +TDNG G+  +
Sbjct: 62  EIVDNAVDEHLAGYCSQIHVVLEKDG--SCTVTDNGRGIPVD 101


>gi|89901841|ref|YP_524312.1| hypothetical protein Rfer_3071 [Rhodoferax ferrireducens T118]
 gi|89346578|gb|ABD70781.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMA 71
            + A+ ++I+NS+ A +S      A  G  S   + D+G GMT  E+  A
Sbjct: 25 STAAALADIIDNSISAGASEARLDFAWNGATSRISVLDDGRGMTDAELESA 75


>gi|78061251|ref|YP_371159.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
 gi|77969136|gb|ABB10515.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAAPDGGAVIAVRDRGPGIPDDQLDAVFEPF 387


>gi|134292231|ref|YP_001115967.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia vietnamiensis G4]
 gi|134135388|gb|ABO56502.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia vietnamiensis G4]
          Length = 445

 Score = 44.3 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 333 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAAPDGGAVIAVRDRGPGIPDDQLDAVFEPF 392


>gi|300934345|ref|ZP_07149601.1| DNA gyrase subunit B [Corynebacterium resistens DSM 45100]
          Length = 674

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 16/73 (21%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP--------MAVQRH 75
           E+++NS+D   A  ++ V   +   GG    ++ DNG G+  E+ P        +  Q H
Sbjct: 46  EVVDNSVDEAMAGYANEVTVKLLEDGG---VEVEDNGRGIPVEKHPSGPPTVQVVMTQLH 102

Query: 76  CTSKISDDFSNIH 88
              K   D   + 
Sbjct: 103 AGGKFDSDSYAVS 115


>gi|300696573|ref|YP_003747234.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           CFBP2957]
 gi|299073297|emb|CBJ52806.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           CFBP2957]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           R    +  LI N++DA +          +V   +         + D G G+  + +P   
Sbjct: 520 RLEQVLVNLIRNAIDATAEVPQPEAAGVQVSVDVGDA-LVRITVRDAGPGIAPQVLPHLF 578

Query: 73  QRHCTSK 79
           +   T+K
Sbjct: 579 EPFFTTK 585


>gi|295134774|ref|YP_003585450.1| histidine kinase [Zunongwangia profunda SM-A87]
 gi|294982789|gb|ADF53254.1| histidine kinase [Zunongwangia profunda SM-A87]
          Length = 743

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            G     Q+TDNG G+  EE+P   +R+  S
Sbjct: 402 DGEILKIQVTDNGKGIAKEEVPKIFERYYRS 432


>gi|170691562|ref|ZP_02882727.1| histidine kinase [Burkholderia graminis C4D1M]
 gi|170143767|gb|EDT11930.1| histidine kinase [Burkholderia graminis C4D1M]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     + R+   I     +  F + DNG G+  + +P   +   
Sbjct: 546 RLEQVLINLLGNALDATAGMSAPRISVHIEVASDNLSFAVGDNGPGIAEDVLPRLFEPFF 605

Query: 77  TSK 79
           T+K
Sbjct: 606 TTK 608


>gi|313158986|gb|EFR58363.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 349

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC-TSK 79
             ++ DNG G+  E++P   +R   T K
Sbjct: 270 LIEVEDNGSGIGKEDLPRVFERFYRTDK 297


>gi|302381640|ref|YP_003817463.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192268|gb|ADK99839.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 506

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF----FQITDNGFGMTSE 66
           + ++A  E++   S  +    EN+ D  ++RV  +   G         ++ D+G G  ++
Sbjct: 352 VRRLA--EVVHGLSAIV----ENAADFAATRVRVL---GSADVQWITIEVLDDGPGFAAD 402

Query: 67  EIPMAVQRHCTS 78
            +P   + + TS
Sbjct: 403 ILPRLGEPYVTS 414


>gi|296118608|ref|ZP_06837186.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968507|gb|EFG81754.1| DNA gyrase, B subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT----SEEIPMA----VQRH 75
           E+++NS+D   A  +S+V   +   GG    ++TD+G G+     +   P       Q H
Sbjct: 17  EVVDNSVDEAMAGHASKVIVRLMEDGG---VEVTDDGRGIPVGMHASGAPTVQVVMTQLH 73

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K   D   I + G  G  +  + A+S  +    +    +       S  +       
Sbjct: 74  AGGKFDSDSYAI-SGGLHGVGISVVNALSTRVEAEIKTDGKHWYQVFNNSIPEELQEGGN 132

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
           A   GT +          A     +S + + + I   ++ MA     ++      +  + 
Sbjct: 133 ARGSGTKIRFW-------ADPEIFESVEYDYDTIARRLQEMAFLNKGLTIQLIDERVTKE 185

Query: 195 KM 196
           ++
Sbjct: 186 QL 187


>gi|226314403|ref|YP_002774299.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226097353|dbj|BAH45795.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 713

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 41  RVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTSK 79
            +E           +  I D+G G+ + ++P  ++   T+K
Sbjct: 627 TIEIATDSPSVDRLRLWIRDDGCGIPAADLPHVLEPFYTTK 667


>gi|297202877|ref|ZP_06920274.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
 gi|197715216|gb|EDY59250.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
          Length = 558

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
               +  L++N+LDA +     RVE  +   G++   ++ D G G+  E+  +      +
Sbjct: 429 LVTIVGNLVDNALDAVAGDLHARVEVELRAEGRAAVLRVRDTGPGIPVEQRELVFTEGWS 488

Query: 78  SK 79
           +K
Sbjct: 489 TK 490


>gi|169335585|ref|ZP_02862778.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258323|gb|EDS72289.1| hypothetical protein ANASTE_02000 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 636

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   I  G      + D+G G+ 
Sbjct: 42 VYEIVDNSVDEALAGFCKNIVVTIGEG--DTITVEDDGRGIP 81


>gi|153941226|ref|YP_001390236.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152937122|gb|ABS42620.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295318330|gb|ADF98707.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 333

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            +          +  +I+DNG G+  E++P   +R  
Sbjct: 248 TISISFDENPLFTEIKISDNGNGIPKEDLPYIFKRFY 284


>gi|126435515|ref|YP_001071206.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
 gi|126235315|gb|ABN98715.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +R S  +  L++N+L    +   RVE      G     +++DNG G+ +E +P   +R  
Sbjct: 254 QRMSQVLANLLDNALRHTPSG-GRVEISARRDGHRVLIRVSDNGEGIAAEHLPHVFERFY 312


>gi|108799872|ref|YP_640069.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119868982|ref|YP_938934.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|108770291|gb|ABG09013.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119695071|gb|ABL92144.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
          Length = 379

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +R S  +  L++N+L    +   RVE      G     +++DNG G+ +E +P   +R  
Sbjct: 254 QRMSQVLANLLDNALRHTPSG-GRVEISARRDGHRVLIRVSDNGEGIAAEHLPHVFERFY 312


>gi|304123|gb|AAA03552.1| ChvG [Agrobacterium tumefaciens str. C58]
          Length = 690

 Score = 44.3 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 17  GEIIERPSIAIKELIENS---LDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAV 72
           G+I+         LIEN+   +  ES R+   ++        Q+ DNG G+ +E+I    
Sbjct: 465 GQIVTN-------LIENARSFVSEESGRITVRLSRHKDRCIVQVEDNGPGIQAEDIDRIF 517

Query: 73  QRHCT 77
           +R  T
Sbjct: 518 ERFYT 522


>gi|332004472|gb|AED91855.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 696

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           EL++NSLD     ++ V          GKS    + DNG GM        +    + K
Sbjct: 123 ELLDNSLDEVSNGATYVHVDSTINKRDGKSSILIVEDNGGGMNPSTFRECLSLGYSRK 180


>gi|323139224|ref|ZP_08074279.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322395522|gb|EFX98068.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ DA     + R+   I   G      +TDNG G++   +    +   T+K
Sbjct: 351 LIDNAFDATRDVAAPRIRIGINKAGDEAEISVTDNGRGLSDVLLDKVFEPFFTTK 405


>gi|255283818|ref|ZP_05348373.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469]
 gi|255265701|gb|EET58906.1| DNA gyrase, B subunit [Bryantella formatexigens DSM 14469]
          Length = 641

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     V+  I     +   + DNG G+ 
Sbjct: 43 VYEIVDNSIDEALAGYCDTVDVTINED--NSITVIDNGRGIP 82


>gi|221215179|ref|ZP_03588145.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD1]
 gi|221164863|gb|EED97343.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD1]
          Length = 475

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   +   G  +   + DNG G+  +E     +R  
Sbjct: 370 LIDNAIRYAGDRAVITVRVSREGECARLDVIDNGPGIPEDERDAVFERFH 419


>gi|254471182|ref|ZP_05084584.1| sensory box sensor histidine kinase/response regulator
           [Pseudovibrio sp. JE062]
 gi|211959328|gb|EEA94526.1| sensory box sensor histidine kinase/response regulator
           [Pseudovibrio sp. JE062]
          Length = 869

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)

Query: 41  RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCT 77
            +   +   G       +TDNG GM  E +    +   T
Sbjct: 641 TISIRVEVNGVESVSISVTDNGCGMDQETLDRVYEPFFT 679


>gi|149188280|ref|ZP_01866574.1| sensor histidine kinase [Vibrio shilonii AK1]
 gi|148837869|gb|EDL54812.1| sensor histidine kinase [Vibrio shilonii AK1]
          Length = 458

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 12/66 (18%)

Query: 18  EIIERPSIAIKELIENSLDAESSR----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           E++            N+LDA +++    +        K   ++ D G GM+ + +  A Q
Sbjct: 358 EVVINLVS-------NALDASANQRKLAIRVQ-KDHDKVSLKVRDWGTGMSPKTLEKATQ 409

Query: 74  RHCTSK 79
              T+K
Sbjct: 410 PFFTTK 415


>gi|114766171|ref|ZP_01445171.1| C4-dicarboxylate transport sensor protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114541542|gb|EAU44585.1| C4-dicarboxylate transport sensor protein [Roseovarius sp.
           HTCC2601]
          Length = 583

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSR----VETVI---AGGGKSFFQITDNGFGM 63
           AGE+  R    +  L+ N++DA +      +   +     GG+    + D G G+
Sbjct: 469 AGEV--RLGQVVINLLSNAMDAMADSETRAITIRVTRDDDGGRVMLSVRDTGPGI 521


>gi|19909715|dbj|BAB87053.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + ++  I     +   I DNG G+  
Sbjct: 10 EVLDNSIDEALAGYCTEIQVTIHSD--NSISIIDNGRGIPP 48


>gi|19909713|dbj|BAB87052.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + ++  I     +   I DNG G+  
Sbjct: 10 EVLDNSIDEALAGYCTEIQVTIHSD--NSISIIDNGRGIPP 48


>gi|324999887|ref|ZP_08120999.1| DNA gyrase, B subunit [Pseudonocardia sp. P1]
          Length = 700

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 89/309 (28%), Gaps = 33/309 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE--------EIPMAV-QR 74
           E+++NS+D   A  +++V   +   GG    ++ D+G G+  E         + + +   
Sbjct: 59  EVVDNSVDEAMAGHATKVVVTLQPDGG---VRVEDDGRGIPVEMHPVEKKPTLEVVLTSL 115

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D    + + G  G  +  + A+S  L +  R   +    +      K   +  
Sbjct: 116 HAGGKFDDKSYAV-SGGLHGVGVSVVNALSTALEVEVRV--DGKIWKQRYDHAKPGELVE 172

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
                 +       ++  P      ++       I   ++        ++      +   
Sbjct: 173 AGTTKKSDTGTTITYWADPT---IFETTSYTLETIRRRLQEQTFLNKGLTMVLRDERRPE 229

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPT-FNRGNANQFYV 252
                    G          G       V   ++      +GY   P  +     N    
Sbjct: 230 T-----PATGVPSSDAVDEDGNPVEAAPVVDVDEEP--DAEGYVAKPKEYVFHYPNGLED 282

Query: 253 FINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPT 312
           F+     + K  +     AY    P  +  V +         V    +   ++    +  
Sbjct: 283 FV-AHLNKSKDPIHRKIVAYTGEGPGHQVEVAMQWNSGYSESVYTFANTINTHEGGTHEE 341

Query: 313 IIRNFIIQS 321
             R+ +  +
Sbjct: 342 GFRHALTAT 350


>gi|313497433|gb|ADR58799.1| Integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida BIRD-1]
          Length = 612

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA +++ +  +       G K   Q+ DNG G+  E      +  
Sbjct: 496 TRLEQILVNLIGNALDAMAAQPQPELWLEGELQGDKYRLQVRDNGHGIDPEARKHLFEPF 555

Query: 76  CTSK 79
            T+K
Sbjct: 556 FTTK 559


>gi|313893498|ref|ZP_07827068.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441941|gb|EFR60363.1| DNA gyrase, B subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 633

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 40 VYEVVDNSVDEALAGYATHIEVSINPD--NSITVVDDGRGIP 79


>gi|289579993|ref|YP_003478459.1| DNA gyrase subunit beta [Natrialba magadii ATCC 43099]
 gi|289529546|gb|ADD03897.1| DNA gyrase, B subunit [Natrialba magadii ATCC 43099]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 41 VYEVVDNSIDEALAGHCDEITVSINED--DSISVADDGRGIPVD 82


>gi|224534805|ref|ZP_03675377.1| DNA gyrase, B subunit [Borrelia spielmanii A14S]
 gi|224514053|gb|EEF84375.1| DNA gyrase, B subunit [Borrelia spielmanii A14S]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 42 VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 83


>gi|261420032|ref|YP_003253714.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|297530007|ref|YP_003671282.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|319766846|ref|YP_004132347.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376489|gb|ACX79232.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|297253259|gb|ADI26705.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|317111712|gb|ADU94204.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 434

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 23  PSIAIKE-------LI---ENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           P   I E       L+   +N+++A     + +V   I   G+   +I D G GMT E++
Sbjct: 304 PFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDN-GRVLIRIADTGVGMTKEQL 362

Query: 69  PMAVQRHCTSK 79
               + + T+K
Sbjct: 363 ERLGEPYFTTK 373


>gi|225552337|ref|ZP_03773277.1| DNA gyrase, B subunit [Borrelia sp. SV1]
 gi|225371335|gb|EEH00765.1| DNA gyrase, B subunit [Borrelia sp. SV1]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 78


>gi|224532514|ref|ZP_03673139.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23]
 gi|224512586|gb|EEF82962.1| DNA gyrase, B subunit [Borrelia burgdorferi WI91-23]
 gi|312149421|gb|ADQ29492.1| DNA gyrase, B subunit [Borrelia burgdorferi N40]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 78


>gi|195942016|ref|ZP_03087398.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi 80a]
 gi|216264581|ref|ZP_03436573.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a]
 gi|218249329|ref|YP_002374947.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7]
 gi|221218016|ref|ZP_03589482.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a]
 gi|223888682|ref|ZP_03623273.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b]
 gi|224533655|ref|ZP_03674244.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548740|ref|ZP_03769787.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a]
 gi|225549469|ref|ZP_03770435.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a]
 gi|226321066|ref|ZP_03796608.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805]
 gi|226321745|ref|ZP_03797271.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26]
 gi|215981054|gb|EEC21861.1| DNA gyrase, B subunit [Borrelia burgdorferi 156a]
 gi|218164517|gb|ACK74578.1| DNA gyrase, B subunit [Borrelia burgdorferi ZS7]
 gi|221191964|gb|EEE18185.1| DNA gyrase, B subunit [Borrelia burgdorferi 72a]
 gi|223885498|gb|EEF56597.1| DNA gyrase, B subunit [Borrelia burgdorferi 64b]
 gi|224513328|gb|EEF83690.1| DNA gyrase, B subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369746|gb|EEG99193.1| DNA gyrase, B subunit [Borrelia burgdorferi 118a]
 gi|225370770|gb|EEH00206.1| DNA gyrase, B subunit [Borrelia burgdorferi 94a]
 gi|226232934|gb|EEH31687.1| DNA gyrase, B subunit [Borrelia burgdorferi Bol26]
 gi|226233476|gb|EEH32215.1| DNA gyrase, B subunit [Borrelia burgdorferi 29805]
 gi|312148462|gb|ADQ31121.1| DNA gyrase, B subunit [Borrelia burgdorferi JD1]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 78


>gi|148254524|ref|YP_001239109.1| putative two-component sensor histidine kinase [Bradyrhizobium sp.
           BTAi1]
 gi|146406697|gb|ABQ35203.1| putative two-component sensor histidine kinase [Bradyrhizobium sp.
           BTAi1]
          Length = 486

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 23/93 (24%)

Query: 30  LIENSL----------D---AESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L+EN++          D   A ++R E +I     GG+    +TD+G G+   E   AV+
Sbjct: 359 LVENAIKYGKPAALPLDPNAAAATR-EILIEARREGGQVLLSVTDHGEGIPEAERKHAVE 417

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
           R              T    G  L    AV+ L
Sbjct: 418 RFV------RLEASRTLPGSGLGLSLASAVATL 444


>gi|110679338|ref|YP_682345.1| DNA topoisomerase IV subunit B [Roseobacter denitrificans OCh 114]
 gi|109455454|gb|ABG31659.1| DNA topoisomerase IV, B subunit [Roseobacter denitrificans OCh 114]
          Length = 682

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++R+E  +         I DNG G+  +
Sbjct: 78  VAEVLDNSMDEAVAGHATRIEVELHED--YAITIRDNGRGIPID 119


>gi|2338752|gb|AAB67237.1| DNA gyrase subunit B [Borrelia burgdorferi]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 78


>gi|26987803|ref|NP_743228.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida KT2440]
 gi|24982500|gb|AAN66692.1|AE016297_6 sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA +++ +  +       G K   Q+ DNG G+  E      +  
Sbjct: 519 TRLEQILVNLIGNALDAMAAQPQPELWLEGELQGDKYRLQVRDNGHGIDPEARKHLFEPF 578

Query: 76  CTSK 79
            T+K
Sbjct: 579 FTTK 582


>gi|15594781|ref|NP_212570.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31]
 gi|3915725|sp|P33769|GYRB_BORBU RecName: Full=DNA gyrase subunit B
 gi|2688337|gb|AAC66802.1| DNA gyrase, subunit B (gyrB) [Borrelia burgdorferi B31]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 42 VYEVVDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 83


>gi|28900037|ref|NP_799692.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153837545|ref|ZP_01990212.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|260362233|ref|ZP_05775212.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260880615|ref|ZP_05892970.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260896570|ref|ZP_05905066.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|260899771|ref|ZP_05908166.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|28808320|dbj|BAC61525.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749141|gb|EDM59946.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|308086824|gb|EFO36519.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308092212|gb|EFO41907.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308110392|gb|EFO47932.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308115597|gb|EFO53137.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 690

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 21  ERPSIAIKELIENSLDAESSR----VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  LI N+LDA  SR    +  V+          ++DNG G+  E++    +  
Sbjct: 580 QRLQQVLGNLISNALDAMQSRDNPQLSIVVTPTNSHVEVVVSDNGCGVALEQLDTIFEPF 639

Query: 76  CTS-KISDDF 84
            TS KI +  
Sbjct: 640 QTSKKIGEGL 649


>gi|58696735|ref|ZP_00372279.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
          simulans]
 gi|58537087|gb|EAL60209.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
          simulans]
          Length = 621

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 16 VYEVIDNAIDESLAGYCDKIEVSINKDG--SVSVTDNGRGIPTD 57


>gi|319653685|ref|ZP_08007783.1| two-component sensor histidine kinase [Bacillus sp. 2_A_57_CT2]
 gi|317394658|gb|EFV75398.1| two-component sensor histidine kinase [Bacillus sp. 2_A_57_CT2]
          Length = 540

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 21  ERPSIAIKELIENSLDA------ESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQ 73
           E     +  LI+N+L+A      +S+ V       G      I DNG GMTSEE      
Sbjct: 421 EHVVTVVGNLIDNALEASSAWKGKSATVHLSFTDYGDELIMDIEDNGKGMTSEEEAYFFT 480

Query: 74  RHCTSK 79
              T+K
Sbjct: 481 EGATTK 486


>gi|315178623|gb|ADT85537.1| DNA gyrase, subunit B [Vibrio furnissii NCTC 11218]
          Length = 805

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGYCKDIIVTIHED--NSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               +   VR      P+   F  + +    ++   +R ++     VS      + +  +
Sbjct: 159 DTDRSGTMVRF----WPSAETFT-NIEFHYEILAKRLRELSFLNSGVSIKLVDEREDNKQ 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +  S             +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVNHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQESIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|295112251|emb|CBL29001.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Synergistetes bacterium SGP1]
          Length = 513

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 41  RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPS 99
            VE  +   G     ++ D+G G++ +++P    R        D S     G RG  L S
Sbjct: 402 WVEVRLRRRGDEAVIEVQDSGSGISPQDLPHVFDRFY----RADESRARVTGGRGVGL-S 456

Query: 100 IG 101
           I 
Sbjct: 457 IA 458


>gi|260771050|ref|ZP_05879978.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972]
 gi|260613939|gb|EEX39130.1| DNA gyrase subunit B [Vibrio furnissii CIP 102972]
          Length = 781

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 80/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 18  EVVDNSIDEALAGYCKDIIVTIHED--NSVSVSDDGRGIPTELHPEEKVSAAEVIMTVLH 75

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  V 
Sbjct: 76  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGKVHTQTYRHGVPEAPLAVVG 134

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               +   VR      P+   F  + +    ++   +R ++     VS      + +  +
Sbjct: 135 DTDRSGTMVRF----WPSAETFT-NIEFHYEILAKRLRELSFLNSGVSIKLVDEREDNKQ 189

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +  S             +N G     Y F N
Sbjct: 190 DHFMYEGG-IQAFVNHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQESIYCFTN 248

Query: 256 GRTVQD 261
               +D
Sbjct: 249 NIPQRD 254


>gi|60459490|gb|AAX20081.1| DNA gyrase subunit B [Leptospira alexanderi serovar Manzhuang]
 gi|60459492|gb|AAX20082.1| DNA gyrase subunit B [Leptospira alexanderi serovar Mengla]
          Length = 142

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPNNI--IEVKDNGRGIPVD 69


>gi|94310637|ref|YP_583847.1| histidine kinase [Cupriavidus metallidurans CH34]
 gi|93354489|gb|ABF08578.1| putative Histidine kinase [Cupriavidus metallidurans CH34]
          Length = 317

 Score = 44.3 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)

Query: 30  LIENSLDA-------ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA              +     G     + DNG G+   ++    Q   +SK
Sbjct: 180 LLSNALDAVESVRPHGERSASILAQERNGMVVVSVRDNGCGVEPGQLERIFQPFYSSK 237


>gi|332664527|ref|YP_004447315.1| ATP-binding domain-containing protein [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333341|gb|AEE50442.1| ATP-binding region ATPase domain protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 493

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 31  IENSLDAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHT 89
           I+NS+ A+S  +       G  +   I D+G GM+++E+  A++    SK   D      
Sbjct: 38  IDNSVAAKSKNIWIDYDWSGSNTTLSILDDGIGMSNDELIQAMRPG--SKNPLDERASDD 95

Query: 90  FGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIA 122
            G  G  L   S       T++S+           
Sbjct: 96  LGRFGLGLKTASFSQSKKFTVVSKASDCKPAFWTW 130


>gi|303233456|ref|ZP_07320124.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4]
 gi|302480464|gb|EFL43556.1| DNA gyrase, B subunit [Atopobium vaginae PB189-T1-4]
          Length = 648

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +E  +     +   + DNG G+  E
Sbjct: 44 EIVDNSVDEAMAGFCTSIEVTVHPD--NSISVKDNGRGIPVE 83


>gi|238924395|ref|YP_002937911.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
 gi|238876070|gb|ACR75777.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 30  LIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++ +  S+VE    +         ++DNG G+  E+I    +   
Sbjct: 373 LIDNAVKSGGSKVEVSGRLISHSIYRIAVSDNGRGIPPEDIERITEAFY 421


>gi|228470217|ref|ZP_04055124.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3]
 gi|228308168|gb|EEK17031.1| DNA gyrase, B subunit [Porphyromonas uenonis 60-3]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V   I     +  Q+TDNG G+  +
Sbjct: 52 VYEVVDNSIDEALAGYCTEVLVEILPD--NSIQVTDNGRGIPVD 93


>gi|170747435|ref|YP_001753695.1| DNA topoisomerase IV subunit B [Methylobacterium radiotolerans JCM
           2831]
 gi|170653957|gb|ACB23012.1| DNA topoisomerase IV, B subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 686

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S +E  +   G     +TDNG G+  +
Sbjct: 81  EVIDNSMDEAVAGHASFIEVELEESGA--LVVTDNGRGIPVD 120


>gi|145218896|ref|YP_001129605.1| hypothetical protein Cvib_0076 [Prosthecochloris vibrioformis DSM
          265]
 gi|145205060|gb|ABP36103.1| hypothetical protein Cvib_0076 [Chlorobium phaeovibrioides DSM
          265]
          Length = 772

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 16/64 (25%)

Query: 29 ELIENSLDA-------E--S--SRVETVI-----AGGGKSFFQITDNGFGMTSEEIPMAV 72
          EL++NS+DA          +   R++  +        G+    I DN  GM  +++  AV
Sbjct: 29 ELVDNSIDAFIEQVSEGIPAINPRIDVQLPTESQLQSGEGVITIKDNASGMMPDDLKNAV 88

Query: 73 QRHC 76
          +   
Sbjct: 89 RAGY 92


>gi|119385815|ref|YP_916870.1| PAS/PAC sensor signal transduction histidine kinase [Paracoccus
           denitrificans PD1222]
 gi|119376410|gb|ABL71174.1| PAS/PAC sensor signal transduction histidine kinase [Paracoccus
           denitrificans PD1222]
          Length = 444

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 25  IAIKELIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L++N+LDA     + ++   I    G+    I DNG G+      M      T+K
Sbjct: 338 QVVMNLVQNALDAVSETAAPQIALRIMREEGRGVLDIHDNGPGIDEATAAMIFDPFFTTK 397


>gi|325498583|gb|EGC96442.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ECD227]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGNCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|323483424|ref|ZP_08088812.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323691076|ref|ZP_08105358.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323403278|gb|EGA95588.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323504862|gb|EGB20642.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 495

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
           +   I   G      I DNG G+ ++++P    R        D S   + G  G  L SI
Sbjct: 404 INIRIKDDGDFIQIVIEDNGKGIAAKDLPFIFDRFY----RTDSSRNSSKGGSGIGL-SI 458


>gi|283780844|ref|YP_003371599.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283439297|gb|ADB17739.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 753

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 14/61 (22%)

Query: 30  LIENSL---------DAESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++         D    R+E ++         +   DNG GM   ++        T+
Sbjct: 650 LIKNAIESQELSNPKD---RRIEIIVKASTDKRISVIIRDNGCGMQPHQLARIFNPFYTT 706

Query: 79  K 79
           K
Sbjct: 707 K 707


>gi|260775392|ref|ZP_05884289.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608573|gb|EEX34738.1| topoisomerase IV subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 626

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--K 181
              ++        N GT V              +  S       + + +R  A+  P  +
Sbjct: 147 VSDLTVTGTCGRRNKGTSVHFW-------PDAKYFDSANFSVTRLINNLRAKAVLCPGLE 199

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           ++F+     +    +          E +
Sbjct: 200 ITFSDKVNGNEHKWLYEDGLKDYLAEGV 227


>gi|218550279|ref|YP_002384070.1| DNA topoisomerase IV subunit B [Escherichia fergusonii ATCC 35469]
 gi|218357820|emb|CAQ90464.1| DNA topoisomerase IV, subunit B [Escherichia fergusonii ATCC 35469]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGNCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|124004976|ref|ZP_01689819.1| histidine Kinase, putative [Microscilla marina ATCC 23134]
 gi|123989654|gb|EAY29200.1| histidine Kinase, putative [Microscilla marina ATCC 23134]
          Length = 768

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ELI+N+ DA+++ +  V          I DNG GMT +
Sbjct: 30 ELIKNTYDADAT-ICVVYINTNSDKITIIDNGEGMTDD 66


>gi|28211194|ref|NP_782138.1| sensor kinase dpiB [Clostridium tetani E88]
 gi|28203634|gb|AAO36075.1| sensor kinase dpiB [Clostridium tetani E88]
          Length = 538

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDN 59
           +L     N++ + EI       +  L++NS++A     + ++E  I    K     + DN
Sbjct: 416 RLP----NKMNSEEI----CSVVGNLVDNSMEAVEVDGTGKIEIEIRNNDKELFLMVKDN 467

Query: 60  GFGMTSE 66
           G G+  E
Sbjct: 468 GGGIPKE 474


>gi|15833172|ref|NP_311945.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|168747459|ref|ZP_02772481.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754001|ref|ZP_02779008.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760192|ref|ZP_02785199.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767054|ref|ZP_02792061.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773312|ref|ZP_02798319.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781907|ref|ZP_02806914.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785905|ref|ZP_02810912.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797623|ref|ZP_02822630.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|195937177|ref|ZP_03082559.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807253|ref|ZP_03249590.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811986|ref|ZP_03253315.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820772|ref|ZP_03261092.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399667|ref|YP_002272509.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327420|ref|ZP_03443503.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794987|ref|YP_003079824.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228047|ref|ZP_05942328.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254903|ref|ZP_05947436.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284413|ref|YP_003501231.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|13363391|dbj|BAB37341.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           Sakai]
 gi|187770751|gb|EDU34595.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017779|gb|EDU55901.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000532|gb|EDU69518.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358750|gb|EDU77169.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363670|gb|EDU82089.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369291|gb|EDU87707.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373910|gb|EDU92326.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379786|gb|EDU98202.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|208727054|gb|EDZ76655.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733263|gb|EDZ81950.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740895|gb|EDZ88577.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161067|gb|ACI38500.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759538|gb|ACI78081.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759540|gb|ACI78082.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759542|gb|ACI78083.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759544|gb|ACI78084.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|209759546|gb|ACI78085.1| DNA topoisomerase IV subunit B [Escherichia coli]
 gi|217319787|gb|EEC28212.1| DNA topoisomerase IV, B subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594387|gb|ACT73748.1| DNA topoisomerase IV, subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|290764286|gb|ADD58247.1| DNA topoisomerase IV, B subunit [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189386|gb|EFW64045.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. EC1212]
 gi|320640109|gb|EFX09681.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           G5101]
 gi|320645406|gb|EFX14415.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str.
           493-89]
 gi|320650718|gb|EFX19175.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H- str. H
           2687]
 gi|320656412|gb|EFX24319.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661785|gb|EFX29193.1| DNA topoisomerase IV subunit B [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666937|gb|EFX33913.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337739|gb|EGD61573.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1125]
 gi|326347303|gb|EGD71028.1| Topoisomerase IV subunit B [Escherichia coli O157:H7 str. 1044]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGNCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|94986414|ref|YP_605778.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
 gi|94556695|gb|ABF46609.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
          Length = 524

 Score = 44.3 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA--GGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +R    I  L+ N+L A +  V        GG+     + D+G G+ SE +     R  
Sbjct: 406 DRLKQVIINLVGNALKAGARHVTLGSQPAEGGREVRLWVQDDGPGIPSEHLARLFDRFY 464


>gi|320332967|ref|YP_004169678.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754256|gb|ADV66013.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 634

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R +  +  L+ N++ A      SRV   +    G++  ++TD+G G+ +  +P   +   
Sbjct: 530 RFTQVVTNLVVNAIHACEGGRGSRVTVTLDRVQGRTELRVTDDGSGIPASVLPRIFEPMF 589

Query: 77  TSK 79
           T+K
Sbjct: 590 TTK 592


>gi|319407928|emb|CBI81582.1| two-component sensor kinase BatS [Bartonella schoenbuchensis R1]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 22  RPSIAIKELIENS---LDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  LIEN+   +   +  +   +     +    + DNG G+ SE I    +R  T
Sbjct: 478 RLGQVISNLIENARSFIPHNNGEIRITMKNNASTLTLTVEDNGPGIRSESIDHIFERFYT 537

Query: 78  SKISDDFSNIHTFG 91
            + ++D     TFG
Sbjct: 538 DRPNED-----TFG 546


>gi|313674412|ref|YP_004052408.1| DNA gyrase subunit b [Marivirga tractuosa DSM 4126]
 gi|312941110|gb|ADR20300.1| DNA gyrase subunit B [Marivirga tractuosa DSM 4126]
          Length = 653

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   + D+G G+  +
Sbjct: 48 EVVDNSIDEAMAGHCTTITVEINED--NSVTVMDDGRGIPVD 87


>gi|300814729|ref|ZP_07094977.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300511116|gb|EFK38368.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++ VI   G     + DNG G+  E
Sbjct: 42 VYEVVDNSIDEALAGICDHIKIVITKDG--SCYVEDNGSGIPVE 83


>gi|237509840|ref|ZP_04522555.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei MSHR346]
 gi|235002045|gb|EEP51469.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei MSHR346]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|255280984|ref|ZP_05345539.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255268432|gb|EET61637.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 330

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 26  AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            I++L+ N+L    +  +    A GG+ F  I D G G+++E++P   ++  T
Sbjct: 228 VIEQLLSNALKYTNAGTISIYGAEGGQGFV-IEDTGIGISAEDLPRIFEKGYT 279


>gi|217422805|ref|ZP_03454307.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|217393713|gb|EEC33733.1| sensor histidine kinase [Burkholderia pseudomallei 576]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|167904953|ref|ZP_02492158.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|167896589|ref|ZP_02483991.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 7894]
 gi|167921219|ref|ZP_02508310.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei BCC215]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|124381146|ref|YP_001025312.1| C4-dicarboxylate transport sensor protein dctB [Burkholderia mallei
           NCTC 10229]
          Length = 322

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 208 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 263


>gi|9955557|emb|CAC05441.1| putative protein [Arabidopsis thaliana]
          Length = 706

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           EL++NSLD     ++ V          GKS    + DNG GM        +    + K
Sbjct: 123 ELLDNSLDEVSNGATYVHVDSTINKRDGKSSILIVEDNGGGMNPSTFRECLSLGYSRK 180


>gi|126456247|ref|YP_001074125.1| C4-dicarboxylate transport sensor kinase [Burkholderia pseudomallei
           1106a]
 gi|242312033|ref|ZP_04811050.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|126230015|gb|ABN93428.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242135272|gb|EES21675.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|126444570|ref|YP_001061107.1| sensor histidine kinase [Burkholderia pseudomallei 668]
 gi|126224061|gb|ABN87566.1| sensor histidine kinase [Burkholderia pseudomallei 668]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|76818694|ref|YP_336729.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 1710b]
 gi|167740942|ref|ZP_02413716.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 14]
 gi|167848036|ref|ZP_02473544.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei B7210]
 gi|167913271|ref|ZP_02500362.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 112]
 gi|254192087|ref|ZP_04898585.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|254195522|ref|ZP_04901950.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|254263094|ref|ZP_04953959.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
 gi|254299796|ref|ZP_04967245.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|76583167|gb|ABA52641.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 1710b]
 gi|157809488|gb|EDO86658.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|157987567|gb|EDO95334.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|169652269|gb|EDS84962.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|254214096|gb|EET03481.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|167721978|ref|ZP_02405214.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei DM98]
 gi|167826512|ref|ZP_02457983.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 9]
 gi|226193569|ref|ZP_03789174.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|254183000|ref|ZP_04889593.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|184213534|gb|EDU10577.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|225934451|gb|EEH30433.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
          Length = 643

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 584


>gi|121596554|ref|YP_990829.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Burkholderia mallei SAVP1]
 gi|121224352|gb|ABM47883.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Burkholderia mallei SAVP1]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 196 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPRLFEPFFTTK 251


>gi|329938633|ref|ZP_08288029.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045]
 gi|329302124|gb|EGG46016.1| DNA gyrase subunit B [Streptomyces griseoaurantiacus M045]
          Length = 691

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 72  VYEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 111


>gi|327188808|gb|EGE56002.1| putative chemotaxis two-component sensor histidine kinase protein
           [Rhizobium etli CNPAF512]
          Length = 702

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLDAE----SSRV--------ETVI---AGGGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D      + RV          ++     GG+    I D+G G
Sbjct: 414 TVIERLADPLVHLVRNSIDHGLEMPADRVAAGKTEAGTVILSARQAGGEVIISIKDDGRG 473

Query: 63  MTSE 66
           +  E
Sbjct: 474 INRE 477


>gi|326796567|ref|YP_004314387.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1]
 gi|326547331|gb|ADZ92551.1| DNA topoisomerase IV, B subunit [Marinomonas mediterranea MMB-1]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + ++E  +   G     + DNG GM  +
Sbjct: 31 TRPNHLGQEVIDNSVDEALAGHADKIEVTLYKDG--SLSVEDNGRGMPVD 78


>gi|319404202|emb|CBI77795.1| topoisomerase protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 692

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P
Sbjct: 89  EIIDNAMDEAVAGYADLIDVSLDEQG--YLTVTDNGRGIPVENHP 131


>gi|317493396|ref|ZP_07951817.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918339|gb|EFV39677.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 631

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +SRVE ++        ++ D+G GM      EE    I
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHASRVEVILYPD--QSLEVIDDGRGMPVDIHPEEGVPAI 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYQMAFENGDK 147

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                                +        F  S +   + +  +++  A+  P V   F
Sbjct: 148 VEDLHVTGTCGKRNTGTSVHFW----PDEQFFDSPKFSVSRLNHLLKAKAVLCPGVEIVF 203

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +             E ++ +
Sbjct: 204 KDKLNNTEQRWCYQDGLTDYLMEAVNGL 231


>gi|313676741|ref|YP_004054737.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
 gi|312943439|gb|ADR22629.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
          Length = 407

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 16/61 (26%)

Query: 26  AIKELIENSLDA--ESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
            I+ L +N++DA      +   +  G  G +   + D G G+ S            SKI 
Sbjct: 308 VIENLCKNAIDAMSGEGEITITLKEGKYGDALIDVKDTGKGIPS------------SKIK 355

Query: 82  D 82
           +
Sbjct: 356 E 356


>gi|311337325|gb|ADP89912.1| DNA gyrase subunit B [Amycolatopsis marina]
          Length = 470

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 26/160 (16%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT----SEE----IPMAVQ-R 74
           E+++NS+D   A  +++VE  + A GG    ++ D+G G+      +E    + + +   
Sbjct: 9   EVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVGMHPKEKRPTLEIVLTVL 65

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTGAQIAISGEKISSV 131
           H   K   D   + + G  G  +  + A+S    + + +    +    +      K   +
Sbjct: 66  HAGGKFDSDSYAV-SGGLHGVGVSVVNALSRRLDVEVHT----DGRIWRQQYDHSKPGEL 120

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
                   T   +   +           S +  +  + ++
Sbjct: 121 IDAGPASRTGTSLT-FWADPEIFETTHYSVETVSRRLQEM 159


>gi|294630343|ref|ZP_06708903.1| DNA gyrase, B subunit [Streptomyces sp. e14]
 gi|292833676|gb|EFF92025.1| DNA gyrase, B subunit [Streptomyces sp. e14]
          Length = 685

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 66  VYEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 105


>gi|311741764|ref|ZP_07715575.1| sensor histidine kinase [Aeromicrobium marinum DSM 15272]
 gi|311314770|gb|EFQ84676.1| sensor histidine kinase [Aeromicrobium marinum DSM 15272]
          Length = 380

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 23  PSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
              A+  L+EN++      + RV    A  G+     + DNG G+ S E+    +R  
Sbjct: 265 LHAAVSNLVENAVTYSPEGA-RVAVTAARDGEDVKITVADNGIGIPSSELDRIFERFY 321


>gi|302552701|ref|ZP_07305043.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302470319|gb|EFL33412.1| DNA gyrase, B subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 690

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 71  VYEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 110


>gi|302535567|ref|ZP_07287909.1| DNA gyrase subunit B [Streptomyces sp. C]
 gi|302444462|gb|EFL16278.1| DNA gyrase subunit B [Streptomyces sp. C]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 46 VYEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 85


>gi|186522498|ref|NP_196817.2| ATP binding [Arabidopsis thaliana]
 gi|332004471|gb|AED91854.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 708

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           EL++NSLD     ++ V          GKS    + DNG GM        +    + K
Sbjct: 123 ELLDNSLDEVSNGATYVHVDSTINKRDGKSSILIVEDNGGGMNPSTFRECLSLGYSRK 180


>gi|161898000|gb|ABX80109.1| DNA gyrase subunit B [Streptomyces caelestis]
          Length = 485

 Score = 44.3 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 17 VYEVVDNSVDEALAGHADTIDVTILADGG---VRVVDNGRGIP 56


>gi|308275291|emb|CBX31887.1| hypothetical protein N47_O13060 [uncultured Desulfobacterium sp.]
          Length = 502

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 31 IENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEI 68
          I+NS+ AE+ ++        G  +  I D+G GMT +E+
Sbjct: 33 IDNSITAEAGQINIRFAWNSGNPWLAIIDDGSGMTKDEL 71


>gi|240116103|ref|ZP_04730165.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|260440087|ref|ZP_05793903.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
 gi|268601769|ref|ZP_06135936.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|291043375|ref|ZP_06569098.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
 gi|268585900|gb|EEZ50576.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID18]
 gi|291012981|gb|EFE04964.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI2]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE     
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVA 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|188996890|ref|YP_001931141.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931957|gb|ACD66587.1| DNA gyrase, B subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 812

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  +  ++   G     + D+G G+  +
Sbjct: 50 EIVDNAVDEAMAGYAKNISVILHQDG--SVTVEDDGRGIPVD 89


>gi|172037838|ref|YP_001804339.1| heat shock protein 90 [Cyanothece sp. ATCC 51142]
 gi|171699292|gb|ACB52273.1| heat shock protein Hsp90 [Cyanothece sp. ATCC 51142]
          Length = 664

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 77/286 (26%), Gaps = 47/286 (16%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N++DA S                   +   +    K+   I DNG GMT +EI 
Sbjct: 32  LRELISNAVDAISKLKMASLAGELSGDVPEPEITITVDKSNKTL-SIYDNGIGMTVDEIK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTG 118
             + +   S          K ++D       GF      S   V+  + + +       G
Sbjct: 91  KYINQVAFSSAEEFVQKYQKSANDLIGHFGLGF-----YSAFMVAKQVEIDT--LSYKEG 143

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
           A+        S    +  +  T +        +     +L+        I  +++  +  
Sbjct: 144 AKAVHWSCDGSPEFEITESSKTQIGTTITLTLMDDEQEYLEP-----QRIRQLVKTYSDF 198

Query: 179 YP-KVSFTFSTIKSNRYKMNFQS---TNGNFPERISQVIGEDFINNAVELNEKSNEITLQ 234
            P  + F   TI   +          T+ ++ E    +                    L 
Sbjct: 199 VPVPIKFENETINRQKALWKESPQNLTDEDYLEFYRYLYPFQEDPLLWVHLNTDYPYLLN 258

Query: 235 GYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           G    P                      F+         E +   R
Sbjct: 259 GILYFPKLRPDVDVSQGHI--KLFCNQVFVNDHCEEIIPEFLMPLR 302


>gi|297582344|ref|YP_003698124.1| DNA gyrase subunit B [Bacillus selenitireducens MLS10]
 gi|297140801|gb|ADH97558.1| DNA gyrase, B subunit [Bacillus selenitireducens MLS10]
          Length = 637

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I     +   + D+G G+ 
Sbjct: 44 EIVDNSIDEAMAGHCSHIWVTIEED--NTITVEDDGRGIP 81


>gi|17230717|ref|NP_487265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132320|dbj|BAB74924.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 986

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 30  LIENSLDA-------E----SS-RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           LI N++DA            ++  +               I+DNG G+  E +       
Sbjct: 878 LISNAIDALDESVIGGQLSVATPTICIRSEMFNNNLVRITISDNGVGIPPEILSKLFDPF 937

Query: 76  CTSK 79
            T+K
Sbjct: 938 FTTK 941


>gi|319638655|ref|ZP_07993415.1| topoisomerase IV subunit B [Neisseria mucosa C102]
 gi|317400039|gb|EFV80700.1| topoisomerase IV subunit B [Neisseria mucosa C102]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIPIGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|309378433|emb|CBX22928.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|304394414|ref|ZP_07376337.1| DNA gyrase, B subunit [Ahrensia sp. R2A130]
 gi|303293854|gb|EFL88231.1| DNA gyrase, B subunit [Ahrensia sp. R2A130]
          Length = 858

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 83/248 (33%), Gaps = 20/248 (8%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++N +D   A  +  V   I   G     +TDNG G+      EE   A +     
Sbjct: 92  VYEVVDNGIDEVLAGHADAVNVTINNDG--SVTVTDNGRGIPVDMHEEEGMSAAEVIMTQ 149

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K   +   + + G  G  +  + A+S ++L  R  +N+   +I+ +         
Sbjct: 150 LHAGGKFDQNSYKV-SGGLHGVGVSVVNALS-VSLKLRIARNDKWHEISFTHGVSDGPLE 207

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           +  +        +L F +P+   F  + + + + +   +R +A          S  +   
Sbjct: 208 IVGDAEAGYSGTELTF-MPSSETFT-NIKFDFDRLEHRLRELAFLNSGCRIILSDDRGGA 265

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K       G   E +  +           +  KS    +     +  +N         F
Sbjct: 266 DKQTELYYEGGLKEFVRYLDRAKGALIEAPIYLKSERDGITVELAL-WWNDSYNENVLCF 324

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 325 TNNIPQRD 332


>gi|302336829|ref|YP_003802035.1| heat shock protein Hsp90 [Spirochaeta smaragdinae DSM 11293]
 gi|301634014|gb|ADK79441.1| Heat shock protein Hsp90 [Spirochaeta smaragdinae DSM 11293]
          Length = 623

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 42/163 (25%)

Query: 19  IIERPSI----AIKELIENSLDA-----------ES-------SRVETVIAGGGKSFFQI 56
           II          ++EL+ N+ DA           ++        +++            I
Sbjct: 17  IIHSLYSHKEIFLRELVSNASDALDKLKYLTLTDDAYKEIAFDPKIDISFRESPSKTITI 76

Query: 57  TDNGFGMTSEEIPM---AVQRHCTSKISDDFSN--------IHTF--GFRGEALPSIGAV 103
           +D+G GM  E++      + R  T    D  S         I  F  GF      S   V
Sbjct: 77  SDDGIGMNKEDLTNQLGTIARSGTKAFIDQLSGDAKKDANLIGQFGVGF-----YSCFMV 131

Query: 104 S-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-NPGTIVEV 144
           +  + +++R             G+   ++       PGT + +
Sbjct: 132 ADRVEVLTRKAGEEQAWLWKSDGKSNFTIEEGQREEPGTTITL 174


>gi|291529350|emb|CBK94936.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 476

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 30  LIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++ +  S+V+    +         ++DNG G+  E+I    +   
Sbjct: 373 LIDNAVKSGGSKVDVSGRLISHSIYRIAVSDNGRGIPPEDIERITEAFY 421


>gi|317047810|ref|YP_004115458.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Pantoea sp. At-9b]
 gi|316949427|gb|ADU68902.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Pantoea sp. At-9b]
          Length = 564

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+EN+LDA S +    +  ++    G    +++D+G G+  + +P    +  ++K
Sbjct: 463 LVENALDALSEQTDGEIHVMLHYQNGWLACEVSDDGPGIDPDVLPTIFDKGFSTK 517


>gi|254494123|ref|ZP_05107294.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291]
 gi|226513163|gb|EEH62508.1| topoisomerase IV subunit B [Neisseria gonorrhoeae 1291]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|255659815|ref|ZP_05405224.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544]
 gi|260847890|gb|EEX67897.1| DNA gyrase, B subunit [Mitsuokella multacida DSM 20544]
          Length = 688

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     ++  I     +   + DNG G+  +
Sbjct: 95  VYEVVDNSIDEALAGYCDHIDVTIHKD--NSITVVDNGRGIPVD 136


>gi|194099098|ref|YP_002002183.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|239999404|ref|ZP_04719328.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|240014581|ref|ZP_04721494.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae DGI18]
 gi|240017026|ref|ZP_04723566.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA6140]
 gi|240081338|ref|ZP_04725881.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|240113547|ref|ZP_04728037.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|240118387|ref|ZP_04732449.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|240121103|ref|ZP_04734065.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID24-1]
 gi|240123932|ref|ZP_04736888.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|240126132|ref|ZP_04739018.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|240128609|ref|ZP_04741270.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|268595224|ref|ZP_06129391.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|268597440|ref|ZP_06131607.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|268599612|ref|ZP_06133779.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|268604099|ref|ZP_06138266.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|268682557|ref|ZP_06149419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|268684718|ref|ZP_06151580.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268686997|ref|ZP_06153859.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|293398679|ref|ZP_06642857.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62]
 gi|193934388|gb|ACF30212.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae NCCP11945]
 gi|268548613|gb|EEZ44031.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae 35/02]
 gi|268551228|gb|EEZ46247.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA19]
 gi|268583743|gb|EEZ48419.1| topoisomerase IV subunit B [Neisseria gonorrhoeae MS11]
 gi|268588230|gb|EEZ52906.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID1]
 gi|268622841|gb|EEZ55241.1| topoisomerase IV subunit B [Neisseria gonorrhoeae PID332]
 gi|268625002|gb|EEZ57402.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-92-679]
 gi|268627281|gb|EEZ59681.1| topoisomerase IV subunit B [Neisseria gonorrhoeae SK-93-1035]
 gi|291611150|gb|EFF40247.1| topoisomerase IV subunit B [Neisseria gonorrhoeae F62]
 gi|317164652|gb|ADV08193.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|187735779|ref|YP_001877891.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425831|gb|ACD05110.1| DNA gyrase, B subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 852

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 21 ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ER     + E+++NS+D   A   S+++ VI   G     I DNG G+  +
Sbjct: 48 ERGLHHCVFEVLDNSIDEHLAGYCSKIDIVIHVDG--SISIVDNGRGIPVD 96


>gi|149371970|ref|ZP_01891289.1| two-component sensor histidine kinase, phosphate regulation
           [unidentified eubacterium SCB49]
 gi|149355110|gb|EDM43671.1| two-component sensor histidine kinase, phosphate regulation
           [unidentified eubacterium SCB49]
          Length = 287

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 20  IERPSIAIKELIENSLD----AESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           +ER    +  L++NS+     A ++ V     +    K+  +ITDNG G+    +    +
Sbjct: 176 VERIQQVLTNLLDNSIKYGKKAGTTEVSIEGLMKD--KTIVRITDNGVGIEQSYLTRIFE 233

Query: 74  RH 75
           R 
Sbjct: 234 RF 235


>gi|62182624|ref|YP_219041.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130257|gb|AAX67960.1| sensory kinase in two component regulatory system with HydG
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717121|gb|EFZ08692.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 554

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 446 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 503

Query: 75  HCTSK 79
           + T+K
Sbjct: 504 YFTTK 508


>gi|59801683|ref|YP_208395.1| DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA 1090]
 gi|59718578|gb|AAW89983.1| putative DNA topoisomerase IV subunit B [Neisseria gonorrhoeae FA
          1090]
          Length = 661

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|56751624|ref|YP_172325.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
 gi|81301300|ref|YP_401508.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
 gi|25019687|gb|AAN71773.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
 gi|56686583|dbj|BAD79805.1| DNA gyrase B subunit [Synechococcus elongatus PCC 6301]
 gi|81170181|gb|ABB58521.1| DNA gyrase subunit B [Synechococcus elongatus PCC 7942]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + ++  +   G    Q+TDNG G+ ++
Sbjct: 39 VYEVVDNAVDEALAGYCNTIDVRLLEDG--SCQVTDNGRGIPTD 80


>gi|23978237|dbj|BAC21113.1| DNA gyrase B subunit [Synechococcus leopoliensis]
 gi|31071469|dbj|BAC76783.1| DNA gyrase B subunit [Synechococcus sp. PCC 7942]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + ++  +   G    Q+TDNG G+ ++
Sbjct: 10 VYEVVDNAVDEALAGYCNTIDVRLLEDG--SCQVTDNGRGIPTD 51


>gi|85707844|ref|ZP_01038910.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
 gi|85689378|gb|EAQ29381.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
          Length = 528

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
           R    ++ L++N++     DA    +E  I   G      + D+G G+  E      QR 
Sbjct: 418 RLERVVENLLDNAVSFSPPDA---PIEVAIDNDGNCVTLTVCDSGPGIPEESREKVFQRF 474

Query: 76  C 76
            
Sbjct: 475 H 475


>gi|150014898|ref|YP_001307152.1| DNA gyrase subunit B [Clostridium beijerinckii NCIMB 8052]
 gi|149901363|gb|ABR32196.1| DNA gyrase, B subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 635

 Score = 44.3 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   +++E  I     +   + D+G GM 
Sbjct: 42 VYEIVDNSIDEALAGYCNKIEVYINED--NSITVNDDGRGMP 81


>gi|311064942|ref|YP_003971668.1| phosphate regulon sensor protein PhoR [Bifidobacterium bifidum
           PRL2010]
 gi|310867262|gb|ADP36631.1| Phosphate regulon sensor protein PhoR [Bifidobacterium bifidum
           PRL2010]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 21  ERPSIAIKELIENSLDAES---SRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E  ++A+K L+EN++   S   + V   +           ++ D G G+ S  +    +R
Sbjct: 308 ETLTMAVKNLVENAI-RYSPEYTTVSVSVSLCKDPSSMTIRVIDQGIGIPSASLDRVFER 366

Query: 75  HC 76
             
Sbjct: 367 FY 368


>gi|310288068|ref|YP_003939327.1| phosphate regulon sensor protein [Bifidobacterium bifidum S17]
 gi|309252005|gb|ADO53753.1| Phosphate regulon sensor protein [Bifidobacterium bifidum S17]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 21  ERPSIAIKELIENSLDAES---SRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E  ++A+K L+EN++   S   + V   +           ++ D G G+ S  +    +R
Sbjct: 308 ETLTMAVKNLVENAI-RYSPEYTTVSVSVSLCKDPSSMTIRVIDQGIGIPSASLDRVFER 366

Query: 75  HC 76
             
Sbjct: 367 FY 368


>gi|300853238|ref|YP_003778222.1| DNA gyrase subunit B [Clostridium ljungdahlii DSM 13528]
 gi|300433353|gb|ADK13120.1| DNA gyrase, subunit B [Clostridium ljungdahlii DSM 13528]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    ++  +I     +   +TDNG GM 
Sbjct: 43 VYEIVDNSIDEALAGYCDKINVIIHKD--NSITVTDNGRGMP 82


>gi|288801620|ref|ZP_06407062.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
 gi|288335662|gb|EFC74095.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E ++NS+D   A     +E  I     +   + D+G G+  +
Sbjct: 47 ETVDNSIDEAMAGYCQNIEVTINED--NSITVEDDGRGIPVD 86


>gi|302344968|ref|YP_003813321.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
 gi|302149978|gb|ADK96240.1| DNA gyrase, B subunit [Prevotella melaninogenica ATCC 25845]
          Length = 657

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E ++NS+D   A     +E  I     +   + D+G G+  +
Sbjct: 47 ETVDNSIDEAMAGYCQNIEVTINED--NSITVEDDGRGIPVD 86


>gi|256826465|ref|YP_003150424.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
 gi|256582608|gb|ACU93742.1| DNA gyrase subunit B [Cryptobacterium curtum DSM 15641]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I   G    ++ DNG G+  +
Sbjct: 43 VYEVVDNSVDEALAGYCTDIQVWICDDG--SIKVQDNGRGIPVD 84


>gi|224283667|ref|ZP_03646989.1| histidine kinase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140823|ref|ZP_07803016.1| histidine kinase sensor of two-component system protein
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313133333|gb|EFR50950.1| histidine kinase sensor of two-component system protein
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 451

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 21  ERPSIAIKELIENSLDAES---SRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E  ++A+K L+EN++   S   + V   +           ++ D G G+ S  +    +R
Sbjct: 308 ETLTMAVKNLVENAI-RYSPEYTTVSVSVSLCKDPSSMTIRVIDQGIGIPSASLDRVFER 366

Query: 75  HC 76
             
Sbjct: 367 FY 368


>gi|46579358|ref|YP_010166.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603083|ref|YP_967483.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46448772|gb|AAS95425.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563312|gb|ABM29056.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311233184|gb|ADP86038.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 810

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA         +   +   G +    + DNG G+ ++ +        T+K
Sbjct: 703 LLLNAIDALTGEDG--LIRIRLRSHGLNVRIDVEDNGLGVETDALQRVFDPFYTTK 756


>gi|87124437|ref|ZP_01080286.1| heat shock protein HtpG [Synechococcus sp. RS9917]
 gi|86168009|gb|EAQ69267.1| heat shock protein HtpG [Synechococcus sp. RS9917]
          Length = 636

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 17/59 (28%)

Query: 27 IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
          ++EL+ NS DA S R                ++  I    K    ++DNG GMT++E+ 
Sbjct: 30 LRELVSNSSDAISKRRMASMAGDCSEGSDGLIQIRIDR-EKKTITVSDNGIGMTADEVK 87


>gi|167036441|ref|YP_001664019.1| DNA gyrase subunit B [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751447|ref|ZP_05492325.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|320114866|ref|YP_004185025.1| DNA topoisomerase IV subunit B [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855275|gb|ABY93683.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749666|gb|EEU62692.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|319927957|gb|ADV78642.1| DNA topoisomerase IV, B subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 633

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A     +   I     +   + D+G G+ ++  P   +         
Sbjct: 41  VYEVVDNSIDEALAGYCKNIVVTIHKD--NSITVEDDGRGIPTDIHPKVRKPAVEVALTM 98

Query: 75  -HCTSKISDDFSNIH 88
            H   K ++D   + 
Sbjct: 99  LHAGGKFNNDAYKVS 113


>gi|118578453|ref|YP_899703.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379]
 gi|118501163|gb|ABK97645.1| DNA gyrase subunit B [Pelobacter propionicus DSM 2379]
          Length = 802

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I   G     + DNG G+ ++
Sbjct: 49 VYEIVDNSIDEALAGHCDNISVTINVDG--SVTVIDNGRGIPTD 90


>gi|57504599|ref|ZP_00370711.1| DNA gyrase, B subunit [Campylobacter coli RM2228]
 gi|57019494|gb|EAL56188.1| DNA gyrase, B subunit [Campylobacter coli RM2228]
          Length = 770

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDIEITTEG--SCIVSDNGRGIPVD 80


>gi|311899345|dbj|BAJ31753.1| putative chaperone protein HtpG [Kitasatospora setae KM-6054]
          Length = 614

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 36/149 (24%)

Query: 27  IKELIENS---LD----AESS---------RVETVIAGGGKSFFQITDNGFGMTSEE--- 67
           ++ELI N+   LD    A  +          +        ++   + DNG GMT +E   
Sbjct: 31  LRELISNASDALDKRRLAGLTDERLRVEDPHIAVETDQRARTL-TVRDNGIGMTRDEVVG 89

Query: 68  IPMAVQRHCT---------SKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
           +   + R  T         SK   +       GF      S   V+  +TL++R     T
Sbjct: 90  LIGTIARSGTAETLRRLRESKEPAELIGQFGVGF-----YSTFMVADKVTLVTRKAGEET 144

Query: 118 GAQIAISGEKISSVRPV-AMNPGTIVEVR 145
           G +   +GE   ++  V     GT V V 
Sbjct: 145 GTRWESAGEGTYTLETVEDAPEGTAVTVH 173


>gi|260463892|ref|ZP_05812088.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259030267|gb|EEW31547.1| DNA topoisomerase IV, B subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  ++  G  +  +TDNG G+  +
Sbjct: 82  EVIDNSMDEAVAGHATFIDVELSADG--YLSVTDNGRGIPVD 121


>gi|161505339|ref|YP_001572451.1| sensor protein ZraS [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866686|gb|ABX23309.1| hypothetical protein SARI_03484 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 487

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 379 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 436

Query: 75  HCTSK 79
           + T+K
Sbjct: 437 YFTTK 441


>gi|53804914|ref|YP_113266.1| sensory box histidine kinase [Methylococcus capsulatus str. Bath]
 gi|53758675|gb|AAU92966.1| sensory box histidine kinase [Methylococcus capsulatus str. Bath]
          Length = 522

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 23/97 (23%)

Query: 3   IRKLSEKIINQIAAGEIIE---------------RPSIAIKELIENSLD--AESSRVETV 45
           I  L+E++   +A+G ++E               R     K+LIEN++D  A S R E  
Sbjct: 371 ITLLTERL---LASGIVVEWVPTPVLPSLKGSENRLRSLFKQLIENAIDAMAHSRRRELR 427

Query: 46  IAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I    +       I D G G+ +       +   T+K
Sbjct: 428 ILTWTRDQLIHITIEDTGPGIPAGLRTQVFEPFFTTK 464


>gi|16332281|ref|NP_443009.1| heat shock protein 90 [Synechocystis sp. PCC 6803]
 gi|1653911|dbj|BAA18821.1| heat shock protein [Synechocystis sp. PCC 6803]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 36/149 (24%)

Query: 27  IKELIENSLDAESSR-----------------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N++DA S R                 +  V+    K+   ITDNG GMT++E+ 
Sbjct: 32  LRELISNAVDAISKRKMAAFASDGSGEVPDPQITLVVDKVNKTL-SITDNGIGMTADEVK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVS-HLTL--MSRPPQNN 116
             + +   S          K ++D       GF      S   VS  + +  +S      
Sbjct: 91  KYINQVAFSSAEEFIEKFQKSANDLIGHFGLGF-----YSAFMVSQKVEIDTLSYQEGAQ 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVR 145
                     +           GT V + 
Sbjct: 146 AVHWSCDGSPEFELTDSDRQQVGTTVTLT 174


>gi|83858465|ref|ZP_00951987.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633]
 gi|83853288|gb|EAP91140.1| DNA topoisomerase IV subunit B [Oceanicaulis alexandrii HTCC2633]
          Length = 712

 Score = 43.9 bits (102), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  + R+E  +   G  F  ++DNG G+  +
Sbjct: 107 EILDNSMDEAVAGHADRIEVTMDEDG--FVSVSDNGRGIPVD 146


>gi|332520119|ref|ZP_08396583.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044678|gb|EGI80872.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 30  LIENSLDA----ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA     S  ++   +    K    +TD G G+T ++     +   T+K
Sbjct: 292 LVKNAIDAMKGKGSLTIKISNLEN--KVLIMVTDTGKGLTKKQFNSIFEPGYTTK 344


>gi|325478580|gb|EGC81692.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 441

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 17  GEIIERP-SIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
            +II+   + AIK     ++D     ++ V+    K+   +I DNG G+  +++ M  +R
Sbjct: 337 SQIIQNLLTNAIK-----AIDRN-GHIDIVLTENNKNITIKIKDNGIGIDEDKLNMIFER 390

Query: 75  HCTSKISDDFSNIHTFG 91
               +I DD  N  T G
Sbjct: 391 FY--RI-DDSRNTKTNG 404


>gi|306844398|ref|ZP_07476988.1| DNA gyrase, B subunit [Brucella sp. BO1]
 gi|306275211|gb|EFM56961.1| DNA gyrase, B subunit [Brucella sp. BO1]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|302670820|ref|YP_003830780.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus
          B316]
 gi|302395293|gb|ADL34198.1| DNA topoisomerase IV subunit B ParE [Butyrivibrio proteoclasticus
          B316]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 17 GEIIER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          G +  R  +  + E+++N++D   A   +++   +   G +   + DNG G+ 
Sbjct: 30 GSVTTRGLNHLVYEIVDNAVDEHLAGFCTQIHVTLEADGSA--TVEDNGRGIP 80


>gi|283778833|ref|YP_003369588.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068]
 gi|283437286|gb|ADB15728.1| DNA gyrase, B subunit [Pirellula staleyi DSM 6068]
          Length = 830

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 13/53 (24%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
          + E+++NS+D   A  + +V  ++   G     + D+G G+        V+RH
Sbjct: 48 VYEVVDNSIDEAMAGHAKQVSVIVNTDG--SVTVEDDGRGIP-------VERH 91


>gi|254718345|ref|ZP_05180156.1| DNA gyrase subunit B [Brucella sp. 83/13]
 gi|265983305|ref|ZP_06096040.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13]
 gi|306839568|ref|ZP_07472374.1| DNA gyrase, B subunit [Brucella sp. NF 2653]
 gi|306842586|ref|ZP_07475236.1| DNA gyrase, B subunit [Brucella sp. BO2]
 gi|264661897|gb|EEZ32158.1| hypothetical protein BAKG_01418 [Brucella sp. 83/13]
 gi|306287282|gb|EFM58768.1| DNA gyrase, B subunit [Brucella sp. BO2]
 gi|306405354|gb|EFM61627.1| DNA gyrase, B subunit [Brucella sp. NF 2653]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|254713300|ref|ZP_05175111.1| DNA gyrase subunit B [Brucella ceti M644/93/1]
 gi|254716346|ref|ZP_05178157.1| DNA gyrase subunit B [Brucella ceti M13/05/1]
 gi|261218128|ref|ZP_05932409.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1]
 gi|261321025|ref|ZP_05960222.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260923217|gb|EEX89785.1| hypothetical protein BAJG_01573 [Brucella ceti M13/05/1]
 gi|261293715|gb|EEX97211.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|254690434|ref|ZP_05153688.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
 gi|260755982|ref|ZP_05868330.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
 gi|260676090|gb|EEX62911.1| DNA gyrase subunit B [Brucella abortus bv. 6 str. 870]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|226362904|ref|YP_002780684.1| hypothetical protein ROP_34920 [Rhodococcus opacus B4]
 gi|226241391|dbj|BAH51739.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 943

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 16  AGEIIERPSIAIKELIENSLDAES--SRVETVIA---GGGKSFFQITDNGFGMTSEEIPM 70
           +G ++      + EL++NSL A    + V    A    GG    +I D G G+ ++++  
Sbjct: 513 SGTVVTDVVHLLAELVDNSLRASPPDTVVTFSFARAVDGGV-LLEIADRGIGIPADDMRA 571

Query: 71  AVQRHC 76
             +R  
Sbjct: 572 VNERLA 577


>gi|206603013|gb|EDZ39493.1| Putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 546

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 31  IENSLDA-ESS-RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +EN+LDA  S   +    +   G     + D+G G+  E      +   T+K
Sbjct: 441 LENALDATGSGGSIRIRCLEEEGFLSLHVQDSGPGIPPESRERIFEPFFTTK 492


>gi|189023380|ref|YP_001934148.1| DNA gyrase subunit B [Brucella abortus S19]
 gi|225626666|ref|ZP_03784705.1| DNA gyrase, B subunit [Brucella ceti str. Cudo]
 gi|237814597|ref|ZP_04593595.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A]
 gi|254694923|ref|ZP_05156751.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254696550|ref|ZP_05158378.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700937|ref|ZP_05162765.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|254707179|ref|ZP_05169007.1| DNA gyrase subunit B [Brucella pinnipedialis M163/99/10]
 gi|254709277|ref|ZP_05171088.1| DNA gyrase subunit B [Brucella pinnipedialis B2/94]
 gi|254731465|ref|ZP_05190043.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|256030800|ref|ZP_05444414.1| DNA gyrase subunit B [Brucella pinnipedialis M292/94/1]
 gi|256060267|ref|ZP_05450442.1| DNA gyrase subunit B [Brucella neotomae 5K33]
 gi|256158821|ref|ZP_05456682.1| DNA gyrase subunit B [Brucella ceti M490/95/1]
 gi|256254206|ref|ZP_05459742.1| DNA gyrase subunit B [Brucella ceti B1/94]
 gi|256258686|ref|ZP_05464222.1| DNA gyrase subunit B [Brucella abortus bv. 9 str. C68]
 gi|260169704|ref|ZP_05756515.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|260546403|ref|ZP_05822143.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260759206|ref|ZP_05871554.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|260760928|ref|ZP_05873271.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260885003|ref|ZP_05896617.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261215258|ref|ZP_05929539.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261221355|ref|ZP_05935636.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261314658|ref|ZP_05953855.1| conserved hypothetical protein [Brucella pinnipedialis
          M163/99/10]
 gi|261316784|ref|ZP_05955981.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94]
 gi|261324241|ref|ZP_05963438.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261751453|ref|ZP_05995162.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|261759241|ref|ZP_06002950.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|265987855|ref|ZP_06100412.1| hypothetical protein BALG_00432 [Brucella pinnipedialis
          M292/94/1]
 gi|265997315|ref|ZP_06109872.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294851528|ref|ZP_06792201.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026]
 gi|297247522|ref|ZP_06931240.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196]
 gi|189018952|gb|ACD71674.1| DNA gyrase subunit B [Brucella abortus S19]
 gi|225618323|gb|EEH15366.1| DNA gyrase, B subunit [Brucella ceti str. Cudo]
 gi|237789434|gb|EEP63644.1| DNA gyrase, B subunit [Brucella abortus str. 2308 A]
 gi|260096510|gb|EEW80386.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669524|gb|EEX56464.1| DNA gyrase subunit B [Brucella abortus bv. 4 str. 292]
 gi|260671360|gb|EEX58181.1| DNA gyrase subunit B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260874531|gb|EEX81600.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916865|gb|EEX83726.1| DNA gyrase subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260919939|gb|EEX86592.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261296007|gb|EEX99503.1| hypothetical protein BAHG_00433 [Brucella pinnipedialis B2/94]
 gi|261300221|gb|EEY03718.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261303684|gb|EEY07181.1| conserved hypothetical protein [Brucella pinnipedialis
          M163/99/10]
 gi|261739225|gb|EEY27221.1| DNA gyrase subunit B [Brucella sp. F5/99]
 gi|261741206|gb|EEY29132.1| DNA gyrase subunit B [Brucella suis bv. 5 str. 513]
 gi|262551783|gb|EEZ07773.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264660052|gb|EEZ30313.1| hypothetical protein BALG_00432 [Brucella pinnipedialis
          M292/94/1]
 gi|294820117|gb|EFG37116.1| hypothetical protein BAZG_00434 [Brucella sp. NVSL 07-0026]
 gi|297174691|gb|EFH34038.1| DNA gyrase, B subunit [Brucella abortus bv. 5 str. B3196]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|163842400|ref|YP_001626804.1| DNA gyrase subunit B [Brucella suis ATCC 23445]
 gi|254705305|ref|ZP_05167133.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
 gi|261756016|ref|ZP_05999725.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
 gi|163673123|gb|ABY37234.1| DNA gyrase, B subunit [Brucella suis ATCC 23445]
 gi|261745769|gb|EEY33695.1| DNA gyrase subunit B [Brucella suis bv. 3 str. 686]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|161618113|ref|YP_001592000.1| DNA gyrase subunit B [Brucella canis ATCC 23365]
 gi|260567232|ref|ZP_05837702.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161334924|gb|ABX61229.1| DNA gyrase, B subunit [Brucella canis ATCC 23365]
 gi|260156750|gb|EEW91830.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|148560385|ref|YP_001258162.1| DNA gyrase subunit B [Brucella ovis ATCC 25840]
 gi|148371642|gb|ABQ61621.1| DNA gyrase, B subunit [Brucella ovis ATCC 25840]
          Length = 810

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 47 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 88


>gi|150402157|ref|YP_001329451.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis C7]
 gi|150033187|gb|ABR65300.1| DNA topoisomerase VI, B subunit [Methanococcus maripaludis C7]
          Length = 664

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR-HC 76
             + EL+ NSLDA  ES     +   I   G       I DNG G+  E +P    +   
Sbjct: 44  TIVHELVTNSLDACEESEILPEIAVEIKKIGSETFGVNIEDNGPGIPPEFVPKVFGKMLA 103

Query: 77  TSKIS 81
            SK+ 
Sbjct: 104 GSKLH 108


>gi|189423665|ref|YP_001950842.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189419924|gb|ACD94322.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 473

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 25  IAIKELIENSLDA----ES--SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             +  ++ N++DA     S   R+   I+    ++   I DNG G+  E +P   + + T
Sbjct: 366 QVVLNILNNAIDALNHSGSRDKRILVSISAEHNRAVLAIQDNGGGIPPEALPHIFEPYFT 425

Query: 78  SK 79
           +K
Sbjct: 426 TK 427


>gi|111020664|ref|YP_703636.1| hypothetical protein RHA1_ro03675 [Rhodococcus jostii RHA1]
 gi|110820194|gb|ABG95478.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 941

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 16  AGEIIERPSIAIKELIENSLDAES--SRVETVIA---GGGKSFFQITDNGFGMTSEEIPM 70
           +G ++      + EL++NSL A    + V    A    GG    +I D G G+ ++++  
Sbjct: 513 SGTVVTDVVHLLAELVDNSLRASPPDTVVTFSFARAVDGGV-LLEIADRGIGIPADDMRA 571

Query: 71  AVQRHC 76
             +R  
Sbjct: 572 VNERLA 577


>gi|17988106|ref|NP_540740.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|225851665|ref|YP_002731898.1| DNA gyrase subunit B [Brucella melitensis ATCC 23457]
 gi|256045916|ref|ZP_05448790.1| DNA gyrase subunit B [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112631|ref|ZP_05453552.1| DNA gyrase subunit B [Brucella melitensis bv. 3 str. Ether]
 gi|256264825|ref|ZP_05467357.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|260563202|ref|ZP_05833688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          16M]
 gi|265992329|ref|ZP_06104886.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|265994072|ref|ZP_06106629.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|17983859|gb|AAL53004.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M]
 gi|225640030|gb|ACN99943.1| DNA gyrase, B subunit [Brucella melitensis ATCC 23457]
 gi|260153218|gb|EEW88310.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          16M]
 gi|262765053|gb|EEZ10974.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|263003395|gb|EEZ15688.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|263095280|gb|EEZ18907.1| DNA gyrase subunit B [Brucella melitensis bv. 2 str. 63/9]
 gi|326408144|gb|ADZ65209.1| DNA gyrase subunit B [Brucella melitensis M28]
 gi|326537855|gb|ADZ86070.1| DNA gyrase, B subunit [Brucella melitensis M5-90]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 91


>gi|23501039|ref|NP_697166.1| DNA gyrase subunit B [Brucella suis 1330]
 gi|23346904|gb|AAN29081.1| DNA gyrase, B subunit [Brucella suis 1330]
          Length = 810

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 47 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 88


>gi|62289106|ref|YP_220899.1| DNA gyrase subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|82699044|ref|YP_413618.1| DNA gyrase subunit B [Brucella melitensis biovar Abortus 2308]
 gi|256368589|ref|YP_003106095.1| DNA gyrase subunit B [Brucella microti CCM 4915]
 gi|62195238|gb|AAX73538.1| GyrB, DNA gyrase, B subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82615145|emb|CAJ10078.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA
          topoisomerase II:DNA gyrase, subunit B,
          C-terminal:ATP-binding region [Brucella melitensis
          biovar Abortus 2308]
 gi|255998747|gb|ACU47146.1| DNA gyrase subunit B [Brucella microti CCM 4915]
          Length = 810

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 47 VYEVVDNAIDEALAGHATLVTVTLNADG--SCTVTDNGRGIPTD 88


>gi|56475776|ref|YP_157365.1| DNA topoisomerase IV subunit B [Aromatoleum aromaticum EbN1]
 gi|56311819|emb|CAI06464.1| Topoisomerase IV subunit B (EC 5.99.1.-) [Aromatoleum aromaticum
          EbN1]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+  I+E+I+N+ D A    + ++   +   G     + D+G G+      +E    +
Sbjct: 32 DSPAHIIQEVIDNAADEALGGFAKKIHVTLHLDG--SISVADDGRGIPVGLHPDERVPVV 89

Query: 69 PMAVQR-HC 76
           +A  R H 
Sbjct: 90 VLAFTRLHA 98


>gi|328470022|gb|EGF40933.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           parahaemolyticus 10329]
          Length = 690

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 21  ERPSIAIKELIENSLDA-ESS---RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  LI N+LDA +S    ++  V+          ++DNG G+  E++    +  
Sbjct: 580 QRLQQVLGNLISNALDAIQSRDNPQLSIVVTPTNSHVEVVVSDNGCGVALEQLDTIFEPF 639

Query: 76  CTS-KISDDF 84
            TS KI +  
Sbjct: 640 QTSKKIGEGL 649


>gi|300855979|ref|YP_003780963.1| putative membrane-bound ATPase [Clostridium ljungdahlii DSM 13528]
 gi|300436094|gb|ADK15861.1| putative membrane-bound ATPase [Clostridium ljungdahlii DSM 13528]
          Length = 428

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 21/100 (21%)

Query: 23  PSIAIKELIENSLDAESSR----VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
               I+ LI NS+++   R    +  VI    G+  F ++DNG G+  +++        +
Sbjct: 306 LVSIIRNLIYNSIESMEKRKNGYIRIVISKRQGECIFVVSDNGSGIKKKDLAYVFNPGFS 365

Query: 78  SKISDD------------FSNIHTFGFRGEALPSIGAVSH 105
           +K + +             + I T  F+G    SI  VS 
Sbjct: 366 TKFNKETGDICRGIGLTHVNGIVTDIFKG----SISVVSE 401


>gi|260463215|ref|ZP_05811417.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031065|gb|EEW32339.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 594

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 15/67 (22%)

Query: 17  GEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPM 70
           G++I         LIEN+      D     +   +A  GK     I DNG G+ ++ I  
Sbjct: 481 GQVITN-------LIENARSFVPEDHG--HISLSLARAGKFNILTIDDNGPGIRADNIDR 531

Query: 71  AVQRHCT 77
             +R  T
Sbjct: 532 IFERFYT 538


>gi|210622830|ref|ZP_03293374.1| hypothetical protein CLOHIR_01322 [Clostridium hiranonis DSM 13275]
 gi|210154047|gb|EEA85053.1| hypothetical protein CLOHIR_01322 [Clostridium hiranonis DSM 13275]
          Length = 351

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD---AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           IE     IK    NS D   +  + +              I DNG G+  +++    +R 
Sbjct: 245 IEALENIIK----NSFDHTKSG-NSINVEWRKLPTIIQIVIKDNGSGIHPQDLHHIFKRF 299

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 300 YRSRFSKDTQGIG 312


>gi|209964673|ref|YP_002297588.1| DNA topoisomerase IV subunit B [Rhodospirillum centenum SW]
 gi|209958139|gb|ACI98775.1| DNA topoisomerase IV, B subunit, putative [Rhodospirillum
          centenum SW]
          Length = 663

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+++N++D   A  ++R++  +   G     + DNG G+  +E P
Sbjct: 51 EVLDNAMDEAVAGHATRIDMELTADGT--VTVRDNGRGIPVDEHP 93


>gi|182412645|ref|YP_001817711.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
           PB90-1]
 gi|177839859|gb|ACB74111.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
           PB90-1]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 30  LIENSLDA------ESSRVETVIAGGGKSFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+ DA         ++   +A          + DNG G+  E +    Q   T+K
Sbjct: 548 LLKNAKDALQVIKPGERQIRVKVAAVRDDRIALSVEDNGPGIAPENLTKIFQHGFTTK 605


>gi|118593553|ref|ZP_01550932.1| Signal transduction histidine kinase-like protein [Stappia
           aggregata IAM 12614]
 gi|118433892|gb|EAV40551.1| Signal transduction histidine kinase-like protein [Stappia
           aggregata IAM 12614]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 36  DAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTSKISD 82
           D +S ++       G    +  + DNG G+  +      +R  T+K++ 
Sbjct: 518 DDQSGQITITGKAAGSDEIELVVADNGHGIPEDLRQQVFERFFTTKLAS 566


>gi|117619604|ref|YP_854532.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
 gi|117561011|gb|ABK37959.1| DNA gyrase, B subunit [Aeromonas hydrophila subsp. hydrophila
          ATCC 7966]
          Length = 803

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S ++  I   G     + DNG G+  +
Sbjct: 43 EVVDNSIDEALAGYCSDIQVKIHSDG--SVSVRDNGRGIPVD 82


>gi|86157632|ref|YP_464417.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774143|gb|ABC80980.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 609

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 22  RPSIAIKELIENSLDAESSR-VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH--CT 77
           R   A+  L+ N+L   + R VE  +   G      + D+G G+   +      R    T
Sbjct: 481 RLEQALGHLLSNALRHGAGRPVEIRVEGEGALGRIVVVDHGAGVDPADAERIFGRFERAT 540

Query: 78  S 78
           S
Sbjct: 541 S 541


>gi|326629557|gb|EGE35900.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 552

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 444 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 501

Query: 75  HCTSK 79
           + T+K
Sbjct: 502 YFTTK 506


>gi|308050989|ref|YP_003914555.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799]
 gi|307633179|gb|ADN77481.1| DNA topoisomerase IV subunit B [Ferrimonas balearica DSM 9799]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +S ++ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHASEIQVILHPD--HSLEVIDDGRGMPVDIHPEEGVPGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDAQVYEIAFEHGAK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + ++        N GT V              +  SE+  ++ +  ++R  A+  P + 
Sbjct: 147 VQDLTVTGTCGRRNTGTRVHFW-------PDPKYFDSEKFSSSRLIHLLRAKAVLCPGLK 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
             F      + + +         + +  
Sbjct: 200 IRF--DDKIKGERHEWYFEDGLRDYLVD 225


>gi|322436978|ref|YP_004219190.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164705|gb|ADW70410.1| DNA gyrase, B subunit [Acidobacterium sp. MP5ACTX9]
          Length = 898

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE 67
           + E+++NS+D   A  +SR++  I     +   + D+G G+  + 
Sbjct: 66  VYEVVDNSVDEALAGYASRIDVTIHVD--NSITVVDDGRGIPVDN 108


>gi|262198905|ref|YP_003270114.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262082252|gb|ACY18221.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 510

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 22/98 (22%)

Query: 22  RPSIAIKELIENSLDA---ES---SRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           R       LI N++ A    +    ++     +   G+   +++D G G+ +E +P    
Sbjct: 263 RLGQVFLNLILNAVQAIPVGAAQNHQIRLVTRVTRSGQILVEVSDTGAGIPAEVLPRLFD 322

Query: 74  R-HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMS 110
               TSK+  D       G R      I +VSH  + S
Sbjct: 323 PFFATSKLGQDV------GLR------I-SVSHSIVTS 347


>gi|126208669|ref|YP_001053894.1| hypothetical protein APL_1201 [Actinobacillus pleuropneumoniae
          L20]
 gi|126097461|gb|ABN74289.1| hypothetical protein APL_1201 [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
          Length = 553

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA +   E ++    +    I D+G GMT +EI     R
Sbjct: 29 AIAELIANAYDAGAKVAEVLLYDKHEHKIIIRDDGIGMTFDEINEFYLR 77


>gi|68171653|ref|ZP_00545017.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657694|ref|YP_507430.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas]
 gi|67998927|gb|EAM85614.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599151|gb|ABD44620.1| DNA gyrase, B subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 798

 Score = 43.9 bits (102), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A   ++++ VI   G     + DNG G+  +
Sbjct: 39 VYEVIDNSIDEALAGFCNKIDIVIQSDG--SVSVVDNGRGIPVD 80


>gi|309809211|ref|ZP_07703081.1| conserved hypothetical protein [Lactobacillus iners SPIN
          2503V10-D]
 gi|308170445|gb|EFO72468.1| conserved hypothetical protein [Lactobacillus iners SPIN
          2503V10-D]
          Length = 337

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          ELI+N+ +A +S +E  I        +I D+G GM   +I 
Sbjct: 26 ELIKNAYEAMASYIEINIYD---EMIEIIDDGEGMDLSDIR 63


>gi|206889996|ref|YP_002247871.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM
          11347]
 gi|206741934|gb|ACI20991.1| DNA gyrase, B subunit [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 759

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          +E     + E+++NS+D   A   +++E  +   G     + DNG G+ +E
Sbjct: 47 VEGLHHLVYEVVDNSVDEALAGFCNKIEVRLHTDG--SCSVIDNGRGIPTE 95


>gi|254447538|ref|ZP_05061004.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015]
 gi|198262881|gb|EDY87160.1| DNA gyrase, B subunit [gamma proteobacterium HTCC5015]
          Length = 802

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +  VI         ++DNG G+ ++
Sbjct: 42 EVVDNSIDEALAGHCSEIRVVIHND--ESVSVSDNGRGIPTD 81


>gi|163757528|ref|ZP_02164617.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43]
 gi|162285030|gb|EDQ35312.1| DNA gyrase subunit B [Hoeflea phototrophica DFL-43]
          Length = 811

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  + RV   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADRVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|114704745|ref|ZP_01437653.1| two-component sensor histidine kinase ExoS [Fulvimarina pelagi
           HTCC2506]
 gi|114539530|gb|EAU42650.1| two-component sensor histidine kinase ExoS [Fulvimarina pelagi
           HTCC2506]
          Length = 598

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 18  EII---ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIP 69
           E++    R       LIEN+     D    R+E  +          + DNG G+ +E+I 
Sbjct: 478 EVVGHDLRLGQVFTNLIENARSFVPDEG-GRIEINVRRRSNRLVVTVEDNGPGIQAEDID 536

Query: 70  MAVQRHCT 77
              +R  T
Sbjct: 537 RIFERFYT 544


>gi|46580157|ref|YP_010965.1| hypothetical protein DVU1747 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449574|gb|AAS96224.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233852|gb|ADP86706.1| histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 981

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 90/579 (15%), Positives = 170/579 (29%), Gaps = 72/579 (12%)

Query: 17  GEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           G+I + P  AI EL +N+ DA +  VE  I  G      I DNG GM +E +        
Sbjct: 20  GQIADAP-TAISELWKNAYDAYARGVELHIHSGNVVVASICDNGHGMDAETLSSKWLVVG 78

Query: 77  T-SKIS-----DDFSNI---HTFGFRGEALPSIGAVSHLTL-MSRPPQNNTGAQIAISGE 126
           T SK++     +D   +      G +G    S   +S +TL +S+       A +     
Sbjct: 79  TESKVASPVPVEDRFGLPERARLGEKGIGRLSAAFLSPVTLVVSKRVGQPYAALLVDWRF 138

Query: 127 KISSVRPVAMNPGTIV---EVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
             +    +      +V   E+++           LK+     +         A      +
Sbjct: 139 FENPYLFINDVRFPLVEFGELKEFPALFAQMFEELKANLQWGSASPHTAHLAAAWDRFDA 198

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNE---ITLQGYTGIP 240
                  +               E I  +  E  I               +      G  
Sbjct: 199 IEREQNPNAPTT----------REAILSLSPEGLIKWDHFSPWWQLMHKAVEGDDVHGTA 248

Query: 241 TFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETI----PLGRYPVVVLLLEIDPRQVD 296
            F  G   +   ++     +   I     T     +    P    P+      +  +   
Sbjct: 249 LFTIGANTELACWVTDDEYESPDIQKVKETLTETLVSFVDPFEDTPIAFDYAVVVHKPGK 308

Query: 297 VNVHPAKSYIRF--RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTH 354
            +  P  S   F  +    + + I      A N +G  T+    K     F         
Sbjct: 309 ADFIPVSSEEVFDIQELRSLEHVIEGEFDTAGNFQGRITA--FGKDRGECFLP------- 359

Query: 355 LPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH 414
               + S+   + K  +   R            T   D +    S   +   GI   +  
Sbjct: 360 ----SPSVFTQRGKDSVGPFRFCLGTFEQDKKNTTHSDEEFEYHSSQVNKYGGICIHRDG 415

Query: 415 QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIM 474
              +     DG +   +    +    E      +  ++   +   P + D    E  ++ 
Sbjct: 416 LRVMPYGREDGDLFRMEFRRSKHAGREFFVYRRSFGRLAITSQHNPNLKDKAGREGLVVN 475

Query: 475 EHDEDLHRLGIKA------ERFGP-NAIAIREIPAI-------------LSKKNIPQLLR 514
           +   +  RL I        E FG  + I  +E+P I               K+N    +R
Sbjct: 476 KARREFERLVINLLMYVAREYFGTASTIRNQELPGIQKARQRQMRAAETARKRNQKNFVR 535

Query: 515 DIIDEI-IDSSTTYTLQDRIENILATMACYG-----SIR 547
            + +++ +    +   +   + +  T+AC       +I+
Sbjct: 536 ALKEKLPLALEASTRAEAGADKLEQTLACKAYDDLPAIK 574


>gi|293607634|ref|ZP_06689968.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814067|gb|EFF73214.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 449

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 12  NQIAAGEII--ERPS--IAIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTS 65
           NQIA G ++  +R +    ++ L+ N+++  A ++ +            ++ D+G G++ 
Sbjct: 313 NQIAPGHVLMLDRYALLTVLRNLVRNAVEHAAPAT-LTASFRAP--DLLELRDDGRGISP 369

Query: 66  EEIPMAVQRHC 76
           +++P   +R+ 
Sbjct: 370 DDLPFLFRRYY 380


>gi|322417549|ref|YP_004196772.1| DNA gyrase subunit B [Geobacter sp. M18]
 gi|320123936|gb|ADW11496.1| DNA gyrase, B subunit [Geobacter sp. M18]
          Length = 796

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + EL++N++D   A     V+  I   G     + DNG G+ ++
Sbjct: 43 VYELVDNAIDEALAGYCDAVQVTIHLDGT--VTVEDNGRGIPTD 84


>gi|257057241|ref|YP_003135073.1| signal transduction histidine kinase [Saccharomonospora viridis DSM
           43017]
 gi|256587113|gb|ACU98246.1| signal transduction histidine kinase [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQ 73
                A+  L++N++     D   S V  V+   G G +  +++D+G G+  E++PM   
Sbjct: 333 HSLERAVLNLLDNAVKFSPQD---SVVRVVLRPLGDGTAVIEVSDSGPGIAPEDLPMVFD 389

Query: 74  RHCTS 78
           R   S
Sbjct: 390 RFYRS 394


>gi|161617312|ref|YP_001591277.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161366676|gb|ABX70444.1| hypothetical protein SPAB_05163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 527

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 419 DRLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 476

Query: 75  HCTSK 79
           + T+K
Sbjct: 477 YFTTK 481


>gi|85373836|ref|YP_457898.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
 gi|84786919|gb|ABC63101.1| two-component signal transduction histidine kinase [Erythrobacter
           litoralis HTCC2594]
          Length = 780

 Score = 43.9 bits (102), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 23  PSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQ--RHC 76
            + A+  L++N++   D    ++   +      +   ++DNG GM+SEE+  A++  R  
Sbjct: 677 LARAVGHLLDNAIVATDRG-GKILVDLAKKPEGTRIVLSDNGAGMSSEELRRALEGLR-- 733

Query: 77  TSKISDDFSNIH 88
              IS+D   I 
Sbjct: 734 ---ISEDGEGIE 742


>gi|310817547|ref|YP_003949905.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390619|gb|ADO68078.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 446

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 22  RPSIAIKELIENSLDAESSR-VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N+L   + R V   + G G ++   + D G G+  E++    +R 
Sbjct: 337 RVEQVVTNLLTNALKYGAGRPVAVRVEGAGERARLTVKDQGIGIAEEDLARIFERF 392


>gi|295090282|emb|CBK76389.1| DNA gyrase subunit B [Clostridium cf. saccharolyticum K10]
 gi|295115477|emb|CBL36324.1| DNA gyrase subunit B [butyrate-producing bacterium SM4/1]
          Length = 636

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S ++  I     +   +TDNG G+  +
Sbjct: 39 VYEIVDNSVDEALAGFCSEIDVQINAD--NSITVTDNGRGIPVD 80


>gi|290954873|ref|YP_003486055.1| two-component sensor kinase [Streptomyces scabiei 87.22]
 gi|260644399|emb|CBG67484.1| putative two-component sensor kinase [Streptomyces scabiei 87.22]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N++   +SR+   +   G     + D+G G+ +       QR  
Sbjct: 316 LVANAVRHAASRITIKVTADGLD---VIDDGPGIPAASRERVFQRFH 359


>gi|283797181|ref|ZP_06346334.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
 gi|291075139|gb|EFE12503.1| DNA gyrase, B subunit [Clostridium sp. M62/1]
          Length = 636

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S ++  I     +   +TDNG G+  +
Sbjct: 39 VYEIVDNSVDEALAGFCSEIDVQINAD--NSITVTDNGRGIPVD 80


>gi|194339079|gb|ACF49455.1| GyrB [Amycolatopsis keratiniphila subsp. keratiniphila]
          Length = 460

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 19/75 (25%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMAVQ 73
          E+++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + V 
Sbjct: 2  EVVDNSVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVDIHPKEQKPTLEVVLTVL 58

Query: 74 RHCTSKISDDFSNIH 88
           H   K   D   + 
Sbjct: 59 -HAGGKFDSDSYAVS 72


>gi|134045847|ref|YP_001097333.1| DNA topoisomerase VI subunit B [Methanococcus maripaludis C5]
 gi|132663472|gb|ABO35118.1| DNA topoisomerase VI, B subunit [Methanococcus maripaludis C5]
          Length = 664

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR-HC 76
             + EL+ NSLDA  ES     +   I   G       I DNG G+  E +P    +   
Sbjct: 44  TIVHELVTNSLDACEESEILPEIVVEIRKIGSETFGVNIEDNGPGIPPEYVPKVFGKMLA 103

Query: 77  TSKIS 81
            SK+ 
Sbjct: 104 GSKLH 108


>gi|40063412|gb|AAR38223.1| heat shock protein HtpG [uncultured marine bacterium 580]
          Length = 606

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 44/140 (31%)

Query: 20  IERPSI----AIKELIENSLDAESSR-------------------VETVIAGGGKSFFQI 56
           I         A++ELI N+ DA + +                   +        K    I
Sbjct: 2   IHSLYSNKEIAVRELISNASDA-ADKLRFEALEKNDLYEKDSELKIWVDFDKD-KKTITI 59

Query: 57  TDNGFGMTSEEIPMAVQRHCTS-------KISDD------FSNIHTFGFRGEALPSIGAV 103
           +DNG GM+ ++I   +     S       K+S D             GF      S   +
Sbjct: 60  SDNGIGMSRDDIVKNIGTIAKSGTKEFLKKLSGDQAKDANLIGQFGVGF-----YSAFII 114

Query: 104 SH-LTLMSRPPQNNTGAQIA 122
           S  +TL SR     TG++  
Sbjct: 115 SDEVTLESRKAGAKTGSRWV 134


>gi|33862190|ref|NP_893751.1| DNA gyrase subunit B [Prochlorococcus marinus subsp. pastoris
          str. CCMP1986]
 gi|33634408|emb|CAE20093.1| DNA gyrase, subunit B [Prochlorococcus marinus subsp. pastoris
          str. CCMP1986]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E V+   G +    +DNG G+ ++
Sbjct: 48 VYEVVDNSVDEALAGHCDHIEIVLKEDGSALI--SDNGRGIPTD 89


>gi|67922741|ref|ZP_00516244.1| Heat shock protein Hsp90:ATP-binding region, ATPase-like
           [Crocosphaera watsonii WH 8501]
 gi|67855451|gb|EAM50707.1| Heat shock protein Hsp90:ATP-binding region, ATPase-like
           [Crocosphaera watsonii WH 8501]
          Length = 664

 Score = 43.9 bits (102), Expect = 0.072,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 77/288 (26%), Gaps = 51/288 (17%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N++DA S                   +   +    K+   I DNG GMT +EI 
Sbjct: 32  LRELISNAVDAISKLKMASLAGELSGDVPEPEITITVDTTNKTLC-IYDNGIGMTVDEIK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVSH-LTL--MSRPPQNN 116
             + +   S          K ++D       GF      S   V+  + +  +S    + 
Sbjct: 91  KYINQVAFSSAEEFVKKYQKTANDLIGHFGLGF-----YSAFMVAKQVEIDTLSYKEGSE 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                     +           GT V +  +           + E +E   I  +++  +
Sbjct: 146 AIHWSCDGSPEFELTESSRTQIGTTVTLTLM---------DDEQEYIEPQRIRQLVKTYS 196

Query: 177 IAYP-KVSFTFSTIKSNRYKMN---FQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
              P  + F   +I   +          T+ ++ E    +                    
Sbjct: 197 DFVPVPIKFENESINKQKALWKDSAQNLTDEDYLEFYRYLYPFQEDPLLWVHLNTDYPYL 256

Query: 233 LQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR 280
           L G    P                      F+         + +   R
Sbjct: 257 LNGILYFPKLRPDVDVSQGHI--KLFCNQVFVNDHCEEIIPDFLMPLR 302


>gi|294155351|ref|YP_003559735.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145]
 gi|291600024|gb|ADE19520.1| DNA topoisomerase IV, B subunit [Mycoplasma crocodyli MP145]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+++NS+D   A  ++++   +   G     I DNG G+           + +   + H 
Sbjct: 44  EIVDNSIDESLAGYANKIILTLKEDG--SVIIEDNGRGIPVGKVDATRSAVELVFTELHA 101

Query: 77  TSKISD 82
             K ++
Sbjct: 102 GGKFNE 107


>gi|261251317|ref|ZP_05943891.1| putative ammonium transporter [Vibrio orientalis CIP 102891]
 gi|260938190|gb|EEX94178.1| putative ammonium transporter [Vibrio orientalis CIP 102891]
          Length = 761

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 26  AIKELIENSLDA-------ESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
            ++ELI NS  A        + +   ++       GK    + DNG G++ E      Q 
Sbjct: 650 VLEELISNS--AVHGFVGKNAQQERIIMLNASEENGKLSIVVEDNGVGISPENQKKIFQP 707

Query: 75  HCT 77
             T
Sbjct: 708 FFT 710


>gi|242095862|ref|XP_002438421.1| hypothetical protein SORBIDRAFT_10g017840 [Sorghum bicolor]
 gi|241916644|gb|EER89788.1| hypothetical protein SORBIDRAFT_10g017840 [Sorghum bicolor]
          Length = 118

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 24  SIAIKELIENSLD---AESSRVETV---IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             AI EL++N++D   + ++ V+      +  G     I DNG GM+ + +     RHC 
Sbjct: 45  YTAIAELLDNAIDEVSSGATFVKIDKMKHSPDGDYSLVIEDNGGGMSPKSL-----RHCM 99

Query: 78  S 78
           S
Sbjct: 100 S 100


>gi|94957780|gb|ABF47140.1| DNA gyrase subunit B [Entomoplasma melaleucae]
          Length = 553

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 14 EIMDNSVDEAMAGFANKIILTITQEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|170720282|ref|YP_001747970.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida W619]
 gi|169758285|gb|ACA71601.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida W619]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA +S+    +       G K   ++ DNG G+  E      +  
Sbjct: 518 TRLEQILVNLIGNALDAMASQPAPELWLEGELQGDKYRLRVRDNGHGIDDEARKHLFEPF 577

Query: 76  CTSK 79
            T+K
Sbjct: 578 FTTK 581


>gi|88704290|ref|ZP_01102004.1| Sensor protein zraS [Congregibacter litoralis KT71]
 gi|88701341|gb|EAQ98446.1| Sensor protein zraS [Congregibacter litoralis KT71]
          Length = 406

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 30  LIENSLD-AESSRVETVIAGGGKS----FFQITDNGFGMTSEEIPMAVQRHCT 77
           L++N++D A    V   +  G  S       + DNG G+  E +P       T
Sbjct: 289 LVQNAVDVAG-DDVRIELWAGATSHNSLQICVRDNGPGIAPEVLPRLFDPFFT 340


>gi|152978653|ref|YP_001344282.1| DNA topoisomerase IV subunit B [Actinobacillus succinogenes 130Z]
 gi|150840376|gb|ABR74347.1| DNA topoisomerase IV, B subunit [Actinobacillus succinogenes
          130Z]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   A  +S++E V+        ++TDNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALAGFASKIEVVLHSD--QSLEVTDNGRGMPVD-------IHP 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKS---FFQITD 58
           L  ++ + + A    E+    I+ L+ N++  + +    RVE  +  G +      ++ D
Sbjct: 426 LDPEV-SLLRADP--EKLRRVIENLVGNAI--KFTPAEGRVEIEVKNGPRDNWLMIRVID 480

Query: 59  NGFGMTSEEIPMAVQRHC 76
            G G+  EE     +R  
Sbjct: 481 TGIGIPPEEQEEIFERFT 498


>gi|270295220|ref|ZP_06201421.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274467|gb|EFA20328.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 79/256 (30%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 33  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVTIE 91

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 92  DS--LRVSVRDYGRGIPQGKLVEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 147

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S         ++ I+  +  ++        T      +FF   A L    S
Sbjct: 148 ----RFEVRSYRDG-----KVRIAIFEKGTLLSDVTEDSTEESGTYIFFEPDATLFLNYS 198

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            Q +   +  ++R        ++F         +     +   +        I  + GED
Sbjct: 199 FQNQF--VETLLRNYTYLNTGLTFIYNGQRIVSRHGLEDLLKDNMTSEGLYDIIHLKGED 256

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 257 IEIAFTHTNQYGEEYY 272


>gi|229489497|ref|ZP_04383360.1| signal transduction histidine-protein kinase afsQ2 [Rhodococcus
           erythropolis SK121]
 gi|229323594|gb|EEN89352.1| signal transduction histidine-protein kinase afsQ2 [Rhodococcus
           erythropolis SK121]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 26  AIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  L+ N+L   +  V   ++   G S   + D+G G++ E+     +R  
Sbjct: 365 VVANLVGNALRHGAPPVRVELSVESGFSVITVVDHGPGISPEDRQAIFRRFY 416


>gi|227891673|ref|ZP_04009478.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
 gi|227866476|gb|EEJ73897.1| DNA gyrase subunit B [Lactobacillus salivarius ATCC 11741]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  +  +   +     +   + DNG G+  +
Sbjct: 54 EIIDNGIDEALAGFADEINVTVEED--NSITVKDNGRGIPVD 93


>gi|259907122|ref|YP_002647478.1| DNA topoisomerase IV subunit B [Erwinia pyrifoliae Ep1/96]
 gi|224962744|emb|CAX54199.1| DNA topoisomerase 4 subunit (topoisomerase IV subunit B) [Erwinia
           pyrifoliae Ep1/96]
 gi|283476925|emb|CAY72799.1| DNA topoisomerase IV, B subunit [Erwinia pyrifoliae DSM 12163]
 gi|310766325|gb|ADP11275.1| DNA topoisomerase IV subunit B [Erwinia sp. Ejp617]
          Length = 631

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 29/210 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHAKRVEVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           +   R H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 90  LIFCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRNGEVYEMAFENGDKV 148

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS- 183
           + ++    V   N GT V+            +F  S +     ++ +++  A+  P V  
Sbjct: 149 QDLTVTGTVGKRNTGTRVQFW-------PDESFFDSPRFSVTRLSHLLKAKAVLCPGVEI 201

Query: 184 -FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
            F     K+ +             E ++ +
Sbjct: 202 VFKDRLNKTEQSWCYADGLTDYLMEAVNGL 231


>gi|237806990|ref|YP_002891430.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Tolumonas auensis DSM 9187]
 gi|237499251|gb|ACQ91844.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Tolumonas auensis DSM 9187]
          Length = 536

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA--ESSRVETVIA---GGGKSFFQITDNG 60
           L E      A  E+       +  L+EN++DA   S     V+      G     ++DNG
Sbjct: 416 LPES-----AESEVTHELVTVLGNLLENAMDALEGSDSAAIVLTFDHDDGHLRCTVSDNG 470

Query: 61  FGMTSEEIPMAVQRHCTSK 79
            G+         +   ++K
Sbjct: 471 QGIEPAVAAHIFEHGFSTK 489


>gi|332139414|ref|YP_004425152.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549436|gb|AEA96154.1| DNA gyrase subunit B [Alteromonas macleodii str. 'Deep ecotype']
          Length = 806

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 72/252 (28%), Gaps = 35/252 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I   G     ++D+G G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCSEIVVQIHSDG--SVSVSDDGRGIPTELHPEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L  R  +     +         
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----RLKL--RIRRGGKAHEQEYQHGVPQ 153

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +   V  +      +   +       +         +++   +R ++     VS      
Sbjct: 154 APLAVTGDTDKTGTMIRFW----PSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDE 209

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           +  +         G     +  +  +    +    +  S +           +N      
Sbjct: 210 RDGKED--HFMYEGGIKAFVEYLNQKKTAVHQKVFHFSSEQEDGIAVEVAMQWNDSFQEN 267

Query: 250 FYVFINGRTVQD 261
            + F N    +D
Sbjct: 268 VFCFTNNIPQRD 279


>gi|90960995|ref|YP_534911.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
 gi|301300484|ref|ZP_07206683.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820189|gb|ABD98828.1| DNA gyrase subunit B [Lactobacillus salivarius UCC118]
 gi|300213943|gb|ADJ78359.1| DNA gyrase subunit B [Lactobacillus salivarius CECT 5713]
 gi|300851931|gb|EFK79616.1| DNA gyrase, B subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 652

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  +  +   +     +   + DNG G+  +
Sbjct: 54 EIIDNGIDEALAGFADEINVTVEED--NSITVKDNGRGIPVD 93


>gi|53729084|ref|ZP_00348315.1| COG0326: Molecular chaperone, HSP90 family [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307257254|ref|ZP_07539024.1| hypothetical protein appser10_12520 [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
 gi|306864104|gb|EFM96017.1| hypothetical protein appser10_12520 [Actinobacillus
          pleuropneumoniae serovar 10 str. D13039]
          Length = 557

 Score = 43.9 bits (102), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 26 AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          AI ELI N+ DA +   E ++    +    I D+G GMT +EI     R
Sbjct: 33 AIAELIANAYDAGAKVAEVLLYDKHEHKIIIRDDGIGMTFDEINEFYLR 81


>gi|332519801|ref|ZP_08396265.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044360|gb|EGI80554.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 568

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 29  ELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           EL +NS+DA   +      +   I    +S   I DNG G+  E +P+ +    T K  +
Sbjct: 35  ELCQNSVDAIRKKNPPKGLISLEIDSINRSII-IQDNGIGINPERLPILLAPFSTDK-EN 92

Query: 83  DFSNIHTFG 91
           D ++I   G
Sbjct: 93  DETSIGEKG 101


>gi|315122338|ref|YP_004062827.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495740|gb|ADR52339.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+N++D   A  +  +E  +   G  F  + DNG G+  +  P 
Sbjct: 79  EVIDNAMDEVIAGHADLIEVSLDNNG--FLTVVDNGRGIPVDNHPK 122


>gi|293412409|ref|ZP_06655132.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|291469180|gb|EFF11671.1| DNA topoisomerase IV [Escherichia coli B354]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVIGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|238926452|ref|ZP_04658212.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
 gi|238885646|gb|EEQ49284.1| conserved hypothetical protein [Selenomonas flueggei ATCC 43531]
          Length = 533

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 29/163 (17%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGG-------G---------KSFFQITDNGFGMTS 65
            P I  +E I+N+ DA    ++  +  G       G         + +  I DNG G+ +
Sbjct: 23  DPIIIYREYIQNACDA----IDQAVREGLYEEQRQGSVHLFVDCDRRYVAIEDNGAGVPA 78

Query: 66  EEI-PMAVQRHCTSKISDDFSNIHTFGFRGEA-LPSIGAVSHLTLMSRPPQNNTGAQIAI 123
            +          +SK +D        GFRG   L  +     L   +R    +  +++  
Sbjct: 79  AKFRRTVGDIANSSKEAD-----KDKGFRGIGRLAGLAYCKRLVFTTRAAGESVVSRLEC 133

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
              +  ++     +  T  EV D  F+  A     K       
Sbjct: 134 DAVRFCAMVNEKGH--TAAEVLDAAFSFSAEEAKKKDAAHFFR 174


>gi|255657221|ref|ZP_05402630.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 671

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
              G +  +I+DNG G+  E IP    R  T
Sbjct: 592 EEDGFAIIKISDNGKGIPPENIPKVFDRFFT 622


>gi|255308338|ref|ZP_05352509.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 671

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
              G +  +I+DNG G+  E IP    R  T
Sbjct: 592 KEDGFAIIKISDNGKGIPPENIPKVFDRFFT 622


>gi|255102434|ref|ZP_05331411.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
          Length = 671

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
              G +  +I+DNG G+  E IP    R  T
Sbjct: 592 KEDGFAIIKISDNGKGIPPENIPKVFDRFFT 622


>gi|126700885|ref|YP_001089782.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|115252322|emb|CAJ70163.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 675

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
              G +  +I+DNG G+  E IP    R  T
Sbjct: 596 KEDGFAIIKISDNGKGIPPENIPKVFDRFFT 626


>gi|73539709|ref|YP_294229.1| DNA gyrase subunit B [Ralstonia eutropha JMP134]
 gi|72117122|gb|AAZ59385.1| DNA gyrase subunit B [Ralstonia eutropha JMP134]
          Length = 841

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + +   I     +   I DNG G+  
Sbjct: 50 EVLDNSIDEALAGYCTEITVTIHSD--NSISIVDNGRGIPP 88


>gi|37524815|ref|NP_928159.1| two-component sensor histidine kinase UhpB, phosphorylates UhpA
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784240|emb|CAE13109.1| Two-component sensor histidine kinase UhpB, phosphorylates UhpA
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 514

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 8/65 (12%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIEN-SLDAESSRVETVIAGGGKSFF--QITDNGF 61
           +L +   N+     ++      ++EL+ N S  A+++R+  ++    +     +I+DNG 
Sbjct: 410 QLPQNPTNE----TVVFTLYRLVQELLNNISKHAKATRIAIILRQH-RDVIELRISDNGI 464

Query: 62  GMTSE 66
           G+T +
Sbjct: 465 GITED 469


>gi|296451937|ref|ZP_06893653.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296879669|ref|ZP_06903645.1| two component sensor histidine kinase [Clostridium difficile NAP07]
 gi|296259251|gb|EFH06130.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296429338|gb|EFH15209.1| two component sensor histidine kinase [Clostridium difficile NAP07]
          Length = 675

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
              G +  +I+DNG G+  E IP    R  T
Sbjct: 596 EEDGFAIIKISDNGKGIPPENIPKVFDRFFT 626


>gi|255526545|ref|ZP_05393454.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296187651|ref|ZP_06856045.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255509795|gb|EET86126.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296047608|gb|EFG87048.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 472

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP-- 98
           +V   +        ++ DNG G+  +++P   +R        D S     G  G  L   
Sbjct: 381 KVVVELKEEEGICIKVKDNGIGIPEKDLPYIFERFY----RTDLSRTKNTGGSGIGLTIT 436

Query: 99  -SI--GAVSHLTLMSRPPQNNT 117
            S+       +++ S+  + +T
Sbjct: 437 KSLVECHNGKISVESKEKEGST 458


>gi|239993753|ref|ZP_04714277.1| DNA gyrase subunit B [Alteromonas macleodii ATCC 27126]
          Length = 806

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 73/252 (28%), Gaps = 35/252 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +  +I   G     ++D+G G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCSEITVLIHSDG--SVSVSDDGRGIPTELHPEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L  R  +     +         
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----RLKL--RIRRGGKAHEQEYHHGVPQ 153

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +   V  +      +   +       +         +++   +R ++     VS      
Sbjct: 154 APLAVTGDTDKTGTMIRFW----PSSDTFTDTLYHYDILAKRLRELSFLNSGVSIRLKDE 209

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           +  +         G     +  +  +    +    +  S +           +N      
Sbjct: 210 RDGKED--HFMYEGGIKAFVEYLNEKKTPVHQKVFHFSSEQEDGIAVEVAMQWNDSFQEN 267

Query: 250 FYVFINGRTVQD 261
            + F N    +D
Sbjct: 268 VFCFTNNIPQRD 279


>gi|225629988|ref|YP_002726779.1| DNA gyrase, B subunit [Wolbachia sp. wRi]
 gi|225591969|gb|ACN94988.1| DNA gyrase, B subunit [Wolbachia sp. wRi]
          Length = 809

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 54 VYEVIDNAIDESLAGYCDKIEVSINKDG--SVSVTDNGRGIPTD 95


>gi|182413657|ref|YP_001818723.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
 gi|177840871|gb|ACB75123.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
          Length = 478

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  +  L+ N++   S      I        +   + DNG G++  ++P    R     
Sbjct: 366 LAQVVTNLVGNAIHHSSREARVRIELTATASSAVLVVADNGEGISPADLPHIFDRFY--- 422

Query: 80  ISDDFSNIHTFGFRGEALP 98
              D S   T G  G  L 
Sbjct: 423 -RADKSRRQTEGRTGLGLA 440


>gi|156394113|ref|XP_001636671.1| predicted protein [Nematostella vectensis]
 gi|156223776|gb|EDO44608.1| predicted protein [Nematostella vectensis]
          Length = 689

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 29  ELIENSLDAESSRVETVIAGG----GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           EL++N+ DA S +++          GK      D+G GM   E+   +Q   + K   D 
Sbjct: 37  ELVDNARDASSKKIDIYTEPAESFLGKFMLCFKDDGDGMDQSEVANVIQFGRSIKRKVDQ 96

Query: 85  SNIHTFG 91
             I  +G
Sbjct: 97  HMIGQYG 103


>gi|145344184|ref|XP_001416617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576843|gb|ABO94910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 662

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S V  V+   G  F  + D+G G+ ++
Sbjct: 60 EVLDNSVDEVQAGHASHVRVVVEENG--FVSVVDDGRGIPTD 99


>gi|89096519|ref|ZP_01169411.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088534|gb|EAR67643.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 334

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 18  EIIER---PSIAIKELIENSL---DAESSRVETVIA---GGGKSFFQITDNGFGMTSEEI 68
           E++      +  I++++ NS+   DA     +  I      G++  +I D G G+   ++
Sbjct: 213 EVLTDGKWLAFIIRQILTNSIKYSDAG----DIKIKSWKQHGQTKLEIRDFGRGIDPRDL 268

Query: 69  PMAVQRHCTS 78
           P    +  TS
Sbjct: 269 PRIFDKGFTS 278


>gi|86132212|ref|ZP_01050807.1| heat shock protein HtpG [Dokdonia donghaensis MED134]
 gi|85817131|gb|EAQ38314.1| heat shock protein HtpG [Dokdonia donghaensis MED134]
          Length = 629

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 26/123 (21%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA                  + ++E  I   GK    I D G GMT EE+ 
Sbjct: 29  LRELISNATDATLKLKHLTSIGESSAEYGNPQIEVKIDKEGKKL-HIIDQGLGMTQEEVE 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQI 121
             + +   S       K  D   +    G  G    S   V+  + ++++  ++   A  
Sbjct: 88  KYINQLAFSGAEEFLNKYEDGAKDTGIIGHFGLGFYSAFMVAEKVEIITKSHKDEPAAHW 147

Query: 122 AIS 124
              
Sbjct: 148 TCD 150


>gi|90421533|ref|YP_529903.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18]
 gi|90103547|gb|ABD85584.1| DNA gyrase subunit B [Rhodopseudomonas palustris BisB18]
          Length = 813

 Score = 43.9 bits (102), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  ++ VE V+   G     + D+G G+ 
Sbjct: 55 VYEVVDNAIDEALAGHATAVEVVLNADG--SVTVRDDGRGIP 94


>gi|288801376|ref|ZP_06406830.1| sensor histidine kinase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331759|gb|EFC70243.1| sensor histidine kinase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 386

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 26  AIKELIENSLDA-ESS-RVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA  S   +   +     G     ++D G G+   +I    +   T+K
Sbjct: 288 VIENLCKNAIDAIGSKGTITIEVMNMKHGV-VVDVSDTGKGIRKADIANVFRPGFTTK 344


>gi|323528169|ref|YP_004230321.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1001]
 gi|323385171|gb|ADX57261.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1001]
          Length = 476

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   +A   G+   Q+ DNG G+ + E     +R   S
Sbjct: 372 LIDNAIRYSGD-GA-VITVRVACEDGEPLLQVIDNGPGIAASERDAVFERFYRS 423


>gi|261342468|ref|ZP_05970326.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315107|gb|EFC54045.1| DNA topoisomerase IV, B subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 21/194 (10%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
                                +       +F  S +   + +T +++  A+  P V  TF
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDGSFFDSPRFSVSRLTHLLKAKAVLCPGVEITF 202

Query: 187 STIKSNRYKMNFQS 200
               +N  +    +
Sbjct: 203 KDNVNNTEQTWCYA 216


>gi|160891682|ref|ZP_02072685.1| hypothetical protein BACUNI_04137 [Bacteroides uniformis ATCC 8492]
 gi|317478257|ref|ZP_07937422.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859089|gb|EDO52520.1| hypothetical protein BACUNI_04137 [Bacteroides uniformis ATCC 8492]
 gi|316905564|gb|EFV27353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 644

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 42/256 (16%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 33  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVTIE 91

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
                   + D G G+   ++  AV +  T  K         + G  G       AL S 
Sbjct: 92  DS--LRVSVRDYGRGIPQGKLVEAVSKLNTGGKYDSKAFK-KSVGLNGVGIKAVNALSS- 147

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
                  + S         ++  +  +  ++        T      +FF   A L    S
Sbjct: 148 ----RFEVRSYRDG-----KVRTAIFEKGTLLSDVTEDSTEESGTYIFFEPDATLFLNYS 198

Query: 161 EQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYKMNFQSTNGNFPERISQVIGED 216
            Q +   +  ++R        ++F         +     +   +        I  + GED
Sbjct: 199 FQNQF--VETLLRNYTYLNTGLTFIYNGQRIVSRHGLEDLLKDNMTSEGLYDIIHLKGED 256

Query: 217 FINNAVELNEKSNEIT 232
                   N+   E  
Sbjct: 257 IEIAFTHTNQYGEEYY 272


>gi|58761287|gb|AAW82358.1| DNA gyrase subunit B [Dehalococcoides sp. KB-1/PCE]
 gi|58761289|gb|AAW82359.1| DNA gyrase subunit B [Dehalococcoides sp. KB-1/VC]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 18/78 (23%)

Query: 16 AGEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          +GE        + E++ NS+D   A    R++ ++   G     + DNG G+  +     
Sbjct: 10 SGE----LHHLVYEIVYNSVDEAMAGVCDRIKVIMFKDG--SVSVEDNGRGIPVD----- 58

Query: 72 VQRHCTSKISDDFSNIHT 89
             H T+KIS     + T
Sbjct: 59 --IHSTTKISA-LETVMT 73


>gi|52144319|ref|YP_082510.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977788|gb|AAU19338.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 6   LSEKIINQIAAGE-IIERPSIAIKELIENSL---DAESSRVETVIAGG-GKSFFQITDNG 60
           L E+II  I A + +I+R   AI  L+ N+L   D   + ++  I    G +   I DNG
Sbjct: 346 LQEEII--IKADQGLIQR---AIVNLVNNALIHTD-NKTLIQVCIKQTIGYTIVTIEDNG 399

Query: 61  FGMTSEEIPMAVQRH 75
            G+   ++P    R+
Sbjct: 400 EGINKSDLPHIFDRY 414


>gi|27378596|ref|NP_770125.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351744|dbj|BAC48750.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 649

 Score = 43.9 bits (102), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA------ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
               +  L+ N+LDA          +       G     ++ D G G+ ++++       
Sbjct: 535 LQQVVLNLVVNALDAMSEIQTGKREINVTTNVSGAWAEIRVGDTGAGIATDDLKSIFNPF 594

Query: 76  CTSK 79
            T+K
Sbjct: 595 FTTK 598


>gi|332765507|gb|EGJ95725.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2930-71]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|326391448|ref|ZP_08212984.1| histidine kinase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992527|gb|EGD50983.1| histidine kinase [Thermoanaerobacter ethanolicus JW 200]
          Length = 181

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIA-GGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  +   I     K   ++   D+G GM  + +        T
Sbjct: 11 LSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMNEKFLKKVTDPFIT 61


>gi|324114937|gb|EGC08902.1| DNA topoisomerase IV [Escherichia fergusonii B253]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|323183615|gb|EFZ69012.1| DNA topoisomerase IV, B subunit [Escherichia coli 1357]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|309793595|ref|ZP_07688021.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7]
 gi|308122552|gb|EFO59814.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 145-7]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|307266697|ref|ZP_07548225.1| histidine kinase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918299|gb|EFN48545.1| histidine kinase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 181

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIA-GGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  +   I     K   ++   D+G GM  + +        T
Sbjct: 11 LSQNSIRAGAKNIYIEINIDTSKDMLKVSIEDDGCGMNEKFLKKVTDPFIT 61


>gi|300937487|ref|ZP_07152312.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1]
 gi|331674577|ref|ZP_08375337.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280]
 gi|300457479|gb|EFK20972.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 21-1]
 gi|331068671|gb|EGI40066.1| DNA topoisomerase IV, B subunit [Escherichia coli TA280]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|302876969|ref|YP_003845602.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|307687660|ref|ZP_07630106.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|302579826|gb|ADL53838.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 41  RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALP 98
            +  ++      +  ++TDNG G+  E++P   +R    K  S+D   I      G A+ 
Sbjct: 248 TIWIIVEETPLYTQIKVTDNGSGIDKEDLPYIFKRFYKGKNASEDSVGI------GLAMA 301

Query: 99  S--IGAV-SHLTLMSRPPQN 115
              I +    L++ S+  + 
Sbjct: 302 KTIIASQGGDLSVTSKKNEG 321


>gi|227499854|ref|ZP_03929947.1| two-component sensor histidine kinase [Anaerococcus tetradius ATCC
           35098]
 gi|227217963|gb|EEI83236.1| two-component sensor histidine kinase [Anaerococcus tetradius ATCC
           35098]
          Length = 441

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  EIIER-PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           ++I+   + AIK     ++D +   +   +A   K+   +ITD+G G+  +++ M  +R 
Sbjct: 338 QVIQNILTNAIK-----AIDRD-GNISIKLADTNKNVTIEITDDGIGIDEDKLDMIFERF 391

Query: 76  CTSKISDDFSNIHTFG 91
              +I DD  N  T G
Sbjct: 392 Y--RI-DDSRNTKTNG 404


>gi|254038199|ref|ZP_04872257.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43]
 gi|300818795|ref|ZP_07099001.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1]
 gi|226839823|gb|EEH71844.1| DNA topoisomerase IV subunit B [Escherichia sp. 1_1_43]
 gi|300528580|gb|EFK49642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 107-1]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|194431743|ref|ZP_03064034.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012]
 gi|194420099|gb|EDX36177.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1012]
 gi|320180944|gb|EFW55865.1| Topoisomerase IV subunit B [Shigella boydii ATCC 9905]
 gi|332086688|gb|EGI91828.1| DNA topoisomerase IV, B subunit [Shigella boydii 5216-82]
 gi|332087296|gb|EGI92426.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 155-74]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|110806923|ref|YP_690443.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401]
 gi|110616471|gb|ABF05138.1| DNA topoisomerase IV subunit B [Shigella flexneri 5 str. 8401]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEERVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|147108|gb|AAA24298.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 601

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|74313568|ref|YP_311987.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046]
 gi|73857045|gb|AAZ89752.1| DNA topoisomerase IV subunit B [Shigella sonnei Ss046]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|30064380|ref|NP_838551.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T]
 gi|56480243|ref|NP_708841.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301]
 gi|30042637|gb|AAP18361.1| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 2457T]
 gi|56383794|gb|AAN44548.2| DNA topoisomerase IV subunit B [Shigella flexneri 2a str. 301]
 gi|281602417|gb|ADA75401.1| DNA topoisomerase IV subunit B [Shigella flexneri 2002017]
 gi|313648143|gb|EFS12589.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2a str. 2457T]
 gi|332752701|gb|EGJ83086.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-671]
 gi|332753086|gb|EGJ83470.1| DNA topoisomerase IV, B subunit [Shigella flexneri 4343-70]
 gi|332754298|gb|EGJ84664.1| DNA topoisomerase IV, B subunit [Shigella flexneri 2747-71]
 gi|333000363|gb|EGK19946.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-218]
 gi|333014767|gb|EGK34112.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-304]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|48425515|pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
           Subunit Complexed With Adpnp
 gi|48425516|pdb|1S16|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda
           Subunit Complexed With Adpnp
          Length = 390

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|194426352|ref|ZP_03058907.1| DNA topoisomerase IV, B subunit [Escherichia coli B171]
 gi|194415660|gb|EDX31927.1| DNA topoisomerase IV, B subunit [Escherichia coli B171]
 gi|323163082|gb|EFZ48915.1| DNA topoisomerase IV, B subunit [Escherichia coli E128010]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|158316191|ref|YP_001508699.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Frankia sp. EAN1pec]
 gi|158111596|gb|ABW13793.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Frankia sp. EAN1pec]
          Length = 558

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 23  PSIAIKELIENSLDA----ES-SRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               +  LI+N+++A    E+  RV   +     G +  +++D G G+   ++  A +R 
Sbjct: 435 LVTVVGNLIDNAIEAAVAGEAPRRVTVSVRTEPDGLT-VRVSDTGHGLDPTQVAAAFERG 493

Query: 76  CTSK 79
            T+K
Sbjct: 494 WTTK 497


>gi|16130926|ref|NP_417502.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82545287|ref|YP_409234.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227]
 gi|89109800|ref|AP_003580.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           W3110]
 gi|157159021|ref|YP_001464491.1| DNA topoisomerase IV subunit B [Escherichia coli E24377A]
 gi|157162506|ref|YP_001459824.1| DNA topoisomerase IV subunit B [Escherichia coli HS]
 gi|170018716|ref|YP_001723670.1| DNA topoisomerase IV subunit B [Escherichia coli ATCC 8739]
 gi|170082573|ref|YP_001731893.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493014|ref|ZP_03000284.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638]
 gi|191167538|ref|ZP_03029350.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A]
 gi|193062072|ref|ZP_03043168.1| DNA topoisomerase IV, B subunit [Escherichia coli E22]
 gi|193067388|ref|ZP_03048356.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019]
 gi|194436719|ref|ZP_03068819.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1]
 gi|209920502|ref|YP_002294586.1| DNA topoisomerase IV subunit B [Escherichia coli SE11]
 gi|218555600|ref|YP_002388513.1| DNA topoisomerase IV subunit B [Escherichia coli IAI1]
 gi|218696736|ref|YP_002404403.1| DNA topoisomerase IV subunit B [Escherichia coli 55989]
 gi|218701804|ref|YP_002409433.1| DNA topoisomerase IV subunit B [Escherichia coli IAI39]
 gi|218706657|ref|YP_002414176.1| DNA topoisomerase IV subunit B [Escherichia coli UMN026]
 gi|238902143|ref|YP_002927939.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952]
 gi|253772132|ref|YP_003034963.1| DNA topoisomerase IV subunit B [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162979|ref|YP_003046087.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606]
 gi|256019052|ref|ZP_05432917.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|256024388|ref|ZP_05438253.1| DNA topoisomerase IV subunit B [Escherichia sp. 4_1_40B]
 gi|260845784|ref|YP_003223562.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|260857163|ref|YP_003231054.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|260869784|ref|YP_003236186.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str.
           11128]
 gi|293406645|ref|ZP_06650571.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412]
 gi|293416475|ref|ZP_06659114.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449370|ref|ZP_06663791.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382385|ref|ZP_06991982.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302]
 gi|300821623|ref|ZP_07101769.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7]
 gi|300901410|ref|ZP_07119496.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1]
 gi|300905833|ref|ZP_07123566.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1]
 gi|300916859|ref|ZP_07133562.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1]
 gi|300923689|ref|ZP_07139716.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1]
 gi|300931916|ref|ZP_07147213.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1]
 gi|300950762|ref|ZP_07164649.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1]
 gi|300958414|ref|ZP_07170554.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1]
 gi|301020021|ref|ZP_07184153.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1]
 gi|301021821|ref|ZP_07185784.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1]
 gi|301301931|ref|ZP_07208065.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1]
 gi|301643601|ref|ZP_07243642.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1]
 gi|307139719|ref|ZP_07499075.1| DNA topoisomerase IV subunit B [Escherichia coli H736]
 gi|307310343|ref|ZP_07589991.1| DNA topoisomerase IV, B subunit [Escherichia coli W]
 gi|312972707|ref|ZP_07786880.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70]
 gi|331643730|ref|ZP_08344861.1| DNA topoisomerase IV, B subunit [Escherichia coli H736]
 gi|331654635|ref|ZP_08355635.1| DNA topoisomerase IV, B subunit [Escherichia coli M718]
 gi|331664646|ref|ZP_08365552.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143]
 gi|331669944|ref|ZP_08370789.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271]
 gi|331679108|ref|ZP_08379780.1| DNA topoisomerase IV, B subunit [Escherichia coli H591]
 gi|331684685|ref|ZP_08385277.1| DNA topoisomerase IV, B subunit [Escherichia coli H299]
 gi|332280153|ref|ZP_08392566.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|464346|sp|P20083|PARE_ECOLI RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|882560|gb|AAA69198.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789408|gb|AAC76066.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           MG1655]
 gi|81246698|gb|ABB67406.1| DNA topoisomerase IV subunit B [Shigella boydii Sb227]
 gi|85675833|dbj|BAE77086.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K12 substr.
           W3110]
 gi|157068186|gb|ABV07441.1| DNA topoisomerase IV, B subunit [Escherichia coli HS]
 gi|157081051|gb|ABV20759.1| DNA topoisomerase IV, B subunit [Escherichia coli E24377A]
 gi|169753644|gb|ACA76343.1| DNA topoisomerase IV, B subunit [Escherichia coli ATCC 8739]
 gi|169890408|gb|ACB04115.1| DNA topoisomerase IV, subunit B [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488213|gb|EDU63316.1| DNA topoisomerase IV, B subunit [Escherichia coli 53638]
 gi|190902395|gb|EDV62132.1| DNA topoisomerase IV, B subunit [Escherichia coli B7A]
 gi|192932292|gb|EDV84890.1| DNA topoisomerase IV, B subunit [Escherichia coli E22]
 gi|192959345|gb|EDV89780.1| DNA topoisomerase IV, B subunit [Escherichia coli E110019]
 gi|194424201|gb|EDX40188.1| DNA topoisomerase IV, B subunit [Escherichia coli 101-1]
 gi|209913761|dbj|BAG78835.1| DNA topoisomerase IV subunit B [Escherichia coli SE11]
 gi|218353468|emb|CAU99567.1| DNA topoisomerase IV, subunit B [Escherichia coli 55989]
 gi|218362368|emb|CAQ99992.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI1]
 gi|218371790|emb|CAR19643.1| DNA topoisomerase IV, subunit B [Escherichia coli IAI39]
 gi|218433754|emb|CAR14671.1| DNA topoisomerase IV, subunit B [Escherichia coli UMN026]
 gi|238860847|gb|ACR62845.1| DNA topoisomerase IV, subunit B [Escherichia coli BW2952]
 gi|242378582|emb|CAQ33369.1| topoisomerase IV subunit B, subunit of topoisomerase IV
           [Escherichia coli BL21(DE3)]
 gi|253323176|gb|ACT27778.1| DNA topoisomerase IV, B subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974880|gb|ACT40551.1| DNA topoisomerase IV subunit B [Escherichia coli B str. REL606]
 gi|253979036|gb|ACT44706.1| DNA topoisomerase IV subunit B [Escherichia coli BL21(DE3)]
 gi|257755812|dbj|BAI27314.1| DNA topoisomerase IV subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|257760931|dbj|BAI32428.1| DNA topoisomerase IV subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|257766140|dbj|BAI37635.1| DNA topoisomerase IV subunit B [Escherichia coli O111:H- str.
           11128]
 gi|260447934|gb|ACX38356.1| DNA topoisomerase IV, B subunit [Escherichia coli DH1]
 gi|291322460|gb|EFE61889.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426651|gb|EFE99683.1| DNA topoisomerase IV subunit B [Escherichia coli FVEC1412]
 gi|291431831|gb|EFF04814.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277525|gb|EFI19041.1| DNA topoisomerase 4 subunit B [Escherichia coli FVEC1302]
 gi|299881978|gb|EFI90189.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 196-1]
 gi|300314923|gb|EFJ64707.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 175-1]
 gi|300355182|gb|EFJ71052.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 198-1]
 gi|300397837|gb|EFJ81375.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 69-1]
 gi|300402302|gb|EFJ85840.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 84-1]
 gi|300415829|gb|EFJ99139.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 115-1]
 gi|300420056|gb|EFK03367.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 182-1]
 gi|300449932|gb|EFK13552.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 116-1]
 gi|300460339|gb|EFK23832.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 187-1]
 gi|300525761|gb|EFK46830.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 119-7]
 gi|300842912|gb|EFK70672.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 124-1]
 gi|301077985|gb|EFK92791.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 146-1]
 gi|306909238|gb|EFN39733.1| DNA topoisomerase IV, B subunit [Escherichia coli W]
 gi|309703462|emb|CBJ02802.1| putative DNA topoisomerase 4 subunit B [Escherichia coli ETEC
           H10407]
 gi|310332649|gb|EFP99862.1| DNA topoisomerase IV, B subunit [Escherichia coli 1827-70]
 gi|315062340|gb|ADT76667.1| DNA topoisomerase IV, subunit B [Escherichia coli W]
 gi|315137623|dbj|BAJ44782.1| DNA topoisomerase IV subunit B [Escherichia coli DH1]
 gi|315256940|gb|EFU36908.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 85-1]
 gi|315617300|gb|EFU97908.1| DNA topoisomerase IV, B subunit [Escherichia coli 3431]
 gi|320201942|gb|EFW76517.1| Topoisomerase IV subunit B [Escherichia coli EC4100B]
 gi|323154726|gb|EFZ40925.1| DNA topoisomerase IV, B subunit [Escherichia coli EPECa14]
 gi|323168127|gb|EFZ53814.1| DNA topoisomerase IV, B subunit [Shigella sonnei 53G]
 gi|323173726|gb|EFZ59355.1| DNA topoisomerase IV, B subunit [Escherichia coli LT-68]
 gi|323178735|gb|EFZ64311.1| DNA topoisomerase IV, B subunit [Escherichia coli 1180]
 gi|323188530|gb|EFZ73815.1| DNA topoisomerase IV, B subunit [Escherichia coli RN587/1]
 gi|323377073|gb|ADX49341.1| DNA topoisomerase IV, B subunit [Escherichia coli KO11]
 gi|323935968|gb|EGB32263.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941871|gb|EGB38050.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946728|gb|EGB42748.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960923|gb|EGB56542.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323971845|gb|EGB67070.1| DNA topoisomerase IV [Escherichia coli TA007]
 gi|324018128|gb|EGB87347.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 117-3]
 gi|324119640|gb|EGC13521.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|331037201|gb|EGI09425.1| DNA topoisomerase IV, B subunit [Escherichia coli H736]
 gi|331048017|gb|EGI20094.1| DNA topoisomerase IV, B subunit [Escherichia coli M718]
 gi|331058577|gb|EGI30558.1| DNA topoisomerase IV, B subunit [Escherichia coli TA143]
 gi|331062857|gb|EGI34771.1| DNA topoisomerase IV, B subunit [Escherichia coli TA271]
 gi|331073173|gb|EGI44496.1| DNA topoisomerase IV, B subunit [Escherichia coli H591]
 gi|331078300|gb|EGI49506.1| DNA topoisomerase IV, B subunit [Escherichia coli H299]
 gi|332102505|gb|EGJ05851.1| DNA topoisomerase IV subunit B [Shigella sp. D9]
 gi|332344985|gb|AEE58319.1| DNA topoisomerase IV, B subunit ParE [Escherichia coli UMNK88]
 gi|332998720|gb|EGK18316.1| DNA topoisomerase IV, B subunit [Shigella flexneri VA-6]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|295702972|ref|YP_003596047.1| two-component sensor histidine kinase DctS [Bacillus megaterium DSM
           319]
 gi|294800631|gb|ADF37697.1| two-component sensor histidine kinase DctS [Bacillus megaterium DSM
           319]
          Length = 521

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 30  LIENSLDA------ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LIEN+ D+         ++   +    G     + DNG GM  +++        ++K  +
Sbjct: 424 LIENAFDSYQHMERRERKIYISMEQNDGILSILVEDNGCGMNEDQVARIFDEGFSTKAKE 483


>gi|317051166|ref|YP_004112282.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946250|gb|ADU65726.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1281

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 18/66 (27%)

Query: 30   LIENSLDA--------------ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQ 73
            L+ NS DA               S  +   I+  G+     +I DNG G+  E +P   +
Sbjct: 1173 LLNNSRDAIMQHRLDHDGQPQDGS--IHVSISRQGRGRLIIRIVDNGGGIDPEVLPRIFE 1230

Query: 74   RHCTSK 79
             + T+K
Sbjct: 1231 PYFTTK 1236


>gi|229056348|ref|ZP_04195766.1| Sensor histidine kinase [Bacillus cereus AH603]
 gi|228721016|gb|EEL72558.1| Sensor histidine kinase [Bacillus cereus AH603]
          Length = 554

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 20  IERPSIAIKELIENSLDAES----SRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQ 73
           I      +  LI+N+LDA +     +VE  I  G        + D G G+  EE+     
Sbjct: 444 IHELITIVGNLIDNALDAVANCKKKQVEVGIQYGDTDTLTITVQDAGKGIQEEEMDALFT 503

Query: 74  RHCTSK 79
           +  ++K
Sbjct: 504 KGYSTK 509


>gi|221230332|ref|YP_002503748.1| heat shock protein 90 [Mycobacterium leprae Br4923]
 gi|219933439|emb|CAR71718.1| heat shock protein Hsp90 family [Mycobacterium leprae Br4923]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 47/160 (29%)

Query: 27  IKELIENSLDA------ESSR---------------VETVIAGGGKSFFQITDNGFGMTS 65
           ++ELI N+ DA      E+ R               +E  +         + DNG GMT 
Sbjct: 33  LRELISNASDALDKLRLEAFRNKDLDPRTVDTSDLHIEIEVDKN-TRILTVRDNGIGMTR 91

Query: 66  E---EIPMAVQRHCTSKISDDFSNIHTF---------------GFRGEALPSIGAVS-HL 106
               ++   + +  T+K+                         GF      S   V+  +
Sbjct: 92  AEVVDLIGTLAKSGTAKLRQKLHAAKNLKDTAASEGLIGQFGIGF-----YSSFMVANKV 146

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVA-MNPGTIVEVR 145
            L++R        + +  GE   ++  V     GT V + 
Sbjct: 147 ELLTRKAGETAATRWSSDGEATYTIESVDEAPQGTSVTLH 186


>gi|254420991|ref|ZP_05034715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196187168|gb|EDX82144.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 546

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTS 78
             ++ D G G+  E +    +R  TS
Sbjct: 461 RIRVEDQGPGIPPENLETVFERFYTS 486


>gi|170759737|ref|YP_001786058.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406726|gb|ACA55137.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R 
Sbjct: 239 IEAISNIVK----NAFDHTQKGNAIYIEWKQF-ASVIQVIIKDNGSGIHPEDLHHIFKRF 293

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 294 YRSRFSKDTQGIG 306


>gi|90420830|ref|ZP_01228735.1| two component sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334805|gb|EAS48577.1| two component sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 477

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 14/67 (20%)

Query: 24  SIAIKELI--------ENSL-----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIP 69
           +   +ELI        +N+L     D   +R+   +    G     ++DNG G+ +++  
Sbjct: 349 ASVSRELIAQALSNLIDNALKYGVADGGGARIAVRLELTDGVCRLSVSDNGPGVPADQRE 408

Query: 70  MAVQRHC 76
             ++R  
Sbjct: 409 RVLERFY 415


>gi|307301500|ref|ZP_07581260.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|152171|gb|AAA63511.1| dicarboxylate sensor protein [Sinorhizobium meliloti]
 gi|306903557|gb|EFN34145.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 621

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAGGGK 51
           IR  L       + N+I       R    +  L++N+L+A       + +V    A GG 
Sbjct: 502 IRIDLPPDGLQALGNRI-------RLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGI 554

Query: 52  SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +   + DNG G+ ++          TSK
Sbjct: 555 AL-TVADNGPGIAADVREELFTPFNTSK 581


>gi|152170|gb|AAA63510.1| dicarboxylate sensor protein [Sinorhizobium meliloti]
          Length = 636

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAGGGK 51
           IR  L       + N+I       R    +  L++N+L+A       + +V    A GG 
Sbjct: 517 IRIDLPPDGLQALGNRI-------RLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGI 569

Query: 52  SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +   + DNG G+ ++          TSK
Sbjct: 570 AL-TVADNGPGIAADVREELFTPFNTSK 596


>gi|152172|gb|AAA63512.1| dicarboxylate sensor protein [Sinorhizobium meliloti]
          Length = 616

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 19/88 (21%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAGGGK 51
           IR  L       + N+I       R    +  L++N+L+A       + +V    A GG 
Sbjct: 497 IRIDLPPDGLQALGNRI-------RLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGI 549

Query: 52  SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +   + DNG G+ ++          TSK
Sbjct: 550 AL-TVADNGPGIAADVREELFTPFNTSK 576


>gi|78061159|ref|YP_371067.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
 gi|77969044|gb|ABB10423.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 19/93 (20%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI--- 46
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+       
Sbjct: 487 RIRDEGVQLD---VN-IAPGTAVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIEAAGP 542

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
              G+  F + D+G G+  E +P   +   T+K
Sbjct: 543 DEAGRVRFTVADSGAGIAPEVLPHLFEPFVTTK 575


>gi|15827855|ref|NP_302118.1| heat shock protein 90 [Mycobacterium leprae TN]
 gi|3122242|sp|O33012|HTPG_MYCLE RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|2251153|emb|CAB10613.1| HtpG protein [Mycobacterium leprae]
 gi|13093407|emb|CAC30574.1| heat shock protein Hsp90 family [Mycobacterium leprae]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.076,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 47/160 (29%)

Query: 27  IKELIENSLDA------ESSR---------------VETVIAGGGKSFFQITDNGFGMTS 65
           ++ELI N+ DA      E+ R               +E  +         + DNG GMT 
Sbjct: 33  LRELISNASDALDKLRLEAFRNKDLDPRTVDTSDLHIEIEVDKN-TRILTVRDNGIGMTR 91

Query: 66  E---EIPMAVQRHCTSKISDDFSNIHTF---------------GFRGEALPSIGAVS-HL 106
               ++   + +  T+K+                         GF      S   V+  +
Sbjct: 92  AEVVDLIGTLAKSGTAKLRQKLHAAKNLKDTAASEGLIGQFGIGF-----YSSFMVANKV 146

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVA-MNPGTIVEVR 145
            L++R        + +  GE   ++  V     GT V + 
Sbjct: 147 ELLTRKAGETAATRWSSDGEATYTIESVDEAPQGTSVTLH 186


>gi|312144191|ref|YP_003995637.1| histidine kinase [Halanaerobium sp. 'sapolanicus']
 gi|311904842|gb|ADQ15283.1| histidine kinase [Halanaerobium sp. 'sapolanicus']
          Length = 185

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 31 IENSLDAESSRVETVI-AGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTS 78
          +ENS  A + ++E  I    G +     I DNG G+  E +        TS
Sbjct: 12 LENSRKAGADKIELKISEDPGDNSFVIIIVDNGKGIKKELLENITDPFVTS 62


>gi|300022255|ref|YP_003754866.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524076|gb|ADJ22545.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 833

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 30  LIENSLDAESS------RVETVIAGGG--KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NS+DA S+       +   +   G   +   I D G G   +E+        T+K
Sbjct: 725 LVRNSVDALSTVTRKKKEISITVTSEGSHFTKIVIADTGCGCPPQELQRLFDPFFTTK 782


>gi|255034417|ref|YP_003085038.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254947173|gb|ACT91873.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1016

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 21/72 (29%)

Query: 25  IAIKELIENSLDAESSR------VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
             I+ LI+NS     ++      +   +   G      +TDNG GM+  ++         
Sbjct: 893 AVIRNLIDNS-----NKYTTGGHIRVELEQAGDHLQLSVTDNGRGMSPADL--------- 938

Query: 78  SKISDDFSNIHT 89
           SKI+   + + T
Sbjct: 939 SKINRRITQVQT 950


>gi|205360803|ref|ZP_02686544.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205346982|gb|EDZ33613.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|197249706|ref|YP_002149081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213409|gb|ACH50806.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|170757632|ref|YP_001780338.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169122844|gb|ACA46680.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R 
Sbjct: 239 IEAISNIVK----NAFDHTQKGNAIYIEWKQF-ASVIQVIIKDNGSGIHPEDLHHIFKRF 293

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 294 YRSRFSKDTQGIG 306


>gi|147676340|ref|YP_001210555.1| type IIA topoisomerase, B subunit [Pelotomaculum
          thermopropionicum SI]
 gi|146272437|dbj|BAF58186.1| type IIA topoisomerase, B subunit [Pelotomaculum
          thermopropionicum SI]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R+E ++   G +   + DNG G+  +
Sbjct: 51 VYEVVDNSIDEAMAGFCDRIEVILNEDGSA--TVIDNGRGIPVD 92


>gi|160881991|ref|YP_001560959.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160430657|gb|ABX44220.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 513

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 41  RVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHC 76
            +   ++  G    Q+   D+G G+ ++++P   +R  
Sbjct: 404 TIRVRLSDAG-DMVQVSIEDDGCGIAAKDLPNIFERFY 440


>gi|89902880|ref|YP_525351.1| PAS/PAC sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89347617|gb|ABD71820.1| PAS/PAC sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 449

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 16  AGEIIERPSIAIKELIENSLDAESS------RVETVIA-GGGKSFFQITDNGFGMTSEEI 68
           AG+        +  LI+N+ DA S+      ++   +   GG+   +  DNG G+  E +
Sbjct: 338 AGQ----LLQVVMNLIQNASDAASTDDATAPQLRISLQQDGGQVRLRFADNGPGIAPEHL 393

Query: 69  PMAVQRHCTSK 79
                   T+K
Sbjct: 394 SRVFDPFFTTK 404


>gi|154141|gb|AAA27148.1| ORF 1 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 208

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 100 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 157

Query: 75  HCTSK 79
           + T+K
Sbjct: 158 YFTTK 162


>gi|54021970|ref|YP_116212.1| DNA gyrase subunit B [Nocardia farcinica IFM 10152]
 gi|54013478|dbj|BAD54848.1| putative DNA gyrase B subunit [Nocardia farcinica IFM 10152]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  ++RV+  + A GG    ++ D+G G+  E
Sbjct: 70  EVVDNSVDEAMAGYATRVDVTLLADGG---VEVVDDGRGIPVE 109


>gi|329849748|ref|ZP_08264594.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328841659|gb|EGF91229.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 388

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 30  LIENSLDAE--SSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN   A   ++     +A  G  +  +I DNG G+  +++    +   
Sbjct: 285 LVEN---AGRYATSCRIELAARGPSAEIRIIDNGPGLPPDQLETVFEPFY 331


>gi|317481982|ref|ZP_07941007.1| hsp90-like protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916549|gb|EFV37946.1| hsp90-like protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 323 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPAKSLDRIFERFY 377


>gi|296453513|ref|YP_003660656.1| histidine kinase [Bifidobacterium longum subsp. longum JDM301]
 gi|296182944|gb|ADG99825.1| histidine kinase [Bifidobacterium longum subsp. longum JDM301]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 323 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPAKSLDRIFERFY 377


>gi|239622509|ref|ZP_04665540.1| sensor protein [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239514506|gb|EEQ54373.1| sensor protein [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 446

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 326 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPAKSLDRIFERFY 380


>gi|229496104|ref|ZP_04389826.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229317000|gb|EEN82911.1| DNA gyrase, B subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 653

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V+  I     +   + DNG G+  +
Sbjct: 48 VYEVVDNSIDEALAGYCTDVKVTILED--NSISVEDNGRGIPVD 89


>gi|227545793|ref|ZP_03975842.1| signal transduction histidine kinase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213909|gb|EEI81748.1| signal transduction histidine kinase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 323 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPAKSLDRIFERFY 377


>gi|269954816|ref|YP_003324605.1| DNA gyrase subunit B [Xylanimonas cellulosilytica DSM 15894]
 gi|269303497|gb|ACZ29047.1| DNA gyrase, B subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  ++  + A GG    ++ DNG G+ 
Sbjct: 43 VTEVVDNSVDEALAGYADTIDVTLLADGG---VRVVDNGRGIP 82


>gi|225873577|ref|YP_002755036.1| putative sensory box histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792472|gb|ACO32562.1| putative sensory box histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 612

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 30  LIENSLDA--ESSRVETVIA------GGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NSLDA   S  +   +        G     +  ++DNG G+  E+         T+K
Sbjct: 483 LLANSLDAMPGSGIIRIHLRQTTASPDGRADGVRLYVSDNGNGIHPEQRQQIFDPFFTTK 542


>gi|213691277|ref|YP_002321863.1| histidine kinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522738|gb|ACJ51485.1| histidine kinase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457341|dbj|BAJ67962.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 459

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 314 TAVKNLVENAI----HYSPEHTTVAVGVAERDGKVTIRVVDQGIGIPAKSLDRIFERFY 368


>gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
 gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
          Length = 587

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N+L   D     V  ++          + D+G G+  E++P   +R  
Sbjct: 479 DRVEQVLTNLIDNALRHTDEG-GEVRVIVDADEEVVRISVQDSGSGIPEEDLPFVFERFY 537


>gi|200387245|ref|ZP_03213857.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604343|gb|EDZ02888.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|195874360|ref|ZP_02701732.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629005|gb|EDX48397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|194449893|ref|YP_002048158.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205359439|ref|ZP_02670061.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194408197|gb|ACF68416.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205336113|gb|EDZ22877.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|153010836|ref|YP_001372050.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151562724|gb|ABS16221.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 462

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 11/54 (20%)

Query: 30  LIENSLDAESS------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L    +       V  VI   G     ++ DNG G+ + E     +R  
Sbjct: 366 LVDNAL----TYTPEGGTVTLVIDQDGPKIDIRVEDNGPGIPANEYEHVFERFY 415


>gi|319427074|gb|ADV55148.1| sensor histidine kinase with PAS sensory domain for flagellar
           biosynthesis, FlrB [Shewanella putrefaciens 200]
          Length = 360

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A +S++  +          ++ DNG G+ ++     ++   T+K
Sbjct: 249 LSSAINNLVINSIEAGASQIRILATESKDQLMLEVIDNGKGLDAKMQQKVMEPFFTTK 306


>gi|153005403|ref|YP_001379728.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028976|gb|ABS26744.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 823

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 22  RPSIAIKELIENS---L---DAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQ 73
           R +     L+ N+   +   DA+S  +        GG+   ++ D G G++   +P   +
Sbjct: 571 RLAQVFVNLLANAAQAIPEGDAQSHVIRISAREQPGGRVAVEVADTGSGISPAVLPRIFE 630

Query: 74  RHCTSKIS 81
              T+K++
Sbjct: 631 PFFTTKVA 638


>gi|56415999|ref|YP_153074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364926|ref|YP_002144563.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130256|gb|AAV79762.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096403|emb|CAR62008.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|12045055|ref|NP_072865.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37]
 gi|1352716|sp|P47445|PARE_MYCGE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
          Full=Topoisomerase IV subunit B
 gi|3844801|gb|AAC71421.1| DNA topoisomerase IV, B subunit [Mycoplasma genitalium G37]
 gi|166078913|gb|ABY79531.1| DNA topoisomerase IV, B subunit [synthetic Mycoplasma genitalium
          JCVI-1.0]
          Length = 633

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E++ NS+D   A  ++ +   +     +   ++D+G G+  E
Sbjct: 41 EILANSVDEVLAGYATNITVTLDLN--NTITVSDDGRGIPYE 80


>gi|23464918|ref|NP_695521.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum NCC2705]
 gi|312133343|ref|YP_004000682.1| vick [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688477|ref|YP_004208211.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690487|ref|YP_004220057.1| two-component sensor kinase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|23325511|gb|AAN24157.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum NCC2705]
 gi|291517415|emb|CBK71031.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Bifidobacterium longum
           subsp. longum F8]
 gi|311772563|gb|ADQ02051.1| VicK [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455343|dbj|BAJ65965.1| two-component sensor kinase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320459813|dbj|BAJ70433.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 323 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPAKSLDRIFERFY 377


>gi|16767427|ref|NP_463042.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205358145|ref|ZP_02576065.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|17865735|sp|P37461|ZRAS_SALTY RecName: Full=Sensor protein zraS
 gi|6960345|gb|AAF33505.1| Salmonella typhimurium sensor protein (HYDH) (SW:P37461); contains
           similarity to Pfam domain PF00512 (signal), Score=270.1,
           E=2.9e-77, N=1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422732|gb|AAL23001.1| sensory kinase in two component regulatory system with HydG
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205327269|gb|EDZ14033.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249277|emb|CBG27139.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301160669|emb|CBW20200.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915279|dbj|BAJ39253.1| sensor kinase ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223373|gb|EFX48440.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332990992|gb|AEF09975.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|23335807|ref|ZP_00121039.1| COG0642: Signal transduction histidine kinase [Bifidobacterium
           longum DJO10A]
 gi|189439937|ref|YP_001955018.1| signal transduction histidine kinase [Bifidobacterium longum
           DJO10A]
 gi|189428372|gb|ACD98520.1| Signal transduction histidine kinase [Bifidobacterium longum
           DJO10A]
          Length = 443

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 25  IAIKELIENSLDAES------SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN++          + V   +    GK   ++ D G G+ ++ +    +R  
Sbjct: 323 TAVKNLVENAI----HYSPEHTTVAVGVGERDGKVTIRVVDQGIGIPAKSLDRIFERFY 377


>gi|306839001|ref|ZP_07471822.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653]
 gi|306405907|gb|EFM62165.1| DNA topoisomerase IV, B subunit [Brucella sp. NF 2653]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 77  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 119


>gi|306841761|ref|ZP_07474447.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2]
 gi|306288166|gb|EFM59553.1| DNA topoisomerase IV, B subunit [Brucella sp. BO2]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 77  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 119


>gi|306845925|ref|ZP_07478492.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1]
 gi|306273560|gb|EFM55405.1| DNA topoisomerase IV, B subunit [Brucella sp. BO1]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 77  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 119


>gi|298385663|ref|ZP_06995221.1| heat shock protein HtpG [Bacteroides sp. 1_1_14]
 gi|298261804|gb|EFI04670.1| heat shock protein HtpG [Bacteroides sp. 1_1_14]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     +   +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTIHVEL---GKDTITISDRGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++       
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYRDEAQ 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AIKWTCD 147


>gi|297154681|gb|ADI04393.1| sensory histidine kinase [Streptomyces bingchenggensis BCW-1]
          Length = 249

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 26  AIKELIENSL-DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            ++ L++N+   A   +V   +   GG     ++D+G G+   +      R  
Sbjct: 138 VVRNLLDNARRHAG-RQVRVALGERGGTVELTVSDDGSGIPPADRLRVFDRFT 189


>gi|254720422|ref|ZP_05182233.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
 gi|265985441|ref|ZP_06098176.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
 gi|264664033|gb|EEZ34294.1| DNA topoisomerase IV subunit B [Brucella sp. 83/13]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 138


>gi|254711140|ref|ZP_05172951.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|256029521|ref|ZP_05443135.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
 gi|261318731|ref|ZP_05957928.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|265986529|ref|ZP_06099086.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
 gi|261297954|gb|EEY01451.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis B2/94]
 gi|264658726|gb|EEZ28987.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M292/94/1]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 138


>gi|225629085|ref|ZP_03787118.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo]
 gi|260167389|ref|ZP_05754200.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
 gi|261756798|ref|ZP_06000507.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
 gi|225615581|gb|EEH12630.1| DNA topoisomerase IV, B subunit [Brucella ceti str. Cudo]
 gi|261736782|gb|EEY24778.1| DNA topoisomerase IV subunit B [Brucella sp. F5/99]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 138


>gi|163844743|ref|YP_001622398.1| DNA topoisomerase IV subunit B [Brucella suis ATCC 23445]
 gi|163675466|gb|ABY39576.1| DNA topoisomerase IV, B subunit [Brucella suis ATCC 23445]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 138


>gi|161620653|ref|YP_001594539.1| DNA topoisomerase IV subunit B [Brucella canis ATCC 23365]
 gi|254702966|ref|ZP_05164794.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
 gi|260568121|ref|ZP_05838590.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40]
 gi|261753574|ref|ZP_05997283.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
 gi|161337464|gb|ABX63768.1| DNA topoisomerase IV, B subunit [Brucella canis ATCC 23365]
 gi|260154786|gb|EEW89867.1| DNA topoisomerase IV subunit B [Brucella suis bv. 4 str. 40]
 gi|261743327|gb|EEY31253.1| DNA topoisomerase IV subunit B [Brucella suis bv. 3 str. 686]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 138


>gi|154149856|ref|YP_001403474.1| multi-sensor signal transduction histidine kinase [Candidatus
           Methanoregula boonei 6A8]
 gi|153998408|gb|ABS54831.1| multi-sensor signal transduction histidine kinase [Methanoregula
           boonei 6A8]
          Length = 657

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 38  ESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
             +R+     I+G G     + DNG G+  E+ P   +R
Sbjct: 570 GVTRITISPHISGAGL-IITVEDNGKGIPGEDKPHVFER 607


>gi|148558666|ref|YP_001257579.1| DNA topoisomerase IV subunit B [Brucella ovis ATCC 25840]
 gi|189022806|ref|YP_001932547.1| DNA topoisomerase IV subunit B [Brucella abortus S19]
 gi|148369951|gb|ABQ62823.1| DNA topoisomerase IV, B subunit [Brucella ovis ATCC 25840]
 gi|189021380|gb|ACD74101.1| DNA topoisomerase IV subunit B [Brucella abortus S19]
 gi|326410748|gb|ADZ67812.1| DNA topoisomerase IV subunit B [Brucella melitensis M28]
 gi|326554041|gb|ADZ88680.1| DNA topoisomerase IV subunit B [Brucella melitensis M5-90]
          Length = 680

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 77  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 119


>gi|86358574|ref|YP_470466.1| two-component sensor histidine kinase protein regulating
           C4-dicarboxylate transport system [Rhizobium etli CFN
           42]
 gi|86282676|gb|ABC91739.1| two-component sensor histidine kinase protein regulating
           C4-dicarboxylate transport system [Rhizobium etli CFN
           42]
          Length = 619

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 17/89 (19%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L++N+L+A      + RVE   +         + DNG G++ E         
Sbjct: 516 RLEQVLINLLQNALEAVAPKAGAGRVEVRTSADAETVTLTVADNGPGISPEIRKGLFTPF 575

Query: 76  CTSK---------ISDDFSNIHTFGFRGE 95
            TSK         IS D   +  +G R E
Sbjct: 576 NTSKEKGLGLGLVISKDI--VGDYGGRME 602


>gi|29346307|ref|NP_809810.1| heat shock protein 90 [Bacteroides thetaiotaomicron VPI-5482]
 gi|81587091|sp|Q8A9B8|HTPG_BACTN RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|29338202|gb|AAO76004.1| chaperone protein htpG (heat shock protein htpG) [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     +   +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTIHVEL---GKDTITISDRGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++       
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYRDEAQ 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AIKWTCD 147


>gi|17989021|ref|NP_541654.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|62317552|ref|YP_223405.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 1 str. 9-941]
 gi|83269533|ref|YP_418824.1| DNA topoisomerase IV subunit B [Brucella melitensis biovar Abortus
           2308]
 gi|225686377|ref|YP_002734349.1| DNA topoisomerase IV subunit B [Brucella melitensis ATCC 23457]
 gi|237817100|ref|ZP_04596092.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A]
 gi|254691049|ref|ZP_05154303.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|254695645|ref|ZP_05157473.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|254698833|ref|ZP_05160661.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699828|ref|ZP_05161656.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|254705913|ref|ZP_05167741.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|254712402|ref|ZP_05174213.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|254715474|ref|ZP_05177285.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|254732280|ref|ZP_05190858.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|256015368|ref|YP_003105377.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915]
 gi|256043489|ref|ZP_05446416.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256059216|ref|ZP_05449422.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|256111492|ref|ZP_05452506.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|256157716|ref|ZP_05455634.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|256253313|ref|ZP_05458849.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|256256234|ref|ZP_05461770.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|256262482|ref|ZP_05465014.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str.
           63/9]
 gi|260544788|ref|ZP_05820609.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038]
 gi|260564683|ref|ZP_05835168.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260756645|ref|ZP_05868993.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|260760075|ref|ZP_05872423.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|260763314|ref|ZP_05875646.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882462|ref|ZP_05894076.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|261216044|ref|ZP_05930325.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|261217208|ref|ZP_05931489.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|261220428|ref|ZP_05934709.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|261313342|ref|ZP_05952539.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|261320079|ref|ZP_05959276.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|261323165|ref|ZP_05962362.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|261750301|ref|ZP_05994010.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|265989906|ref|ZP_06102463.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265992989|ref|ZP_06105546.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|265996221|ref|ZP_06108778.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|294853612|ref|ZP_06794284.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|297249591|ref|ZP_06933292.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196]
 gi|17984860|gb|AAL53918.1| DNA gyrase subunit b [Brucella melitensis bv. 1 str. 16M]
 gi|62197745|gb|AAX76044.1| ParE, DNA topoisomerase IV, B subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82939807|emb|CAJ12815.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Brucella melitensis biovar Abortus 2308]
 gi|225642482|gb|ACO02395.1| DNA topoisomerase IV, B subunit [Brucella melitensis ATCC 23457]
 gi|237787913|gb|EEP62129.1| DNA topoisomerase IV, B subunit [Brucella abortus str. 2308 A]
 gi|255998028|gb|ACU49715.1| DNA topoisomerase IV subunit B [Brucella microti CCM 4915]
 gi|260098059|gb|EEW81933.1| DNA topoisomerase IV subunit B [Brucella abortus NCTC 8038]
 gi|260152326|gb|EEW87419.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str. 16M]
 gi|260670393|gb|EEX57333.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 4 str. 292]
 gi|260673735|gb|EEX60556.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676753|gb|EEX63574.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 6 str. 870]
 gi|260871990|gb|EEX79059.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 9 str. C68]
 gi|260917651|gb|EEX84512.1| DNA topoisomerase IV subunit B [Brucella abortus bv. 3 str. Tulya]
 gi|260919012|gb|EEX85665.1| DNA topoisomerase IV subunit B [Brucella ceti B1/94]
 gi|260922297|gb|EEX88865.1| DNA topoisomerase IV subunit B [Brucella ceti M13/05/1]
 gi|261292769|gb|EEX96265.1| DNA topoisomerase IV subunit B [Brucella ceti M644/93/1]
 gi|261299145|gb|EEY02642.1| DNA topoisomerase IV subunit B [Brucella neotomae 5K33]
 gi|261302368|gb|EEY05865.1| DNA topoisomerase IV subunit B [Brucella pinnipedialis M163/99/10]
 gi|261740054|gb|EEY27980.1| DNA topoisomerase IV subunit B [Brucella suis bv. 5 str. 513]
 gi|262550518|gb|EEZ06679.1| DNA topoisomerase IV subunit B [Brucella ceti M490/95/1]
 gi|262763859|gb|EEZ09891.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 3 str.
           Ether]
 gi|263000575|gb|EEZ13265.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263092218|gb|EEZ16515.1| DNA topoisomerase IV subunit B [Brucella melitensis bv. 2 str.
           63/9]
 gi|294819267|gb|EFG36267.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|297173460|gb|EFH32824.1| DNA topoisomerase IV, B subunit [Brucella abortus bv. 5 str. B3196]
          Length = 699

 Score = 43.9 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +E P
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVDEHP 138


>gi|295318143|gb|ADF98520.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R 
Sbjct: 243 IEAISNIVK----NAFDHTQKGNAIYIEWKQF-ASVIQVIIKDNGSGIHPEDLHHIFKRF 297

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 298 YRSRFSKDTQGIG 310


>gi|170737287|ref|YP_001778547.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169819475|gb|ACA94057.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 22/96 (22%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI--- 46
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+       
Sbjct: 483 RIRDEGVRLD---VN-IAPGTTVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIEAAEI 538

Query: 47  ---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                 G+    + D+G G+  + +P   +   T+K
Sbjct: 539 NDADDAGRVRLTVADSGAGIAPDVLPHLFEPFVTTK 574


>gi|153939251|ref|YP_001390057.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935147|gb|ABS40645.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R 
Sbjct: 239 IEAISNIVK----NAFDHTQKGNAIYIEWKQF-ASVIQVIIKDNGSGIHPEDLHHIFKRF 293

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 294 YRSRFSKDTQGIG 306


>gi|126662124|ref|ZP_01733123.1| heat shock protein 90 [Flavobacteria bacterium BAL38]
 gi|126625503|gb|EAZ96192.1| heat shock protein 90 [Flavobacteria bacterium BAL38]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 26/123 (21%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N+ DA           E+        +E  I   GK    I D G GMT++E+ 
Sbjct: 29  LRELVSNATDATLKLKHLTSIGEAKVEYGNPIIEVKIDKEGKKL-HIIDQGLGMTADEVE 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQI 121
             + +   S       K  D   +    G  G    S   V S + ++++  ++   A  
Sbjct: 88  KYINQIAFSGAEEFLEKYKDSAKDSGVIGHFGLGFYSAFMVASKVEIITKSYKDEPAAHW 147

Query: 122 AIS 124
              
Sbjct: 148 TCD 150


>gi|53721102|ref|YP_110087.1| C4-dicarboxylate transport sensor kinase [Burkholderia pseudomallei
           K96243]
 gi|167818120|ref|ZP_02449800.1| C4-dicarboxylate transport sensor kinase [Burkholderia pseudomallei
           91]
 gi|52211516|emb|CAH37506.1| putative C4-dicarboxylate transport sensor kinase [Burkholderia
           pseudomallei K96243]
          Length = 643

 Score = 43.9 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAES-----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +      +V       G      + D+G G+ ++ +P   +   T+K
Sbjct: 529 LLTNAIDASAAGMDNRQVVVTTDVAGDIVRISVADSGKGIPADVMPQLFEPFFTTK 584


>gi|320160971|ref|YP_004174195.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319994824|dbj|BAJ63595.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 519

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 20/88 (22%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETV---IAGGGKSFF----QITDNGFGMTSEEIP 69
           +R      ELI+N++  +S+     +      I   G         ++D G G++ E+I 
Sbjct: 383 QRMVQVFSELIQNAI--KSTPDHRDIFITGKTIEDTGSGKIFVQITVSDTGIGISPEDIE 440

Query: 70  MAVQRHCTSKISDDFSNIHTFG---FRG 94
              ++    +I D    +H+ G   F+G
Sbjct: 441 KIFEKFY--RIGDVL--LHSTGDTKFKG 464


>gi|310815577|ref|YP_003963541.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308754312|gb|ADO42241.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 411

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 17/83 (20%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ N+ DA  ++      V   +A G      + DNG G+  +++    +   T+K   D
Sbjct: 307 LLRNAFDA--TQGTPHPEVTITLAQGETVTLTVRDNGPGI--DDLDALFEPFYTTKAPGD 362

Query: 84  FSNIHTFGFRGEALPSIGAVSHL 106
              +      G A+ S G V+ L
Sbjct: 363 GVGL------GLAISS-GIVADL 378


>gi|262165090|ref|ZP_06032827.1| sensor kinase CitA [Vibrio mimicus VM223]
 gi|262024806|gb|EEY43474.1| sensor kinase CitA [Vibrio mimicus VM223]
          Length = 566

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 23  PSIAIKELIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
            +  +  L++N+        D+    +  ++   G+    ++ DNG G++++       +
Sbjct: 444 LAAVLGNLLDNAFEATLKNPDSN-KTISLLLTDNGEELVIEVADNGNGISADIAQTLFLK 502

Query: 75  HCTSK 79
             +SK
Sbjct: 503 GVSSK 507


>gi|262172149|ref|ZP_06039827.1| sensor kinase CitA [Vibrio mimicus MB-451]
 gi|261893225|gb|EEY39211.1| sensor kinase CitA [Vibrio mimicus MB-451]
          Length = 537

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 23  PSIAIKELIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
            +  +  L++N+        D+    +  ++   G+    ++ DNG G++++       +
Sbjct: 415 LAAVLGNLLDNAFEATLKNPDSN-KTISLLLTDNGEELVIEVADNGNGISADIAQTLFLK 473

Query: 75  HCTSK 79
             +SK
Sbjct: 474 GVSSK 478


>gi|258619979|ref|ZP_05715019.1| Sensor kinase citA [Vibrio mimicus VM573]
 gi|258587712|gb|EEW12421.1| Sensor kinase citA [Vibrio mimicus VM573]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 23  PSIAIKELIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
            +  +  L++N+        D+    +  ++   G+    ++ DNG G++++       +
Sbjct: 464 LAAVLGNLLDNAFEATLKNPDSN-KTISLLLTDNGEELVIEVADNGNGISADIAQTLFLK 522

Query: 75  HCTSK 79
             +SK
Sbjct: 523 GVSSK 527


>gi|258627210|ref|ZP_05721998.1| Sensor kinase citA [Vibrio mimicus VM603]
 gi|258580512|gb|EEW05473.1| Sensor kinase citA [Vibrio mimicus VM603]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 23  PSIAIKELIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
            +  +  L++N+        D+    +  ++   G+    ++ DNG G++++       +
Sbjct: 464 LAAVLGNLLDNAFEATLKNPDSN-KTISLLLTDNGEELVIEVADNGNGISADIAQTLFLK 522

Query: 75  HCTSK 79
             +SK
Sbjct: 523 GVSSK 527


>gi|225569869|ref|ZP_03778894.1| hypothetical protein CLOHYLEM_05963 [Clostridium hylemonae DSM
           15053]
 gi|225161339|gb|EEG73958.1| hypothetical protein CLOHYLEM_05963 [Clostridium hylemonae DSM
           15053]
          Length = 508

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 14  IAAGEIIERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEI 68
           IA  E I+R    I  ++ NSL   D    ++   +   G  F Q+   DNG G+ ++++
Sbjct: 388 IADAEQIKR---VIHNIVNNSLKYMDKSKGKINLRVKDVG-DFIQVEVEDNGKGIAAKDL 443

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
           P    R        D S   + G  G  L SI
Sbjct: 444 PNIFDRFY----RTDASRNSSKGGSGIGL-SI 470


>gi|222147899|ref|YP_002548856.1| sensory transduction regulatory protein [Agrobacterium vitis S4]
 gi|221734887|gb|ACM35850.1| sensory transduction regulatory protein [Agrobacterium vitis S4]
          Length = 391

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 26  AIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTS-EEIPMAVQ 73
            + EL+ N+L     D  +  +       GK +   ITDNG GM    + P A  
Sbjct: 292 VVTELVINALKHAFPDGRAGMIAIDYRSAGKDWALTITDNGIGMPVGNDAPKAGL 346


>gi|194339091|gb|ACF49461.1| GyrB [Amycolatopsis nigrescens]
          Length = 463

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          I+E+++NS+D   A  +S++E  + A GG    ++ D+G G+ 
Sbjct: 4  IQEVVDNSVDEAMAGYASKIEVTLLADGG---VRVVDDGRGIP 43


>gi|84497177|ref|ZP_00995999.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649]
 gi|84382065|gb|EAP97947.1| DNA topoisomerase IV subunit B [Janibacter sp. HTCC2649]
          Length = 719

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           E+++N++D   A  +  ++  + G G    Q+ DNG G+ 
Sbjct: 100 EIVDNAVDESLAGHADTIDVTLLGNG--GVQVKDNGRGIP 137


>gi|83945803|ref|ZP_00958146.1| sensor histidine kinase [Oceanicaulis alexandrii HTCC2633]
 gi|83850806|gb|EAP88668.1| sensor histidine kinase [Oceanicaulis alexandrii HTCC2633]
          Length = 533

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%)

Query: 30  LIENSLDAESSR------VETVIAGG-GKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           LIEN++    +       V   I  G G+S   +I D+G G+  + +     R  T
Sbjct: 426 LIENAV----TFSPAEGGVRVRIERGAGQSQEVRIEDDGPGIPEDNLEAIFDRFYT 477


>gi|317486106|ref|ZP_07944953.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6]
 gi|316922629|gb|EFV43868.1| DNA gyrase subunit B [Bilophila wadsworthia 3_1_6]
          Length = 795

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R+E V+     +   + DNG G+  +
Sbjct: 42 VYEVVDNSIDEAMAGYCTRIEVVLHMD--NSVTVRDNGRGIPVD 83


>gi|307746967|gb|ADN90237.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni M1]
 gi|315931303|gb|EFV10272.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|283956181|ref|ZP_06373666.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792335|gb|EFC31119.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 1336]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|266624459|ref|ZP_06117394.1| histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288863681|gb|EFC95979.1| histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 601

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 31  IENSLDAE---SSR---VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           +EN++ +    S R   +   +    G     +TDNG G++ E I   +    TS+I+
Sbjct: 500 VENAIFSGIEPSGRTGLITIRVWVKSGVLHISVTDNGIGISPENIEKLLTD--TSRIT 555


>gi|256838870|ref|ZP_05544380.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739789|gb|EEU53113.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A     S ++    +   G     + DNG G+  E I        T+K
Sbjct: 235 LLKNAIEACEESLSPQIIVEAVQKNGMVIISVIDNGSGIVPEAIDKIFVPFFTTK 289


>gi|226315466|ref|YP_002775362.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098416|dbj|BAH46858.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 583

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 24/102 (23%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH----CTSKISDDFSNIHTFGFRG 94
           + +       G      + DNG GM  E      +R+     T    +D ++    G   
Sbjct: 492 TVITVRTETAGDDALIIVEDNGIGMDEETRRNLFERYYRGTHT----EDRTDGAGLGM-- 545

Query: 95  EALPSIG---AVSH---LTLMSRPPQNNTGAQIAISGEKISS 130
               SI    +++H   + + SR     +G +I +   +   
Sbjct: 546 ----SIAKAISIAHKGGIEVESR---EGSGTRIVLRFPQTDQ 580


>gi|224149515|ref|XP_002336821.1| predicted protein [Populus trichocarpa]
 gi|222836957|gb|EEE75350.1| predicted protein [Populus trichocarpa]
          Length = 891

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 29  ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           EL+ N+ DA +S V+  I    +    + D+G GM + +  
Sbjct: 273 ELVANAWDAGASLVDLTIPPTNELVLTVEDDGHGMNAGQFK 313


>gi|218283252|ref|ZP_03489313.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
 gi|218216007|gb|EEC89545.1| hypothetical protein EUBIFOR_01902 [Eubacterium biforme DSM 3989]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           E+++N +D   A  ++R++  I         + DNG GM 
Sbjct: 63  EIVDNGIDEALAGFANRIDVTIEPDNI--IAVRDNGRGMP 100


>gi|205355744|ref|ZP_03222514.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346521|gb|EDZ33154.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|254446285|ref|ZP_05059761.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260593|gb|EDY84901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 794

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 30  LIENSLDAESSR--VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA +    +   ++    +   +I D+G GM  E     ++   T+K
Sbjct: 563 LIINAVDAMARDGDITVGVSDRDERVRIEIADSGCGMNEETRRKCLEPFYTTK 615


>gi|157414325|ref|YP_001481581.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385289|gb|ABV51604.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81116]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|98990336|gb|ABF60236.1| DNA gyrase subunit B [Mesoplasma photuris]
          Length = 557

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAVQR-H 75
          E+++NS+D   A  ++ ++  I   G     + DNG G+     E+     I +   + H
Sbjct: 14 EIVDNSIDEAMAGMANLIKITITNEG--EVIVEDNGRGIPVGIQEDSGKRAIELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K       I 
Sbjct: 72 AGGKFDSSSYKIS 84


>gi|148926822|ref|ZP_01810501.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844547|gb|EDK21654.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|123967056|ref|YP_001012137.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123201422|gb|ABM73030.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9515]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E V+   G +    +DNG G+ ++
Sbjct: 48 VYEVVDNSVDEALAGHCDQIEIVLKDDGSASI--SDNGRGIPTD 89


>gi|153951349|ref|YP_001397276.1| DNA gyrase subunit B [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938795|gb|ABS43536.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|48094245|gb|AAT40430.1| DNA gyrase subunit B [Campylobacter jejuni]
 gi|315057444|gb|ADT71773.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni S3]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|3695371|gb|AAC62775.1| DNA gyrase subunit B [Campylobacter jejuni]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 12 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 51


>gi|57236917|ref|YP_178032.1| DNA gyrase subunit B [Campylobacter jejuni RM1221]
 gi|57165721|gb|AAW34500.1| DNA gyrase, B subunit [Campylobacter jejuni RM1221]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|38232647|ref|NP_938414.1| DNA gyrase subunit B [Corynebacterium diphtheriae NCTC 13129]
 gi|38198905|emb|CAE48516.1| DNA gyrase subunit B [Corynebacterium diphtheriae]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ V+  + A GG    ++ DNG G+  E
Sbjct: 48 EVVDNSVDEAMAGYATHVDVTLLADGG---VEVVDNGRGIPVE 87


>gi|86153959|ref|ZP_01072161.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
          HB93-13]
 gi|85842497|gb|EAQ59710.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
          HB93-13]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|86150547|ref|ZP_01068771.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152360|ref|ZP_01070570.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|121612557|ref|YP_999722.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004699|ref|ZP_02270457.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315123619|ref|YP_004065623.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
          ICDCCJ07001]
 gi|85838999|gb|EAQ56264.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840657|gb|EAQ57909.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|87249029|gb|EAQ71991.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 81-176]
 gi|315017341|gb|ADT65434.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni
          ICDCCJ07001]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|88597733|ref|ZP_01100966.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561696|ref|YP_002343475.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC
          11168]
 gi|9297098|sp|O87667|GYRB_CAMJE RecName: Full=DNA gyrase subunit B
 gi|88190037|gb|EAQ94013.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359402|emb|CAL34184.1| DNA gyrase subunit B [Campylobacter jejuni subsp. jejuni NCTC
          11168]
 gi|284925306|gb|ADC27658.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315928458|gb|EFV07770.1| DNA gyrase B subunit [Campylobacter jejuni subsp. jejuni
          DFVF1099]
 gi|315930330|gb|EFV09418.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 305]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTIDVEITTEG--SCIVSDNGRGIPVD 80


>gi|307719924|ref|YP_003891064.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294]
 gi|306978017|gb|ADN08052.1| DNA gyrase subunit B [Sulfurimonas autotrophica DSM 16294]
          Length = 772

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A     +   +   G    +++DNG G+ ++
Sbjct: 39 VYEVIDNSIDEAMAGYCDTITVTLTKNGT--CKVSDNGRGIPTD 80


>gi|205360185|ref|ZP_02835113.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340594|gb|EDZ27358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088603|emb|CBY98362.1| sensor kinase for HydG, hydrogenase 3 activity [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 357 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 414

Query: 75  HCTSK 79
           + T+K
Sbjct: 415 YFTTK 419


>gi|254417874|ref|ZP_05031598.1| histidine kinase A domain protein [Brevundimonas sp. BAL3]
 gi|196184051|gb|EDX79027.1| histidine kinase A domain protein [Brevundimonas sp. BAL3]
          Length = 524

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 23  PSI----AIKELIENSLDAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           P+      +  L+ENS  A ++ V    A        +T  D+G G+   +     +   
Sbjct: 419 PASTIEMVVSTLLENSRQAGATAVSIR-AAALPDRLVVTLADDGPGVAPADAGRVFEPFF 477

Query: 77  T 77
           T
Sbjct: 478 T 478


>gi|126640690|ref|YP_001083674.1| DNA mismatch repair enzyme [Acinetobacter baumannii ATCC 17978]
          Length = 670

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 33 NSLDAESSRVETVIAGGGKSFFQ--ITDNGFGMTS 65
          NS+DA ++++   +    K   Q  I D+G G T 
Sbjct: 2  NSIDANATQINIKLWLNAKKHLQFEIIDDGKGFTK 36


>gi|89890612|ref|ZP_01202122.1| DNA gyrase subunit B [Flavobacteria bacterium BBFL7]
 gi|89517527|gb|EAS20184.1| DNA  gyrase subunit B [Flavobacteria bacterium BBFL7]
          Length = 646

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +   I     +   +TD+G G+ 
Sbjct: 44 VYEVVDNSIDEALAGHCNNITVAINED--NSITVTDDGRGIP 83


>gi|13471034|ref|NP_102603.1| DNA topoisomerase IV subunit B [Mesorhizobium loti MAFF303099]
 gi|14021778|dbj|BAB48389.1| DNA topoisomerase [Mesorhizobium loti MAFF303099]
          Length = 685

 Score = 43.9 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  ++  G  F  +TDNG G+  +
Sbjct: 82  EVIDNSMDEAVAGHATFIDVELSADG--FLTVTDNGRGIPVD 121


>gi|296283894|ref|ZP_06861892.1| two-component signal transduction histidine kinase [Citromicrobium
           bathyomarinum JL354]
          Length = 784

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 9/49 (18%)

Query: 30  LIENSLDA----ESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAV 72
           L++N+++A       R+   +    GG     I+DNG GM   E+ +A+
Sbjct: 685 LLDNAIEASGEKG--RILVDLAKQDGGV-RIVISDNGRGMDENELALAL 730


>gi|290490548|dbj|BAI79261.1| DNA gyrase subunit B [Tomitella biformata]
 gi|290490550|dbj|BAI79262.1| DNA gyrase subunit B [Tomitella biformata]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S V   +   G    Q++D+G G+  E
Sbjct: 13 EVVDNSIDEAMAGYASAVHVSLLDDGA--VQVSDDGRGIPVE 52


>gi|254787141|ref|YP_003074570.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
           domain-containing protein [Teredinibacter turnerae
           T7901]
 gi|237684151|gb|ACR11415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Teredinibacter turnerae T7901]
          Length = 537

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 17  GEIIERPSIAIKELIENSL-------DAE-----SSRVETVIAGGGKSFFQITDNGFGMT 64
           G+++         L+ N+L       D       + +V   +A  G     I+D+G G+ 
Sbjct: 415 GQVVTN-------LLNNALIHGFDGRDHGEIWISAEQVNI-LAEPGV-RIVISDDGNGIP 465

Query: 65  SEEIPMAVQRHCTSKISD 82
            E +        T+K+ +
Sbjct: 466 PENLGRIFDPFFTTKLGE 483


>gi|209525244|ref|ZP_03273786.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
 gi|209494259|gb|EDZ94572.1| DNA gyrase, B subunit [Arthrospira maxima CS-328]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +  ++TD+G G+  +
Sbjct: 39 VYEVVDNSVDEALAGYCTHIEVEINPD--NSVRVTDDGRGIPID 80


>gi|148377448|ref|YP_001256324.1| topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
 gi|148291494|emb|CAL58880.1| Topoisomerase IV subunit B [Mycoplasma agalactiae PG2]
          Length = 641

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AESSR-VETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+++NS+D   A  +  +  ++   G     ++DNG G+           + +   + H 
Sbjct: 45  EIVDNSIDEALAGETNEIIVILKKDG--SVVVSDNGRGIPVGKTPSGKSAVELVFTELHA 102

Query: 77  TSKISD 82
             K ++
Sbjct: 103 GGKFNE 108


>gi|331006551|ref|ZP_08329844.1| Signal transduction histidine kinase [gamma proteobacterium
           IMCC1989]
 gi|330419643|gb|EGG94016.1| Signal transduction histidine kinase [gamma proteobacterium
           IMCC1989]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 14/89 (15%)

Query: 3   IRKLSEKIINQIAAGEII---ERPSI---AIKELIENSLDA-----ESSRVETVIA-GGG 50
           I  L +  INQ  + +II     P      I  +I+N++DA     ++ ++   +     
Sbjct: 557 IH-LDDSGINQANSNDIIYVETNPLKLDLVISNIIKNAMDAAEKSDKA-KITVAVETNAQ 614

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           K++  I+DNG G+  + +      + T+K
Sbjct: 615 KAYVHISDNGGGIDPKIMSKLFSPYFTTK 643


>gi|310639477|ref|YP_003944235.1| DNA gyrase subunit b [Paenibacillus polymyxa SC2]
 gi|309244427|gb|ADO53994.1| DNA gyrase subunit B [Paenibacillus polymyxa SC2]
          Length = 636

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE 67
          E+++NS+D   A   + ++ V+     +   +TDNG G+   E
Sbjct: 44 EVVDNSIDEALAGYCNSIQVVVHKD--NSITVTDNGRGIPVSE 84


>gi|308068862|ref|YP_003870467.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858141|gb|ADM69929.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 457

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 22  RPSIAIKELIENSL------DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           R    +  L++N++      D     +E  +    G     I+D+G G+  +E+P   +R
Sbjct: 351 RLEQVLLNLLDNAIRYTTEGD-----IELTLQQENGFGVIMISDSGPGIPPDELPYIFER 405

Query: 75  HC 76
             
Sbjct: 406 FY 407


>gi|163761360|ref|ZP_02168434.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Hoeflea phototrophica DFL-43]
 gi|162281355|gb|EDQ31652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Hoeflea phototrophica DFL-43]
          Length = 991

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 23/51 (45%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          E I     AI EL +NS DA +  V   I         I D+G GM  EE+
Sbjct: 19 EQIADVPTAISELWKNSYDAYARSVSLTIFDEDPLVVTIADDGHGMNIEEL 69


>gi|19909539|dbj|BAB86965.1| DNA gyrase subunit B [Caulobacter fusiformis]
          Length = 474

 Score = 43.9 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++   G +   ++D+G G+ ++
Sbjct: 11 VYEVVDNAIDEALAGWATRVEVILNADGSA--TVSDDGRGIPTD 52


>gi|330973157|gb|EGH73223.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 801

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A   +  F+++D+G G+ +
Sbjct: 650 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADQNEVLFRVSDDGIGIPA 707

Query: 66  EEIPMAVQRHCTSK 79
           E +P   QR+ + K
Sbjct: 708 EHLPFIFQRYWSVK 721


>gi|310825640|ref|YP_003957997.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
 gi|308737374|gb|ADO35034.1| hypothetical protein ELI_0009 [Eubacterium limosum KIST612]
          Length = 640

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I    G     + D+G G+ ++
Sbjct: 46 VYEVVDNSIDEALAGYCKNIVVTIDKNNG---ITVVDDGRGIPTD 87


>gi|296156680|ref|ZP_06839518.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. Ch1-1]
 gi|295893279|gb|EFG73059.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. Ch1-1]
          Length = 472

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   +   G ++  Q+ DNG G+ + E     +R   S
Sbjct: 372 LIDNAIRYSGD-GA-VITVRVAREGAQALLQVIDNGPGIAAGEREAVFERFYRS 423


>gi|283787161|ref|YP_003367026.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168]
 gi|282950615|emb|CBG90287.1| topoisomerase IV subunit B [Citrobacter rodentium ICC168]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +       +F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDESFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 S +        N    E ++ +
Sbjct: 203 KDLVNNSEQRWCYQDGLNDYLGEAVNGL 230


>gi|150010060|ref|YP_001304803.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938484|gb|ABR45181.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAE----SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A     S ++    +   G     + DNG G+  E I        T+K
Sbjct: 235 LLKNAIEACEESLSPQIIVEAVQKNGMVIISVIDNGSGIVPEAIDKIFVPFFTTK 289


>gi|124008106|ref|ZP_01692804.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
 gi|123986354|gb|EAY26167.1| DNA gyrase, B subunit [Microscilla marina ATCC 23134]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   +     +   +TDNG G+ 
Sbjct: 55 EVVDNSIDEALAGYCDHITVEV--NTDNSITVTDNGRGIP 92


>gi|66045621|ref|YP_235462.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae B728a]
 gi|63256328|gb|AAY37424.1| Phytochrome:GAF:ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae B728a]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A   +  F+++D+G G+ +
Sbjct: 650 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADQNEVLFRVSDDGIGIPA 707

Query: 66  EEIPMAVQRHCTSK 79
           E +P   QR+ + K
Sbjct: 708 EHLPFIFQRYWSVK 721


>gi|89095093|ref|ZP_01168020.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
 gi|89080654|gb|EAR59899.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
          Length = 681

 Score = 43.9 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI+N+LDA    +  ++   +     K    + D+G G+  + +P   +   
Sbjct: 575 RLEQVLLNLIKNALDAMQGFDHKQIAIQVDAVDDKVRVTVVDSGPGIDMDLLPDLFEPFV 634

Query: 77  TSK-ISDDF 84
           TSK I D  
Sbjct: 635 TSKSIGDGL 643


>gi|304405823|ref|ZP_07387481.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304345066|gb|EFM10902.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 435

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 42  VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRG 94
           +E   +  G +F  +I DNG G+  EE+P   +R   S  + D  +    GFRG
Sbjct: 347 IEVRHSQEGANFVVEIEDNGVGIEEEELPYIFERFYRSS-NTDRHS----GFRG 395


>gi|302761372|ref|XP_002964108.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
 gi|300167837|gb|EFJ34441.1| hypothetical protein SELMODRAFT_405784 [Selaginella moellendorffii]
          Length = 723

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A  +++V+ V+   G     ITDNG G+ ++
Sbjct: 122 EVLDNAIDEVQAGFATQVDVVLHSDG--SVSITDNGRGIPTD 161


>gi|302820792|ref|XP_002992062.1| hypothetical protein SELMODRAFT_162108 [Selaginella
          moellendorffii]
 gi|300140184|gb|EFJ06911.1| hypothetical protein SELMODRAFT_162108 [Selaginella
          moellendorffii]
          Length = 618

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +++V+ V+   G     ITDNG G+ ++
Sbjct: 17 EVLDNAIDEVQAGFATQVDVVLHSDG--SVSITDNGRGIPTD 56


>gi|227506183|ref|ZP_03936232.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940]
 gi|227197207|gb|EEI77255.1| DNA gyrase subunit B [Corynebacterium striatum ATCC 6940]
          Length = 684

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 15/54 (27%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          E+++NS+D   A  +++V   + A GG    ++ D+G G+        V+ H T
Sbjct: 43 EVVDNSVDEAMAGYATKVVVKLLADGG---VEVIDDGRGIP-------VEMHAT 86


>gi|223038508|ref|ZP_03608802.1| DNA gyrase, B subunit [Campylobacter rectus RM3267]
 gi|222880365|gb|EEF15452.1| DNA gyrase, B subunit [Campylobacter rectus RM3267]
          Length = 769

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 13/57 (22%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          E+++NS+D   A     ++  +   G +    +DNG G+  +        H T KIS
Sbjct: 41 EVVDNSIDEAMAGYCDTIDIELTREGSAII--SDNGRGIPVD-------MHPTEKIS 88


>gi|207722628|ref|YP_002253064.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206587810|emb|CAQ18392.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum MolK2]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           R    +  LI N++DA +          RV   +         + D G G+  + +    
Sbjct: 520 RLEQVLVNLIRNAIDATAEVPQPEAAGVRVTVDVGDA-LVCITVRDAGPGIAPQVLQHLF 578

Query: 73  QRHCTSK 79
           +   T+K
Sbjct: 579 EPFFTTK 585


>gi|209550840|ref|YP_002282757.1| CheA signal transduction histidine kinase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536596|gb|ACI56531.1| CheA signal transduction histidine kinase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 679

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLD-----------AE---SSRVETVIAG-GGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D           A    +  V       GG+    I D+G G
Sbjct: 391 TVIERLADPLVHLVRNSIDHGLEMPADRLAAGKTQAGTVTLSARQAGGEVIISIKDDGRG 450

Query: 63  MTSE 66
           +  E
Sbjct: 451 INRE 454


>gi|2564745|gb|AAB96631.1| histidine kinase sensory protein ExoS [Sinorhizobium meliloti]
          Length = 577

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 17  GEIIERPSIAIKELIENSLDAES------SRVETVIAGGGKSFFQ-ITDNGFGMTSEEIP 69
           G+II         LIEN   A S       R+   +          + DNG G+ +E+I 
Sbjct: 463 GQIITN-------LIEN---ARSFVPEQNGRIVVRLTRSRLRCIVYVEDNGPGIQAEDID 512

Query: 70  MAVQRHCT 77
              +R  T
Sbjct: 513 RIFERFYT 520


>gi|15963796|ref|NP_384149.1| histidine kinase sensory transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15072971|emb|CAC41430.1| Signal transduction histidine kinase, regulator of succinoglycan
           synthesis [Sinorhizobium meliloti 1021]
          Length = 595

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 17  GEIIERPSIAIKELIENSLDAES------SRVETVIAGGGKSFFQ-ITDNGFGMTSEEIP 69
           G+II         LIEN   A S       R+   +          + DNG G+ +E+I 
Sbjct: 481 GQIITN-------LIEN---ARSFVPEQNGRIVVRLTRSRLRCIVYVEDNGPGIQAEDID 530

Query: 70  MAVQRHCT 77
              +R  T
Sbjct: 531 RIFERFYT 538


>gi|17380455|sp|P72292|CHVG_RHIME RecName: Full=Sensor protein ChvG; AltName: Full=Histidine kinase
           sensory protein ExoS
          Length = 577

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 17  GEIIERPSIAIKELIENSLDAES------SRVETVIAGGGKSFFQ-ITDNGFGMTSEEIP 69
           G+II         LIEN   A S       R+   +          + DNG G+ +E+I 
Sbjct: 463 GQIITN-------LIEN---ARSFVPEQNGRIVVRLTRSRLRCIVYVEDNGPGIQAEDID 512

Query: 70  MAVQRHCT 77
              +R  T
Sbjct: 513 RIFERFYT 520


>gi|292655722|ref|YP_003535619.1| DNA gyrase subunit B [Haloferax volcanii DS2]
 gi|302425107|sp|D4GZ01|GYRB_HALVD RecName: Full=DNA gyrase subunit B
 gi|291372625|gb|ADE04852.1| DNA gyrase subunit B [Haloferax volcanii DS2]
          Length = 639

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  +   G     +TDNG G+  +
Sbjct: 41 VYEVVDNSIDEALAGHCDAIEVALHEDG--SVSVTDNGRGIPVD 82


>gi|257054095|ref|YP_003131927.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017]
 gi|256583967|gb|ACU95100.1| DNA gyrase subunit B [Saccharomonospora viridis DSM 43017]
          Length = 654

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 24/93 (25%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP---------MAV 72
           I+E+++NS+D   A  +SRVE  + A GG    ++ D+G G+  E  P         +  
Sbjct: 42  IQEVVDNSVDEAMAGYASRVEVTLLADGG---VRVVDDGRGIPVEPHPVHGKPTVEIVLT 98

Query: 73  QRHCTSKISDDFSNIHTFGFRG------EALPS 99
           Q H   K   D   + + G  G       AL S
Sbjct: 99  QLHAGGKFDSDSYAV-SGGLHGVGVSVVNALSS 130


>gi|297588052|ref|ZP_06946696.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
           ATCC 53516]
 gi|297574741|gb|EFH93461.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Finegoldia magna
           ATCC 53516]
          Length = 638

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 30/155 (19%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ--------- 73
           + E+++NS+D   A     ++  I     +   + D+G G+  E  P   +         
Sbjct: 41  VYEVVDNSIDEALAGVCDLIKVTIKKD--NSVIVEDDGSGIPVETHPKTGKSTLETVLTV 98

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K S+D    ++ G  G  +  + A+S   L++R  ++    +      K  +   
Sbjct: 99  LHAGGKFSNDAYQ-YSGGLHGVGVSCVNALS-TYLIARVKRDGKMYEQRFEKGKTVTELT 156

Query: 134 V-------------AMNPGTIVEVRDLFFTIPARL 155
           V              M   TI E  +    + A+ 
Sbjct: 157 VIKENVRGTGTTIEFMPDNTIFETLNFDKNVLAKR 191


>gi|163756010|ref|ZP_02163127.1| response regulator receiver domain protein (CheY-like) [Kordia
           algicida OT-1]
 gi|161324181|gb|EDP95513.1| response regulator receiver domain protein (CheY-like) [Kordia
           algicida OT-1]
          Length = 456

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 30  LIENSLDAE-----SSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++ A      + R+E  +    K   F  + DNG G+  E +        T+K
Sbjct: 359 LVKNAIQANEGVENA-RIEITVGKDTKRNPFIAVKDNGKGIVPEAVDKIFMPFFTTK 414


>gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 591

 Score = 43.9 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           +R    +  L++N+L   +  S  V+        +   + D G G+  +++P   +R   
Sbjct: 484 DRIEQVLTNLVDNALRHTEEGSVTVKVE-QEPTFAKISVQDTGHGIPQDDLPYVFERFY- 541

Query: 78  SKISDDFSNIHTFGFRGEALPSIG 101
                D +   + G  G  L  I 
Sbjct: 542 ---KADKARTRSKGGTGLGLA-IA 561


>gi|332868993|ref|ZP_08438552.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013113]
 gi|332733036|gb|EGJ64238.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013113]
          Length = 604

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 7  RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 53


>gi|301619125|ref|XP_002938954.1| PREDICTED: structural maintenance of chromosomes flexible hinge
           domain-containing protein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 1989

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 29  ELIENSLDAES-----SRVETVI---AGGGKSFFQITDNGFGMTSEEIP 69
           ELI+NSL A +       ++  +      GK    +TDNG GM S ++ 
Sbjct: 139 ELIDNSLSASAQNSGIRNIQIKLLFDEAQGKPAVVVTDNGKGMNSTQLK 187


>gi|301510004|ref|ZP_07235241.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB058]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
            DSM 2522]
 gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
            DSM 2522]
          Length = 1098

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 41   RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
             +  V+    +   +I DNG G+   ++P   +R 
Sbjct: 1013 WINVVVKDRQEVMIEIKDNGHGIKESDLPFVFERF 1047


>gi|260557877|ref|ZP_05830090.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC
          19606]
 gi|260408668|gb|EEX01973.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii ATCC
          19606]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|260550166|ref|ZP_05824379.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624]
 gi|260406694|gb|EEX00174.1| topoisomerase IV subunit B [Acinetobacter sp. RUH2624]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|239502848|ref|ZP_04662158.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB900]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|222480568|ref|YP_002566805.1| histidine kinase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453470|gb|ACM57735.1| histidine kinase [Halorubrum lacusprofundi ATCC 49239]
          Length = 391

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R + A++EL  N+ +  ++ VE       GG     +TD+G G+   E  +   R
Sbjct: 281 DRLATAVEELATNAPEHGATAVELSARAVDGGVE-IAVTDDGPGIHESESRVITGR 335


>gi|193078690|gb|ABO13748.2| topoisomerase IV subunit B [Acinetobacter baumannii ATCC 17978]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|184159873|ref|YP_001848212.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ACICU]
 gi|183211467|gb|ACC58865.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter
          baumannii ACICU]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|169634797|ref|YP_001708533.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii SDF]
 gi|169153589|emb|CAP02766.1| topoisomerase IV subunit B [Acinetobacter baumannii]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|169794326|ref|YP_001712119.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AYE]
 gi|213159099|ref|YP_002321097.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057]
 gi|215481883|ref|YP_002324065.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii
          AB307-0294]
 gi|301345700|ref|ZP_07226441.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB056]
 gi|301596077|ref|ZP_07241085.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii AB059]
 gi|332850131|ref|ZP_08432518.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013150]
 gi|332872976|ref|ZP_08440937.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6014059]
 gi|169147253|emb|CAM85112.1| topoisomerase IV subunit B [Acinetobacter baumannii AYE]
 gi|213058259|gb|ACJ43161.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii AB0057]
 gi|213985902|gb|ACJ56201.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii
          AB307-0294]
 gi|322509788|gb|ADX05242.1| Topoisomerase IV subunit B [Acinetobacter baumannii 1656-2]
 gi|323519801|gb|ADX94182.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii
          TCDC-AB0715]
 gi|332730980|gb|EGJ62286.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6013150]
 gi|332738820|gb|EGJ69686.1| DNA topoisomerase IV, B subunit [Acinetobacter baumannii 6014059]
          Length = 627

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 30 RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 76


>gi|167623376|ref|YP_001673670.1| PAS/PAC sensor-containing signal transduction histidine kinase
           [Shewanella halifaxensis HAW-EB4]
 gi|167353398|gb|ABZ76011.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           halifaxensis HAW-EB4]
          Length = 374

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
              AI  L+ NS++A ++++         +    + DNG G+ +      ++   T+K
Sbjct: 261 LCSAINNLVMNSIEAGANQITLRAFDTQTALHLDVIDNGKGLDAAMQKKVLEPFFTTK 318


>gi|163256309|dbj|BAF95665.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3E]
          Length = 286

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 3  VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 44


>gi|163256301|dbj|BAF95661.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3A]
          Length = 270

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 1  VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 42


>gi|126643366|ref|YP_001086350.1| DNA topoisomerase IV subunit B [Acinetobacter baumannii ATCC
          17978]
          Length = 605

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+N++D   A  + ++   +   G     + DNG GM  +
Sbjct: 7  RPNHLAQEVIDNAVDEALAGHADKICVTVYKDG--SLSVEDNGRGMPVD 53


>gi|18916423|dbj|BAB85505.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916426|dbj|BAB85506.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 53


>gi|18916447|dbj|BAB85513.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 374

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 53


>gi|18916429|dbj|BAB85507.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916444|dbj|BAB85512.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916451|dbj|BAB85514.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916455|dbj|BAB85515.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916458|dbj|BAB85516.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|18916462|dbj|BAB85517.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|19979605|dbj|BAB88758.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979607|dbj|BAB88759.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 53


>gi|27375934|ref|NP_767463.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27349072|dbj|BAC46088.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 811

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 96


>gi|18916466|dbj|BAB85518.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 53


>gi|19979609|dbj|BAB88760.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979611|dbj|BAB88761.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score = 43.9 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 53


>gi|302388284|ref|YP_003824106.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302198912|gb|ADL06483.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 509

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+ ++++P    R  
Sbjct: 418 INIRIKDVG-DFIQVEIEDNGKGIPAKDLPNIFDRFY 453


>gi|257463167|ref|ZP_05627567.1| hypothetical protein FuD12_04881 [Fusobacterium sp. D12]
          Length = 54

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 488 ERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSST 525
           E FG N I IR +PA+  K ++ +++R+++ ++     
Sbjct: 4   EDFGGNEILIRSVPAVEFKASMEEIIREMLQQLSHEKR 41


>gi|253573811|ref|ZP_04851154.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251847339|gb|EES75344.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 17  GEIIER---PSIAIKELIENSLD-AESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPM 70
            E++      +  +++L+ N++  +E+S +     I+  G+++  + D G G+ ++++P 
Sbjct: 212 QEVLSDAKWLAFIVRQLLTNAVKYSEASDICVESGISPEGQAWLSVRDKGRGIDAKDLPR 271

Query: 71  AVQRHCTS 78
             ++  TS
Sbjct: 272 IFEKGFTS 279


>gi|239927005|ref|ZP_04683958.1| heat shock protein 90 [Streptomyces ghanaensis ATCC 14672]
 gi|291435353|ref|ZP_06574743.1| heat shock protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338248|gb|EFE65204.1| heat shock protein [Streptomyces ghanaensis ATCC 14672]
          Length = 632

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 43/184 (23%)

Query: 27  IKELIEN----------------SLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N                SLDA+ S +   +   G      + DNG GM+ +E+ 
Sbjct: 31  LRELVSNASDALDKLRLAALRDDSLDADVSDLHIELEIDGDARTLTVRDNGIGMSYDEVG 90

Query: 70  MAVQRHCTSKISDDFSNIH---------------TFGFRGEALPSIGAVSH-LTLMSRPP 113
             +     S  ++    +                  GF      S   V+  +T+++R  
Sbjct: 91  QLIGTIANSGTAEFLRELREAQDAAGAEGLIGQFGVGF-----YSAFMVADEVTVLTRRA 145

Query: 114 QNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
               G + +  GE   ++  V     GT V         PA  +    +      I +++
Sbjct: 146 GEEQGTRWSSRGEGTYTLERVDDAPQGTSVT----LHLKPADPDNQLHDYTSVWKIKEIV 201

Query: 173 RRMA 176
           +R +
Sbjct: 202 KRYS 205


>gi|226305434|ref|YP_002765392.1| two-component histidine kinase [Rhodococcus erythropolis PR4]
 gi|226184549|dbj|BAH32653.1| probable two-component histidine kinase [Rhodococcus erythropolis
           PR4]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 26  AIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  L+ N+L   +  V   ++   G S   + D+G G++ E+     +R  
Sbjct: 365 VVANLVGNALRHGAPPVRVELSAEPGFSVITVVDHGPGISPEDRQAIFRRFY 416


>gi|219685160|ref|ZP_03539980.1| DNA gyrase, B subunit [Borrelia garinii Far04]
 gi|219673256|gb|EED30275.1| DNA gyrase, B subunit [Borrelia garinii Far04]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    +++ VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIDVVINLD--NTITVIDNGRGIPTD 78


>gi|224531788|ref|ZP_03672420.1| DNA gyrase, B subunit [Borrelia valaisiana VS116]
 gi|224511253|gb|EEF81659.1| DNA gyrase, B subunit [Borrelia valaisiana VS116]
          Length = 634

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    +++ VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIDVVINLD--NTITVIDNGRGIPTD 78


>gi|160883584|ref|ZP_02064587.1| hypothetical protein BACOVA_01556 [Bacteroides ovatus ATCC 8483]
 gi|156110997|gb|EDO12742.1| hypothetical protein BACOVA_01556 [Bacteroides ovatus ATCC 8483]
          Length = 857

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 13/57 (22%)

Query: 26 AIKELIENSLDAESSRVET-----------VIAGGG--KSFFQITDNGFGMTSEEIP 69
          AI EL++N+ DA + R +             I       S   I DNG GM   +I 
Sbjct: 26 AILELVKNAFDANAKRTDISFVNLKNNDDLSIEKYSSRTSRLIIRDNGVGMDINDIK 82


>gi|124485239|ref|YP_001029855.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
 gi|124362780|gb|ABN06588.1| DNA gyrase subunit B [Methanocorpusculum labreanum Z]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +  +I   G     + D+G G+  +
Sbjct: 39 VYEVVDNSIDEALAGFCKHIVIIINPNG--SVSVEDDGRGIPVD 80


>gi|94264231|ref|ZP_01288026.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
 gi|93455342|gb|EAT05546.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
          Length = 804

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E     + E+++NS+D   A   SR+   +   G     + DNG G+ 
Sbjct: 42 EGLHHLVYEVVDNSIDEALAGHCSRIAVTLHKDG--SVSVEDNGRGIP 87


>gi|31071477|dbj|BAC76787.1| DNA gyrase B subunit [Fischerella major NIES-592]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + VE  +   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDLNADG--SVTVTDDGRGIP 49


>gi|31071481|dbj|BAC76789.1| DNA gyrase B subunit [Hapalosiphon sp. IAM M-264]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + VE  +   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDLNADG--SVTVTDDGRGIP 49


>gi|31071483|dbj|BAC76790.1| DNA gyrase B subunit [Hapalosiphon delicatulus]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + VE  +   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSIDXALAGYCTHVEVDLNADG--SVTVTDDGRGIP 49


>gi|23978263|dbj|BAC21120.1| DNA gyrase B subunit [Fischerella muscicola]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + VE  +   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSIDEALAGYCTHVEVDLNADG--SVTVTDDGRGIP 49


>gi|312865887|ref|ZP_07726108.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus downei F0415]
 gi|311098291|gb|EFQ56514.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus downei F0415]
          Length = 457

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L +N++    D  +  +   +A   +    ++ DNG G++ E+      R  
Sbjct: 359 LFDNAVKYTGDDGA--ISIDVASSDRKLVIRVADNGSGISEEDKTKIFDRFY 408


>gi|218889474|ref|YP_002438338.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218769697|emb|CAW25457.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDAE-------SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+++A         SRV     +  GG     + D G G+ ++++        TSK
Sbjct: 653 LLRNAIEANREAHPGSPSRVVIGSRVEPGGLLCLWVRDQGPGVPADQLEHIFTPFYTSK 711


>gi|241574635|ref|XP_002403392.1| two component histidine kinase, putative [Ixodes scapularis]
 gi|215500214|gb|EEC09708.1| two component histidine kinase, putative [Ixodes scapularis]
          Length = 444

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 16/88 (18%)

Query: 22  RPSIAIKELIENSLDA--ESS--RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA   S   R+   + +        ++DNG G++ E          
Sbjct: 332 RLEQVLVNLLRNALDALEGSRQGRIRIEVMSEQQHVRIVVSDNGPGLSPEIRQRLFTPFS 391

Query: 77  TSK---------ISDDFSNIHTFGFRGE 95
           +S+         IS D   +   G R E
Sbjct: 392 SSRRQGVGLGLVISHDI--VAALGGRLE 417


>gi|192360165|ref|YP_001983359.1| DNA topoisomerase IV subunit B [Cellvibrio japonicus Ueda107]
 gi|190686330|gb|ACE84008.1| DNA topoisomerase IV, B subunit [Cellvibrio japonicus Ueda107]
          Length = 629

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  +E ++     +   + D+G GM  +
Sbjct: 29 TRPNHLAQEIIDNSVDEALAGHAKSIEVILHKD--NSVTVADDGRGMPVD 76


>gi|218778881|ref|YP_002430199.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760265|gb|ACL02731.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 36  DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           DA    +   +    G +  ++ DNG GM  +      +   T+K
Sbjct: 558 DAGIKEIILRVRPEPGFARIEVQDNGPGMHEDIRKRIFEPFYTTK 602


>gi|52787889|ref|YP_093718.1| YtsB [Bacillus licheniformis ATCC 14580]
 gi|163119724|ref|YP_081284.2| histidine kinase, homodimeric [Bacillus licheniformis ATCC 14580]
 gi|319648371|ref|ZP_08002587.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52350391|gb|AAU43025.1| YtsB [Bacillus licheniformis ATCC 14580]
 gi|145903235|gb|AAU25646.2| Histidine kinase, homodimeric [Bacillus licheniformis ATCC 14580]
 gi|317389450|gb|EFV70261.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 334

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           Q+ AGE++      S  I++L+ N++  +E+S V        GK    + D G G+  ++
Sbjct: 208 QLEAGEVLSDAKWLSFIIRQLLTNAVKYSEASDVLIKSYEQDGKVHLAVQDFGRGIDPKD 267

Query: 68  IPMAVQRHCTS 78
           +P    +  TS
Sbjct: 268 MPRVFDKGFTS 278


>gi|19909659|dbj|BAB87025.1| DNA gyrase subunit B [Listonella pelagia]
          Length = 464

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I     +   + D+G G+      EE   A +      H
Sbjct: 10  EVVDNSIDEALAGHCNDIIVTIHDD--NSVSVRDDGRGIPTEMHPEEQVSAAEVIMTVLH 67

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 68  AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIG 126

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+      + +   +++   +R ++     VS      +    K
Sbjct: 127 ETDKTGTEIRF----WPSE-ETFSNTEFHYDILAKRLRELSFLNSGVSIKLR-DEREEDK 180

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +  +             +N G     Y F N
Sbjct: 181 GDHFMFEGGIQAFVEHLNTNKTPIIQKIFHFDNERDDGITVEFAMQWNDGYQENIYCFTN 240

Query: 256 GRTVQD 261
               +D
Sbjct: 241 NIPQRD 246


>gi|83951580|ref|ZP_00960312.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius nubinhibens ISM]
 gi|83836586|gb|EAP75883.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius nubinhibens ISM]
          Length = 567

 Score = 43.9 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 10/60 (16%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ N+LDA  +R      ++ ++A G  +   + DNG G++  +I    +   T+K   D
Sbjct: 465 LLRNALDA--TRGVEEAQIDLLLAAGETATLTVRDNGHGLS--DIDNLFEPFYTTKAPGD 520


>gi|215433471|gb|ACJ66701.1| GyrB [Myxococcus fulvus HW-1]
          Length = 815

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 16/70 (22%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---------SEEIPMAV- 72
           + E+++N++D   A   + +E VI   G     + DNG G+           + + + + 
Sbjct: 52  VYEVVDNAVDESLAGHCTDIEVVIHVDG--SLSVQDNGRGIPVGPHPKFPGKDTLEVVLT 109

Query: 73  QRHCTSKISD 82
           + H  SK  +
Sbjct: 110 ELHAGSKFGN 119


>gi|111017309|ref|YP_700281.1| signal transduction histidine kinase in 2 component regulatory
           system [Rhodococcus jostii RHA1]
 gi|110816839|gb|ABG92123.1| probable signal transduction histidine kinase in 2 component
           regulatory system [Rhodococcus jostii RHA1]
          Length = 425

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC---T 77
              A +EL+ N +  A++  V   +A  G  +   +TD+G G++ E I  ++ R     T
Sbjct: 321 LFSAARELLSNVVKHAQAGTVRVELARWGEHAVLDVTDDGCGISREAIDRSLSRGHIGLT 380

Query: 78  S 78
           S
Sbjct: 381 S 381


>gi|110798968|ref|YP_695940.1| ATPase domain-containing protein [Clostridium perfringens ATCC
           13124]
 gi|110673615|gb|ABG82602.1| ATPase domain protein [Clostridium perfringens ATCC 13124]
          Length = 945

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 18/59 (30%)

Query: 22  RPSIAIKELIENSLDAESSRVE--------------TVIAGGGKSFFQITDNGFGMTSE 66
            P+  I+EL++NS+DA    +E                I+   + +  + DNG GM  +
Sbjct: 395 NPAYGIRELLQNSIDA---CIEKERVYCDKYEPKVIITISDD-QEYIIVEDNGIGMNKD 449


>gi|108758234|ref|YP_628545.1| DNA gyrase subunit B [Myxococcus xanthus DK 1622]
 gi|108462114|gb|ABF87299.1| DNA gyrase, B subunit [Myxococcus xanthus DK 1622]
          Length = 815

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 16/70 (22%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---------SEEIPMAV- 72
           + E+++N++D   A   + +E VI   G     + DNG G+           + + + + 
Sbjct: 52  VYEVVDNAVDESLAGHCTDIEVVIHVDG--SLSVQDNGRGIPVGPHPKFPGKDTLEVVLT 109

Query: 73  QRHCTSKISD 82
           + H  SK  +
Sbjct: 110 ELHAGSKFGN 119


>gi|78224572|ref|YP_386319.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195827|gb|ABB33594.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 470

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 30  LIENSLD---AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A    V  V+   GG +   + D+G G+ ++++P   +R  
Sbjct: 368 LLDNAVTYTPAG-GEVSVVLDASGGFARVTVIDSGVGIPADDLPHIFERFY 417


>gi|4033395|sp|O33367|GYRB_MYXXA RecName: Full=DNA gyrase subunit B
 gi|2578422|emb|CAA04176.1| DNA gyrase B subunit [Myxococcus xanthus]
          Length = 815

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 16/70 (22%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---------SEEIPMAV- 72
           + E+++N++D   A   + +E VI   G     + DNG G+           + + + + 
Sbjct: 52  VYEVVDNAVDESLAGHCTDIEVVIHVDG--SLSVQDNGRGIPVGPHPKFPGKDTLEVVLT 109

Query: 73  QRHCTSKISD 82
           + H  SK  +
Sbjct: 110 ELHAGSKFGN 119


>gi|19909653|dbj|BAB87022.1| DNA gyrase subunit B [Vibrio diazotrophicus]
          Length = 467

 Score = 43.9 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           E+++NS+D   A     +   I     +   ++D+G G+       E +  A       H
Sbjct: 13  EVVDNSIDEALAGHCKDIIVTIHED--NSVSVSDDGRGIPTELHEEENVSAAEVIMTVLH 70

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++     +   Q    G   + +  V 
Sbjct: 71  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRGGHIHTQTYRHGVPQAPLSVVG 129

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   VR  +       +   + +   +++   +R ++     VS      +    +
Sbjct: 130 DTEKTGTTVR-FW----PSADTFTNIEFHYDILAKRLRELSFLNSGVSIKLIDEREEDKQ 184

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     ++ +       +    +  S             +N G     Y F N
Sbjct: 185 DHFMYEGG-IQAFVTHLNRNKTPIHEKVFHFNSEREDGISVEVAMQWNDGFQEGIYCFTN 243

Query: 256 GRTVQD 261
               +D
Sbjct: 244 NIPQRD 249


>gi|322831363|ref|YP_004211390.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602]
 gi|321166564|gb|ADW72263.1| DNA topoisomerase IV, B subunit [Rahnella sp. Y9602]
          Length = 631

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 15/75 (20%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R+E ++        ++ D+G GM     +EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAKRIEVILHED--QSLEVIDDGRGMPVDIHAEEGVPAV 88

Query: 69  PMAVQR-HCTSKISD 82
            +   R H   K S+
Sbjct: 89  ELIFCRLHAGGKFSN 103


>gi|307727554|ref|YP_003910767.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1003]
 gi|307588079|gb|ADN61476.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1003]
          Length = 474

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   +A   G    Q+ DNG G+ + E     +R   S
Sbjct: 372 LIDNAIRYSGD-GA-VITVRVACEHGAPLLQVIDNGPGIAASERDAVFERFYRS 423


>gi|256855120|ref|ZP_05560481.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256709633|gb|EEU24680.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|315028794|gb|EFT40726.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4000]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 30  LIENSLDAE--SSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           L++N + A   ++ +   I         +I DNG G++SE++P   +   T
Sbjct: 211 LVQNII-AHSHATEISLTIKKQSNMLTIRIKDNGVGISSEDLPHIFENLYT 260


>gi|219856476|ref|YP_002473598.1| hypothetical protein CKR_3133 [Clostridium kluyveri NBRC 12016]
 gi|219570200|dbj|BAH08184.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 349

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R 
Sbjct: 243 IEAISNIVK----NAFDHTQKGNTIHIEWKQF-ASVIQVIIKDNGGGIHPEDLHHIFKRF 297

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 298 YRSRFSKDTQGIG 310


>gi|163760282|ref|ZP_02167365.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43]
 gi|162282681|gb|EDQ32969.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43]
          Length = 697

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+NS+D   A  ++ +E  +   G  +  ++DNG G+  E  P 
Sbjct: 95  EVIDNSMDEAVAGHANFIEVELDAEG--YLTVSDNGRGIPVENHPK 138


>gi|146305639|ref|YP_001186104.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp]
 gi|145573840|gb|ABP83372.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina ymp]
          Length = 632

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  ++ ++     +  ++ D+G GM  +
Sbjct: 32 TRPNHLAQEVIDNSVDEALAGHAKSIQVILHED--NSLEVIDDGRGMPVD 79


>gi|94266205|ref|ZP_01289914.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
 gi|93453212|gb|EAT03670.1| DNA gyrase, B subunit [delta proteobacterium MLMS-1]
          Length = 804

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E     + E+++NS+D   A   SR+   +   G     + DNG G+ 
Sbjct: 42 EGLHHLVYEVVDNSIDEALAGHCSRIAVTLHKDG--SVSVEDNGRGIP 87


>gi|15605780|ref|NP_213157.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
 gi|2982944|gb|AAC06560.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
          Length = 339

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
            +  L+ N++   D    +V   +   G+     + D G G+  EE+        
Sbjct: 240 VVLNLVLNAIQASDRG-KKVRVFLKKEGEELILIVEDEGKGIPPEEVDKIFLPFY 293


>gi|51244501|ref|YP_064385.1| DNA gyrase, subunit B [Desulfotalea psychrophila LSv54]
 gi|50875538|emb|CAG35378.1| probable DNA gyrase, subunit B [Desulfotalea psychrophila LSv54]
          Length = 807

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          IE     I E+++NS+D   A     ++  I  G K    + D+G G+  +
Sbjct: 34 IEGLHHLIWEIVDNSIDEALAGHCQLIKVTIHEGNK--VTVEDDGRGIPVD 82


>gi|127512294|ref|YP_001093491.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           loihica PV-4]
 gi|126637589|gb|ABO23232.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           loihica PV-4]
          Length = 362

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A +S++        G   F++ DNG G+ ++     ++   T+K
Sbjct: 253 LSSAINNLVMNSIEAGASQIWLNAQDETGTVAFEVVDNGKGLDAKLQEKVLEPFFTTK 310


>gi|107025538|ref|YP_623049.1| multi-sensor signal transduction histidine kinase [Burkholderia
           cenocepacia AU 1054]
 gi|116693280|ref|YP_838813.1| multi-sensor signal transduction histidine kinase [Burkholderia
           cenocepacia HI2424]
 gi|170737449|ref|YP_001778709.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           cenocepacia MC0-3]
 gi|105894912|gb|ABF78076.1| multi-sensor signal transduction histidine kinase [Burkholderia
           cenocepacia AU 1054]
 gi|116651280|gb|ABK11920.1| multi-sensor signal transduction histidine kinase [Burkholderia
           cenocepacia HI2424]
 gi|169819637|gb|ACA94219.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           cenocepacia MC0-3]
          Length = 632

 Score = 43.9 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 25  IAIKELIENSLDAES------SRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             +  L+ N++ A +       R+   +    G K+   I D+G G++  +  M      
Sbjct: 523 QVVINLLMNAIQAMAVVTDRTRRLSVSVQRYEGDKTLIAIEDSGHGISEADASMLFTPFF 582

Query: 77  TSK 79
           T+K
Sbjct: 583 TTK 585


>gi|301057344|ref|ZP_07198462.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300448574|gb|EFK12221.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 649

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 41  RVETVIA----GGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFG 91
           ++E         GG      +I DNG G+    +      + T+K      +    G
Sbjct: 544 KIEISTKMVTLAGGLQNILIEIKDNGAGIPESSLDKVFDPYFTTKHKSSLHSGTGLG 600


>gi|267996474|gb|ACY91359.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
          Length = 493

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 385 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 442

Query: 75  HCTSK 79
           + T+K
Sbjct: 443 YFTTK 447


>gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 583

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 22  RPSIAIKELIENSLD---AESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L++N++    A  S     +      G+    + D G G+  +++P   +R 
Sbjct: 477 RLEQVIVNLVDNAVKYTPAGGS---VTLTAAEDDGRVVIAVRDTGIGIPPKDLPRIFERF 533

Query: 76  C 76
            
Sbjct: 534 Y 534


>gi|167749754|ref|ZP_02421881.1| hypothetical protein EUBSIR_00721 [Eubacterium siraeum DSM 15702]
 gi|167657237|gb|EDS01367.1| hypothetical protein EUBSIR_00721 [Eubacterium siraeum DSM 15702]
 gi|291556350|emb|CBL33467.1| Molecular chaperone, HSP90 family [Eubacterium siraeum V10Sc8a]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 36/151 (23%)

Query: 27  IKELIENSLDA------ES--SRVETVIAGGGKSF--------FQITDNGFGMTSEEIP- 69
           ++ELI N+ DA      +S    +       G             ITDNG GMT +E+  
Sbjct: 32  LRELISNASDALDKLYFKSLTENLGIERKDLGIDLAVDKDNRLITITDNGIGMTKDELEN 91

Query: 70  -MAVQRHCTS-KI--------SDDFSNIHTF--GFRGEALPSIGAV-SHLTLMSRPPQNN 116
            + V  +  S K          DD + I  F  GF      S   V S +T+ S+   + 
Sbjct: 92  NLGVIANSGSFKFKNDNTDTEKDDINVIGQFGVGF-----YSAFMVASEVTVESKAYGSE 146

Query: 117 TGAQIAISGEKISSVRPVAM-NPGTIVEVRD 146
              +    G    ++      + GT + ++ 
Sbjct: 147 QAYKWYSQGVDGYTITDCDKEDVGTKITLKI 177


>gi|153956150|ref|YP_001396915.1| sensory transduction histidine kinase [Clostridium kluyveri DSM
           555]
 gi|146349008|gb|EDK35544.1| Predicted sensory transduction histidine kinase [Clostridium
           kluyveri DSM 555]
          Length = 345

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 20  IERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRH 75
           IE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R 
Sbjct: 239 IEAISNIVK----NAFDHTQKGNTIHIEWKQF-ASVIQVIIKDNGGGIHPEDLHHIFKRF 293

Query: 76  CTSKISDDFSNIH 88
             S+ S D   I 
Sbjct: 294 YRSRFSKDTQGIG 306


>gi|148975158|ref|ZP_01812082.1| hypothetical protein VSWAT3_17233 [Vibrionales bacterium SWAT-3]
 gi|145965082|gb|EDK30332.1| hypothetical protein VSWAT3_17233 [Vibrionales bacterium SWAT-3]
          Length = 654

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N+LDA    E  ++              + DNG G+  E+IP       
Sbjct: 546 RLEQVLVNLISNALDAVEHKEQPQLSISTQDQLNTIQISVKDNGLGIPEEDIPYLFDPFY 605

Query: 77  TSK 79
           T K
Sbjct: 606 TRK 608


>gi|94967781|ref|YP_589829.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549831|gb|ABF39755.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 390

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 33  NSLDAESS--RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N++ A +    +   +   G  +   ITDNG G+  + +    +   T+K
Sbjct: 291 NAIQAVAREGHIVVSLENRGDYAAISITDNGPGIPPDTLKNIFRPFFTTK 340


>gi|28627817|gb|AAN75469.1| topoisomerase II subunit B [Streptomyces roseochromogenes subsp.
          oscitans]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A +   +E ++   G    ++TDNG G+  +
Sbjct: 55 EIIDNAVDEALAGACDYIEVILHDDG--SVEVTDNGRGIPVD 94


>gi|83749701|ref|ZP_00946680.1| Transporter [Ralstonia solanacearum UW551]
 gi|207738534|ref|YP_002256927.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|83723626|gb|EAP70825.1| Transporter [Ralstonia solanacearum UW551]
 gi|206591902|emb|CAQ58808.1| c4-dicarboxylate transport sensor kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           R    +  LI N++DA +          RV   +         + D G G+  + +    
Sbjct: 520 RLEQVLVNLIRNAIDATAEVPQPEAAGVRVTVDVGDA-LVCITVRDAGPGIAPQVLSHLF 578

Query: 73  QRHCTSK 79
           +   T+K
Sbjct: 579 EPFFTTK 585


>gi|317180279|dbj|BAJ58065.1| DNA gyrase subunit B [Helicobacter pylori F32]
          Length = 773

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 21/135 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++N++D   A     +   +   G     + DNG G+       E   A       
Sbjct: 38  VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVDIHPTEKIPACTVVLTI 95

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIA-----ISGEKI 128
            H   K  +D   + + G  G  +  + A+S L +M+   +     Q       IS  +I
Sbjct: 96  LHAGGKFDNDTYKV-SGGLHGVGVSVVNALSKLLIMTIKKEGQIYRQEFEKGIPISELEI 154

Query: 129 SSVRPVAMNPGTIVE 143
                 A   GT +E
Sbjct: 155 IGKTKSAKESGTTIE 169


>gi|297810505|ref|XP_002873136.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318973|gb|EFH49395.1| hypothetical protein ARALYDRAFT_487191 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 729

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 16/68 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+V+ V+   G     + DNG G+   ++      H  T K  
Sbjct: 122 VYEILDNAIDEAQAGFASKVDVVLHADG--SVSVVDNGRGI-PTDL------HPATKK-- 170

Query: 82  DDFSNIHT 89
                + T
Sbjct: 171 SSLETVLT 178


>gi|296331986|ref|ZP_06874450.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope (YtsA) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675620|ref|YP_003867292.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150757|gb|EFG91642.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope (YtsA) [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413864|gb|ADM38983.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 334

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           Q+ A E++      +  I++L+ N++  +E+S +E      G ++  Q+ D G G+  ++
Sbjct: 208 QLEAEEVLSDAKWLAFIIRQLLTNAVKYSEASEIEIKSFQKGEQTQLQVKDCGRGIDQKD 267

Query: 68  IPMAVQRHCTS 78
           +P    +  TS
Sbjct: 268 VPRIFDKGFTS 278


>gi|281181374|dbj|BAI57704.1| histidin kinase-like protein [Escherichia coli SE15]
 gi|315288373|gb|EFU47771.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
          protein [Escherichia coli MS 110-3]
 gi|323955562|gb|EGB51326.1| hsp90-like protein [Escherichia coli H263]
          Length = 989

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          E I     AI EL +N+ DA +  V   I  G      + D+G GM+ ++I
Sbjct: 20 EQIADCPTAISELWKNAYDAYARNVSLNIFDGNTPVATLVDDGHGMSLDDI 70


>gi|207859351|ref|YP_002246002.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711154|emb|CAR35528.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRH 75
           R +  +  L  N++ A        +       G       +TD+G G+  +++      +
Sbjct: 358 RLTQVLLNLYLNAIHAIGRQG--TITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPY 415

Query: 76  CTSK 79
            T+K
Sbjct: 416 FTTK 419


>gi|152970274|ref|YP_001335383.1| phosphoglycerate transporter [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238894757|ref|YP_002919491.1| phosphoglycerate transport system sensor protein [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150955123|gb|ABR77153.1| Phosphoglycerate transport: protein for signal transmission
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238547073|dbj|BAH63424.1| phosphoglycerate transport system sensor protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 669

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ESSRVETVIA-GGGKSFFQITDNGF 61
            + +  +  I   E+  R    +  ++ N+LDA   ++++       GG+    I DNG 
Sbjct: 548 VIPDDTVW-IQGDEV--RVHQVLVNVLSNALDACPHAAQITVSWQIQGGRLCVLIADNGP 604

Query: 62  GMTSEEIPMAVQRHCTSK 79
           G  +  +P  ++   TSK
Sbjct: 605 GWPAALLPSLLKPFTTSK 622


>gi|18414465|ref|NP_568133.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
           II, putative / DNA gyrase, putative [Arabidopsis
           thaliana]
 gi|75165162|sp|Q94BZ7|GYRBM_ARATH RecName: Full=DNA gyrase subunit B, mitochondrial; Flags: Precursor
 gi|14517374|gb|AAK62578.1| AT3g10270/F14P13_13 [Arabidopsis thaliana]
 gi|22655426|gb|AAM98305.1| At3g10270/F14P13_13 [Arabidopsis thaliana]
 gi|332003319|gb|AED90702.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 16/68 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+V+ V+   G     + DNG G+   ++      H  T K  
Sbjct: 125 VYEILDNAIDEAQAGYASKVDVVLHADG--SVSVVDNGRGI-PTDL------HPATKK-- 173

Query: 82  DDFSNIHT 89
                + T
Sbjct: 174 SSLETVLT 181


>gi|9955568|emb|CAC05495.1| DNA gyrase subunit B-like protein [Arabidopsis thaliana]
          Length = 760

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 16/68 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+V+ V+   G     + DNG G+   ++      H  T K  
Sbjct: 123 VYEILDNAIDEAQAGYASKVDVVLHADG--SVSVVDNGRGI-PTDL------HPATKK-- 171

Query: 82  DDFSNIHT 89
                + T
Sbjct: 172 SSLETVLT 179


>gi|30680397|ref|NP_850762.1| DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase
           II, putative / DNA gyrase, putative [Arabidopsis
           thaliana]
 gi|332003318|gb|AED90701.1| DNA gyrase subunit B [Arabidopsis thaliana]
          Length = 519

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 16/68 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH-CTSKIS 81
           + E+++N++D   A  +S+V+ V+   G     + DNG G+   ++      H  T K  
Sbjct: 125 VYEILDNAIDEAQAGYASKVDVVLHADG--SVSVVDNGRGI-PTDL------HPATKK-- 173

Query: 82  DDFSNIHT 89
                + T
Sbjct: 174 SSLETVLT 181


>gi|81427621|ref|YP_394618.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609260|emb|CAI54307.1| DNA gyrase, B subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+I+N +D   A  ++ +  V+     +   +TD+G G+ 
Sbjct: 60 EIIDNGIDEALAGFATEINVVVEPD--NSITVTDDGRGIP 97


>gi|323484499|ref|ZP_08089865.1| hypothetical protein HMPREF9474_01616 [Clostridium symbiosum
          WAL-14163]
 gi|323692560|ref|ZP_08106793.1| histidine kinase [Clostridium symbiosum WAL-14673]
 gi|323402277|gb|EGA94609.1| hypothetical protein HMPREF9474_01616 [Clostridium symbiosum
          WAL-14163]
 gi|323503426|gb|EGB19255.1| histidine kinase [Clostridium symbiosum WAL-14673]
          Length = 185

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 32 ENSLDAESSRVETVIA-GGGKSF--FQITDNGFGMTSEEIPMAVQRHCTS 78
          ENS  A +  V   +            I D+G GMT E++        TS
Sbjct: 14 ENSTRAGAGLVRITVDADFSSDRLTISICDDGCGMTKEQVEQVTDPFFTS 63


>gi|323132509|gb|ADX19939.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 554

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           +R +  +  L  N++ A        +       G       +TD+G G+  +++      
Sbjct: 446 DRLTQVLLNLYLNAIHAIGRQG--TISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTP 503

Query: 75  HCTSK 79
           + T+K
Sbjct: 504 YFTTK 508


>gi|319408573|emb|CBI82226.1| topoisomerase protein [Bartonella schoenbuchensis R1]
          Length = 692

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P
Sbjct: 89  EIIDNAMDEAVAGYADLIDVSLDKDG--YLTVTDNGRGIPIENHP 131


>gi|288801769|ref|ZP_06407211.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
 gi|288335811|gb|EFC74244.1| DNA gyrase, B subunit [Prevotella melaninogenica D18]
          Length = 624

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 96/340 (28%), Gaps = 41/340 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 29  LKEVIDNSIDEFKMNAG-DRIEIDVEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 85

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S                +    +  
Sbjct: 86  DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVKSFRDGKVRELSFEKGNLQSDKTKKS 139

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           A   GT +                K+     +++ +++R        ++          +
Sbjct: 140 ADENGTYIYFE-------PDATLFKNYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSR 192

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G           A 
Sbjct: 193 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 252

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
           + ++    +    K+    IR      I +    PV     +I      ++         
Sbjct: 253 KEHIAKTIKEFFGKYEYGDIRNGLVAAIAVNVEEPVFESQTKIKLGSTQMSPDGESI--- 309

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
                 + +FI  ++   ++      + +L  K+  +  +
Sbjct: 310 ---NKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERE 346


>gi|229165515|ref|ZP_04293295.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228617963|gb|EEK75008.1| Sensor histidine kinase [Bacillus cereus AH621]
          Length = 536

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 20  IERPSIAIKELIENSLDAES----SRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQ 73
           I      +  LI+N+LDA +     +VE  I  G        + D G G+  EE+     
Sbjct: 424 IHELITIVGNLIDNALDAVANCKKKQVEVGIQYGDTDTLTITVQDAGKGIQEEEMDALFT 483

Query: 74  RHCTSK 79
           +  ++K
Sbjct: 484 KGYSTK 489


>gi|227506356|ref|ZP_03936405.1| sensor kinase [Corynebacterium striatum ATCC 6940]
 gi|227197007|gb|EEI77055.1| sensor kinase [Corynebacterium striatum ATCC 6940]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVI---AGGGKS----FFQITDNGFGMTSEEIPMAVQ 73
           +R    +  L+ N+L       +  +      G+        + D+G GM  E+     +
Sbjct: 338 DRLHQVLLNLVSNALRHGGEEAKVKLTIREEAGEKGTDVLIDVADDGKGMAPEDASHIFE 397

Query: 74  RHC---TSKISD 82
           R     TS+  D
Sbjct: 398 RFYRADTSRTRD 409


>gi|237703953|ref|ZP_04534434.1| histidine kinase [Escherichia sp. 3_2_53FAA]
 gi|226901865|gb|EEH88124.1| histidine kinase [Escherichia sp. 3_2_53FAA]
          Length = 989

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
          E I     AI EL +N+ DA +  V   I  G      + D+G GM+ ++I
Sbjct: 20 EQIADCPTAISELWKNAYDAYARNVSLNIFDGNTPVATLVDDGHGMSLDDI 70


>gi|220702379|pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
           Geobacillus Stearothermophilus Kinb With The Inhibitor
           Sda
 gi|220702380|pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
           Geobacillus Stearothermophilus Kinb With The Inhibitor
           Sda
          Length = 244

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 23  PSIAIKE-------LI---ENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           P   I E       L+   +N+++A     + +V   I   G+   +I D G GMT E++
Sbjct: 114 PFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDN-GRVLIRIADTGVGMTKEQL 172

Query: 69  PMAVQRHCTSK 79
               + + T+K
Sbjct: 173 ERLGEPYFTTK 183


>gi|197334084|ref|YP_002154784.1| DNA gyrase, B subunit [Vibrio fischeri MJ11]
 gi|197315574|gb|ACH65021.1| DNA gyrase, B subunit [Vibrio fischeri MJ11]
          Length = 805

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 70/247 (28%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--NSVSVSDDGRGIPTSIHEEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  + L     +     Q      +  +   V
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELT--IHRAGEIHQQVYHHGEPEAPLAV 156

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T       +           +      ++   +R ++     VS           
Sbjct: 157 IGKTDTTGTKIRFW----PSEETFTNVVFVYEILAKRLRELSFLNSGVSIKLQ-DMREED 211

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           K +     G     +  +       +    +  S             +N G     Y F 
Sbjct: 212 KADHFMYEGGIQAFVQHLNRNKTPIHQKVFHFDSEREDGISVEVSMQWNDGFQENIYCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 463

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           +R    I  L++N+L   DA    +        +    +I D G G+  E++    +R  
Sbjct: 348 DRLEQVIGNLLDNALRYTDAG-KTIHVKTFAETEYAITEIRDEGRGIPKEDLDKLTERFY 406


>gi|167946193|ref|ZP_02533267.1| multi-sensor signal transduction histidine kinase [Endoriftia
          persephone 'Hot96_1+Hot96_2']
          Length = 98

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 13/60 (21%)

Query: 30 LIENSLDAESSR--------VETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTS 78
          LI N+  A+++         +E +I  G +       I DNG G+  +          TS
Sbjct: 14 LIVNA--AQATSCAEKPQIIIEVMIELGPRGTGLRIDICDNGCGIDPKIAAKLFDPFYTS 71


>gi|170679703|ref|YP_001745304.1| DNA topoisomerase IV subunit B [Escherichia coli SMS-3-5]
 gi|170517421|gb|ACB15599.1| DNA topoisomerase IV, B subunit [Escherichia coli SMS-3-5]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVIGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1307

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 20   IERPSIAIKELIENSLDAESSRV--ETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQR 74
            + R +  +  L+ N+  A+ +    E  +  G   G+    + DNG G+  E +P   +R
Sbjct: 1048 VTRLAQVVSNLLTNA--AKYTESGGEIAVRAGRVEGEVALSVRDNGIGIAPEMLPSVFER 1105

Query: 75   H 75
             
Sbjct: 1106 F 1106


>gi|124008608|ref|ZP_01693299.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123985852|gb|EAY25716.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 565

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 27/86 (31%)

Query: 22  RPSIAIKELIENSLDAESSRVETV---IAGGGKSFFQI--TDNGFGMTSE------EIPM 70
            P   ++E + N+ DA +  V      +   G+   +I   D+G GM  +      ++  
Sbjct: 25  NPLDIVREAVSNAFDARAKNVYISFEVVKRYGEKVLKIVMKDDGLGMDKQGLQSFFDLGN 84

Query: 71  AVQR----------HCT------SKI 80
           ++ R          H T      SKI
Sbjct: 85  SLSRGKEENIGEKGHGTKVYFNSSKI 110


>gi|170719135|ref|YP_001784282.1| DNA topoisomerase IV subunit B [Haemophilus somnus 2336]
 gi|168827264|gb|ACA32635.1| DNA topoisomerase IV, B subunit [Haemophilus somnus 2336]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 30 RPNHLGQEVIDNSVDEALAGHATKIEVILYKD--QSLEVIDNGRGMPVD 76


>gi|113460744|ref|YP_718811.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT]
 gi|112822787|gb|ABI24876.1| DNA topoisomerase IV subunit B [Haemophilus somnus 129PT]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 30 RPNHLGQEVIDNSVDEALAGHATKIEVILYKD--QSLEVIDNGRGMPVD 76


>gi|332293167|ref|YP_004431776.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171253|gb|AEE20508.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 71/220 (32%), Gaps = 35/220 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++N +D     A    +E  I   G+    + D G G+   ++   V +  T    
Sbjct: 80  VKEVLDNCIDEFVMGAG-KTIEVSIQ--GEKVI-VRDYGRGIPLGKVVDVVSKMNTGGKY 135

Query: 78  -S---KISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            S   K S   + + T      A+ ++ +   +   +R  ++ +             +  
Sbjct: 136 DSRAFKKSVGLNGVGTK-----AVNALSSYFRVE-STRDAKSASAEFARGELTNQDLLDE 189

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K+ +  +  +  +I+      P ++       F +
Sbjct: 190 TSRRRGTKVSFV-------PDAEIFKNFKFRSEYVERLIKNYVYLNPGLTIVFNGEKFFS 242

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
               +  ++     G+    I  + GED          + 
Sbjct: 243 ENGLKDLLSESIAEGDRLYDIIHLKGEDIEVAITHSKSQY 282


>gi|330983692|gb|EGH81795.1| DNA topoisomerase IV subunit B [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 268

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  ++ ++     +  ++ D+G GM  +
Sbjct: 33 TRPNHLAQEVIDNSVDEAMAGHAKSIKVILHED--NSLEVIDDGRGMPVD 80


>gi|331091984|ref|ZP_08340816.1| hypothetical protein HMPREF9477_01459 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402883|gb|EGG82450.1| hypothetical protein HMPREF9477_01459 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 497

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 31  IENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           + NS+   D E  R+   I   G  F Q+   DNG G++S+++P    R        D S
Sbjct: 391 VTNSIKYMDKEQGRINLRIKDVG-DFIQVELEDNGKGISSKDLPNIFDRFY----RTDAS 445

Query: 86  NIHTFGFRGEALPSI 100
              + G  G  L SI
Sbjct: 446 RNSSKGGSGIGL-SI 459


>gi|311278050|ref|YP_003940281.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1]
 gi|308747245|gb|ADO46997.1| DNA topoisomerase IV, B subunit [Enterobacter cloacae SCF1]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHAKRVEVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYSIAFENGEK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            E++     V   N GT V             +F  S +   + +T +++  A+  P V 
Sbjct: 148 VEELHVTGTVGKRNTGTSVHFW-------PDESFFDSPRFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      S +        N    E ++ +
Sbjct: 201 IVFKDRVNDSEQTWCYADGLNDYLCEAVNGL 231


>gi|239830977|ref|ZP_04679306.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823244|gb|EEQ94812.1| DNA gyrase, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 826

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 63  VYEVVDNAIDEALAGHATLVTVTLNPDG--SCTVTDNGRGIPTD 104


>gi|188591032|ref|YP_001795632.1| c4-dicarboxylate transport sensor histidine kinase transcriptional
           regulator [Cupriavidus taiwanensis LMG 19424]
 gi|170937926|emb|CAP62910.1| sensor histiidne kinase, transcriptional regulator of
           C4-DICARBOXYLATE TRANSPORT [Cupriavidus taiwanensis LMG
           19424]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  +  G ++    + DNG G+  E +P   +   T+K
Sbjct: 570 RIDVDVQAGEQAVTIVVRDNGTGIAPEALPRLFEPFFTTK 609


>gi|15965186|ref|NP_385539.1| DNA topoisomerase IV subunit B [Sinorhizobium meliloti 1021]
 gi|307309200|ref|ZP_07588871.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C]
 gi|307321530|ref|ZP_07600925.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83]
 gi|15074366|emb|CAC46012.1| Probable topoisomerase IV subunit B [Sinorhizobium meliloti 1021]
 gi|306892837|gb|EFN23628.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti AK83]
 gi|306900346|gb|EFN30962.1| DNA topoisomerase IV, B subunit [Sinorhizobium meliloti BL225C]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+NS+D   A  ++ ++  +   G  +  +TDNG G+  E  P 
Sbjct: 83  EVIDNSMDEAVAGHANFIDVNLDADG--YLTVTDNGRGIPVENHPK 126


>gi|327478616|gb|AEA81926.1| DNA gyrase subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 804

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I         + DNG G+  +
Sbjct: 44 EVVDNSIDEALAGYCSDISITIHTD--ESITVRDNGRGIPVD 83


>gi|312882232|ref|ZP_07741978.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370076|gb|EFP97582.1| DNA gyrase subunit B [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 805

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--NSVSVRDDGRGIPTEMHPEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     N  +Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGNIHSQTYHHGEPQAPLAVLG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R  +           + +   +++   +R ++     VS      +    K
Sbjct: 159 DTQNTGTEIR-FW----PSAETFSNTEFHYDILAKRLRELSFLNSGVSIKL-IDEREDDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 213 SDHFMFEGGIQAFVDHLNTNKTPIIDKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|290956924|ref|YP_003488106.1| two-component sensor [Streptomyces scabiei 87.22]
 gi|260646450|emb|CBG69547.1| putative two-component sensor [Streptomyces scabiei 87.22]
          Length = 575

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
               +  L++N+LDA +     RVE  +   G++   ++ D G G+  ++  +      +
Sbjct: 414 LVTVVGNLVDNALDAVAGTPCARVEVDLRTEGRTAVLRVRDTGPGVPPDKRELIFTEGWS 473

Query: 78  SK 79
           +K
Sbjct: 474 TK 475


>gi|253575359|ref|ZP_04852697.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845356|gb|EES73366.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 511

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 25  IAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
             +K L  N+++A        + + ++        + D+G G+  E +P   + H T+K 
Sbjct: 346 QVMKNLFYNAIEAMSEGGCLTITSSLSQETLD-ISVRDSGCGIAPEAMPYIFEPHFTTKS 404

Query: 81  SDD 83
           +++
Sbjct: 405 NEE 407


>gi|225388694|ref|ZP_03758418.1| hypothetical protein CLOSTASPAR_02430 [Clostridium asparagiforme
           DSM 15981]
 gi|225045292|gb|EEG55538.1| hypothetical protein CLOSTASPAR_02430 [Clostridium asparagiforme
           DSM 15981]
          Length = 682

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 41  RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQR 74
           R+       GG    +++DNG G++ E +P A +R
Sbjct: 595 RICVSAEETGGSICVRVSDNGSGISPEFLPHAFER 629


>gi|212632928|ref|YP_002309453.1| DNA gyrase subunit B [Shewanella piezotolerans WP3]
 gi|212554412|gb|ACJ26866.1| DNA gyrase, B subunit [Shewanella piezotolerans WP3]
          Length = 805

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     +TD+G G+  E
Sbjct: 43 EVVDNSIDEALAGHCSDITITIHADG--SVSVTDDGRGIPVE 82


>gi|160939585|ref|ZP_02086933.1| hypothetical protein CLOBOL_04477 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437376|gb|EDP15140.1| hypothetical protein CLOBOL_04477 [Clostridium bolteae ATCC
           BAA-613]
          Length = 584

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 30  LIENSL--------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           L+EN++        +  +  +E V   G +    + D+G GMT  ++ 
Sbjct: 477 LVENAIYHGIQEKPEGGAISIEIVHETGDRIRISVIDDGIGMTPAQLE 524


>gi|146280401|ref|YP_001170554.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501]
 gi|145568606|gb|ABP77712.1| DNA gyrase subunit B [Pseudomonas stutzeri A1501]
          Length = 804

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I         + DNG G+  +
Sbjct: 44 EVVDNSIDEALAGYCSDISITIHTD--ESITVRDNGRGIPVD 83


>gi|170720229|ref|YP_001747917.1| histidine kinase [Pseudomonas putida W619]
 gi|169758232|gb|ACA71548.1| histidine kinase [Pseudomonas putida W619]
          Length = 585

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  I     +    + D+G G+   ++        
Sbjct: 476 RLEQVLINLLRNALDAMADKRYKRLEIRIEPEHDQWRLSVLDSGGGIAETDLARVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|87200064|ref|YP_497321.1| multi-sensor signal transduction histidine kinase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135745|gb|ABD26487.1| multi-sensor signal transduction histidine kinase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 711

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSE 66
           E     +  L++N+LDA    +   +     G     ++ D G GM++E
Sbjct: 587 EGLEQVVLHLVQNALDASPDGMAVFLQLHADGLYCTIEVIDTGCGMSAE 635


>gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 596

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHC 76
            I+ L++N++   DA + +V       G    Q  + DNG G+  +++    +R  
Sbjct: 484 VIRNLLDNAVKYVDAGTGKVRFRAFRTG-DSVQFDVEDNGSGIAHQDLERIFERFY 538


>gi|320176204|gb|EFW51268.1| Topoisomerase IV subunit B [Shigella dysenteriae CDC 74-1112]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|302344137|ref|YP_003808666.1| CheA signal transduction histidine kinase [Desulfarculus baarsii
           DSM 2075]
 gi|301640750|gb|ADK86072.1| putative CheA signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 25/85 (29%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLD-----------AE---SSRVETV-IAGGG 50
           L + +I QIA       P   +K L+ NS D           A    +  +        G
Sbjct: 141 LDKNVIEQIA------DP---LKHLVRNSADHGLEQPDERLRAGKPEAGLIHLRAYQQEG 191

Query: 51  KSFFQITDNGFGMTSEE-IPMAVQR 74
           +   ++ D+G G+  E  +  A++R
Sbjct: 192 RIIIEVIDDGRGIDREAVLAKAIER 216


>gi|302342664|ref|YP_003807193.1| CheA signal transduction histidine kinase [Desulfarculus baarsii
           DSM 2075]
 gi|301639277|gb|ADK84599.1| CheA signal transduction histidine kinase [Desulfarculus baarsii
           DSM 2075]
          Length = 687

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 25/85 (29%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLD-----------AE---SSRVETV-IAGGG 50
           L + +I QIA       P   +K L+ NS D           A    +  +        G
Sbjct: 402 LDKNVIEQIA------DP---LKHLVRNSADHGLEQPDERLRAGKPEAGLIHLRAYQQEG 452

Query: 51  KSFFQITDNGFGMTSEE-IPMAVQR 74
           +   ++ D+G G+  E  +  A++R
Sbjct: 453 RIIIEVIDDGRGIDREAVLAKAIER 477


>gi|301325620|ref|ZP_07219086.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1]
 gi|300847592|gb|EFK75352.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 78-1]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|281180082|dbj|BAI56412.1| DNA topoisomerase IV subunit B [Escherichia coli SE15]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|266624014|ref|ZP_06116949.1| putative sensor protein ResE [Clostridium hathewayi DSM 13479]
 gi|288864167|gb|EFC96465.1| putative sensor protein ResE [Clostridium hathewayi DSM 13479]
          Length = 409

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 31  IENSLD---AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           ++N+LD   A    +              I+DNG G+  E+I    +R   SK S D   
Sbjct: 312 VKNALDHTEAG-GEIHISWEHSPIMLRVYISDNGSGIAPEDIHHIFKRFYRSKKSLDTQG 370

Query: 87  IH 88
           I 
Sbjct: 371 IG 372


>gi|283798611|ref|ZP_06347764.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|291073595|gb|EFE10959.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|295090639|emb|CBK76746.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Clostridium cf. saccharolyticum K10]
 gi|295115714|emb|CBL36561.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [butyrate-producing bacterium SM4/1]
          Length = 496

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
           +   I   G      I DNG G+ ++++P    R        D S   + G  G  L SI
Sbjct: 405 INIRIKDDGDFVQIVIEDNGKGIAAKDLPYIFDRFY----RTDSSRNSSKGGSGIGL-SI 459


>gi|187776723|ref|ZP_02993196.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC
           15579]
 gi|187775382|gb|EDU39184.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC
           15579]
          Length = 906

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 27/96 (28%)

Query: 2   KIR-KLSEKII------NQIAAGEIIERPSIAIKELIENSL-----DAESSRVETV-IAG 48
           KI+ K+ E +I      + I   +++         L++NSL     D   S +E      
Sbjct: 776 KIKVKIPENVIMAPMDGSLIK--QVLIN-------LLDNSLKFTPKD---SLIEVRAYEK 823

Query: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHCT--SKISD 82
             K FF++ DNG G++ E +P    R  T  SKISD
Sbjct: 824 EEKVFFEVIDNGNGISEEILPHIFDRFFTNGSKISD 859


>gi|170765612|ref|ZP_02900423.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627]
 gi|170124758|gb|EDS93689.1| DNA topoisomerase IV, B subunit [Escherichia albertii TW07627]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|119899672|ref|YP_934885.1| putative two-component system sensor protein [Azoarcus sp. BH72]
 gi|119672085|emb|CAL95999.1| putative two-component system sensor protein [Azoarcus sp. BH72]
          Length = 868

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVI-AGGGKSFFQITDNGFG 62
           E  S  ++ LI+N+L    DA+  R+        G    ++ DNG G
Sbjct: 761 EGLSQVLRNLIDNALKYSRDAQPPRIVISAAEQNGVCHIRVQDNGIG 807


>gi|26249607|ref|NP_755647.1| DNA topoisomerase IV subunit B [Escherichia coli CFT073]
 gi|82778361|ref|YP_404710.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197]
 gi|91212456|ref|YP_542442.1| DNA topoisomerase IV subunit B [Escherichia coli UTI89]
 gi|110643276|ref|YP_671006.1| DNA topoisomerase IV subunit B [Escherichia coli 536]
 gi|117625344|ref|YP_854666.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1]
 gi|187730460|ref|YP_001881797.1| DNA topoisomerase IV subunit B [Shigella boydii CDC 3083-94]
 gi|191172547|ref|ZP_03034087.1| DNA topoisomerase IV, B subunit [Escherichia coli F11]
 gi|215488363|ref|YP_002330794.1| DNA topoisomerase IV subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560115|ref|YP_002393028.1| DNA topoisomerase IV subunit B [Escherichia coli S88]
 gi|218691333|ref|YP_002399545.1| DNA topoisomerase IV subunit B [Escherichia coli ED1a]
 gi|227887749|ref|ZP_04005554.1| DNA topoisomerase IV subunit B [Escherichia coli 83972]
 gi|237706211|ref|ZP_04536692.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA]
 gi|300973274|ref|ZP_07172113.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1]
 gi|300993488|ref|ZP_07180429.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1]
 gi|301048139|ref|ZP_07195176.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1]
 gi|306816617|ref|ZP_07450749.1| DNA topoisomerase IV subunit B [Escherichia coli NC101]
 gi|309785325|ref|ZP_07679956.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617]
 gi|312968625|ref|ZP_07782834.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75]
 gi|331648830|ref|ZP_08349918.1| DNA topoisomerase IV, B subunit [Escherichia coli M605]
 gi|331659322|ref|ZP_08360264.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206]
 gi|26110015|gb|AAN82220.1|AE016766_308 Topoisomerase IV subunit B [Escherichia coli CFT073]
 gi|81242509|gb|ABB63219.1| DNA topoisomerase IV subunit B [Shigella dysenteriae Sd197]
 gi|91074030|gb|ABE08911.1| topoisomerase IV subunit B [Escherichia coli UTI89]
 gi|110344868|gb|ABG71105.1| topoisomerase IV subunit B [Escherichia coli 536]
 gi|115514468|gb|ABJ02543.1| DNA topoisomerase IV subunit B [Escherichia coli APEC O1]
 gi|168812185|gb|ACA30266.1| ParE [Shigella boydii]
 gi|187427452|gb|ACD06726.1| DNA topoisomerase IV, B subunit [Shigella boydii CDC 3083-94]
 gi|190907215|gb|EDV66814.1| DNA topoisomerase IV, B subunit [Escherichia coli F11]
 gi|215266435|emb|CAS10873.1| DNA topoisomerase IV, subunit B [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366884|emb|CAR04654.1| DNA topoisomerase IV, subunit B [Escherichia coli S88]
 gi|218428897|emb|CAR09845.2| DNA topoisomerase IV, subunit B [Escherichia coli ED1a]
 gi|222034762|emb|CAP77504.1| DNA topoisomerase 4 subunit B [Escherichia coli LF82]
 gi|226899251|gb|EEH85510.1| topoisomerase IV subunit B [Escherichia sp. 3_2_53FAA]
 gi|227835145|gb|EEJ45611.1| DNA topoisomerase IV subunit B [Escherichia coli 83972]
 gi|294490177|gb|ADE88933.1| DNA topoisomerase IV, B subunit [Escherichia coli IHE3034]
 gi|300299975|gb|EFJ56360.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 185-1]
 gi|300305085|gb|EFJ59605.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 200-1]
 gi|300410854|gb|EFJ94392.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 45-1]
 gi|305850182|gb|EFM50641.1| DNA topoisomerase IV subunit B [Escherichia coli NC101]
 gi|307555134|gb|ADN47909.1| topoisomerase IV subunit B [Escherichia coli ABU 83972]
 gi|307625356|gb|ADN69660.1| DNA topoisomerase IV subunit B [Escherichia coli UM146]
 gi|308926445|gb|EFP71921.1| DNA topoisomerase IV, B subunit [Shigella dysenteriae 1617]
 gi|312286843|gb|EFR14754.1| DNA topoisomerase IV, B subunit [Escherichia coli 2362-75]
 gi|312947600|gb|ADR28427.1| DNA topoisomerase IV subunit B [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288799|gb|EFU48197.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 110-3]
 gi|315295079|gb|EFU54416.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 153-1]
 gi|315297702|gb|EFU56979.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 16-3]
 gi|320184185|gb|EFW59001.1| Topoisomerase IV subunit B [Shigella flexneri CDC 796-83]
 gi|323951438|gb|EGB47313.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957810|gb|EGB53524.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011956|gb|EGB81175.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 60-1]
 gi|330909096|gb|EGH37610.1| topoisomerase 4 subunit B [Escherichia coli AA86]
 gi|331042577|gb|EGI14719.1| DNA topoisomerase IV, B subunit [Escherichia coli M605]
 gi|331053904|gb|EGI25933.1| DNA topoisomerase IV, B subunit [Escherichia coli TA206]
 gi|332092196|gb|EGI97274.1| DNA topoisomerase IV, B subunit [Shigella boydii 3594-74]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.092,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|325204033|gb|ADY99486.1| hypothetical protein NMBM01240355_0959 [Neisseria meningitidis
          M01-240355]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 29 ELIENSLDAESSRVETVIAGGGKS-----FFQITDNGFGMTSEEI 68
          E I NSLDA ++++   I    K+       +ITDNG G   E  
Sbjct: 24 EAIANSLDANATKINIEINIQDKTAFHTLKIKITDNGDGFIDENF 68


>gi|324005383|gb|EGB74602.1| DNA topoisomerase IV, B subunit [Escherichia coli MS 57-2]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R               
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGET 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|293363914|ref|ZP_06610650.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
 gi|292552404|gb|EFF41178.1| DNA gyrase, B subunit, C-terminal domain protein [Mycoplasma
           alligatoris A21JP2]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 16/67 (23%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKS-FFQITDNGFGMT-------SEEIPMAV-QRH 75
           E+++NS+D   A  ++++   +   G      I DNG G+           + +   + H
Sbjct: 43  EIVDNSIDEALAGFANKISVKL---GIDGSVTIEDNGRGIPVGKTESGRSAVELVFTELH 99

Query: 76  CTSKISD 82
              K ++
Sbjct: 100 AGGKFNE 106


>gi|253568273|ref|ZP_04845684.1| heat shock protein 90 [Bacteroides sp. 1_1_6]
 gi|251842346|gb|EES70426.1| heat shock protein 90 [Bacteroides sp. 1_1_6]
          Length = 667

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     +   +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTIHVEL---GKDTITISDRGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++       
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYRDEAQ 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AIKWTCD 147


>gi|293336227|ref|NP_001168561.1| hypothetical protein LOC100382343 [Zea mays]
 gi|223949177|gb|ACN28672.1| unknown [Zea mays]
          Length = 726

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 88/259 (33%), Gaps = 47/259 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E+++N++D   A  +S+++ V+     +   +TDNG G+ ++  P       T K   
Sbjct: 121 VYEILDNAVDEAQAGHASKIDVVLHDD--NSVSVTDNGRGIPTDMHPQ------TKK--S 170

Query: 83  DFSNIHTF------------------GFRGEALPSIGAVSH-LTLMSRPPQNNTGA---- 119
               + T                   G  G  L  + A+S  L +               
Sbjct: 171 CVETVLTLMHAGGKFGGSKSGYSVSGGLHGVGLSVVNALSETLEVTVWRDGKEHRQSYSR 230

Query: 120 -QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
            +        +     +   GT +         P +  F  +   + N I+  IR +A  
Sbjct: 231 GKPTTRLTSSTLTGETSSRQGTRIRF------WPDKDIFTTTIDFDFNTISSRIRELAFL 284

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERI-SQVIGEDFINNAVELNEKSNEITLQGYT 237
            P+++   +  + +  + N     G   E +      +  +++ +   ++ + IT+    
Sbjct: 285 NPELTIILTKEEGHTVQRNEYCYAGGLVEYVKWLNTDKKPLHDPIAFRKELDGITVD--V 342

Query: 238 GIPTFNRGNANQFYVFING 256
            +   +   ++    + N 
Sbjct: 343 SLQWSSDSYSDTVLGYANS 361


>gi|218296312|ref|ZP_03497068.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23]
 gi|218243384|gb|EED09914.1| DNA gyrase, B subunit [Thermus aquaticus Y51MC23]
          Length = 641

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ + T +   G     + DNG G+  +
Sbjct: 44 KEILDNAVDEALAGYATEITTTLNPDG--SLTVEDNGRGIPVD 84


>gi|171913703|ref|ZP_02929173.1| DNA gyrase subunit B [Verrucomicrobium spinosum DSM 4136]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 21 ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ER     + E+++NS+D   A     +   I   G     + D+G G+  E
Sbjct: 48 ERGLHHCVFEVLDNSIDEHLAGFCKTITVTIHSDG--SCSVEDDGRGIPVE 96


>gi|153820449|ref|ZP_01973116.1| DNA mismatch repair protein MutL [Vibrio cholerae NCTC 8457]
 gi|126509008|gb|EAZ71602.1| DNA mismatch repair protein MutL [Vibrio cholerae NCTC 8457]
          Length = 216

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 32/216 (14%)

Query: 376 LSTNDLLPSDDPTYSEDNDPVE--ESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHA 433
           + T DL   +  T S     +E  ++     +LG A   +   Y++  +  G V++  + 
Sbjct: 1   MQTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAGQYLLMSSPQGCVLISLYQ 60

Query: 434 AHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLGIKAERFGPN 493
           A +  +  +   +     + +Q LL P  + L E E  +   H   L +LGI+ +    +
Sbjct: 61  AQQLKL--RGLLNAQHGALKAQPLLVPLALKLNESEWQVAQRHSSALLQLGIELKSRTNH 118

Query: 494 AIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENILATMACYGSIRSGRKM- 552
           +I +  +P  L ++N+ QLL D++      S +  L       LA             + 
Sbjct: 119 SIMVMAVPQPLRQQNLQQLLPDLLSYAASCSESQALS---HQALA-----------DWLT 164

Query: 553 ----------QSIEMNRLLREMEKN---PNSSQCNH 575
                        E   L+ E+E+        Q  H
Sbjct: 165 QRIVVEKRDYTLAEAIGLIAELEQLWQGNLPLQDPH 200


>gi|121309742|dbj|BAF44193.1| DNA gyrase subunit B [Leptospira kmetyi serovar Malaysia]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--IEVRDNGRGIPVD 69


>gi|89055033|ref|YP_510484.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
 gi|88864582|gb|ABD55459.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
          Length = 588

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N+LDA   +    ++ +I  G +    + D+G G+  +++    +   T
Sbjct: 477 RLEQVIINLLRNALDAMGGADEKELDLIIVEGDEVVLTVRDSGPGI--DDLDALFEPFYT 534

Query: 78  SK 79
           +K
Sbjct: 535 TK 536


>gi|58761281|gb|AAW82355.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
          Length = 452

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          + E++ NS+D   A    R++ ++   G     + DNG G+  +        H T+KIS 
Sbjct: 5  VYEIVYNSVDEAMAGVCDRIKVIMFKDG--SVSVEDNGRGIPVD-------IHSTTKISA 55

Query: 83 DFSNIHT 89
              + T
Sbjct: 56 -LETVMT 61


>gi|58761285|gb|AAW82357.1| DNA gyrase subunit B [Dehalococcoides sp. FL2]
          Length = 448

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          + E++ NS+D   A    R++ ++   G     + DNG G+  +        H T+KIS 
Sbjct: 1  VYEIVYNSVDEAMAGVCDRIKVIMFKDG--SVSVEDNGRGIPVD-------IHSTTKISA 51

Query: 83 DFSNIHT 89
              + T
Sbjct: 52 -LETVMT 57


>gi|58761291|gb|AAW82360.1| DNA gyrase subunit B [Dehalococcoides sp. Pinellas]
          Length = 451

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          + E++ NS+D   A    R++ ++   G     + DNG G+  +        H T+KIS 
Sbjct: 4  VYEIVYNSVDEAMAGVCDRIKVIMFKDG--SVSVEDNGRGIPVD-------IHSTTKISA 54

Query: 83 DFSNIHT 89
              + T
Sbjct: 55 -LETVMT 60


>gi|15614483|ref|NP_242786.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174538|dbj|BAB05639.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 548

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 30  LIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA     + +        G G    ++ D G GM+ +++        T+K
Sbjct: 444 LLTNAMDAMERGGT-IRVETGKDLGNGMFSIKVQDEGCGMSEDQLNQLFNPFFTTK 498


>gi|73747960|ref|YP_307199.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1]
 gi|147668656|ref|YP_001213474.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
 gi|73659676|emb|CAI82283.1| DNA gyrase, subunit B [Dehalococcoides sp. CBDB1]
 gi|146269604|gb|ABQ16596.1| DNA gyrase subunit B [Dehalococcoides sp. BAV1]
          Length = 642

 Score = 43.5 bits (101), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E++ NS+D   A    R++ ++   G     + DNG G+  +        H T+KIS 
Sbjct: 50  VYEIVYNSVDEAMAGVCDRIKVIMFKDG--SVSVEDNGRGIPVD-------IHSTTKISA 100

Query: 83  DFSNIHT 89
               + T
Sbjct: 101 -LETVMT 106


>gi|271498905|ref|YP_003331930.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech586]
 gi|270342460|gb|ACZ75225.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech586]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 76/208 (36%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + +         N GT V            + F  S +     +T +++  A+  P V 
Sbjct: 148 VQDLMVTGTCGRRNTGTRVRFW-------PDVTFFDSPRFSVLSLTHLLKAKAVLCPGVE 200

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
             F    ++  +       G   + + +
Sbjct: 201 IVFKDGVNDTEQ--RWCYQGGLSDYLCE 226


>gi|182701573|ref|ZP_02612747.2| sensor protein ResE [Clostridium botulinum NCTC 2916]
 gi|182670551|gb|EDT82525.1| sensor protein ResE [Clostridium botulinum NCTC 2916]
          Length = 349

 Score = 43.5 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 19  IIERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQR 74
           IIE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R
Sbjct: 242 IIEAISNIVK----NAFDHTKKGNAIYIEWKQF-ASVIQVIIKDNGNGIHPEDLHHIFKR 296

Query: 75  HCTSKISDDFSNIH 88
              S+ S D   I 
Sbjct: 297 FYRSRFSKDTQGIG 310


>gi|86159600|ref|YP_466385.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776111|gb|ABC82948.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 408

 Score = 43.5 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 22  RPSIAIKELIENSLDA------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R +  +  L+ N+  A        + V       G +  ++ D+G G+  E      +  
Sbjct: 278 RLAQVVGNLLSNA--AKFAGPGGRTEVSVAREEPGIAVVRVRDDGVGIAPEVRSRLFEPF 335

Query: 76  C 76
            
Sbjct: 336 A 336


>gi|70732127|ref|YP_261883.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346426|gb|AAY94032.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 588

 Score = 43.5 bits (101), Expect = 0.094,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA       R+E  +         ++ DNG G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMQDKPHKRLEISLEAEDQLWQLRVADNGGGIAEEHLLSVFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|291320739|ref|YP_003516004.1| DNA gyrase subunit B [Mycoplasma agalactiae]
 gi|290753075|emb|CBH41051.1| DNA gyrase subunit B [Mycoplasma agalactiae]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  I   G  + +I DNG G+ 
Sbjct: 54 EIVDNSVDECMAGYANFIKITICKDG--YIEIEDNGRGIP 91


>gi|289705900|ref|ZP_06502279.1| DNA gyrase, B subunit [Micrococcus luteus SK58]
 gi|289557385|gb|EFD50697.1| DNA gyrase, B subunit [Micrococcus luteus SK58]
          Length = 720

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++ ++  +   GG    ++ D+G G+  +
Sbjct: 79  VYEVVDNSVDEALAGYATGIDVTLQADGG---VRVADDGRGIPVD 120


>gi|239916576|ref|YP_002956134.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
 gi|281414960|ref|ZP_06246702.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
 gi|239837783|gb|ACS29580.1| DNA gyrase subunit B [Micrococcus luteus NCTC 2665]
          Length = 720

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++ ++  +   GG    ++ D+G G+  +
Sbjct: 79  VYEVVDNSVDEALAGYATGIDVTLQADGG---VRVADDGRGIPVD 120


>gi|226947967|ref|YP_002803058.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841018|gb|ACO83684.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 349

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 19  IIERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQR 74
           IIE  S  +K    N+ D   + + +         S  Q+   DNG G+  E++    +R
Sbjct: 242 IIEAISNIVK----NAFDHTKKGNAIYIEWKQF-ASVIQVIIKDNGNGIHPEDLHHIFKR 296

Query: 75  HCTSKISDDFSNIH 88
              S+ S D   I 
Sbjct: 297 FYRSRFSKDTQGIG 310


>gi|221200234|ref|ZP_03573276.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
 gi|221205915|ref|ZP_03578929.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221173927|gb|EEE06360.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221179575|gb|EEE11980.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQPAPDGGAVIVVRDRGPGIPDDQLDAVFEPF 387


>gi|221209275|ref|ZP_03582256.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD1]
 gi|221169963|gb|EEE02429.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD1]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQPAPDGGAVIVVRDRGPGIPDDQLDAVFEPF 387


>gi|218887173|ref|YP_002436494.1| DNA gyrase subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758127|gb|ACL09026.1| DNA gyrase, B subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 798

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A   SR+   +     +   ++DNG G+  +  P   +         
Sbjct: 43  VYEVVDNSIDEAMAGYCSRIVVKLHLD--NSVTVSDNGRGIPVDLHPKEGKPAVEVVMTK 100

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEK-ISSV 131
            H   K  +D   + + G  G  +  + A+S  L +  R        + A    +     
Sbjct: 101 LHAGGKFDNDAYKV-SGGLHGVGVSCVNALSEWLEVTVRRDGKRHRMRFARGAVQGPLEF 159

Query: 132 RPVAMNPGTIVEVR 145
              + N GT V  +
Sbjct: 160 LGESANHGTTVHFK 173


>gi|218247403|ref|YP_002372774.1| heat shock protein 90 [Cyanothece sp. PCC 8801]
 gi|257061260|ref|YP_003139148.1| heat shock protein 90 [Cyanothece sp. PCC 8802]
 gi|218167881|gb|ACK66618.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 8801]
 gi|256591426|gb|ACV02313.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 8802]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N++DA S                   +   +    K+   I+DNG GMT++EI 
Sbjct: 32  LRELISNAVDAISKLKMASFAGEVKTEVPEPEIVISVDKENKTL-SISDNGIGMTADEIK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVSH-LTL--MSRPPQNN 116
             + +   S          K ++D       GF      S   V+  + +  +S      
Sbjct: 91  KYINQVAFSSAEEFIHKYQKTANDLIGHFGLGF-----YSAFMVAKQVEIDTLSYQEGAQ 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVR 145
                     +           GT + + 
Sbjct: 146 AVHWSCDGSPEFELTESSRTEIGTTMTLT 174


>gi|161520009|ref|YP_001583436.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|189353809|ref|YP_001949436.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160344059|gb|ABX17144.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|189337831|dbj|BAG46900.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQPAPDGGAVIVVRDRGPGIPDDQLDAVFEPF 387


>gi|154482535|ref|ZP_02024983.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC
          27560]
 gi|149736560|gb|EDM52446.1| hypothetical protein EUBVEN_00202 [Eubacterium ventriosum ATCC
          27560]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   +   G +   + DNG G+  +
Sbjct: 41 EIVDNSVDEHLAGYCSEITVTLEKDGSA--TVEDNGRGIPVD 80


>gi|148377999|ref|YP_001256875.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2]
 gi|148292045|emb|CAL59437.1| DNA gyrase subunit B [Mycoplasma agalactiae PG2]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  I   G  + +I DNG G+ 
Sbjct: 54 EIVDNSVDECMAGYANFIKITICKDG--YIEIEDNGRGIP 91


>gi|189423086|ref|YP_001950263.1| DNA gyrase B subunit [Geobacter lovleyi SZ]
 gi|189419345|gb|ACD93743.1| DNA gyrase, B subunit [Geobacter lovleyi SZ]
          Length = 802

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 20 IERPSIA-----IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I   + A     + E+++NS+D   A   + V   I   G     + DNG G+ ++
Sbjct: 37 IGSTASAGLHHLVYEIVDNSIDEALAGHCNDVSVTINTDG--SITVVDNGRGIPTD 90


>gi|86358185|ref|YP_470077.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86282287|gb|ABC91350.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 448

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 26  AIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ N++D       +   ++  G     + D G G+ +E   +  +   
Sbjct: 353 AVSNLLRNAIDHGGGGGMITVSVSAAGGGRISVADEGPGIAAEHRELVFEPFY 405


>gi|454038|gb|AAA58940.1| DNA gyrase b subunit [Borrelia burgdorferi]
          Length = 385

 Score = 43.5 bits (101), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D    A   R++ +I     +   + DNG G+ ++
Sbjct: 41 VYEVVDNSIDEALAAFCDRIDVIINLD--NTITVIDNGRGIPTD 82


>gi|317485000|ref|ZP_07943883.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923738|gb|EFV44941.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 30  LIENSLDA----ESSR---VETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+EN++DA     S +   V   +   G       +I DNG GMT E          +SK
Sbjct: 535 LLENAVDACRADGSKKEHYVRVSVK--GLPDAVEVRIEDNGIGMTEETRTKLFTLFFSSK 592


>gi|284010227|dbj|BAI66713.1| DNA gyrase B [Borrelia sp. Tick98M]
          Length = 625

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + ELI+NS+D A      ++E +I     +   ++DNG G+ ++
Sbjct: 28 VYELIDNSIDEALGGFCDKIEVIINSD--NSITVSDNGRGIPTD 69


>gi|239833957|ref|ZP_04682285.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301]
 gi|239822020|gb|EEQ93589.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301]
          Length = 732

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E      G  F  ++DNG G+  +E P
Sbjct: 129 EVIDNSMDEAVAGHANFIEVSFDADG--FVTVSDNGRGIPVDEHP 171


>gi|170721624|ref|YP_001749312.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759627|gb|ACA72943.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
            Q+ D+G GM +E++  A +   TSK
Sbjct: 449 LQVMDDGHGMPAEDVARAFEPFFTSK 474


>gi|154486693|ref|ZP_02028100.1| hypothetical protein BIFADO_00514 [Bifidobacterium adolescentis
           L2-32]
 gi|154084556|gb|EDN83601.1| hypothetical protein BIFADO_00514 [Bifidobacterium adolescentis
           L2-32]
          Length = 469

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 25  IAIKELIENSLDAES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN+++     + V   I    GK   ++ D G G+ +  +    +R  
Sbjct: 330 TAVKNLVENAINYSPEHTTVAVGIGIESGKVAIRVVDQGIGIPAASLSRIFERFY 384


>gi|153010978|ref|YP_001372192.1| DNA topoisomerase IV subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151562866|gb|ABS16363.1| DNA topoisomerase IV, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 704

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E      G  F  ++DNG G+  +E P
Sbjct: 101 EVIDNSMDEAVAGHANFIEVSFDADG--FVTVSDNGRGIPVDEHP 143


>gi|95020419|gb|ABF50734.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 14 EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQVDSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|95020421|gb|ABF50735.1| DNA gyrase subunit B [Mesoplasma entomophilum]
 gi|95020423|gb|ABF50736.1| DNA gyrase subunit B [Mesoplasma entomophilum]
 gi|95020425|gb|ABF50737.1| DNA gyrase subunit B [Mesoplasma entomophilum]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 14 EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|95020427|gb|ABF50738.1| DNA gyrase subunit B [Mesoplasma grammopterae]
 gi|95020429|gb|ABF50739.1| DNA gyrase subunit B [Mesoplasma grammopterae]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 14 EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|94957782|gb|ABF47141.1| DNA gyrase subunit B [Mesoplasma tabanidae]
          Length = 552

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 13 EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 70

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 71 AGGKFDSDSYKIS 83


>gi|94957784|gb|ABF47142.1| DNA gyrase subunit B [Mesoplasma chauliocola]
          Length = 553

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 14 EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQTDSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|93009658|gb|ABE98141.1| DNA gyrase subunit B [Mesoplasma coleopterae]
          Length = 563

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 20 EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 77

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 78 AGGKFDSDSYKIS 90


>gi|170725970|ref|YP_001759996.1| PAS/PAC sensor-containing signal transduction histidine kinase
           [Shewanella woodyi ATCC 51908]
 gi|169811317|gb|ACA85901.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           woodyi ATCC 51908]
          Length = 370

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A S++V+        +    I DNG G+        ++   T+K
Sbjct: 249 LSSAINNLVVNSIEAGSTKVKIQGYETQSNLHIDIIDNGKGLDKAMQQKVLEPFFTTK 306


>gi|50364821|ref|YP_053246.1| DNA gyrase subunit B [Mesoplasma florum L1]
 gi|50363377|gb|AAT75362.1| DNA gyrase subunit B [Mesoplasma florum L1]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
           E+++NS+D   A  ++++   I   G     + DNG G+            + +   + H
Sbjct: 42  EIMDNSVDEAMAGFANKIILTITKEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 99

Query: 76  CTSKISDDFSNIH 88
              K   D   I 
Sbjct: 100 AGGKFDSDSYKIS 112


>gi|119025294|ref|YP_909139.1| sensor protein [Bifidobacterium adolescentis ATCC 15703]
 gi|118764878|dbj|BAF39057.1| sensor protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 469

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 25  IAIKELIENSLDAES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN+++     + V   I    GK   ++ D G G+ +  +    +R  
Sbjct: 330 TAVKNLVENAINYSPEHTTVAVGIGIESGKVAIRVVDQGIGIPAASLSRIFERFY 384


>gi|330466712|ref|YP_004404455.1| DNA topoisomerase [Verrucosispora maris AB-18-032]
 gi|328809683|gb|AEB43855.1| DNA topoisomerase [Verrucosispora maris AB-18-032]
          Length = 1169

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS D   A  ++ +E  +   G    Q+ D+G G+ ++
Sbjct: 43 VNEILDNSTDEGVAGHATTIEVTLHADG--SVQVDDDGRGIPTD 84


>gi|319790225|ref|YP_004151858.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
 gi|317114727|gb|ADU97217.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
          Length = 384

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 7/59 (11%)

Query: 23  PSIAIKELIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
               +K LI+N++    D     +E       K     + D G+G+    +P   +R  
Sbjct: 276 LYAVLKNLIDNAIKYNRDGG--EIEISFREHAKEVEISVCDTGYGIPKSHLPFIFERFY 332


>gi|296447419|ref|ZP_06889344.1| Heat shock protein Hsp90-like protein [Methylosinus trichosporium
           OB3b]
 gi|296255039|gb|EFH02141.1| Heat shock protein Hsp90-like protein [Methylosinus trichosporium
           OB3b]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 33/128 (25%)

Query: 27  IKELIENSLDA------ESSR------------VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA      ++              V   I    ++   + DNG GM+ E++
Sbjct: 60  LRELVSNAADAIEKLRHDALSDEALAAKAAAPLVTISIDKDARTL-TVADNGVGMSREDL 118

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGEALPSI---------GA--VS-HLTLMSRPPQNN 116
             A+    +S       ++   G  GE   S+          A  V+  + + +R    +
Sbjct: 119 VAALGTIASSGTRAFLDDLEKKG--GEKSASLIGRFGIGFYSAFMVAEKVEVATRRAGAS 176

Query: 117 TGAQIAIS 124
                   
Sbjct: 177 DAFLWTSD 184


>gi|294792552|ref|ZP_06757699.1| putative sensor histidine kinase [Veillonella sp. 6_1_27]
 gi|294456451|gb|EFG24814.1| putative sensor histidine kinase [Veillonella sp. 6_1_27]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           A E+      AI  L++N++   +S ++      G+     +TDNG G+  E +     R
Sbjct: 341 AHEV--SLRRAITNLVDNAIKFTNSTIDISAKLVGRDLVITVTDNGIGIEPEALDHIWDR 398


>gi|294794343|ref|ZP_06759479.1| putative sensor histidine kinase [Veillonella sp. 3_1_44]
 gi|294454673|gb|EFG23046.1| putative sensor histidine kinase [Veillonella sp. 3_1_44]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           A E+      AI  L++N++   +S ++      G+     +TDNG G+  E +     R
Sbjct: 341 AHEV--SLRRAITNLVDNAIKFTNSTIDISAKLVGRDLVITVTDNGIGIEPEALDHIWDR 398


>gi|317050926|ref|YP_004112042.1| DNA gyrase subunit B [Desulfurispirillum indicum S5]
 gi|316946010|gb|ADU65486.1| DNA gyrase, B subunit [Desulfurispirillum indicum S5]
          Length = 799

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          I      + E+++NS+D   A     VE VI     +   +TDNG G+ +E
Sbjct: 33 ITGLHHLVYEVVDNSIDEALAGHCDTVEVVIHTD--NSITVTDNGRGIPTE 81


>gi|282849613|ref|ZP_06258997.1| sensor histidine kinase/response regulator [Veillonella parvula
           ATCC 17745]
 gi|282580550|gb|EFB85949.1| sensor histidine kinase/response regulator [Veillonella parvula
           ATCC 17745]
          Length = 471

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           A E+      AI  L++N++   +S ++      G+     +TDNG G+  E +     R
Sbjct: 357 AHEV--SLRRAITNLVDNAIKFTNSTIDISAKLVGRDLVITVTDNGIGIEPEALDHIWDR 414


>gi|255524865|ref|ZP_05391814.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255511435|gb|EET87726.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 8/52 (15%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI NS+     D     ++ +I   G +   I DNG GM+ +E+     R+ 
Sbjct: 365 LIYNSIIHNDDD---IEIKILIEKCGNTRVCICDNGRGMSEDEVENLFVRYY 413


>gi|269798763|ref|YP_003312663.1| histidine kinase [Veillonella parvula DSM 2008]
 gi|269095392|gb|ACZ25383.1| histidine kinase [Veillonella parvula DSM 2008]
          Length = 471

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           A E+      AI  L++N++   +S ++      G+     +TDNG G+  E +     R
Sbjct: 357 AHEV--SLRRAITNLVDNAIKFTNSTIDISAKLVGRDLVITVTDNGIGIEPEALDHIWDR 414


>gi|221632838|ref|YP_002522060.1| DNA gyrase subunit B [Thermomicrobium roseum DSM 5159]
 gi|221156882|gb|ACM06009.1| DNA gyrase, B subunit [Thermomicrobium roseum DSM 5159]
          Length = 636

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
          E+++NS+D   A    R+E  I   G    ++ D+G G+  +  P   +
Sbjct: 44 EIVDNSVDEALAGYCDRIEVTIHRDG--SVRVWDDGRGIPVDIHPKVGK 90


>gi|149182578|ref|ZP_01861049.1| KinA [Bacillus sp. SG-1]
 gi|148849714|gb|EDL63893.1| KinA [Bacillus sp. SG-1]
          Length = 351

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 31  IENSLDAESS--RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+NS+DA ++  R++  I+   K+ +  I DNG G+    +      + TSK
Sbjct: 250 IKNSIDAITTDGRIKVQISKDDKNVYIYICDNGVGIPKHHLNRVGNSYFTSK 301


>gi|39935288|ref|NP_947564.1| ATPase [Rhodopseudomonas palustris CGA009]
 gi|39649140|emb|CAE27660.1| Possible ATPase [Rhodopseudomonas palustris CGA009]
          Length = 1413

 Score = 43.5 bits (101), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 14/78 (17%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++ P   + EL++N+ DA +S     I       F    NG     E+    ++ H  S 
Sbjct: 49  VQSPRHILSELLQNADDAGASEARVSIEN---DRFIFQHNG-----EDF---IEAHFASI 97

Query: 80  IS---DDFSNIHTFGFRG 94
                 +   +HT GFRG
Sbjct: 98  CRFGYSNKRALHTIGFRG 115


>gi|320159847|ref|YP_004173071.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
 gi|319993700|dbj|BAJ62471.1| DNA gyrase subunit B [Anaerolinea thermophila UNI-1]
          Length = 639

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A +   ++  I     S   + DNG G+  +
Sbjct: 43 VYEVVDNSIDEALAGACDHIQVTIHPD--SSVTVEDNGRGIPVD 84


>gi|316934362|ref|YP_004109344.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris DX-1]
 gi|315602076|gb|ADU44611.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 682

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +A  G  F  ++DNG G+  +
Sbjct: 75  EVIDNSMDEALAGHATFIEVELAADG--FLTVSDNGRGIPVD 114


>gi|282858665|ref|ZP_06267823.1| DNA topoisomerase IV subunit B [Prevotella bivia JCVIHMP010]
 gi|282588583|gb|EFB93730.1| DNA topoisomerase IV subunit B [Prevotella bivia JCVIHMP010]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 95/340 (27%), Gaps = 41/340 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A  +R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 50  LKEVIDNSIDEFKMEAG-NRIEIDIEEN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 106

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL      +   + S                K       
Sbjct: 107 DSKAFK-KSVGLNGVGVKAVNALS-----AKFEVKSFREGKVRHLWFEKGELKDDKTSKS 160

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +                K+ Q   +++  ++R        ++          +
Sbjct: 161 TDENGTFIYFE-------PDNTLFKNYQFHDDIVETMLRNYTYLNTGLTIMYNGRRILSR 213

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G           A 
Sbjct: 214 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 273

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
           + ++    +    K+    IR      I +    P+     ++        + P    I 
Sbjct: 274 KEHIAKTIKEYFGKYEYGDIRNGLVAAIAVNVEEPIFESQTKVKLG--STQMAPDGDTIN 331

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
                 + +FI  ++   ++      S +L  K+  +  +
Sbjct: 332 ----KYVGDFIKLNVDNYLHIHKEDCSDILENKIKETERE 367


>gi|146329798|ref|YP_001209586.1| DNA topoisomerase IV subunit B [Dichelobacter nodosus VCS1703A]
 gi|146233268|gb|ABQ14246.1| DNA topoisomerase IV, B subunit [Dichelobacter nodosus VCS1703A]
          Length = 635

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE--------IP 69
           RP    +E+I+NS+D   A  +  ++  +   G     + D+G GM  +E        + 
Sbjct: 30  RPDHLAQEVIDNSVDEALAGFAHAIDVTLYEDG--SLAVCDDGRGMPVDEHPGEKISGVE 87

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRG------EALPS 99
           + + R H   K S     I + G  G       AL S
Sbjct: 88  LILTRLHAGGKFSQKNYAI-SGGLHGVGVAVVNALSS 123


>gi|121534326|ref|ZP_01666150.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Thermosinus carboxydivorans Nor1]
 gi|121307096|gb|EAX48014.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Thermosinus carboxydivorans Nor1]
          Length = 544

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 26/101 (25%)

Query: 14  IAAGEIIERPS--IAIKELI-------ENSLDAES----SRVETVIA-GGGKSF--FQIT 57
           I A   +  P+    I EL+       +N+ DA +      V        G       +T
Sbjct: 407 ITATSYLPEPADDNVIHELVTITGNLIDNAFDAVAFAQRKNVSISFDYDAGAELLSITVT 466

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98
           D G G+  E +     +  ++K S+D         RG  L 
Sbjct: 467 DTGKGIAPEYLDKIFAKGFSTK-SED---------RGLGLA 497


>gi|118589107|ref|ZP_01546514.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Stappia aggregata IAM 12614]
 gi|118438436|gb|EAV45070.1| Topoisomerase IV, subunit B:DNA gyrase, subunit B:DNA topoisomerase
           II:DNA gyrase, subunit B, C-terminal:ATP-binding region
           [Stappia aggregata IAM 12614]
          Length = 681

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  ++  G  +  ITDNG G+  +
Sbjct: 78  EVIDNSMDEAVAGHATWIDVSLSADG--YLTITDNGRGIPVD 117


>gi|83816748|ref|YP_446507.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855]
 gi|83758142|gb|ABC46255.1| DNA gyrase, B subunit [Salinibacter ruber DSM 13855]
          Length = 652

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 50/145 (34%)

Query: 6   LSEKIINQIAAG--EIIERPSIAIK-------------------ELIENSLD---AE-SS 40
           L ++ I+  AA   +++E      K                   E+++NS+D   A    
Sbjct: 7   LPDRAISDYAASNIQVLEGLEAVRKRPSMYIGDVGLRGLHHLVYEVLDNSIDEAMAGHCD 66

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR----------HCTSKISDDFSNIHTF 90
            +   I   G     I DNG G+  ++ P A  R          H   K   D   + + 
Sbjct: 67  EIGVEIYEDG--SVSIEDNGRGIPVDQHP-AEDRSALEVVMTVLHAGGKFDKDSYQV-SG 122

Query: 91  GFRG------EALPSIGAVSHLTLM 109
           G  G       AL S        + 
Sbjct: 123 GLHGVGVSVVNALAS-----RFEVT 142


>gi|77163566|ref|YP_342091.1| DNA gyrase, B subunit [Nitrosococcus oceani ATCC 19707]
 gi|254435249|ref|ZP_05048756.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27]
 gi|76881880|gb|ABA56561.1| DNA gyrase subunit B [Nitrosococcus oceani ATCC 19707]
 gi|207088360|gb|EDZ65632.1| DNA gyrase, B subunit [Nitrosococcus oceani AFC27]
          Length = 807

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +  +I         I+DNG G+ ++
Sbjct: 44 EVVDNSIDEALAGFCNEISIIIHSD--DSITISDNGRGIPTD 83


>gi|39934402|ref|NP_946678.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648251|emb|CAE26771.1| sensor histidine kinase with a GAF and an unknown domain
            [Rhodopseudomonas palustris CGA009]
          Length = 1380

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 21/87 (24%)

Query: 6    LSEKIINQIAA-----GEIIERPSIAIKELIENSLDA------ESSRVETVIAGGGKSFF 54
            LS++   +I+A      ++I         L+ N++ A       + R+       G    
Sbjct: 1256 LSDQ-RRRISADRVQLQQVIFN-------LVTNAIQAMAEMEESARRIAIRTTDAGDGMV 1307

Query: 55   Q--ITDNGFGMTSEEIPMAVQRHCTSK 79
            +  I D+G GM+ E      +   T+K
Sbjct: 1308 RLTIEDSGCGMSEEVRGKIFEPFFTTK 1334


>gi|18916432|dbj|BAB85508.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
          Length = 374

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVEVILNSD--NSVTVRDDGRGIPVD 53


>gi|18916441|dbj|BAB85511.1| DNA gyrase subunit B [Bradyrhizobium japonicum]
 gi|19979601|dbj|BAB88756.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979603|dbj|BAB88757.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVEVILNSD--NSVTVRDDGRGIPVD 53


>gi|18916435|dbj|BAB85509.1| DNA gyrase subunit B [Bradyrhizobium liaoningense]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVEVILNSD--NSVTVRDDGRGIPVD 53


>gi|320532576|ref|ZP_08033381.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135204|gb|EFW27347.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 353

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 22  RPSIAIKELIENSL--DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
             +  +  +IENSL   A ++ V    A GG + F  ITD G G+  +  P   +RH
Sbjct: 231 SLAQVLATVIENSLRYGAGTTSVSVRSANGGHAVFIDITDEGEGVAEDIAPHVFERH 287


>gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 595

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L    +  +  +       G     + D+G G+  E++P   +R  
Sbjct: 489 LIDNALRHTQSGGTVHIAVQSVKDGLK-IDVKDSGSGIPEEDLPFIFERFY 538


>gi|307354509|ref|YP_003895560.1| DNA topoisomerase VI,subunit B [Methanoplanus petrolearius DSM
           11571]
 gi|307157742|gb|ADN37122.1| DNA topoisomerase VI, B subunit [Methanoplanus petrolearius DSM
           11571]
          Length = 600

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKS--FFQITDNGFGMTSEEIPMAV------Q 73
           IKE ++NSLDA  E+     +   +    K      + DNG G+  +++P          
Sbjct: 40  IKEAVDNSLDACEEAEVLPDIFVGVKKVDKDVYRIIVEDNGPGIVPKQVPFVFGKLLYGS 99

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISG 125
           R    K         + G +G  +    AV  + LT      ++SR    N   +  I  
Sbjct: 100 RFHQIK--------QSRGQQGIGIS--AAVLYAQLTTGVPAVVISRTSYKNKAHRFEIMI 149

Query: 126 EK--------ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAI 177
                                GT +E+              K+       + D +   ++
Sbjct: 150 RTEANEPEVLKDEEIEWDRMHGTRIEIE------------FKTTLAAKKRLLDYLMYTSV 197

Query: 178 AYPKVSFTFSTIK 190
             P          
Sbjct: 198 VNPHARIKADIDG 210


>gi|294140200|ref|YP_003556178.1| flagellar regulatory protein B [Shewanella violacea DSS12]
 gi|293326669|dbj|BAJ01400.1| flagellar regulatory protein B [Shewanella violacea DSS12]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NS++A ++     + G          ITDNG G+  E     ++   T+K
Sbjct: 249 LSSAINNLVINSIEAGAT--LVELRGSETESQIQIHITDNGKGLDKEMQQKVLEPFFTTK 306


>gi|288959967|ref|YP_003450307.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288912275|dbj|BAI73763.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 4   RKLSEKIINQIAAGEII----ERPSIAIKELIENSL-----DAESSRVETVIAGGGK-SF 53
           R+L   + ++I AG ++    E     ++ L+EN++     D     V   +   G  + 
Sbjct: 391 RRL--HMRSRIDAGLVVRASEETLETIVENLVENAVSFSPPD---GTVSVRLTRNGSWTE 445

Query: 54  FQITDNGFGMTSEEIPMAVQRH 75
             + D G G+    +    +R+
Sbjct: 446 LVVEDEGPGVDHANLERIFERY 467


>gi|182678200|ref|YP_001832346.1| DNA topoisomerase IV subunit B [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634083|gb|ACB94857.1| DNA topoisomerase IV, B subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 691

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A  ++ ++     GG  F  + DNG G+  +
Sbjct: 85  EVLDNAMDEAVAGHATFIDVTCETGG--FVTVIDNGRGIPVD 124


>gi|168005788|ref|XP_001755592.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693299|gb|EDQ79652.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 26  AIKELIENSLDA---ESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           A+ EL++N++D     ++ V   ++       S   I D+G GMT + +   +    ++K
Sbjct: 161 AVAELVDNAVDEVVNGATFVSVDVSLHPRNRSSMLVIEDDGGGMTPDRMRQCMSLGYSAK 220


>gi|168019580|ref|XP_001762322.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686400|gb|EDQ72789.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 419

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 26 AIKELIENSLDA---ESSRVETV-IAGG--GKSFFQITDNGFGMTSEEIPMA 71
          AI EL++N++D     ++ V    I     G     + DNG GM+ + I   
Sbjct: 28 AIAELLDNAIDEVSNGATYVRLDKIKNAREGSPALLVQDNGGGMSPDNIRQC 79


>gi|53805052|ref|YP_113319.1| DNA topoisomerase IV subunit B [Methylococcus capsulatus str. Bath]
 gi|53758813|gb|AAU93104.1| DNA topoisomerase IV, B subunit [Methylococcus capsulatus str.
           Bath]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.098,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 23/184 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---EI---- 68
            RP    +E+I+N++D   A  +  +E  + A GG    ++ D+G GM  +   E+    
Sbjct: 30  TRPDHLAQEVIDNAVDEALAGFARLIEIRLLADGGL---EVRDDGRGMPVDIHPELGVSG 86

Query: 69  -PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
             + + R H   K S      ++ G  G  +  + A+S  L +  R              
Sbjct: 87  VEVILTRLHAGGKFSRKAYR-YSGGLHGVGVSVVNALSLRLEVEVRRDGKVHAIAFEKGE 145

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
           +                     +       ++  + +   + +  ++R  A+  P +   
Sbjct: 146 KVGDLTETGTTPRRATGTTVRFW----PEAHYFDNARFSRSRLKHLLRAKAVLCPGLEIR 201

Query: 186 FSTI 189
            +  
Sbjct: 202 MTDD 205


>gi|294786989|ref|ZP_06752243.1| DNA gyrase subunit B [Parascardovia denticolens F0305]
 gi|315226630|ref|ZP_07868418.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
          denticolens DSM 10105]
 gi|294485822|gb|EFG33456.1| DNA gyrase subunit B [Parascardovia denticolens F0305]
 gi|315120762|gb|EFT83894.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Parascardovia
          denticolens DSM 10105]
          Length = 787

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + + +   +   G     + DNG G+  +
Sbjct: 55 EIIDNSVDEALAGACNHIIVTLHKDG--SISVADNGRGIPVD 94


>gi|229003800|ref|ZP_04161609.1| hypothetical protein bmyco0002_7700 [Bacillus mycoides Rock1-4]
 gi|228757401|gb|EEM06637.1| hypothetical protein bmyco0002_7700 [Bacillus mycoides Rock1-4]
          Length = 484

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 17/74 (22%)

Query: 7   SEKIINQIAAGEII-------ERPSIAIKELIENSLDAESSRVET--VIAGGGKSFFQIT 57
            +  I  I +   +       E  +  +K  +       ++ +     I         I 
Sbjct: 362 PDDDIAAIDSHTAVALYRIVQESLTNVVKHTV-------ATEIVINMEIKDCSIEL-SIH 413

Query: 58  DNGFGMTSEEIPMA 71
           DNG G+   +   A
Sbjct: 414 DNGHGIRETDFEKA 427


>gi|300775902|ref|ZP_07085762.1| sensor histidine kinase [Chryseobacterium gleum ATCC 35910]
 gi|300505452|gb|EFK36590.1| sensor histidine kinase [Chryseobacterium gleum ATCC 35910]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+  AES +    +   +    +     + DNG G+         + + TSK
Sbjct: 346 LVTNAKQAESDQRKLIINVDVEQHQRRVMISVQDNGIGIPENMYERIFEPNFTSK 400


>gi|170743430|ref|YP_001772085.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46]
 gi|168197704|gb|ACA19651.1| DNA gyrase, B subunit [Methylobacterium sp. 4-46]
          Length = 808

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     ++DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGHATLVTVTLNPDG--SCTVSDNGRGIPTD 89


>gi|220925683|ref|YP_002500985.1| DNA gyrase subunit B [Methylobacterium nodulans ORS 2060]
 gi|219950290|gb|ACL60682.1| DNA gyrase, B subunit [Methylobacterium nodulans ORS 2060]
          Length = 808

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     ++DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGHATLVTVTLNPDG--SCTVSDNGRGIPTD 89


>gi|126732323|ref|ZP_01748123.1| sensor histidine kinase ChvG [Sagittula stellata E-37]
 gi|126707192|gb|EBA06258.1| sensor histidine kinase ChvG [Sagittula stellata E-37]
          Length = 387

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 22  RPSIAIKELIENSL------DAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAV 72
           R +     LI N++      DA        +       +    + D G G+  E +    
Sbjct: 273 RLAQVFVNLITNAISFCEDGDA------IRVWARRRDNRVLVVVEDTGPGIPEEALQKIF 326

Query: 73  QRHCTSKISDDFSNIHTFG 91
           +R  TS+   DF N    G
Sbjct: 327 KRFYTSRPQSDFGNNSGLG 345


>gi|157165358|ref|YP_001465928.1| DNA gyrase subunit B [Campylobacter concisus 13826]
 gi|112801785|gb|EAT99129.1| DNA gyrase, B subunit [Campylobacter concisus 13826]
          Length = 769

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 13/57 (22%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          E+++NS+D   A     ++  +   G +    +DNG G+  +        H T KIS
Sbjct: 41 EVVDNSIDEAMAGYCDTIDVELTREGSAII--SDNGRGIPVD-------MHPTEKIS 88


>gi|110668558|ref|YP_658369.1| DNA gyrase / DNA topoisomerase II subunit B [Haloquadratum
          walsbyi DSM 16790]
 gi|109626305|emb|CAJ52763.1| DNA gyrase / DNA topoisomerase II subunit B [Haloquadratum
          walsbyi DSM 16790]
          Length = 852

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A    +++  +   G     + DNG G+  +
Sbjct: 41 VYEVVDNAIDEALAGHCDQIDVTLHEDG--SVSVADNGRGIPVD 82


>gi|89099323|ref|ZP_01172200.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085932|gb|EAR65056.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 497

 Score = 43.5 bits (101), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           R+   +  GGK     + D G G+  E++        TSK
Sbjct: 416 RLSISLHTGGKWHSIILEDTGSGIREEDLEKVFTPFFTSK 455


>gi|317471524|ref|ZP_07930875.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
 gi|316901019|gb|EFV22982.1| DNA gyrase, subunit B [Anaerostipes sp. 3_2_56FAA]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 26/223 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAV-QRH 75
           E+++NS+D   A     +   +   G +  +  DNG G+            + M     H
Sbjct: 42  EIVDNSVDEFLAGHCDEITVTLKDDGTAVIE--DNGRGIPVGINEQTGLSAVEMVFTMLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  D    I + G  G     + A+S    +T+     Q+    +      K++   
Sbjct: 100 AGGKFGDGGYKI-SGGLHGVGASVVNALSTWLKVTV----KQDGNIYEECFERGKVTEPL 154

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            V  +         + F +P    F K+   +  +I + +   A   P++   +   +S 
Sbjct: 155 RVIGSCRKSETGTKIRF-LPDPEIFDKTY-FKAAMIRNRLHETAYLNPELKIHYINERSG 212

Query: 193 RYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQ 234
                           + ++  G+  +++ V    + N I  +
Sbjct: 213 EETEVLYHEPEGICAYVKKLNDGKHVLHDPVYYKREINGIEAE 255


>gi|294085071|ref|YP_003551831.1| two-component hybrid sensor and regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664646|gb|ADE39747.1| two-component hybrid sensor and regulator [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 429

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 30  LIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTS---EEIPMAVQRH 75
           L  NS +  ++++   I   G      I+DNG G+     + +  A + H
Sbjct: 358 LARNSANGGATKLHIDIWRAGHLGIIDISDNGHGIPKQRWDGLFQAFKSH 407


>gi|284165545|ref|YP_003403824.1| DNA gyrase B subunit [Haloterrigena turkmenica DSM 5511]
 gi|284015200|gb|ADB61151.1| DNA gyrase, B subunit [Haloterrigena turkmenica DSM 5511]
          Length = 644

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I   G     + D+G G+  +
Sbjct: 41 VYEVVDNSIDEALAGHCDDITVSINDDG--SVSVADDGRGIPVD 82


>gi|254787783|ref|YP_003075212.1| DNA topoisomerase IV subunit B [Teredinibacter turnerae T7901]
 gi|237684233|gb|ACR11497.1| DNA topoisomerase IV, B subunit [Teredinibacter turnerae T7901]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  + +++  +     +   + D+G GM  +
Sbjct: 30 RPNHLAQEVIDNSVDEALAGFARKIQVTLHKD--NSISVADDGRGMPVD 76


>gi|156071394|dbj|BAF75804.1| DNA gyrase subunit B [Bradyrhizobium canariense]
          Length = 277

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ ++     +   + D+G G+  +
Sbjct: 3  VYEVVDNAIDEALAGHATRVDVILNAD--NSVTVRDDGRGIPVD 44


>gi|19979595|dbj|BAB88753.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RV+ ++     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVDVILNAD--NSVTVRDDGRGIPVD 53


>gi|87121026|ref|ZP_01076918.1| DNA gyrase, B subunit [Marinomonas sp. MED121]
 gi|86163864|gb|EAQ65137.1| DNA gyrase, B subunit [Marinomonas sp. MED121]
          Length = 807

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         ++DNG G+  E
Sbjct: 43 EVVDNSIDEALAGHCDTINVTIHPD--ESITVSDNGRGIPVE 82


>gi|58698128|ref|ZP_00373051.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
          ananassae]
 gi|58535374|gb|EAL59450.1| DNA gyrase, B subunit [Wolbachia endosymbiont of Drosophila
          ananassae]
          Length = 271

 Score = 43.5 bits (101), Expect = 0.100,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+N++D   A    ++E  I   G     +TDNG G+ ++
Sbjct: 16 VYEVIDNAIDESLAGYCDKIEVSINKDG--SVSVTDNGRGIPTD 57


>gi|323141431|ref|ZP_08076321.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414087|gb|EFY04916.1| DNA gyrase, B subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 646

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S ++ +I     +   + DNG G+  +
Sbjct: 51 VYEVVDNSIDEALAGYCSDIKVIIHKD--NSITVIDNGRGIPVD 92


>gi|315940103|gb|ADU56230.1| DNA gyrase subunit B [Nocardia rhamnosiphila]
          Length = 505

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++RVE  + A GG    Q+ D+G G+ 
Sbjct: 17 EVVDNSVDEAMAGHATRVEVTLLADGG---VQVVDDGRGIP 54


>gi|308234055|ref|ZP_07664792.1| DNA gyrase, B subunit [Atopobium vaginae DSM 15829]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +  ++     +   + DNG G+  E
Sbjct: 44 EIVDNSVDEAMAGYCTSINVIVHPD--NSISVEDNGRGIPVE 83


>gi|296126354|ref|YP_003633606.1| hypothetical protein Bmur_1317 [Brachyspira murdochii DSM 12563]
 gi|296018170|gb|ADG71407.1| hypothetical protein Bmur_1317 [Brachyspira murdochii DSM 12563]
          Length = 625

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 26 AIKELIENSLDAESSRVETV---------IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          A+ ELI NS+ A ++ +E           I     +   I D+G G++  +    +    
Sbjct: 30 ALCELINNSIQASANNIEINMTSDSEGEMIKD-SITSLSIKDDGEGVSLSDFQKKILEIA 88

Query: 77 T 77
          T
Sbjct: 89 T 89


>gi|256393252|ref|YP_003114816.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256359478|gb|ACU72975.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 400

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 30  LIENSLD-AESS-RVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTS 78
           L++N++     + R+E  +   G++  +  +TD+G G    +     +R   S
Sbjct: 302 LVDNAISHTGPTGRIEISLRPAGRAIVELEVTDDGTGFDPADRDRIFERFAQS 354


>gi|296126733|ref|YP_003633985.1| hypothetical protein Bmur_1701 [Brachyspira murdochii DSM 12563]
 gi|296127297|ref|YP_003634549.1| hypothetical protein Bmur_2277 [Brachyspira murdochii DSM 12563]
 gi|296018549|gb|ADG71786.1| hypothetical protein Bmur_1701 [Brachyspira murdochii DSM 12563]
 gi|296019113|gb|ADG72350.1| hypothetical protein Bmur_2277 [Brachyspira murdochii DSM 12563]
          Length = 672

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 26 AIKELIENSLDAESSRVETV---------IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          A+ ELI NS+ A ++ +E           I     +   I D+G G++  +    +    
Sbjct: 30 ALCELINNSIQASANNIEINMTSDSEGEMIKD-SITSLSIKDDGEGVSLSDFQKKILEIA 88

Query: 77 T 77
          T
Sbjct: 89 T 89


>gi|328943452|ref|ZP_08240917.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae
          DSM 15829]
 gi|327491421|gb|EGF23195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Atopobium vaginae
          DSM 15829]
          Length = 650

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +  ++     +   + DNG G+  E
Sbjct: 46 EIVDNSVDEAMAGYCTSINVIVHPD--NSISVEDNGRGIPVE 85


>gi|225374474|ref|ZP_03751695.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans
          DSM 16841]
 gi|225213712|gb|EEG96066.1| hypothetical protein ROSEINA2194_00089 [Roseburia inulinivorans
          DSM 16841]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A +   +   +   G     + DNG G+ 
Sbjct: 40 EIVDNSVDEHLAGACDTIHVTLEKNG--SCTVEDNGRGVP 77


>gi|219684407|ref|ZP_03539351.1| DNA gyrase, B subunit [Borrelia garinii PBr]
 gi|219672396|gb|EED29449.1| DNA gyrase, B subunit [Borrelia garinii PBr]
          Length = 634

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    +++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIDVIINLD--NTITVIDNGRGIPTD 78


>gi|163753549|ref|ZP_02160672.1| two-component sensor histidine kinase (sensor protein AtoS) [Kordia
           algicida OT-1]
 gi|161325763|gb|EDP97089.1| two-component sensor histidine kinase (sensor protein AtoS) [Kordia
           algicida OT-1]
          Length = 485

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++ A S     R++  +          + DNG G+T E  P   +   T+K
Sbjct: 390 LVKNAIQAISEERTPRIDVRVFEHNESVMITVKDNGIGITKENEPKIFEPKFTTK 444


>gi|163782725|ref|ZP_02177721.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881846|gb|EDP75354.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 31  IENSLDAESSR--VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N++DA      V   +    G   +++ D G G+  EE+    +   T+K
Sbjct: 559 IDNAIDASPRNGKVSVRLLKENGSIVWRVEDEGPGI--EELEKVFKPFYTTK 608


>gi|125973057|ref|YP_001036967.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|256004560|ref|ZP_05429538.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281417252|ref|ZP_06248272.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125713282|gb|ABN51774.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|255991432|gb|EEU01536.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281408654|gb|EFB38912.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|316940722|gb|ADU74756.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 338

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPS 99
           R+          +  +ITDNG G+  E++P   +R    K  +     H+ G  G AL  
Sbjct: 253 RIVIKACENAIFTEIEITDNGPGIDREDLPHLFERFY--KGKNSGE--HSMGI-GLALAR 307

Query: 100 IGAVSHLTLMSRPPQNNTGAQIAISGEK 127
           +  VS    +     ++ GA+  +   K
Sbjct: 308 MIIVSQNGTIKAQNNHDGGAKFTVRFYK 335


>gi|47458936|ref|YP_015798.1| DNA gyrase subunit b [Mycoplasma mobile 163K]
 gi|47458264|gb|AAT27587.1| DNA gyrase subunit b [Mycoplasma mobile 163K]
          Length = 647

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +++V+  +   G +  +  DNG G+ ++
Sbjct: 48 EIVDNSIDEAMAGHANQVKITLNKNGYAIIE--DNGRGIPTD 87


>gi|77460760|ref|YP_350267.1| periplasmic sensor Signal transduction histidine kinase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384763|gb|ABA76276.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDA-ESSRV-ETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA ++  + E  + G    GK   ++ DNG G+ +E      +  
Sbjct: 523 TRLEQILVNLIGNALDAMQAQPLPELWLEGEEFNGKYRLRVRDNGHGIDAEARKHLFEPF 582

Query: 76  CTSK 79
            T+K
Sbjct: 583 FTTK 586


>gi|148253525|ref|YP_001238110.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146405698|gb|ABQ34204.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDA-ESS---RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
               I  L+EN++DA  S+   R+       G     +I DNG G+  + +    +   T
Sbjct: 351 LHQVIVNLVENAIDAMRSTEQPRLLVAAGRQGNEIVFRIADNGPGIDQDHLSHIFEPFFT 410

Query: 78  SK 79
           +K
Sbjct: 411 TK 412


>gi|323978898|gb|EGB73978.1| DNA topoisomerase IV [Escherichia coli TW10509]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDEAFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|323966559|gb|EGB61992.1| DNA topoisomerase IV [Escherichia coli M863]
 gi|327251816|gb|EGE63502.1| DNA topoisomerase IV, B subunit [Escherichia coli STEC_7v]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDEAFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|319898877|ref|YP_004158970.1| topoisomerase protein [Bartonella clarridgeiae 73]
 gi|319402841|emb|CBI76392.1| topoisomerase protein [Bartonella clarridgeiae 73]
          Length = 692

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P
Sbjct: 89  EIIDNAMDEAVAGYADLIDVSLDRQG--YLTVTDNGRGIPVENHP 131


>gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 597

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   ++  + V  +I   G      + D+G G+  E++P   +R  
Sbjct: 484 DRIEQVLTNLIDNAIRHTESGGT-VRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFY 542


>gi|269128940|ref|YP_003302310.1| histidine kinase [Thermomonospora curvata DSM 43183]
 gi|268313898|gb|ACZ00273.1| histidine kinase [Thermomonospora curvata DSM 43183]
          Length = 454

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 30  LIENSLDAES-----SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N LD  +     S++E  +    G+    +TD+G G+   +     +R  
Sbjct: 346 LLHNLLD-NAERYADSQIEVAVAREDGRLVCTVTDDGIGIPEADRERVFERFT 397


>gi|297581055|ref|ZP_06942980.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|297534881|gb|EFH73717.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 146 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 198

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 199 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 227


>gi|296122030|ref|YP_003629808.1| ATP-binding region ATPase domain protein [Planctomyces
          limnophilus DSM 3776]
 gi|296014370|gb|ADG67609.1| ATP-binding region ATPase domain protein [Planctomyces
          limnophilus DSM 3776]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 21/79 (26%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA-ESSR---------VETVIAGGGKS 52
          I  LSE + +          PS+ ++EL++NS+DA  + R         +E  + G G +
Sbjct: 17 IELLSEHLYS---------SPSVFVRELLQNSVDAISARRLIDSTHTGSIEIELTGEGTN 67

Query: 53 F--FQITDNGFGMTSEEIP 69
               ITD G G+  EEI 
Sbjct: 68 SPTIVITDTGIGLNLEEIE 86


>gi|292669300|ref|ZP_06602726.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
           ATCC 43541]
 gi|292649141|gb|EFF67113.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas noxia
           ATCC 43541]
          Length = 685

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     VE VI     +   +TDNG G+  +
Sbjct: 92  VYEVVDNSIDEALAGYCDNVEVVIHKD--NSITVTDNGRGIPVD 133


>gi|255746897|ref|ZP_05420842.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101]
 gi|262147220|ref|ZP_06028023.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1]
 gi|262168411|ref|ZP_06036108.1| topoisomerase IV subunit B [Vibrio cholerae RC27]
 gi|262189725|ref|ZP_06048086.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93]
 gi|255735299|gb|EET90699.1| topoisomerase IV subunit B [Vibrio cholera CIRS 101]
 gi|262023303|gb|EEY42007.1| topoisomerase IV subunit B [Vibrio cholerae RC27]
 gi|262031351|gb|EEY49962.1| topoisomerase IV subunit B [Vibrio cholerae INDRE 91/1]
 gi|262034393|gb|EEY52772.1| topoisomerase IV subunit B [Vibrio cholerae CT 5369-93]
          Length = 602

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 6   TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 63

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 64  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 121

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 122 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 174

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 175 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 203


>gi|229524416|ref|ZP_04413821.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426]
 gi|229337997|gb|EEO03014.1| topoisomerase IV subunit B [Vibrio cholerae bv. albensis VL426]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 146 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 198

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 199 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 227


>gi|254477683|ref|ZP_05091069.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. R11]
 gi|214031926|gb|EEB72761.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. R11]
          Length = 589

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      VE ++A G  +   + DNG G+  +E     +   T+K
Sbjct: 487 LLRNALDA--TKSVDDPEVEVLLAAGETATLSVRDNGVGI--KEFESLFEPFYTTK 538


>gi|187777165|ref|ZP_02993638.1| hypothetical protein CLOSPO_00710 [Clostridium sporogenes ATCC
           15579]
 gi|187774093|gb|EDU37895.1| hypothetical protein CLOSPO_00710 [Clostridium sporogenes ATCC
           15579]
          Length = 809

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 15/54 (27%)

Query: 26  AIKELIENSLDA-----------ESS---RVETVI-AGGGKSFFQITDNGFGMT 64
           A++ELI+NS+DA             +    +E    +  G  + ++ DNG GM 
Sbjct: 394 ALRELIQNSIDACLLRQKLSQRWGETYKPEIEVEFYSKNGDDYLKVKDNGVGMN 447


>gi|254291773|ref|ZP_04962558.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226]
 gi|150422285|gb|EDN14247.1| topoisomerase IV, subunit B [Vibrio cholerae AM-19226]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 146 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 198

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 199 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 227


>gi|153831107|ref|ZP_01983774.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39]
 gi|148873413|gb|EDL71548.1| topoisomerase IV, subunit B [Vibrio cholerae 623-39]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 146 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 198

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 199 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 227


>gi|153803593|ref|ZP_01958179.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MZO-3]
 gi|124120868|gb|EAY39611.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MZO-3]
          Length = 519

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 6   TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 63

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 64  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 121

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 122 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 174

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 175 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 203


>gi|15642428|ref|NP_232061.1| DNA topoisomerase IV subunit B [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591635|ref|ZP_01678879.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80]
 gi|147674220|ref|YP_001217932.1| DNA topoisomerase IV subunit B [Vibrio cholerae O395]
 gi|153214083|ref|ZP_01949217.1| topoisomerase IV, subunit B [Vibrio cholerae 1587]
 gi|153820156|ref|ZP_01972823.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457]
 gi|153827239|ref|ZP_01979906.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2]
 gi|227082552|ref|YP_002811103.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2]
 gi|229507509|ref|ZP_04397014.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286]
 gi|229512295|ref|ZP_04401774.1| topoisomerase IV subunit B [Vibrio cholerae B33]
 gi|229514057|ref|ZP_04403519.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21]
 gi|229519432|ref|ZP_04408875.1| topoisomerase IV subunit B [Vibrio cholerae RC9]
 gi|229521258|ref|ZP_04410678.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80]
 gi|229527037|ref|ZP_04416432.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)]
 gi|229607015|ref|YP_002877663.1| DNA topoisomerase IV subunit B [Vibrio cholerae MJ-1236]
 gi|254849555|ref|ZP_05238905.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|298500211|ref|ZP_07010016.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757]
 gi|9657006|gb|AAF95574.1| topoisomerase IV, subunit B [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121546506|gb|EAX56719.1| topoisomerase IV, subunit B [Vibrio cholerae 2740-80]
 gi|124115509|gb|EAY34329.1| topoisomerase IV, subunit B [Vibrio cholerae 1587]
 gi|126509296|gb|EAZ71890.1| topoisomerase IV, subunit B [Vibrio cholerae NCTC 8457]
 gi|146316103|gb|ABQ20642.1| topoisomerase IV, subunit B [Vibrio cholerae O395]
 gi|149738853|gb|EDM53189.1| topoisomerase IV, subunit B [Vibrio cholerae MZO-2]
 gi|227010440|gb|ACP06652.1| topoisomerase IV, subunit B [Vibrio cholerae M66-2]
 gi|227014323|gb|ACP10533.1| topoisomerase IV, subunit B [Vibrio cholerae O395]
 gi|229335434|gb|EEO00916.1| topoisomerase IV subunit B [Vibrio cholerae 12129(1)]
 gi|229341790|gb|EEO06792.1| topoisomerase IV subunit B [Vibrio cholerae TM 11079-80]
 gi|229344121|gb|EEO09096.1| topoisomerase IV subunit B [Vibrio cholerae RC9]
 gi|229349238|gb|EEO14195.1| topoisomerase IV subunit B [Vibrio cholerae TMA 21]
 gi|229352260|gb|EEO17201.1| topoisomerase IV subunit B [Vibrio cholerae B33]
 gi|229355014|gb|EEO19935.1| topoisomerase IV subunit B [Vibrio cholerae BX 330286]
 gi|229369670|gb|ACQ60093.1| topoisomerase IV subunit B [Vibrio cholerae MJ-1236]
 gi|254845260|gb|EET23674.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|297540904|gb|EFH76958.1| DNA topoisomerase IV, B subunit [Vibrio cholerae MAK 757]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 146 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 198

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 199 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 227


>gi|325521132|gb|EGD00038.1| two-component regulatory system sensor kinase protein [Burkholderia
           sp. TJI49]
          Length = 481

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   ++  G      + DNG G+  +E     +R  
Sbjct: 376 LIDNAIRYAGDRAVITVRVSRDGAQARLDVIDNGPGIPEDERDAVFERFH 425


>gi|323703937|ref|ZP_08115567.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531095|gb|EGB21004.1| DNA gyrase, B subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 636

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 28/94 (29%)

Query: 4  RKLSEKIINQIAAGEIIERPSIA-------------------IKELIENSLD---AE-SS 40
          +++++   +QI   +++E                        + E+++NS+D   A   +
Sbjct: 3  QQINKYSADQI---QVLEGLEAVRRRPGMYIGSTSSRGLHHLVYEVVDNSIDEALAGFCN 59

Query: 41 RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
          R+  VI     +   + DNG G+  +  P   + 
Sbjct: 60 RISVVIHKD--NSVTVEDNGRGIPVDLHPKVGKP 91


>gi|271968328|ref|YP_003342524.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511503|gb|ACZ89781.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
          43021]
          Length = 690

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A    R+E  +   G    ++ DNG G+  +
Sbjct: 46 EIVDNGVDEALAGYCDRIEVELHADG--SIEVRDNGRGIPVD 85


>gi|228990003|ref|ZP_04149976.1| hypothetical protein bpmyx0001_7690 [Bacillus pseudomycoides DSM
           12442]
 gi|228769669|gb|EEM18259.1| hypothetical protein bpmyx0001_7690 [Bacillus pseudomycoides DSM
           12442]
          Length = 448

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 17/74 (22%)

Query: 7   SEKIINQIAAGEII-------ERPSIAIKELIENSLDAESSRVET--VIAGGGKSFFQIT 57
            +  I  I +   +       E  +  +K  +       ++ +     I         I 
Sbjct: 326 PDDDIAAIDSHTAVALYRIVQESLTNVVKHTV-------ATEIVINMEIKDCSIEL-SIH 377

Query: 58  DNGFGMTSEEIPMA 71
           DNG G+   +   A
Sbjct: 378 DNGHGIRETDFEKA 391


>gi|119471534|ref|ZP_01613948.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Alteromonadales bacterium TW-7]
 gi|119445477|gb|EAW26763.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Alteromonadales bacterium TW-7]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 22  RP---SIAIKELIENSLD-A----ESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMA 71
           RP   S  I+ LI N+L+ A    +S  ++  +     G     ++D+G G+  ++  + 
Sbjct: 522 RPGIISQVIENLIMNALNHAFEENQSGEIDIKVEKNDKGHINISVSDSGCGINQQQQSVI 581

Query: 72  VQRHCTS 78
            +   TS
Sbjct: 582 FEPFHTS 588


>gi|92115637|ref|YP_575366.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14]
 gi|91798531|gb|ABE60906.1| DNA gyrase subunit B [Nitrobacter hamburgensis X14]
          Length = 813

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++     +   + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATRVEVILNAD--NSVTVRDDGRGIPVD 96


>gi|82414755|gb|AAI10101.1| Zgc:152774 protein [Danio rerio]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 23 PSIAIKELIENSLDAE--SSRVETVIAGGGKSFFQITD--------NGFGMTSEEIPMAV 72
          P  A+ ELI+N+ D    +  +   +         + D        NG GMT  ++   +
Sbjct: 29 PFSAVAELIDNASDPGVTAKNIWIDV-------VTVRDQLCLSFTDNGSGMTPSKLHKML 81

Query: 73 QRHCTSK 79
              T K
Sbjct: 82 SFGFTEK 88


>gi|19979597|dbj|BAB88754.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979599|dbj|BAB88755.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++RVE ++     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHATRVEVILNAD--NSVTVRDDGRGIPVD 53


>gi|295136271|ref|YP_003586947.1| two-component system sensor histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294984286|gb|ADF54751.1| two-component system sensor histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 387

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA     ++   I    K  F  + D G G+      +  +   T+K
Sbjct: 288 LVKNAIDAMRGKGKITIEIRQNDKQVFVYVHDTGKGIDKNRFKIIFEPGQTTK 340


>gi|257415199|ref|ZP_05592193.1| predicted protein [Enterococcus faecalis AR01/DG]
 gi|257157027|gb|EEU86987.1| predicted protein [Enterococcus faecalis ARO1/DG]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 11  INQIAAGEIIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           I +I    +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 542 IEKIIPQHVIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 596


>gi|313126511|ref|YP_004036781.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
 gi|312292876|gb|ADQ67336.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
          Length = 648

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 14  IAAGEIIERPSIAIKELIENSL------DAESSRVETVIAGGGKSF-FQITDNGFGMTSE 66
           I AG         + ELIEN++      D     V   +   G+     ++DNG G+   
Sbjct: 522 ICAG---SELKQMVTELIENAIKHNLSND---PHVVIEVNNNGEWIDIVVSDNGPGIDEM 575

Query: 67  EIPMAVQ 73
           E  +  +
Sbjct: 576 EAKVVSE 582


>gi|183219432|ref|YP_001837428.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
          'Patoc 1 (Paris)']
 gi|189909578|ref|YP_001961133.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
          'Patoc 1 (Ames)']
 gi|167774254|gb|ABZ92555.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
          'Patoc 1 (Ames)']
 gi|167777854|gb|ABZ96152.1| DNA gyrase subunit B [Leptospira biflexa serovar Patoc strain
          'Patoc 1 (Paris)']
          Length = 639

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + ++  I    ++  ++ DNG G+ 
Sbjct: 44 VYEVVDNSVDEAMAGHCTEIDVRILP--ENIIEVRDNGRGIP 83


>gi|197118451|ref|YP_002138878.1| GAF/PAS/PAC domain-containing heme-binding site [Geobacter
           bemidjiensis Bem]
 gi|197087811|gb|ACH39082.1| sensor histidine kinase response regulator, PAS, PAS, GAF, PAS and
           PAC domain-containing, putative heme-binding site
           [Geobacter bemidjiensis Bem]
          Length = 1184

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           L EN LD         +  G   + ++TDNG GMT E +    +   T+K +
Sbjct: 949 LAENWLD-------VPLHEGRYVYLEVTDNGCGMTKETLDRIFEPFFTTKFT 993


>gi|86157053|ref|YP_463838.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773564|gb|ABC80401.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 526

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 30  LIENSLDA-----ESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+  A      + R+E    +  GG  F  + D+G G+ + E+        T+K
Sbjct: 424 LLRNAAQALGDGRGA-RIEVSCGVEDGGAWF-AVGDDGPGIPAAELERIFLPFHTTK 478


>gi|120598247|ref|YP_962821.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           W3-18-1]
 gi|120558340|gb|ABM24267.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           W3-18-1]
          Length = 360

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NSL+A +S++  +          ++ DNG G+ ++     ++   T+K
Sbjct: 249 LSSAINNLVINSLEAGASQIRILATESKDQLMLEVIDNGKGLDAKMQQKVMEPFFTTK 306


>gi|146293675|ref|YP_001184099.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           putrefaciens CN-32]
 gi|145565365|gb|ABP76300.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           putrefaciens CN-32]
          Length = 360

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            S AI  L+ NSL+A +S++  +          ++ DNG G+ ++     ++   T+K
Sbjct: 249 LSSAINNLVINSLEAGASQIRILATESKDQLMLEVIDNGKGLDAKMQQKVMEPFFTTK 306


>gi|326561292|gb|EGE11651.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 46P47B1]
 gi|326567837|gb|EGE17941.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 12P80B1]
 gi|326573752|gb|EGE23710.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis O35E]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   A  +  +  ++   G     + D+G GM ++         + 
Sbjct: 30  RPNHLAQEVIDNSVDEALAGFARHIIVILHKDG--SLSVEDDGRGMPTDIHPEFNQSGVE 87

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM 109
           + + R H   K S +   + + G  G  +  + A+S  + + 
Sbjct: 88  LILTRLHAGGKFSTENYQV-SGGLHGVGISVVNALSTRVEVT 128


>gi|326559446|gb|EGE09869.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 7169]
 gi|326565180|gb|EGE15371.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 103P14B1]
 gi|326568161|gb|EGE18243.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC8]
 gi|326572201|gb|EGE22197.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis BC7]
 gi|326572804|gb|EGE22789.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis CO72]
 gi|326574623|gb|EGE24559.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis 101P30B1]
          Length = 629

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   A  +  +  ++   G     + D+G GM ++         + 
Sbjct: 30  RPNHLAQEVIDNSVDEALAGFARHIIVILHKDG--SLSVEDDGRGMPTDIHPEFNQSGVE 87

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM 109
           + + R H   K S +   + + G  G  +  + A+S  + + 
Sbjct: 88  LILTRLHAGGKFSTENYQV-SGGLHGVGISVVNALSTRVEVT 128


>gi|325204644|gb|ADZ00098.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis
          M01-240355]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|325201661|gb|ADY97115.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis
          M01-240149]
 gi|325208604|gb|ADZ04056.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis NZ-05/33]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|325144924|gb|EGC67208.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis
          M01-240013]
 gi|325205601|gb|ADZ01054.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis
          M04-240196]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|325142847|gb|EGC65215.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis 961-5945]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|325136669|gb|EGC59269.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M0579]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|325130728|gb|EGC53466.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis OX99.30304]
          Length = 158

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|325127116|gb|EGC50071.1| DNA topoisomerase 4 subunit B [Neisseria meningitidis N1568]
          Length = 562

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|308173798|ref|YP_003920503.1| YvrG [Bacillus amyloliquefaciens DSM 7]
 gi|307606662|emb|CBI43033.1| YvrG [Bacillus amyloliquefaciens DSM 7]
 gi|328553276|gb|AEB23768.1| YvrG [Bacillus amyloliquefaciens TA208]
 gi|328911938|gb|AEB63534.1| Sensor histidine kinase yvrG [Bacillus amyloliquefaciens LL3]
          Length = 466

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++   +    ++   I DNG G+  EE+     R+ 
Sbjct: 384 KIVVQLEQKERTHVTIKDNGKGIEEEELEKVFDRYY 419


>gi|296114068|ref|YP_003628006.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis RH4]
 gi|295921762|gb|ADG62113.1| DNA topoisomerase IV subunit B [Moraxella catarrhalis RH4]
          Length = 601

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+   +E+I+NS+D   A  +  +  ++   G     + D+G GM ++         + 
Sbjct: 2   RPNHLAQEVIDNSVDEALAGFARHIIVILHKDG--SLSVEDDGRGMPTDIHPEFNQSGVE 59

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM 109
           + + R H   K S +   + + G  G  +  + A+S  + + 
Sbjct: 60  LILTRLHAGGKFSTENYQV-SGGLHGVGISVVNALSTRVEVT 100


>gi|261392093|emb|CAX49590.1| topoisomerase IV subunit B [Neisseria meningitidis 8013]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|254673078|emb|CBA07750.1| topoisomerase IV subunit B [Neisseria meningitidis alpha275]
          Length = 578

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|254805438|ref|YP_003083659.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14]
 gi|304386839|ref|ZP_07369103.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis
          ATCC 13091]
 gi|254668980|emb|CBA07308.1| topoisomerase IV subunit B [Neisseria meningitidis alpha14]
 gi|254671649|emb|CBA09375.1| topoisomerase IV subunit B [Neisseria meningitidis alpha153]
 gi|304339093|gb|EFM05183.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Neisseria meningitidis
          ATCC 13091]
 gi|308389804|gb|ADO32124.1| topoisomerase IV subunit B [Neisseria meningitidis alpha710]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|254294168|ref|YP_003060191.1| DNA topoisomerase IV subunit B [Hirschia baltica ATCC 49814]
 gi|254042699|gb|ACT59494.1| DNA topoisomerase IV, B subunit [Hirschia baltica ATCC 49814]
          Length = 653

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +SR++  +   G  +  + D+G G+  +
Sbjct: 48 EILDNSMDEAVAGHASRIDVHLRADG--YLSVRDDGRGIPVD 87


>gi|229495887|ref|ZP_04389613.1| sensor histidine kinase [Porphyromonas endodontalis ATCC 35406]
 gi|229317200|gb|EEN83107.1| sensor histidine kinase [Porphyromonas endodontalis ATCC 35406]
          Length = 382

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L++N++DA      +   I   G  +   ITD G G+             T+K
Sbjct: 282 VIENLVKNAVDAMQGKGEITIAIERRGHVALIDITDTGRGIAPRHRRRIFNPGFTTK 338


>gi|261380858|ref|ZP_05985431.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703]
 gi|284796328|gb|EFC51675.1| DNA topoisomerase IV, B subunit [Neisseria subflava NJ9703]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|219668703|ref|YP_002459138.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense
          DCB-2]
 gi|219538963|gb|ACL20702.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfitobacterium hafniense
          DCB-2]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-AES---SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D A +   +R+E  +   G     + DNG G+  +
Sbjct: 43 EIIDNAIDEAGAGFCTRIEVTLNPDG--SLTVLDNGRGVPID 82


>gi|121635323|ref|YP_975568.1| DNA topoisomerase IV subunit B [Neisseria meningitidis FAM18]
 gi|161870530|ref|YP_001599702.1| DNA topoisomerase IV subunit B [Neisseria meningitidis 053442]
 gi|120867029|emb|CAM10792.1| topoisomerase IV subunit B [Neisseria meningitidis FAM18]
 gi|161596083|gb|ABX73743.1| topoisomerase IV subunit B [Neisseria meningitidis 053442]
 gi|325132822|gb|EGC55502.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M6190]
 gi|325134784|gb|EGC57421.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis M13399]
 gi|325138725|gb|EGC61277.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis ES14902]
 gi|325198780|gb|ADY94236.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis G2136]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|159037300|ref|YP_001536553.1| DNA gyrase subunit B [Salinispora arenicola CNS-205]
 gi|157916135|gb|ABV97562.1| DNA gyrase subunit B domain protein [Salinispora arenicola CNS-205]
          Length = 730

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS D   A  ++ +E  +   G    Q+ D+G G+ ++
Sbjct: 88  VNEILDNSTDEGVAGHATSIEVTLHADG--SVQVDDDGRGIPTD 129


>gi|145594225|ref|YP_001158522.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Salinispora tropica CNB-440]
 gi|145303562|gb|ABP54144.1| DNA topoisomerase, type IIA, subunit B, region 2 domain protein
           [Salinispora tropica CNB-440]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS D   A  ++ +E  +   G    Q+ D+G G+ ++
Sbjct: 60  VNEILDNSTDEGVAGHATSIEVTLHADG--SVQVDDDGRGIPTD 101


>gi|89894290|ref|YP_517777.1| hypothetical protein DSY1544 [Desulfitobacterium hafniense Y51]
 gi|89333738|dbj|BAE83333.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-AES---SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D A +   +R+E  +   G     + DNG G+  +
Sbjct: 43 EIIDNAIDEAGAGFCTRIEVTLNPDG--SLTVLDNGRGVPID 82


>gi|218768702|ref|YP_002343214.1| DNA topoisomerase IV subunit B [Neisseria meningitidis Z2491]
 gi|121052710|emb|CAM09053.1| topoisomerase IV subunit B [Neisseria meningitidis Z2491]
 gi|319410935|emb|CBY91330.1| topoisomerase IV subunit B [Neisseria meningitidis WUE 2594]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVRDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|119385688|ref|YP_916743.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119376283|gb|ABL71047.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 597

 Score = 43.5 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDA--ESS--RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    I  L+ N++DA        +E  ++ G  +F  + DNG G++  ++    +   T
Sbjct: 479 RLEQIIINLLRNAVDAIKGVRDPAIEITVSSGSHAFLSVRDNGPGVS--DLENLFEPFFT 536

Query: 78  SK 79
           +K
Sbjct: 537 TK 538


>gi|300705313|ref|YP_003746916.1| sensor histidine kinase, transcriptional regulator of
           c4-dicarboxylate transport [Ralstonia solanacearum
           CFBP2957]
 gi|299072977|emb|CBJ44334.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           CFBP2957]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 15/63 (23%)

Query: 30  LIENSLDA---------ESSRVETVI---AGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           LI N+LDA            R++  I    G        + DNG G++++ +P   +   
Sbjct: 554 LIGNALDAITANDLSRPG--RIDIDIGPADGAPAQLCIVVRDNGPGISADAMPHLFEPFF 611

Query: 77  TSK 79
           T+K
Sbjct: 612 TTK 614


>gi|255525896|ref|ZP_05392823.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255510390|gb|EET86703.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 308

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L++N L  + +S +E  + +   ++   ITDNG G++ E+I    +R
Sbjct: 212 LVQNVLTHSNASHIEVSVLSKLNQAEICITDNGKGISKEDIKHIFER 258


>gi|224827188|ref|ZP_03700283.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002]
 gi|224600581|gb|EEG06769.1| DNA gyrase, B subunit [Lutiella nitroferrum 2002]
          Length = 796

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  ++  I     +   + DNG G+ ++
Sbjct: 43 EVLDNAIDEALAGHADTIKVTINPD--NSISVEDNGRGIPTD 82


>gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 1048

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 29/90 (32%)

Query: 19  IIERPSI--------------AIKELIENSLDA--ESSRVETVIAG-------------G 49
           ++ R +               A+  L+ N+ DA   +  +                   G
Sbjct: 847 VVTRLAADLWPAVADPHRIELAVLNLVTNARDALQGAGEIRIETENLPAGAPRPGTVPAG 906

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                 + D G GM+ + +  A +   T+K
Sbjct: 907 DLVVLTVADTGDGMSPDVLARAFEPFFTTK 936


>gi|94308948|ref|YP_582158.1| DNA gyrase subunit B [Cupriavidus metallidurans CH34]
 gi|93352800|gb|ABF06889.1| DNA gyrase, subunit B [Cupriavidus metallidurans CH34]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + ++  I     +   I DNG G+   
Sbjct: 50 EVLDNSIDEALAGYCTEIQVTIHSD--NSISIVDNGRGIPPA 89


>gi|332980610|ref|YP_004462051.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON]
 gi|332698288|gb|AEE95229.1| DNA gyrase subunit B [Mahella australiensis 50-1 BON]
          Length = 633

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 15/67 (22%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAV-Q 73
           + E+++NS+D   A     ++ +I     +   + DNG G+            + +A+  
Sbjct: 41  VYEVVDNSIDEVLAGFCDTIKIIIHKD--NSITVEDNGRGIPVGIHPKTGRSAVEVALTM 98

Query: 74  RHCTSKI 80
            H  SK 
Sbjct: 99  LHAGSKF 105


>gi|327403490|ref|YP_004344328.1| integral membrane sensor signal transduction histidine kinase
            [Fluviicola taffensis DSM 16823]
 gi|327318998|gb|AEA43490.1| integral membrane sensor signal transduction histidine kinase
            [Fluviicola taffensis DSM 16823]
          Length = 1205

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 24/83 (28%)

Query: 1    MKIRKLSEKIINQIAAGEIIERPSIAIKE----LIENSLDAESSRVETVIAGGGKSFFQI 56
            M +R L+  + N I A       +    E    L   S+DA    V          F ++
Sbjct: 1100 MILRVLNNLVSNGIQA-------ASITSESHIGL---SIDANEDFV----------FIRV 1139

Query: 57   TDNGFGMTSEEIPMAVQRHCTSK 79
             DNG G+  ++I    + + T+K
Sbjct: 1140 RDNGTGIAEDQIQTIFEPYFTTK 1162


>gi|326202202|ref|ZP_08192072.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987997|gb|EGD48823.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 30  LIENSLDAESS--RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++ A S    +        G+    + DNG GMT E +    +   
Sbjct: 366 LLDNAIRACSKGGHIIVNAAKEAGRKTISVRDNGKGMTPEVLAQITEPFY 415


>gi|271968080|ref|YP_003342276.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511255|gb|ACZ89533.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 447

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 9   KIINQIAAGEIIE----RPSIAIKELIENSLDAES-SRVETVI-AGGGKSFFQITDNGFG 62
           +++ ++  G ++E    R +  +  L++N+ +  + S+V   +    G +  ++ D+G G
Sbjct: 325 EVVRELKPGLVVEGDRLRLARLLTNLMDNA-ERHAVSQVTVSVTEEDGTAVLEVLDDGAG 383

Query: 63  MTSEEIPMAVQRHC 76
           +  E+  +   R  
Sbjct: 384 IAPEQREVVFHRFT 397


>gi|205375080|ref|ZP_03227871.1| histidine kinase [Bacillus coahuilensis m4-4]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 30  LIENSL--DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           LIEN++        +  ++   G++   ++TD G G+  EE      R  
Sbjct: 244 LIENAIRYSNNGRTITIIVEDSGRATIFRVTDEGEGIPFEEQKNIFDRFY 293


>gi|216263495|ref|ZP_03435490.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1]
 gi|215980339|gb|EEC21160.1| DNA gyrase, B subunit [Borrelia afzelii ACA-1]
          Length = 634

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVIDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 78


>gi|111115263|ref|YP_709881.1| DNA gyrase, subunit B [Borrelia afzelii PKo]
 gi|110890537|gb|ABH01705.1| DNA gyrase, subunit B [Borrelia afzelii PKo]
          Length = 634

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A    R++ +I     +   + DNG G+ ++
Sbjct: 37 VYEVIDNSIDEALAGFCDRIDVIINLD--NTITVIDNGRGIPTD 78


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1131

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30   LIENSLDA----ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            L++NSLDA     + +V    I  G      I D+G G+ +       +   T+K
Sbjct: 1029 LLQNSLDAVDEGGAIKVRISTIRNGSAVRVTIADSGKGIEANFRERIFEPFFTTK 1083



 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 42  VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +   +  GG      + D G G+   E+P   +R  
Sbjct: 506 ITIALRDGGDGVAVSVRDTGVGIPPNELPRVFERFH 541


>gi|319790160|ref|YP_004151793.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1]
 gi|317114662|gb|ADU97152.1| DNA gyrase, B subunit [Thermovibrio ammonificans HB-1]
          Length = 804

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 44 EVVDNSVDEALAGYCTEIEVTIHPD--NSITVADNGRGIPVD 83


>gi|253686724|ref|YP_003015914.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753302|gb|ACT11378.1| DNA topoisomerase IV, B subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 631

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 75/211 (35%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S       + G  G  +  + A+S  + +  +      +        
Sbjct: 89  ELILCRLHAGGKFSGKNYQ-FSGGLHGVGISVVNALSTRVEVTVKRDGQVYDIAFANGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + ++        N GT V              F  S +   + +T +++  A+  P V 
Sbjct: 148 VQDLTVTGTCGRRNTGTRVHFW-------PDEKFFDSARFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F      + +        N    E ++ +
Sbjct: 201 IIFKDKVNNTEQRWCYQDGLNDYLCEAVNGL 231


>gi|167752021|ref|ZP_02424148.1| hypothetical protein ALIPUT_00263 [Alistipes putredinis DSM
          17216]
 gi|167660262|gb|EDS04392.1| hypothetical protein ALIPUT_00263 [Alistipes putredinis DSM
          17216]
          Length = 624

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
          IKE+++NS+D     A   +++  +         + D G G+  + +  AV 
Sbjct: 52 IKEVVDNSVDEFIMGAG-KQIDVTVED---DIVTVRDYGRGIPLKSLAAAVS 99


>gi|11497642|ref|NP_068862.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
 gi|2650629|gb|AAB91205.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
          Length = 323

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 35/99 (35%)

Query: 14  IAAGEIIE-RPSIAIKE--------------------------------LIENSLDAE-S 39
           + +GE++E R    +KE                                L+ENSL    S
Sbjct: 182 LTSGELVEIRLGDVVKEVAEDFSVRGLKVRVEGDATVLADKAIYSVLTNLLENSLKHGKS 241

Query: 40  SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           + VE  +   G  +   + D+G G+  E I    +   T
Sbjct: 242 TEVEIRVEKRGNFAVMVVRDDGKGLPEEVIDRIFEEGFT 280


>gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 597

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   ++  + V  +I   G      + D+G G+  E++P   +R  
Sbjct: 484 DRIEQVLTNLIDNAIRHTESGGT-VRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFY 542


>gi|31071471|dbj|BAC76784.1| DNA gyrase B subunit [Anabaena planctonica]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  I   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSVDEALAGYCTHVEVDINADG--SVTVTDDGRGIPTD 51


>gi|332664690|ref|YP_004447478.1| DNA gyrase subunit B [Haliscomenobacter hydrossis DSM 1100]
 gi|332333504|gb|AEE50605.1| DNA gyrase, B subunit [Haliscomenobacter hydrossis DSM 1100]
          Length = 655

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   ++++ ++     +   + D+G G+ 
Sbjct: 57 EVVDNSIDEHLAGFCTQIDVIVHED--NSVTVKDDGRGIP 94


>gi|329905000|ref|ZP_08273972.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547791|gb|EGF32563.1| Signal transduction histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 221

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 24  SIAIKELIENSLDA-ESSRVETVIAGGGK---SFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +  +  LI N++ A  ++R    I  G     ++ ++ D+G G++++          T+K
Sbjct: 116 NQVVMNLIINAVQAMGAARGTITIRTGSTPETAWIEVADDGCGISADNSARIFDPFFTTK 175


>gi|298491608|ref|YP_003721785.1| DNA gyrase subunit B ['Nostoc azollae' 0708]
 gi|298233526|gb|ADI64662.1| DNA gyrase, B subunit ['Nostoc azollae' 0708]
          Length = 645

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  I   G     +TD+G G+  +
Sbjct: 39 VYEVVDNSVDEALAGHCTHVEVDINADG--SVTVTDDGRGIPVD 80


>gi|257452986|ref|ZP_05618285.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|257466634|ref|ZP_05630945.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917788|ref|ZP_07914028.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059526|ref|ZP_07924011.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|313685202|gb|EFS22037.1| DNA gyrase subunit B [Fusobacterium sp. 3_1_5R]
 gi|313691663|gb|EFS28498.1| DNA gyrase subunit B [Fusobacterium gonidiaformans ATCC 25563]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 31/247 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   + +   I        Q+ DNG G+  +          EI + V  
Sbjct: 40  EVVDNSVDEALAGYCNTITVSILPDNI--IQVEDNGRGIPVDIHPKYGKSALEIVLTVL- 96

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAI----SGEKIS 129
           H   K  +D   + + G  G  +  + A+S    +  +   N    +          KI 
Sbjct: 97  HAGGKFENDNYKV-SGGLHGVGISVVNALSEWTEIKVKRDGNVYYQKYLRGKPIEDVKII 155

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           S        GT V  +             ++   E  ++   ++ +A     +       
Sbjct: 156 SSLEAGDTTGTTVTFK-------PDAEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDC 208

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
           ++   K       G   + + +V  E+ +  + +++ +     +       T+    +  
Sbjct: 209 RNEIGKKEKFQFEGGISDFLKEVTHENQVLLSKQIHVEGQAEQVGVDIA-FTYTTSQSET 267

Query: 250 FYVFING 256
            Y F+N 
Sbjct: 268 IYSFVNN 274


>gi|194277431|gb|ACF39381.1| GyrB [Streptomyces sp. FXJ52]
          Length = 272

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  + +++  I A GG    ++ D+G G+ 
Sbjct: 2  EVVDNSVDEALAGHADKIDVTILADGG---VRVVDDGRGIP 39


>gi|189464618|ref|ZP_03013403.1| hypothetical protein BACINT_00961 [Bacteroides intestinalis DSM
           17393]
 gi|189436892|gb|EDV05877.1| hypothetical protein BACINT_00961 [Bacteroides intestinalis DSM
           17393]
          Length = 623

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 23/95 (24%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 20  IRHLDDMEHIRVRSGMYIGRLGDGTQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEISIE 78

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
                   + D G G+   ++  AV     SK++ 
Sbjct: 79  EN--LRVSVRDYGRGIPQGKLIEAV-----SKLNT 106


>gi|62202673|gb|AAH93193.1| Zgc:152774 protein [Danio rerio]
          Length = 422

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 23 PSIAIKELIENSLDAE--SSRVETVIAGGGKSFFQITD--------NGFGMTSEEIPMAV 72
          P  A+ ELI+N+ D    +  +   +         + D        NG GMT  ++   +
Sbjct: 29 PFSAVAELIDNASDPGVTAKNIWIDV-------VTVRDQLCLSFTDNGSGMTPSKLHKML 81

Query: 73 QRHCTSK 79
              T K
Sbjct: 82 SFGFTEK 88


>gi|23978223|dbj|BAC21109.1| DNA gyrase B subunit [Anabaena cylindrica]
          Length = 396

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + VE  I   G     +TD+G G+  +
Sbjct: 10 VYEVVDNSVDEALAGHCTHVEVDINADG--SVTVTDDGRGIPVD 51


>gi|85713135|ref|ZP_01044168.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145]
 gi|85693051|gb|EAQ31016.1| DNA topoisomerase IV subunit B [Idiomarina baltica OS145]
          Length = 630

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 29/209 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  +  V+        ++TD+G GM      EE    + 
Sbjct: 30  RPNHLGQEVIDNSVDEALAGHAKTITVVLHKD--QSLEVTDDGRGMPVDIHPEEKIPGVE 87

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           + + + H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 88  LIMSKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEITIRRDSQVYEMAFENGDKV 146

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--V 182
            ++         N GT V              +  S +     +T ++R  A+  P   +
Sbjct: 147 SELDVTGTCGKRNTGTRVHFW-------PDEQYFDSSKFSVLKLTHLLRAKAVLCPGLTI 199

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            F                      E + +
Sbjct: 200 RFINHVDGEETSWFYEDGLTDYLREAVEE 228


>gi|46202607|ref|ZP_00052925.2| COG4251: Bacteriophytochrome (light-regulated signal transduction
           histidine kinase) [Magnetospirillum magnetotacticum
           MS-1]
          Length = 483

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 30  LIENSL-----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAV 72
           LI N+L     D E+ RV       GG+  F++ DNG G+  E      
Sbjct: 376 LIGNALKYRRPD-EAPRVSVECEDLGGEWLFRVRDNGIGIPPEHAERVF 423


>gi|319785624|ref|YP_004145099.1| DNA gyrase subunit beta [Pseudoxanthomonas suwonensis 11-1]
 gi|317464136|gb|ADV25868.1| DNA gyrase, B subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 811

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ V   I   G     ++DNG G+  +
Sbjct: 50 EVVDNSIDEALAGHANEVIVRILEDG--SVAVSDNGRGIPVD 89


>gi|284793877|pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
           With Inhibitor
 gi|284793878|pdb|3FV5|B Chain B, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed
           With Inhibitor
          Length = 201

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 67/189 (35%), Gaps = 21/189 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 16  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 73

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 74  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 132

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
                                +        F  S +   + +T V++  A+  P V  TF
Sbjct: 133 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 188

Query: 187 STIKSNRYK 195
               +N  +
Sbjct: 189 KDEINNTEQ 197


>gi|260437693|ref|ZP_05791509.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809919|gb|EFF69124.1| DNA gyrase, B subunit [Butyrivibrio crossotus DSM 2876]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 40 VYEIVDNSVDEALAGFCTEIFVQINED--NSITVIDNGRGIP 79


>gi|253687404|ref|YP_003016594.1| PAS/PAC sensor signal transduction histidine kinase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753982|gb|ACT12058.1| PAS/PAC sensor signal transduction histidine kinase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 440

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 21  ERPSIAIKELIENSLD---AESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E+   A+  L+ N+++   A  +R+E     I  G  + FQ++DNG G+ +E +P   +R
Sbjct: 316 EQLRSAVSNLVYNAINHTPAG-TRIEVCWQKIPQG--AQFQVSDNGPGIAAEHLPRLTER 372

Query: 75  HC 76
             
Sbjct: 373 FY 374


>gi|256829610|ref|YP_003158338.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578786|gb|ACU89922.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 793

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFG 62
           +L + +IN      I++  + A++    N   A +  +   I       S  +I DNG G
Sbjct: 684 QLEQAVIN------IVDNAARAVR---NN---AGAKNIALRIVCEEDRLSL-RIADNGPG 730

Query: 63  MTSEEIPMAVQRHCT 77
           +T  +         T
Sbjct: 731 ITPADRERIFDPFYT 745


>gi|313126396|ref|YP_004036666.1| DNA gyrase subunit b [Halogeometricum borinquense DSM 11551]
 gi|312292761|gb|ADQ67221.1| DNA gyrase subunit B [Halogeometricum borinquense DSM 11551]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   +   G     +TDNG G+  +
Sbjct: 41 VYEVVDNSIDEALAGYCDEIGVSVHEDG--SVSVTDNGRGIPVD 82


>gi|260588813|ref|ZP_05854726.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
 gi|260540592|gb|EEX21161.1| DNA gyrase, B subunit [Blautia hansenii DSM 20583]
          Length = 641

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     ++  I     +   + DNG G+ 
Sbjct: 43 VYEIVDNAVDEALAGYCDTIDVSINED--NSITVIDNGRGIP 82


>gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 597

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  LI+N++   ++  + V  +I   G      + D+G G+  E++P   +R  
Sbjct: 484 DRIEQVLTNLIDNAIRHTESGGT-VRLIIEPSGDGVTIHVQDSGSGIPEEDLPFVFERFY 542


>gi|188590798|ref|YP_001795398.1| DNA gyrase subunit b [Cupriavidus taiwanensis LMG 19424]
 gi|170937692|emb|CAP62676.1| DNA gyrase, subunit B (type II topoisomerase) [Cupriavidus
          taiwanensis LMG 19424]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + ++  I     +   I DNG G+  
Sbjct: 50 EVLDNSIDEALAGYCTEIQVTIHSD--NSISIVDNGRGIPP 88


>gi|241554111|ref|YP_002979324.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863417|gb|ACS61079.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 340

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMT 64
           L ++     AAG +    +       +N+L   ++ +E  ++     +   + D+G G++
Sbjct: 231 LPQE-----AAGIVFANLA-------DNALQHGATLLEIRVSTDARTAVILVRDDGSGIS 278

Query: 65  SEEIPMAVQRHC 76
                   Q   
Sbjct: 279 EVNRQRIFQPFY 290


>gi|113866034|ref|YP_724523.1| DNA gyrase subunit B [Ralstonia eutropha H16]
 gi|113524810|emb|CAJ91155.1| DNA gyrase subunit B [Ralstonia eutropha H16]
          Length = 841

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + ++  I     +   I DNG G+  
Sbjct: 50 EVLDNSIDEALAGYCTEIQVTIHSD--NSISIVDNGRGIPP 88


>gi|19909711|dbj|BAB87051.1| DNA gyrase subunit B [Cupriavidus necator]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 6/41 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          E+++NS+D   A   + ++  I     +   I DNG G+  
Sbjct: 10 EVLDNSIDEALAGYCTEIQVTIHSD--NSISIVDNGRGIPP 48


>gi|313894414|ref|ZP_07827979.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441238|gb|EFR59665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGM 63
           ++   +  ++ A E+      AI  L++N++   ++ ++             ++DNG G+
Sbjct: 314 QIDPNL--RMTAHEV--SLRRAITNLVDNAIKFTNTTIDISAKLVNHELVITVSDNGIGI 369

Query: 64  TSEEIPMAVQR 74
             E +     R
Sbjct: 370 EQENLEHIWDR 380


>gi|300853957|ref|YP_003778941.1| putative two component sensor kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300434072|gb|ADK13839.1| predicted two component sensor kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP-SI 100
            +   + DNG G+  EE+    +R    K++    +I      G AL  SI
Sbjct: 341 CTRIIVKDNGEGIPKEELKHVFERFYKGKMNKSTESIGI----GLALSKSI 387


>gi|298290587|ref|YP_003692526.1| DNA gyrase subunit beta [Starkeya novella DSM 506]
 gi|296927098|gb|ADH87907.1| DNA gyrase, B subunit [Starkeya novella DSM 506]
          Length = 812

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 52 VYEVVDNAIDEALAGYADEVTVTLNADG--SVTVTDNGRGIPTD 93


>gi|262273133|ref|ZP_06050950.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
 gi|262222889|gb|EEY74197.1| DNA gyrase subunit B [Grimontia hollisae CIP 101886]
          Length = 805

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 75/248 (30%), Gaps = 26/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I   G     + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCNDIVVTIHEDG--SVSVKDDGRGIPVDIHEEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L      +       +   +       
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELTIWRHGHVHQQIYRMGVPEKPLEVIG 158

Query: 135 AMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
             +  GT +         P+   F  +     +++   +R ++     VS      +   
Sbjct: 159 DTDETGTRIRF------WPSDETFSDTT-FHYDILAKRLRELSFLNSGVSIKL-IDEREE 210

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K +     G     +  +       +    + +              +N G     Y F
Sbjct: 211 NKHDHFMYEGGIRAFVEHLNRNKTPIHPTVFHFEHEREDGVSVEVSMQWNDGFQENIYCF 270

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 271 TNNIPQRD 278


>gi|322420041|ref|YP_004199264.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320126428|gb|ADW13988.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 832

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 41  RVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           R+     +   G +   I+D+G G+ +E++P+  +   T K
Sbjct: 750 RINVSTGVRE-GCAVISISDDGPGIAAEDLPLIFEPFFTRK 789


>gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1037

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAV 72
           R +  +  L+ N+  A+ +     +   +         ++ DNG G+  E +P   
Sbjct: 785 RLTQVVSNLLANA--AKFTDEGGCIAIDVEREATTVLIRVRDNGLGIEPERLPQLF 838


>gi|254785019|ref|YP_003072447.1| sensor histidine kinase [Teredinibacter turnerae T7901]
 gi|237684515|gb|ACR11779.1| sensor histidine kinase [Teredinibacter turnerae T7901]
          Length = 499

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           IE+       L+EN+L   +A  S +   +    +    ++ D G G+   ++P     H
Sbjct: 390 IEKLERVFTNLVENALRHTNAGGS-ITVRLKQDTRFVAVEVVDTGVGIPEADVPFVFDPH 448


>gi|220903291|ref|YP_002478603.1| DNA gyrase subunit B [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
 gi|219867590|gb|ACL47925.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 801

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R+  ++     +   + D+G G+  +
Sbjct: 45 VYEVVDNSIDEAMAGFCTRITVILHAD--NSVTVRDDGRGIPVD 86


>gi|212703755|ref|ZP_03311883.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC
          29098]
 gi|212672723|gb|EEB33206.1| hypothetical protein DESPIG_01803 [Desulfovibrio piger ATCC
          29098]
          Length = 799

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R+  ++     +   + D+G G+  +
Sbjct: 43 VYEVVDNSIDEAMAGFCTRITVILHAD--NSVTVRDDGRGIPVD 84


>gi|254413389|ref|ZP_05027160.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180009|gb|EDX75002.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 403

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+LDA    E   +  +      +    + D G G+  E +        T+K
Sbjct: 294 LIGNALDAMWDKEEQTLTIITRQDEDNLYIDVQDTGCGIPPENLSKVFDPFYTTK 348


>gi|118445175|ref|YP_879293.1| DNA gyrase subunit B [Clostridium novyi NT]
 gi|118135631|gb|ABK62675.1| DNA gyrase, B subunit [Clostridium novyi NT]
          Length = 637

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +E +I         + D+G GM 
Sbjct: 41 VYEIVDNSIDEALAGFCQNIEVLIHKDNC--ITVKDDGRGMP 80


>gi|160873496|ref|YP_001552812.1| histidine kinase [Shewanella baltica OS195]
 gi|160859018|gb|ABX47552.1| histidine kinase [Shewanella baltica OS195]
 gi|315265724|gb|ADT92577.1| histidine kinase [Shewanella baltica OS678]
          Length = 989

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E I     AI EL +N+ DA + +V   I  G      + D+G GM+  ++ 
Sbjct: 20 EQIADCPTAISELWKNAYDAYARKVSLNIFDGDLPVSTLVDDGHGMSVADVR 71


>gi|148262307|ref|YP_001229013.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
 gi|146395807|gb|ABQ24440.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
          Length = 379

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 26  AIKELIENSLD-AESS-RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           AIK++I+N+   + S+ RV   I          + DNG G+  E++P   ++  
Sbjct: 271 AIKQVIDNAYKFSRSTGRVAIFIKNQDNICKIIVEDNGVGIAKEDLPKIFEKFY 324


>gi|327404806|ref|YP_004345644.1| histidine kinase [Fluviicola taffensis DSM 16823]
 gi|327320314|gb|AEA44806.1| histidine kinase [Fluviicola taffensis DSM 16823]
          Length = 611

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 17  GEIIERPSIAIKELIENSLD-AESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           G+++ R    ++ELI+N++  A+++ +   +   G    F + DNG G    
Sbjct: 519 GKVVFR---ILQELIQNAVKHAKATEINVTVLQEGNYLLFMVEDNGIGFDKN 567


>gi|319407212|emb|CBI80851.1| topoisomerase protein [Bartonella sp. 1-1C]
          Length = 692

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +   G  +  +TDNG G+  E  P
Sbjct: 89  EIIDNAMDEAVAGYADLIDVSLDKQG--YLTVTDNGRGIPVENHP 131


>gi|163787016|ref|ZP_02181463.1| sensory transduction histidine kinase [Flavobacteriales bacterium
           ALC-1]
 gi|159876904|gb|EDP70961.1| sensory transduction histidine kinase [Flavobacteriales bacterium
           ALC-1]
          Length = 469

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 18  EII-----ERPSIAIKELIENSL-----DAESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           E+I      +    +  L++N +     D+E+ ++E  + +        + DNG G+T E
Sbjct: 356 EVIAKFDRTQLIRVVTNLVKNGIQAIPEDSENPKIEVRVFSENDMVNITVEDNGSGITEE 415

Query: 67  EIPMAVQRHCTSK 79
             P   +   T+K
Sbjct: 416 NKPKVFEPKFTTK 428


>gi|115381178|gb|ABI96238.1| DNA topoisomerase IV subunit B [Spiroplasma insolitum]
          Length = 554

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 14 EIVDNSIDEALAGYCTEINVTIHKN--NAITVQDNGRGVP 51


>gi|149204147|ref|ZP_01881115.1| Hydrogen uptake histidine-kinase [Roseovarius sp. TM1035]
 gi|149142589|gb|EDM30634.1| Hydrogen uptake histidine-kinase [Roseovarius sp. TM1035]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA    E+  +   +   GG++  +I+D G G+ + +         T+K
Sbjct: 337 LVQNAVDAMEGMEAPALRLDLRDEGGRAVLEISDTGPGIAAADAQAIFDPFYTTK 391


>gi|307329402|ref|ZP_07608564.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
 gi|306884936|gb|EFN15960.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
          Length = 483

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 26  AIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            I+ L++N+    S RV   +   GG     ++D+G G+ + +     +R  
Sbjct: 372 VIRNLLDNARRHASQRVRVTLSERGGTVELTVSDDGSGIAAADRLRVFERFT 423


>gi|291518971|emb|CBK74192.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 599

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 14/141 (9%)

Query: 25  IAIKELIENSLDAESSRVETVIAGG----GKSFF-QI--TDNGFGMTSEEIPMAVQRHCT 77
            A+ E+I+NS++A +  +  ++  G    G+    ++   DNG GM S  +   +    +
Sbjct: 25  SAVSEIIDNSVEANAKNIFLILREGIASSGRKVVTEVGFLDNGDGMDSTVLGNCLGIGAS 84

Query: 78  SKISDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
           ++           G  G  L   S+ A   + + S         ++ +  EKI +     
Sbjct: 85  TR-----QARKGMGRFGVGLPQASLYACPLIEVYSWQNGIENAKKVYLDIEKIKNGVQTE 139

Query: 136 MNPGTIVEVRDLFFTIPARLN 156
           +       + + +    +   
Sbjct: 140 IEDPVSAVIPEPYADYISYRT 160


>gi|258620848|ref|ZP_05715882.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573]
 gi|258626885|ref|ZP_05721689.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603]
 gi|258580808|gb|EEW05753.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM603]
 gi|258586236|gb|EEW10951.1| DNA topoisomerase 4 subunit B [Vibrio mimicus VM573]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 88  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 145

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 146 KVTELAVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 198

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 199 EIIFTDKVNNNEHRWLYEDGLKDYLAEGV 227


>gi|257052815|ref|YP_003130648.1| histidine kinase [Halorhabdus utahensis DSM 12940]
 gi|256691578|gb|ACV11915.1| histidine kinase [Halorhabdus utahensis DSM 12940]
          Length = 559

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 13/62 (20%)

Query: 17  GEIIER-----PSIAIKELIENSL---DAESSRVETVI---AGGGKSFFQITDNGFGMTS 65
           G ++ R         + EL++N++   D     V   I   A GG+   ++ D+G G+  
Sbjct: 436 GAVVIRSDPDAIESVLTELLDNAITHTDRTPPSVTVCIHSTADGGR--IEVADDGPGIPP 493

Query: 66  EE 67
           EE
Sbjct: 494 EE 495


>gi|91228486|ref|ZP_01262409.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           alginolyticus 12G01]
 gi|91187973|gb|EAS74282.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           alginolyticus 12G01]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 21  ERPSIAIKELIENSLDA--ESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+LDA   ++  +  +             ++DNG G+++E I    + 
Sbjct: 580 QRLLQVLGNLVSNALDAMNHTTNPQLSLIVNPTDNQVELI-VSDNGCGVSNEMIESMFEP 638

Query: 75  HCTS-KISDDF 84
             TS KI +  
Sbjct: 639 FQTSKKIGEGL 649


>gi|72161344|ref|YP_289001.1| signal transduction histidine kinase [Thermobifida fusca YX]
 gi|71915076|gb|AAZ54978.1| signal transduction histidine kinase [Thermobifida fusca YX]
          Length = 1077

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 17/72 (23%)

Query: 9   KIINQIAAGEIIERPSIAIKELIENS--LDAESSRVETVIA--GGGKSFFQITDNGFGMT 64
            +I+ IA             EL+EN+    A  ++V         G    +ITD+G GM+
Sbjct: 564 DVIHLIA-------------ELVENATVFSAHDTQVSVTAQAVDNGDIIIEITDSGIGMS 610

Query: 65  SEEIPMAVQRHC 76
           +EE+  A Q+  
Sbjct: 611 AEELESANQKLA 622


>gi|56962785|ref|YP_174511.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909023|dbj|BAD63550.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 14/73 (19%)

Query: 31  IENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           I+N+ DA    ++  V+  +   G     +I DNG G+  +      ++  T+K      
Sbjct: 429 IDNAFDAVMETKTPEVDVFLTDIGAELVIEIADNGTGIDPDVAERLFEQGFTTKEG---- 484

Query: 86  NIHTFGFRGEALP 98
                G RG  L 
Sbjct: 485 -----GHRGFGLS 492


>gi|332885345|gb|EGK05596.1| DNA gyrase, B subunit [Dysgonomonas mossii DSM 22836]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I     +   + DNG G+  +
Sbjct: 46 VYEVVDNSIDEALAGYCDDIKVTIHED--NSITVQDNGRGIPVD 87


>gi|311745098|ref|ZP_07718883.1| hypothetical protein ALPR1_01285 [Algoriphagus sp. PR1]
 gi|126577612|gb|EAZ81832.1| hypothetical protein ALPR1_01285 [Algoriphagus sp. PR1]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 26  AIKELIENSLD-AESSRVETVIAGG-GKSFFQITDNGFGMTS 65
            ++E I N+L  +++S +   I+   GK    ++DNG G++ 
Sbjct: 541 VVQEAINNALKHSKASEIAISISQNRGKIKICVSDNGVGISK 582


>gi|186682029|ref|YP_001865225.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464481|gb|ACC80282.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 1042

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 13/62 (20%)

Query: 31  IENSLDA---ESSR----------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           + N++DA    ++           + T +  G      I DNG G+   +     +   T
Sbjct: 933 LNNAIDALENSATSRKKIDNPKIWIRTEVIEGNTILIWIADNGCGIPEIKRSRIFEPFFT 992

Query: 78  SK 79
           +K
Sbjct: 993 TK 994


>gi|330837759|ref|YP_004412400.1| Chaperone protein htpG [Spirochaeta coccoides DSM 17374]
 gi|329749662|gb|AEC03018.1| Chaperone protein htpG [Spirochaeta coccoides DSM 17374]
          Length = 626

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 55/146 (37%)

Query: 19  IIERPSI----AIKELIENSLDAESS------------------RVETVIAGGGKSFFQI 56
           II          ++ELI NS DA                     R++     G K    I
Sbjct: 17  IIHSLYSNKEIFLRELISNSSDALDKLKYQSLVDDKLREISYTPRIDLSFTEGDKRTLTI 76

Query: 57  TDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFR--------------------GEA 96
           +DNG GM+ +++            +D+   I + G R                    G  
Sbjct: 77  SDNGIGMSHDDL------------NDNLGTIASSGTRKFLANLTDDQKKDSNLIGQFGVG 124

Query: 97  LPSIGAVS-HLTLMSRPPQNNTGAQI 121
             S   V+  + ++SR    +   + 
Sbjct: 125 FYSSFMVADKVEVISRKAGEDQAWKW 150


>gi|325924817|ref|ZP_08186252.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544747|gb|EGD16095.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G     ++ DNG G+    + 
Sbjct: 395 LENVVLNLVINARDALKGQGTIRIQSAAYTAHNDPELDDGDYVAVKVIDNGSGIEPAILD 454

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 455 QVFEPFFTTKPIGEGTGLGLSMTYGF 480


>gi|323497739|ref|ZP_08102754.1| sensor kinase CitA [Vibrio sinaloensis DSM 21326]
 gi|323317215|gb|EGA70211.1| sensor kinase CitA [Vibrio sinaloensis DSM 21326]
          Length = 539

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 23/84 (27%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ES-----------SRVETVIAG 48
           +++ L +    +I A +++      +  LI+N+ DA  ++            R+E  I+ 
Sbjct: 410 RLQPLPD----RINAEDVVT----IVGNLIDNAFDATRDAINREPSFTPDRRRIEVSISD 461

Query: 49  GGKSFF-QITDNGFGMTSEEIPMA 71
            G     ++ D G G+  E +  A
Sbjct: 462 YGNELILEVLDQGCGL-PENLSAA 484


>gi|227536305|ref|ZP_03966354.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243912|gb|EEI93927.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 443

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 30  LIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ NS+   +  V        G     + D+G G+   E P   ++    +I  D
Sbjct: 345 LLNNSIKYGAKSVSLSFELNEGLVKIIVKDDGVGIDKVEQPYIFEKFY--RIQKD 397


>gi|269926212|ref|YP_003322835.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789872|gb|ACZ42013.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 477

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 19/86 (22%)

Query: 11  INQIAAGEIIERPSIAIKELI----ENSL------DAESSRVETVIA-GGGKSFFQITDN 59
           I++I+  E++     A+K+L+    +N++      D     ++  +     ++  ++ D 
Sbjct: 357 IDKISDVEVVGD-KDALKQLVLILLDNAIKYTRNQD----SIQVEVEKDDSQAVIRVADT 411

Query: 60  GFGMTSEEIPMAVQRHC---TSKISD 82
           G G++ E +P   +R     TS+ SD
Sbjct: 412 GIGISQEHLPHIFERFYRADTSRSSD 437


>gi|224541292|ref|ZP_03681831.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525796|gb|EEF94901.1| hypothetical protein CATMIT_00452 [Catenibacterium mitsuokai DSM
          15897]
          Length = 641

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   +++  V+  G     ++ DNG GM 
Sbjct: 44 EIVDNSIDEALAGFCNKIRVVLLPG--DVVKVIDNGRGMP 81


>gi|162454634|ref|YP_001617001.1| two-component system histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161165216|emb|CAN96521.1| two-component system histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 503

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 16/76 (21%)

Query: 38  ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEAL 97
            +  +      GG S  +++D G G+  E +P    R  T     D       G  G AL
Sbjct: 405 GAVLIRVSAIEGG-SAIEVSDTGPGIAPENLPRVFDRFFT-----DRPGGKGTGL-GLAL 457

Query: 98  P---------SIGAVS 104
                     SI  VS
Sbjct: 458 AKAIVEAHGGSIAVVS 473


>gi|154497244|ref|ZP_02035940.1| hypothetical protein BACCAP_01537 [Bacteroides capillosus ATCC
           29799]
 gi|150273643|gb|EDN00771.1| hypothetical protein BACCAP_01537 [Bacteroides capillosus ATCC
           29799]
          Length = 474

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 19  IIERPSIAIKELIENSL-------DAESSRVETVIAGGGK-SFFQITDNGFG 62
           +    +I I EL++NSL       D     +   +  G   S  Q++DNG G
Sbjct: 371 VATSVAIIINELLQNSLKYAFTGRDTG--LITITVKKGQLYSSIQVSDNGSG 420


>gi|21242027|ref|NP_641609.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21107427|gb|AAM36145.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G     ++ DNG G+    + 
Sbjct: 395 LENVVLNLVINARDALKGQGTIRIQSAAYTAHNDPELDDGDYVAVKVIDNGSGIEPAILD 454

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 455 QVFEPFFTTKPIGEGTGLGLSMTYGF 480


>gi|78046880|ref|YP_363055.1| putative two-component system sensor histidine kinase-response
           regulator hybridprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035310|emb|CAJ22955.1| putative two-component system sensor histidine kinase-response
           regulator hybridprotein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G     ++ DNG G+    + 
Sbjct: 395 LENVVLNLVINARDALKGQGTIRIQSAAYTARNDPELDDGDYVAVKVIDNGSGIEPAILD 454

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 455 QVFEPFFTTKPIGEGTGLGLSMTYGF 480


>gi|13357637|ref|NP_077911.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC
          700970]
 gi|170762124|ref|YP_001752160.1| DNA gyrase subunit B [Ureaplasma parvum serovar 3 str. ATCC
          27815]
 gi|171920490|ref|ZP_02931785.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC
          27813]
 gi|183508595|ref|ZP_02689822.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC
          33697]
 gi|186701878|ref|ZP_02553290.2| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC
          27818]
 gi|11270885|pir||E82937 DNA topoisomerase, DNA gyrase subunit B UU081 [imported] -
          Ureaplasma urealyticum
 gi|6899032|gb|AAF30486.1|AE002107_10 DNA topoisomerase - DNA gyrase subunit B [Ureaplasma parvum
          serovar 3 str. ATCC 700970]
 gi|168827701|gb|ACA32963.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 3 str. ATCC
          27815]
 gi|171902958|gb|EDT49247.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 1 str. ATCC
          27813]
 gi|182676050|gb|EDT87955.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 14 str. ATCC
          33697]
 gi|186701184|gb|EDU19466.1| DNA gyrase, B subunit [Ureaplasma parvum serovar 6 str. ATCC
          27818]
          Length = 650

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    ++ V  ++   G    ++ D+G G+  E
Sbjct: 46 EIVDNSIDEAMGGFATIVRVILKKDG--SVRVEDDGRGIPIE 85


>gi|261878836|ref|ZP_06005263.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
          bergensis DSM 17361]
 gi|270334578|gb|EFA45364.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
          bergensis DSM 17361]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          E ++NS+D   A     +E  I     +   + DNG G+  ++    
Sbjct: 47 ETVDNSIDEAMAGYCDHIEVTINED--NSCTVEDNGRGIPVDQHEKL 91


>gi|257457903|ref|ZP_05623062.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
 gi|257444616|gb|EEV19700.1| DNA gyrase, B subunit [Treponema vincentii ATCC 35580]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 15/63 (23%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR 74
           + E+++N +D   A     +  V+        ++ DNG G+      EE    + + + R
Sbjct: 40  VYEVVDNCIDEAMAGYCDTILVVLEKN--DTVRVEDNGRGIPVDIHPEEGVSALELVLTR 97

Query: 75  -HC 76
            H 
Sbjct: 98  LHA 100


>gi|296129144|ref|YP_003636394.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
 gi|296020959|gb|ADG74195.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
          Length = 465

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +ER    ++ L+ N++   +S V+       G++   + D+G G+   +      R 
Sbjct: 358 VER---VVRNLVANAVRHAASTVDVCAGTAAGRARVVVDDDGHGIAPGDRERVFARF 411


>gi|218677031|ref|YP_002395850.1| hypothetical protein VS_II1289 [Vibrio splendidus LGP32]
 gi|218325299|emb|CAV27312.1| Hypothetical protein VS_II1289 [Vibrio splendidus LGP32]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 13/67 (19%)

Query: 22  RPSIAIKELIENSLDAESSRVE--------TVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           R    +  LI N+LDA    +E                +    + DNG G+  E+IP   
Sbjct: 549 RLEQVLVNLISNALDA----IEHREQPELSISTQEHSNTIQILVMDNGLGIPEEDIPHLF 604

Query: 73  QRHCTSK 79
               T K
Sbjct: 605 DPFYTRK 611


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254039899|gb|ACT56695.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+N++D   A  ++ +E  + G G  F  + DNG G+  E  P 
Sbjct: 80  EVIDNAMDEVIAGYANLIEVSLDGNG--FLTVVDNGRGIPVENHPK 123


>gi|163758091|ref|ZP_02165179.1| sensor histidine kinase [Hoeflea phototrophica DFL-43]
 gi|162284380|gb|EDQ34663.1| sensor histidine kinase [Hoeflea phototrophica DFL-43]
          Length = 526

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R S  ++ LI N+L      V   +A     G    +++D+G G+  ++      R+
Sbjct: 415 RISQLVRLLIANALQHGHDTVRIHVATYADDGMGVLEVSDDGPGIPDQDQARVFDRY 471


>gi|148264881|ref|YP_001231587.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
 gi|146398381|gb|ABQ27014.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
          Length = 351

 Score = 43.5 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 15/63 (23%)

Query: 30  LIENSLDA---------ESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTS 78
           L++NS++A          + RV+      GK     ++TD+G G++ +++    +   T+
Sbjct: 247 LVKNSIEAMPNGGKFSVAAKRVDLD----GKDAVLVEVTDSGIGISEKDMKTIFKPFHTT 302

Query: 79  KIS 81
           K +
Sbjct: 303 KCN 305


>gi|327400959|ref|YP_004341798.1| Type 2 DNA topoisomerase 6 subunit B [Archaeoglobus veneficus
          SNP6]
 gi|327316467|gb|AEA47083.1| Type 2 DNA topoisomerase 6 subunit B [Archaeoglobus veneficus
          SNP6]
          Length = 606

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 19 IIERPSIAIKELIENSLDA--ESS---RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
          +I      +KE ++NSLDA  E+     +   +    + +   I DNG G+  E+IP   
Sbjct: 35 VIT----CVKEAVDNSLDACEEAGILPDIFVKVDRVDRHYRIVIEDNGPGIIREQIPKVF 90


>gi|313678887|ref|YP_004056627.1| DNA gyrase subunit B [Mycoplasma bovis PG45]
 gi|312950233|gb|ADR24828.1| DNA gyrase, B subunit [Mycoplasma bovis PG45]
          Length = 655

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ ++  I   G  + +I DNG G+ 
Sbjct: 54 EIVDNSVDECMAGYANYIKITICKDG--YIEIEDNGRGIP 91


>gi|311105320|ref|YP_003978173.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8]
 gi|310760009|gb|ADP15458.1| DNA topoisomerase 4 subunit B [Achromobacter xylosoxidans A8]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          E P   ++E+I+N+ D   A    +++  +   G     + D+G G+      EE    +
Sbjct: 31 ENPLHVVQEVIDNAADEALAGYGKQIQVTLHIDG--SVSVEDDGRGIPVGLHPEEHAPVV 88

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 89 ELVFTRLHA 97


>gi|306821823|ref|ZP_07455415.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii
          subsp. margaretiae ATCC 43715]
 gi|304550130|gb|EFM38129.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium yurii
          subsp. margaretiae ATCC 43715]
          Length = 649

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +   I    G     + D+G G+  E
Sbjct: 52 VYEVVDNAIDEALAGFCKNIYVSIDVNNG---ITVIDDGRGIPVE 93


>gi|291300582|ref|YP_003511860.1| GAF sensor signal transduction histidine kinase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569802|gb|ADD42767.1| GAF sensor signal transduction histidine kinase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 578

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTSE 66
             ++E + N++  A +S +      G      +TD+G G+  E
Sbjct: 497 AVVREAVSNAVRHAHASHIVVSAEAGDDLVIDVTDDGKGIPEE 539


>gi|192291144|ref|YP_001991749.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris TIE-1]
 gi|192284893|gb|ACF01274.1| DNA topoisomerase IV, B subunit [Rhodopseudomonas palustris TIE-1]
          Length = 683

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +
Sbjct: 76  EVIDNSMDEALAGHATFIEVELTADG--FLTVSDNGRGIPVD 115


>gi|120609256|ref|YP_968934.1| hypothetical protein Aave_0555 [Acidovorax citrulli AAC00-1]
 gi|120587720|gb|ABM31160.1| hypothetical protein Aave_0555 [Acidovorax citrulli AAC00-1]
          Length = 523

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 25 IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
            + EL++N+  A++S +   +         + DNG G+  E++ 
Sbjct: 25 SMLGELLQNARRAQASDIRIYVTD---DCIAVHDNGSGI--EDLQ 64


>gi|86159950|ref|YP_466735.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776461|gb|ABC83298.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 401

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 6   LSEKIINQIAA--GEIIE----RPSIAIKELIENSL---DAESSRVETVIAG-GGKSFFQ 55
           L      +IAA  G + E    R    +  L+ N+L   D     V+  ++  GG +   
Sbjct: 274 LPSADRARIAAEPGVVGEWDRARLEQIVANLVGNALKFGD--GKPVDVSVSSHGGLARLV 331

Query: 56  ITDNGFGMTSEEIPMAVQRH 75
           + D G G+  EE P   +R 
Sbjct: 332 VADQGAGIAEEERPRLFRRF 351


>gi|39935552|ref|NP_947828.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris CGA009]
 gi|39649405|emb|CAE27927.1| DNA topoisomerase [Rhodopseudomonas palustris CGA009]
          Length = 683

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +
Sbjct: 76  EVIDNSMDEALAGHATFIEVELTADG--FLTVSDNGRGIPVD 115


>gi|310657321|ref|YP_003935042.1| DNA gyrase subunit b [Clostridium sticklandii DSM 519]
 gi|308824099|emb|CBH20137.1| DNA gyrase (subunit B) [Clostridium sticklandii]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A    ++   I    G     + DNG G+  E
Sbjct: 46 VYEVVDNAIDEALAGHCDKIYVSIDPDNG---ITVKDNGRGIPVE 87


>gi|284051687|ref|ZP_06381897.1| DNA gyrase subunit B [Arthrospira platensis str. Paraca]
 gi|291569892|dbj|BAI92164.1| DNA gyrase B subunit [Arthrospira platensis NIES-39]
          Length = 645

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +E  I     +  ++TD+G G+  +
Sbjct: 39 VYEVVDNSVDEALAGYCTHIEVDINPD--NSVRVTDDGRGIPID 80


>gi|229523391|ref|ZP_04412798.1| sensor kinase CitA [Vibrio cholerae TM 11079-80]
 gi|229339754|gb|EEO04769.1| sensor kinase CitA [Vibrio cholerae TM 11079-80]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGTELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|258405093|ref|YP_003197835.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257797320|gb|ACV68257.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 801

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA        R+            ++   DNG G++ +++        T+K
Sbjct: 703 LLMNAMDAVDPAEG--RIVIQTRQEAPDTVRVRITDNGPGISKDDMEKIFDPFYTTK 757


>gi|262197820|ref|YP_003269029.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081167|gb|ACY17136.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 37  AESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           AE +RV    A  G+    +++D G G+  E++    +   T+K
Sbjct: 407 AEQNRVSISTAEDGEQIIVRVSDTGCGIPPEQLQRIFEPFYTTK 450


>gi|167627017|ref|YP_001677517.1| signal transduction histidine kinase-like protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597018|gb|ABZ87016.1| Signal transduction histidine kinase-like protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 411

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 30  LIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI NS++A  ++++  I        G  +  I DNG G+  E I    ++  
Sbjct: 89  LINNSIEANKNKIDFRIKIITKVSFGNVYVLIKDNGVGIPRENIEKIFEKGY 140


>gi|163838775|ref|YP_001623180.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
 gi|162952251|gb|ABY21766.1| DNA gyrase subunit B [Renibacterium salmoninarum ATCC 33209]
          Length = 702

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 29  ELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A   + +E  +   GG    ++ D+G G+  +
Sbjct: 77  EVVDNSVDEALAGYCTHIEITLQADGG---VRVDDDGRGIPVD 116


>gi|153824551|ref|ZP_01977218.1| sensor kinase citA [Vibrio cholerae MZO-2]
 gi|149741769|gb|EDM55798.1| sensor kinase citA [Vibrio cholerae MZO-2]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGTELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|139439273|ref|ZP_01772715.1| Hypothetical protein COLAER_01731 [Collinsella aerofaciens ATCC
           25986]
 gi|133775297|gb|EBA39117.1| Hypothetical protein COLAER_01731 [Collinsella aerofaciens ATCC
           25986]
          Length = 541

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 30  LIENSLD---AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           L+ N++    A S  +   I   GG     + D+G G+  E+     +   T
Sbjct: 435 LVNNAVTYTPAGS-HIVISIGVDGGHVTCSVADDGPGIAPEDRERIFESFYT 485


>gi|83648377|ref|YP_436812.1| DNA topoisomerase IV subunit B [Hahella chejuensis KCTC 2396]
 gi|83636420|gb|ABC32387.1| DNA topoisomerase IV, B subunit [Hahella chejuensis KCTC 2396]
          Length = 687

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + +V+ V+   G     +TD+G GM  +
Sbjct: 88  RPNHLAQEVIDNSVDEALAGHARQVDVVLYKDG--SLSVTDDGRGMPVD 134


>gi|103486580|ref|YP_616141.1| DNA topoisomerase IV subunit B [Sphingopyxis alaskensis RB2256]
 gi|98976657|gb|ABF52808.1| DNA topoisomerase IV, B subunit [Sphingopyxis alaskensis RB2256]
          Length = 659

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++R+E  +  G  +   I DNG GM  +
Sbjct: 52 EVIDNSMDEAVAGHATRIEVTLDVG--NRLTIVDNGRGMPVD 91


>gi|312134120|ref|YP_004001458.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311774171|gb|ADQ03658.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 566

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 23/73 (31%)

Query: 19  IIE----RPSIAIKELIENSLDAESSRVETVIAGGGKS-----------FFQITDNGFGM 63
           +IE    R    +  LI N++          +  GG+               + DNG G+
Sbjct: 449 VIEADRDRLEQVLINLINNAV--------VYVQEGGQIEVGLEKDEEHVKITVKDNGPGI 500

Query: 64  TSEEIPMAVQRHC 76
             +++P   +R  
Sbjct: 501 PEDDLPRIFERFY 513


>gi|308271010|emb|CBX27620.1| hypothetical protein N47_H24420 [uncultured Desulfobacterium sp.]
          Length = 584

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 41  RVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSK 79
           +++      G     +T  DNG+G+   ++    +   ++K
Sbjct: 486 KIDITAKREGTGLISVTFTDNGYGIPKADLERVFEPFFSTK 526


>gi|212217692|ref|YP_002304479.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154]
 gi|212011954|gb|ACJ19334.1| DNA gyrase subunit B [Coxiella burnetii CbuK_Q154]
          Length = 810

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+ ++
Sbjct: 48 EVVDNSIDEALAGFCSHIWVTIHADG--SVSVRDNGRGIPTD 87


>gi|212211673|ref|YP_002302609.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212]
 gi|212010083|gb|ACJ17464.1| DNA gyrase subunit B [Coxiella burnetii CbuG_Q212]
          Length = 810

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+ ++
Sbjct: 48 EVVDNSIDEALAGFCSHIWVTIHADG--SVSVRDNGRGIPTD 87


>gi|215918859|ref|NP_819060.2| DNA gyrase subunit B [Coxiella burnetii RSA 493]
 gi|206583743|gb|AAO89574.2| DNA gyrase subunit B [Coxiella burnetii RSA 493]
          Length = 810

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+ ++
Sbjct: 48 EVVDNSIDEALAGFCSHIWVTIHADG--SVSVRDNGRGIPTD 87


>gi|165922503|ref|ZP_02219674.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334]
 gi|165916708|gb|EDR35312.1| DNA gyrase, B subunit [Coxiella burnetii RSA 334]
          Length = 779

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+ ++
Sbjct: 17 EVVDNSIDEALAGFCSHIWVTIHADG--SVSVRDNGRGIPTD 56


>gi|187250428|ref|YP_001874910.1| DNA gyrase subunit B [Elusimicrobium minutum Pei191]
 gi|186970588|gb|ACC97573.1| DNA gyrase, B subunit [Elusimicrobium minutum Pei191]
          Length = 825

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++++   I         + D+G G+  +
Sbjct: 47 VYEVVDNSVDEILAGGATKISVTIKDD--MTCSVADDGRGIPVD 88


>gi|153209811|ref|ZP_01947513.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|120575235|gb|EAX31859.1| DNA gyrase, B subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 808

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+ ++
Sbjct: 46 EVVDNSIDEALAGFCSHIWVTIHADG--SVSVRDNGRGIPTD 85


>gi|119503576|ref|ZP_01625659.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080]
 gi|119460638|gb|EAW41730.1| DNA gyrase subunit B [marine gamma proteobacterium HTCC2080]
          Length = 809

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 83/247 (33%), Gaps = 27/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQRH 75
           EL++NS+D   A   S++  VI         + D+G G+ +E         E+ M V  H
Sbjct: 49  ELVDNSIDEALAGHCSKISVVIHPD--ESVSVGDDGRGIPTEMHEEGVSAAEVIMTVL-H 105

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S HL L  R        Q+   G  ++ +  V
Sbjct: 106 AGGKFDDNTYKV-SGGLHGVGVSVVNALSEHLQLTIRRQGELH-EQVYKHGVPVAPLAVV 163

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T   VR              + +   +++   +R +A     V    +  +S R 
Sbjct: 164 GETESTGTSVR-----FKPSAETFTNIEFHFDILGKRLRELAFLNSGVCIELTDERSART 218

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +      +G     +  +       N V   E   +  +     +   N         + 
Sbjct: 219 ETYAY--DGGLNAFVEFLNKGKNTINKVFHCETIADGDVGVEVALQW-NDSFQENILCYT 275

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 276 NNIPQRD 282


>gi|161830408|ref|YP_001595905.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331]
 gi|161762275|gb|ABX77917.1| DNA gyrase, B subunit [Coxiella burnetii RSA 331]
          Length = 808

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+ ++
Sbjct: 46 EVVDNSIDEALAGFCSHIWVTIHADG--SVSVRDNGRGIPTD 85


>gi|226362903|ref|YP_002780683.1| DNA gyrase subunit B [Rhodococcus opacus B4]
 gi|226241390|dbj|BAH51738.1| DNA gyrase subunit B [Rhodococcus opacus B4]
          Length = 680

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +S+VE  +   GG    Q+ D+G G+ 
Sbjct: 51 EVVDNSVDEAMAGYASKVEITLLEDGG---VQVVDDGRGIP 88


>gi|222082592|ref|YP_002541957.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221727271|gb|ACM30360.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 22  RPSI---AIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQ 73
           RP     A++ L+EN++    +     +    G+    + D+G G+  EEI  A +
Sbjct: 360 RPVALKRALRNLVENAIRYGGTA-SVTLNDADGEVIISVEDDGPGIPDEEIEDAFE 414


>gi|220920179|ref|YP_002495480.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219944785|gb|ACL55177.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 630

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+LDA +     RV    A  G ++  ++ DNG G+             
Sbjct: 520 RLEQVVVNLLQNALDAVAGRPDPRVTVRAAALGDRALLEVGDNGPGIPDSVRAQVFDPFF 579

Query: 77  TSK 79
           T+K
Sbjct: 580 TTK 582


>gi|154686245|ref|YP_001421406.1| YvrG [Bacillus amyloliquefaciens FZB42]
 gi|154352096|gb|ABS74175.1| YvrG [Bacillus amyloliquefaciens FZB42]
          Length = 465

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++   +    ++   I DNG G+  EE+     R+ 
Sbjct: 384 KIVVQLEQKERTHVTIKDNGKGIEEEELEKVFDRYY 419


>gi|42491107|emb|CAE11244.1| YvrG protein [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++   +    ++   I DNG G+  EE+     R+ 
Sbjct: 375 KIVVQLEQKERTHVTIKDNGKGIEEEELEKVFDRYY 410


>gi|19909651|dbj|BAB87021.1| DNA gyrase subunit B [Vibrio campbellii]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   +TD+G G+      EE   A +      H
Sbjct: 13  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHPEENVSAAEVIMTVLH 70

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  + 
Sbjct: 71  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIG 129

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R  +           + +   +++   +R ++     VS      +    K
Sbjct: 130 DTEKTGTQIR-FW----PSAETFSNTEFHYDILAKRLRELSFLNSGVSIKL-VDEREADK 183

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 184 SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGISVEVAMQWNDGFQENIYCFTN 243

Query: 256 GRTVQD 261
               +D
Sbjct: 244 NIPQRD 249


>gi|332290826|ref|YP_004429435.1| Heat shock protein Hsp90-like protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168912|gb|AEE18167.1| Heat shock protein Hsp90-like protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 629

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 26/123 (21%)

Query: 27  IKELIENSLDA-----------ESS------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N+ DA           E+S      ++E  I   GK    I D G GMT +E+ 
Sbjct: 29  LRELVSNATDATLKLKHLTSIGEASVDYGNPKIEIKIDKEGKKL-HIIDQGLGMTQDEVE 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQI 121
             + +   S       K  +   +    G  G    S   V S + ++++  ++   A  
Sbjct: 88  KYINQLAFSGAEEFLNKYEEGAKDTGIIGHFGLGFYSAFMVASTVEIITKSYKDEPAAHW 147

Query: 122 AIS 124
              
Sbjct: 148 TCD 150


>gi|284041265|ref|YP_003391195.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283820558|gb|ADB42396.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 24  SIAIKELIENSL-DAESSRVETVI--AGGGKSFFQITDNGFGM 63
              + ELI N++  A +++V   +     G     + D+G GM
Sbjct: 561 YSIVFELINNAIRHANATQVIISLVRTDQGID-ISVADDGIGM 602


>gi|229002578|ref|ZP_04160625.1| hypothetical protein bmyco0003_56660 [Bacillus mycoides Rock3-17]
 gi|228758505|gb|EEM07645.1| hypothetical protein bmyco0003_56660 [Bacillus mycoides Rock3-17]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 17/74 (22%)

Query: 7   SEKIINQIAAGEII-------ERPSIAIKELIENSLDAESSRVET--VIAGGGKSFFQIT 57
            +  I  I +   +       E  +  +K  +       ++ +     I         I 
Sbjct: 362 PDDDIATIDSHTAVALYRIVQESLTNVVKHTV-------ATEIVINMEIKDCSIEL-SIH 413

Query: 58  DNGFGMTSEEIPMA 71
           DNG G+   +   A
Sbjct: 414 DNGHGIRETDFEKA 427


>gi|226228862|ref|YP_002762968.1| hypothetical protein GAU_3456 [Gemmatimonas aurantiaca T-27]
 gi|226092053|dbj|BAH40498.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 1023

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 37  AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           A ++R+   ++ G     +ITDNG G+  +
Sbjct: 919 ASATRIAIDVSHGTNFSLRITDNGVGIDPD 948


>gi|196249174|ref|ZP_03147873.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|196211403|gb|EDY06163.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 31  IENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++N+++A     + +V   I   G+   +I D G GMT E++    + + T+K
Sbjct: 322 MKNAIEAMPNGGTLQVYVSIDD-GRVLIRIADTGVGMTKEQLERLGEPYFTTK 373


>gi|194339089|gb|ACF49460.1| GyrB [Amycolatopsis minnesotensis]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +++VE  + A GG    ++ D+G G+  +
Sbjct: 18 EVVDNAVDEAMAGYATKVEVTLLADGG---VRVVDDGRGIPVD 57


>gi|170754704|ref|YP_001780677.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169119916|gb|ACA43752.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 473

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G+  E++P   +R   S
Sbjct: 387 VKVSLSKGEDKIFIKVEDNGEGIPKEDLPHIFERFYRS 424


>gi|158520905|ref|YP_001528775.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509731|gb|ABW66698.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 19  IIER--PSIAIKELIENSLDAE--SSRVETVIA---------GGGKSFFQITDNGFGMTS 65
           +I+R      +  +I N+LDA   S  +E   A           G     + D G G+  
Sbjct: 526 VIDRSQMQSVLLNMIINALDASEPSDTIEIATAMARSAGAPGRNGVE-ITVADTGCGIPP 584

Query: 66  EEIPMAVQRHCTSK 79
           E +        ++K
Sbjct: 585 ENLDKLFDPFFSTK 598


>gi|153002883|ref|YP_001377208.1| DNA gyrase subunit B [Anaeromyxobacter sp. Fw109-5]
 gi|152026456|gb|ABS24224.1| DNA gyrase, B subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 795

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 17 GEIIER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          G++ ER     + E+++NS+D   A  ++ +   I     S   I DNG G+ 
Sbjct: 17 GDVGERGLHHLVYEVVDNSVDEAMAGRANEITVTIHAD--SSITIVDNGSGIP 67


>gi|39936082|ref|NP_948358.1| response regulator receiver sensor signal transduction histidine
           kinase [Rhodopseudomonas palustris CGA009]
 gi|192291799|ref|YP_001992404.1| response regulator receiver sensor signal transduction histidine
           kinase [Rhodopseudomonas palustris TIE-1]
 gi|39649936|emb|CAE28459.1| response regulator receiver:histidine kinase [Rhodopseudomonas
           palustris CGA009]
 gi|192285548|gb|ACF01929.1| response regulator receiver sensor signal transduction histidine
           kinase [Rhodopseudomonas palustris TIE-1]
          Length = 378

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 15/70 (21%)

Query: 4   RKLSEKIIN---QIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDN 59
           R+L   I +   +I    + E  +  ++        A ++RV  ++   G      I DN
Sbjct: 275 RRLPPDIESALYRI----VQEGITNVVRH-------AHATRVGVILEFRGSDVICIIEDN 323

Query: 60  GFGMTSEEIP 69
           G G+  E+  
Sbjct: 324 GCGIPPEQAD 333


>gi|328472404|gb|EGF43271.1| DNA gyrase subunit B [Lactobacillus rhamnosus MTCC 5462]
          Length = 162

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++R+E  +     +   +TD+G G+  +
Sbjct: 7  EIIDNGIDEALAGFATRIEVEVNPD--NSVTVTDDGRGIPVD 46


>gi|326335168|ref|ZP_08201365.1| chaperone HtpG [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692698|gb|EGD34640.1| chaperone HtpG [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 88/274 (32%), Gaps = 41/274 (14%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA           E+        +E  I   GK    I D G GMT EE+ 
Sbjct: 28  LRELISNATDATLKFKHLCQIGEAKIPYGDPIIEVKIDKEGKKL-HIIDQGIGMTEEEVE 86

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRP-PQNNTGAQ 120
             + +   S       K  D   +    G  G    S   V+  + +++R   ++    +
Sbjct: 87  KYINQIAFSGAEEFLNKYKDSAKDTGIIGHFGLGFYSAFMVADKVEILTRSYQEDAQAIR 146

Query: 121 IAISGEKISSVRPV-AMNPGTIVEVRDLFFTIP------ARLNFLKSEQVETNLITDVIR 173
               G    S+ P+   + GT + +     ++        R   +K  +     I   +R
Sbjct: 147 WECDGSPAYSIEPIEKKDHGTEIILHIAEDSVEFLEESKIRQLLIKYNKFMPIPIKLGMR 206

Query: 174 RMAIAYP-----KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
           + A+  P          +  +       N        P  +++   + F +       + 
Sbjct: 207 KEALPRPENAPEDYKTEYKEVDDIIN--NPTPAWTKQPSELTEEDYKAFYHELYPSQYED 264

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDK 262
              ++      P    G      +  + +  +D+
Sbjct: 265 PMFSIHLNVDYPFHLTGILYFPKLSNDLQFQKDR 298


>gi|302133086|ref|ZP_07259076.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 998

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A G    F+++D+G G+ +
Sbjct: 645 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 702

Query: 66  EEIPMAVQRHCTSK 79
           + +P   QR+ + K
Sbjct: 703 QHLPYIFQRYWSVK 716


>gi|302060794|ref|ZP_07252335.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato K40]
          Length = 1003

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A G    F+++D+G G+ +
Sbjct: 650 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 707

Query: 66  EEIPMAVQRHCTSK 79
           + +P   QR+ + K
Sbjct: 708 QHLPYIFQRYWSVK 721


>gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon]
          Length = 476

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 21  ERPSIAIKELIENSL--DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  +  L+ N++     S  +    I   G+   +++D G G+  E++     +  
Sbjct: 366 EKLTQVVINLLNNAIKFTPRSGEISIKAIELNGQVEVKVSDTGIGIPPEDLEKVFDKFY 424


>gi|229551099|ref|ZP_04439824.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
          LMS2-1]
 gi|258507000|ref|YP_003169751.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
 gi|258538197|ref|YP_003172696.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
 gi|229315560|gb|EEN81533.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
          LMS2-1]
 gi|257146927|emb|CAR85900.1| DNA gyrase subunit B [Lactobacillus rhamnosus GG]
 gi|257149873|emb|CAR88845.1| DNA gyrase subunit B [Lactobacillus rhamnosus Lc 705]
 gi|259648370|dbj|BAI40532.1| DNA gyrase B subunit [Lactobacillus rhamnosus GG]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++R+E  +     +   +TD+G G+  +
Sbjct: 55 EIIDNGIDEALAGFATRIEVEVNPD--NSVTVTDDGRGIPVD 94


>gi|227533501|ref|ZP_03963550.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
          ATCC 25302]
 gi|227188830|gb|EEI68897.1| DNA gyrase, B subunit [Lactobacillus paracasei subsp. paracasei
          ATCC 25302]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++R+E  +     +   +TD+G G+  +
Sbjct: 55 EIIDNGIDEALAGFATRIEVEVNPD--NSVTVTDDGRGIPVD 94


>gi|254507351|ref|ZP_05119487.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16]
 gi|219549811|gb|EED26800.1| DNA gyrase, B subunit [Vibrio parahaemolyticus 16]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCQDIVVTIHED--NSVSVRDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+      + +   +++   +R ++     VS      +    +
Sbjct: 159 ETDKTGTEIRF----WPSE-ETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDEREEDKQ 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     +  +            +  +             +N G     + F N
Sbjct: 214 DHFMYEGG-IQAFVDHLNTNKTPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIFCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|213969967|ref|ZP_03398100.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1]
 gi|301382239|ref|ZP_07230657.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|213925292|gb|EEB58854.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1]
          Length = 998

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A G    F+++D+G G+ +
Sbjct: 645 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 702

Query: 66  EEIPMAVQRHCTSK 79
           + +P   QR+ + K
Sbjct: 703 QHLPYIFQRYWSVK 716


>gi|199598229|ref|ZP_03211650.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
 gi|199590832|gb|EDY98917.1| DNA gyrase, B subunit [Lactobacillus rhamnosus HN001]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++R+E  +     +   +TD+G G+  +
Sbjct: 55 EIIDNGIDEALAGFATRIEVEVNPD--NSVTVTDDGRGIPVD 94


>gi|191636829|ref|YP_001985995.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
 gi|239630809|ref|ZP_04673840.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301065132|ref|YP_003787155.1| DNA gyrase subunit B [Lactobacillus casei str. Zhang]
 gi|190711131|emb|CAQ65137.1| DNA gyrase, B subunit [Lactobacillus casei BL23]
 gi|239527092|gb|EEQ66093.1| DNA gyrase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300437539|gb|ADK17305.1| DNA gyrase, B subunit [Lactobacillus casei str. Zhang]
 gi|327380868|gb|AEA52344.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          casei LC2W]
 gi|327384032|gb|AEA55506.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          casei BD-II]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++R+E  +     +   +TD+G G+  +
Sbjct: 55 EIIDNGIDEALAGFATRIEVEVNPD--NSVTVTDDGRGIPVD 94


>gi|28869841|ref|NP_792460.1| bacteriophytochrome [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853086|gb|AAO56155.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 993

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A G    F+++D+G G+ +
Sbjct: 645 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 702

Query: 66  EEIPMAVQRHCTSK 79
           + +P   QR+ + K
Sbjct: 703 QHLPYIFQRYWSVK 716


>gi|116493579|ref|YP_805313.1| DNA gyrase, B subunit [Lactobacillus casei ATCC 334]
 gi|116103729|gb|ABJ68871.1| DNA gyrase subunit B [Lactobacillus casei ATCC 334]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++R+E  +     +   +TD+G G+  +
Sbjct: 55 EIIDNGIDEALAGFATRIEVEVNPD--NSVTVTDDGRGIPVD 94


>gi|302037396|ref|YP_003797718.1| DNA topoisomerase VI subunit B [Candidatus Nitrospira defluvii]
 gi|300605460|emb|CBK41793.1| DNA topoisomerase VI, subunit B [Candidatus Nitrospira defluvii]
          Length = 662

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 17/67 (25%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIA------------GGGKSFFQITDNGFGMTSEE 67
             +KE ++NSLDA  E+     V   +                +    +TDNG G+  ++
Sbjct: 37  TCVKEAVDNSLDACEEAGILPEVTVRLETVANGQAPVAPSQATRFRITVTDNGPGIVRQQ 96

Query: 68  IPMAVQR 74
           IP    +
Sbjct: 97  IPRVFAK 103


>gi|228967769|ref|ZP_04128785.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791923|gb|EEM39509.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   I+    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTISSDNNKVIVKVIDNGSGIESDTLPYIFERFY 429


>gi|288574018|ref|ZP_06392375.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569759|gb|EFC91316.1| DNA gyrase, B subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 22/96 (22%)

Query: 23  PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ- 73
               + E+++N++D   A   S ++  I   G     ++DNG G+           A + 
Sbjct: 40  LHHCVYEVVDNAVDEALAGYCSEIKVTIHTDG--SVSVSDNGRGIPVDPHPSNGRPACEV 97

Query: 74  ----RHCTSKISDDFSNIHTFGFRG------EALPS 99
                H   K ++D   + + G  G       AL S
Sbjct: 98  VLTVLHAGGKFNNDTYKV-SGGLHGVGVSVVNALSS 132


>gi|170739551|ref|YP_001768206.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168193825|gb|ACA15772.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 12/89 (13%)

Query: 1   MKIRKLSEKIINQIAAGEIIE-----RPSIAIKELIENSLDAESS----RVETVIAGGG- 50
           MK+++++  I+ +I + ++I      R    I  L  N++DA ++     +   ++    
Sbjct: 492 MKLKEIN--IVTKIPSEDVILKCDPNRLEQVIINLFSNAVDAVANVHHPEIVVSVSRHQD 549

Query: 51  KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +    + DNG G++   +P   +   T+K
Sbjct: 550 RGAICVHDNGPGISDSVMPHLFEPFFTTK 578


>gi|148980121|ref|ZP_01815901.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3]
 gi|145961422|gb|EDK26728.1| DNA gyrase subunit B [Vibrionales bacterium SWAT-3]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCNDIIVTIHED--NSVSVRDDGRGIPTEIHPEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGKIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+      +     +++   +R ++     VS      +    K
Sbjct: 159 DTDQTGTEIRF----WPSE-ETFSNVLFHYDILAKRLRELSFLNSGVSIKL-IDEREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 213 SDHFMFEGGIQAFVDHLNTNKTPIIQKIFHFDHEREDGITVEVAMQWNDGYQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|28896788|ref|NP_796393.1| DNA gyrase subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839074|ref|ZP_01991741.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363487|ref|ZP_05776320.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030]
 gi|260876546|ref|ZP_05888901.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260897307|ref|ZP_05905803.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901413|ref|ZP_05909808.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|29611941|sp|O51859|GYRB_VIBPA RecName: Full=DNA gyrase subunit B
 gi|28804996|dbj|BAC58277.1| DNA gyrase, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747457|gb|EDM58411.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|308087831|gb|EFO37526.1| DNA gyrase, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308090372|gb|EFO40067.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308107191|gb|EFO44731.1| DNA gyrase, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113561|gb|EFO51101.1| DNA gyrase, B subunit [Vibrio parahaemolyticus K5030]
 gi|328471241|gb|EGF42143.1| DNA gyrase subunit B [Vibrio parahaemolyticus 10329]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 78/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R  +           + +   +++   +R ++     VS      +    +
Sbjct: 159 DTDKTGTQIR-FW----PSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQ 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     +  +            +                +N G     + F N
Sbjct: 214 DHFMYEGG-IQAFVQHLNTNKTPIIEKIFHFDLEREDGISVEVAMQWNDGFQENIFCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|325106678|ref|YP_004267746.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM
          5305]
 gi|324966946|gb|ADY57724.1| DNA topoisomerase IV subunit B [Planctomyces brasiliensis DSM
          5305]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  +   G S   + DNG G+  +
Sbjct: 45 EVVDNSVDEFLAGHADTIKITLHKDGSSL-TVADNGRGIPVD 85


>gi|296268954|ref|YP_003651586.1| ATP-binding region ATPase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296091741|gb|ADG87693.1| ATP-binding region ATPase domain protein [Thermobispora bispora DSM
           43833]
          Length = 1051

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 9   KIINQIA-AGEIIERPSIAIKELIENSL-----DAESSRVETV--IAGGGKSFFQITDNG 60
           K+   IA +G  +      + ELIEN+L     D   ++V        GG     ++D+G
Sbjct: 523 KVHRSIAISGHAVNDVIHLVAELIENALSFSPRD---TKVIVSSVFVDGGAVMLGVSDSG 579

Query: 61  FGMTSEEIP 69
            GM+ EE+ 
Sbjct: 580 IGMSHEELA 588


>gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 598

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 30  LIENSL---DAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++   DA   ++   +   G       ITD G G+  E+IP   +R  
Sbjct: 496 LLDNAVRYTDAG-GKIFVSVGDVGLKGVEIAITDTGKGIPKEDIPFIWERFY 546


>gi|294508443|ref|YP_003572501.1| DNA gyrase subunit B [Salinibacter ruber M8]
 gi|294344771|emb|CBH25549.1| DNA gyrase subunit B [Salinibacter ruber M8]
          Length = 698

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 50/145 (34%)

Query: 6   LSEKIINQIAAG--EIIERPSIAIK-------------------ELIENSLD---AE-SS 40
           L ++ I+  AA   +++E      K                   E+++NS+D   A    
Sbjct: 53  LPDRAISDYAASNIQVLEGLEAVRKRPSMYIGDVGLRGLHHLVYEVLDNSIDEAMAGHCD 112

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR----------HCTSKISDDFSNIHTF 90
            +   I   G     I DNG G+  ++ P A  R          H   K   D   + + 
Sbjct: 113 EIGVEIYEDG--SVSIEDNGRGIPVDQHP-AEDRSALEVVMTVLHAGGKFDKDSYQV-SG 168

Query: 91  GFRG------EALPSIGAVSHLTLM 109
           G  G       AL S        + 
Sbjct: 169 GLHGVGVSVVNALAS-----RFEVT 188


>gi|260426244|ref|ZP_05780223.1| periplasmic sensor signal transduction histidine kinase
           [Citreicella sp. SE45]
 gi|260420736|gb|EEX13987.1| periplasmic sensor signal transduction histidine kinase
           [Citreicella sp. SE45]
          Length = 592

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 16  AGEIIERPSIAIKELIENSLDAES----SRVETVI---AGGGKSFFQITDNGFGMT 64
           AG++  R    +  L+ N++DA +     R+E  +      G     + D G G+ 
Sbjct: 478 AGDV--RLGQVVVNLLSNAMDAMADSASRRIEIRVAPDDEAGLVRLTVRDTGPGIA 531


>gi|222147067|ref|YP_002548024.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734057|gb|ACM35020.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LIEN+LD    +V   +    +     I D+G G   + +    + + TS+ SD
Sbjct: 329 LIENALDYARDQVTITVEHDNRHVTIIIEDDGEGFAPDILLRIGEPYVTSRKSD 382


>gi|126662002|ref|ZP_01733001.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38]
 gi|126625381|gb|EAZ96070.1| DNA gyrase, B subunit [Flavobacteria bacterium BAL38]
          Length = 646

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 44 VYEVVDNSIDEALAGHCDTIYVAINED--NSITVEDNGRGIPVD 85


>gi|52079654|ref|YP_078445.1| two-component sensor kinase [Bacillus licheniformis ATCC 14580]
 gi|52785016|ref|YP_090845.1| hypothetical protein BLi01245 [Bacillus licheniformis ATCC 14580]
 gi|52002865|gb|AAU22807.1| two-component sensor kinase [Bacillus licheniformis ATCC 14580]
 gi|52347518|gb|AAU40152.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 531

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+ DA S +    +   ++ G      ++ D+G G+   E     Q+  ++K
Sbjct: 436 LIENAFDAVSHKKDRSILVFLSDGADHILIEVEDSGDGIPKGEQERIFQKFYSTK 490


>gi|328905793|gb|EGG25569.1| DNA gyrase, B subunit [Propionibacterium sp. P08]
          Length = 681

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 61  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 112


>gi|327456322|gb|EGF02977.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA2]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|327334567|gb|EGE76278.1| DNA gyrase, B subunit [Propionibacterium acnes HL097PA1]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|315107489|gb|EFT79465.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA1]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|314982912|gb|EFT27004.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA3]
 gi|315091218|gb|EFT63194.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA4]
 gi|315105172|gb|EFT77148.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA2]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|314965771|gb|EFT09870.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA2]
 gi|315094452|gb|EFT66428.1| DNA gyrase, B subunit [Propionibacterium acnes HL060PA1]
 gi|327328947|gb|EGE70707.1| DNA gyrase, B subunit [Propionibacterium acnes HL103PA1]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|314922686|gb|EFS86517.1| DNA gyrase, B subunit [Propionibacterium acnes HL001PA1]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|313835161|gb|EFS72875.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA2]
 gi|314929137|gb|EFS92968.1| DNA gyrase, B subunit [Propionibacterium acnes HL044PA1]
 gi|314970916|gb|EFT15014.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA3]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 70  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 121


>gi|313806865|gb|EFS45363.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA2]
 gi|313817652|gb|EFS55366.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA2]
 gi|313821523|gb|EFS59237.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA1]
 gi|313824533|gb|EFS62247.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA2]
 gi|313826201|gb|EFS63915.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA1]
 gi|314926324|gb|EFS90155.1| DNA gyrase, B subunit [Propionibacterium acnes HL036PA3]
 gi|314961671|gb|EFT05772.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA2]
 gi|314980248|gb|EFT24342.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA2]
 gi|314987104|gb|EFT31196.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA2]
 gi|314990695|gb|EFT34786.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA3]
 gi|315083089|gb|EFT55065.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA2]
 gi|315086622|gb|EFT58598.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA3]
 gi|315088023|gb|EFT59999.1| DNA gyrase, B subunit [Propionibacterium acnes HL072PA1]
 gi|327333681|gb|EGE75398.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA3]
 gi|327444460|gb|EGE91114.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA2]
 gi|328757967|gb|EGF71583.1| DNA gyrase, B subunit [Propionibacterium acnes HL020PA1]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|313771057|gb|EFS37023.1| DNA gyrase, B subunit [Propionibacterium acnes HL074PA1]
 gi|313792559|gb|EFS40645.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA1]
 gi|313803561|gb|EFS44743.1| DNA gyrase, B subunit [Propionibacterium acnes HL110PA2]
 gi|313811778|gb|EFS49492.1| DNA gyrase, B subunit [Propionibacterium acnes HL083PA1]
 gi|313814213|gb|EFS51927.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA1]
 gi|313832312|gb|EFS70026.1| DNA gyrase, B subunit [Propionibacterium acnes HL007PA1]
 gi|313832772|gb|EFS70486.1| DNA gyrase, B subunit [Propionibacterium acnes HL056PA1]
 gi|313839631|gb|EFS77345.1| DNA gyrase, B subunit [Propionibacterium acnes HL086PA1]
 gi|314963864|gb|EFT07964.1| DNA gyrase, B subunit [Propionibacterium acnes HL082PA1]
 gi|314975206|gb|EFT19301.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA1]
 gi|314977620|gb|EFT21715.1| DNA gyrase, B subunit [Propionibacterium acnes HL045PA1]
 gi|314985195|gb|EFT29287.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA1]
 gi|315079002|gb|EFT51014.1| DNA gyrase, B subunit [Propionibacterium acnes HL053PA2]
 gi|315081489|gb|EFT53465.1| DNA gyrase, B subunit [Propionibacterium acnes HL078PA1]
 gi|315097154|gb|EFT69130.1| DNA gyrase, B subunit [Propionibacterium acnes HL038PA1]
 gi|327332508|gb|EGE74243.1| DNA gyrase, B subunit [Propionibacterium acnes HL096PA2]
 gi|327446714|gb|EGE93368.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA2]
 gi|327448844|gb|EGE95498.1| DNA gyrase, B subunit [Propionibacterium acnes HL043PA1]
 gi|327457406|gb|EGF04061.1| DNA gyrase, B subunit [Propionibacterium acnes HL092PA1]
 gi|328759820|gb|EGF73411.1| DNA gyrase, B subunit [Propionibacterium acnes HL099PA1]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|313765016|gb|EFS36380.1| DNA gyrase, B subunit [Propionibacterium acnes HL013PA1]
 gi|313815427|gb|EFS53141.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA1]
 gi|313828992|gb|EFS66706.1| DNA gyrase, B subunit [Propionibacterium acnes HL063PA2]
 gi|314916223|gb|EFS80054.1| DNA gyrase, B subunit [Propionibacterium acnes HL005PA4]
 gi|314917490|gb|EFS81321.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA1]
 gi|314921826|gb|EFS85657.1| DNA gyrase, B subunit [Propionibacterium acnes HL050PA3]
 gi|314930909|gb|EFS94740.1| DNA gyrase, B subunit [Propionibacterium acnes HL067PA1]
 gi|314955295|gb|EFS99700.1| DNA gyrase, B subunit [Propionibacterium acnes HL027PA1]
 gi|314959168|gb|EFT03270.1| DNA gyrase, B subunit [Propionibacterium acnes HL002PA1]
 gi|314969073|gb|EFT13171.1| DNA gyrase, B subunit [Propionibacterium acnes HL037PA1]
 gi|315099333|gb|EFT71309.1| DNA gyrase, B subunit [Propionibacterium acnes HL059PA2]
 gi|315102327|gb|EFT74303.1| DNA gyrase, B subunit [Propionibacterium acnes HL046PA1]
 gi|315109856|gb|EFT81832.1| DNA gyrase, B subunit [Propionibacterium acnes HL030PA2]
 gi|327454261|gb|EGF00916.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA3]
 gi|328756019|gb|EGF69635.1| DNA gyrase, B subunit [Propionibacterium acnes HL087PA1]
 gi|328758863|gb|EGF72479.1| DNA gyrase, B subunit [Propionibacterium acnes HL025PA2]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 65  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 116


>gi|313681376|ref|YP_004059114.1| integral membrane sensor signal transduction histidine kinase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154236|gb|ADR32914.1| integral membrane sensor signal transduction histidine kinase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 439

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 18  EIIE-----RPSIAIKELIENSLDA--ESSRVETVIA---GGGKSFFQITDNGFGMTSEE 67
           E+I        S  +  LI N+ DA    S  + ++     G ++  ++ DNG G+ S+ 
Sbjct: 325 EVIVFGKKNELSQVLLALISNASDALRGVSEPKIILRSNRNGSEAMIRLEDNGSGIPSDV 384

Query: 68  IPMAVQRHCTSK 79
           +    + + T+K
Sbjct: 385 LGKIFEPYVTTK 396


>gi|289427505|ref|ZP_06429218.1| DNA gyrase, B subunit [Propionibacterium acnes J165]
 gi|289159435|gb|EFD07626.1| DNA gyrase, B subunit [Propionibacterium acnes J165]
 gi|332674408|gb|AEE71224.1| DNA gyrase subunit B [Propionibacterium acnes 266]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 70  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 121


>gi|282853046|ref|ZP_06262383.1| DNA gyrase, B subunit [Propionibacterium acnes J139]
 gi|282582499|gb|EFB87879.1| DNA gyrase, B subunit [Propionibacterium acnes J139]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 70  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 121


>gi|289424273|ref|ZP_06426056.1| DNA gyrase, B subunit [Propionibacterium acnes SK187]
 gi|295129538|ref|YP_003580201.1| DNA gyrase, B subunit [Propionibacterium acnes SK137]
 gi|289154970|gb|EFD03652.1| DNA gyrase, B subunit [Propionibacterium acnes SK187]
 gi|291375904|gb|ADD99758.1| DNA gyrase, B subunit [Propionibacterium acnes SK137]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 70  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 121


>gi|254472258|ref|ZP_05085658.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062]
 gi|211958541|gb|EEA93741.1| DNA gyrase, B subunit [Pseudovibrio sp. JE062]
          Length = 817

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 27/251 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A  +  V   +   G     +TDNG G+      EE   A +     
Sbjct: 56  VYEVVDNSIDEALAGHADYVTVTLNADG--SVTVTDNGRGIPVDIHPEEGISAAEVIMTQ 113

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   +   + + G  G  +  + A+S    L +     ++        S   +  
Sbjct: 114 LHAGGKFDSNSYKV-SGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAGPLEV 172

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           V       GT V         P+   F K+E  + + +   +R +A          +  +
Sbjct: 173 VGDAPGKSGTEVTF------TPSPETFTKTE-FDYDTLEHRLRELAFLNSGARIILTDNR 225

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                +      G     +  +           +   + +  +        +N       
Sbjct: 226 GVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGITVEVA-MWWNSSYHENV 284

Query: 251 YVFINGRTVQD 261
             F N    +D
Sbjct: 285 LCFTNNIPQRD 295


>gi|163789020|ref|ZP_02183464.1| DNA topoisomerase IV, subunit B [Flavobacteriales bacterium ALC-1]
 gi|159875684|gb|EDP69744.1| DNA topoisomerase IV, subunit B [Flavobacteriales bacterium ALC-1]
          Length = 619

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 71/220 (32%), Gaps = 35/220 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++NS+D     A    +E  I G       + D G G+   ++   V +  T    
Sbjct: 46  LKEVLDNSIDEFVMGAG-KSIEISIQG---ERVIVRDYGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -SKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            SK    S   + + T      A+ ++ +   +   +R  ++ +        +    +  
Sbjct: 102 DSKAFKKSVGLNGVGTK-----AVNALSSYFRVE-STRDGKSASAEFELGELKDQEFLED 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V             +  K+ +     +  +++      P ++       + +
Sbjct: 156 TSRRKGTKVSFV-------PDDSIFKNYKYRNEYVVKMLKNYVYLNPGLTIVFNGEKYFS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
               +  ++      +    I  + G+D          + 
Sbjct: 209 ENGLKDLLSENINESDMLYPIIHLRGDDIEVAITHSKTQY 248


>gi|19909747|dbj|BAB87069.1| DNA gyrase subunit B [bacterium MBIC3369]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 27/251 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A  +  V   +   G     +TDNG G+      EE   A +     
Sbjct: 7   VYEVVDNSIDEALAGHADYVTVTLNADG--SVTVTDNGRGIPVDIHPEEGISAAEVIMTQ 64

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   +   + + G  G  +  + A+S    L +     ++        S   +  
Sbjct: 65  LHAGGKFDSNSYKV-SGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAAPLEV 123

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           V       GT V         P+   F K+E  + + +   +R +A          +  +
Sbjct: 124 VGDAPGKSGTEVTF------TPSPETFTKTE-FDYDTLEHRLRELAFLNSGARIILTDNR 176

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                +      G     +  +           +   + +  +        +N       
Sbjct: 177 GVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGITVEVA-MWWNSSYHENV 235

Query: 251 YVFINGRTVQD 261
             F N    +D
Sbjct: 236 LCFTNNIPQRD 246


>gi|19909745|dbj|BAB87068.1| DNA gyrase subunit B [bacterium MBIC3368]
          Length = 296

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 27/251 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ----- 73
           + E+++NS+D   A  +  V   +   G     +TDNG G+      EE   A +     
Sbjct: 10  VYEVVDNSIDEALAGHADYVTVTLNADG--SVTVTDNGRGIPVDIHPEEGISAAEVIMTQ 67

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISS 130
            H   K   +   + + G  G  +  + A+S    L +     ++        S   +  
Sbjct: 68  LHAGGKFDSNSYKV-SGGLHGVGVSVVNALSTTLDLRIYRNDKEHFIRFHHGESAAPLEV 126

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
           V       GT V         P+   F K+E  + + +   +R +A          +  +
Sbjct: 127 VGDAPGKSGTEVTF------TPSPETFTKTE-FDYDTLEHRLRELAFLNSGARIILTDNR 179

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
                +      G     +  +           +   + +  +        +N       
Sbjct: 180 GVEPHVEELYYEGGLEAFVRYLDRAKHPLIEEPVTMMAEKDGITVEVA-MWWNSSYHENV 238

Query: 251 YVFINGRTVQD 261
             F N    +D
Sbjct: 239 LCFTNNIPQRD 249


>gi|50841503|ref|YP_054730.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
 gi|50839105|gb|AAT81772.1| DNA gyrase subunit B [Propionibacterium acnes KPA171202]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 21  ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER     + E+++NS+D   A     ++  +     ++ Q+TDNG G+  +E P
Sbjct: 70  ERGLHHCVYEIVDNSVDEAMAGYCDTIQVELLDD--NWCQVTDNGRGIPVKEHP 121


>gi|241762950|ref|ZP_04761012.1| ATP-binding region, ATPase-like protein [Acidovorax delafieldii
          2AN]
 gi|241367902|gb|EER62121.1| ATP-binding region, ATPase-like protein [Acidovorax delafieldii
          2AN]
          Length = 538

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 27 IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
          + EL++N+  A +  +        +   +I D+G G+  E+    +  H
Sbjct: 27 VTELLQNARRAGARHIAVD-HLAEERVLRIRDDGRGI--EDFQKLLSFH 72


>gi|153806301|ref|ZP_01958969.1| hypothetical protein BACCAC_00557 [Bacteroides caccae ATCC 43185]
 gi|149130978|gb|EDM22184.1| hypothetical protein BACCAC_00557 [Bacteroides caccae ATCC 43185]
          Length = 681

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     +   +   GK    I+D+G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTIHVEL---GKDTITISDHGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++       
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYRDGAQ 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AVKWTCD 147


>gi|154249648|ref|YP_001410473.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153584|gb|ABS60816.1| DNA gyrase, B subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A       ++  I   G    ++ DNG G+  +
Sbjct: 55 VYEIVDNSIDEALQGFCDTIKVTIKSDG--SVEVEDNGRGIPVD 96


>gi|91213885|ref|YP_543871.1| hypothetical protein UTI89_C4937 [Escherichia coli UTI89]
 gi|110644678|ref|YP_672408.1| hypothetical protein ECP_4571 [Escherichia coli 536]
 gi|191170708|ref|ZP_03032260.1| histidine kinase [Escherichia coli F11]
 gi|300974518|ref|ZP_07172634.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|23954252|emb|CAD42049.1| hypothetical protein [Escherichia coli]
 gi|91075459|gb|ABE10340.1| hypothetical protein UTI89_C4937 [Escherichia coli UTI89]
 gi|110346270|gb|ABG72507.1| hypothetical protein ECP_4571 [Escherichia coli 536]
 gi|190908932|gb|EDV68519.1| histidine kinase [Escherichia coli F11]
 gi|300308873|gb|EFJ63393.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
          Length = 986

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 28/113 (24%)

Query: 25  IAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----S 78
            A+ EL +N+ DA +  VE              + D+G GMT++E     +R  T    S
Sbjct: 24  TALSELFKNAHDAYADNVEVDFFRKEN---LLILRDDGLGMTTDEFE---ERWLTIGTSS 77

Query: 79  KISDDFSNI------HTFGFR---GEA----LPSIGAVS-HLTLMSRPPQNNT 117
           K+ DD   I          FR   GE     L SI A+   + +++R  ++N 
Sbjct: 78  KLIDD-DAINKPAVDSNKAFRPIMGEKGIGRL-SIAAIGPQVLVLTRAKRDNE 128


>gi|83954576|ref|ZP_00963287.1| hypothetical protein NAS141_15183 [Sulfitobacter sp. NAS-14.1]
 gi|83840860|gb|EAP80031.1| hypothetical protein NAS141_15183 [Sulfitobacter sp. NAS-14.1]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 17  GEIIERPSIAIKELIENSLDAES---SRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           GE I         L+EN+L       S +    +A  G +   + D+G G+  +    A 
Sbjct: 350 GEAITN-------LLENALSHGGPGLSAIRVSTVAEAGYAVLTVQDDGIGIPKDSTQAAF 402

Query: 73  QRH 75
           QR 
Sbjct: 403 QRF 405


>gi|83944021|ref|ZP_00956478.1| putative two-component sensor histidine kinase protein
           [Sulfitobacter sp. EE-36]
 gi|83845268|gb|EAP83148.1| putative two-component sensor histidine kinase protein
           [Sulfitobacter sp. EE-36]
          Length = 456

 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 17  GEIIERPSIAIKELIENSLDAES---SRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           GE I         L+EN+L       S +    +A  G +   + D+G G+  +    A 
Sbjct: 350 GEAITN-------LLENALSHGGPGISAIRVSTVAEAGYAVLTVQDDGIGIPKDSTQAAF 402

Query: 73  QRH 75
           QR 
Sbjct: 403 QRF 405


>gi|324999381|ref|ZP_08120493.1| integral membrane sensor signal transduction histidine kinase
           [Pseudonocardia sp. P1]
          Length = 508

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 21  ERPSIAIKELIENSLDAES-------SRVETVIAGG--GKSFFQITDNGFGMTSEEIPMA 71
            R +  +  L+     A +       + V   +     G+   ++ D+G G+  E +P  
Sbjct: 397 HRLAQVVTNLL-----ANARTHTPPGTSVTVGLDRPAPGRVRLRVGDDGPGIPPEVLPRV 451

Query: 72  VQRHC 76
            +R  
Sbjct: 452 FERFA 456


>gi|301059883|ref|ZP_07200774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446033|gb|EFK09907.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 608

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 30  LIENSLDA-----ESSRVETVIA----GGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+LDA         +          GG++   Q+ D G G+   ++        T+K
Sbjct: 503 LINNALDAMEKTGG--NIAISTKIVSGHGGQNIQIQVADEGTGIPESDLIRIFDPFYTTK 560


>gi|323342250|ref|ZP_08082482.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463362|gb|EFY08556.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N +D   A  ++ +   +     +   ++DNG G+ 
Sbjct: 46 EIVDNGIDEALAGFATEIIVNVDKD--NVISVSDNGRGIP 83


>gi|257462460|ref|ZP_05626872.1| DNA gyrase subunit B [Fusobacterium sp. D12]
 gi|317060117|ref|ZP_07924602.1| DNA gyrase subunit B [Fusobacterium sp. D12]
 gi|313685793|gb|EFS22628.1| DNA gyrase subunit B [Fusobacterium sp. D12]
          Length = 638

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   +R+   I        Q+ DNG G+  +
Sbjct: 40 EVVDNSVDEALAGYCNRITVSILPDNI--IQVEDNGRGIPVD 79


>gi|254451957|ref|ZP_05065394.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238]
 gi|198266363|gb|EDY90633.1| DNA gyrase, B subunit [Octadecabacter antarcticus 238]
          Length = 775

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 80/252 (31%), Gaps = 29/252 (11%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAV 72
           + E+++N +D   A  +  V   I   G     ++DNG G+           + E+ +  
Sbjct: 16  VYEVVDNGIDEALAGHADAVNVKIHDDG--SISVSDNGRGIPVGIHEGEGVSAAEV-IMT 72

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSV 131
           Q H   K   +   + + G  G  +  + A+S  L L          A+           
Sbjct: 73  QLHAGGKFDSNSYKV-SGGLHGVGVSVVNALSDYLELRIWRNGKEHYARFEGGFTVKHLE 131

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
                   T  EVR       A L+   +       +   +R +A     V    +  + 
Sbjct: 132 VVADCGDRTGTEVR-----FLASLDTFSNRDFYFETLEKRLRELAFLNSGVRIILTDERP 186

Query: 192 NRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
             + ++    +G   E +  +       +   + +  + +EI ++       +N      
Sbjct: 187 AEHLVSELYYDGGVKEFVKYLDRSKTSILPEPIYVIGERDEIVVEVAM---WWNDSYNEM 243

Query: 250 FYVFINGRTVQD 261
              F N    +D
Sbjct: 244 VLPFTNNIPQRD 255


>gi|40019241|emb|CAE92283.1| DNA gyrase subunit B [Fusobacterium necrophorum]
          Length = 83

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   +R+   I        Q+ DNG G+  +
Sbjct: 13 EVVDNSVDEALAGYCNRITVSILPDNI--IQVEDNGRGIPVD 52


>gi|154245817|ref|YP_001416775.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2]
 gi|154159902|gb|ABS67118.1| DNA gyrase, B subunit [Xanthobacter autotrophicus Py2]
          Length = 813

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TD+G G+ ++
Sbjct: 48 VYEVVDNAIDEALAGWAKEVTVTLNADG--SVTVTDDGRGIPTD 89


>gi|153948998|ref|YP_001401784.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758]
 gi|152960493|gb|ABS47954.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758]
          Length = 604

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 33  NSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N++ A     +  +   +    K    + D G G+ +E++      + T+K
Sbjct: 493 NAIQAMGRAGALEIALALVEESKLRISVIDTGKGIRAEDLENIFNPYFTTK 543


>gi|187927115|ref|YP_001897602.1| DNA gyrase subunit B [Ralstonia pickettii 12J]
 gi|241661628|ref|YP_002979988.1| DNA gyrase subunit B [Ralstonia pickettii 12D]
 gi|309780180|ref|ZP_07674931.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA]
 gi|187724005|gb|ACD25170.1| DNA gyrase, B subunit [Ralstonia pickettii 12J]
 gi|240863655|gb|ACS61316.1| DNA gyrase, B subunit [Ralstonia pickettii 12D]
 gi|308920883|gb|EFP66529.1| DNA gyrase, B subunit [Ralstonia sp. 5_7_47FAA]
          Length = 842

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + ++  I     +   + DNG G+ 
Sbjct: 54 EVLDNSIDEALAGHCTEIQVTIHTD--NSISVIDNGRGIP 91


>gi|115499633|dbj|BAF33490.1| DNA gyrase subunit B [Listonella anguillarum]
          Length = 804

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 78/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     S   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--SSVSVSDDGRGIPTDLHEEEQVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++         Q    G   + +  V 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVLLTIYRNGAIHTQTYCHGVPQAPLAVVG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T   +R      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 ETDKTGTTLRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKLF-DEREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +       +    +  S             +N G     Y F N
Sbjct: 213 KDHFRYEGGIKAFVGHLNRNKTPIHEKVFHFSSERDDGITVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|86750095|ref|YP_486591.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2]
 gi|86573123|gb|ABD07680.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris HaA2]
          Length = 684

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  +  ++DNG G+  +
Sbjct: 77  EVIDNSMDEALAGHATFIEVELGADG--YLTVSDNGRGIPVD 116


>gi|313140937|ref|ZP_07803130.1| signal transduction histidine kinase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133447|gb|EFR51064.1| signal transduction histidine kinase [Bifidobacterium bifidum NCIMB
           41171]
          Length = 422

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           A+++++EN++       +  V   ++  GK+   ++ D+G G+   ++P   +R  
Sbjct: 316 AVRKMVENAIVYSHPGGAVGVSVALSSDGKNAVVRVIDHGEGVPKADLPRIFERFY 371


>gi|312869236|ref|ZP_07729408.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3]
 gi|311095257|gb|EFQ53529.1| DNA gyrase, B subunit [Lactobacillus oris PB013-T2-3]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A   + +   +     +   + DNG G+  +
Sbjct: 52 EIVDNGIDEALAGFCTEINVEVNPD--NSITVRDNGRGIPVD 91


>gi|302388606|ref|YP_003824427.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
 gi|302199234|gb|ADL06804.1| DNA gyrase subunit B [Thermosediminibacter oceani DSM 16646]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   I   G     + D+G G+ 
Sbjct: 41 VYEVVDNSIDEALAGFCKNILVTINKDG--SITVDDDGRGIP 80


>gi|294781815|ref|ZP_06747148.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481925|gb|EFG29693.1| DNA gyrase, B subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 79/206 (38%), Gaps = 29/206 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A   ++++  I        ++ DNG G+ ++          EI + V  
Sbjct: 43  EIVDNSVDEALAGYCNKIDVKILPDNI--IEVVDNGRGIPTDIHPKYGKSALEIVLTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  +D   + + G  G  +  + A+S  L +  R   N    +      +      
Sbjct: 100 HAGGKFENDNYKV-SGGLHGVGVSVVNALSEWLEVEVRKEGNVYYQKYHRGKPEEDVKII 158

Query: 134 VAMNP---GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
            +      GT V  +       A  +  ++       +++ ++ +A     ++ T S ++
Sbjct: 159 GSCEANEHGTTVRFK-------ADGDIFETLVYNYFTLSNRLKELAYLNRGLTITLSDLR 211

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED 216
               K      NG   + +++++ E+
Sbjct: 212 KEEKKEETYKFNGGILDFLNEIVKEE 237


>gi|291541931|emb|CBL15041.1| Signal transduction histidine kinase [Ruminococcus bromii L2-63]
          Length = 404

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  +++N +   D     V          S   I DNG G++ +++P   +R  
Sbjct: 302 AVSNIVKNCIEHTDGG--YVRISAERNSMYSEITIRDNGCGISPKDLPHIFERFY 354


>gi|269118649|ref|YP_003306826.1| DNA gyrase subunit beta [Sebaldella termitidis ATCC 33386]
 gi|268612527|gb|ACZ06895.1| DNA gyrase, B subunit [Sebaldella termitidis ATCC 33386]
          Length = 642

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ---------RH 75
           E+++NS+D   A     ++  +        ++ DNG G+  E      +          H
Sbjct: 41  EVVDNSVDEALAGFCDTIKVRVLEDNI--IEVIDNGRGIPVEMHEKMGKSTLEVVLTVLH 98

Query: 76  CTSKISDDFSNIH 88
              K ++D   + 
Sbjct: 99  AGGKFNNDNYKVS 111


>gi|295690073|ref|YP_003593766.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
 gi|295431976|gb|ADG11148.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
          Length = 474

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 18  EIIE-RPSIAIKELIENSLD-A----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
            +IE  P  A+K L++N +D A     ++R        G +  +I D+G G+   E+   
Sbjct: 363 TVIEGDPV-ALKRLVQNLIDNALKYGGAARGRVYAED-GMAIIEIDDDGPGVPPAELERV 420

Query: 72  VQRHC 76
            +   
Sbjct: 421 FEPFY 425


>gi|259502126|ref|ZP_05745028.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          antri DSM 16041]
 gi|259169939|gb|EEW54434.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          antri DSM 16041]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A   + +   +     +   + DNG G+  +
Sbjct: 52 EIVDNGIDEALAGFCTEINVEVNPD--NSITVRDNGRGIPVD 91


>gi|224283783|ref|ZP_03647105.1| Signal transduction histidine kinase [Bifidobacterium bifidum NCIMB
           41171]
          Length = 406

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           A+++++EN++       +  V   ++  GK+   ++ D+G G+   ++P   +R  
Sbjct: 300 AVRKMVENAIVYSHPGGAVGVSVALSSDGKNAVVRVIDHGEGVPKADLPRIFERFY 355


>gi|218885320|ref|YP_002434641.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756274|gb|ACL07173.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 722

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 30  LIENSLDAES----------SRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           L+ NSLDA +            +      + GG   F + D G GM+ E+   A +   T
Sbjct: 515 LVLNSLDALAQCPQPAAGVGREIHISSMASDGGVWVF-VRDTGPGMSREQREQAFEPFYT 573

Query: 78  SK 79
           +K
Sbjct: 574 TK 575


>gi|107026469|ref|YP_623980.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|116692343|ref|YP_837876.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
 gi|105895843|gb|ABF79007.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|116650343|gb|ABK10983.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
          Length = 474

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   I+  G ++   + DNG G+ ++E     +R  
Sbjct: 367 LIDNAIRYAGDHAVITVRISRDGEQARLDVIDNGPGIPADERDAVFERFH 416


>gi|219669960|ref|YP_002460395.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540220|gb|ACL21959.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 166

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 23  PSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
              A++ ++ N++    D     +   +   G   F ++D G G+  +++P   + + T 
Sbjct: 61  LQQAVENIVANAIRHSNDNGKIGISITVEK-GMYHFAVSDTGSGIEPQDLPHIFEPYYTK 119

Query: 79  K 79
           K
Sbjct: 120 K 120


>gi|226944613|ref|YP_002799686.1| sensory histidine protein kinase [Azotobacter vinelandii DJ]
 gi|226719540|gb|ACO78711.1| sensory histidine protein kinase [Azotobacter vinelandii DJ]
          Length = 600

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 8/55 (14%)

Query: 33  NSLDAE-------SSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N++DA         + +      G G+   ++ D G G++ +E+        TSK
Sbjct: 505 NAIDANREAHPGQPTDILLTARAGDGRVAIEVRDCGPGLSDDELERVFTPFYTSK 559


>gi|260599300|ref|YP_003211871.1| DNA topoisomerase IV subunit B [Cronobacter turicensis z3032]
 gi|260218477|emb|CBA33631.1| DNA topoisomerase 4 subunit B [Cronobacter turicensis z3032]
          Length = 630

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 23/207 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHARRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  +              + 
Sbjct: 89  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVKRDGQIYNIAFENGEKV 147

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSFT 185
                               +        F  S +   + +T +++  A+  P  +++F 
Sbjct: 148 KELSVVGTCPKRQTGTSVHFW----PDEKFFDSPRFSVSRLTHLLKAKAVLCPGVEINFK 203

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQV 212
                + +        N    E ++ +
Sbjct: 204 DQVNNTEQRWCYLDGLNDYLCEAVNGL 230


>gi|224477408|ref|YP_002635014.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222422015|emb|CAL28829.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 593

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 13/54 (24%)

Query: 30  LIENSL---------DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L+EN++         D   + ++ ++    G+ + ++ DNG G+  +++P   +
Sbjct: 480 LVENAIRHAFKDRRTD---NHIDVIVRDEDGQLYLEVKDNGIGIPKDKLPYIGK 530


>gi|139438734|ref|ZP_01772218.1| Hypothetical protein COLAER_01221 [Collinsella aerofaciens ATCC
           25986]
 gi|133775814|gb|EBA39634.1| Hypothetical protein COLAER_01221 [Collinsella aerofaciens ATCC
           25986]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 23  PSIAIKELIENSL-----DAESSRVETVIAGGGKS--FFQITDNGFGMTS 65
           P+  I+ ++EN++     D ++ R++  +   G+      + DNG GM  
Sbjct: 326 PAFVIQPIVENAVRHGMGDDDALRIDVTVHQDGEDAILIAVADNGVGMDE 375


>gi|294813745|ref|ZP_06772388.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326344|gb|EFG07987.1| DNA gyrase subunit B, novobiocin-sensitive [Streptomyces
           clavuligerus ATCC 27064]
          Length = 693

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 74  VYEVVDNSVDEALAGHADTIQVTILADGG---VRVVDNGRGIP 113


>gi|294012089|ref|YP_003545549.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292675419|dbj|BAI96937.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 439

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           L++N+ +A ++ ++ ++     S    + DNG G +   +    + + +SK  +
Sbjct: 338 LLDNAREAGATYIDLLVGRDCSSLNIAVRDNGSGFSQAMLEDFGKPYRSSKGKE 391


>gi|262038541|ref|ZP_06011910.1| sensory transduction histidine kinase [Leptotrichia goodfellowii
           F0264]
 gi|261747410|gb|EEY34880.1| sensory transduction histidine kinase [Leptotrichia goodfellowii
           F0264]
          Length = 530

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 13  QIAAGEIIERPSIAIKELIENSL---DAESSRVE-TVIAGGGKSFFQITDNGFGMTSEEI 68
           +I A   +     AI+ LIEN+    D   + +       G      + D G GMT E+ 
Sbjct: 393 KIKADTTL--LQQAIRALIENATKYSDKN-TNIYLISQKEGDFGRITVKDEGVGMTPEDS 449

Query: 69  PMAVQRHC 76
               +R  
Sbjct: 450 KRVFERFY 457


>gi|326442166|ref|ZP_08216900.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
          Length = 687

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 68  VYEVVDNSVDEALAGHADTIQVTILADGG---VRVVDNGRGIP 107


>gi|218514297|ref|ZP_03511137.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 38  ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +S +        G     I+D+G G+ +E++P+  QR+
Sbjct: 330 GTSEIRIAAWEETGNVRISISDDGVGIDAEDVPLLFQRY 368


>gi|254469391|ref|ZP_05082796.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062]
 gi|211961226|gb|EEA96421.1| DNA topoisomerase IV, B subunit [Pseudovibrio sp. JE062]
          Length = 698

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S ++  ++  G  +  ITDNG G+  +
Sbjct: 95  EVIDNSMDEAVAGHASWIDVSLSEDG--YLTITDNGRGIPID 134


>gi|254393574|ref|ZP_05008707.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
 gi|197707194|gb|EDY53006.1| DNA gyrase subunit B [Streptomyces clavuligerus ATCC 27064]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A  +  ++  I A GG    ++ DNG G+ 
Sbjct: 67  VYEVVDNSVDEALAGHADTIQVTILADGG---VRVVDNGRGIP 106


>gi|4996778|dbj|BAA78434.1| subunit B protein of DNA gyrase [bacterium rJ5]
          Length = 277

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   + V   + G G     +TDNG G+ +E
Sbjct: 13 EVVDNAIDEALAGYCTEVTVTLHGDG--SVAVTDNGRGIPTE 52


>gi|4996776|dbj|BAA78433.1| subunit B protein of DNA gyrase [bacterium rJ4]
          Length = 276

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   + V   + G G     +TDNG G+ +E
Sbjct: 13 EVVDNAIDEALAGYCTEVTVTLHGDG--SVAVTDNGRGIPTE 52


>gi|146276459|ref|YP_001166618.1| DNA topoisomerase IV subunit B [Rhodobacter sphaeroides ATCC 17025]
 gi|145554700|gb|ABP69313.1| DNA topoisomerase IV, B subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 663

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++R+E  +         I DNG G+  +
Sbjct: 59  VAEILDNSMDEAVAGHATRIEVELHAD--HSVTIRDNGRGIPVD 100


>gi|320353312|ref|YP_004194651.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121814|gb|ADW17360.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 982

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+ DA        +         +    I D G G+  EE+ +  Q   TSK
Sbjct: 876 LLTNAADA-CHHPGGMITITTWHDDQQVAIAIQDTGSGIGPEELELIFQPFYTSK 929


>gi|304317075|ref|YP_003852220.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778577|gb|ADL69136.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 27  IKELI----ENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           IKEL+    +N+L     D     ++  +    K+    I D+G G+  E+IP    R  
Sbjct: 350 IKELVRIILDNALKYTDFD---GNIKIFVEEVDKNVAIMIKDDGIGIPQEDIPYIFDRFY 406


>gi|282879060|ref|ZP_06287820.1| DNA topoisomerase IV subunit B [Prevotella buccalis ATCC 35310]
 gi|281298794|gb|EFA91203.1| DNA topoisomerase IV subunit B [Prevotella buccalis ATCC 35310]
          Length = 670

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 97/339 (28%), Gaps = 38/339 (11%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     +   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 69  LKEVIDNSIDEFKMKSG-DRIEIDVEEN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 125

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
                   + G  G  L ++ A+S H  + S                K           G
Sbjct: 126 DSKAFK-KSVGLNGVGLKAVNALSAHFEVKSYREGKVRSITFEKGEIKTDQTDKTKDETG 184

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYK 195
           T V                K+     +++  ++R        ++          ++    
Sbjct: 185 TYVYFE-------PDNTLFKNYSFHDDIVETMLRNYTYLNAGLTIMYNGRRIKSRNGLED 237

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +   +   +    I  VIG+D        N+   E                      F  
Sbjct: 238 LLNDNMTTDGLYPIVHVIGDDIEIAFTHTNQYGEEYHS---FVNGQHTTQGGTHQSAFKE 294

Query: 256 G------RTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIRF 308
                        +  + IR      + +    PV     +I        + P    I  
Sbjct: 295 HIAKTIKEFYDKNYEYTDIRNGLVAAVAINVEEPVFESQTKIKLG--STLMAPGGETIN- 351

Query: 309 RNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
                + +FI + +   ++      + VL  K+ +S H+
Sbjct: 352 ---KYVGDFIKREVDNYLHIHKEDCADVLETKIKASEHE 387


>gi|257095955|ref|YP_003169596.1| multi-sensor signal transduction histidine kinase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048479|gb|ACV37667.1| multi-sensor signal transduction histidine kinase [Candidatus
            Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1289

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 17   GEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIP 69
            G++I   +        N+L      AE+  +E V++  G     +   DNG G+ +E +P
Sbjct: 1165 GQVITNLAN-------NALVHGFEHAEAGVLEIVVSEPGNGRLTLSFRDNGCGIPAELLP 1217

Query: 70   MAVQRHCT 77
                   T
Sbjct: 1218 RIFDPFYT 1225


>gi|239625415|ref|ZP_04668446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519645|gb|EEQ59511.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 542

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 14/65 (21%)

Query: 18  EIIERPSIAIKELIENSL----DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           ++I         L++N++    D  SS +        G +  +++DNG G+  E      
Sbjct: 432 QVITN-------LVDNAIKYTPD-GSS-ITIKSYKDNGNAVIEVSDNGPGIPDESKDRIF 482

Query: 73  QRHCT 77
           Q   T
Sbjct: 483 QMFYT 487


>gi|262195457|ref|YP_003266666.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262078804|gb|ACY14773.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 707

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 4   RKLSEKIINQIAAGEII---ERPSIAIKELIENSL--DAESSRVETVIAGGGKSFF-QIT 57
           R +   + +++AA ++    +R    +  L+ N++   AE   V       G      + 
Sbjct: 447 RAIELDLSDELAASQVRCDRDRVMQVLGNLLGNAIKFTAEGGHVRLQAESEGPDVIFSVH 506

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDD 83
           D G G++SEE+P   +R+  S+  DD
Sbjct: 507 DTGCGISSEELPNLFERYWQSQHQDD 532


>gi|159036070|ref|YP_001535323.1| histidine kinase [Salinispora arenicola CNS-205]
 gi|157914905|gb|ABV96332.1| histidine kinase [Salinispora arenicola CNS-205]
          Length = 425

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 15/63 (23%)

Query: 23  PSIAIKELIENSL-----DAESSRVETVIAGGGKS----FFQITDNGFGMTSEEIPMAVQ 73
            + A+  L+EN++     D   + V       G         +TD G G+T  ++    +
Sbjct: 295 LATAVSNLVENAINYSGED---TTVRIT---AGLDDEHVTIAVTDQGIGITPGDVDRIFE 348

Query: 74  RHC 76
           R  
Sbjct: 349 RFY 351


>gi|153007484|ref|YP_001368699.1| DNA gyrase subunit B [Ochrobactrum anthropi ATCC 49188]
 gi|151559372|gb|ABS12870.1| DNA gyrase, B subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 807

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     +TDNG G+ ++
Sbjct: 44 VYEVVDNAIDEALAGHATLVTVALNPDG--SCTVTDNGRGIPTD 85


>gi|145351044|ref|XP_001419897.1| TRAP1, Heat Shock Protein 90 [Ostreococcus lucimarinus CCE9901]
 gi|144580130|gb|ABO98190.1| TRAP1, Heat Shock Protein 90 [Ostreococcus lucimarinus CCE9901]
          Length = 700

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 15/57 (26%)

Query: 27  IKELIENSLDA--ESSR-------------VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA  ++               ++     G      ++DNG GMT EE+
Sbjct: 90  LRELVSNASDALEKARHAALTETPNEEELAIKIATDEGEGKVLVVSDNGVGMTREEL 146


>gi|150396283|ref|YP_001326750.1| DNA topoisomerase IV subunit B [Sinorhizobium medicae WSM419]
 gi|150027798|gb|ABR59915.1| DNA topoisomerase IV, B subunit [Sinorhizobium medicae WSM419]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+NS+D   A  ++ ++  +   G  F  +TDNG G+  E  P 
Sbjct: 83  EVIDNSMDEAVAGHANFIDVNLDADG--FLTVTDNGRGIPVENHPK 126


>gi|73542353|ref|YP_296873.1| histidine kinase [Ralstonia eutropha JMP134]
 gi|72119766|gb|AAZ62029.1| histidine kinase [Ralstonia eutropha JMP134]
          Length = 638

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 2   KIRKLSEKIINQIAAGEII----ERPSIAIKELIENSLDAESSRVE--TVI---AGGGKS 52
           +I  +  ++  +I  G ++     R    +  L+ N+LDA + R +    +     G  +
Sbjct: 501 RIEDVQPQLQREIEPGLVVACDANRLEQVLVNLVGNALDAVAGRAQPMVSLHAHVSGSMA 560

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
              + DNG G++ +      +   T+K
Sbjct: 561 HLTVRDNGAGLSEDAFSQLFEPFFTTK 587


>gi|189499880|ref|YP_001959350.1| integral membrane sensor hybrid histidine kinase [Chlorobium
           phaeobacteroides BS1]
 gi|189495321|gb|ACE03869.1| integral membrane sensor hybrid histidine kinase [Chlorobium
           phaeobacteroides BS1]
          Length = 701

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 36  DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           DA    +   I  G   +   + D G G+ SE I    + + TS
Sbjct: 340 DAG---ISVRIEKGDSFNRVYVRDTGPGIPSENIGKLFEAYYTS 380


>gi|326575517|gb|EGE25442.1| DNA gyrase subunit B [Moraxella catarrhalis 101P30B1]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQDKFIL-STIRTAYAETIPL 278
               +D     S  R+A    +  
Sbjct: 285 NIPQKDGGTHLSGFRSALTRCLNH 308


>gi|326571823|gb|EGE21829.1| DNA gyrase subunit B [Moraxella catarrhalis BC7]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQDKFIL-STIRTAYAETIPL 278
               +D     S  R+A    +  
Sbjct: 285 NIPQKDGGTHLSGFRSALTRCLNH 308


>gi|326571722|gb|EGE21735.1| DNA gyrase subunit B [Moraxella catarrhalis BC8]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQDKFIL-STIRTAYAETIPL 278
               +D     S  R+A    +  
Sbjct: 285 NIPQKDGGTHLSGFRSALTRCLNH 308


>gi|326569033|gb|EGE19102.1| DNA gyrase subunit B [Moraxella catarrhalis BC1]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDTHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQDKFIL-STIRTAYAETIPL 278
               +D     S  R+A    +  
Sbjct: 285 NIPQKDGGTHLSGFRSALTRCLNH 308


>gi|326561746|gb|EGE12081.1| DNA gyrase subunit B [Moraxella catarrhalis 7169]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDTHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQDKFIL-STIRTAYAETIPL 278
               +D     S  R+A    +  
Sbjct: 285 NIPQKDGGTHLSGFRSALTRCLNH 308


>gi|326560704|gb|EGE11072.1| DNA gyrase subunit B [Moraxella catarrhalis 46P47B1]
 gi|326563089|gb|EGE13362.1| DNA gyrase subunit B [Moraxella catarrhalis 12P80B1]
 gi|326574364|gb|EGE24307.1| DNA gyrase subunit B [Moraxella catarrhalis CO72]
          Length = 819

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 24/264 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQDKFIL-STIRTAYAETIPL 278
               +D     S  R+A    +  
Sbjct: 285 NIPQKDGGTHLSGFRSALTRCLNH 308


>gi|323449256|gb|EGB05146.1| hypothetical protein AURANDRAFT_66655 [Aureococcus anophagefferens]
          Length = 2322

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 10  IINQIAAGEIIERPSIAIKELIENSLDAESSRVET-VIAGGGKSFFQITDNGFGMTSEEI 68
           + N I +G      +  + E IENS+   ++ VE  V+   GK    I D+G G+  E +
Sbjct: 114 VSNTINSG---VDTTTMLSESIENSVQHNATVVEIAVVRDEGK--ILIFDDGDGIPPELV 168

Query: 69  PMAVQRHCTSKISDD 83
               +    S + DD
Sbjct: 169 EAIAKPGA-STVRDD 182


>gi|320161180|ref|YP_004174404.1| hypothetical protein ANT_17780 [Anaerolinea thermophila UNI-1]
 gi|319995033|dbj|BAJ63804.1| hypothetical protein ANT_17780 [Anaerolinea thermophila UNI-1]
          Length = 186

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 33 NSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTS 78
          NS+ A +  +   +    +S      + D+G GM ++ +   V    TS
Sbjct: 14 NSVSANARNITIEVVEDTRSDLLTLVVKDDGKGMDAQMVQQVVDPFVTS 62


>gi|319784861|ref|YP_004144337.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170749|gb|ADV14287.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 652

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 21/91 (23%)

Query: 10  IINQIA-AGEIIERP---------SIAIK-E-----LIENSLDAESS----RVETVI-AG 48
           +  +I  +G  I RP         +  I+ E     L++N+LDA       R+E  +   
Sbjct: 520 LSGRIRDSGVTIVRPRGNASPVVMASRIRLEQILVNLLQNALDAMKDQPDPRIEIELAER 579

Query: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +    + DNG G+  E          T+K
Sbjct: 580 DDRVLISVRDNGPGLGPEAAGNLFMPFQTTK 610


>gi|260222154|emb|CBA31436.1| hypothetical protein Csp_F37520 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 434

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 23  PSIAIKELIENSL---DAESSRVETVIAGG---GKSF-FQITDNGFGMTSEEIPMAV--- 72
               +  LI N++   DA +  V   +  G   G+    ++ D+G G+  E+  +     
Sbjct: 313 LESILLNLISNAIKNTDAGAVYVGVRLRRGYRSGRQLCIEVRDSGRGIPVEQQALLFDAY 372

Query: 73  ----QRHC 76
                RH 
Sbjct: 373 RSFDDRHA 380


>gi|300023854|ref|YP_003756465.1| DNA topoisomerase IV subunit beta [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525675|gb|ADJ24144.1| DNA topoisomerase IV, B subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 669

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           E+I+NS+D   A  ++ +E  ++  G  F  +TDNG G+ 
Sbjct: 68  EVIDNSMDEAVAGHATWIEVELSADG--FLAVTDNGRGIP 105


>gi|188582557|ref|YP_001926002.1| DNA topoisomerase IV subunit B [Methylobacterium populi BJ001]
 gi|179346055|gb|ACB81467.1| DNA topoisomerase IV, B subunit [Methylobacterium populi BJ001]
          Length = 647

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  +S +E  +   G     +TDNG G+  +
Sbjct: 42 EVIDNSMDEAVAGHASFIEVELEETGA--LVVTDNGRGIPVD 81


>gi|197120815|ref|YP_002132766.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196170664|gb|ACG71637.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 509

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 18  EIIERPSIAIKELIENSLDAESSR-VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +++   +        N+L   + R V   +   GG++  ++ D G G+ + ++     R 
Sbjct: 383 QVLTNLAS-------NALKFGAGRPVTIALRREGGRAVLRVRDRGIGIPATDLERIFGRF 435


>gi|115381160|gb|ABI96229.1| DNA gyrase subunit B [Spiroplasma montanense]
          Length = 552

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 74/247 (29%), Gaps = 34/247 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQ-RH 75
           E+++N++D   A   + +  ++    ++   I DNG G+            +       H
Sbjct: 14  EILDNAVDEALAGFCNEITIILTD--ENEIIIQDNGRGIPIDIHPKTNKTTLETIFTVLH 71

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K ++D   I + G  G       AL     V  L L      N    Q    G   +
Sbjct: 72  AGGKFNEDTYKI-SGGLHGVGASVVNALS--VYVEALVL----RNNKIYHQKFSDGGTKA 124

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +         T   +       P    F ++   +   I   I+++A     + F     
Sbjct: 125 TSLKEIGVSDTNGTIIKFK---PDPKIFKETINFDFKTIQSKIKQLAFLNKGLKFFLYDQ 181

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
             ++  + F        + I ++       N       +    ++    I  +N      
Sbjct: 182 TKDKTTVYFF--EDGIKDYIKEINSGKEKINDKIFYISNKYEKIEAEIAI-QYNDSYDEN 238

Query: 250 FYVFING 256
            + F N 
Sbjct: 239 VFSFCNN 245


>gi|154486816|ref|ZP_02028223.1| hypothetical protein BIFADO_00644 [Bifidobacterium adolescentis
           L2-32]
 gi|154084679|gb|EDN83724.1| hypothetical protein BIFADO_00644 [Bifidobacterium adolescentis
           L2-32]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 17  GEIIERPSIAIKELIENSLDAES---SRVETVI---AGGGKSFFQITDNGFGMTSEEIPM 70
           GE I+  +   K L+EN++ A S     +   +     G K    + D G G+  +E   
Sbjct: 306 GEQIQ--AAVAK-LLENAI-AYSPDGKGITVSVKPNEDGTKVLLSVLDRGCGIAQKEQSR 361

Query: 71  AVQRHC 76
             +R  
Sbjct: 362 IFERFY 367


>gi|149191295|ref|ZP_01869550.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
 gi|148834893|gb|EDL51875.1| DNA topoisomerase IV subunit B [Vibrio shilonii AK1]
          Length = 252

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 29/207 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM      EE    + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKISGVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           +   + H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 89  LIFCKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEMAFENGNKV 147

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KV 182
           E+++        N GT V             ++  S       + + +R  A+  P  ++
Sbjct: 148 EELTVTGTCGRRNKGTSVHFW-------PDASYFDSANFSVTRLINNLRAKAVLCPGLEI 200

Query: 183 SFTFSTIKSNRYKMNFQSTNGNFPERI 209
           +FT      +              E +
Sbjct: 201 TFTDKVNNKDYKWFYEDGLKDYLAECV 227


>gi|153952676|ref|YP_001393441.1| DNA gyrase subunit B [Clostridium kluyveri DSM 555]
 gi|219853349|ref|YP_002470471.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
 gi|146345557|gb|EDK32093.1| GyrB1 [Clostridium kluyveri DSM 555]
 gi|219567073|dbj|BAH05057.1| DNA gyrase B subunit [Clostridium kluyveri NBRC 12016]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    +++ VI     +   + DNG GM 
Sbjct: 43 VYEIVDNSIDEALAGYCDKIDVVIHED--NSVTVADNGRGMP 82


>gi|115430081|ref|NP_001068577.1| ZCWCC3 protein [Danio rerio]
 gi|115313654|gb|AAI24123.1| Zgc:152774 [Danio rerio]
 gi|182890114|gb|AAI64260.1| Zgc:152774 protein [Danio rerio]
          Length = 306

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 23 PSIAIKELIENSLDAE--SSRVETVIAGGGKSFFQITD--------NGFGMTSEEIPMAV 72
          P  A+ ELI+N+ D    +  +   +         + D        NG GMT  ++   +
Sbjct: 29 PFSAVAELIDNASDPGVTAKNIWIDV-------VTVRDQLCLSFTDNGSGMTPSKLHKML 81

Query: 73 QRHCTSK 79
              T K
Sbjct: 82 SFGFTEK 88


>gi|119025399|ref|YP_909244.1| sensor protein [Bifidobacterium adolescentis ATCC 15703]
 gi|118764983|dbj|BAF39162.1| sensor protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 419

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 17  GEIIERPSIAIKELIENSLDAES---SRVETVI---AGGGKSFFQITDNGFGMTSEEIPM 70
           GE I+  +   K L+EN++ A S     +   +     G K    + D G G+  +E   
Sbjct: 306 GEQIQ--AAVAK-LLENAI-AYSPDGKGITVSVKPNEDGTKVLLSVLDRGCGIAQKEQSR 361

Query: 71  AVQRHC 76
             +R  
Sbjct: 362 IFERFY 367


>gi|120555705|ref|YP_960056.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8]
 gi|120325554|gb|ABM19869.1| DNA topoisomerase IV subunit B [Marinobacter aquaeolei VT8]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  + R++ V+     +   + D+G GM  +
Sbjct: 32 RPNHLAQEVIDNSVDEALAGHARRIDVVLHSD--NSLSVEDDGRGMPVD 78


>gi|313681133|ref|YP_004058871.1| DNA gyrase subunit b [Sulfuricurvum kujiense DSM 16994]
 gi|313153993|gb|ADR32671.1| DNA gyrase subunit B [Sulfuricurvum kujiense DSM 16994]
          Length = 771

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   +   G +   ++DNG G+ ++
Sbjct: 40 EVVDNSIDEAMAGHCDTITVTLTKNGTAI--VSDNGRGIPTD 79


>gi|312622853|ref|YP_004024466.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203320|gb|ADQ46647.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 30  LIENS----L----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIP 69
           L+EN+    +    D+   +V   +  GG +   ++ DNG GM  +++ 
Sbjct: 505 LVENACIHGIEEKEDSG--KVIVKVKKGGINLIIEVADNGIGMDEKKLE 551


>gi|251791330|ref|YP_003006051.1| DNA topoisomerase IV subunit B [Dickeya zeae Ech1591]
 gi|247539951|gb|ACT08572.1| DNA topoisomerase IV, B subunit [Dickeya zeae Ech1591]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 78/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            ++++        N GT V             +F  S +     +T +++  A+  P V 
Sbjct: 148 VQELTVTGTCGRRNTGTRVHFW-------PDASFFDSPRFSVLSLTHLLKAKAVLCPGVE 200

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
             F    ++  +       G   + + +
Sbjct: 201 IVFKDGVNDTEQ--RWCYQGGLSDYLCE 226


>gi|226225802|ref|YP_002759908.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226088993|dbj|BAH37438.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 672

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA---ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA     + +     G G      + D G GM+ E +  A +   T+K
Sbjct: 438 LVQNAIDAMPEGGT-LTVRCWGEGTDACLSVQDTGVGMSEEVLERAFEPFFTTK 490


>gi|224368296|ref|YP_002602459.1| putative response regulator protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691012|gb|ACN14295.1| putative response regulator protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 42  VETVIAGG--GKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           +         GKS   ++ DNG G+  + +    +   T
Sbjct: 320 ITIRSKNSEDGKSIVVEVEDNGCGIHKDNLKKIFEPFYT 358


>gi|300784917|ref|YP_003765208.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|7339514|emb|CAB82847.1| putative histidine kinase [Amycolatopsis mediterranei]
 gi|14572577|emb|CAC42479.2| histidine kinase [Amycolatopsis mediterranei]
 gi|299794431|gb|ADJ44806.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 469

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 22  RPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R  I +  L+ N+L   + RVE V+    G     +TD+G G+ +E +P    R  
Sbjct: 364 RLDIVVANLVGNALRHGAPRVEVVLRKELGDVVLTVTDHGPGIPAEALPKVFDRFT 419


>gi|332879895|ref|ZP_08447580.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682106|gb|EGJ55018.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 615

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 103/346 (29%), Gaps = 48/346 (13%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A    ++  I+       ++ D G G+   ++   V +  T  K 
Sbjct: 45  LKEVLDNSIDEFIMGAG-KTIDVKISDN---KVEVRDYGRGIPLGKVVDVVSKMNTGGKY 100

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMS-RPPQNNTGAQIAISGEKISSVRP 133
                   + G  G       AL S     +  + S R  Q  + +      ++ S +  
Sbjct: 101 DSRAFK-KSIGLNGVGTKAVNALSS-----YFKVESVRDNQTKSASFERGIIKEESPIEE 154

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
                GT V                K+ +     +  +++      P ++       + +
Sbjct: 155 TQKRRGTSV-------AFIPDDTIFKNFKFRNEYVVRMLKNYVYLNPGLTINYNGEKYYS 207

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
               +  +   +   +F   I  + GED          + +E       G          
Sbjct: 208 ENGLKDLLTENNNEEDFLYPIIHLKGEDIEVAISHSKTQYSEEYYSFVNGQN--TTQGGT 265

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVNVHPAKS---- 304
               F        +               + +  +  L +++    V  +    K     
Sbjct: 266 HLNAFKEAYVKTIRDFYKKNFDPSD----VRKSIIAGLSIKVM-EPVFESQTKTKLGSTE 320

Query: 305 --YIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQD 348
                    T I +F+ + +   ++K      ++L K M +   ++
Sbjct: 321 MGEGMPSVRTYINDFVTRHLDDYLHKNNEVADAILRKIMEAQRERE 366


>gi|330898605|gb|EGH30024.1| DNA gyrase subunit B [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 173

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +  +I         + DNG G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCDDISIIIHPD--ESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S L L++         Q  + G     ++ V 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYVHGVPQEPMKIVG 160

Query: 136 MNPGTIVEVR 145
            +  T  ++ 
Sbjct: 161 ESDSTGTQIH 170


>gi|311070611|ref|YP_003975534.1| YvrG protein [Bacillus atrophaeus 1942]
 gi|310871128|gb|ADP34603.1| YvrG [Bacillus atrophaeus 1942]
          Length = 469

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           LI N+L   D+   ++   +    ++   I DNG G+  EE+     R+
Sbjct: 375 LILNALVHNDSN-VKIVVHLEKKERTHITIKDNGKGIEKEEVDKIFDRY 422


>gi|302555630|ref|ZP_07307972.1| two component system histidine kinase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473248|gb|EFL36341.1| two component system histidine kinase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 552

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             +  +  L++N++DA +      VE  +          + D+G G+  E          
Sbjct: 435 DLATVVGNLVDNAVDAAAPDGERWVEVALRQDASSVEIVVRDSGPGVAPELAREVFSHGF 494

Query: 77  TSK 79
           T+K
Sbjct: 495 TTK 497


>gi|295680603|ref|YP_003609177.1| histidine kinase [Burkholderia sp. CCGE1002]
 gi|295440498|gb|ADG19666.1| histidine kinase [Burkholderia sp. CCGE1002]
          Length = 441

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           A++ L+EN+L    A  + V+  +         ++TDNG G+    +     R 
Sbjct: 336 AVRNLLENALRYTPAGGT-VDIDLFRSADDLVVRVTDNGPGIPEASLDRVFDRF 388


>gi|269965511|ref|ZP_06179629.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           alginolyticus 40B]
 gi|269829874|gb|EEZ84105.1| putative C4-dicarboxylate transport sensor protein [Vibrio
           alginolyticus 40B]
          Length = 690

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 21  ERPSIAIKELIENSLDA--ESSRVETV-IAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+LDA   ++  +   I     +  +  ++DNG G++ E +    +  
Sbjct: 580 QRLLQVLGNLVSNALDAMNNTTNPQLNLIVNPTVNQVELIVSDNGCGVSDEMLESMFEPF 639

Query: 76  CTS-KISDDF 84
            TS KI +  
Sbjct: 640 QTSKKIGEGL 649


>gi|260775694|ref|ZP_05884590.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608110|gb|EEX34279.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 551

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 12/59 (20%)

Query: 29  ELIENSLDA---------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           EL+ N++ A            ++       G +    + DNG G+ + ++        T
Sbjct: 437 ELLRNAIQACELKPNPEEG--QISIAAQQDGQRWVIHVVDNGVGIEAADLKRVYDPFFT 493


>gi|255562314|ref|XP_002522164.1| DNA gyrase subunit B, putative [Ricinus communis]
 gi|223538602|gb|EEF40205.1| DNA gyrase subunit B, putative [Ricinus communis]
          Length = 732

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 32/191 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++N++D   A  +SRV+ ++     +   I+DNG G+   ++    ++        
Sbjct: 125 VYEILDNAIDEAQAGYASRVDVILHSD--NSVSISDNGRGI-PTDLHPVTKKSALETVLT 181

Query: 75  --HCTSKI--SDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKIS 129
             H   K   S+   ++ + G  G  L  + A+S  L +           + +       
Sbjct: 182 VLHAGGKFGGSNSGYSV-SGGLHGVGLSVVNALSEGLEVTVWRDGMEYRQRYSRGNPVTI 240

Query: 130 SVRPVAM-----NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
            +            GT V         P +  F  + + + N I   +R +A   PK++ 
Sbjct: 241 LMCHSLAVESRDRQGTCVRF------WPDKEVFTTAIEFDYNTIAGRVRELAFLNPKLTI 294

Query: 185 TFSTIKSNRYK 195
           T     ++  K
Sbjct: 295 TLKKEDNDPEK 305


>gi|108946666|gb|ABG23681.1| gyrase subunit B [Leptospira santarosai]
 gi|108946668|gb|ABG23682.1| gyrase subunit B [Leptospira santarosai]
 gi|108946670|gb|ABG23683.1| gyrase subunit B [Leptospira santarosai]
 gi|108946672|gb|ABG23684.1| gyrase subunit B [Leptospira santarosai]
          Length = 137

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 27 VYEVVDNSVDEAMAGHCTEIKISILPDNI--IEVKDNGRGIPVD 68


>gi|60459488|gb|AAX20080.1| DNA gyrase subunit B [Leptospira santarosai serovar Alexi]
          Length = 143

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 30 VYEVVDNSVDEAMAGHCTEIKISILPDNI--IEVKDNGRGIPVD 71


>gi|89098586|ref|ZP_01171469.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus sp. NRRL B-14911]
 gi|89086831|gb|EAR65949.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus sp. NRRL B-14911]
          Length = 469

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 23/83 (27%)

Query: 22  RPSIAIKEL----IENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
            P+  +K+L    I+N+LDA     SS + TV A G      I D+G G+ +E +    +
Sbjct: 363 DPNS-LKQLFINIIQNALDAIEEKGSSIISTVKADGELCAI-IKDSGCGIPAERLANLGE 420

Query: 74  RHC------------TS-KISDD 83
                          TS KI+DD
Sbjct: 421 PFYSTKEKGTGLGLMTSYKIADD 443


>gi|150016918|ref|YP_001309172.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903383|gb|ABR34216.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 333

 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
           R+          +  +I DNG G+  E++P   +R  
Sbjct: 248 RISIFFDENPLFTEIKILDNGSGIEKEDLPYIFKRFY 284


>gi|296103585|ref|YP_003613731.1| sensory histidine kinase DcuS [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058044|gb|ADF62782.1| sensory histidine kinase DcuS [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 538

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 8   EKIINQIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIA-GGGKSFFQITDNG 60
               N+    E +      +  LIEN+LDA          +  ++    G    +++D+G
Sbjct: 419 PDTANE----EQVAVLVTVLGNLIENALDAMEGQPEG--EITLLLHYQNGWLSCEVSDDG 472

Query: 61  FGMTSEEIPMAVQRHCTSK 79
            G+   ++     +  ++K
Sbjct: 473 PGIDPAQLETIFTKGFSTK 491


>gi|296808183|ref|XP_002844430.1| ankyrin repeat protein [Arthroderma otae CBS 113480]
 gi|238843913|gb|EEQ33575.1| ankyrin repeat protein [Arthroderma otae CBS 113480]
          Length = 299

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 36/152 (23%), Gaps = 3/152 (1%)

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
           TL S+   + +  +            P   +  TI      ++ + +             
Sbjct: 123 TLTSKTAGSLSDGKCRSMWLGNYYGLPPHASSETITAFVRFWYNVSSSRKRKAYRTSTCT 182

Query: 167 LITDVIRRMAIAYPKVSF---TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVE 223
              +  R   + +             +  R  +     +G +P     V  ++F      
Sbjct: 183 STFEPDRHSPLTFSHQDLAPRNIIVDEKFRLWLLDWDQSGWYPIYFEYVCMQNFSVPLSW 242

Query: 224 LNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
                    +  +  +  F+           N
Sbjct: 243 GLVAKVRWWIFCWVSVGIFSMEQKVLHQALSN 274


>gi|242278025|ref|YP_002990154.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120919|gb|ACS78615.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 466

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           F ++ DNG G+  + +    +   TSK
Sbjct: 388 FIEVEDNGPGIPQDRLKKVFEPFYTSK 414


>gi|170690184|ref|ZP_02881351.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
 gi|170144619|gb|EDT12780.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
          Length = 474

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 29  ELIENSLDAES-------SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           EL+ N +D  +       S +   +A   G+   Q+ DNG G+ + E     +R   S
Sbjct: 367 ELVGNLID-NAIRYSGDGSVITVRVACEHGEPLLQVIDNGPGIAASERDAVFERFYRS 423


>gi|152994047|ref|YP_001338882.1| DNA gyrase subunit B [Marinomonas sp. MWYL1]
 gi|150834971|gb|ABR68947.1| DNA gyrase, B subunit [Marinomonas sp. MWYL1]
          Length = 807

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +  +I         ++DNG G+  +
Sbjct: 43 EVVDNSIDEALAGHCDTITVLIHPD--ESISVSDNGRGIPVD 82


>gi|54307668|ref|YP_128688.1| DNA topoisomerase IV subunit B [Photobacterium profundum SS9]
 gi|46912091|emb|CAG18886.1| putative topoisomerase IV, subunit B [Photobacterium profundum SS9]
          Length = 627

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 23/181 (12%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  + +VE ++        ++ D+G GM  +          E
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHARKVEVILYAD--QSLEVIDDGRGMPVDIHPVEGVSGVE 89

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
           + +  + H   K S+D     + G  G  +  + A+S  + +  +        QIA    
Sbjct: 90  LIL-CKLHAGGKFSNDSYQ-FSGGLHGVGISVVNALSKRVEVSVKRDGQI--YQIAFEHG 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
              S   V    G   +   + F  P    +  + +     +  V++  A+  P +   F
Sbjct: 146 DKVSELEVIGTCGRRAKGTRVHF-WPDAR-YFDNAKFSVTRLKSVLKAKAVLCPGLEIVF 203

Query: 187 S 187
           +
Sbjct: 204 T 204


>gi|325275174|ref|ZP_08141141.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas sp. TJI-51]
 gi|324099661|gb|EGB97540.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas sp. TJI-51]
          Length = 634

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA +++ +  +       G K   Q+ DNG G+ +E      +  
Sbjct: 518 TRLEQILVNLIGNALDAMAAQPQPELWLEGEVQGDKYRLQVRDNGHGIDAEARKHLFEPF 577

Query: 76  CTSK 79
            T+K
Sbjct: 578 FTTK 581


>gi|310640177|ref|YP_003944935.1| sensor with hamp domain [Paenibacillus polymyxa SC2]
 gi|309245127|gb|ADO54694.1| Putative sensor with HAMP domain [Paenibacillus polymyxa SC2]
          Length = 599

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 30  LIENS----LD--AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMA 71
           L+EN+    LD  A + R+   +    +     ++DNG GM  +++   
Sbjct: 487 LLENAFQHGLDRKAGAWRMAIRVEIMKEEVCITVSDNGNGMPPDKLEKV 535


>gi|258647794|ref|ZP_05735263.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259]
 gi|260852245|gb|EEX72114.1| DNA gyrase, B subunit [Prevotella tannerae ATCC 51259]
          Length = 653

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E ++NS+D   A   + +E  I     +   + DNG G+  +
Sbjct: 45 VYETVDNSIDEALAGYCTHIEVTICTD--NSIIVQDNGRGIPVD 86


>gi|256846674|ref|ZP_05552130.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784381|ref|ZP_06749672.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27]
 gi|256717894|gb|EEU31451.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487953|gb|EFG35308.1| DNA gyrase, B subunit [Fusobacterium sp. 3_1_27]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    ++E  I        ++ DNG G+ ++
Sbjct: 43 EIVDNSVDEALAGYCDKIEVKILPDNI--IEVIDNGRGIPTD 82


>gi|148546351|ref|YP_001266453.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
 gi|148510409|gb|ABQ77269.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 634

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA +++ +  +       G K   Q+ DNG G+ +E      +  
Sbjct: 518 TRLEQILVNLIGNALDAMAAQPQPELWLEGELQGDKYRLQVRDNGHGIDAEARKHLFEPF 577

Query: 76  CTSK 79
            T+K
Sbjct: 578 FTTK 581


>gi|319900695|ref|YP_004160423.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides helcogenes P 36-108]
 gi|319415726|gb|ADV42837.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Bacteroides helcogenes P 36-108]
          Length = 625

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 23/95 (24%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 22  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVTIE 80

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
                   + D G G+   ++  AV     SK++ 
Sbjct: 81  EN--LRVSVRDYGRGIPQGKLIEAV-----SKLNT 108


>gi|313232596|emb|CBY19266.1| unnamed protein product [Oikopleura dioica]
          Length = 806

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 23/79 (29%)

Query: 21 ERPSIAIKELIENSLDAESSRVETVIAG-------GGKSFFQITDNGFGMTSEEIPMAVQ 73
          E    AI E+++N+ D+ S +++  +          GKS+    D G GM          
Sbjct: 22 ESVFGAIAEIVDNAYDSGSPKLDIELKSVDEHENLQGKSYISFRDVGCGM---------- 71

Query: 74 RHCTSKISDDFSNIHTFGF 92
             TSK   +  N+  +GF
Sbjct: 72 ---TSK---EMFNVIAYGF 84


>gi|312602688|ref|YP_004022533.1| C4-dicarboxylate transport sensor protein dctB [Burkholderia
           rhizoxinica HKI 454]
 gi|312170002|emb|CBW77014.1| C4-dicarboxylate transport sensor protein dctB (EC 2.7.3.-)
           [Burkholderia rhizoxinica HKI 454]
          Length = 629

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESS----RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+ DA +S    R+   +          + DNG G+ ++ +P   +   T+K
Sbjct: 515 LIGNAADALASHPTARIIIEVDTRPDVVAIAVIDNGPGIAADLLPRLFEPFFTTK 569


>gi|296282155|ref|ZP_06860153.1| sensor histidine kinase [Citromicrobium bathyomarinum JL354]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 18/86 (20%)

Query: 12  NQIAAGEIIERPSIAIKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPM 70
           ++I A   +     A++ LIEN+L    +  +  +   GG +   + D G G+  E++  
Sbjct: 366 DRIVAPVQVTWLRRALRNLIENALRYGGTA-QVSLTREGGTAVIAVEDEGPGIPPEDVAA 424

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEA 96
            ++                   RGEA
Sbjct: 425 MLEPF----------------RRGEA 434


>gi|55378133|ref|YP_135983.1| signal-transducing histidine kinase-like protein [Haloarcula
           marismortui ATCC 43049]
 gi|55230858|gb|AAV46277.1| signal-transducing histidine kinase-like [Haloarcula marismortui
           ATCC 43049]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 11/49 (22%)

Query: 29  ELIENSLDAESSR--------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           EL+EN++   +          +       G++  ++ D+G G+   E  
Sbjct: 310 ELVENAI---AHNDQPSPTVEIRVRTQDTGRTLVEVVDDGPGLPEHEAR 355


>gi|88854504|ref|ZP_01129171.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1]
 gi|88816312|gb|EAR26167.1| DNA topoisomerase IV subunit B [marine actinobacterium PHSC20C1]
          Length = 664

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     +   I   G    ++ DNG G+  +
Sbjct: 59  VYEVVDNSVDEALAGYCDTINVWIRKDG--SVRVRDNGRGIPVD 100


>gi|88859081|ref|ZP_01133722.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2]
 gi|88819307|gb|EAR29121.1| DNA topoisomerase IV, subunit B [Pseudoalteromonas tunicata D2]
          Length = 629

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 77/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +S+++ ++     +  ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHASKIDVILHED--NSLEVQDDGRGMPVDIHPEEGIPGV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + + H   K S+      + G  G  +  + A+S  + +  +          +    
Sbjct: 89  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVSVKRDGQQYQIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            E +S    V   N GT V          A  ++  S     + +T +++  A+  P + 
Sbjct: 148 VEDLSITGTVGKRNTGTSVRFW-------ADSSYFDSPNYSISKLTYLLKAKAVLCPGLR 200

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
             F  I                 + + +
Sbjct: 201 IRF--INKQTKDTQEWFYEAGLKDYLKE 226


>gi|315940109|gb|ADU56233.1| DNA gyrase subunit B [Nocardia jejuensis]
          Length = 576

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++RV+  + A GG    ++ D+G G+ 
Sbjct: 17 EVVDNSVDEAMAGYATRVDVTLLADGG---VEVVDDGRGIP 54


>gi|270158399|ref|ZP_06187056.1| DNA gyrase B subunit [Legionella longbeachae D-4968]
 gi|289163357|ref|YP_003453495.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           longbeachae NSW150]
 gi|269990424|gb|EEZ96678.1| DNA gyrase B subunit [Legionella longbeachae D-4968]
 gi|288856530|emb|CBJ10325.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
           longbeachae NSW150]
          Length = 805

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 72/272 (26%), Gaps = 45/272 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I         + D+G G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGYCKEIFVTIHSD--ESITVKDDGRGIPVDIHKEEGRSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS---- 130
              K  D+   + + G  G  +  + A+S  L L  R        +              
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELHLTVRRHGKIHEQRYRNGVPDAPMAETG 160

Query: 131 ------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT---DVIRRMAIAYPK 181
                  +             +  + I A+     S       I    +  +R    + +
Sbjct: 161 DATTTGTQIWFKPSADTFSNIEFHYDILAKRLRELSYLNSGVCIHLFDERSQRQDTFHYE 220

Query: 182 ---VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
               +F     K+    M    +     E I   +   + ++  E               
Sbjct: 221 GGIKAFVEHLNKNKNVIMPIVFSMTAEKENIVVELSMQWNDSYQETLYCFTN-------- 272

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
               N    +        R    + + + I +
Sbjct: 273 ----NIPQRDGGTHMAGFRAALTRTLNNYIES 300


>gi|253464956|gb|ACT31596.1| two component sensor histidine kinase protein [Rhizobium tropici
           CIAT 899]
          Length = 174

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFF--QITDNGFGMTSE 66
           R    I  L++N++DA +      V  ++   GK      + DNG G+   
Sbjct: 96  RLEQVIVNLLQNAIDAVAGIEDPHVALLVDAAGKDMVKLTVADNGPGIDPA 146


>gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 30  LIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L  + +    R++  I   G      ++DNG G+   ++P   +R  
Sbjct: 302 LLDNAL--KYTPPGSRIDIAIRPKGSEIEICVSDNGPGIPVADLPHIFERFY 351


>gi|254411284|ref|ZP_05025061.1| Hsp90 protein, putative [Microcoleus chthonoplastes PCC 7420]
 gi|196181785|gb|EDX76772.1| Hsp90 protein, putative [Microcoleus chthonoplastes PCC 7420]
          Length = 660

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 46/185 (24%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     +   +    ++   ++DNG GMT+EE+ 
Sbjct: 32  LRELVSNAVDAIQKLKMVSYSGEVDGDVGEPEITISLDKNNQTL-SVSDNGIGMTAEEVK 90

Query: 70  MAVQRHCTS-------KISDDFSN--IHT--FGFRGEALPSIGAVSH-LTL--MSRPPQN 115
             + +   S       K   D     I     GF      S   V+  + +  +S     
Sbjct: 91  KYINQVAFSSAEEFIQKYQKDADQQIIGHFGLGF-----YSCFMVAKNVEIDTLSYQAGA 145

Query: 116 NTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
                      +           GT + +          L   ++E VE   I  ++++ 
Sbjct: 146 EAVHWSCDGSPQFELSESSRKERGTTITLT---------LQDEETEYVEPARIRQLVKKY 196

Query: 176 AIAYP 180
               P
Sbjct: 197 CDFMP 201


>gi|167746702|ref|ZP_02418829.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662]
 gi|167653662|gb|EDR97791.1| hypothetical protein ANACAC_01413 [Anaerostipes caccae DSM 14662]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   +   G +  +  DNG G+ 
Sbjct: 42 EIVDNSVDEFLAGHCDEITVTLKDDGTAVIE--DNGRGIP 79


>gi|160915756|ref|ZP_02077964.1| hypothetical protein EUBDOL_01771 [Eubacterium dolichum DSM 3991]
 gi|158432232|gb|EDP10521.1| hypothetical protein EUBDOL_01771 [Eubacterium dolichum DSM 3991]
          Length = 648

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 86/282 (30%), Gaps = 49/282 (17%)

Query: 30  LIEN--SLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           L EN  ++D  + ++   I    ++   I+DNG GM  EE+             ++   I
Sbjct: 51  LSENDSAVDRSAFKIHLDIDKENRALV-ISDNGIGMDKEELE------------ENLGTI 97

Query: 88  H---TFGFR-G--------EALPSIGA-----------VSHLTLMSRPPQNNTGAQIAIS 124
               +  F+ G        EA+  IG             S + ++++   ++T  + +  
Sbjct: 98  AKSGSLAFKEGLSEEEKKDEAVDIIGQFGVGFYSAFMVASRVEVLTKKYGSDTAYEWSSD 157

Query: 125 GEKISSVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
                ++     +  GT + +           +    +  +  L    I R+   Y    
Sbjct: 158 AVDGYTIEEAQKDSCGTTITLY--------LKDNTDDDNYDEYLQQYEIERLVKKYSDY- 208

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFN 243
             F        +           E+ ++   E  +      +        +       +N
Sbjct: 209 IRFPIEMMMETQKRVDEETAEGEEKPAEPKYETVLELKTLNSMIPLWKRNKSEITKEEYN 268

Query: 244 RGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVV 285
               ++F  F   + V    +   +  +    IP G+ P   
Sbjct: 269 EFYQDKFNDFHEPQRVIHTSVEGAVSFSTLMFIP-GKAPYNY 309


>gi|125569849|gb|EAZ11364.1| hypothetical protein OsJ_01229 [Oryza sativa Japonica Group]
          Length = 753

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++V+ ++   G +   +TDNG G+ ++
Sbjct: 147 VYEILDNAVDEAQAGYATKVDVILH--GDNSVSVTDNGRGIPTD 188


>gi|121730249|ref|ZP_01682630.1| na(+)-translocating NADH-quinone reductase subunit a
           (na(+)-translocating nqr subunit a) (na(+)-nqr subunit
           a) [Vibrio cholerae V52]
 gi|121627999|gb|EAX60554.1| na(+)-translocating NADH-quinone reductase subunit a
           (na(+)-translocating nqr subunit a) (na(+)-nqr subunit
           a) [Vibrio cholerae V52]
          Length = 366

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 72/209 (34%), Gaps = 31/209 (14%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S+++ ++        ++ D+G GM  +          
Sbjct: 6   TRPNHLGQEVIDNSVDEALAGYASKIQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGV 63

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAI 123
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R          +   
Sbjct: 64  ELIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVAVRRDGQVYEIAFEHGD 121

Query: 124 SGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
              +++        N GT V              +  S     + + + +R  A+  P +
Sbjct: 122 KVTELTVTGTCGRRNTGTSVHFW-------PDTKYFDSPNFSVSRLINNLRAKAVLCPGL 174

Query: 183 S--FTFSTIKSNRYKMNFQSTNGNFPERI 209
              FT     +    +          E +
Sbjct: 175 EIIFTDKVNNNEYRWLYEDGLKDYLAEGV 203


>gi|154173641|ref|YP_001407572.1| PAS/PAC sensor signal transduction histidine kinase [Campylobacter
           curvus 525.92]
 gi|112803796|gb|EAU01140.1| PAS/PAC sensor signal transduction histidine kinase [Campylobacter
           curvus 525.92]
          Length = 409

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA------ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               +  L+ N+ DA      +  R++  +    G    ++ DNG G+  +      + +
Sbjct: 299 LEQVVINLLNNARDALNERNVKDKRIDIRVYKEAGLGVLKVHDNGGGIEGDVKDKIFEPY 358

Query: 76  CTSK 79
            T+K
Sbjct: 359 FTTK 362


>gi|115435866|ref|NP_001042691.1| Os01g0268300 [Oryza sativa Japonica Group]
 gi|75285839|sp|Q5NBJ3|GYRB_ORYSJ RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|56783730|dbj|BAD81142.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
 gi|56783751|dbj|BAD81163.1| putative DNA gyrase B subunit [Oryza sativa Japonica Group]
 gi|113532222|dbj|BAF04605.1| Os01g0268300 [Oryza sativa Japonica Group]
          Length = 729

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 28/44 (63%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++V+ ++   G +   +TDNG G+ ++
Sbjct: 123 VYEILDNAVDEAQAGYATKVDVILH--GDNSVSVTDNGRGIPTD 164


>gi|320352198|ref|YP_004193537.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320120700|gb|ADW16246.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 799

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++NSL     R+   I  G     +++D G G+  E++    +   TSK
Sbjct: 567 VDNSL-----RLYEKIGQGEYVVLEVSDQGSGIRPEDLDKIFEPFYTSK 610


>gi|319783876|ref|YP_004143352.1| DNA topoisomerase IV, subunit beta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169764|gb|ADV13302.1| DNA topoisomerase IV, B subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  ++  G  +  +TDNG G+  +
Sbjct: 82  EVIDNSMDEAVAGHATFIDVELSADG--YLAVTDNGRGIPID 121


>gi|301312324|ref|ZP_07218241.1| sensory transduction histidine kinase [Bacteroides sp. 20_3]
 gi|300829746|gb|EFK60399.1| sensory transduction histidine kinase [Bacteroides sp. 20_3]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 24  SIAIKELIENSLDAESS------RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +  +  LIEN++            ++ V+     G     ++DNGFG+  +E     ++ 
Sbjct: 364 ANVLSNLIENAI----KYSGEEVNIDIVVLWNQQGVEL-TVSDNGFGIAPDERRKVFEKF 418

Query: 76  CTS 78
             S
Sbjct: 419 YRS 421


>gi|298377801|ref|ZP_06987751.1| sensory transduction histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265247|gb|EFI06910.1| sensory transduction histidine kinase [Bacteroides sp. 3_1_19]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 24  SIAIKELIENSLDAESS------RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +  +  LIEN++            ++ V+     G     ++DNGFG+  +E     ++ 
Sbjct: 364 ANVLSNLIENAI----KYSGEEVNIDIVVLWNQQGVEL-TVSDNGFGIAPDERRKVFEKF 418

Query: 76  CTS 78
             S
Sbjct: 419 YRS 421


>gi|256842420|ref|ZP_05547923.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736027|gb|EEU49358.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 471

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 24  SIAIKELIENSLDAESS------RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +  +  LIEN++            ++ V+     G     ++DNGFG+  +E     ++ 
Sbjct: 364 ANVLSNLIENAI----KYSGEEVNIDIVVLWNQQGVEL-TVSDNGFGIAPDERRKVFEKF 418

Query: 76  CTS 78
             S
Sbjct: 419 YRS 421


>gi|188993905|ref|YP_001928157.1| heat shock protein 90 [Porphyromonas gingivalis ATCC 33277]
 gi|229890296|sp|B2RGR5|HTPG_PORG3 RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|188593585|dbj|BAG32560.1| heat shock protein 90 [Porphyromonas gingivalis ATCC 33277]
          Length = 684

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 46/256 (17%)

Query: 27  IKELIENSLDA--------------ESS---RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++E++ N++DA                +   RV   +    ++   ++D G GMT EE+ 
Sbjct: 30  LREIVSNAVDATQKLKTLTSVGEFKGETGDLRVTVSVDEVART-ITVSDRGVGMTEEEVE 88

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  DD + I      GF      S   VS  + +++R   ++ T
Sbjct: 89  KYINQIAFSSAEEFLEKYKDDKAAIIGHFGLGF-----YSAFMVSERVDVITRSFREDAT 143

Query: 118 GAQIAISGEKISSVRPVA-MNPGTIVEVRDLFFT---IPARLNFLKSEQVETNLITDVIR 173
             + +  G    ++ P    + GT + +         +          +    L   +I 
Sbjct: 144 AVKWSCDGSPEYTLEPADKADRGTDIVMHIDEENSEFLKKEKIEGLLGKYCKFLTVPIIF 203

Query: 174 RMAIAYPKVSFTFSTIKSN-------RYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
                +       +   +          K      + ++ E    +              
Sbjct: 204 GKKQEWKDGKMQDTDEDNQINDTHPAWTKKPADLKDEDYKEFYRSLYPMSEEPLFWIHLN 263

Query: 227 KSNEITLQGYTGIPTF 242
                 L G    P  
Sbjct: 264 VDYPFNLTGILYFPKI 279


>gi|187778178|ref|ZP_02994651.1| hypothetical protein CLOSPO_01770 [Clostridium sporogenes ATCC
           15579]
 gi|187775106|gb|EDU38908.1| hypothetical protein CLOSPO_01770 [Clostridium sporogenes ATCC
           15579]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGEDKIFIKVEDNGEGIPKEDLPHIFERFYRS 419


>gi|73670270|ref|YP_306285.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|72397432|gb|AAZ71705.1| DNA gyrase subunit B [Methanosarcina barkeri str. Fusaro]
          Length = 633

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I   G     + DNG G+  +
Sbjct: 41 VYEVVDNSIDEALAGFCTIINVTINPDG--SVTVLDNGRGIPVD 82


>gi|34539918|ref|NP_904397.1| heat shock protein 90 [Porphyromonas gingivalis W83]
 gi|229890297|sp|P0C938|HTPG_PORGI RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|5762476|gb|AAD51118.1|AF176245_1 high temperature protein HtpG [Porphyromonas gingivalis ATCC 33277]
 gi|34396229|gb|AAQ65296.1| heat shock protein HtpG [Porphyromonas gingivalis W83]
          Length = 684

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 46/256 (17%)

Query: 27  IKELIENSLDA--------------ESS---RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++E++ N++DA                +   RV   +    ++   ++D G GMT EE+ 
Sbjct: 30  LREIVSNAVDATQKLKTLTSVGEFKGETGDLRVTVSVDEVART-ITVSDRGVGMTEEEVE 88

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  DD + I      GF      S   VS  + +++R   ++ T
Sbjct: 89  KYINQIAFSSAEEFLEKYKDDKAAIIGHFGLGF-----YSAFMVSERVDVITRSFREDAT 143

Query: 118 GAQIAISGEKISSVRPVA-MNPGTIVEVRDLFFT---IPARLNFLKSEQVETNLITDVIR 173
             + +  G    ++ P    + GT + +         +          +    L   +I 
Sbjct: 144 AVKWSCDGSPEYTLEPADKADRGTDIVMHIDEENSEFLKKEKIEGLLGKYCKFLTVPIIF 203

Query: 174 RMAIAYPKVSFTFSTIKSN-------RYKMNFQSTNGNFPERISQVIGEDFINNAVELNE 226
                +       +   +          K      + ++ E    +              
Sbjct: 204 GKKQEWKDGKMQDTDEDNQINDTHPAWTKKPADLKDEDYKEFYRSLYPMSEEPLFWIHLN 263

Query: 227 KSNEITLQGYTGIPTF 242
                 L G    P  
Sbjct: 264 VDYPFNLTGILYFPKI 279


>gi|134288296|ref|YP_001110459.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
 gi|134132946|gb|ABO59656.1| DNA topoisomerase IV subunit B [Burkholderia vietnamiensis G4]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 23/209 (11%)

Query: 21  ERPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGM-----TSEEIPMA 71
           E P   I+E+++N+ D A    +SR++ ++     +   + DNG G+      +++IP+ 
Sbjct: 33  ENPMHIIQEVLDNAADEAQNGHASRIDVIVHRD--NSVTVADNGRGIPVGLHPTKQIPVV 90

Query: 72  VQR----HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
           V      H  +K     S   + G  G  +    A+S  + +  +               
Sbjct: 91  VLAYTKLHAGAKFRKGNSYQRSGGLHGVGVAVTNALSTKVEVEVKREGKVHRVHFLDGDR 150

Query: 127 KISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
           +IS V  V    P T       +        +  S Q+      +++R  A+  P V+  
Sbjct: 151 EISDVELVGDCGPRTTGTRVRAWPNP----KYFASPQIPLAKFEELLRSKAMLMPGVTVN 206

Query: 186 FSTI--KSNRYKMNFQSTNGNFPERISQV 212
           +        R             ERI+ +
Sbjct: 207 YRNDETGDERSWCYKDGIGDYLSERIADL 235


>gi|332881141|ref|ZP_08448801.1| Hsp90 protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680890|gb|EGJ53827.1| Hsp90 protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 624

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 87/285 (30%), Gaps = 50/285 (17%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA           E+        +E  +    K+   I+D G GMT+EE+ 
Sbjct: 28  LRELISNATDATLKLKHLTSIGEAKVEYGNPIIEVKVDKDNKTL-HISDQGIGMTAEEVE 86

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQI 121
             + +   S       K  D   +    G  G    S   V+  + ++++   +    + 
Sbjct: 87  KYINQIAFSGAEEFLAKYKDTAKDSGVIGHFGLGFYSAFMVANEVEIITKSYTDAPAVRW 146

Query: 122 AISGEKISSVRPVAMNP--GTIVEVR------DLFFTIPARLNFLKSEQVETNLITDVIR 173
              G    ++    +    GT + +       +            K  +     I    +
Sbjct: 147 VCDGSPEFTLEETDLRSERGTEIILHLNDESLEFLEEYRIEQLLRKYNKFMPVPIKFGTK 206

Query: 174 RMAIAYP-----KVSFTFSTIKSN-------RYKMNFQSTNGNFPERISQVIGEDFINNA 221
           ++ +  P          + T  +          K     ++ ++ +   ++    F    
Sbjct: 207 QVPLPRPENAPDDYKTEYRTEDNIINNPTPAWTKQPADLSDEDYKQFYHELYPTQFEEPL 266

Query: 222 VELN-EKSNEITLQGYTGIPTFNRGN---ANQFYVFINGRTVQDK 262
             ++        L G    P  +       ++  ++ N   V D 
Sbjct: 267 FHIHLNVDYPFHLTGILYFPKLSNDMQLQKDRIQLYQNQVFVTDN 311


>gi|319407911|emb|CBI81565.1| DNA gyrase subunit B [Bartonella schoenbuchensis R1]
          Length = 809

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGHATLVNVTLHADG--SCSVRDNGRGIPTD 89


>gi|319406439|emb|CBI80079.1| DNA gyrase subunit B [Bartonella sp. 1-1C]
          Length = 809

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGYATLVNVTLHADG--SCSVRDNGRGIPTD 89


>gi|319403524|emb|CBI77105.1| DNA gyrase subunit B [Bartonella rochalimae ATCC BAA-1498]
          Length = 809

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGYATLVNVTLHADG--SCSVRDNGRGIPTD 89


>gi|319898232|ref|YP_004158325.1| DNA gyrase subunit B [Bartonella clarridgeiae 73]
 gi|319402196|emb|CBI75727.1| DNA gyrase subunit B [Bartonella clarridgeiae 73]
          Length = 809

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGYATLVNVTLHADG--SCSVRDNGRGIPTD 89


>gi|319791417|ref|YP_004153057.1| integral membrane sensor signal transduction histidine kinase
           [Variovorax paradoxus EPS]
 gi|315593880|gb|ADU34946.1| integral membrane sensor signal transduction histidine kinase
           [Variovorax paradoxus EPS]
          Length = 467

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 15  AAGE-IIERPSI---AIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIP 69
            AG  I+ RP+     +  LI+N+L   S  V   +  G G+    + DNG G+  +E+ 
Sbjct: 350 KAGTPIVGRPNAMRRIVMNLIDNALIFGSD-VRVRVQPGDGQLAIAVVDNGPGIPPDELD 408

Query: 70  MAVQRHC 76
             ++   
Sbjct: 409 AVLKPFY 415


>gi|297616219|ref|YP_003701378.1| DNA gyrase subunit beta [Syntrophothermus lipocalidus DSM 12680]
 gi|297144056|gb|ADI00813.1| DNA gyrase, B subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 636

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++ +I     S   +TDNG G+  +
Sbjct: 46 EIVDNSIDEAVAGYCDEIKVIILDD--STVTVTDNGRGIPVD 85


>gi|296112613|ref|YP_003626551.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
 gi|295920307|gb|ADG60658.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           RH4]
          Length = 567

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
               ++ L+ N+L  A+S+    +++ G   G++F  + D+G G++ E          
Sbjct: 433 LHRVVQNLVGNALRYAQST---IMLSAGVVKGEAFISVEDDGHGISEENREKVFIPFA 487


>gi|261414958|ref|YP_003248641.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371414|gb|ACX74159.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327568|gb|ADL26769.1| putative DNA topoisomerase IV, B subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 614

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 67/243 (27%), Gaps = 35/243 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           +KE+I+NS+D     A   ++E  I        ++ D G G+    +   +   C SKI+
Sbjct: 45  VKEIIDNSIDEFVMGAG-KKIEINIDDHAA---RVRDYGRGIP---LGKVID--CVSKIN 95

Query: 82  D----DFSNI-HTFGFRGEALPSIGAVS-HLTLMS-RPPQNNTGAQIAISGEKISSVRPV 134
                D      + G  G    ++ A+S    + S R  +            +       
Sbjct: 96  TGGKYDSEAFQKSVGLNGVGTKAVNALSTKFIVKSYRDGRMKQAEFSRGVLVQDYKECAT 155

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +             +  K+ +     + + +   A     +         T  
Sbjct: 156 NEKNGTEIYFE-------PDADIFKNYRFLPAYMEEKVWNYAYLNNGLQLVMNDKVYTSP 208

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           +    +  +  + +    +    G+D        N+                        
Sbjct: 209 NGLLDLLNKHVDDSIRYPVIHFKGKDIECAFTHGNQYGEHYYS---FVNGQHTTQGGTHQ 265

Query: 251 YVF 253
             F
Sbjct: 266 QAF 268


>gi|240849719|ref|YP_002971107.1| DNA gyrase subunit B [Bartonella grahamii as4aup]
 gi|240266842|gb|ACS50430.1| DNA gyrase subunit B [Bartonella grahamii as4aup]
          Length = 810

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 49 VYEVVDNAIDEALAGHATLVNVTLHADG--SCSVRDNGRGIPTD 90


>gi|163867345|ref|YP_001608539.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476]
 gi|161016986|emb|CAK00544.1| DNA gyrase subunit B [Bartonella tribocorum CIP 105476]
          Length = 816

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 55 VYEVVDNAIDEALAGHATLVNVTLHADG--SCSVRDNGRGIPTD 96


>gi|153007815|ref|YP_001369030.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151559703|gb|ABS13201.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 453

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           LIEN++     D  + R     A  GK    + DNG G+   E+P   +R 
Sbjct: 354 LIENAVNHSPRD-GAVRCRIE-AEAGKVRLTVEDNGPGIPDSEMPHVTERF 402


>gi|49474867|ref|YP_032908.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
 gi|49237672|emb|CAF26857.1| DNA gyrase subunit B [Bartonella henselae str. Houston-1]
          Length = 810

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 49 VYEVVDNAIDEALAGHATLVNVTLHADG--SCSVRDNGRGIPTD 90


>gi|326803543|ref|YP_004321361.1| DNA topoisomerase IV, B subunit [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650531|gb|AEA00714.1| DNA topoisomerase IV, B subunit [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 691

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   I     +   +TDNG GM 
Sbjct: 43 VYEIVDNSIDEALAGYCDEISVTIHED--NSVTVTDNGRGMP 82


>gi|325285408|ref|YP_004261198.1| Heat shock protein Hsp90 [Cellulophaga lytica DSM 7489]
 gi|324320862|gb|ADY28327.1| Heat shock protein Hsp90 [Cellulophaga lytica DSM 7489]
          Length = 629

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 26/123 (21%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA           E+        +E  +   GK    I D G GMT++E+ 
Sbjct: 29  LRELISNATDATLKLKHLTSIGEAKVEYGNPVIEIKVDKEGKK-IHIIDQGLGMTADEVE 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQI 121
             + +   S       K  D   +    G  G    S   V+  + ++++  ++   A  
Sbjct: 88  KYINQVAFSGAEEFLDKYKDSAKDSGIIGHFGLGFYSAFMVADKVEIITKSFKDEPAAHW 147

Query: 122 AIS 124
              
Sbjct: 148 TCD 150


>gi|310777811|ref|YP_003966144.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926]
 gi|309747134|gb|ADO81796.1| DNA gyrase subunit B [Ilyobacter polytropus DSM 2926]
          Length = 634

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   +++E  +        +++DNG G+ 
Sbjct: 40 EIVDNSVDESLAGYCNKIEIKVLKDNI--IEVSDNGRGIP 77


>gi|260459929|ref|ZP_05808182.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259034140|gb|EEW35398.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 633

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+LDA   R    +E  +     +    + DNG G+  E          
Sbjct: 523 RLEQILVNLLQNALDAMKDRPDPRIEIELAERDDRVLISVRDNGPGLGPEAAGNLFMPFQ 582

Query: 77  TSK 79
           T+K
Sbjct: 583 TTK 585


>gi|212223913|ref|YP_002307149.1| DNA topoisomerase VI subunit B [Thermococcus onnurineus NA1]
 gi|229558492|sp|B6YVS9|TOP6B_THEON RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|212008870|gb|ACJ16252.1| type II DNA topoisomerase VI, subunit B [Thermococcus onnurineus
          NA1]
          Length = 563

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTS 65
          I   +  + E + NSLDA  E+     V   I   G+      + DNG G+  
Sbjct: 33 IRSLTTVVHEAVTNSLDACEEAGILPYVRVEIEELGREHYKVIVEDNGPGIPE 85


>gi|311746794|ref|ZP_07720579.1| signal transduction histidine kinase [Algoriphagus sp. PR1]
 gi|126578474|gb|EAZ82638.1| signal transduction histidine kinase [Algoriphagus sp. PR1]
          Length = 481

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +I DNG G+  E +    +   TSK
Sbjct: 412 RVEIKDNGVGIPKENLERLFEPFFTSK 438


>gi|160878450|ref|YP_001557418.1| signal transduction histidine kinase, LytS [Clostridium
           phytofermentans ISDg]
 gi|160427116|gb|ABX40679.1| signal transduction histidine kinase, LytS [Clostridium
           phytofermentans ISDg]
          Length = 506

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 16/76 (21%)

Query: 30  LIENSL-----DAESS-RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           L+EN++      +  +  +    I  G      +TD+G GM   E+          K+SD
Sbjct: 403 LVENAIFHGVVPSGKNGTITINAIEDGNDLLITVTDDGIGMEPPELR---------KLSD 453

Query: 83  DFSNIHTFGFRGEALP 98
              +  + G  G  L 
Sbjct: 454 RMESTSSKGLTGIGLS 469


>gi|119026028|ref|YP_909873.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154488793|ref|ZP_02029642.1| hypothetical protein BIFADO_02100 [Bifidobacterium adolescentis
          L2-32]
 gi|118765612|dbj|BAF39791.1| DNA gyrase subunit B [Bifidobacterium adolescentis ATCC 15703]
 gi|154082930|gb|EDN81975.1| hypothetical protein BIFADO_02100 [Bifidobacterium adolescentis
          L2-32]
          Length = 774

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A + + +   +   G    ++ DNG G+  +
Sbjct: 42 EIIDNAVDEALAGACNHIIVTLHDDG--SVEVADNGRGIPVD 81


>gi|329962707|ref|ZP_08300630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328529541|gb|EGF56444.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 644

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 23/95 (24%)

Query: 3   IRKLSEKIINQIAAGEIIERPSI----------AIKELIENSLD-----AESSRVETVIA 47
           IR L +    ++ +G  I R              +KE+++NS+D     A   R+E  I 
Sbjct: 33  IRHLDDMEHIRVRSGMYIGRLGDGSQNDDGIYVLLKEVMDNSIDEFKMGAG-KRIEVTIE 91

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
                   + D G G+   ++  AV     SK++ 
Sbjct: 92  DS--LRVSVRDYGRGIPQGKLVEAV-----SKLNT 119


>gi|320355370|ref|YP_004196709.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032]
 gi|320123872|gb|ADW19418.1| DNA gyrase subunit B [Desulfobulbus propionicus DSM 2032]
          Length = 803

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          +E     I E+++NS+D   A    ++  VI     +   + DNG G+  +
Sbjct: 36 VEGLHHLIYEVVDNSIDEALAGHCDQISIVIHED--NAVTVEDNGRGIPVD 84


>gi|313159038|gb|EFR58413.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 392

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L++NSLDA      +   I+   K+    + D G G+         +   T+K
Sbjct: 290 VVENLMKNSLDALQGHGSINVHISSDDKNVMIDVKDTGKGIPKGNWKRIFEPGFTTK 346


>gi|206564291|ref|YP_002235054.1| two-component regulatory system sensor kinase protein [Burkholderia
           cenocepacia J2315]
 gi|198040331|emb|CAR56316.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
          Length = 440

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVRAAPDGGAVIAVLDRGPGIPDDQLDAVFEPF 387


>gi|56962689|ref|YP_174415.1| sensory histidine kinase DcuS [Bacillus clausii KSM-K16]
 gi|56908927|dbj|BAD63454.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 539

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 30  LIENSLDA------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LI+N +DA       S +V   +        +I DNG GM+  E+     R  ++K  D
Sbjct: 439 LIDNGIDAASGKENGSVKVTLYVLDEEL-IIRIADNGPGMSEVELEKMYVRGYSTKGKD 496


>gi|121889|sp|P21558|GYRB_HALSQ RecName: Full=DNA gyrase subunit B
 gi|99223|pir||A39135 DNA topoisomerase chain B homolog - Haloferax sp
 gi|149024|gb|AAB09605.1| DNA gyrase beta-subunit [Haloferax lucentense]
 gi|1899004|gb|AAB49900.1| DNA gyrase beta-subunit [Shuttle vector pMDS20]
          Length = 639

 Score = 43.1 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +E  +   G     +TDNG G+ 
Sbjct: 41 VYEVVDNSIDEALAGHCDAIEVALHEDG--SVSVTDNGRGIP 80


>gi|310818731|ref|YP_003951089.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391803|gb|ADO69262.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1579

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 22   RPSIAIKELIENSLDAES-SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  L+ N++   +  R+E V+     ++  ++ D G G+  E+     +R 
Sbjct: 1458 RLEQVVGNLLTNAMKYGAGKRIEVVLEGDSQQARLKVRDEGIGIAPEDAHRIFERF 1513


>gi|291547631|emb|CBL20739.1| DNA gyrase subunit B [Ruminococcus sp. SR1/5]
          Length = 641

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A   + +   I     +   +TDNG G+ 
Sbjct: 42 VYEIVDNAVDEALAGFCTEIHVDINPD--NSITVTDNGRGIP 81


>gi|282896629|ref|ZP_06304644.1| DNA gyrase, B subunit [Raphidiopsis brookii D9]
 gi|281198499|gb|EFA73385.1| DNA gyrase, B subunit [Raphidiopsis brookii D9]
          Length = 798

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V+  +   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSVDEALAGYCTHVDVELNADG--SCTVTDDGRGIPTD 80


>gi|282899715|ref|ZP_06307679.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505]
 gi|281195594|gb|EFA70527.1| DNA gyrase, B subunit [Cylindrospermopsis raciborskii CS-505]
          Length = 798

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + V+  +   G     +TD+G G+ ++
Sbjct: 39 VYEVVDNSVDEALAGYCTHVDVELNADG--SCTVTDDGRGIPTD 80


>gi|269793364|ref|YP_003312819.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542]
 gi|269095549|gb|ACZ19985.1| DNA gyrase subunit B [Sanguibacter keddieii DSM 10542]
          Length = 683

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  +   GG    ++ DNG G+  +
Sbjct: 58 VYEVVDNSVDEALAGYCDHIEVTLLDDGG---VRVVDNGRGIPVD 99


>gi|258515259|ref|YP_003191481.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778964|gb|ACV62858.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 473

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 33  NSLDAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHC 76
           NS  A ++ ++ V+   G+   +  + DNG G+   +     +R  
Sbjct: 381 NSQKASATVIKIVL-RVGEDNIEIDVEDNGKGIEEADREYIFERFY 425


>gi|242241013|ref|YP_002989194.1| DNA topoisomerase IV subunit B [Dickeya dadantii Ech703]
 gi|242133070|gb|ACS87372.1| DNA topoisomerase IV, B subunit [Dickeya dadantii Ech703]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 79/211 (37%), Gaps = 29/211 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRVEVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSRRVEVTVRRDGQVYDIAFEQGAK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + ++        N GT V             +F  S +   + +T +++  A+  P V 
Sbjct: 148 VQDLTITGTCGRRNTGTRVRFW-------PEESFFDSPRFSVSRLTHLLKAKAVLCPGVE 200

Query: 184 --FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
             F     ++ +        N    E ++ +
Sbjct: 201 ILFVDKVNETEQRWCYQDGLNDYLCEAVNGL 231


>gi|297563433|ref|YP_003682407.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847881|gb|ADH69901.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
               + EL+ N+L  +  +RV+   + G  +   + D+G G+  EE   A+ R   S
Sbjct: 355 LGSILDELVSNALRLSGGTRVQVRGSAGDPARISVLDDGEGLPEEERGAALDRFWRS 411


>gi|153938246|ref|YP_001390400.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152934142|gb|ABS39640.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295318487|gb|ADF98864.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGEDKIFIKVEDNGEGIPEEDLPHIFERFYRS 419


>gi|154483927|ref|ZP_02026375.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC
          27560]
 gi|149735418|gb|EDM51304.1| hypothetical protein EUBVEN_01633 [Eubacterium ventriosum ATCC
          27560]
          Length = 643

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     ++  I     +   + D+G G+ ++
Sbjct: 45 VYEIVDNAVDEALAGYCDTIDVQINED--NSITVRDDGRGIPTD 86


>gi|115377229|ref|ZP_01464440.1| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1]
 gi|115365755|gb|EAU64779.1| tetratricopeptide repeat family [Stigmatella aurantiaca DW4/3-1]
          Length = 1665

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 22   RPSIAIKELIENSLDAES-SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  L+ N++   +  R+E V+     ++  ++ D G G+  E+     +R 
Sbjct: 1544 RLEQVVGNLLTNAMKYGAGKRIEVVLEGDSQQARLKVRDEGIGIAPEDAHRIFERF 1599


>gi|24374743|ref|NP_718786.1| flagellar regulatory protein B [Shewanella oneidensis MR-1]
 gi|24349405|gb|AAN56230.1|AE015760_9 flagellar regulatory protein B [Shewanella oneidensis MR-1]
          Length = 360

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 23  PSIAIKELIENSLDAESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            S A+  L+ NSL+A +++++     I    +    + DNG G+ ++     ++   T+K
Sbjct: 249 LSSAVNNLVMNSLEAGATQIQLVANEIDD--QLHLNVVDNGKGLDAKMQQRVLEPFFTTK 306


>gi|85711018|ref|ZP_01042079.1| DNA gyrase subunit B [Idiomarina baltica OS145]
 gi|85695422|gb|EAQ33359.1| DNA gyrase subunit B [Idiomarina baltica OS145]
          Length = 806

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + V+  I   G     + D+G G+  +
Sbjct: 43 EVVDNSIDEALAGHCTGVDVRIHSDG--SVSVRDDGRGIPVD 82


>gi|85708477|ref|ZP_01039543.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Erythrobacter sp. NAP1]
 gi|85690011|gb|EAQ30014.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Erythrobacter sp. NAP1]
          Length = 712

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 13/85 (15%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM-AVQRH 75
           E    A+  +++N++DA    ++  +    + G     +I D+G GM+ E +     +  
Sbjct: 585 ESLEQALVHIVQNAVDASGPEDAVHISVS-SDGITGQIEIIDSGEGMSPEFVRTGLFKPF 643

Query: 76  CTSK-----IS--DDFSNIHTFGFR 93
            +SK     I   +    I + G R
Sbjct: 644 VSSKQGGFGIGALEAREMIKSMGGR 668


>gi|327401204|ref|YP_004342043.1| DNA gyrase subunit B [Archaeoglobus veneficus SNP6]
 gi|327316712|gb|AEA47328.1| DNA gyrase, B subunit [Archaeoglobus veneficus SNP6]
          Length = 621

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   +   G +   + D+G G+ +E
Sbjct: 39 EIVDNSIDEALAGHCKNITVTLHKDGSAS--VEDDGRGIPTE 78


>gi|328542380|ref|YP_004302489.1| two-component sensor histidine kinase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412127|gb|ADZ69190.1| Probable two-component sensor histidine kinase protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 601

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 22  RPSIAIKELIENSLDA--E----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ N++DA       +  ++  +A G      + DNG G+    +       
Sbjct: 488 RLEQVIMNLVANAIDAVRGREDPAIDLDVDVADGEVRL-SVADNGTGIPEVAMGQIFDPF 546

Query: 76  CTSK 79
            T+K
Sbjct: 547 FTTK 550


>gi|319782482|ref|YP_004141958.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
 gi|317168370|gb|ADV11908.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 993

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 18 EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E I     AI E+ +N+ DA +  V   I  G +    I+D+G GM   E  
Sbjct: 20 EQIADCPTAISEIWKNAFDAYAKNVALDIYDGNEPTAVISDDGHGMNRREFE 71


>gi|323343732|ref|ZP_08083959.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
 gi|323095551|gb|EFZ38125.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella oralis
           ATCC 33269]
          Length = 657

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 64/246 (26%), Gaps = 35/246 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  I         + D G G+   ++  AV    T  K 
Sbjct: 57  LKEVIDNSIDEFKMNAG-KRIEIDIEEN--LRVTVRDYGRGIPQGKLVEAVSVLNTGGKY 113

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S        + S               +K       
Sbjct: 114 DSKAFK-KSVGLNGVGVKAVNALSS-----RFEVKSFREGKVRDITFERGEKKTDKTSKS 167

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +                ++ Q   +++  ++R        ++          +
Sbjct: 168 TDETGTFIYFE-------PDDTLFQNYQFHDDIVETMLRNYTYLNSGLAIMYNGRRILSR 220

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           +    +   +   +    I  + GED        N+   E                    
Sbjct: 221 NGLEDLLNDNMTNDGLYPIIHIKGEDIEVAFTHTNQYGEEYHS---FVNGQHTTQGGTHQ 277

Query: 251 YVFING 256
             F   
Sbjct: 278 SAFKEH 283


>gi|312877900|ref|ZP_07737845.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795326|gb|EFR11710.1| DNA gyrase, B subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI     +   + D+G G+  +
Sbjct: 45 VYEIVDNAIDEAMAGFCKNIEVVIHKD--NSVTVIDDGRGIPVD 86


>gi|312792288|ref|YP_004025211.1| DNA gyrase subunit B [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179428|gb|ADQ39598.1| DNA gyrase, B subunit [Caldicellulosiruptor kristjanssonii
          177R1B]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI     +   + D+G G+  +
Sbjct: 45 VYEIVDNAIDEAMAGFCKNIEVVIHKD--NSVTVIDDGRGIPVD 86


>gi|312621133|ref|YP_004022746.1| DNA gyrase subunit B [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201600|gb|ADQ44927.1| DNA gyrase, B subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI     +   + D+G G+  +
Sbjct: 58 VYEIVDNAIDEAMAGFCKNIEVVIHKD--NSVTVIDDGRGIPVD 99


>gi|312126267|ref|YP_003991141.1| DNA gyrase subunit B [Caldicellulosiruptor hydrothermalis 108]
 gi|311776286|gb|ADQ05772.1| DNA gyrase, B subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 637

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI     +   + D+G G+  +
Sbjct: 45 VYEIVDNAIDEAMAGFCKNIEVVIHKD--NSVTVIDDGRGIPVD 86


>gi|311693220|gb|ADP96093.1| two-component sensor [marine bacterium HP15]
          Length = 987

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSLDA---ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +R       L+ N+ DA     + +     G G S   ++ D G G+  +++    +   
Sbjct: 864 QRLVQVFVNLLANARDASPEGGT-IRVSGKGDGYSAIIEVVDEGSGIPGDQLDHIFEPFY 922

Query: 77  TSK 79
           T+K
Sbjct: 923 TTK 925


>gi|310816655|ref|YP_003964619.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25]
 gi|308755390|gb|ADO43319.1| DNA topoisomerase IV, B subunit [Ketogulonicigenium vulgare Y25]
          Length = 654

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +         + DNG G+  +
Sbjct: 50 VAEILDNSMDEAVAGHANRIEVELHED--YSVTVRDNGRGIPVD 91


>gi|307129110|ref|YP_003881126.1| Topoisomerase IV subunit B [Dickeya dadantii 3937]
 gi|306526639|gb|ADM96569.1| Topoisomerase IV subunit B [Dickeya dadantii 3937]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 77/208 (37%), Gaps = 29/208 (13%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    +
Sbjct: 31  TRPNHLGQEVIDNSVDEALAGHARRIDVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
            + + R H   K S+      + G  G  +  + A+S  + +  R      +   +    
Sbjct: 89  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVRRDGQVYDIAFENGDK 147

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
            + ++        N GT V             +F  S +     +T +++  A+  P V 
Sbjct: 148 VQDLTVTGTCGRRNTGTRVHFW-------PDASFFDSPRFSVLSLTHLLKAKAVLCPGVE 200

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
             F    ++  +       G   + + +
Sbjct: 201 IVFKDGVNDTEQ--RWCYQGGLSDYLCE 226


>gi|304408466|ref|ZP_07390110.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304342551|gb|EFM08401.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 623

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A       ++   +   G S     +++D G G+  + +    +   T+K
Sbjct: 522 LLKNAIEAMPGDGHGQIRVSLQQAGHSDSIRIEVSDQGQGIAPDRLARLTEPFYTTK 578


>gi|253573849|ref|ZP_04851191.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846326|gb|EES74332.1| DNA gyrase, B subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 636

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +++++  +     +   + DNG G+ 
Sbjct: 44 EVVDNSIDEALAGYANKIDVTVHPD--NSVTVEDNGRGIP 81


>gi|289209261|ref|YP_003461327.1| DNA topoisomerase IV subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944892|gb|ADC72591.1| DNA topoisomerase IV, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 628

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D A    + R++ ++         ++D+G GM  +
Sbjct: 28 TRPNHLAQEVIDNSVDEAISGHAKRIDVILHKD--DSVSVSDDGRGMPVD 75


>gi|222528063|ref|YP_002571945.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454910|gb|ACM59172.1| DNA gyrase, B subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 650

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E VI     +   + D+G G+  +
Sbjct: 58 VYEIVDNAIDEAMAGFCKNIEVVIHKD--NSVTVIDDGRGIPVD 99


>gi|319646550|ref|ZP_08000779.1| hypothetical protein HMPREF1012_01816 [Bacillus sp. BT1B_CT2]
 gi|317391138|gb|EFV71936.1| hypothetical protein HMPREF1012_01816 [Bacillus sp. BT1B_CT2]
          Length = 531

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+ DA S +    +   ++ G      ++ D+G G+   E     Q+  ++K
Sbjct: 436 LIENAFDAVSHKKDRSILVFLSDGADHILIEVEDSGDGIPEGEQERIFQKFYSTK 490


>gi|316931400|ref|YP_004106382.1| DNA gyrase subunit B [Rhodopseudomonas palustris DX-1]
 gi|315599114|gb|ADU41649.1| DNA gyrase, B subunit [Rhodopseudomonas palustris DX-1]
          Length = 813

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +S VE ++   G     + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHASAVEVILNADG--SVTVRDDGRGIPVD 96


>gi|322420752|ref|YP_004199975.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127139|gb|ADW14699.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 672

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 30  LIENSLDA--ESSRVETV---IAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+  A     R++     +   G+       I DNG G+  + +        T+K
Sbjct: 562 LLQNAKSALPNGGRIDISTSLVKKYGEQLQVAVVIRDNGCGIPPQNLAKIFDPFFTTK 619


>gi|184199651|ref|YP_001853858.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
 gi|183579881|dbj|BAG28352.1| DNA gyrase subunit B [Kocuria rhizophila DC2201]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  +   GG    +++DNG G+  +
Sbjct: 45 VYEVVDNSVDEALAGYCDHIEVTLQADGG---VRVSDNGRGIPVD 86


>gi|46201436|ref|ZP_00055046.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 529

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 8/50 (16%)

Query: 30  LIENSL-----DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAV 72
           L+EN+L     DA + ++E        G     + DNG G+         
Sbjct: 422 LLENALIYRQPDA-APQIEITATQEPKGLWRVSVHDNGIGIEPAYFEKIF 470


>gi|327483574|gb|AEA77981.1| Sensor kinase CitA, DpiB [Vibrio cholerae LMA3894-4]
          Length = 536

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 415 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 472

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 473 KGVSSK 478


>gi|330811363|ref|YP_004355825.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379471|gb|AEA70821.1| Putative histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 634

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA  ++ E  +      G GK   ++ DNG G+  +      +  
Sbjct: 519 TRLEQILVNLIGNALDAMQTQPEPQLWLEGQAGDGKYRLRVRDNGHGIDPQARKHLFEPF 578

Query: 76  CTSK 79
            T+K
Sbjct: 579 FTTK 582


>gi|320107428|ref|YP_004183018.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925949|gb|ADV83024.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 448

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 16  AGEIIERPSIAIKELIENSLDAESS----RVETVIAGG----GKSFFQITDNGFGMTSEE 67
           AG I++     +  LIEN+++  SS    R+   +       G   F ITDNG G+ SE 
Sbjct: 333 AGAIVQ----VLSNLIENAVNYGSSANGARIVIAVDASRDTPGMMQFSITDNGPGIASEH 388

Query: 68  IPMAVQRHC 76
           +    +R  
Sbjct: 389 LERVFERFY 397


>gi|295979459|dbj|BAJ07402.1| DNA gyrase subunit B [alpha proteobacterium MBIC3818]
 gi|295979461|dbj|BAJ07403.1| DNA gyrase subunit B [alpha proteobacterium MBIC3819]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 12 VYEVVDNAIDEALAGHADHVTVTLNPDG--SVTVSDNGRGIPTD 53


>gi|288959105|ref|YP_003449446.1| hypothetical protein AZL_022640 [Azospirillum sp. B510]
 gi|288911413|dbj|BAI72902.1| hypothetical protein AZL_022640 [Azospirillum sp. B510]
          Length = 183

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 20  IERPSIAIKELIENSLDAESSRV--ETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           ++R    I  L+ N+  A+ + V     +     GG    ++TD+G G+ +EE  +  QR
Sbjct: 54  VDRVVQVIVNLLSNA--AKFTPVGGRVRLEAQRDGGVLRVRVTDSGPGVAAEERELVFQR 111

Query: 75  HCTS 78
              S
Sbjct: 112 FHRS 115


>gi|296124082|ref|YP_003631860.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016422|gb|ADG69661.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 483

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+LDA        + T IA G      I D+G G+         Q + T+K
Sbjct: 366 LILNALDATEEGGQIHISTSIADGWL-RIDIRDDGHGIEPAARSRIFQPYFTTK 418


>gi|229513071|ref|ZP_04402537.1| sensor kinase CitA [Vibrio cholerae TMA 21]
 gi|229349964|gb|EEO14918.1| sensor kinase CitA [Vibrio cholerae TMA 21]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|229530081|ref|ZP_04419471.1| sensor kinase CitA [Vibrio cholerae 12129(1)]
 gi|229333855|gb|EEN99341.1| sensor kinase CitA [Vibrio cholerae 12129(1)]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|254500251|ref|ZP_05112402.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11]
 gi|222436322|gb|EEE43001.1| DNA gyrase, B subunit [Labrenzia alexandrii DFL-11]
          Length = 820

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 59  VYEVVDNAIDEALAGHADHVTVTLNPDG--SVTVSDNGRGIPTD 100


>gi|218899824|ref|YP_002448235.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218544331|gb|ACK96725.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFY 429


>gi|197263385|ref|ZP_03163459.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197241640|gb|EDY24260.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 543

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I +  ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEVIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|298499077|ref|ZP_07008884.1| sensor kinase citA [Vibrio cholerae MAK 757]
 gi|297543410|gb|EFH79460.1| sensor kinase citA [Vibrio cholerae MAK 757]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|254285506|ref|ZP_04960470.1| sensor kinase citA [Vibrio cholerae AM-19226]
 gi|150424368|gb|EDN16305.1| sensor kinase citA [Vibrio cholerae AM-19226]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|297581191|ref|ZP_06943115.1| sensor kinase citA [Vibrio cholerae RC385]
 gi|297534507|gb|EFH73344.1| sensor kinase citA [Vibrio cholerae RC385]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|153828280|ref|ZP_01980947.1| sensor kinase citA [Vibrio cholerae 623-39]
 gi|148876234|gb|EDL74369.1| sensor kinase citA [Vibrio cholerae 623-39]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|147673181|ref|YP_001216274.1| sensor kinase citA [Vibrio cholerae O395]
 gi|146315064|gb|ABQ19603.1| sensor kinase citA [Vibrio cholerae O395]
 gi|227012615|gb|ACP08825.1| sensor kinase citA [Vibrio cholerae O395]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|153800569|ref|ZP_01955155.1| sensor kinase citA [Vibrio cholerae MZO-3]
 gi|124123858|gb|EAY42601.1| sensor kinase citA [Vibrio cholerae MZO-3]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|121726058|ref|ZP_01679357.1| sensor kinase citA [Vibrio cholerae V52]
 gi|121631540|gb|EAX63910.1| sensor kinase citA [Vibrio cholerae V52]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|118590457|ref|ZP_01547859.1| DNA gyrase subunit B [Stappia aggregata IAM 12614]
 gi|118436920|gb|EAV43559.1| DNA gyrase subunit B [Stappia aggregata IAM 12614]
          Length = 817

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 56 VYEVVDNAIDEALAGHADHVTVTLNPDG--SVTVSDNGRGIPTD 97


>gi|91780586|ref|YP_555793.1| histidine kinase [Burkholderia xenovorans LB400]
 gi|91693246|gb|ABE36443.1| histidine kinase [Burkholderia xenovorans LB400]
          Length = 288

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           R + AI  L+ N+  A+ +     +   +   GK     +TDNG G++   +P       
Sbjct: 170 RLAQAIDNLLHNA--AKYTPDHGCITVNVHSDGKDLIVSVTDNGLGISRALLPHIFDLFA 227

Query: 77  TS 78
            S
Sbjct: 228 QS 229


>gi|19909743|dbj|BAB87067.1| DNA gyrase subunit B [bacterium MBIC3367]
          Length = 461

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 7  VYEVVDNAIDEALAGHADHVTVTLNPDG--SVTVSDNGRGIPTD 48


>gi|255744595|ref|ZP_05418546.1| sensor kinase CitA [Vibrio cholera CIRS 101]
 gi|255737626|gb|EET93020.1| sensor kinase CitA [Vibrio cholera CIRS 101]
          Length = 536

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 415 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 472

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 473 KGVSSK 478


>gi|15640810|ref|NP_230440.1| sensor kinase citA [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585770|ref|ZP_01675565.1| sensor kinase citA [Vibrio cholerae 2740-80]
 gi|153817263|ref|ZP_01969930.1| sensor kinase citA [Vibrio cholerae NCTC 8457]
 gi|153821358|ref|ZP_01974025.1| sensor kinase citA [Vibrio cholerae B33]
 gi|227080970|ref|YP_002809521.1| sensor kinase citA [Vibrio cholerae M66-2]
 gi|229505594|ref|ZP_04395104.1| sensor kinase CitA [Vibrio cholerae BX 330286]
 gi|229510734|ref|ZP_04400213.1| sensor kinase CitA [Vibrio cholerae B33]
 gi|229517855|ref|ZP_04407299.1| sensor kinase CitA [Vibrio cholerae RC9]
 gi|229608612|ref|YP_002879260.1| sensor kinase CitA [Vibrio cholerae MJ-1236]
 gi|254847928|ref|ZP_05237278.1| sensor kinase citA [Vibrio cholerae MO10]
 gi|9655240|gb|AAF93956.1| sensor kinase citA [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550133|gb|EAX60149.1| sensor kinase citA [Vibrio cholerae 2740-80]
 gi|126512179|gb|EAZ74773.1| sensor kinase citA [Vibrio cholerae NCTC 8457]
 gi|126521068|gb|EAZ78291.1| sensor kinase citA [Vibrio cholerae B33]
 gi|227008858|gb|ACP05070.1| sensor kinase citA [Vibrio cholerae M66-2]
 gi|229344570|gb|EEO09544.1| sensor kinase CitA [Vibrio cholerae RC9]
 gi|229350699|gb|EEO15640.1| sensor kinase CitA [Vibrio cholerae B33]
 gi|229357817|gb|EEO22734.1| sensor kinase CitA [Vibrio cholerae BX 330286]
 gi|229371267|gb|ACQ61690.1| sensor kinase CitA [Vibrio cholerae MJ-1236]
 gi|254843633|gb|EET22047.1| sensor kinase citA [Vibrio cholerae MO10]
          Length = 565

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G     ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|47567155|ref|ZP_00237871.1| probable sensor kinase citA VC1605, putative [Bacillus cereus
           G9241]
 gi|47556211|gb|EAL14546.1| probable sensor kinase citA VC1605, putative [Bacillus cereus
           G9241]
          Length = 534

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAES----SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A +     +VE  I  G      + D G G+  EEI     +  ++K
Sbjct: 434 LIDNALEAVANCEKKQVEVEIQYGDTLIITVQDTGKGIQEEEIGALFTKGYSTK 487


>gi|328951449|ref|YP_004368784.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451773|gb|AEB12674.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 429

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 21  ERPSIAIKELIENSLDA-ESSR-VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           ER +  ++ L+ N++ A   +  V   +    +  + ++ D G G+  EE+P   +R  T
Sbjct: 318 ERMTQLVRNLVRNAVQASGGTAGVRVALWATEEEVYLEVRDQGPGIPPEELPRVFERFYT 377


>gi|312794029|ref|YP_004026952.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181169|gb|ADQ41339.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 612

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 11/49 (22%)

Query: 30  LIENS----L----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           L+EN+    +    D+   RV   +   G     +++DNG GM  +++ 
Sbjct: 505 LVENACIHGIEEKEDSG--RVTVRVKKEGVKLMIEVSDNGIGMDEKKLE 551


>gi|228903186|ref|ZP_04067320.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
 gi|228856468|gb|EEN00994.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFY 429


>gi|296125344|ref|YP_003632596.1| PAS/PAC sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
 gi|296017160|gb|ADG70397.1| PAS/PAC sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
          Length = 393

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 31  IENSLDA---ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N++DA       +   +      +   I D G G+  E++    + + T+K
Sbjct: 285 IQNAIDAMNDNKKEIYIKLKTIDNYAVISIKDTGIGIKEEDLNKIFEPYFTTK 337


>gi|226948318|ref|YP_002803409.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841821|gb|ACO84487.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGKDKIFIKVEDNGEGIPKEDLPHIFERFYRS 419


>gi|268590586|ref|ZP_06124807.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131]
 gi|291313974|gb|EFE54427.1| DNA topoisomerase IV, B subunit [Providencia rettgeri DSM 1131]
          Length = 631

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  +S +E ++        ++ D+G GM  +
Sbjct: 32 RPNHLAQEVIDNSVDEALAGHASHIEVILHAD--QSLEVIDDGRGMPVD 78


>gi|168178459|ref|ZP_02613123.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671153|gb|EDT83127.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 468

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGKDKIFIKVEDNGEGIPKEDLPHIFERFYRS 419


>gi|297582931|ref|YP_003698711.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141388|gb|ADH98145.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 425

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 25  IAIKELIENSL----DAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             +  LI N++    D     ++  I            ITDNG G+  EE  +      T
Sbjct: 312 SVLNNLISNAIESISDTG--IIDITINNPVSNSSLHILITDNGPGIPEEEQQLIFSPGFT 369

Query: 78  SKISD 82
           +K +D
Sbjct: 370 TKFND 374


>gi|146337179|ref|YP_001202227.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278]
 gi|146189985|emb|CAL73977.1| DNA gyrase subunit B [Bradyrhizobium sp. ORS278]
          Length = 812

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  ++RVE V+     +   + D+G G+ 
Sbjct: 55 VYEVVDNAIDEALAGYATRVEVVLNAD--NSVTVRDDGRGIP 94


>gi|146284122|ref|YP_001174275.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri A1501]
 gi|145572327|gb|ABP81433.1| DNA topoisomerase IV, B subunit [Pseudomonas stutzeri A1501]
          Length = 670

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 22/196 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  V+ ++     S  ++ D+G GM      EE    + 
Sbjct: 71  RPNHLAQEVIDNSVDEALAGHARAVQVILHQD--SSLEVIDDGRGMPVDIHPEEGVPGVE 128

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + + H   K S+      + G  G  +  + A+S  + +  +   +      A   + 
Sbjct: 129 LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVKRDGSEYRMSFAGGFKA 187

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
                  ++           +        +  S +     +  V++  A+  P +S +F 
Sbjct: 188 TDLEVIGSVGKRNTGTSVRFWADP----KYFDSPKFSITRLKHVLKAKAVLCPGLSVSFE 243

Query: 188 TIKSNRYKMNFQSTNG 203
             KS   K+ +   +G
Sbjct: 244 -DKSTGEKVEWHYEDG 258


>gi|298207321|ref|YP_003715500.1| nitrogen regulation protein ntrY [Croceibacter atlanticus HTCC2559]
 gi|83849957|gb|EAP87825.1| nitrogen regulation protein ntrY [Croceibacter atlanticus HTCC2559]
          Length = 470

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 26  AIKELIENSLDAESSR------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
            +  L++N++  +++       ++  ++         + DNG G+  +  P   +   T+
Sbjct: 371 VVTNLVKNAI--QATEEQENPMIKVDVSQDNYYVCIAVQDNGVGIPEDNKPKVFEPKFTT 428

Query: 79  K 79
           K
Sbjct: 429 K 429


>gi|75760732|ref|ZP_00740755.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491787|gb|EAO54980.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 484

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFY 429


>gi|115359437|ref|YP_776575.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ambifaria AMMD]
 gi|115284725|gb|ABI90241.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ambifaria AMMD]
          Length = 638

 Score = 43.1 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 25/99 (25%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI--- 46
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+       
Sbjct: 491 RIRDEGVQLD---VN-IAPGTTVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIEAAKV 546

Query: 47  ------AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                    G+    ++D+G G+  + +P   +   T+K
Sbjct: 547 DDANDADEAGRVRLTVSDSGAGIAPDVLPHLFEPFVTTK 585


>gi|325859713|ref|ZP_08172843.1| DNA topoisomerase IV subunit B [Prevotella denticola CRIS 18C-A]
 gi|325482639|gb|EGC85642.1| DNA topoisomerase IV subunit B [Prevotella denticola CRIS 18C-A]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 73/263 (27%), Gaps = 34/263 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMNAG-DRIEIDVEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S                +    +  
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVKSFRDGKVRELSFEKGNIRSDKTKKS 166

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           A   GT +                K+     +++ +++R        ++          +
Sbjct: 167 ADENGTYIYFE-------PDNTLFKNYSFHDDIVEEMLRNYTYLNTGLAIMYNGRRILSR 219

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G           A 
Sbjct: 220 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 279

Query: 249 QFYVFINGRTVQDKFILSTIRTA 271
           + ++    +    K+    IR  
Sbjct: 280 KEHIARTIKEFFGKYEYGDIRNG 302


>gi|324010994|gb|EGB80213.1| hypothetical protein HMPREF9533_05015 [Escherichia coli MS 60-1]
          Length = 737

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 28/113 (24%)

Query: 25  IAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----S 78
            A+ EL +N+ DA +  VE              + D+G GMT++E     +R  T    S
Sbjct: 24  TALSELFKNAHDAYADNVEVDFFRKEN---LLILRDDGLGMTTDEFE---ERWLTIGTSS 77

Query: 79  KISDDFSNIH------TFGFR---GEA----LPSIGAVS-HLTLMSRPPQNNT 117
           K+ DD   I+         FR   GE     L SI A+   + +++R  ++N 
Sbjct: 78  KLIDD-DAINKPAVDSNKAFRPIMGEKGIGRL-SIAAIGPQVLVLTRAKRDNE 128


>gi|310824892|ref|YP_003957250.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397964|gb|ADO75423.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 22  RPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+EN+L    D     +   +   G      ++D G G+ S++     +R+
Sbjct: 570 RLEQVISNLLENALKYSPDGG--TIRVSLEARGDVVLMTVSDPGIGIPSDQQQHLFERY 626


>gi|299140350|ref|ZP_07033513.1| Heat shock protein Hsp90-like protein [Acidobacterium sp. MP5ACTX8]
 gi|298597684|gb|EFI53859.1| Heat shock protein Hsp90-like protein [Acidobacterium sp. MP5ACTX8]
          Length = 621

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 43/164 (26%)

Query: 19  IIERPSI----AIKELIENSLDA-----------ES-------SRVETVIAGGGKSFFQI 56
           II          ++ELI NS DA           ++        R++  +    K+   I
Sbjct: 17  IIHSLYSHPEIFLRELISNSSDALDKLRHLTLTDDAFKGLAFDPRIDLELDEANKTL-TI 75

Query: 57  TDNGFGMTSEEI-------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGAV 103
            D G GM  E++         +  ++  S++S D             GF      S   V
Sbjct: 76  ADTGIGMNEEDLVAHLGTIARSGTKNFLSQLSGDAKRDSNLIGQFGVGF-----YSAFMV 130

Query: 104 S-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-NPGTIVEVR 145
           +  + ++SR        +    G+    + P      GT V + 
Sbjct: 131 ADRVEVVSRKAGEELAWRWTSDGKTGFDIEPAERLVAGTTVTLH 174


>gi|228910523|ref|ZP_04074337.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
 gi|228849087|gb|EEM93927.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
          Length = 484

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDTLPYIFERFY 429


>gi|156371382|ref|XP_001628743.1| predicted protein [Nematostella vectensis]
 gi|156215727|gb|EDO36680.1| predicted protein [Nematostella vectensis]
          Length = 1939

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 24/139 (17%)

Query: 29  ELIENSLDAESSR-----VETVI---AGGGKSFFQITDNGFGMTSEEIPM-AVQRHC--- 76
           EL++N+L A ++      +E  +      GK    + DNG GMT +E+   AV R     
Sbjct: 74  ELVDNALAATANNEDLRSIEIRLMFDDSIGKHAVCVLDNGRGMTPKELNNWAVYRLSKFN 133

Query: 77  ----TSKISDDF-------SNIHTFGFRG-EALPSIGAVSHLTLMSRPPQNNTGAQIAIS 124
               T K S D        S+I  FG  G +A+  IG+ + +   ++   +     I+  
Sbjct: 134 RPQVTLKQSTDGGPPRSLNSDISYFGVGGKQAIFFIGSATRMVTKTKDCSDVHELCISKD 193

Query: 125 GEKISSVRPVAMNPGTIVE 143
             +       ++  G I+ 
Sbjct: 194 EFERKERSRESIYSGHIIN 212


>gi|115374744|ref|ZP_01462020.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368221|gb|EAU67180.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 22  RPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+EN+L    D     +   +   G      ++D G G+ S++     +R+
Sbjct: 518 RLEQVISNLLENALKYSPDGG--TIRVSLEARGDVVLMTVSDPGIGIPSDQQQHLFERY 574


>gi|39995114|ref|NP_951065.1| DNA gyrase subunit B [Geobacter sulfurreducens PCA]
 gi|39981876|gb|AAR33338.1| DNA gyrase, B subunit [Geobacter sulfurreducens PCA]
 gi|298504144|gb|ADI82867.1| DNA gyrase, B subunit [Geobacter sulfurreducens KN400]
          Length = 795

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 29/184 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAV 72
           + E+++NS+D   A   + V   I   G     + DNG G+ ++          E+ + V
Sbjct: 43  VYEIVDNSIDEALAGYCNEVNVTIHLDG--SLTVVDNGRGIPTDIHPTEGKPAAEVALTV 100

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLM--------SRPPQNNTGAQI 121
             H   K  +    + + G  G  +  + A+S    L +         S    +      
Sbjct: 101 L-HAGGKFDNTSYKV-SGGLHGVGVSVVNALSRKLELEIRRDGKVYRQSYACGDPQTPLE 158

Query: 122 AISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK 181
            +   K    +   +   TI E  +  F + ++     +       IT    R    +  
Sbjct: 159 VMGETKKRGTKITFLPDDTIFETTEFSFDVLSQRLRELAFLNAGVRITITDEREEGKHHD 218

Query: 182 VSFT 185
             + 
Sbjct: 219 FHYE 222


>gi|113968350|ref|YP_732143.1| DNA gyrase subunit B [Shewanella sp. MR-4]
 gi|113883034|gb|ABI37086.1| DNA gyrase subunit B [Shewanella sp. MR-4]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCTDITITIHVDG--SVSVRDDGRGIP 80


>gi|114045517|ref|YP_736067.1| DNA gyrase subunit B [Shewanella sp. MR-7]
 gi|113886959|gb|ABI41010.1| DNA gyrase subunit B [Shewanella sp. MR-7]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCTDITITIHVDG--SVSVRDDGRGIP 80


>gi|117918471|ref|YP_867663.1| DNA gyrase subunit B [Shewanella sp. ANA-3]
 gi|117610803|gb|ABK46257.1| DNA gyrase subunit B [Shewanella sp. ANA-3]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCTDITITIHVDG--SVSVRDDGRGIP 80


>gi|332994513|gb|AEF04568.1| DNA topoisomerase IV subunit B [Alteromonas sp. SN2]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +S ++ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHASNIKVILHED--QSLEVIDDGRGMPVDIHPEEKISGV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  R   +N       +G+
Sbjct: 88  ELILSKLHAGGKFSNKNYA-FSGGLHGVGISVVNALSTRVEVTIR-RDSNVYQIAFANGD 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
           KI  +  +          R  F+  P    +  S +   + +   +R  A+  P +   F
Sbjct: 146 KIEELAVIDTCGKRNTGTRVHFWPDP---QYFDSAKFSASRLIHNLRAKAVLSPGLRIRF 202

Query: 187 STIKSNRYKMNFQSTNGNFPERISQ 211
                               + + Q
Sbjct: 203 --DNKIAKDSQEWYYEDGLQDYLYQ 225


>gi|323694887|ref|ZP_08109037.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673]
 gi|323500977|gb|EGB16889.1| DNA gyrase subunit B [Clostridium symbiosum WAL-14673]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I     +   + D+G G+  +
Sbjct: 39 VYEIVDNAVDEALAGFCDTIEVQINED--NSITVEDDGRGIPVD 80


>gi|323486745|ref|ZP_08092064.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum
          WAL-14163]
 gi|323399884|gb|EGA92263.1| hypothetical protein HMPREF9474_03815 [Clostridium symbiosum
          WAL-14163]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I     +   + D+G G+  +
Sbjct: 39 VYEIVDNAVDEALAGFCDTIEVQINED--NSITVEDDGRGIPVD 80


>gi|295108639|emb|CBL22592.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Ruminococcus obeum A2-162]
          Length = 382

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 14  IAAGEIIERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEI 68
           IA GE I R    I  +I N++   D     ++  +   G  F Q+   DNG G+ S+++
Sbjct: 263 IADGEQIRR---VIHNIISNAIKYMDKPKGVIQIRVKDVG-DFIQVEIEDNGKGIASKDL 318

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
                R        D S   + G  G  L SI
Sbjct: 319 TYIFDRFY----RTDVSRNSSKGGSGIGL-SI 345


>gi|295702526|ref|YP_003595601.1| malate two-component sensor histidine kinase MalK [Bacillus
           megaterium DSM 319]
 gi|294800185|gb|ADF37251.1| malate two-component sensor histidine kinase MalK [Bacillus
           megaterium DSM 319]
          Length = 528

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 16  AGEIIERPS---------IAIKELIENSLDA----ESSRVETV-IAGGGKSFFQITDNGF 61
           A E+I  PS           I  LI+N++D+     S +V  + +    K   Q+TD G 
Sbjct: 403 ADEVIPEPSDPHVTHHLITIIGNLIDNAIDSVHHQASKKVSVMLVYENNKLTIQVTDTGC 462

Query: 62  GMTSEEIPMAVQRHCTSK 79
           G+ S+ +    ++  ++K
Sbjct: 463 GIPSDTMNQIFKKGFSTK 480


>gi|332829228|gb|EGK01882.1| DNA gyrase, B subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 651

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I     +   + DNG G+  +
Sbjct: 46 VYEVVDNSIDEALAGYCDDIKVTIHED--NSISVKDNGRGIPVD 87


>gi|330970567|gb|EGH70633.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 165

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  LI N+LDA       R   +       G + + 
Sbjct: 29  IRDLPDATIW-VQAGE--TRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLY- 84

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 85  IRDNGPGFSQEALARAREPFFTTK 108


>gi|330939478|gb|EGH42819.1| sensor histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 163

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  LI N+LDA       R   +       G + + 
Sbjct: 27  IRDLPDATIW-VQAGE--TRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLY- 82

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 83  IRDNGPGFSQEALARAREPFFTTK 106


>gi|330901693|gb|EGH33112.1| sensor histidine kinase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 168

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  LI N+LDA       R   +       G + + 
Sbjct: 32  IRDLPDATIW-VQAGE--TRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLY- 87

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 88  IRDNGPGFSQEALARAREPFFTTK 111


>gi|325685102|gb|EGD27233.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          delbrueckii subsp. lactis DSM 20072]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +     +   + D+G G+  +
Sbjct: 57 EIIDNGIDEALAGFATKIEVTVNED--NSVTVQDDGRGIPVD 96


>gi|313122780|ref|YP_004033039.1| DNA gyrase subunit b [Lactobacillus delbrueckii subsp. bulgaricus
          ND02]
 gi|312279343|gb|ADQ60062.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
          ND02]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +     +   + D+G G+  +
Sbjct: 57 EIIDNGIDEALAGFATKIEVTVNED--NSVTVQDDGRGIPVD 96


>gi|317055413|ref|YP_004103880.1| ATP-binding region ATPase domain-containing protein [Ruminococcus
           albus 7]
 gi|315447682|gb|ADU21246.1| ATP-binding region ATPase domain protein [Ruminococcus albus 7]
          Length = 488

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 12/157 (7%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
               A+ ++++NS+ A +S V    +      +    D+G GM   EI  A  R+  SK 
Sbjct: 23  NLEAAVADIVDNSIAAMASEVNIFFSPYDAVPYVTFLDDGVGMNETEINNA-MRYG-SKS 80

Query: 81  SDDFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP 138
           S D  +    G  G  L   S+     LT++S+           + G K           
Sbjct: 81  SLDERDRTDLGRFGLGLKTASLSQCRSLTVISKQN-------TRVEGRKWDLDSVYTSGE 133

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRM 175
            +++ + +       +   L+S    T +I + + RM
Sbjct: 134 WSLIVLDESDIKSIPQYKQLESFSHGTLIIWEKLDRM 170


>gi|302186967|ref|ZP_07263640.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
          Length = 604

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  LI N+LDA       R   +       G + + 
Sbjct: 468 IRDLPDATIW-VQAGE--TRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLY- 523

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 524 IRDNGPGFSQEALARAREPFFTTK 547


>gi|300811991|ref|ZP_07092447.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300497017|gb|EFK32083.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +     +   + D+G G+  +
Sbjct: 57 EIIDNGIDEALAGFATKIEVTVNED--NSVTVQDDGRGIPVD 96


>gi|295094327|emb|CBK83418.1| DNA gyrase subunit B [Coprococcus sp. ART55/1]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + ++  I     +   + D+G G+ 
Sbjct: 40 VYEIVDNSVDEALAGYCTHIQVYINED--NSITVVDDGRGIP 79


>gi|289672182|ref|ZP_06493072.1| sensor histidine kinase [Pseudomonas syringae pv. syringae FF5]
          Length = 629

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  LI N+LDA       R   +       G + + 
Sbjct: 493 IRDLPDATIW-VQAGE--TRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLY- 548

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 549 IRDNGPGFSQEALARAREPFFTTK 572


>gi|210613902|ref|ZP_03289966.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787]
 gi|210150927|gb|EEA81935.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787]
          Length = 248

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 17/81 (20%)

Query: 8   EKIINQI-----AAGEIIERPSIAIKELIENSLDAES--SRVETVIAGGGKSFF--QITD 58
           +  INQI        E+          L+ N+ DA S    +        K     Q+ D
Sbjct: 108 DSSINQITGDKTKLQEVFLN-------LLRNAADAASPDGTISMTAEQ-SKDSIIIQVQD 159

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
           NG G++ E +    +   T K
Sbjct: 160 NGCGISKEHLSSIFEPFTTYK 180


>gi|163814983|ref|ZP_02206370.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC
          27759]
 gi|158449666|gb|EDP26661.1| hypothetical protein COPEUT_01136 [Coprococcus eutactus ATCC
          27759]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + ++  I     +   + D+G G+ 
Sbjct: 40 VYEIVDNSVDEALAGYCTHIQVYINED--NSITVVDDGRGIP 79


>gi|153871501|ref|ZP_02000656.1| histidine protein kinase PhoR [Beggiatoa sp. PS]
 gi|152072034|gb|EDN69345.1| histidine protein kinase PhoR [Beggiatoa sp. PS]
          Length = 435

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 6   LSEKIINQIAAGEIIER-PSIAIKELIENSLD---AESSRVETV--IAGGGKSFFQITDN 59
           L  +   +I A   +E   +     LI+N++    A  + V     +   G++  Q+ DN
Sbjct: 309 LDTEPTLKIRA---VENEINSVCLNLIKNAVKHTPAG-TTVNIRWFLNDTGQACLQVIDN 364

Query: 60  GFGMTSEEIPMAVQRHC 76
           G G+ +E+IP   +R  
Sbjct: 365 GKGIPAEKIPHLTERFY 381


>gi|104773262|ref|YP_618242.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC 11842]
 gi|103422343|emb|CAI96851.1| DNA gyrase, subunit B [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC 11842]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +     +   + D+G G+  +
Sbjct: 57 EIIDNGIDEALAGFATKIEVTVNED--NSVTVQDDGRGIPVD 96


>gi|66048161|ref|YP_238002.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a]
 gi|63258868|gb|AAY39964.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 604

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  LI N+LDA       R   +       G + + 
Sbjct: 468 IRDLPDATIW-VQAGE--TRLRQVLGNLIANALDALTEKGPPRRLWISVEQTAEGVNLY- 523

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 524 IRDNGPGFSQEALARAREPFFTTK 547


>gi|68072457|ref|XP_678142.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498514|emb|CAH95817.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 546

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 27/77 (35%)

Query: 27  IKELIENSLDA-----ESSRVETVIAGG---------------GKSF----FQITDNGFG 62
           +KEL +NS+DA         ++     G               G +         DNG G
Sbjct: 35  VKELFDNSIDALCNNKGDENID---EEGQGTQEKKIEIEIKEYGINSSFYEIICRDNGEG 91

Query: 63  MTSEEIPMAVQRHCTSK 79
           +  +++    +   TSK
Sbjct: 92  IEVKDLEKISEMFLTSK 108


>gi|91976851|ref|YP_569510.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91683307|gb|ABE39609.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 759

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 17  GEIIERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           GE+          LI N++   D  +  +E  +  G  + + + DNG G+   +  +  Q
Sbjct: 650 GEVFSN-------LIGNAIKYNDKPARWIEIGVEQGHPARYYVRDNGIGIEETDQQLIFQ 702

Query: 74  RHC 76
              
Sbjct: 703 MFH 705


>gi|116513233|ref|YP_812139.1| DNA gyrase, B subunit [Lactobacillus delbrueckii subsp.
          bulgaricus ATCC BAA-365]
 gi|116092548|gb|ABJ57701.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
          ATCC BAA-365]
 gi|325124860|gb|ADY84190.1| DNA gyrase subunit B [Lactobacillus delbrueckii subsp. bulgaricus
          2038]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A  ++++E  +     +   + D+G G+  +
Sbjct: 57 EIIDNGIDEALAGFATKIEVTVNED--NSVTVQDDGRGIPVD 96


>gi|34763292|ref|ZP_00144250.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887040|gb|EAA24153.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 639

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 75/204 (36%), Gaps = 23/204 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A    ++E  I    ++  ++ DNG G+ ++          EI + V  
Sbjct: 43  EIVDNSVDEALAGYCDKIEVKILP--ENIIEVVDNGRGIPTDIHPKYGKSALEIVLTVL- 99

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  +D   + + G  G  +  + A+S  L +  R      G        +      
Sbjct: 100 HAGGKFENDNYKV-SGGLHGVGVSVVNALSEWLEVEVR----KNGTIHYQKYHRGKPEED 154

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           V +     +          A     ++       +++ ++ +A     ++   S ++   
Sbjct: 155 VKIVGSCDINEHGTIVRFKADGEIFETLIYNYFTLSNRLKELAYLNKGLTIILSDLRKEE 214

Query: 194 YKMNFQSTNGNFPERISQVIGEDF 217
            K      +G   + +++++ ED 
Sbjct: 215 KKEEIYKFDGGILDFLNEIVKEDT 238


>gi|326560873|gb|EGE11238.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           7169]
 gi|326566561|gb|EGE16707.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           12P80B1]
 gi|326569772|gb|EGE19822.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC8]
 gi|326570803|gb|EGE20828.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC1]
 gi|326577732|gb|EGE27608.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           O35E]
          Length = 590

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
               ++ L+ N+L  A+S+    +++ G   G++F  + D+G G++ E          
Sbjct: 456 LHRVVQNLVGNALRYAQST---IMLSAGVVKGEAFISVEDDGHGISEENREKVFIPFA 510


>gi|320321107|gb|EFW77252.1| hypothetical protein PsgB076_29500 [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 807

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II  I    AG        AI EL+ NS+DA+++ +   +   G   F   D+G G
Sbjct: 7  LDPEIIQHIIHSQAG----SIGKAIIELVMNSVDADATALRLTMTKEG---FHCADDGRG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            + E++     R  T
Sbjct: 60 FASREDVLRYFGRFGT 75


>gi|315290904|gb|EFU50273.1| hypothetical protein HMPREF9544_04687 [Escherichia coli MS 153-1]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 24/111 (21%)

Query: 25  IAIKELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----S 78
            A+ EL +N+ DA +  VE              + D+G GMT++E     +R  T    S
Sbjct: 24  TALSELFKNAHDAYADNVEVDFFRKEN---LLILRDDGLGMTTDEFE---ERWLTIGTSS 77

Query: 79  KISDD----FSNIHT-------FGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
           K+ DD       + +        G +G    SI A+   + +++R  ++N 
Sbjct: 78  KLIDDDAINKPAVDSNKAFRPIMGEKGIGRLSIAAIGPQVLVLTRAKRDNE 128


>gi|288959952|ref|YP_003450292.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912260|dbj|BAI73748.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 687

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 27  IKELIENSLDAESS---RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++ L+EN+L    +   R++      GG+   ++ D G G+  + +        
Sbjct: 442 VRNLVENAL--RYTEQGRIDIECRQAGGRLLIEVRDTGIGIPPDHLERIWDEFH 493


>gi|302382299|ref|YP_003818122.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192927|gb|ADL00499.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 524

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 18  EIIERPSIAIKELIENSLDAES--SRVETVIA----GGGKSFFQITDNGFGMTSEEIPMA 71
           ++I         LI N+LDA +  +     +      GG     I+DNG G+  +     
Sbjct: 415 QVIHN-------LIRNALDATALVTEPRLHVTTGPHDGGMVMISISDNGPGIAPDVEGRL 467

Query: 72  VQRHCTSK 79
            +   +SK
Sbjct: 468 FEPFVSSK 475


>gi|260913908|ref|ZP_05920382.1| sensor histidine kinase [Pasteurella dagmatis ATCC 43325]
 gi|260631995|gb|EEX50172.1| sensor histidine kinase [Pasteurella dagmatis ATCC 43325]
          Length = 572

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 33  NSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+  A++++++  +      ++  + DNG G    E+        TSK
Sbjct: 478 NASQAKATQIQIDVKETENNTYIHLLDNGTGFKPTELDFPFVPFRTSK 525


>gi|254974440|ref|ZP_05270912.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255091832|ref|ZP_05321310.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255313567|ref|ZP_05355150.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255516251|ref|ZP_05383927.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255649349|ref|ZP_05396251.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|306519439|ref|ZP_07405786.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 309

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 24  SIAIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           S  +  L++N L A  ++ +++  +         ++ D+G G+  E +P   +R
Sbjct: 207 SRVVNNLVQNVL-AHSKARQIKITMSEDSRMVLLRVDDDGVGIARENLPHIFER 259


>gi|157375418|ref|YP_001474018.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157317792|gb|ABV36890.1| histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 558

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NSLDA  S       +   +    ++   I DNG G++ E +        TSK
Sbjct: 459 LIRNSLDAMESEALPELGIRL-VKEDNQALIVIEDNGIGLSEEALSRLFFPFETSK 513


>gi|49477047|ref|YP_035263.1| sensor histidine kinase; MrsK2 protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49328603|gb|AAT59249.1| possible sensor histidine kinase; possible MrsK2 protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 6   LSEKIINQIAAGE-IIERPSIAIKELIENSL---DAESSRVETVIAGG-GKSFFQITDNG 60
           L E+II  I A + +I+R   AI  L+ N+L   D   + ++  I    G +   I DNG
Sbjct: 346 LQEEII--IKADQGLIQR---AIVNLLNNALIHTD-NKTLIQVCIKQTIGYTIVTIEDNG 399

Query: 61  FGMTSEEIPMAVQRH 75
            G+   ++P    R+
Sbjct: 400 EGINKSDLPHIFDRY 414


>gi|326566898|gb|EGE17037.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           103P14B1]
 gi|326571622|gb|EGE21637.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           BC7]
 gi|326575099|gb|EGE25027.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           CO72]
 gi|326576815|gb|EGE26722.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           101P30B1]
          Length = 590

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 7/58 (12%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
               ++ L+ N+L  A+S+    +++ G   G++F  + D+G G++ E          
Sbjct: 456 LHRVVQNLVGNALRYAQST---IMLSAGVVKGEAFISVEDDGHGISEENREKVFIPFA 510


>gi|326387905|ref|ZP_08209511.1| multi-sensor signal transduction histidine kinase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207951|gb|EGD58762.1| multi-sensor signal transduction histidine kinase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 717

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSE 66
           +I AG   E     +  L++N+LDA  + +  V+     G +   ++ D+G GM+++
Sbjct: 584 RILAGR--EPLEQVLSHLVQNALDATDNGLGVVLNTRVDGAEGVIEVIDSGCGMSAD 638


>gi|324997472|ref|ZP_08118584.1| heat shock protein 90 [Pseudonocardia sp. P1]
          Length = 629

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 48/174 (27%)

Query: 27  IKELIENSLDA--------------ESSRVETVIA---GGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA               +   +  +      G     + DNG GMT +E+ 
Sbjct: 31  LRELISNASDALDKVRLAAYQDKELGAETDDLHVELVADPGARTLTVRDNGIGMTRDEVV 90

Query: 70  MAVQRHCTS-------KISD--------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRPP 113
             +     S       K+ D        D       GF      S   V+  + L +R  
Sbjct: 91  ELIGTIAKSGTAELLAKLQDAGDGDQARDLIGQFGVGF-----YSSFMVADRVELTTRKA 145

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNL 167
               G +    GE             TI +V D        L+   S+  +   
Sbjct: 146 GTGGGVRWESDGE----------GSYTIADVDDAPQGTAVTLHLKASDAEDQMH 189


>gi|300772341|ref|ZP_07082211.1| sensor sensor histidine kinase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760644|gb|EFK57470.1| sensor sensor histidine kinase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 443

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 30  LIENSLDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           L+ NS+   +  V        G     + D+G G+   E P   ++    +I  D
Sbjct: 345 LLNNSIKYGAKSVSLSFELNEGLVKIVVKDDGVGIDKLEQPYIFEKFY--RIQKD 397


>gi|172041314|ref|YP_001801028.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
 gi|171852618|emb|CAQ05594.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
          Length = 529

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQR 74
           R    I  L+ N+L     DA    V+  +           + D+G G+ ++ +P   +R
Sbjct: 409 RLHQVISNLLTNALKHAGEDAN---VKISLLKTSPELVTIDVQDDGEGIPADALPHLFER 465

Query: 75  HC 76
             
Sbjct: 466 FY 467


>gi|154249490|ref|YP_001410315.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
 gi|154153426|gb|ABS60658.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
          Length = 179

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 32 ENSLDAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS++A++  V+  I     K +F + D+  G+  E +        T
Sbjct: 15 ENSINAKAKNVKITIKETDDKFYFSVEDDAGGIRPEILEKIFDPFVT 61


>gi|51473761|ref|YP_067518.1| DNA gyrase subunit B [Rickettsia typhi str. Wilmington]
 gi|81826298|sp|Q68WF6|GYRB_RICTY RecName: Full=DNA gyrase subunit B
 gi|51460073|gb|AAU04036.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 807

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   +   G     ++DNG G+  E
Sbjct: 50 EVVDNSIDEALAGYCDLIRVTLNKNG--SVTVSDNGRGIPVE 89


>gi|300693051|ref|YP_003749024.1| sensor histidine kinase, transcriptional regulator of
           c4-dicarboxylate transport [Ralstonia solanacearum
           PSI07]
 gi|299075088|emb|CBJ34369.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           PSI07]
          Length = 635

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 22  RPSIAIKELIENSLDA-------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           R    +  LI N++DA       E++ V   +          + D G G+    +    +
Sbjct: 520 RLEQVLVNLIRNAIDATAEAPQPEAASVRVTVDADDALVRITVRDAGPGIAPGVLSHLFE 579

Query: 74  RHCTSK 79
              T+K
Sbjct: 580 PFFTTK 585


>gi|296141304|ref|YP_003648547.1| integral membrane sensor signal transduction histidine kinase
           [Tsukamurella paurometabola DSM 20162]
 gi|296029438|gb|ADG80208.1| integral membrane sensor signal transduction histidine kinase
           [Tsukamurella paurometabola DSM 20162]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  L+ N+L     DA + RV         +  Q+ D G GM   E     +R 
Sbjct: 361 DRLHQVVTNLVSNALRHTPDDA-AVRVRIAADDA-CAQVQVADTGPGMEPGEASRVFERF 418

Query: 76  C 76
            
Sbjct: 419 Y 419


>gi|242053283|ref|XP_002455787.1| hypothetical protein SORBIDRAFT_03g025250 [Sorghum bicolor]
 gi|241927762|gb|EES00907.1| hypothetical protein SORBIDRAFT_03g025250 [Sorghum bicolor]
          Length = 676

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 26  AIKELIENSLDA---ESSRVET-VIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           AI EL++N++D     ++ V          G     + D+G GM  E +   +    + K
Sbjct: 139 AIAELLDNAIDEVNNGATFVRVNKFKNPRDGNPSLLVQDDGGGMDPEALRRCMSFGFSDK 198

Query: 80  ISDDFSNIHTFGFR 93
            SD F   +  GF+
Sbjct: 199 QSDAFIGQYGNGFK 212


>gi|229028368|ref|ZP_04184492.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228732916|gb|EEL83774.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 534

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAES----SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A +     +VE  I  G      + D G G+  EEI     +  ++K
Sbjct: 434 LIDNALEAVANCEKKQVEVEIQYGDTLIITVQDTGKGIQEEEIGALFTKGYSTK 487


>gi|206889651|ref|YP_002248593.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741589|gb|ACI20646.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 457

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 14/85 (16%)

Query: 41  RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP- 98
           +V+  I      +  ++ D G GM  E++     R              + G +G  L  
Sbjct: 365 KVDIYIKENQDYALIEVKDTGVGMPEEDLDKVFDRFY------RIDKARSGGIKGAGLGL 418

Query: 99  SIG------AVSHLTLMSRPPQNNT 117
           SI           + + SR  +  T
Sbjct: 419 SICKEIVRLHGGKMEIKSRIGEGTT 443


>gi|182418104|ref|ZP_02949407.1| two-component sensor histidine kinase [Clostridium butyricum 5521]
 gi|237668685|ref|ZP_04528669.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378073|gb|EDT75610.1| two-component sensor histidine kinase [Clostridium butyricum 5521]
 gi|237657033|gb|EEP54589.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 597

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 10/47 (21%)

Query: 31  IENS-------LDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIP 69
           IEN+       +D+ S  +   +    ++   +I DNG GMTSE++ 
Sbjct: 492 IENAFFHAFTDIDSGS--IHVFVNKNNENLICEIIDNGIGMTSEDLK 536


>gi|145539011|ref|XP_001455200.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422999|emb|CAK87803.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3578

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 298 NVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
           N++  K+ ++  N   I  FI  S      KK            ++ F       T L  
Sbjct: 182 NINYLKTLLKQMNAQFIPQFIQDSSWPENVKKEFLAQLHKFMATLTEFSFSQEGITELYI 241

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
               L N ++    ++       +L        +  +  E +             + +  
Sbjct: 242 PNEDLNNIEQASHDKDLLQRLEAILLHWQRQIKDIVNNQELAIENENA-----GPLDEIA 296

Query: 418 IISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECALIMEHD 477
              Q  + L     H   E+   +++ Q  + ++         E I L   +    +E+ 
Sbjct: 297 YWRQRKNNL--SHIHEQLEKPELKRIIQILSDSQYVQSFKDVTENIKLGSSQAEDNLENL 354

Query: 478 EDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTLQDRIENIL 537
           + L+    + E   P     REIP +L       L R  +  I + S  +   +RI+ ++
Sbjct: 355 KILYEPCKQLETATP-----REIPELLPNL----LFR--VRYIWEKSKYFNTPERIQGLI 403

Query: 538 ATMA------CYGSIRSGRKM--QSIEMNRLLREMEKNPNSSQCNHGRPTFIKLKLSDIE 589
             ++      C  SI     +     +  + L +  +          +  + ++ ++ IE
Sbjct: 404 HKISNEIIKRCKSSININDMLDGDVEQCIQDLNDSIECGEQW-----KKIYQRMSVA-IE 457

Query: 590 KL 591
           K+
Sbjct: 458 KM 459


>gi|115705897|ref|XP_001204211.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115757273|ref|XP_001184072.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 657

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 89/287 (31%), Gaps = 39/287 (13%)

Query: 24  SIAIKELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPM-AVQR 74
           + AI ELI+NSL A      + ++E  +     G KS   + DNG GMT+ E+   A+ R
Sbjct: 66  AFAIAELIDNSLAATVNNVGTQQIEIRLYLDETGDKSMVCVLDNGKGMTTTELNNWAIYR 125

Query: 75  HCTSKISD--------------------DF-----SNIHTFGFRG-EALPSIGAVSHLTL 108
              SK +                     D      S+I  FG  G +A+  IG  + +  
Sbjct: 126 L--SKFNRKRQRLNPENNSSHLGTARSLDIPRSLNSDISYFGVGGKQAVFFIGDSARM-- 181

Query: 109 MSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLI 168
           +++P  +    ++ +S +K         +  + +         P   + +          
Sbjct: 182 ITKPKDSKDVHEMTVSKKKFERREKNKEDIYSDIITHRQPGLKPGECSHVSPPGDVILHK 241

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
                     +  V  T       ++  +  S+       I          N   L+   
Sbjct: 242 LIKEEEGKENFTHVVITSIKSHHIKFLKDDFSSWSRKLANIYHYYIHGPQGNQSHLSNSM 301

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAET 275
                       +            +N R ++D    + IR A    
Sbjct: 302 YRPPSPYKNIDISITMYMKGHTPQHLNLRDIKDDPQSNFIRFAKDTF 348


>gi|120403110|ref|YP_952939.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955928|gb|ABM12933.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 454

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 31  IENSLDA------ESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           I+N++ A       ++++   +  +  G     + DNG G+  EE     +R  
Sbjct: 353 IDNAI-ANAVKHGGATQIRLSVVSSQSGVE-IAVDDNGSGVPEEERAAVFERFH 404


>gi|89900330|ref|YP_522801.1| putative PAS/PAC sensor protein [Rhodoferax ferrireducens T118]
 gi|89345067|gb|ABD69270.1| putative PAS/PAC sensor protein [Rhodoferax ferrireducens T118]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 26  AIKELIENSL-DAESSRVETVIAGGGKSF-FQITDNGFGMTS 65
             +E +EN+L  A +S +   + G  +S   Q++DNG G+ +
Sbjct: 400 VAREALENALRHANASAIAVRLVGTQQSLQLQVSDNGVGIPA 441


>gi|77917622|ref|YP_355437.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380]
 gi|77543705|gb|ABA87267.1| DNA gyrase subunit B [Pelobacter carbinolicus DSM 2380]
          Length = 795

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +  ++   G     + DNG G+  +
Sbjct: 43 VYEVVDNSIDESLAGVCDEISVILHLDG--SVTVEDNGRGIPVD 84


>gi|148261868|ref|YP_001235995.1| DNA gyrase, B subunit [Acidiphilium cryptum JF-5]
 gi|326405373|ref|YP_004285455.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301]
 gi|146403549|gb|ABQ32076.1| DNA gyrase subunit B [Acidiphilium cryptum JF-5]
 gi|325052235|dbj|BAJ82573.1| DNA gyrase subunit B [Acidiphilium multivorum AIU301]
          Length = 812

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+N++D   A  + RV+ V+ G G     +TDNG G+ ++
Sbjct: 61  EIIDNAVDEAQAGFADRVDVVLNGDG--SMTVTDNGRGIPTD 100


>gi|329954849|ref|ZP_08295866.1| Hsp90 protein [Bacteroides clarus YIT 12056]
 gi|328526953|gb|EGF53964.1| Hsp90 protein [Bacteroides clarus YIT 12056]
          Length = 682

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 34/146 (23%)

Query: 27  IKELIENSLDA---------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           ++EL+ N++DA               E+  +   ++  GK    ++D+G G+T+EEI   
Sbjct: 29  LRELVSNAVDATQKLKTLASIGEFKGEAGDLTVHVSL-GKDTITVSDHGIGLTAEEIDKY 87

Query: 72  VQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNTGA 119
           + +   S       K  +D + I      GF      S   V+  + ++++         
Sbjct: 88  INQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYQDGAKAV 142

Query: 120 QIAIS-GEKISSVRPVAMNPGTIVEV 144
           +       + +         GT + +
Sbjct: 143 KWTCDGSPEFTIEDTDKAERGTDIVL 168


>gi|326578064|gb|EGE27924.1| DNA gyrase subunit B [Moraxella catarrhalis O35E]
          Length = 819

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 23/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +  ++         + DNG G+      EE   A +      H
Sbjct: 55  EVVDNAIDEALAGHCDEINIIVHDD--ESVSVMDNGRGIPVDIHPEEGVSAAEVIMTVLH 112

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++         Q    G   + +  + 
Sbjct: 113 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLILTIWRDGYAHTQNYTDGVPDAPLAKLE 171

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
            +  T  +VR  F+  P+   F   +  + +++   +R ++     V    +  +++  +
Sbjct: 172 PSTQTGTQVR--FY--PSFEIFKGVQHFDYDILAKRLRELSFLNSGVRIVLTDERTSTTQ 227

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +      G   E +S + G     N +          +     +   +     +   F N
Sbjct: 228 V--FEHKGGLSEFVSYINGGKHTLNDIFHFTADGADGIGVEVALQW-SDSYNEKVLCFTN 284

Query: 256 GRTVQD 261
               +D
Sbjct: 285 NIPQKD 290


>gi|315940111|gb|ADU56234.1| DNA gyrase subunit B [Nocardia jinanensis]
          Length = 576

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +++VE  + A GG    Q+ D+G G+ 
Sbjct: 17 EVVDNSVDEAMAGHATKVEVTLLADGG---VQVVDDGRGIP 54


>gi|312877819|ref|ZP_07737768.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795403|gb|EFR11783.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 612

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 11/49 (22%)

Query: 30  LIENS----L----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           L+EN+    +    D+   RV   +   G     +++DNG GM  +++ 
Sbjct: 505 LVENACIHGIEEKEDSG--RVTVRVKKEGVKLMIEVSDNGIGMDEKKLE 551


>gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
 gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
          Length = 650

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 21  ERPSIAIKELIENSLDAESS------RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           +R +  +  LIEN++           +VE   +  G     +I DNG G+  +++     
Sbjct: 542 DRITQVLTNLIENAI----KFSPVNGKVEIQALKEGNSVHIKIIDNGPGIPKKDLDRIFD 597

Query: 74  RHC 76
           R  
Sbjct: 598 RFY 600


>gi|300857303|ref|YP_003782287.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437418|gb|ADK17185.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R +  +  L++N++   D     ++      G K+   + ++G G+   ++     R  
Sbjct: 364 DRITQVVTNLVDNAIKYSDIG-GNIKVSTKVKGEKAVVSVYNDGSGIPESDLKHIWDRFY 422

Query: 77  ------TSKISDDF 84
                 TSK+S   
Sbjct: 423 KVDKSRTSKVSTGL 436


>gi|296269308|ref|YP_003651940.1| signal transduction histidine kinase LytS [Thermobispora bispora
           DSM 43833]
 gi|296092095|gb|ADG88047.1| signal transduction histidine kinase, LytS [Thermobispora bispora
           DSM 43833]
          Length = 432

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 30  LIENSLDAE-SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQ 73
           L+EN++       V  VI   G      + D+G GM  +++   + 
Sbjct: 320 LVENAIKHGMPGEVRVVIKDAGSEAHIWVEDDGIGMDPDQVKAVLS 365


>gi|241205229|ref|YP_002976325.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859119|gb|ACS56786.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 450

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 26  AIKELIENSLDAE--SSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ N++D    S  +   ++G   G     +TD G G+ +E   +  +   
Sbjct: 353 AVSNLVRNAIDHGGNSGMIAVSVSGSPSGGERITVTDEGPGIPAEHRELVFEPFY 407


>gi|153003758|ref|YP_001378083.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027331|gb|ABS25099.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA  +R +  +      GG +  ++ D G G+             T+K
Sbjct: 354 LVQNALDASPARAQVEVEASLDPGGGARVRVLDRGRGVDPSLADALFSPGATTK 407


>gi|332185128|ref|ZP_08386877.1| HAMP domain protein [Sphingomonas sp. S17]
 gi|332014852|gb|EGI56908.1| HAMP domain protein [Sphingomonas sp. S17]
          Length = 441

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 30  LIENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           L+EN+L      V   +A  G +    ++ D+G G+  + + + ++      +  D +  
Sbjct: 342 LVENALHYGEHAV-ITLAADGATGVHIRVEDDGPGIPEDSLELVLEPF----VRLDAARR 396

Query: 88  H-TFGFRGEALPSIGAVSHL 106
             T GF G  L SI  VS +
Sbjct: 397 RDTVGF-GLGL-SI--VSRV 412


>gi|296394764|ref|YP_003659648.1| GAF sensor signal transduction histidine kinase [Segniliparus
           rotundus DSM 44985]
 gi|296181911|gb|ADG98817.1| GAF sensor signal transduction histidine kinase [Segniliparus
           rotundus DSM 44985]
          Length = 561

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
             ++E + N L  A ++ +   +  GG     + DNG G+  
Sbjct: 480 AVVREAVTNVLRHAGATELSITVTVGGDFVIDVADNGKGVPE 521


>gi|291459211|ref|ZP_06598601.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291418465|gb|EFE92184.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   +++   +   G     + DNG G+ 
Sbjct: 41 EILDNSVDEHLAGYCTKIWVTLDSDG--SCTVRDNGRGIP 78


>gi|284923056|emb|CBG36149.1| topoisomerase IV subunit B [Escherichia coli 042]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 23/200 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR-H 75
           E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    + + + R H
Sbjct: 38  EVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K S+      + G  G  +  + A+S  + +  R              +        
Sbjct: 96  AGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSFTFSTIKSN 192
                        +        F  S +   + +T V++  A+  P  +++F      + 
Sbjct: 155 TCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE 210

Query: 193 RYKMNFQSTNGNFPERISQV 212
           +        N    E ++ +
Sbjct: 211 QRWCYQDGLNDYLAEAVNGL 230


>gi|269962694|ref|ZP_06177039.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3]
 gi|269832617|gb|EEZ86731.1| DNA gyrase, subunit B [Vibrio harveyi 1DA3]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   +TD+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 DTDQTGTQIRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-VDEREADK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 213 SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|256959762|ref|ZP_05563933.1| predicted protein [Enterococcus faecalis Merz96]
 gi|256950258|gb|EEU66890.1| predicted protein [Enterococcus faecalis Merz96]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 550 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 596


>gi|171741318|ref|ZP_02917125.1| hypothetical protein BIFDEN_00397 [Bifidobacterium dentium ATCC
           27678]
 gi|283455322|ref|YP_003359886.1| phosphate regulon sensor protein phoR [Bifidobacterium dentium Bd1]
 gi|171276932|gb|EDT44593.1| hypothetical protein BIFDEN_00397 [Bifidobacterium dentium ATCC
           27678]
 gi|283101956|gb|ADB09062.1| Phosphate regulon sensor protein phoR [Bifidobacterium dentium Bd1]
          Length = 456

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 25  IAIKELIENSLDAES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            A+K L+EN+++     + V   I   GGK   ++ D G G+ +  +    +R  
Sbjct: 323 TAVKNLVENAVNYSPMNTTVAVGIGHEGGKVTIRVVDQGIGIPAPSLDRIFERFY 377


>gi|163784002|ref|ZP_02178964.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880724|gb|EDP74266.1| gyrase B [Hydrogenivirga sp. 128-5-R1-1]
          Length = 414

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++N++D   A  +  +  ++   G +  +  D+G G+  +
Sbjct: 43 ELVDNAVDEAMAGFAKNIFVILHEDGSATIE--DDGRGIPVD 82


>gi|156972780|ref|YP_001443687.1| DNA gyrase subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156524374|gb|ABU69460.1| hypothetical protein VIBHAR_00445 [Vibrio harveyi ATCC BAA-1116]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   +TD+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 DTDQTGTQIRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-VDEREADK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 213 SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|153835131|ref|ZP_01987798.1| DNA gyrase, B subunit [Vibrio harveyi HY01]
 gi|148868403|gb|EDL67517.1| DNA gyrase, B subunit [Vibrio harveyi HY01]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   +TD+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 159 DTDQTGTQIRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-VDEREADK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 213 SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|260682520|ref|YP_003213805.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260686119|ref|YP_003217252.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|260208683|emb|CBA61472.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260212135|emb|CBE02771.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 24  SIAIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           S  +  L++N L A  ++ +++  +         ++ D+G G+  E +P   +R
Sbjct: 209 SRVVNNLVQNVL-AHSKARQIKITMSEDSRMVLLRVDDDGVGIARENLPHIFER 261


>gi|312888988|ref|ZP_07748548.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311298506|gb|EFQ75615.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 105

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 30 LIENSLD---AESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          L+ N++    A S+ +    +   G     ++D G G+ ++++P   +R+ 
Sbjct: 5  LVSNAVKYAAAGST-IRLSCVKADGIVQVSVSDEGIGINADDLPRLFERYY 54


>gi|299117008|emb|CBN73779.1| DNA topoisomerase IV subunit B [Ectocarpus siliculosus]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A     V   +   G     + DNG G+  +
Sbjct: 78  EVVDNAIDEALAGYCDTVYVTLEEDG--SCTVRDNGRGIPCD 117


>gi|294777726|ref|ZP_06743175.1| Hsp90 protein [Bacteroides vulgatus PC510]
 gi|294448426|gb|EFG16977.1| Hsp90 protein [Bacteroides vulgatus PC510]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 37/142 (26%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     ++  +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASKGEFKGEMGDLTIKVSL---GKDTITISDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHQEGAQ 140

Query: 118 GAQIAISGEKISSVRPVAMNPG 139
             +    G    ++  V     
Sbjct: 141 AVKWTCDGSPEFTIENVEKESR 162


>gi|315505772|ref|YP_004084659.1| heat shock protein hsp90-like protein [Micromonospora sp. L5]
 gi|315412391|gb|ADU10508.1| Heat shock protein Hsp90-like protein [Micromonospora sp. L5]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 43/155 (27%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA               +      +E  +    ++   + DNG GM  +E+
Sbjct: 33  LRELISNASDALDKLRLESLVDKELSADTSDLHIEIEVDKDARTL-TVRDNGIGMNRDEV 91

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGE---ALPS---IGA----------VS-HLTLMSR 111
              +     S  ++    +       E   A  S   IG           V+  +TL++R
Sbjct: 92  VGLIGTIAKSGTAELLRKLR------ESADAAASQELIGQFGVGFYATFMVADRVTLLTR 145

Query: 112 PPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVR 145
               + G +   +GE   S+  V     GT V + 
Sbjct: 146 RAGQSGGTRWESAGEGTYSIEEVEDAPQGTSVTLH 180


>gi|302867824|ref|YP_003836461.1| heat shock protein hsp90-like [Micromonospora aurantiaca ATCC
           27029]
 gi|302570683|gb|ADL46885.1| Heat shock protein Hsp90-like [Micromonospora aurantiaca ATCC
           27029]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 43/155 (27%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA               +      +E  +    ++   + DNG GM  +E+
Sbjct: 33  LRELISNASDALDKLRLESLVDKELSADTSDLHIEIEVDKDARTL-TVRDNGIGMNRDEV 91

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGE---ALPS---IGA----------VS-HLTLMSR 111
              +     S  ++    +       E   A  S   IG           V+  +TL++R
Sbjct: 92  VGLIGTIAKSGTAELLRKLR------ESADAAASQELIGQFGVGFYATFMVADRVTLLTR 145

Query: 112 PPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVR 145
               + G +   +GE   S+  V     GT V + 
Sbjct: 146 RAGQSGGTRWESAGEGTYSIEEVEDAPQGTSVTLH 180


>gi|258515651|ref|YP_003191873.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779356|gb|ACV63250.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 674

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          +     A+ EL++NS DA++ +V        +    I D+G GM+  EI 
Sbjct: 21 VTNKHSALFELVKNSYDADADKVNVSF-NILEDTLTIDDDGDGMSLNEIE 69


>gi|254882012|ref|ZP_05254722.1| heat shock protein 90 [Bacteroides sp. 4_3_47FAA]
 gi|319640980|ref|ZP_07995688.1| chaperone [Bacteroides sp. 3_1_40A]
 gi|254834805|gb|EET15114.1| heat shock protein 90 [Bacteroides sp. 4_3_47FAA]
 gi|317387425|gb|EFV68296.1| chaperone [Bacteroides sp. 3_1_40A]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 37/142 (26%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     ++  +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASKGEFKGEMGDLTIKVSL---GKDTITISDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHQEGAQ 140

Query: 118 GAQIAISGEKISSVRPVAMNPG 139
             +    G    ++  V     
Sbjct: 141 AVKWTCDGSPEFTIENVEKESR 162


>gi|240047651|ref|YP_002961039.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae HRC/581]
 gi|239985223|emb|CAT05236.1| Topoisomerase IV subunit B [Mycoplasma conjunctivae]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+ +N++D   A  ++ ++ ++     +  +I+DNG G+           + +   + H 
Sbjct: 39  EIFDNAVDEAIAGFATEIKLILKKD--NSIEISDNGRGIPVDKHKSGKTGVELVFSELHA 96

Query: 77  TSKISDDFSN 86
             K S+D   
Sbjct: 97  GGKFSNDVYK 106


>gi|237784980|ref|YP_002905685.1| two-component system sensor kinase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237757892|gb|ACR17142.1| two-component system, sensor kinase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 611

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 22  RPSIAIKELIENSLD-AE--SSRVETVIAGGGKS--------FFQITDNGFGMTSEEIPM 70
           R    +  L+ N+L  A   +  V   +                ++ DNG G+  E+   
Sbjct: 496 RLHQVLTNLMTNALKHAGPEA-AVRIALDDSTLGTSPKKKAVRIRVIDNGVGIPPEDSEH 554

Query: 71  AVQRHC 76
             +R  
Sbjct: 555 IFERFY 560


>gi|284041354|ref|YP_003391284.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283820647|gb|ADB42485.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 592

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 23  PSIAIKELIENSLD-AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
               ++EL+ N+L  A +  +   + A    +   + D+G G   E +P
Sbjct: 495 LYRVVQELLNNALKHANAHTITVQLMASDETTLISVDDDGKGGDFENMP 543


>gi|212693186|ref|ZP_03301314.1| hypothetical protein BACDOR_02696 [Bacteroides dorei DSM 17855]
 gi|237709928|ref|ZP_04540409.1| heat shock protein 90 [Bacteroides sp. 9_1_42FAA]
 gi|237725405|ref|ZP_04555886.1| heat shock protein 90 [Bacteroides sp. D4]
 gi|265753579|ref|ZP_06088934.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212664291|gb|EEB24863.1| hypothetical protein BACDOR_02696 [Bacteroides dorei DSM 17855]
 gi|229436092|gb|EEO46169.1| heat shock protein 90 [Bacteroides dorei 5_1_36/D4]
 gi|229456021|gb|EEO61742.1| heat shock protein 90 [Bacteroides sp. 9_1_42FAA]
 gi|263235293|gb|EEZ20817.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 37/142 (26%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     ++  +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASKGEFKGEMGDLTIKVSL---GKDTITISDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHQEGAQ 140

Query: 118 GAQIAISGEKISSVRPVAMNPG 139
             +    G    ++  V     
Sbjct: 141 AVKWTCDGSPEFTIENVEKESR 162


>gi|150005807|ref|YP_001300551.1| heat shock protein 90 [Bacteroides vulgatus ATCC 8482]
 gi|149934231|gb|ABR40929.1| chaperone protein [Bacteroides vulgatus ATCC 8482]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 37/142 (26%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     ++  +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASKGEFKGEMGDLTIKVSL---GKDTITISDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  DD + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKDDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHQEGAQ 140

Query: 118 GAQIAISGEKISSVRPVAMNPG 139
             +    G    ++  V     
Sbjct: 141 AVKWTCDGSPEFTIENVEKESR 162


>gi|78222272|ref|YP_384019.1| GAF sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78193527|gb|ABB31294.1| GAF sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 552

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 22/87 (25%)

Query: 6   LSEKIIN--QIAAGEIIERPSIAIKELIENSLDA------ESSRVETVIAGGGKSF---- 53
           L     N  QI   +++         L+ N+ DA      +   +    A   +      
Sbjct: 430 LPRLTANGSQI--QQVLTN-------LLINARDALGEVDRKEKVITVATALLVRDRKKWA 480

Query: 54  -FQITDNGFGMTSEEIPMAVQRHCTSK 79
              + DNG G+  E +        TSK
Sbjct: 481 VLSVRDNGTGIAPENLSKIFTPFYTSK 507


>gi|255536285|ref|YP_003096656.1| nitrogen regulation protein ntrY [Flavobacteriaceae bacterium
           3519-10]
 gi|255342481|gb|ACU08594.1| nitrogen regulation protein ntrY [Flavobacteriaceae bacterium
           3519-10]
          Length = 484

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 42  VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           +   +    K     + DNG G+  E      + + TSK
Sbjct: 404 INVDVEQRQKRVTITVQDNGTGIPEELFDRIFEPNFTSK 442


>gi|189467100|ref|ZP_03015885.1| hypothetical protein BACINT_03484 [Bacteroides intestinalis DSM
           17393]
 gi|189435364|gb|EDV04349.1| hypothetical protein BACINT_03484 [Bacteroides intestinalis DSM
           17393]
          Length = 1321

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 25  IAIKELIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
             I  +I N++    D    ++E  I    ++   QI+D G G+  E++P    R+  SK
Sbjct: 937 SVISNIITNAIKFIPDEG-GQIEVSIIQEEQTVAIQISDTGSGIRREDLPYVFIRYFQSK 995


>gi|168231322|ref|ZP_02656380.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194471991|ref|ZP_03077975.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194458355|gb|EDX47194.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205334201|gb|EDZ20965.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISISLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|145578019|gb|ABP82728.1| DNA topoisomerase II ATP-hydrolyzing DNA gyrase subunit B
          [Bacillus thuringiensis serovar tolworthi]
          Length = 632

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A         I     +  ++TDNG G+ 
Sbjct: 40 EIVDNSIDEALAGYCDETNVSIEED--NSIRVTDNGRGIP 77


>gi|145297143|ref|YP_001139984.1| two-component system sensor histidine kinase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142849915|gb|ABO88236.1| two-component system sensor histidine kinase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 30  LIENSL-------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS+       D +  ++   +   G+      +DNG G+ +E +P       TSK
Sbjct: 563 LILNSINHGFDNWD-KPKKITIKVEQEGEELLINYSDNGRGIPTEILPRIFDPFVTSK 619


>gi|116620564|ref|YP_822720.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116223726|gb|ABJ82435.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 427

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 21  ERPSIAIKELIENSLDA--ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAV 72
           +R    +  L+ NS+ A     R+             +I DNG G+ +E++    
Sbjct: 321 QRLMSVLCSLLTNSIQALTGEGRIAISTQQRESVLEVRIEDNGCGIPAEQLVRIF 375


>gi|332669832|ref|YP_004452840.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas fimi ATCC 484]
 gi|332338870|gb|AEE45453.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas fimi ATCC 484]
          Length = 443

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 26  AIKELIENSLDAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            ++ L+ N+    +S RV   +A G      + D+G G+   +     +R 
Sbjct: 346 VVRNLVGNAC-RHASARVRVTVADG---SVVVEDDGAGIDPADRERVFERF 392


>gi|322391285|ref|ZP_08064756.1| sensor histidine kinase [Streptococcus peroris ATCC 700780]
 gi|321145889|gb|EFX41279.1| sensor histidine kinase [Streptococcus peroris ATCC 700780]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 12/83 (14%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITD 58
           I+ L E    +I +    ++ S  +  L+ N+    D   +R+E +     +     + D
Sbjct: 222 IQVLPES--AKIKSH--YDKLSRILVNLLNNAFKYSDPG-TRIEVLAQLTEQELTISVKD 276

Query: 59  NGFGMTSEEIPMAVQRHC---TS 78
            G G+  E++    +R     TS
Sbjct: 277 EGQGILPEDLEKIFKRLYRVETS 299


>gi|266620559|ref|ZP_06113494.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288867852|gb|EFD00151.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 282

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 31  IENSL--------DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           +EN++        D    +V   +    K+    ++D+G G+  EE+ +       SK  
Sbjct: 166 VENAIFHGLETKPDKG--KVTIRVEMTEKNVIIIVSDDGVGIGREELELMRDSLKNSKKE 223

Query: 82  DDFSNIHTFGFRGEALPSIGAVSH 105
            D     + G RG  +  +  VS 
Sbjct: 224 TDKE-CKSPGERGNGIA-LANVSQ 245


>gi|229826860|ref|ZP_04452929.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC
          49176]
 gi|229788478|gb|EEP24592.1| hypothetical protein GCWU000182_02244 [Abiotrophia defectiva ATCC
          49176]
          Length = 636

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S +E  I     +   + D+G G+ 
Sbjct: 39 VYEIVDNSVDEALAGECSHIEVFINED--NSITVVDDGRGIP 78


>gi|229494190|ref|ZP_04387953.1| two-component sensor kinase [Rhodococcus erythropolis SK121]
 gi|229318552|gb|EEN84410.1| two-component sensor kinase [Rhodococcus erythropolis SK121]
          Length = 528

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 15/79 (18%)

Query: 30  LIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L++N++DA    ES  VE  +          + D+G GMT E +  A  R  ++K     
Sbjct: 429 LVDNAIDASRASESPWVEVTVMEEDSMMVVAVADSGPGMTPEALEKAKGRGYSTK----- 483

Query: 85  SNIHTFGFRGEALPSIGAV 103
                 G RG  L  +  V
Sbjct: 484 -----SGSRGLGLALVSQV 497


>gi|226304525|ref|YP_002764483.1| two-component histidine kinase [Rhodococcus erythropolis PR4]
 gi|226183640|dbj|BAH31744.1| putative two-component histidine kinase [Rhodococcus erythropolis
           PR4]
          Length = 528

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 15/79 (18%)

Query: 30  LIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L++N++DA    ES  VE  +          + D+G GMT E +  A  R  ++K     
Sbjct: 429 LVDNAIDASRASESPWVEVTVMEEDSMMVVAVADSGPGMTPEALEKAKGRGYSTK----- 483

Query: 85  SNIHTFGFRGEALPSIGAV 103
                 G RG  L  +  V
Sbjct: 484 -----SGSRGLGLALVSQV 497


>gi|225387786|ref|ZP_03757550.1| hypothetical protein CLOSTASPAR_01556 [Clostridium asparagiforme
           DSM 15981]
 gi|225046120|gb|EEG56366.1| hypothetical protein CLOSTASPAR_01556 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+ ++++P    R  
Sbjct: 407 INIRIKDVG-DFIQVEIEDNGKGIAAKDLPNIFDRFY 442


>gi|163736217|ref|ZP_02143636.1| periplasmic sensor signal transduction histidine kinase
           [Phaeobacter gallaeciensis BS107]
 gi|161390087|gb|EDQ14437.1| periplasmic sensor signal transduction histidine kinase
           [Phaeobacter gallaeciensis BS107]
          Length = 589

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      VE ++A G  +   + DNG G+  ++     +   T+K
Sbjct: 487 LLRNALDA--TKSVADPEVEILLAAGETATLSVRDNGMGI--KDFGSLFEPFYTTK 538


>gi|163741255|ref|ZP_02148647.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Phaeobacter gallaeciensis 2.10]
 gi|161385608|gb|EDQ09985.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Phaeobacter gallaeciensis 2.10]
          Length = 589

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 10/56 (17%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  ++      VE ++A G  +   + DNG G+  ++     +   T+K
Sbjct: 487 LLRNALDA--TKSVADPEVEILLAAGETATLSVRDNGMGI--KDFGSLFEPFYTTK 538


>gi|160941450|ref|ZP_02088786.1| hypothetical protein CLOBOL_06342 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435660|gb|EDP13427.1| hypothetical protein CLOBOL_06342 [Clostridium bolteae ATCC
           BAA-613]
          Length = 480

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+ ++++P    R  
Sbjct: 381 INIRIKDVG-DFIQVEIEDNGKGIAAKDLPNIFDRFY 416


>gi|154253688|ref|YP_001414512.1| DNA topoisomerase IV subunit B [Parvibaculum lavamentivorans DS-1]
 gi|154157638|gb|ABS64855.1| DNA topoisomerase IV, B subunit [Parvibaculum lavamentivorans DS-1]
          Length = 679

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  ++ +E  ++  G     + DNG G+  +
Sbjct: 75  EVLDNSMDEAVAGHANWIEVTVSEDG--SLTVADNGRGIPVD 114


>gi|118590589|ref|ZP_01547991.1| two-component sensor histidine kinase ExoS [Stappia aggregata IAM
           12614]
 gi|118437052|gb|EAV43691.1| two-component sensor histidine kinase ExoS [Stappia aggregata IAM
           12614]
          Length = 605

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 22  RPSIAIKELIENSLD---AESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L++N+     A  + V   ++  G+     + D+G G+ +E      +R  T
Sbjct: 486 RLGQVVSNLLDNARSFSPAGGT-VRVDLSRDGRMIKIIVDDDGPGIRAENTERIFERFYT 544


>gi|72388567|gb|AAZ67927.1| DNA gyrase subunit B [Psychrobacter frigidicola]
          Length = 731

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 10/47 (21%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFG----MTSEE 67
          E+++NS+D   A    R++ VI         ++DNG G    +  EE
Sbjct: 6  EVVDNSIDEALAGHCDRIDIVIHDD--ESVSVSDNGRGVPVDIHPEE 50


>gi|71034009|ref|XP_766646.1| DNA gyrase subunit B [Theileria parva strain Muguga]
 gi|68353603|gb|EAN34363.1| DNA gyrase subunit B, putative [Theileria parva]
          Length = 905

 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A   +++   +   G    +++DNG G+  +
Sbjct: 142 EVLDNSVDEYLAGFCNKITVSLMNDG--SVEVSDNGRGIPCD 181


>gi|313667941|ref|YP_004048225.1| topoisomerase IV subunit B [Neisseria lactamica ST-640]
 gi|313005403|emb|CBN86837.1| topoisomerase IV subunit B [Neisseria lactamica 020-06]
          Length = 661

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVHDNGRGIPVGLHPEEGVSVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|261367429|ref|ZP_05980312.1| heat shock protein HtpG [Subdoligranulum variabile DSM 15176]
 gi|282570197|gb|EFB75732.1| heat shock protein HtpG [Subdoligranulum variabile DSM 15176]
          Length = 633

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 25/120 (20%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                ++    +        ++   I+DNG GMT +E+
Sbjct: 29  LRELISNASDACDKRYFKSLTDTSIGITKEDLKIHIQPDKDSRTL-TISDNGIGMTKDEL 87

Query: 69  PMAVQRHCTS-----KISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQIA 122
              +     S     K  +   NI   G  G    S   V S +T++SR    +T  Q  
Sbjct: 88  EKNLGTIAKSGSLDFKTENQSDNIDIIGQFGVGFYSAFMVASKVTVISRAQGEDTAWQWE 147


>gi|255100049|ref|ZP_05329026.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-63q42]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHC 76
           LIEN+L  A+S  ++ V     K+   I  D+G G+  E++P   +R  
Sbjct: 406 LIENALRYAKS-EIKIVCKYNQKNIVVIIEDDGIGIKKEDLPHVFERFY 453


>gi|212550383|ref|YP_002308700.1| DNA gyrase subunit B [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
 gi|212548621|dbj|BAG83289.1| DNA gyrase subunit B [Candidatus Azobacteroides
          pseudotrichonymphae genomovar. CFP2]
          Length = 644

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I     +   + D+G G+  +
Sbjct: 38 VYEVVDNSIDETLAGYCKNIQVFINDD--NSVTVKDDGRGIPVD 79


>gi|188474271|gb|ACD49735.1| DNA gyrase subunit B [Vibrio campbellii]
          Length = 778

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   +TD+G G+      EE   A +      H
Sbjct: 26  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLH 83

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  + 
Sbjct: 84  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIG 142

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R      P+   F  + +   +++   +R ++     VS      +    K
Sbjct: 143 ETDQTGTQIRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-VDEREADK 196

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 197 SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTN 256

Query: 256 GRTVQD 261
               +D
Sbjct: 257 NIPQRD 262


>gi|167568606|ref|ZP_02361480.1| C4-dicarboxylate transport sensor protein [Burkholderia
           oklahomensis C6786]
          Length = 677

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 561 RLEQVLINLLGNALDAVAAVAAPRIDVTIGATAATLSIVVRDNGPGIAPESLARLFEPFF 620

Query: 77  TSK 79
           T+K
Sbjct: 621 TTK 623


>gi|163735703|ref|ZP_02143133.1| sensory histidine kinase [Roseobacter litoralis Och 149]
 gi|161390956|gb|EDQ15295.1| sensory histidine kinase [Roseobacter litoralis Och 149]
          Length = 136

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 23 PSIAIKELIENSLDA----ESSRVETVIAGG-GKSFFQITDNGFGMT 64
              +KELI+N+++A     S+R++ ++     + +FQI DNG GM 
Sbjct: 29 LFAVLKELIQNAINAVETPCSARIDVLVTQYKNRLYFQIADNGPGMP 75


>gi|138895378|ref|YP_001125831.1| sporulation kinase B-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266891|gb|ABO67086.1| sporulation kinase B-like protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 31  IENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++N+++A     + +V   I   G+   +I D G GMT E++    + + T+K
Sbjct: 322 MKNAIEAMPNGGTLQVYVSIDD-GRVLIRIADTGVGMTKEQLERLGKPYFTTK 373


>gi|313672477|ref|YP_004050588.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939233|gb|ADR18425.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 609

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 30  LIENSLDAESSR--VETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA +    +    +   G       DNG G+  E I        T+K
Sbjct: 515 LMSNAIDAITDNGVITIDSLEKDGIKTIIFKDNGTGIKPEHIDKIFDPFFTTK 567


>gi|307296787|ref|ZP_07576605.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
 gi|306877700|gb|EFN08926.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
          Length = 524

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 30  LIENSLDAESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L EN+  A +SR  +   +     ++    D+G G+   +         TS
Sbjct: 431 LAENARQAGASRLDIGVTVRDD-AAWIDCADDGPGIPPGDRQRVFDLFFTS 480


>gi|304392752|ref|ZP_07374692.1| sensor protein ChvG [Ahrensia sp. R2A130]
 gi|303295382|gb|EFL89742.1| sensor protein ChvG [Ahrensia sp. R2A130]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 22  RPSIAIKELIENS---LDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+EN+   + AE  RV   ++  G      +TDNG G+  +      +R  T
Sbjct: 516 RLGQVLANLVENARSFVPAEGGRVTMTLSRTGDDAVVTVTDNGPGIPPDNTGRIFERFYT 575


>gi|303247362|ref|ZP_07333635.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302491276|gb|EFL51165.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 458

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 8   EKIINQIAAGEII--ER--PSIAIKELIENSLDAES---SRVETVI--AGGGKSFFQITD 58
           + I+ +IA+G I+  +R   +     L+EN++       +++   +     G     ++D
Sbjct: 336 QTIVTRIASGAIVRGDRALLTQMFANLLENAI-RHCPEGTQIALSVSREPAGI-LASVSD 393

Query: 59  NGFGMTSEEIPMAVQRHC 76
           NG G+  EE     +R  
Sbjct: 394 NGPGIPPEERENVFRRFY 411


>gi|289624367|ref|ZP_06457321.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646634|ref|ZP_06477977.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868649|gb|EGH03358.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 998

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 15  AAGEII----ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDN 59
           A G +I    ER    +  L+ N++           DA +S  E +          ++D+
Sbjct: 645 AQGLVINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFK--------VSDD 696

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+ +E +P   QR+ + K
Sbjct: 697 GIGIPAEHLPYIFQRYWSVK 716


>gi|283852154|ref|ZP_06369427.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572380|gb|EFC20367.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 306

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 25  IAIKELIENSLDAESS----RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
             I  L+ N+L   ++     +        K+   ++ D G G+  E +        T+K
Sbjct: 207 QVILNLLTNAL--AATPKGGTITVSTRRDEKTICIEVRDTGCGIPPENMQKIFNPFFTTK 264


>gi|257388769|ref|YP_003178542.1| DNA gyrase subunit beta [Halomicrobium mukohataei DSM 12286]
 gi|257171076|gb|ACV48835.1| DNA gyrase, B subunit [Halomicrobium mukohataei DSM 12286]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I         ++D+G G+  +
Sbjct: 41 VYEVVDNSIDEALAGHCDEITVTIHED--DSVSVSDDGRGIPVD 82


>gi|257783820|ref|YP_003179037.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469]
 gi|257472327|gb|ACV50446.1| DNA gyrase, B subunit [Atopobium parvulum DSM 20469]
          Length = 647

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S+++  I     +   + DNG G+  +
Sbjct: 43 EIVDNSVDEAMAGYCSKIKVTIHPD--NSISVEDNGRGIPVD 82


>gi|160878167|ref|YP_001557135.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg]
 gi|160426833|gb|ABX40396.1| DNA gyrase, B subunit [Clostridium phytofermentans ISDg]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + ++  I     +   + DNG G+  E
Sbjct: 39 VYEIVDNAVDEALAGYCNTIDVSINPD--NSITVIDNGRGIPVE 80


>gi|59712951|ref|YP_205727.1| two-component sensor protein [Vibrio fischeri ES114]
 gi|59481052|gb|AAW86839.1| sensory histidine kinase in two-component regulatory system with
           CpxR [Vibrio fischeri ES114]
          Length = 462

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
            A++ +I N++   +  V   I   GK+    + DNG G+  +E+    +   
Sbjct: 360 SAVENVIRNAIKYGNDVVTVNINDTGKTLTIIVDDNGEGVPEDELQDIFKPFY 412


>gi|260062006|ref|YP_003195086.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501]
 gi|88783568|gb|EAR14739.1| DNA gyrase subunit B [Robiginitalea biformata HTCC2501]
          Length = 648

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A       +   I     +   + DNG G+  +
Sbjct: 44 VYEVVDNSIDEAMGGHCDTISVTINED--NSITVEDNGRGIPVD 85


>gi|332829510|gb|EGK02159.1| chaperone htpG [Dysgonomonas gadei ATCC BAA-286]
          Length = 629

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 37/128 (28%)

Query: 27  IKELIENSLDAE------SS-----------RVETVI-AGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N++DA       +S            V+  I    G     I+DNG GMT+EEI
Sbjct: 30  LRELVSNAVDASQKLKTYASLGEFKGELGNLSVKVKIDKDNGT--LTISDNGIGMTNEEI 87

Query: 69  PMAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNN 116
              + +   S       K   D ++I      GF      S   VS  + +++R   +  
Sbjct: 88  DKYINQIAFSSANEFLDKYKKDANSIIGHFGLGF-----YSSFMVSKKVEIITRSFKEGA 142

Query: 117 TGAQIAIS 124
              + +  
Sbjct: 143 EAVKWSCD 150


>gi|323698736|ref|ZP_08110648.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323458668|gb|EGB14533.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 558

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 30  LIENSLDA-----ESS--RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++ A      +   R+E V     ++     +TDNG G+  E +        T+K
Sbjct: 455 LLNNAIHAVVDRHGAKGGRIEVVARRDDRNQAEITVTDNGSGINQESLSKIFMPFFTTK 513


>gi|319957711|ref|YP_004168974.1| DNA gyrase subunit b [Nitratifractor salsuginis DSM 16511]
 gi|319420115|gb|ADV47225.1| DNA gyrase subunit B [Nitratifractor salsuginis DSM 16511]
          Length = 771

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 13/56 (23%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          E+++NS+D   A    +++  + G G +  +  DNG G+   E       H T KI
Sbjct: 40 EVVDNSIDEAMAGYCDKIKVTLTGEGSAIIE--DNGRGIPVAE-------HPTEKI 86


>gi|317504321|ref|ZP_07962308.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
 gi|315664572|gb|EFV04252.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella salivae
           DSM 15606]
          Length = 660

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 64/246 (26%), Gaps = 35/246 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 60  LKEVVDNSIDEFKMKAG-DRIEIEVEDN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 116

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S               +        
Sbjct: 117 DSKAFK-KSVGLNGVGIKAVNALSS-----HFEVKSFRDGKVRELTFEKGVKLNDVTLET 170

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +             +  K      +++  ++R        ++          +
Sbjct: 171 DDENGTFIYFE-------PDKSLFKDYSFHNDIVETMLRNYTYLNSGLTIMYNGRRIKSR 223

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           +    +   +   +    I  ++GED        N+   E                    
Sbjct: 224 NGLADLLNDTMTNDGLYPIVHIVGEDIEIAFTHTNQYGEEYHS---FVNGQHTTQGGTHQ 280

Query: 251 YVFING 256
             F   
Sbjct: 281 SAFKEH 286


>gi|304391681|ref|ZP_07373623.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130]
 gi|303295910|gb|EFL90268.1| DNA topoisomerase IV, B subunit [Ahrensia sp. R2A130]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S +E  +   G  +  ITDNG G+  +
Sbjct: 78  EVIDNSMDEAVAGHASWIEVELDAEG--YLTITDNGRGIPVD 117


>gi|301052646|ref|YP_003790857.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374815|gb|ADK03719.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 464

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 6   LSEKIINQIAAGE-IIERPSIAIKELIENSL---DAESSRVETVIAGG-GKSFFQITDNG 60
           L E+II  I A + +I+R   AI  L+ N+L   D   + ++  I    G +   I DNG
Sbjct: 346 LQEEII--IKADQGLIQR---AIVNLLNNALIHTD-NKTLIQVCIKQTIGYTIVTIEDNG 399

Query: 61  FGMTSEEIPMAVQRH 75
            G+   ++P    R+
Sbjct: 400 EGINKSDLPHIFDRY 414


>gi|302830013|ref|XP_002946573.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
          nagariensis]
 gi|300268319|gb|EFJ52500.1| hypothetical protein VOLCADRAFT_79115 [Volvox carteri f.
          nagariensis]
          Length = 676

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++RVE  +      +  +TD+G G+  +
Sbjct: 51 EVVDNSVDEVQAGHATRVEVQVDLSS-GWVVVTDDGRGIPVD 91


>gi|298487112|ref|ZP_07005162.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158355|gb|EFH99425.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 1003

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 15  AAGEII----ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDN 59
           A G +I    ER    +  L+ N++           DA +S  E +          ++D+
Sbjct: 650 AQGLVINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFK--------VSDD 701

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+ +E +P   QR+ + K
Sbjct: 702 GIGIPAEHLPYIFQRYWSVK 721


>gi|237786492|ref|YP_002907197.1| two-component system sensor kinase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237759404|gb|ACR18654.1| two-component system, sensor kinase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVVDDGDGIPPDQLRYIFERFY 315


>gi|284036378|ref|YP_003386308.1| ATP-binding region ATPase domain protein [Spirosoma linguale DSM
           74]
 gi|283815671|gb|ADB37509.1| ATP-binding region ATPase domain protein [Spirosoma linguale DSM
           74]
          Length = 610

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 83/289 (28%), Gaps = 54/289 (18%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                    +V   +    K+   I+DNG GMT++EI 
Sbjct: 34  LRELVSNAVDATQKLNQLASFGEFGGELGELKVTVSLDEEAKT-ITISDNGIGMTADEIK 92

Query: 70  MAVQRHCTS-------KI---SDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQ 114
             + +   S       K    +DD   I      GF      S   V+  + ++++    
Sbjct: 93  KYINQIAFSGATDFLEKYKDKTDDKGQIIGHFGLGF-----YSAFMVAEKVDIVTKSYRD 147

Query: 115 NNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDL----FFTIPARLNFLKSEQVETNLIT 169
                +    G     + P    + GT + +        F   +RL  +  +      + 
Sbjct: 148 GAEAVRWTCDGSTEFELTPTERADRGTDIILHIAPDSEEFLSKSRLQGILDKYARFLPVA 207

Query: 170 DVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSN 229
                  +      +T S             T+ ++     ++                 
Sbjct: 208 VEFDEKVVNNTNPIWTKS---------PADLTDEDYKNFYRELYPMGEEPLFWIHLNVDY 258

Query: 230 EITLQGYTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL 278
              L G    P        Q          +  FI   ++    + + +
Sbjct: 259 PFNLTGILYFPRIKNELRFQREKI--QLYSRQVFITDEVKDVVPDFLMM 305


>gi|255305936|ref|ZP_05350108.1| two-component system sensor histidine kinase [Clostridium difficile
           ATCC 43255]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHC 76
           LIEN+L  A+S  ++ V     K+   I  D+G G+  E++P   +R  
Sbjct: 406 LIENALRYAKS-EIKIVCKYNQKNIVVIIEDDGIGIKKEDLPHVFERFY 453


>gi|224134060|ref|XP_002321726.1| predicted protein [Populus trichocarpa]
 gi|222868722|gb|EEF05853.1| predicted protein [Populus trichocarpa]
          Length = 455

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVIAGGGKSFFQ---ITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD     ++ V   +    K   +   I DNG GM  +++   +    +  SK+
Sbjct: 52  ELMDNALDEFGNGATFVNIDMVESKKDRSRMLLIEDNGGGMDPDKMRQCMSLGYSAKSKV 111

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 112 AN---TIGQYG 119


>gi|167561377|ref|ZP_02354293.1| C4-dicarboxylate transport sensor protein [Burkholderia
           oklahomensis EO147]
          Length = 677

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++    R++  I     +    + DNG G+  E +    +   
Sbjct: 561 RLEQVLINLLGNALDAVAAVAAPRIDVTIGATAATLSIVVRDNGPGIAPESLARLFEPFF 620

Query: 77  TSK 79
           T+K
Sbjct: 621 TTK 623


>gi|172064230|ref|YP_001811881.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MC40-6]
 gi|171996747|gb|ACB67665.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MC40-6]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 22/96 (22%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI--- 46
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+       
Sbjct: 487 RIRDEGVQLD---VN-IAPGTTVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIEAAKV 542

Query: 47  ---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                 G+  F + D+G G+  + +P   +   T+K
Sbjct: 543 DDEDEAGRVRFTVADSGAGIAPDVLPHLFEPFVTTK 578


>gi|148654224|ref|YP_001274429.1| CheA signal transduction histidine kinase [Roseiflexus sp. RS-1]
 gi|148566334|gb|ABQ88479.1| CheA signal transduction histidine kinase [Roseiflexus sp. RS-1]
          Length = 742

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 28/84 (33%)

Query: 16  AGE-------IIERPSIAIKELIENSLDAESSRVE---------------TVIAG---GG 50
           AGE       +IE  +  +  LI N++D     +E                 IA    GG
Sbjct: 312 AGETTELDRKVIEALADPMVHLIRNAIDHG---IEPVDERERLGKPRQGVIEIAAQAHGG 368

Query: 51  KSFFQITDNGFGMTSEEIPMAVQR 74
           +    + D+G GM  +++     R
Sbjct: 369 RVLITVRDDGRGMDPQQLRETAVR 392


>gi|87306803|ref|ZP_01088949.1| DNA topoisomerase VI subunit B [Blastopirellula marina DSM 3645]
 gi|87290176|gb|EAQ82064.1| DNA topoisomerase VI subunit B [Blastopirellula marina DSM 3645]
          Length = 687

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAV 72
           IKE ++NSLDA  E+     +   +   G + ++  I DNG G+  ++IP+  
Sbjct: 51  IKEAVDNSLDACEEAGIVPEIWVHVEQTGVNRYKAGIQDNGPGIMKKQIPLIF 103


>gi|331083523|ref|ZP_08332635.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404216|gb|EGG83764.1| DNA gyrase subunit B [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     ++  I     +   + DNG G+ 
Sbjct: 43 VYEIVDNAVDEALAGYCDTIDVAINED--NSITVIDNGRGIP 82


>gi|325268376|ref|ZP_08135008.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
 gi|324989230|gb|EGC21181.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Prevotella
           multiformis DSM 16608]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 72/263 (27%), Gaps = 34/263 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMNAG-DRIEIDVEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S                +       
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVKSYRDGRVRELTFGKGNIQNDRTAKS 166

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           +   GT +                K+     +++ +++R        ++          +
Sbjct: 167 SDESGTYIYFE-------PDNTLFKNYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSR 219

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G           A 
Sbjct: 220 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 279

Query: 249 QFYVFINGRTVQDKFILSTIRTA 271
           + ++    +    K+    IR  
Sbjct: 280 KEHIARTIKEFFGKYEYGDIRNG 302


>gi|325265438|ref|ZP_08132161.1| DNA gyrase, B subunit [Clostridium sp. D5]
 gi|324029296|gb|EGB90588.1| DNA gyrase, B subunit [Clostridium sp. D5]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +   I  G  +   + DNG G+ 
Sbjct: 46 VYEIVDNAVDEALAGYCDTIFVSINKG--NSITVIDNGRGIP 85


>gi|312959227|ref|ZP_07773745.1| sensor histidine kinase [Pseudomonas fluorescens WH6]
 gi|311286487|gb|EFQ65050.1| sensor histidine kinase [Pseudomonas fluorescens WH6]
          Length = 633

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             SS       G GK   Q+ DNG G+ +E  
Sbjct: 519 TRLEQILVNLIGNALDAMQAQPAPELWLEGSS-------GEGKYRLQVRDNGHGIDAETR 571

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 572 KHLFEPFFTTK 582


>gi|307825353|ref|ZP_07655572.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96]
 gi|307733528|gb|EFO04386.1| DNA gyrase, B subunit [Methylobacter tundripaludum SV96]
          Length = 821

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A     V  +I   G     ++D+G G+  +
Sbjct: 62  EVVDNSIDEALAGYCKEVRVIIHSNG--SVSVSDDGRGIPVD 101


>gi|307324404|ref|ZP_07603612.1| peptidase C14 caspase catalytic subunit p20 [Streptomyces
           violaceusniger Tu 4113]
 gi|306890135|gb|EFN21113.1| peptidase C14 caspase catalytic subunit p20 [Streptomyces
           violaceusniger Tu 4113]
          Length = 1694

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 20/87 (22%)

Query: 6   LSEKIINQIAAGEIIERPSI-AIKELIENSLDA----ESSRV------------ETVIAG 48
           L    +  + AGE +      A++EL +N+LDA    ++                  I  
Sbjct: 594 LDGTRVRDLLAGEQLYSDRSLAVRELYQNALDACNVRKARESFRPGEGEDTWQGRIEIRQ 653

Query: 49  GGKSFFQ---ITDNGFGMTSEEIPMAV 72
           G     +     DNG GM   E+  A 
Sbjct: 654 GSVGSVRFVECIDNGSGMGRGELLHAF 680


>gi|303246319|ref|ZP_07332599.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302492382|gb|EFL52254.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 822

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 23  PSIAIKELIENSLDAES---SRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHC 76
               +  L+ N+LDA S     V      G         ++DNG G+  +++        
Sbjct: 710 LEQVLSNLLLNALDAVSPETGEVRIAARPGPDDDSVSILVSDNGPGIPPQDLTRIFDPFF 769

Query: 77  TSK 79
           T+K
Sbjct: 770 TTK 772


>gi|266622188|ref|ZP_06115123.1| signal transduction histidine kinase [Clostridium hathewayi DSM
           13479]
 gi|288866092|gb|EFC98390.1| signal transduction histidine kinase [Clostridium hathewayi DSM
           13479]
          Length = 679

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
             + DNG G+  +++    +   T+K
Sbjct: 397 ITVRDNGCGIEKDDLKRISEPFYTTK 422


>gi|262195898|ref|YP_003267107.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
           14365]
 gi|262079245|gb|ACY15214.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 746

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 41  RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++        G+    + DNG GMT + +    + + ++K
Sbjct: 660 RIDIETCTTNDGRVLITVRDNGVGMTPDVLARVFEPYFSTK 700


>gi|237794338|ref|YP_002861890.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262926|gb|ACQ53959.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G++ E++P   +R   S
Sbjct: 382 VKVSLSKGEDKIFIKVEDNGEGISKEDLPHIFERFYRS 419


>gi|194293014|ref|YP_002008921.1| sensory histidine kinase in two-component regulatory system; signal
           peptide [Cupriavidus taiwanensis LMG 19424]
 gi|193226918|emb|CAQ72869.1| Putative sensory histidine kinase in two-component regulatory
           system; signal peptide [Cupriavidus taiwanensis LMG
           19424]
          Length = 441

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 30  LIENS---LDAESSRVETVIAGG--GKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L++N+   + A   R++  +  G  G+S    ++DNG G+ +EE      R  
Sbjct: 345 LVDNALAYIPAG-GRIDVAVRRGSDGRSVELVVSDNGPGIPAEERARVFDRFY 396


>gi|183599543|ref|ZP_02961036.1| hypothetical protein PROSTU_03023 [Providencia stuartii ATCC 25827]
 gi|188021790|gb|EDU59830.1| hypothetical protein PROSTU_03023 [Providencia stuartii ATCC 25827]
          Length = 453

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 30  LIENSL---DAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   D +  +++  I      G +   + DNG G+  E   +   R  
Sbjct: 357 LLENAIKYSD-KKGKIKITIRDLSPFGAT-ITVQDNGRGIPEESRQLIFSRFY 407


>gi|116668574|ref|YP_829507.1| DNA gyrase subunit B [Arthrobacter sp. FB24]
 gi|116608683|gb|ABK01407.1| DNA gyrase subunit B [Arthrobacter sp. FB24]
          Length = 696

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A   + +E V+   GG     + D+G G+  +
Sbjct: 67  VYEVVDNSVDEALAGYCTHIEIVLQADGGVK---VVDDGRGIPVD 108


>gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681]
 gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681]
          Length = 609

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 19  IIER--PSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           +I+R      +  L+ N+L    D  S R+E      G     + D G G+  +++    
Sbjct: 489 VIDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDRIF 548

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           +R        D +     G  G  L SI 
Sbjct: 549 ERFY----RVDKARSRNMGGTGLGL-SIA 572


>gi|302870737|ref|YP_003839373.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573596|gb|ADL41387.1| DNA gyrase, B subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E +I     +   + D+G G+  +
Sbjct: 46 VYEIVDNAIDEAMAGYCKNIEVIIHKD--NSVTVIDDGRGIPVD 87


>gi|290955366|ref|YP_003486548.1| two component system histidine kinase [Streptomyces scabiei 87.22]
 gi|260644892|emb|CBG67978.1| putative two component system histidine kinase [Streptomyces
           scabiei 87.22]
          Length = 614

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 22  RPSIAIKELIENSLDAESSR---------VETVIA-GGGKSFFQITDNGFGMTSEEIPMA 71
             +  +  L++N++DA ++          VE  +          + D+G G+  E     
Sbjct: 492 DVATVVGNLVDNAVDAAATTTLPDGHEAWVEVELRQDASSVEIVVRDSGPGVAPELAREV 551

Query: 72  VQRHCTSK 79
                T+K
Sbjct: 552 FAHGFTTK 559


>gi|284037876|ref|YP_003387806.1| DNA gyrase subunit beta [Spirosoma linguale DSM 74]
 gi|283817169|gb|ADB39007.1| DNA gyrase, B subunit [Spirosoma linguale DSM 74]
          Length = 666

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A    ++   I     +   + DNG G+ 
Sbjct: 55 EVVDNSIDEALAGYCDKISVTINPD--NSITVQDNGRGIP 92


>gi|160945318|ref|ZP_02092544.1| hypothetical protein FAEPRAM212_02838 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443049|gb|EDP20054.1| hypothetical protein FAEPRAM212_02838 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105479|emb|CBL03023.1| Molecular chaperone, HSP90 family [Faecalibacterium prausnitzii
           SL3/3]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 26/145 (17%)

Query: 27  IKELIENSLDA------ES---SRV-------ETVIAGGGKSFF-QITDNGFGMTSEEIP 69
           ++ELI N+ DA      +S   + V         +I    ++    + DNG GMT EE+ 
Sbjct: 29  LRELISNASDAIDKLYYKSLTDTSVGMNKGDFRILITRDKENRILTVEDNGIGMTKEELE 88

Query: 70  --MAVQRHCTS----KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIA 122
             +    H  S    K + D  NI   G  G    S   V+  LT++S+   ++   Q  
Sbjct: 89  QNLGTIAHSGSLDFKKDNKD-ENIDIIGQFGVGFYSAFMVADKLTVISKAYGSDEAWQWE 147

Query: 123 ISGEKISSVRPVAMNP-GTIVEVRD 146
            SG     + P   +  GT V +  
Sbjct: 148 SSGVDGYEMTPAQKDTVGTQVILHI 172


>gi|126698598|ref|YP_001087495.1| two-component system sensor histidine kinase [Clostridium difficile
           630]
 gi|115250035|emb|CAJ67855.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 463

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHC 76
           LIEN+L  A+S  ++ V     K+   I  D+G G+  E++P   +R  
Sbjct: 374 LIENALRYAKS-EIKIVCKYNQKNIVVIIEDDGIGIKKEDLPHVFERFY 421


>gi|221133993|ref|ZP_03560298.1| DNA topoisomerase IV subunit B [Glaciecola sp. HTCC2999]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S ++ ++        ++ D+G GM  +
Sbjct: 30 TRPNHLSQEVIDNSVDEALAGHASSIKVILHDD--QSLEVIDDGRGMPVD 77


>gi|254974565|ref|ZP_05271037.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255091954|ref|ZP_05321432.1| two-component system sensor histidine kinase [Clostridium difficile
           CIP 107932]
 gi|255313688|ref|ZP_05355271.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255516372|ref|ZP_05384048.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255649472|ref|ZP_05396374.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260682638|ref|YP_003213923.1| two-component system sensor histidine kinase [Clostridium difficile
           CD196]
 gi|260686238|ref|YP_003217371.1| two-component system sensor histidine kinase [Clostridium difficile
           R20291]
 gi|306519549|ref|ZP_07405896.1| two-component system sensor histidine kinase [Clostridium difficile
           QCD-32g58]
 gi|260208801|emb|CBA61694.1| two-component system sensor histidine kinase [Clostridium difficile
           CD196]
 gi|260212254|emb|CBE02983.1| two-component system sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 495

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHC 76
           LIEN+L  A+S  ++ V     K+   I  D+G G+  E++P   +R  
Sbjct: 406 LIENALRYAKS-EIKIVCKYNQKNIVVIIEDDGIGIKKEDLPHVFERFY 453


>gi|24371611|ref|NP_715653.1| DNA gyrase, B subunit [Shewanella oneidensis MR-1]
 gi|24345361|gb|AAN53098.1|AE015452_11 DNA gyrase, B subunit [Shewanella oneidensis MR-1]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 78/249 (31%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I   G     + D+G G+      EE   A +      H
Sbjct: 43  EVVDNSIDEALAGHCTDITITIHVDG--SVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  D+   + + G  G  +  + A+S    LT+           Q    G   + ++
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLQLTI---RRDGKVHEQFYTHGVPDAPIK 156

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            +     T  E+R      P+      + +    ++   +R ++     V       + N
Sbjct: 157 EIGDATKTGTEIRF----WPSEQT-FSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDN 211

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           + +  F    G     +  +       N    +                +N G     + 
Sbjct: 212 KNE--FFKYEGGISAFVDYLNRNKTPVNKDVFHFMQERDDGITVEVAMQWNDGYQENIFC 269

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 270 FTNNIPQRD 278


>gi|329936871|ref|ZP_08286550.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329303796|gb|EGG47680.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 22  RPSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    ++ L+ N++    A  + V   I    K    ++ D+G G+ ++++P   +R 
Sbjct: 366 RLQQVVRNLVGNAVQHTPAR-TGVLVEITLDRKDVRLRVVDDGPGIPAQDLPRIFERF 422


>gi|330470749|ref|YP_004408492.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813720|gb|AEB47892.1| ATP-binding region ATPase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 416

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 16/76 (21%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAE-----SSRVETVIAGGGKS-FFQITDN 59
           L   + ++       +  +  + EL+ N   A       S +E   A  G++   Q++D 
Sbjct: 300 LPRAVGHR-------QSLATVLTELVTN---AGKYSPPGSPIEISAAADGRTVSLQVSDR 349

Query: 60  GFGMTSEEIPMAVQRH 75
           G G+  E +  A +R 
Sbjct: 350 GIGIRPEHVERAFERF 365


>gi|302669379|ref|YP_003829339.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316]
 gi|302393852|gb|ADL32757.1| DNA gyrase subunit B GyrB [Butyrivibrio proteoclasticus B316]
          Length = 650

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  I     +   + DNG G+  +
Sbjct: 46 VYEIVDNSVDEALAGFCDHIEVTINED--NTIIVQDNGRGIPVD 87


>gi|302829771|ref|XP_002946452.1| hypothetical protein VOLCADRAFT_86759 [Volvox carteri f.
           nagariensis]
 gi|300268198|gb|EFJ52379.1| hypothetical protein VOLCADRAFT_86759 [Volvox carteri f.
           nagariensis]
          Length = 2576

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 18/58 (31%)

Query: 29  ELIENSL---------D---AESSR---VETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL         D   A + R   +   +     G     ++ DNG GM+S+E+
Sbjct: 110 ELIDNSLRATKAQLPTDPSVASAERPRMIVVSLVVNERGTAGLIRVQDNGRGMSSKEL 167


>gi|225010581|ref|ZP_03701052.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C]
 gi|225005410|gb|EEG43361.1| DNA gyrase, B subunit [Flavobacteria bacterium MS024-3C]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D A       +   I     +   +TDNG G+ 
Sbjct: 44 VYEVVDNSIDEAMGGHCDTITIDINED--NSISVTDNGRGIP 83


>gi|28376979|ref|NP_783871.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
 gi|254555174|ref|YP_003061591.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
 gi|300769110|ref|ZP_07078999.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          plantarum subsp. plantarum ATCC 14917]
 gi|308179196|ref|YP_003923324.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|28269810|emb|CAD62707.1| DNA gyrase, B subunit [Lactobacillus plantarum WCFS1]
 gi|254044101|gb|ACT60894.1| DNA gyrase, B subunit [Lactobacillus plantarum JDM1]
 gi|300493350|gb|EFK28529.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          plantarum subsp. plantarum ATCC 14917]
 gi|308044687|gb|ADN97230.1| DNA gyrase, B subunit [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 648

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  ++ +   +     +   +TDNG G+  +
Sbjct: 52 EIVDNGIDEALAGFANVIHVTVEKD--NSITVTDNGRGIPVD 91


>gi|89096379|ref|ZP_01169272.1| sporulation kinase B [Bacillus sp. NRRL B-14911]
 gi|89089233|gb|EAR68341.1| sporulation kinase B [Bacillus sp. NRRL B-14911]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 31  IENSLDAESS----RVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N++  ES+    +++  I     S     ++ DNG GMT E++        T+K
Sbjct: 309 IKNAI--ESTEKDGQIQITIQPNQLSNTVSLKVIDNGIGMTEEQLKKIGLPFYTTK 362


>gi|331086561|ref|ZP_08335639.1| hypothetical protein HMPREF0987_01942 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410394|gb|EGG89826.1| hypothetical protein HMPREF0987_01942 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 498

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 31  IENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           + NSL   D + +R+   +   G  F Q+   DNG G+ ++++P    R        D S
Sbjct: 392 VTNSLKYMDKKRARINLRVKDVG-DFIQVELEDNGKGIAAKDLPNIFDRFY----RTDAS 446

Query: 86  NIHTFGFRGEALPSI 100
              + G  G  L SI
Sbjct: 447 RNSSKGGSGIGL-SI 460


>gi|325662838|ref|ZP_08151407.1| hypothetical protein HMPREF0490_02147 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470890|gb|EGC74119.1| hypothetical protein HMPREF0490_02147 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 498

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 31  IENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           + NSL   D + +R+   +   G  F Q+   DNG G+ ++++P    R        D S
Sbjct: 392 VTNSLKYMDKKRARINLRVKDVG-DFIQVELEDNGKGIAAKDLPNIFDRFY----RTDAS 446

Query: 86  NIHTFGFRGEALPSI 100
              + G  G  L SI
Sbjct: 447 RNSSKGGSGIGL-SI 460


>gi|300689717|ref|YP_003750712.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
          solanacearum PSI07]
 gi|299076777|emb|CBJ49384.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
          solanacearum PSI07]
          Length = 838

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   +TDNG G+ 
Sbjct: 50 EVLDNSIDEALAGHCTEIHVTIHTD--NSISVTDNGRGIP 87


>gi|284929622|ref|YP_003422144.1| molecular chaperone of HSP90 family [cyanobacterium UCYN-A]
 gi|284810066|gb|ADB95763.1| molecular chaperone of HSP90 family [cyanobacterium UCYN-A]
          Length = 657

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 78/546 (14%), Positives = 153/546 (28%), Gaps = 67/546 (12%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N++DA S                   +   +    KS   ITDNG GM +EEI 
Sbjct: 32  LRELISNAVDALSKLKMASLAGEVSCNVPEPEITITVDKTDKSL-SITDNGIGMNTEEIK 90

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTL--MSRPPQNN 116
             + +   S       K   D + I      GF      S   VS  + +  +S    + 
Sbjct: 91  KYINQVAFSSAEEFVKKYEKDANEIIGHFGLGF-----YSAFMVSKKVEIDTLSYKEDSK 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                                 GT +++  +           + E +E   I  +++  +
Sbjct: 146 PIHWSCDGSPSFELSESNRTQIGTTIKLTLM---------DEEHEYLEPERIRQLVKTYS 196

Query: 177 IAYP-KVSFTFSTIKSNRYKMN---FQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
              P  + F  + I   +          T+ ++ E    +                    
Sbjct: 197 DFVPIPIRFEDTIINKQKALWKESAHNLTDNDYLEFYRYLYPYQEDPLLWIHLNTDYPYL 256

Query: 233 LQGYTGIPTF---NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLE 289
           L G    P        +     +F N   V D            + +   R  +    + 
Sbjct: 257 LNGILYFPKLRPDVDVSKGHIKLFCNQVFVSD-----HCEEIIPDFLMPLRGVIDSPDIP 311

Query: 290 IDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDN 349
           ++  +  +  H     I       I + + +  +    +       V +     S   + 
Sbjct: 312 LNVSRSALTNHRTVRSIANHIAKKIADRLKEIYENNTEEYVKCWQDVGTFVKYGSLKDEK 371

Query: 350 APKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIA 409
             K          T+T  +    + ++        D  +   +    +    T       
Sbjct: 372 FKKHVEDILIYKTTHTANESETPQVQVEEKGDAWKDVASEKNELSYEKIGYTTLSAYMNR 431

Query: 410 CAQIHQNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGE 469
             +IH+N I   T   +        +E    E +  D           L  E  ++    
Sbjct: 432 NKEIHENRIFYCTDPDVQATHI-RLYENQGLEILYMDSFIDTNYFIPFLEKEYPEV--KF 488

Query: 470 CALIMEHDEDLHRLGIKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDEIIDSSTTYTL 529
             +  E D+ L +     E   PN+   R        + I +L    ++    +  T +L
Sbjct: 489 SRVDSELDDTLLQNNKVDEIVDPNSQKTRS-------EKIKELFEASLNNSKVNIKTQSL 541

Query: 530 QDRIEN 535
           +  +  
Sbjct: 542 KSDLSE 547


>gi|261749362|ref|YP_003257047.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana)
          str. BPLAN]
 gi|261497454|gb|ACX83904.1| DNA gyrase subunit B [Blattabacterium sp. (Periplaneta americana)
          str. BPLAN]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A   +++   I   G  F  + DNG G+  +
Sbjct: 42 VCEVIDNSVDESLAGYCNKIWVTIHKNG--FITVLDNGRGIPID 83


>gi|260583815|ref|ZP_05851563.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC
          700633]
 gi|260158441|gb|EEW93509.1| DNA topoisomerase IV, B subunit [Granulicatella elegans ATCC
          700633]
          Length = 682

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   +  +S+++  I   G     + DNG GM 
Sbjct: 44 EIVDNAVDEALSGYASKIDVTIHKDG--SLSVRDNGRGMP 81


>gi|256830419|ref|YP_003159147.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579595|gb|ACU90731.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 812

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 23  PSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
               +  L+ N+LDA         +   +A   G+    + DNG G+++ + P       
Sbjct: 696 LEQVLSNLVINALDAVGEEDG--EIVVRVAPMDGRVAIVVEDNGPGVSAADAPHIFDPFY 753

Query: 77  TSK 79
           ++K
Sbjct: 754 STK 756


>gi|289578040|ref|YP_003476667.1| histidine kinase [Thermoanaerobacter italicus Ab9]
 gi|289527753|gb|ADD02105.1| histidine kinase [Thermoanaerobacter italicus Ab9]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 30 LIENSLDAESSRVETVIA-GGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
          L +NS+ A +  +   I     K   ++   D+G GM  E +        T
Sbjct: 11 LAQNSIRARAKNICVEINIDTSKDMLKVSIEDDGCGMKEELLKKVTDPFVT 61


>gi|229592620|ref|YP_002874739.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229364486|emb|CAY52325.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 984

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R +  +  L+ N+ DA     + RV+T +         + D G G+    +    +   
Sbjct: 868 QRLAQVLINLLSNARDATPAGGAVRVKTEVFEHTVDLI-VEDEGSGIPQNIMDRLFEPFF 926

Query: 77  TSK 79
           T+K
Sbjct: 927 TTK 929


>gi|224373321|ref|YP_002607693.1| histidine kinase [Nautilia profundicola AmH]
 gi|223589150|gb|ACM92886.1| histidine kinase [Nautilia profundicola AmH]
          Length = 496

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 31  IENSLDA--ESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           + N++D+   SS    ++  V+    K     I DNG G+  E +    + + T+K+ D 
Sbjct: 383 LNNAIDSLKNSSIENKKILIVVKKEKKGIIISIIDNGGGIKEEYLEKIFEPYFTTKLKDK 442

Query: 84  FSNIHTF 90
            S I  +
Sbjct: 443 GSGIGLY 449


>gi|78484709|ref|YP_390634.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2]
 gi|78362995|gb|ABB40960.1| DNA topoisomerase IV subunit B [Thiomicrospira crunogena XCL-2]
          Length = 628

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETV-IAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +S++     A G      + D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEAIAGHASKIIVTHFADG---SIAVEDDGRGMPVD 77


>gi|26553455|ref|NP_757389.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2]
 gi|26453461|dbj|BAC43793.1| DNA gyrase subunit B [Mycoplasma penetrans HF-2]
          Length = 649

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 14/56 (25%)

Query: 29 ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC-TSK 79
          E+++NS+D A    +S +   +   G +  ++ D+G G+        V++H  T K
Sbjct: 46 EIVDNSIDEAMTGNASEITITLTKEGSA--KVQDDGRGIP-------VEKHAKTKK 92


>gi|114561498|ref|YP_749011.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
 gi|114332791|gb|ABI70173.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
          Length = 466

 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 23  PSIAIKELIENSL-DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
            S AI+ L+ N++  A S ++    A  GK     + D+G G+  +E+    +   
Sbjct: 357 LSRAIENLLRNAICYANS-QITISAAQVGKHILITVEDDGPGIDPKELEAIFKPFY 411


>gi|319442621|ref|ZP_07991777.1| signal transduction histidine kinase [Corynebacterium variabile DSM
           44702]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 23  PSIAIKELIENSLDAESS----RVETVI-----AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
            +  ++ L++N+    +     R+   +       G +  F + D+G G+  E+      
Sbjct: 331 LARVVRNLVDNA----ARHAEGRITLRVRSESTERGQRVQFTVADDGAGVPPEDRERIFD 386

Query: 74  RHC 76
           R  
Sbjct: 387 RFT 389


>gi|256761401|ref|ZP_05501981.1| predicted protein [Enterococcus faecalis T3]
 gi|256682652|gb|EEU22347.1| predicted protein [Enterococcus faecalis T3]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 549 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 595


>gi|228998531|ref|ZP_04158119.1| hypothetical protein bmyco0003_30920 [Bacillus mycoides Rock3-17]
 gi|228761256|gb|EEM10214.1| hypothetical protein bmyco0003_30920 [Bacillus mycoides Rock3-17]
          Length = 447

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRH 75
           I+R    I  L+ N+L   D E + ++  I    + + F I DNG G+   ++P    R+
Sbjct: 342 IQR---VIVNLLNNALIHTDVE-TLIQVRIKQTSRYTVFTIEDNGDGIHKNDLPHIFDRY 397


>gi|220935291|ref|YP_002514190.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219996601|gb|ACL73203.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 640

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + +++ V+     +   + D+G GM  +
Sbjct: 40 TRPNHLAQEVIDNSVDEAIAGHAKKIDVVLHKD--NSLSVADDGRGMPVD 87


>gi|254432280|ref|ZP_05045983.1| heat shock protein 90 [Cyanobium sp. PCC 7001]
 gi|197626733|gb|EDY39292.1| heat shock protein 90 [Cyanobium sp. PCC 7001]
          Length = 657

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 32/125 (25%)

Query: 27  IKELIENSLDA----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N +DA                   R++  I    K+   I+DNG GM+++E+  
Sbjct: 51  LRELVSNGVDAISKRRMAAMAGDCSEGGEGRIQIRIDREAKTL-TISDNGIGMSADEVKR 109

Query: 71  AVQRHCTSKISDDFSNIHT----------FGFRGEALPSIGAVSHLTLMS-RPPQNNTGA 119
            + +   S   D      +           GF      S    S + L+S    + +   
Sbjct: 110 YINQVAFSSAEDFLEKYKSESDAIIGHFGLGF----YSSFMVASQVELVSLSAREGSEAV 165

Query: 120 QIAIS 124
           + +  
Sbjct: 166 RWSCD 170


>gi|157415716|ref|YP_001482972.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386680|gb|ABV52995.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748356|gb|ADN91626.1| Sensor protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 403

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 302 LILNSIEAFKNKKRKIITITFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 357


>gi|78776204|ref|YP_392519.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251]
 gi|78496744|gb|ABB43284.1| DNA gyrase subunit B [Sulfurimonas denitrificans DSM 1251]
          Length = 769

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A   + +   +   G    +++DNG G+ ++
Sbjct: 38 VYEVIDNSIDEAMAGYCNTINVTLTKEGT--CRVSDNGRGIPTD 79


>gi|56962996|ref|YP_174723.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909235|dbj|BAD63762.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 539

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
             +K    N+ ++ +S +       G      + DNG G++++ I    +   + K
Sbjct: 446 NVVK----NAAESGASAIVVRAFPSGTQICVAVEDNGCGISADRIERLGEPFYSQK 497


>gi|325914643|ref|ZP_08176984.1| hypothetical protein XVE_0855 [Xanthomonas vesicatoria ATCC
          35937]
 gi|325539145|gb|EGD10800.1| hypothetical protein XVE_0855 [Xanthomonas vesicatoria ATCC
          35937]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 33 NSLDAESSRVETVIAGGGKSFFQITDNGFGM-TSEEIPMAV 72
          NS+DA +S++   ++        ITD+G G  T EE+    
Sbjct: 2  NSIDAGASKICINLSSA---AMSITDDGHGFRTREEVLECF 39


>gi|302344628|ref|YP_003809157.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301641241|gb|ADK86563.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 398

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 33  NSLDA--ESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+LDA     ++   +   G  +   +TD+G G+  EE+P       ++K
Sbjct: 293 NALDAMPGGGKLVIGLQLNGDLALITVTDSGKGVDPEELPYLFDPFYSTK 342


>gi|241666772|ref|YP_002984856.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862229|gb|ACS59894.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 1000

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAES------SRVETVIAGGGKSFFQI--T 57
           L     +++   ++I         L+ N++DA S        VE     GG     +  +
Sbjct: 875 LPPVNGDRVQLQQVINN-------LLRNAIDAVSGVKDRLRLVEIRTQLGGDGQISVAVS 927

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+  +      +   T+K
Sbjct: 928 DNGIGLDPDGGTRIFEAFYTTK 949


>gi|168182896|ref|ZP_02617560.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|182673926|gb|EDT85887.1| sensor histidine kinase [Clostridium botulinum Bf]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G++ E++P   +R   S
Sbjct: 382 VKVSLSKGEDKIFIKVEDNGEGISKEDLPHIFERFYRS 419


>gi|120435833|ref|YP_861519.1| DNA topoisomerase IV subunit B [Gramella forsetii KT0803]
 gi|117577983|emb|CAL66452.1| topoisomerase IV subunit B [Gramella forsetii KT0803]
          Length = 620

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 67/220 (30%), Gaps = 35/220 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS--- 78
           +KE+I+NS+D     A    +E  +         + D G G+   ++   V +  T    
Sbjct: 46  LKEVIDNSIDEFVMGAG-KTIEISVQN---QRVIVRDFGRGIPLGKVVDVVSKMNTGGKY 101

Query: 79  -----KISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
                K S   + + T      A+ ++ +   +   SR  +++       +  +   +  
Sbjct: 102 DTRAFKKSVGLNGVGTK-----AVNALSSYFRVE-SSRDTKSHAAEFEQGNLMEEEHLDE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT +                K  +     I  +++      P ++       F +
Sbjct: 156 TSRRRGTKIT-------FIPDEVIFKKYKFRNEYIEKMLKNYVYLNPGLTIVFNGEKFYS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
               +  +       +    I  + GED          + 
Sbjct: 209 ENGLKDLLGDSIHEDDMLYPILHLKGEDIEVAITHSRSQY 248


>gi|114798323|ref|YP_759701.1| DNA topoisomerase IV subunit B [Hyphomonas neptunium ATCC 15444]
 gi|114738497|gb|ABI76622.1| DNA topoisomerase IV, B subunit [Hyphomonas neptunium ATCC 15444]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++R++  +   G  F  + DNG G+  +
Sbjct: 55 EVLDNAMDEAVAGYANRIDIKLDADG--FLTVVDNGRGIPID 94


>gi|305666165|ref|YP_003862452.1| sensor histidine kinase [Maribacter sp. HTCC2170]
 gi|88707663|gb|EAQ99904.1| sensor histidine kinase [Maribacter sp. HTCC2170]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 22/78 (28%)

Query: 2   KIRK-LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITD 58
           KI++ L+  ++N I  G+             EN     ++ +     I    K   ++TD
Sbjct: 214 KIQQVLTNLLVNSIKYGQ-------------EN----GTTEISVENLIKN--KVIVRVTD 254

Query: 59  NGFGMTSEEIPMAVQRHC 76
           NG G++ + IP   +R  
Sbjct: 255 NGEGISEQHIPRLFERFY 272


>gi|304321475|ref|YP_003855118.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis
          HTCC2503]
 gi|303300377|gb|ADM09976.1| DNA topoisomerase IV subunit B [Parvularcula bermudensis
          HTCC2503]
          Length = 665

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +SR+E  +   GK    + DNG G+  +
Sbjct: 51 EVLDNSMDEAVAGHASRIEVHLDAEGK--LTVADNGRGIPID 90


>gi|91976956|ref|YP_569615.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5]
 gi|91683412|gb|ABE39714.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB5]
          Length = 684

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +
Sbjct: 77  EVIDNSMDEALAGHATFIEVELTTDG--FLTVSDNGRGIPVD 116


>gi|327312914|ref|YP_004328351.1| DNA topoisomerase IV subunit B [Prevotella denticola F0289]
 gi|326944601|gb|AEA20486.1| DNA topoisomerase IV subunit B [Prevotella denticola F0289]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 73/263 (27%), Gaps = 34/263 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMNAG-DRIEIDVEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S                +    +  
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALSS-----HFEVKSFRDGKVRELSFEKGNIRSDKTKKS 166

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           A   GT +                K+     +++ +++R        ++          +
Sbjct: 167 ADENGTYIYFE-------PDNTLFKNYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSR 219

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G           A 
Sbjct: 220 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 279

Query: 249 QFYVFINGRTVQDKFILSTIRTA 271
           + ++    +    K+    IR  
Sbjct: 280 KEHIARTIKEFFGKYEYGDIRNG 302


>gi|310287950|ref|YP_003939209.1| Signal transduction histidine kinase [Bifidobacterium bifidum S17]
 gi|311064827|ref|YP_003971553.1| sensor-like histidine kinase [Bifidobacterium bifidum PRL2010]
 gi|309251887|gb|ADO53635.1| Signal transduction histidine kinase [Bifidobacterium bifidum S17]
 gi|310867147|gb|ADP36516.1| SenX3 Sensor-like histidine kinase [Bifidobacterium bifidum
           PRL2010]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 26  AIKELIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           A+++++EN++       +  V   ++  GK+   ++ D+G G+   ++P   +R  
Sbjct: 316 AVRKMVENAIVYSHPGGAVGVSVALSPDGKNAVVRVIDHGEGVPKADLPRIFERFY 371


>gi|297807329|ref|XP_002871548.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317385|gb|EFH47807.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 29  ELIENSLDA---ESSRVETVI---AGGGKSFF-QITDNGFGMTSEEIP 69
           EL++NSLD     ++ V          GKS    + DNG GM      
Sbjct: 126 ELLDNSLDEVSNGATYVHVDSTTNKRDGKSSILIVEDNGGGMNPSTFR 173


>gi|298479894|ref|ZP_06998093.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|299144912|ref|ZP_07037980.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
 gi|295085680|emb|CBK67203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Bacteroides xylanisolvens XB1A]
 gi|298273703|gb|EFI15265.1| DNA gyrase, B subunit [Bacteroides sp. D22]
 gi|298515403|gb|EFI39284.1| DNA gyrase, B subunit [Bacteroides sp. 3_1_23]
          Length = 625

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 32/151 (21%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   ++E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMQAG-KKIEITVEEN--LRVSVRDYGRGIPQGKLIEAVSMLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPS-------------IGAVSH---LTLMSRPPQNNTG 118
                   + G  G       AL S             I   S    LT  ++  +   G
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETKNTEEENG 171

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFF 149
             I    +    +            +R+  +
Sbjct: 172 TYIFFEPDNTLFLNYCFKPEFIETMLRNYTY 202


>gi|238028425|ref|YP_002912656.1| putative CheA signal transduction histidine kinase [Burkholderia
           glumae BGR1]
 gi|237877619|gb|ACR29952.1| Putative CheA signal transduction histidine kinase [Burkholderia
           glumae BGR1]
          Length = 796

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 20/71 (28%)

Query: 24  SIAIK----ELIENSLD-----------AE---SSRVETVI-AGGGKSFFQITDNGFGMT 64
           +  +K     L+ N+LD           A    +  ++  +    G     ++D+G G+ 
Sbjct: 621 ATVVKDVFMHLLRNALDHGIEAPEARRAAGKPDAGTIDIEVGVDAGMLQITVSDDGRGLA 680

Query: 65  SEEIP-MAVQR 74
            E I  +A +R
Sbjct: 681 LERIRTIAGER 691


>gi|160884652|ref|ZP_02065655.1| hypothetical protein BACOVA_02641 [Bacteroides ovatus ATCC 8483]
 gi|156109687|gb|EDO11432.1| hypothetical protein BACOVA_02641 [Bacteroides ovatus ATCC 8483]
          Length = 625

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 32/151 (21%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   ++E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMQAG-KKIEITVEEN--LRVSVRDYGRGIPQGKLIEAVSMLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPS-------------IGAVSH---LTLMSRPPQNNTG 118
                   + G  G       AL S             I   S    LT  ++  +   G
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGNLLTDETKNTEEENG 171

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFF 149
             I    +    +            +R+  +
Sbjct: 172 TYIFFEPDNTLFLNYCFKPEFIETMLRNYTY 202


>gi|152977818|ref|YP_001343447.1| DNA gyrase subunit B [Actinobacillus succinogenes 130Z]
 gi|150839541|gb|ABR73512.1| DNA gyrase, B subunit [Actinobacillus succinogenes 130Z]
          Length = 811

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 72/247 (29%), Gaps = 26/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I     +   + D+G G+      EE   A +      H
Sbjct: 46  EVVDNAIDEALAGYCKDIIVTIHED--NSISVQDDGRGIPVDIHPEEGVSAAEVIMTVLH 103

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        +      +  +   +
Sbjct: 104 AGGKFDDNSYKV-SGGLHGVGVSVVNALSDKLQLTIRRQG--HVHEQFYHLGEPQAPLKI 160

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +          +   P+   F K+   E +++   +R ++     VS      +  + 
Sbjct: 161 IGDSEKTGTTVHFW---PSSAIFTKTV-FEYDILKKRLRELSFLNSGVSIKLFDERDGKN 216

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
                                           +   I ++       +N       Y F 
Sbjct: 217 DHFHYEGGIQAFVEFLNQNKTPIHQKPFYFTMEKEGIGVEVAL---QWNDSYNENIYCFT 273

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 274 NNIPQRD 280


>gi|327539866|gb|EGF26469.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
           baltica WH47]
          Length = 769

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAESSR----------VETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+ DA + R          +    +  G     ++ DNG GM+ +       +  T+
Sbjct: 642 LIVNAADAIAERKENEPELEGKITISTVENGETVEIRVKDNGTGMSEDVRSKVFNQFFTT 701

Query: 79  K 79
           K
Sbjct: 702 K 702


>gi|260439322|ref|ZP_05793138.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292808332|gb|EFF67537.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 818

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 20/93 (21%)

Query: 2  KIRKLSEKIINQI----AAGEIIERPSIAIKELIENSLDAESSRVET------VIAGGGK 51
          KI  +   I ++I    +AG     P+ A +ELI NS DA +S+V         ++    
Sbjct: 9  KIDDIDVTISSRIIELFSAGLY-SSPNKAFEELICNSYDAFASKVAVYSPDDPTVSNA-- 65

Query: 52 SFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           +  + DNG G+ + E+          KI +  
Sbjct: 66 -YIWVCDNGEGLDAGELKQLW------KIGESL 91


>gi|260433138|ref|ZP_05787109.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis
          ITI-1157]
 gi|260416966|gb|EEX10225.1| DNA topoisomerase IV, B subunit [Silicibacter lacuscaerulensis
          ITI-1157]
          Length = 652

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +      +   + DNG G+  +
Sbjct: 48 VAEILDNSMDEAVAGHANRIEVELHEDYSLT---VRDNGRGIPID 89


>gi|269794677|ref|YP_003314132.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269096862|gb|ACZ21298.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 613

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 22  RPSIAIKELIENSLD-AESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           R    ++ L+ N++  +E SR++   A  G +   ++ D+G GMT++++     R 
Sbjct: 491 RVRQVVENLVANAVQHSEGSRIDLRAALDGTTVVLEVADDGIGMTADDLSRLFDRF 546


>gi|259418258|ref|ZP_05742176.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B]
 gi|259345653|gb|EEW57497.1| DNA topoisomerase IV, B subunit [Silicibacter sp. TrichCH4B]
          Length = 652

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +      +   + DNG G+  +
Sbjct: 48 VAEILDNSMDEAVAGHANRIEVELHEDYSLT---VRDNGRGIPID 89


>gi|237728210|ref|ZP_04558691.1| sensory histidine kinase DcuS [Citrobacter sp. 30_2]
 gi|226910221|gb|EEH96139.1| sensory histidine kinase DcuS [Citrobacter sp. 30_2]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 19/76 (25%)

Query: 30  LIENSLDA------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LIEN+L+A          +   +    G    ++ D+G G+  E I    ++  +SK ++
Sbjct: 442 LIENALEALGQEPGG--EISVSLHYRHGWLHCEVNDDGPGIAPENIEHIFEKGVSSKGTE 499

Query: 83  DFSNIHTFGFRGEALP 98
                     RG  L 
Sbjct: 500 ----------RGVGLA 505


>gi|94497233|ref|ZP_01303805.1| periplasmic sensor signal transduction histidine kinase
           [Sphingomonas sp. SKA58]
 gi|94423338|gb|EAT08367.1| periplasmic sensor signal transduction histidine kinase
           [Sphingomonas sp. SKA58]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 22  RPSIAIKELIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
               A++ L+EN+L   D    R    +   G     ++ D+G G+  E +   ++    
Sbjct: 328 SLRRAVRNLVENALHYGD----RARVSLLRKGLEVLIRVDDDGPGIPRERLEEVLRPF-- 381

Query: 78  SKISDDFSNIHTFG 91
           S++ DD    +T G
Sbjct: 382 SRL-DDARQRNTRG 394


>gi|330954842|gb|EGH55102.1| sensor histidine kinase [Pseudomonas syringae Cit 7]
          Length = 619

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  L+ N+LDA       R   +       G + + 
Sbjct: 483 IRDLPDATIW-VQAGE--TRLRQVLGNLLANALDALTEKGPPRRLWISVEQTAEGVNLY- 538

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 539 IRDNGPGFSQEALARAREPFFTTK 562


>gi|302554400|ref|ZP_07306742.1| heat shock protein [Streptomyces viridochromogenes DSM 40736]
 gi|302472018|gb|EFL35111.1| heat shock protein [Streptomyces viridochromogenes DSM 40736]
          Length = 612

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 25/119 (21%)

Query: 27  IKELIENSLDA---------ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++EL++N++DA          +      + A GG    ++ D G G+T  ++   +    
Sbjct: 44  LRELLQNAVDAITARRTTQPGAPA-RVRLYAEGGA--LRVEDTGVGLTEADLHDLL---A 97

Query: 77  T----SKISDDFSNIHTFGFRGEA----LPSIGAVSHLTLMSRPPQNNTGAQIAISGEK 127
           T    SK ++D     + GF G+     L        + ++SR  +    + +  +   
Sbjct: 98  TIGRSSKRAEDVQEARS-GFLGQFGIGLLACFVVAERIRVVSRSARTPEASPVEWTACD 155


>gi|298484712|ref|ZP_07002814.1| Sensor histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160745|gb|EFI01764.1| Sensor histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 605

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR---VETVIAGGGKSFFQ 55
           IR L +  I  + AGE   R    +  L+ N+LDA       R   +       G + + 
Sbjct: 469 IRDLPDATIW-VQAGE--TRLRQVLGNLLANALDALTEKGPPRRLWISVEQTAEGVNLY- 524

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           I DNG G + E +  A +   T+K
Sbjct: 525 IRDNGPGFSQEALARAREPFFTTK 548


>gi|257455167|ref|ZP_05620405.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60]
 gi|257447500|gb|EEV22505.1| DNA gyrase, B subunit [Enhydrobacter aerosaccus SK60]
          Length = 830

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A    +++ +I         + DNG G+  +
Sbjct: 64  EVVDNAIDEALAGHCDQIDIIIHED--ESVSVKDNGRGIPVD 103


>gi|288940802|ref|YP_003443042.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896174|gb|ADC62010.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 876

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 30  LIENSL----D---AESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LI+N+L    D   A   R+         G    +++D+G G+  + +        T
Sbjct: 741 LIQNALLHAFDGRTAG--RIRIESQSAAPGFILIRVSDDGNGIPQDYLDRIFDPFFT 795


>gi|239908639|ref|YP_002955381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798506|dbj|BAH77495.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 361

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 30  LIENSLDA---ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---SKISD 82
           L++N+LDA       V    +  GG+    ++D+G G+     P   +   +   SK   
Sbjct: 265 LVDNALDAMAGGPGTVRVEAVVVGGEFVLTVSDDGPGIDEAIAPRIFEPFFSTRDSKAHS 324

Query: 83  DF 84
             
Sbjct: 325 GL 326


>gi|220918471|ref|YP_002493775.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956325|gb|ACL66709.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 542

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 22  RPSIAIKELIENSLDA------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R +  I  L+ N+  A        + V       G +  ++ D+G G+  E      +  
Sbjct: 412 RLAQVIGNLLSNA--AKFAGPDGKTEVSVAREEPGIAVVRVRDDGVGIAPEVRSRLFEPF 469

Query: 76  C 76
            
Sbjct: 470 A 470


>gi|116073307|ref|ZP_01470569.1| periplasmic sensor signal transduction histidine kinase
           [Synechococcus sp. RS9916]
 gi|116068612|gb|EAU74364.1| periplasmic sensor signal transduction histidine kinase
           [Synechococcus sp. RS9916]
          Length = 496

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 21  ERPSIAIKELIEN----SLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    + +LIEN    S D   + V   +A     +  ++ D G G+  E++P    R 
Sbjct: 377 DRLRQVLLDLIENAHKYSPD--GTPVTVRLAQAEAMAVVEVVDQGIGIPPEDLPKVFDRF 434

Query: 76  C 76
            
Sbjct: 435 H 435


>gi|83594433|ref|YP_428185.1| multi-sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577347|gb|ABC23898.1| multi-sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 688

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 24  SIAIKELIENSLDAESSR-VETVI---AGGGKSFFQITDNGFGMTSEEIPMA 71
           +  +  L++N++DA ++      +    GGG++  ++ D G GM  E+  +A
Sbjct: 578 ASVLDHLLQNAIDAVATTGGTVRLSHREGGGQAIVEVADEGPGM--EDAFIA 627


>gi|289670376|ref|ZP_06491451.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 436

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G      + DNG G+    + 
Sbjct: 180 LENVVLNLVINARDALKGQGTIRIQSEAYTAHDDPELEDGDYVAVNVIDNGSGIEPAILD 239

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 240 QVFEPFFTTKPIGEGTGLGLSMTYGF 265


>gi|289662748|ref|ZP_06484329.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G      + DNG G+    + 
Sbjct: 397 LENVVLNLVINARDALKGQGTIRIQSEAYTAHDDPELEDGDYVAVNVIDNGSGIEPAILD 456

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 457 QVFEPFFTTKPIGEGTGLGLSMTYGF 482


>gi|255016269|ref|ZP_05288395.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 471

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 24  SIAIKELIENSLDAESS------RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +  +  LIEN++            ++ V+     G     ++DNGFG+  +E     ++ 
Sbjct: 364 ANVLSNLIENAI----KYSGEEVNIDIVVLWNQQGVGL-TVSDNGFGIAPDERRKVFEKF 418

Query: 76  CTS 78
             S
Sbjct: 419 YRS 421


>gi|150009414|ref|YP_001304157.1| two-component system sensor histidine kinase [Parabacteroides
          distasonis ATCC 8503]
 gi|149937838|gb|ABR44535.1| two-component system sensor histidine kinase [Parabacteroides
          distasonis ATCC 8503]
          Length = 145

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 13/63 (20%)

Query: 24 SIAIKELIENSLDAESS------RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
          +  +  LIEN++            ++ V+     G     ++DNGFG+  +E     ++ 
Sbjct: 38 ANVLSNLIENAI----KYSGEEVNIDIVVLWNQQGVGL-TVSDNGFGIAPDERRKVFEKF 92

Query: 76 CTS 78
            S
Sbjct: 93 YRS 95


>gi|110803693|ref|YP_697357.1| DNA gyrase subunit B [Clostridium perfringens SM101]
 gi|110684194|gb|ABG87564.1| DNA gyrase, B subunit [Clostridium perfringens SM101]
          Length = 638

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I     +   + D+G GM 
Sbjct: 43 VYEIVDNSIDEALAGYCKNIKVYIHKD--NSITVVDDGRGMP 82


>gi|332981485|ref|YP_004462926.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699163|gb|AEE96104.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 473

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +V+  +    G++  ++ DNG G+   ++P    R  
Sbjct: 385 KVDVCLRKKDGEALIEVVDNGMGIPRADLPYIFDRFY 421


>gi|266619603|ref|ZP_06112538.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288868825|gb|EFD01124.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 498

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 31  IENS---LDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           + NS   +D ++  +   I   G     +I DNG G+ ++++P    R  
Sbjct: 393 VSNSVKYIDKKNGIINIRIKDVGDFIQIEIEDNGKGIAAKDLPNIFDRFY 442


>gi|255323607|ref|ZP_05364737.1| DNA gyrase, B subunit [Campylobacter showae RM3277]
 gi|255299321|gb|EET78608.1| DNA gyrase, B subunit [Campylobacter showae RM3277]
          Length = 769

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 13/57 (22%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          E+++NS+D   A     ++  +   G +    +DNG G+        V  H T KIS
Sbjct: 41 EVVDNSIDEAMAGYCDTIDIELTREGSAII--SDNGRGIP-------VGMHPTEKIS 88


>gi|255693869|ref|ZP_05417544.1| heat shock protein HtpG [Bacteroides finegoldii DSM 17565]
 gi|260620318|gb|EEX43189.1| heat shock protein HtpG [Bacteroides finegoldii DSM 17565]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     +   +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTIHVEL---GKDTITISDRGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++       
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYKDGAQ 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AVKWTCD 147


>gi|187938361|gb|ACD38218.1| DNA gyrase subunit B [Vibrio harveyi]
          Length = 778

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 78/246 (31%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   +TD+G G+      EE   A +      H
Sbjct: 26  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHPEEKVSAAEVIMTVLH 83

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   +++     +   Q    GE  + +  + 
Sbjct: 84  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHIHTQTYHHGEPQAPLAVIG 142

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R      P+      + +   +++   +R ++     VS      +    K
Sbjct: 143 DTDQTGTQIRF----WPSAETST-NIEFHYDILAKRLRELSFLNSGVSIKL-VDEREADK 196

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 197 SDHFMFEGGIQAFVEHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTN 256

Query: 256 GRTVQD 261
               +D
Sbjct: 257 NIPQRD 262


>gi|114327402|ref|YP_744559.1| two component system histidine kinase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315576|gb|ABI61636.1| two component system histidine kinase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 478

 Score = 42.7 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+ N+L A   S+ +   ++  G     I D G G+  E++      +
Sbjct: 382 LLNNAL-AYGGSATIRISLSVNGMVRMDIEDEGPGIPPEDMERVFDPY 428


>gi|319953932|ref|YP_004165199.1| heat shock protein hsp90 [Cellulophaga algicola DSM 14237]
 gi|319422592|gb|ADV49701.1| Heat shock protein Hsp90 [Cellulophaga algicola DSM 14237]
          Length = 628

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 26/123 (21%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA           E+S       +E  +   GK    I D G GMT +E+ 
Sbjct: 29  LRELISNATDATLKLKHLTSIGEASVEYGNPIIEVKVDKEGKK-IHIIDQGLGMTEDEVK 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQI 121
             +     S       K  D   +    G  G    S   V S + ++++  ++      
Sbjct: 88  KYINEVAFSGAEEFLDKYKDSAKDSGIIGHFGLGFYSAFMVASKVEIITKSFKDEPAVHW 147

Query: 122 AIS 124
           +  
Sbjct: 148 SCD 150


>gi|295705450|ref|YP_003598525.1| two-component sensor histidine kinase BceS [Bacillus megaterium DSM
           319]
 gi|294803109|gb|ADF40175.1| two-component sensor histidine kinase BceS [Bacillus megaterium DSM
           319]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 43  ETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           + +I      G+ + ++ DNG G++ +++P   ++  TS
Sbjct: 240 DVMIRSYEHRGQVYIEVKDNGRGISPQDMPRIFEKGFTS 278


>gi|291531585|emb|CBK97170.1| Molecular chaperone, HSP90 family [Eubacterium siraeum 70/3]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 35/126 (27%)

Query: 27  IKELIENSLDA------ES--SRVETVIAGGGKSF--------FQITDNGFGMTSEEIP- 69
           ++ELI N+ DA      +S    +       G             ITDNG GMT +E+  
Sbjct: 32  LRELISNASDALDKLYFKSLTENLGIERKDLGIDLAVDKENRLITITDNGIGMTKDELEN 91

Query: 70  -MAVQRHCTS-KI--------SDDFSNIHTF--GFRGEALPSIGAV-SHLTLMSRPPQNN 116
            + V  +  S K          DD + I  F  GF      S   V S +T+ S+   + 
Sbjct: 92  NLGVIANSGSFKFKNDNTDTEKDDINVIGQFGVGF-----YSAFMVASEVTVESKAYGSE 146

Query: 117 TGAQIA 122
              +  
Sbjct: 147 QAYKWY 152


>gi|257083561|ref|ZP_05577922.1| predicted protein [Enterococcus faecalis Fly1]
 gi|256991591|gb|EEU78893.1| predicted protein [Enterococcus faecalis Fly1]
          Length = 659

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 549 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 595


>gi|225716926|gb|ACO14309.1| MORC family CW-type zinc finger protein 3 [Esox lucius]
          Length = 82

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 23 PSIAIKELIENSLDAE--SSRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQ 73
          P  A+ ELI+N+ D    + ++   +    K      TDNG GMT  ++   ++
Sbjct: 29 PFSAVAELIDNASDPGVTAKQIWIDVVEEQKQLCLAFTDNGSGMTPGKLHKMLR 82


>gi|183981532|ref|YP_001849823.1| two-component sensor histidine kinase DevS [Mycobacterium marinum
           M]
 gi|183174858|gb|ACC39968.1| two-component sensor histidine kinase DevS [Mycobacterium marinum
           M]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
             ++E + N++  A+++ +   +        +++DNG GM  
Sbjct: 502 AVVREAVSNAVRHAQATTLTVRVKVDDDLCIEVSDNGRGMPK 543


>gi|169826281|ref|YP_001696439.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
 gi|168990769|gb|ACA38309.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
          Length = 446

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            V   +    K    I DNG G++SE++    +R+ 
Sbjct: 364 SVHVSVD---KDSITIADNGKGISSEDLEHIFERYY 396


>gi|78707333|gb|ABB46473.1| DNA gyrase subunit B [Acholeplasma axanthum]
          Length = 589

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   +  G     ++TDNG G+  +
Sbjct: 23 EIVDNSIDEALAGYADDIILELLPG--EVVRVTDNGRGIPVD 62


>gi|78707335|gb|ABB46474.1| DNA gyrase subunit B [Acholeplasma axanthum]
 gi|78707337|gb|ABB46475.1| DNA gyrase subunit B [Acholeplasma axanthum]
 gi|78707339|gb|ABB46476.1| DNA gyrase subunit B [Acholeplasma axanthum]
          Length = 589

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   +  G     ++TDNG G+  +
Sbjct: 23 EIVDNSIDEALAGYADDIILELLPG--EVVRVTDNGRGIPVD 62


>gi|118617913|ref|YP_906245.1| two component sensor histidine kinase DevS [Mycobacterium ulcerans
           Agy99]
 gi|118570023|gb|ABL04774.1| two component sensor histidine kinase DevS [Mycobacterium ulcerans
           Agy99]
          Length = 585

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
             ++E + N++  A+++ +   +        +++DNG GM  
Sbjct: 502 AVVREAVSNAVRHAQATTLTVRVKVDDDLCIEVSDNGRGMPK 543


>gi|114799972|ref|YP_759237.1| putative sensor histidine kinase/response regulator CckA
           [Hyphomonas neptunium ATCC 15444]
 gi|114740146|gb|ABI78271.1| putative sensor histidine kinase/response regulator CckA
           [Hyphomonas neptunium ATCC 15444]
          Length = 867

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +  G     ++ DNG GM  E +    Q   T+K
Sbjct: 638 VEDGEYLLIEVEDNGTGMPRELLDKIFQPFFTTK 671


>gi|78777163|ref|YP_393478.1| Cache sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497703|gb|ABB44243.1| Cache sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 743

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 25/108 (23%)

Query: 7   SEKIINQI-----AAGEIIERPSIAIKELIE------NSLDAESSRVETVIA-GGGKSFF 54
           +++++ QI      +G      +  IK  IE      NS    +  ++  I         
Sbjct: 624 NDEVVVQIMKYRLQSGV-----ANVIKNAIESISLSKNS---GNGIIDITIKREKNMVLL 675

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTF-GFRGEALPSIG 101
            + DNG G+  ++I        T+K       +HT   F    L SIG
Sbjct: 676 IVQDNGCGVARDDIDKIFGFGYTTKKGGSGFGLHTLNNF----LNSIG 719


>gi|86157703|ref|YP_464488.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774214|gb|ABC81051.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 630

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 30  LIENSLDA----ESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA       RVE   A   G+   ++TD+G G+  E +P       T+K
Sbjct: 533 LLLNAIDASGPGG--RVEISTAAADGRVSVRVTDHGPGIAPEHLPRIFDPFFTTK 585


>gi|27530064|dbj|BAC53887.1| DNA gyrase B subunit [Tatlockia micdadei]
          Length = 466

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +  +I         + D+G G+  +
Sbjct: 14 EVVDNSIDEALAGYCHEISVIIHAD--ESITVKDDGRGIPVD 53


>gi|260061102|ref|YP_003194182.1| sensory transduction histidine kinase [Robiginitalea biformata
           HTCC2501]
 gi|88785234|gb|EAR16403.1| sensory transduction histidine kinase [Robiginitalea biformata
           HTCC2501]
          Length = 484

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 26  AIKELIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  L++N++ A    +  R+   +A   G     + DNG G+ ++      +   T+K
Sbjct: 383 VVTNLVKNAIQAVPEVDHPRILVSVAAEDGFVKIMVADNGIGIEADNRDKVFEPKFTTK 441


>gi|330889130|gb|EGH21791.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 207

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 101 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 158

Query: 76  CTSK 79
            T K
Sbjct: 159 WTVK 162


>gi|327482439|gb|AEA85749.1| DNA topoisomerase IV subunit B [Pseudomonas stutzeri DSM 4166]
          Length = 628

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 22/196 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM      EE    + 
Sbjct: 29  RPNHLAQEVIDNSVDEALAGHARSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGVE 86

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   + 
Sbjct: 87  LILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVTVKRDGNEYRMSFADGFKA 145

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
                  ++           +        +  S +   + +  V++  A+  P +S +F 
Sbjct: 146 SDLEVIGSVGKRNTGTSVRFWADP----KYFDSPKFSISRLKHVLKAKAVLCPGLSVSFE 201

Query: 188 TIKSNRYKMNFQSTNG 203
             KS   K+ +   +G
Sbjct: 202 -DKSTGEKVEWHYEDG 216


>gi|322513687|ref|ZP_08066782.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae
          ATCC 25976]
 gi|322120495|gb|EFX92402.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Actinobacillus ureae
          ATCC 25976]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHAD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|313904729|ref|ZP_07838103.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
 gi|313470522|gb|EFR65850.1| DNA gyrase, B subunit [Eubacterium cellulosolvens 6]
          Length = 645

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S +E  I     +   + D+G G+ 
Sbjct: 46 VYEIVDNSVDEALAGYCSHIEVTINQD--NSITVVDDGRGIP 85


>gi|307252887|ref|ZP_07534776.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306859676|gb|EFM91700.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHAD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|303250664|ref|ZP_07336861.1| truncated DNA topoisomerase IV subunit B [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
 gi|302650652|gb|EFL80811.1| truncated DNA topoisomerase IV subunit B [Actinobacillus
          pleuropneumoniae serovar 6 str. Femo]
          Length = 570

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHAD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|302341474|ref|YP_003806003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301638087|gb|ADK83409.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 593

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAESS--RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQ---RHCTSK 79
           L++N+L    +  +V    IA GG++  ++ D G G+ ++E+ +  +   R   SK
Sbjct: 488 LLDNALQHSPTGGQVHVSVIAEGGEAQVRVRDQGSGIPADELSLIFEPFFRGSNSK 543


>gi|299065057|emb|CBJ36218.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
          solanacearum CMR15]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 54 EVLDNSIDEALAGHCTEIHVTIHTD--NSISVIDNGRGIP 91


>gi|289626895|ref|ZP_06459849.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648785|ref|ZP_06480128.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487898|ref|ZP_07005938.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157623|gb|EFH98703.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330869139|gb|EGH03848.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 745

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|317131014|ref|YP_004090328.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468993|gb|ADU25597.1| DNA gyrase, B subunit [Ethanoligenens harbinense YUAN-3]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +   I    ++  ++TD+G G+ 
Sbjct: 47 VYEIVDNAIDEALAGYCHNIHVEILP--ENVIRVTDDGRGIP 86


>gi|207727476|ref|YP_002255870.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2]
 gi|300702377|ref|YP_003743977.1| DNA gyrase subunit B [Ralstonia solanacearum CFBP2957]
 gi|206590713|emb|CAQ56325.1| dna gyrase (subunit b) protein [Ralstonia solanacearum MolK2]
 gi|299070038|emb|CBJ41323.1| DNA gyrase, subunit B (type II topoisomerase) [Ralstonia
          solanacearum CFBP2957]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 54 EVLDNSIDEALAGHCTEIHVTIHTD--NSISVIDNGRGIP 91


>gi|165976673|ref|YP_001652266.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|165876774|gb|ABY69822.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
          Length = 637

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHAD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|163802136|ref|ZP_02196031.1| DNA gyrase subunit B [Vibrio sp. AND4]
 gi|159173941|gb|EDP58751.1| DNA gyrase subunit B [Vibrio sp. AND4]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A     +   I     +   +TD+G G+ +E          E+ M V  
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVTDDGRGIPTEMHSEEKVSAAEVIMTVL- 98

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
           H   K  D+   + + G  G  +  + A+S   +++     +T  Q    G+  + +  V
Sbjct: 99  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVVLTIHRGGHTHTQTYHHGDPQAPLAVV 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T  ++R      P+   F  + +   +++   +R ++     VS      +    
Sbjct: 158 GDTDQTGTQIRF----WPSAETFT-NIEFHYDILAKRLRELSFLNSGVSIKL-VDEREED 211

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           K +     G     +  +            +                +N G     Y F 
Sbjct: 212 KSDHFMYEGGIQAFVEHLNTNKTPIVEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|159483123|ref|XP_001699612.1| hypothetical protein CHLREDRAFT_193872 [Chlamydomonas
          reinhardtii]
 gi|158272717|gb|EDO98514.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 2957

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 23 PSIAIKELIENSLDA----ESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
          P I + ELI+NS+DA    +S ++   +       G       DNG GM    +    +
Sbjct: 19 PDIMVMELIDNSIDATLHRKSPKITIEVNLLPDDKGGPQITFMDNGRGMDLSTLHNYFR 77


>gi|71734348|ref|YP_275602.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554901|gb|AAZ34112.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 745

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|17548157|ref|NP_521559.1| DNA gyrase subunit B [Ralstonia solanacearum GMI1000]
 gi|17430464|emb|CAD16937.1| probable dna gyrase (subunit b) protein [Ralstonia solanacearum
          GMI1000]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 54 EVLDNSIDEALAGHCTEIHVTIHTD--NSISVIDNGRGIP 91


>gi|148264074|ref|YP_001230780.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146397574|gb|ABQ26207.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 422

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L +N+L    D  S R+   IA G      + D+G G++ E++    +   
Sbjct: 310 DRLVQVLLNLFKNALQAMPDGGSLRISAGIA-GSAVSITVADSGAGISQEDMARIFEPFF 368

Query: 77  TSK 79
           T+K
Sbjct: 369 TTK 371


>gi|83749736|ref|ZP_00946713.1| DNA gyrase subunit B [Ralstonia solanacearum UW551]
 gi|207741917|ref|YP_002258309.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609]
 gi|83723588|gb|EAP70789.1| DNA gyrase subunit B [Ralstonia solanacearum UW551]
 gi|206593303|emb|CAQ60230.1| dna gyrase (subunit b) protein [Ralstonia solanacearum IPO1609]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I     +   + DNG G+ 
Sbjct: 54 EVLDNSIDEALAGHCTEIHVTIHTD--NSISVIDNGRGIP 91


>gi|320325610|gb|EFW81672.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320327106|gb|EFW83120.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 19/74 (25%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S      I   G+   ++ DNG G+ +E  
Sbjct: 519 TRLEQILVNLIGNALDAMFNQPAPELWLTGS------IED-GRYRLRVRDNGHGIDTETR 571

Query: 69  PMAVQRHCTSKISD 82
               +   T+K  +
Sbjct: 572 KHLFEPFFTTKTGE 585


>gi|320325053|gb|EFW81122.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 733

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 627 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 684

Query: 76  CTSK 79
            T K
Sbjct: 685 WTVK 688


>gi|319952084|ref|YP_004163351.1| DNA gyrase subunit b [Cellulophaga algicola DSM 14237]
 gi|319420744|gb|ADV47853.1| DNA gyrase subunit B [Cellulophaga algicola DSM 14237]
          Length = 653

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A       +   I     +   + DNG G+  +
Sbjct: 49 VYEVVDNSIDEAMGGHCDTITVAINED--NSITVRDNGRGIPVD 90


>gi|313157268|gb|EFR56695.1| ATPase family protein [Alistipes sp. HGB5]
          Length = 642

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSF-----FQITDNGFGMTSE 66
          E I N++DA ++ ++  IA    S        I+DNG G T++
Sbjct: 28 EAIANAIDAGANNIQISIAVDSYSKPESLTIVISDNGVGFTND 70


>gi|311897312|dbj|BAJ29720.1| putative DNA gyrase subunit B [Kitasatospora setae KM-6054]
          Length = 663

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +  +   I A GG    ++ DNG G+ 
Sbjct: 53 VYEIVDNSVDEALAGHADTIGVTILADGG---VRVVDNGRGIP 92


>gi|308376284|ref|ZP_07438242.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008]
 gi|308351597|gb|EFP40448.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu008]
          Length = 696

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 69  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 124

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 125 HAGGKFDSDAYAIS 138


>gi|307069626|ref|YP_003878103.1| putative DNA gyrase subunit B [Candidatus Zinderia insecticola
           CARI]
 gi|306482886|gb|ADM89757.1| putative DNA gyrase, B subunit [Candidatus Zinderia insecticola
           CARI]
          Length = 817

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAV---- 72
           E+I+NS+D   +   + +   I     ++  I DNG G+     E+     +  A     
Sbjct: 44  EVIDNSIDEFLSGFCNLINIKIYKN--NYISIYDNGRGIPINIKEDDNNIPLRSAAEIVM 101

Query: 73  -QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH 105
            + H  SK ++    I + G  G  L  + A+S 
Sbjct: 102 TELHSGSKFNNKSYKISS-GLHGVGLSCLNALSK 134


>gi|301162993|emb|CBW22541.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 821

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 14/84 (16%)

Query: 1  MKI---RKLSE---KIINQI----AAGEIIERPSIAIKELIENSLDAESSRVETVIAG-- 48
          MKI   +K+ +    +  +I    +AG     P+ A +EL+ NS DA +S+V   ++   
Sbjct: 1  MKINTGKKIDDIHVTLSYRIIELFSAGLY-SSPNKAFEELVCNSYDAHASKVGVYVSSDL 59

Query: 49 -GGKSFFQITDNGFGMTSEEIPMA 71
              ++  + DNG  M  +E+   
Sbjct: 60 AAEGAYMWVCDNGDSMNHDELKNL 83


>gi|260203142|ref|ZP_05770633.1| DNA gyrase subunit B [Mycobacterium tuberculosis K85]
          Length = 675

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 48  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 103

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 104 HAGGKFDSDAYAIS 117


>gi|219555776|ref|ZP_03534852.1| DNA gyrase subunit B [Mycobacterium tuberculosis T17]
          Length = 406

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 87  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 142

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 143 HAGGKFDSDAYAIS 156


>gi|215432910|ref|ZP_03430829.1| DNA gyrase subunit B [Mycobacterium tuberculosis EAS054]
 gi|260198989|ref|ZP_05766480.1| DNA gyrase subunit B [Mycobacterium tuberculosis T46]
 gi|289441372|ref|ZP_06431116.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46]
 gi|289748467|ref|ZP_06507845.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92]
 gi|289756064|ref|ZP_06515442.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289414291|gb|EFD11531.1| DNA gyrase, B subunit [Mycobacterium tuberculosis T46]
 gi|289689054|gb|EFD56483.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis T92]
 gi|289696651|gb|EFD64080.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 87  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 142

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 143 HAGGKFDSDAYAIS 156


>gi|215425191|ref|ZP_03423110.1| DNA gyrase subunit B [Mycobacterium tuberculosis T92]
          Length = 675

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 48  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 103

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 104 HAGGKFDSDAYAIS 117


>gi|212633571|ref|YP_002310096.1| sensor histidine kinase [Shewanella piezotolerans WP3]
 gi|212555055|gb|ACJ27509.1| Sensor histidine kinase [Shewanella piezotolerans WP3]
          Length = 465

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA---ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA    SS + T +    K   QI D G GM+  E+  A +   ++K
Sbjct: 367 LICNAIDASDENSSVIITAMQEQTKVIVQIEDFGCGMSEAELNKATELFYSTK 419


>gi|163639423|gb|ABY28262.1| ethylene receptor ERS1a [Actinidia deliciosa]
          Length = 466

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
             Q+ D G G+  E+IP++  +   SK     +N
Sbjct: 349 RVQVKDTGCGINPEDIPLSFTKFAQSKSGSSLNN 382


>gi|163859304|ref|YP_001633602.1| sensor histidine kinase TctE [Bordetella petrii DSM 12804]
 gi|163263032|emb|CAP45335.1| sensor histidine kinase TctE [Bordetella petrii]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 30  LIENSL--DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++   A +S+V   +    + +   + DNG GM++E+I  A  R 
Sbjct: 415 LVDNAIRYTAPASQVTVRVYADERYARLTVEDNGPGMSAEDIARASVRF 463


>gi|148821196|ref|YP_001285950.1| DNA gyrase subunit B [Mycobacterium tuberculosis F11]
 gi|148719723|gb|ABR04348.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis F11]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 87  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGILTVDVVM-TQL 142

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 143 HAGGKFDSDAYAIS 156


>gi|254366465|ref|ZP_04982509.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem]
 gi|134151977|gb|EBA44022.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis str. Haarlem]
          Length = 697

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 70  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 125

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 126 HAGGKFDSDAYAIS 139


>gi|167969468|ref|ZP_02551745.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215413859|ref|ZP_03422524.1| DNA gyrase subunit B [Mycobacterium tuberculosis 94_M4241A]
 gi|215448278|ref|ZP_03435030.1| DNA gyrase subunit B [Mycobacterium tuberculosis T85]
 gi|254548933|ref|ZP_05139380.1| DNA gyrase subunit B [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297632473|ref|ZP_06950253.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN 4207]
 gi|297729442|ref|ZP_06958560.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN R506]
 gi|313656771|ref|ZP_07813651.1| DNA gyrase subunit B [Mycobacterium tuberculosis KZN V2475]
 gi|158513716|sp|A5TY73|GYRB_MYCTA RecName: Full=DNA gyrase subunit B
 gi|158517773|sp|P0C5C5|GYRB_MYCTU RecName: Full=DNA gyrase subunit B
 gi|323717344|gb|EGB26549.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CDC1551A]
          Length = 675

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 48  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 103

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 104 HAGGKFDSDAYAIS 117


>gi|116253774|ref|YP_769612.1| two component sensor histidine kinase chemotaxis protein CheA
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258422|emb|CAK09525.1| CheA2-sensor kinase of secondary chemotaxis operon [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 683

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLD--------------AESSRVETVIAG-GGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D              +E+  V       GG+    I D+G G
Sbjct: 395 TVIERLADPLVHLVRNSIDHGLETPADRLASGKSEAGTVTLSARQAGGEVIISIKDDGRG 454

Query: 63  MTSE 66
           +  E
Sbjct: 455 INRE 458


>gi|78062613|ref|YP_372521.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
 gi|77970498|gb|ABB11877.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
          Length = 477

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESSR-VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  A     +   ++  G  +   + DNG G+ ++E     +R  
Sbjct: 372 LIDNAIRYAGDRAVITVRVSRDGEHARLDVIDNGPGIPADERDAVFERFH 421


>gi|1107468|gb|AAA83016.1| gyrase B [Mycobacterium tuberculosis H37Rv]
          Length = 686

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 59  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 114

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 115 HAGGKFDSDAYAIS 128


>gi|32476784|ref|NP_869778.1| two-component sensor [Rhodopirellula baltica SH 1]
 gi|32447330|emb|CAD77156.1| probable two-component sensor [Rhodopirellula baltica SH 1]
          Length = 769

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAESSR----------VETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+ DA + R          +    +  G     ++ DNG GM+ +       +  T+
Sbjct: 642 LIVNAADAIAERKENEPELEGKITISTVENGETVEIRVKDNGTGMSEDVRSKVFNQFFTT 701

Query: 79  K 79
           K
Sbjct: 702 K 702


>gi|31791182|ref|NP_853675.1| DNA gyrase subunit B [Mycobacterium bovis AF2122/97]
 gi|121635888|ref|YP_976111.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635915|ref|YP_976138.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224988388|ref|YP_002643055.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260184858|ref|ZP_05762332.1| DNA gyrase subunit B [Mycobacterium tuberculosis CPHL_A]
 gi|289445530|ref|ZP_06435274.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A]
 gi|289572581|ref|ZP_06452808.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85]
 gi|31616767|emb|CAD92867.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121491535|emb|CAL69989.1| DNA gyrase subunit B gyrB [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491562|emb|CAL70019.1| Dna gyrase subunit B gyrB (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224771501|dbj|BAH24307.1| DNA gyrase subunit B [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418488|gb|EFD15689.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis CPHL_A]
 gi|289537012|gb|EFD41590.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis K85]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 87  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 142

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 143 HAGGKFDSDAYAIS 156


>gi|15607147|ref|NP_214519.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Rv]
 gi|148659762|ref|YP_001281285.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|215405989|ref|ZP_03418170.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|218755721|ref|ZP_03534517.1| DNA gyrase subunit B [Mycobacterium tuberculosis GM 1503]
 gi|253796920|ref|YP_003029921.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435]
 gi|289552255|ref|ZP_06441465.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605]
 gi|289747775|ref|ZP_06507153.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289760102|ref|ZP_06519480.1| subunit B gyrB [Mycobacterium tuberculosis T85]
 gi|289764120|ref|ZP_06523498.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503]
 gi|294995613|ref|ZP_06801304.1| DNA gyrase subunit B [Mycobacterium tuberculosis 210]
 gi|298527403|ref|ZP_07014812.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A]
 gi|308373866|ref|ZP_07433901.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006]
 gi|474435|emb|CAA55486.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|1552558|emb|CAB02426.1| DNA GYRASE (SUBUNIT B) GYRB (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503914|gb|ABQ71723.1| DNA gyrase subunit B [Mycobacterium tuberculosis H37Ra]
 gi|253318423|gb|ACT23026.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 1435]
 gi|289436887|gb|EFD19380.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 605]
 gi|289688303|gb|EFD55791.1| DNA gyrase subunit B [Mycobacterium tuberculosis 02_1987]
 gi|289711626|gb|EFD75642.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis GM 1503]
 gi|289715666|gb|EFD79678.1| subunit B gyrB [Mycobacterium tuberculosis T85]
 gi|298497197|gb|EFI32491.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis 94_M4241A]
 gi|308343895|gb|EFP32746.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu006]
 gi|326905764|gb|EGE52697.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis W-148]
 gi|328456711|gb|AEB02134.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis KZN 4207]
          Length = 714

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 87  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 142

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 143 HAGGKFDSDAYAIS 156


>gi|15839377|ref|NP_334414.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|308232616|ref|ZP_07416630.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001]
 gi|308369281|ref|ZP_07417160.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002]
 gi|308370291|ref|ZP_07420933.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003]
 gi|308371557|ref|ZP_07425301.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004]
 gi|308375038|ref|ZP_07442451.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007]
 gi|308379671|ref|ZP_07487073.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010]
 gi|308380869|ref|ZP_07491290.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011]
 gi|308406291|ref|ZP_07495844.2| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012]
 gi|13879046|gb|AAK44228.1| DNA gyrase subunit B [Mycobacterium tuberculosis CDC1551]
 gi|308213443|gb|EFO72842.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu001]
 gi|308328160|gb|EFP17011.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu002]
 gi|308332534|gb|EFP21385.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu003]
 gi|308336277|gb|EFP25128.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu004]
 gi|308347679|gb|EFP36530.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu007]
 gi|308356307|gb|EFP45158.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu010]
 gi|308360194|gb|EFP49045.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu011]
 gi|308363881|gb|EFP52732.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis SUMu012]
          Length = 686

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 59  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 114

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 115 HAGGKFDSDAYAIS 128


>gi|254233410|ref|ZP_04926736.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C]
 gi|124603203|gb|EAY61478.1| DNA gyrase subunit B gyrB [Mycobacterium tuberculosis C]
          Length = 686

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 18/74 (24%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A  ++ V  V+   GG    ++ D+G G+            ++ M  Q 
Sbjct: 59  EVVDNAVDEAMAGYATTVNVVLLEDGG---VEVADDGRGIPVATHASGIPTVDVVM-TQL 114

Query: 75  HCTSKISDDFSNIH 88
           H   K   D   I 
Sbjct: 115 HAGGKFDSDAYAIS 128


>gi|90424324|ref|YP_532694.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
 gi|90106338|gb|ABD88375.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisB18]
          Length = 685

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +A  G  F  ++DNG G+  +
Sbjct: 78  EVIDNSMDEALAGHATFIEVTLAADG--FLTVSDNGRGIPVD 117


>gi|152965502|ref|YP_001361286.1| DNA topoisomerase IV subunit B [Kineococcus radiotolerans
          SRS30216]
 gi|151360019|gb|ABS03022.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
          SRS30216]
          Length = 693

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D A     SR++ V+   G    ++ D+G G+  +
Sbjct: 48 EIIDNSVDEALGGHCSRIDVVLRRDG--SVEVRDDGRGIPVD 87


>gi|330988757|gb|EGH86860.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 745

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|292486926|ref|YP_003529796.1| DNA topoisomerase IV subunit B [Erwinia amylovora CFBP1430]
 gi|292900680|ref|YP_003540049.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946]
 gi|291200528|emb|CBJ47657.1| topoisomerase IV subunit B [Erwinia amylovora ATCC 49946]
 gi|291552343|emb|CBA19388.1| DNA topoisomerase IV, B subunit [Erwinia amylovora CFBP1430]
 gi|312170996|emb|CBX79255.1| DNA topoisomerase IV, B subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 78/210 (37%), Gaps = 29/210 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHAKRVEVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           +   R H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 90  LIFCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRNAEVYEMAFENGDKV 148

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS- 183
           + ++    V   N GT V+            +F  S +   + ++ +++  A+  P V  
Sbjct: 149 QDLTVTGTVAKRNTGTRVQFW-------PDESFFDSPRFSVSRLSHLLKAKAVLCPGVEI 201

Query: 184 -FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
            F     K+ +             E ++ +
Sbjct: 202 VFKDQLNKTEQSWCYADGLTDYLMEAVNGL 231


>gi|289522154|ref|ZP_06439008.1| sensory transduction histidine kinase [Anaerobaculum
          hydrogeniformans ATCC BAA-1850]
 gi|289503990|gb|EFD25154.1| sensory transduction histidine kinase [Anaerobaculum
          hydrogeniformans ATCC BAA-1850]
          Length = 190

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSR--VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
          ENS  A++ +  +E  I    KS   +++D+G GM  E +        T
Sbjct: 14 ENSAKAKAKKVLIELTIDNRNKSIVLRVSDDGCGMDEEFLRKVEDPFTT 62


>gi|158337618|ref|YP_001518793.1| DNA gyrase subunit B [Acaryochloris marina MBIC11017]
 gi|158307859|gb|ABW29476.1| DNA gyrase, B subunit [Acaryochloris marina MBIC11017]
          Length = 646

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   +   G    ++TD+G G+ ++
Sbjct: 39 VYEVVDNSVDEALAGHCKHIHIYLNEDG--SVRVTDDGRGIPTD 80


>gi|148379032|ref|YP_001253573.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|153933091|ref|YP_001383414.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153934883|ref|YP_001386961.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|148288516|emb|CAL82595.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929135|gb|ABS34635.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152930797|gb|ABS36296.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 468

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F ++ DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGKDKIFIKVEDNGEGIPEEDLPHIFERFYRS 419


>gi|254225050|ref|ZP_04918664.1| sensor kinase citA [Vibrio cholerae V51]
 gi|125622437|gb|EAZ50757.1| sensor kinase citA [Vibrio cholerae V51]
          Length = 565

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 23  PSIAIKELIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
            +  +  L++N+   E++         +  ++   G+    ++ DNG G++++       
Sbjct: 444 LAAVLGNLLDNAF--EATLKNPHSNKTISLLLTDNGEELVIEVADNGIGISADIAQTLFL 501

Query: 74  RHCTSK 79
           +  +SK
Sbjct: 502 KGVSSK 507


>gi|91763096|ref|ZP_01265060.1| hypothetical protein PU1002_00520 [Candidatus Pelagibacter ubique
          HTCC1002]
 gi|91717509|gb|EAS84160.1| hypothetical protein PU1002_00520 [Candidatus Pelagibacter ubique
          HTCC1002]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQ----IT--DNGFGMTSEEIPMAVQRHCTSKISD 82
          E+++NS+ A++  ++       K   +    I   D+G GM+ E +   + +  +++  +
Sbjct: 32 EVLDNSIQAKAQNIKINFNTNIKRRIEYLESIAFGDDGSGMSPETVENCLTQGFSTRY-N 90

Query: 83 DFSNIHTFG 91
          D S I  FG
Sbjct: 91 DRSGIGRFG 99


>gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing
           [Symbiobacterium thermophilum IAM 14863]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+EN++    A   R+       G      + D G G+   ++    +R  
Sbjct: 332 DRLVQVLSNLVENAIKYTPAG-GRITLSARRDGDGVRIAVADTGAGIPQADLGRIFERFY 390


>gi|327406038|ref|YP_004346876.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
          protein [Fluviicola taffensis DSM 16823]
 gi|327321546|gb|AEA46038.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Fluviicola taffensis DSM 16823]
          Length = 634

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 27 IKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+++NS+D        R++  +  G      + D G G+ 
Sbjct: 45 VKEIVDNSVDEFVMGNGKRIDIKVKDG---KVSVRDYGRGIP 83


>gi|326630228|gb|EGE36571.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|323265902|gb|EGA49398.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
          Length = 497

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 396 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 453

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 454 --------RGVGLA 459


>gi|321223176|gb|EFX48246.1| Fumarate respiration sensor kinase protein DcuS [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 192

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 91  LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 148

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 149 --------RGVGLA 154


>gi|229006007|ref|ZP_04163697.1| hypothetical protein bmyco0002_29290 [Bacillus mycoides Rock1-4]
 gi|228755275|gb|EEM04630.1| hypothetical protein bmyco0002_29290 [Bacillus mycoides Rock1-4]
          Length = 447

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRH 75
           I+R    I  L+ N+L   D E + ++  I    + + F I DNG G+   ++P    R+
Sbjct: 342 IQR---VIVNLLNNALIHTDVE-TLIQVRIKQTSRYTVFTIEDNGDGIHKNDLPHIFDRY 397


>gi|289804938|ref|ZP_06535567.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 311

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 224 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 281

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 282 --------RGVGLA 287


>gi|255654982|ref|ZP_05400391.1| sensor histidine kinase [Clostridium difficile QCD-23m63]
          Length = 384

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 30  LIENSLDAESS---RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LI+N+LD  +    ++         +    + D G G+  E+I    +R   SK S D
Sbjct: 284 LIKNALD-NTKENDKITIEWFETTITTIVSVKDTGNGIHVEDIHHIFKRFYRSKFSKD 340


>gi|224369839|ref|YP_002604003.1| putative signal-transducing kinase with PAS/PAC domain
           [Desulfobacterium autotrophicum HRM2]
 gi|223692556|gb|ACN15839.1| putative signal-transducing kinase with PAS/PAC domain
           [Desulfobacterium autotrophicum HRM2]
          Length = 954

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 30  LIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LI+NS+ A S     R+     + G +  F+I DNG G++ E +    +   T K S D
Sbjct: 700 LIQNSIHALSMVEHPRITVRTYSRGNQICFEIEDNGCGISKENLENIYEPSFTLKGSRD 758


>gi|213613250|ref|ZP_03371076.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|213417687|ref|ZP_03350813.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 228

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 127 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 184

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 185 --------RGVGLA 190


>gi|205355073|ref|YP_002228874.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274854|emb|CAR39916.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|168821233|ref|ZP_02833233.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342128|gb|EDZ28892.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088713|emb|CBY98471.1| putative 2-component sensor protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|200387391|ref|ZP_03214003.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|207859458|ref|YP_002246109.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224586068|ref|YP_002639867.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|199604489|gb|EDZ03034.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|206711261|emb|CAR35637.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224470596|gb|ACN48426.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|168467009|ref|ZP_02700857.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195630507|gb|EDX49119.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|168243725|ref|ZP_02668657.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263353|ref|ZP_02685326.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|194444527|ref|YP_002043554.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194448588|ref|YP_002048295.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194403190|gb|ACF63412.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194406892|gb|ACF67111.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337275|gb|EDZ24039.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205348007|gb|EDZ34638.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|204927217|ref|ZP_03218419.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204323882|gb|EDZ09077.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|322615459|gb|EFY12379.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618519|gb|EFY15408.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622068|gb|EFY18918.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627140|gb|EFY23932.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631099|gb|EFY27863.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637682|gb|EFY34383.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642493|gb|EFY39094.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643631|gb|EFY40185.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648296|gb|EFY44756.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653505|gb|EFY49835.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659668|gb|EFY55911.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662122|gb|EFY58338.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666131|gb|EFY62309.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672551|gb|EFY68662.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675980|gb|EFY72051.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680465|gb|EFY76503.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684640|gb|EFY80644.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194620|gb|EFZ79812.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197167|gb|EFZ82307.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201716|gb|EFZ86780.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206230|gb|EFZ91192.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323213240|gb|EFZ98042.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215612|gb|EGA00356.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222034|gb|EGA06420.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227901|gb|EGA12055.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229070|gb|EGA13199.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236319|gb|EGA20395.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237561|gb|EGA21622.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241773|gb|EGA25802.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248079|gb|EGA32016.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323254590|gb|EGA38401.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258351|gb|EGA42028.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259629|gb|EGA43263.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323270344|gb|EGA53792.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|168237016|ref|ZP_02662074.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194734757|ref|YP_002117239.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710259|gb|ACF89480.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289976|gb|EDY29335.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|167552243|ref|ZP_02345996.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205323030|gb|EDZ10869.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|161617451|ref|YP_001591416.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161366815|gb|ABX70583.1| hypothetical protein SPAB_05308 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|62182752|ref|YP_219169.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62130385|gb|AAX68088.1| sensory histidine kinase in two-component retgulatory system with
           DcuR, senses fumarate/C4-dicarboxylate [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322717253|gb|EFZ08824.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|16767554|ref|NP_463169.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167991517|ref|ZP_02572616.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|238912761|ref|ZP_04656598.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|16422866|gb|AAL23128.1| sensory histidine kinase in two-component retgulatory system with
           DcuR [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205330104|gb|EDZ16868.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249402|emb|CBG27266.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996631|gb|ACY91516.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160796|emb|CBW20327.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915405|dbj|BAJ39379.1| sensor kinase DcuS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323132645|gb|ADX20075.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332991119|gb|AEF10102.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|21674180|ref|NP_662245.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
 gi|21647342|gb|AAM72587.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 681

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 30  LIENSL-------DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN+L       D    R+   I  G   +   I DNG G+    +P   +   TS
Sbjct: 311 LLENALQILQQVPD---GRLAITIQRGESVNRILIRDNGPGIPPNILPRIFEPFFTS 364


>gi|16762986|ref|NP_458603.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144473|ref|NP_807815.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163473|ref|ZP_03349183.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427213|ref|ZP_03359963.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649757|ref|ZP_03379810.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289828842|ref|ZP_06546585.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25298489|pir||AH1023 two-component sensor kinase (EC 2.7.3.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505293|emb|CAD09289.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140111|gb|AAO71675.1| two-component sensor kinase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 543

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|86152926|ref|ZP_01071131.1| sensor kinase of two-component regulatory system [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843811|gb|EAQ61021.1| sensor kinase of two-component regulatory system [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 215

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 114 LILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 169


>gi|119773158|ref|YP_925898.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella amazonensis SB2B]
 gi|119765658|gb|ABL98228.1| DNA gyrase subunit B [Shewanella amazonensis SB2B]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 79/249 (31%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I   G     + D+G G+      EE   A +      H
Sbjct: 43  EVVDNSIDEALAGHCSEITITIHVDG--SVSVKDDGRGIPVAIHPEEGVSAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  D+   + + G  G  +  + A+S    LT+           Q    G   + ++
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKKLQLTI---RRDGKVHEQFYTHGVPDAPIK 156

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            V     T  EVR      P+   F  +     +++   +R ++     V       + N
Sbjct: 157 VVGDATKTGTEVRF----WPSEETFSDTL-FHFDILAKRVRELSFLNSGVGIRLVDERDN 211

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           + +  F    G     +  +       N    +                +N G     Y 
Sbjct: 212 KDE--FFKYEGGISAFVEYLNRNKTPVNKDIFHFAQEREDGITVEVAMQWNDGFQENIYC 269

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 270 FTNNIPQRD 278


>gi|330892822|gb|EGH25483.1| sensor histidine kinase [Pseudomonas syringae pv. mori str. 301020]
          Length = 221

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S      I   G+   ++ DNG G+ +E  
Sbjct: 97  TRLEQILVNLIGNALDAMFNQPAPELWLTGS------IED-GRYRLRVRDNGHGIDTETR 149

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 150 KHLFEPFFTTK 160


>gi|330827704|ref|YP_004390656.1| DNA gyrase subunit B [Aeromonas veronii B565]
 gi|328802840|gb|AEB48039.1| DNA gyrase subunit B [Aeromonas veronii B565]
          Length = 803

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+  +
Sbjct: 43 EVVDNSIDEALAGYCSDILVKIHSDG--SVSVRDNGRGIPVD 82


>gi|326798730|ref|YP_004316549.1| integral membrane sensor signal transduction histidine kinase
            [Sphingobacterium sp. 21]
 gi|326549494|gb|ADZ77879.1| integral membrane sensor signal transduction histidine kinase
            [Sphingobacterium sp. 21]
          Length = 1240

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 30   LIENSLDAESSR----VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            LI+N+++A++ R    +   +          I DNG G+  +      Q + T+K
Sbjct: 1146 LIKNAIEAKAGRGKCLIHISVKRNKSLLIIAIKDNGNGIDEQVRDRIFQPNFTTK 1200


>gi|323496930|ref|ZP_08101958.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326]
 gi|323318004|gb|EGA70987.1| DNA gyrase subunit B [Vibrio sinaloensis DSM 21326]
          Length = 805

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I         + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--CSVSVRDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+      + +   +++   +R ++     VS      +     
Sbjct: 159 ETDKTGTEIRF----WPSE-ETFSNTEFHYDILAKRLRELSFLNSGVSIKLRDEREEDKN 213

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +F    G     +  +            +  +             +N G     Y F N
Sbjct: 214 DHFMYEGG-IQAFVEHLNTNKTPIIEKVFHFNAEREDGIAVEVAMQWNDGYQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|296131357|ref|YP_003638607.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
 gi|296023172|gb|ADG76408.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
          Length = 370

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 14/76 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNG 60
           L E +++++       R +  +  L+ N+L    +     V    A  G+     + D G
Sbjct: 253 LPEVLVDRL-------RLAQVLDNLVTNAL--RHTPPGGTVTVGAASAGRDVTLTVRDTG 303

Query: 61  FGMTSEEIPMAVQRHC 76
            G+ +E++P   +R  
Sbjct: 304 EGIAAEDLPHVFERFY 319


>gi|294500086|ref|YP_003563786.1| two-component sensor histidine kinase BceS [Bacillus megaterium QM
           B1551]
 gi|294350023|gb|ADE70352.1| two-component sensor histidine kinase BceS [Bacillus megaterium QM
           B1551]
          Length = 334

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 43  ETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           + +I      G+ + ++ DNG G++ +++P   ++  TS
Sbjct: 240 DVMIRSYEHHGQVYIEVKDNGRGISPQDMPRIFEKGFTS 278


>gi|289624938|ref|ZP_06457892.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650485|ref|ZP_06481828.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330867227|gb|EGH01936.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S      I   G+   ++ DNG G+ +E  
Sbjct: 519 TRLEQILVNLIGNALDAMFNQPAPELWLTGS------IED-GRYRLRVRDNGHGIDTETR 571

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 572 KHLFEPFFTTK 582


>gi|257486605|ref|ZP_05640646.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|330989511|gb|EGH87614.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331010087|gb|EGH90143.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 641

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S      I   G+   ++ DNG G+ +E  
Sbjct: 519 TRLEQILVNLIGNALDAMFNQPAPELWLTGS------IED-GRYRLRVRDNGHGIDTETR 571

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 572 KHLFEPFFTTK 582


>gi|257482887|ref|ZP_05636928.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331012393|gb|EGH92449.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 745

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|218262691|ref|ZP_03477049.1| hypothetical protein PRABACTJOHN_02728 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223242|gb|EEC95892.1| hypothetical protein PRABACTJOHN_02728 [Parabacteroides johnsonii
           DSM 18315]
          Length = 925

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 30  LIENS----LDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           L+ N+    LD     +   +   G      + DNG G+  E I     R  T
Sbjct: 539 LLSNAFKFTLDGG--TITVRLKDKGDQVELSVEDNGKGIPLENIASVFDRFFT 589


>gi|195978128|ref|YP_002123372.1| TCS senso kinase BceS [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974833|gb|ACG62359.1| TCS senso kinase BceS [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            ++  I  G      I+DNG G+  E++P   +   T
Sbjct: 234 HIKISIKEG---SIFISDNGIGILEEDLPRLFEEGFT 267


>gi|145297128|ref|YP_001139969.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida
          A449]
 gi|142849900|gb|ABO88221.1| DNA gyrase subunit B [Aeromonas salmonicida subsp. salmonicida
          A449]
          Length = 804

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I   G     + DNG G+  +
Sbjct: 43 EVVDNSIDEALAGYCSDILVKIHSDG--SVSVRDNGRGIPVD 82


>gi|106734149|gb|ABF82551.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + DNG G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKATIEPG--NSILVEDNGQGIPVD 44


>gi|71737952|ref|YP_276043.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71558505|gb|AAZ37716.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 643

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S      I   G+   ++ DNG G+ +E  
Sbjct: 519 TRLEQILVNLIGNALDAMFNQPAPELWLTGS------IED-GRYRLRVRDNGHGIDTETR 571

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 572 KHLFEPFFTTK 582


>gi|313884999|ref|ZP_07818751.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619690|gb|EFR31127.1| DNA topoisomerase IV, B subunit [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 691

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   +     ++  +   G    ++TDNG GM 
Sbjct: 43 VYEIVDNSVDEALSGYCDAIKVELLKDG--SIRVTDNGRGMP 82


>gi|302348020|ref|YP_003815658.1| Type 2 DNA topoisomerase 6 subunit B [Acidilobus saccharovorans
           345-15]
 gi|302328432|gb|ADL18627.1| Type 2 DNA topoisomerase 6 subunit B [Acidilobus saccharovorans
           345-15]
          Length = 556

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 27  IKELIENSLDA-ESSRV--ETVI----------AGGGKSFFQITDNGFGMTSEEIPMAV 72
           ++EL+EN+LDA +S  +  E  I              +    + DNG G+    +  A 
Sbjct: 43  VRELVENALDATDSHGILPEVKIYIKEVEPENEERPARYEVSVEDNGIGVPKTVMAQAF 101


>gi|227506136|ref|ZP_03936185.1| two-component system sensor kinase TcsS4 [Corynebacterium striatum
           ATCC 6940]
 gi|227197243|gb|EEI77291.1| two-component system sensor kinase TcsS4 [Corynebacterium striatum
           ATCC 6940]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDGEGIPPDQLRYIFERFY 315


>gi|227502287|ref|ZP_03932336.1| two-component system sensor kinase [Corynebacterium accolens ATCC
           49725]
 gi|227076977|gb|EEI14940.1| two-component system sensor kinase [Corynebacterium accolens ATCC
           49725]
          Length = 375

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDGEGIPPDQLRYIFERFY 315


>gi|193215359|ref|YP_001996558.1| signal transduction histidine kinase with CheB and CheR activity
            [Chloroherpeton thalassium ATCC 35110]
 gi|193088836|gb|ACF14111.1| signal transduction histidine kinase with CheB and CheR activity
            [Chloroherpeton thalassium ATCC 35110]
          Length = 1366

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 30   LIENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
            L+EN++   DA   ++       G    F I+DNG G+  E +         SK+ D
Sbjct: 1267 LLENAIKYNDASQPKISISAKKAGSVYEFSISDNGVGIGQENLKHVFDLF--SKVID 1321


>gi|149371431|ref|ZP_01890917.1| periplasmic sensor signal transduction histidine kinase
           [unidentified eubacterium SCB49]
 gi|149355569|gb|EDM44128.1| periplasmic sensor signal transduction histidine kinase
           [unidentified eubacterium SCB49]
          Length = 896

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           R+E     G  +    +TDNG G+ +E+I     +   S
Sbjct: 810 RIEIDYKLGNNALEISVTDNGKGIPAEDIAYVFDKFYQS 848


>gi|120553605|ref|YP_957956.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120323454|gb|ABM17769.1| Two-component sensor kinase CbrA [Marinobacter aquaeolei VT8]
          Length = 987

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESS--RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R       L+ N+ DA      +       G S   ++ D G G+ ++++    +   T
Sbjct: 864 QRLVQVFINLLANARDASPDGGTIRVAGKADGYSAIIEVIDEGSGIPADQLDHIFEPFYT 923

Query: 78  SK 79
           +K
Sbjct: 924 TK 925


>gi|332662395|ref|YP_004445183.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
 gi|332331209|gb|AEE48310.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
          Length = 1361

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 5/22 (22%), Positives = 15/22 (68%)

Query: 54   FQITDNGFGMTSEEIPMAVQRH 75
             ++ D+G G+  +++P+  +R+
Sbjct: 989  IEVEDSGSGIHPDDLPLVFERY 1010


>gi|313897463|ref|ZP_07831006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
 gi|312957833|gb|EFR39458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
          Length = 406

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 24  SIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           S  +  L+ N++   D     +       G  +  Q+ D G G+ +E++     R  
Sbjct: 303 SQVVLNLLSNAIKYSDRG--TITLKTREEGSWYVLQVRDEGHGIVAEDLEKIFDRFY 357


>gi|283956867|ref|ZP_06374340.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791593|gb|EFC30389.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 403

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 302 LILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 357


>gi|239627111|ref|ZP_04670142.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517257|gb|EEQ57123.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 345

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
            ++ D G G+  E++    +R   S+ S D   I 
Sbjct: 272 IKVEDTGCGIHPEDLHHIFKRFYRSRFSQDTQGIG 306


>gi|224536597|ref|ZP_03677136.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521853|gb|EEF90958.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1364

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 40   SRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHC 76
              +   ++ G         ++DNG G++ E +     R  
Sbjct: 982  KTIRVNVSYGSSKREIIISVSDNGEGISKENLSKLFNRFY 1021


>gi|110679404|ref|YP_682411.1| sensory box histidine kinase, putative [Roseobacter denitrificans
           OCh 114]
 gi|109455520|gb|ABG31725.1| sensory box histidine kinase, putative [Roseobacter denitrificans
           OCh 114]
          Length = 350

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENS-------LDAESSRVETV-IAGGGKS 52
           M+I  L   I       E+  R  + + EL+ N+       +D     +    ++ GG  
Sbjct: 237 MQIEPLEVSI-------EVATRVGLVVSELLTNAFQHAFERMDTGLVEIRMSQLSAGGLR 289

Query: 53  FFQITDNGFGMTSE 66
              ++D+G G+   
Sbjct: 290 LI-VSDDGIGIPRS 302


>gi|330505035|ref|YP_004381904.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919321|gb|AEB60152.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 644

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 33  NSLDA------ES-SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N++DA       + S+V    +   G    ++ D G G++ E++        TSK
Sbjct: 538 NAIDANRERHPGAPSQVRLEASEADGSLAIRVIDQGPGVSDEQMAKLFTPFYTSK 592


>gi|325287883|ref|YP_004263673.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Cellulophaga lytica DSM 7489]
 gi|324323337|gb|ADY30802.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Cellulophaga lytica DSM 7489]
          Length = 618

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 70/245 (28%), Gaps = 37/245 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++N +D     A    +E  I        ++ D G G+   ++   V +  T    
Sbjct: 46  LKEVLDNCIDEFVMGAG-KTIEINIKDN---LVKVRDYGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -SKI---SDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            SK    S   + + T      A+ ++     +   SR  Q+        +         
Sbjct: 102 DSKAFKKSVGLNGVGTK-----AVNALSNFFKVE-SSREGQSKWAEFSQGNLVAEEGPVD 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K+ +     +  +++      P ++       + +
Sbjct: 156 SSKRKGTKVSFT-------PDETIFKNYKYRNEYVVRMLKNYVYLNPGLTIVFNGEKYFS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
               +  +   +   +    I  + G+D          + +E       G          
Sbjct: 209 ENGLKDLLEDNNNVEDLLYPIIHLKGDDIEIAITHSKTQYSEEYQSFVNG--QHTTQGGT 266

Query: 249 QFYVF 253
               F
Sbjct: 267 HQSAF 271


>gi|304312518|ref|YP_003812116.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium
          HdN1]
 gi|301798251|emb|CBL46473.1| Gram negative topoisomerase IV, subunit B [gamma proteobacterium
          HdN1]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++ V  ++   G    +I+DNG GM  +
Sbjct: 31 TRPNHLAQEVIDNSVDEALAGHANTVSVILHPDG--SMEISDNGRGMPVD 78


>gi|266624194|ref|ZP_06117129.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288863972|gb|EFC96270.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 344

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 26  AIKELIENSLDAESS---RVETVIA------GGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
            I++L+ N+L  + +   R+   +        GG      + D G G+  E+IP   ++ 
Sbjct: 232 VIEQLLSNAL--KYTERGRITIRLEEERETENGGELRTLIVEDTGRGIAPEDIPRVFEKG 289

Query: 76  CT 77
            T
Sbjct: 290 YT 291


>gi|262199074|ref|YP_003270283.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262082421|gb|ACY18390.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 786

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           G  +   + D+G G+  E +    +   TSK +D
Sbjct: 575 GNYAVLTVADDGPGIPPENLERIFEPFYTSKSTD 608


>gi|257439008|ref|ZP_05614763.1| two-component sensor histidine kinase [Faecalibacterium prausnitzii
           A2-165]
 gi|257198593|gb|EEU96877.1| two-component sensor histidine kinase [Faecalibacterium prausnitzii
           A2-165]
          Length = 512

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 22  RPSIAIKELIENSLD---AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR--H 75
           R    ++ L+ N++    A  S +        G +   + D G G+  E+      R  H
Sbjct: 405 RLQQILQNLLTNAIHYTPAGGS-ITVSSRVEAGAALVSVRDTGCGIAPEDQAAVFDRYFH 463

Query: 76  CT--SK---------ISDDFSNIHTFGFRGEAL 97
            T  SK         I+ + +++H     GE L
Sbjct: 464 TTTSSKHDSTGLGLTIAQELAHLH----HGEIL 492


>gi|227494193|ref|ZP_03924509.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
          15436]
 gi|226831927|gb|EEH64310.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
          15436]
          Length = 671

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +E  I   G     + DNG G+  +
Sbjct: 48 VYEVVDNAVDEALAGYCDHIEVTIREDGA--VTVVDNGRGIPVD 89


>gi|218894062|ref|YP_002442931.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58]
 gi|218774290|emb|CAW30107.1| topoisomerase IV subunit B [Pseudomonas aeruginosa LESB58]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM      EE    +
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   +
Sbjct: 87  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFANGFK 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                    +           +        +  S +   + +  V++  A+  P +S  F
Sbjct: 146 DSDLEVIGTVGKRNTGTSVHFW----PDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVF 201

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                                 + ++++
Sbjct: 202 EDKNTGERVEWHFEDGLRSYLTDAVAEL 229


>gi|207111941|ref|ZP_03246103.1| hypothetical protein HpylH_22959 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 35

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 485 IKAERFGPNAIAIREIPAILSKKNIPQLLRDIIDE 519
            + E FG    A+R +P  L   +  +LL ++ID+
Sbjct: 1   FEIEHFGREEYAVRAVPDNLFGIDKKRLLMEMIDD 35


>gi|218440839|ref|YP_002379168.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173567|gb|ACK72300.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 436

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHC---TSKISD 82
            Q+ DNG G+ ++++P   +R     T K  D
Sbjct: 363 IQVKDNGDGIPADDLPYIFERFYRVNTKKKRD 394


>gi|15617081|ref|NP_240294.1| heat shock protein 90 [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219681833|ref|YP_002468219.1| heat shock protein 90 [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471537|ref|ZP_05635536.1| heat shock protein 90 [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|11386816|sp|P57555|HTPG_BUCAI RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|25295987|pir||D84986 heat shock protein htpG [imported] - Buchnera sp. (strain APS)
 gi|10039146|dbj|BAB13180.1| heat shock protein htpG [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624676|gb|ACL30831.1| heat shock protein 90 [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 624

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 77/594 (12%), Positives = 174/594 (29%), Gaps = 94/594 (15%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE----IPMAVQ 73
           E I  P     EL EN  D++  +++  I    ++   I+DNG GMT E+    +    +
Sbjct: 51  ESISSP-----ELYEN--DSD-VKIQISINKAQRTLI-ISDNGIGMTKEDTIENLGTIAK 101

Query: 74  RHCTSKI---------SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI 123
               S +          ++       GF      S   VS  +++ +R     +   I  
Sbjct: 102 SGTKSFLQSLEQKQNKKNELIGEFGVGF-----YSSFIVSEKVSVRTRFAGLESNKGILW 156

Query: 124 SGE---KISSVRPVAMNPGTIVEVRDLFFTIPA----RLNFLKSEQVETNLITDVIRRMA 176
                 + +    V    GT + +             R+  + S+  +   I   I+   
Sbjct: 157 ESSGEGEYNITNIVKKTRGTEITLFLKKEEEEFLETWRIKNIISKYSDHITIPIHIQDYD 216

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                  +         + +N  S      +   + +  D  +  +  +        Q Y
Sbjct: 217 KKNKTYFWEQINKAKALWTLNKSSITEEEYKDFYKHLTNDQNDPLIWSHNHVE--GNQEY 274

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL------GRYPVVVLLLEI 290
             +       A   +   N   ++       I       +P       G      L L I
Sbjct: 275 ISLLYIPEKAAWDIWNRDNKHGLKLYVKRVYIMDNSQAFLPNYLRFIKGLIDSSDLPLNI 334

Query: 291 DPRQVDVNVHPAKSYIRF------------RNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
               +  N    K                 +                + +        L+
Sbjct: 335 SREILQDNSITEKLRKSLIKKSLSMLEKLAQKNNEKYQIFWNQFGLVLKEGPAEDHENLN 394

Query: 339 K-----KMISSFHQDNAPKTHLPKYATSLTNTQEKL-FLQENRLSTNDLLPSDDPTYSED 392
           K     +  S    ++  K  L +Y +++   QEK+ ++  +  S+ +  P  +     +
Sbjct: 395 KIANLLRFTSMKSNNSEQKMSLKEYISNMNEQQEKIYYITADSYSSANNSPHLELFKKNN 454

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL---------IFEKM 443
            D +  S+     +    ++       S + + + +       E+          + E +
Sbjct: 455 IDVLLLSDRIDEWMMNYLSEFEGKKFQSISKEDISL--NKLTKEKKIKNKDVSTEMIEFL 512

Query: 444 RQD-----FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG---------IKAER 489
           ++           +     LT     LL     +  +  +     G          +   
Sbjct: 513 KKVKNILGNQVKDVRLTHRLTETPCVLLSDSTEMTTQMAKLFSAAGQSVPELKYIFEI-- 570

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDE--IIDSS---TTYTLQDRIENILA 538
             P+ I I++I  I ++  + Q ++ ++D+  + +       +    R+  +L 
Sbjct: 571 -NPDHILIKKICTINNENELHQWIKLLLDQALLAEKGNLENPHKFISRMNKLLI 623


>gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE
 gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 589

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L    A  S  +       G     I D+G G+  E++P   +R  
Sbjct: 489 LIDNALRHTSAGGSVSISVHSVKDGLK-IDIKDSGSGIPEEDLPFIFERFY 538


>gi|332284681|ref|YP_004416592.1| DNA topoisomerase IV subunit B [Pusillimonas sp. T7-7]
 gi|330428634|gb|AEC19968.1| DNA topoisomerase IV subunit B [Pusillimonas sp. T7-7]
          Length = 640

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P   ++E+I+N+ D   A   + ++  +   G     + D+G G+      EE    +
Sbjct: 18 DNPLHIVQEVIDNAADEALAGFGTSIKVTLHTDG--SVSVEDDGRGIPVGLHPEEHAPVV 75

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 76 ELVFTRLHA 84


>gi|325961456|ref|YP_004239362.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467543|gb|ADX71228.1| DNA gyrase subunit B [Arthrobacter phenanthrenivorans Sphe3]
          Length = 695

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A   + +E V+   GG     + D+G G+  +
Sbjct: 67  VYEVVDNSVDEALAGYCTHIEVVLQADGGVK---VVDDGRGIPVD 108


>gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 589

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L    A  S  +       G     I D+G G+  E++P   +R  
Sbjct: 489 LIDNALRHTSAGGSVSISVHSVKDGLK-IDIKDSGSGIPEEDLPFIFERFY 538


>gi|308447343|ref|XP_003087405.1| hypothetical protein CRE_12456 [Caenorhabditis remanei]
 gi|308256863|gb|EFP00816.1| hypothetical protein CRE_12456 [Caenorhabditis remanei]
          Length = 822

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 29/139 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I         + DNG G+      EE   A +      H
Sbjct: 56  EVVDNAIDEALAGHCDEILVTIHED--ESVSVADNGRGIPTDIHPEEGVSAAEVILTILH 113

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L     +     Q         
Sbjct: 114 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----KLELT--IHRAGHIHQQEYKHGDPV 165

Query: 130 SVRPVAMNPGTIVEVRDLF 148
               +  +  T   +   +
Sbjct: 166 YPLKIVGDVETTGTIVRFW 184


>gi|302185661|ref|ZP_07262334.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
          Length = 635

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGG-----KSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA S + +  +   G     +   ++ DNG G+ +E      +  
Sbjct: 519 TRLEQILVNLIGNALDAMSDQQQPEVWLAGSVVDGRYRLRVRDNGHGVDAEARKHLFEPF 578

Query: 76  CTSK 79
            T+K
Sbjct: 579 FTTK 582


>gi|302770609|ref|XP_002968723.1| hypothetical protein SELMODRAFT_91078 [Selaginella
          moellendorffii]
 gi|300163228|gb|EFJ29839.1| hypothetical protein SELMODRAFT_91078 [Selaginella
          moellendorffii]
          Length = 391

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 26 AIKELIENSLD-A--ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          AI EL++N++D A   ++ ++         G      + DNG GM+ E+I   +    + 
Sbjct: 26 AIAELLDNAIDEANNGATFIKIDKVTNFRDGSPGLLFL-DNGGGMSPEKIRQCMSFGYSQ 84

Query: 79 KISDDFSNIHTFG 91
          K ++    I  +G
Sbjct: 85 KCAN---AIGQYG 94


>gi|302817871|ref|XP_002990610.1| hypothetical protein SELMODRAFT_131980 [Selaginella
          moellendorffii]
 gi|300141532|gb|EFJ08242.1| hypothetical protein SELMODRAFT_131980 [Selaginella
          moellendorffii]
          Length = 394

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 11/73 (15%)

Query: 26 AIKELIENSLD-A--ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          AI EL++N++D A   ++ ++         G      + DNG GM+ E+I   +    + 
Sbjct: 29 AIAELLDNAIDEANNGATFIKIDKVTNFRDGSPGLLFL-DNGGGMSPEKIRQCMSFGYSQ 87

Query: 79 KISDDFSNIHTFG 91
          K ++    I  +G
Sbjct: 88 KCAN---AIGQYG 97


>gi|294341637|emb|CAZ90054.1| putative two-component sensor kinase [Thiomonas sp. 3As]
          Length = 767

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 18/73 (24%)

Query: 18  EIIERPSIAIKELIENSLDAES----SRVETVIAG----GGKSF---FQITDNGFGMTSE 66
           ++I         L++N++DA +     +V           G +      ++DNG G + +
Sbjct: 644 QVIHN-------LLQNAIDAVAAQPERKVRIRTEALPTPSGAALRVRLSVSDNGPGFSDK 696

Query: 67  EIPMAVQRHCTSK 79
            +  A + + TSK
Sbjct: 697 ILNRAFEPYVTSK 709


>gi|284047394|ref|YP_003397733.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951615|gb|ADB46418.1| DNA gyrase, B subunit [Acidaminococcus fermentans DSM 20731]
          Length = 646

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A     +  +I     +   +TDNG G+  E
Sbjct: 52 VYEVIDNSIDEALAGYCDHIRVIIHPD--NSITVTDNGRGIPVE 93


>gi|312193902|ref|YP_004013963.1| DNA gyrase, B subunit [Frankia sp. EuI1c]
 gi|311225238|gb|ADP78093.1| DNA gyrase, B subunit [Frankia sp. EuI1c]
          Length = 646

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   + A GG    ++ DNG G+ 
Sbjct: 37 VSEVVDNSVDEALAGFCDTITVTLLADGG---VRVVDNGRGIP 76


>gi|296137331|ref|YP_003644573.1| multi-sensor signal transduction histidine kinase [Thiomonas
           intermedia K12]
 gi|295797453|gb|ADG32243.1| multi-sensor signal transduction histidine kinase [Thiomonas
           intermedia K12]
          Length = 767

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 18/73 (24%)

Query: 18  EIIERPSIAIKELIENSLDAES----SRVETVIAG----GGKSF---FQITDNGFGMTSE 66
           ++I         L++N++DA +     +V           G +      ++DNG G + +
Sbjct: 644 QVIHN-------LLQNAIDAVAAQPERKVRIRTEALPTPSGAALRVRLSVSDNGPGFSDK 696

Query: 67  EIPMAVQRHCTSK 79
            +  A + + TSK
Sbjct: 697 ILNRAFEPYVTSK 709


>gi|194015646|ref|ZP_03054262.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
 gi|194013050|gb|EDW22616.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
          Length = 471

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    ++ L++N++      +S  +E ++    K+  ++TD G G+  E++P   +R  
Sbjct: 354 DRLQQVVRNLLDNAIHYTPSGKSVSIELLVHQH-KAELRVTDEGNGIPKEDLPHVSERFY 412


>gi|189485008|ref|YP_001955949.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
 gi|170286967|dbj|BAG13488.1| DNA gyrase subunit B [uncultured Termite group 1 bacterium
          phylotype Rs-D17]
          Length = 830

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  +     +   + D+G G+  +
Sbjct: 50 VYEVVDNSIDEVLAGYCKNIDVTVHSD--NSITVLDDGRGIPVD 91


>gi|108758718|ref|YP_635093.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462598|gb|ABF87783.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 436

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 23  PSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  ++ L++N+L A   S  VE  +   G+    ++ D G GM ++ +  A +   T+K
Sbjct: 330 LARVLRGLVKNALQASQVSRPVELRVQARGEGALLEVRDAGTGMAADVLSRAGEPFFTTK 389


>gi|92118760|ref|YP_578489.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91801654|gb|ABE64029.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14]
          Length = 465

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 30  LIENSL--DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+EN+L    E + +E ++   G     + DNG G+   +     QR 
Sbjct: 359 LVENALHHTPEGTAIEIIVGPDG--SISVIDNGDGVPLADREAIFQRF 404


>gi|16124493|ref|NP_419057.1| sensor histidine kinase [Caulobacter crescentus CB15]
 gi|221233177|ref|YP_002515613.1| two-component sensor histidine kinase chvG [Caulobacter crescentus
           NA1000]
 gi|13421367|gb|AAK22225.1| sensor histidine kinase [Caulobacter crescentus CB15]
 gi|220962349|gb|ACL93705.1| two-component sensor histidine kinase chvG [Caulobacter crescentus
           NA1000]
          Length = 534

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 56  ITDNGFGMTSEEIPMAVQRHCTS 78
           + D+G GM  E +    +R  TS
Sbjct: 457 VEDDGPGMPPENLETIFERFYTS 479


>gi|53713329|ref|YP_099321.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
 gi|52216194|dbj|BAD48787.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 30  LIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ + +++ +     ++ G + + +I DNG G+  E +        T+K
Sbjct: 346 LIKNARENDATAIRISAGLSSGERPYIRIEDNGTGIEQEVLDRIFIPFFTTK 397


>gi|42521654|ref|NP_967034.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100]
 gi|39574184|emb|CAE77688.1| DNA gyrase subunit B [Bdellovibrio bacteriovorus HD100]
          Length = 806

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A    ++   I         + D+G G+ 
Sbjct: 43 VYEIVDNSVDEHLAGYCKKISVSINAD--ESITVEDDGRGIP 82


>gi|332999781|gb|EGK19365.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-272]
 gi|333015649|gb|EGK34988.1| DNA topoisomerase IV, B subunit [Shigella flexneri K-227]
          Length = 630

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHVD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  + +  R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGTCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|327542614|gb|EGF29087.1| DNA gyrase subunit B [Rhodopirellula baltica WH47]
          Length = 637

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 29 ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +S +   +   G     ++DNG G+  +
Sbjct: 44 EIVDNSVDEAMNGHASEITVTLHKDG-ETVSVSDNGRGIPVD 84


>gi|291540715|emb|CBL13826.1| Molecular chaperone, HSP90 family [Roseburia intestinalis XB6B4]
          Length = 823

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 19/65 (29%)

Query: 27  IKELIENSLDA------ESSR------------VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI+NS+DA       +++            +  ++    +    + DNG GM+ + +
Sbjct: 346 LRELIQNSIDACKTMEESATKMEKFRYQNYQPYISVILDKD-RKKVMVMDNGSGMSIDIL 404

Query: 69  PMAVQ 73
                
Sbjct: 405 KKYFL 409


>gi|281424568|ref|ZP_06255481.1| heat shock protein HtpG [Prevotella oris F0302]
 gi|281401405|gb|EFB32236.1| heat shock protein HtpG [Prevotella oris F0302]
          Length = 684

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 35/127 (27%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++E++ N++DA                    +V   +    K+   I+DNG GMT EEI 
Sbjct: 29  LREMVSNAVDATQKLKTLAEKGDFKGELGELKVSIKLDEAAKT-ITISDNGIGMTEEEID 87

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  D+ + I      GF      S   VS  + +++R   + + 
Sbjct: 88  KYINQIAFSGVSDFLDKYKDNANAIIGHFGLGF-----YSSFMVSDRVDIITRSYKEGSK 142

Query: 118 GAQIAIS 124
             +    
Sbjct: 143 AVKWTCD 149


>gi|262277739|ref|ZP_06055532.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114]
 gi|262224842|gb|EEY75301.1| DNA gyrase, B subunit [alpha proteobacterium HIMB114]
          Length = 834

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 13/57 (22%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          E+++N++D   A     +   I     +   ++DNG G+        V+ H T KIS
Sbjct: 48 EVVDNAIDEALAGHCDTIVVKINKD--NSVSVSDNGRGIP-------VEIHKTEKIS 95


>gi|228913686|ref|ZP_04077313.1| hypothetical protein bthur0012_9250 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845974|gb|EEM90998.1| hypothetical protein bthur0012_9250 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 425

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)

Query: 6   LSEKIINQIAAGE-IIERPSIAIKELIENSL---DAESSRVETVIAGG-GKSFFQITDNG 60
           L E+II  I A + +I+R   AI  L+ N+L   D   + ++  I    G +   I DNG
Sbjct: 307 LQEEII--IKADQGLIQR---AIVNLLNNALIHTD-NKTLIQVCIKQTIGYTIVTIEDNG 360

Query: 61  FGMTSEEIPMAVQRH 75
            G+   ++P    R+
Sbjct: 361 EGINKSDLPHIFDRY 375


>gi|261856651|ref|YP_003263934.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
 gi|261837120|gb|ACX96887.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
          Length = 653

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 16/73 (21%)

Query: 12  NQIAAGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSE 66
           NQI  G+++         L+ N++   +S     +         SF  ++ DNG G+  E
Sbjct: 540 NQI--GQVVLN-------LVRNAI--HASPPMGEITITARSKPDSFEIEVLDNGKGIEPE 588

Query: 67  EIPMAVQRHCTSK 79
            +        T+K
Sbjct: 589 ALDKVFDPFFTTK 601


>gi|254302374|ref|ZP_04969732.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322566|gb|EDK87816.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 635

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 79/207 (38%), Gaps = 29/207 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------EIPMAVQR 74
           E+++NS+D   A    ++E  I        ++ DNG G+ ++          EI + V  
Sbjct: 39  EIVDNSVDEALAGYCDKIEVKILPDNI--IEVVDNGRGIPTDIHPKYGKSALEIVLTVL- 95

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  +D   + + G  G  +  + A+S  L +  R        +      +      
Sbjct: 96  HAGGKFENDNYKV-SGGLHGVGVSVVNALSEWLEVEVRKAGVIHYQKYHRGKPEEDVKII 154

Query: 134 VAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK 190
            + +    GTIV  +       A     ++       +++ ++ +A     ++ T S ++
Sbjct: 155 GSCDENEHGTIVRFK-------ADGEIFETLIYNYFTLSNRLKELAYLNKGLTITLSDLR 207

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDF 217
            +  K      +G   + +++++ ED 
Sbjct: 208 KDEKKEETYKFDGGILDFLNEIVKEDT 234


>gi|50379847|gb|AAT76294.1| DNA gyrase subunit B [Fusobacterium canifelinum]
          Length = 522

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   +++E  I    ++  ++ DNG G+ ++
Sbjct: 43 EIVDNSVDEALAGYCNKIEVKILS--ENIIEVVDNGRGIPTD 82


>gi|32472532|ref|NP_865526.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
 gi|32443768|emb|CAD73210.1| DNA gyrase subunit B [Rhodopirellula baltica SH 1]
          Length = 637

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 29 ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A    +S +   +   G     ++DNG G+  +
Sbjct: 44 EIVDNSVDEAMNGHASEITVTLHKDG-ETVSVSDNGRGIPVD 84


>gi|326335208|ref|ZP_08201404.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
          oral taxon 338 str. F0234]
 gi|325692616|gb|EGD34559.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
          oral taxon 338 str. F0234]
          Length = 656

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 44 VYEVLDNSIDEALAGYCDTISVFINPD--NSITVEDNGRGIPVD 85


>gi|325267976|ref|ZP_08134624.1| sensor histidine kinase [Kingella denitrificans ATCC 33394]
 gi|324980579|gb|EGC16243.1| sensor histidine kinase [Kingella denitrificans ATCC 33394]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 27  IKELIENSLD---AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IK L++N++    A S +++             + DNG G+++ E    ++   
Sbjct: 338 IKTLVDNAVSYTPAGS-QIDLSAEETENAWLIHVEDNGCGISAAERERVLEPFY 390


>gi|325273899|ref|ZP_08140068.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100955|gb|EGB98632.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 277

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 21/95 (22%)

Query: 2  KIRK-LSEKIINQIAAGEIIERPS---IAIKELIENSLDAESS--RVET----------- 44
          +I+  L       IA    +  P     A+  L+ N+ DA +   R+             
Sbjct: 5  RIQLTLDLSTHPAIA----LVDPVQLESAVLNLVINARDALAKGGRIWVNTAATWSQGNP 60

Query: 45 VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +A G      + DNG G+  E +        T+K
Sbjct: 61 DLADGHYIAVNVRDNGSGIEPELLEKVFDPFFTTK 95


>gi|323450751|gb|EGB06631.1| hypothetical protein AURANDRAFT_29093 [Aureococcus anophagefferens]
          Length = 698

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  +++V   +   G     + D+G G+  +
Sbjct: 74  EILDNSIDEVMAGHATKVAVELRADG--SCAVGDDGRGIPCD 113


>gi|298291347|ref|YP_003693286.1| DNA topoisomerase IV subunit beta [Starkeya novella DSM 506]
 gi|296927858|gb|ADH88667.1| DNA topoisomerase IV, B subunit [Starkeya novella DSM 506]
          Length = 680

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+N +D   A  +S ++  +   G  F  +TDNG G+  E+ P 
Sbjct: 74  EVIDNCMDEAVAGHASFIDVELTEDG--FLAVTDNGRGIPIEDHPK 117


>gi|288555008|ref|YP_003426943.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546168|gb|ADC50051.1| two-component sensor histidine kinase controlling resistance to
           antibiotics versus cell wall (BceS) [Bacillus
           pseudofirmus OF4]
          Length = 335

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 14  IAAGEIIER---PSIAIKELIENSL---DAESSRVETVIAGG---GKSFFQITDNGFGMT 64
           +A+ E++      +  +++L+ N++   +  S   E  I      G+    + DNG G+ 
Sbjct: 209 LASSEVLTDAKWLAFILRQLLTNAVKYSEEGS---EIRIQSSVQKGQKILTVADNGRGIG 265

Query: 65  SEEIPMAVQRHCTS 78
             ++     +  TS
Sbjct: 266 PRDLSRIFDKGFTS 279


>gi|269118926|ref|YP_003307103.1| histidine kinase [Sebaldella termitidis ATCC 33386]
 gi|268612804|gb|ACZ07172.1| histidine kinase [Sebaldella termitidis ATCC 33386]
          Length = 432

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 26  AIKELIENSLDAESSR--VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
            +K LIEN+L   S +  +   I     S+  +I+DNG G+  EE     ++  
Sbjct: 330 VMKNLIENALIYSSKKPEINIEILEDENSYIFKISDNGLGIPEEERDKIFEKFY 383


>gi|291612475|ref|YP_003522632.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1]
 gi|291582587|gb|ADE10245.1| DNA gyrase, B subunit [Sideroxydans lithotrophicus ES-1]
          Length = 809

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A     ++ +I   G +   ++DNG G+ 
Sbjct: 42 EVVDNAIDEALAGHCDDIKVIIH--GDNSISVSDNGRGIP 79


>gi|190572096|ref|YP_001969941.1| DNA gyrase subunit B [Stenotrophomonas maltophilia K279a]
 gi|190010018|emb|CAQ43623.1| putative DNA gyrase subunit B [Stenotrophomonas maltophilia
          K279a]
          Length = 819

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  V   I   G     ++DNG G+ 
Sbjct: 51 EVVDNSIDEALAGHADHVAVTIHADG--SVSVSDNGRGIP 88


>gi|285016825|ref|YP_003374536.1| DNA topoisomerase II (DNA gyrase subunit b) protein [Xanthomonas
          albilineans GPE PC73]
 gi|166362463|gb|ABY87167.1| DNA gyrase B [Xanthomonas albilineans]
 gi|283472043|emb|CBA14550.1| probable dna topoisomerase II (dna gyrase subunit b) protein
          [Xanthomonas albilineans]
          Length = 820

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  V   I   G     ++DNG G+ 
Sbjct: 51 EVVDNSIDEALAGHADHVAVTIHADG--SVSVSDNGRGIP 88


>gi|241206252|ref|YP_002977348.1| CheA signal transduction histidine kinase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860142|gb|ACS57809.1| CheA signal transduction histidine kinase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 679

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLDAE--------------SSRVETVIAG-GGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D                +  V       GG+    I D+G G
Sbjct: 391 TVIERLADPLVHLVRNSIDHGLETPADRLASGKTEAGTVTLSARQAGGEVIISIKDDGRG 450

Query: 63  MTSE 66
           +  E
Sbjct: 451 INRE 454


>gi|194363782|ref|YP_002026392.1| DNA gyrase subunit B [Stenotrophomonas maltophilia R551-3]
 gi|194346586|gb|ACF49709.1| DNA gyrase, B subunit [Stenotrophomonas maltophilia R551-3]
          Length = 819

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  V   I   G     ++DNG G+ 
Sbjct: 51 EVVDNSIDEALAGHADHVAVTIHADG--SVSVSDNGRGIP 88


>gi|108809114|ref|YP_653030.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua]
 gi|167399281|ref|ZP_02304805.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|108781027|gb|ABG15085.1| DNA topoisomerase IV subunit B [Yersinia pestis Antiqua]
 gi|167051785|gb|EDR63193.1| DNA topoisomerase IV, B subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 631

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 22  RPSIAIKELIENSLD---AESSR-VETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  +R ++ ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHTRRIDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  R              + 
Sbjct: 90  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDSQIYSIAFENGDKV 148

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--FT 185
                               +      ++F  S +   + ++ +++  A+  P V   F 
Sbjct: 149 QDLQVIGTCGKRNTGTSVHFW----PDVSFFDSPRFSVSRLSHLLKAKAVLCPGVEIVFK 204

Query: 186 FSTIKSNRYKMNFQSTNGNFPERI 209
                + +             E +
Sbjct: 205 DQVNNTEQRWCYADGLTDYLMEAV 228


>gi|315657693|ref|ZP_07910575.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492165|gb|EFU81774.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 686

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A     +E  +   GG    ++ DNG G+   E P
Sbjct: 57  VYEVVDNSVDESLAGYCDHIEVTLQADGG---VRVADNGRGIPVAEHP 101


>gi|315654385|ref|ZP_07907293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
 gi|315491420|gb|EFU81037.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           ATCC 51333]
          Length = 686

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A     +E  +   GG    ++ DNG G+   E P
Sbjct: 57  VYEVVDNSVDESLAGYCDHIEVTLQADGG---VRVADNGRGIPVAEHP 101


>gi|289431959|ref|YP_003461832.1| DNA gyrase subunit beta [Dehalococcoides sp. GT]
 gi|288945679|gb|ADC73376.1| DNA gyrase, B subunit [Dehalococcoides sp. GT]
          Length = 642

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 14/67 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + E++ NS+D   A    R++ ++   G     + DNG G+        V  H T+KIS 
Sbjct: 50  VYEIVYNSVDEAMAGVCDRIKVIMFKDG--SVSVEDNGRGIP-------VGIHSTTKISA 100

Query: 83  DFSNIHT 89
               + T
Sbjct: 101 -LETVMT 106


>gi|298345811|ref|YP_003718498.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390485|ref|ZP_07372438.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235872|gb|ADI67004.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326241|gb|EFL93486.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 686

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           + E+++NS+D   A     +E  +   GG    ++ DNG G+   E P
Sbjct: 57  VYEVVDNSVDESLAGYCDHIEVTLQADGG---VRVADNGRGIPVAEHP 101


>gi|251796350|ref|YP_003011081.1| anti-sigma regulatory factor, serine/threonine protein kinase
           [Paenibacillus sp. JDR-2]
 gi|247543976|gb|ACT00995.1| anti-sigma regulatory factor, serine/threonine protein kinase
           [Paenibacillus sp. JDR-2]
          Length = 147

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSL----DAE-SSRVETVIA-GGGKSFFQITD 58
           +L   +       E +     A+ E + NS+    D++ + +V    +  G      I D
Sbjct: 30  QLDPTL-------EELNDLKTAVSEAVTNSIIHGYDSDPAGKVTIEASIDGDVVSIAIWD 82

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
           NG G+  E++ +A Q   TSK
Sbjct: 83  NGRGI--EDLELARQPLFTSK 101


>gi|144899999|emb|CAM76863.1| signal transduction histidine kinase) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 177

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 42  VETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQ 73
           +   +   G  +   ++DNG G+ +EE   A +
Sbjct: 87  ITVSVEQAGAGWIVDVSDNGVGIAAEERERAFE 119


>gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 594

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N++   D   + ++   +   G     +TD G G+  E++P   +R  
Sbjct: 482 DRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENGVK-IDVTDTGTGIPEEDLPYVFERFY 540


>gi|114561192|ref|YP_748705.1| DNA gyrase, B subunit [Shewanella frigidimarina NCIMB 400]
 gi|114332485|gb|ABI69867.1| DNA gyrase subunit B [Shewanella frigidimarina NCIMB 400]
          Length = 805

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCSDITISIHSDG--SVSVKDDGRGIP 80


>gi|332703196|ref|ZP_08423284.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553345|gb|EGJ50389.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 585

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+  A S      +       G     ++D+G G++  +     +   T+K
Sbjct: 473 LINNAFQAMSDGGHLAIAISPEPNGGLSVAVSDDGCGISETDQKRIFEPFYTTK 526


>gi|326917489|ref|XP_003205031.1| PREDICTED: structural maintenance of chromosomes flexible hinge
           domain-containing protein 1-like [Meleagris gallopavo]
          Length = 1974

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDAESSR-----VETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A +       ++  +      GK    + DNG GMTS+++
Sbjct: 87  ELIDNSLSATARNTDIRSIQIKLLFDDSNGKPAVAVIDNGRGMTSKQL 134


>gi|319896804|ref|YP_004134998.1| sensor protein qsec [Haemophilus influenzae F3031]
 gi|317432307|emb|CBY80660.1| sensor protein QseC [Haemophilus influenzae F3031]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|320108482|ref|YP_004184072.1| DNA gyrase subunit B [Terriglobus saanensis SP1PR4]
 gi|319927003|gb|ADV84078.1| DNA gyrase, B subunit [Terriglobus saanensis SP1PR4]
          Length = 877

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++R++  I     +   + D+G G+  +
Sbjct: 63  VYEVVDNSVDEALAGHATRIDVTIHVD--NSVTVVDDGRGIPVD 104


>gi|302384682|ref|YP_003820504.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302195310|gb|ADL02881.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 472

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 12/48 (25%)

Query: 43  ETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNI 87
           E  I  G   GK +  I DNG GM  EE+         SKI + F  +
Sbjct: 380 EITIETGCKEGKVWISIRDNGIGMPKEEL---------SKIREAFYRV 418


>gi|301170462|emb|CBW30069.1| sensory histidine kinase in two-component regulatory system with
           QseB [Haemophilus influenzae 10810]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|300726757|ref|ZP_07060187.1| sensor histidine kinase [Prevotella bryantii B14]
 gi|299775870|gb|EFI72450.1| sensor histidine kinase [Prevotella bryantii B14]
          Length = 390

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 26  AIKELIENSLDA-----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA        ++   I         ++ D G G+  ++I    +   T+K
Sbjct: 290 VIENLCKNAVDAMGGEKG--QITLRIEEMTDKVAIEVIDTGKGIRKKDIENVFRPGFTTK 347


>gi|258647973|ref|ZP_05735442.1| sensor histidine kinase [Prevotella tannerae ATCC 51259]
 gi|260851814|gb|EEX71683.1| sensor histidine kinase [Prevotella tannerae ATCC 51259]
          Length = 403

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA      +   +     +    ++D G G+  +      +   T+K
Sbjct: 303 VIENLCKNAIDAMSGVGEINIGVTERDKRITILVSDTGKGIAKKNFKNVFKPGFTTK 359


>gi|229847328|ref|ZP_04467430.1| sensor protein QseC [Haemophilus influenzae 7P49H1]
 gi|229809753|gb|EEP45477.1| sensor protein QseC [Haemophilus influenzae 7P49H1]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|296120721|ref|YP_003628499.1| DNA topoisomerase type IIsubunit alpha B region 2 domain protein
          [Planctomyces limnophilus DSM 3776]
 gi|296013061|gb|ADG66300.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Planctomyces limnophilus DSM 3776]
          Length = 824

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  ++ V   I   G     I D+G G+ 
Sbjct: 51 EVVDNSIDEAVAGYATWVSVKINVDG--SVSIIDDGRGIP 88


>gi|228954943|ref|ZP_04116961.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804764|gb|EEM51365.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 484

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  L+ NS+   D E  ++   ++    K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLVHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|261343462|ref|ZP_05971107.1| phosphoglycerate transport system sensor protein PgtB [Providencia
           rustigianii DSM 4541]
 gi|282568610|gb|EFB74145.1| phosphoglycerate transport system sensor protein PgtB [Providencia
           rustigianii DSM 4541]
          Length = 668

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 30  LIENSLDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA  +  E  I     G      I+DNG G         ++   TSK
Sbjct: 571 LLANALDASPTEAEITIDHSENGNILELTISDNGKGWPLHLADTLMKPFTTSK 623


>gi|188581319|ref|YP_001924764.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179344817|gb|ACB80229.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 762

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 17  GEIIER----PSIAIKELIENSLD---AESSR---VETVIAGGG-KSFFQITDNGFGMTS 65
           G +++      +  +  L+ N++    A +     +   +A  G     ++ D+G G+  
Sbjct: 626 GIVVDTYPGVLAQIVTNLVANAVVHGFAGAQTPGTITVRVASTGALVRLEVGDDGSGIAP 685

Query: 66  EEIPMAVQRHCT 77
           E +        T
Sbjct: 686 ENLGRIFDPFFT 697


>gi|171911994|ref|ZP_02927464.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 422

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 33/95 (34%)

Query: 15  AAGEIIERPSIAI--KE---------------------------LIENSLDAE-SSRVET 44
            A +++ R S  I  KE                           L+ N+L    +  +E 
Sbjct: 256 CAQDVVHRLSPVIQSKEACVTLDMEEGSAVISGDRYYWDQILFNLVSNALKENLAKGLEV 315

Query: 45  VIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           VI        S  Q+ DNG G+   ++P   +R  
Sbjct: 316 VIRLRQEVESSEIQVRDNGVGIPHADLPFVFKRFY 350


>gi|162449198|ref|YP_001611566.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159780|emb|CAN91085.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 779

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 22/79 (27%)

Query: 22  RPSIAIKELIENSLDA------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R +  +  L+ N+  A       + RV         +  ++ DNG G++ E +P      
Sbjct: 528 RLTQVVSNLLHNA--AKFTPPRGAIRVTVEADDA-HAILRVRDNGVGISPELLPQVF--- 581

Query: 76  CTSKISDDFSNIHTFGFRG 94
                  D     T G RG
Sbjct: 582 -------DLF---TQGDRG 590


>gi|160936130|ref|ZP_02083503.1| hypothetical protein CLOBOL_01026 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440940|gb|EDP18664.1| hypothetical protein CLOBOL_01026 [Clostridium bolteae ATCC
          BAA-613]
          Length = 185

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS  A +S V  ++       K    I DNG GMT E+         T
Sbjct: 14 ENSTRAGASLVTILVTADTSADKLTIVIADNGCGMTPEQAAHVTDPFFT 62


>gi|160892781|ref|ZP_02073571.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50]
 gi|156865822|gb|EDO59253.1| hypothetical protein CLOL250_00312 [Clostridium sp. L2-50]
          Length = 634

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 32/199 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---------SEEIPMAVQ 73
           I+ELI+NS+D   A     +   I   G +   ++D+G G+            E  +   
Sbjct: 37  IQELIDNSVDEHLAGYCKNIYVSINEDGSA--TVSDDGRGVPVDIHETEGIPAERVVYTV 94

Query: 74  RHC-------TSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGE 126
            H        T KIS     + +          + A+S   L+               G 
Sbjct: 95  LHAGGKFNSSTYKISGGLHGVGS--------AVVNALSKKLLVEVARDGYLYTDSYEYGV 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIP--ARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
            ++ + P    P T ++ +     +         ++ + + + I   I+  A   P+++ 
Sbjct: 147 PVTELTPEGNLPRTRLKEKRTGTKVTLYPDDTIFETVKFKADAIMQRIKETAYLNPELTI 206

Query: 185 TFSTIKSNRYKMNFQSTNG 203
           TF   +  +  + F    G
Sbjct: 207 TFHNKRDGKEPVVFHQPGG 225


>gi|148827130|ref|YP_001291883.1| sensor protein QseC [Haemophilus influenzae PittGG]
 gi|148718372|gb|ABQ99499.1| sensor protein QseC [Haemophilus influenzae PittGG]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|118086848|ref|XP_001233442.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 493

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDAESSR-----VETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A +       ++  +      GK    + DNG GMTS+++
Sbjct: 318 ELIDNSLSATARNTSIRSIQIKLLFDDSNGKPAVAVIDNGRGMTSKQL 365


>gi|219847489|ref|YP_002461922.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541748|gb|ACL23486.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 527

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 15  AAGEII---ERPSIAIKELIENSLDAESS----RVETVIAGGGKS-FFQITDNGFGMTSE 66
           A G +I   +R    +  LI+N+L    +     +       GK     + D G G+T E
Sbjct: 408 ARGTVIADPDRLRQILLILIDNAL--RYTPTGGTITLNAELAGKQVRISVRDTGCGITPE 465

Query: 67  EIPMAVQRHC 76
            +P   +R  
Sbjct: 466 HLPHLFERFY 475


>gi|68250310|ref|YP_249422.1| sensor protein QseC [Haemophilus influenzae 86-028NP]
 gi|145633642|ref|ZP_01789369.1| sensor protein QseC [Haemophilus influenzae 3655]
 gi|148825750|ref|YP_001290503.1| sensor protein QseC [Haemophilus influenzae PittEE]
 gi|68058509|gb|AAX88762.1| sensor protein QseC [Haemophilus influenzae 86-028NP]
 gi|144985519|gb|EDJ92335.1| sensor protein QseC [Haemophilus influenzae 3655]
 gi|148715910|gb|ABQ98120.1| sensor protein QseC [Haemophilus influenzae PittEE]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|56962169|ref|YP_173892.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56908404|dbj|BAD62931.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 442

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            G  +   I DNG G++ E++P   +R  
Sbjct: 358 EGNYALISIQDNGIGISKEDLPNIFERFY 386


>gi|16273594|ref|NP_439849.1| sensor protein QseC [Haemophilus influenzae Rd KW20]
 gi|260581048|ref|ZP_05848870.1| sensor protein qseC [Haemophilus influenzae RdAW]
 gi|1176111|sp|P45336|QSEC_HAEIN RecName: Full=Sensor protein qseC
 gi|1574561|gb|AAC23353.1| sensor protein (ygiY) [Haemophilus influenzae Rd KW20]
 gi|260092288|gb|EEW76229.1| sensor protein qseC [Haemophilus influenzae RdAW]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|145629193|ref|ZP_01784992.1| sensor protein QseC [Haemophilus influenzae 22.1-21]
 gi|145639136|ref|ZP_01794743.1| sensor protein QseC [Haemophilus influenzae PittII]
 gi|144978696|gb|EDJ88419.1| sensor protein QseC [Haemophilus influenzae 22.1-21]
 gi|145271698|gb|EDK11608.1| sensor protein QseC [Haemophilus influenzae PittII]
 gi|309750717|gb|ADO80701.1| Probable two-component regulator, sensory histidine kinase
           component QseC [Haemophilus influenzae R2866]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|330813294|ref|YP_004357533.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486389|gb|AEA80794.1| DNA gyrase subunit B [Candidatus Pelagibacter sp. IMCC9063]
          Length = 696

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S+++  I     +   ++DNG G+  +
Sbjct: 51 EVVDNSIDEALAGHCSKIDVFINAD--NTVTVSDNGRGIPVD 90


>gi|307243405|ref|ZP_07525562.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493215|gb|EFM65211.1| DNA gyrase, B subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 635

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S +   I   G     + D+G G+  E
Sbjct: 40 VYEVVDNSIDEALAGNCSEIYISINPDG--SVTVKDDGRGIPVE 81


>gi|253689069|ref|YP_003018259.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755647|gb|ACT13723.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 399

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 21  ERPSIAIKELIENSLDAESS-----RVETV----IAGGGKSFFQITDNGFGMTSEEIPMA 71
           ER       LIEN+L + +S      ++                ++D+G G+  E +P+ 
Sbjct: 285 ERLGQVFSILIENAL-SYASDGRYLAIDVRETTLRENAPCWQITVSDHGPGIEPESLPLL 343

Query: 72  VQRH 75
             R 
Sbjct: 344 FDRF 347


>gi|167565399|ref|ZP_02358315.1| sensor histidine kinase [Burkholderia oklahomensis EO147]
          Length = 490

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 30  LIENSL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++    D  +  +   I   G  +  ++ D+G G+   E     +R   S
Sbjct: 365 LIDNAIRYAGD-GA-VITVRIVRDGDFARLEVIDDGPGIAPGERDAVFERFYRS 416


>gi|152986866|ref|YP_001351015.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PA7]
 gi|150962024|gb|ABR84049.1| DNA topoisomerase IV, B subunit [Pseudomonas aeruginosa PA7]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM      EE    +
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   +
Sbjct: 87  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFK 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                    +           +        +  S +   + +  V++  A+  P +S  F
Sbjct: 146 DTDLEVIGTVGRRNTGTSVHFW----PDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVF 201

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                                 + ++++
Sbjct: 202 EDKNTGERVEWHFEDGLRSYLTDAVAEL 229


>gi|76801461|ref|YP_326469.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76557326|emb|CAI48902.1| signal-transducing histidine kinase; probable GAF, PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 884

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 16/57 (28%)

Query: 22  RPSIAIKELIENSLDAESS--------RVETVIAGG--GKSFFQITDNGFGMTSEEI 68
           R ++ I+EL+EN++              VE  +     G +   + D+G G+  EE+
Sbjct: 773 RLAVVIEELVENAV-----EHVPHEQPTVEVTVTEAADGAA-ISVIDDGPGIPEEEL 823


>gi|330810071|ref|YP_004354533.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378179|gb|AEA69529.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 436

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 19  II-ERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           +I  RP      +  L++N+L    ++++   IA  G+   QI D G G+  +E+   ++
Sbjct: 323 VIDTRPHALRRVLVNLVDNALKFGGAAQIHVQIADNGQLAIQILDRGPGINEQELAEVLK 382

Query: 74  RHC 76
              
Sbjct: 383 PFY 385


>gi|307298739|ref|ZP_07578542.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915904|gb|EFN46288.1| DNA gyrase, B subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 631

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A      R+  VI   G     ++DNG G+  +
Sbjct: 39 VYEIVDNSIDEAMGGFCDRINIVITEDG--SVIVSDNGRGIPID 80


>gi|304404379|ref|ZP_07386040.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346186|gb|EFM12019.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 699

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 25  IAIKELIENSL--------DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
             I  LI N+L        D    R+       G  +  ++ D G G+  E++P    R 
Sbjct: 590 QVISNLIYNALRYLPDGEPD---QRIYIDAYESGEVAIIEVRDTGSGIDPEDLPHIFDRF 646

Query: 76  C 76
            
Sbjct: 647 Y 647


>gi|299143458|ref|ZP_07036538.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298517943|gb|EFI41682.1| DNA gyrase, B subunit [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 639

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   ++DNG G+ +E
Sbjct: 43 VYEVVDNSIDEALAGICDHILVEIYED--NSVSVSDNGSGIPTE 84


>gi|294665318|ref|ZP_06730610.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292604911|gb|EFF48270.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 651

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G     ++ DNG G+ +  + 
Sbjct: 395 LENVVLNLVINARDALKGQGNIRIQSAAYTAHNDPELDDGDYVAVKVIDNGSGIEAAILD 454

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 455 QVFEPFFTTKPIGEGTGLGLSMTYGF 480


>gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
 gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
          Length = 428

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 40  SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           S +   +          I D+G G+  E++P    R  
Sbjct: 334 SHINISVTEEYKHISITIEDDGEGIPPEDLPHIFDRFY 371


>gi|162450951|ref|YP_001613318.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161533|emb|CAN92838.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 700

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 19/64 (29%)

Query: 21  ERPSIAIKELIENS---LDAESS---RVETVIAGG-------------GKSFFQITDNGF 61
            R +  +  L++N+    DA +S   RV   +  G             G++   + DNG 
Sbjct: 424 TRLAQMLGNLLQNAGKFTDAGASGGGRVGVRVEAGPRPRAPGREGGVSGQAVITVEDNGV 483

Query: 62  GMTS 65
           GM  
Sbjct: 484 GMDP 487


>gi|145635436|ref|ZP_01791137.1| sensor protein QseC [Haemophilus influenzae PittAA]
 gi|145267310|gb|EDK07313.1| sensor protein QseC [Haemophilus influenzae PittAA]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|145631585|ref|ZP_01787351.1| sensor protein QseC [Haemophilus influenzae R3021]
 gi|144982785|gb|EDJ90311.1| sensor protein QseC [Haemophilus influenzae R3021]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|126667865|ref|ZP_01738831.1| sensory box histidine kinase [Marinobacter sp. ELB17]
 gi|126627681|gb|EAZ98312.1| sensory box histidine kinase [Marinobacter sp. ELB17]
          Length = 509

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 30  LIENSLDAE---------SSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+ N+++A          +S +   I     G++  ++TD G G+ +  I    Q   TS
Sbjct: 392 LVRNAIEANVEARVDASSASAITLTIRANDLGETLVEVTDQGPGLNANGIRQMFQPFYTS 451

Query: 79  K 79
           K
Sbjct: 452 K 452


>gi|124485243|ref|YP_001029859.1| DNA topoisomerase VI subunit B [Methanocorpusculum labreanum Z]
 gi|124362784|gb|ABN06592.1| DNA topoisomerase VI, B subunit [Methanocorpusculum labreanum Z]
          Length = 600

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 41/188 (21%)

Query: 27  IKELIENSLDA--ESS---RVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR-HCTS 78
           IKE I+NSLDA  E+     +   +       F++   DNG G+  E++P    +    S
Sbjct: 40  IKEAIDNSLDACEEAQVLPDILVSVRRVSNDVFRVVVEDNGPGIVPEKMPSVFAKLLYGS 99

Query: 79  KISDDFSNIHTFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISGEKI-- 128
           +         T G +G  +    AV  + LT      + SR    N    +++  +    
Sbjct: 100 RFH---QVRQTRGQQGIGIS--AAVLYAQLTTGKPTIVTSRTDAKNKAHTMSLVIKTETN 154

Query: 129 ------SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKV 182
                        +  GT V++              KS       + + ++  +I  P  
Sbjct: 155 EPEVLSHEEVDWILPHGTRVQLE------------FKSNIAARKKLIEYLKYTSIVNPHA 202

Query: 183 SFTFSTIK 190
            F      
Sbjct: 203 KFRVEIED 210


>gi|154247858|ref|YP_001418816.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154161943|gb|ABS69159.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 667

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA       R+E      G      + DNG G++   +    +   
Sbjct: 555 RLEQVLVNLISNAMDALTGNGEPRIEITAGRDGAWAVIDVVDNGHGLSHTVMDRLFEPFF 614

Query: 77  TSKISDDF 84
           T+K +   
Sbjct: 615 TTKKTSGL 622


>gi|108802861|ref|YP_642798.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
 gi|108764104|gb|ABG02986.1| DNA gyrase subunit B [Rubrobacter xylanophilus DSM 9941]
          Length = 644

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   +     +   ++D+G GM 
Sbjct: 50 EIVDNSIDEALAGYCTEISVTVHPD--NSVTVSDDGRGMP 87


>gi|330957855|gb|EGH58115.1| sensor histidine kinase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 585

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     + R+E  I     +    ++D G G+  E +        
Sbjct: 477 RLEQVLINLLRNALDAMRDCSTRRLEVRIDALDAQWRLSVSDTGTGIAPENLARIFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|325283469|ref|YP_004256010.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus
          MRP]
 gi|324315278|gb|ADY26393.1| DNA topoisomerase (ATP-hydrolyzing) [Deinococcus proteolyticus
          MRP]
          Length = 655

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A  ++ +   +   G +   +TDNG G+  +
Sbjct: 45 EIIDNAIDEGLAGFANEITVTMHEDGSA--TVTDNGRGIPVD 84


>gi|293384948|ref|ZP_06630783.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|293389219|ref|ZP_06633681.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|312905938|ref|ZP_07764951.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 512]
 gi|312909284|ref|ZP_07768140.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 516]
 gi|291077766|gb|EFE15130.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|291081383|gb|EFE18346.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|310627933|gb|EFQ11216.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 512]
 gi|311290308|gb|EFQ68864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis DAPTO 516]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 404 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 450


>gi|225870542|ref|YP_002746489.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047]
 gi|225699946|emb|CAW93892.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047]
          Length = 325

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            ++  I  G      I+DNG G+  E++P   +   T
Sbjct: 234 HIKVSIKEG---SIFISDNGIGILEEDLPRLFEEGFT 267


>gi|229816230|ref|ZP_04446540.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM
          13280]
 gi|229808238|gb|EEP44030.1| hypothetical protein COLINT_03280 [Collinsella intestinalis DSM
          13280]
          Length = 674

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +E  +     +   + DNG G+  +
Sbjct: 43 EIVDNSVDEAMAGFCSSIEVTVHPD--NSITVVDNGRGIPVD 82


>gi|168056555|ref|XP_001780285.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668339|gb|EDQ54949.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 640

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +S V+ VI   G     I+DNG G+ ++
Sbjct: 30 VYEVLDNAIDEAQAGFASTVDVVIHTDG--SVSISDNGRGIPTD 71


>gi|156932596|ref|YP_001436512.1| DNA topoisomerase IV subunit B [Cronobacter sakazakii ATCC BAA-894]
 gi|156530850|gb|ABU75676.1| hypothetical protein ESA_00378 [Cronobacter sakazakii ATCC BAA-894]
          Length = 630

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 23/207 (11%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    + 
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHARRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAVE 88

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H   K S+      + G  G  +  + A+S  + +  +              + 
Sbjct: 89  LILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVKRDGQIYNIAFENGEKV 147

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSFT 185
                               +        F  S +   + +T +++  A+  P  +++F 
Sbjct: 148 KELSVVGTCPKRQTGTSVHFW----PDEKFFDSPRFSVSRLTHLLKAKAVLCPGVEINFK 203

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQV 212
                + +        N    E ++ +
Sbjct: 204 DQVNNTEQRWCYQDGLNDYLSEAVNGL 230


>gi|145637648|ref|ZP_01793303.1| sensor protein QseC [Haemophilus influenzae PittHH]
 gi|145269171|gb|EDK09119.1| sensor protein QseC [Haemophilus influenzae PittHH]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|118470492|ref|YP_889550.1| two-component sensor kinase [Mycobacterium smegmatis str. MC2 155]
 gi|118171779|gb|ABK72675.1| two-component sensor kinase [Mycobacterium smegmatis str. MC2 155]
          Length = 527

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 30  LIENSLDAESSR----VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++DA   R    +E  + +   +    + D+G GM  +    A QR  ++K
Sbjct: 425 LIDNAMDA-CDRDDPWIEVTVTSDDDQLLITVADSGPGMDPDTFEKATQRGYSTK 478


>gi|158319065|ref|YP_001511572.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139264|gb|ABW17576.1| DNA gyrase, B subunit [Alkaliphilus oremlandii OhILAs]
          Length = 636

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A       +   I        ++ DNG G+  +
Sbjct: 43 VYEVVDNSIDEALGGYCDTILVTIKED--DSIEVIDNGRGIPVD 84


>gi|15602235|ref|NP_245307.1| DNA topoisomerase IV subunit B [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|12720616|gb|AAK02454.1| ParE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 632

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  ++++E V+        ++ DNG GM  +
Sbjct: 30 TRPNHLGQEVIDNSVDEALAGYANKIEVVLHKD--QSLEVIDNGRGMPVD 77


>gi|331007621|ref|ZP_08330763.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989]
 gi|330418561|gb|EGG93085.1| DNA gyrase subunit B [gamma proteobacterium IMCC1989]
          Length = 780

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S ++ +I         ++DNG G+ +E
Sbjct: 18 EIVDNSIDEALAGHCSEIKVIIHPD--ESVSVSDNGRGIPTE 57


>gi|313202138|ref|YP_004040796.1| histidine kinase [Methylovorus sp. MP688]
 gi|312441454|gb|ADQ85560.1| histidine kinase [Methylovorus sp. MP688]
          Length = 471

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 30  LIENSL---DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++   D    RV   +     G     + D+G G+  +E     +R  
Sbjct: 365 LVDNAIRYSDEG-GRVTVSLTRDDQGF-VLSVEDDGPGIPEDEREKVFERFH 414


>gi|218134381|ref|ZP_03463185.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC
          43243]
 gi|217989766|gb|EEC55777.1| hypothetical protein BACPEC_02275 [Bacteroides pectinophilus ATCC
          43243]
          Length = 638

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A   + ++ +I     +   +TDNG G+  +
Sbjct: 38 VYEIVDNAVDEALAGYCTEIDVLINKD--NSITVTDNGRGVPVD 79


>gi|163869044|ref|YP_001610278.1| hypothetical protein Btr_2262 [Bartonella tribocorum CIP 105476]
 gi|161018725|emb|CAK02283.1| hypothetical protein BT_2262 [Bartonella tribocorum CIP 105476]
          Length = 639

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 16/67 (23%)

Query: 19 IIERPSI------AIKELIENSLDAESSRVETVIAGGGKS----------FFQITDNGFG 62
          II   S        +KE I NS+ A +++++ ++     +             + DNG G
Sbjct: 8  IIRDLSSKTNIFTVLKESIVNSIQAHATKIDILLQLYSSNPDLWGNQQVFSISVFDNGDG 67

Query: 63 MTSEEIP 69
           T+E I 
Sbjct: 68 FTTENIK 74


>gi|254974556|ref|ZP_05271028.1| sensor histidine kinase [Clostridium difficile QCD-66c26]
 gi|255091945|ref|ZP_05321423.1| sensor histidine kinase [Clostridium difficile CIP 107932]
 gi|255313679|ref|ZP_05355262.1| sensor histidine kinase [Clostridium difficile QCD-76w55]
 gi|255516363|ref|ZP_05384039.1| sensor histidine kinase [Clostridium difficile QCD-97b34]
 gi|255649463|ref|ZP_05396365.1| sensor histidine kinase [Clostridium difficile QCD-37x79]
 gi|260682629|ref|YP_003213914.1| sensor protein [Clostridium difficile CD196]
 gi|260686229|ref|YP_003217362.1| sensor protein [Clostridium difficile R20291]
 gi|306519540|ref|ZP_07405887.1| sensor protein [Clostridium difficile QCD-32g58]
 gi|260208792|emb|CBA61678.1| sensor protein [Clostridium difficile CD196]
 gi|260212245|emb|CBE02966.1| sensor protein [Clostridium difficile R20291]
          Length = 413

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 30  LIENSLDAESS---RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LI+N+LD  +    ++         +    + D G G+  E+I    +R   SK S D
Sbjct: 313 LIKNALD-NTKENDKITIEWFETTITTIVSVKDTGNGIHVEDIHHIFKRFYRSKFSKD 369


>gi|19909689|dbj|BAB87040.1| DNA gyrase subunit B [Halorubrum saccharovorum]
          Length = 594

 Score = 42.3 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   ++D+G G+  +
Sbjct: 11 VYEVVDNSIDEALAGYCDEITVTIHDD--NSVSVSDDGRGIPVD 52


>gi|325265831|ref|ZP_08132517.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans
          ATCC 33394]
 gi|324982469|gb|EGC18095.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Kingella denitrificans
          ATCC 33394]
          Length = 661

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++R++  I   G     + DNG G+ 
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATRIDVEIHADG--SLSVRDNGRGIP 77


>gi|319785711|ref|YP_004145186.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464223|gb|ADV25955.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 347

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-GGGKS----------FFQITDNGFGMTSEEIP 69
           +R + A+  L+ N+L A ++ +        G S            +I D+G G+  E   
Sbjct: 230 DRLAQAVWNLVNNALQAGATTIILRTRFEHGLSIREHMHARALRVEIVDDGRGVPEELAE 289

Query: 70  MAVQR 74
                
Sbjct: 290 HLFLP 294


>gi|294143009|ref|YP_003558987.1| sensor histidine kinase [Shewanella violacea DSS12]
 gi|293329478|dbj|BAJ04209.1| sensor histidine kinase [Shewanella violacea DSS12]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 30  LIENSLD-AE--SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L++N++  A   ++     I   GK   QI DNG G+ SE      +R
Sbjct: 350 LVDNAIKYAGEGAT---IEIVQEGKE-IQIRDNGPGIPSEAQEKVFER 393


>gi|291513744|emb|CBK62954.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Alistipes shahii WAL 8301]
          Length = 626

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           IKE+++NS+D     A   +++  +A        + D G G+  + +  AV
Sbjct: 54  IKEVVDNSIDEFIMGAG-RQIDITLADN---VVTVRDYGRGIPLKSLAAAV 100


>gi|271961616|ref|YP_003335812.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504791|gb|ACZ83069.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
          43021]
          Length = 647

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  + R+E  + A  G    ++ DNG G+ 
Sbjct: 37 VYEVVDNSVDEALAGHADRIEVTLLADNG---VRVVDNGRGIP 76


>gi|254000174|ref|YP_003052237.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253986853|gb|ACT51710.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 471

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 30  LIENSL---DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++   D    RV   +     G     + D+G G+  +E     +R  
Sbjct: 365 LVDNAIRYSDEG-GRVTVSLTRDDQGF-VLSVEDDGPGIPEDEREKVFERFH 414


>gi|237799175|ref|ZP_04587636.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022030|gb|EGI02087.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 577

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 471 ERLFQVLSNLIGNAI--KFTPKQGRIGVAAMSNGSEIVFTVIDSGEGIPPEQLPHIFERY 528

Query: 76  CTSK 79
            T K
Sbjct: 529 WTVK 532


>gi|158422633|ref|YP_001523925.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571]
 gi|158329522|dbj|BAF87007.1| DNA gyrase B subunit [Azorhizobium caulinodans ORS 571]
          Length = 808

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     +TD+G G+ 
Sbjct: 48 VYEVVDNAIDEALAGHAKEVTVTLNADG--SVTVTDDGRGIP 87


>gi|49473721|ref|YP_031763.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
 gi|49239224|emb|CAF25544.1| DNA gyrase subunit B [Bartonella quintana str. Toulouse]
          Length = 810

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 49 VYEVVDNAIDEALAGHATLVNVTLHTDG--SCSVRDNGRGIPTD 90


>gi|23978280|dbj|BAC21124.1| DNA gyrase B subunit [Leptolyngbya sp. PCC 7375]
          Length = 396

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   +   G     +TD+G G+ ++
Sbjct: 10 VYEVVDNSVDEALAGYCKTITIDLNADG--SVTVTDDGRGIPTD 51


>gi|134291304|ref|YP_001115073.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134493|gb|ABO58818.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 745

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRH 75
           R S  +  L+ N+  A+ +     +      G  G +  ++ DNG G+  + +    +  
Sbjct: 479 RLSQVVANLLTNA--AKYTLPGGDIAVHAQRGADGSTLIEVHDNGAGIPPDRLQSIFEPF 536

Query: 76  C 76
            
Sbjct: 537 Y 537


>gi|330973560|gb|EGH73626.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 745

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +     +       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKMGTIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 571

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI N++    D+    V   I     ++   ++DNG G+  +E     +R  
Sbjct: 470 LINNAVVYTQDSG--EVTVTIRKENNQAVILVSDNGIGIPEDEQDRIFERFY 519


>gi|320095864|ref|ZP_08027496.1| sensor histidine kinase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977201|gb|EFW08912.1| sensor histidine kinase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 558

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 20  IERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           IER    ++ L+ N+++ A+ S V   IA  G     ++ D G GM  E       R   
Sbjct: 437 IER---VLRNLVVNAIEHADGSDVVITIAQSGTEVAVRVRDGGVGMDEETAAHVFDRFY- 492

Query: 78  SKISDDFSNIHTFGFRGEALPSIG 101
                D +   T G  G  L  I 
Sbjct: 493 ---RADTARARTTGGTGLGLA-IA 512


>gi|302188257|ref|ZP_07264930.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae 642]
          Length = 745

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +     +       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKMGTIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|304309656|ref|YP_003809254.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium
          HdN1]
 gi|301795389|emb|CBL43587.1| DNA gyrase (topoisomerase II) B subunit [gamma proteobacterium
          HdN1]
          Length = 807

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 47 EVVDNSIDEALAGFCKEITVTIHQD--ETITVCDDGRGIPVD 86


>gi|296449730|ref|ZP_06891500.1| sensor histidine kinase [Clostridium difficile NAP08]
 gi|296877953|ref|ZP_06901972.1| sensor histidine kinase [Clostridium difficile NAP07]
 gi|296261454|gb|EFH08279.1| sensor histidine kinase [Clostridium difficile NAP08]
 gi|296431021|gb|EFH16849.1| sensor histidine kinase [Clostridium difficile NAP07]
          Length = 413

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 30  LIENSLDAESS---RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LI+N+LD  +    ++         +    + D G G+  E+I    +R   SK S D
Sbjct: 313 LIKNALD-NTKENDKITIEWFETTITTIVSVKDTGNGIHVEDIHHIFKRFYRSKFSKD 369


>gi|283778750|ref|YP_003369505.1| DNA topoisomerase VI subunit B [Pirellula staleyi DSM 6068]
 gi|283437203|gb|ADB15645.1| DNA topoisomerase VI, B subunit [Pirellula staleyi DSM 6068]
          Length = 670

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 27  IKELIENSLD----AESS-RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAV 72
           +KE ++NSLD    A  +  +   +A  G +     + DNG G+  ++IP+  
Sbjct: 56  VKEAVDNSLDACEEAGITPEIWVTMASTGNNRYQVTVQDNGPGIVKKQIPLIF 108


>gi|220907937|ref|YP_002483248.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864548|gb|ACL44887.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 30  LIENSLDAESS--RVETVI-----AGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L+ N++    +  +++  +      GGG     Q+ DNG G+ ++ +P    R  
Sbjct: 331 LVSNAIQYTPTGGQIQVRLNQILRQGGGTQLQIQVEDNGCGIPAQALPHLFDRFY 385


>gi|197120425|ref|YP_002132376.1| DNA gyrase subunit beta [Anaeromyxobacter sp. K]
 gi|196170274|gb|ACG71247.1| DNA gyrase, B subunit [Anaeromyxobacter sp. K]
          Length = 795

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          + E+++NS+D   A  ++ +   I     +   + DNG G+        +  H T K  D
Sbjct: 28 VYEVVDNSVDEAMAGRANEINVAIHAD--NSITVLDNGSGIP-------IGPHPTVKGMD 78

Query: 83 DFSNIHT 89
              + T
Sbjct: 79 TLDVVLT 85


>gi|169260665|gb|ACA52058.1| DNA gyrase B subunit [Shewanella sp. JG353]
          Length = 762

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   + +   I   G     + D+G G+ 
Sbjct: 7  EVVDNSIDEALAGHCTDITITIHVDG--SVSVKDDGRGIP 44


>gi|220915127|ref|YP_002490431.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219952981|gb|ACL63365.1| DNA gyrase, B subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 795

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          + E+++NS+D   A  ++ +   I     +   + DNG G+        +  H T K  D
Sbjct: 28 VYEVVDNSVDEAMAGRANEINVAIHAD--NSITVLDNGSGIP-------IGPHPTVKGMD 78

Query: 83 DFSNIHT 89
              + T
Sbjct: 79 TLDVVLT 85


>gi|220925822|ref|YP_002501124.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219950429|gb|ACL60821.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 526

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 25  IAIKELIENSLD--AESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRH---CT 77
             ++ LI+N+L   A ++RV   +     G     + D+G G    +     +R     T
Sbjct: 417 QVVEGLIDNALRHAAGATRVWVALRARRDGAE-VTVADDGPGFPP-DAETLFERFRRGGT 474

Query: 78  S 78
           S
Sbjct: 475 S 475


>gi|66046733|ref|YP_236574.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257440|gb|AAY38536.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 745

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +     +       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKMGTIGVAAMSNGTEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|319949427|ref|ZP_08023488.1| DNA gyrase subunit B [Dietzia cinnamea P4]
 gi|319436889|gb|EFV91948.1| DNA gyrase subunit B [Dietzia cinnamea P4]
          Length = 705

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  ++ V+  +   GG    ++ D+G G+  E
Sbjct: 52 EVVDNSVDEAMAGHATGVKVTLLEDGG---VEVIDDGRGIPVE 91


>gi|319776033|ref|YP_004138521.1| sensor protein QseC [Haemophilus influenzae F3047]
 gi|329123191|ref|ZP_08251760.1| sensor histidine kinase QseC [Haemophilus aegyptius ATCC 11116]
 gi|317450624|emb|CBY86844.1| sensor protein QseC [Haemophilus influenzae F3047]
 gi|327471536|gb|EGF16980.1| sensor histidine kinase QseC [Haemophilus aegyptius ATCC 11116]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 358 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 403


>gi|313219954|emb|CBY43655.1| unnamed protein product [Oikopleura dioica]
          Length = 877

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 23/79 (29%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAG-------GGKSFFQITDNGFGMTSEEIPMAVQ 73
           E    AI E+++N+ D+ S +++  +          GK +    D G GM          
Sbjct: 93  ESVFGAIAEIVDNAYDSGSPKLDIELKSVDEHENLQGKGYISFRDVGCGM---------- 142

Query: 74  RHCTSKISDDFSNIHTFGF 92
              TSK   +  N+  +GF
Sbjct: 143 ---TSK---EMFNVIAYGF 155


>gi|289768632|ref|ZP_06528010.1| two-component sensor [Streptomyces lividans TK24]
 gi|289698831|gb|EFD66260.1| two-component sensor [Streptomyces lividans TK24]
          Length = 566

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 5   KLSEKIINQIAAGEIIER-PSIAIKELIENSLDAESS----RVETVIAGGGK-SFFQITD 58
           +L +++++         R     +  L++N+LDA +     RVE  +   G+ +   + D
Sbjct: 426 RLPDRLVD--------PRGLVTIVGNLVDNALDAAAGTAHARVEVELRAEGRAATLTVRD 477

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+ ++   +      ++K
Sbjct: 478 TGPGIAADHRELVFAAGWSTK 498


>gi|284046421|ref|YP_003396761.1| PAS/PAC sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283950642|gb|ADB53386.1| PAS/PAC sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 326

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 16  AGEIIERPSIAIKELIENSL-DAESSRVETVIAG--GGKSF-FQITDNGFGMTSEE 67
           A E+       ++E + N+   A ++R+   I    G  +   ++ D+G G  +EE
Sbjct: 228 ATEVETTAYRVVQECLSNAARHAGATRIAVEITQPHGAATLRVRVRDDGHGFAAEE 283


>gi|256784745|ref|ZP_05523176.1| two-component sensor [Streptomyces lividans TK24]
          Length = 558

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 5   KLSEKIINQIAAGEIIER-PSIAIKELIENSLDAESS----RVETVIAGGGK-SFFQITD 58
           +L +++++         R     +  L++N+LDA +     RVE  +   G+ +   + D
Sbjct: 418 RLPDRLVD--------PRGLVTIVGNLVDNALDAAAGTAHARVEVELRAEGRAATLTVRD 469

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+ ++   +      ++K
Sbjct: 470 TGPGIAADHRELVFAAGWSTK 490


>gi|124516213|gb|EAY57721.1| putative periplasmic sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 546

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 31  IENSLDA-ESS-RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +EN+LDA  S   +    +   G     + D+G G+  E      +   T+K
Sbjct: 441 LENALDATGSGGSIRIRCLEEEGFLTLHVQDSGPGIPPESRDRIFEPFFTTK 492


>gi|21224173|ref|NP_629952.1| two-component sensor [Streptomyces coelicolor A3(2)]
 gi|3036894|emb|CAA18527.1| putative two-component sensor [Streptomyces coelicolor A3(2)]
          Length = 566

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 14/81 (17%)

Query: 5   KLSEKIINQIAAGEIIER-PSIAIKELIENSLDAESS----RVETVIAGGGK-SFFQITD 58
           +L +++++         R     +  L++N+LDA +     RVE  +   G+ +   + D
Sbjct: 426 RLPDRLVD--------PRGLVTIVGNLVDNALDAAAGTAHARVEVELRAEGRAATLTVRD 477

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+ ++   +      ++K
Sbjct: 478 TGPGIAADHRELVFAAGWSTK 498


>gi|320104022|ref|YP_004179613.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319751304|gb|ADV63064.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 482

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 15/86 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA--ESSRV----ETVIAGGGKSF------ 53
           L + +  ++ A  + ++    +  L  N+LDA  +  R+      V  G           
Sbjct: 328 LPDDLP-RVRA--VKDKLVQVVLNLTMNALDATGKGGRILWSARVVAEGDATGSQASGLV 384

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ D+G G+   EIP+  + H T+K
Sbjct: 385 LRVDDDGPGVPQAEIPLLFEAHHTTK 410


>gi|307272441|ref|ZP_07553695.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0855]
 gi|306510903|gb|EFM79919.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0855]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 404 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 450


>gi|255655021|ref|ZP_05400430.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 295

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           LI+N +  + + ++E +++   K+   ++ DNG G+  E++    +R
Sbjct: 198 LIQNVISHSHADKIEIILSKQEKNMQIRLADNGIGIEKEDLKHIFER 244


>gi|225375836|ref|ZP_03753057.1| hypothetical protein ROSEINA2194_01468 [Roseburia inulinivorans DSM
           16841]
 gi|225212271|gb|EEG94625.1| hypothetical protein ROSEINA2194_01468 [Roseburia inulinivorans DSM
           16841]
          Length = 500

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+ + ++P    R  
Sbjct: 404 INIRIKDVG-DFIQVEIEDNGRGIAAADLPYIFDRFY 439


>gi|222107128|ref|YP_002547919.1| two component sensor kinase for C4-dicarboxylate transport
           [Agrobacterium vitis S4]
 gi|221738307|gb|ACM39203.1| two component sensor kinase for C4-dicarboxylate transport
           [Agrobacterium vitis S4]
          Length = 600

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 22  RPSIAIKELIENSLDA------ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
           R    +  L++N+L+A         RVE  +    +     I DNG G+  +   +    
Sbjct: 495 RLEQVLINLLQNALEALEQRSDG--RVEVSVQETEQHVVVTIEDNGPGIPEDIRRLLFTP 552

Query: 75  HCTSK---------ISDDFSNIHTFGFR 93
             TSK         IS D   I  +G R
Sbjct: 553 FTTSKEKGLGLGLVISRDI--ISDYGGR 578


>gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille]
 gi|151280125|gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille]
          Length = 832

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
              + E+++NS+D   A   + +   I     +   ITDNG G+ 
Sbjct: 48 LHHCVFEVLDNSIDESLAGHCTEIHVTIHSD--NSISITDNGRGIP 91


>gi|149280406|ref|ZP_01886526.1| putative transmembrane protein [Pedobacter sp. BAL39]
 gi|149228820|gb|EDM34219.1| putative transmembrane protein [Pedobacter sp. BAL39]
          Length = 745

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 8/49 (16%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 19  IIERPSIAIKELIENSLD-AESSRVETVIAGGG-KSFFQITDNGFGMTS 65
           ++ R    ++EL+ N++  A+++++   ++    +    + D+G G   
Sbjct: 650 VVYR---IVQELVNNAVKHADATQIMVQLSEYNNRILITVEDDGKGFDP 695


>gi|148264371|ref|YP_001231077.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146397871|gb|ABQ26504.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 681

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRHCTSK 79
           L+ N+++A     ++   +  G  +F ++ D+G G+  + +         T+K
Sbjct: 588 LLLNAVEATDGRGQISVEVGAGNLAFIKVLDDGCGIAPDFLHEYLFTPFKTTK 640


>gi|134093298|ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans]
 gi|133737201|emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans]
          Length = 835

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
              + E+++NS+D   A   + +   I     +   ITDNG G+ 
Sbjct: 51 LHHCVFEVLDNSIDESLAGHCTEIHVTIHSD--NSISITDNGRGIP 94


>gi|161523611|ref|YP_001578623.1| histidine kinase [Burkholderia multivorans ATCC 17616]
 gi|189351620|ref|YP_001947248.1| C4-dicarboxylate transport sensor protein [Burkholderia multivorans
           ATCC 17616]
 gi|160341040|gb|ABX14126.1| histidine kinase [Burkholderia multivorans ATCC 17616]
 gi|189335642|dbj|BAG44712.1| C4-dicarboxylate transport sensor protein [Burkholderia multivorans
           ATCC 17616]
          Length = 668

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++     +E  +A    +   ++ DNG G+  E +P   +   
Sbjct: 548 RLEQVLINLLGNALDAVAAVAAPAIEVTVAVSSATVAIEVRDNGPGIPPELLPRLFEPFF 607

Query: 77  TSK 79
           T+K
Sbjct: 608 TTK 610


>gi|92117427|ref|YP_577156.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91800321|gb|ABE62696.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
          Length = 484

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 12  NQIAAGEII----ERPSIAIKELIENSLDA-ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
           N IA    +       +  +  LIEN+  A  + R    I  G +    + D+G G+   
Sbjct: 337 NLIADHLCVPLDRTDLAEVLGNLIENA--ARHAGR-SVRITDGSQLSLVVEDDGEGIEPS 393

Query: 67  EIPMAVQRHC 76
            +   + R  
Sbjct: 394 HLSRVLARGA 403


>gi|13474721|ref|NP_106290.1| two-component sensor kinase [Mesorhizobium loti MAFF303099]
 gi|14025476|dbj|BAB52076.1| two-component sensor kinase [Mesorhizobium loti MAFF303099]
          Length = 477

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 20  IER-PSIAIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IER  +     L+ N+++    S  +   I   G    ++ D G G+ +EE     +   
Sbjct: 377 IERALAN----LVRNAIEHGGGSGTITIAID--GTGGIEVRDEGPGIPAEERENVFEPFY 430


>gi|254238319|ref|ZP_04931642.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719]
 gi|126170250|gb|EAZ55761.1| topoisomerase IV subunit B [Pseudomonas aeruginosa C3719]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM      EE    +
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   +
Sbjct: 87  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFK 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                    +           +        +  S +   + +  V++  A+  P +S  F
Sbjct: 146 DSDLEVIGTVGKRNTGTSVHFW----PDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVF 201

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                                 + ++++
Sbjct: 202 EDKNTGERVEWHFEDGLRSYLTDAVAEL 229


>gi|107104066|ref|ZP_01367984.1| hypothetical protein PaerPA_01005139 [Pseudomonas aeruginosa PACS2]
 gi|116053115|ref|YP_793435.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391808|ref|ZP_06881283.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAb1]
 gi|313109973|ref|ZP_07795899.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016]
 gi|115588336|gb|ABJ14351.1| topoisomerase IV subunit B [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310882401|gb|EFQ40995.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 39016]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM      EE    +
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   +
Sbjct: 87  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFK 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                    +           +        +  S +   + +  V++  A+  P +S  F
Sbjct: 146 DSDLEVIGTVGKRNTGTSVHFW----PDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVF 201

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                                 + ++++
Sbjct: 202 EDKNTGERVEWHFEDGLRSYLTDAVAEL 229


>gi|15600160|ref|NP_253654.1| DNA topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1]
 gi|254244145|ref|ZP_04937467.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192]
 gi|81783542|sp|Q9HUJ8|PARE_PSEAE RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|9951249|gb|AAG08352.1|AE004909_8 topoisomerase IV subunit B [Pseudomonas aeruginosa PAO1]
 gi|126197523|gb|EAZ61586.1| topoisomerase IV subunit B [Pseudomonas aeruginosa 2192]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM      EE    +
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGV 86

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   +
Sbjct: 87  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGFK 145

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                    +           +        +  S +   + +  V++  A+  P +S  F
Sbjct: 146 DSDLEVIGTVGKRNTGTSVHFW----PDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVVF 201

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                                 + ++++
Sbjct: 202 EDKNTGERVEWHFEDGLRSYLTDAVAEL 229


>gi|319780626|ref|YP_004140102.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166514|gb|ADV10052.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 456

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQR 74
           L+EN+L    +  + ++  +A  G+     + DNG G+ +EE     QR
Sbjct: 358 LVENALRHCPSG-TTIKLSVARQGERVVAGVADNGPGIPAEEREKVFQR 405


>gi|221199908|ref|ZP_03572951.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
 gi|221207423|ref|ZP_03580432.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221172626|gb|EEE05064.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221180147|gb|EEE12551.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
          Length = 668

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++     +E  +A    +   ++ DNG G+  E +P   +   
Sbjct: 548 RLEQVLINLLGNALDAVAAVAAPAIEVTVAVSSATVAIEVRDNGPGIPPELLPRLFEPFF 607

Query: 77  TSK 79
           T+K
Sbjct: 608 TTK 610


>gi|86357346|ref|YP_469238.1| putative two-component sensor histidine kinase protein [Rhizobium
          etli CFN 42]
 gi|86281448|gb|ABC90511.1| putative two-component sensor histidine kinase protein [Rhizobium
          etli CFN 42]
          Length = 124

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 22 RPSIAIKELIENSLD-A-ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            S  +  L+ N++  A  +S +        G     I+D+G G+ +E++P   QR+
Sbjct: 17 SLSQVVTNLLSNAVKYAPGTSEIRVAAWEETGNVKISISDDGVGIDAEDVPRLFQRY 73


>gi|27754645|gb|AAO22768.1| unknown protein [Arabidopsis thaliana]
          Length = 626

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ V+      +     +     D+G GM    +   +    +S
Sbjct: 97  AIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALVF-QDDGGGMDPAGLRKCMSLGYSS 155

Query: 79  K 79
           K
Sbjct: 156 K 156


>gi|30690622|ref|NP_195351.2| ATP-binding region, ATPase-like domain-containing protein
           [Arabidopsis thaliana]
 gi|58331775|gb|AAW70385.1| At4g36280 [Arabidopsis thaliana]
 gi|332661243|gb|AEE86643.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis
           thaliana]
          Length = 626

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ V+      +     +     D+G GM    +   +    +S
Sbjct: 97  AIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALVF-QDDGGGMDPAGLRKCMSLGYSS 155

Query: 79  K 79
           K
Sbjct: 156 K 156


>gi|86131272|ref|ZP_01049871.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
 gi|85818683|gb|EAQ39843.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
          Length = 396

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++DA     +  +         +  QITD G G+   +     +   T+K
Sbjct: 301 LIKNAIDAMKGKGALTITIT-RDKRFAIVQITDTGKGIAKSKFNKIFEPGFTTK 353


>gi|110638017|ref|YP_678224.1| DNA topoisomerase IV subunit B [Cytophaga hutchinsonii ATCC
          33406]
 gi|110280698|gb|ABG58884.1| DNA topoisomerase IV, subunit B [Cytophaga hutchinsonii ATCC
          33406]
          Length = 628

 Score = 42.3 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 27 IKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          +KE+I+NS+D        +++ VI        ++ D G G+    +   +   C SKI+ 
Sbjct: 47 VKEIIDNSIDEHMMGNGKQIDIVITD---KKVEVRDYGRGIP---LGKVID--CVSKINT 98


>gi|328675722|gb|AEB28397.1| DNA gyrase subunit B [Francisella cf. novicida 3523]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|315639365|ref|ZP_07894527.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter
          upsaliensis JV21]
 gi|315480691|gb|EFU71333.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Campylobacter
          upsaliensis JV21]
          Length = 770

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     ++  +   G     ++DNG G+ 
Sbjct: 41 EVVDNSIDEAMAGHCDTIDIELTTEG--SCIVSDNGRGIP 78


>gi|315644305|ref|ZP_07897475.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
 gi|315280680|gb|EFU43969.1| DNA gyrase, B subunit [Paenibacillus vortex V453]
          Length = 634

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +E ++     +   + DNG G+ 
Sbjct: 42 EVVDNSIDEAMAGICDHIEIIVHED--NSVTVIDNGRGIP 79


>gi|271963345|ref|YP_003337541.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270506520|gb|ACZ84798.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 957

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 17  GEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIP 69
           G  +      I EL+EN++     D   +++     G         +TD G GM+ EE+ 
Sbjct: 531 GSAVNDIVHLIAELVENAIFFSPQD---TKITVSSNGNETGAIILAVTDAGIGMSEEELA 587

Query: 70  MAVQRHC 76
            A +R  
Sbjct: 588 EANRRLA 594


>gi|256005571|ref|ZP_05430531.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281418897|ref|ZP_06249915.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|255990479|gb|EEU00601.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281407354|gb|EFB37614.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|316941508|gb|ADU75542.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 463

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           +VE      G     ++ DNG G+  E++P   +R
Sbjct: 376 KVEISAKSKGDVLEIRVKDNGQGIPEEDLPFVFER 410


>gi|241668890|ref|ZP_04756468.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
          subsp. philomiragia ATCC 25015]
 gi|254877422|ref|ZP_05250132.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254843443|gb|EET21857.1| DNA gyrase subunit B gyrB [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGHCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|291300334|ref|YP_003511612.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
 gi|290569554|gb|ADD42519.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
          Length = 794

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 26  AIK---ELIENS---------LDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
            +K   EL++N+         +DA +           +   QI+D+G GM   ++     
Sbjct: 526 VVKLLAELMDNATRYSQPEVVVDARA--------LADRLIIQISDSGIGMEPAKMDSINA 577

Query: 74  RHCTSKISDDFSNIHTFG 91
           R  T K   D   + + G
Sbjct: 578 RLAT-KPPLDLEAVRSMG 594


>gi|237753472|ref|ZP_04583952.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430]
 gi|229375739|gb|EEO25830.1| DNA gyrase subunit B [Helicobacter winghamensis ATCC BAA-430]
          Length = 770

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A   ++++ ++   GG     ITDNG G+  +
Sbjct: 42 EVVDNCIDEAMAGYCTKIDVILTKNGGAK---ITDNGRGIPVD 81


>gi|227329372|ref|ZP_03833396.1| two-component system sensor histidine kinase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 525

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 19  IIERPSIAIKELIENSLD--AESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIP 69
           ++      ++EL+ N ++  A ++++   ++          + DNG G+T ++ P
Sbjct: 419 VVFTLYRLVQELLNN-INKHASATQITVRLSQ-QDDLITLDVIDNGVGITQKDRP 471


>gi|225868546|ref|YP_002744494.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus]
 gi|225701822|emb|CAW99259.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus]
          Length = 325

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            ++  I  G      I+DNG G+  E++P   +   T
Sbjct: 234 HIKVSIKEG---SIFISDNGIGILEEDLPRLFEEGFT 267


>gi|221211118|ref|ZP_03584097.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD1]
 gi|221168479|gb|EEE00947.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD1]
          Length = 668

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA ++     +E  +A    +   ++ DNG G+  E +P   +   
Sbjct: 548 RLEQVLINLLGNALDAVAAVAAPAIEVTVAVSSATVAIEVRDNGPGIPPELLPRLFEPFF 607

Query: 77  TSK 79
           T+K
Sbjct: 608 TTK 610


>gi|208778992|ref|ZP_03246338.1| DNA gyrase, B subunit [Francisella novicida FTG]
 gi|208744792|gb|EDZ91090.1| DNA gyrase, B subunit [Francisella novicida FTG]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|194288792|ref|YP_002004699.1| c4-dicarboxylate transport sensor kinase [Cupriavidus taiwanensis
           LMG 19424]
 gi|193222627|emb|CAQ68630.1| C4-DICARBOXYLATE TRANSPORT SENSOR KINASE TRANSCRIPTION REGULATOR
           PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 651

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA + + +  IA      GG     + DNG G++ E      +   
Sbjct: 534 RLEQVLVNLLGNALDAVAGKPDPRIALHAHVAGGMVHLTVRDNGAGLSEEAFARLFEPFF 593

Query: 77  TSK 79
           T+K
Sbjct: 594 TTK 596


>gi|187932024|ref|YP_001892009.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|187712933|gb|ACD31230.1| DNA gyrase, B subunit [Francisella tularensis subsp. mediasiatica
          FSC147]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|167626458|ref|YP_001676958.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
          ATCC 25017]
 gi|167596459|gb|ABZ86457.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
          subsp. philomiragia ATCC 25017]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGHCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|169656699|ref|YP_001429063.2| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|164551767|gb|ABU62107.2| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica
          FTNF002-00]
          Length = 805

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 46 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 85


>gi|254369714|ref|ZP_04985724.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
          FSC022]
 gi|157122673|gb|EDO66802.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
          FSC022]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|254374023|ref|ZP_04989505.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548]
 gi|151571743|gb|EDN37397.1| hypothetical protein FTDG_00183 [Francisella novicida GA99-3548]
 gi|328676671|gb|AEB27541.1| DNA gyrase subunit B [Francisella cf. novicida Fx1]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|134302418|ref|YP_001122388.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|224456719|ref|ZP_03665192.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254370164|ref|ZP_04986170.1| DNA topoisomerase [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874466|ref|ZP_05247176.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987]
 gi|134050195|gb|ABO47266.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|151568408|gb|EDN34062.1| DNA topoisomerase [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254840465|gb|EET18901.1| DNA gyrase B [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158808|gb|ADA78199.1| DNA gyrase, B subunit [Francisella tularensis subsp. tularensis
          NE061598]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|118497199|ref|YP_898249.1| DNA gyrase subunit B [Francisella tularensis subsp. novicida
          U112]
 gi|194323498|ref|ZP_03057275.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida
          FTE]
 gi|254372564|ref|ZP_04988053.1| hypothetical protein FTCG_00127 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|118423105|gb|ABK89495.1| DNA gyrase subunit B [Francisella novicida U112]
 gi|151570291|gb|EDN35945.1| hypothetical protein FTCG_00127 [Francisella novicida GA99-3549]
 gi|194322353|gb|EDX19834.1| DNA gyrase, B subunit [Francisella tularensis subsp. novicida
          FTE]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|89256831|ref|YP_514193.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
          LVS]
 gi|115315217|ref|YP_763940.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis
          subsp. holarctica OSU18]
 gi|167009278|ref|ZP_02274209.1| DNA gyrase, B subunit [Francisella tularensis subsp. holarctica
          FSC200]
 gi|290954382|ref|ZP_06559003.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis
          subsp. holarctica URFT1]
 gi|295312203|ref|ZP_06803005.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis
          subsp. holarctica URFT1]
 gi|89144662|emb|CAJ79986.1| DNA gyrase subunit B [Francisella tularensis subsp. holarctica
          LVS]
 gi|115130116|gb|ABI83303.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis
          subsp. holarctica OSU18]
          Length = 803

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 44 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 83


>gi|56707649|ref|YP_169545.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
          SCHU S4]
 gi|110670120|ref|YP_666677.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
          FSC198]
 gi|56604141|emb|CAG45143.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
          SCHU S4]
 gi|110320453|emb|CAL08526.1| DNA gyrase subunit B [Francisella tularensis subsp. tularensis
          FSC198]
          Length = 805

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++ +I   G     ++DNG G+ ++
Sbjct: 46 EVVDNAIDEALAGYCDDIKVIINKDG--SVSVSDNGRGIPTD 85


>gi|294138805|ref|YP_003554783.1| DNA gyrase subunit B [Shewanella violacea DSS12]
 gi|23307486|dbj|BAC16536.1| DNA topoisomerase chain B [Shewanella violacea]
 gi|293325274|dbj|BAJ00005.1| DNA gyrase, B subunit [Shewanella violacea DSS12]
          Length = 806

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 74/247 (29%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S V   I     +   + D+G G+      EE   A +      H
Sbjct: 43  EVVDNSIDEALAGHCSEVIITIHAD--NSVSVKDDGRGIPVDIHPEEGISAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        ++      +      
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLQLTIRRNG-----KLYEQFYTMGVPDAP 154

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               G            P+   F  + +   +++   +R ++     V       + NR 
Sbjct: 155 IKEIGDATSTGTELRFWPSHETFTTNIKFHFDILVKRVRELSFLNSGVGIRLIDERDNRD 214

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           +  F    G     +  +       N    +                +N G     + F 
Sbjct: 215 E--FFQYQGGISAFVDYLNVNKTAVNKDVFHFIQERDDGITVEVAMQWNDGFQENIFCFT 272

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 273 NNIPQRD 279


>gi|86151926|ref|ZP_01070139.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|121612611|ref|YP_001001140.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167006033|ref|ZP_02271791.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|315124922|ref|YP_004066926.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85841034|gb|EAQ58283.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|87249725|gb|EAQ72684.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|315018644|gb|ADT66737.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 403

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 302 LILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 357


>gi|57506226|ref|ZP_00372145.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195]
 gi|57015494|gb|EAL52289.1| DNA gyrase, B subunit [Campylobacter upsaliensis RM3195]
          Length = 770

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     ++  +   G     ++DNG G+ 
Sbjct: 41 EVVDNSIDEAMAGHCDTIDIELTTEG--SCIVSDNGRGIP 78


>gi|125974350|ref|YP_001038260.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714575|gb|ABN53067.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 463

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           +VE      G     ++ DNG G+  E++P   +R
Sbjct: 376 KVEISAKSKGDVLEIRVKDNGQGIPEEDLPFVFER 410


>gi|325285799|ref|YP_004261589.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324321253|gb|ADY28718.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 351

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           ER    +  L+ NS+       ++ V     I    K   ++TDNG G++ E +    +R
Sbjct: 237 ERMQQVVSNLLVNSIKYGHTNGTTEVSVENLIKN--KVIVRVTDNGEGISKEHLSRLFER 294

Query: 75  HC 76
             
Sbjct: 295 FY 296


>gi|315940105|gb|ADU56231.1| DNA gyrase subunit B [Nocardia gamkensis]
          Length = 491

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +++VE  + A GG    ++ D+G G+ 
Sbjct: 20 EVVDNSVDEAMAGYATKVEVTLLADGG---VEVVDDGRGIP 57


>gi|291551174|emb|CBL27436.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain
           [Ruminococcus torques L2-14]
          Length = 352

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 22/136 (16%)

Query: 19  IIERPSI---AIKELIENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPM 70
           +I  P      I  ++ NS+   D    ++   +   G  F Q+   DNG G+ ++++P 
Sbjct: 230 VIVDPEQLRRVINNIVSNSIKYTDKPKVKITMDVKDVG-DFIQVELGDNGKGIAAKDLPN 288

Query: 71  AVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISS 130
              R        D S   + G  G     IG    L+++ +  + + G   A S E + +
Sbjct: 289 IFDRFY----RTDASRNSSKGGSG-----IG----LSIVKKIVEEHGGKIWATSEEGVGT 335

Query: 131 VRPVAMNPGTIVEVRD 146
                +     V V D
Sbjct: 336 TMYFVIRKYQEVPVED 351


>gi|291519486|emb|CBK74707.1| DNA topoisomerase IV subunit B [Butyrivibrio fibrisolvens 16/4]
          Length = 641

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   +   G     + DNG G+ 
Sbjct: 43 EIVDNSVDEHLAGECDTIYVTLEKDG--SCTVEDNGRGIP 80


>gi|291299029|ref|YP_003510307.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
 gi|290568249|gb|ADD41214.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
          Length = 378

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 8/45 (17%)

Query: 19  IIERPSIAIKELIENSLDAESSRVETVIAGG-GKSFFQITDNGFG 62
           + E  +  +K        A +SRV   IA   G    ++ DNG G
Sbjct: 293 VQESLTNVVKH-------AGASRVAVDIAYAPGLVTIEVVDNGHG 330


>gi|303273552|ref|XP_003056137.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462221|gb|EEH59513.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +S +  V+   G  F  + D+G G+ ++
Sbjct: 17 EVLDNSVDEIQAGHASVITVVLEPDG--FVSVEDDGRGIPTD 56


>gi|239627745|ref|ZP_04670776.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239517891|gb|EEQ57757.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 506

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+ ++++P    R  
Sbjct: 407 INIRIKDVG-DFIQVEIEDNGKGIAAKDLPNIFDRFY 442


>gi|221114475|ref|XP_002156367.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 724

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 22  RPSIAIKELIENSLDAE-----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            P  AI E I+N + A      +  +   I    +    I DNG GM +EEI   +    
Sbjct: 219 SPYQAICEFIDNGIQATNDNPIARDITIYIFS-TQKIICILDNGKGMCAEEIKAFLSYFL 277

Query: 77  TSKISD-DFSNIHTFGF 92
           T K    D+    ++GF
Sbjct: 278 TQKDRGIDYEEPLSYGF 294


>gi|148925659|ref|ZP_01809347.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845669|gb|EDK22760.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 402

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 302 LILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 357


>gi|115379037|ref|ZP_01466165.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|310820192|ref|YP_003952550.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363956|gb|EAU63063.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|309393264|gb|ADO70723.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 566

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 39  SSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++ +     ++G G+   +++D G G+  E +P   +   T+K
Sbjct: 466 ANEIRILTRLSGPGRVQVEVSDTGCGIAQENLPRIFEPFFTTK 508


>gi|34419280|ref|NP_899293.1| topoisomerase II large subunit [Vibrio phage KVP40]
 gi|34332961|gb|AAQ64116.1| topoisomerase II large subunit [Vibrio phage KVP40]
          Length = 597

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMTS 65
           QI   E +      I E+I+NSLD         ++ +E  + G       I DNG G+  
Sbjct: 42  QI---EYVPGLVKIINEVIDNSLDEAIRTKFKFANVIEVKVEGN---RITIADNGRGIPQ 95

Query: 66  EEIPMAVQRH 75
           +     +  H
Sbjct: 96  D---KVIDPH 102


>gi|315453774|ref|YP_004074044.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179]
 gi|315132826|emb|CBY83454.1| DNA gyrase subunit B [Helicobacter felis ATCC 49179]
          Length = 766

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     ++  ++  G     + DNG G+  +
Sbjct: 38 VYEVVDNAVDESMAGFCDHIKVTLSQYG--SCIVEDNGRGIPVD 79


>gi|299068399|emb|CBJ39623.1| sensory histidine kinase [Ralstonia solanacearum CMR15]
          Length = 486

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 30  LIENSLD---AESSRVETVIAGGG----KSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L+EN+LD   A S  VE  +   G    ++   ++ D G G+    +P   +R  
Sbjct: 383 LVENALDFAPAGS-MVEVTVTHAGGGDARTLAIEVADRGPGIPEYAMPRLFERFY 436


>gi|260427562|ref|ZP_05781541.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp.
           SE45]
 gi|260422054|gb|EEX15305.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp.
           SE45]
          Length = 599

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 15  AAGEIIERPSIAIKELIENSLDA---ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPM 70
            AG +  R    +  L+ N+++A       V   I   GG+    + DNG G+  E +P 
Sbjct: 478 RAGHV--RLEQVLVNLLHNAIEAVEPGRGEVTLSIRETGGELALAVRDNGPGIPEEVLPR 535

Query: 71  AVQRHCTSKI 80
             +   ++KI
Sbjct: 536 MTEPFFSTKI 545


>gi|260574430|ref|ZP_05842434.1| DNA gyrase, B subunit [Rhodobacter sp. SW2]
 gi|259023326|gb|EEW26618.1| DNA gyrase, B subunit [Rhodobacter sp. SW2]
          Length = 805

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N +D   A  ++ V   I   G     + DNG G+  +
Sbjct: 46 VYEVVDNGIDEALAGHATAVSVKIHADG--SVSVRDNGRGIPVD 87


>gi|297570445|ref|YP_003691789.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926360|gb|ADH87170.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 589

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH---TFG 91
              +TD+G G+   ++    +   ++K  D+ + +    T+G
Sbjct: 503 LITVTDDGCGIAEADLKKVFEPFFSTKSKDEGTGLGLFVTYG 544


>gi|242239903|ref|YP_002988084.1| histidine kinase [Dickeya dadantii Ech703]
 gi|242131960|gb|ACS86262.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 20  IERPSIAIKELIEN-SLDAESSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           +      ++EL+ N S  A++ R+   I+   G    ++ DNG G+  +
Sbjct: 426 VFTLYRLVQELLNNISKHADARRIRVRISHQQGMLTLEVRDNGIGIPDD 474


>gi|197123067|ref|YP_002135018.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196172916|gb|ACG73889.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 590

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 22  RPSIAIKELIENSLDAESSR-VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH--CT 77
           R   A+  L+ N++   + R VE  +   G      + D+G G+   +      R    T
Sbjct: 463 RLEQALGHLLSNAVRHGAGRPVEIRVEAAGALGRMVVVDHGSGVDPADAERIFGRFERAT 522

Query: 78  S 78
           S
Sbjct: 523 S 523


>gi|170737379|ref|YP_001778639.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169819567|gb|ACA94149.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 440

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAAPDGGAVIAVLDRGPGIPDDQLDAVFEPF 387


>gi|163858336|ref|YP_001632634.1| putative two-component system sensor protein [Bordetella petrii DSM
           12804]
 gi|163262064|emb|CAP44366.1| putative two-component system sensor protein [Bordetella petrii]
          Length = 433

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 24/113 (21%)

Query: 25  IAIKELIENSLD--AESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
             ++ L+ N+++  A ++         G +     ++ DNG G+  EE+P   QR+ + +
Sbjct: 326 TVLRNLVRNAIEHAAPAT------LTAGLTHDGALELRDNGKGIAPEELPFVFQRYYSGR 379

Query: 80  ISDDFSNIHT---FGF-RGEALPSIGA-VS-----HLTLMSRPPQNNTGAQIA 122
           + D  +   T    GF RG  L  I   V       L + S       G    
Sbjct: 380 LGD--TAGATPDDSGFPRGLGLA-IAKRVCDMQGWDLRVESERAGAGQGTCFV 429


>gi|126698684|ref|YP_001087581.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|115250121|emb|CAJ67942.1| Two-component sensor histidine kinase,Tn1549-like, CTn4-Orf27
           [Clostridium difficile]
          Length = 305

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQR 74
           LI+N +  + + ++E +++   K+   ++ DNG G+  E++    +R
Sbjct: 208 LIQNVISHSHADKIEIILSKQEKNMQIRLADNGIGIEKEDLKHIFER 254


>gi|167646386|ref|YP_001684049.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167348816|gb|ABZ71551.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 474

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 23  PSIAIKELIENSLDAESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            + A++ LIEN++            +E  +  G  +   + D+G G+  +++     R 
Sbjct: 353 LARALRNLIENAI----RHTGPQGPIEVTVGPG--ARLSVRDHGSGIPQDDLDKIFDRF 405


>gi|107025471|ref|YP_622982.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|116693347|ref|YP_838880.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
 gi|105894845|gb|ABF78009.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|116651347|gb|ABK11987.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
          Length = 440

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAAPDGGAVIAVLDRGPGIPDDQLDAVFEPF 387


>gi|91203170|emb|CAJ72809.1| similar to two component histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 815

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 18/70 (25%)

Query: 17  GEI----IERPSIAIKELIENSLDAESSRVETVIAGGGKSF---FQITDNGFGMTSEEIP 69
           G++    I   + A+KE+ E             IA   K +     I+DNG G+  +++P
Sbjct: 713 GQVFMNIILNAAQALKEMGE-----------IRIATYRKDYFIFIVISDNGPGIPEQDLP 761

Query: 70  MAVQRHCTSK 79
              +   T+K
Sbjct: 762 KIFEPFFTTK 771


>gi|154247316|ref|YP_001418274.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154161401|gb|ABS68617.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 648

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 30  LIENSLDAES------SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA +        +   + G       ++ D G G+T+E +P       T+K
Sbjct: 540 LIMNAMDALADTPEEQRNIVLSLEGSATDATIRVRDRGHGITAEHLPKLFDSFFTTK 596


>gi|254249879|ref|ZP_04943199.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124876380|gb|EAY66370.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
          Length = 440

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 20  IERPSI---AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + RP      +  L++N+L  A ++ ++   A  G +   + D G G+  +++    +  
Sbjct: 328 VTRPKALRRIVGNLVDNALKFAGAAEIDVQAAPDGGAVIAVLDRGPGIPDDQLDAVFEPF 387


>gi|329910562|ref|ZP_08275328.1| sensor histidine kinase TctE, putative [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546149|gb|EGF31201.1| sensor histidine kinase TctE, putative [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 478

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 30  LIENSLD---AESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+ N+LD   A  S +   I+    G  +  ++ D G G+ ++E          S
Sbjct: 375 LVGNALDYTPAGGS-IAVRISAATDGRGALLEVEDTGCGIAADEREKVFAPFYRS 428


>gi|319938206|ref|ZP_08012604.1| hypothetical protein HMPREF9488_03440 [Coprobacillus sp. 29_1]
 gi|319806727|gb|EFW03376.1| hypothetical protein HMPREF9488_03440 [Coprobacillus sp. 29_1]
          Length = 425

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 1   MK-IRKLSEKIIN--QIAAGEIIERPSIAIKELIENSLDAESSRVETVIA-GGGKSFFQI 56
           M  I+ + E +I+   I   ++ +           NS   E+S+++             I
Sbjct: 305 MTHIQSIPECLISYDAIRLQQVFDNLLS-------NSYKYEASQIDISFEFKKNHFVIFI 357

Query: 57  TDNGFGMTSEEIPMAVQRHC 76
           +DNG G+  +E+P+  ++  
Sbjct: 358 SDNGLGIKKDELPLLFEKFY 377


>gi|308069402|ref|YP_003871007.1| topoisomerase IV subunit B [Paenibacillus polymyxa E681]
 gi|305858681|gb|ADM70469.1| Topoisomerase IV subunit B [Paenibacillus polymyxa E681]
          Length = 659

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A+  SR++  +   G     ++DNG G+ 
Sbjct: 57 EIVDNAVDEHLAKFCSRIDITMHKDG--SITVSDNGRGIP 94


>gi|295110276|emb|CBL24229.1| DNA topoisomerase IV subunit B [Ruminococcus obeum A2-162]
          Length = 641

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   S +  V+   G     +TDNG G+  +
Sbjct: 43 EIVDNAVDEHLAGYCSLIHVVLEKDG--SCTVTDNGRGIPVD 82


>gi|145641033|ref|ZP_01796614.1| sensor protein QseC [Haemophilus influenzae R3021]
 gi|145274194|gb|EDK14059.1| sensor protein QseC [Haemophilus influenzae 22.4-21]
          Length = 325

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++     D   + V   I+    S   I DNG G+  E++    QR  
Sbjct: 226 LLDNAIKYCPED---TIVSVKISS---SQIIIEDNGGGVEPEDLKKLGQRFY 271


>gi|160879820|ref|YP_001558788.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160428486|gb|ABX42049.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 477

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 30  LIENSLDAESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC-TSKISDDFSN 86
           L++N++ A S+ +     I         I+DNG G+ ++E+    +      K      +
Sbjct: 374 LVDNAVKAGSAEISLTGEITANSY-RIGISDNGRGIPADELDRITEAFYMVDKSRSRKQH 432

Query: 87  IHTFGFRGEALPS-IGAV--SHLTLMS 110
               G    +L S I  +  S L   S
Sbjct: 433 GAGLGL---SLASKIAQIHGSRLEFES 456


>gi|89160899|gb|ABD62993.1| DNA gyrase subunit B [Lactobacillus brevis]
          Length = 319

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A  +  +   +     +   +TDNG G+  +
Sbjct: 28 EIVDNGIDEALAGFADEIHVTVNQD--NSITVTDNGRGIPVD 67


>gi|189499883|ref|YP_001959353.1| integral membrane sensor hybrid histidine kinase [Chlorobium
           phaeobacteroides BS1]
 gi|189495324|gb|ACE03872.1| integral membrane sensor hybrid histidine kinase [Chlorobium
           phaeobacteroides BS1]
          Length = 704

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 30  LIENSL-------DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+L       DA   R+   +  G +    ++ D G G+ SE +P     + TS
Sbjct: 331 LIMNALHYLKSCPDA---RIYISLEKGVQWNRVKVKDTGPGIPSENLPRLFDAYFTS 384


>gi|332668638|ref|YP_004451645.1| ATP-binding domain-containing protein [Cellulomonas fimi ATCC 484]
 gi|332337675|gb|AEE44258.1| ATP-binding region ATPase domain protein [Cellulomonas fimi ATCC
           484]
          Length = 615

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 20/108 (18%)

Query: 27  IKELIENSLDA-ESSR---------VETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRH 75
           ++EL++N++DA  + R         V      GG    ++TD G G+T++E   +     
Sbjct: 35  VRELLQNAVDAVTARRALDPAAPGTVRLRAVEGGV--LEVTDTGVGLTADEARELLATVG 92

Query: 76  CTSKISDDFS----NIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
            +SK   D           G  G  L S   VS  + L+SR   +   
Sbjct: 93  RSSK--RDLELGVGRAEFLGQFGIGLLSAFMVSDRIELVSRSAADPDA 138


>gi|312962800|ref|ZP_07777287.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
 gi|311282827|gb|EFQ61421.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
          Length = 600

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  + A        ++D+G G+  E +        
Sbjct: 489 RLEQVLINLLRNALDAMADKPRKRLEIRLHADQQLWVLSVSDSGGGIAEEHLNNVFDPFF 548

Query: 77  TSK 79
           T+K
Sbjct: 549 TTK 551


>gi|310826464|ref|YP_003958821.1| histidine kinase [Eubacterium limosum KIST612]
 gi|308738198|gb|ADO35858.1| histidine kinase [Eubacterium limosum KIST612]
          Length = 182

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 28 KEL-------IENSLDAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          KEL        +NS+ A +S V+  I            I DNG G+ ++++P       T
Sbjct: 2  KELSLHILDITQNSIRAGASLVKLTINENVDDNLLEIIIEDNGKGIPADKLPSITDPFVT 61


>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
 gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
          Length = 876

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 30  LIENSL--DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N+L   AE  ++    I    +    +TDNG G+ S+E+P    R  
Sbjct: 494 LLSNALKYTAEGGKISLKAIKKDERVIISVTDNGCGIASDELPYIFNRFY 543


>gi|229154280|ref|ZP_04282400.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228629104|gb|EEK85811.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
          Length = 551

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAES----SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A +     +VE  I  G      + D G G+  EEI     +  ++K
Sbjct: 451 LIDNALEAVANCEKKQVEVKIQYGDTLIITVQDTGKGIQEEEIGALFTKGYSTK 504


>gi|225574099|ref|ZP_03782710.1| hypothetical protein RUMHYD_02164 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038699|gb|EEG48945.1| hypothetical protein RUMHYD_02164 [Blautia hydrogenotrophica DSM
           10507]
          Length = 471

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 30  LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    D  S+ +        GK F  + D+G G+  E +P   +R  
Sbjct: 371 LLDNAIKFSND-NST-ITIETTEKNGKIFVSVKDHGCGIPKEILPKIWERFY 420


>gi|224826014|ref|ZP_03699117.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224601651|gb|EEG07831.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 478

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 15  AAGEIIERPSIAIKELIENSLD-------AESSRVETVIAGG-GKSFFQITDNGFGMTSE 66
           AA   I+  +  ++EL+ N LD       A    V   +  G G+ + +++D+G G+   
Sbjct: 355 AAPLTIDGHAGLLRELVANLLDNAIQYTPAG-GEVTVALQPGPGEVWLRVSDSGPGIPPA 413

Query: 67  EIPMAVQRHC 76
           E     +R  
Sbjct: 414 ERERVFERFY 423


>gi|212702046|ref|ZP_03310174.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098]
 gi|212674561|gb|EEB35044.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098]
          Length = 573

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 33  NSLDA--ESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+LDA  +  +V+      A GG    ++TDNG GM+ E I    +   ++K
Sbjct: 473 NALDAVPDGGKVDIACSQTADGGL-LVRVTDNGKGMSPEVIKHIFEPFYSTK 523


>gi|188532591|ref|YP_001906388.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99]
 gi|188027633|emb|CAO95483.1| DNA topoisomerase IV subunit B [Erwinia tasmaniensis Et1/99]
          Length = 631

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 79/210 (37%), Gaps = 29/210 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
           RP+   +E+I+NS+D   A  + RVE ++        ++ D+G GM      EE    + 
Sbjct: 32  RPNHLGQEVIDNSVDEALAGHAKRVEVILHPD--QSLEVIDDGRGMPVDIHPEEGVPAVE 89

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
           +   R H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 90  LIFCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRNAEVYEMAFENGDKV 148

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS- 183
           ++++    V   N GT V+            +F  S +   + ++ +++  A+  P V  
Sbjct: 149 QELTVTGTVAKRNTGTRVQFW-------PDESFFDSPRFSVSRLSHLLKAKAVLCPGVEI 201

Query: 184 -FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
            F     K+ +             E ++ +
Sbjct: 202 VFKDKLNKTEQSWCYADGLTDYLMEAVNGL 231


>gi|166713060|ref|ZP_02244267.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 653

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 35/124 (28%)

Query: 2   KIRKLSEKIINQIAAGEIIE---RPSI--------------AIKELIENSLDA--ESSRV 42
           ++R L + +   I  GE IE     +                +  L+ N+ DA      +
Sbjct: 361 RVRSLEDMLQRSI--GENIELELELASTPLVAIADANQLENVVLNLVINARDALQGQGTI 418

Query: 43  ET-----------VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK-ISD--DFSNIH 88
                         +  G      + DNG G+    +    +   T+K I +        
Sbjct: 419 RIQSEAYTAHNDPELDDGDYVAVNVIDNGSGIEPAILDQVFEPFFTTKPIGEGTGLGLSM 478

Query: 89  TFGF 92
           T+GF
Sbjct: 479 TYGF 482


>gi|153004717|ref|YP_001379042.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028290|gb|ABS26058.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 600

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
            +  +  L+ N+  A + R    +       G      ++D G G+  E +P   +   T
Sbjct: 489 LAQVVLNLLSNARTACAGRPGAGIRIATRRAGGDVEIVVSDGGKGIAPEHLPRIFEPFFT 548

Query: 78  SK 79
           +K
Sbjct: 549 TK 550


>gi|78042954|ref|YP_361359.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995069|gb|ABB13968.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 445

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++E  +   GK   ++TD G G+  E++P   +R  
Sbjct: 364 KLEVKLLD-GKLLIEVTDTGPGIPPEDLPYIFERFY 398


>gi|332140122|ref|YP_004425860.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550144|gb|AEA96862.1| DNA topoisomerase IV subunit B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 631

 Score = 42.3 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 76/206 (36%), Gaps = 25/206 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +S ++ ++        ++ D+G GM  +          
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHASSIKVILHED--QSLEVIDDGRGMPVDIHPEEGISGV 87

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
           E+ +  + H   K S+      + G  G  +  + A+S  + +  R   ++       +G
Sbjct: 88  ELIL-CKLHAGGKFSNKNYA-FSGGLHGVGISVVNALSNRVEVTIR-RDSSVYQIAFENG 144

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
           +K+  ++ +          R  F+  P    +  S +   + +   +R  A+  P +   
Sbjct: 145 DKVEDLQVIDTCGKRNTGTRVHFWPDP---QYFDSAKFSVSRLKHNLRAKAVLSPGLRIR 201

Query: 186 FSTIKSNRYKMNFQSTNGNFPERISQ 211
           F        +           + + Q
Sbjct: 202 F--DNKIAKESQEWFYEDGLKDYLYQ 225


>gi|308066844|ref|YP_003868449.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
 gi|305856123|gb|ADM67911.1| DNA gyrase subunit B [Paenibacillus polymyxa E681]
          Length = 636

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEE 67
          E+++NS+D   A     ++ V+     +   +TDNG G+   E
Sbjct: 44 EVVDNSIDEALAGYCDSIQVVVHED--NSVTVTDNGRGIPVSE 84


>gi|298294246|ref|YP_003696185.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296930757|gb|ADH91566.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 647

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 4   RKLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKS-FFQITD 58
           R +  ++  ++ A E+  R    +  L+ N+LDA   +   R+       G      + D
Sbjct: 527 RDIPAEL--KVLAEEV--RLEQVLVNLVSNALDALDGAGERRIAISARRDGPHVRIDVRD 582

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+             TSK
Sbjct: 583 TGTGVGEGMRAQMFDPFVTSK 603


>gi|239834194|ref|ZP_04682522.1| Sensor protein degS [Ochrobactrum intermedium LMG 3301]
 gi|239822257|gb|EEQ93826.1| Sensor protein degS [Ochrobactrum intermedium LMG 3301]
          Length = 412

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 18  EIIERPSIAIKELIENSL-DAESSRVETVIAG-GGKSFFQITDNGFGMTS 65
            +       ++E I N++  A +SR+       GG+   ++ DNG GM  
Sbjct: 311 TVATSLFRIVQEAINNAIRHAHASRLRVAFRNKGGRLHVEVADNGIGMDR 360


>gi|228983776|ref|ZP_04143973.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775971|gb|EEM24340.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 554

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAES----SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A +     +VE  I  G      + D G G+  EEI     +  ++K
Sbjct: 454 LIDNALEAVANCEKKQVEVKIQYGDTLIITVQDTGKGIQEEEIGALFTKGYSTK 507


>gi|229105410|ref|ZP_04236053.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|228677966|gb|EEL32200.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
          Length = 333

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N ++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNGIEAMSVGGTITIKVTVEDG--IVVQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|229099252|ref|ZP_04230183.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|229118264|ref|ZP_04247620.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228665094|gb|EEL20580.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228684070|gb|EEL38017.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
          Length = 333

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N ++A     +  ++  +  G     Q+ D G G+  ++IP   +   T+K
Sbjct: 242 LIKNGIEAMSVGGTITIKVTVEDG--IVVQVKDEGCGIPKDKIPKLNEAFYTTK 293


>gi|227498783|ref|ZP_03928923.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904235|gb|EEH90153.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 648

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A     +   I  G  +   + DNG G+  E
Sbjct: 54 VYEVIDNSIDEALAGYCDHILVEI--GEDNSITVVDNGRGIPVE 95


>gi|226227148|ref|YP_002761254.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090339|dbj|BAH38784.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 885

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 19/97 (19%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L  N+ DA        + T     G    +++D+G G+  E +P   +   T
Sbjct: 637 RLEQVLMNLAANARDAMPAGGCLTISTERTTAGDLRLRVSDSGAGIPPEVLPRVFEPFYT 696

Query: 78  SKISDDFSNIHTFGFRGEAL-----PSIGAVSHLTLM 109
           +K  +          RG  L      SI   +   ++
Sbjct: 697 TKTRE----------RGTGLGLAMVYSIVTAARGEIV 723


>gi|225028802|ref|ZP_03717994.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353]
 gi|224953886|gb|EEG35095.1| hypothetical protein EUBHAL_03081 [Eubacterium hallii DSM 3353]
          Length = 638

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   S ++ ++   G +  Q  DNG G+ 
Sbjct: 43 EIVDNAVDEHLAGYCSNIQVILDEDGTATIQ--DNGRGIP 80


>gi|188592230|ref|YP_001796828.1| senson histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|170938604|emb|CAP63591.1| putative SENSOR HISTIDINE KINASE with GAF and Pkinase domains
            [Cupriavidus taiwanensis LMG 19424]
          Length = 1722

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 7    SEKIINQIAAG-EIIE----RPSIAIKELIENSLDAESSR-------VETVIAGGGKSFF 54
              +++ ++AAG  ++E    +    +  LI N+LDA +         + T          
Sbjct: 1589 DVRVVARLAAGPAVVEADRVQLQQVVLNLITNALDAMAQTPPAQRELIVTSYREQDNVVV 1648

Query: 55   QITDNGFGMTSEEIPMAVQRHCTSK 79
             + D G G+  + +    +   T+K
Sbjct: 1649 SVQDGGAGIPDDVLDQLFEPFFTTK 1673


>gi|182419884|ref|ZP_02951122.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237668822|ref|ZP_04528806.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376253|gb|EDT73837.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237657170|gb|EEP54726.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 540

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 39/194 (20%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGK---SFFQITDNGFGMTSEEIPMAVQRHC 76
           I+ P+  I+E I NS DA+SS +   +              D+G GM   EI        
Sbjct: 21  IKNPNEIIREAISNSYDADSSNIWIKVKRSNIVDYELIF-KDDGKGMEINEIHSFFNLGD 79

Query: 77  TSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAM 136
           + KI  +          GE                      G +     ++I        
Sbjct: 80  SKKIVQNI---------GE-------------------KGLGTKTYFKSKEIKIRTKAVD 111

Query: 137 NPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV-----IRRMAIAYPKVSFTFSTIKS 191
           N G  V +++ +  +    + + +  VE +   D+     I    +  P+  F F +IK 
Sbjct: 112 NKGYTVIMKNPWDKLIN--DEIPTYTVEEDESVDIGTEITITGYIVDNPEKYFNFYSIKD 169

Query: 192 NRYKMNFQSTNGNF 205
                       N 
Sbjct: 170 YILWFTAGGNFKNI 183


>gi|119503630|ref|ZP_01625713.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
          HTCC2080]
 gi|119460692|gb|EAW41784.1| DNA topoisomerase IV subunit B [marine gamma proteobacterium
          HTCC2080]
          Length = 629

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  + +V+ V+   G     I DNG GM  +
Sbjct: 30 RPNHLAQEVIDNSVDEALAGHADQVDVVLHSTG--GISIQDNGRGMPVD 76


>gi|27904523|ref|NP_777649.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp
          (Baizongia pistaciae)]
 gi|31076740|sp|Q89B37|GYRB_BUCBP RecName: Full=DNA gyrase subunit B
 gi|27903920|gb|AAO26754.1| putative DNA gyrase subunit b [Buchnera aphidicola str. Bp
          (Baizongia pistaciae)]
          Length = 804

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I     +   I D+G G+ ++
Sbjct: 42 EVVDNSIDEALAGFCKNIIVTIHDD--NSISIQDDGRGIPTD 81


>gi|88703694|ref|ZP_01101410.1| two-component sensor histidine kinase [Congregibacter litoralis
           KT71]
 gi|88702408|gb|EAQ99511.1| two-component sensor histidine kinase [Congregibacter litoralis
           KT71]
          Length = 492

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 41  RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +    I    +   Q++DNG G+ S++IP   +R  
Sbjct: 403 EITIRVIEDAQRVQVQVSDNGDGIASQDIPRIFERFY 439


>gi|315282714|ref|ZP_07871058.1| sensor histidine kinase [Listeria marthii FSL S4-120]
 gi|313613639|gb|EFR87439.1| sensor histidine kinase [Listeria marthii FSL S4-120]
          Length = 346

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 25/77 (32%)

Query: 5   KLSEKIINQIA----AGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNG 60
            L + + N +     +GE+                     ++       GK    I DNG
Sbjct: 234 ILDQILSNALKYTESSGEV---------------------KIWCDTEESGKKVLHIRDNG 272

Query: 61  FGMTSEEIPMAVQRHCT 77
            G+  E++P   ++  T
Sbjct: 273 RGIKEEDLPRVFEQGFT 289


>gi|306966787|ref|ZP_07479448.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu009]
 gi|308355484|gb|EFP44335.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu009]
          Length = 485

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|306802383|ref|ZP_07439051.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu008]
 gi|308350846|gb|EFP39697.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu008]
          Length = 485

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|303242251|ref|ZP_07328739.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590239|gb|EFL59999.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 483

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENS---LDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           ER    I  +I+NS   ++  +  ++ ++     +   + +DNG G+  E++P    R  
Sbjct: 369 ERLRRVITNIIDNSKKYMNKSAGEIKIILRETQATIVIETSDNGSGIPKEDLPYVFDRFY 428


>gi|322436822|ref|YP_004219034.1| Heat shock protein Hsp90-like protein [Acidobacterium sp. MP5ACTX9]
 gi|321164549|gb|ADW70254.1| Heat shock protein Hsp90-like protein [Acidobacterium sp. MP5ACTX9]
          Length = 621

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 43/164 (26%)

Query: 19  IIERPSI----AIKELIENSLDA--------------ES----SRVETVIAGGGKSFFQI 56
           II          ++ELI NS DA              ++     R++  +   GK+   I
Sbjct: 17  IIHSLYSHPEIFLRELISNSSDALDKLRHLTLTDDVYKALPFDPRIDLELDEEGKTL-TI 75

Query: 57  TDNGFGMTSEEI-------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGAV 103
           +D G GM  E++         +  ++  S++S D             GF      S   V
Sbjct: 76  SDTGIGMNEEDLVSHLGTIARSGTKNFLSQLSGDAKKDSNLIGQFGVGF-----YSAFMV 130

Query: 104 S-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-NPGTIVEVR 145
           +  + ++SR        +    G+    + P      GT V + 
Sbjct: 131 ADKIEVVSRKAGEELAWRWISDGKTGFEITPAERLVAGTTVLLH 174


>gi|294996235|ref|ZP_06801926.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           210]
          Length = 224

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 101 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 155

Query: 74  RHC 76
           R  
Sbjct: 156 RFY 158


>gi|291548764|emb|CBL25026.1| DNA gyrase subunit B [Ruminococcus torques L2-14]
          Length = 644

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A    +++  I     +   +TDNG G+ 
Sbjct: 46 VYEIVDNAVDEALAGYCDKIQVDINKD--NSITVTDNGRGIP 85


>gi|255010140|ref|ZP_05282266.1| HSP90 family protein [Bacteroides fragilis 3_1_12]
 gi|313147938|ref|ZP_07810131.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136705|gb|EFR54065.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 588

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 21/76 (27%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----------ESSRVETVIAGGGKS 52
          I  LSE I +          P+  ++EL++N +DA           + R++  +   G  
Sbjct: 17 IALLSEHIYS---------NPNTFVRELLQNCVDAITALHNIDESYAGRIDVFLKEDG-- 65

Query: 53 FFQITDNGFGMTSEEI 68
               DNG G+  EE+
Sbjct: 66 SVVFQDNGIGLKEEEV 81


>gi|253565309|ref|ZP_04842764.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945588|gb|EES85995.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 30  LIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ + +++ +     ++ G + + +I DNG G+  E +        T+K
Sbjct: 346 LIKNARENDATDIRISAGLSSGERPYIRIEDNGTGIEQEVLDRIFIPFFTTK 397


>gi|237743164|ref|ZP_04573645.1| DNA gyrase subunit B [Fusobacterium sp. 7_1]
 gi|256027571|ref|ZP_05441405.1| DNA gyrase subunit B [Fusobacterium sp. D11]
 gi|289765530|ref|ZP_06524908.1| subunit B [Fusobacterium sp. D11]
 gi|229433460|gb|EEO43672.1| DNA gyrase subunit B [Fusobacterium sp. 7_1]
 gi|289717085|gb|EFD81097.1| subunit B [Fusobacterium sp. D11]
          Length = 635

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    ++E  I        ++ DNG G+ ++
Sbjct: 39 EIVDNSVDEALAGYCDKIEVKILPDNI--IEVVDNGRGIPTD 78


>gi|258513531|ref|YP_003189753.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777236|gb|ACV61130.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 184

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 30 LIENSLDAESSRVET-VIAGGGKSFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
          L  NS++A ++ +E  VI    K+    ++ D+G G+    +        T+K
Sbjct: 11 LARNSIEAGAANLEINVIEDPAKNLLKFEVKDDGRGIGENALNKITDPFYTTK 63


>gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 723

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 16  AGEII-----ERPSIAIKELIENSLDAESS----RVETVIAG-GGKSFFQITDNGFGMTS 65
           AG+++      R    +  L+ N+L    +     V       GG++  ++ D G G+ +
Sbjct: 585 AGDVVVVADRTRLVQVVGNLLGNAL--RHTPAPGTVTVRARRSGGEAVVEVADTGVGIPA 642

Query: 66  EEIPMAVQRH 75
           E++P    R 
Sbjct: 643 EDLPHVFDRF 652


>gi|215402548|ref|ZP_03414729.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 02_1987]
 gi|289744483|ref|ZP_06503861.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 02_1987]
 gi|289685011|gb|EFD52499.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 02_1987]
          Length = 485

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|220933197|ref|YP_002512096.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994507|gb|ACL71109.1| DNA gyrase, B subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 807

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   ++++ +I   G     + D+G G+  +
Sbjct: 47 EVVDNAIDEALAGYCNKIQVIIHSDG--SVSVQDDGRGIPVD 86


>gi|190893345|ref|YP_001979887.1| chemotaxis two-component sensor histidine kinase [Rhizobium etli
           CIAT 652]
 gi|190698624|gb|ACE92709.1| putative chemotaxis two-component sensor histidine kinase protein
           [Rhizobium etli CIAT 652]
          Length = 682

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLD-----------AE---SSRVETVIAG-GGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D           A    +  V       GG+    I D+G G
Sbjct: 394 TVIERLADPLVHLVRNSIDHGLEMPADRLAAGKTEAGTVILSARQAGGEVIISIKDDGRG 453

Query: 63  MTSE 66
           +  E
Sbjct: 454 INRE 457


>gi|196035646|ref|ZP_03103049.1| sensory box histidine kinase [Bacillus cereus W]
 gi|195991613|gb|EDX55578.1| sensory box histidine kinase [Bacillus cereus W]
          Length = 534

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAES----SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A +     +VE  I  G      + D G G+  EEI     +  ++K
Sbjct: 434 LIDNALEAVANCEKKQVEVKIQYGDTLIITVQDTGKGIQEEEIGALFTKGYSTK 487


>gi|124267982|ref|YP_001021986.1| PAS/PAC sensor signal transduction histidine kinase [Methylibium
           petroleiphilum PM1]
 gi|124260757|gb|ABM95751.1| PAS/PAC sensor signal transduction histidine kinase [Methylibium
           petroleiphilum PM1]
          Length = 480

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 30  LIENSLDAESSR--------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+ DA +SR        ++T    G +   ++ DNG G+ SE +        T+K
Sbjct: 380 LLQNACDAAASRAGESPVLWIDTE-QDGSRVRLRLRDNGPGIPSEHLTRIFDPFFTTK 436


>gi|119963753|ref|YP_945839.1| DNA gyrase subunit B [Arthrobacter aurescens TC1]
 gi|119950612|gb|ABM09523.1| DNA gyrase, B subunit [Arthrobacter aurescens TC1]
          Length = 692

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A   S +E  +   GG    ++ D+G G+  +
Sbjct: 65  VYEVVDNSVDEALAGYCSHIEVTLRADGG---VRVVDDGRGIPVD 106


>gi|156744122|ref|YP_001434251.1| CheA signal transduction histidine kinase [Roseiflexus castenholzii
           DSM 13941]
 gi|156235450|gb|ABU60233.1| CheA signal transduction histidine kinase [Roseiflexus castenholzii
           DSM 13941]
          Length = 741

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 24/75 (32%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVE---------------TVIAG---GGKSFFQITDN 59
           E++  P   +  LI N+LD     +E                 IA    GG+    + D+
Sbjct: 323 EVLTDP---MVHLIRNALDHG---IEPAEERERQGKPRQGLIEIAAQAHGGRVLISVRDD 376

Query: 60  GFGMTSEEIPMAVQR 74
           G GM  +++  A  R
Sbjct: 377 GRGMDPQQLREAAVR 391


>gi|84997852|ref|XP_953647.1| DNA topoisomerase II [Theileria annulata]
 gi|65304644|emb|CAI72969.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 922

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A   +R+   +   G    +++DNG G+  +
Sbjct: 142 EVLDNSVDEYLAGFCNRITVSLMKDG--SVEVSDNGRGIPCD 181


>gi|31791946|ref|NP_854439.1| two component system response sensor kinase membrane associated
           PHOR [Mycobacterium bovis AF2122/97]
 gi|121636682|ref|YP_976905.1| putative two component system response sensor kinase membrane
           associated phoR [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224989154|ref|YP_002643841.1| putative two component system response sensor kinase membrane
           associated [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260185651|ref|ZP_05763125.1| putative two component system response sensor kinase membrane
           associated protein [Mycobacterium tuberculosis CPHL_A]
 gi|260203947|ref|ZP_05771438.1| putative two component system response sensor kinase membrane
           associated protein [Mycobacterium tuberculosis K85]
 gi|289446323|ref|ZP_06436067.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           CPHL_A]
 gi|289573377|ref|ZP_06453604.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           K85]
 gi|31617533|emb|CAD93643.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE
           ASSOCIATED PHOR [Mycobacterium bovis AF2122/97]
 gi|121492329|emb|CAL70796.1| Possible two component system response sensor kinase membrane
           associated phoR [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772267|dbj|BAH25073.1| putative two component system response sensor kinase membrane
           associated [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289419281|gb|EFD16482.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           CPHL_A]
 gi|289537808|gb|EFD42386.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           K85]
          Length = 485

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|15607898|ref|NP_215272.1| two component system response sensor kinase membrane associated
           PHOR [Mycobacterium tuberculosis H37Rv]
 gi|148660535|ref|YP_001282058.1| putative two component system response sensor kinase membrane
           associated PhoR [Mycobacterium tuberculosis H37Ra]
 gi|307083273|ref|ZP_07492386.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu012]
 gi|1550636|emb|CAB02401.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE
           ASSOCIATED PHOR [Mycobacterium tuberculosis H37Rv]
 gi|148504687|gb|ABQ72496.1| putative two component system response sensor kinase membrane
           associated PhoR [Mycobacterium tuberculosis H37Ra]
 gi|308367021|gb|EFP55872.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu012]
          Length = 485

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|15840173|ref|NP_335210.1| sensor histidine kinase [Mycobacterium tuberculosis CDC1551]
 gi|148821964|ref|YP_001286718.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis F11]
 gi|215410324|ref|ZP_03419132.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 94_M4241A]
 gi|215426011|ref|ZP_03423930.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T92]
 gi|215429608|ref|ZP_03427527.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis EAS054]
 gi|215444891|ref|ZP_03431643.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T85]
 gi|219556619|ref|ZP_03535695.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T17]
 gi|253797704|ref|YP_003030705.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231073|ref|ZP_04924400.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis C]
 gi|254363700|ref|ZP_04979746.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis str. Haarlem]
 gi|254549725|ref|ZP_05140172.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260199773|ref|ZP_05767264.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T46]
 gi|289442161|ref|ZP_06431905.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T46]
 gi|289553016|ref|ZP_06442226.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 605]
 gi|289568710|ref|ZP_06448937.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T17]
 gi|289749268|ref|ZP_06508646.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T92]
 gi|289752807|ref|ZP_06512185.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis EAS054]
 gi|289756846|ref|ZP_06516224.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T85]
 gi|297633267|ref|ZP_06951047.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730250|ref|ZP_06959368.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN R506]
 gi|298524248|ref|ZP_07011657.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 94_M4241A]
 gi|306774876|ref|ZP_07413213.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu001]
 gi|306781393|ref|ZP_07419730.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu002]
 gi|306783418|ref|ZP_07421740.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu003]
 gi|306787789|ref|ZP_07426111.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu004]
 gi|306792162|ref|ZP_07430464.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu005]
 gi|306796523|ref|ZP_07434825.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu006]
 gi|306806591|ref|ZP_07443259.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu007]
 gi|306970981|ref|ZP_07483642.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu010]
 gi|307078712|ref|ZP_07487882.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu011]
 gi|313657575|ref|ZP_07814455.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN V2475]
 gi|13880326|gb|AAK45024.1| sensor histidine kinase [Mycobacterium tuberculosis CDC1551]
 gi|124600132|gb|EAY59142.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis C]
 gi|134149214|gb|EBA41259.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis str. Haarlem]
 gi|148720491|gb|ABR05116.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis F11]
 gi|253319207|gb|ACT23810.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 1435]
 gi|289415080|gb|EFD12320.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T46]
 gi|289437648|gb|EFD20141.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 605]
 gi|289542464|gb|EFD46112.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T17]
 gi|289689855|gb|EFD57284.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T92]
 gi|289693394|gb|EFD60823.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis EAS054]
 gi|289712410|gb|EFD76422.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T85]
 gi|298494042|gb|EFI29336.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 94_M4241A]
 gi|308216542|gb|EFO75941.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu001]
 gi|308325842|gb|EFP14693.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu002]
 gi|308331752|gb|EFP20603.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu003]
 gi|308335540|gb|EFP24391.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu004]
 gi|308339308|gb|EFP28159.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu005]
 gi|308343021|gb|EFP31872.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu006]
 gi|308346906|gb|EFP35757.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu007]
 gi|308359437|gb|EFP48288.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu010]
 gi|308363344|gb|EFP52195.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu011]
 gi|323720789|gb|EGB29859.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905020|gb|EGE51953.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           W-148]
 gi|328457483|gb|AEB02906.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 4207]
          Length = 485

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDAILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|57238515|ref|YP_179646.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           RM1221]
 gi|86149318|ref|ZP_01067549.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596748|ref|ZP_01099985.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|205356663|ref|ZP_03223425.1| putative two component sensor [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218563093|ref|YP_002344872.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|57167319|gb|AAW36098.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           RM1221]
 gi|85840100|gb|EAQ57358.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88191589|gb|EAQ95561.1| sensory box sensor histidine kinase, putative [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360799|emb|CAL35599.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|205345520|gb|EDZ32161.1| putative two component sensor [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|284926699|gb|ADC29051.1| putative two-component sensor [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315058946|gb|ADT73275.1| Putative two-component sensor histidine kinase [Campylobacter
           jejuni subsp. jejuni S3]
 gi|315930131|gb|EFV09258.1| sensory box protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 403

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 302 LILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 357


>gi|320451329|ref|YP_004203425.1| DNA gyrase subunit B [Thermus scotoductus SA-01]
 gi|320151498|gb|ADW22876.1| DNA gyrase, subunit B [Thermus scotoductus SA-01]
          Length = 635

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 28 KELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          KE+++N++D   A  ++ + T +   G     + DNG G+  +
Sbjct: 38 KEILDNAVDEALAGYATEIVTTLNPDG--SLTVEDNGRGIPVD 78


>gi|307268211|ref|ZP_07549596.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4248]
 gi|306515480|gb|EFM84010.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX4248]
 gi|329576947|gb|EGG58429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecalis TX1467]
          Length = 487

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 377 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 423


>gi|260774984|ref|ZP_05883884.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609074|gb|EEX35233.1| DNA gyrase subunit B [Vibrio coralliilyticus ATCC BAA-450]
          Length = 805

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I         + D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--CSVSVRDDGRGIPTEMHPEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++         Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKQVTLTIHRGGQIHTQTYHHGEPQAPLSVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  E+R      P+      + +   +++   +R ++     VS      +    K
Sbjct: 159 ETDKTGTEIRF----WPSE-ETFSNTEFHYDILAKRLRELSFLNSGVSIKL-VDEREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +  +             +N G     Y F N
Sbjct: 213 SDHFMYEGGIQAFVEHLNTNKTPIIEKVFHFNAEREDGIAVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|269125855|ref|YP_003299225.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310813|gb|ACY97187.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
          43183]
          Length = 696

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   +++  V+   G   +++ DNG G+  +
Sbjct: 53 EIVDNSVDEALAGHCTKISVVLHADG--SYEVCDNGRGIPVD 92


>gi|254486348|ref|ZP_05099553.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
 gi|214043217|gb|EEB83855.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
          Length = 654

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 31  IENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + N++   DA S  +       GK  F +TD G G++ E      QR  
Sbjct: 546 VNNAIKFTDAGSICLSVR-KEVGKVVFSVTDTGRGISEENREKVFQRFH 593


>gi|53802866|ref|YP_115417.1| DNA gyrase subunit B [Methylococcus capsulatus str. Bath]
 gi|53756627|gb|AAU90918.1| DNA gyrase, B subunit [Methylococcus capsulatus str. Bath]
          Length = 804

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    R+   +         ++D+G G+  +
Sbjct: 45 EVVDNSIDEAMAGYCKRICVTVHED--ESVTVSDDGRGIPVD 84


>gi|319943518|ref|ZP_08017800.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC
           51599]
 gi|319743333|gb|EFV95738.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Lautropia mirabilis ATCC
           51599]
          Length = 714

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 21  ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           E P   I+E+I+N+ D A    +  ++  +   G+   ++TD+G G+      +E    I
Sbjct: 81  ENPLHIIQEVIDNAADEALGGYARHIDVRLFKDGR--VEVTDDGRGIPVGLHPDEGVPVI 138

Query: 69  PMAVQR-HC 76
            +   R H 
Sbjct: 139 EIVFTRLHA 147


>gi|288957937|ref|YP_003448278.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910245|dbj|BAI71734.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 403

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 30  LIENSL---DAESSRVETVIAGG--GKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L   +A + RV   +  G  G+    ++ D G G+  E +    +   
Sbjct: 148 LVDNALRYTEAGAIRVRCRLDAGPDGERLAIEVQDTGIGIPPEHLDRIFEEFH 200


>gi|146309307|ref|YP_001189772.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
 gi|145577508|gb|ABP87040.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
          Length = 604

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAES-----SRVETVIAGGGKSF-FQI 56
           IR L +  +  + AGE   R    +  L+ N+LDA S      R+   +    +     +
Sbjct: 468 IRDLPDATLW-VQAGE--TRLRQVLGNLLGNALDALSDRAPPRRIWISVQQQDQHLELLL 524

Query: 57  TDNGFGMTSEEIPMAVQRHCTSK 79
            DNG G ++E +  A +   T+K
Sbjct: 525 RDNGAGFSAESLARAREPFFTTK 547


>gi|220932011|ref|YP_002508919.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
 gi|219993321|gb|ACL69924.1| DNA gyrase, B subunit [Halothermothrix orenii H 168]
          Length = 637

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR---------H 75
           E+++NS+D   A    ++E  I     +   + D G G+ +EE P              H
Sbjct: 45  EVVDNSIDEYLAGYGDKIEVTINED--NSITVEDWGRGIPAEEHPETGLPAAQVVMTTLH 102

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVR 132
              K +++   + + G  G  +  + A+S  L L +    N    +      K    +
Sbjct: 103 AGGKFNNNSYKV-SGGLHGVGISVVNALSEWLELTTYWNGNEYYQRYERGYPKTKFQK 159


>gi|313632438|gb|EFR99461.1| histidine protein kinase SaeS [Listeria seeligeri FSL N1-067]
          Length = 347

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 30  LIENSL---DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQR 74
           LIEN+L   DA  + +E  I      + F + D G G++SE+IP   +R
Sbjct: 244 LIENALKFSDAG-TTIELKITSTDEATMFFVKDYGQGISSEDIPRIFER 291


>gi|294497155|ref|YP_003560855.1| malate two-component sensor histidine kinase MalK [Bacillus
           megaterium QM B1551]
 gi|294347092|gb|ADE67421.1| malate two-component sensor histidine kinase MalK [Bacillus
           megaterium QM B1551]
          Length = 528

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 16  AGEIIERPS---------IAIKELIENSLDA----ESSRVETV-IAGGGKSFFQITDNGF 61
           A E+I  PS           I  LI+N++D+     S +V  + +    K   Q+TD G 
Sbjct: 403 ADEVIPEPSDPQVTHHLITIIGNLIDNAIDSVCHQASKKVSVMLVYKNNKLTIQVTDTGC 462

Query: 62  GMTSEEIPMAVQRHCTSK 79
           G+ S+ +    ++  ++K
Sbjct: 463 GIPSDTMNQIFKKGFSTK 480


>gi|288959569|ref|YP_003449910.1| DNA gyrase subunit B [Azospirillum sp. B510]
 gi|288911877|dbj|BAI73366.1| DNA gyrase subunit B [Azospirillum sp. B510]
          Length = 827

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A    +VE V+   G     + DNG G+ ++
Sbjct: 55 VYEVVDNAIDEALAGYCDKVEVVLNADG--SVTVRDNGRGIPTD 96


>gi|255020225|ref|ZP_05292294.1| Signal transduction histidine kinase, NtrY [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970367|gb|EET27860.1| Signal transduction histidine kinase, NtrY [Acidithiobacillus
           caldus ATCC 51756]
          Length = 751

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 13/65 (20%)

Query: 30  LIENSLDA------ESS----RVETVIA-GGGKSFFQ--ITDNGFGMTSEEIPMAVQRHC 76
           L+ N+LDA       ++    R+ + +    G++  +  ++DNG G  +E +    + + 
Sbjct: 634 LLRNALDALAALGESATPKVIRIRSRVRAEAGQAVLEWEVSDNGPGFPAELLARVFEPYV 693

Query: 77  TSKIS 81
           TSK+ 
Sbjct: 694 TSKVK 698


>gi|254500449|ref|ZP_05112600.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
 gi|222436520|gb|EEE43199.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
          Length = 369

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 23  PSIAIKELIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            + A+ EL +N+LDA   +  V   +   G      + D G G+ +       +   T+K
Sbjct: 255 LTNALVELGQNALDALDGAGEVRLSLEEVGNRVEICVQDTGPGLDARTRSRLFEPFYTTK 314


>gi|189502315|ref|YP_001958032.1| heat shock protein 90 [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497756|gb|ACE06303.1| hypothetical protein Aasi_0943 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 603

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 79/580 (13%), Positives = 173/580 (29%), Gaps = 94/580 (16%)

Query: 27  IKELIENSLDAE------SS-----------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA       +S           R++  I         I+D G GMT+EEI 
Sbjct: 30  LRELVANAVDATQKLKQLASLGEYDGEVSKLRIQITINE-KLKTLTISDQGLGMTAEEIK 88

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSR--PPQNNTGA 119
             + +   S       K  D        GF G    S   V+  + ++++       +  
Sbjct: 89  EYINQVAFSGATAFVEKYKDKGQQQQLIGFFGLGFYSAFMVADRVDIITKSYQKDAESVH 148

Query: 120 QIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
                       + V    GT + +        +     K      + I +++ R     
Sbjct: 149 WTCDGSTAFELRKAVKKEVGTDIVLHL---NADSEEFLQK------HKIKEILNRYCKFL 199

Query: 180 P-KVSFTFSTIKSNRYKMNFQST---NGNFPERISQVIGEDFINNAVELNEKSNEITLQG 235
           P ++ F    I + +       +     ++ +   ++                    L G
Sbjct: 200 PVEIEFDGEVINNTQPIWIKSPSELKEEDYLKFYKELYPFSPDPLFWIHLNVDYPFNLTG 259

Query: 236 YTGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQV 295
               P   +          N   +Q       I     + +P    P ++LL  +     
Sbjct: 260 VLYFPQVTQK----LEHSSNK--IQLYAKQVFITEEVKDIVP----PFLMLLHGVIDSPD 309

Query: 296 DVNVHPAKSYIRFRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQDNAPKTHL 355
                         N   I  +I + +   +++        L KK   S+ +        
Sbjct: 310 IPLNVSRSYLQADSNVKKINTYITKKVADKLDE--------LFKKDRKSYEEKWPSIELF 361

Query: 356 PKYATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIH- 414
            KY      T++K + +         + S+  T SE  + V+E +    Q  I     + 
Sbjct: 362 VKYGML---TEDKFYEKAKDFVLFKTVDSEYFTLSEYPERVKEKQTDSEQHTIILYANNV 418

Query: 415 ---QNYIISQTTDGLVIVDQHAAHERLIFEKMRQDFNSTKITSQTLLTPEIIDLLEGECA 471
                YI +    G  ++      +    E + +  +  +  S      + +     + A
Sbjct: 419 DKQDLYIQACKRRGFDVLLFDGQLDSHFLETLERKLDKVRFKSVDAEPVDKLIGKSEQQA 478

Query: 472 LIMEHDED--LHRLGIKAERFGPNAIAIREI--------PAILSKKNIPQLLRDIIDEII 521
            +++  E   L  +    ++   +A  +  +        P +++     + L  +     
Sbjct: 479 SLLDEKEQNKLQDI---YKQAIRDATVVWSVVPMASDELPVVITVPEFVKRLHAMAQLQP 535

Query: 522 DSSTTYTLQDRIENILATMACYGSIRSGRKMQSIEMNRLL 561
           ++     LQ +            +I +   +      +LL
Sbjct: 536 NAGMPPMLQLQ-----------AAINANHPL----AKKLL 560


>gi|197249721|ref|YP_002149219.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213424|gb|ACH50821.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 543

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK ++
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAE 499


>gi|163788048|ref|ZP_02182494.1| sensor histidine kinase [Flavobacteriales bacterium ALC-1]
 gi|159876368|gb|EDP70426.1| sensor histidine kinase [Flavobacteriales bacterium ALC-1]
          Length = 407

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 30  LIENSLDAES--SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           L+ N++   S  + ++  I     +   ++ DNG G+  ++      R+
Sbjct: 307 LVHNAIKYSSENTIIDIDIEQDKLTTVFRVKDNGIGIPKKDQKNIFNRY 355


>gi|114704720|ref|ZP_01437628.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506]
 gi|114539505|gb|EAU42625.1| DNA gyrase subunit B [Fulvimarina pelagi HTCC2506]
          Length = 812

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     ++DNG G+ 
Sbjct: 50 VYEVVDNAIDEALAGHADHVTVTLNADG--SCSVSDNGRGIP 89


>gi|254249802|ref|ZP_04943122.1| ATP-binding region, ATPase-like [Burkholderia cenocepacia PC184]
 gi|124876303|gb|EAY66293.1| ATP-binding region, ATPase-like [Burkholderia cenocepacia PC184]
          Length = 521

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 25/99 (25%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVIA-- 47
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+    A  
Sbjct: 374 RIRDEGVRLD---VN-IAPGTTVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIETAET 429

Query: 48  -------GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                    G+    + D+G G+  + +P   +   T+K
Sbjct: 430 SDADDATDAGRVRLTVADSGAGIAPDVLPHLFEPFVTTK 468


>gi|110635929|ref|YP_676137.1| DNA gyrase subunit B [Mesorhizobium sp. BNC1]
 gi|110286913|gb|ABG64972.1| DNA gyrase subunit B [Chelativorans sp. BNC1]
          Length = 815

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +S V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGYASLVTVSLNPDG--SCTVTDNGRGIPTD 91


>gi|294627016|ref|ZP_06705606.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598678|gb|EFF42825.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 651

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G     ++ DNG G+ +  + 
Sbjct: 395 LENVVLNLVINARDALKGQGTIRIQSATYTAHNDPELDDGDYVAVKVIDNGSGIEAAILD 454

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 455 QVFEPFFTTKPIGEGTGLGLSMTYGF 480


>gi|254876139|ref|ZP_05248849.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842160|gb|EET20574.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 424

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 31  IENSLD-AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKIS 81
           IEN+   A S  V   I    K   Q++  DNG G++  ++         S I+
Sbjct: 328 IENAFKYAGS--VSISIIEYDKKVIQVSFVDNGPGISENDLKKVFTPFFRSNIA 379


>gi|253581066|ref|ZP_04858326.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847602|gb|EES75572.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 641

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A   + ++ VI     +   + DNG G+ 
Sbjct: 42 VYEIVDNAVDEALAGFCTEIQVVINPD--NSITVVDNGRGIP 81


>gi|241667594|ref|ZP_04755172.1| two-component sensor [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 413

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 31  IENSLD-AESSRVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKIS 81
           IEN+   A S  V   I    K   Q++  DNG G++  ++         S I+
Sbjct: 317 IENAFKYAGS--VSISIIEYDKKVIQVSFVDNGPGISENDLKKVFTPFFRSNIA 368


>gi|225386349|ref|ZP_03756113.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
          DSM 15981]
 gi|225047531|gb|EEG57777.1| hypothetical protein CLOSTASPAR_00093 [Clostridium asparagiforme
          DSM 15981]
          Length = 638

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +E  I     +   + D+G G+ 
Sbjct: 39 VYEIVDNAVDEALAGYCDSIEVTINED--NSITVIDDGRGIP 78


>gi|71909557|ref|YP_287144.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71849178|gb|AAZ48674.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 448

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGG-----KSFFQITDNG 60
           L   +    ++G+        +  L++N+ DA ++R +  +   G      +  + TDNG
Sbjct: 329 LPPDLRCSGSSGQ----LQQVVMNLVQNASDALANRADARLQVSGSVENAMAVLRFTDNG 384

Query: 61  FGMTSEEIPMAVQRHCTSK 79
            G+  E +    +   T+K
Sbjct: 385 PGIPEEHLSRLFEPFFTTK 403


>gi|299141987|ref|ZP_07035121.1| DNA topoisomerase IV [Prevotella oris C735]
 gi|298576449|gb|EFI48321.1| DNA topoisomerase IV [Prevotella oris C735]
          Length = 660

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 65/246 (26%), Gaps = 35/246 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A  +R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 60  LKEVIDNSIDEFKMKAG-NRIEIEVEDN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 116

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S               +K       
Sbjct: 117 DSKAFK-KSVGLNGVGIKAVNALSS-----HFEVKSFRDGKVRELTFEKGVKKSDKTLDT 170

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +                K      +++  ++R        ++          +
Sbjct: 171 NDENGTYIYFE-------PDNTLFKDYSFHNDIVETMLRNYTYLNSGLTIMYNGRRIKSR 223

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           +    +   +   +    I  +IGED        N+   E                    
Sbjct: 224 NGLADLLNDNMTNDGLYPIVHIIGEDIEIAFTHTNQYGEEYHS---FVNGQHTTQGGTHQ 280

Query: 251 YVFING 256
             F   
Sbjct: 281 SAFKEH 286


>gi|298251933|ref|ZP_06975736.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
 gi|297546525|gb|EFH80393.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
          Length = 464

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA     ++       G     +I DNG G+  +      +   T+K
Sbjct: 365 LLDNAIDALQGHGQITISTWQDGAFVCVEIVDNGPGIPQDIQTRIFEPFFTTK 417


>gi|170784715|gb|ACB37702.1| Hsp90 [Microcystis aeruginosa NIES-298]
          Length = 657

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI NS+DA S                   +   I    ++   ITDNG GMT+EEI 
Sbjct: 32  LRELISNSVDAISKLKMASLAGEARGEVPEPEINLAIDKENRTL-SITDNGIGMTAEEIK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVS-HLTL--MSRPPQNN 116
             + +   S          K ++D       GF      S   V+  + +  +S      
Sbjct: 91  KYINQVAFSSAEEFINKYQKSANDLIGHFGLGF-----YSAFMVAKKVEIDTLSYQEGAT 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVR 145
                     +           GT + + 
Sbjct: 146 PVHWCCDGSPEFELTDSSRSQIGTTITLT 174


>gi|75675391|ref|YP_317812.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420261|gb|ABA04460.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 486

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 23/94 (24%)

Query: 30  LIENSL--------------DAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAV 72
           L+EN++              DA ++    +I     G +    +TD+G G+   +   AV
Sbjct: 359 LVENAIKYGQPKPASPPLGADAVAADATILIEARHEGDRIILAVTDHGSGIPEADRKRAV 418

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
           +R              T    G  L    AV+ L
Sbjct: 419 ERFV------RLETSRTLAGSGLGLSLASAVARL 446


>gi|308069566|ref|YP_003871171.1| Anti-sigma F factor (stage II sporulation protein AB)
           [Paenibacillus polymyxa E681]
 gi|310642623|ref|YP_003947381.1| anti-sigma f factor [Paenibacillus polymyxa SC2]
 gi|3287906|sp|O32721|SP2AB_PAEPO RecName: Full=Anti-sigma F factor; AltName: Full=Stage II
           sporulation protein AB
 gi|2529266|gb|AAB81185.1| spoIIAB gene product [Paenibacillus polymyxa]
 gi|305858845|gb|ADM70633.1| Anti-sigma F factor (Stage II sporulation protein AB)
           [Paenibacillus polymyxa E681]
 gi|309247573|gb|ADO57140.1| Anti-sigma F factor [Paenibacillus polymyxa SC2]
          Length = 151

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 22  RPSIAIKELIENSL----DAESS---RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
                + E + NS+    D++ S    ++  I     +   + D G G+  E++ +A Q 
Sbjct: 44  DLKTVVSEAVTNSIIHGYDSDPSGVVTIKVGIEADVITLV-VEDAGRGI--EDLELAKQP 100

Query: 75  HCTSKISDDFSNIHTFGF 92
             TSK   +       GF
Sbjct: 101 LYTSK--PELER-SGMGF 115


>gi|27530054|dbj|BAC53882.1| DNA gyrase B subunit [Legionella cherrii]
          Length = 281

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 70/272 (25%), Gaps = 45/272 (16%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I         + D+G G+      EE   A +      H
Sbjct: 7   EVVDNSIDEALAGHCKEIFVTIHSD--ESITVKDDGRGIPVDIHKEEGRSAAEVIMTVLH 64

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISS---- 130
              K  D+   + + G  G  +  + A+S  L L  R                       
Sbjct: 65  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEELHLTVRRHGKIHEQHYRNGVPDAPMAETG 123

Query: 131 ------VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT---DVIRRMAIAYPK 181
                  +             +  + I A+     S       I    +  +R    + +
Sbjct: 124 DATTTGTQIWFKPSAETFSNIEFHYDILAKRLRELSYLNSGVCIHLYDERSQRQDTFHYE 183

Query: 182 ---VSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
               +F     K+    M    +     + I   +   + ++  E               
Sbjct: 184 GGITAFVEHLNKNKNVIMPAVFSMTAEKDNIVVELSMQWNDSYQETLYCFTN-------- 235

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRT 270
               N    +        R    + + + I  
Sbjct: 236 ----NIPQRDGGTHMAGFRAALTRTLNNYIEN 263


>gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 581

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKS--FFQITD 58
           KL E I + I + E  +     +  L++N++  + +     +  ++           + D
Sbjct: 460 KLPENIAH-ILSNE--DSLLQIMINLLDNAI--KYTPEGGTISIMVEE-TLENVLITVAD 513

Query: 59  NGFGMTSEEIPMAVQRHC 76
           NG G+  +E+    +R  
Sbjct: 514 NGIGIAEDELDRIFERFY 531


>gi|312953004|ref|ZP_07771857.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0102]
 gi|310629033|gb|EFQ12316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0102]
 gi|315153927|gb|EFT97943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0031]
          Length = 514

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 404 VIAPLYRIVKELNEN-IGKHADAEIGKVTVEIDNAEIQLI-VEDDGVGV 450


>gi|307294397|ref|ZP_07574241.1| Heat shock protein Hsp90-like protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880548|gb|EFN11765.1| Heat shock protein Hsp90-like protein [Sphingobium chlorophenolicum
           L-1]
          Length = 626

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 39/131 (29%)

Query: 27  IKELIENSLDA------------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                     R+   +    +    + DNG GM+  E+
Sbjct: 37  LRELISNAADACEKLRYELLSDPALAGEDGQPRITVTLDPDTRQLI-VEDNGIGMSEVEL 95

Query: 69  PMAV------------QRHCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPP 113
             A+            +R   +K  +    I  F  GF      S   V+  + + SR  
Sbjct: 96  AEALGTIARSGTRAFMERVAAAKEGEGAQLIGQFGVGF-----YSAFMVADRVDVFSRRA 150

Query: 114 QNNTGAQIAIS 124
             +T A  A  
Sbjct: 151 GADTAAHWASD 161


>gi|295689649|ref|YP_003593342.1| DNA topoisomerase IV subunit B [Caulobacter segnis ATCC 21756]
 gi|295431552|gb|ADG10724.1| DNA topoisomerase IV, B subunit [Caulobacter segnis ATCC 21756]
          Length = 755

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  +  +E  +   G  F  + D+G GM  +
Sbjct: 151 EVLDNSMDEAVAGFAKTIEVKLDADG--FLSVKDDGRGMPVD 190


>gi|295108649|emb|CBL22602.1| DNA gyrase subunit B [Ruminococcus obeum A2-162]
          Length = 641

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A   + ++  I     +   + DNG G+ 
Sbjct: 42 VYEIVDNAVDEALAGFCTEIQVTINPD--NSITVVDNGRGIP 81


>gi|297565508|ref|YP_003684480.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849957|gb|ADH62972.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 425

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 21/80 (26%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +R +  I  L+ N++    A  + +   +   GK    +++D G G+  E +P    R  
Sbjct: 313 DRLTQIISNLLHNAVAHTPAGGT-ITVEVEARGKEVAVRVSDTGPGIPEEALPRVFDRF- 370

Query: 77  TSKISDDFSNIHTFGFRGEA 96
                          FR EA
Sbjct: 371 ---------------FRAEA 375


>gi|268591186|ref|ZP_06125407.1| swarming motility regulation sensor protein RssA [Providencia
           rettgeri DSM 1131]
 gi|291313418|gb|EFE53871.1| swarming motility regulation sensor protein RssA [Providencia
           rettgeri DSM 1131]
          Length = 453

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 16/57 (28%)

Query: 30  LIENSLDAESS------RVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++           +++ ++      GG     + DNG G+  +   +   R  
Sbjct: 357 LLENAI----KYCPEKGKIKVILKDLTPFGGT--ISVQDNGRGIPEDSRQLIFSRFY 407


>gi|240144353|ref|ZP_04742954.1| sensor histidine kinase [Roseburia intestinalis L1-82]
 gi|257203602|gb|EEV01887.1| sensor histidine kinase [Roseburia intestinalis L1-82]
          Length = 495

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+++ ++P    R  
Sbjct: 404 INIRIKDVG-DFIQVEIEDNGRGISARDLPYIFDRFY 439


>gi|154687025|ref|YP_001422186.1| hypothetical protein RBAM_025970 [Bacillus amyloliquefaciens FZB42]
 gi|154352876|gb|ABS74955.1| LytS [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 20  IERPSIAIKELIENSL--------DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPM 70
           IE P   ++ L+EN+L        D+ +  V   +   G+S   ++ DNG G+  E + +
Sbjct: 470 IEIPPFVLQILVENALRHAFSRKQDSCA--VNVSVVSAGQSVLMRVGDNGRGIDPELLSV 527

Query: 71  AVQR 74
              R
Sbjct: 528 LGNR 531


>gi|153812024|ref|ZP_01964692.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
 gi|149831923|gb|EDM87009.1| hypothetical protein RUMOBE_02417 [Ruminococcus obeum ATCC 29174]
          Length = 641

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A   + ++  I     +   + DNG G+ 
Sbjct: 42 VYEIVDNAVDEALAGFCTEIQVTINPD--NSITVVDNGRGIP 81


>gi|222056453|ref|YP_002538815.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565742|gb|ACM21714.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 551

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 39  SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +S +      G     ++ DNG GM  +++    +   T+K
Sbjct: 468 ASGISV----GDLIKIEVIDNGMGMNPQDVKNVFEPFFTTK 504


>gi|108946656|gb|ABG23676.1| gyrase subunit B [Leptospira noguchii]
 gi|108946658|gb|ABG23677.1| gyrase subunit B [Leptospira noguchii]
 gi|108946662|gb|ABG23679.1| gyrase subunit B [Leptospira noguchii]
 gi|108946664|gb|ABG23680.1| gyrase subunit B [Leptospira noguchii]
          Length = 137

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIIISILPDNI--IEVKDNGRGIPVD 69


>gi|6502512|gb|AAF14340.1|U86303_1 topoisomerase IV ParE subunit [Caulobacter crescentus CB15]
 gi|2749947|gb|AAC38044.1| DNA topoisomerase IV ParE subunit [Caulobacter crescentus CB15]
          Length = 667

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  +  +E  +   G  F  + D+G GM  +
Sbjct: 63  EVLDNSMDEAVAGFAKTIEVKLDADG--FLSVKDDGRGMPVD 102


>gi|21228523|ref|NP_634445.1| chaperone protein [Methanosarcina mazei Go1]
 gi|20907010|gb|AAM32117.1| Chaperone protein [Methanosarcina mazei Go1]
          Length = 982

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 17/59 (28%)

Query: 22  RPSIAIKELIENSLDA-------------ESS-RVETVIAGGGKSFFQITDNGFGMTSE 66
            P +A++EL++NS+DA                  +E  +         + DNG GM  E
Sbjct: 368 DPVVALRELLQNSVDAVRYRESLEKRDGNGYRPSIEVSLKNN--ELI-VEDNGIGMDEE 423


>gi|16126217|ref|NP_420781.1| DNA topoisomerase IV subunit B [Caulobacter crescentus CB15]
 gi|221234989|ref|YP_002517425.1| DNA topoisomerase IV subunit B [Caulobacter crescentus NA1000]
 gi|13638361|sp|O54479|PARE_CAUCR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
           Full=Topoisomerase IV subunit B
 gi|13423439|gb|AAK23949.1| topoisomerase IV, subunit B [Caulobacter crescentus CB15]
 gi|220964161|gb|ACL95517.1| topoisomerase IV subunit B [Caulobacter crescentus NA1000]
          Length = 695

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  +  +E  +   G  F  + D+G GM  +
Sbjct: 91  EVLDNSMDEAVAGFAKTIEVKLDADG--FLSVKDDGRGMPVD 130


>gi|332877012|ref|ZP_08444765.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332685120|gb|EGJ57964.1| DNA gyrase, B subunit [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 657

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + DNG G+  +
Sbjct: 48 VYEVLDNSIDEALAGYCDMIAVTINED--NSITVEDNGRGIPVD 89


>gi|300790350|ref|YP_003770641.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299799864|gb|ADJ50239.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 943

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 17  GEIIERPSIAIKELIENSLDAESSRVETVIAGG----GKSFFQITDNGFGMTSEEIPMAV 72
           GE +      + EL+EN+    +      +A      G    +I D+G GM   EI    
Sbjct: 559 GEAVNDLVHVVSELLENATRYSADE-TVTVASAETHDGDWQIEIIDHGAGMPQAEIDRTN 617

Query: 73  QRHC 76
            R  
Sbjct: 618 ARLA 621


>gi|294102629|ref|YP_003554487.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
 gi|293617609|gb|ADE57763.1| DNA gyrase, B subunit [Aminobacterium colombiense DSM 12261]
          Length = 634

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++  VI         + DNG G+ +E
Sbjct: 42 VYEVVDNSIDEAIAGYCDKISVVIYED--ESVSVADNGRGIPTE 83


>gi|257838318|gb|ACV71149.1| gyrase B [Bacteroides uniformis]
          Length = 458

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS D   A     +E  I     +   + DNG G+  +
Sbjct: 2  VYEVVDNSFDEALAGYCDHIEVTINED--NSITVQDNGRGIPVD 43


>gi|187933575|ref|YP_001884658.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721728|gb|ACD22949.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum B str. Eklund 17B]
          Length = 465

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMA---VQRHCTSK 79
            V  +   G +     + DNG G++  ++P       +   SK
Sbjct: 378 NVSVIFNQGEEDLKIIVEDNGCGISKSDLPKVKEKFYKGANSK 420


>gi|81251098|gb|ABB69895.1| DNA gyrase subunit B [Nitrosomonas sp. CNS332]
          Length = 554

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +  +I     +   + DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGYCDEISVIIHAD--NSISVQDNGRGIPTD 95


>gi|85057982|ref|YP_453684.1| DNA gyrase subunit B [Sodalis glossinidius str. 'morsitans']
 gi|84778502|dbj|BAE73279.1| DNA gyrase subunit B GyrB [Sodalis glossinidius str. 'morsitans']
          Length = 804

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 82/247 (33%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNAIDEALAGHCKEIVVKIHED--NSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L LM +        Q   +G   S +  V
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELMIKREG-KVHQQTYHAGVPQSPLEVV 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T   VR      P+ + F  + + +  ++   +R ++     VS      ++++ 
Sbjct: 158 GETDQTGTTVRF----WPSFVTFTNNTEFQYEILAKRLRELSFLNSGVSIRLRDKRNDKE 213

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
                                    N    + + + I ++       +N G     Y F 
Sbjct: 214 DHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTEKDGIGVEIAL---QWNDGFQENIYCFT 270

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 271 NNIPQRD 277


>gi|114330039|ref|YP_746261.1| DNA gyrase subunit B [Nitrosomonas eutropha C91]
 gi|114307053|gb|ABI58296.1| DNA gyrase subunit B [Nitrosomonas eutropha C91]
          Length = 809

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +  +I     +   + DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGYCDEISVIIHAD--NSISVQDNGRGIPTD 95


>gi|329847197|ref|ZP_08262225.1| sensor protein chvG [Asticcacaulis biprosthecum C19]
 gi|328842260|gb|EGF91829.1| sensor protein chvG [Asticcacaulis biprosthecum C19]
          Length = 516

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 11/56 (19%)

Query: 33  NSLDAESSR-------VETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTS 78
           N +D  +         V   +  G  +     +  D+G G+  + +    QR  TS
Sbjct: 409 NVID-NARSFSPEGGEVRVTLTNGDAALPVLIRFEDDGPGIPEDNLETIFQRFYTS 463


>gi|307310984|ref|ZP_07590629.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
 gi|307322005|ref|ZP_07601384.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306892343|gb|EFN23150.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306899664|gb|EFN30291.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
          Length = 595

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 17/68 (25%)

Query: 17  GEIIERPSIAIKELIENSLDAES------SRVETVIAGGGKSFFQ-ITDNGFGMTSEEIP 69
           G+II         LIEN   A S       R+   +          + DNG G+ +E+I 
Sbjct: 481 GQIITN-------LIEN---ARSFVPEQNGRIVVRLTRSRSRCIVYVEDNGPGIQAEDID 530

Query: 70  MAVQRHCT 77
              +R  T
Sbjct: 531 RIFERFYT 538


>gi|301163134|emb|CBW22683.1| putative two-component sensor histidine kinase protein [Bacteroides
           fragilis 638R]
          Length = 439

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 30  LIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ + +++ +     ++ G + + +I DNG G+  E +        T+K
Sbjct: 346 LIKNARENDATDIRISAGLSSGERPYIRIEDNGTGIEQEVLDRIFIPFFTTK 397


>gi|291535583|emb|CBL08695.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
 gi|291540825|emb|CBL13936.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 495

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 42  VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHC 76
           +   I   G  F Q+   DNG G+++ ++P    R  
Sbjct: 404 INIRIKDVG-DFIQVEIEDNGRGISARDLPYIFDRFY 439


>gi|225012591|ref|ZP_03703026.1| histidine kinase [Flavobacteria bacterium MS024-2A]
 gi|225003124|gb|EEG41099.1| histidine kinase [Flavobacteria bacterium MS024-2A]
          Length = 332

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ER    +  LI NSL    +   + +        K   +I DNG G++ E +P   +R  
Sbjct: 214 ERIQQVLMNLIINSLKYGTERGVTEISFEKMNDTKLLIRINDNGDGISEEHLPRLFERFY 273


>gi|222153065|ref|YP_002562242.1| sensor histidine kinase [Streptococcus uberis 0140J]
 gi|222113878|emb|CAR42040.1| sensor histidine kinase [Streptococcus uberis 0140J]
          Length = 314

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            +   +A G     +I+D+G G+  E+IP   +   T
Sbjct: 234 HISIKLANG----IEISDDGIGILPEDIPRLFEEGYT 266


>gi|221195249|ref|ZP_03568305.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626]
 gi|221185152|gb|EEE17543.1| DNA gyrase, B subunit [Atopobium rimae ATCC 49626]
          Length = 649

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   ++++  +     +   + DNG G+  +
Sbjct: 45 EIVDNSVDEALAGFCTKIKVTVHAD--NSVSVEDNGRGIPVD 84


>gi|163794545|ref|ZP_02188516.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180269|gb|EDP64792.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 509

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+ N++   D   + RV   + G G     + D G G+  E++P  ++R 
Sbjct: 381 LLSNAVKFTDPGGTVRVSVSVQGDGLLDITVADTGIGIRPEDVPRILKRF 430


>gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 466

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 19/81 (23%)

Query: 5   KLSEKIINQIAAGEIIE----RPSIAIKELIENSL----DAESSRVETVIAGGG-KSFFQ 55
           +L E++I        IE    R    I  L++N++    +A    V   +      +   
Sbjct: 341 QLDEEVI--------IEGDADRLEQVISNLLDNAIRYTPEAG--EVMMELKQNDHLAVLT 390

Query: 56  ITDNGFGMTSEEIPMAVQRHC 76
           + D G G+  E++   + R  
Sbjct: 391 VKDTGCGIPEEDLENIMDRFY 411


>gi|119896749|ref|YP_931962.1| putative two component sensor kinase [Azoarcus sp. BH72]
 gi|119669162|emb|CAL93075.1| putative two component sensor kinase [Azoarcus sp. BH72]
          Length = 462

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 23  PSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               ++ LIEN+L   +  ++  I     GG     + D+G  + + ++P   +R 
Sbjct: 352 LFQVLQNLIENALKHGAGDIDIGIDTLPDGGARL-TVRDHGEAVAAADLPHLFERF 406


>gi|148251634|ref|YP_001236219.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1]
 gi|146403807|gb|ABQ32313.1| DNA gyrase subunit B [Bradyrhizobium sp. BTAi1]
          Length = 812

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +SRVE V+     +   + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGYASRVEVVLNAD--NSVTVRDDGRGIPVD 96


>gi|327540393|gb|EGF26979.1| sensor protein atoS [Rhodopirellula baltica WH47]
          Length = 623

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 17  GEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
            E I R   A+  L+ N++DA +  V               + D+G G+  E+      
Sbjct: 506 SEAIHR---AVLNLVTNAIDAATKTVLVKTFYDAAQGWIVDVEDDGEGVPEEDREQIFS 561


>gi|294495183|ref|YP_003541676.1| DNA topoisomerase VI subunit beta [Methanohalophilus mahii DSM
          5219]
 gi|292666182|gb|ADE36031.1| DNA topoisomerase VI, B subunit [Methanohalophilus mahii DSM
          5219]
          Length = 617

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 27 IKELIENSLDAESSR-----VETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR 74
          IKE ++NSLDA         +   I   GKS   +   DNG G+  ++IP    +
Sbjct: 42 IKEAVDNSLDACEESGILPDIMLHIKRSGKSGVVVIIEDNGPGIVKDQIPRVFAK 96


>gi|291535201|emb|CBL08313.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Roseburia intestinalis M50/1]
 gi|291539733|emb|CBL12844.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Roseburia intestinalis XB6B4]
          Length = 190

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A +   +   +   G     + DNG G+ 
Sbjct: 43 EIVDNAVDEHLAGACDTIRVTLEADG--SCTVEDNGRGVP 80


>gi|291521103|emb|CBK79396.1| DNA gyrase subunit B [Coprococcus catus GD/7]
          Length = 636

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +E  I     +   + DNG G+ 
Sbjct: 39 VYEIVDNSVDEALAGYCDHIEVTINKD--NSITVVDNGRGIP 78


>gi|222872366|gb|EEF09497.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 21  ERPSIAIKELIENSLDAES-----SRVETVIAGGGKSFFQITDNGFGMT----SEE---- 67
           + P   ++E+I+N+ D E+     + +   +   G     + D+G G+      EE    
Sbjct: 250 DNPLHVVQEVIDNASD-EALGGYGTEILVTLHRDG--SISVEDDGRGIPVGIHPEEQVPV 306

Query: 68  IPMAVQR-HC 76
           + +   R H 
Sbjct: 307 VEIVFTRLHA 316


>gi|222086041|ref|YP_002544573.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84]
 gi|221723489|gb|ACM26645.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84]
          Length = 689

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  +  +E  +   G  +  +TDNG G+  E  P
Sbjct: 86  EVIDNSMDEAVAGHADFIEVHLDQRG--YLTVTDNGRGIPVENHP 128


>gi|186684154|ref|YP_001867350.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186466606|gb|ACC82407.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 448

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 26  AIKELIENSLDAES-------SRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A++E++ N +D  +        ++               I+DNG G+  E++    +RH 
Sbjct: 330 ALREVLTNIID-NALKYTPTGGKILIQAGQEKANFQGIAISDNGPGIPPEDLEHLGERHY 388


>gi|163851536|ref|YP_001639579.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163663141|gb|ABY30508.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 757

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 23  PSIAIKELIENSLD---AESSR---VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
            +  +  L+ N++    A + R   +   ++  G     +++D+G G+  E +       
Sbjct: 631 LAQVVTNLVANAVVHGFAGAERPGTITVRVSAPGALVRLEVSDDGGGIAPEHLGRIFDPF 690

Query: 76  CT 77
            T
Sbjct: 691 FT 692


>gi|81251102|gb|ABB69898.1| DNA gyrase subunit B [Nitrosomonas sp. IWT310]
          Length = 554

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +  +I     +   + DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGYCDEISVIIHAD--NSISVQDNGRGIPTD 95


>gi|94311457|ref|YP_584667.1| DNA topoisomerase IV subunit B [Cupriavidus metallidurans CH34]
 gi|93355309|gb|ABF09398.1| DNA topoisomerase IV, subunit B [Cupriavidus metallidurans CH34]
          Length = 690

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 17/70 (24%)

Query: 21  ERPSIAIKELIENSLDAES-----SRVETVIAGGGKSFFQITDNGFGMT----SEE---- 67
           + P   ++E+I+N+ D E+     + +   +   G     + D+G G+      EE    
Sbjct: 59  DNPLHVVQEVIDNASD-EALGGYGTEILVTLHRDG--SISVEDDGRGIPVGIHPEEQVPV 115

Query: 68  IPMAVQR-HC 76
           + +   R H 
Sbjct: 116 VEIVFTRLHA 125


>gi|32265520|ref|NP_859552.1| two-component sensor histidine kinase family protein [Helicobacter
           hepaticus ATCC 51449]
 gi|32261568|gb|AAP76618.1| two-component sensor histidine kinase family protein [Helicobacter
           hepaticus ATCC 51449]
          Length = 491

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 30  LIENSLDA---ESSR--------VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           LI N++DA   +S          +E  +   G +    + DN  G+  E+     + + T
Sbjct: 374 LINNAIDALKLKSQNDKSFENPLIEISLDKLGYNIILCVKDNAGGIDLEDKSKVFEPYFT 433

Query: 78  SK 79
           +K
Sbjct: 434 TK 435


>gi|32475281|ref|NP_868275.1| sensor protein atoS [Rhodopirellula baltica SH 1]
 gi|32445822|emb|CAD78553.1| sensor protein atoS [Rhodopirellula baltica SH 1]
          Length = 623

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 17  GEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
            E I R   A+  L+ N++DA +  V               + D+G G+  E+      
Sbjct: 506 SEAIHR---AVLNLVTNAIDAATKTVLVKTFYDAAQGWIVDVEDDGEGVPEEDREQIFS 561


>gi|325521887|gb|EGD00600.1| signal transduction histidine kinase [Burkholderia sp. TJI49]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++    A +  ++ V+   G +   ++ D G G+   E+    +R  
Sbjct: 344 LVDNAIRYAGAGA-CIDVVVGEDGNRPVLEVRDTGPGIPDNELTRVWERFY 393


>gi|322805370|emb|CBZ02934.1| two component system histidine kinase [Clostridium botulinum H04402
           065]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K   ++ DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGEDKILIKVGDNGEGIPKEDLPHIFERFYRS 419


>gi|307546910|ref|YP_003899389.1| periplasmic sensor signal transduction histidine kinase [Halomonas
           elongata DSM 2581]
 gi|307218934|emb|CBV44204.1| periplasmic sensor signal transduction histidine kinase [Halomonas
           elongata DSM 2581]
          Length = 499

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 30  LIENSLDAESSRVETVI--AGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L A + +    +     G+     ++D+G G+ + ++P+  QR  
Sbjct: 394 LIDNALIAAAPQGRVWLAGEASGQGVRIAVSDDGDGIAAADLPLVTQRFY 443


>gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
          Length = 464

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 22  RPSIAIKELIENSLDAESSR---VET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+EN++  + ++   +    ++       ++ D G GM  EE+P   +R  
Sbjct: 356 RLEQVLINLVENAI--KYTKEGSITIYTVSNDENIKIKVRDTGIGMEEEELPYIFERFY 412


>gi|322421560|ref|YP_004200783.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127947|gb|ADW15507.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 379

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 42  VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           V   +   GG+    + DNG G+  +++P   ++  
Sbjct: 289 VCVTLRNLGGECEITVQDNGIGIPKDQLPKLFEKFY 324


>gi|261399940|ref|ZP_05986065.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970]
 gi|269210391|gb|EEZ76846.1| DNA topoisomerase IV, B subunit [Neisseria lactamica ATCC 23970]
          Length = 661

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATAIDVQIHEDG--SLSVHDNGRGIPVGLHPEEGVPVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|225181142|ref|ZP_03734588.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168111|gb|EEG76916.1| DNA gyrase, B subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 650

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I         ++D+G G+ 
Sbjct: 51 EVVDNSIDEALAGHCDDIVITIEKDNI--ITVSDDGRGIP 88


>gi|144901247|emb|CAM78111.1| two-component sensor histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 42  VETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQ 73
           +   +   G  +   ++DNG G+ +EE   A +
Sbjct: 375 ITVSVEQAGAGWIVDVSDNGVGIAAEERERAFE 407


>gi|144898158|emb|CAM75022.1| DNA topoisomerase II [Magnetospirillum gryphiswaldense MSR-1]
          Length = 704

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ VE V+   G     + DNG G+ ++
Sbjct: 49 VYEVVDNAIDEALAGYANLVEVVLNADG--SCTVRDNGRGIPTD 90


>gi|146309576|ref|YP_001190041.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
 gi|145577777|gb|ABP87309.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
          Length = 591

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 9   KIINQIAAG-EII---ERPSIAIKELIENSLDAESSRVETVIAGGGKS------FFQITD 58
           ++  Q+ AG E++    R    I  L+ N+LDA  +  E  I   G S         + D
Sbjct: 469 ELRTQVDAGAEVLGDAIRIEQVILNLLHNALDAM-TESEVRILQVGISREGDTCLLSVED 527

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
           +G G+  E +    +   T+K
Sbjct: 528 SGGGIAEETLGRVFEPFFTTK 548


>gi|76666811|emb|CAJ31189.1| Two-component regulator sensor and histidine kinase [uncultured
           sulfate-reducing bacterium]
          Length = 515

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 30  LIENSLDA------ESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ENSLDA      +S   +  ++  G      F+++DNG GM  E          +SK
Sbjct: 410 LLENSLDACRVDSKKSDH-QVTLSARGDEDEVHFEVSDNGIGMERETREKVFTLFFSSK 467


>gi|60681576|ref|YP_211720.1| putative two-component sensor histidine kinase protein [Bacteroides
           fragilis NCTC 9343]
 gi|60493010|emb|CAH07790.1| putative two-component sensor histidine kinase protein [Bacteroides
           fragilis NCTC 9343]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 30  LIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ + +++ +     ++ G + + +I DNG G+  E +        T+K
Sbjct: 346 LIKNARENDATDIRISAGLSSGERPYIRIEDNGTGIEHEVLDRIFIPFFTTK 397


>gi|23010448|ref|ZP_00051133.1| COG4191: Signal transduction histidine kinase regulating
           C4-dicarboxylate transport system [Magnetospirillum
           magnetotacticum MS-1]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 15  AAGEIIE---RPSIAIKELIENSLDA-----ESSRVETVIAGG-GKSFFQITDNGFGMTS 65
           AA  ++    R S  +  L+ N+LDA      + +V      G G+    + DNG G+  
Sbjct: 294 AAQWVVFEPIRLSQVLVNLVGNALDAVKGRPGA-QVVIRAWAGEGQVVLSVEDNGPGLEG 352

Query: 66  EEIPMAVQRHCTSK 79
             +        T+K
Sbjct: 353 AALARIFDPFFTTK 366


>gi|327478828|gb|AEA82138.1| sensor histidine kinase [Pseudomonas stutzeri DSM 4166]
          Length = 587

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+  +    G      + DNG G+ SE +    +   
Sbjct: 477 RLEQVLINLLHNALDAMAERPQRRLRILCRRVGDAWQLSVADNGGGIASEHLDQVFEPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|331266047|ref|YP_004325677.1| hypothetical protein SOR_0674 [Streptococcus oralis Uo5]
 gi|326682719|emb|CBZ00336.1| hypothetical protein SOR_0674 [Streptococcus oralis Uo5]
          Length = 263

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          ELI+N+ DA+S +V+ V+    K    I D G GM  E I      H +S
Sbjct: 33 ELIKNAYDAKSPKVDIVLDSKTKQL-TIRDYGEGMDKEGIEKLF--HISS 79


>gi|299538438|ref|ZP_07051721.1| integral membrane sensor signal transduction histidine kinase
           [Lysinibacillus fusiformis ZC1]
 gi|298726025|gb|EFI66617.1| integral membrane sensor signal transduction histidine kinase
           [Lysinibacillus fusiformis ZC1]
          Length = 479

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 21  ERPSIAIKELIENSL------DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAV 72
           +R    I  LI N+L      D     +     I      + Q+ D G GM  E++P   
Sbjct: 368 DRLEQVISNLITNALKHSSHED----TITITTYIENQSL-YIQVIDTGNGMLPEDMPFIF 422

Query: 73  QRH 75
           +R+
Sbjct: 423 ERY 425


>gi|270263149|ref|ZP_06191419.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13]
 gi|270042837|gb|EFA15931.1| DNA topoisomerase IV subunit B [Serratia odorifera 4Rx13]
          Length = 658

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
            RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM  +
Sbjct: 58  TRPNHLGQEVIDNSVDEALAGHAKRIDVILHAD--QSLEVIDDGRGMPVD 105


>gi|255513419|gb|EET89685.1| DNA topoisomerase (ATP-hydrolyzing) [Candidatus Micrarchaeum
          acidiphilum ARMAN-2]
          Length = 635

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A     +   +    G  + ++TD+G G+  +
Sbjct: 42 EVIDNSVDEAMAGYCKNILVKLGRENGVDYAEVTDDGRGIPVD 84


>gi|227329493|ref|ZP_03833517.1| nitrate/nitrite sensor protein NarQ [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 573

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 15  AAGEIIERPSIAIKELIENSLD-AESSRVET--VIAGGGKSFFQITDNGFGM 63
           A+ ++       I+E + N++  A+++ +         G+    I D+G G+
Sbjct: 464 ASQQV--HLLQIIREAVLNAIKHAQATTITVNCRTQPDGRYCVDIRDDGCGI 513


>gi|126730950|ref|ZP_01746759.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37]
 gi|126708666|gb|EBA07723.1| DNA topoisomerase IV subunit B [Sagittula stellata E-37]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +        +I DNG G+  +
Sbjct: 48 VAEILDNSMDEAVAGHANRIEVTLRAD--HAIEIRDNGRGIPID 89


>gi|157372496|ref|YP_001480485.1| DNA topoisomerase IV subunit B [Serratia proteamaculans 568]
 gi|157324260|gb|ABV43357.1| DNA topoisomerase IV, B subunit [Serratia proteamaculans 568]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM  +
Sbjct: 31 TRPNHLGQEVIDNSVDEALAGHAKRIDVILHAD--QSLEVIDDGRGMPVD 78


>gi|27382035|ref|NP_773564.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27355205|dbj|BAC52189.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDAESS----RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
               I  L+EN++DA       R+    A  G    F+I+DNG G+  + I    +   T
Sbjct: 351 LHQVIVNLVENAIDAMRDTELPRLVVSAARKGNEILFRISDNGPGIDKDHISHIFEPFFT 410

Query: 78  SK 79
           +K
Sbjct: 411 TK 412


>gi|325914836|ref|ZP_08177171.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325538927|gb|EGD10588.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 20/88 (22%)

Query: 23  PSIAIKELIENSLDA----ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEE 67
               +  L+ N+ DA     +  +              +  G      + DNG G+    
Sbjct: 397 LENVVLNLVINARDALRGQGA--IRVQTAAYAALNDPELDDGEYVAVNVIDNGSGIEPAI 454

Query: 68  IPMAVQRHCTSK-ISD--DFSNIHTFGF 92
           +    +   T+K I +        T+GF
Sbjct: 455 LDQVFEPFFTTKPIGEGTGLGLSMTYGF 482


>gi|325298159|ref|YP_004258076.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides salanitronis DSM 18170]
 gi|324317712|gb|ADY35603.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides salanitronis DSM 18170]
          Length = 519

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 15/57 (26%)

Query: 30  LIENSL-----DAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L     D     V   +       GGK    I DNG G+  E +     +  
Sbjct: 415 LLDNALKYKKPD-----VNIKLKVRTWNEGGKLHISIEDNGIGIKKENLKKIFDKFY 466


>gi|304404947|ref|ZP_07386607.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345826|gb|EFM11660.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 457

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 25  IAIKELIENSLDA-----ESS--RVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRH 75
             I  +++NSLDA      S   R++ ++     G     + DNG GM    +       
Sbjct: 353 QVILNIMKNSLDAIEEINGSRNGRIDVIVQRSPEGVE-ITLRDNGKGMDRSTLSRLFDPF 411

Query: 76  CTSK 79
            T+K
Sbjct: 412 FTTK 415


>gi|291457885|ref|ZP_06597275.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291419429|gb|EFE93148.1| DNA gyrase, B subunit [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 656

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + D+G G+  +
Sbjct: 58 VYEIVDNSVDEALAGYCGEISVTIEPD--NSITVEDDGRGIPVD 99


>gi|300780154|ref|ZP_07090010.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
          genitalium ATCC 33030]
 gi|300534264|gb|EFK55323.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Corynebacterium
          genitalium ATCC 33030]
          Length = 686

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  + +VE  + A GG    Q+ DNG G+  E
Sbjct: 44 EVVDNSVDEAMAGYADKVEVTLLADGG---VQVVDNGRGIPVE 83


>gi|290579565|ref|YP_003483957.1| hypothetical protein SmuNN2025_0039 [Streptococcus mutans NN2025]
 gi|254996464|dbj|BAH87065.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 799

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 18/83 (21%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVI----------AGGGKSFFQITDNGFGMTSEE 67
           E +     AI EL++NS DA S++V   I               +  +I D G GM+ ++
Sbjct: 23  ENVLDYRSAILELVKNSYDAFSNQVNIRIIGKDITINKKKDKRATSIEIIDYGQGMSLDK 82

Query: 68  IPMAV-------QRHCTS-KISD 82
           I           + + TS K  +
Sbjct: 83  IINVFFTLGTDDKTYTTSIKYQE 105


>gi|315497511|ref|YP_004086315.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315415523|gb|ADU12164.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 526

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTS 78
             I D+G G+ +E +    QR  TS
Sbjct: 447 IVIEDDGPGIPAENLETIFQRFYTS 471


>gi|224119746|ref|XP_002318152.1| predicted protein [Populus trichocarpa]
 gi|222858825|gb|EEE96372.1| predicted protein [Populus trichocarpa]
          Length = 862

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 29  ELIENSLDA---ESSRVETVIAGGGKSFFQ---ITDNGFGMTSEEIPMAVQRHCT--SKI 80
           EL++N+LD     +  V   +    K   +   I DNG GM  +++   +    +  SK+
Sbjct: 178 ELLDNALDEFGNGARFVNIDMVESKKDQSRMLLIEDNGGGMDPDKLRQCMSLGYSAKSKV 237

Query: 81  SDDFSNIHTFG 91
           ++    I  +G
Sbjct: 238 AN---TIGQYG 245


>gi|163733481|ref|ZP_02140924.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149]
 gi|161393269|gb|EDQ17595.1| DNA topoisomerase IV, B subunit [Roseobacter litoralis Och 149]
          Length = 652

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +         I DNG G+  +
Sbjct: 48 VAEVLDNSMDEAVAGHATRIEVELHED--YAVTIRDNGRGIPVD 89


>gi|160933977|ref|ZP_02081364.1| hypothetical protein CLOLEP_02839 [Clostridium leptum DSM 753]
 gi|156866650|gb|EDO60022.1| hypothetical protein CLOLEP_02839 [Clostridium leptum DSM 753]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 20  IERPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQR 74
           I      +  L+ N++DA        +  ++   G+    ++ D G G+  +      ++
Sbjct: 505 INSMVQVVNNLVTNAVDAEKGMGGGVISILLEKTGEEFLIKVKDTGAGVPEDVKKKLFKQ 564

Query: 75  HCTSK 79
             TSK
Sbjct: 565 MITSK 569


>gi|39997242|ref|NP_953193.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984132|gb|AAR35520.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 15/65 (23%)

Query: 21  ERPSIAIKELIENSLDA---------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           ER S  +  LI NSL A          + R        G S   + D G G+ +EE+P+ 
Sbjct: 316 ERLSQILINLISNSLKATAPGGAITLGARR-----TPDGCSL-TVADTGCGIAAEELPLI 369

Query: 72  VQRHC 76
            +R  
Sbjct: 370 FERFY 374


>gi|24378572|ref|NP_720527.1| DNA mismatch repair protein [Streptococcus mutans UA159]
 gi|24376423|gb|AAN57833.1|AE014856_12 conserved hypothetical protein; possible DNA mismatch repair
           protein [Streptococcus mutans UA159]
          Length = 203

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 18/83 (21%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVI----------AGGGKSFFQITDNGFGMTSEE 67
           E +     AI EL++NS DA S++V   I               +  +I D G GM+ ++
Sbjct: 23  ENVLDYRSAILELVKNSYDAFSNQVNIRIIGKDITINKKKDKRATSIEIIDYGQGMSLDK 82

Query: 68  IPMAV-------QRHCTS-KISD 82
           I           + + TS K  +
Sbjct: 83  IINVFFTLGTDDKTYTTSIKYQE 105


>gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 608

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 26  AIKELIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            ++ L++N++   D ++ ++             +I DNG G+   ++    +R  
Sbjct: 484 VVRNLLDNAIKYVDDQNGKIRITAFKSDDHLRLEIEDNGIGIAKSDLGRIFERFY 538


>gi|303247779|ref|ZP_07334048.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302490863|gb|EFL50762.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 447

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 5   KLSEKIIN-QIAAGEIIERPSIAIKELIENSLD---AESSRVETVIAGGGKSFFQITDNG 60
           ++   + N  IAA    +  +IA++ L EN+L    A  + V   +   G+   Q+ D G
Sbjct: 323 RIDPALRNFTIAANR--DSLAIALRNLHENALQHSPAGGTVVW-NVTPDGRG-IQVEDEG 378

Query: 61  FGMTSEEIPMAVQRH 75
            GM  EEI  A QR 
Sbjct: 379 PGMPPEEILQATQRF 393


>gi|254421559|ref|ZP_05035277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189048|gb|EDX84012.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 466

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 22  RPSIAIKELIENSLD-AESSR-VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI+N+L  + +S  +   +   G +++ ++ D G G+   ++        
Sbjct: 360 RLKQVLLNLIDNALKYSIASEPITVTLKKMGNQAYIEVKDTGRGIPPSDLNKIFDPFY 417


>gi|253702668|ref|YP_003023857.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
 gi|251777518|gb|ACT20099.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
          Length = 441

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 18/80 (22%)

Query: 18  EIIERP-----------SIAIKELIENSLDAESSR------VETVIA-GGGKSFFQITDN 59
           E++ER            +  +  ++ N+ DA + R      VE  IA   G+S   ++DN
Sbjct: 322 EVVERINPVITGYPNQYAQVLLNILNNARDAFAERNVPSPKVEIRIAAEEGRSVVTVSDN 381

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
             G+  E I      + T+K
Sbjct: 382 AGGIPPEVIDKVFDPYFTTK 401


>gi|146300327|ref|YP_001194918.1| HSP90 family molecular chaperone-like protein [Flavobacterium
           johnsoniae UW101]
 gi|146154745|gb|ABQ05599.1| Molecular chaperone HSP90 family-like protein [Flavobacterium
           johnsoniae UW101]
          Length = 881

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 93/322 (28%), Gaps = 55/322 (17%)

Query: 27  IKELIENSLDA-------ESS---RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++ELI+NS+D          +    ++  I    K+  +I DNG GM    I     + C
Sbjct: 327 LRELIQNSIDTCRYKKVLNPTYTPEIKLFIE---KNKIKIEDNGLGMDEFIIKNYFGKLC 383

Query: 77  TS-----KISDDFSNIHTFGFRGEALPSIGAVSHLT---------LMSRPPQNNTGAQIA 122
           +S      +  D+  I  FG           V   +         + ++  ++ T     
Sbjct: 384 SSFYQQESVKKDYDAIGQFG-----------VGVFSYFLMADFIDIETKTERSETLRFRL 432

Query: 123 ISGEKISSVRPVAMN---PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAY 179
               K         +    GT + +      +        S +   + I D  R     Y
Sbjct: 433 DKDPKNYFHFFNKFDRKASGTSIIL-----NLKKEYENYSS-KDYFDYIKDKFR-----Y 481

Query: 180 PKVSFTFSTIKSNRYKMNFQSTNGNFPERISQ---VIGEDFINNAVELNEKSNEITLQGY 236
            +                   T     E+I++      + F +     +   +  + +G 
Sbjct: 482 IEFPIIIDCEGEIVEIKKQDYTEKRVKEKITESLKYQYKSFSDKIEVFDYDFSNQSYEGA 541

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVD 296
                FN  + N+ Y  +N   +      + I  +    +    Y  +          + 
Sbjct: 542 ISFFYFNDYSFNKIYYLMNDDFINKTTRGNEINLSQKGVLVSKVYDHINFNDIFCNINLK 601

Query: 297 VNVHPAKSYIRFRNPTIIRNFI 318
             +    S   F N   I   +
Sbjct: 602 EKLALQISRNNFSNDIEIYGLL 623


>gi|15893609|ref|NP_346958.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023161|gb|AAK78298.1|AE007546_4 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507731|gb|ADZ19367.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 498

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 20  IERPSIAIKELIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           ++  +  I  +I NS+   D E  ++   +    +     I DNG G++ E +P    R 
Sbjct: 384 VQNINRVISNIISNSIKYMDKEHGKISVEVDSNNEEVLVGIKDNGMGISEEALPYVFDRF 443

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIG 101
                 +DFS   + G  G  L  I 
Sbjct: 444 Y----REDFSRNTSKGGSGLGLA-IC 464


>gi|95929449|ref|ZP_01312192.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95134565|gb|EAT16221.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 33  NSLDAESS--RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+L A +    +   +   G + + +++DNG G+  E +        T+K
Sbjct: 297 NALQAMADGGLLSVEMEQQGDRIYVEVSDNGSGIAQENLSKVFDPFFTTK 346


>gi|296282791|ref|ZP_06860789.1| integral membrane sensor signal transduction histidine kinase
           [Citromicrobium bathyomarinum JL354]
          Length = 381

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 23  PSIAIKELIENSLDAESSR------VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
              A+  L+ N+  AE++       V   I          +TDNG G+  E   +  +  
Sbjct: 277 LHQAVWALLNNA--AEATSTTSEPCVSLSIEREENRLAITVTDNGVGVDPESAALIFRPF 334

Query: 76  CTSK 79
            T+K
Sbjct: 335 HTTK 338


>gi|295979567|dbj|BAJ07456.1| DNA gyrase subunit B [Prosthecomicrobium pneumaticum]
          Length = 306

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     + DNG G+ ++
Sbjct: 12 VYEVVDNAIDEALAGHADEVSVTLNPDG--SCTVKDNGRGIPTD 53


>gi|291518265|emb|CBK73486.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain
           [Butyrivibrio fibrisolvens 16/4]
          Length = 384

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 40  SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC---TS 78
           SR+  ++   G     +I+DNG G+ ++++P    R     TS
Sbjct: 288 SRIGIIVKDVGDFVQIEISDNGKGIATQDLPYVFDRFYRADTS 330


>gi|237753145|ref|ZP_04583625.1| sensor histidine kinase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375412|gb|EEO25503.1| sensor histidine kinase [Helicobacter winghamensis ATCC BAA-430]
          Length = 429

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 19/111 (17%)

Query: 22  RPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           R    +  L++N+L    +  S VE V+   G++F  I DNG G+  +++    +R+   
Sbjct: 332 RIVRVVDNLLDNALKYTQSGGS-VEVVL---GENFLNIKDNGCGIPKDKMDKIFKRYY-- 385

Query: 79  KISDDFSNIHTFGFRGEALPS---IGAVSHLTLMSRPPQNNTGAQIAISGE 126
                 +N +  GF G  L     I  + ++T+ +   +   G++  +   
Sbjct: 386 -----RANANQGGF-GIGLALVQQICTLYNITI-TCKSEEGKGSEFRLQWN 429


>gi|229100487|ref|ZP_04231344.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|228682942|gb|EEL36963.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
          Length = 534

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 19  IIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           II      +  LI N+ DA       +VE  I  G      + D G G+  + +     +
Sbjct: 423 IIHELITIVGNLINNAFDAVMNCEKKQVEVGIQHGDALMITVQDTGSGIPEDMLDKLFTK 482

Query: 75  HCTSK 79
             ++K
Sbjct: 483 GYSTK 487


>gi|229118526|ref|ZP_04247879.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228664907|gb|EEL20396.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
          Length = 534

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 19  IIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           II      +  LI N+ DA       +VE  I  G      + D G G+  + +     +
Sbjct: 423 IIHELITIVGNLINNAFDAVMNCEKKQVEVGIQHGDALMITVQDTGSGIPEDMLDKLFTK 482

Query: 75  HCTSK 79
             ++K
Sbjct: 483 GYSTK 487


>gi|194335983|ref|YP_002017777.1| histidine kinase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308460|gb|ACF43160.1| histidine kinase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 585

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 19/28 (67%)

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           +TD+G G+ ++++P   +   T+K++ D
Sbjct: 375 VTDDGCGIDTKDLPHIFEPFFTTKLATD 402


>gi|116250925|ref|YP_766763.1| two component sensor histidine kinase transcriptional regulator
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255573|emb|CAK06653.1| putative two component sensor histidine kinase transcriptional
           regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 465

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 30  LIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+EN++    D   + +   +   GG++   + D+G G+ + E     +R
Sbjct: 354 LVENAINHCPD--GTDITVSLRRQGGRAIVSVADSGPGIPAGERDKVFRR 401


>gi|88604152|ref|YP_504330.1| DNA topoisomerase VI subunit B [Methanospirillum hungatei JF-1]
 gi|88189614|gb|ABD42611.1| DNA topoisomerase VI, B subunit [Methanospirillum hungatei JF-1]
          Length = 606

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 29/186 (15%)

Query: 27  IKELIENSLDA--ESSRV-ETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +KE I+N+LDA  E+  + +  +      G      + DNG G+  E IP         K
Sbjct: 45  VKEAIDNALDACEEAGVLPDIYLGIFQMEGDIFKVVVEDNGPGIVPENIPYVFG-----K 99

Query: 80  I--SDDFSNIH-TFGFRGEALPSIGAV--SHLT------LMSRPPQNNTGAQIAISGEKI 128
           +     F  I  + G +G  +    AV  + LT      ++SR   +    +  +  +  
Sbjct: 100 LLYGSRFHQIRQSRGQQGIGIS--AAVLYAQLTSGRPTLVISRCGSDRPAFRFLVQIKTE 157

Query: 129 SSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
           ++   +     T     D            KS       + + +R  ++  P        
Sbjct: 158 TNEPEILKREETTW---DRVHGTRIE-IEFKSSLTARKRLIEYLRYTSVVNPHARIRVEI 213

Query: 189 IKSNRY 194
                 
Sbjct: 214 DGEAIL 219


>gi|87123248|ref|ZP_01079099.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
 gi|86168968|gb|EAQ70224.1| DNA gyrase, B subunit [Synechococcus sp. RS9917]
          Length = 705

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S +E V+   G +   +TDNG G+ ++
Sbjct: 45 VYEVVDNSVDEALAGHCSEIEVVLGDDGSAS--VTDNGRGIPTD 86


>gi|289207191|ref|YP_003459257.1| DNA gyrase subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288942822|gb|ADC70521.1| DNA gyrase, B subunit [Thioalkalivibrio sp. K90mix]
          Length = 810

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +E  I     +   ++DNG G+  +
Sbjct: 49 EVVDNSIDEALAGHCDTIEVTIHED--NAVSVSDNGRGIPVD 88


>gi|114768879|ref|ZP_01446505.1| C4-dicarboxylate transport sensor protein DctB, putative [alpha
           proteobacterium HTCC2255]
 gi|114549796|gb|EAU52677.1| C4-dicarboxylate transport sensor protein DctB, putative [alpha
           proteobacterium HTCC2255]
          Length = 579

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 22  RPSIAIKELIENSLDA--ESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N+LDA    +   ++  +  G  +   I DNG G+  E +    +   T
Sbjct: 474 RLEQVVINLLRNALDAMKGQTERYLQISLTAGEMATLTIQDNGPGI--ENLDEMFEPFFT 531

Query: 78  SK 79
           +K
Sbjct: 532 TK 533


>gi|222053121|ref|YP_002535483.1| DNA gyrase, B subunit [Geobacter sp. FRC-32]
 gi|221562410|gb|ACM18382.1| DNA gyrase, B subunit [Geobacter sp. FRC-32]
          Length = 794

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
             I+     + E+++NS+D   A     +   I   G     + DNG G+ ++
Sbjct: 34 STSIQGLHHLVYEVVDNSIDEALAGHCDDIAVTINVDG--SVTVVDNGRGIPTD 85


>gi|94263704|ref|ZP_01287512.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455903|gb|EAT06062.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 694

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIP---MAVQRHCT 77
           +   +  GG   F + DNG G+  ++        QR  T
Sbjct: 611 ISVTLEDGG-WRFTVADNGIGIDPQQFDRLFKVFQRLHT 648


>gi|4176381|dbj|BAA37153.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 629

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 71/209 (33%), Gaps = 25/209 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---------- 66
            RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM  +          
Sbjct: 29  TRPNHLAQEVIDNSVDEALAGHAKSVQVILHQD--NSLEVIDDGRGMPVDIHPEEGVPGV 86

Query: 67  EIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISG 125
           E+ + ++ H   K S+      + G  G  +  + A+S  + +  +   N      A   
Sbjct: 87  ELTL-IKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVEVRVKRDANEYRMTFADGF 144

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS-- 183
           +         +           +        +  S +   + +  V++  A+  P +S  
Sbjct: 145 KDSDLEVIGTVGKRNTGTSVHFW----PDPKYFDSAKFSVSRLKHVLKAKAVLCPGLSVV 200

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQV 212
           F                      + ++++
Sbjct: 201 FEDKNTGERVEWHFEDGLRSYLTDAVAEL 229


>gi|117924659|ref|YP_865276.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117608415|gb|ABK43870.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 378

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 31  IENSLDA-----ESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++NS+DA      +  ++    +    K    ITD G GM+ +++  A Q   T+K
Sbjct: 275 LQNSIDACIACDRAPAIKVHATVVNRSKVMLSITDQGTGMSEQDVRSAFQLFATTK 330


>gi|328675434|gb|AEB28109.1| Chaperone protein HtpG [Francisella cf. novicida 3523]
          Length = 628

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKNAKTII-V 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|253580826|ref|ZP_04858089.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847896|gb|EES75863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 664

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++N++D   A   S +  ++   G     +TDNG G+  +
Sbjct: 66  EIVDNAVDEHLAGYCSLIHVILEKDG--SCTVTDNGRGIPVD 105


>gi|296127875|ref|YP_003635125.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109]
 gi|296019690|gb|ADG72926.1| DNA gyrase, B subunit [Cellulomonas flavigena DSM 20109]
          Length = 698

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A     +E  + A GG    ++TDNG G+ 
Sbjct: 73  VYEVVDNSVDEALAGYCDTIEVTLLADGG---VRVTDNGRGIP 112


>gi|99078209|ref|YP_611467.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035347|gb|ABF62205.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Ruegeria sp. TM1040]
          Length = 824

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 17/64 (26%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           I AG+ I               D    R+   +  G +    ++D+G GM+ E     V 
Sbjct: 605 INAGQAISATGS----------DTG--RIVVSVTAGERVEVAVSDDGCGMSEE-----VL 647

Query: 74  RHCT 77
           RH T
Sbjct: 648 RHAT 651


>gi|332184961|ref|ZP_08386710.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332014685|gb|EGI56741.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 16  AGEIIERPSIAIKELIENSLDAESS------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           AG +  R    +  L++N+LDA +       R+             + DNG G+  E  P
Sbjct: 498 AGRV--RLEQVLVNLLQNALDAVADRPNPRVRMSVREEQDSVEL-TVEDNGPGLDPEIAP 554

Query: 70  MAVQRHCTSK 79
                  T K
Sbjct: 555 EIFTPFVTGK 564


>gi|330957589|gb|EGH57849.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 739

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    ++       G      + D+G G+  E++P   +R+
Sbjct: 633 ERLFQVLSNLIGNAI--KFTPKLGKIGVAAMSNGSEIVFTVRDSGEGIPPEQLPHIFERY 690

Query: 76  CTSK 79
            T K
Sbjct: 691 WTVK 694


>gi|329891030|ref|ZP_08269373.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568]
 gi|328846331|gb|EGF95895.1| DNA gyrase, B subunit [Brevundimonas diminuta ATCC 11568]
          Length = 809

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     +TDNG G+ 
Sbjct: 46 VYEVVDNAIDEALAGHADLVTVTLNEDG--SVTVTDNGRGIP 85


>gi|295979557|dbj|BAJ07451.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     +TDNG G+ 
Sbjct: 12 VYEVVDNAIDEALAGHADLVTVTLNEDG--SVTVTDNGRGIP 51


>gi|295979551|dbj|BAJ07448.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979555|dbj|BAJ07450.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979559|dbj|BAJ07452.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     +TDNG G+ 
Sbjct: 12 VYEVVDNAIDEALAGHADLVTVTLNEDG--SVTVTDNGRGIP 51


>gi|295979549|dbj|BAJ07447.1| DNA gyrase subunit B [Brevundimonas diminuta]
 gi|295979553|dbj|BAJ07449.1| DNA gyrase subunit B [Brevundimonas diminuta]
          Length = 313

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     +TDNG G+ 
Sbjct: 12 VYEVVDNAIDEALAGHADLVTVTLNEDG--SVTVTDNGRGIP 51


>gi|283953662|ref|ZP_06371193.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414]
 gi|283794703|gb|EFC33441.1| DNA gyrase, B subunit [Campylobacter jejuni subsp. jejuni 414]
          Length = 769

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     V+  I   G     ++DNG G+  +
Sbjct: 41 EVVDNSIDEAMAGHCDTVDVEITTEG--SCIVSDNGRGIPVD 80


>gi|260773750|ref|ZP_05882665.1| sensor kinase CitA [Vibrio metschnikovii CIP 69.14]
 gi|260610711|gb|EEX35915.1| sensor kinase CitA [Vibrio metschnikovii CIP 69.14]
          Length = 551

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA------ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
               +  LIEN+ D+      +S  V  +I   G+    +++DNG G++ +E  +   R 
Sbjct: 442 LCTVLGNLIENAFDSCRINQTKSPYVGILITDAGQDILIEVSDNGSGLSIQEKEVIWNRG 501

Query: 76  CTSK 79
            T K
Sbjct: 502 VTRK 505


>gi|254561304|ref|YP_003068399.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
 gi|254268582|emb|CAX24539.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 757

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 23  PSIAIKELIENSLD---AESSR---VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
            +  +  L+ N++    A + R   +   ++  G     +++D+G G+  E +       
Sbjct: 631 LAQVVTNLVANAVVHGFAGAERPGTITVRVSAPGALLRLEVSDDGGGIAPEHLGRIFDPF 690

Query: 76  CT 77
            T
Sbjct: 691 FT 692


>gi|261855397|ref|YP_003262680.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
 gi|261835866|gb|ACX95633.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
          Length = 481

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 14/78 (17%)

Query: 9   KIINQIAAGEIIERPSI------AIKELIENSLD---AESSRVETVIAGGGKSF-FQITD 58
            +  QI  G  I R +        +  L+EN+L+   A S +V   +    KS    I D
Sbjct: 356 HLSAQIQPG--ITRLASQGLLTQIVVNLLENALNHIPAGS-KVAVTLTQQEKSITLTIAD 412

Query: 59  NGFGMT-SEEIPMAVQRH 75
           NG G+    +    ++R 
Sbjct: 413 NGPGIPNPADRLRVLERF 430


>gi|189348281|ref|YP_001941477.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189338419|dbj|BAG47487.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 23  PSIAIKELIENSLD-----AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +  ++ L++N++      A   R+   +    G++  ++ D+G G+  +++    +R 
Sbjct: 347 LAAMVRNLVDNAIRYSPPLA---RIAVSVGQRDGRTVLRVEDSGPGIGDDDLHRLGERF 402


>gi|119953224|ref|YP_945433.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
 gi|119861995|gb|AAX17763.1| DNA gyrase subunit B [Borrelia turicatae 91E135]
          Length = 639

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   + DNG G+ ++
Sbjct: 42 VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTD 83


>gi|154687160|ref|YP_001422321.1| BceS [Bacillus amyloliquefaciens FZB42]
 gi|154353011|gb|ABS75090.1| BceS [Bacillus amyloliquefaciens FZB42]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 23  PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            S  I++L+ N++  +E+  +        G+    I D G G+  +++P   ++  TS
Sbjct: 221 LSFIIRQLLSNAVKYSEADDITVKSYEQNGRVHVDIEDRGIGIEPKDLPRIFEKGFTS 278


>gi|161522888|ref|YP_001585817.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160346441|gb|ABX19525.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 28/59 (47%), Gaps = 9/59 (15%)

Query: 23  PSIAIKELIENSLD-----AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +  ++ L++N++      A   R+   +    G++  ++ D+G G+  +++    +R 
Sbjct: 350 LAAMVRNLVDNAIRYSPPLA---RIAVSVGQRDGRTVLRVEDSGPGIGDDDLHRLGERF 405


>gi|83642921|ref|YP_431356.1| DNA gyrase subunit B [Hahella chejuensis KCTC 2396]
 gi|83630964|gb|ABC26931.1| DNA gyrase, B subunit [Hahella chejuensis KCTC 2396]
          Length = 805

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 79/249 (31%), Gaps = 30/249 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEEIPMAVQR------H 75
           E+++NS+D   A     V+  I         ++D+G G+     EE+ ++         H
Sbjct: 44  EVVDNSIDEALAGYCKEVKITIHAD--ESITVSDDGRGIPVDIHEEMGVSAAEVIMTMLH 101

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  D+   + + G  G  +  + A+S    LT+      N    Q+   G   + + 
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSKELRLTI---RRDNKVHEQVYKHGVPQAPLS 157

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            V     +  EV               + +   +++   +R +A     V  T    +S 
Sbjct: 158 VVGETDRSGTEVHFF-----PSAETFNNIEFHYDILAKRLRELAFLNSGVKITLHDERSA 212

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           + +       G     +  +       N V    K  E        +   N       + 
Sbjct: 213 KTE--TFEYEGGLRAFVEYLNQTKNPINKVFHFLKEREDGTAVEVSLQW-NDSFQENIFC 269

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 270 FTNNIPQRD 278


>gi|62865988|gb|AAY17144.1| DNA gyrase B [Borrelia turicatae]
 gi|62865990|gb|AAY17145.1| DNA gyrase B [Borrelia turicatae]
 gi|62865992|gb|AAY17146.1| DNA gyrase B [Borrelia turicatae]
 gi|62865994|gb|AAY17147.1| DNA gyrase B [Borrelia turicatae]
 gi|62865996|gb|AAY17148.1| DNA gyrase B [Borrelia turicatae]
 gi|62865998|gb|AAY17149.1| DNA gyrase B [Borrelia turicatae]
 gi|62866000|gb|AAY17150.1| DNA gyrase B [Borrelia turicatae]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTD 78


>gi|62866002|gb|AAY17151.1| DNA gyrase B [Borrelia turicatae]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTD 78


>gi|62865970|gb|AAY17138.1| DNA gyrase B [Borrelia parkeri]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTD 78


>gi|62865972|gb|AAY17139.1| DNA gyrase B [Borrelia parkeri]
 gi|62865974|gb|AAY17140.1| DNA gyrase B [Borrelia parkeri]
 gi|62865976|gb|AAY17141.1| DNA gyrase B [Borrelia parkeri]
 gi|62865978|gb|AAY17142.1| DNA gyrase B [Borrelia parkeri]
 gi|62865980|gb|AAY17143.1| DNA gyrase B [Borrelia parkeri]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    ++E VI     +   + DNG G+ ++
Sbjct: 37 VYEVVDNSIDEALAGFCDKIEVVINSD--NSVTVNDNGRGIPTD 78


>gi|55820413|ref|YP_138855.1| sensor histidine kinase [Streptococcus thermophilus LMG 18311]
 gi|55736398|gb|AAV60040.1| sensor histidine kinase (homolog to csrS/covS Spy) [Streptococcus
           thermophilus LMG 18311]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
            +++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 405 KKIQITIKALEDEMLVQVQDNGEGISKEDIEHIFERFYRS 444


>gi|23464659|ref|NP_695262.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum NCC2705]
 gi|23325219|gb|AAN23898.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum NCC2705]
          Length = 565

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 2   KIRK-LSE-KIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQIT 57
            I   L   +++ +I +  +I      ++ L+ N++D AE   +E  +A   K+    + 
Sbjct: 388 PIHTYLPNVQVLTRIDSRRVI----RIVRNLLANAVDFAEDRPIEVRVAANRKAVAISVR 443

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           D G G+  +++     R        D S     G  G  L SI 
Sbjct: 444 DYGVGIDEDKVAHVFDRFW----RGDLSRSRVTGGTGLGL-SIA 482


>gi|23336448|ref|ZP_00121665.1| COG0642: Signal transduction histidine kinase [Bifidobacterium
           longum DJO10A]
 gi|189438906|ref|YP_001953987.1| signal transduction histidine kinase [Bifidobacterium longum
           DJO10A]
 gi|32700052|gb|AAP86677.1| histidine protein kinase [Bifidobacterium longum subsp. infantis]
 gi|189427341|gb|ACD97489.1| Signal transduction histidine kinase [Bifidobacterium longum
           DJO10A]
          Length = 565

 Score = 42.0 bits (97), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 2   KIRK-LSE-KIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQIT 57
            I   L   +++ +I +  +I      ++ L+ N++D AE   +E  +A   K+    + 
Sbjct: 388 PIHTYLPNVQVLTRIDSRRVI----RIVRNLLANAVDFAEDRPIEVRVAANRKAVAISVR 443

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           D G G+  +++     R        D S     G  G  L SI 
Sbjct: 444 DYGVGIDEDKVAHVFDRFW----RGDLSRSRVTGGTGLGL-SIA 482


>gi|295394894|ref|ZP_06805107.1| sensor histidine kinase regulating citrate/malate metabolism
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972227|gb|EFG48089.1| sensor histidine kinase regulating citrate/malate metabolism
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 575

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 22  RPSIAIKELIENSLDA------ESSRVETVIAGGGKS----FFQITDNGFGMTSEEIPMA 71
                +  L++N+ DA       + R +  +   G +       + D+G G+  + +   
Sbjct: 440 DLVTVLGNLLDNAFDAVNRPDIPADRKKVELTMSGSTASGYTITVRDDGPGIPDDTVDNI 499

Query: 72  VQRHCTSK----ISDDFSNIHTFGFRGEAL 97
            +R  ++K      D    + T G RG  L
Sbjct: 500 FERGWSTKHDGVEHDTGQGVKTDGSRGVGL 529


>gi|302528404|ref|ZP_07280746.1| histidine kinase [Streptomyces sp. AA4]
 gi|302437299|gb|EFL09115.1| histidine kinase [Streptomyces sp. AA4]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC---TSKISDD 83
           L+ N+L   +  VE  ++     +F  +TD+G G+  E +P    R     TS+   D
Sbjct: 369 LVGNALHHGAPPVEVRLSTDDTTAFLTVTDHGPGIPEEVLPKVFDRFAKADTSRARSD 426


>gi|222150187|ref|YP_002551144.1| Chemotaxis protein histidine kinase [Agrobacterium vitis S4]
 gi|221737169|gb|ACM38132.1| Chemotaxis protein histidine kinase [Agrobacterium vitis S4]
          Length = 685

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLD-----------AE---SSRVETVIAG-GGKSFFQITDNGFG 62
            +IER +  +  L+ NS+D           A    + +V       GG+    I D+G G
Sbjct: 397 TVIERLADPLVHLVRNSIDHGLEPPEERLAAGKNKAGKVVLSAHQSGGEVIITIKDDGRG 456

Query: 63  MTSE 66
           +  +
Sbjct: 457 INRD 460


>gi|219872242|ref|YP_002476617.1| DNA topoisomerase IV subunit B [Haemophilus parasuis SH0165]
 gi|219692446|gb|ACL33669.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis SH0165]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 79/208 (37%), Gaps = 25/208 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   +  +++++ ++     +  ++ DNG GM  +         +
Sbjct: 31  TRPNHLGQEVIDNSVDEALSGFANQIDVILHSD--NSLEVVDNGRGMPVDIHSTEKISGV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTF--GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG 125
            + + + H   K S+     +TF  G  G  +  + A+S    ++             + 
Sbjct: 89  ELILTKLHAGGKFSN---KNYTFSGGLHGVGISVVNALSESVEITIKRNGEIYTIAFANS 145

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--VS 183
            K+  ++ +   P         F+  P    +  S +   + +  ++R  A+  PK  ++
Sbjct: 146 VKVEELKVIGSCPKRQTGTTVRFYPNP---KYFDSPKFSVSRLRHLLRAKAVLCPKLTIN 202

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           FT     +               + + +
Sbjct: 203 FTDHINNTQETWYYEDGLRDYLTDALKE 230


>gi|254517004|ref|ZP_05129062.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR5-3]
 gi|219674509|gb|EED30877.1| PAS/PAC sensor signal transduction histidine kinase [gamma
           proteobacterium NOR5-3]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 10/55 (18%)

Query: 30  LIENSLD-AE-SSRVETVIAGGGKSF-----FQITDNGFGMTSEEIPMAVQRHCT 77
           L++N++D A  + R++      G +        + DNG G+ ++ +P       T
Sbjct: 289 LVQNAVDVAGEAVRIDV---WAGATSHNSLQICVRDNGPGIPTDVLPRLFDPFFT 340


>gi|209550298|ref|YP_002282215.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209536054|gb|ACI55989.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 623

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 27/107 (25%)

Query: 7   SEKII---NQIAAGEIIERPSIAIKELIENSLDA---ESSRVETVIA---GGGKSFFQIT 57
              +    N+I       R    +  L++N+L+A   ++      +     G      + 
Sbjct: 509 PPDLQVMGNRI-------RLEQVLINLLQNALEAVAPKADEARVEVRTSSEGDMVTLTVA 561

Query: 58  DNGFGMTSEEIPMAVQRHCTSK---------ISDDFSNIHTFGFRGE 95
           DNG G++ E          TSK         IS D   +  +G R E
Sbjct: 562 DNGPGISPEIRKGLFTPFNTSKESGLGLGLVISKDI--VGDYGGRME 606


>gi|167854608|ref|ZP_02477389.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755]
 gi|167854363|gb|EDS25596.1| DNA topoisomerase 4 subunit B [Haemophilus parasuis 29755]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 80/208 (38%), Gaps = 25/208 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EI 68
            RP+   +E+I+NS+D   +  +++++ ++     +  ++ DNG GM  +         +
Sbjct: 31  TRPNHLGQEVIDNSVDEALSGFANQIDVILHSD--NSLEVVDNGRGMPVDIHSTEKISGV 88

Query: 69  PMAVQR-HCTSKISDDFSNIHTF--GFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISG 125
            + + + H   K S+     +TF  G  G  +  + A+S    ++             +G
Sbjct: 89  ELILTKLHAGGKFSN---KNYTFSGGLHGVGISVVNALSESVEITIKRNGEIYTIAFANG 145

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK--VS 183
            K+  ++ +   P         F+  P    +  S +   + +  ++R  A+  PK  ++
Sbjct: 146 VKVEELKVIGSCPKRQTGTTVRFYPNP---KYFDSPKFSVSRLRHLLRAKAVLCPKLTIN 202

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           FT     +               + + +
Sbjct: 203 FTDHINNTQETWYYEDGLRDYLTDTLKE 230


>gi|114776948|ref|ZP_01451991.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553034|gb|EAU55465.1| DNA gyrase, B subunit [Mariprofundus ferrooxydans PV-1]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A    ++E +I         + DNG G+ 
Sbjct: 13 EVVDNAIDEALAGHCDKIEVIIHSD--DSVTVRDNGRGIP 50


>gi|91791373|ref|YP_561024.1| DNA gyrase, B subunit [Shewanella denitrificans OS217]
 gi|91713375|gb|ABE53301.1| DNA gyrase subunit B [Shewanella denitrificans OS217]
          Length = 805

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 79/249 (31%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I   G     + D+G G+      EE   A +      H
Sbjct: 43  EVVDNSIDEALAGHCSDITITIHTDG--SVSVQDDGRGIPVAIHEEEGVSAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH---LTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  D+   + + G  G  +  + A+SH   LT+         G +I      +    
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSHKLQLTIR-------RGGKIYEQFYTMGVPD 152

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
                 G  ++        P+   F  + +   +++   +R ++     V       + N
Sbjct: 153 APIAAIGDAIKTGTEIRFWPSGETFT-NLEFHFDILAKRVRELSFLNSGVGIRLIDERDN 211

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           + +  F    G     ++ +       N    +                +N G     Y 
Sbjct: 212 KNE--FFKYEGGISAFVTYLNRNKTPVNKDVFHFAHEREDGITVEVAMQWNDGYQENIYC 269

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 270 FTNNIPQRD 278


>gi|42525747|ref|NP_970845.1| ATPase family protein [Treponema denticola ATCC 35405]
 gi|41815758|gb|AAS10726.1| ATPase family protein [Treponema denticola ATCC 35405]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)

Query: 29 ELIENSLDAESSR--VETVIAGGGKS---FFQITDNGFG 62
          E I NS+DA +SR  +   +    +       I DNG G
Sbjct: 24 EAIANSIDANASRVIINIELEKFSEEKNLLISIEDNGEG 62


>gi|50083301|ref|YP_044811.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ADP1]
 gi|49529277|emb|CAG66989.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ADP1]
          Length = 822

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 40/139 (28%), Gaps = 29/139 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I         ++DNG G+      EE   A +      H
Sbjct: 56  EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTDIHPEEGVSAAEVILTILH 113

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L     +     +         
Sbjct: 114 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----KLQLT--IHRAGQIHEQEYQHGDPQ 165

Query: 130 SVRPVAMNPGTIVEVRDLF 148
               V     T       +
Sbjct: 166 YPLKVVGETSTTGTTVRFW 184


>gi|28897204|ref|NP_796809.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153840089|ref|ZP_01992756.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363417|ref|ZP_05776267.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030]
 gi|260879174|ref|ZP_05891529.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898011|ref|ZP_05906507.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901428|ref|ZP_05909823.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805413|dbj|BAC58693.1| topoisomerase IV, subunit B [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746309|gb|EDM57374.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086337|gb|EFO36032.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094171|gb|EFO43866.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106489|gb|EFO44029.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus AQ4037]
 gi|308112928|gb|EFO50468.1| DNA topoisomerase IV, B subunit [Vibrio parahaemolyticus K5030]
 gi|328471973|gb|EGF42850.1| DNA topoisomerase IV subunit B [Vibrio parahaemolyticus 10329]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TF+       K           + +++
Sbjct: 200 ITFT--DKVNNKDYQWYYEDGLKDYLAE 225


>gi|87308271|ref|ZP_01090412.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645]
 gi|87288828|gb|EAQ80721.1| DNA gyrase subunit B [Blastopirellula marina DSM 3645]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   AE +S +   I     +   + D+G G+  E
Sbjct: 66  VYEVVDNSIDEAMAEFASAITVTIHND--NSVTVEDDGRGIPVE 107


>gi|299780361|gb|ADJ39723.1| DNA topoisomerase II large subunit [Enterobacteria phage T4T]
          Length = 516

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 27 IK---ELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMT 64
          +K   E+I+NS+D         ++++   I         + DNG G+ 
Sbjct: 49 VKLIDEIIDNSVDEGIRTKFKFANKINVTIKNN---QVTVEDNGRGIP 93


>gi|296389054|ref|ZP_06878529.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 472

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R++  I    G +  +++++G G+  E +P   +R  
Sbjct: 383 RIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFY 419


>gi|297570437|ref|YP_003691781.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926352|gb|ADH87162.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 400

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 22  RPSI-AIKELIENSLDAES--SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
            P    +  L+ N++DA S    +   +          + DNG G+   +         T
Sbjct: 274 NPVSQVLLNLLLNAIDAVSPGGEISLAVERRALEVQVTVADNGPGIAEADKEKIFTAFYT 333

Query: 78  SK 79
           +K
Sbjct: 334 AK 335


>gi|238752894|ref|ZP_04614358.1| Sensor kinase dpiB [Yersinia rohdei ATCC 43380]
 gi|238708879|gb|EEQ01133.1| Sensor kinase dpiB [Yersinia rohdei ATCC 43380]
          Length = 531

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 23  PSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
            +  I  L++N+        D+   ++E  ++  G +   ++ D+G G+  +      +R
Sbjct: 419 LAAIIGNLLDNAFEASLKNPDSN-KQIEIYLSDEGDNVILEVADHGCGIDPQYQDNMFER 477

Query: 75  HCTSKISDD----FSNIHTF 90
             +SK SD+       + T+
Sbjct: 478 GVSSKNSDEHGIGLYLVATY 497


>gi|228860935|ref|YP_002853958.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438609|gb|ACP30921.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 27 IK---ELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMT 64
          +K   E+I+NS+D         ++++   I         + DNG G+ 
Sbjct: 49 VKLIDEIIDNSVDEGIRTKFKFANKINVTIKNN---QVTVEDNGRGIP 93


>gi|262198967|ref|YP_003270176.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262082314|gb|ACY18283.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 990

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 14/70 (20%)

Query: 17  GEIIERPSIAIKELIENSL------DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           G++          L+ N++      D E +R+E      G+    +I+DNG GM+ E   
Sbjct: 744 GQVFTNL------LV-NAIHALPDRDREENRIEIRGVRSGRGVVIEISDNGVGMSPETQA 796

Query: 70  MAVQRHCTSK 79
                  T+K
Sbjct: 797 RIFDPFYTTK 806


>gi|153807001|ref|ZP_01959669.1| hypothetical protein BACCAC_01278 [Bacteroides caccae ATCC 43185]
 gi|149130121|gb|EDM21331.1| hypothetical protein BACCAC_01278 [Bacteroides caccae ATCC 43185]
          Length = 625

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 32/151 (21%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   ++E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMQAG-KKIEITVEEN--LRVSVRDYGRGIPQGKLIEAVSMLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPS-------------IGAVSH---LTLMSRPPQNNTG 118
                   + G  G       AL S             I   S    LT  ++  + + G
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALSSRFEVRSYRDGKVRIATFSKGTLLTDETQTTEEDNG 171

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFF 149
             I    +    +            +R+  +
Sbjct: 172 TYIFFEPDNTLFLNYCFKPEFIETMLRNYTY 202


>gi|107101970|ref|ZP_01365888.1| hypothetical protein PaerPA_01003017 [Pseudomonas aeruginosa PACS2]
 gi|218891498|ref|YP_002440365.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218771724|emb|CAW27498.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 472

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R++  I    G +  +++++G G+  E +P   +R  
Sbjct: 383 RIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFY 419


>gi|260904544|ref|ZP_05912866.1| putative signal transduction histidine kinase [Brevibacterium
           linens BL2]
          Length = 668

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 22  RPSIAIKELIENSLDA--------ESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPM 70
             +  +  LI+N+ DA        E  RV   ++G G +     +++D+G G+  E +  
Sbjct: 497 DLATILGNLIDNAFDALRRQDVLPEDKRVHVHLSGAGGASGFTIEVSDDGPGIDEEYVDA 556

Query: 71  AVQRHCTSK-----ISDDFSNIHTFGFRGEALP 98
             +R  ++K     I        + G RG  L 
Sbjct: 557 IFERGWSTKHDGVEIDKGLGRQES-GTRGVGLS 588


>gi|30248360|ref|NP_840430.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30138246|emb|CAD84254.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 461

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 30  LIENSL---DAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L    A S+     +  G    +    + DNG G+  EE     +R  
Sbjct: 360 LIDNALRYCPAGST---ITVRSGVHSSRPCLAVEDNGPGIPPEEHKKVFERFY 409


>gi|87119648|ref|ZP_01075545.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121]
 gi|86165124|gb|EAQ66392.1| DNA topoisomerase IV subunit B [Marinomonas sp. MED121]
          Length = 632

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A+ + +VE  +   G     + DNG GM  +
Sbjct: 32 RPNHLAQEVIDNSVDEALAKHADKVEVTLHKDG--SLSVEDNGRGMPVD 78


>gi|15597720|ref|NP_251214.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|254235521|ref|ZP_04928844.1| hypothetical protein PACG_01440 [Pseudomonas aeruginosa C3719]
 gi|254240955|ref|ZP_04934277.1| hypothetical protein PA2G_01635 [Pseudomonas aeruginosa 2192]
 gi|9948579|gb|AAG05912.1|AE004679_6 probable two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|126167452|gb|EAZ52963.1| hypothetical protein PACG_01440 [Pseudomonas aeruginosa C3719]
 gi|126194333|gb|EAZ58396.1| hypothetical protein PA2G_01635 [Pseudomonas aeruginosa 2192]
          Length = 472

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R++  I    G +  +++++G G+  E +P   +R  
Sbjct: 383 RIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFY 419


>gi|330953684|gb|EGH53944.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae Cit 7]
          Length = 745

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +     +       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKMGTIGVAAMSNGAEIVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|309801426|ref|ZP_07695553.1| DNA gyrase, B subunit, C-terminal domain protein [Bifidobacterium
          dentium JCVIHMP022]
 gi|308221941|gb|EFO78226.1| DNA gyrase, B subunit, C-terminal domain protein [Bifidobacterium
          dentium JCVIHMP022]
          Length = 778

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + + +   +   G    ++ DNG G+  +
Sbjct: 42 EIIDNSVDEALAGACNHIVVTLHSDG--SVEVADNGRGIPVD 81


>gi|306822520|ref|ZP_07455898.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
          dentium ATCC 27679]
 gi|304554065|gb|EFM41974.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Bifidobacterium
          dentium ATCC 27679]
          Length = 781

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + + +   +   G    ++ DNG G+  +
Sbjct: 45 EIIDNSVDEALAGACNHIVVTLHSDG--SVEVADNGRGIPVD 84


>gi|300863788|ref|ZP_07108715.1| histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300338216|emb|CBN53861.1| histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 22/74 (29%)

Query: 24  SIAIKE----LIENSL---DAESSRVETVIA--------------GGGKSFFQITDNGFG 62
           + A++E    L++N+L    A   ++   +                       I+D+G G
Sbjct: 335 AKALREVLSNLLDNALKYTQAG-RQIYIKVKVEDRNNQNPKLSIANSPLVGIGISDSGSG 393

Query: 63  MTSEEIPMAVQRHC 76
           +  +++    +RH 
Sbjct: 394 IPPQDLEHLFERHY 407


>gi|299142890|ref|ZP_07036017.1| heat shock protein HtpG [Prevotella oris C735]
 gi|298575619|gb|EFI47498.1| heat shock protein HtpG [Prevotella oris C735]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 54/430 (12%), Positives = 125/430 (29%), Gaps = 76/430 (17%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++E++ N++DA                    +V   +    K+   I+DNG GMT EEI 
Sbjct: 29  LREMVSNAVDATQKLKTLAEKGDFKGELGELKVSIKLDEAAKT-ITISDNGIGMTEEEID 87

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRPPQNNTG 118
             + +   S       K  D+ + I      GF      S   VS  + +++R       
Sbjct: 88  KYINQIAFSGVSDFLDKYKDNANAIIGHFGLGF-----YSSFMVSDRVDIITR------- 135

Query: 119 AQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIA 178
                S ++ S       +     E+ +                     I+D  +     
Sbjct: 136 -----SYKERSKAVKWTCDGTPAFEISEA--------EKEGRGSDVVLHISDDCKEF--- 179

Query: 179 YPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTG 238
                      K    ++  +         I     E      V+ ++ +    ++    
Sbjct: 180 ---------LNKQKIEELLNKYCKFMVVPVIFGKKQEWKDGKMVDTDKDNIINHIEPLWT 230

Query: 239 IPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGRYPVVVLLLEIDPRQVDVN 298
                  + +    +     +QD+ +       +   + +  YP  +  +   PR  +  
Sbjct: 231 KAPSTLKDEDYKKFYQELYPMQDEPL-------FWIHLNVD-YPFNLTGVLYFPRIKNNI 282

Query: 299 VHPAKSYIRFRNPTIIRNFIIQSIQKAIN-KKGISTSSVLSKKMISSFHQDNAPKTHLPK 357
                    + N   + + +   + + +    G+  S  +   +  S+ Q +A    +  
Sbjct: 283 DLQRNKIQLYCNQVFVTDQVEGIVPEFLTLLHGVIDSPDIPLNVSRSYLQSDANVKKIST 342

Query: 358 YATSLTNTQEKLFLQENRLSTNDLLPSDDPTYSEDNDPVEESEATHYQLGIACAQIHQNY 417
           Y T     + +   +E+R +  +    +   +        E      +       +   Y
Sbjct: 343 YITKKVADRLQSIFKEDRKAYEEK-WDNLKLFINYGMLSHEDFYNRAKDFALFKDVDGKY 401

Query: 418 IISQTTDGLV 427
              +    L+
Sbjct: 402 FTFEEYKTLI 411


>gi|283456278|ref|YP_003360842.1| DNA gyrase subunit B [Bifidobacterium dentium Bd1]
 gi|283102912|gb|ADB10018.1| gyrB2 DNA gyrase subunit B [Bifidobacterium dentium Bd1]
          Length = 778

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + + +   +   G    ++ DNG G+  +
Sbjct: 42 EIIDNSVDEALAGACNHIVVTLHSDG--SVEVADNGRGIPVD 81


>gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 591

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 30  LIENSLDAESSR----VETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  + ++    +     I     +   + DNG G+  E+I    +R  
Sbjct: 487 LIDNAI--KYTQPEGHINVSAYIKENN-ALIIVKDNGVGIPKEDISRVFERFY 536


>gi|222147027|ref|YP_002547984.1| DNA gyrase subunit B [Agrobacterium vitis S4]
 gi|221734017|gb|ACM34980.1| DNA gyrase subunit B [Agrobacterium vitis S4]
          Length = 811

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNADG--SVTVTDNGRGIPTD 91


>gi|171742643|ref|ZP_02918450.1| hypothetical protein BIFDEN_01757 [Bifidobacterium dentium ATCC
          27678]
 gi|171278257|gb|EDT45918.1| hypothetical protein BIFDEN_01757 [Bifidobacterium dentium ATCC
          27678]
          Length = 781

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A + + +   +   G    ++ DNG G+  +
Sbjct: 45 EIIDNSVDEALAGACNHIVVTLHSDG--SVEVADNGRGIPVD 84


>gi|149926315|ref|ZP_01914577.1| sensor histidine kinase [Limnobacter sp. MED105]
 gi|149825133|gb|EDM84345.1| sensor histidine kinase [Limnobacter sp. MED105]
          Length = 539

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 31  IENSLD-AESSRVETVI--------AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++N++  + +  V   I            +    I DNG G+   E+    +RH 
Sbjct: 428 LDNAIQYSGAKAV-IRISTASVEDAENMRRCEVTIEDNGPGIPENELSRVFERHY 481


>gi|15803577|ref|NP_289610.1| DNA topoisomerase IV subunit B [Escherichia coli O157:H7 EDL933]
 gi|12517608|gb|AAG58169.1|AE005533_2 DNA topoisomerase IV subunit B [Escherichia coli O157:H7 str.
           EDL933]
          Length = 630

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 23/208 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + R H   K S+      + G  G  +  + A+S  +    R              +
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEXNVRRDGQVYNIAFENGEK 146

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--KVSF 184
                                +        F  S +   + +T V++  A+  P  +++F
Sbjct: 147 VQDLQVVGNCGKRNTGTSVHFW----PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITF 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQV 212
                 + +        N    E ++ +
Sbjct: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGL 230


>gi|332980726|ref|YP_004462167.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698404|gb|AEE95345.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 585

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 31  IENSL------DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           +EN++            ++  I   GG     I D+G GM  EE+   +      KI D
Sbjct: 480 VENAIVHGLERKQGKGNIDVDILKEGGLLKIIIQDDGMGMDDEELNKVIT--ALDKIDD 536


>gi|332291982|ref|YP_004430591.1| integral membrane sensor signal transduction histidine kinase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170068|gb|AEE19323.1| integral membrane sensor signal transduction histidine kinase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 397

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++DA     +  +         +   ITD G G+   +     +   T+K
Sbjct: 301 LIKNAIDAMKGKGALTIAIS-RDTRFAKILITDTGKGIPKSKFNNIFEPGFTTK 353


>gi|332529113|ref|ZP_08405077.1| integral membrane sensor signal transduction histidine kinase
           [Hylemonella gracilis ATCC 19624]
 gi|332041336|gb|EGI77698.1| integral membrane sensor signal transduction histidine kinase
           [Hylemonella gracilis ATCC 19624]
          Length = 474

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 30  LIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           L++N+L    A   RV+  I    G++   +TDNG G+   +      R    + + D  
Sbjct: 377 LVDNALRHTPAG-GRVDIGIEAREGRACLTVTDNGPGIPDSDRQRVFDRFY--RGNSDSF 433

Query: 86  NIHT-FG 91
           ++ +  G
Sbjct: 434 SVGSGLG 440


>gi|269839207|ref|YP_003323899.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790937|gb|ACZ43077.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 368

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 26  AIKELIENSL------DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            + +L+ N++       A    V+  I +  G++   + D G G+  E++P   +   T
Sbjct: 252 VLGQLLSNAIKYSRLKQASGLHVDLEITSEDGRTLLTVRDEGVGIPPEDLPRIFEPFFT 310


>gi|226940732|ref|YP_002795806.1| QseC [Laribacter hongkongensis HLHK9]
 gi|226715659|gb|ACO74797.1| QseC [Laribacter hongkongensis HLHK9]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           LIEN+     S V   I   G +  Q+ DNG G+  E +P   +R 
Sbjct: 336 LIENARRYGGSEVVIRIELNGPTL-QVIDNGPGVAPEVLPRLGERF 380


>gi|50379869|gb|AAT76295.1| DNA gyrase subunit B [Fusobacterium canifelinum]
          Length = 522

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   +++E  I    ++  ++ DNG G+ ++
Sbjct: 43 EIVDNSVDEALAGYCNKIEVKILP--ENIIEVVDNGRGIPTD 82


>gi|15828843|ref|NP_326203.1| topoisomerase IV subunit B [Mycoplasma pulmonis UAB CTIP]
 gi|14089786|emb|CAC13545.1| TOPOISOMERASE IV SUBUNIT B [Mycoplasma pulmonis]
          Length = 642

 Score = 42.0 bits (97), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 14/66 (21%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-------SEEIPMAV-QRHC 76
           E+ +N++D   A  +S ++  +        ++ DNG G+           + +   + H 
Sbjct: 40  EIFDNAVDEALAGYASIIKVSLTKN--QSIRVEDNGRGIPVEKHSSGKSGVELVFTELHA 97

Query: 77  TSKISD 82
             K S+
Sbjct: 98  GGKFSE 103


>gi|315304163|ref|ZP_07874542.1| histidine protein kinase SaeS [Listeria ivanovii FSL F6-596]
 gi|313627470|gb|EFR96224.1| histidine protein kinase SaeS [Listeria ivanovii FSL F6-596]
          Length = 347

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 30  LIENSL---DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQR 74
           LIEN+L   DA  + +E  I      + F + D G G++SE+IP   +R
Sbjct: 244 LIENALKFSDAG-TTIELRITSTDEATMFFVKDYGQGISSEDIPRIFER 291


>gi|312277718|gb|ADQ62375.1| Sensor protein [Streptococcus thermophilus ND03]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
            +++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 405 KKIQITIKALEDEMLVQVQDNGEGISKEDIEHIFERFYRS 444


>gi|300112751|ref|YP_003759326.1| DNA gyrase subunit B [Nitrosococcus watsonii C-113]
 gi|299538688|gb|ADJ27005.1| DNA gyrase, B subunit [Nitrosococcus watsonii C-113]
          Length = 807

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +  ++         I+DNG G+ ++
Sbjct: 44 EVVDNSIDEALAGFCDEIAVIVHSD--DSITISDNGRGIPTD 83


>gi|295133050|ref|YP_003583726.1| heat shock protein 90 [Zunongwangia profunda SM-A87]
 gi|294981065|gb|ADF51530.1| heat shock protein 90 [Zunongwangia profunda SM-A87]
          Length = 627

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 49/284 (17%)

Query: 27  IKELIENSLDA----------ESSR-------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA            +        ++  +    K    + D G GMT EE+ 
Sbjct: 29  LRELISNATDATLKLKHLTNIGETDVEYGNPVIDIKVDKENKK-IHVIDQGIGMTKEEVE 87

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQI 121
             +     S       K  D   +    G  G    S   V+H + ++++  ++   A  
Sbjct: 88  KYINEVAFSGAEEFLDKYKDSAKDSGIIGHFGLGFYSAFMVAHKVEIITKSYKDEPAAHW 147

Query: 122 AISGEKISSVRPVAMN-PGTIVEV------RDLFFTIPARLNFLKSEQVETNLITDVIRR 174
             SG    ++        GT + +       +           +K  +     I    R 
Sbjct: 148 TCSGTTEFTLEDADKQDRGTEIILHINEDDEEFLEENRIEELLVKYNKFMPIPIRFGTRE 207

Query: 175 MAIA---------YPKVSFTFSTIKSNRYKMNFQST---NGNFPERISQVIGEDFINNAV 222
             +           P+     + I +       Q T   + ++ +   ++    F     
Sbjct: 208 ETLPLPDDAPEDAKPETKTVDNIINNPDPAWTKQPTDLEDKDYKDFYRELYPMQFEEPLF 267

Query: 223 ELN-EKSNEITLQGYTGIPTFNR---GNANQFYVFINGRTVQDK 262
            ++        L G    P  ++      ++  ++ N   V D 
Sbjct: 268 HIHLNVDYPFNLTGILYFPKMSQDMNMQRDKIQLYQNQVFVTDN 311


>gi|295702505|ref|YP_003595580.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294800164|gb|ADF37230.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 448

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++      VE  I         +TD G G+  E++    +R 
Sbjct: 353 LLDNAIKYSEKAVEVTITRSESFMITVTDQGIGIPKEDLSNVYERF 398


>gi|294792391|ref|ZP_06757538.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
 gi|294456290|gb|EFG24653.1| DNA gyrase, B subunit [Veillonella sp. 6_1_27]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 52 VYEVVDNSVDEALAGYATHIEVSINPD--NSVTVVDDGRGIP 91


>gi|294794197|ref|ZP_06759333.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
 gi|294454527|gb|EFG22900.1| DNA gyrase, B subunit [Veillonella sp. 3_1_44]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 52 VYEVVDNSVDEALAGYATHIEVSINPD--NSVTVVDDGRGIP 91


>gi|282848760|ref|ZP_06258155.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
 gi|282581546|gb|EFB86934.1| DNA gyrase, B subunit [Veillonella parvula ATCC 17745]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 40 VYEVVDNSVDEALAGYATHIEVSINPD--NSVTVVDDGRGIP 79


>gi|269797076|ref|YP_003310976.1| DNA gyrase subunit beta [Veillonella parvula DSM 2008]
 gi|269093705|gb|ACZ23696.1| DNA gyrase, B subunit [Veillonella parvula DSM 2008]
          Length = 633

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  ++ +E  I     +   + D+G G+ 
Sbjct: 40 VYEVVDNSVDEALAGYATHIEVSINPD--NSVTVVDDGRGIP 79


>gi|268593226|ref|ZP_06127447.1| sensor histidine kinase UhpB [Providencia rettgeri DSM 1131]
 gi|291311275|gb|EFE51728.1| sensor histidine kinase UhpB [Providencia rettgeri DSM 1131]
          Length = 508

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  EIIERPSIAIKELIEN-SLDAESSRVETVIAGGGKSFFQ--ITDNGFGMT 64
            ++      ++EL+ N S  A+++++   +   G    Q  + DNG G+ 
Sbjct: 419 TVLFTLYRLVQELLNNISKHAKATQIHISLKQIG-DSIQLVVDDNGVGIP 467


>gi|255283759|ref|ZP_05348314.1| putative His Kinase A domain protein [Bryantella formatexigens DSM
           14469]
 gi|255265642|gb|EET58847.1| putative His Kinase A domain protein [Bryantella formatexigens DSM
           14469]
          Length = 256

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           LI+N +  + + ++E ++    G     + DNG G+  E++    +R
Sbjct: 208 LIQNVISHSHADKIEVILSKQSGNMKILLADNGTGIEKEDLKHIFER 254


>gi|168065854|ref|XP_001784861.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663567|gb|EDQ50324.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 438

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 26  AIKELIENSLDA---ESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           A+ EL++N++D     ++ V   ++   ++      I D+G GMT + +   +    ++K
Sbjct: 47  AVAELVDNAVDEFVNGATFVNVDVSLHPRNRSPMLVIEDDGGGMTPDRMRQCMSLGYSAK 106


>gi|115381152|gb|ABI96225.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 553

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
          E+++NS+D   A  S+++   I   G     + DNG G+            + +   + H
Sbjct: 14 EIMDNSVDEAMAGFSNKIILTITKEG--EIIVQDNGRGIPVGIQADSGKSALELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   I 
Sbjct: 72 AGGKFDSDSYKIS 84


>gi|158313293|ref|YP_001505801.1| hypothetical protein Franean1_1455 [Frankia sp. EAN1pec]
 gi|158108698|gb|ABW10895.1| hypothetical protein Franean1_1455 [Frankia sp. EAN1pec]
          Length = 860

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGG---KSFFQITDNGFGMTSEEIPMAVQRHCT 77
           + P  AI+EL+ N+ DA++ R    I   G        I DNG GM  E +        +
Sbjct: 50  QSPLKAIEELVVNAYDADALRCSAAIPALGSASVDIMLIIDNGAGMDHEGLKDLWHVGHS 109

Query: 78  SKISDDFSNIH 88
           +K S+  + I 
Sbjct: 110 TKRSERIATIR 120


>gi|312129503|ref|YP_003996843.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311906049|gb|ADQ16490.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 469

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 30  LIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N+L   D     V+  +   G +   ++ D+G G++SEE      R+ 
Sbjct: 128 LLSNALKFVD---KEVKVQVGEEGNEYLIRVQDDGPGISSEEPSKIFDRYY 175


>gi|307261731|ref|ZP_07543397.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306868549|gb|EFN00360.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|307257307|ref|ZP_07539077.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306864157|gb|EFM96070.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|307255152|ref|ZP_07536970.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307259589|ref|ZP_07541314.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306862025|gb|EFM94001.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306866525|gb|EFM98388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|307246171|ref|ZP_07528253.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306853106|gb|EFM85329.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|303252116|ref|ZP_07338285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|307248277|ref|ZP_07530303.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|302649098|gb|EFL79285.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|306855211|gb|EFM87388.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|294501736|ref|YP_003565436.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294351673|gb|ADE72002.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++   + ++E  +    +    ++ D G G+  E++    +R  
Sbjct: 351 LLDNAIKYSTDKIEVTVEKEQEDVIIKVKDYGIGIPKEDLAHIFERFY 398


>gi|283850445|ref|ZP_06367733.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp.
            FW1012B]
 gi|283574016|gb|EFC21988.1| multi-sensor signal transduction histidine kinase [Desulfovibrio sp.
            FW1012B]
          Length = 1094

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 24   SIAIKELIENSLDA------ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            S  +  L+ N+ DA          +   + A  G++   ITDNG G+  +        + 
Sbjct: 986  SQVVLNLLSNAKDAILANRPGGGSITIRVMARLGQAVIHITDNGGGIRPDIRDRIFDPYF 1045

Query: 77   TSK 79
            T+K
Sbjct: 1046 TTK 1048


>gi|288942373|ref|YP_003444613.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897745|gb|ADC63581.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 548

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 38/103 (36%)

Query: 4   RKLSEKIINQIAAGEIIE-RPSIAI--------------KELIENSLDAESSRVETVIAG 48
           + L  +    +A G +++ RP+  +              K LI+N++ A        +  
Sbjct: 403 QVLELETQRLLAGGIVVDWRPATLLPELNGHKNQLRAMFKHLIDNAIQA--------LRE 454

Query: 49  GGK---SFF------------QITDNGFGMTSEEIPMAVQRHC 76
            G+                  +I DNG G+T E+     +   
Sbjct: 455 SGRPNRELILTTRPLDRGVEVEIQDNGRGITPEDRYRVFEPFH 497


>gi|190150573|ref|YP_001969098.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|307263918|ref|ZP_07545522.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|189915704|gb|ACE61956.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 7 str. AP76]
 gi|306870783|gb|EFN02523.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|189424888|ref|YP_001952065.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189421147|gb|ACD95545.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 839

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 6/27 (22%), Positives = 15/27 (55%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
              ++D+G G+  +++P+  +   T K
Sbjct: 763 LITVSDSGHGIPPQDLPLIFEPFFTRK 789


>gi|154499984|ref|ZP_02038022.1| hypothetical protein BACCAP_03641 [Bacteroides capillosus ATCC
           29799]
 gi|150271582|gb|EDM98839.1| hypothetical protein BACCAP_03641 [Bacteroides capillosus ATCC
           29799]
          Length = 496

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 11/54 (20%)

Query: 30  LIENSLDAESS------RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           L+EN++            V   +   GKS   ++ D G G+  E++P    R  
Sbjct: 388 LMENAI----KYNLPRGTVTVTLFVRGKSTILRVEDTGVGIPEEDLPKVFDRFY 437


>gi|149179236|ref|ZP_01857801.1| sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148841915|gb|EDL56313.1| sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 20/69 (28%)

Query: 31  IENSLDAESSR----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           I+N++   +S     V+  ++ GG+   ++ DNG G+  E             I  D   
Sbjct: 231 IDNAIKYGASEPQILVQVRVSKGGRVIARVMDNGEGVDPE-------------IRKDIFK 277

Query: 87  IHTFGFRGE 95
           I    +RGE
Sbjct: 278 IF---YRGE 283


>gi|126208721|ref|YP_001053946.1| DNA topoisomerase IV subunit B [Actinobacillus pleuropneumoniae
          L20]
 gi|307250504|ref|ZP_07532449.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|126097513|gb|ABN74341.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
 gi|306857446|gb|EFM89557.1| DNA topoisomerase 4 subunit B [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|116326225|ref|YP_802945.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
          phage RB32]
 gi|228861318|ref|YP_002854339.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|115343818|gb|ABI94827.1| DNA topoisomerase subunit DNA-dependent ATPase [Enterobacteria
          phage RB32]
 gi|227438334|gb|ACP30647.1| gp60plus39 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|291290216|dbj|BAI83011.1| topoisomerase II large subunit [Enterobacteria phage AR1]
          Length = 605

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 27 IK---ELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMT 64
          +K   E+I+NS+D         ++++   I         + DNG G+ 
Sbjct: 49 VKLIDEIIDNSVDEGIRTKFKFANKINVTIKNN---QVTVEDNGRGIP 93


>gi|81251066|gb|ABB69871.1| DNA gyrase subunit B [Nitrosospira sp. PJA1]
          Length = 555

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 17/75 (22%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMAV------Q 73
           E+++N++D   A     +  +I     +   + DNG G+       +E+  +       +
Sbjct: 55  EVLDNAIDEALAGHCDEISVIIHPD--NSITVQDNGRGIPTGIKQDDELKRSAAEIVMTE 112

Query: 74  RHCTSKISDDFSNIH 88
            H   K   D   + 
Sbjct: 113 LHAGGKFDSDSYKVS 127


>gi|154175135|ref|YP_001408306.1| heat shock protein 90 [Campylobacter curvus 525.92]
 gi|112803176|gb|EAU00520.1| ATPase, AAA family protein [Campylobacter curvus 525.92]
          Length = 619

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 40/151 (26%)

Query: 27  IKELIENSLDA--------------ES----SRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA              ++     R++  I    K    I+DNG GM+ +E+
Sbjct: 30  LRELISNASDALDKLNYLCLTDDAYKALNYTPRIDIAIDK-KKKTITISDNGIGMSKDEL 88

Query: 69  PM---AVQRHCTSK-----ISDDFSNIHTF------GFRGEALPSIGAVS-HLTLMSRPP 113
                 + R  T K     +S D     +       GF      S   V+  + ++SR  
Sbjct: 89  ISNLGTIARSGT-KGFLNNLSGDAKKDSSLIGQFGVGF-----YSAFMVAKKIEVISRKA 142

Query: 114 QNNTGAQIAISGEKISSVRPVAMNPGTIVEV 144
            +    +     +            GT + +
Sbjct: 143 LSEEAYKWTSDAKSYEIATAKKEAHGTSITL 173


>gi|158422218|ref|YP_001523510.1| HupT protein [Azorhizobium caulinodans ORS 571]
 gi|46392526|gb|AAS91022.1| HupT [Azorhizobium caulinodans ORS 571]
 gi|158329107|dbj|BAF86592.1| HupT protein [Azorhizobium caulinodans ORS 571]
          Length = 456

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA--ES--SRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA   +   R+E      G +   ++ D+G G+  + +        T+K
Sbjct: 355 LVQNALDALEGAPVRRLEITGRREGERVVVRVRDSGPGIAPDILSRVFDPFFTTK 409


>gi|19979613|dbj|BAB88762.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
 gi|19979615|dbj|BAB88763.1| subunit B protein of DNA gyrase [Bradyrhizobium japonicum]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +SRV+ ++     +   + D+G G+  +
Sbjct: 12 VYEVVDNAIDEALAGHASRVDVILNAD--NSVTVRDDGRGIPVD 53


>gi|9632631|ref|NP_049621.1| gp39 topoisomerase II, large subunit, N-terminal region
          [Enterobacteria phage T4]
 gi|1351264|sp|P09176|TOPL_BPT4 RecName: Full=DNA topoisomerase large subunit; AltName:
          Full=Protein Gp39
 gi|5354255|gb|AAD42462.1|AF158101_49 gp39 topoisomerase II, large subunit, N-terminal region
          [Enterobacteria phage T4]
 gi|728617|emb|CAA29569.1| DNA topoisomerase large subunit [Enterobacteria phage T4]
          Length = 516

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 27 IK---ELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMT 64
          +K   E+I+NS+D         ++++   I         + DNG G+ 
Sbjct: 49 VKLIDEIIDNSVDEGIRTKFKFANKINVTIKNN---QVTVEDNGRGIP 93


>gi|89097112|ref|ZP_01170002.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087935|gb|EAR67046.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 361

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 32  ENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           +NSL   D  S R++  +  G +    +I DNG G+  E++P   
Sbjct: 262 QNSLKYMDKTSKRIQIRLTSGTEDLEVEIKDNGAGIGKEDLPRIF 306


>gi|53728805|ref|ZP_00135065.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), B subunit [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
          Length = 637

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  +S+++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGYASQIDVILHTD--NSLEVIDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|313107421|ref|ZP_07793611.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310880113|gb|EFQ38707.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 472

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R++  I    G +  +++++G G+  E +P   +R  
Sbjct: 383 RIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFY 419


>gi|302188285|ref|ZP_07264958.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIA----GGGKSFFQIT 57
           L   + +++   +++         L+ N +DA    E+ + +  +      GG   F + 
Sbjct: 236 LPPLLADRVQIQQVLLN-------LMLNGVDAMKRLEADQAQLEVRVGWHDGGNIGFSVI 288

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+  E +        T+K
Sbjct: 289 DNGIGVPPENLHQLFDAFYTTK 310


>gi|298293999|ref|YP_003695938.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296930510|gb|ADH91319.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 457

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 31  IENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           +EN++D  +SRV+ V +  G+     ITD+G G   E +      + TS
Sbjct: 331 VENAVDFAASRVDIVASWTGEDITVTITDDGPGFPPELLDQIGAPYVTS 379


>gi|291562298|emb|CBL41114.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 446

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           L+ NS+ A     + ++   ++  GG + F ++DNG GM  EE+  A +   T  I+
Sbjct: 342 LLTNSMRAVSRDGTGKICLSVSSDGGMTTFCVSDNGKGMNEEELKRAREPFYTKSIN 398


>gi|255514056|gb|EET90319.1| DNA topoisomerase VI, B subunit [Candidatus Micrarchaeum
          acidiphilum ARMAN-2]
          Length = 541

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 20 IERPSIAIKELIENSLDA--ESS---RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAV 72
          +      + E + NSLDA  E+     +   +      +   ++ DNG G+         
Sbjct: 36 VHSLVTVVHEYVTNSLDACEEAGILPDISVEVRPVEEDRYLVRVRDNGPGIPK---KFVG 92

Query: 73 QRHCT 77
          +   T
Sbjct: 93 KALAT 97


>gi|163803900|ref|ZP_02197740.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4]
 gi|159172299|gb|EDP57187.1| DNA topoisomerase IV subunit B [Vibrio sp. AND4]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDTKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TF+       K +         + +++
Sbjct: 200 ITFT--DKVNNKDHKWYYEDGLKDYLAE 225


>gi|308801547|ref|XP_003078087.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
 gi|116056538|emb|CAL52827.1| putative DNA gyrase B subunit (ISS) [Ostreococcus tauri]
          Length = 684

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A  +S V+  +   G  F  + D+G G+ ++
Sbjct: 96  EVLDNSVDEVQAGHASHVQVTVDDDG--FVTVMDDGRGIPTD 135


>gi|10945655|gb|AAG24635.1|AF301148_1 putative histidine protein kinase [Anabaena variabilis ATCC 29413]
          Length = 445

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 15/62 (24%)

Query: 33  NSLDA-------------ESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           N++DA              S  +     +        +I DNG GM+   +        T
Sbjct: 338 NAIDALQEGCKVINQGEKNSRPITISTEVKNAESILIRIADNGPGMSDSVLSKIFDPFFT 397

Query: 78  SK 79
           +K
Sbjct: 398 TK 399


>gi|83591412|ref|YP_425164.1| heat shock protein 90 [Rhodospirillum rubrum ATCC 11170]
 gi|116256801|sp|Q2RYB8|HTPG_RHORT RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|83574326|gb|ABC20877.1| chaperone protein Hsp90 [Rhodospirillum rubrum ATCC 11170]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 67/156 (42%)

Query: 19  IIERPSI----AIKELIENSLDA------------------ESSRVETVIA-GGGKSFFQ 55
           ++          ++ELI N+ DA                   + R+   I    G     
Sbjct: 19  VVHSLYSDRKIFLRELISNASDACDKLRYEGLTQPALLEGDGAFRIRLSIDAEAGT--LT 76

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRG-----EAL-----PSIGAVS- 104
           I DNG GM   E+                 N+ T    G     EAL      + G VS 
Sbjct: 77  IADNGIGMNRHEL---------------IENLGTIARSGTQAFAEALKAKSQAASGDVSL 121

Query: 105 ----------------HLTLMSRPPQNNTGAQIAIS 124
                            + +++R      G + +  
Sbjct: 122 IGQFGVGFYSAFMVADKVEVVTRRAGEAQGWRWSSD 157


>gi|26988136|ref|NP_743561.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida KT2440]
 gi|24982867|gb|AAN67025.1|AE016331_2 C4-dicarboxylate transport sensor protein [Pseudomonas putida
           KT2440]
          Length = 585

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA       R+E  I          + D+G G+   ++        
Sbjct: 476 RLEQVLINLLHNALDAMLDKRYKRLEIRIEPDEDLWRLSVLDSGGGIAEADLAKVFDPFF 535

Query: 77  TSK 79
           T+K
Sbjct: 536 TTK 538


>gi|30249700|ref|NP_841770.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30180737|emb|CAD85649.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 498

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 37  AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMA 71
           A +S V   +A  G   + ++TDNG G+T+ ++   
Sbjct: 413 ANASEVRVKLAETGSQVYLEVTDNGCGITNPDMEKV 448


>gi|330964415|gb|EGH64675.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESS--------RVETVIAGGGKSFFQIT 57
           L   + +++   +++         L+ N +DA S          +      GG   F + 
Sbjct: 236 LPPLLADRVQIQQVLLN-------LMLNGVDAMSKVETDQAQLEIRVDWREGGDIGFAVR 288

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+ ++          T+K
Sbjct: 289 DNGIGVPADNTDRLFDAFYTTK 310


>gi|330878193|gb|EGH12342.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESS--------RVETVIAGGGKSFFQIT 57
           L   + +++   +++         L+ N +DA S          +      GG   F + 
Sbjct: 236 LPPLLADRVQIQQVLLN-------LMLNGVDAMSKVETDHAQLEIRVDWREGGDIGFAVR 288

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+ ++          T+K
Sbjct: 289 DNGIGVPADNTDRLFDAFYTTK 310


>gi|330501591|ref|YP_004378460.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01]
 gi|328915877|gb|AEB56708.1| DNA topoisomerase IV subunit B [Pseudomonas mendocina NK-01]
          Length = 632

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  +  ++ ++     +  ++ D+G GM      EE    +
Sbjct: 32  TRPNHLAQEVIDNSVDEALAGHAKSIQVILHED--NSLEVLDDGRGMPVDIHPEEGVPGV 89

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE 126
            + + + H   K S+      + G  G  +  + A+S  + +  +   N      A   +
Sbjct: 90  ELILTKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSTRVVVTVKRDGNEYQMSFADGFK 148

Query: 127 KISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS--F 184
                    +           +        +  S +   + +  V++  A+  P +S  F
Sbjct: 149 ASDLEVIGTVGKRNTGTSVHFW----PDAKYFDSFKFSVSRLKHVLKAKAVLCPGLSVTF 204

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQ 211
                      +          + +S+
Sbjct: 205 EDKAAGEKVEWLYEDGLRSYLVDAVSE 231


>gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
            17393]
 gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
            17393]
          Length = 1391

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 30   LIENSL----DAESSRVETVIA----GGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
            L+ N++    D    R++  +A     GG+      + D G G+ +E++     R   SK
Sbjct: 1000 LVSNAIKFTPDGG--RIDIFVASIKGEGGEKLLYMNVCDTGHGIVTEDMEKIFDRFYQSK 1057


>gi|170721753|ref|YP_001749441.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759756|gb|ACA73072.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 689

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 28/88 (31%)

Query: 15  AAGEIIERPSIAIKELIENSL--------DAESSRVETVIAG------GGKS-------- 52
            A   +  P+       EN+L        DA  + +             G          
Sbjct: 419 KASTCLVDPAQV-----ENALLNLCINSRDAGGAEISVSTFNQALQPGPGLDPELPPGTY 473

Query: 53  -FFQITDNGFGMTSEEIPMAVQRHCTSK 79
               + DNG GM +E +    +   T+K
Sbjct: 474 LTVCVADNGIGMNAETLSRVFEPFFTTK 501


>gi|149369783|ref|ZP_01889634.1| DNA gyrase subunit B [unidentified eubacterium SCB49]
 gi|149356274|gb|EDM44830.1| DNA gyrase subunit B [unidentified eubacterium SCB49]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+I+NS+D   A     V+  I     +   + DNG G+  +
Sbjct: 53 VYEVIDNSIDEALAGHCDTVDVWINED--NSITVRDNGRGIPVD 94


>gi|149196297|ref|ZP_01873352.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155]
 gi|149140558|gb|EDM28956.1| DNA gyrase subunit B [Lentisphaera araneosa HTCC2155]
          Length = 838

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 30/205 (14%)

Query: 27  IKELIENSLD---AE-SSRVETV--IAGGGKSFFQITDNGFGMT----SEE----IPMAV 72
           + E+++NS+D   A   + +     I         + D+G G+      EE    + + +
Sbjct: 46  VYEVVDNSIDEALAGHCNNITVKLHIDN----SVTVVDDGRGIPVNIHEEEGIPAVELVL 101

Query: 73  QR-HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISS 130
            + H   K   D   + + G  G  +  + A+S  + +  +  ++ T   I        +
Sbjct: 102 TKLHAGGKFDKDSYKV-SGGLHGVGVSCVNALSEWMEV--KVHRDETLHFIRFERGLTET 158

Query: 131 VRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST-- 188
                 +  T +   ++ F  P    F ++   + +++   +R +A   P ++  F    
Sbjct: 159 SLKTIGH--TNITGTEVIFK-PDFEIFTETLIYKWDILAKRLRELAFLNPGITINFIDER 215

Query: 189 --IKSNRYKMNFQSTNGNFPERISQ 211
                 R    F    G F + ++ 
Sbjct: 216 AEDGERRETFYFPGGIGEFVKHLND 240


>gi|120437370|ref|YP_863056.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117579520|emb|CAL67989.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 382

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA      ++  I     ++   I D G G+   +     +   TSK
Sbjct: 287 LVKNAIDAMRGRGELQIEIKQDMKQAHIYIIDTGKGIDKNKYKSIFEPGQTSK 339


>gi|116074819|ref|ZP_01472080.1| heat shock protein 90 [Synechococcus sp. RS9916]
 gi|116068041|gb|EAU73794.1| heat shock protein 90 [Synechococcus sp. RS9916]
          Length = 636

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 34/126 (26%)

Query: 27  IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N+ DA S R                V   I    K+   I+DNG GMT++E+  
Sbjct: 32  LRELVSNAADAISKRRMAAMAGDCSEGEEGKVAIRIDREQKT-ITISDNGIGMTADEVKR 90

Query: 71  AVQRHCTSKISDDFSNIHT----------FGFRGEALPSIGAVSH-LTLMSRPPQ-NNTG 118
            + +   S   D                  GF      S   V+  + L+SR  + ++  
Sbjct: 91  YINQVAFSSAEDFLEKYKQEEDAIIGHFGLGF-----YSSFMVAREVELVSRSARPDSEA 145

Query: 119 AQIAIS 124
            +    
Sbjct: 146 VKWRCD 151


>gi|87199649|ref|YP_496906.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135330|gb|ABD26072.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 513

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 22  RPSIAIKELIENSL--DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    I+ +++N++   + +  VE  I    G +  +++D G G+ +E+IP   QR 
Sbjct: 399 RLQQVIRIVVDNAVCYSSHAPHVEVAIRQEEGDAVIEVSDQGDGIPAEDIPHLFQRF 455


>gi|116754690|ref|YP_843808.1| DNA gyrase, B subunit [Methanosaeta thermophila PT]
 gi|116666141|gb|ABK15168.1| DNA gyrase subunit B [Methanosaeta thermophila PT]
          Length = 628

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          +      + E+++NS+D   A     +  VI G G     + D+G G+  +
Sbjct: 33 VHGLHHLVYEVVDNSVDEAMAGYCKEISVVIHGDG--SVSVKDDGRGIPVD 81


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 27/52 (51%), Gaps = 7/52 (13%)

Query: 30  LIENSLDAESS----RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++  + +    +++  +   G +  FQ++DNG G+   ++P    +  
Sbjct: 541 LLDNAI--KYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFY 590


>gi|320104489|ref|YP_004180080.1| GAF sensor signal transduction histidine kinase [Isosphaera pallida
           ATCC 43644]
 gi|319751771|gb|ADV63531.1| GAF sensor signal transduction histidine kinase [Isosphaera pallida
           ATCC 43644]
          Length = 606

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 30  LIENSLDA----ESSRVETVIAGGG---KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA    ES RV            +   + DNG G+   E     +   +SK
Sbjct: 478 LVGNALDAVEEVESPRVVLSTHYDPHTAIARIVVEDNGKGIPESERDTIFEWFASSK 534


>gi|317401580|gb|EFV82208.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30  LIENSLD---AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++    A  +R+E  I    G     + D G G+ + ++    +   
Sbjct: 668 LIDNAIKYSPAG-TRIECAIDQAAGFWRIHVRDQGQGIAAHDLARLFEPFS 717


>gi|315647963|ref|ZP_07901064.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315276609|gb|EFU39952.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 333

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 38  ESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            +  +    +     +   ITDNG G+  E++P   +R  
Sbjct: 247 GA--IAITYSENTLFTEIVITDNGIGIPKEDLPYIFKRFY 284


>gi|260429859|ref|ZP_05783835.1| integral membrane sensor signal transduction histidine kinase
           [Citreicella sp. SE45]
 gi|260419342|gb|EEX12596.1| integral membrane sensor signal transduction histidine kinase
           [Citreicella sp. SE45]
          Length = 525

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 5/56 (8%)

Query: 25  IAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             +  LI N++       + R+E      G     + DNG G+ + +     +R  
Sbjct: 414 QVVVGLIRNAIRHARQGGALRLELT-EAEGMGVIAVIDNGPGIPAADQARIFERFA 468


>gi|300777682|ref|ZP_07087540.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
          gleum ATCC 35910]
 gi|300503192|gb|EFK34332.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Chryseobacterium
          gleum ATCC 35910]
          Length = 628

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 9/43 (20%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+++NS+D     A   R+E  +  G      I D G G+ 
Sbjct: 48 LKEILDNSIDEFRMRAG-KRIEIKLDDG---KVTIRDFGRGIP 86


>gi|222080842|ref|YP_002540205.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221725521|gb|ACM28610.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30  LIENSLDAES---SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LIEN++ A +   + V   +   G      + DNG G+  ++     QR  
Sbjct: 364 LIENAI-AYAGRGTEVTVRVEAKGEVVCLDVEDNGTGIPLDKRQSVRQRFA 413


>gi|218781946|ref|YP_002433264.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218763330|gb|ACL05796.1| DNA gyrase, B subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 812

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E     + E+++NS+D   A     ++  I     +   + DNG G+ 
Sbjct: 33 EGLHHLVYEVVDNSIDEAMAGYCDHIQVTIHED--NSVTVEDNGRGIP 78


>gi|167041928|gb|ABZ06666.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
          [uncultured marine microorganism HF4000_137B17]
          Length = 334

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A     + ++  I         + DNG G+  +
Sbjct: 49 VYEVVDNSIDEALDGYCTNIKVTINSD--QSISVEDNGRGIPVD 90


>gi|153806349|ref|ZP_01959017.1| hypothetical protein BACCAC_00608 [Bacteroides caccae ATCC 43185]
 gi|149131026|gb|EDM22232.1| hypothetical protein BACCAC_00608 [Bacteroides caccae ATCC 43185]
          Length = 425

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           RVE +I+  G     ++DNG G+  + +        T+K
Sbjct: 347 RVEVIISPAGNKLLTVSDNGEGILPDVLDKIFVPFFTTK 385


>gi|87199529|ref|YP_496786.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135210|gb|ABD25952.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 478

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 30  LIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI N +D     A S+ V +     G    +++D+G G+   E     +R  
Sbjct: 374 LIANLIDNGICHARSTVVVSAAKQSGLVLLRVSDDGPGIPEGERQRIFERFA 425


>gi|27544666|dbj|BAC55028.1| DNA gyrase B subunit [Legionella quinlivanii]
          Length = 299

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I         + D+G G+ 
Sbjct: 14 EVVDNSIDEALAGHCKEIHVRIHAD--ESITVKDDGRGIP 51


>gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score = 42.0 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 30  LIENSL----DAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHC 76
           LIEN++    D   +  +  +    +      ++ DNG G+  E+I    +R  
Sbjct: 470 LIENAIKYSKD---TSGKVEVLSYNEDKYYCLRVKDNGIGIPKEDISRIFERFY 520


>gi|332668538|ref|YP_004451545.1| DNA gyrase subunit B [Cellulomonas fimi ATCC 484]
 gi|332337575|gb|AEE44158.1| DNA gyrase, B subunit [Cellulomonas fimi ATCC 484]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E  + A GG    ++ DNG G+  E
Sbjct: 52 VYEVVDNSVDEALAGYCDTIEVTLLADGG---VRVADNGRGIPVE 93


>gi|323358675|ref|YP_004225071.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Microbacterium testaceum StLB037]
 gi|323275046|dbj|BAJ75191.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Microbacterium testaceum StLB037]
          Length = 410

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 17  GEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMA 71
           G + +     +  L+ N+  AE+S    R++ ++  G +     + D+G G+   +    
Sbjct: 299 GTVDDDVLTVLGNLVRNA--AEASGPSGRIDVLVLAGDERVTIDVADDGPGVAPADAARI 356

Query: 72  VQRHCTSK 79
             R  +SK
Sbjct: 357 FDRGVSSK 364


>gi|329942345|ref|ZP_08291155.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Chlamydophila psittaci Cal10]
 gi|332286986|ref|YP_004421887.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 6BC]
 gi|313847583|emb|CBY16571.1| putative DNA gyrase subunit b or topoisomerase IV subunit b
           [Chlamydophila psittaci RD1]
 gi|325506566|gb|ADZ18204.1| DNA topoisomerase IV subunit B [Chlamydophila psittaci 6BC]
 gi|328815255|gb|EGF85243.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Chlamydophila psittaci Cal10]
 gi|328914217|gb|AEB55050.1| DNA topoisomerase II domain protein [Chlamydophila psittaci 6BC]
          Length = 602

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 19/169 (11%)

Query: 28  KELIENSLDA-----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKIS 81
           KE+++N++D          +         S   + D+G G+   ++   V +  T +K +
Sbjct: 44  KEVVDNAIDEFIMGYG-KTISIFTDD---STITVRDSGRGIPLGKMIDCVSKINTGAKYT 99

Query: 82  DDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGT 140
            D  +  + G  G  L ++ A+S   T+ S   +    A       + S         GT
Sbjct: 100 QDVFH-FSVGLNGVGLKAVNALSEKFTVRSVRKKKYHYATFYKGVLQDSRQGSTKDPDGT 158

Query: 141 IVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
            +                 +       +   IRR    +P +    +  
Sbjct: 159 EITFS-------PDPTIFTNFAFNDEFLRKKIRRYTYLHPGLEIICNNE 200


>gi|314121567|ref|YP_004063686.1| DNA topoisomerase II large subunit [Enterobacteria phage
          vB_EcoM-VR7]
 gi|313151324|gb|ADR32380.1| DNA topoisomerase II large subunit [Enterobacteria phage
          vB_EcoM-VR7]
          Length = 609

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 13/49 (26%)

Query: 26 AIK---ELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMT 64
           +K   E+I+NS+D         +++++  I         ++DNG G+ 
Sbjct: 48 IVKLIDEIIDNSVDEAIRTSFKFANKIDVQIKDN---QISVSDNGRGIP 93


>gi|308814356|ref|YP_003934630.1| topoisomerase II large subunit N-terminal region [Shigella phage
          SP18]
 gi|308205948|gb|ADO19347.1| topoisomerase II large subunit N-terminal region [Shigella phage
          SP18]
          Length = 610

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 13/49 (26%)

Query: 26 AIK---ELIENSLDAE-------SSRVETVIAGGGKSFFQITDNGFGMT 64
           +K   E+I+NS+D         +++++  I         ++DNG G+ 
Sbjct: 49 IVKLIDEIIDNSVDEAIRTSFKFANKIDVQIKDN---QISVSDNGRGIP 94


>gi|255534405|ref|YP_003094776.1| heat shock protein 90 [Flavobacteriaceae bacterium 3519-10]
 gi|255340601|gb|ACU06714.1| Chaperone protein HtpG [Flavobacteriaceae bacterium 3519-10]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 26/123 (21%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA                  + ++E  I   GK    I+D G GMT+EE+ 
Sbjct: 52  LRELISNATDATLKLKHLTNIGEANVDYGTPQIEVKIDKEGKKL-HISDQGIGMTTEEVE 110

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQI 121
             + +   S       K  D   +    G  G    S   V+  + ++++  ++    + 
Sbjct: 111 KYINQVAFSGAEEFLEKYKDSAKDAGIIGHFGLGFYSAFMVAEKVEILTKSYKDEPAVRW 170

Query: 122 AIS 124
              
Sbjct: 171 ICD 173


>gi|311740195|ref|ZP_07714027.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304750|gb|EFQ80821.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 503

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L+ N +     DA    V   +          ++D+G GM+ E+     +R 
Sbjct: 389 RLHQVLLNLVTNGIRHGGEDA---TVTLRLRREANDVLIDVSDDGKGMSQEDAAHIFERF 445

Query: 76  C---TSKISD 82
               TS+  D
Sbjct: 446 YRADTSRTRD 455


>gi|256374166|ref|YP_003097826.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827]
 gi|255918469|gb|ACU33980.1| DNA gyrase, B subunit [Actinosynnema mirum DSM 43827]
          Length = 657

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 15/75 (20%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQR 74
           I+E+++NS+D   A  +S+V   +   G    ++ D+G G+  +         + + + +
Sbjct: 42  IQEVVDNSVDEAMAGYASKVVVTLLANG--GVRVVDDGRGIPVDLHPVEGKPTLEVVLTK 99

Query: 75  -HCTSKISDDFSNIH 88
            H   K   D   + 
Sbjct: 100 LHAGGKFDSDSYAVS 114


>gi|194339063|gb|ACF49447.1| GyrB [Amycolatopsis coloradensis]
          Length = 457

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 19/73 (26%)

Query: 31 IENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE----------EIPMAVQRH 75
          ++NS+D   A  +++VE  + A GG    ++ D+G G+  +          E+ + V  H
Sbjct: 2  VDNSVDEAMAGHATKVEVTLLADGG---VRVVDDGRGIPVDMHPKEKKPTLEVVLTVL-H 57

Query: 76 CTSKISDDFSNIH 88
             K   D   + 
Sbjct: 58 AGGKFDSDSYAVS 70


>gi|152990699|ref|YP_001356421.1| heat shock protein 90 [Nitratiruptor sp. SB155-2]
 gi|151422560|dbj|BAF70064.1| heat shock protein HtpG [Nitratiruptor sp. SB155-2]
          Length = 603

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 31/192 (16%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTS----EEIPMAVQRHCTS---KISDDFSNIHTF--- 90
           ++   +         ++DNG GM      E +    +    S   K++ D          
Sbjct: 61  KITITLDEAENRLI-VSDNGIGMDDVDMVENLGTIAKSGTKSFLEKLTGDTKKDAHLIGQ 119

Query: 91  ---GFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGE-KISSVRPVAMNPGTIVEVR 145
              GF      S   V+  + ++S+   +      +     +           GT V   
Sbjct: 120 FGVGF-----YSAFMVAKRVEVVSKKVGDEKAWIWSSEANGEFEIDEATRKEQGTDV--- 171

Query: 146 DLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNF 205
            + +       FL+        I +++++ +   P                + ++     
Sbjct: 172 -ILYLTEENKEFLQEW-----RIKEIVKKYSDHIP-YKIYLKIDDKEEQINSAKALWRMS 224

Query: 206 PERISQVIGEDF 217
              I +   ++F
Sbjct: 225 KNEIKEEEYKEF 236


>gi|150399069|ref|YP_001322836.1| DNA topoisomerase VI subunit B [Methanococcus vannielii SB]
 gi|150011772|gb|ABR54224.1| DNA topoisomerase VI, B subunit [Methanococcus vannielii SB]
          Length = 666

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 25  IAIKELIENSLDA--ESS---RVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQR-HC 76
             + EL+ NS+DA  ES     +   +   G   F +   DNG G+  E +     +   
Sbjct: 46  TIVHELVTNSMDACEESEILPEILVEVKKVGSETFTVIIEDNGPGIPPEYVSKVFGKMLA 105

Query: 77  TSKIS 81
            SK+ 
Sbjct: 106 GSKLH 110


>gi|157963416|ref|YP_001503450.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157848416|gb|ABV88915.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 464

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 30  LIENSLDAES--SRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA S  S +              + D+G GMT EE+  A +   ++K
Sbjct: 367 LLCNALDASSPQSSIIVSATQDEHKVCVYVEDSGCGMTEEELAHATELFYSTK 419


>gi|13242537|ref|NP_077550.1| EsV-1-65 [Ectocarpus siliculosus virus 1]
 gi|13177344|gb|AAK14488.1|AF204951_65 EsV-1-65 [Ectocarpus siliculosus virus 1]
          Length = 767

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 16  AGEII---ERPSIAIKELIENSL---DAESSRVETVIAGG---GKSFFQ--ITDNGFGMT 64
           A E+     R    +  L+ N+L   D  S  V   +  G   G ++ +  +TD G GM+
Sbjct: 447 ASEVASDSTRIRQIVCNLVSNALKFTDNGSVSVSVDVENGPGEGTAYIRASVTDTGIGMS 506

Query: 65  SEEIPMAVQRHC 76
              +    Q   
Sbjct: 507 ESAMKKLFQPFS 518


>gi|318056541|ref|ZP_07975264.1| HSP90 family protein [Streptomyces sp. SA3_actG]
 gi|318076715|ref|ZP_07984047.1| HSP90 family protein [Streptomyces sp. SA3_actF]
          Length = 615

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 25/140 (17%)

Query: 27  IKELIENSLDA-----ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRH 75
           ++EL++N++DA      +      R+       G     ITD G G++  ++  +     
Sbjct: 41  LRELLQNAVDALTARRGADPDAPARIRLRT---GDRSLSITDTGIGLSERDMHELLATIG 97

Query: 76  CTSKISDDFSNIHTFGFRGEA----LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV 131
            +SK  D      + GF G+     L        + ++SR  +    A +  +     S 
Sbjct: 98  RSSKRGDGLEAARS-GFLGQFGIGLLACFVVAERIRVVSRSARTPDAAPVEWTARDDGSY 156

Query: 132 R------PVAMNPGTIVEVR 145
                        GT V + 
Sbjct: 157 TVRVLDVAAHPEAGTTVRLE 176


>gi|256389439|ref|YP_003111003.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256355665|gb|ACU69162.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 566

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 19  IIERPSIAIKELIENSLDAESSR------VETVIAGG--GKSFFQITDNGFGMTSEEIPM 70
           + +R + A++ L++N+    +        VE   A G  G     + D+G G+   ++P 
Sbjct: 455 VTDRLAKAVRNLLDNA----AKFSPDGGLVEVRTAPGADGTVTLTVRDHGPGIPEADLPH 510

Query: 71  AVQRHC 76
              R  
Sbjct: 511 VFDRFY 516


>gi|209364253|ref|YP_001425349.2| DNA topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111]
 gi|207082186|gb|ABS78278.2| topoisomerase IV subunit B [Coxiella burnetii Dugway 5J108-111]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+    E I+NS+D   A  +  VE ++   G    ++ D+G GM  +         + 
Sbjct: 42  RPNHLAHEAIDNSVDEAIAGFAQNVEVILYKDG--SLEVIDDGRGMPIDVHPEHKLTGVE 99

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H  +K S      ++ G  G  +  + A+S  LT+  +             GEK
Sbjct: 100 LILTRLHAGAKFSTKTYE-YSGGLHGVGISVVNALSKKLTVQVK-KDGKIYQMDFAHGEK 157

Query: 128 ISSVRPVAMN----PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK-- 181
            S +RPV        GT +             ++  S +   + +   +R  A+  P   
Sbjct: 158 TSKLRPVGSCNKSESGTSIHFW-------PDSHYFDSVKFGVSALKHTMRAKAVLCPGLT 210

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           V F              +       + +  
Sbjct: 211 VHFIDENTGQRLQWYYAEGLKTYLADSLRD 240


>gi|215918876|ref|NP_819117.2| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 493]
 gi|206583761|gb|AAO89631.2| topoisomerase IV subunit B [Coxiella burnetii RSA 493]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+    E I+NS+D   A  +  VE ++   G    ++ D+G GM  +         + 
Sbjct: 42  RPNHLAHEAIDNSVDEAIAGFAQNVEVILYKDG--SLEVIDDGRGMPIDVHPEHKLTGVE 99

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H  +K S      ++ G  G  +  + A+S  LT+  +             GEK
Sbjct: 100 LILTRLHAGAKFSTKTYE-YSGGLHGVGISVVNALSKKLTVQVK-KDGKIYQMDFAHGEK 157

Query: 128 ISSVRPVAMN----PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK-- 181
            S +RPV        GT +             ++  S +   + +   +R  A+  P   
Sbjct: 158 TSKLRPVGSCNKSESGTSIHFW-------PDSHYFDSVKFGVSALKHTMRAKAVLCPGLT 210

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           V F              +       + +  
Sbjct: 211 VHFIDENTGQRLQWYYAEGLKTYLADSLRD 240


>gi|253702309|ref|YP_003023498.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           sp. M21]
 gi|251777159|gb|ACT19740.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           sp. M21]
          Length = 482

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 30  LIENSL--DAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           LI N+L    +S R+   I     GG +   + DNG GM   E+P    R   S
Sbjct: 368 LISNALHYTPKSGRISLRIEPQRDGGVA-IAVADNGMGMEEAELPRVFDRFYRS 420


>gi|29830269|ref|NP_824903.1| hypothetical protein SAV_3726 [Streptomyces avermitilis MA-4680]
 gi|29607380|dbj|BAC71438.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 582

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 22 RPSIAIKELIENSLDAESSRVETVIAGG----GKSFFQITDNGFGMTSEEIPMAVQ 73
            + A  E I+NS++A ++ ++     G            DNG G+ +E + +A+ 
Sbjct: 41 DLTAAAGEPIDNSIEAGATHIKIATTFGPQKRSIEEIAFADNGRGIKTEILALALS 96


>gi|28565760|gb|AAO43432.1| DNA gyrase subunit B [Entomoplasma luminosum]
          Length = 555

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAVQR-H 75
          E+++NS+D   A  +  V+  I    +    + D+G G+    +++     + +   + H
Sbjct: 17 EILDNSIDEVMAGYAQHVKVTITK--EDEIIVQDDGRGIPVGINQDTGRPAVELVFTQLH 74

Query: 76 CTSKISDDFSNIH 88
             K   D   + 
Sbjct: 75 AGGKFDSDSYKVS 87


>gi|161830424|ref|YP_001596021.1| DNA topoisomerase IV subunit B [Coxiella burnetii RSA 331]
 gi|161762291|gb|ABX77933.1| DNA topoisomerase IV, B subunit [Coxiella burnetii RSA 331]
          Length = 636

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 31/210 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIP 69
           RP+    E I+NS+D   A  +  VE ++   G    ++ D+G GM  +         + 
Sbjct: 37  RPNHLAHEAIDNSVDEAIAGFAQNVEVILYKDG--SLEVIDDGRGMPIDVHPEHKLTGVE 94

Query: 70  MAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
           + + R H  +K S      ++ G  G  +  + A+S  LT+  +             GEK
Sbjct: 95  LILTRLHAGAKFSTKTYE-YSGGLHGVGISVVNALSKKLTVQVK-KDGKIYQMDFAHGEK 152

Query: 128 ISSVRPVAMN----PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPK-- 181
            S +RPV        GT +             ++  S +   + +   +R  A+  P   
Sbjct: 153 TSKLRPVGSCNKSESGTSIHFW-------PDSHYFDSVKFGVSALKHTMRAKAVLCPGLT 205

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERISQ 211
           V F              +       + +  
Sbjct: 206 VHFIDENTGQRLQWYYAEGLKTYLADSLRD 235


>gi|226946371|ref|YP_002801444.1| DNA topoisomerase IV subunit B [Azotobacter vinelandii DJ]
 gi|226721298|gb|ACO80469.1| DNA topoisomerase IV, B subunit [Azotobacter vinelandii DJ]
          Length = 630

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  V+ ++     +  ++ D+G GM  +
Sbjct: 30 TRPNHLAQEVIDNSVDEALAGHAKSVQVILHED--NSLEVIDDGRGMPVD 77


>gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 592

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R    +  LI+N++     D  S  V  +I     +  Q++D G G+  +++P   +R 
Sbjct: 484 DRIEQVLTNLIDNAIRHTPAD-GSVTVS-MINEQNYAKIQVSDTGQGIPQDDLPYVFERF 541

Query: 76  CTSKISDDFSNIHTFGFRGEALP 98
                  D +   + G  G  L 
Sbjct: 542 Y----KADKARTRSKGGTGLGLA 560


>gi|320353304|ref|YP_004194643.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121806|gb|ADW17352.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 570

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+ DA         V T +    +    + DNG G+  E++ +  Q   T+K
Sbjct: 469 LLANAADACRPSGGVITVTTRLVDD-RVAVTVEDNGIGIVPEDMDLIFQPFYTTK 522


>gi|313673519|ref|YP_004051630.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940275|gb|ADR19467.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 717

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++ A      +   ++     +   + DNG G+  EE+      + + K
Sbjct: 616 LITNAIHAVKGKGLISINVSEFETYYEIVVADNGHGIPQEELGKIFLPYYSKK 668


>gi|222112673|ref|YP_002554937.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221732117|gb|ACM34937.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 357

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 14/81 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAES------SRVETVIA-GGGKSFFQITD 58
           L   I +QI   +++      +     N++DA +        +       G      ++D
Sbjct: 237 LPLAIADQIQIQQVV---GNVVL----NAIDALAPVPAPMRSIRITSETRGNAIVLAVSD 289

Query: 59  NGFGMTSEEIPMAVQRHCTSK 79
            G G+ +E      +   T+K
Sbjct: 290 TGIGIPAEVYEHLFEAFWTTK 310


>gi|218235769|ref|YP_002367954.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218163726|gb|ACK63718.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 33  NSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           NS+    DA    +E  +     S    I+DNG GM  EE+     R  
Sbjct: 363 NSIKFSNDAG--TIEFFVEELEYSVIISISDNGIGMEKEEMERIFDRFY 409


>gi|156741768|ref|YP_001431897.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156233096|gb|ABU57879.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 522

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 29  ELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+I+N++   D  +  +   +   G +   + D G G+  +E  +      
Sbjct: 409 EVIDNAIRYSDTGTVTITASVRD-GLAVITVEDQGPGIPPDERDLLFNAFY 458


>gi|116050467|ref|YP_790714.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585688|gb|ABJ11703.1| putative heavy metal sensor histidine kinase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 472

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R++  I    G +  +++++G G+  E +P   +R  
Sbjct: 383 RIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFY 419


>gi|332976000|gb|EGK12871.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Psychrobacter sp.
           1501(2011)]
          Length = 884

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A    +++ +I         + DNG G+  +
Sbjct: 71  EVVDNSIDEALAGHCDQIDIIIHED--ESVSVMDNGRGIPVD 110


>gi|328471745|gb|EGF42622.1| hypothetical protein VP10329_01280 [Vibrio parahaemolyticus
          10329]
          Length = 537

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 29 ELIENSLDAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
          E+I N+ DA++ +VE              I D+G+GM+S++I     
Sbjct: 29 EIISNAYDADADKVELNFHEQNQTPKSITIKDDGYGMSSDDIQTKFL 75


>gi|326383597|ref|ZP_08205283.1| HSP90 family protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326197681|gb|EGD54869.1| HSP90 family protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 587

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 27  IKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEE-IPMAVQRHCTSKIS 81
           ++EL++N++DA     ++     +   G  F  I+D+G GM S +   +      +SK  
Sbjct: 30  VRELLQNAIDAQTVRGTAETTVEVTADGTEF-TISDSGVGMHSGQIAELLGTIGRSSK-R 87

Query: 82  DDF--SNIHTFGFRGEALPSIGAVS--HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMN 137
           D+   S   T G  G  L S G ++   + + S+   ++    I  +G  + +       
Sbjct: 88  DELGFSEQATIGQFGVGLLS-GFLAGDRIEVSSKADGHDPVHWIGDAGGTVETGPGDRRE 146

Query: 138 PGTIVEVR 145
            GT V + 
Sbjct: 147 IGTTVRIV 154


>gi|320527132|ref|ZP_08028319.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
 gi|320132460|gb|EFW25003.1| DNA gyrase, B subunit [Solobacterium moorei F0204]
          Length = 664

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 3   IRKLS--EKIINQ----IAAGEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKS 52
           I+ L   E +  +    IA+    +     + E+++N +D   A  +S V   +      
Sbjct: 36  IQVLDGLEAVRKRPGMYIASTSS-KGLHHLVWEIVDNGIDEAMAGYASTVTVTVDKDNI- 93

Query: 53  FFQITDNGFGMT 64
              + D+G GM 
Sbjct: 94  -ITVEDDGRGMP 104


>gi|170749686|ref|YP_001755946.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656208|gb|ACB25263.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 779

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 21/82 (25%)

Query: 17  GEIIER--------------PSIAIKELIENSL----DAE-SSRVETVI--AGGGKSFFQ 55
           G ++ER               +  +  L+ N++     A    R+   +    GG    +
Sbjct: 636 GHVVERACPADLVIVTNPGVLAQIVTNLVANAVVHGFRAGEPGRITVDVSEREGGLVRME 695

Query: 56  ITDNGFGMTSEEIPMAVQRHCT 77
           + D G G+  E +        T
Sbjct: 696 VRDTGQGIPPEHLERIFDPFFT 717


>gi|81251047|gb|ABB69857.1| DNA gyrase subunit B [Nitrosospira sp. 9SS1]
          Length = 555

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 17/75 (22%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMAV------Q 73
           E+++N++D   A     +  +I     +   + DNG G+       +E   +       +
Sbjct: 55  EVLDNAIDEALAGYCDEISVIIHPD--NSITVQDNGRGIPTGIKQDDEFKRSAAEIVMTE 112

Query: 74  RHCTSKISDDFSNIH 88
            H   K + D   + 
Sbjct: 113 LHAGGKFNSDSYKVS 127


>gi|55822295|ref|YP_140736.1| sensor histidine kinase CsrS/CovS-like protein [Streptococcus
           thermophilus CNRZ1066]
 gi|55738280|gb|AAV61921.1| sensor histidine kinase (homolog to csrS/covS Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 505

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
            +++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 405 KKIQVTIKALEDEMLVQVQDNGEGISKEDIEHIFERFYRS 444


>gi|134291361|ref|YP_001115130.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134134550|gb|ABO58875.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 467

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 30  LIENSLDAESS------RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+ DA SS       +        G+    + DNG G+  E +P   +   T+K
Sbjct: 368 LIQNACDAASSAHRGTPEIWIDATHRDGQVIVTVRDNGTGIMDEHLPHLFEPFFTTK 424


>gi|46201417|ref|ZP_00208094.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 492

 Score = 42.0 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 26  AIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           A+  L++N++     D     V   +   G     ++ D+G G++ ++  +   ++  S
Sbjct: 384 AVSNLLDNAIKYSPSD---KPVTVSLDRRGTGLSIRVQDHGVGISPDDKDLIFHKYFRS 439


>gi|315927440|gb|EFV06778.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NS++A    +   +    +  GK++    I DN  G+  E +    Q + T+K
Sbjct: 202 LILNSIEAFKNKKRKIITINFSKFGKNYLKITIKDNAGGIDKENLDKIFQPYFTTK 257


>gi|309789570|ref|ZP_07684151.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228306|gb|EFO81953.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 18  EII---ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPM 70
           E++   ER   A+  L+ N++    A   ++E      G     Q+ DNG G+ +E +P 
Sbjct: 341 EVVVDDERLCRALGNLVSNAIRHTPAG-GQIELRAEQDGDHLLLQVCDNGEGIPTEHLPN 399

Query: 71  AVQR 74
             +R
Sbjct: 400 IFER 403


>gi|296531843|ref|ZP_06894648.1| sensor histidine kinase KdpD [Roseomonas cervicalis ATCC 49957]
 gi|296267813|gb|EFH13633.1| sensor histidine kinase KdpD [Roseomonas cervicalis ATCC 49957]
          Length = 271

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L     + + RV   +  G +    I D+G G+  E++P       
Sbjct: 162 LLDNALKFSGSSGAVRVR-AVREGPEYRVAIEDDGPGIPPEDLPRVFDPFH 211


>gi|296117467|ref|ZP_06836054.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC
           23769]
 gi|295975988|gb|EFG82779.1| DNA topoisomerase IV subunit B [Gluconacetobacter hansenii ATCC
           23769]
          Length = 676

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+++N++D   A  +S ++  +  G  ++  I DNG G+  +  P   QR  
Sbjct: 70  EILDNAMDEAVAGHASVIDVSLEAG--NWLTIRDNGRGIPVDPHPKFPQRSA 119


>gi|295400058|ref|ZP_06810038.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977837|gb|EFG53435.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQR 74
           +R    ++ L++N++    DA   +++  +        Q  I D+G G+  E++    QR
Sbjct: 357 DRLEQVVQNLLDNAVRYTPDAG--KIDIQLRKVSAKSCQLIIRDSGKGVPKEKLAFLGQR 414

Query: 75  H 75
            
Sbjct: 415 F 415


>gi|312110692|ref|YP_003989008.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311215793|gb|ADP74397.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQR 74
           +R    ++ L++N++    DA   +++  +        Q  I D+G G+  E++    QR
Sbjct: 357 DRLEQVVQNLLDNAVRYTPDAG--KIDIQLRKVSAKSCQLIIRDSGKGVPKEKLAFLGQR 414

Query: 75  H 75
            
Sbjct: 415 F 415


>gi|241203509|ref|YP_002974605.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857399|gb|ACS55066.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 476

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 30  LIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+EN++    D   + +   +   GG++   + D G G+ + E     +R
Sbjct: 365 LVENAINHCPD--GTDITVSLRCQGGRAIVSVADTGPGIPAGERDKVFRR 412


>gi|229000243|ref|ZP_04159812.1| C4-dicarboxylate sensor kinase [Bacillus mycoides Rock3-17]
 gi|228759575|gb|EEM08552.1| C4-dicarboxylate sensor kinase [Bacillus mycoides Rock3-17]
          Length = 533

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 30  LIENSLDAES--------SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LIEN+    S         R++  I          I DNG G+  E +P   ++  T
Sbjct: 427 LIENAF--GSFEQTEVENKRIDISIEQSEDVCAILIEDNGCGIKEEHLPRVYEKGFT 481


>gi|229013875|ref|ZP_04171003.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
 gi|228747544|gb|EEL97419.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   + +   K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|229169400|ref|ZP_04297110.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
 gi|228614163|gb|EEK71278.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   + +   K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|237731325|ref|ZP_04561806.1| sensory transduction histidine kinase [Citrobacter sp. 30_2]
 gi|226906864|gb|EEH92782.1| sensory transduction histidine kinase [Citrobacter sp. 30_2]
          Length = 593

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 25  IAIKE-----LIENSLDAESSRV--ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             + E     L+ N+  A ++ V    +   GG    Q+ DN  G+   ++  A Q   T
Sbjct: 475 SVLLEQVLANLVLNAAQAGATTVWFSALHKDGGV-RIQVQDNAGGIEEAQLYQAFQPFMT 533


>gi|170759413|ref|YP_001786437.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406402|gb|ACA54813.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 468

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           V+  ++ G  K F +I DNG G+  E++P   +R   S
Sbjct: 382 VKVSLSKGEDKIFIKIEDNGEGIPKEDLPHIFERFYRS 419


>gi|168703766|ref|ZP_02736043.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 483

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 30  LIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LD      +  V    AGGG    +++D G G++   +P       +SK
Sbjct: 382 LVLNALDVMPTGGALTVRARAAGGGIE-VEVSDTGPGISKTMLPRLFVPFASSK 434


>gi|23500335|ref|NP_699775.1| DNA topoisomerase IV subunit B [Brucella suis 1330]
 gi|23463950|gb|AAN33780.1| DNA topoisomerase IV, B subunit [Brucella suis 1330]
          Length = 699

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +
Sbjct: 96  EVIDNSMDEAVAGHANFIEVTVDKEG--FVTVSDNGRGIPVD 135


>gi|330882811|gb|EGH16960.1| hypothetical protein Pgy4_28440 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 108

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II  I    AG        AI EL+ NS+DA+++ +   +   G   F   D+G G
Sbjct: 7  LDPEIIQHIIHSQAG----SIGKAIIELVMNSVDADATALRLTMTKEG---FHCADDGRG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            +  ++     R  T
Sbjct: 60 FASRNDVLRYFGRFGT 75


>gi|329940020|ref|ZP_08289302.1| two-component sensor [Streptomyces griseoaurantiacus M045]
 gi|329300846|gb|EGG44742.1| two-component sensor [Streptomyces griseoaurantiacus M045]
          Length = 541

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 23  PSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAV 72
               +  L++N+LDA +     RVE  +   G++   ++ D G G+ ++   +  
Sbjct: 429 LVTVVGNLVDNALDAVAGTRHARVEVELRAEGRTAVLRVRDTGPGVPADRRELIF 483


>gi|323700432|ref|ZP_08112344.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460364|gb|EGB16229.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 570

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA---ESSRVETVIAGGGKSFFQ-ITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA       ++      G +    ++D G G+    +        T+K
Sbjct: 462 LVNNAIDAMDPGGGNLDISTRQEGDTVLTLVSDTGSGIPEANLSRIFDPFFTTK 515


>gi|304439016|ref|ZP_07398936.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372505|gb|EFM26091.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 593

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
            ++      G S    + DNG G+  E++    +R  
Sbjct: 506 EIKVTAKSEGASVEIIVEDNGIGIQREDLNKIFERFY 542


>gi|302038751|ref|YP_003799073.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606815|emb|CBK43148.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 924

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 18  EIIERPSI----AIKELIENSLDAES--SRVETVI-AGGGKSFFQITDNGFGMTSEEIPM 70
           ++++ P       +  L++N++DA    S V   +    G+  + +TD G G+ ++ +P 
Sbjct: 781 QVVDAPRSDLFQVLLNLVQNAIDASPADSEVGLSVAERDGQLRWSVTDRGTGIATDILPR 840

Query: 71  AVQRHCTSK 79
             +   T+K
Sbjct: 841 IFEPFFTTK 849


>gi|296132318|ref|YP_003639565.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296030896|gb|ADG81664.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 458

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA-----ESSRVETVIAGGGKSFF-QITDN 59
           L +  IN I    ++         LIEN   A      + R+   +   G     +I DN
Sbjct: 338 LPKLKINVIRMSRVLIN-------LIENVFAATTGVKNA-RIIIKVYKEGDWVIFEIIDN 389

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+  E++        ++K
Sbjct: 390 GRGIAKEDLEKVWSWGYSTK 409


>gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
 gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
          Length = 1227

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 41  RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +   +    G +  ++TD G G+  EE+P   +R  
Sbjct: 484 EIRVRVRADDGAAVLEVTDTGVGIAPEELPQVFERFH 520


>gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
 gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
          Length = 1227

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 41  RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +   +    G +  ++TD G G+  EE+P   +R  
Sbjct: 484 EIRVRVRADDGAAVLEVTDTGVGIAPEELPQVFERFH 520


>gi|229588651|ref|YP_002870770.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360517|emb|CAY47374.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 459

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 14/71 (19%)

Query: 20  IERPSI----AIKELIENSLDAES-----SRVETV--IAGGGKSFFQITDNGFGMTSEEI 68
           IE  +      +  L+ N+  A++       +     + G      ++ DNG G+T E +
Sbjct: 345 IECLASQLNQVVMNLVINA--AQAMGPERGTITISNGVEGENIWL-EVADNGCGITPETV 401

Query: 69  PMAVQRHCTSK 79
                   T+K
Sbjct: 402 QKIFDPFFTTK 412


>gi|257789784|ref|YP_003180390.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
 gi|317489247|ref|ZP_07947764.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
 gi|325832276|ref|ZP_08165275.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
 gi|257473681|gb|ACV54001.1| DNA gyrase, B subunit [Eggerthella lenta DSM 2243]
 gi|316911648|gb|EFV33240.1| DNA gyrase, subunit B [Eggerthella sp. 1_3_56FAA]
 gi|325486112|gb|EGC88566.1| DNA gyrase, B subunit [Eggerthella sp. HGA1]
          Length = 648

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 83/256 (32%), Gaps = 42/256 (16%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM---------AVQ 73
           + E+++N++D   A     ++  I     +   + DNG G+  ++ P             
Sbjct: 42  VYEVVDNAVDEALAGYCDEIKVWIHQD--NSISVDDNGRGIPIDKHPKEKIPTVEVVLTI 99

Query: 74  RHCTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNN--TGAQIAISG 125
            H   K   +   + + G  G       AL S      + +  R        G     + 
Sbjct: 100 LHAGGKFGGEGYKV-SGGLHGVGVSVVNALSS-----RVEVQVRKEGKEYFIGFDHGKTS 153

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF- 184
           EK+  V P     GT V         P    F ++   + + + +  R MA     +   
Sbjct: 154 EKLREVGPTKRGNGTTVSF------WPDPEIFTETTVYDFDTLANRFREMAFLNKGLKIV 207

Query: 185 ---TFSTIKSNRYKMNFQSTNGNFPERISQVI-GEDFINNAVELNEKSNEITLQGYTGIP 240
                 T    + +       G   + +  +  G++ +N  +    ++++ T++    + 
Sbjct: 208 LYDERVTDADGKPRTEVFQYAGGIVDFVKFLNEGKETLNKPIYFEAENDDGTVE--VAMQ 265

Query: 241 TFNRGNANQFYVFING 256
                + N    F N 
Sbjct: 266 WSTSYSTNSVMAFANN 281


>gi|254418394|ref|ZP_05032118.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
 gi|196184571|gb|EDX79547.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Brevundimonas sp. BAL3]
          Length = 444

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 30  LIENSLDAESSR----VET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA + R    V      +   G     + D+G G+  +++    Q   T+K
Sbjct: 342 LVRNAVDAVAGRELGLVRITGRSLGNQGYEII-VEDDGPGIPEDQMDRIFQPMTTTK 397


>gi|160901666|ref|YP_001567247.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95]
 gi|160359310|gb|ABX30924.1| DNA topoisomerase (ATP-hydrolyzing) [Petrotoga mobilis SJ95]
          Length = 641

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 23 PSIAIKELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           +  + E+I+N++D         +   +        ++ DNG G+  +
Sbjct: 36 LNHMVYEIIDNAIDEHVNGFCDTIRVTLNED--DSIEVEDNGRGIPVD 81


>gi|13471092|ref|NP_102661.1| sensor/response regulator hybrid [Mesorhizobium loti MAFF303099]
 gi|14021836|dbj|BAB48447.1| probable sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
          Length = 303

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA--ESSRVETVIAG---GGKSFF--QITDNGFGMTSEEIPMAVQRH 75
              A+  L+ N+ DA      +   +A    G       ++ DNG GM+ E +  A +  
Sbjct: 188 LQNAVLNLVFNARDAMPNGGVISISVAEVVVGPAHQIEARVKDNGVGMSPETVVRAFEPF 247

Query: 76  CTSK 79
            T+K
Sbjct: 248 FTTK 251


>gi|91975660|ref|YP_568319.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682116|gb|ABE38418.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
          Length = 451

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 25  IAIKELIENSLDA--ESS--RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L++N++DA    S  R++      G      + DNG G+    I    +   T+K
Sbjct: 349 QIVVNLVDNAIDAVRGQSEPRIDISARRQGCDVVIAVADNGPGLADGLIDKIFEPFFTTK 408


>gi|332829689|gb|EGK02335.1| hypothetical protein HMPREF9455_01605 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1351

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 30   LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            L+ N+L    D  S  +       G   F I D G G+  E++P    R  
Sbjct: 959  LLFNALKYTPDGNSIFLSIKQKNDGSVLFSIRDTGCGIAPEDLPHIFDRFY 1009


>gi|325276364|ref|ZP_08142141.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324098515|gb|EGB96584.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 26/75 (34%)

Query: 31  IENSL--------DAESSR---VET-----VIAGG-GKS---------FFQITDNGFGMT 64
           +ENSL        DA + +   +        +  G G              +TDNG GM 
Sbjct: 396 VENSLLNLCINARDALAQKPGTITIATANHTLEAGPGLDAELQPGEYLTISVTDNGMGMC 455

Query: 65  SEEIPMAVQRHCTSK 79
           ++ +  A +   T+K
Sbjct: 456 ADTLAKACEPFFTTK 470


>gi|303239414|ref|ZP_07325941.1| signal transduction histidine kinase, LytS [Acetivibrio
           cellulolyticus CD2]
 gi|302592977|gb|EFL62698.1| signal transduction histidine kinase, LytS [Acetivibrio
           cellulolyticus CD2]
          Length = 599

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 11/50 (22%)

Query: 30  LIENSL-------DAESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPM 70
           L+EN++       D   + V   +          ++ D+G GM+SE++  
Sbjct: 500 LVENAIRHGIRKRDGGGT-VAIRVKNF-LDSFMIEVEDDGVGMSSEQLEK 547


>gi|301320449|gb|ADK69092.1| DNA gyrase, B subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
           E+++NS+D   A  +  +   I    ++   + DNG G+            + +   + H
Sbjct: 41  EILDNSIDEAMAGYADLINVTITK--ENEIIVQDNGRGIPVGINSDTKKSALSLVFTQLH 98

Query: 76  CTSKISDDFSNIH 88
              K   +   I 
Sbjct: 99  AGGKFDSESYKIS 111


>gi|256370765|ref|YP_003108590.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM]
 gi|256009557|gb|ACU52917.1| DNA gyrase B subunit [Candidatus Sulcia muelleri SMDSEM]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   +   +++          +  + DNG G+  +
Sbjct: 40 EVIDNSIDEYLSGYCTKIRITFHKN--EYITVLDNGRGIPVD 79


>gi|261821967|ref|YP_003260073.1| nitrate/nitrite sensor protein NarQ [Pectobacterium wasabiae
           WPP163]
 gi|261605980|gb|ACX88466.1| integral membrane sensor signal transduction histidine kinase
           [Pectobacterium wasabiae WPP163]
          Length = 572

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 15  AAGEIIERPSIAIKELIENSLD-AESSRVETV--IAGGGKSFFQITDNGFGMTSEE 67
           A+ ++       I+E + N++  A+++ +     +   G     I D+G G+ ++E
Sbjct: 463 ASQQV--HLLQIIREAVLNAIKHAQATTITVNCCMQPDGSHCVDIRDDGCGIANQE 516


>gi|239980657|ref|ZP_04703181.1| peptidase C14 caspase catalytic subunit p20 [Streptomyces albus
           J1074]
 gi|291452517|ref|ZP_06591907.1| peptidase C14 caspase catalytic subunit [Streptomyces albus J1074]
 gi|291355466|gb|EFE82368.1| peptidase C14 caspase catalytic subunit [Streptomyces albus J1074]
          Length = 1698

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 21/73 (28%)

Query: 23  PSIAIKELIENSLDAE--------------------SSRVETVIAGGGKSF-FQITDNGF 61
           P +A++EL +N++DA                     + R+   +    +    +  DNG 
Sbjct: 652 PHLALRELYQNAMDACRYREMRSRYLRGVGREQGDWAGRIRIEMGEDSRGLYIECVDNGV 711

Query: 62  GMTSEEIPMAVQR 74
           GMT++++     R
Sbjct: 712 GMTADQLKSTFTR 724


>gi|254522716|ref|ZP_05134771.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14]
 gi|219720307|gb|EED38832.1| DNA gyrase, B subunit [Stenotrophomonas sp. SKA14]
          Length = 819

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A  +  V   I   G     ++DNG G+ 
Sbjct: 51 EVVDNSIDEALAGHADHVAVTIHTDG--SVSVSDNGRGIP 88


>gi|213582583|ref|ZP_03364409.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 483

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+L+A S      +   +    G    +++D+G G+  E I    ++  +SK
Sbjct: 428 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSK 482


>gi|170719924|ref|YP_001747612.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
 gi|169757927|gb|ACA71243.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
          Length = 991

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R +  +  L+ N+ DA     + RV T ++        + D G G+    +    +   
Sbjct: 869 QRLAQVLINLLSNARDASPPGSAVRVRTEVSEHTVDLI-VEDEGSGIPKNIMDRLFEPFF 927

Query: 77  TSK 79
           T+K
Sbjct: 928 TTK 930


>gi|42560566|ref|NP_975017.1| DNA gyrase subunit B [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492062|emb|CAE76659.1| DNA Gyrase Subunit B [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 15/73 (20%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT--------SEEIPMAVQR-H 75
           E+++NS+D   A  +  +   I    ++   + DNG G+            + +   + H
Sbjct: 41  EILDNSIDEAMAGYADLINVTITK--ENEIIVQDNGRGIPVGINSDTKKSALSLVFTQLH 98

Query: 76  CTSKISDDFSNIH 88
              K   +   I 
Sbjct: 99  AGGKFDSESYKIS 111


>gi|154247446|ref|YP_001418404.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154161531|gb|ABS68747.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 23  PSIAIKELIENSL------DAESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
            + A+  LI+N++      D  S  R+   +   GG++   + D G G+   +    V+R
Sbjct: 355 LAQAVSNLIDNAIKYGRPVD-GSRGRIAVTLARQGGEAVLAVADTGPGIPEADRERVVER 413

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
                         T    G  L  +GAV+ L
Sbjct: 414 FV------RLEASRTRPGSGLGLALVGAVARL 439


>gi|332188910|ref|ZP_08390613.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17]
 gi|332011050|gb|EGI53152.1| DNA topoisomerase IV, B subunit [Sphingomonas sp. S17]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++R+E  +  G  +   I DNG G+  +
Sbjct: 52 EVLDNAMDEAVAGHANRIEVKLEPG--NRLTIVDNGRGIPVD 91


>gi|329936804|ref|ZP_08286483.1| putative sensor-like histidine kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329303729|gb|EGG47613.1| putative sensor-like histidine kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 1377

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 617 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 676

Query: 72  VQRHC 76
            +R  
Sbjct: 677 NERLA 681


>gi|302558191|ref|ZP_07310533.1| periplasmic sensor signal transduction histidine kinase
           [Streptomyces griseoflavus Tu4000]
 gi|302475809|gb|EFL38902.1| periplasmic sensor signal transduction histidine kinase
           [Streptomyces griseoflavus Tu4000]
          Length = 805

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 661 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 720

Query: 72  VQRHC 76
            +R  
Sbjct: 721 NERLA 725


>gi|302554377|ref|ZP_07306719.1| sensor histidine kinase [Streptomyces viridochromogenes DSM 40736]
 gi|302471995|gb|EFL35088.1| sensor histidine kinase [Streptomyces viridochromogenes DSM 40736]
          Length = 945

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 719 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 778

Query: 72  VQRHC 76
            +R  
Sbjct: 779 NERLA 783


>gi|301062783|ref|ZP_07203388.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300443114|gb|EFK07274.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 376

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 26  AIKELIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           AI E++ N+L     D  S R+       G    +I DNG G++ +++P       T+K
Sbjct: 273 AIYEVLLNALEFLDGDEGSVRIFLSEEQNGL-VMEIVDNGIGISGKDLPYVFDPFFTTK 330


>gi|297202594|ref|ZP_06919991.1| sensor histidine kinase [Streptomyces sviceus ATCC 29083]
 gi|297148148|gb|EDY53910.2| sensor histidine kinase [Streptomyces sviceus ATCC 29083]
          Length = 851

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 686 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 745

Query: 72  VQRHC 76
            +R  
Sbjct: 746 NERLA 750


>gi|294631591|ref|ZP_06710151.1| periplasmic sensor signal transduction histidine kinase
           [Streptomyces sp. e14]
 gi|292834924|gb|EFF93273.1| periplasmic sensor signal transduction histidine kinase
           [Streptomyces sp. e14]
          Length = 815

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 668 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 727

Query: 72  VQRHC 76
            +R  
Sbjct: 728 NERLA 732


>gi|291437058|ref|ZP_06576448.1| LOW QUALITY PROTEIN: membrane protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291339953|gb|EFE66909.1| LOW QUALITY PROTEIN: membrane protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 722

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 609 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 668

Query: 72  VQRHC 76
            +R  
Sbjct: 669 NERLA 673


>gi|289768894|ref|ZP_06528272.1| membrane protein [Streptomyces lividans TK24]
 gi|289699093|gb|EFD66522.1| membrane protein [Streptomyces lividans TK24]
          Length = 833

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 684 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 743

Query: 72  VQRHC 76
            +R  
Sbjct: 744 NERLA 748


>gi|315502965|ref|YP_004081852.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409584|gb|ADU07701.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 704

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS D   A  +++V+ ++   G    Q+ D+G G+ ++
Sbjct: 62  VNEILDNSTDEGVAGHATKVDVILHADG--SVQVDDDGRGIPTD 103


>gi|281424898|ref|ZP_06255811.1| putative DNA topoisomerase IV, B subunit [Prevotella oris F0302]
 gi|281401016|gb|EFB31847.1| putative DNA topoisomerase IV, B subunit [Prevotella oris F0302]
          Length = 660

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 64/246 (26%), Gaps = 35/246 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 60  LKEVIDNSIDEFKMKAG-DRIEIEVENN--LRVSVRDYGRGIPQGKLVEAVSMLNTGGKY 116

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S               +K       
Sbjct: 117 DSKAFK-KSVGLNGVGIKAVNALSS-----HFEVKSFRDGKVRELTFEKGVKKSDKTLDT 170

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
               GT +                K      +++  ++R        ++          +
Sbjct: 171 NDENGTYIYFE-------PDNTLFKDYSFHNDIVETMLRNYTYLNSGLTIMYNGRRIKSR 223

Query: 191 SNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQF 250
           +    +   +   +    I  +IGED        N+   E                    
Sbjct: 224 NGLADLLNDNMTNDGLYPIVHIIGEDIEIAFTHTNQYGEEYHS---FVNGQHTTQGGTHQ 280

Query: 251 YVFING 256
             F   
Sbjct: 281 SAFKEH 286


>gi|302866555|ref|YP_003835192.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569414|gb|ADL45616.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 704

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS D   A  +++V+ ++   G    Q+ D+G G+ ++
Sbjct: 62  VNEILDNSTDEGVAGHATKVDVILHADG--SVQVDDDGRGIPTD 103


>gi|290957150|ref|YP_003488332.1| nitrite/nitrate sensor kinase [Streptomyces scabiei 87.22]
 gi|260646676|emb|CBG69773.1| putative nitrite/nitrate sensor kinase [Streptomyces scabiei 87.22]
          Length = 1304

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 597 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 656

Query: 72  VQRHC 76
            +R  
Sbjct: 657 NERLA 661


>gi|256785002|ref|ZP_05523433.1| membrane protein SC1C225c [Streptomyces lividans TK24]
          Length = 748

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 599 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 658

Query: 72  VQRHC 76
            +R  
Sbjct: 659 NERLA 663


>gi|239928734|ref|ZP_04685687.1| membrane protein SC1C225c [Streptomyces ghanaensis ATCC 14672]
          Length = 981

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 577 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 636

Query: 72  VQRHC 76
            +R  
Sbjct: 637 NERLA 641


>gi|256419449|ref|YP_003120102.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588]
 gi|256034357|gb|ACU57901.1| DNA gyrase, B subunit [Chitinophaga pinensis DSM 2588]
          Length = 659

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   I     +   +TD+G G+ 
Sbjct: 50 VYEVVDNSIDEALAGYCKNISVTICED--NSILVTDDGRGIP 89


>gi|167758625|ref|ZP_02430752.1| hypothetical protein CLOSCI_00965 [Clostridium scindens ATCC 35704]
 gi|167663821|gb|EDS07951.1| hypothetical protein CLOSCI_00965 [Clostridium scindens ATCC 35704]
          Length = 497

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 14  IAAGEIIERPSIAIKELIENSL---DAESSRVETVIAGGGKSFFQIT--DNGFGMTSEEI 68
           IA  E I+R    I  ++ NSL   D    ++   +   G  F Q+   DNG G+ ++++
Sbjct: 378 IADAEQIKR---VIHNIVNNSLKYMDKPKGKINLRVKDVG-DFIQVELEDNGKGIAAKDL 433

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
           P    R        D S   + G  G  L SI
Sbjct: 434 PNIFDRFY----RTDASRNSSKGGSGIGL-SI 460


>gi|153828647|ref|ZP_01981314.1| flagellar regulatory protein B [Vibrio cholerae 623-39]
 gi|148875918|gb|EDL74053.1| flagellar regulatory protein B [Vibrio cholerae 623-39]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 29/129 (22%)

Query: 12  NQIAAGEIIER-----------PSIAIKELIENSLD-AE-SSRVETVIAG-GGKSFFQIT 57
           NQI  G+ +E             + A+  L+ N+L  A   S+++       G+    + 
Sbjct: 217 NQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQ 276

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-----HLTLMSRP 112
           DNG G+          +H   KI + F    + G  G  L  +  V       L L+S+ 
Sbjct: 277 DNGPGVPES------LQH---KIMEPFFTTRSQG-TGLGLAVVQMVCRAHGGRLELISKE 326

Query: 113 PQNNTGAQI 121
            +       
Sbjct: 327 GEGACFTMC 335


>gi|29829236|ref|NP_823870.1| sensor-like histidine kinase [Streptomyces avermitilis MA-4680]
 gi|29606343|dbj|BAC70405.1| putative sensor-like histidine kinase [Streptomyces avermitilis
           MA-4680]
          Length = 1278

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 591 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 650

Query: 72  VQRHC 76
            +R  
Sbjct: 651 NERLA 655


>gi|72052805|ref|XP_798889.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115677661|ref|XP_001203772.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 566

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 25  IAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
             +KEL++N+ DA ++++  V       G         G GM + + P     H +S   
Sbjct: 500 TILKELLQNADDAGATQIHFVYDPRSHNGTELL-----GDGMKALQGPALCVFHNSSFTD 554

Query: 82  DDFSNIH 88
           +D   I 
Sbjct: 555 EDIRGIQ 561


>gi|71281227|ref|YP_266786.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H]
 gi|71146967|gb|AAZ27440.1| DNA gyrase, B subunit [Colwellia psychrerythraea 34H]
          Length = 814

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I   G     + D+G G+ +E
Sbjct: 44 EVLDNSIDEALAGHCTDIIVTIHLDG--SVSVQDDGRGIPTE 83


>gi|23978239|dbj|BAC21114.1| DNA gyrase B subunit [Phormidium sp. IAM M-99]
          Length = 391

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I   G     +TD+G G+ 
Sbjct: 10 VYEVVDNSVDEALAGYCKAIDISINADG--SVTVTDDGRGIP 49


>gi|21223899|ref|NP_629678.1| membrane protein SC1C225c [Streptomyces coelicolor A3(2)]
 gi|3355692|emb|CAA19992.1| putative membrane protein SC1C2.25c [Streptomyces coelicolor A3(2)]
          Length = 1329

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 599 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLAAI 658

Query: 72  VQRHC 76
            +R  
Sbjct: 659 NERLA 663


>gi|19909553|dbj|BAB86972.1| DNA gyrase subunit B [Leptolyngbya boryana IAM M-101]
          Length = 546

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I   G     +TD+G G+ 
Sbjct: 6  VYEVVDNSVDEALAGYCKAIDISINADG--SVTVTDDGRGIP 45


>gi|15642135|ref|NP_231767.1| sensory box sensor histidine kinase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586836|ref|ZP_01676618.1| flagellar regulatory protein B [Vibrio cholerae 2740-80]
 gi|121727157|ref|ZP_01680324.1| flagellar regulatory protein B [Vibrio cholerae V52]
 gi|147675650|ref|YP_001217659.1| flagellar regulatory protein B [Vibrio cholerae O395]
 gi|153213249|ref|ZP_01948661.1| flagellar regulatory protein B [Vibrio cholerae 1587]
 gi|153801635|ref|ZP_01956221.1| flagellar regulatory protein B [Vibrio cholerae MZO-3]
 gi|153818969|ref|ZP_01971636.1| flagellar regulatory protein B [Vibrio cholerae NCTC 8457]
 gi|153822619|ref|ZP_01975286.1| flagellar regulatory protein B [Vibrio cholerae B33]
 gi|153825599|ref|ZP_01978266.1| flagellar regulatory protein B [Vibrio cholerae MZO-2]
 gi|227082261|ref|YP_002810812.1| flagellar regulatory protein B [Vibrio cholerae M66-2]
 gi|229507779|ref|ZP_04397284.1| flagellar sensor histidine kinase FleS [Vibrio cholerae BX 330286]
 gi|229511984|ref|ZP_04401463.1| flagellar sensor histidine kinase FleS [Vibrio cholerae B33]
 gi|229513787|ref|ZP_04403249.1| flagellar sensor histidine kinase FleS [Vibrio cholerae TMA 21]
 gi|229519120|ref|ZP_04408563.1| flagellar sensor histidine kinase FleS [Vibrio cholerae RC9]
 gi|229522089|ref|ZP_04411506.1| flagellar sensor histidine kinase FleS [Vibrio cholerae TM
           11079-80]
 gi|229528852|ref|ZP_04418242.1| flagellar sensor histidine kinase FleS [Vibrio cholerae 12129(1)]
 gi|229607324|ref|YP_002877972.1| flagellar sensor histidine kinase FleS [Vibrio cholerae MJ-1236]
 gi|254226367|ref|ZP_04919956.1| flagellar regulatory protein B [Vibrio cholerae V51]
 gi|254291373|ref|ZP_04962166.1| flagellar regulatory protein B [Vibrio cholerae AM-19226]
 gi|254849222|ref|ZP_05238572.1| flagellar regulatory protein B [Vibrio cholerae MO10]
 gi|255745126|ref|ZP_05419075.1| flagellar sensor histidine kinase FleS [Vibrio cholera CIRS 101]
 gi|262153485|ref|ZP_06028615.1| flagellar sensor histidine kinase FleS [Vibrio cholerae INDRE 91/1]
 gi|262167495|ref|ZP_06035201.1| flagellar sensor histidine kinase FleS [Vibrio cholerae RC27]
 gi|262189705|ref|ZP_06048071.1| flagellar sensor histidine kinase FleS [Vibrio cholerae CT 5369-93]
 gi|297582034|ref|ZP_06943953.1| two-component sensor kinase [Vibrio cholerae RC385]
 gi|298497842|ref|ZP_07007649.1| flagellar regulatory protein B [Vibrio cholerae MAK 757]
 gi|2338728|gb|AAC46366.1| two-component sensor kinase protein [Vibrio cholerae]
 gi|9656687|gb|AAF95281.1| sensory box sensor histidine kinase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549003|gb|EAX59042.1| flagellar regulatory protein B [Vibrio cholerae 2740-80]
 gi|121630402|gb|EAX62795.1| flagellar regulatory protein B [Vibrio cholerae V52]
 gi|124116049|gb|EAY34869.1| flagellar regulatory protein B [Vibrio cholerae 1587]
 gi|124122812|gb|EAY41555.1| flagellar regulatory protein B [Vibrio cholerae MZO-3]
 gi|125621117|gb|EAZ49462.1| flagellar regulatory protein B [Vibrio cholerae V51]
 gi|126510464|gb|EAZ73058.1| flagellar regulatory protein B [Vibrio cholerae NCTC 8457]
 gi|126519867|gb|EAZ77090.1| flagellar regulatory protein B [Vibrio cholerae B33]
 gi|146317533|gb|ABQ22072.1| flagellar regulatory protein B [Vibrio cholerae O395]
 gi|149740750|gb|EDM54849.1| flagellar regulatory protein B [Vibrio cholerae MZO-2]
 gi|150422703|gb|EDN14657.1| flagellar regulatory protein B [Vibrio cholerae AM-19226]
 gi|227010149|gb|ACP06361.1| flagellar regulatory protein B [Vibrio cholerae M66-2]
 gi|227014032|gb|ACP10242.1| flagellar regulatory protein B [Vibrio cholerae O395]
 gi|229332626|gb|EEN98112.1| flagellar sensor histidine kinase FleS [Vibrio cholerae 12129(1)]
 gi|229341014|gb|EEO06019.1| flagellar sensor histidine kinase FleS [Vibrio cholerae TM
           11079-80]
 gi|229343809|gb|EEO08784.1| flagellar sensor histidine kinase FleS [Vibrio cholerae RC9]
 gi|229348968|gb|EEO13925.1| flagellar sensor histidine kinase FleS [Vibrio cholerae TMA 21]
 gi|229351949|gb|EEO16890.1| flagellar sensor histidine kinase FleS [Vibrio cholerae B33]
 gi|229355284|gb|EEO20205.1| flagellar sensor histidine kinase FleS [Vibrio cholerae BX 330286]
 gi|229369979|gb|ACQ60402.1| flagellar sensor histidine kinase FleS [Vibrio cholerae MJ-1236]
 gi|254844927|gb|EET23341.1| flagellar regulatory protein B [Vibrio cholerae MO10]
 gi|255736956|gb|EET92352.1| flagellar sensor histidine kinase FleS [Vibrio cholera CIRS 101]
 gi|262024067|gb|EEY42762.1| flagellar sensor histidine kinase FleS [Vibrio cholerae RC27]
 gi|262030722|gb|EEY49356.1| flagellar sensor histidine kinase FleS [Vibrio cholerae INDRE 91/1]
 gi|262034409|gb|EEY52783.1| flagellar sensor histidine kinase FleS [Vibrio cholerae CT 5369-93]
 gi|297533729|gb|EFH72571.1| two-component sensor kinase [Vibrio cholerae RC385]
 gi|297542175|gb|EFH78225.1| flagellar regulatory protein B [Vibrio cholerae MAK 757]
 gi|327484665|gb|AEA79072.1| Flagellar sensor histidine kinase FleS [Vibrio cholerae LMA3894-4]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 29/129 (22%)

Query: 12  NQIAAGEIIER-----------PSIAIKELIENSLD-AE-SSRVETVIAG-GGKSFFQIT 57
           NQI  G+ +E             + A+  L+ N+L  A   S+++       G+    + 
Sbjct: 217 NQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIDVFFRPVNGELKISVQ 276

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-----HLTLMSRP 112
           DNG G+          +H   KI + F    + G  G  L  +  V       L L+S+ 
Sbjct: 277 DNGPGVPES------LQH---KIMEPFFTTRSQG-TGLGLAVVQMVCRAHGGRLELISKE 326

Query: 113 PQNNTGAQI 121
            +       
Sbjct: 327 GEGACFTMC 335


>gi|326329545|ref|ZP_08195867.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1]
 gi|325952541|gb|EGD44559.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1]
          Length = 367

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
           L+EN++     DA++  +    A  G     ++ D+G G   E++  A+     S
Sbjct: 268 LVENAVRHGLADAQTGHISIRAADSGTECVIEVEDDGAGEDPEKVRNALAGGADS 322


>gi|322805285|emb|CBZ02849.1| sensor histidine kinase [Clostridium botulinum H04402 065]
          Length = 473

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + NS D    +++  +    K    + DNG G+  EE+     R+ 
Sbjct: 385 VHNSED---VKIDVTLKKQDKISIIVEDNGRGIKGEELNRIFDRYY 427


>gi|303326105|ref|ZP_07356548.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864021|gb|EFL86952.1| DNA gyrase, B subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 801

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   SR+  ++     +   + D+G G+  +
Sbjct: 45 VYEVVDNSIDEAMAGYCSRITVILHAD--NSVTVRDDGRGIPVD 86


>gi|298372284|ref|ZP_06982274.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275188|gb|EFI16739.1| DNA gyrase, B subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   + D+G G+  +
Sbjct: 48 VYEVVDNSIDEALAGYCKNISVTINKD--NSVTVKDDGRGIPVD 89


>gi|152995591|ref|YP_001340426.1| two-component sensor protein [Marinomonas sp. MWYL1]
 gi|150836515|gb|ABR70491.1| integral membrane sensor signal transduction histidine kinase
           [Marinomonas sp. MWYL1]
          Length = 462

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 6/53 (11%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
            A++ ++ N++     +++  +     +   ++ D+G G+  +E     +   
Sbjct: 357 SALENIVRNAIHYGKKQIQVSLEAHSDTLSIRVEDDGDGVPEDEFDSIFRPFY 409


>gi|118602063|ref|YP_903278.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm
          (Calyptogena magnifica)]
 gi|118567002|gb|ABL01807.1| DNA gyrase subunit B [Candidatus Ruthia magnifica str. Cm
          (Calyptogena magnifica)]
          Length = 802

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   S++   +         + DNG G+  +
Sbjct: 46 EVVDNAIDEALAGFCSKINITLHED--LSISVNDNGRGIPVD 85


>gi|115720165|ref|XP_788327.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115945095|ref|XP_001177188.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 2012

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 26  AIKELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           AI ELI+NSL A         +E  +     G KS   + DNG GMT+ E+
Sbjct: 132 AIAELIDNSLAATVDNVGPRNIEIRLYLDETGDKSMVCVLDNGKGMTTREL 182


>gi|30022741|ref|NP_834372.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229129951|ref|ZP_04258917.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
 gi|29898300|gb|AAP11573.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228653642|gb|EEL09514.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++        ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|68536517|ref|YP_251222.1| two-component system sensor kinase TcsS4 [Corynebacterium jeikeium
           K411]
 gi|260577650|ref|ZP_05845586.1| two component system sensor kinase TcsS4 [Corynebacterium jeikeium
           ATCC 43734]
 gi|68264116|emb|CAI37604.1| two-component system sensor kinase TcsS4 [Corynebacterium jeikeium
           K411]
 gi|258604196|gb|EEW17437.1| two component system sensor kinase TcsS4 [Corynebacterium jeikeium
           ATCC 43734]
          Length = 375

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +  Q+ D+G G+   ++    +R  
Sbjct: 256 QRFGQVLSNLLSNALRHTPAGGQVRISVHRQGASTALIQVADDGEGIPPGQLGHIFERFY 315


>gi|323493784|ref|ZP_08098902.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546]
 gi|323311918|gb|EGA65064.1| DNA gyrase subunit B [Vibrio brasiliensis LMG 20546]
          Length = 805

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 76/246 (30%), Gaps = 22/246 (8%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S    ++     +   Q    GE  + +  + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVTLTIHRGGHIHTQTYHHGEPQAPLAVIG 158

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
               T  ++R  +           + +   +++   +R ++     VS      +    K
Sbjct: 159 DTDKTGTQIR-FW----PSAETFSNTEFHYDILAKRLRELSFLNSGVSIKL-IDEREEDK 212

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
            +     G     +  +            +                +N G     Y F N
Sbjct: 213 SDHFMFEGGIQAFVDHLNTNKTPIIEKIFHFDFEREDGIAVEVAMQWNDGFQENIYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|326775003|ref|ZP_08234268.1| ATP-binding region ATPase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326655336|gb|EGE40182.1| ATP-binding region ATPase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 647

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 49/197 (24%)

Query: 19  IIERPSI----AIKELIENSLDA-----------------ESS-RVETVIAGGGKSFFQI 56
           +I          ++ELI N+ DA                  +   +   +    ++   +
Sbjct: 30  VIHSIYSNKDIFLRELISNASDALDKLRLESLTDSSLETESADPHIALEVDPEARTL-TV 88

Query: 57  TDNGFGMTSEEIPMAVQRHCTS-------KISDDFSN------IHTF--GFRGEALPSIG 101
            DNG GMT E++   +     S       KI +          I  F  GF      S  
Sbjct: 89  RDNGIGMTREDLVELIGTIAKSGTAGLLEKIKESKDAATAENLIGQFGVGF-----YSAF 143

Query: 102 AVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-NPGTIVEVRDLFFTIPARLNFLK 159
            V+  +TL++R    +TG +    GE   +++       GT V         P      +
Sbjct: 144 MVADQVTLLTRRAGTDTGTRWESDGEGTYAIQSEDGLPVGTSVT----LHLKPVDSEDGR 199

Query: 160 SEQVETNLITDVIRRMA 176
           ++ +  + I  ++++ +
Sbjct: 200 ADYLSESKIRQIVKQYS 216


>gi|291286369|ref|YP_003503185.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883529|gb|ADD67229.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 612

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 19/61 (31%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQ-----------ITDNGFGMTSEEIPMAVQRHCTS 78
           LI+N++DA        I   G    +           I+D G G+  E I        TS
Sbjct: 511 LIQNAMDA--------IESDGLITIELINNEDHVMLIISDTGSGIDDENIHKIFDPFHTS 562

Query: 79  K 79
           K
Sbjct: 563 K 563


>gi|283778283|ref|YP_003369038.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283436736|gb|ADB15178.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 543

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 30  LIEN---SLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           LI N   SLD     V   +   G S    + DNG GM+ E +    +   T
Sbjct: 430 LITNGLDSLDPG-GIVHVTLKKSGNSAEILVRDNGCGMSPEVLEHLFEPFFT 480


>gi|269960215|ref|ZP_06174590.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3]
 gi|269835022|gb|EEZ89106.1| DNA topoisomerase 4 subunit B [Vibrio harveyi 1DA3]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYP--K 181
              ++ V      N GT V              +  S       + + +R  A+  P  +
Sbjct: 147 VSDLTVVGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 182 VSFTFSTIKSNRYKMNFQSTNGNFPERI 209
           ++FT      +              E +
Sbjct: 200 ITFTDKVNNKDYKWFYEDGLKDYLAEGV 227


>gi|239982522|ref|ZP_04705046.1| sensor-like histidine kinase [Streptomyces albus J1074]
 gi|291454364|ref|ZP_06593754.1| sensor-like histidine kinase [Streptomyces albus J1074]
 gi|291357313|gb|EFE84215.1| sensor-like histidine kinase [Streptomyces albus J1074]
          Length = 1243

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 16  AGEIIERPSIAIKELIENSLDAESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMA 71
           AG ++      + EL+EN+    S + +  + G     G+   +I D G G++ E++   
Sbjct: 599 AGRVVNDLVHLLAELLENATSFSSPQTKVKVTGHALPDGRVLIEIHDTGIGLSPEDLSAI 658

Query: 72  VQRHC 76
            +R  
Sbjct: 659 NERLA 663


>gi|271963357|ref|YP_003337553.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270506532|gb|ACZ84810.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 1049

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 17  GEIIERPSIAIKELIENSLDAES-----SRVET---VIAGGGKSFFQITDNGFGMTSEEI 68
           G  +      I EL+EN++   S     ++V      I GGG     +TD G GMT EE+
Sbjct: 574 GTSVNDVVHLIAELVENAI---SFSPRETKVVVSSNRIDGGGV-MVSVTDIGIGMTPEEL 629

Query: 69  PMAVQRHC 76
             A  R  
Sbjct: 630 GQANWRLA 637


>gi|218752416|ref|ZP_03531212.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis GM 1503]
 gi|289760885|ref|ZP_06520263.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis GM 1503]
 gi|289708391|gb|EFD72407.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis GM 1503]
          Length = 485

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSL-------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           R    ++ L+ N++       D     V   +   G     ++ D+G GM+ E+     +
Sbjct: 362 RLRQVLRNLVANAIQHTPESAD-----VTVRVGTEGDDGILEVADDGPGMSQEDALRVFE 416

Query: 74  RHC 76
           R  
Sbjct: 417 RFY 419


>gi|182434473|ref|YP_001822192.1| heat shock protein 90 [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178462989|dbj|BAG17509.1| putative Hsp90-family heat shock protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 638

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 49/197 (24%)

Query: 19  IIERPSI----AIKELIENSLDA-----------------ESS-RVETVIAGGGKSFFQI 56
           +I          ++ELI N+ DA                  +   +   +    ++   +
Sbjct: 21  VIHSIYSNKDIFLRELISNASDALDKLRLESLTDSSLETESADPHIALEVDPEARTL-TV 79

Query: 57  TDNGFGMTSEEIPMAVQRHCTS-------KISDDFSN------IHTF--GFRGEALPSIG 101
            DNG GMT E++   +     S       KI +          I  F  GF      S  
Sbjct: 80  RDNGIGMTREDLVELIGTIAKSGTAGLLEKIKESKDAATAENLIGQFGVGF-----YSAF 134

Query: 102 AVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM-NPGTIVEVRDLFFTIPARLNFLK 159
            V+  +TL++R    +TG +    GE   +++       GT V         P      +
Sbjct: 135 MVADQVTLLTRRAGTDTGTRWESDGEGTYAIQSEDGLPVGTSVT----LHLKPVDSEDGR 190

Query: 160 SEQVETNLITDVIRRMA 176
           ++ +  + I  ++++ +
Sbjct: 191 ADYLSESKIRQIVKQYS 207


>gi|170756485|ref|YP_001780598.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169121697|gb|ACA45533.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 473

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + NS D    +++  +    K    + DNG G+  EE+     R+ 
Sbjct: 385 VHNSED---VKIDVTLKKQDKISIIVEDNGRGIKGEELNRIFDRYY 427


>gi|126730821|ref|ZP_01746630.1| sensor histidine kinase [Sagittula stellata E-37]
 gi|126708537|gb|EBA07594.1| sensor histidine kinase [Sagittula stellata E-37]
          Length = 582

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 16  AGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPM 70
           AG++  R    +  L+ N+LDA +     R+         +    + DNG G+ +  +  
Sbjct: 465 AGQV--RLEQVLVNLLMNALDAVAGQDGPRIRVERRQSETAVEIAVVDNGPGIPTSLLTR 522

Query: 71  AVQR-HCTSKISDDF 84
            V+    T K  +  
Sbjct: 523 VVEPFFSTKKTGESL 537


>gi|77457760|ref|YP_347265.1| PAS/PAC sensor Signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
 gi|12056607|gb|AAG47965.1|AF312695_5 FleS [Pseudomonas fluorescens]
 gi|77381763|gb|ABA73276.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 403

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 30  LIENSLDAESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           LIEN++ A +  V   +             ++D+G G+ +  +    +   T+K++
Sbjct: 303 LIENAIQASAGEVRLKVHCYTRDNTLRLC-VSDSGSGIDAAVLARLGEPFFTTKVT 357


>gi|118395|sp|P10047|DCTB_RHILE RecName: Full=C4-dicarboxylate transport sensor protein dctB
 gi|46179|emb|CAA77619.1| C4-dicarboxylate transport regulatory sensor protein [Rhizobium
           leguminosarum]
 gi|46182|emb|CAA29595.1| unnamed protein product [Rhizobium leguminosarum]
          Length = 622

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 17/84 (20%)

Query: 6   LSEK----IINQIAAGEIIERPSIAIKELIENSLDAES-----SRVETVIA-GGGKSFFQ 55
           L       + N+I       R    +  L++N+L+A +      RVE   +   G     
Sbjct: 506 LPPDELQVMGNRI-------RLEQVLINLLQNALEAVAPKAGEGRVEIRTSTDAGMVTVT 558

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSK 79
           + DNG G+ +E          TSK
Sbjct: 559 VADNGPGIPTEIRKGLFTPFNTSK 582


>gi|220932166|ref|YP_002509074.1| integral membrane sensor signal transduction histidine kinase
           [Halothermothrix orenii H 168]
 gi|219993476|gb|ACL70079.1| integral membrane sensor signal transduction histidine kinase
           [Halothermothrix orenii H 168]
          Length = 463

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 30  LIENSLDAESS----RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI NSL  + +    ++E  ++    ++   + DNG G+++E++P   +R  
Sbjct: 361 LINNSL--KYTPEGGKIEITLSSKKNQAIISVKDNGTGISAEDLPYIFERFY 410


>gi|88809918|ref|ZP_01125423.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
 gi|88786108|gb|EAR17270.1| DNA topoisomerase IV subunit B [Synechococcus sp. WH 7805]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++ V+   G +    TDNG G+ ++
Sbjct: 45 VYEVVDNSVDEALAGHCTEIQVVLGEDGSACI--TDNGRGIPTD 86


>gi|332531968|ref|ZP_08407852.1| putative sensor histidine kinase protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038595|gb|EGI75038.1| putative sensor histidine kinase protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 626

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 40  SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC-TSK 79
           S++   +      +  ++TDNG G+  +E+     +   +SK
Sbjct: 523 SKIRVNLESDNKLATIEVTDNGVGIPEDELEHIFTKFVQSSK 564


>gi|300854563|ref|YP_003779547.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434678|gb|ADK14445.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 470

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC----TS 78
           +V+  I    K +  I DNG G+  +++    +R+     TS
Sbjct: 389 QVDISIYEKDKIYIIINDNGKGIPKKDLNYIFERYYRGTNTS 430


>gi|228994174|ref|ZP_04154074.1| C4-dicarboxylate sensor kinase [Bacillus pseudomycoides DSM 12442]
 gi|228765626|gb|EEM14280.1| C4-dicarboxylate sensor kinase [Bacillus pseudomycoides DSM 12442]
          Length = 533

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 30  LIENSLDAES--------SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LIEN+    S         R++  I          I DNG G+  E +P   ++  T
Sbjct: 427 LIENAF--GSFEQTEVENKRIDISIEQSEDVCAILIEDNGCGIKEEHLPRVYEKGFT 481


>gi|229112136|ref|ZP_04241679.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296505137|ref|YP_003666837.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|228671459|gb|EEL26760.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296326189|gb|ADH09117.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++        ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|227540525|ref|ZP_03970574.1| possible multi-sensor signal transduction histidine kinase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239607|gb|EEI89622.1| possible multi-sensor signal transduction histidine kinase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 363

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 26  AIKELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEI 68
            I+EL+ N++  AE+S++   ++         + D+G G   +++
Sbjct: 275 IIQELVNNAIKHAEASQIIVQLSENDNRLHITVEDDGKGFDPQQL 319


>gi|171315733|ref|ZP_02904966.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MEX-5]
 gi|171099145|gb|EDT43921.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria MEX-5]
          Length = 634

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 17/83 (20%)

Query: 14  IAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI---------AGGGKSFFQI 56
           IA G  +  E       I  L+ N+LDA  ++   R+               GG+  F +
Sbjct: 499 IAPGTTVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIEAAKVDGADDADEGGRVRFTV 558

Query: 57  TDNGFGMTSEEIPMAVQRHCTSK 79
            D+G G+ ++ +P   +   T+K
Sbjct: 559 ADSGAGIAADVLPHLFEPFVTTK 581


>gi|241589844|ref|YP_002979869.1| hypothetical protein Rpic12D_4981 [Ralstonia pickettii 12D]
 gi|240868556|gb|ACS66215.1| hypothetical protein Rpic12D_4981 [Ralstonia pickettii 12D]
          Length = 542

 Score = 42.0 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 29 ELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
          ELI+NS  A++S V+  +   GK+   + D+G G+  ++     
Sbjct: 32 ELIQNSRRADASMVDIRLE--GKTLI-VFDDGQGI--QDFQKLF 70


>gi|328952219|ref|YP_004369553.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328452543|gb|AEB08372.1| DNA gyrase, B subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 803

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E     + E+++NS+D   A   ++++  I     +   + DNG G+  +
Sbjct: 43 EGLHHLVYEVVDNSIDEALAGYCNQIQVTIHSD--NSVTVEDNGRGIPVD 90


>gi|302547526|ref|ZP_07299868.1| putative membrane protein SC1C2.25c [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302465144|gb|EFL28237.1| putative membrane protein SC1C2.25c [Streptomyces himastatinicus
           ATCC 53653]
          Length = 885

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 22  RPSIAIKELIENSLDAES-----SRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
             +  I EL++N   A +     ++V         G +  ++ D G GM+  ++  A +R
Sbjct: 558 DLARIIAELLDN---ATAFSPPETQVVVSTTPRRDGSALIEVRDQGIGMSGADLAKAHRR 614

Query: 75  --HCTS 78
               TS
Sbjct: 615 LEATTS 620


>gi|229524137|ref|ZP_04413542.1| flagellar sensor histidine kinase FleS [Vibrio cholerae bv.
           albensis VL426]
 gi|229337718|gb|EEO02735.1| flagellar sensor histidine kinase FleS [Vibrio cholerae bv.
           albensis VL426]
          Length = 351

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 29/129 (22%)

Query: 12  NQIAAGEIIER-----------PSIAIKELIENSLD-AE-SSRVETVIAG-GGKSFFQIT 57
           NQI  G+ +E             + A+  L+ N+L  A   S++E       G+    + 
Sbjct: 217 NQIDYGQEVESEETMLLGNANALASALSNLVMNALQIAGKGSQIEVFFRPVNGELKISVQ 276

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-----HLTLMSRP 112
           DNG G+          +H   KI + F    + G  G  L  +  V       L L+S+ 
Sbjct: 277 DNGPGVPES------LQH---KIMEPFFTTRSQG-TGLGLAVVQMVCRAHGGRLELISKE 326

Query: 113 PQNNTGAQI 121
            +       
Sbjct: 327 GEGACFTMC 335


>gi|229048377|ref|ZP_04193945.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
 gi|229147237|ref|ZP_04275594.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228636246|gb|EEK92719.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228723102|gb|EEL74479.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
          Length = 484

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++        ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|206890289|ref|YP_002249292.1| sporulation kinase C [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742227|gb|ACI21284.1| sporulation kinase C [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 406

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 31  IENSLDA----ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+NS+DA    +   +        GK   +I D+G GM  + +  A++   T+K
Sbjct: 313 IQNSVDALTDTKDKIITIRAYKTNGKIKIEIEDSGIGMDEQTLKRALEPFFTTK 366


>gi|60459494|gb|AAX20083.1| DNA gyrase subunit B [Leptospira genomosp. 1 serovar Pingchang]
          Length = 141

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIGISILPDNI--IEVKDNGRGIPVD 69


>gi|87118787|ref|ZP_01074686.1| hypothetical protein MED121_17209 [Marinomonas sp. MED121]
 gi|86166421|gb|EAQ67687.1| hypothetical protein MED121_17209 [Marinomonas sp. MED121]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  LI N++DA SS    +++  +     + F  ++D G G+ ++++        
Sbjct: 523 RLEQVLVNLISNAVDALSSAPLKQIQITVTEEESQVFISVSDTGIGIEADKLNQIFDPFF 582

Query: 77  TSK 79
           T K
Sbjct: 583 TQK 585


>gi|304317061|ref|YP_003852206.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778563|gb|ADL69122.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 456

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            ++  +   G  +   ++D+G G+  E++P   +R   S
Sbjct: 366 NIKVKLYKEGKYAVLSVSDDGIGIPKEDLPFIYERFYRS 404


>gi|90023344|ref|YP_529171.1| hypothetical protein Sde_3704 [Saccharophagus degradans 2-40]
 gi|89952944|gb|ABD82959.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 506

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)

Query: 20  IERPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           IE+       LIEN+L    D  S  +   +         ++TD G G+   +I      
Sbjct: 397 IEKLDRVFSNLIENALRHTPDGGS--IIVRLQPKAQYVSIEVTDTGIGIPKSDITRIFDP 454

Query: 75  H 75
           H
Sbjct: 455 H 455


>gi|75674203|ref|YP_316624.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74419073|gb|ABA03272.1| DNA gyrase subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 813

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ VE ++     +   + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATAVEVILNAD--NSVTVRDDGRGIPVD 96


>gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 596

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 41  RVETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98
           ++   +A  G    ++T  D G G+ ++++P   +R        D +   + G  G  L 
Sbjct: 501 QIRVSVAPEGADAVRVTIADTGIGIPAQDLPRIFERFY----RVDKARSRSMGGTGLGL- 555

Query: 99  SIG 101
           SI 
Sbjct: 556 SIA 558


>gi|85713968|ref|ZP_01044957.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A]
 gi|85699094|gb|EAQ36962.1| DNA gyrase, B subunit [Nitrobacter sp. Nb-311A]
          Length = 813

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ VE ++     +   + D+G G+  +
Sbjct: 55 VYEVVDNAIDEALAGHATAVEVILNAD--NSVTVRDDGRGIPVD 96


>gi|330979424|gb|EGH78085.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 1003

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 15  AAGEII----ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDN 59
           A G ++    ER    +  L+ N++           DA + + E          F+++D+
Sbjct: 650 AQGLVVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEV--------LFRVSDD 701

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+  E +P   QR+ + K
Sbjct: 702 GIGIPVEHLPFIFQRYWSVK 721


>gi|330944138|gb|EGH46261.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 909

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 15  AAGEII----ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDN 59
           A G ++    ER    +  L+ N++           DA + + E          F+++D+
Sbjct: 619 AQGLVVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEV--------LFRVSDD 670

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+  E +P   QR+ + K
Sbjct: 671 GIGIPVEHLPFIFQRYWSVK 690


>gi|330901046|gb|EGH32465.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 1003

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 15  AAGEII----ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDN 59
           A G ++    ER    +  L+ N++           DA + + E          F+++D+
Sbjct: 650 AQGLVVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEV--------LFRVSDD 701

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+  E +P   QR+ + K
Sbjct: 702 GIGIPVEHLPFIFQRYWSVK 721


>gi|291546030|emb|CBL19138.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Ruminococcus sp.
           SR1/5]
          Length = 419

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L   DA  S +        GK  F+++D G G+  EE+        
Sbjct: 323 LIDNALKATDAGGS-IWVKAYEKAGKKIFEVSDTGMGIPEEELGKITDAFY 372


>gi|291288471|ref|YP_003505287.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885631|gb|ADD69331.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 30  LIENSLDAESSR----VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+L+A  +     +E   +  G +  +I D+G G+    I    +   T+K
Sbjct: 366 LLDNALEAIGTFGNIYIEVETSEDG-TSIEICDDGDGIDPLIIEKLCEPFYTTK 418


>gi|229029256|ref|ZP_04185347.1| hypothetical protein bcere0028_13530 [Bacillus cereus AH1271]
 gi|228732069|gb|EEL82960.1| hypothetical protein bcere0028_13530 [Bacillus cereus AH1271]
          Length = 591

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A     +       G +F ++ D+G G+  E+IP    R  
Sbjct: 489 LIDNAIRHTNAGGHVTLVIDTKNNGLTF-EVQDSGAGIPEEDIPFLFDRFY 538


>gi|229151412|ref|ZP_04279615.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
 gi|228631955|gb|EEK88581.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
          Length = 448

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)

Query: 33  NSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           NS+    DA    +E  +     S    I+DNG GM  EE+     R  
Sbjct: 353 NSIKFSNDAG--TIEFFVEELEYSVIISISDNGIGMEKEEMERIFDRFY 399


>gi|223939323|ref|ZP_03631203.1| histidine kinase [bacterium Ellin514]
 gi|223892036|gb|EEF58517.1| histidine kinase [bacterium Ellin514]
          Length = 774

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 13/52 (25%)

Query: 26 AIKELIENSLDAESSRVETVIAG-----------GGK--SFFQITDNGFGMT 64
          A+ EL++N+ DA S +V+                  K  S   I D G GM 
Sbjct: 27 AVLELVKNAFDAGSRKVDISFKNILSNDDSENPIYSKHSSKIIIQDWGKGMD 78


>gi|118470463|ref|YP_885621.1| DNA gyrase subunit B [Mycobacterium smegmatis str. MC2 155]
 gi|118171750|gb|ABK72646.1| DNA gyrase, B subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 639

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N +D   A  ++RV+  + A GG    Q+ D+G G+            ++ M  Q 
Sbjct: 42  EVVDNGVDEAMAGHATRVDVTLLADGG---VQVCDDGRGIPVAMHETGIPTVDVVM-TQL 97

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K   +   + + G  G  +  + A+S  L +               S     +   
Sbjct: 98  HAGGKFDSESYQV-SGGLHGVGVSVVNALSTRLEVDIHRDGYEWHQHYDHSVPATLTRGN 156

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
            +   GT V          A  +  ++       I   ++ MA     +  T +  +   
Sbjct: 157 PSGGTGTTVRFW-------ADPDVFETTTYSAETIARRLQEMAFLNKGLILTLTDQRDPE 209

Query: 194 YKMNFQSTNGNFPERISQVI 213
            +       G   + +  + 
Sbjct: 210 PQTRTFHHPGGLIDYVKHIN 229


>gi|106734173|gb|ABF82563.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 29 ELIENSLDAES-----SRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+ AE+       ++  I  G  +   + DNG G+  +
Sbjct: 5  EIVDNSI-AEALAGYCDTIKVTIDPG--NSILVEDNGRGIPVD 44


>gi|148651822|ref|YP_001278915.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1]
 gi|148570906|gb|ABQ92965.1| DNA gyrase subunit B [Psychrobacter sp. PRwf-1]
          Length = 884

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A    +++ +I         + DNG G+  +
Sbjct: 71  EVVDNSIDEALAGHCDQIDIIIHED--ESVSVMDNGRGIPID 110


>gi|89897548|ref|YP_521035.1| hypothetical protein DSY4802 [Desulfitobacterium hafniense Y51]
 gi|89336996|dbj|BAE86591.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 748

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 25  IAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L+ N+LDA +      +     G K  F I D G G+  + +        T+K
Sbjct: 641 QVVLNLVTNALDASAEEGIIELRSYREGPKIQFIIQDYGEGIPQDHLKKVFDPFFTTK 698


>gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
 gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
          Length = 506

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 30  LIENSLDAESS--RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L+ N++   ++   +   +    GG  +  + DNG G+  +EIP+ + 
Sbjct: 387 LLSNAIKFTATGGEIRVRVGWTAGGGQYISVKDNGPGIPEDEIPVVLS 434


>gi|42525521|ref|NP_970619.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405]
 gi|4033400|sp|O87545|GYRB_TREDE RecName: Full=DNA gyrase subunit B
 gi|3676691|gb|AAC62070.1| DNA gyrase subunit B [Treponema denticola]
 gi|41815532|gb|AAS10500.1| DNA gyrase, B subunit [Treponema denticola ATCC 35405]
 gi|325475358|gb|EGC78543.1| DNA gyrase subunit B [Treponema denticola F0402]
          Length = 638

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 13/59 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          + E+++N +D   A    ++  V+        ++ DNG G+  +        H T KIS
Sbjct: 40 VYEVVDNCIDEAMAGFCDKILVVLEPN--DIVRVEDNGRGIPVD-------IHPTEKIS 89


>gi|317477007|ref|ZP_07936249.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316906800|gb|EFV28512.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 38/148 (25%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    ++D+G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASIGEFKGEVGDLTVRVSL---GKDTITVSDHGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHQEGAK 140

Query: 118 GAQIAIS-GEKISSVRPVAMNPGTIVEV 144
             +       + +         GT + +
Sbjct: 141 AVKWTCDGSPEFTIEDTEKAERGTDIVL 168


>gi|304383948|ref|ZP_07366405.1| sensor histidine kinase [Prevotella marshii DSM 16973]
 gi|304335026|gb|EFM01299.1| sensor histidine kinase [Prevotella marshii DSM 16973]
          Length = 386

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ L +N++DA   + R+  +      +   ++ D G G+  +++    +   T+K
Sbjct: 288 VVENLCKNAVDAMNGAGRLTLMAEEQAHRVVVEVEDTGRGIRKKDLRNVFRPGFTTK 344


>gi|225849294|ref|YP_002729458.1| hypothetical protein SULAZ_1490 [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644075|gb|ACN99125.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 655

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++   +           DNG G+T E++      + + K
Sbjct: 578 KITVKLQENSV-LILFEDNGRGITKEDLDKVFLPYYSKK 615


>gi|225572887|ref|ZP_03781642.1| hypothetical protein RUMHYD_01078 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039752|gb|EEG49998.1| hypothetical protein RUMHYD_01078 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
            QI DNG G+  E++    Q   T K
Sbjct: 159 LQIEDNGCGIPPEDLSTLFQPFVTHK 184


>gi|224086827|ref|XP_002307976.1| predicted protein [Populus trichocarpa]
 gi|222853952|gb|EEE91499.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
          + E+++N++D   A  +S++  V+     +   ITDNG G+   ++    ++  
Sbjct: 46 VYEILDNAVDEAQAGYASKINVVLHSD--NSISITDNGRGI-PTDLHQVTKKSA 96


>gi|219682388|ref|YP_002468772.1| heat shock protein 90 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219622121|gb|ACL30277.1| heat shock protein 90 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311086208|gb|ADP66290.1| heat shock protein 90 [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086786|gb|ADP66867.1| heat shock protein 90 [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087373|gb|ADP67453.1| heat shock protein 90 [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 624

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 77/594 (12%), Positives = 174/594 (29%), Gaps = 94/594 (15%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEE----IPMAVQ 73
           E I  P     EL EN  D++  +++  I    ++   I+DNG GMT E+    +    +
Sbjct: 51  ESISSP-----ELYEN--DSD-VKIQISINKAQRTLI-ISDNGIGMTKEDTIENLGTIAK 101

Query: 74  RHCTSKI---------SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI 123
               S +          ++       GF      S   VS  +++ +R     +   I  
Sbjct: 102 SGTKSFLQSLEQKQNKKNELIGEFGVGF-----YSSFIVSEKVSVRTRFAGLESNKGILW 156

Query: 124 SGE---KISSVRPVAMNPGTIVEVRDLFFTIPA----RLNFLKSEQVETNLITDVIRRMA 176
                 + +    V    GT + +             R+  + S+  +   I   I+   
Sbjct: 157 ESSGEGEYNITNIVKKTRGTEITLFLKKEEEEFLETWRIKNIISKYSDHITIPIHIQDYD 216

Query: 177 IAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                  +         + +N  S      +   + +  D  +  +  +        Q Y
Sbjct: 217 EKNKTYFWEQINKAKALWTLNKSSITEEEYKDFYKHLTNDQNDPLIWSHNHVE--GNQEY 274

Query: 237 TGIPTFNRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPL------GRYPVVVLLLEI 290
             +       A   +   N   ++       I       +P       G      L L I
Sbjct: 275 ISLLYIPEKAAWDIWNRDNKHGLKLYVKRVYIMDNSQAFLPNYLRFIKGLIDSSDLPLNI 334

Query: 291 DPRQVDVNVHPAKSYIRF------------RNPTIIRNFIIQSIQKAINKKGISTSSVLS 338
               +  N    K                 +                + +        L+
Sbjct: 335 SREILQDNSITEKLRKSLIKKSLSMLEKLAQKNNEKYQIFWNQFGLVLKEGPAEDHENLN 394

Query: 339 K-----KMISSFHQDNAPKTHLPKYATSLTNTQEKL-FLQENRLSTNDLLPSDDPTYSED 392
           K     +  S    ++  K  L +Y +++   QEK+ ++  +  S+ +  P  +     +
Sbjct: 395 KIANLLRFTSMKSNNSEQKMSLKEYISNMNEQQEKIYYITADSYSSANNSPHLELFKKNN 454

Query: 393 NDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIVDQHAAHERL---------IFEKM 443
            D +  S+     +    ++       S + + + +       E+          + E +
Sbjct: 455 IDVLLLSDRIDEWMMNYLSEFEGKKFQSISKEDISL--NKLTKEKKIKNKDVSTEMIEFL 512

Query: 444 RQD-----FNSTKITSQTLLTPEIIDLLEGECALIMEHDEDLHRLG---------IKAER 489
           ++           +     LT     LL     +  +  +     G          +   
Sbjct: 513 KKVKNILGNQVKDVRLTHRLTETPCVLLSDSTEMTTQMAKLFSAAGQSVPELKYIFEI-- 570

Query: 490 FGPNAIAIREIPAILSKKNIPQLLRDIIDE--IIDSS---TTYTLQDRIENILA 538
             P+ I I++I  I ++  + Q ++ ++D+  + +       +    R+  +L 
Sbjct: 571 -NPDHILIKKICTINNENELHQWIKLLLDQALLAEKGNLENPHKFISRMNKLLI 623


>gi|218131110|ref|ZP_03459914.1| hypothetical protein BACEGG_02715 [Bacteroides eggerthii DSM 20697]
 gi|217986630|gb|EEC52964.1| hypothetical protein BACEGG_02715 [Bacteroides eggerthii DSM 20697]
          Length = 682

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 38/148 (25%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    ++D+G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASIGEFKGEVGDLTVRVSL---GKDTITVSDHGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHQEGAK 140

Query: 118 GAQIAIS-GEKISSVRPVAMNPGTIVEV 144
             +       + +         GT + +
Sbjct: 141 AVKWTCDGSPEFTIEDTEKAERGTDIVL 168


>gi|148270256|ref|YP_001244716.1| histidine kinase [Thermotoga petrophila RKU-1]
 gi|147735800|gb|ABQ47140.1| histidine kinase [Thermotoga petrophila RKU-1]
          Length = 183

 Score = 42.0 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 32 ENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
          +NS+ A +  ++  I    + F   + D+G G+  E+         T
Sbjct: 14 QNSVKAGAKNIKIEIEETDEWFCFIVEDDGPGI--EDPERVFDPFFT 58


>gi|331017517|gb|EGH97573.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 744

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 638 ERLFQVLSNLIGNAI--KFTPKLGRIGVAAMSNGDEVVFTVRDSGEGIPPEQLPHIFERY 695

Query: 76  CTSK 79
            T K
Sbjct: 696 WTVK 699


>gi|330966505|gb|EGH66765.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 745

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGRIGVAAMSNGDEVVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|330879167|gb|EGH13316.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 740

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGRIGVAAMSNGDEVVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|310780215|ref|YP_003968547.1| integral membrane sensor signal transduction histidine kinase
           [Ilyobacter polytropus DSM 2926]
 gi|309749538|gb|ADO84199.1| integral membrane sensor signal transduction histidine kinase
           [Ilyobacter polytropus DSM 2926]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 27  IKELIENSLDA--ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           IK +++N++ A      V   I   G +  +I DNG G+T EE      +        + 
Sbjct: 341 IKNIVDNAI-AYGGGESVNISILNEGSAKIKIKDNGAGITEEEQTRIFDKFY----RAEQ 395

Query: 85  SNIHTFGFRGEALP---SIGAVSHLTLM 109
           S     G  G  L    SI  +  L L 
Sbjct: 396 SRNRNLGGHGLGLSIVKSIADILKLDLS 423


>gi|302381122|ref|YP_003816945.1| DNA gyrase subunit beta [Brevundimonas subvibrioides ATCC 15264]
 gi|302191750|gb|ADK99321.1| DNA gyrase, B subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  VE ++   G     +TDNG G+  +
Sbjct: 54 VYEVVDNAIDEALAGHADLVEVILNADG--SVTVTDNGRGIPVD 95


>gi|261250636|ref|ZP_05943211.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891]
 gi|260939205|gb|EEX95192.1| DNA gyrase subunit B [Vibrio orientalis CIP 102891]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 27/157 (17%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I     +   ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCKDIIVTIHED--NSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM----------SRPPQNNTGAQIAIS 124
              K  D+   + + G  G  +  + A+S  +TL           +            + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVTLTIHRGGHTHTQTYHHGEPQAPLAVVG 158

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
               +  +      G      +  + I A+     S 
Sbjct: 159 DTDKTGTQIRFWPSGETFTNTEFHYDILAKRLRELSF 195


>gi|254260578|ref|ZP_04951632.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 1710a]
 gi|254219267|gb|EET08651.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 1710a]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 562 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 601


>gi|302344829|ref|YP_003813182.1| DNA topoisomerase IV subunit B [Prevotella melaninogenica ATCC
           25845]
 gi|302149357|gb|ADK95619.1| DNA topoisomerase IV subunit B [Prevotella melaninogenica ATCC
           25845]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 95/340 (27%), Gaps = 41/340 (12%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+I+NS+D     A   R+E  +         + D G G+   ++  AV    T  K 
Sbjct: 56  LKEVIDNSIDEFKMNAG-DRIEIDVEDN--LRVSVRDYGRGIPQGKLVEAVSVLNTGGKY 112

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL      +H  + S                +    +  
Sbjct: 113 DSKAFK-KSVGLNGVGVKAVNALS-----AHFEVKSFRDGKVRELSFEKGNLQSDKTKKS 166

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIK 190
           A   GT +                K      +++ +++R        ++          +
Sbjct: 167 ADENGTYIYFE-------PDATLFKHYSFHDDIVEEMLRNYTYLNTGLTIMYNGRRILSR 219

Query: 191 SNRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
                +   +   +    I  + GED            +     + G           A 
Sbjct: 220 HGLKDLLTDNMTVDPLYPIVHMKGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQTAF 279

Query: 249 QFYVFINGRTVQDKFILSTIRTAYAETIPLG-RYPVVVLLLEIDPRQVDVNVHPAKSYIR 307
           + ++    +    K+    IR      I +    PV     +I      ++         
Sbjct: 280 KEHIAKTIKEFFGKYEYGDIRNGLVAAIAINVEEPVFESQTKIKLGSTQMSPDGESI--- 336

Query: 308 FRNPTIIRNFIIQSIQKAINKKGISTSSVLSKKMISSFHQ 347
                 + +FI  ++   ++      + +L  K+  +  +
Sbjct: 337 ---NKYVGDFIKTNVDNYLHIHKEDFTDILENKIKETERE 373


>gi|226193710|ref|ZP_03789313.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei Pakistan 9]
 gi|225934288|gb|EEH30272.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei Pakistan 9]
          Length = 677

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 584 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 623


>gi|217419951|ref|ZP_03451457.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 576]
 gi|217397255|gb|EEC37271.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 576]
          Length = 627

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 534 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 573


>gi|213968569|ref|ZP_03396711.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato T1]
 gi|301385791|ref|ZP_07234209.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061465|ref|ZP_07253006.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato K40]
 gi|302133073|ref|ZP_07259063.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926502|gb|EEB60055.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato T1]
          Length = 744

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 638 ERLFQVLSNLIGNAI--KFTPKLGRIGVAAMSNGDEVVFTVRDSGEGIPPEQLPHIFERY 695

Query: 76  CTSK 79
            T K
Sbjct: 696 WTVK 699


>gi|253702327|ref|YP_003023516.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251777177|gb|ACT19758.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 379

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 31  IENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           I+N++    D     V   +    G     + D+G G+  E++P   ++  
Sbjct: 276 IDNAIKFSKDTG--LVCVTLRNRAGSCQISVEDDGIGIPKEQLPKIFEKFY 324


>gi|167909330|ref|ZP_02496421.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 112]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 560 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 599


>gi|167892615|ref|ZP_02480017.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 7894]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 297 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 336


>gi|167822530|ref|ZP_02454001.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 9]
          Length = 627

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 534 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 573


>gi|167736902|ref|ZP_02409676.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei 14]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 567 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 606


>gi|149370482|ref|ZP_01890171.1| DNA topoisomerase IV, subunit B [unidentified eubacterium SCB49]
 gi|149356033|gb|EDM44590.1| DNA topoisomerase IV, subunit B [unidentified eubacterium SCB49]
          Length = 616

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+++NS+D     A    +E  I        ++ D G G+ 
Sbjct: 45 LKEVLDNSIDEFVMGAG-KTIEIRIKD---KIVKVRDYGRGIP 83


>gi|159043746|ref|YP_001532540.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
 gi|157911506|gb|ABV92939.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAE----SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA     + RV   I A  G    ++ D G G+  E          
Sbjct: 506 RLQQVVVNLLSNALDAMTHTPAPRVTLRIIARDGAHMLEVRDIGPGIAPEAAETMFDPFF 565

Query: 77  TSK 79
           T+K
Sbjct: 566 TTK 568


>gi|167917361|ref|ZP_02504452.1| C4-dicarboxylate transport sensor histidine kinase DctB
           [Burkholderia pseudomallei BCC215]
          Length = 627

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 534 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 573


>gi|28869106|ref|NP_791725.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28852346|gb|AAO55420.1| bacteriophytochrome histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 745

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 639 ERLFQVLSNLIGNAI--KFTPKLGRIGVAAMSNGDEVVFTVRDSGEGIPPEQLPHIFERY 696

Query: 76  CTSK 79
            T K
Sbjct: 697 WTVK 700


>gi|76811451|ref|YP_332055.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 1710b]
 gi|76580904|gb|ABA50379.1| C4-dicarboxylate transport sensor protein [Burkholderia
           pseudomallei 1710b]
          Length = 677

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 584 RIDVAIDATAATLAITVRDNGPGIAPESLARLFEPFFTTK 623


>gi|19909543|dbj|BAB86967.1| DNA gyrase subunit B [Caulobacter sp. ATCC 15256]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  VE ++   G     +TDNG G+  +
Sbjct: 11 VYEVVDNAIDEALAGHADLVEVILNADG--SVTVTDNGRGIPVD 52


>gi|19909545|dbj|BAB86968.1| DNA gyrase subunit B [Caulobacter sp. ATCC 15259]
          Length = 474

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  VE ++   G     +TDNG G+  +
Sbjct: 11 VYEVVDNAIDEALAGHADLVEVILNADG--SVTVTDNGRGIPVD 52


>gi|332971209|gb|EGK10172.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Desmospora sp.
          8437]
          Length = 641

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     ++  +     +   + DNG G+ 
Sbjct: 48 EVVDNSIDEALAGRCDTIQVTVNED--NSVTVEDNGRGIP 85


>gi|309778022|ref|ZP_07672963.1| sensor protein ResE [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914212|gb|EFP60011.1| sensor protein ResE [Erysipelotrichaceae bacterium 3_1_53]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            +   +      +  +I D+G G+  E++P   +R  
Sbjct: 248 SIHISVQDNPLHTCIRIQDSGEGIAPEDLPHIFERFY 284


>gi|300088450|ref|YP_003758972.1| DNA gyrase subunit B [Dehalogenimonas lykanthroporepellens
          BL-DC-9]
 gi|299528183|gb|ADJ26651.1| DNA gyrase, B subunit [Dehalogenimonas lykanthroporepellens
          BL-DC-9]
          Length = 641

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E++ NS+D   A    ++  +I   G     + DNG G+  +
Sbjct: 49 VYEVVYNSVDESMAGFCDKINVIIH--GDESISVEDNGRGIPVD 90


>gi|241762703|ref|ZP_04760769.1| ATP-binding region, ATPase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241372685|gb|EER62427.1| ATP-binding region, ATPase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 904

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 15/53 (28%)

Query: 27  IKELIENSLDA---ESS--------RVETVIAG---GGKSFFQITDNGFGMTS 65
           ++EL++N++DA    +S        R+   +     G      + DNG GM+ 
Sbjct: 385 LRELLQNAIDATLLRASIGREGFIPRIRCTLERSETGQLRLI-VEDNGIGMSE 436


>gi|238898809|ref|YP_002924491.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466569|gb|ACQ68343.1| DNA gyrase, subunit B (type II topoisomerase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 804

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 89/248 (35%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A    ++  +I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNAIDESLAGYCKKITVIIHED--NSVSVEDDGRGIPTGIHEEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM-SRPPQNNTGAQIAISGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  SR  + +   Q  + GE  + ++ 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELTISR--EGSIHQQTYVMGEPQAPLKV 156

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
           +     T   VR      P+   F    + + +++   +R ++     V F     K N 
Sbjct: 157 MGKTELTGTRVRF----WPSLKTFTNQTEFQYDILAKRLRELSFLNSGV-FICLEDKRND 211

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            + +F    G     ++ +       +       + +  +     +   N G     Y F
Sbjct: 212 QEKHFHYEGG-IQAFVTYLNKNKTPIHPKVFYFSTVKDDIGVEVALQW-NDGFQENIYCF 269

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 270 TNNIPQRD 277


>gi|226365363|ref|YP_002783146.1| heat shock protein 90 [Rhodococcus opacus B4]
 gi|226243853|dbj|BAH54201.1| chaperone protein HtpG [Rhodococcus opacus B4]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 45/187 (24%)

Query: 25  IAIKELIENSLDA------ESSR------------VETVIAGGGKSFFQITDNGFGMTSE 66
             ++ELI N+ DA      E+ R            +E  +    ++   + DNG GM+ E
Sbjct: 31  SFLRELISNASDALDKLRLEAFRNKDLDVDTSDLHIEIEVDAENRTL-TVRDNGIGMSHE 89

Query: 67  EIPMAVQRHCTS-------KISDDFSNIHT--------FGFRGEALPSIGAVS-HLTLMS 110
           E+   +     S       K+ +      +         GF      S   V+  +TL++
Sbjct: 90  EVVDLIGTLAKSGTADLRRKLREAKDAAASEELIGQFGIGF-----YSTFMVADKVTLLT 144

Query: 111 RPPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           R    +   +   SGE   ++  V     G+ V         P        +      + 
Sbjct: 145 RKAGESEATRWESSGEATYTIEAVDDAPQGSSVT----LHLKPEDAEDHLHDYTSERKVK 200

Query: 170 DVIRRMA 176
           ++++R +
Sbjct: 201 ELVKRYS 207


>gi|240145738|ref|ZP_04744339.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|257202154|gb|EEV00439.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|291536986|emb|CBL10098.1| DNA gyrase subunit B [Roseburia intestinalis M50/1]
 gi|291539810|emb|CBL12921.1| DNA gyrase subunit B [Roseburia intestinalis XB6B4]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +E  I     +   + D+G G+ 
Sbjct: 46 VYEIVDNAVDEALAGYCKNIEVTINPD--NSITVEDDGRGIP 85


>gi|254503178|ref|ZP_05115329.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439249|gb|EEE45928.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 607

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 16/70 (22%)

Query: 14  IAAGEIIERPSIAIKELIENSLDAES-----SRVETVIAGGGKS-FFQITDNGFGMTSEE 67
           I  G++I         L++N   A S       V   +   G+     + D+G G+ +E 
Sbjct: 487 IRLGQVISN-------LLDN---ARSFSPKKGTVRVDLGRDGREIKITVDDDGPGIRAEN 536

Query: 68  IPMAVQRHCT 77
                +R  T
Sbjct: 537 TERIFERFYT 546


>gi|220917858|ref|YP_002493162.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955712|gb|ACL66096.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 591

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 22  RPSIAIKELIENSLDAESSR-VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH--CT 77
           R   A+  L+ N++   + R VE  +   G      + D+G G+   +      R    T
Sbjct: 463 RLEQALGHLLSNAVRHGAGRPVEIRVEAAGALGRMVVVDHGSGVAPADAERIFGRFERAT 522

Query: 78  S 78
           S
Sbjct: 523 S 523


>gi|156973195|ref|YP_001444102.1| DNA topoisomerase IV subunit B [Vibrio harveyi ATCC BAA-1116]
 gi|156524789|gb|ABU69875.1| hypothetical protein VIBHAR_00875 [Vibrio harveyi ATCC BAA-1116]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            TF+       K           + +++
Sbjct: 200 ITFT--DKVNNKDYKWHYEDGLKDYLAE 225


>gi|111022855|ref|YP_705827.1| heat shock protein 90 [Rhodococcus jostii RHA1]
 gi|118575204|sp|Q0S467|HTPG_RHOSR RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|110822385|gb|ABG97669.1| chaperone protein HtpG (heat shock protein HtpG) [Rhodococcus
           jostii RHA1]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 45/187 (24%)

Query: 25  IAIKELIENSLDA------ESSR------------VETVIAGGGKSFFQITDNGFGMTSE 66
             ++ELI N+ DA      E+ R            VE  +    K    + DNG GM+ +
Sbjct: 31  SFLRELISNASDALDKLRLEAFRNKELHVDTSDLHVEIEV-DAEKRTLTVRDNGIGMSHD 89

Query: 67  EIPMAVQRHCTS-------KISDDFSNIHT--------FGFRGEALPSIGAVS-HLTLMS 110
           E+   +     S       K+ +      +         GF      S   V+  +TL++
Sbjct: 90  EVVDLIGTLAKSGTADLRRKLKEAKDAAASEELIGQFGIGF-----YSTFMVADKVTLLT 144

Query: 111 RPPQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
           R    +   +   SGE   ++  V     G+ V         P        +      I 
Sbjct: 145 RKAGESEATRWESSGEATYTIEAVDDAPQGSSVT----LHLKPEDAEDHLHDYTSERKIK 200

Query: 170 DVIRRMA 176
           ++++R +
Sbjct: 201 ELVKRYS 207


>gi|86360854|ref|YP_472741.1| heat shock protein 90 [Rhizobium etli CFN 42]
 gi|118575200|sp|Q2JZH2|HTPG_RHIEC RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|86284956|gb|ABC94014.1| heat shock chaperone protein, Hsp90 family [Rhizobium etli CFN 42]
          Length = 630

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 18  EIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAV----- 72
           E IE PS     L+  + DAES R+   +    +    + DNG GM  +E+  A+     
Sbjct: 54  EAIETPS-----LL--AADAES-RIMLRLDEESRQLV-VEDNGIGMRRDEMIEALGTIAR 104

Query: 73  -------QRHCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIA 122
                  +R   +K ++    I  F  GF      S   V+ H+ ++SR   +    + +
Sbjct: 105 SGTRAFMERIAENKAAEGAQFIGQFGVGF-----YSCFMVAEHVDVISRRAGSEEAWKWS 159

Query: 123 ISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
             G+   SV    +        R +   +     +    
Sbjct: 160 SDGKGSYSVEAANLVEAPARGTRIVLHLMEDAKTYTSRW 198


>gi|332524648|ref|ZP_08400847.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107956|gb|EGJ09180.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 763

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 22/88 (25%)

Query: 5   KLSEKI--INQIAAGEIIERPSIAIKELIENSLDAESSRVE--TVI-------AGGGKSF 53
            L   +    QI   ++I         L++N+LDA S R +    I         G    
Sbjct: 613 PLPRILGDATQIR--QVIHN-------LVQNALDAVSERADGRVEIGTARSLGDNGELRA 663

Query: 54  FQ--ITDNGFGMTSEEIPMAVQRHCTSK 79
            +  + DNG G   + +  A + + T+K
Sbjct: 664 VRLFVQDNGPGFPDKVLKRAFEPYVTTK 691


>gi|304408435|ref|ZP_07390081.1| ATP-binding region ATPase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342620|gb|EFM08468.1| ATP-binding region ATPase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 1121

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 14/82 (17%)

Query: 21  ERPSIAIKELIENSLDA----ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E    AI+E I+N++DA    ++        +E  +         I DNG GM    +  
Sbjct: 556 EDKYDAIREAIQNAIDACQLRKAKEPTYVPEIEVRLTD---KDIVIIDNGRGMDEYIVQN 612

Query: 71  AVQRHCTSKISD-DFSNIHTFG 91
              + C S   D +  +I  FG
Sbjct: 613 YFSKLCKSYYKDFEIDSIGQFG 634


>gi|293393249|ref|ZP_06637564.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291424395|gb|EFE97609.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 452

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 27  IKELIENSLD---AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +K LIEN++    A ++ +   I         + D G G+  E++ +   R 
Sbjct: 361 LKNLIENAIQHAPA-ATEIAIDINA---DSISVRDWGPGVEPEQLSVMFSRF 408


>gi|317133073|ref|YP_004092387.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471052|gb|ADU27656.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 40  SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + V   +    G S   I D+G G++ + +P   +R  
Sbjct: 384 TSVTVSLRMEAGYSTISIADDGPGISPDALPHLFERFY 421


>gi|251778344|ref|ZP_04821264.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243082659|gb|EES48549.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 465

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMA---VQRHCTSK 79
            V  +   G       + DNG G++  ++P       +   SK
Sbjct: 378 NVNVIFNEGEDDLKIVVEDNGCGISKSDLPKVKEKFYKGANSK 420


>gi|239991976|ref|ZP_04712640.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + GGG    ++TD G G+ ++++P    R 
Sbjct: 388 VTGGGTVVIEVTDTGSGIPADDLPHVFDRF 417


>gi|239945511|ref|ZP_04697448.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|291448967|ref|ZP_06588357.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291351914|gb|EFE78818.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 687

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           + GGG    ++TD G G+ ++++P    R 
Sbjct: 594 VTGGGTVVIEVTDTGSGIPADDLPHVFDRF 623


>gi|256397298|ref|YP_003118862.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Catenulispora acidiphila DSM 44928]
 gi|256363524|gb|ACU77021.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Catenulispora acidiphila DSM 44928]
          Length = 538

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 16/65 (24%)

Query: 30  LIENSLDA------------ES-SRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQR 74
           LI+N+L+A             +  +V   ++    G S  ++ DNG G+  E       R
Sbjct: 430 LIDNALEAVGGAGGNGETWSGAPKQVWIELSDDASGLS-IRVADNGPGIAPERREEVFVR 488

Query: 75  HCTSK 79
             T+K
Sbjct: 489 GFTTK 493


>gi|254511973|ref|ZP_05124040.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium
          KLH11]
 gi|221535684|gb|EEE38672.1| DNA topoisomerase IV, B subunit [Rhodobacteraceae bacterium
          KLH11]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +         + DNG G+  +
Sbjct: 48 VAEILDNSMDEAVAGHANRIEVELHDD--YALTVRDNGRGIPID 89


>gi|218673349|ref|ZP_03523018.1| DNA gyrase subunit B [Rhizobium etli GR56]
          Length = 362

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 72  VYEVVDNAIDEALAGHADIVTVSLNPDG--SVTVTDNGRGIPTD 113


>gi|218662159|ref|ZP_03518089.1| DNA gyrase subunit B [Rhizobium etli IE4771]
          Length = 356

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVSLNPDG--SVTVTDNGRGIPTD 91


>gi|190889652|ref|YP_001976194.1| DNA gyrase, B subunit [Rhizobium etli CIAT 652]
 gi|190694931|gb|ACE89016.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
 gi|327191183|gb|EGE58226.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVSLNPDG--SVTVTDNGRGIPTD 91


>gi|146300010|ref|YP_001194601.1| DNA gyrase, B subunit [Flavobacterium johnsoniae UW101]
 gi|146154428|gb|ABQ05282.1| DNA gyrase subunit B [Flavobacterium johnsoniae UW101]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D A       +   I   G     + DNG G+  +
Sbjct: 44 VYEVVDNSIDEAMGGHCDTIGVTINEDG--SVTVEDNGRGIPVD 85


>gi|90420575|ref|ZP_01228482.1| two-component sensor histidine kinase, heavy metal repsonse
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335303|gb|EAS49056.1| two-component sensor histidine kinase, heavy metal repsonse
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 607

 Score = 41.6 bits (96), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 18/85 (21%)

Query: 4   RKLSEKIINQIAAGEIIE----RPSIAIKELIENSLDAES------SRVETVIAG-GGKS 52
           + L       I  G ++     R S     LIEN   A S       R++ ++     + 
Sbjct: 474 QALPGS----IKDGYVVTGHDLRLSQVFTNLIEN---ARSFVPETNGRIDVLLRRRNSRV 526

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCT 77
              + DNG G+ +E I    +R  T
Sbjct: 527 VIVVEDNGPGIQAEIIDRIFERFYT 551


>gi|327188314|gb|EGE55532.1| DNA gyrase protein, B subunit [Rhizobium etli CNPAF512]
          Length = 743

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  ++ +E  +   G  +  +TDNG G+  E  P
Sbjct: 140 EVIDNAMDEAVAGHANFIEVHLDLQG--YLTVTDNGRGIPVENHP 182


>gi|323138725|ref|ZP_08073791.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
 gi|322396080|gb|EFX98615.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 26  AIKELIENSLDA---ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +  L++N+L A     + V   +   G    +I D+G G+ +E++    +  
Sbjct: 359 VVANLLDNALRAEPLGGT-VRVRVEDDGI--VEIADHGEGIAAEDMEKIFEPF 408


>gi|312172171|emb|CBX80428.1| putative 2-component sensor protein [Erwinia amylovora ATCC
           BAA-2158]
          Length = 546

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+L+A        +  ++    G    +++D+G G+ +  +     +  +SK
Sbjct: 445 LIENALEAAGENGDGEISVLLHYHNGWLSCEVSDDGPGIAAARLKDLFTKGYSSK 499


>gi|312959202|ref|ZP_07773720.1| response regulator/sensor histidine kinase [Pseudomonas fluorescens
           WH6]
 gi|311286462|gb|EFQ65025.1| response regulator/sensor histidine kinase [Pseudomonas fluorescens
           WH6]
          Length = 459

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 14/71 (19%)

Query: 20  IERPSI----AIKELIENSLDAES-----SRVETV--IAGGGKSFFQITDNGFGMTSEEI 68
           IE  +      +  L+ N+  A++       +     + G      ++ DNG G+  E +
Sbjct: 345 IECLASQINQVVMNLVVNA--AQAMGPERGTITISNGVEGENIWL-EVADNGCGIAPETV 401

Query: 69  PMAVQRHCTSK 79
                   T+K
Sbjct: 402 QKIFDPFFTTK 412


>gi|292488046|ref|YP_003530923.1| putative 2-component sensor protein [Erwinia amylovora CFBP1430]
 gi|292899256|ref|YP_003538625.1| two-component sensor kinase [Erwinia amylovora ATCC 49946]
 gi|291199104|emb|CBJ46217.1| two-component sensor kinase [Erwinia amylovora ATCC 49946]
 gi|291553470|emb|CBA20515.1| putative 2-component sensor protein [Erwinia amylovora CFBP1430]
          Length = 546

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+L+A        +  ++    G    +++D+G G+ +  +     +  +SK
Sbjct: 445 LIENALEAAGENGDGEISVLLHYHNGWLSCEVSDDGPGIAAARLKDLFTKGYSSK 499


>gi|255971089|ref|ZP_05421675.1| predicted protein [Enterococcus faecalis T1]
 gi|255962107|gb|EET94583.1| predicted protein [Enterococcus faecalis T1]
          Length = 258

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 19  IIERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGM 63
           +I      +KEL EN +    DAE  +V   I         + D+G G+
Sbjct: 148 VIAPLYRIVKELNEN-IGKHADAELGKVTVEIDNAEIQLI-VEDDGVGV 194


>gi|291613480|ref|YP_003523637.1| histidine kinase [Sideroxydans lithotrophicus ES-1]
 gi|291583592|gb|ADE11250.1| histidine kinase [Sideroxydans lithotrophicus ES-1]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 40  SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC----TS 78
           + VE  I    G+    ++DNG G+   E+    +R      TS
Sbjct: 363 TSVEIGIAEEHGRVSLSVSDNGPGIPEAELDKVAERFYRPLGTS 406


>gi|253576475|ref|ZP_04853804.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251844112|gb|EES72131.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 596

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 30  LIENSL------DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           L+EN++       AE   ++      G++   +I DNG GM+ + +     
Sbjct: 485 LVENAIHHGIEKSAEQGFIDIEARLEGENLIFRIRDNGIGMSPDTVEKLFS 535


>gi|218662277|ref|ZP_03518207.1| DNA topoisomerase IV subunit B [Rhizobium etli IE4771]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  ++ +E  +   G  +  +TDNG G+  E  P
Sbjct: 136 EVIDNAMDEAVAGHANFIEVHLDLQG--YLTVTDNGRGIPVENHP 178


>gi|190891866|ref|YP_001978408.1| DNA gyrase, B subunit [Rhizobium etli CIAT 652]
 gi|190697145|gb|ACE91230.1| DNA gyrase protein, B subunit [Rhizobium etli CIAT 652]
          Length = 693

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  ++ +E  +   G  +  +TDNG G+  E  P
Sbjct: 90  EVIDNAMDEAVAGHANFIEVHLDLQG--YLTVTDNGRGIPVENHP 132


>gi|119475917|ref|ZP_01616269.1| sensor histidine kinase [marine gamma proteobacterium HTCC2143]
 gi|119450544|gb|EAW31778.1| sensor histidine kinase [marine gamma proteobacterium HTCC2143]
          Length = 445

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 23  PSIAIKELIENSLDAESS----RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  +K L++N++  + +     +   IA  G  +   + D+G G+   ++     R  
Sbjct: 327 LATLLKNLVDNAI--KYTPVNGTIVIAIAAMGSVATIAVEDSGSGIKEADLQRVFDRFY 383


>gi|86357804|ref|YP_469696.1| DNA topoisomerase IV subunit B [Rhizobium etli CFN 42]
 gi|86281906|gb|ABC90969.1| DNA topoisomerase IV subunit B protein [Rhizobium etli CFN 42]
          Length = 660

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+I+N++D   A  ++ +E  +   G  +  +TDNG G+  E  P
Sbjct: 57 EVIDNAMDEAVAGHANFIEVHLDLQG--YLTVTDNGRGIPVENHP 99


>gi|78780112|ref|YP_398224.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
 gi|78713611|gb|ABB50788.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9312]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E V+   G +    +DNG G+ ++
Sbjct: 48 VYEVVDNSVDEALAGHCDHIEIVLQSDGSALI--SDNGRGIPTD 89


>gi|76802511|ref|YP_327519.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76558376|emb|CAI49967.2| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           +R    I+ L+ N++D     V       G +   I D+G G+   E     +R  T  +
Sbjct: 246 DRLRQLIENLLGNAVDHGGEVVRVEPTADGFA---IEDDGPGIPESERERVFERGHT--L 300

Query: 81  SDD 83
           S+D
Sbjct: 301 SED 303


>gi|150391006|ref|YP_001321055.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950868|gb|ABR49396.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 30  LIENSL---DAESSRVETVIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L+ N+L   D + + V   +     G     + DNG G+ +E+IP   +R        D 
Sbjct: 369 LLSNALKFTDHDGT-VSVSLKEEKDGVRL-TVIDNGIGIENEDIPYVFERFY----RSDL 422

Query: 85  SNIHTFG 91
           S   + G
Sbjct: 423 SRNRSTG 429


>gi|329893668|ref|ZP_08269802.1| Sensor histidine kinase PrrB (RegB) [gamma proteobacterium
           IMCC3088]
 gi|328923595|gb|EGG30907.1| Sensor histidine kinase PrrB (RegB) [gamma proteobacterium
           IMCC3088]
          Length = 419

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSE 66
            + AI+ L+ N+L+A S  +E  ++  GK     I D G G+ SE
Sbjct: 319 LAPAIENLLNNALEAGSELIEVTLSCYGKEIQIAIRDYGSGIPSE 363


>gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 425

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 27  IKELIENSLDAESSR-------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
           IK+++ NS+D  + +       +   +   GK     + D G G+  E     + +H T 
Sbjct: 321 IKQILINSID-NAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPE-----ILKHVTE 374

Query: 79  KI 80
           K 
Sbjct: 375 KF 376


>gi|319404951|emb|CBI78553.1| DNA gyrase subunit B [Bartonella sp. AR 15-3]
          Length = 809

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGYATLVNVTLHADG--SCSVHDNGRGIPTD 89


>gi|295707086|ref|YP_003600161.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294804745|gb|ADF41811.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 30  LIENSLDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           L++N++   + ++E  +    +    ++ D G G+  E++    +R  
Sbjct: 351 LLDNAIKYSTDKIEVTVEKKQEDVIIKVKDYGIGIPKEDLAHIFERFY 398


>gi|294506864|ref|YP_003570922.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
 gi|294343192|emb|CBH23970.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
          Length = 352

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQ 73
           +R    +  L++N++    D         +    ++     ++ D+G G++ + +P   +
Sbjct: 236 DRLRRVLVNLVDNAIKYNQDGG----TVQLEAESQNDEVVIRVVDDGIGISPDHLPRLTE 291

Query: 74  RHC 76
           R  
Sbjct: 292 RFY 294


>gi|253688784|ref|YP_003017974.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755362|gb|ACT13438.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 572

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 15  AAGEIIERPSIAIKELIENSLD-AESSRVET--VIAGGGKSFFQITDNGFGM 63
           A+ ++       I+E + N++  A+++ +         G+    I D+G G+
Sbjct: 463 ASQQV--HLLQIIREAVLNAIKHAQATAITVNCRTQPDGRHCVDIRDDGCGI 512


>gi|251795024|ref|YP_003009755.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542650|gb|ACS99668.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +I+NS++A     R++      G +    I DNG GMT  E+    + + ++K
Sbjct: 533 MIKNSIEALKNEGRIDISGYMEGNRVVICIKDNGEGMTEAELVKLGEPYYSNK 585


>gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 27  IKELIENSLDAESSR-------VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
           IK+++ NS+D  + +       +   +   GK     + D G G+  E     + +H T 
Sbjct: 369 IKQILINSID-NAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPE-----ILKHVTE 422

Query: 79  KI 80
           K 
Sbjct: 423 KF 424


>gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 10/76 (13%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           L++N+L   D  S+  ++            ++D G G+  E++P   +R        D S
Sbjct: 357 LLDNALKYADQGSTVSIDARAEKDNIVMI-VSDEGRGIPEEDLPHIFERFY----RVDKS 411

Query: 86  NIHTFGFRGEALPSIG 101
              T G  G  L  I 
Sbjct: 412 RSRTSGGTGLGLA-IA 426


>gi|126666846|ref|ZP_01737822.1| hypothetical signal transduction histidine kinase regulating
           citrate/malate metabolism [Marinobacter sp. ELB17]
 gi|126628562|gb|EAZ99183.1| hypothetical signal transduction histidine kinase regulating
           citrate/malate metabolism [Marinobacter sp. ELB17]
          Length = 548

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 21  ERPSIAIKELIENSLDA-----ESS-RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           E+    +  LI+N+L+A      ++ RV+  +   G+    ++ D G G+  E      +
Sbjct: 427 EQLVSVLGNLIDNALEATRRHTGANGRVQLSMTDLGQELIFEVEDQGPGIPLEVQNRMFE 486

Query: 74  RHCTSK 79
           +  TSK
Sbjct: 487 KGVTSK 492


>gi|1790875|gb|AAB41130.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
          Length = 637

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S ++  I     +   ++D+G GM 
Sbjct: 42 VYEIVDNSIDEALAGYCSHIKVFIHKD--NSVTVSDDGRGMP 81


>gi|83815466|ref|YP_444999.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756860|gb|ABC44973.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
          Length = 322

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQ 73
           +R    +  L++N++    D         +    ++     ++ D+G G++ + +P   +
Sbjct: 206 DRLRRVLVNLVDNAIKYNQDGG----TVQLEAESQNDEVVIRVVDDGIGISPDHLPRLTE 261

Query: 74  RHC 76
           R  
Sbjct: 262 RFY 264


>gi|15893304|ref|NP_346653.1| DNA gyrase subunit B [Clostridium acetobutylicum ATCC 824]
 gi|18273027|sp|P94604|GYRB_CLOAB RecName: Full=DNA gyrase subunit B
 gi|15022823|gb|AAK77993.1|AE007513_6 DNA gyrase (topoisomerase II) B subunit [Clostridium
          acetobutylicum ATCC 824]
 gi|325507413|gb|ADZ19049.1| DNA gyrase subunit B [Clostridium acetobutylicum EA 2018]
          Length = 637

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S ++  I     +   ++D+G GM 
Sbjct: 42 VYEIVDNSIDEALAGYCSHIKVFIHKD--NSVTVSDDGRGMP 81


>gi|332527398|ref|ZP_08403454.1| integral membrane sensor signal transduction histidine kinase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111807|gb|EGJ11787.1| integral membrane sensor signal transduction histidine kinase
           [Rubrivivax benzoatilyticus JA2]
          Length = 497

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 20  IERPSIA-IKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQR 74
           +E      I+ L+EN+L    A ++ V   +A  G +    + D+G GM   +I    +R
Sbjct: 390 VEALLSVLIRNLVENALRYSPAGAT-VRATVARHGSTVVLTVEDSGPGMAEADIARLGER 448

Query: 75  H 75
            
Sbjct: 449 F 449


>gi|332526412|ref|ZP_08402534.1| response regulator receiver sensor signal transduction histidine
           kinase [Rubrivivax benzoatilyticus JA2]
 gi|332110544|gb|EGJ10867.1| response regulator receiver sensor signal transduction histidine
           kinase [Rubrivivax benzoatilyticus JA2]
          Length = 371

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 17/59 (28%)

Query: 37  AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRG 94
           A+++RV   ++  GG    +I+DNG G+++E++  A                 +FG RG
Sbjct: 275 AQATRVSLDLSLTGGVLSLEISDNGRGLSAEDLAKA----------------QSFGIRG 317


>gi|296105501|ref|YP_003617201.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Legionella pneumophila 2300/99 Alcoy]
 gi|295647402|gb|ADG23249.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Legionella pneumophila 2300/99 Alcoy]
 gi|307608754|emb|CBW98136.1| DNA gyrase, subunit B [Legionella pneumophila 130b]
          Length = 779

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 18 EVVDNSIDESLAGYCKEIFVTIHSD--ESITVKDDGRGIPVD 57


>gi|256376406|ref|YP_003100066.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM
          43827]
 gi|255920709|gb|ACU36220.1| DNA gyrase subunit B domain protein [Actinosynnema mirum DSM
          43827]
          Length = 680

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+I+NS D   A  ++R+   +   G    Q+ D+G G+ 
Sbjct: 43 EVIDNSTDEGVAGHATRITVTLHPDG--SVQVDDDGRGIP 80


>gi|237802074|ref|ZP_04590535.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024930|gb|EGI04986.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 263

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R +  +  L+ N+ DA    S+ RV + ++        + D G G++   +    +   
Sbjct: 147 QRLAQVLINLLSNARDASPAGSTVRVRSEVSEHTVDLI-VEDEGSGISKAIMDRLFEPFF 205

Query: 77  TSK 79
           T+K
Sbjct: 206 TTK 208


>gi|257064500|ref|YP_003144172.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
 gi|256792153|gb|ACV22823.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
             +  L+EN++      VE  +A  G++    + DNG G+  ++     +R  
Sbjct: 354 QVVCNLLENAIRYGGGLVEVKVARCGENIELSVADNGPGIPDDQKERVFERFY 406


>gi|229026129|ref|ZP_04182503.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
 gi|228735171|gb|EEL85792.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   + +   K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|148358143|ref|YP_001249350.1| DNA gyrase subunit B [Legionella pneumophila str. Corby]
 gi|148279916|gb|ABQ54004.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          pneumophila str. Corby]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 44 EVVDNSIDESLAGYCKEIFVTIHSD--ESITVKDDGRGIPVD 83


>gi|52840260|ref|YP_094059.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila
          str. Philadelphia 1]
 gi|52627371|gb|AAU26112.1| DNA gyrase subunit B [Legionella pneumophila subsp. pneumophila
          str. Philadelphia 1]
          Length = 806

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 45 EVVDNSIDESLAGYCKEIFVTIHSD--ESITVKDDGRGIPVD 84


>gi|54295987|ref|YP_122356.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          pneumophila str. Paris]
 gi|53749772|emb|CAH11152.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          pneumophila str. Paris]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 44 EVVDNSIDESLAGYCKEIFVTIHSD--ESITVKDDGRGIPVD 83


>gi|54292968|ref|YP_125383.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          pneumophila str. Lens]
 gi|53752800|emb|CAH14234.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          pneumophila str. Lens]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 44 EVVDNSIDESLAGYCKEIFVTIHSD--ESITVKDDGRGIPVD 83


>gi|108803039|ref|YP_642976.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108764282|gb|ABG03164.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 476

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 22  RPSIAIKELIENSLDAESS------RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQR 74
           R   A+  L++N+    +       R+  +     G+   +++D+G G+  EE+P   +R
Sbjct: 351 RVEQAVLILVDNA----AKYGRPGGRISLLARREAGELVIEVSDDGPGIPEEELPRIFER 406

Query: 75  HC 76
             
Sbjct: 407 FY 408


>gi|312138552|ref|YP_004005888.1| two component system sensor kinase [Rhodococcus equi 103S]
 gi|311887891|emb|CBH47203.1| putative two component system sensor kinase [Rhodococcus equi 103S]
          Length = 561

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
             ++E + N+L  A+++ ++ VI    +   +I D+G G+  
Sbjct: 480 AVLREGLSNALRHADATTIDVVIDAADRLTIRICDDGVGVPE 521


>gi|297798278|ref|XP_002867023.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312859|gb|EFH43282.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ V+      +     +     D+G GM    +   +    +S
Sbjct: 93  AIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALLF-QDDGGGMDPTGLRKCMSLGYSS 151

Query: 79  K 79
           K
Sbjct: 152 K 152


>gi|325676384|ref|ZP_08156063.1| GAF family protein [Rhodococcus equi ATCC 33707]
 gi|325552945|gb|EGD22628.1| GAF family protein [Rhodococcus equi ATCC 33707]
          Length = 561

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
             ++E + N+L  A+++ ++ VI    +   +I D+G G+  
Sbjct: 480 AVLREGLSNALRHADATTIDVVIDAADRLTIRICDDGVGVPE 521


>gi|289673699|ref|ZP_06494589.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 15  AAGEII----ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDN 59
           A G ++    ER    +  L+ N++           DA + + E          F+++D+
Sbjct: 269 AQGLVVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEV--------LFRVSDD 320

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+  E +P   QR+ + K
Sbjct: 321 GIGIPVEHLPFIFQRYWSVK 340


>gi|225849089|ref|YP_002729253.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644480|gb|ACN99530.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 332

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 23  PSIAIKELIENSLD---AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            SIA+K LIEN++         +   +     +   + D G G+  E IP+  +R  
Sbjct: 226 LSIALKNLIENAIKYNKQNGKVIVKAVKDSKYTTITVEDTGIGIPEESIPLIFERFY 282


>gi|242279658|ref|YP_002991787.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242122552|gb|ACS80248.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 498

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 12/66 (18%)

Query: 18  EIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           ++I   +        N++ A        ++  ++ G   +  + DNG G+ ++++     
Sbjct: 391 QVIVNLAA-------NAIQAMDEGGVLTIK-TLSDGNDVYIIVDDNGPGIHADDLKQIFN 442

Query: 74  RHCTSK 79
              T+K
Sbjct: 443 PFFTTK 448


>gi|167758393|ref|ZP_02430520.1| hypothetical protein CLOSCI_00733 [Clostridium scindens ATCC 35704]
 gi|167664290|gb|EDS08420.1| hypothetical protein CLOSCI_00733 [Clostridium scindens ATCC 35704]
          Length = 308

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 14  IAAGEIIER---PSIAIKELIENSL---DAESSRVETV----IAGGGKSFFQITDNGFGM 63
           IA+ E+I      +  + +++ N+L   D ES RV           GK+  ++ DNG G+
Sbjct: 189 IASIEVISDRKVLAFMLAQILSNALKYADQESGRVSVDGWMDAKEEGKAHLKVRDNGNGV 248

Query: 64  TSEEIPMAVQRHCT 77
             E++P    +  T
Sbjct: 249 PYEDLPFIFDKGFT 262


>gi|157414241|ref|YP_001485107.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388816|gb|ABV51521.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9215]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E V+   G +    +DNG G+ ++
Sbjct: 48 VYEVVDNSVDEALAGHCDHIEIVLRADGSALI--SDNGRGIPTD 89


>gi|186474995|ref|YP_001856465.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phymatum STM815]
 gi|184191454|gb|ACC69419.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phymatum STM815]
          Length = 683

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDA-ESS---RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA  ++   R+   +          ++DNG G+  E +P   +   
Sbjct: 563 RLEQVLINLLGNALDAVAATPSPRIAIGVQTSPDVLTLTVSDNGPGIPDEVLPRLFEPFF 622

Query: 77  TSK 79
           T+K
Sbjct: 623 TTK 625


>gi|13430804|gb|AAK26024.1|AF360314_1 unknown protein [Arabidopsis thaliana]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ V+      +     +     DNG GM    I   +    +S
Sbjct: 105 AIAELLDNAVDEIQNGATVVKIDKINIVKDNTPALVF-QDNGGGMDPNGIRKCMSLGYSS 163

Query: 79  K 79
           K
Sbjct: 164 K 164


>gi|18419817|ref|NP_568000.1| ATP-binding region, ATPase-like domain-containing protein
           [Arabidopsis thaliana]
 gi|25054923|gb|AAN71939.1| unknown protein [Arabidopsis thaliana]
 gi|332661244|gb|AEE86644.1| compromised recognition of TCV 1 protein [Arabidopsis thaliana]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ V+      +     +     DNG GM    I   +    +S
Sbjct: 105 AIAELLDNAVDEIQNGATVVKIDKINIVKDNTPALVF-QDNGGGMDPNGIRKCMSLGYSS 163

Query: 79  K 79
           K
Sbjct: 164 K 164


>gi|194334982|ref|YP_002016842.1| integral membrane sensor hybrid histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312800|gb|ACF47195.1| integral membrane sensor hybrid histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 716

 Score = 41.6 bits (96), Expect = 0.35,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 36  DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           DA   R+   I  G  ++   + D G G+ SE +        TS
Sbjct: 344 DA---RITIRIEKGASRNRVYVRDTGPGIPSENLDKLFDAFFTS 384


>gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 30  LIENSLDAESS----RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++    +    R+        GK+F Q++D G G++ +++P    +  
Sbjct: 372 LIQNAI--NHTPTHGRIIVSAEKHDGKAFIQVSDTGRGISPDDLPHIFDKFY 421


>gi|332299200|ref|YP_004441122.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168]
 gi|332182303|gb|AEE17991.1| DNA gyrase, B subunit [Treponema brennaborense DSM 12168]
          Length = 638

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 15/63 (23%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPMAVQR 74
          + E+++N +D   A     +  V+        ++ DNG G+  +         + + + R
Sbjct: 39 VYEVVDNCIDEAMAGFCDTIVVVLEKD--DIVRVEDNGRGIPVDIHPTEGISALELVLTR 96

Query: 75 -HC 76
           H 
Sbjct: 97 LHA 99


>gi|319779376|ref|YP_004130289.1| Topoisomerase IV subunit B [Taylorella equigenitalis MCE9]
 gi|317109400|gb|ADU92146.1| Topoisomerase IV subunit B [Taylorella equigenitalis MCE9]
          Length = 630

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P   I+E+I+NS D   A  + ++   +         + D+G G+      EE    +
Sbjct: 6  DNPLHIIQEVIDNSADEALAGFAKKISVTLNED--LSVTVEDDGRGIPVGLHPEEHVPVV 63

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 64 EIVFTRLHA 72


>gi|302345903|ref|YP_003814256.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302150041|gb|ADK96303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 374

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 26  AIKELIENSLDA-----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA      S  +   I    K    +++D G G+  ++I    +   T+K
Sbjct: 274 VIENLCKNAVDAMGGKIGS--ITLRIEETDKRAIVEVSDTGKGIKKKDIRNVFRPGFTTK 331


>gi|271963334|ref|YP_003337530.1| hypothetical protein Sros_1797 [Streptosporangium roseum DSM 43021]
 gi|270506509|gb|ACZ84787.1| hypothetical protein Sros_1797 [Streptosporangium roseum DSM 43021]
          Length = 950

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 16  AGEIIERPSIAIKELIENSL-----DAESSRVET---VIAGGGKSFFQITDNGFGMTSEE 67
           AG  +      + EL+EN++     D   SRV      I GGG     +TD G GM  EE
Sbjct: 556 AGPAVSDVVHLLAELVENAVSFSPKD---SRVVVSSSRIDGGGV-MISVTDQGIGMVQEE 611

Query: 68  IPMAVQRHC 76
           +  A  R  
Sbjct: 612 LSQANWRLA 620


>gi|212710647|ref|ZP_03318775.1| hypothetical protein PROVALCAL_01713 [Providencia alcalifaciens DSM
           30120]
 gi|212686728|gb|EEB46256.1| hypothetical protein PROVALCAL_01713 [Providencia alcalifaciens DSM
           30120]
          Length = 508

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 18  EIIERPSIAIKELIEN-SLDAESSRVETVIAGGGKSFFQ--ITDNGFGMT 64
            ++      ++EL+ N S  A+++++   +   G    Q  + DNG G+ 
Sbjct: 419 TVLFTLYRLVQELLNNISKHAKATKIHITLNQQG-DSIQLMVDDNGVGIP 467


>gi|167648584|ref|YP_001686247.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
 gi|167351014|gb|ABZ73749.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter sp. K31]
          Length = 559

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTS 78
             + D+G G+  + +    +R  TS
Sbjct: 469 VTVDDDGPGIPPDNLETIFERFYTS 493


>gi|221135258|ref|ZP_03561561.1| DNA gyrase subunit B [Glaciecola sp. HTCC2999]
          Length = 808

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S ++  I   G     ++D+G G+ +E
Sbjct: 44 EVVDNSIDEALAGHCSDIKIKIHTDG--SVAVSDDGRGIPTE 83


>gi|56460311|ref|YP_155592.1| signal transduction histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179321|gb|AAV82043.1| Signal transduction histidine kinase (contains PAS domain)
           [Idiomarina loihiensis L2TR]
          Length = 335

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 19  IIER-----PSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPM 70
           ++ R        AI+ L+ N++DA     E ++     GG     + D+G G+ +E+   
Sbjct: 213 VVLRANQTALVGAIQNLVNNAVDASQPGQEVLLKTDVDGGSWKVSVIDSGCGIPAEKQDS 272

Query: 71  AVQRHCTSK 79
                 T K
Sbjct: 273 VFTPFFTEK 281


>gi|21230633|ref|NP_636550.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769371|ref|YP_244133.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|188992557|ref|YP_001904567.1| Putative two-component system sensor histidine kinase-response
           regulator hybridprotein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21112216|gb|AAM40474.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574703|gb|AAY50113.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|167734317|emb|CAP52527.1| Putative two-component system sensor histidine kinase-response
           regulator hybridprotein [Xanthomonas campestris pv.
           campestris]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G      + D+G G+    + 
Sbjct: 397 LENVVLNLVINARDALQGHGTIRIQSAPHTAYNDPELEDGDYVAVNVIDDGSGIDPAILS 456

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 457 QVFEPFFTTKPIGEGTGLGLSMTYGF 482


>gi|323697691|ref|ZP_08109603.1| CheA signal transduction histidine kinase [Desulfovibrio sp. ND132]
 gi|323457623|gb|EGB13488.1| CheA signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 754

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 25/88 (28%)

Query: 4   RKLSEKIINQIA---AG-------EIIERPSIAIKELIENSLDAE--------SS----- 40
           R LS  +  QI    +G        +IER    +  L+ NS+D          +      
Sbjct: 447 RDLSGDLGKQITLSTSGAETELDKTVIERLGDPLVHLLRNSIDHGIELPQERVAKGKPPQ 506

Query: 41  -RVETVIA-GGGKSFFQITDNGFGMTSE 66
             +       GG+   +ITD+G GM+SE
Sbjct: 507 GNIMLSAEHSGGEVLIRITDDGKGMSSE 534


>gi|301166552|emb|CBW26128.1| putative DNA gyrase subunit B [Bacteriovorax marinus SJ]
          Length = 715

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 26  AIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           AI+E+++N +D       + +   ++  GKS   + DNG G   E++P       T SK 
Sbjct: 68  AIEEILDNCIDEYYRGHVTEIHCELSEDGKS-VMVEDNGIGFPIEKVPQVYSEFRTGSKF 126

Query: 81  SDD-----FSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQN--NTGAQIAISGEKISSVR 132
            D+          T G  G    +    S    +  R   +             K+   +
Sbjct: 127 KDEETDEKGFLHRTLGQNGLGAAATCLTSDEFKVRVRHYNSKKEQTYTFIDGALKVKKTK 186

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
           P      + V V      +       K++ V+  L+   I  +A   P ++F F+  K +
Sbjct: 187 PKPFKGHSGVRVE-----LKLSKEVYKNDVVDEELLRKRIIDLAYNNPGLTFYFNKEKYH 241

Query: 193 RYK 195
             K
Sbjct: 242 YKK 244


>gi|300744318|ref|ZP_07073337.1| sensor histidine kinase SenX3 [Rothia dentocariosa M567]
 gi|300380043|gb|EFJ76607.1| sensor histidine kinase SenX3 [Rothia dentocariosa M567]
          Length = 385

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           LIEN++     D   +RV+  +    ++    +TD G G++ E+     +R  
Sbjct: 270 LIENAVRYSPED---TRVDVTVETSHENLLISVTDQGSGISEEDQKRIFERFY 319


>gi|298506421|gb|ADI85144.1| heat shock protein Hsp90 [Geobacter sulfurreducens KN400]
          Length = 650

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 43/160 (26%)

Query: 19  IIERPSI----AIKELIENSLDA----------ESSRVE------TVI---AGGGKSFFQ 55
           +I          ++ELI N+ DA           ++ +E        +      G     
Sbjct: 19  VIHSLYSNKDIFLRELISNASDAIDKVLFESHQNAAVIEGEPEGKIKLIPDKDAGT--IT 76

Query: 56  ITDNGFGMTSEEIPMAV--QRHCTSK----------ISDDFSNIHTF--GFRGEALPSIG 101
           I DNG GMT EE+   +    H  +K          +++    I  F  GF      S  
Sbjct: 77  IRDNGVGMTQEEVEKNIGTIAHSGTKAFLANLKEQNVAEHPELIGQFGVGF----YASFM 132

Query: 102 AVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTI 141
               +TL++R    +  A +        +         T 
Sbjct: 133 VADRVTLVTRRAGQDKAAGVRWESTGDGTYTVEECTKETR 172


>gi|163256311|dbj|BAF95666.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3F]
          Length = 275

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 1  VDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 38


>gi|163256305|dbj|BAF95663.1| DNA gyrase subunit B [Bradyrhizobium sp. KO3C]
          Length = 273

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 1  VDNAIDEALAGHATRVDVVLNAD--NSVTVRDDGRGIPVD 38


>gi|153939952|ref|YP_001390322.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935848|gb|ABS41346.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295318413|gb|ADF98790.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + NS D    +++  +    K    + DNG G+  EE+     R+ 
Sbjct: 385 VHNSED---VKIDVTLKKQDKISIIVEDNGRGIKGEELNRIFDRYY 427


>gi|153807640|ref|ZP_01960308.1| hypothetical protein BACCAC_01922 [Bacteroides caccae ATCC 43185]
 gi|149130002|gb|EDM21214.1| hypothetical protein BACCAC_01922 [Bacteroides caccae ATCC 43185]
          Length = 1346

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+L    D  S  +   I        ++ DNG G+ + EI    +R+  SK
Sbjct: 942 LISNALKFTNDNGSVELSL-IKNNEMFIIRLIDNGIGIEAGEIDRIFERYYQSK 994


>gi|70734049|ref|YP_257689.1| DNA topoisomerase IV subunit B [Pseudomonas fluorescens Pf-5]
 gi|68348348|gb|AAY95954.1| DNA topoisomerase IV, B subunit [Pseudomonas fluorescens Pf-5]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  ++ ++        +++D+G GM  +
Sbjct: 34 TRPNHLAQEVIDNSVDEALAGHAKSIQVILHAD--HSLEVSDDGRGMPVD 81


>gi|108758078|ref|YP_628729.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|54873443|gb|AAV40993.1| RedC [Myxococcus xanthus]
 gi|108461958|gb|ABF87143.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 469

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 30  LIENSLDA---ESSRVETVIAGGG---KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A     + V +V+A GG       ++ D+G G+  E +P   +   T+K
Sbjct: 367 LVQNAVEAMPVGRNGVVSVVAEGGDASPWRIRVMDDGAGIPPEVLPKIFEPLFTTK 422


>gi|150391272|ref|YP_001321321.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149951134|gb|ABR49662.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 533

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 20  IERPSIAIKELIENSLD-----AESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMA 71
           +E P +A++ L+EN++      A   +V   I     G   F ++ DNG G+  E +   
Sbjct: 417 VEIPFMALQLLVENAITHGFESAG-KKVTITIRGRSQGKYVFLRVIDNGSGIKEEVLKRL 475

Query: 72  VQRHCTSK 79
             +  T K
Sbjct: 476 FLKDSTIK 483


>gi|332991512|gb|AEF01567.1| DNA gyrase subunit B [Alteromonas sp. SN2]
          Length = 806

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 71/253 (28%), Gaps = 37/253 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S +   I   G     + D+G G+      EE   A +      H
Sbjct: 44  EVVDNSIDEALAGHCSEIVVQIHTDG--SVSVYDDGRGIPTAVHEEEGVSAAEVIMTVLH 101

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L  R        +      +  
Sbjct: 102 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----KLKLRIRREGKTHEQEYQHGVPQAP 155

Query: 130 SVRPVAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFST 188
                  +  GT V             +   +     +++   +R ++     +S     
Sbjct: 156 LAVIGETDKTGTSVRFW-------PSSDTFTNTLFHYDILAKRLRELSFLNSGISIRLKD 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            +  +         G     +  +  +    +    +    +           +N G   
Sbjct: 209 ERDGKED--HFMYEGGIKAFVEYLNQKKTPVHQKVFHFTHEQEDGISVEVSMQWNDGFQE 266

Query: 249 QFYVFINGRTVQD 261
             Y F N    +D
Sbjct: 267 NIYCFTNNIPQRD 279


>gi|332290135|ref|YP_004420987.1| sensor protein QseC [Gallibacterium anatis UMN179]
 gi|330433031|gb|AEC18090.1| sensor protein QseC [Gallibacterium anatis UMN179]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 19/84 (22%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSL---------DAESSRVETV-IAGGGKS 52
           I  +SE+ +  I  GE        IK L+EN++         D     +    +      
Sbjct: 327 IGVISEQDVE-ICIGE--TDLFTIIKILLENAIVYAPQESLVD-----LSVEQLQDDKVK 378

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC 76
              + DNG G+  EE    ++   
Sbjct: 379 LI-VEDNGNGIAEEEREKVLKPFY 401


>gi|300863566|ref|ZP_07108512.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300338433|emb|CBN53654.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1026

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 40/108 (37%)

Query: 10  IINQIAAGEIIERPS-IAIKE-----LIE---------------NSLDA----ES----- 39
           + ++I A    +RP+   IKE     L+E               N+LDA    ++     
Sbjct: 875 LQHRIKAKS--DRPAINIIKEYGKLPLVECSAGQLNQVFMNILSNALDALDERDAQRSIN 932

Query: 40  ------SRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                 S +     ++       +I DNG G+    +        T+K
Sbjct: 933 EMKQMPSSISIYTQVSNANYVEIRIIDNGPGIQKSVLERLFDPFFTTK 980


>gi|299133795|ref|ZP_07026989.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2]
 gi|298591631|gb|EFI51832.1| DNA topoisomerase IV, B subunit [Afipia sp. 1NLS2]
          Length = 689

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +S +E  +   G  +  + DNG G+  +
Sbjct: 82  EVIDNSMDEALAGHASFIEVELGADG--YLTVIDNGRGIPVD 121


>gi|294497139|ref|YP_003560839.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294347076|gb|ADE67405.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++      VE  I         +TD G G+  E++    +R 
Sbjct: 353 LLDNAIKYSEKAVEVTITRSKSFMITVTDQGIGIPKEDLSNVYERF 398


>gi|260890805|ref|ZP_05902068.1| sensor histidine kinase [Leptotrichia hofstadii F0254]
 gi|260859358|gb|EEX73858.1| sensor histidine kinase [Leptotrichia hofstadii F0254]
          Length = 469

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 26  AIKELIENSLDAES------SRVETVIAGGG-KSFFQITDNGFGMTSEEIPM 70
            + EL+EN +   +        +   +  G  KS   I+D+G GM  ++   
Sbjct: 382 IVNELVENCI-KHAFKGRSRGHITIKVKSGEMKSRIFISDDGIGMDEKDFEK 432


>gi|255324242|ref|ZP_05365364.1| sensor histidine kinase SenX3 [Corynebacterium tuberculostearicum
           SK141]
 gi|255298758|gb|EET78053.1| sensor histidine kinase SenX3 [Corynebacterium tuberculostearicum
           SK141]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +  GG    ++TD G G+  ++     +R 
Sbjct: 296 KVVDGGVVLIRVTDRGIGIAPDDQKRVFERF 326


>gi|237737805|ref|ZP_04568286.1| sensory transduction protein kinase [Fusobacterium mortiferum ATCC
           9817]
 gi|229419685|gb|EEO34732.1| sensory transduction protein kinase [Fusobacterium mortiferum ATCC
           9817]
          Length = 450

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           LIEN++    D     +   I         I DNG G++ E +     R 
Sbjct: 353 LIENAIKYGRD---KEIYINIRENKNIIVDIIDNGEGISQENLKHIFDRF 399


>gi|229019900|ref|ZP_04176697.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
 gi|228741390|gb|EEL91593.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   + +   K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|229072176|ref|ZP_04205384.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
 gi|228710914|gb|EEL62881.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ ++ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADTLPYIFERFY 429


>gi|311740983|ref|ZP_07714808.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303785|gb|EFQ79863.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 420

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +  GG    ++TD G G+  ++     +R 
Sbjct: 296 KVVDGGVVLIRVTDRGIGIAPDDQKRVFERF 326


>gi|227820415|ref|YP_002824386.1| DctB, C4-dicarboxylate transport sensor protein [Sinorhizobium
           fredii NGR234]
 gi|227339414|gb|ACP23633.1| DctB, C4-dicarboxylate transport sensor protein [Sinorhizobium
           fredii NGR234]
          Length = 636

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 25/91 (27%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSL-------DAESSRVETVIAG-- 48
           IR  L       + N+I       R    +  L++N+L       DA   ++        
Sbjct: 517 IRIELPADGLKALGNRI-------RLEQVLINLLQNALEAIGDRDDA---QIRVRCEETA 566

Query: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           GG +   + DNG G+ +           TSK
Sbjct: 567 GGIAL-TVADNGPGIPAAIRDELFTPFNTSK 596


>gi|134102216|ref|YP_001107877.1| two-component system sensor kinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003821|ref|ZP_06561794.1| two-component system sensor kinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914839|emb|CAM04952.1| two-component system sensor kinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 537

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++    DA   +V       G     ++ DNG G+  E      QR  ++K
Sbjct: 438 LIDNAVEATQDAADPKVVVTARRTGAELLIRVADNGPGIDPEAAQRVFQRGWSTK 492


>gi|126697163|ref|YP_001092049.1| DNA gyrase subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|126544206|gb|ABO18448.1| DNA gyrase, subunit B [Prochlorococcus marinus str. MIT 9301]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +E V+   G +    +DNG G+ ++
Sbjct: 50 EVVDNSVDEALAGHCDHIEIVLRADGSALI--SDNGRGIPTD 89


>gi|146427|gb|AAA24003.1| hydH [Escherichia coli]
          Length = 137

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 21 ERPSIAIKELIENSLDAESSR--VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
          +R +  +  L  N++ A      +       G     +TD+G G+ ++++      + T+
Sbjct: 28 DRLTQVVLNLYLNAIQAIGQHGVISVTATKAGGVKISVTDSGKGIAADQLDAIFTPYFTT 87

Query: 79 K 79
          K
Sbjct: 88 K 88


>gi|70732200|ref|YP_261956.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346499|gb|AAY94105.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 21  ERPSIAIKELIENSLDA-ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
            R    +  LI N+LDA ++       +E  ++  GK   ++ DNG G+  E      + 
Sbjct: 519 TRLEQILVNLIGNALDAMQAQPAPQLWLEGELSE-GKYRLRVRDNGHGIDLEARKHLFEP 577

Query: 75  HCTSK 79
             T+K
Sbjct: 578 FFTTK 582


>gi|121602566|ref|YP_989184.1| DNA topoisomerase IV subunit B [Bartonella bacilliformis KC583]
 gi|4033401|sp|P94281|GYRB_BARBK RecName: Full=DNA gyrase subunit B
 gi|1766064|gb|AAC71079.1| GyrB [Bartonella bacilliformis]
 gi|120614743|gb|ABM45344.1| DNA topoisomerase IV, B subunit [Bartonella bacilliformis KC583]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  +  ++  +     ++  +TDNG G+  E  P
Sbjct: 89  EIIDNAMDEAVAGYADLIDITLDSN--NYLTVTDNGRGIPIENHP 131


>gi|332187603|ref|ZP_08389339.1| HAMP domain protein [Sphingomonas sp. S17]
 gi|332012351|gb|EGI54420.1| HAMP domain protein [Sphingomonas sp. S17]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 1   MKIRK-LSEKIINQIAAGEIIER--PSIAIKELIENSLDAESSRVETVIAGGGKSFFQIT 57
           M IR    + ++        + R     AI  L++N+L   S  V   +  G      + 
Sbjct: 303 MTIRADAPDTLVAL------VHRELLGQAIANLVDNALKYGSGLVTIRVEPGPV--LIVA 354

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
           D+G G+  E    A++R              T    G  L    AV+HL
Sbjct: 355 DDGPGIPPERREEALKRFG------RLDAARTESGAGLGLSLASAVAHL 397


>gi|294010702|ref|YP_003544162.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292674032|dbj|BAI95550.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 13/54 (24%)

Query: 30  LIENSL------DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+EN+L      D    R+E    I  G      + DNG G+ +E  P A++R 
Sbjct: 377 LVENALYYAEGGD----RIELSAAIENGDL-LIAVADNGPGIPAESRPAALRRF 425


>gi|291531285|emb|CBK96870.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [Eubacterium siraeum 70/3]
          Length = 507

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
            A+ ++I+NS+ A++  +            +  I D+  GM    +  A+      K   
Sbjct: 27  TAVADIIDNSISADAKNIWIDFPSYSSDNLYITILDDAIGMDDAALFNAM------KYGS 80

Query: 83  --DFSNIHTFGFRGEAL--PSIGAVSHLTLMSRPPQNNTGAQIAIS 124
             D       G  G  L   S+     LT+MS+   +    +  + 
Sbjct: 81  ERDEYGEKDLGRFGVGLKSASLSQCRTLTVMSKFNGDIHAYRWDLD 126


>gi|291458738|ref|ZP_06598128.1| putative sensor histidine kinase [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418655|gb|EFE92374.1| putative sensor histidine kinase [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 30  LIENSLD-AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQR 74
           L++N +  +++  V  ++    G     + DNG G+  E++     R
Sbjct: 208 LLQNVITHSQADTVTVLLEKQEGSMRLSVADNGVGIGKEDLKQVFSR 254


>gi|239835150|ref|ZP_04683477.1| C4-dicarboxylate transport sensor protein dctB [Ochrobactrum
           intermedium LMG 3301]
 gi|239821289|gb|EEQ92859.1| C4-dicarboxylate transport sensor protein dctB [Ochrobactrum
           intermedium LMG 3301]
          Length = 610

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 12/72 (16%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEE 67
           +I + +++         L++N+LDA ++     V   I   G +    + DNG G+  + 
Sbjct: 496 RIRSEQVLVN-------LLQNALDAVATSHNPHVAFSIREEGDQISLVVDDNGEGIEPKL 548

Query: 68  IPMAVQRHCTSK 79
                    T K
Sbjct: 549 ADEIFSPFVTGK 560


>gi|163759096|ref|ZP_02166182.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283500|gb|EDQ33785.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 472

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 9   KIINQIAAGEII----ERPSIAIKELIENSL----DAESSRVETVI-AGGGKSFFQITDN 59
            +I +IA   +I    E  + A+  LI+N++    D  S R++  +   GG+ +  +TDN
Sbjct: 342 SLIAEIAPDVVINGNRELLAQALSNLIDNAIKYVGDVPSPRIKVSLAREGGELWLSVTDN 401

Query: 60  GFGMTSEEIPMAVQRH 75
           G G+ ++     V+R 
Sbjct: 402 GPGVPADRREDVVKRF 417


>gi|119387111|ref|YP_918166.1| histidine kinase [Paracoccus denitrificans PD1222]
 gi|119377706|gb|ABL72470.1| histidine kinase [Paracoccus denitrificans PD1222]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA---ESSRVETVIA---GGGKSFFQITDN 59
           L       + AG    R    +  LI N++DA    + R    ++    GG+   ++ D 
Sbjct: 499 LPP-----LRAGP--TRLQQVLVNLITNAVDAVEGGADR-RITLSARAEGGRVAIRVRDR 550

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+ +           T+K
Sbjct: 551 GPGVPAAIAARIFDPFFTTK 570


>gi|84490127|ref|YP_448359.1| DNA topoisomerase VI subunit B [Methanosphaera stadtmanae DSM 3091]
 gi|84373446|gb|ABC57716.1| type II DNA topoisomerase VI, subunit B [Methanosphaera stadtmanae
           DSM 3091]
          Length = 554

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 30/118 (25%)

Query: 20  IERPSIAIKELIENSLDAESSR------VETVIAGGGKS--FFQITDNGFGMTSEEIPMA 71
           I   +I   ELI NSLDA          +   +   GK     +  DNG G+  + I   
Sbjct: 34  IRSLTIVFHELITNSLDA-CEEVGILPDITIELKRLGKDHYLLKHADNGPGIPEDYITKV 92

Query: 72  -VQRHCTSKISDDFSNIHT-----FGFRGEALPSIGAVSHLT------LMSRPPQNNT 117
             Q    SK      NI +      G  G  L     +S +T      + SR    N 
Sbjct: 93  YCQMFAGSKFR----NIQSRGQQGLGCSGCVL-----LSQMTTGQPVKIRSRYKDGNE 141


>gi|78213142|ref|YP_381921.1| histidine kinase [Synechococcus sp. CC9605]
 gi|78197601|gb|ABB35366.1| histidine kinase [Synechococcus sp. CC9605]
          Length = 376

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 22  RPSIAIKELIENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R   A+  L++N+L    D   S ++  +   GG     I D+G G++  ++    QR  
Sbjct: 265 RLHRAVLNLLDNALRYSPD--ESSIDVSVRQSGGWWLLSIRDHGPGLSEADLRRMFQRFY 322


>gi|17549772|ref|NP_523112.1| transmembrane two-component sensor kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17432027|emb|CAD18704.1| probable transmembrane two-component sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 438

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 19/87 (21%)

Query: 7   SEKIINQIAAGEIIER-PSIA----------IKELIENSL---DAESSRVETVIA---GG 49
              +  +I  G  +E  P+            +  L++N+L      + RV+        G
Sbjct: 304 PAALQKRIDLGIAVESQPASVGGNADALRVLLVNLVDNALCYCPEGA-RVDVSTGHAPDG 362

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           G     + DNG G+ + E    + R  
Sbjct: 363 GAQLI-VEDNGPGIPAAERERVLDRFY 388


>gi|323484278|ref|ZP_08089646.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum
          WAL-14163]
 gi|323694735|ref|ZP_08108893.1| B subunit [Clostridium symbiosum WAL-14673]
 gi|323402430|gb|EGA94760.1| hypothetical protein HMPREF9474_01397 [Clostridium symbiosum
          WAL-14163]
 gi|323501172|gb|EGB17076.1| B subunit [Clostridium symbiosum WAL-14673]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   +   G     + DNG G+  E
Sbjct: 42 EIVDNSVDEHLAGECNDIWVTLEADG--SCTVRDNGRGIPVE 81


>gi|323155547|gb|EFZ41724.1| sensor zraS domain protein [Escherichia coli EPECa14]
          Length = 180

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 70  DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 129

Query: 78  SK 79
           +K
Sbjct: 130 TK 131


>gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 1349

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R+   +    G    Q+TD+G G+ + ++P   +R  
Sbjct: 477 RIRVTLREDEGHFTLQVTDSGTGIPAADLPRVFERFH 513


>gi|293474311|ref|ZP_06664720.1| conserved hypothetical protein [Escherichia coli B088]
 gi|291321341|gb|EFE60782.1| conserved hypothetical protein [Escherichia coli B088]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 101 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 160

Query: 78  SK 79
           +K
Sbjct: 161 TK 162


>gi|260858113|ref|YP_003232004.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O26:H11 str. 11368]
 gi|260870714|ref|YP_003237116.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O111:H- str. 11128]
 gi|257756762|dbj|BAI28264.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O26:H11 str. 11368]
 gi|257767070|dbj|BAI38565.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O111:H- str. 11128]
 gi|323177559|gb|EFZ63144.1| sensor protein zraS [Escherichia coli 1180]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|256021676|ref|ZP_05435541.1| sensor protein ZraS [Shigella sp. D9]
 gi|332282919|ref|ZP_08395332.1| sensor protein ZraS [Shigella sp. D9]
 gi|332105271|gb|EGJ08617.1| sensor protein ZraS [Shigella sp. D9]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|255534205|ref|YP_003094576.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340401|gb|ACU06514.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
          Length = 747

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 21  ERPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ER    +  L+ N++     A S  VE  +   G+    + D G GM + E+    +R  
Sbjct: 635 ERLKQVLTNLLTNAIKYSPKANSVNVELWVED-GRGIVSVEDFGIGMEASELGKIFERFY 693


>gi|241206955|ref|YP_002978051.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii
          WSM1325]
 gi|240860845|gb|ACS58512.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii
          WSM1325]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|289937582|ref|YP_003482184.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533273|gb|ADD07622.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 786

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 41  RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQ---RHCTS 78
           R++      GG+    ++D+G G+  +      +   R  TS
Sbjct: 702 RIDIDAERVGGQWQITVSDHGIGINPDNQDRVFEVFQRLHTS 743


>gi|239627943|ref|ZP_04670974.1| histidine kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518089|gb|EEQ57955.1| histidine kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 185

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS  A +S V  ++            I D+G GMT E++        T
Sbjct: 14 ENSTRAGASLVTILVTADTADDKLTIVIADDGCGMTEEQVAHVTDPFFT 62


>gi|218680313|ref|ZP_03528210.1| DNA gyrase subunit B [Rhizobium etli CIAT 894]
          Length = 421

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 27 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 68


>gi|218697711|ref|YP_002405378.1| sensor protein ZraS [Escherichia coli 55989]
 gi|218354443|emb|CAV01258.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli 55989]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|209551517|ref|YP_002283434.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. trifolii
          WSM2304]
 gi|209537273|gb|ACI57208.1| DNA gyrase, B subunit [Rhizobium leguminosarum bv. trifolii
          WSM2304]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|116249778|ref|YP_765616.1| DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254426|emb|CAK05500.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae
          3841]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|19880272|gb|AAM00282.1|AF364330_2 photoreceptor-histidine kinase BphP [Pseudomonas syringae]
          Length = 744

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
           ER    +  LI N++  + +    R+       G      + D+G G+  E++P   +R+
Sbjct: 638 ERLFQVLSNLIGNAI--KFTPKLGRIGVAAMSNGDEVVFTVRDSGEGIPPEQLPHIFERY 695

Query: 76  CTSK 79
            T K
Sbjct: 696 WTVK 699


>gi|86355681|ref|YP_467573.1| DNA gyrase subunit B [Rhizobium etli CFN 42]
 gi|86279783|gb|ABC88846.1| DNA gyrase subunit B protein [Rhizobium etli CFN 42]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|61676016|gb|AAX51673.1| gyrase subunit B [Simkania negevensis]
          Length = 284

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S +  +I   G     + DNG G+ 
Sbjct: 17 VYEVVDNSIDEAMAGHCSEIYVIINADG--SITLEDNGRGIP 56


>gi|61676002|gb|AAX51666.1| gyrase subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 219

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S +  +I   G     + DNG G+ 
Sbjct: 17 VYEVVDNSIDEAMAGHCSEIYVIINADG--SITLEDNGRGIP 56


>gi|56419479|ref|YP_146797.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261419163|ref|YP_003252845.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297530867|ref|YP_003672142.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|319765980|ref|YP_004131481.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
 gi|56379321|dbj|BAD75229.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261375620|gb|ACX78363.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297254119|gb|ADI27565.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|317110846|gb|ADU93338.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
          Length = 738

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 42  VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +   I   G      ITD G G+  ++I    +   T+K
Sbjct: 649 ITVRITRAGCYVRISITDQGCGIPKDKIKKLGEPFYTTK 687


>gi|18916405|dbj|BAB85499.1| DNA gyrase subunit B [Rhizobium leguminosarum]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 12 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 53


>gi|15963765|ref|NP_384118.1| DNA gyrase subunit B [Sinorhizobium meliloti 1021]
 gi|307302568|ref|ZP_07582325.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C]
 gi|307316101|ref|ZP_07595545.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83]
 gi|15072940|emb|CAC41399.1| Probable DNA gyrase subunit B [Sinorhizobium meliloti 1021]
 gi|306897941|gb|EFN28683.1| DNA gyrase, B subunit [Sinorhizobium meliloti AK83]
 gi|306903238|gb|EFN33828.1| DNA gyrase, B subunit [Sinorhizobium meliloti BL225C]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|157163472|ref|YP_001460790.1| sensor protein ZraS [Escherichia coli HS]
 gi|191168656|ref|ZP_03030437.1| sensor histidine kinase ZraS [Escherichia coli B7A]
 gi|193066405|ref|ZP_03047452.1| sensor histidine kinase ZraS [Escherichia coli E22]
 gi|194429973|ref|ZP_03062482.1| sensor histidine kinase ZraS [Escherichia coli B171]
 gi|209921483|ref|YP_002295567.1| sensor protein ZraS [Escherichia coli SE11]
 gi|218556558|ref|YP_002389472.1| sensor protein ZraS [Escherichia coli IAI1]
 gi|260846803|ref|YP_003224581.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O103:H2 str. 12009]
 gi|300819815|ref|ZP_07100002.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300824616|ref|ZP_07104724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|307315023|ref|ZP_07594609.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli W]
 gi|309797708|ref|ZP_07692094.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312974210|ref|ZP_07788380.1| sensor protein zraS [Escherichia coli 1827-70]
 gi|331670858|ref|ZP_08371693.1| sensor protein ZraS [Escherichia coli TA271]
 gi|331680127|ref|ZP_08380788.1| sensor protein ZraS [Escherichia coli H591]
 gi|157069152|gb|ABV08407.1| sensor histidine kinase ZraS [Escherichia coli HS]
 gi|190901296|gb|EDV61064.1| sensor histidine kinase ZraS [Escherichia coli B7A]
 gi|192925929|gb|EDV80576.1| sensor histidine kinase ZraS [Escherichia coli E22]
 gi|194412002|gb|EDX28315.1| sensor histidine kinase ZraS [Escherichia coli B171]
 gi|209914742|dbj|BAG79816.1| two-component sensor kinase [Escherichia coli SE11]
 gi|218363327|emb|CAR00977.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli IAI1]
 gi|257761950|dbj|BAI33447.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O103:H2 str. 12009]
 gi|300522865|gb|EFK43934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300527636|gb|EFK48698.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|306905528|gb|EFN36061.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli W]
 gi|308118720|gb|EFO55982.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|310331377|gb|EFP98642.1| sensor protein zraS [Escherichia coli 1827-70]
 gi|315063329|gb|ADT77656.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli W]
 gi|320200156|gb|EFW74745.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli EC4100B]
 gi|323161304|gb|EFZ47213.1| sensor protein zraS [Escherichia coli E128010]
 gi|323174484|gb|EFZ60109.1| sensor protein zraS [Escherichia coli LT-68]
 gi|323182103|gb|EFZ67513.1| sensor protein zraS [Escherichia coli 1357]
 gi|323380607|gb|ADX52875.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli KO11]
 gi|323943608|gb|EGB39716.1| hsp90-like protein [Escherichia coli H120]
 gi|324017343|gb|EGB86562.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324115435|gb|EGC09380.1| hsp90-like protein [Escherichia coli E1167]
 gi|331061946|gb|EGI33870.1| sensor protein ZraS [Escherichia coli TA271]
 gi|331072282|gb|EGI43616.1| sensor protein ZraS [Escherichia coli H591]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|157157582|ref|YP_001465499.1| sensor protein ZraS [Escherichia coli E24377A]
 gi|300925873|ref|ZP_07141716.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301325712|ref|ZP_07219171.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|157079612|gb|ABV19320.1| sensor histidine kinase ZraS [Escherichia coli E24377A]
 gi|300418063|gb|EFK01374.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300847501|gb|EFK75261.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|325291465|ref|YP_004277329.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
 gi|325059318|gb|ADY63009.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADLVTVTLNADG--SVTVTDNGRGIPTD 91


>gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum
           seropedicae SmR1]
 gi|300072765|gb|ADJ62164.1| two component transmembrane sensor histidine kinase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 9/55 (16%)

Query: 30  LIENSL-----DAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L     D  + RV        GGG +  ++ DNG G+   E     +R  
Sbjct: 272 LLDNALHYTPHD-GNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERANVFERFY 325


>gi|300789294|ref|YP_003769585.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299798808|gb|ADJ49183.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 731

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIP 69
           AA +++   +    EL+EN++ +     + V+       GG    ++ D G GMT E++ 
Sbjct: 453 AAADVVHILA----ELLENAIRSSPPEEQVVLTADRGFDGGL-LIEVVDVGLGMTREDLE 507


>gi|293603881|ref|ZP_06686296.1| sensor histidine kinase [Achromobacter piechaudii ATCC 43553]
 gi|292817718|gb|EFF76784.1| sensor histidine kinase [Achromobacter piechaudii ATCC 43553]
          Length = 467

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 28  KELIENSLDAESS---RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           K LI+N+L    S    ++  +    GG     + D G G+   +   A +R  
Sbjct: 364 KNLIDNALRHGGSEDGHIDVTLDAHEGG-WRITVADQGPGIPPAQANTAFERFA 416


>gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 898

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 2   KIR---KLSEKIINQIAAGEIIERPSIAIKELIENSLD----AESSRVETVI---AGGGK 51
           +IR   +L E +  +I AG++ ER    +  ++ N++     A    +   +      G 
Sbjct: 480 RIRLSCRLPEHVTAKIDAGKV-ER---VVSNILSNAVKFTPVAG--EINVELVVDTPQGT 533

Query: 52  SFFQITDNGFGMTSEEIPMAVQRHC 76
           +   +T+ G G+   ++P   +R  
Sbjct: 534 ATLSVTNTGKGIAEGDLPHIFERFY 558


>gi|323526440|ref|YP_004228593.1| ATP-binding region ATPase domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323383442|gb|ADX55533.1| ATP-binding region ATPase domain protein [Burkholderia sp.
           CCGE1001]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA---ESSRV----ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               +  L+ N+LDA   E+ RV           G+  F I D+G G+  E +    +  
Sbjct: 533 LQQVVVNLLGNALDAVRDEAKRVIVLDAVESDDTGRVLFSIADSGTGIAQEVLDHLFEPF 592

Query: 76  CTSK 79
            T+K
Sbjct: 593 VTTK 596


>gi|255324955|ref|ZP_05366063.1| two-component system sensor kinase TcsS4 [Corynebacterium
           tuberculostearicum SK141]
 gi|255298015|gb|EET77324.1| two-component system sensor kinase TcsS4 [Corynebacterium
           tuberculostearicum SK141]
          Length = 375

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDGEGIPPDQLGHIFERFY 315


>gi|325983449|ref|YP_004295851.1| integral membrane sensor signal transduction histidine kinase
           [Nitrosomonas sp. AL212]
 gi|325532968|gb|ADZ27689.1| integral membrane sensor signal transduction histidine kinase
           [Nitrosomonas sp. AL212]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+ DA S  +E            +I D+G G+++E +  A +   +SK
Sbjct: 325 LLNNAADASSECIEISSHWDNRLLHLEIIDDGKGLSAEALQRAGEAFFSSK 375


>gi|159184123|ref|NP_353052.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
 gi|159139460|gb|AAK85837.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADLVTVTLNADG--SVTVTDNGRGIPTD 91


>gi|111020129|ref|YP_703101.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
 gi|110819659|gb|ABG94943.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
          Length = 472

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 26  AIKELIENSLD--AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            ++ LI+N++   A +  VE  +  G  +   ++D+G G+   +     +R 
Sbjct: 361 VMRNLIDNAVRFAAHAVHVEVSL-RGNTAQITVSDDGPGIPQPDRARVFERF 411


>gi|71905867|ref|YP_283454.1| PAS [Dechloromonas aromatica RCB]
 gi|71845488|gb|AAZ44984.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK---ISDDFSNIHTFGF 92
             ++ DNG GM +  +  A +   T+K   +         +GF
Sbjct: 466 LIEVADNGCGMDAATLSRACEPFFTTKRFGLGSGLGLAMAYGF 508


>gi|27544670|dbj|BAC55030.1| DNA gyrase B subunit [Legionella erythra]
          Length = 299

 Score = 41.6 bits (96), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 14 EVVDNSIDEALAGYCKEIFVTIHAD--ESITVKDDGRGIPVD 53


>gi|326402177|ref|YP_004282258.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301]
 gi|325049038|dbj|BAJ79376.1| DNA topoisomerase IV subunit B [Acidiphilium multivorum AIU301]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++N++D   A  +S +E  +A G  +   + DNG G+  +
Sbjct: 50 ELLDNAMDEAVAGHASIIEMTLAPG--NLLTVRDNGRGIPVD 89


>gi|325962048|ref|YP_004239954.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468135|gb|ADX71820.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 22  RPSIAIKELIENSLD-AESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             +    EL+ N++  A  +R+   +   G     +++D+G G++SEE   A QR   S
Sbjct: 364 DLAQMAGELLNNAIKYAGRARISVAVRVRGAAVVIEVSDDGPGLSSEERTAATQRFWRS 422


>gi|320326998|gb|EFW83015.1| hypothetical protein PsgRace4_27080 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 807

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II  I    AG        AI EL+ NS+DA+++ +   +   G   F   D+G G
Sbjct: 7  LDPEIIQHIIHSQAG----SIGKAIIELVMNSVDADATALRLTMTKEG---FHCADDGRG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            +  ++     R  T
Sbjct: 60 FASRNDVLRYFGRFGT 75


>gi|291562261|emb|CBL41077.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 42  VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           V   +   G+     I D+G G+  +++P    R  
Sbjct: 391 VWISVEENGEQLKITIRDDGPGILEDDLPHLFDRFY 426


>gi|255015222|ref|ZP_05287348.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 793

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 13/67 (19%)

Query: 20  IERPSIAIKELIENSL----DAESSRVETVIA-------GGGKSFFQITDNGFGMTSEEI 68
           ++R    +  L+ N++    D    ++   I          G     + DNG G+  + +
Sbjct: 397 VQRIQQVLLNLLSNAIKYTPDYG--KITLEIREKPIKNGNYGLFEITVIDNGIGIKPDFL 454

Query: 69  PMAVQRH 75
               +  
Sbjct: 455 HKVFEPF 461


>gi|227821835|ref|YP_002825805.1| DNA topoisomerase IV subunit B [Sinorhizobium fredii NGR234]
 gi|227340834|gb|ACP25052.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234]
          Length = 685

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           E+I+NS+D   A  ++ +E  +   G  F  +TDNG G+  E  P 
Sbjct: 82  EVIDNSMDEAVAGHANFIEVYLDAEG--FLTVTDNGRGIPVENHPK 125


>gi|182414285|ref|YP_001819351.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841499|gb|ACB75751.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 901

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +A G     ++ DNG G+  E +        T+K
Sbjct: 686 LAEGNYVEIEVRDNGSGIAPENLQKIFDPFFTTK 719


>gi|170697993|ref|ZP_02889075.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria IOP40-10]
 gi|170137055|gb|EDT05301.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia ambifaria IOP40-10]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 25/99 (25%)

Query: 2   KIR----KLSEKIINQIAAGEII--ER--PSIAIKELIENSLDA--ES--SRVETVI--- 46
           +IR    +L    +N IA G  +  E       I  L+ N+LDA  ++   R+       
Sbjct: 487 RIRDEGVQLD---VN-IAPGTTVSAESSQLQQVIVNLLGNALDAVHDAPVRRIVIEAAKV 542

Query: 47  ------AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
                    G+  F + D+G G+  + +P   +   T+K
Sbjct: 543 DDANDEDEAGRVRFTVADSGAGIAPDVLPHLFEPFVTTK 581


>gi|170781415|ref|YP_001709747.1| putative integral membrane two-component sensor kinase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155983|emb|CAQ01117.1| putative integral membrane two-component sensor kinase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 544

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           +R +  ++ L+ N+L    +   R++ V+A  G      + D G G++ E+   A  R 
Sbjct: 431 DRLTQVVEALVANALLFTPSG--RIDVVLAREGDDAVISVADTGVGLSEEDQRHAFDRF 487


>gi|86361040|ref|YP_472927.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86285142|gb|ABC94200.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 454

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 30  LIENSLD-AESS-RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  +++  RV   +    G +   + DNG G+   E     +R  
Sbjct: 358 LIDNAIRYSKADGRVTVAVGQENGHAVVTVEDNGPGIPEGEREQVFERFY 407


>gi|56696507|ref|YP_166864.1| sensor histidine kinase [Ruegeria pomeroyi DSS-3]
 gi|56678244|gb|AAV94910.1| sensor histidine kinase [Ruegeria pomeroyi DSS-3]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 15/90 (16%)

Query: 23  PSIAIKELIENSL-----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
            + A+  L++N+L     D   SRV   ++         + DNG G+  E++    +   
Sbjct: 352 LAQALSNLLDNALRYAPAD---SRVSLTVSETDTDIVLAVRDNGPGVPEEDLSRLAEPFV 408

Query: 77  TSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
           T           T G  G  L  + A++ +
Sbjct: 409 T------LDPSRTGGNSGLGLALVAAIARM 432


>gi|148259050|ref|YP_001233177.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5]
 gi|146400731|gb|ABQ29258.1| DNA topoisomerase IV subunit B [Acidiphilium cryptum JF-5]
          Length = 653

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          EL++N++D   A  +S +E  +A G  +   + DNG G+  +
Sbjct: 50 ELLDNAMDEAVAGHASIIEMTLAPG--NLLTVRDNGRGIPVD 89


>gi|172058500|ref|YP_001814960.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991021|gb|ACB61943.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 330

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 26  AIKELIENSL--DAE-SSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            + +L+ N++   A     V    +   GK    I D+G G+   ++P       T
Sbjct: 223 VVLQLLTNAVKYTAGHGHEVYIRAVEQAGKIVLTIEDDGVGIPKRDLPRVFNAFFT 278


>gi|330505519|ref|YP_004382388.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina NK-01]
 gi|328919805|gb|AEB60636.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina NK-01]
          Length = 603

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA---ES--SRVETVIAGGGKSF-FQI 56
           IR L +  +  + AGE   R    +  L+ N+LDA   ++   R+   +    +     +
Sbjct: 467 IRDLPDATLW-VQAGE--TRLRQVLGNLLGNALDALVDKAPPRRIWISVEHQAEHLDLLL 523

Query: 57  TDNGFGMTSEEIPMAVQRHCTSK 79
            DNG G +SE +  A +   T+K
Sbjct: 524 RDNGPGFSSESLARAREPFFTTK 546


>gi|301058488|ref|ZP_07199501.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300447410|gb|EFK11162.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 673

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  G  +  +I D+G G++ +++    +   T K
Sbjct: 457 DVRQGEYAVLRIADDGCGISQKDLERIFEPFYTKK 491


>gi|325674849|ref|ZP_08154536.1| phosphate regulon sensor histidine kinase protein PhoR [Rhodococcus
           equi ATCC 33707]
 gi|325554435|gb|EGD24110.1| phosphate regulon sensor histidine kinase protein PhoR [Rhodococcus
           equi ATCC 33707]
          Length = 464

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 22  RPSIAIKELIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N+LD   AE+  V   +   G     ++ D G G+   +     +R   
Sbjct: 357 RLRQVVGNLVGNALDHTPAEAD-VTVRVGTDGADAVVEVADTGPGLAEGDAARVFERFY- 414

Query: 78  SKISDDFSNIHTFGFRGEALPSIGAV 103
                D S   T G  G  L  + A+
Sbjct: 415 ---RADASRTRTSGGSGLGLSIVAAI 437


>gi|239906598|ref|YP_002953339.1| sensor protein ZraS [Desulfovibrio magneticus RS-1]
 gi|239796464|dbj|BAH75453.1| sensor protein ZraS [Desulfovibrio magneticus RS-1]
          Length = 614

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSR-VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R + A+  L  N++   DA  +  + T +A  G+++ ++TD G G+   E       + 
Sbjct: 498 DRLAQAVLNLCLNAVQAMDAGGTLGLRTGLAPDGRAYLEVTDTGRGIDPAERDRIFDPYY 557

Query: 77  TSK 79
           T+K
Sbjct: 558 TTK 560


>gi|239904878|ref|YP_002951616.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794741|dbj|BAH73730.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 404

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ESSRVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA     R+         G     + D+G G+  E +    +   T+K
Sbjct: 303 LLVNAMDAITGPGRIIITTYQSSKGAVCLSVEDSGCGVPPENVDKLFEPFFTTK 356


>gi|311739316|ref|ZP_07713152.1| two component system sensor kinase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305614|gb|EFQ81681.1| two component system sensor kinase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 370

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDGEGIPPDQLGYIFERFY 315


>gi|227823871|ref|YP_002827844.1| DNA gyrase subunit B [Sinorhizobium fredii NGR234]
 gi|227342873|gb|ACP27091.1| DNA gyrase, subunit B [Sinorhizobium fredii NGR234]
          Length = 811

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADIVTVTLNPDG--SCTVTDNGRGIPTD 91


>gi|255036527|ref|YP_003087148.1| DNA topoisomerase IV subunit B [Dyadobacter fermentans DSM 18053]
 gi|254949283|gb|ACT93983.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Dyadobacter fermentans DSM 18053]
          Length = 623

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 27 IKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          +KE+++NS+D         +E  I+       ++ D G G+    +   V   C SKI+ 
Sbjct: 47 VKEVVDNSIDEHMMGNGKTIEIKISE---HRVEVRDYGRGIP---LGKVVD--CVSKINT 98


>gi|225352771|ref|ZP_03743794.1| hypothetical protein BIFPSEUDO_04401 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156378|gb|EEG69947.1| hypothetical protein BIFPSEUDO_04401 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 527

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 22  RPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           R S  ++ L+ N++D AE   VE  +A   +     + D G GMTSE+      R 
Sbjct: 373 RISRVVRNLLANAIDFAEGKPVEVRLAANQRMVVISVRDYGVGMTSEQCSRMFDRF 428


>gi|124023227|ref|YP_001017534.1| heat shock protein 90 [Prochlorococcus marinus str. MIT 9303]
 gi|123963513|gb|ABM78269.1| heat shock protein HtpG [Prochlorococcus marinus str. MIT 9303]
          Length = 636

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 35/148 (23%)

Query: 27  IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N +DA S R                ++  I    K+   I+DNG GMT++E+  
Sbjct: 32  LRELVSNGVDAISKRRMAAMAGDCAEGEEGVIDIKIDREAKTL-TISDNGIGMTTDEVKK 90

Query: 71  AVQRHCTSKISDDFSNIHT----------FGFRGEALPSIGAVS-HLTLMSRPP-QNNTG 118
            + +   S   D                  GF      S   VS H+ L+++     +  
Sbjct: 91  YINQVAFSSAEDFLEKYKQESDGIIGHFGLGF-----YSSFMVSKHVELVTKSACSESKA 145

Query: 119 AQIAISGEKISSVRPVAMN-PGTIVEVR 145
            + +  G    +++    N  GT V + 
Sbjct: 146 IRWSCDGSPRFNIQEAERNEAGTDVILH 173


>gi|157827616|ref|YP_001496680.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389]
 gi|157802920|gb|ABV79643.1| DNA topoisomerase IV subunit B [Rickettsia bellii OSU 85-389]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A  +S +   +         I+DNG G+  +  P 
Sbjct: 54 VSEVLDNSMDEAVAGFASIITIKMHQD--HSITISDNGRGIPIDNHPK 99


>gi|91205045|ref|YP_537400.1| DNA topoisomerase IV subunit B [Rickettsia bellii RML369-C]
 gi|122990939|sp|Q1RK03|PARE_RICBR RecName: Full=DNA topoisomerase 4 subunit B; AltName:
          Full=Topoisomerase IV subunit B
 gi|91068589|gb|ABE04311.1| DNA topoisomerase IV, B subunit [Rickettsia bellii RML369-C]
          Length = 662

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
          + E+++NS+D   A  +S +   +         I+DNG G+  +  P 
Sbjct: 54 VSEVLDNSMDEAVAGFASIITIKMHQD--HSITISDNGRGIPIDNHPK 99


>gi|78777025|ref|YP_393340.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
 gi|78497565|gb|ABB44105.1| histidine kinase [Sulfurimonas denitrificans DSM 1251]
          Length = 529

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 33  NSLDAESSR-----VETVIAGGGKSFFQIT--DNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           NS DA S +     +E V+    K+  ++   DNG G+  + +P   + + T+K     +
Sbjct: 420 NSKDALSDKEYKRLIEVVVKK-SKNKIRVNIVDNGGGIDEDILPHIFEPYYTTKYKSSGT 478

Query: 86  NIHTF 90
            I  +
Sbjct: 479 GIGLY 483


>gi|33862968|ref|NP_894528.1| heat shock protein 90 [Prochlorococcus marinus str. MIT 9313]
 gi|33634885|emb|CAE20871.1| heat shock protein HtpG [Prochlorococcus marinus str. MIT 9313]
          Length = 636

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 35/148 (23%)

Query: 27  IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N +DA S R                ++  I    K+   I+DNG GMT++E+  
Sbjct: 32  LRELVSNGVDAISKRRMAAIAGDCTEAEEGVIDIKIDREAKTL-TISDNGIGMTTDEVKK 90

Query: 71  AVQRHCTSKISDDFSNIHT----------FGFRGEALPSIGAVS-HLTLMSRPP-QNNTG 118
            + +   S   D                  GF      S   VS H+ L+++     +  
Sbjct: 91  YINQVAFSSAEDFLEKYKQESDGIIGHFGLGF-----YSSFMVSKHVELVTKSACSESKA 145

Query: 119 AQIAISGEKISSVRPVAMN-PGTIVEVR 145
            + +  G    +++    N  GT V + 
Sbjct: 146 IRWSCDGSPRFNIQEAERNEAGTDVILH 173


>gi|159903400|ref|YP_001550744.1| heat shock protein 90 [Prochlorococcus marinus str. MIT 9211]
 gi|159888576|gb|ABX08790.1| heat shock protein HtpG [Prochlorococcus marinus str. MIT 9211]
          Length = 632

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 36/127 (28%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ NS+DA                  + ++   I    K+   I+DNG GMTS+E+ 
Sbjct: 32  LRELVSNSVDAINKRRMAAIAGDCIGEENA-KINIKINRENKTL-TISDNGIGMTSDEVK 89

Query: 70  MAVQRHCTSKISDDFSNIHT----------FGFRGEALPSIGAVSH-LTLMSRPPQNNT- 117
             + +   S   +                  GF      S   V+  + L+++  + ++ 
Sbjct: 90  KYINQVAFSSAEEFLEKYKQEQDGIIGHFGLGF-----YSSFMVAKNVELLTKSAKEDSK 144

Query: 118 GAQIAIS 124
             + +  
Sbjct: 145 AVKWSCD 151


>gi|332665223|ref|YP_004448011.1| integral membrane sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334037|gb|AEE51138.1| integral membrane sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 389

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 26  AIKELIENSLDA--ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L+ N+LD+      ++  +          +TD G G+ S +     Q   T+K
Sbjct: 285 VIENLLRNALDSMDGQGNIQVDVTEEEHMVNIDVTDTGKGIPSSKFKTVFQPGYTTK 341


>gi|329930079|ref|ZP_08283698.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328935338|gb|EGG31813.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 38  ESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            +  +    +     +   I DNG G+  E++P   +R  
Sbjct: 247 GA--IAISFSENALYTEIVIVDNGKGIPKEDLPYIFKRFY 284


>gi|328473713|gb|EGF44548.1| sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 679

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 46  IAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I  G        + D+G G+  E +        T+K
Sbjct: 592 IEEGEIKGAAIHVIDDGCGIKPENLNRIFSPFYTTK 627


>gi|262384672|ref|ZP_06077805.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293653|gb|EEY81588.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 24  SIAIKELIENSLDAESS------RVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRH 75
           +  +  LIEN++            ++ V+     G     ++DNGFG+  +E      + 
Sbjct: 364 ANVLSNLIENAI----KYSGEEVNIDIVVLWNHQGVEL-TVSDNGFGIAPDERRKVFDKF 418

Query: 76  CTS 78
             S
Sbjct: 419 YRS 421


>gi|262275918|ref|ZP_06053727.1| periplasmic sensor signal transduction histidine kinase [Grimontia
           hollisae CIP 101886]
 gi|262219726|gb|EEY71042.1| periplasmic sensor signal transduction histidine kinase [Grimontia
           hollisae CIP 101886]
          Length = 666

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 17/90 (18%)

Query: 6   LSEKIINQIAAGEIIE------RPSIAIKELIENSLDAESSRVE-------TVI---AGG 49
           L E  ++ I  GE +       R       L+ NS+DA S ++          I      
Sbjct: 535 LPEAWVS-IDTGETLSVQANDIRLEQVFVNLLSNSIDAISQKLTTTAFTPHIQITARKNN 593

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           G     I DNG GM +       +   T+K
Sbjct: 594 GNVAICIADNGCGMDTVAQSNVFEPFYTTK 623


>gi|260899677|ref|ZP_05908072.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308109466|gb|EFO47006.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 679

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 46  IAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I  G        + D+G G+  E +        T+K
Sbjct: 592 IEEGEIKGAAIHVIDDGCGIKPENLNRIFSPFYTTK 627


>gi|153837771|ref|ZP_01990438.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
 gi|149748876|gb|EDM59711.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
          Length = 679

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 46  IAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I  G        + D+G G+  E +        T+K
Sbjct: 592 IEEGEIKGAAIHVIDDGCGIKPENLNRIFSPFYTTK 627


>gi|167035338|ref|YP_001670569.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
 gi|166861826|gb|ABZ00234.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  LI N+LDA +++    +       G K   Q+ DNG G+ +E      +  
Sbjct: 518 TRLEQILVNLIGNALDAMAAQPLPELWLEGELQGDKYRLQVRDNGHGIDAEARKHLFEPF 577

Query: 76  CTSK 79
            T+K
Sbjct: 578 FTTK 581


>gi|148553124|ref|YP_001260706.1| hypothetical protein Swit_0197 [Sphingomonas wittichii RW1]
 gi|148498314|gb|ABQ66568.1| hypothetical protein Swit_0197 [Sphingomonas wittichii RW1]
          Length = 1414

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)

Query: 20  IERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++ P   + EL++N+ DA +S     I G     F    NG     E+    ++ H  S 
Sbjct: 49  VQSPRHILSELLQNADDAGASEAHVSIEG---ERFVFEHNG-----EDF---IEAHFASI 97

Query: 80  IS---DDFSNIHTFGFRG 94
                 +   +HT GFRG
Sbjct: 98  CRFGYSNKRALHTIGFRG 115


>gi|28898277|ref|NP_797882.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361872|ref|ZP_05774881.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260878615|ref|ZP_05890970.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260896147|ref|ZP_05904643.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28806494|dbj|BAC59766.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086190|gb|EFO35885.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091183|gb|EFO40878.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308111377|gb|EFO48917.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 679

 Score = 41.6 bits (96), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 46  IAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I  G        + D+G G+  E +        T+K
Sbjct: 592 IEEGEIKGAAIHVIDDGCGIKPENLNRIFSPFYTTK 627


>gi|326793326|ref|YP_004311146.1| DNA gyrase B subunit [Marinomonas mediterranea MMB-1]
 gi|326544090|gb|ADZ89310.1| DNA gyrase, B subunit [Marinomonas mediterranea MMB-1]
          Length = 807

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         ++DNG G+  +
Sbjct: 43 EVVDNSIDEALAGHCDTITVTIHPD--ESVSVSDNGRGIPVD 82


>gi|304439074|ref|ZP_07398993.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
          duerdenii ATCC BAA-1640]
 gi|304372433|gb|EFM26020.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Peptoniphilus
          duerdenii ATCC BAA-1640]
          Length = 637

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D A       +E  I   G     ++DNG G+  E
Sbjct: 43 EVVDNSIDEALQGMCDTIEVTILKDG--SVSVSDNGSGIPVE 82


>gi|303246010|ref|ZP_07332292.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492793|gb|EFL52661.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 403

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA      +         G     + D+G G+  E +    +   T+K
Sbjct: 302 LLVNAMDAIVGPGHIIITTFQEASGAVCLSVEDSGCGVPKENMDKLFEPFFTTK 355


>gi|297621239|ref|YP_003709376.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044]
 gi|297376540|gb|ADI38370.1| DNA gyrase subunit B [Waddlia chondrophila WSU 86-1044]
          Length = 822

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   S +  +I   G     + DNG G+ 
Sbjct: 39 VYEVVDNSIDEAMAGHCSEIYVIINADG--SITLEDNGRGIP 78


>gi|296330784|ref|ZP_06873260.1| sensory histidine kinase DcuS [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675743|ref|YP_003867415.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152098|gb|EFG92971.1| sensory histidine kinase DcuS [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305413987|gb|ADM39106.1| two-component sensor histidine kinase (paired with YufM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 533

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 19  IIERPSIAIKELIENSLDAES----SRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           +I      I  LI N+LDA +     ++   +         +ITD G GM+ E+     +
Sbjct: 420 VIHELITIIGNLINNALDAVANMPKKQITMSMRFHNSILDIEITDTGAGMSEEDQAKVFE 479

Query: 74  RHCTSK 79
           +  ++K
Sbjct: 480 QGYSTK 485


>gi|260469832|ref|ZP_05813986.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259028403|gb|EEW29725.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 30  LIENSLDAES---SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+EN+L       + ++  +   GG     + DNG G+ +EE     QR
Sbjct: 358 LVENAL-RHCPPGTTIKLSVTRRGGHVVGSVADNGPGIPAEEREKVFQR 405


>gi|255020212|ref|ZP_05292281.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
 gi|254970354|gb|EET27847.1| DNA gyrase subunit B [Acidithiobacillus caldus ATCC 51756]
          Length = 801

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A    R+   I         + DNG G+  +
Sbjct: 42 EVVDNAIDEALAGYCDRILVTIHED--ESVSVRDNGRGIPVD 81


>gi|228476603|ref|ZP_04061285.1| sensor histidine kinase [Streptococcus salivarius SK126]
 gi|228251798|gb|EEK10863.1| sensor histidine kinase [Streptococcus salivarius SK126]
          Length = 509

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
             ++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 409 KEIQVTIKALEDEMLVQVQDNGEGISKEDIEHIFERFYRS 448


>gi|148273067|ref|YP_001222628.1| putative two-component system sensor kinase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830997|emb|CAN01942.1| putative two-component system sensor kinase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 584

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 22/99 (22%)

Query: 23  PSIAIKELIENSLDAESS------------RVETVIA--GGGKSFFQITDNGFGMTSEEI 68
               +  L++N++DA +             RVE  ++    G    ++ D+G G+     
Sbjct: 443 LVTIVGNLVDNAIDAAADPSVATARGDDRGRVELSLSRTDAGALVVEVADDGPGVDPAVR 502

Query: 69  PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG-AVSHL 106
           P  ++   T+K  D        G RG  L  +  + + L
Sbjct: 503 PRVLEFGVTTKAGDA-------GPRGVGLALVARSAARL 534


>gi|15677530|ref|NP_274686.1| DNA topoisomerase IV subunit B [Neisseria meningitidis MC58]
 gi|7226935|gb|AAF42030.1| topoisomerase IV subunit B [Neisseria meningitidis MC58]
 gi|316984829|gb|EFV63786.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76]
 gi|325140855|gb|EGC63365.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis CU385]
 gi|325199724|gb|ADY95179.1| DNA topoisomerase IV, B subunit [Neisseria meningitidis H44/76]
          Length = 661

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+      EE    +
Sbjct: 32 DSPTHICQEVIDNASDEALGGFATAIDVQIHEDG--SLSVHDNGRGIPVGLHPEEGVSVV 89

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 90 ELVFTRLHA 98


>gi|332092308|gb|EGI97383.1| sensor protein zraS [Shigella boydii 3594-74]
          Length = 455

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           +R +  +  L  N++ A        +   ++  G      +TD+G G+ ++++      +
Sbjct: 345 DRLTQVLLNLYLNAIQAIVQHG--VISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPY 402

Query: 76  CTSK 79
            T+K
Sbjct: 403 FTTK 406


>gi|330970282|gb|EGH70348.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 355

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA----ESSR----VETVIAGGGKSFFQIT 57
           L   + +++   +++         L+ N +DA    ++ +    V   +  GG   F ++
Sbjct: 236 LPPLLADRVQIQQVLLN-------LMLNGVDAMKKLKADQAQLEVRVGLQDGGYIGFAVS 288

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+  E I        T+K
Sbjct: 289 DNGIGVLPENIHQLFDAFYTTK 310


>gi|326800647|ref|YP_004318466.1| heat shock protein Hsp90 [Sphingobacterium sp. 21]
 gi|326551411|gb|ADZ79796.1| Heat shock protein Hsp90 [Sphingobacterium sp. 21]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 18/61 (29%)

Query: 27 IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          ++EL+ N++DA                   + +E            I+D G GMT+EE+ 
Sbjct: 30 LRELVSNAVDATQKLKRLASLGQYAGEVGDTTIEISFDE-TAKTITISDKGIGMTAEEVK 88

Query: 70 M 70
           
Sbjct: 89 K 89


>gi|320172734|gb|EFW47968.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Shigella dysenteriae CDC 74-1112]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           +R +  +  L  N++ A        +   ++  G      +TD+G G+ ++++      +
Sbjct: 348 DRLTQVLLNLYLNAIQAIVQHG--VISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPY 405

Query: 76  CTSK 79
            T+K
Sbjct: 406 FTTK 409


>gi|297798276|ref|XP_002867022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312858|gb|EFH43281.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ V+      +     +     DNG GM    I   +    +S
Sbjct: 102 AIAELLDNAVDEVQNGATFVKIDKINIVKDNTPALVF-QDNGGGMDPNGIRKCMSLGYSS 160

Query: 79  K 79
           K
Sbjct: 161 K 161


>gi|257785146|ref|YP_003180363.1| histidine kinase [Atopobium parvulum DSM 20469]
 gi|257473653|gb|ACV51772.1| histidine kinase [Atopobium parvulum DSM 20469]
          Length = 501

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+ N++    D     +   I     +   +TD+G G+  E+IP    R 
Sbjct: 390 LLSNAIRYTDDGGHVVITVSIDN-TDAVISVTDDGMGIAPEDIPQTFSRF 438


>gi|209547342|ref|YP_002279260.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538586|gb|ACI58520.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 465

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 27  IKELIENSLDAES-------SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++E++ N +D  +        RV   +    G +   + DNG G+  EE     +R  
Sbjct: 362 LREMLVNLID-NAIRYVSPNGRVTVAVWQAAGHAVVTVEDNGPGIPEEEREQVFERFY 418


>gi|91780770|ref|YP_555977.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           xenovorans LB400]
 gi|91693430|gb|ABE36627.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           xenovorans LB400]
          Length = 384

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 37  AESSRVETVIAGGGKSFF-QITDNGFGMTSEEIP 69
           A +  V   +A GG++   ++ DNG GM S  +P
Sbjct: 290 AHADEVTVELARGGRTCVLRVEDNGQGMASATLP 323


>gi|82546345|ref|YP_410292.1| sensor protein ZraS [Shigella boydii Sb227]
 gi|81247756|gb|ABB68464.1| sensor kinase for HydG [Shigella boydii Sb227]
 gi|320185956|gb|EFW60704.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Shigella flexneri CDC 796-83]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           +R +  +  L  N++ A        +   ++  G      +TD+G G+ ++++      +
Sbjct: 348 DRLTQVLLNLYLNAIQAIVQHG--VISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPY 405

Query: 76  CTSK 79
            T+K
Sbjct: 406 FTTK 409


>gi|187732012|ref|YP_001882689.1| sensor protein ZraS [Shigella boydii CDC 3083-94]
 gi|187429004|gb|ACD08278.1| sensor histidine kinase ZraS [Shigella boydii CDC 3083-94]
          Length = 458

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 21  ERPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           +R +  +  L  N++ A        +   ++  G      +TD+G G+ ++++      +
Sbjct: 348 DRLTQVLLNLYLNAIQAIVQHG--VISVTVSESGAGVKISVTDSGKGIAADQLEAIFTPY 405

Query: 76  CTSK 79
            T+K
Sbjct: 406 FTTK 409


>gi|328676348|gb|AEB27218.1| Chaperone protein HtpG [Francisella cf. novicida Fx1]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|325281459|ref|YP_004254001.1| integral membrane sensor signal transduction histidine kinase
           [Odoribacter splanchnicus DSM 20712]
 gi|324313268|gb|ADY33821.1| integral membrane sensor signal transduction histidine kinase
           [Odoribacter splanchnicus DSM 20712]
          Length = 516

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 25  IAIKELIENSLDAESSR---VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
             +  L++N++    ++   +       G+     + DNG G+ ++E  +  +R  
Sbjct: 400 NVVSNLLDNAI-KYCTKVPEISVYTRNKGQEIIISVIDNGIGIAAKEQKLIFERFY 454


>gi|313238122|emb|CBY13220.1| unnamed protein product [Oikopleura dioica]
          Length = 613

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 21 ER-PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ER     + E+++NS+D   A   SR++  I   G     I+DNG G+  +
Sbjct: 8  ERGLHHCVFEVLDNSIDEHLAGYCSRIKVAIHVDG--SVSISDNGRGIPVD 56


>gi|284047341|ref|YP_003397681.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
 gi|283951562|gb|ADB54306.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
          Length = 464

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 22  RPSIAIKELIENSLD-AES-SRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           R +  ++ LI+N+L  AE+ + +        G +   + D+G G+  + +    +   TS
Sbjct: 364 RVAQIMRILIDNALTHAEAGTDIVVSATRDDGFARLAVRDHGRGIERQALSQIFEPFYTS 423


>gi|262377662|ref|ZP_06070882.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145]
 gi|262307421|gb|EEY88564.1| DNA gyrase, B subunit [Acinetobacter lwoffii SH145]
          Length = 823

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNSIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|258541433|ref|YP_003186866.1| heat shock protein 90 [Acetobacter pasteurianus IFO 3283-01]
 gi|256632511|dbj|BAH98486.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635568|dbj|BAI01537.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638623|dbj|BAI04585.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641677|dbj|BAI07632.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644732|dbj|BAI10680.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647787|dbj|BAI13728.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650840|dbj|BAI16774.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653831|dbj|BAI19758.1| heat shock protein HtpG/Hsp90 [Acetobacter pasteurianus IFO
           3283-12]
          Length = 625

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 80/257 (31%), Gaps = 71/257 (27%)

Query: 19  IIERPSI----AIKELIENSLDA-----------ESS------RVETVIAGGGKSFFQIT 57
           ++          ++EL+ N+ DA            +       ++             IT
Sbjct: 28  VVHSLYSEREIFLRELVANAADATDRRRFEALTDGARALPEDAKIHINPDKD-ARLLTIT 86

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFR--GEAL--------PSI------- 100
           D+G GMT EE+           IS+    I   G R  G+ L        PS+       
Sbjct: 87  DDGSGMTKEEL-----------ISN-LGTIARSGTRAFGQQLENAKPEDRPSLIGQFGVG 134

Query: 101 --GA--VS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNP-GTIVEVRDLFFTIPAR 154
              A  V+  + ++SR   ++   +    G    ++ P   +  GT + +          
Sbjct: 135 FYAAFMVADKVDVVSRRAGSDEAWRWTSDGRGSYTLEPATRDKPGTDITL---------- 184

Query: 155 LNFLKSEQVETNLITDVIRRMAIAYPKVSF--TFSTIKSNRYKMNFQSTNGNFPERISQV 212
              +KS+  E    T +   +      +++  T             ++        I++ 
Sbjct: 185 --HIKSDAEEFLDPTRLQTIIRKWSDNIAWPVTILHDGKEETANEGKALWLKPKSEITEE 242

Query: 213 IGEDFINNAVELNEKSN 229
             E+F  +     +K  
Sbjct: 243 QLEEFYRHLTHNFDKPW 259


>gi|240138704|ref|YP_002963176.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240008673|gb|ACS39899.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 23  PSIAIKELIENSLD---AESSR---VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
            +  +  L+ N++    A + R   +   ++  G     +++D+G G+  E +       
Sbjct: 631 LAQVVTNLVANAVVHGFAGAERPGTITVRVSTPGALVRLEVSDDGGGIAPEHLGRIFDPF 690

Query: 76  CT 77
            T
Sbjct: 691 FT 692


>gi|228473791|ref|ZP_04058536.1| putative Hsp90 protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228274812|gb|EEK13635.1| putative Hsp90 protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 85/274 (31%), Gaps = 41/274 (14%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA           E+        +E  +   GK    I D G GMT EE+ 
Sbjct: 28  LRELISNATDATLKLKHLCQIGEAKVPYGNPIIEVKVDKEGKK-IHILDQGIGMTEEEVE 86

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRP-PQNNTGAQ 120
             + +   S       K  D   +    G  G    S   V+  + +++R   +     +
Sbjct: 87  KYINQIAFSGAEEFLNKYKDSAKDTGIIGHFGLGFYSAFMVADKVEILTRSYQEGAQAVR 146

Query: 121 IAISGEKISSVRPVAMN-PGTIVEVRDLFFTIP------ARLNFLKSEQVETNLITDVIR 173
               G    S+ P+     GT + +     +         R   +K  +     I   +R
Sbjct: 147 WECDGSPAYSIEPIEKEGHGTEIILHIAEDSTEFLEESKIRELLVKYNKFMPIPIKLGMR 206

Query: 174 RMAIAYP-----KVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
           + A+  P          +  + +     N        P  ++    + F +       + 
Sbjct: 207 KEALPRPENAPEDYKTEYKEVDNIIN--NPTPAWTKQPSDLTDEDYKAFYHELYPSQYED 264

Query: 229 NEITLQGYTGIPTFNRGNANQFYVFINGRTVQDK 262
              ++      P    G      +  + +  +D+
Sbjct: 265 PMFSIHLNVDYPFHLTGILYFPKLSNDMQLQKDR 298


>gi|168187411|ref|ZP_02622046.1| anti-sigma F factor [Clostridium botulinum C str. Eklund]
 gi|169294745|gb|EDS76878.1| anti-sigma F factor [Clostridium botulinum C str. Eklund]
          Length = 143

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQI 56
           I +L   +       E I     A+ E + NS+     D E   V+       +     +
Sbjct: 28  ISQLDPTM-------EEITDVKTAVSEAVTNSIIHGYGDREDRIVKIECEIFERDITIIV 80

Query: 57  TDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGF 92
            D+G G+  +++  A+    TS    D       GF
Sbjct: 81  EDDGIGI--DDVKQAMTPLYTS--RPDLER-SGMGF 111


>gi|167834927|ref|ZP_02461810.1| DNA gyrase subunit B [Burkholderia thailandensis MSMB43]
          Length = 822

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 50 EVLDNSIDEALAGYCNDIRVTIHAD--NSISVTDNGRGIPTD 89


>gi|254373718|ref|ZP_04989201.1| hypothetical protein FTDG_01501 [Francisella novicida GA99-3548]
 gi|151571439|gb|EDN37093.1| hypothetical protein FTDG_01501 [Francisella novicida GA99-3548]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|148556342|ref|YP_001263924.1| multi-sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148501532|gb|ABQ69786.1| multi-sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 708

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 21  ERPSIAIKELIENSLDAE--SSRVETVIAGGGKS-FFQITDNGFGMTSE 66
           +R   A+  L++N++DA   ++ VE  I   G     ++ D G GM++E
Sbjct: 593 DRFQQALGHLVQNAIDASDPAAPVEVAIGRRGLEAVVEVVDRGCGMSAE 641


>gi|108946648|gb|ABG23672.1| gyrase subunit B [Leptospira kirschneri]
 gi|108946652|gb|ABG23674.1| gyrase subunit B [Leptospira kirschneri]
 gi|108946654|gb|ABG23675.1| gyrase subunit B [Leptospira kirschneri]
          Length = 138

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKINILPNNI--VEVKDNGRGIPVD 69


>gi|329896230|ref|ZP_08271408.1| Two-component sensor CbrA: intrcellular carbon:nitrogen balance
           [gamma proteobacterium IMCC3088]
 gi|328921901|gb|EGG29268.1| Two-component sensor CbrA: intrcellular carbon:nitrogen balance
           [gamma proteobacterium IMCC3088]
          Length = 986

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            I   G+    + D+G G+   EI    +   T+K
Sbjct: 900 RIKKNGRVEIMVEDDGVGIPEHEIERIFEPFFTTK 934


>gi|325921439|ref|ZP_08183295.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325548081|gb|EGD19079.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 644

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 16/86 (18%)

Query: 23  PSIAIKELIENSLDA--ESSRVET-----------VIAGGGKSFFQITDNGFGMTSEEIP 69
               +  L+ N+ DA      +              +  G      + DNG G+    + 
Sbjct: 387 LENVVLNLVINARDALKGKGTIRIQSAAYTARNDPELDDGDYVAVNVIDNGSGIEPAILN 446

Query: 70  MAVQRHCTSK-ISD--DFSNIHTFGF 92
              +   T+K I +        T+GF
Sbjct: 447 QVFEPFFTTKPIGEGTGLGLSMTYGF 472


>gi|307946858|ref|ZP_07662193.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4]
 gi|307770522|gb|EFO29748.1| DNA topoisomerase IV, B subunit [Roseibium sp. TrichSKD4]
          Length = 682

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  +   G  +  I DNG G+  +
Sbjct: 79  EVIDNSMDEAVAGHATWIDVTLGADG--YLTIVDNGRGIPVD 118


>gi|255523045|ref|ZP_05390017.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255513160|gb|EET89428.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 337

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           ++   +    K    I D G G+  E++P   +R  T
Sbjct: 248 KISIYMEDTSKKVLVIEDTGAGIAEEDLPRVFERGFT 284


>gi|229917537|ref|YP_002886183.1| heat shock protein 90 [Exiguobacterium sp. AT1b]
 gi|229468966|gb|ACQ70738.1| heat shock protein Hsp90 [Exiguobacterium sp. AT1b]
          Length = 622

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 39/151 (25%)

Query: 27  IKELIENSLDA------ESSR------------VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA       +              ++  +    ++   I D G GMT EE+
Sbjct: 29  LRELISNASDAIDKMYYRALSDESIEFNKDDYFIKIELDKEART-ITIRDTGIGMTEEEL 87

Query: 69  PM----------AVQRHCTSKISDDFSNIHTF--GFRGEALPSIGAVS-HLTLMSRPPQN 115
                          +  T K+ +D S I  F  GF      S   V+  +T+ +R   +
Sbjct: 88  ETNLGIIAKSGSLAMKQAT-KMEEDHSLIGQFGVGF-----YSAFMVADRVTVRTRSIDS 141

Query: 116 NTGAQIAISGEKISSVRPVA-MNPGTIVEVR 145
             G      G    S+ P      GT + + 
Sbjct: 142 EQGYVWESEGTDGYSIEPTDKAGIGTEITLH 172


>gi|226947498|ref|YP_002802589.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841526|gb|ACO84192.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 40  SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +   I    GK    I DNG G+  E++        T K
Sbjct: 257 KTINLKIEEDTGKIIVSIEDNGIGIPREDLGRVFNAFFTGK 297


>gi|239818156|ref|YP_002947066.1| histidine kinase [Variovorax paradoxus S110]
 gi|239804733|gb|ACS21800.1| histidine kinase [Variovorax paradoxus S110]
          Length = 481

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 15/76 (19%)

Query: 15  AAGEIIERPSIAIKELIENSLDAESSR-----------VETVIAG---GGKSFFQITDNG 60
           A G +IE     +KEL+ N LD  +             +   +     G     Q+ DNG
Sbjct: 352 APGVVIEGNQTLLKELVRNLLD-NAINYTPSTAERPGVITARVLADPFGHVVLLQVEDNG 410

Query: 61  FGMTSEEIPMAVQRHC 76
            G+   +  +  +   
Sbjct: 411 PGIAESDRELVFEPFY 426


>gi|149915418|ref|ZP_01903945.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b]
 gi|149810707|gb|EDM70548.1| DNA topoisomerase IV subunit B [Roseobacter sp. AzwK-3b]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +      +   + DNG G+  +
Sbjct: 48 VAEILDNSMDEAVAGHANRIEVELHEDYALT---VRDNGRGIPID 89


>gi|160896196|ref|YP_001561778.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160361780|gb|ABX33393.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 27  IKELIENSLD---AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           +K LIEN++      ++     +   G  F  + D G G+  E++P   +R   S    D
Sbjct: 362 LKNLIENAVQHSPQGAT---VTVKACGLGF-SVLDQGRGVPPEDLPRIFERFWRSSERRD 417

Query: 84  F 84
            
Sbjct: 418 L 418


>gi|118496879|ref|YP_897929.1| heat shock protein 90 [Francisella tularensis subsp. novicida
          U112]
 gi|194324101|ref|ZP_03057875.1| Hsp90 protein, putative [Francisella tularensis subsp. novicida
          FTE]
 gi|208780327|ref|ZP_03247668.1| Hsp90 protein, putative [Francisella novicida FTG]
 gi|166223043|sp|A0Q4L0|HTPG_FRATN RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|118422785|gb|ABK89175.1| chaperone Hsp90, heat shock protein HtpG [Francisella novicida
          U112]
 gi|194321548|gb|EDX19032.1| Hsp90 protein, putative [Francisella tularensis subsp. novicida
          FTE]
 gi|208743695|gb|EDZ89998.1| Hsp90 protein, putative [Francisella novicida FTG]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|116332686|ref|YP_794213.1| DNA gyrase, B subunit [Lactobacillus brevis ATCC 367]
 gi|116098033|gb|ABJ63182.1| DNA gyrase subunit B [Lactobacillus brevis ATCC 367]
          Length = 647

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N +D   A  +  +   +     +   +TDNG G+ 
Sbjct: 51 EIVDNGIDEALAGFADEIHVTVNQD--NSITVTDNGRGIP 88


>gi|158320538|ref|YP_001513045.1| CheA signal transduction histidine kinase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140737|gb|ABW19049.1| CheA signal transduction histidine kinase [Alkaliphilus oremlandii
           OhILAs]
          Length = 692

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 30/99 (30%)

Query: 4   RKLSEKI---INQIAAGEI--IERPSIAIKE-------LIENSLDAESSRVETVIA---- 47
           R LS+ +   IN I +GE   ++R    I E       LI NS+D     +E  I     
Sbjct: 385 RDLSKDLGKDINLIMSGEETEVDR--TVIDEIGDPLIHLIRNSIDHGIESIEKRIELGKQ 442

Query: 48  -----------GGGKSFFQITDNGFGMTSEEI-PMAVQR 74
                       G     ++ D+G G+  E++   A+ R
Sbjct: 443 RTGTVKLSAYPDGNTVVIEVEDDGSGINVEKVKEKALSR 481


>gi|52424933|ref|YP_088070.1| DNA topoisomerase IV subunit B [Mannheimia succiniciproducens
          MBEL55E]
 gi|52306985|gb|AAU37485.1| GyrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 632

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  ++++E ++        ++ DNG GM  +
Sbjct: 31 RPNHLGQEVIDNSVDEALAGFANKIEVILHKD--QSLEVIDNGRGMPVD 77


>gi|46445984|ref|YP_007349.1| DNA topoisomerase IV subunit B [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399625|emb|CAF23074.1| putative DNA gyrase (topoisomerase) chain B [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 606

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 35/201 (17%)

Query: 2   KIRKLSEKIINQIAAGEIIERP----------SIAIKELIENSLD----AESSRVETVIA 47
            ++ L      ++ +G  I R            I +KE+++NS+D        ++   + 
Sbjct: 9   TVKTLDALAHIRLRSGMYIGRLGDGTNPDDGIYIMLKEVVDNSVDEFIMKHGKKIIIELD 68

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFSNIHTFGFRG------EALPSI 100
               S   + D G G+   ++   V +  T +K +DD     + G  G       AL S 
Sbjct: 69  ED-LSRVSVRDFGRGIPLGKVVECVSQINTGAKYNDDVFQ-FSVGLNGVGTKAVNALSS- 125

Query: 101 GAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKS 160
               H  + S        A  +    K           GT VE               K 
Sbjct: 126 ----HFVVKSYRDGEFVEAHFSQGLLKQEKKGKTKEENGTYVE-------FIPDPEIFKK 174

Query: 161 EQVETNLITDVIRRMAIAYPK 181
            + +   I   I   A     
Sbjct: 175 YRFQKEYILKRIWHYAYLNTG 195


>gi|186686365|ref|YP_001869561.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186468817|gb|ACC84618.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 30  LIENSLDA--ESSR-------------VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           LI N++DA  E+++             ++      G+    ++ DNG G+++ +      
Sbjct: 322 LICNAIDAIEEANKNKDIDTIYQNPGIIKIRTEAIGEHVILRVADNGPGISNADQTKIFD 381

Query: 74  RHCTSK 79
              T+K
Sbjct: 382 AFYTTK 387


>gi|312862528|ref|ZP_07722770.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus vestibularis F0396]
 gi|311101933|gb|EFQ60134.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus vestibularis F0396]
          Length = 505

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
             ++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 405 KEIQVTIKALEDEMLVQVQDNGEGISKEDIEHIFERFYRS 444


>gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 545

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 27  IKE----LIENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IKE    L+ N++    D     +E  I    G +  QI+DNG G+  E +    +R  
Sbjct: 438 IKEAMMNLLTNAIKYNRDGG--EIEFKIAKEDGFALVQISDNGIGIEEELLDRIFERFY 494


>gi|303247813|ref|ZP_07334081.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302490714|gb|EFL50615.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 479

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 30  LIENSLDAESSRVETVI----AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ NS+DA +   E  I             + D G G+  E +        T+K
Sbjct: 378 LV-NSMDAIAGEGEITITTHPENDNTVNLSVEDTGCGIPPENMDKLFNPFFTTK 430


>gi|260890603|ref|ZP_05901866.1| sensory transduction histidine kinase [Leptotrichia hofstadii
           F0254]
 gi|260859648|gb|EEX74148.1| sensory transduction histidine kinase [Leptotrichia hofstadii
           F0254]
          Length = 534

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 23  PSIAIKELIENSLDAES------SRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
              AI+ LIEN+    +      + +     I   G  +  I D G G++ E+      R
Sbjct: 381 LQQAIRALIENA----AKYSEPNTNIYIKSFIKD-GFGWISIQDEGVGISDEDAKRIFDR 435

Query: 75  HCTSKISDDFSNIHTFGFRGEALP---SIGAV--SHLTLMSR 111
                   D S     G  G  L     I  +    + + S+
Sbjct: 436 FY----RVDLSRTKATGGTGLGLAIVKRIVEIHNGRIEINSK 473


>gi|253576353|ref|ZP_04853683.1| anti-sigma F factor [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844246|gb|EES72264.1| anti-sigma F factor [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 153

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 13/80 (16%)

Query: 20  IERPSIAIKELIENSL----DAESS---RVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
           I      + E + NS+    D        +   I G   +   I D G G+  E++ +A 
Sbjct: 44  ITDLKTVVSEAVTNSIIHGYDGNPEGIVTISASIEGDTVTLI-IEDQGRGI--EDVELAK 100

Query: 73  QRHCTSKISDDFSNIHTFGF 92
           Q   TSK   +       GF
Sbjct: 101 QPLYTSK--PELER-SGMGF 117


>gi|171912617|ref|ZP_02928087.1| periplasmic sensor signal transduction histidine kinase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 409

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+ DA        +       G +    +TD G G+  E++P       T+K
Sbjct: 279 LVLNARDAMPAGG--VLRVATRQSGTALQITVTDTGCGIRKEDLPSLFTPFFTTK 331


>gi|218780773|ref|YP_002432091.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762157|gb|ACL04623.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 571

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 41  RVETVIAGGGKSFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
           ++E  I   G      +I DNG GM  E + +  +   ++K
Sbjct: 486 KIEIHINSVGDDQVAVRIEDNGCGMPPEHMKLIFEPFFSTK 526


>gi|124009092|ref|ZP_01693775.1| alkaline phosphatase synthesis sensor protein PhoR [Microscilla
           marina ATCC 23134]
 gi|123985306|gb|EAY25226.1| alkaline phosphatase synthesis sensor protein PhoR [Microscilla
           marina ATCC 23134]
          Length = 364

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSR--VETVIAGGGKSF--FQITDNGFGMTSE 66
             +I   ++I         L+EN++   S    VE   +   ++     + D+G G++ E
Sbjct: 231 AKRIR--QVIIN-------LLENAIKYGSKNGNVEVGFSNSEQNLLDIMVKDDGPGISVE 281

Query: 67  EIPMAVQRHC 76
            +    +R  
Sbjct: 282 HLDRIFERFY 291


>gi|111022020|ref|YP_704992.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
 gi|110821550|gb|ABG96834.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
          Length = 325

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 22  RPSIAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+     +R   V+      G    ++ D+G G+   E     +R  
Sbjct: 223 RLHQVVTNLVDNAFRHGPARTRVVVRARPDAGGVIIEVEDDGPGIAPGERSRVFERFT 280


>gi|326329136|ref|ZP_08195464.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953023|gb|EGD45035.1| DNA gyrase, B subunit [Nocardioidaceae bacterium Broad-1]
          Length = 687

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     ++  +   G  +  + DNG G+ ++
Sbjct: 48 EIVDNAVDEALAGYCDTIKVTLREDG--WVSVADNGRGIPTD 87


>gi|296535763|ref|ZP_06897924.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
 gi|296263831|gb|EFH10295.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
           cervicalis ATCC 49957]
          Length = 691

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 18/70 (25%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQI 56
           M I    E  ++ +AA E+I+           N++D   A  + R+E  +     ++  +
Sbjct: 72  MYIGGTDENALHHLAA-EVID-----------NAMDEAVAGHADRIEVTLEKD--NWLTV 117

Query: 57  TDNGFGMTSE 66
            DNG G+ ++
Sbjct: 118 RDNGRGIPTD 127


>gi|224826278|ref|ZP_03699380.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224601379|gb|EEG07560.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 506

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 23  PSIAIKELIENS----LDAESSRVETVIAGGGKS----FFQITDNGFGMTSEEIPMAVQR 74
               + +L+EN+      A   R    +    +        I+D+G G+  E +    + 
Sbjct: 396 LFQVVSQLLENATLHAFQAG-QRGRIRLESALRDERHVRISISDSGCGIAPENLDRVFEP 454

Query: 75  HCT 77
             T
Sbjct: 455 FFT 457


>gi|188474269|gb|ACD49734.1| DNA gyrase subunit B [Vibrio alginolyticus]
          Length = 778

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 76/264 (28%), Gaps = 31/264 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           E+++NS+D   A     +   I     +   ++D+G G+       E +  A       H
Sbjct: 26  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLH 83

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM----------SRPPQNNTGAQIAIS 124
              K  D+   + + G  G  +  + A+S  + L           +            + 
Sbjct: 84  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVG 142

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
               +  +             +  + I A+     S       I  V  R A  +    +
Sbjct: 143 DTDKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKHDHFMY 202

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                    +  +  +      E+I     E     +VE+  + N+   +      T N 
Sbjct: 203 EG---GIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFC-FTNNI 258

Query: 245 GNANQFYVFINGRTVQDKFILSTI 268
              +        R    + + S +
Sbjct: 259 PQRDGGTHLAGFRAALTRTLNSFM 282


>gi|116074377|ref|ZP_01471639.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
 gi|116069682|gb|EAU75434.1| DNA topoisomerase IV subunit B [Synechococcus sp. RS9916]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   S ++ V+A  G +   +TDNG G+ ++
Sbjct: 45 VYEVVDNSVDEALAGHCSEIQVVLAEDGSAS--VTDNGRGIPTD 86


>gi|91228345|ref|ZP_01262273.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01]
 gi|269965275|ref|ZP_06179396.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B]
 gi|91188105|gb|EAS74409.1| DNA gyrase subunit B [Vibrio alginolyticus 12G01]
 gi|269830076|gb|EEZ84304.1| DNA gyrase, subunit B [Vibrio alginolyticus 40B]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 76/264 (28%), Gaps = 31/264 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           E+++NS+D   A     +   I     +   ++D+G G+       E +  A       H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM----------SRPPQNNTGAQIAIS 124
              K  D+   + + G  G  +  + A+S  + L           +            + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVG 158

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
               +  +             +  + I A+     S       I  V  R A  +    +
Sbjct: 159 DTDKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKHDHFMY 218

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                    +  +  +      E+I     E     +VE+  + N+   +      T N 
Sbjct: 219 EG---GIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFC-FTNNI 274

Query: 245 GNANQFYVFINGRTVQDKFILSTI 268
              +        R    + + S +
Sbjct: 275 PQRDGGTHLAGFRAALTRTLNSFM 298


>gi|262392780|ref|YP_003284634.1| DNA gyrase subunit B [Vibrio sp. Ex25]
 gi|262336374|gb|ACY50169.1| DNA gyrase subunit B [Vibrio sp. Ex25]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 76/264 (28%), Gaps = 31/264 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           E+++NS+D   A     +   I     +   ++D+G G+       E +  A       H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM----------SRPPQNNTGAQIAIS 124
              K  D+   + + G  G  +  + A+S  + L           +            + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVG 158

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
               +  +             +  + I A+     S       I  V  R A  +    +
Sbjct: 159 DTDKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKHDHFMY 218

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                    +  +  +      E+I     E     +VE+  + N+   +      T N 
Sbjct: 219 EG---GIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFC-FTNNI 274

Query: 245 GNANQFYVFINGRTVQDKFILSTI 268
              +        R    + + S +
Sbjct: 275 PQRDGGTHLAGFRAALTRTLNSFM 298


>gi|152967791|ref|YP_001363575.1| histidine kinase HAMP region domain protein [Kineococcus
           radiotolerans SRS30216]
 gi|151362308|gb|ABS05311.1| histidine kinase HAMP region domain protein [Kineococcus
           radiotolerans SRS30216]
          Length = 733

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 19/84 (22%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAES-----SRVETV---IAGGGKSFFQIT 57
           L +  ++  AA ++    +    EL+EN   A +     +RV         GG +   +T
Sbjct: 394 LDDATLHGSAAADVTHLLA----ELLEN---ATAFSPSTTRVVVSGTPTVDGGYAL-SVT 445

Query: 58  DNGFGMTSEEIPMAVQR---HCTS 78
           D+G GM+  ++ +A +R     TS
Sbjct: 446 DSGVGMSPADVALANERIANAATS 469


>gi|311032628|ref|ZP_07710718.1| sensor histidine kinase [Bacillus sp. m3-13]
          Length = 462

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 17  GEIIE----RPSIAIKELIENSL--DAESSRVET---VIAGGGKSFFQITDNGFGMTSEE 67
           G ++     R    I  L+ N++   A +  +      +   G    +I D G G+  E+
Sbjct: 343 GVVVNGDYGRLDQVIDNLLSNAIKFSANNRTIRISVVEVKTMGI--LKIEDEGVGIPEED 400

Query: 68  IPMAVQRHC 76
           +P   +R  
Sbjct: 401 VPYIFERFY 409


>gi|281355428|ref|ZP_06241922.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318308|gb|EFB02328.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
          Length = 596

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 30  LIENSLD-AESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++  +     E  I      G++  ++ D+G G+ +E +P   +R  
Sbjct: 493 LIDNAIKHSGEKS-EVRITAREESGEAVIEVADHGCGIPAEHLPRVFERFY 542


>gi|239625190|ref|ZP_04668221.1| signal transduction histidine kinase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519420|gb|EEQ59286.1| signal transduction histidine kinase [Clostridiales bacterium
           1_7_47FAA]
          Length = 503

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 23  PSIAIKELIENSLDAESSRVE----TVI---AGGGKSFFQITDNGFGMTSEEI 68
           PS+ ++ L+EN+++     +E      +     GG+   ++ DNG GMT E++
Sbjct: 383 PSMILQPLVENAVNHGIRGIEWPGEIRLRVQDKGGQIEIRVEDNGKGMTREQV 435


>gi|228948417|ref|ZP_04110700.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811404|gb|EEM57742.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   +     K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|126436927|ref|YP_001072618.1| GAF sensor signal transduction histidine kinase [Mycobacterium sp.
           JLS]
 gi|126236727|gb|ABO00128.1| GAF sensor signal transduction histidine kinase [Mycobacterium sp.
           JLS]
          Length = 568

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMT 64
             ++E + N++  A ++ +   +        ++ DNG G+ 
Sbjct: 487 AVVREAVSNAVRHARATELTVRVTVADDLCIEVADNGCGID 527


>gi|108801089|ref|YP_641286.1| putative signal transduction histidine kinase [Mycobacterium sp.
           MCS]
 gi|119870230|ref|YP_940182.1| GAF sensor signal transduction histidine kinase [Mycobacterium sp.
           KMS]
 gi|108771508|gb|ABG10230.1| putative signal transduction histidine kinase [Mycobacterium sp.
           MCS]
 gi|119696319|gb|ABL93392.1| GAF sensor signal transduction histidine kinase [Mycobacterium sp.
           KMS]
          Length = 568

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 25  IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMT 64
             ++E + N++  A ++ +   +        ++ DNG G+ 
Sbjct: 487 AVVREAVSNAVRHARATELTVRVTVADDLCIEVADNGCGID 527


>gi|86738960|ref|YP_479360.1| heat shock protein 90 [Frankia sp. CcI3]
 gi|108935928|sp|Q2JGG1|HTPG_FRASC RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
           protein htpG; AltName: Full=High temperature protein G
 gi|86565822|gb|ABD09631.1| heat shock protein Hsp90 [Frankia sp. CcI3]
          Length = 650

 Score = 41.6 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 45/185 (24%)

Query: 27  IKELIENSLDA-----------------ESS-RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                  +  R+E       ++   + DNG GM+ +E+
Sbjct: 33  LRELISNASDALDKLRIASLVKDGPRVDSADLRIEIEADVNARTL-TVRDNGIGMSRDEV 91

Query: 69  PMAVQRHCTS-------KISD--------DFSNIHTFGFRGEALPSIGAVS-HLTLMSRP 112
              +     S       K+ +        D       GF      S   V+  +TL++  
Sbjct: 92  VGLIGTIAKSGTAELLRKLRESEDGAASSDLIGQFGVGF-----YSTFMVADKVTLLTGK 146

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDV 171
              + G +    G     +  V     GT V V       P        +  + N I ++
Sbjct: 147 AGESGGTRWESDGAGTYVIETVDDAPRGTAVTVHLK----PEDSEDRLYDYTDENKIREI 202

Query: 172 IRRMA 176
           ++R +
Sbjct: 203 VKRYS 207


>gi|316962652|gb|EFV48717.1| heat shock protein HtpG [Trichinella spiralis]
          Length = 368

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 24/84 (28%)

Query: 4   RKLSEKIINQIAAG-EIIERPSIAIKELIENSLDA----------ESSRVE------TVI 46
           R L + + N + +  E+       ++ELI N+ DA           ++ ++        I
Sbjct: 187 RMLLDVVANSLYSHKEVF------VRELISNASDALEKLRALQATNATDIQTVDELKIEI 240

Query: 47  AGGGKSF-FQITDNGFGMTSEEIP 69
                   F I DNG GMT EE+ 
Sbjct: 241 FTNKLEKTFTIRDNGIGMTKEELK 264


>gi|302524596|ref|ZP_07276938.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
 gi|302433491|gb|EFL05307.1| DNA gyrase, B subunit [Streptomyces sp. AA4]
          Length = 697

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS D   A  ++R+   +   G    Q+ D+G G+ 
Sbjct: 57 EVVDNSTDEGVAGHATRIVVTLHADG--SVQVDDDGRGIP 94


>gi|217076995|ref|YP_002334711.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
 gi|217036848|gb|ACJ75370.1| DNA gyrase, B subunit [Thermosipho africanus TCF52B]
          Length = 627

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D         ++  I   G    ++ DNG G+  +
Sbjct: 37 VYEIVDNSIDESLQGYCDTIKVTIFKDG--SVEVEDNGRGIPVD 78


>gi|170744193|ref|YP_001772848.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168198467|gb|ACA20414.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 479

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 20/91 (21%)

Query: 5   KLSEKIINQIAAGEIIE--RP---------SIAIKELIENSLD-------AESSRVETVI 46
            L++++   +AAG  IE  RP         +  + E++ N +D       A + RV   +
Sbjct: 326 VLADQVPRALAAGVEIEYERPSEAVMVPGHATLVGEILANIVDNAIRYAGAGA-RVVVRV 384

Query: 47  AG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A   G +  ++ D+G G+  +       R  
Sbjct: 385 ANEPGGAIAEVEDDGPGIAPQHREKVFSRFY 415


>gi|88603104|ref|YP_503282.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88188566|gb|ABD41563.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 737

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 30  LIENSL-DAES-SRVETVIAGGGKSFFQI-TDNGFGMTSEEIPMAVQRHC 76
           L++NSL    + SR+        +    +  D+G G+  +E  +  +R  
Sbjct: 633 LVDNSLRHGGAVSRISIAAEEQEEGLLVVFEDDGVGIAPDEKELIFERGY 682


>gi|27544674|dbj|BAC55032.1| DNA gyrase B subunit [Legionella waltersii]
          Length = 293

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 14 EVVDNSIDEALAGHCKEIFVTIHAD--ESITVKDDGRGIPVD 53


>gi|148262089|ref|YP_001228795.1| DNA gyrase, B subunit [Geobacter uraniireducens Rf4]
 gi|146395589|gb|ABQ24222.1| DNA gyrase subunit B [Geobacter uraniireducens Rf4]
          Length = 794

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
             ++     + E+++NS+D   A     +   I   G     + DNG G+ ++
Sbjct: 34 STSVQGLHHLVYEIVDNSIDEALAGHCDDILVTINVDG--SVTVVDNGRGIPTD 85


>gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 597

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 26  AIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            ++ L++N++   D  + R+        G    ++ DNG G+  +++    +R  
Sbjct: 484 VVRNLLDNAVKYVDEHNGRIRLSAAKRDGFVTLEVEDNGIGIAQKDLDRIFERFY 538


>gi|323139198|ref|ZP_08074254.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
 gi|322395581|gb|EFX98126.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
          Length = 462

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRH 75
           L+EN+    +SR+E  I+          + DNG GM  E+   A +  
Sbjct: 354 LVENAT-HHASRIEIAISEATPKNLHVDVIDNGPGMPPEQKAAAFEPF 400


>gi|315022878|gb|EFT35902.1| DNA topoisomerase IV subunit B [Riemerella anatipestifer RA-YM]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 9/43 (20%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+++NS+D     A   R+E  +        QI D G G+ 
Sbjct: 49 LKEILDNSIDEFRMKAG-KRIEIKLDD---RKVQIRDYGRGIP 87


>gi|297583439|ref|YP_003699219.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141896|gb|ADH98653.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 41  RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +    I   G +   + DNG G+  E+IP   +R 
Sbjct: 378 HITVSAIEKIGMASITVEDNGQGIPKEQIPFLTERF 413


>gi|238023232|ref|ZP_04603658.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC
          51147]
 gi|237865615|gb|EEP66755.1| hypothetical protein GCWU000324_03159 [Kingella oralis ATCC
          51147]
          Length = 801

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A    R+   I         I DNG G+ 
Sbjct: 46 EVLDNAIDEALAGYCDRITVAINAD--ESITIEDNGRGIP 83


>gi|229826751|ref|ZP_04452820.1| hypothetical protein GCWU000182_02127 [Abiotrophia defectiva ATCC
           49176]
 gi|229789621|gb|EEP25735.1| hypothetical protein GCWU000182_02127 [Abiotrophia defectiva ATCC
           49176]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           S ++      G     +++DNG G+  E++P   +R  
Sbjct: 386 SEIKLSCEISGNDVIIKVSDNGSGIAKEDLPHIFERFY 423


>gi|261344789|ref|ZP_05972433.1| hypothetical protein PROVRUST_06054 [Providencia rustigianii DSM
           4541]
 gi|282567234|gb|EFB72769.1| DNA topoisomerase IV, B subunit [Providencia rustigianii DSM 4541]
          Length = 631

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 21/193 (10%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---EIP----- 69
           RP+   +E+I+NS+D   A  +  +E ++        ++ DNG GM  +   E+      
Sbjct: 32  RPNHLAQEVIDNSVDEALAGHAGHIEVILYPD--QSLEVIDNGRGMPVDIHPEMKVSAVE 89

Query: 70  -MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEK 127
            +  Q H   K S+      + G  G  +  + A+S  + +  R              + 
Sbjct: 90  LILGQLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRIEVTVRRDGQVYQIAFENGDKV 148

Query: 128 ISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS 187
                               +      +++  S +   + +T  ++  A+  P V  TF 
Sbjct: 149 EDLHVIGTCGKRNTGTSVHFW----PDVSYFDSPRFSVSRLTHNLKAKAVLCPGVQITFK 204

Query: 188 TIKSNRYKMNFQS 200
            + +   +    S
Sbjct: 205 DLLNETEQSWCYS 217


>gi|197302273|ref|ZP_03167332.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC
          29176]
 gi|197298704|gb|EDY33245.1| hypothetical protein RUMLAC_01000 [Ruminococcus lactaris ATCC
          29176]
          Length = 644

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A    ++   I     +   +TDNG G+ 
Sbjct: 46 VYEIVDNAVDEALAGYCDKIVVDINKD--NSITVTDNGRGIP 85


>gi|187931151|ref|YP_001891135.1| heat shock protein 90 [Francisella tularensis subsp. mediasiatica
          FSC147]
 gi|187712060|gb|ACD30357.1| chaperone Hsp90, heat shock protein HtpG [Francisella tularensis
          subsp. mediasiatica FSC147]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|209886204|ref|YP_002290062.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
 gi|209874400|gb|ACI94196.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
          Length = 540

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 15  AAGEIIERPSIA-IKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           AAG I+   +   ++E         S R+   +  G      +TDNG GMT+E    A+Q
Sbjct: 291 AAGRIVLDVACVDLRE--------GSPRLLPDMKPGSYVRISVTDNGCGMTAEIREKALQ 342

Query: 74  RHCTSKISD 82
              T+K ++
Sbjct: 343 PFFTTKAAE 351


>gi|196033201|ref|ZP_03100614.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994630|gb|EDX58585.1| sensor histidine kinase [Bacillus cereus W]
          Length = 484

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   +     K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|163256334|dbj|BAF95677.1| DNA gyrase subunit B [Bradyrhizobium sp. MAFF 210181]
          Length = 269

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++N++D   A  ++RVE ++     +   + D+G G+  +
Sbjct: 1  VDNAIDEALAGHATRVEVILNSD--NSVTVRDDGRGIPVD 38


>gi|160935172|ref|ZP_02082555.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441903|gb|EDP19600.1| hypothetical protein CLOBOL_00067 [Clostridium bolteae ATCC
          BAA-613]
          Length = 657

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTS 65
          + E+++N++D   A   + ++  +   G     + DNG G+ +
Sbjct: 48 VYEIVDNAVDEALAGHCTLIQVYLNKDG--SVTVRDNGRGIPA 88


>gi|134302558|ref|YP_001122528.1| heat shock protein 90 [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|166223044|sp|A4IZQ6|HTPG_FRATW RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|134050335|gb|ABO47406.1| chaperone Hsp90/heat shock protein HtpG [Francisella tularensis
          subsp. tularensis WY96-3418]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 595

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N++    D    R+E  +           ++D G G++ +++P   +R
Sbjct: 480 DRLRQILLNLVTNAIAYTPDKG--RIEISLIERENELDLI-VSDTGIGISEKDLPRIFER 536

Query: 75  HC 76
             
Sbjct: 537 FY 538


>gi|4512392|dbj|BAA75355.1| similar to B.subtilis ytsB gene(64%-identity) [Bacillus halodurans]
          Length = 261

 Score = 41.6 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            S  +++L+ N++  +E+S +        GK+  ++TD G G+  +++P   ++  TS
Sbjct: 148 LSFILRQLLSNAVKYSEASDIIIKSDVVSGKTVVEVTDFGRGIEPKDLPRIFEKGFTS 205


>gi|325336833|gb|ADZ13107.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
           subunit [Riemerella anatipestifer RA-GD]
          Length = 633

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 9/43 (20%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
           +KE+++NS+D     A   R+E  +        QI D G G+ 
Sbjct: 63  LKEILDNSIDEFRMKAG-KRIEIKLDD---RKVQIRDYGRGIP 101


>gi|322804539|emb|CBZ02090.1| two-component sensor kinase YvcQ [Clostridium botulinum H04402 065]
          Length = 352

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 40  SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +   I    GK    I DNG G+  E++        T K
Sbjct: 260 KTINLKIEEDTGKIIVSIEDNGIGIPREDLGRVFNAFFTGK 300


>gi|261407192|ref|YP_003243433.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261283655|gb|ACX65626.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 333

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 38  ESSRVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            +  +    +     +   I DNG G+  E++P   +R  
Sbjct: 247 GA--IAISFSENALYTEIVIADNGKGIPKEDLPYIFKRFY 284


>gi|240139126|ref|YP_002963601.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
          extorquens AM1]
 gi|254561720|ref|YP_003068815.1| DNA gyrase subunit B [Methylobacterium extorquens DM4]
 gi|240009098|gb|ACS40324.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
          extorquens AM1]
 gi|254268998|emb|CAX24959.1| DNA gyrase, subunit B (type II topoisomerase) [Methylobacterium
          extorquens DM4]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 50 EVVDNAIDEALAGHADLVTVTLNADG--SVTVSDNGRGIPTD 89


>gi|254526641|ref|ZP_05138693.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221538065|gb|EEE40518.1| DNA gyrase, B subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 655

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +E ++   G +    +DNG G+ ++
Sbjct: 48 VYEVVDNSVDEALAGHCDHIEIILRADGSALI--SDNGRGIPTD 89


>gi|229816048|ref|ZP_04446369.1| hypothetical protein COLINT_03102 [Collinsella intestinalis DSM
           13280]
 gi|229808362|gb|EEP44143.1| hypothetical protein COLINT_03102 [Collinsella intestinalis DSM
           13280]
          Length = 459

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 23  PSIAIKELIENSL-----DAESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRH 75
           P+  I+ L+EN++     D     +   +A  G      ++ D+G GM  +       + 
Sbjct: 339 PAFVIQPLVENAVRHAMPDEGPLGISITVAMAGNRAVSIEVADDGVGMDEQTAMRLFDQS 398

Query: 76  CT 77
            T
Sbjct: 399 VT 400


>gi|184154481|ref|YP_001842821.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956]
 gi|227514123|ref|ZP_03944172.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
          14931]
 gi|260662542|ref|ZP_05863437.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|183225825|dbj|BAG26341.1| DNA gyrase subunit B [Lactobacillus fermentum IFO 3956]
 gi|227087494|gb|EEI22806.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
          14931]
 gi|260553233|gb|EEX26176.1| DNA gyrase, B subunit [Lactobacillus fermentum 28-3-CHN]
 gi|299782689|gb|ADJ40687.1| DNA gyrase subunit B [Lactobacillus fermentum CECT 5716]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 17 GEIIERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
             ++     + E+++N +D   A     +  ++     +   +TDNG G+  +
Sbjct: 41 STTVQGLHHLVWEIVDNGIDEALAGFCDEINVIVEPD--NSIIVTDNGRGIPVD 92


>gi|218530751|ref|YP_002421567.1| DNA gyrase subunit beta [Methylobacterium chloromethanicum CM4]
 gi|218523054|gb|ACK83639.1| DNA gyrase, B subunit [Methylobacterium chloromethanicum CM4]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 50 EVVDNAIDEALAGHADLVTVTLNADG--SVTVSDNGRGIPTD 89


>gi|163851998|ref|YP_001640041.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1]
 gi|163663603|gb|ABY30970.1| DNA gyrase, B subunit [Methylobacterium extorquens PA1]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 50 EVVDNAIDEALAGHADLVTVTLNADG--SVTVSDNGRGIPTD 89


>gi|106734145|gb|ABF82549.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  I  G  +   + D G G+  +
Sbjct: 5  EIVDNSIDEALAGYCDTIKVTIEPG--NSILVEDYGRGIPVD 44


>gi|89093433|ref|ZP_01166382.1| hypothetical protein MED92_13311 [Oceanospirillum sp. MED92]
 gi|89082412|gb|EAR61635.1| hypothetical protein MED92_13311 [Oceanospirillum sp. MED92]
          Length = 646

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 18  EIIERPSI---AIKELIENSLDA----ESSRVETVIAG--GGKSFFQITDNGFGMTSEEI 68
           E++  P      +  L+ N+LDA    E  +V         G    +++DNG G+T E  
Sbjct: 530 EVLADPVQLEQVVLNLLTNALDAIHSQEEKKVTIRCKKISSGFE-IKVSDNGPGITPELQ 588

Query: 69  PMAVQRHCTSK 79
                   T+K
Sbjct: 589 EQIFDPFFTTK 599


>gi|308188703|ref|YP_003932834.1| two-component system sensor histidine kinase [Pantoea vagans C9-1]
 gi|308059213|gb|ADO11385.1| probable two-component system sensor histidine kinase [Pantoea
           vagans C9-1]
          Length = 451

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 27  IKELIENSL---DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           ++ L++N++    A S  V+  +     S   + DNG G+++ ++    +R 
Sbjct: 354 VRNLLDNAIRYTPAGS-EVDVRLQANSLS---VEDNGEGLSAADLQRLGERF 401


>gi|262199976|ref|YP_003271185.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262083323|gb|ACY19292.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 465

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 32  ENSLDA------ESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHCTSK 79
           +N++D+      +S +V   +    K    I   DNG G+         + + TSK
Sbjct: 366 KNAVDSMLKSRTKSPKVTIGVLRPSKDSISIYFDDNGEGIEEAIAEKVFEPYFTSK 421


>gi|218529471|ref|YP_002420287.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|254560394|ref|YP_003067489.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
 gi|218521774|gb|ACK82359.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|254267672|emb|CAX23518.1| putative integral membrane sensor signal transduction histidine
           kinase precursor [Methylobacterium extorquens DM4]
          Length = 473

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 20/103 (19%)

Query: 17  GEIIER----PSIAIKELIENSL-----DAESSRVETVIAGGGKSF--FQITDNGFGMTS 65
           G +++      +  I  L  N++     D  S  +E   +  G+      + D+G G+  
Sbjct: 352 GIVLDSHPGALAQVISNLALNAIVHGYPDGRSGVLEVSASCSGEGRLHIIVADDGVGIPP 411

Query: 66  EEIPMAVQRHCTS---KISDDF-----SNIHTFGFRGE-ALPS 99
           E +        T+   K S         N+ T   RG+ AL S
Sbjct: 412 ENLRKVFDPFFTTRRGKGSTGLGLHIVFNLVTSTLRGQIALSS 454


>gi|182414221|ref|YP_001819287.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177841435|gb|ACB75687.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 383

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 33  NSLDAESSRVETVIAGGGKSFFQIT--DNGFGMTSE 66
           N+L+A + ++   +   G    +++  DNG GM  E
Sbjct: 294 NALEAGAKQLVVGLNRAG-DRIEVSISDNGEGMAPE 328


>gi|170746766|ref|YP_001753026.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170653288|gb|ACB22343.1| DNA gyrase, B subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 814

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     ++DNG G+  +
Sbjct: 47 VYEVVDNAIDEALAGHADLVTVTLNADG--SCTVSDNGRGIPVD 88


>gi|153835670|ref|ZP_01988337.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01]
 gi|148867704|gb|EDL66971.1| DNA topoisomerase IV, B subunit [Vibrio harveyi HY01]
          Length = 626

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 76/203 (37%), Gaps = 30/203 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFS-TIKSNRYKMNFQSTNGNF 205
            TF+  + +  YK +++    ++
Sbjct: 200 ITFTDKVNNKDYKWHYEDGLKDY 222


>gi|159900889|ref|YP_001547136.1| HSP90 family molecular chaperone-like protein [Herpetosiphon
          aurantiacus ATCC 23779]
 gi|159893928|gb|ABX07008.1| Molecular chaperone HSP90 family-like [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 838

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 17/81 (20%)

Query: 1  MKIRKLSEKIINQIAAGEII-ERPSIAIKELIENSLD----AESS-------RVETVIAG 48
          M I      +I  +  GE +   P +AI+EL++N+ D     ++         +      
Sbjct: 12 MTINV--PGVIRTL--GESLYADPHVAIRELLQNAHDTCLVRQADDPNAPLPEIHVRYDP 67

Query: 49 GGKSFFQITDNGFGMTSEEIP 69
           G+S   I DNG GMT  E+ 
Sbjct: 68 FGRSL-TIEDNGAGMTEAEVE 87


>gi|27530060|dbj|BAC53885.1| DNA gyrase B subunit [Legionella rubrilucens]
          Length = 282

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 10 EVVDNSIDEALAGHCKEIFVTIHAD--ESITVKDDGRGIPVD 49


>gi|326430063|gb|EGD75633.1| hypothetical protein PTSG_06697 [Salpingoeca sp. ATCC 50818]
          Length = 5949

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 25 IAIKELIENSLDAESSRVETVIA--GGGKSFFQITDNG 60
            IKELI+N+ DAE++ V   +     G    +  D G
Sbjct: 35 SVIKELIQNADDAEATCVRIALDKRQFGTEKLRFPDTG 72


>gi|295979441|dbj|BAJ07393.1| DNA gyrase subunit B [Rhodoplanes elegans]
          Length = 306

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A  +  V   +   G     + D+G G+ 
Sbjct: 12 VYEVVDNAIDEALAGYAREVSVTLNPDG--SVTVRDDGRGIP 51


>gi|288800666|ref|ZP_06406123.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332127|gb|EFC70608.1| DNA gyrase subunit B (Topoisomerase II subunit B) [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 25/241 (10%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A   R+E  I     +   + D G G+   ++  AV    T  K 
Sbjct: 46  LKEVVDNSIDEFKMNAG-RRIEIDITEN--ASVSVRDYGRGIPQGKLIEAVSVLNTGGKY 102

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPG 139
                   + G  G  + ++ A+S    + S        A       +           G
Sbjct: 103 DSKAFK-KSVGLNGVGIKAVNALSKRFEVRSYRDGKVRTAIFERGILQSDKTTKTTDENG 161

Query: 140 TIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF----TFSTIKSNRYK 195
           T +                 + +   ++I  ++R        ++          ++    
Sbjct: 162 TFIFFE-------PDNQLFLNYRFHDDIIETMLRNYTYLNTGLAIMYNGRRIMSRNGLAD 214

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           +   +   +    I  +IGED        N+   E                      F  
Sbjct: 215 LLTDTMTTDGLYPIIHIIGEDIEIAFTHTNQYGEEYHS---FVNGQHTTQGGTHQTAFKE 271

Query: 256 G 256
            
Sbjct: 272 H 272


>gi|229829522|ref|ZP_04455591.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles
          DSM 14600]
 gi|229791953|gb|EEP28067.1| hypothetical protein GCWU000342_01614 [Shuttleworthia satelles
          DSM 14600]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   I  G  +   + D+G G+ 
Sbjct: 44 VYEIVDNSVDEALAGYCHHIRVTINRG--NSVTVVDDGRGIP 83


>gi|228937813|ref|ZP_04100443.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228970694|ref|ZP_04131336.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977271|ref|ZP_04137667.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228782410|gb|EEM30592.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228788996|gb|EEM36933.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821848|gb|EEM67846.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326938294|gb|AEA14190.1| sensory histidine kinase DcuS [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 534

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 19  IIERPSIAIKELIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           II      +  LI+N+L+A       +VE  I  G      + D G G+  +EI     +
Sbjct: 423 IIHELITIVGNLIDNALEAVTNCEQKQVEVKIQQGDILTITVQDTGKGIQEKEIEELFTK 482

Query: 75  HCTSK 79
             ++K
Sbjct: 483 GYSTK 487


>gi|219847340|ref|YP_002461773.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541599|gb|ACL23337.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 449

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 14  IAAGEIIERPSIAIKELIENSL---DAESSRVETV--IAGGGKSFFQITDNGFGMTSEEI 68
           IA GE   R +  ++ L+ N+L    A   ++         G     + D G G+   +I
Sbjct: 337 IADGE---RIAQVVRNLLSNALRYTPAG-GQIMVTSTAHEQGV-LVSVIDTGSGIEPTDI 391

Query: 69  PMAVQRHCTS 78
           P   +R   S
Sbjct: 392 PHIFERFYRS 401


>gi|188996530|ref|YP_001930781.1| integral membrane sensor signal transduction histidine kinase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931597|gb|ACD66227.1| integral membrane sensor signal transduction histidine kinase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 520

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 18/75 (24%)

Query: 23  PSIAIKE---------LIENSLDA-ESSRVE---TVI-----AGGGKSFFQITDNGFGMT 64
           PS  + E         L+ NS+DA +   ++     I         K    + DNG G+ 
Sbjct: 400 PSSMVDENLFKQVIVNLVLNSIDAIKEKNIQDGYIKISTYYNKDKNKIQIIVEDNGIGIK 459

Query: 65  SEEIPMAVQRHCTSK 79
            E      +   T+K
Sbjct: 460 QEHKDKIFKPFFTTK 474


>gi|163791511|ref|ZP_02185917.1| sensor histidine kinase ResE [Carnobacterium sp. AT7]
 gi|159873234|gb|EDP67332.1| sensor histidine kinase ResE [Carnobacterium sp. AT7]
          Length = 598

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC 76
             ++ DNG G++ E++P    R  
Sbjct: 521 LIEVIDNGTGISEEDVPYVFDRFY 544


>gi|156071392|dbj|BAF75803.1| DNA gyrase subunit B [Bradyrhizobium betae]
          Length = 278

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++N++D   A  ++RV+ ++     +   + D+G G+  +
Sbjct: 1  VDNAIDEALAGHATRVDVILNAD--NSVTVRDDGRGIPVD 38


>gi|254230346|ref|ZP_04923732.1| DNA gyrase, B subunit [Vibrio sp. Ex25]
 gi|151937138|gb|EDN56010.1| DNA gyrase, B subunit [Vibrio sp. Ex25]
          Length = 563

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 76/264 (28%), Gaps = 31/264 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----SEEIPMA----VQRH 75
           E+++NS+D   A     +   I     +   ++D+G G+       E +  A       H
Sbjct: 42  EVVDNSIDEALAGHCKDIVVTIHED--NSVSVSDDGRGIPTEIHSEENVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLM----------SRPPQNNTGAQIAIS 124
              K  D+   + + G  G  +  + A+S  + L           +            + 
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELTIHRGGHIHTQTYRHGEPQAPLAVVG 158

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
               +  +             +  + I A+     S       I  V  R A  +    +
Sbjct: 159 DTDKTGTQIRFWPSAETFSNTEFHYDILAKRLRELSFLNSGVSIKLVDEREADKHDHFMY 218

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
                    +  +  +      E+I     E     +VE+  + N+   +      T N 
Sbjct: 219 EG---GIQAFVDHLNTNKTPIIEKIFHFNSEREDGISVEVAMQWNDGFQENIFC-FTNNI 274

Query: 245 GNANQFYVFINGRTVQDKFILSTI 268
              +        R    + + S +
Sbjct: 275 PQRDGGTHLAGFRAALTRTLNSFM 298


>gi|58736985|dbj|BAD89401.1| PMS1 nirs variant 4 [Homo sapiens]
          Length = 555

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 26/228 (11%)

Query: 228 SNEITLQGYTGIPTF-----NRGNANQFYVFINGRTVQDKFILSTIRTAYAETI---PLG 279
            N+I L G+           +     + ++FIN R V  K IL  IR  Y          
Sbjct: 16  HNKIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTR 75

Query: 280 RYPVVVLLLEIDPRQVDVNVHPAKSYIRFRNPTIIRNFIIQSIQKAI-----------NK 328
            YPV  L +++    VDVN+ P KS +  +N   +   +   +               NK
Sbjct: 76  LYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGPLPSTNSYENNK 135

Query: 329 KGISTSSVLSKKMISS---FHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSD 385
             +S + ++  K   +   F++  +   +     TS+   Q  +   E+  +T+D L   
Sbjct: 136 TDVSAADIVLSKTAETDVLFNKVESSGKNYSNVDTSVIPFQNDMHNDESGKNTDDCLNHQ 195

Query: 386 ----DPTYSEDNDPVEESEATHYQLGIACAQIHQNYIISQTTDGLVIV 429
               D  Y   +  +   +          +  + ++  SQT       
Sbjct: 196 ISIGDFGYGHCSSEISNIDKNTKNAFQDISMSNVSWENSQTEYSKTCF 243


>gi|27381017|ref|NP_772546.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27354183|dbj|BAC51171.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 676

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 45  VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  G  +   ITD+G GMT + I  A +   T+K
Sbjct: 454 EVESGSYALISITDDGEGMTPDVIERAFEPFFTTK 488


>gi|89070388|ref|ZP_01157695.1| Na+/solute symporter [Oceanicola granulosus HTCC2516]
 gi|89044035|gb|EAR50210.1| Na+/solute symporter [Oceanicola granulosus HTCC2516]
          Length = 893

 Score = 41.6 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           R+E  +  GG++     DNG G+  E+  +  ++   S+++D
Sbjct: 806 RIEV-LEVGGRTAVDFIDNGSGIAPEDTELIFEKF--SRLTD 844


>gi|329940010|ref|ZP_08289292.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus
          M045]
 gi|329300836|gb|EGG44732.1| DNA topoisomerase IV subunit B [Streptomyces griseoaurantiacus
          M045]
          Length = 707

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D         +E V+   G    ++ DNG G+  +
Sbjct: 59 EIIDNSVDESLGGHCDHIEVVLHDDG--SVEVRDNGRGIPVD 98


>gi|326507944|dbj|BAJ86715.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 378

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 26  AIKELIENSLDA---ESSRVET-VIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           AI EL++N++D     ++ V          G     + D+G GM  + +   +    + K
Sbjct: 136 AIAELLDNAIDEVNNGATFVRVNKFTNPRDGSPSLLVQDDGGGMDPDALRCCMSFGFSDK 195

Query: 80  ISDDFSNIHTFGFR 93
            SD F   +  GF+
Sbjct: 196 QSDAFIGQYGNGFK 209


>gi|326507054|dbj|BAJ95604.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 26  AIKELIENSLDA---ESSRVET-VIAG--GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           AI EL++N++D     ++ V          G     + D+G GM  + +   +    + K
Sbjct: 136 AIAELLDNAIDEVNNGATFVRVNKFTNPRDGSPSLLVQDDGGGMDPDALRCCMSFGFSDK 195

Query: 80  ISDDFSNIHTFGFR 93
            SD F   +  GF+
Sbjct: 196 QSDAFIGQYGNGFK 209


>gi|313673000|ref|YP_004051111.1| multi-sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939756|gb|ADR18948.1| multi-sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 670

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 41  RVETVIAGGGKS-----FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +++ ++             +I DNG G+  E+I    Q   T+K
Sbjct: 587 KIDILLEPYKIDDVDFVSIKIKDNGCGIPREKIDKIFQPLYTTK 630


>gi|308174587|ref|YP_003921292.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607451|emb|CBI43822.1| two-component sensor histidine kinase [LytT] [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554510|gb|AEB25002.1| two-component sensor histidine kinase (LytT) [Bacillus
           amyloliquefaciens TA208]
 gi|328912914|gb|AEB64510.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 593

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 20  IERPSIAIKELIENSL--------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
           IE P   ++ L+EN+L        D+ +  V   ++ G     ++ DNG G+  E + + 
Sbjct: 470 IEIPPFVLQILVENALRHAFSRKQDSCAVNVSV-VSAGPSVLMRVGDNGRGIDPELLSVL 528

Query: 72  VQR 74
             R
Sbjct: 529 GNR 531


>gi|241667359|ref|ZP_04754937.1| heat shock protein 90 [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254875909|ref|ZP_05248619.1| heat shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
 gi|254841930|gb|EET20344.1| heat shock protein [Francisella philomiragia subsp. philomiragia
          ATCC 25015]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|228473015|ref|ZP_04057772.1| DNA topoisomerase II domain protein [Capnocytophaga gingivalis
          ATCC 33624]
 gi|228275597|gb|EEK14374.1| DNA topoisomerase II domain protein [Capnocytophaga gingivalis
          ATCC 33624]
          Length = 617

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+I+NS+D     A   ++E  I         + D G G+ 
Sbjct: 52 LKEVIDNSIDEFVMGAG-KQIEVRIEDN---KVSVRDFGRGIP 90


>gi|239624129|ref|ZP_04667160.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239520515|gb|EEQ60381.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 637

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +E  I     +   + D+G G+ 
Sbjct: 39 VYEIVDNAVDEALAGYCDSIEVTINED--NSITVVDDGRGIP 78


>gi|224367126|ref|YP_002601289.1| GyrB [Desulfobacterium autotrophicum HRM2]
 gi|223689842|gb|ACN13125.1| GyrB [Desulfobacterium autotrophicum HRM2]
          Length = 808

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 20 IERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          IE     + E+++NS+D   A    ++  +I         + DNG G+ 
Sbjct: 37 IEGLHHLVYEVVDNSIDEAMAGHCDKIIVIIHPD--QSVSVEDNGRGIP 83


>gi|188581760|ref|YP_001925205.1| DNA gyrase, B subunit [Methylobacterium populi BJ001]
 gi|179345258|gb|ACB80670.1| DNA gyrase, B subunit [Methylobacterium populi BJ001]
          Length = 815

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  V   +   G     ++DNG G+ ++
Sbjct: 50 EVVDNAIDEALAGHADLVTVTLNADG--SCTVSDNGRGIPTD 89


>gi|153932660|ref|YP_001382676.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153936458|ref|YP_001386227.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928704|gb|ABS34204.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932372|gb|ABS37871.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 349

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 40  SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +   I    GK    I DNG G+  E++        T K
Sbjct: 257 KTINLKIEEDTGKIIVSIEDNGIGIPKEDLGRVFNAFFTGK 297


>gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
 gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
          Length = 576

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 30  LIENSLD---AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI N++    A    V   +         ++ DNG G+   E P   +R  
Sbjct: 472 LIGNAITYTPAG-GEVSVSLKQSDSVIVIEVRDNGIGIEESEFPRIFERFY 521


>gi|72080449|ref|YP_287507.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448]
 gi|71913573|gb|AAZ53484.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 7448]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A  +S+++  I         I D+G G+ 
Sbjct: 41 EIVDNAVDEALAGFASKIKVTILDD--FKISIEDDGRGIP 78


>gi|71893463|ref|YP_278909.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J]
 gi|71851590|gb|AAZ44198.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae J]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A  +S+++  I         I D+G G+ 
Sbjct: 41 EIVDNAVDEALAGFASKIKVTILDD--FKISIEDDGRGIP 78


>gi|54020117|ref|YP_115783.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232]
 gi|53987290|gb|AAV27491.1| DNA gyrase subunit B [Mycoplasma hyopneumoniae 232]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A  +S+++  I         I D+G G+ 
Sbjct: 41 EIVDNAVDEALAGFASKIKVTILDD--FKISIEDDGRGIP 78


>gi|73541790|ref|YP_296310.1| sensor histidine kinase [Ralstonia eutropha JMP134]
 gi|72119203|gb|AAZ61466.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 472

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 30  LIENSL----DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++    D  S+  V       G +  Q+ D+G G+ S E     +R  
Sbjct: 368 LIDNAIRYAGD-GSTVTVRVAQEADGTAQLQVIDDGPGIASAEREDVFRRFY 418


>gi|76798992|ref|ZP_00781191.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
 gi|76585663|gb|EAO62222.1| DNA gyrase, B subunit [Streptococcus agalactiae 18RS21]
          Length = 599

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++NS+D   A  +  ++  I     +   + D+G G+  +
Sbjct: 2  VDNSIDEALAGFAGHIKVYIEPD--NSITVVDDGRGIPVD 39


>gi|325067578|ref|ZP_08126251.1| histidine kinase [Actinomyces oris K20]
          Length = 358

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 22  RPSIAIKELIENSL--DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
             +  +  +IENSL   A ++ V    A GG + F  I D G G+  +  P   +RH
Sbjct: 236 SLAQVLATVIENSLRYGAGTTSVSVRGANGGHAVFIDIADEGEGVAEDIAPHVFERH 292


>gi|322517437|ref|ZP_08070310.1| sensor histidine kinase CsrS [Streptococcus vestibularis ATCC
           49124]
 gi|322123919|gb|EFX95478.1| sensor histidine kinase CsrS [Streptococcus vestibularis ATCC
           49124]
          Length = 505

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 40  SRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTS 78
             ++  I         Q+ DNG G++ E+I    +R   S
Sbjct: 405 KEIQVTIKALEDEMLVQVQDNGEGISKEDIEHIFERFYRS 444


>gi|325104897|ref|YP_004274551.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Pedobacter saltans DSM 12145]
 gi|324973745|gb|ADY52729.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Pedobacter saltans DSM 12145]
          Length = 635

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
          +KE+++NS+D     A    ++  +         + D G G+    +   +   C SKI+
Sbjct: 47 LKEIVDNSIDEFVMGAG-KTIDISVYD---HKIYVRDYGRGIP---LGKVID--CVSKIN 97

Query: 82 D 82
           
Sbjct: 98 T 98


>gi|313205726|ref|YP_004044903.1| DNA topoisomerase type iia subunit b region 2 domain protein
          [Riemerella anatipestifer DSM 15868]
 gi|312445042|gb|ADQ81397.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Riemerella anatipestifer DSM 15868]
          Length = 619

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 9/43 (20%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+++NS+D     A   R+E  +        QI D G G+ 
Sbjct: 49 LKEILDNSIDEFRMKAG-KRIEIKLDD---RKVQIRDYGRGIP 87


>gi|308273268|emb|CBX29871.1| hypothetical protein N47_F15660 [uncultured Desulfobacterium sp.]
          Length = 665

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 31/96 (32%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ESSRVETVIAGGGKSFF----- 54
            I+ +    I+QI A   +            N+ DA     +V                 
Sbjct: 399 PIK-MDPSQIDQILANLCV------------NARDAITGVGKVTIETGNAVFDEIYCAGH 445

Query: 55  -----------QITDNGFGMTSEEIPMAVQRHCTSK 79
                       ++D+G GM  E +    + + TSK
Sbjct: 446 TGFVAGEYVLLSVSDDGCGMDKEILNQIFEPYFTSK 481


>gi|326772115|ref|ZP_08231400.1| sensor kinase, two-component system [Actinomyces viscosus C505]
 gi|326638248|gb|EGE39149.1| sensor kinase, two-component system [Actinomyces viscosus C505]
          Length = 358

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 22  RPSIAIKELIENSL--DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
             +  +  +IENSL   A ++ V    A GG + F  I D G G+  +  P   +RH
Sbjct: 236 SLAQVLATVIENSLRYGAGTTSVSVRGANGGHAVFIDIADEGEGVAEDIAPHVFERH 292


>gi|300024439|ref|YP_003757050.1| osmosensitive K channel signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526260|gb|ADJ24729.1| osmosensitive K channel signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 906

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +RV    A GG    ++TD+G G+  E +     +  
Sbjct: 805 TRVSITPATGGGLHIRVTDDGIGIPPEALNKVFDKFY 841


>gi|254496738|ref|ZP_05109597.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          drancourtii LLAP12]
 gi|254354033|gb|EET12709.1| DNA gyrase, subunit B (type II topoisomerase) [Legionella
          drancourtii LLAP12]
          Length = 805

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 44 EVVDNSIDEALAGYCKEIFVTIHSD--ESISVKDDGRGIPVD 83


>gi|225388933|ref|ZP_03758657.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme
          DSM 15981]
 gi|225044986|gb|EEG55232.1| hypothetical protein CLOSTASPAR_02674 [Clostridium asparagiforme
          DSM 15981]
          Length = 639

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   S+V   +   G     + DNG G+  E
Sbjct: 42 EIVDNAVDEHLAGFCSKVWVTLEADG--SCTVRDNGRGIPVE 81


>gi|167626779|ref|YP_001677279.1| heat shock protein 90 [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|189036252|sp|B0U0M7|HTPG_FRAP2 RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|167596780|gb|ABZ86778.1| chaperone HSP90, heat shock protein HtpG [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|157691492|ref|YP_001485954.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157680250|gb|ABV61394.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 544

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+ +A    E+  V   I   G     +++D+G G+  EE+     R  +SK
Sbjct: 445 LVDNAFEAVLNKETREVSLFITDIGFDIIIEVSDSGDGVGEEELSHIFTRGHSSK 499


>gi|254368980|ref|ZP_04984993.1| chaperone protein htpG [Francisella tularensis subsp. holarctica
          FSC022]
 gi|157121901|gb|EDO66071.1| chaperone protein htpG [Francisella tularensis subsp. holarctica
          FSC022]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|222479425|ref|YP_002565662.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452327|gb|ACM56592.1| DNA gyrase, B subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 645

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     +   I     +   ++D+G G+  +
Sbjct: 41 VYEVVDNSIDEALAGYCDDITVTIHDD--NSVSVSDDGRGIPVD 82


>gi|154249101|ref|YP_001409926.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
 gi|154153037|gb|ABS60269.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
          Length = 466

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 22  RPSIAIKELIENSL---DAESS-----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           R    I  L+ N++   D ++      R++  +  G      + DNG G+         +
Sbjct: 356 RIEQVIVNLLSNAIKFSD-QAKEKRFVRIDV-LDEGEIVKIIVEDNGIGIPESAFDKIFE 413

Query: 74  RHC 76
           R  
Sbjct: 414 RFY 416


>gi|57233676|ref|YP_180759.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195]
 gi|57224124|gb|AAW39181.1| DNA gyrase, B subunit [Dehalococcoides ethenogenes 195]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E++ NS+D   A    R++ +I   G     + DNG G+  +
Sbjct: 50 VYEIVYNSVDEAMAGVCDRIKVIIYKDG--SVSVEDNGRGIPID 91


>gi|56707508|ref|YP_169404.1| heat shock protein 90 [Francisella tularensis subsp. tularensis
          SCHU S4]
 gi|110669979|ref|YP_666536.1| heat shock protein 90 [Francisella tularensis subsp. tularensis
          FSC198]
 gi|224456572|ref|ZP_03665045.1| heat shock protein 90 [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254370051|ref|ZP_04986057.1| hypothetical protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874328|ref|ZP_05247038.1| heat shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|81597920|sp|Q5NHT8|HTPG_FRATT RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|123063576|sp|Q14J90|HTPG_FRAT1 RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|56604000|emb|CAG44989.1| Chaperone Hsp90, heat shock protein HtpG [Francisella tularensis
          subsp. tularensis SCHU S4]
 gi|110320312|emb|CAL08372.1| Chaperone Hsp90, heat shock protein HtpG [Francisella tularensis
          subsp. tularensis FSC198]
 gi|151568295|gb|EDN33949.1| hypothetical protein FTBG_01144 [Francisella tularensis subsp.
          tularensis FSC033]
 gi|254840327|gb|EET18763.1| heat shock protein [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|282158677|gb|ADA78068.1| heat shock protein 90 [Francisella tularensis subsp. tularensis
          NE061598]
          Length = 628

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|329961554|ref|ZP_08299635.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328531766|gb|EGF58595.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 478

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 30  LIENSL----DAESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++    D     VE  I     GG S  ++ DNG G + E+      + 
Sbjct: 365 LVDNAVKYSKDEG--EVEVEITSECSGGYSCIKVRDNGIGFSEEDKRKIFDKF 415


>gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 456

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             G K   ++ DNG G++ E IP   +R  
Sbjct: 372 EEGDKIIIEVEDNGIGISKENIPRLFERFY 401


>gi|317969916|ref|ZP_07971306.1| heat shock protein 90 [Synechococcus sp. CB0205]
          Length = 634

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 34/126 (26%)

Query: 27  IKELIENSLDA---------------ES-SRVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           ++EL+ N +DA                +  ++   I    K+   I+DNG GMT++E+  
Sbjct: 33  LRELVSNGVDAISKRRMASMAGDCSEGAEGKISIRIDREAKTL-TISDNGIGMTADEVKR 91

Query: 71  AVQRHCTSKISDDFSNIHT----------FGFRGEALPSIGAVSH-LTLMSRPP-QNNTG 118
            + +   S   D                  GF      S   V+  + L++R     +  
Sbjct: 92  YINQVAFSSAEDFLEKYKQESDAIIGHFGLGF-----YSSFMVAKQVELVTRSARGESEA 146

Query: 119 AQIAIS 124
            + +  
Sbjct: 147 VRWSCD 152


>gi|312886740|ref|ZP_07746347.1| two component transcriptional regulator, AraC family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300842|gb|EFQ77904.1| two component transcriptional regulator, AraC family
           [Mucilaginibacter paludis DSM 18603]
          Length = 914

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 30  LIENSL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N+L    D    R+   +     + F  + DNG G++ EE         
Sbjct: 520 LLSNALKFTNDNG--RIHIRLEQNSDRIFISVQDNGIGISEEEARHVFDHFY 569


>gi|300693469|ref|YP_003749442.1| sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
 gi|299075506|emb|CBJ34799.1| Sensor protein, Histidine kinase [Ralstonia solanacearum PSI07]
          Length = 492

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 21  ERPSIAIKELIENSL----DAESSRVET-VIAGGGKSFF--QITDNGFGMTSEEIPMAVQ 73
           E  +  ++ L++N++    D     V+      GG+     +I D G G+  EE     +
Sbjct: 360 EDAATLVENLLDNAVRETPDGGEVHVDVQRFEIGGRPMIELRIEDTGPGIPPEEREHVFE 419

Query: 74  RHC 76
           R  
Sbjct: 420 RFY 422


>gi|326789810|ref|YP_004307631.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326540574|gb|ADZ82433.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 440

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSN 86
           RV   +    K    + DNG G+   E+    +R    KI    + 
Sbjct: 325 RVSLTVKDN-KVRVTVKDNGIGIPKTELEYIFKRFA--KIDTSLNR 367


>gi|295396857|ref|ZP_06806985.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans
          ATCC 11563]
 gi|294974883|gb|EFG50582.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Aerococcus viridans
          ATCC 11563]
          Length = 707

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   +  +  +   +A  G +   +TDNG GM 
Sbjct: 58 VYEIVDNSIDEAFSGYADHITVTLAKDGSAI--VTDNGRGMP 97


>gi|218530346|ref|YP_002421162.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218522649|gb|ACK83234.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 23  PSIAIKELIENSLD---AESSR---VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
            +  +  L+ N++    A + R   +   ++  G     +++D+G G+  E +       
Sbjct: 631 LAQVVTNLVANAVVHGFAGAERPGTITVRVSALGALVRLEVSDDGGGIAPEHLGRIFDPF 690

Query: 76  CT 77
            T
Sbjct: 691 FT 692


>gi|148378275|ref|YP_001252816.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148287759|emb|CAL81825.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 352

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 40  SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +   I    GK    I DNG G+  E++        T K
Sbjct: 260 KTINLKIEEDTGKIIVSIEDNGIGIPKEDLGRVFNAFFTGK 300


>gi|219849275|ref|YP_002463708.1| putative anti-sigma regulatory factor, serine/threonine protein
          kinase [Chloroflexus aggregans DSM 9485]
 gi|219543534|gb|ACL25272.1| putative anti-sigma regulatory factor, serine/threonine protein
          kinase [Chloroflexus aggregans DSM 9485]
          Length = 142

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 15 AAG---EIIERPSIAIKELIENSLDAE-----SSRVETVIAGGGKSF-FQITDNGFGMTS 65
          AAG   E +E   +A+ E + N++D       +  V  +    G     +I+D G G+  
Sbjct: 28 AAGLSPEQVEDLKLAVSEAVNNAIDHGNRGDTAKLVGVIFDIDGDKLEIRISDQGSGIEQ 87

Query: 66 EEIP 69
           ++ 
Sbjct: 88 LDVS 91


>gi|27379466|ref|NP_770995.1| DNA topoisomerase IV subunit B [Bradyrhizobium japonicum USDA 110]
 gi|27352618|dbj|BAC49620.1| DNA gyrase subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 681

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +   ++  G  F  +TDNG G+  +
Sbjct: 74  EVIDNSMDEALAGHATFIGVELSADG--FLTVTDNGRGIPID 113


>gi|15616474|ref|NP_244780.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|41688517|sp|Q9K620|BCES_BACHD RecName: Full=Sensor protein BceS
 gi|10176537|dbj|BAB07631.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 334

 Score = 41.6 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            S  +++L+ N++  +E+S +        GK+  ++TD G G+  +++P   ++  TS
Sbjct: 221 LSFILRQLLSNAVKYSEASDIIIKSDVVSGKTVVEVTDFGRGIEPKDLPRIFEKGFTS 278


>gi|308067145|ref|YP_003868750.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856424|gb|ADM68212.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 496

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 42  VETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP- 98
           ++  ++  GK     QI DNG GM+ E++    +R        D S   + G  G  L  
Sbjct: 408 IQVNLS-AGKKLVDIQIRDNGPGMSKEQLERIFERFY----RGDESRTRSSGGAGLGLAI 462

Query: 99  --SI 100
             SI
Sbjct: 463 TQSI 466


>gi|300782066|ref|YP_003762357.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299791580|gb|ADJ41955.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 9   KIINQIAAGEI--IERPSIAIKELIENSLDAE-SSR-----VETVIAGGGKS-FFQITDN 59
           ++  +I A E+  +  P + I+ L+EN++    +S+     V  +    G      + D+
Sbjct: 273 EVRMKI-APEVLSVVVPFLIIQPLVENAVKHGLASKPSGGCVTVIAQDYGTEALISVEDD 331

Query: 60  GFGMTSEEIPMAVQRHCT 77
           G GM    +      H T
Sbjct: 332 GIGMDPRRLKDVKNAHST 349


>gi|298485449|ref|ZP_07003534.1| hypothetical protein PSA3335_0863 [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298160018|gb|EFI01054.1| hypothetical protein PSA3335_0863 [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
          Length = 803

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II  I    AG        AI EL+ NS+DA+++ +   +   G   F   D+G G
Sbjct: 7  LDPEIIQHIIHSQAG----SIGKAIIELVMNSVDADATALRLTMTKEG---FHCADDGRG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            +  ++     R  T
Sbjct: 60 FASRNDVLRYFGRFGT 75


>gi|296447781|ref|ZP_06889695.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b]
 gi|296254700|gb|EFH01813.1| DNA topoisomerase IV, B subunit [Methylosinus trichosporium OB3b]
          Length = 672

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           E+++NS+D   A  +S +E  +   G  +  + DNG G+ 
Sbjct: 67  EVLDNSMDEAVAGHASFIEVSLEPDG--WLTVIDNGRGIP 104


>gi|238792685|ref|ZP_04636317.1| Sensor kinase dpiB [Yersinia intermedia ATCC 29909]
 gi|238728041|gb|EEQ19563.1| Sensor kinase dpiB [Yersinia intermedia ATCC 29909]
          Length = 558

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 11/72 (15%)

Query: 30  LIENSLDAESSR------VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSKISD 82
           L++N+ +A          +E  ++  G S   ++ D+G G+  +      +R  +SK SD
Sbjct: 459 LLDNAFEASLKNPECDKQIEIYLSDEGNSLILEVADHGCGIDPQLQDNLFERGISSKNSD 518

Query: 83  D----FSNIHTF 90
           +       + T+
Sbjct: 519 EHGIGLYLVATY 530


>gi|323341105|ref|ZP_08081353.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          ruminis ATCC 25644]
 gi|323091526|gb|EFZ34150.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Lactobacillus
          ruminis ATCC 25644]
          Length = 652

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N +D   A     +   +     +   + DNG G+  +
Sbjct: 54 EIIDNGIDEALAGFCDEINVTVEKD--NSITVQDNGRGIPVD 93


>gi|115525523|ref|YP_782434.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115519470|gb|ABJ07454.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 894

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 36  DAESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
           DA S  V+  +   G    +I   DNG GMT E    A     T
Sbjct: 796 DAGS--VDIKVREAGADHVEILFEDNGCGMTHEVKRRAFDPFFT 837


>gi|89891250|ref|ZP_01202757.1| topoisomerase IV. subunit B [Flavobacteria bacterium BBFL7]
 gi|89516562|gb|EAS19222.1| topoisomerase IV.  subunit  B [Flavobacteria bacterium BBFL7]
          Length = 620

 Score = 41.6 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 30/173 (17%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+I+NS+D     +    +E  I G       + D G G+   ++   V +  T    
Sbjct: 46  VKEVIDNSIDEFVMGSG-KTIEVSIQG---ERVTVRDYGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -S---KISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            S   K S   + + T      A+ ++ +   +   +R  ++ +             +  
Sbjct: 102 DSRAFKKSVGLNGVGTK-----AVNALSSYFRVE-STRDGKSASAEFSRGELNDQEMLEE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTF 186
            +   GT +                K+ +     +  +++      P ++  F
Sbjct: 156 TSRRKGTKMTFV-------PDGEIFKNFKFRPEYVARMLKNYVYLNPGLTIMF 201


>gi|320321135|gb|EFW77277.1| hypothetical protein PsgB076_29335 [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 6  LSEKIINQI---AAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFG 62
          L  +II  I    AG        AI EL+ NS+DA+++ +   +   G   F   D+G G
Sbjct: 7  LDPEIIQHIIHSQAG----SIGKAIIELVMNSVDADATALRLTMTKEG---FHCADDGRG 59

Query: 63 M-TSEEIPMAVQRHCT 77
            +  ++     R  T
Sbjct: 60 FASRNDVLRYFGRFGT 75


>gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 456

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             G K   ++ DNG G++ E IP   +R  
Sbjct: 372 EEGDKIIIEVEDNGIGISKENIPRLFERFY 401


>gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 589

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 19/58 (32%)

Query: 30  LIENSL-----------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++            A S          G    +++D G G+  E++P    R  
Sbjct: 486 LVENAIRYSPPGKTVTVKAGS--------DNGLVQIEVSDEGPGIPEEDLPYIWDRFH 535


>gi|240172095|ref|ZP_04750754.1| DNA gyrase subunit B [Mycobacterium kansasii ATCC 12478]
          Length = 675

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 29  ELIENSLD---AE--SSRVETVIAGGGKSFFQITDNGFGMTSE---------EIPMAVQR 74
           E+++N++D   A   ++    ++  GG    ++ D+G G+            ++ M  Q 
Sbjct: 48  EVVDNAVDEAMAGYAATVSVVLLEDGG---VEVADDGRGIPVAMHASGIPTVDVVM-TQL 103

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K   D   I + G  G  +  + A+S  L +  +   +        S         
Sbjct: 104 HAGGKFDSDAYAI-SGGLHGVGVSVVNALSTRLEVEIKRDGHEWSQVYEKSEPMGLKQGA 162

Query: 134 VAMNPGTIVEVR 145
                GT V   
Sbjct: 163 PTKKTGTTVRFW 174


>gi|261346105|ref|ZP_05973749.1| swarming motility regulation sensor protein RssA [Providencia
           rustigianii DSM 4541]
 gi|282565758|gb|EFB71293.1| swarming motility regulation sensor protein RssA [Providencia
           rustigianii DSM 4541]
          Length = 455

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 12/55 (21%)

Query: 30  LIENSLD-----AESSRVETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LIEN++      A   +++  I      G +   I DNG G+  EE      R  
Sbjct: 359 LIENAIKYCPEKA---KIKVTIKNLSPFGAT-ITIQDNGRGIPDEEREHLFSRFY 409


>gi|197123814|ref|YP_002135765.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196173663|gb|ACG74636.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 581

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA---ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA              G    F+++D+G G+   ++    + + T+K
Sbjct: 478 LVRNALDAMPSGGRLRLVARRDGDAVAFEVSDSGAGIAPADLERVFEPYFTTK 530


>gi|159184842|ref|NP_354616.2| DNA topoisomerase IV subunit B [Agrobacterium tumefaciens str. C58]
 gi|159140126|gb|AAK87401.2| DNA gyrase subunit B [Agrobacterium tumefaciens str. C58]
          Length = 710

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  +TDNG G+  E  P
Sbjct: 108 EVIDNSMDEAVAGHANFIEVHLDAEG--FLTVTDNGRGIPVENHP 150


>gi|254372236|ref|ZP_04987727.1| chaperone Hsp90 [Francisella tularensis subsp. novicida
          GA99-3549]
 gi|151569965|gb|EDN35619.1| chaperone Hsp90 [Francisella novicida GA99-3549]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|152983849|ref|YP_001348857.1| sensor kinase RpeA [Pseudomonas aeruginosa PA7]
 gi|150959007|gb|ABR81032.1| sensor kinase RpeA [Pseudomonas aeruginosa PA7]
          Length = 428

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 24  SIAIKELIENSLDAES-SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           + A+  L+ N++   + SRVE  +   G++   ++ D+G G+ ++      +    S++ 
Sbjct: 324 ARAVINLLRNAI-RHAHSRVEIALLDLGETCQIRVNDDGPGIPADARQKIFEPF--SRL- 379

Query: 82  DDFSNIHTFGF 92
           DD  +  T GF
Sbjct: 380 DDSRDRSTGGF 390


>gi|319902120|ref|YP_004161848.1| ATP-binding region ATPase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417151|gb|ADV44262.1| ATP-binding region ATPase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 682

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    ++D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASIGEFKGELGDLTVHVSL---GKDTITVSDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++   +++ 
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSCKEDSQ 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AVKWTCD 147


>gi|298253469|ref|ZP_06977261.1| signal transduction histidine kinase [Gardnerella vaginalis 5-1]
 gi|297532864|gb|EFH71750.1| signal transduction histidine kinase [Gardnerella vaginalis 5-1]
          Length = 422

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTS 65
           I+QI A         A+++L+EN++          ++      G  +  ++ D G G+  
Sbjct: 309 ISQIQA---------AVRKLVENAITYSPKNSTVSLSASLSTDGQYAVIRVVDRGVGIDL 359

Query: 66  EEIPMAVQRHC 76
           ++     +R  
Sbjct: 360 QDQSRIFERFY 370


>gi|297242833|ref|ZP_06926771.1| signal transduction histidine kinase [Gardnerella vaginalis AMD]
 gi|296889044|gb|EFH27778.1| signal transduction histidine kinase [Gardnerella vaginalis AMD]
          Length = 426

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 11  INQIAAGEIIERPSIAIKELIENSLDAESSRVETVIA-----GGGKSFFQITDNGFGMTS 65
           I+QI A         A+++L+EN++          ++      G  +  ++ D G G+  
Sbjct: 313 ISQIQA---------AVRKLVENAITYSPKNSTVSLSASLSTDGQYAVIRVVDRGVGIDL 363

Query: 66  EEIPMAVQRHC 76
           ++     +R  
Sbjct: 364 QDQSRIFERFY 374


>gi|226952833|ref|ZP_03823297.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ATCC 27244]
 gi|294648699|ref|ZP_06726159.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836454|gb|EEH68837.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter sp.
           ATCC 27244]
 gi|292825374|gb|EFF84117.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 822

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 62/252 (24%), Gaps = 36/252 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I         ++DNG G+      EE   A +      H
Sbjct: 56  EVVDNAIDEALAGHCDEILVTIHED--ESVSVSDNGRGIPTDIHPEEGVSAAEVILTILH 113

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKIS 129
              K  D+   + + G  G       AL S      L L           Q         
Sbjct: 114 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----KLQLTIHRAGQE--HQQEYHHGDPQ 165

Query: 130 SVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
               V         +   +                 +++   +R ++     V       
Sbjct: 166 YPLRVIGETDRTGTIVRFW----PSAETFSQTIFNVDILARRLRELSFLNAGVRIVLR-- 219

Query: 190 KSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
                  N     G   E +  +       N +       +  +     +   N      
Sbjct: 220 DERVNLENVYDYEGGLSEFVRYINEGKTHLNEIFHFTTDADNGISVEVALQW-NDSYQEN 278

Query: 250 FYVFINGRTVQD 261
              F N    +D
Sbjct: 279 VRCFTNNIPQKD 290


>gi|255623679|ref|XP_002540391.1| conserved hypothetical protein [Ricinus communis]
 gi|223496138|gb|EEF21992.1| conserved hypothetical protein [Ricinus communis]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIEN-SLDAESSRVETVI-AGGGKSFFQITDNGFG 62
           +L +      AA   I R    ++E + N +  A +S V   +    G+   QI D+G G
Sbjct: 157 RLDD------AASTAIFR---IVQEALTNIARHANASHVTMNLYRLNGELLIQIRDDGRG 207

Query: 63  MTSEEIPMA 71
           + +E++  A
Sbjct: 208 IKAEDMEKA 216


>gi|254516014|ref|ZP_05128074.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3]
 gi|219675736|gb|EED32102.1| DNA topoisomerase IV, B subunit [gamma proteobacterium NOR5-3]
          Length = 640

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP------- 69
            RP+   +E+I+NS+D   A  + +++ V+   G      +D+G GM  +  P       
Sbjct: 41  TRPNHLAQEIIDNSVDEALAGFARQIDVVLHTDG--SLSASDDGRGMPVDMHPEQKKPGV 98

Query: 70  --MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA-ISG 125
             +    H   K S       + G  G  +  + A+S  LT+  R          A    
Sbjct: 99  EVILCTLHAGGKFSSKNYQ-FSGGLHGVGVSVVNALSKQLTVTIRRDGEVHQMSFAGGEK 157

Query: 126 EKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFT 185
                V        T   VR           +  S       +  V+R  A+  P +  T
Sbjct: 158 TSELEVIDTCGKRNTGTNVR-----FTPDPQYFDSINFSVPRLQHVLRAKAVLCPGLRVT 212

Query: 186 FSTIKSN 192
           F   K N
Sbjct: 213 FFDEKKN 219


>gi|254424704|ref|ZP_05038422.1| GAF domain protein [Synechococcus sp. PCC 7335]
 gi|196192193|gb|EDX87157.1| GAF domain protein [Synechococcus sp. PCC 7335]
          Length = 1052

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 17/67 (25%)

Query: 30   LIENSLDA---------------ESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAV 72
            L+ N++DA               + SR+E    +        +I DNG GM  E +    
Sbjct: 936  LLANAIDALEERNQDRSEDSLEEDPSRIEITTSVHQPDSVAIRIADNGSGMPQEMLDSVF 995

Query: 73   QRHCTSK 79
                T+K
Sbjct: 996  DPFFTTK 1002


>gi|126731746|ref|ZP_01747551.1| probable two-component sensor histidine kinase protein [Sagittula
           stellata E-37]
 gi|126707912|gb|EBA06973.1| probable two-component sensor histidine kinase protein [Sagittula
           stellata E-37]
          Length = 388

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 37  AESSRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           A +SR+   +           + D+G G+       +   H
Sbjct: 318 AGASRISVTVDHPAPAILTITVRDDGCGIPVAPARKSGLMH 358


>gi|160881457|ref|YP_001560425.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160430123|gb|ABX43686.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 350

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 26  AIKELIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           AI++LI N+L    S  +   +    +    I D G G++ E++P   ++  T
Sbjct: 245 AIEQLISNALKYTNSGSISIYLDAELEDTLVIEDTGIGISPEDLPRVCEKGYT 297


>gi|86157261|ref|YP_464046.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773772|gb|ABC80609.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 439

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 30  LIENSLDA---ESSRVETVIAG----GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+LDA    +      +      GG +  ++ D G G+       A     T+K
Sbjct: 335 LVQNALDASPAGA---AVELEAAPGPGGGALIRVQDRGPGLDPAVRDAAFSPGFTTK 388


>gi|89255700|ref|YP_513061.1| heat shock protein 90 [Francisella tularensis subsp. holarctica
          LVS]
 gi|156501651|ref|YP_001427716.1| heat shock protein 90 [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|167010114|ref|ZP_02275045.1| chaperone protein HtpG [Francisella tularensis subsp. holarctica
          FSC200]
 gi|254367078|ref|ZP_04983112.1| chaperone protein hsp90 (heat shock protein htpG) [Francisella
          tularensis subsp. holarctica 257]
 gi|290954035|ref|ZP_06558656.1| heat shock protein 90 [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295312580|ref|ZP_06803336.1| heat shock protein 90 [Francisella tularensis subsp. holarctica
          URFT1]
 gi|118575190|sp|Q2A5E0|HTPG_FRATH RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|166223042|sp|A7N9V7|HTPG_FRATF RecName: Full=Chaperone protein htpG; AltName: Full=Heat shock
          protein htpG; AltName: Full=High temperature protein G
 gi|89143531|emb|CAJ78708.1| Chaperone Hsp90, heat shock protein HtpG [Francisella tularensis
          subsp. holarctica LVS]
 gi|134252902|gb|EBA51996.1| chaperone protein hsp90 (heat shock protein htpG) [Francisella
          tularensis subsp. holarctica 257]
 gi|156252254|gb|ABU60760.1| chaperone protein HtpG [Francisella tularensis subsp. holarctica
          FTNF002-00]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 19 IIERPSI----AIKELIENSLDA----------ESS--------RVETVIAGGGKSFFQI 56
          +I          ++EL+ NS DA           ++         +        K+   +
Sbjct: 19 VIHSLYSNREIFLRELVSNSSDAIEKLRYESISNAALNEDDTDYAIRIDFDKDAKT-ITV 77

Query: 57 TDNGFGMTSEEI 68
          +DNG GMT EE+
Sbjct: 78 SDNGIGMTEEEV 89


>gi|117923324|ref|YP_863941.1| DNA gyrase subunit B [Magnetococcus sp. MC-1]
 gi|117607080|gb|ABK42535.1| DNA gyrase subunit B [Magnetococcus sp. MC-1]
          Length = 812

 Score = 41.2 bits (95), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A    RVE ++   G     ++DNG G+ ++
Sbjct: 53 EVVDNAIDEALAGHCDRVEVILHTDG--SCSVSDNGRGIPTD 92


>gi|330960630|gb|EGH60890.1| hypothetical protein PMA4326_18993 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 544

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 31  IENSLDAESS--RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIH 88
           I+NS+ A++    +E V+   G+      DNG GM +E I  A  R+     + +  N  
Sbjct: 32  IDNSIAAKADVVNIEIVLRSDGRKLVYFGDNGDGMDAEGIFDA-MRYG----APERDNPE 86

Query: 89  TFGFRGEAL--PSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPVAM 136
           + G  G  L   S  +V    TL+SR       +++A   E ++S     M
Sbjct: 87  SLGKFGLGLKTAS-SSVCLKYTLISRRSGGVKLSKLAWDLEHVASENKWEM 136


>gi|330444051|ref|YP_004377037.1| DNA gyrase B [Chlamydophila pecorum E58]
 gi|328807161|gb|AEB41334.1| DNA gyrase B [Chlamydophila pecorum E58]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 87/262 (33%), Gaps = 24/262 (9%)

Query: 28  KELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISD 82
           KE+++N++D       S +E        +   + D G G+   ++     +  T +K ++
Sbjct: 44  KEVVDNAIDEYIMGHGSSLEITSKENTLT---VRDYGRGIPLGKLIDCASKINTGAKYTE 100

Query: 83  DFSNIHTFGFRGEALPSIGAV-SHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTI 141
           D  + ++ G  G  L ++ A+ S  T+ S   + +  A       + +         GT 
Sbjct: 101 DVFH-YSVGLNGVGLKAVNALSSEFTIRSIRNKKSLKAYYRQGVLQETQQSSTKDPNGTE 159

Query: 142 VEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIK-----SNRYKM 196
           V                 + + +   +   IR+    +P +   F++         +   
Sbjct: 160 VSFT-------PDAEIFANFRFQQEFLIKKIRQYTYVHPGLEILFNSESFVSKEGLKDLF 212

Query: 197 NFQSTNGNFPERISQVIGE-DFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
           + +   G     I     +  FI + ++ + +     + G   +      +A +  V   
Sbjct: 213 HAEVPQGALYPPIFFQKDKLSFIFSHLDTHTERYTSFVNGQETLDGGTHLSAFKEAVVKG 272

Query: 256 -GRTVQDKFILSTIRTAYAETI 276
                   F  + IR      +
Sbjct: 273 INEFFGKNFATNDIREGLMGCL 294


>gi|311067879|ref|YP_003972802.1| histidine kinase phosphorylating Spo0A [Bacillus atrophaeus 1942]
 gi|310868396|gb|ADP31871.1| histidine kinase phosphorylating Spo0A [Bacillus atrophaeus 1942]
          Length = 499

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 14/67 (20%)

Query: 18  EIIERPSIAIKELIENSL----DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAV 72
           ++I   +       +NSL    D    ++   +     K+  ++ DNG G++ E +    
Sbjct: 400 QVILNVA-------KNSLESMQDGG--KLSISLGAADQKAIIKVIDNGEGISKEMLEHIF 450

Query: 73  QRHCTSK 79
               TSK
Sbjct: 451 LPFVTSK 457


>gi|310817572|ref|YP_003949930.1| DNA gyrase subunit B [Stigmatella aurantiaca DW4/3-1]
 gi|309390644|gb|ADO68103.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 817

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 18/72 (25%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----------SEEIPMA 71
           + E+++N++D   A   + +   I   G     + DNG G+             + + + 
Sbjct: 52  VYEVVDNAVDEALAGYCTEISVDIHVDG--SLSVQDNGRGIPVGPHPDPKFHDKDTVDVV 109

Query: 72  V-QRHCTSKISD 82
           + + H  SK  +
Sbjct: 110 LTELHAGSKFGN 121


>gi|297571340|ref|YP_003697114.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
          DSM 20595]
 gi|296931687|gb|ADH92495.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
          DSM 20595]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          E+I+N++D A    ++ +   +     +  +++D+G G+  +E+P
Sbjct: 44 EIIDNAVDEATEGFATSISITLHPD--TSVEVSDDGRGIPVDEVP 86


>gi|295097508|emb|CBK86598.1| Signal transduction histidine kinase regulating citrate/malate
           metabolism [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 545

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 15/79 (18%)

Query: 25  IAIKELIENSLDAESSR--------VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
             I  L++N++  E+++        V+ +I    +    ++ D G G+T E      +R 
Sbjct: 425 SIIGNLLDNAI--EATQRAPLPHAPVDVLIKLNEQELIIEVADQGVGITPEIRDRIFERG 482

Query: 76  CTSKISDD----FSNIHTF 90
            T+K   D       I ++
Sbjct: 483 ITTKTRGDHGIGLYLIESY 501


>gi|260913523|ref|ZP_05920001.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella
          dagmatis ATCC 43325]
 gi|260632463|gb|EEX50636.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Pasteurella
          dagmatis ATCC 43325]
          Length = 806

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I     +   + D+G G+  +
Sbjct: 46 EVVDNSIDEALAGYAKDITVTIHTD--NSVSVQDDGRGIPVD 85


>gi|256821232|ref|YP_003145195.1| DNA gyrase subunit B [Kangiella koreensis DSM 16069]
 gi|256794771|gb|ACV25427.1| DNA gyrase, B subunit [Kangiella koreensis DSM 16069]
          Length = 808

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   + DNG G+ +E
Sbjct: 44 EVVDNSIDEALAGHCTDIYVTIHSD--NSVSVRDNGRGIPTE 83


>gi|220928427|ref|YP_002505336.1| sensor with HAMP domain [Clostridium cellulolyticum H10]
 gi|219998755|gb|ACL75356.1| putative sensor with HAMP domain [Clostridium cellulolyticum H10]
          Length = 603

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 30  LIENSL--------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+ENS+        D     ++     G     ++ D+G GM+ E I   + R
Sbjct: 500 LVENSIYHGLKQKEDRGILIIKGEFENGEIK-IEVFDDGVGMSEENINRVLNR 551


>gi|115373779|ref|ZP_01461072.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115369178|gb|EAU68120.1| DNA gyrase, B subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 18/72 (25%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT-----------SEEIPMA 71
          + E+++N++D   A   + +   I   G     + DNG G+             + + + 
Sbjct: 9  VYEVVDNAVDEALAGYCTEISVDIHVDG--SLSVQDNGRGIPVGPHPDPKFHDKDTVDVV 66

Query: 72 V-QRHCTSKISD 82
          + + H  SK  +
Sbjct: 67 LTELHAGSKFGN 78


>gi|114776385|ref|ZP_01451430.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
 gi|114553215|gb|EAU55613.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
          Length = 706

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTS 78
             +++DNG G+  E++    +   TS
Sbjct: 490 CIRVSDNGPGIADEDLDHVFKPFWTS 515


>gi|92117840|ref|YP_577569.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
 gi|91800734|gb|ABE63109.1| DNA topoisomerase IV subunit B [Nitrobacter hamburgensis X14]
          Length = 683

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+N++D   A  ++ +   +A  G  F  +TDNG G+  +
Sbjct: 76  EVIDNAMDEALAGHATFIVVELAADG--FLTVTDNGRGIPVD 115


>gi|85860827|ref|YP_463029.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85723918|gb|ABC78861.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 506

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 25  IAIKELIENSLDA---------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
             I  ++ N+++A          + R+E     G      + D G G+  E++    +  
Sbjct: 405 QVILNIVFNAIEAMPEGGTLTLGARRIEKENREG--IEIMVRDTGKGIAREDLKNIFKPF 462

Query: 76  CTSK 79
            T+K
Sbjct: 463 YTTK 466


>gi|75675845|ref|YP_318266.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
 gi|74420715|gb|ABA04914.1| DNA topoisomerase IV subunit B [Nitrobacter winogradskyi Nb-255]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+N++D   A  ++ +   +A  G  F  +TDNG G+  +
Sbjct: 78  EVIDNAMDEALAGHATFIVVELAADG--FLTVTDNGRGIPVD 117


>gi|15603341|ref|NP_246415.1| DNA gyrase subunit B [Pasteurella multocida subsp. multocida str.
          Pm70]
 gi|12721859|gb|AAK03560.1| GyrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 806

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I     +   + D+G G+  +
Sbjct: 46 EVVDNSIDEALAGYAKDITVTIHTD--NSVSVQDDGRGIPVD 85


>gi|87118908|ref|ZP_01074807.1| C4-dicarboxylate transport sensor protein [Marinomonas sp. MED121]
 gi|86166542|gb|EAQ67808.1| C4-dicarboxylate transport sensor protein [Marinomonas sp. MED121]
          Length = 745

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)

Query: 17  GEIIERPSIAIKELIENSLDA--ES----SRVETVIA----GGGKS----FFQITDNGFG 62
           G+++      +  LI N++DA  ES    +R+E VI       GKS      ++ D G G
Sbjct: 609 GDVVL-LEQVLVNLIANAIDAIMESEHTQNRIELVIEALDSDKGKSASWLTIKVRDTGNG 667

Query: 63  MTSEEIPMAVQRHCTSK 79
           M  + +    +   TSK
Sbjct: 668 MDDQVLASLFEPFFTSK 684


>gi|121601805|ref|YP_989593.1| DNA gyrase subunit B [Bartonella bacilliformis KC583]
 gi|120613982|gb|ABM44583.1| DNA gyrase, B subunit [Bartonella bacilliformis KC583]
          Length = 809

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +   G     + DNG G+ ++
Sbjct: 48 VYEVVDNAIDEALAGYATLVNVTLHADG--SCSVCDNGRGIPTD 89


>gi|328954619|ref|YP_004371952.1| DNA gyrase subunit B [Coriobacterium glomerans PW2]
 gi|328454943|gb|AEB06137.1| DNA gyrase subunit B [Coriobacterium glomerans PW2]
          Length = 674

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   +R+   I     +   + DNG G+  +
Sbjct: 41 VYEVVDNSVDEAMAGYCTRIGVTIHAD--NSVTVIDNGRGIPVD 82


>gi|326563889|gb|EGE14140.1| two-component system sensor histidine kinase [Moraxella catarrhalis
           46P47B1]
          Length = 590

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAV 72
               ++ L+ N+L  A+S+    +++ G   G++F  + D+G G++ E      
Sbjct: 456 LHRVVQNLVGNALRYAQST---IMLSAGVVKGEAFISVEDDGHGISEENREKVF 506


>gi|320160658|ref|YP_004173882.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994511|dbj|BAJ63282.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 528

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 21  ERPSIAIKELIENSLDAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQ 73
           E  +  +K        A++  +   +   G+S   +I D+G GM  E +P A  
Sbjct: 448 EALNNIVKH-------AQARNLFVHVVQSGQSLILRIEDDGVGMDVENLPPAGM 494


>gi|309367027|emb|CAP20393.2| hypothetical protein CBG_23571 [Caenorhabditis briggsae AF16]
          Length = 1136

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            AI EL +N+ DA S+     +          + D+G GM+ +++   +    T K
Sbjct: 398 SAIAELTDNASDARSNNFYIDVVDTEWAEELHVMDDGIGMSRQDMLNVILFGKTQK 453


>gi|309775540|ref|ZP_07670540.1| sensory box histidine kinase PhoR [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916634|gb|EFP62374.1| sensory box histidine kinase PhoR [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 6/57 (10%)

Query: 24  SIAIKELIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           S  +  L+ N++   D     +       G  +  ++ D G G++  ++    +R  
Sbjct: 320 SQVVLNLLSNAIKYSDTG--TITLRTKQEGSWYVLEVADEGHGISKPDLEKIFERFY 374


>gi|307699824|ref|ZP_07636875.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16]
 gi|307614862|gb|EFN94080.1| DNA gyrase, B subunit [Mobiluncus mulieris FB024-16]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  +   G    ++ DNG G+   E P
Sbjct: 45 VYEVVDNSVDEALAGYCDHIEVTLQADG--SVKVCDNGRGIPVAEHP 89


>gi|306817507|ref|ZP_07451251.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus
          mulieris ATCC 35239]
 gi|304649731|gb|EFM47012.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Mobiluncus
          mulieris ATCC 35239]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  +   G    ++ DNG G+   E P
Sbjct: 45 VYEVVDNSVDEALAGYCDHIEVTLQADG--SVKVCDNGRGIPVAEHP 89


>gi|304383077|ref|ZP_07365552.1| chaperone HtpG [Prevotella marshii DSM 16973]
 gi|304335763|gb|EFM02018.1| chaperone HtpG [Prevotella marshii DSM 16973]
          Length = 713

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 42/179 (23%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++E++ N++DA                  S  V   +    K    I+D+G GMT +EI 
Sbjct: 58  LREMVSNAVDATQKMKTLSERGEYKGDLGSLTVSVQLNK-EKKTITISDHGLGMTEDEID 116

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  D+ + I      GF      S   VS  + +++R   +++ 
Sbjct: 117 KYINQIAFSGVTDFLDKYKDNANAIIGHFGLGF-----YSAFMVSDRVEIITRSYKEDSK 171

Query: 118 GAQIAISGEKISSVRPVA-MNPGTIV------EVRDLFFTIPARLNFLKSEQVETNLIT 169
             + +  G     V  V     GT +      + ++       +    K  +     I 
Sbjct: 172 AVKWSCDGSPEYEVEEVDKAERGTDIVLHIADDCKEFLEKERIQALLNKYCRFMAVPIA 230


>gi|294054929|ref|YP_003548587.1| integral membrane sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614262|gb|ADE54417.1| integral membrane sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIAGGGKS-----FFQITDNGFGMTSEEIPMAV 72
           +R    I+ L+ N++   D+    VE  +   G       F +I D+G G+  E+     
Sbjct: 315 DRVVQVIRHLLSNAIRYSDSGRVEVELRVECDGVEGPADLFCRIEDSGPGIAPEDADAVY 374

Query: 73  QRH 75
           +  
Sbjct: 375 EPF 377


>gi|283834912|ref|ZP_06354653.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
 gi|291069175|gb|EFE07284.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
          Length = 988

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 10 IINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           I  +  G+I + P  A+ EL +NS DA +  V      G +    + DNG GM+ E++
Sbjct: 14 TIEHLGKGQIADCP-TAVSELWKNSYDAYARDVALYTIDGVRPCGALIDNGCGMSLEQL 71


>gi|269977746|ref|ZP_06184706.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1]
 gi|269934050|gb|EEZ90624.1| DNA gyrase, B subunit [Mobiluncus mulieris 28-1]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  +   G    ++ DNG G+   E P
Sbjct: 45 VYEVVDNSVDEALAGYCDHIEVTLQADG--SVKVCDNGRGIPVAEHP 89


>gi|227876546|ref|ZP_03994657.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
          35243]
 gi|227842860|gb|EEJ53058.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
          35243]
          Length = 671

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D   A     +E  +   G    ++ DNG G+   E P
Sbjct: 45 VYEVVDNSVDEALAGYCDHIEVTLQADG--SVKVCDNGRGIPVAEHP 89


>gi|206562189|ref|YP_002232952.1| two-component regulatory system sensor kinase protein [Burkholderia
           cenocepacia J2315]
 gi|198038229|emb|CAR54182.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
          Length = 450

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 30  LIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N++     +    I     GG    ++ D+G G+  E++     R 
Sbjct: 352 LVDNAIKYGREQGCIEIRSSQDGGVISIRVQDDGPGVPEEDLSRLQDRF 400


>gi|118443713|ref|YP_877290.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134169|gb|ABK61213.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 553

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +++  I   G      + DNG G+  ++I M   R  
Sbjct: 431 KIKVNIHDDGDKLRITVRDNGIGIPEDKIHMIFDRFT 467


>gi|150398443|ref|YP_001328910.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
 gi|150029958|gb|ABR62075.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 17/68 (25%)

Query: 17  GEIIERPSIAIKELIENSLDAES------SRVETVIAGG-GKSFFQITDNGFGMTSEEIP 69
           G+II         LIEN   A S       R+   +     +    + DNG G+ +E+I 
Sbjct: 464 GQIITN-------LIEN---ARSFVPEQNGRIIVRLTRSRSRCLVYVEDNGPGIQAEDID 513

Query: 70  MAVQRHCT 77
              +R  T
Sbjct: 514 RIFERFYT 521


>gi|72388569|gb|AAZ67928.1| DNA gyrase subunit B [Psychrobacter jeotgali]
          Length = 754

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 10/47 (21%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFG----MTSEE 67
          E+++NS+D   A    +++ VI         ++DNG G    +  EE
Sbjct: 21 EVVDNSIDEALAGHCDQIDIVIHED--ESVSVSDNGRGVPVDIHPEE 65


>gi|330952381|gb|EGH52641.1| sensor histidine kinase [Pseudomonas syringae Cit 7]
          Length = 170

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA-------ESS-RVETVIAGGGKSFFQIT 57
           L   + +++   +++         L+ N +DA       ++   +      GG   F ++
Sbjct: 51  LPPLLADRVQIQQVLLN-------LMLNGVDAMKKLEADQAQLEIRVGWHDGGDIEFAVS 103

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+  E I        T+K
Sbjct: 104 DNGIGVPPENIHRLFDAFYTTK 125


>gi|319901635|ref|YP_004161363.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319416666|gb|ADV43777.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 767

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 13/74 (17%)

Query: 1  MKIR-KLSEKIINQIAAGEIIERPSIA---IKELIENSLDAESSRVETVI----AGGGKS 52
          MKI   +S +  + I     +E  + A   I EL++N+ DA++  +  V+        +S
Sbjct: 1  MKIPFAISARTAHLIG----MENFANAEGAIVELVKNAYDADAD-ICVVVADVRENKAES 55

Query: 53 FFQITDNGFGMTSE 66
             I DNG GMT E
Sbjct: 56 KLFIIDNGSGMTDE 69


>gi|260772320|ref|ZP_05881236.1| flagellar sensor histidine kinase FleS [Vibrio metschnikovii CIP
           69.14]
 gi|260611459|gb|EEX36662.1| flagellar sensor histidine kinase FleS [Vibrio metschnikovii CIP
           69.14]
          Length = 350

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 14/73 (19%)

Query: 23  PSIAIKELIENSLD---AESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            + AI  L+ N++      + +++       G+    + DNG G+  E        H   
Sbjct: 238 LASAISNLVMNAIQIIGKGA-QIDVFFRAVNGELKISVQDNGPGIAPE-------LHH-- 287

Query: 79  KISDDFSNIHTFG 91
           KI + F    + G
Sbjct: 288 KIMEPFFTTRSQG 300


>gi|238917774|ref|YP_002931291.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
 gi|238873134|gb|ACR72844.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 22  RPSIAIKELIENSL----DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    I  LI+N++    D   S +   +   G K+   I D G G++ E+I     R  
Sbjct: 367 RIQQVIYNLIDNAIKFSKD--GSYIYITVKEKGEKAQISIKDTGCGISKEDIDKIWDRFY 424

Query: 77  TS 78
            S
Sbjct: 425 KS 426


>gi|227529858|ref|ZP_03959907.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
          49540]
 gi|227350227|gb|EEJ40518.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
          49540]
          Length = 648

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N +D   A   + +  ++     +   +TDNG G+  +
Sbjct: 52 EIVDNGIDEALAGFCNEINVIVEPD--NSISVTDNGRGIPVD 91


>gi|226310858|ref|YP_002770752.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093806|dbj|BAH42248.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 523

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 30  LIENSLDA------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN+ D+      +   +   I          + DNG GM  E     ++R  ++K
Sbjct: 417 LIENAFDSLERIERKEKEIMISIEQDDEICSILVEDNGIGMDEETRRHMLERGFSTK 473


>gi|255101078|ref|ZP_05330055.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-63q42]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++V   I    +    I+DNG GM+ EE      R+ 
Sbjct: 383 TKVCVHITLNERIEIIISDNGKGMSREEASNLFNRYY 419


>gi|207722049|ref|YP_002252487.1| two-component sensor kinase protein [Ralstonia solanacearum MolK2]
 gi|206587223|emb|CAQ17807.1| two-component sensor kinase protein [Ralstonia solanacearum MolK2]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 16  AGEIIERPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPM 70
           AGE      + ++ L++N++    D  S  ++  +   GG +   + D G G+ + E   
Sbjct: 335 AGE--LDLFVILRNLVDNAIRYTPDGGS--IDLSVRTDGGLAHITVQDTGPGIPAPERAR 390

Query: 71  AVQRHC 76
                 
Sbjct: 391 VFDAFY 396


>gi|251796502|ref|YP_003011233.1| DNA topoisomerase IV subunit beta [Paenibacillus sp. JDR-2]
 gi|247544128|gb|ACT01147.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. JDR-2]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A+  + ++  +   G     + DNG G+ 
Sbjct: 54 EIVDNAVDEHLAKFCTAIDVTLHKNGA--VTVQDNGRGIP 91


>gi|167759416|ref|ZP_02431543.1| hypothetical protein CLOSCI_01763 [Clostridium scindens ATCC 35704]
 gi|167662973|gb|EDS07103.1| hypothetical protein CLOSCI_01763 [Clostridium scindens ATCC 35704]
          Length = 454

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 23/84 (27%)

Query: 14  IAAG---EIIE---RPSIA-IKE---------LIENSL----DAESSRVETVI-AGGGKS 52
           IAA    E++    RP  A + E         L+EN++    D     +   + A     
Sbjct: 320 IAATRNIEVVFESFRPVTAEVDEMKLSLAISNLVENAIKYNKDDG--WIHVSLNADHKYC 377

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC 76
           + ++ D+G G+  E      +R  
Sbjct: 378 YIEVADSGIGIPEESAEHIFERFY 401


>gi|158522858|ref|YP_001530728.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158511684|gb|ABW68651.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 481

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 24/66 (36%)

Query: 30  LIENSLDAESSRVETVIAGGGKSF----------------FQITDNGFGMTSEEIPMAVQ 73
           L+ N+ DA        I   G+                   ++ DNG GM   ++     
Sbjct: 371 LLLNAADA--------IRDSGRKEGVITVTTASARDHLAAIEVADNGCGMPESDMDAIFN 422

Query: 74  RHCTSK 79
              T+K
Sbjct: 423 PFFTTK 428


>gi|83746148|ref|ZP_00943202.1| Two component system histidine kinase [Ralstonia solanacearum
           UW551]
 gi|207741837|ref|YP_002258229.1| two-component sensor histidine kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|83727114|gb|EAP74238.1| Two component system histidine kinase [Ralstonia solanacearum
           UW551]
 gi|206593221|emb|CAQ60148.1| two-component sensor histidine kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 444

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 16  AGEIIERPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPM 70
           AGE      + ++ L++N++    D  S  ++  +   GG +   + D G G+ + E   
Sbjct: 333 AGE--LDLFVILRNLVDNAIRYTPDGGS--IDLSVRTDGGLAHITVQDTGPGIPAPERAR 388

Query: 71  AVQRHC 76
                 
Sbjct: 389 VFDAFY 394


>gi|124265775|ref|YP_001019779.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258550|gb|ABM93544.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 394

 Score = 41.2 bits (95), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 17/59 (28%)

Query: 37  AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRG 94
           A ++RVE  +   G+    +++DNG G+                I +D +   +FG RG
Sbjct: 295 AYATRVEVDLTVAGRVLSLEVSDNGRGL----------------IQEDLAKARSFGIRG 337


>gi|332798030|ref|YP_004459529.1| DNA gyrase subunit B [Tepidanaerobacter sp. Re1]
 gi|332695765|gb|AEE90222.1| DNA gyrase, B subunit [Tepidanaerobacter sp. Re1]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I     +   + D+G G+ 
Sbjct: 41 VYEVVDNSIDEAMAGYCKNIKVTINKD--NSVTVEDDGRGIP 80


>gi|327394727|dbj|BAK12149.1| sensor kinase CitA [Pantoea ananatis AJ13355]
          Length = 545

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 25  IAIKELIENSLDAESSR--------VETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRH 75
             I  L++N++  E+++        VE +I    +    ++ D G G+T        +R 
Sbjct: 425 SVIGNLLDNAI--EATQRAPLPHEPVEVLIKLSTRELIIEVADRGVGITPAIRERMFERG 482

Query: 76  CTSKISDD 83
            T+K   D
Sbjct: 483 MTTKTRGD 490


>gi|313898674|ref|ZP_07832209.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
 gi|312956558|gb|EFR38191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 20  IERPSIAIKELIENSLDAESSRV----ETVIAGGGKS---FFQITDNGFGMTSEEIPMAV 72
           I  PS+ ++ L+EN++      +    E VI     +      ++DNG GM ++E+   +
Sbjct: 375 IPMPSMVLQPLVENAVSHGLQDIIEDGEVVIEVSRLNDEIMISVSDNGTGMPADELEKLI 434

Query: 73  Q 73
            
Sbjct: 435 L 435


>gi|312891078|ref|ZP_07750601.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296386|gb|EFQ73532.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 534

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 26  AIKELIENSLD-AESSRVETVI-AGGGKSFFQITDNGFG 62
            ++EL+ NS+  A+++ +   +         ++ D+G G
Sbjct: 449 IVQELVNNSIKHAQATVINITLLKKNNHIAIEVIDDGKG 487


>gi|300711735|ref|YP_003737549.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus
          jeotgali B3]
 gi|299125418|gb|ADJ15757.1| DNA topoisomerase II subunit B (DNA gyrase) [Halalkalicoccus
          jeotgali B3]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +   I   G     + D+G G+  +
Sbjct: 41 VYEVVDNAIDEALAGYCDTIGVTIHEDG--SVSVADDGRGIPVD 82


>gi|296131969|ref|YP_003639216.1| hypothetical protein TherJR_0431 [Thermincola sp. JR]
 gi|296030547|gb|ADG81315.1| conserved hypothetical protein [Thermincola potens JR]
          Length = 546

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 17/140 (12%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEI--PMAVQRHCTSKISD-DFSNIHTFGFRGEA- 96
            +   +    K    ITDNG G+ SE     +         I D + S+    GFRG   
Sbjct: 56  NIRIDLK---KKQIIITDNGIGIDSENAWNYLVG-------IGDSEKSHTEMRGFRGIGR 105

Query: 97  LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEV-RDLFFTIPARL 155
           L  I   + LT ++         +I     K+  +        T  ++ R +        
Sbjct: 106 LGGISYCNKLTFVTSSLGEKVKTEIVWDCAKLRELLQP--GKYTDYDLKRAVLEVTTLNQ 163

Query: 156 NFLKSEQVETNLITDVIRRM 175
               SE+    +I + +   
Sbjct: 164 TNEDSEKHYFKVILEEVNEK 183


>gi|291618335|ref|YP_003521077.1| CitA [Pantoea ananatis LMG 20103]
 gi|291153365|gb|ADD77949.1| CitA [Pantoea ananatis LMG 20103]
          Length = 548

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 25  IAIKELIENSLDAESSR--------VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
             I  L++N++  E+++        VE +I    +    ++ D G G+T        +R 
Sbjct: 428 SVIGNLLDNAI--EATQRAPLPHEPVEVLIKLSTRELLIEVADRGVGITPAIRERMFERG 485

Query: 76  CTSKISDD 83
            T+K   D
Sbjct: 486 MTTKTRGD 493


>gi|315502775|ref|YP_004081662.1| integral membrane sensor signal transduction histidine kinase
           [Micromonospora sp. L5]
 gi|315409394|gb|ADU07511.1| integral membrane sensor signal transduction histidine kinase
           [Micromonospora sp. L5]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 16  AGEIIERPSIAIKELIENSLDAES-SRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAV 72
           AGE        +  L++N+L   + S VE  ++   G      +TD+G G+ + +     
Sbjct: 349 AGE----LRRVLVNLVDNAL-RHAYSAVELAVSGPDGAYHLITVTDDGPGIPAADRERVF 403

Query: 73  QRHC 76
            R  
Sbjct: 404 ARFT 407


>gi|302866217|ref|YP_003834854.1| ATP-binding region ATPase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569076|gb|ADL45278.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 16  AGEIIERPSIAIKELIENSLDAES-SRVETVIA--GGGKSFFQITDNGFGMTSEEIPMAV 72
           AGE        +  L++N+L   + S VE  ++   G      +TD+G G+ + +     
Sbjct: 349 AGE----LRRVLVNLVDNAL-RHAYSAVELAVSGPDGAYHLITVTDDGPGIPAADRERVF 403

Query: 73  QRHC 76
            R  
Sbjct: 404 ARFT 407


>gi|227327490|ref|ZP_03831514.1| phosphate regulon sensor protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 21  ERPSIAIKELIENSLD---AESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E+   A+  L+ N+++   A  +R+E     I  G  + FQ++DNG G+ +E +P   +R
Sbjct: 316 EQLRSAVSNLVYNAVNHTPAG-TRIEVCWQKIPQG--AQFQVSDNGPGIAAEHLPRLTER 372

Query: 75  HC 76
             
Sbjct: 373 FY 374


>gi|227113362|ref|ZP_03827018.1| phosphate regulon sensor protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 21  ERPSIAIKELIENSLD---AESSRVET---VIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           E+   A+  L+ N+++   A  +R+E     I  G  + FQ++DNG G+ +E +P   +R
Sbjct: 316 EQLRSAVSNLVYNAVNHTPAG-TRIEVCWQKIPQG--AQFQVSDNGPGIAAEHLPRLTER 372

Query: 75  HC 76
             
Sbjct: 373 FY 374


>gi|255655900|ref|ZP_05401309.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-23m63]
 gi|296450678|ref|ZP_06892431.1| possible sensor histidine kinase [Clostridium difficile NAP08]
 gi|296879205|ref|ZP_06903200.1| possible sensor histidine kinase [Clostridium difficile NAP07]
 gi|296260522|gb|EFH07364.1| possible sensor histidine kinase [Clostridium difficile NAP08]
 gi|296429748|gb|EFH15600.1| possible sensor histidine kinase [Clostridium difficile NAP07]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++V   I    +    I+DNG GM+ EE      R+ 
Sbjct: 383 TKVCVHITLNERIEIIISDNGKGMSREEASNLFNRYY 419


>gi|254429302|ref|ZP_05043009.1| DNA gyrase, B subunit [Alcanivorax sp. DG881]
 gi|196195471|gb|EDX90430.1| DNA gyrase, B subunit [Alcanivorax sp. DG881]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 75/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ VI         I DNG G+      EE   A +      H
Sbjct: 43  EVVDNSIDEALAGFCSEIKVVIHPD--ESMSIQDNGRGIPTELHEEEGVSAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVR 132
              K  D+   + + G  G  +  + A+S    LT+           QI   G   + + 
Sbjct: 101 AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTI---RRNGQVHEQIYHHGVPANPLE 156

Query: 133 PVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
            V     +   V               + +   +++   +R ++     V       +S 
Sbjct: 157 VVGTTDSSGTAVH-----FRPSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSG 211

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
              +      G     +S +       N V       E           +N       + 
Sbjct: 212 DEDV--FEYEGGLSAFVSYLNTNKTALNQVFHFNFEREEDGIAVEVAMQWNDSYQENIFC 269

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 270 FTNNIPQRD 278


>gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42]
 gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L       S  +   I   G     I D+G G+  E++P   +R  
Sbjct: 489 LIDNALRHTESGGSVHIAAQIVKDGLK-IDIKDSGSGIPEEDLPFIFERFY 538


>gi|89074699|ref|ZP_01161157.1| DNA gyrase subunit B [Photobacterium sp. SKA34]
 gi|89049463|gb|EAR55024.1| DNA gyrase subunit B [Photobacterium sp. SKA34]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 73/247 (29%), Gaps = 24/247 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I   G     ++D+G G+      EE   A +      H
Sbjct: 42  EVVDNSIDEALAGHCEDIIVTIHEDG--SVSVSDDGRGIPTEIHEEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  + L     +     Q         +   V
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKVELT--IQRAGHTYQQVYRHGVPDAPLAV 156

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             +          +       +   + +    ++   +R ++     VS   S  +    
Sbjct: 157 IGDTEKTGTRIRFW----PSEDTFTNIEFHYEILAKRLRELSFLNSGVSINLS-DEREEG 211

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
           K +     G     +  +       +    +  S             +N G     Y F 
Sbjct: 212 KEDHFMYEGGIRAFVEHLNRNKTPIHPKVFHFDSERDDGISVEVAMQWNDGFQENIYCFT 271

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 272 NNIPQRD 278


>gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPS 99
           ++  V+     K    + DNG G+  E++P   +R        D +     G  G  L S
Sbjct: 477 QINVVLQKEEDKIKIIVKDNGPGIPEEDLPRIFERFY----RVDKARSRELGGSGLGL-S 531

Query: 100 IG 101
           I 
Sbjct: 532 IA 533


>gi|46201697|ref|ZP_00208212.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 18/73 (24%)

Query: 18  EIIERPS------------IAIKELIENSLD---AESSRVETVIAGGGKSFFQITDNGFG 62
           E+IE PS             A++ L+EN+L    A+S+ V   +     +  ++ D G G
Sbjct: 337 EVIESPSPCLITANAEAVFNALRNLVENALTHTPADST-VSVRVENP--AILRVEDRGPG 393

Query: 63  MTSEEIPMAVQRH 75
           + ++      QR 
Sbjct: 394 IPAQLRDRIFQRF 406


>gi|117925996|ref|YP_866613.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117609752|gb|ABK45207.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 378

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 31  IENSLDA-----ESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++NS+DA      +  ++    +    +    ITD G GM+ +++  A +   T+K
Sbjct: 275 LQNSIDACIACDRAPAIKVHATVVNRSRVMLSITDQGTGMSEQDVRSAFRLFATTK 330


>gi|237798753|ref|ZP_04587214.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021606|gb|EGI01663.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 638

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 17/70 (24%)

Query: 21  ERPSIAIKELIENSLDA-----------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
            R    +  LI N+LDA           E S ++      G+   Q+ DNG G+  E   
Sbjct: 519 TRLEQILVNLIGNALDAMFAQPQPELWLEGSIID------GRYRLQVRDNGHGIDDETRK 572

Query: 70  MAVQRHCTSK 79
              +   T+K
Sbjct: 573 HLFEPFFTTK 582


>gi|225874273|ref|YP_002755732.1| two-component sensor histidine kinase all1088 [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792101|gb|ACO32191.1| two-component sensor histidine kinase all1088 [Acidobacterium
           capsulatum ATCC 51196]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA---ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA    S+ +        G     ITD G G+  +E     +   T+K
Sbjct: 380 LLDNAIDAAPEGST-LTVRTWGEPGFVCVSITDQGPGIPEQEQKHIFEPFYTTK 432


>gi|261378873|ref|ZP_05983446.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685]
 gi|269144688|gb|EEZ71106.1| DNA topoisomerase IV, B subunit [Neisseria cinerea ATCC 14685]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVQIHEDG--SLSVRDNGRGIP 77


>gi|224539988|ref|ZP_03680527.1| hypothetical protein BACCELL_04900 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518393|gb|EEF87498.1| hypothetical protein BACCELL_04900 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 194

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 38/148 (25%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    ++D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASIGEFKGEVGDLTVHVSL---GKDTITVSDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHKEGAQ 140

Query: 118 GAQIAIS-GEKISSVRPVAMNPGTIVEV 144
             + +     + +       + GT + +
Sbjct: 141 AVKWSCDGSPEFTIENIDKADRGTDIVL 168


>gi|239820027|ref|YP_002947212.1| histidine kinase [Variovorax paradoxus S110]
 gi|239804880|gb|ACS21946.1| histidine kinase [Variovorax paradoxus S110]
          Length = 611

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 23  PSIAIKELIENSLDA-ESS-RVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
               +  L+ N++DA ++S R    +      G+   +++D G G+  + +P   +   +
Sbjct: 492 LGSVLVNLMRNAIDAMQASPRRRLRLEARPQEGRVILRVSDTGPGIPPDILPRLFEPFVS 551

Query: 78  SK 79
           SK
Sbjct: 552 SK 553


>gi|190891398|ref|YP_001977940.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696677|gb|ACE90762.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 527

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 38  ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC---TS 78
            +S +        G     I+D+G G+ +E++P+  QR+    TS
Sbjct: 423 GTSEIRIAAWEETGNVRVSISDDGVGIDAEDVPLLFQRYFRARTS 467


>gi|189465633|ref|ZP_03014418.1| hypothetical protein BACINT_01991 [Bacteroides intestinalis DSM
           17393]
 gi|189437907|gb|EDV06892.1| hypothetical protein BACINT_01991 [Bacteroides intestinalis DSM
           17393]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 38/148 (25%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    ++D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLKTLASIGEFKGEVGDLTVHVSL---GKDTITVSDRGIGLTAEEID 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSR-PPQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++   +   
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSHKEGAQ 140

Query: 118 GAQIAIS-GEKISSVRPVAMNPGTIVEV 144
             + +     + +       + GT + +
Sbjct: 141 AVKWSCDGSPEFTIENIDKADRGTDIVL 168


>gi|182415969|ref|YP_001821035.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
 gi|177843183|gb|ACB77435.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1295

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 22/86 (25%)

Query: 30   LIENSL----DA----ESSRV-ETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            LI N+     DA     + ++    I     G+    + DNG G+  E +        T 
Sbjct: 1171 LIRNAKYACDDAQLPEGTQKIMTVRIEPGENGRVRLIVRDNGVGIAPENLTRIFAHGFT- 1229

Query: 79   KISDDFSNIHTFGFRGEALPSIGAVS 104
                      ++G  G  L S  A+S
Sbjct: 1230 --------TRSYGH-GFGLHS-SAIS 1245


>gi|167767515|ref|ZP_02439568.1| hypothetical protein CLOSS21_02034 [Clostridium sp. SS2/1]
 gi|167710807|gb|EDS21386.1| hypothetical protein CLOSS21_02034 [Clostridium sp. SS2/1]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 31  IENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           ++N++   D + +++       G +    I DNG G+ + ++    ++  T
Sbjct: 230 VQNAIKYFDKQENKLTIYSQDNGTNILLVIEDNGCGIKASDLSRVFEKGFT 280


>gi|115524952|ref|YP_781863.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53]
 gi|115518899|gb|ABJ06883.1| DNA topoisomerase IV subunit B [Rhodopseudomonas palustris BisA53]
          Length = 685

 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  +  +E  ++  G  F  +TDNG G+  +
Sbjct: 78  EVIDNSMDEALAGHADFIEVELSADG--FLTVTDNGRGIPVD 117


>gi|332702373|ref|ZP_08422461.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552522|gb|EGJ49566.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 659

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 22  RPSIAIKELIENSLDA---------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMA 71
           R    +  L+ N+ DA            ++    +   G     ++D G G+  +++   
Sbjct: 545 RLQQVLFNLVSNARDAILDRGDRVPGDGKIVIRTSADNGSVTVSVSDTGVGIAEDDLHKV 604

Query: 72  VQRHCTSK 79
            +   T+K
Sbjct: 605 FEPFFTTK 612


>gi|331084822|ref|ZP_08333910.1| hypothetical protein HMPREF0987_00213 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410916|gb|EGG90338.1| hypothetical protein HMPREF0987_00213 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 337

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 31  IENSL---DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           ++N++   D + +++       G +    I DNG G+ + ++    ++  T
Sbjct: 233 VQNAIKYFDKQENKLTIYSQDNGTNILLVIEDNGCGIKASDLSRVFEKGFT 283


>gi|326407139|gb|ADZ64210.1| Two-component system sensor histidine kinase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 456

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 27  IKELI----ENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           IK+L+    +N+L    D     +   +   GG   F + DNG G++ E+      R 
Sbjct: 337 IKQLLTILFDNALKYTGDEG--EISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRF 392


>gi|312881308|ref|ZP_07741105.1| sensor histidine kinase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370948|gb|EFP98403.1| sensor histidine kinase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 461

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ DNG G++   +        T+K
Sbjct: 392 IRVKDNGCGISEASMEKIFSPFYTTK 417


>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
 gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 949

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R S  +  L++N++    D     VE  +     +   I DNG G+ S+ +P      
Sbjct: 697 DRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPSDALPKLFDPF 755


>gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 438

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + V       G     + D G G+  +++P    R  
Sbjct: 344 TTVTVK-KDSGTLSITVEDTGKGIPKKDLPYIFDRFY 379


>gi|281492255|ref|YP_003354235.1| Two-component system sensor histidine kinase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375926|gb|ADA65420.1| Two-component system sensor histidine kinase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 456

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 27  IKELI----ENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           IK+L+    +N+L    D     +   +   GG   F + DNG G++ E+      R 
Sbjct: 337 IKQLLTILFDNALKYTGDEG--EISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRF 392


>gi|270643352|ref|ZP_06222150.1| DNA mismatch repair protein mutL [Haemophilus influenzae HK1212]
 gi|270317300|gb|EFA28856.1| DNA mismatch repair protein mutL [Haemophilus influenzae HK1212]
          Length = 120

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 462 IIDLLEGECALIMEHDEDLHRLGIK-AERFGPNAIAIREIPAILSKKNIPQLLRDII 517
           +  L E +     ++ +D  ++G +  E      + +  +P++L  +N+ + +  ++
Sbjct: 1   MFRLTESQFQAWQQYSDDFKKIGFEFIENQAQLRLTLNRVPSLLRTQNLQKCVMAML 57


>gi|289811930|ref|ZP_06542559.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 193

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            + + R H   K S+      + G  G  +  + A+S  + +  R    
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQ 135


>gi|254975545|ref|ZP_05272017.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-66c26]
 gi|255092933|ref|ZP_05322411.1| putative two-component sensor histidine kinase [Clostridium
           difficile CIP 107932]
 gi|255314674|ref|ZP_05356257.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-76w55]
 gi|255517348|ref|ZP_05385024.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-97b34]
 gi|255650454|ref|ZP_05397356.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-37x79]
 gi|260683565|ref|YP_003214850.1| putative two-component sensor histidine kinase [Clostridium
           difficile CD196]
 gi|260687225|ref|YP_003218359.1| putative two-component sensor histidine kinase [Clostridium
           difficile R20291]
 gi|306520428|ref|ZP_07406775.1| putative two-component sensor histidine kinase [Clostridium
           difficile QCD-32g58]
 gi|260209728|emb|CBA63495.1| putative two-component sensor histidine kinase [Clostridium
           difficile CD196]
 gi|260213242|emb|CBE04756.1| putative two-component sensor histidine kinase [Clostridium
           difficile R20291]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++V   I    +    I+DNG GM+ EE      R+ 
Sbjct: 383 TKVCVHITLNERIEIIISDNGKGMSREEASNLFNRYY 419


>gi|213423770|ref|ZP_03356750.1| DNA topoisomerase IV subunit B [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 142

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
            RP+   +E+I+NS+D   A  + RV+ ++        ++ D+G GM      EE    +
Sbjct: 30  TRPNHLGQEVIDNSVDEALAGHAKRVDVILHAD--QSLEVIDDGRGMPVDIHPEEGVPAV 87

Query: 69  PMAVQR-HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN 115
            + + R H   K S+      + G  G  +  + A+S  + +  R    
Sbjct: 88  ELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQ 135


>gi|198433550|ref|XP_002131683.1| PREDICTED: similar to MORC family CW-type zinc finger protein 2
          (Zinc finger CW-type coiled-coil domain protein 1)
          [Ciona intestinalis]
          Length = 910

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 29 ELIENSLDAESSRVET-VIAGG---GKSFFQITDNGFGMTSEEIPMAVQ 73
          EL++N+ DA ++++    +A     G       D+G GM   ++   VQ
Sbjct: 34 ELVDNARDAAATKINVYSVANPDLRGGYMLNFLDDGEGMDPTDVANIVQ 82


>gi|261408285|ref|YP_003244526.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261284748|gb|ACX66719.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 369

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 40  SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           + +   I   G  +  +ITDNG GM ++ +    Q++ 
Sbjct: 278 TEIFVRITDAGEFAAIRITDNGIGMPADTVAHLFQQYY 315


>gi|160941457|ref|ZP_02088792.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
          BAA-613]
 gi|158435603|gb|EDP13370.1| hypothetical protein CLOBOL_06348 [Clostridium bolteae ATCC
          BAA-613]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     ++  I     +   + D+G G+  +
Sbjct: 39 VYEIVDNAVDEALAGYCDSIDVTINED--NSITVMDDGRGIPVD 80


>gi|148557472|ref|YP_001265054.1| DNA topoisomerase IV subunit B [Sphingomonas wittichii RW1]
 gi|148502662|gb|ABQ70916.1| DNA topoisomerase IV, B subunit [Sphingomonas wittichii RW1]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  ++R+E  +  G  +   + DNG G+  +
Sbjct: 53 EVLDNAMDEAVAGHANRIEVSLQVG--NRLTVIDNGRGIPVD 92


>gi|114704565|ref|ZP_01437473.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506]
 gi|114539350|gb|EAU42470.1| DNA topoisomerase IV subunit B [Fulvimarina pelagi HTCC2506]
          Length = 675

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ +E  +   G  F  ++DNG G+  +
Sbjct: 73  EVIDNSMDEATAGHANFIEVSLDTDG--FCTVSDNGRGIPID 112


>gi|15673656|ref|NP_267830.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724688|gb|AAK05772.1|AE006398_3 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 456

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 27  IKELI----ENSL----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           IK+L+    +N+L    D     +   +   GG   F + DNG G++ E+      R 
Sbjct: 337 IKQLLTILFDNALKYTGDEG--EISVDVQKNGGFLVFAVADNGEGISDEDKKKIFDRF 392


>gi|15889800|ref|NP_355481.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157728|gb|AAK88266.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 26  AIKELIENSLD-AESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           A+  L+ N++D A     +   I   G    ++ D G G+   E     +   
Sbjct: 373 AVVNLVRNAIDHAGGRGAITIRIDAAGA--IEVCDEGPGIPVPERGQVFEPFH 423


>gi|15602589|ref|NP_245661.1| TtrS [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721019|gb|AAK02808.1| TtrS [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 571

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 33  NSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           N+  A +S +E  +   G+     I DNG G  + E+        +SK
Sbjct: 477 NASQAGASEIEVNVKAVGEYMTIHIVDNGSGFKAGELAFPFVPFRSSK 524


>gi|326942456|gb|AEA18352.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 483

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|307825998|ref|ZP_07656212.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307732973|gb|EFO03836.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 619

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 22  RPSIAIKELIENSLDAE------SSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           R S  +  L++N   A       + ++E  +   G     Q+ DNG G+++  +P   
Sbjct: 352 RLSQVLLNLLDN---AGKYSLENA-QIEVDVQLYGTEVEIQVRDNGTGISAGLLPTIF 405


>gi|255264201|ref|ZP_05343543.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62]
 gi|255106536|gb|EET49210.1| DNA topoisomerase IV, B subunit [Thalassiobium sp. R2A62]
          Length = 652

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +         I DNG G+  +
Sbjct: 48 VAEVLDNSMDEAVAGHATRIEVELHTD--YSVTIRDNGRGIPID 89


>gi|227486682|ref|ZP_03916998.1| two-component sensor histidine kinase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227235394|gb|EEI85409.1| two-component sensor histidine kinase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 455

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 23  PSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
            S  I+ L+ N++ A       +++  +    K     + D G G+  ++IP   +R  
Sbjct: 335 LSQIIQNLVSNAIKAIGKDG--KIDIRLRETEKEILINVIDTGIGIKEDDIPRIFERFY 391


>gi|218778172|ref|YP_002429490.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218759556|gb|ACL02022.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 707

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 30  LIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L+ENS+    DA    V   +    G++  +++D G G+  + +    +
Sbjct: 607 LVENSVKFGKDARDKEVLITLKQEPGRTMVKVSDKGPGIPKKALKKVFK 655


>gi|160893407|ref|ZP_02074192.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
 gi|156864802|gb|EDO58233.1| hypothetical protein CLOL250_00956 [Clostridium sp. L2-50]
          Length = 638

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A   + +E  I     +   + DNG G+ 
Sbjct: 39 VYEIVDNSVDEALAGYCNHIEVFINPD--NSITVVDNGRGIP 78


>gi|229543410|ref|ZP_04432470.1| histidine kinase [Bacillus coagulans 36D1]
 gi|229327830|gb|EEN93505.1| histidine kinase [Bacillus coagulans 36D1]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 40  SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98
           + +   +    G     + D+G G+  E++P   +R        D S   +FG  G  L 
Sbjct: 368 TNIFLTVKKADGAWKLIVQDHGKGIPEEDLPYIFERFY----RVDKSRSRSFGGTGLGLA 423


>gi|146295090|ref|YP_001178861.1| DNA gyrase, B subunit [Caldicellulosiruptor saccharolyticus DSM
          8903]
 gi|145408666|gb|ABP65670.1| DNA gyrase subunit B [Caldicellulosiruptor saccharolyticus DSM
          8903]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     ++ +I     +   + D+G G+  +
Sbjct: 45 VYEIVDNAIDEAMAGFCKNIDVIIHRD--NSVTVLDDGRGIPVD 86


>gi|71275346|ref|ZP_00651632.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Xylella fastidiosa Dixon]
 gi|71901027|ref|ZP_00683138.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Xylella fastidiosa Ann-1]
 gi|170730269|ref|YP_001775702.1| two-component system, sensor protein [Xylella fastidiosa M12]
 gi|71163646|gb|EAO13362.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Xylella fastidiosa Dixon]
 gi|71729213|gb|EAO31333.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Xylella fastidiosa Ann-1]
 gi|167965062|gb|ACA12072.1| two-component system, sensor protein [Xylella fastidiosa M12]
          Length = 349

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 21  ERPSIAIKELIENSLDAESSRVET--VIAGGGKS---------FFQITDNGFGMTSEEIP 69
           +R + A+  L+ N++ A ++R+     +  G +            ++ D+G G+      
Sbjct: 229 DRLTQAVWNLVRNAIQAGANRITLRTRVEHGQRIRDRVNVISLRLEVIDDGDGVPEALAE 288

Query: 70  MAVQRHCTS 78
                  +S
Sbjct: 289 HVFLPLVSS 297


>gi|117924587|ref|YP_865204.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117608343|gb|ABK43798.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 378

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 31  IENSLDA-----ESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++NS+DA      +  ++    +    +    ITD G GM+ +++  A +   T+K
Sbjct: 275 LQNSIDACIACDRAPAIKVHATVVNRSRVMLSITDQGTGMSEQDVRSAFRLFATTK 330


>gi|306834848|ref|ZP_07467909.1| two component system sensor kinase [Corynebacterium accolens ATCC
           49726]
 gi|304569272|gb|EFM44776.1| two component system sensor kinase [Corynebacterium accolens ATCC
           49726]
          Length = 375

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASAALIHVADDGEGIPPDQLGHIFERFY 315


>gi|295979561|dbj|BAJ07453.1| DNA gyrase subunit B [Chromobacterium sp. MBIC3901]
          Length = 303

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  ++  I     +   + DNG G+ ++
Sbjct: 14 EVLDNAIDEALAGHADTIKVTINPD--NSVSVEDNGRGIPTD 53


>gi|269796464|ref|YP_003315919.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269098649|gb|ACZ23085.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 394

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 23  PSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              A++ L++N++   D   +RV   ++   G     + D G G+++ E     +R  
Sbjct: 265 LVTAVRNLLDNAVAYSD-GGTRVGVGVSAEDGLVSIAVVDQGIGISAAEQSRVFERFY 321


>gi|228941850|ref|ZP_04104397.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974775|ref|ZP_04135341.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785178|gb|EEM33191.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818062|gb|EEM64140.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|228981370|ref|ZP_04141670.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
 gi|228778570|gb|EEM26837.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
          Length = 485

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 371 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 430


>gi|254388579|ref|ZP_05003813.1| two-component system sensor [Streptomyces clavuligerus ATCC 27064]
 gi|294814011|ref|ZP_06772654.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442415|ref|ZP_08217149.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702300|gb|EDY48112.1| two-component system sensor [Streptomyces clavuligerus ATCC 27064]
 gi|294326610|gb|EFG08253.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 471

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 23  PSIAIKELIENSLDAES-------SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           P+   + L+ N LD  +       S VE  +  G  +   + D+G G+  EE+P   +R 
Sbjct: 358 PAALERALV-NVLD-NAVKFSPPGSTVEVRLRNGTLT---VRDHGPGIPPEELPHVFERF 412

Query: 76  CTS 78
             S
Sbjct: 413 WRS 415


>gi|187777119|ref|ZP_02993592.1| hypothetical protein CLOSPO_00664 [Clostridium sporogenes ATCC
           15579]
 gi|187774047|gb|EDU37849.1| hypothetical protein CLOSPO_00664 [Clostridium sporogenes ATCC
           15579]
          Length = 352

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 40  SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
             +   I          I DNG G+  E++        T K
Sbjct: 260 KTINLKIEEDTTKIIVSIEDNGIGIPKEDLGRVFNAFFTGK 300


>gi|170746814|ref|YP_001753074.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653336|gb|ACB22391.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 620

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N++DA + R    V   +   G+    ++ D G G+ +E          
Sbjct: 502 RLEQVLVNLLQNAIDAVAGRAEARVCLRLVESGERVAIEVADTGPGIPAEVCGQVFDAFF 561

Query: 77  TSK 79
           T+K
Sbjct: 562 TTK 564


>gi|161594063|ref|NP_899673.2| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 796

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  ++  I     +   + DNG G+ ++
Sbjct: 43 EVLDNAIDEALAGHADTIKVTINPD--NSVSVEDNGRGIPTD 82


>gi|146424684|dbj|BAF62102.1| DNA gyrase subunit B [Bradyrhizobium iriomotense]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++N++D   A  ++RV+ V+     +   + D+G G+  +
Sbjct: 1  VDNAIDEALAGHATRVDVVLNPD--NSVTVRDDGRGIPVD 38


>gi|148244172|ref|YP_001218866.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii
          HA]
 gi|146325999|dbj|BAF61142.1| DNA gyrase subunit B GyrB [Candidatus Vesicomyosocius okutanii
          HA]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   S++  +I         I DNG G+  +
Sbjct: 49 EVVDNAIDESLAGYCSKINIIIHED--KSVSINDNGRGIPID 88


>gi|71279877|ref|YP_270827.1| DNA topoisomerase IV subunit B [Colwellia psychrerythraea 34H]
 gi|71145617|gb|AAZ26090.1| DNA topoisomerase IV, B subunit [Colwellia psychrerythraea 34H]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           RP+   +E+I+NS+D   A  +  +  ++        +I D+G GM ++
Sbjct: 30 TRPNHLGQEVIDNSVDEALAGHAQNISVILEKD--QSLEIIDDGRGMPTD 77


>gi|34101314|gb|AAQ57683.1| DNA gyrase subunit B [Chromobacterium violaceum ATCC 12472]
          Length = 771

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  ++  I     +   + DNG G+ ++
Sbjct: 18 EVLDNAIDEALAGHADTIKVTINPD--NSVSVEDNGRGIPTD 57


>gi|89898785|ref|YP_515895.1| DNA topoisomerase IV subunit B [Chlamydophila felis Fe/C-56]
 gi|89332157|dbj|BAE81750.1| DNA gyrase subunit B [Chlamydophila felis Fe/C-56]
          Length = 602

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 17/168 (10%)

Query: 28  KELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISD 82
           KE+++N++D         +         +   + D+G G+   ++   V +  T +K + 
Sbjct: 44  KEVVDNAIDEFIMGHGKTISISTNA---TTITVRDSGRGIPLGKVIDCVSKINTGAKYTQ 100

Query: 83  DFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTI 141
           D  +  + G  G  L ++ A+S   T+ S   +    A       + S         GT 
Sbjct: 101 DVFH-FSVGLNGVGLKAVNALSETFTVRSVRKKQYHYATFCKGILQNSHQGSTKDPDGTE 159

Query: 142 VEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTI 189
           +                 +       +   IRR    +P +    +  
Sbjct: 160 ITFS-------PDATIFTNFSFNDEFLRKKIRRYTYLHPGLEIICNNE 200


>gi|15645128|ref|NP_207298.1| DNA gyrase subunit B [Helicobacter pylori 26695]
 gi|2501294|sp|P55992|GYRB_HELPY RecName: Full=DNA gyrase subunit B
 gi|2313611|gb|AAD07566.1| DNA gyrase, sub B (gyrB) [Helicobacter pylori 26695]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|163942502|ref|YP_001647386.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|229015265|ref|ZP_04172299.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
 gi|163864699|gb|ABY45758.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|228746028|gb|EEL95997.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  V+ ++        QI D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITVKVIVED--VIIVQIIDEGCGIPKDKIPKLNEAFYTTK 365


>gi|89099327|ref|ZP_01172204.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085936|gb|EAR65060.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 529

 Score = 41.2 bits (95), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++NS+DA       ++       G++   I D+G GM  E +    +   T+K
Sbjct: 427 LVQNSIDAMPEGGVVKISCRQTSTGEARILIEDSGCGMPEELLQNIKKPFFTTK 480


>gi|332702340|ref|ZP_08422428.1| DNA gyrase, B subunit [Desulfovibrio africanus str. Walvis Bay]
 gi|332552489|gb|EGJ49533.1| DNA gyrase, B subunit [Desulfovibrio africanus str. Walvis Bay]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A    R+  V+     +   ++DNG G+  +
Sbjct: 54 VYEVVDNSIDEAMAGYCDRIRVVLHLD--NSVTVSDNGRGIPVD 95


>gi|326473910|gb|EGD97919.1| hypothetical protein TESG_05220 [Trichophyton tonsurans CBS 112818]
 gi|326480909|gb|EGE04919.1| ankyrin repeat protein [Trichophyton equinum CBS 127.97]
          Length = 308

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 45/169 (26%), Gaps = 13/169 (7%)

Query: 107 TLMSRPPQNNTGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETN 166
           +L S+   + +  +            P   +  TI      ++ +       ++      
Sbjct: 123 SLTSKTAGSLSDGKCRSMWLGTYYGLPPHASSETIATFVRYWYNVSPPSRKRRAAAYRAL 182

Query: 167 LITDVIRRMAIAYPKVS--FTFST----------IKSNRYKMNFQSTNGNFPERISQVIG 214
            ++      A   P      TFS            +  R  +     +G +P     V  
Sbjct: 183 SLSASTNAAASFEPDRHSPLTFSHQDLAPRNIIVDEKFRLWLLDWDQSGWYPIYFEYVCM 242

Query: 215 EDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN-GRTVQDK 262
           ++F               +  +  +  F++         +N  R   D+
Sbjct: 243 QNFSIPFSWGLLAKFRWWMFCWVSVGIFSKEQEIFHQALMNFTRFAVDR 291


>gi|311898334|dbj|BAJ30742.1| putative two-component system sensor kinase [Kitasatospora setae
           KM-6054]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 21  ERPSIAIKELIENSLD---AESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ER    +  L++N+     A  +  V    A GG    ++ D G G+ + +     +R  
Sbjct: 267 ERLHQVVANLVDNACKHSPAGGTVTVRARAAEGGGLLLEVEDQGPGIPAADRERVFERFG 326

Query: 77  TS 78
            S
Sbjct: 327 RS 328


>gi|296313483|ref|ZP_06863424.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC
          43768]
 gi|296840002|gb|EFH23940.1| DNA topoisomerase IV, B subunit [Neisseria polysaccharea ATCC
          43768]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVRIHDDG--SLSVHDNGRGIP 77


>gi|294668239|ref|ZP_06733346.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309947|gb|EFE51190.1| DNA topoisomerase IV, B subunit [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 132

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 31 DSPTHICQEVIDNAADEALGGFATEIDVRIHDDG--SLSVHDNGRGIP 76


>gi|291287478|ref|YP_003504294.1| PAS/PAC sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884638|gb|ADD68338.1| PAS/PAC sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 721

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 30  LIENSLDA-------ESSR--VET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+ DA        ++   +E  VI         ++DNG G+ ++      + + T+K
Sbjct: 610 LVQNAKDAVEERREEFATDPLIEVGVIELDSSVQIYVSDNGSGIPADVADRIFEPYFTTK 669


>gi|262380670|ref|ZP_06073823.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164]
 gi|262297618|gb|EEY85534.1| DNA gyrase, B subunit [Acinetobacter radioresistens SH164]
          Length = 822

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 27/114 (23%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I         ++DNG G+      EE   A +      H
Sbjct: 56  EVVDNSIDEALAGHCDEILVTIHED--ESVSVSDNGRGIPTDIHPEEGVSAAEVILTILH 113

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
              K  D+   + + G  G       AL S      L L  +        +   
Sbjct: 114 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----KLELTVQRAGQIHEQEYQH 161


>gi|260576154|ref|ZP_05844147.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sp. SW2]
 gi|259021634|gb|EEW24937.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sp. SW2]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 25  IAIKELIENSLDA--E--SSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L++N++DA     ++++E       G+   ++ DNG G+             T+K
Sbjct: 338 QVVMNLVQNAVDALDGQPAAQIEISHRIEAGRGVLRLCDNGPGIPESLHQAVFDPFFTTK 397


>gi|257091666|ref|YP_003165307.1| DNA gyrase subunit B [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
 gi|257044190|gb|ACV33378.1| DNA gyrase, B subunit [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
          Length = 822

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A     +   I     +   +TDNG G+ 
Sbjct: 47 EVVDNAIDEALAGHCDEIVITIHAD--NSISVTDNGRGIP 84


>gi|255320699|ref|ZP_05361876.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82]
 gi|255302315|gb|EET81555.1| DNA gyrase, B subunit [Acinetobacter radioresistens SK82]
          Length = 822

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 27/114 (23%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     +   I         ++DNG G+      EE   A +      H
Sbjct: 56  EVVDNSIDEALAGHCDEILVTIHED--ESVSVSDNGRGIPTDIHPEEGVSAAEVILTILH 113

Query: 76  CTSKISDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
              K  D+   + + G  G       AL S      L L  +        +   
Sbjct: 114 AGGKFDDNSYKV-SGGLHGVGVSVVNALSS-----KLELTVQRAGQIHEQEYQH 161


>gi|255065021|ref|ZP_05316876.1| DNA gyrase subunit B [Neisseria sicca ATCC 29256]
 gi|255050442|gb|EET45906.1| DNA gyrase subunit B [Neisseria sicca ATCC 29256]
          Length = 155

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVRIHDDG--SLSVHDNGRGIP 77


>gi|241759917|ref|ZP_04758017.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114]
 gi|241319925|gb|EER56321.1| DNA topoisomerase IV, B subunit [Neisseria flavescens SK114]
          Length = 674

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 45 DSPTHICQEVIDNAADEALGGFATEIDVRIHDDG--SLSVHDNGRGIP 90


>gi|237751289|ref|ZP_04581769.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879]
 gi|229372655|gb|EEO23046.1| DNA gyrase subunit B [Helicobacter bilis ATCC 43879]
          Length = 775

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     ++  +   G +  +  D+G G+  +
Sbjct: 44 EVVDNSIDEAMAGFCKNIKITLTDKGSAIIE--DDGRGIPVD 83


>gi|261381418|ref|ZP_05985991.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284795595|gb|EFC50942.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 727

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 20 IERPSIAIKELIENSLDAESSRVETVIA---------GGGKSF---FQITDNGFGMTSE 66
          I+    AI EL++N+ DA+S  VE              G         + D G GM+ +
Sbjct: 23 IQDSYAAIVELVKNAYDADSESVEIHFKATEKPSENINGNPEKRIEITVRDYGHGMSQD 81


>gi|255305158|ref|ZP_05349330.1| sensor histidine kinase [Clostridium difficile ATCC 43255]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 30  LIENSLDAESS---RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           LI+N+LD  +    ++    +     +   ++D G G+  E+I    +R   SK S
Sbjct: 313 LIKNALD-NTKENDKIMIEWVETPITTIISVSDTGNGIHIEDIHHIFKRFYRSKFS 367


>gi|225076315|ref|ZP_03719514.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens
          NRL30031/H210]
 gi|224952439|gb|EEG33648.1| hypothetical protein NEIFLAOT_01356 [Neisseria flavescens
          NRL30031/H210]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVRIHDDG--SLSVHDNGRGIP 77


>gi|209693646|ref|YP_002261574.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238]
 gi|208007597|emb|CAQ77697.1| DNA gyrase subunit B [Aliivibrio salmonicida LFI1238]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S +   I         ++D+G G+ +E
Sbjct: 42 EVVDNSIDEALAGHCSDIIVTIHED--DSVSVSDDGRGIPTE 81


>gi|160947610|ref|ZP_02094777.1| hypothetical protein PEPMIC_01545 [Parvimonas micra ATCC 33270]
 gi|158446744|gb|EDP23739.1| hypothetical protein PEPMIC_01545 [Parvimonas micra ATCC 33270]
          Length = 492

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 43  ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +  I    K+  ++ DNG G++ +EI +   +  
Sbjct: 406 DIKIEED-KAIIEVIDNGCGISEDEISLVTGKFY 438


>gi|118593259|ref|ZP_01550644.1| two-component hybrid sensor and regulator [Stappia aggregata IAM
           12614]
 gi|118434150|gb|EAV40806.1| two-component hybrid sensor and regulator [Stappia aggregata IAM
           12614]
          Length = 543

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 24  SIAIKE-LIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           +  + E LI+NS    +SRV  +    GK    Q+ DNG G++            T
Sbjct: 434 ARIVFENLIDNSRRHGASRVAIIPEQAGKGLTVQVNDNGEGISEGNQGQVFDLFFT 489


>gi|159901580|ref|YP_001547826.1| putative signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894619|gb|ABX07698.1| putative signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 14/65 (21%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVI----AGGGKSFFQI 56
           KI  +S  I +     EII      +KE + NS+  A ++ +   I    +        I
Sbjct: 685 KIIPISTSIQH-----EII----RVVKEAVLNSIKHANATTITIEICYPNSNNSALRVII 735

Query: 57  TDNGF 61
           +DNG 
Sbjct: 736 SDNGS 740


>gi|40019243|emb|CAE92285.1| DNA gyrase subunit B [Legionella pneumophila]
          Length = 84

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I         + D+G G+  +
Sbjct: 14 EVVDNSIDESLAGYCKEIFVTIHSD--ESITVKDDGRGIPVD 53


>gi|71906324|ref|YP_283911.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71845945|gb|AAZ45441.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 535

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 15  AAGEI-IERPSI--AIKELIENSLDA------ESSRVETVIAGGGKSF--FQITDNGFGM 63
           AA  + ++R  I   ++ L+ N+ DA          +   +           ++D+G G+
Sbjct: 414 AATTVRVDRLQIELVLRNLLANAFDAIALRPEGPRHINVTVDAETDDTVTITVSDSGHGL 473

Query: 64  TSEEIPMAVQRHCTSK 79
           ++  +    +   +SK
Sbjct: 474 SASAVGSLFEPFTSSK 489


>gi|28210566|ref|NP_781510.1| two-component sensor histidine kinase [Clostridium tetani E88]
 gi|28203003|gb|AAO35447.1| two-component sensor histidine kinase [Clostridium tetani E88]
          Length = 480

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 22  RPSIAIKELIENSL--DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTS 78
               AI  L+ENS+  + + ++++  +     S   ++ DNG G+               
Sbjct: 369 NLYRAISNLLENSIKYNEKGTKIQVSLEEYEDSVGIEVVDNGIGIPK------------- 415

Query: 79  KISDDFSN 86
           K+  D  N
Sbjct: 416 KLKQDIFN 423


>gi|27378859|ref|NP_770388.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27352008|dbj|BAC49013.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 30  LIENSL--DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L EN++   A+ + V+  +   G    ++ D G G+   E  +  QR 
Sbjct: 352 LAENAIKFTAKDTSVDVEVGDDGV--VRVRDCGPGIADAERELIFQRF 397


>gi|331698582|ref|YP_004334821.1| histidine kinase [Pseudonocardia dioxanivorans CB1190]
 gi|326953271|gb|AEA26968.1| histidine kinase [Pseudonocardia dioxanivorans CB1190]
          Length = 470

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 39/93 (41%)

Query: 14  IAAGE----------IIERPSIAIKE-----------LIENSLDAESSRVETVIAGGG-- 50
           IAA E          +++     ++            L+EN+             G G  
Sbjct: 316 IAAAERVGRRTGRAIVVDADRSVVRGRRQALDRAVGNLMENA---------VKFDGSGVE 366

Query: 51  -------KSFFQITDNGFGMTSEEIPMAVQRHC 76
                  K    ++DNG G+  E+      R  
Sbjct: 367 PIQATAHKGRISVSDNGPGIDPEDAGRIFDRFY 399


>gi|329114577|ref|ZP_08243336.1| Nitrogen regulation protein NtrY-like protein [Acetobacter pomorum
           DM001]
 gi|326696057|gb|EGE47739.1| Nitrogen regulation protein NtrY-like protein [Acetobacter pomorum
           DM001]
          Length = 754

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 17/67 (25%)

Query: 30  LIENSLDA--------------ESSR--VETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           L++N+ DA               +++  V   I  G +    ++ DNG G+ S++     
Sbjct: 641 LLQNAADAIAMTARQGEATDQASATKGEVSVRIIEGAEDIAIEVADNGVGLPSDDRNRLT 700

Query: 73  QRHCTSK 79
           + + T K
Sbjct: 701 EPYVTHK 707


>gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 595

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 19/76 (25%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG-GGKSFFQITDNG 60
           KI++L   +IN I           AIK  IEN     S  V       GGK    + D G
Sbjct: 489 KIKQL---LINLI---------DNAIKYNIEN----GS--VTVKAEQAGGKVLISVRDTG 530

Query: 61  FGMTSEEIPMAVQRHC 76
            G+  E +    +R  
Sbjct: 531 IGIEKEYLDRIFERFY 546


>gi|307637178|gb|ADN79628.1| DNA gyrase subunit B [Helicobacter pylori 908]
 gi|325995767|gb|ADZ51172.1| DNA gyrase subunit B [Helicobacter pylori 2018]
 gi|325997363|gb|ADZ49571.1| DNA gyrase subunit B [Helicobacter pylori 2017]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|311744492|ref|ZP_07718292.1| sensor histidine kinase [Aeromicrobium marinum DSM 15272]
 gi|311312111|gb|EFQ82028.1| sensor histidine kinase [Aeromicrobium marinum DSM 15272]
          Length = 477

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 30  LIENSLD---AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L++N+     A  + V   + GG      ++D+G G++ +++P    R   S
Sbjct: 368 LLDNAAKWSPAGGT-VRVRLTGG---AVVVSDDGPGISPDDLPHVFDRFYRS 415


>gi|256831260|ref|YP_003159987.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603]
 gi|256684791|gb|ACV07684.1| DNA gyrase, B subunit [Jonesia denitrificans DSM 20603]
          Length = 686

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           + E+++NS+D   A     +   I   G    +++DNG G+ 
Sbjct: 61  VYEVVDNSVDEALAGHCDTINVTILEDGA--LEVSDNGRGIP 100


>gi|255024955|ref|ZP_05296941.1| sensor histidine kinase [Listeria monocytogenes FSL J1-208]
          Length = 180

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           ++       GK    I DNG G+  E++P   ++  T
Sbjct: 130 KIWCDTEASGKKVLHIKDNGRGINEEDLPRVFEQGFT 166


>gi|255099324|ref|ZP_05328301.1| sensor histidine kinase [Clostridium difficile QCD-63q42]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 30  LIENSLDAESS---RVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           LI+N+LD  +    ++    +     +   ++D G G+  E+I    +R   SK S
Sbjct: 313 LIKNALD-NTKENDKIMIEWVETPITTIISVSDTGNGIHIEDIHHIFKRFYRSKFS 367


>gi|208434424|ref|YP_002266090.1| DNA gyrase subunit B [Helicobacter pylori G27]
 gi|208432353|gb|ACI27224.1| DNA gyrase subunit B [Helicobacter pylori G27]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|169836756|ref|ZP_02869944.1| Sensory transduction histidine kinase [candidate division TM7
           single-cell isolate TM7a]
          Length = 317

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 17/84 (20%)

Query: 23  PSIAIKELIENSLDAES------SRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
              AI+ LIEN+    +      + +     I   G     I D G G++ E+      R
Sbjct: 172 LQQAIRALIENA----AKYSEPNTNIYIKSFIKD-GFGRISIRDEGVGISDEDAKRIFDR 226

Query: 75  HCTSKISDDFSNIHTFGFRGEALP 98
                   D S     G  G  L 
Sbjct: 227 FY----RVDLSRTKATGGTGLGLA 246


>gi|170581004|ref|XP_001895498.1| Hsp90 protein [Brugia malayi]
 gi|158597528|gb|EDP35652.1| Hsp90 protein [Brugia malayi]
          Length = 675

 Score = 41.2 bits (95), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 40/152 (26%)

Query: 27  IKELIENSLDA------------ESSRV--ETVI---AGGGKSFFQITDNGFGMTSEEIP 69
           I+ELI N+ DA            + + +  E  I              DNG GM  E++ 
Sbjct: 74  IRELISNASDALEKRRCKHLETNKDTNIAYEIKITTDEDA--RLIIFEDNGIGMDKEDLV 131

Query: 70  MAVQRHCTS---KISDD---FSNIHT--------FGFRGEALPSIGAVS-HLTLMSRPPQ 114
             +     S   K  ++    +   T         GF      S   V+ ++ + +R   
Sbjct: 132 NCLGTIAKSGSKKFMEEQSSLNRASTESIIGQFGVGF-----YSAFMVATNVVVKTRKED 186

Query: 115 NNTGAQIAISGEKISSVRPVA-MNPGTIVEVR 145
           ++ G     +G    SV  +  +  G+ +EV 
Sbjct: 187 SDKGYLWKWNGGDAYSVEEIDSLPVGSRIEVT 218


>gi|328957345|ref|YP_004374731.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673669|gb|AEB29715.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 583

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC 76
             ++ DNG G++ E++P    R  
Sbjct: 506 LIEVRDNGTGISEEDVPYVFDRFY 529


>gi|320156972|ref|YP_004189351.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus MO6-24/O]
 gi|319932284|gb|ADV87148.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus MO6-24/O]
          Length = 595

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 10  IINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQIT--DNGFGM 63
           +IN I   +++         LI N+++A    E+ ++   +    +    +   DNG G+
Sbjct: 482 VINTIQLEQVLIN-------LITNAIEAMENTEAKQLRITVDRALEQQICVHIDDNGPGI 534

Query: 64  TSEEIPMAVQRHCTSK 79
              +     +   T+K
Sbjct: 535 DPAKFAQLCEPFHTTK 550


>gi|296537346|ref|ZP_06899212.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
          cervicalis ATCC 49957]
 gi|296262326|gb|EFH09085.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Roseomonas
          cervicalis ATCC 49957]
          Length = 705

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+N++D   A  ++R + V+   G     +TD+G G+ ++
Sbjct: 56 EIIDNAVDEAQAGYATRCDVVLNADG--SVTVTDDGRGIPTD 95


>gi|270260779|ref|ZP_06189052.1| Hpt sensor hybrid histidine kinase [Serratia odorifera 4Rx13]
 gi|270044263|gb|EFA17354.1| Hpt sensor hybrid histidine kinase [Serratia odorifera 4Rx13]
          Length = 1070

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 6   LSEKIINQIAAGEII--ERPSIAIKELIENSLDAESS---RVETVI------AGGGKSFF 54
           LS    +Q+ A  +I  ER       LI N++  + +    ++  I         G+   
Sbjct: 670 LSVTASHQLPAAVVIDGERLLQVANNLINNAI--KFTPRGSIQVNIGWREQDKQQGELLL 727

Query: 55  QITDNGFGMTSEEIPMAVQRHC 76
            +TD+G G+ ++EI    Q   
Sbjct: 728 TVTDSGCGIAADEIGKLFQPFY 749


>gi|296134507|ref|YP_003641749.1| DNA gyrase, B subunit [Thiomonas intermedia K12]
 gi|294338443|emb|CAZ86769.1| DNA gyrase subunit B [Thiomonas sp. 3As]
 gi|295794629|gb|ADG29419.1| DNA gyrase, B subunit [Thiomonas intermedia K12]
          Length = 827

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 74/283 (26%), Gaps = 50/283 (17%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT------------SEEIPMAV 72
           E+++NS+D   A     +   I     +   +TDNG G+                  +A+
Sbjct: 46  EVVDNSIDEALAGFCDDIVVTIHSD--NSISVTDNGRGIPTGVKMDDKHEPKRSAAEIAL 103

Query: 73  -QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISS 130
            + H   K + +   + + G  G  +  + A+S  L L+ R        +      +   
Sbjct: 104 TELHAGGKFNQNSYKV-SGGLHGVGVSCVNALSQWLRLVVRRDGEVHTLEFVRGALQNRQ 162

Query: 131 VRPVAMNPGTI----------------------VEVRDLFFTIPARLNFLKSEQVETNLI 168
            + +     ++                          D  + + A+     S       I
Sbjct: 163 TQMIDGVEVSVAPITGKTDKRGTEVHFLPDAEIFTTVDFHYEVLAKRLRELSFLNHGVKI 222

Query: 169 TDVIRRMAIAYPKVSFTFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKS 228
             ++          +F+        +              I     E        ++ + 
Sbjct: 223 R-LVDERQGKEENFAFSGGVKG---FVEYINRGKSVLHPNIFYAQAEKASEVGSTISVEV 278

Query: 229 NEITLQGY---TGIPTFNRGNANQFYVFINGRTVQDKFILSTI 268
           +     GY       T N    +        R    + +   I
Sbjct: 279 SMQWNDGYAETVQCFTNNIPQRDGGTHLTGLRAAMTRVMNKYI 321


>gi|229093771|ref|ZP_04224870.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
 gi|228689656|gb|EEL43464.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|229180990|ref|ZP_04308325.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
 gi|228602547|gb|EEK60033.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|222084258|ref|YP_002542784.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221721706|gb|ACM24862.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 445

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LIEN++D     V   +          I D+G G   + +    + + T++  DD
Sbjct: 339 LIENAVDYARKTVTVTVEYDPALLIIIIEDDGNGYAPDILTRIGEPYVTTRQRDD 393


>gi|213159139|ref|YP_002321137.1| histidine kinase [Acinetobacter baumannii AB0057]
 gi|213058299|gb|ACJ43201.1| histidine kinase [Acinetobacter baumannii AB0057]
          Length = 269

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 24/111 (21%)

Query: 25  IAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----SK 79
            A+ EL +N+ DA +  VE   I    K+   + DNG GMT  E      R  T    SK
Sbjct: 24  TALSELFKNAHDAYADNVEVDYIKK--KNLLILRDNGLGMTRAEFE---DRWLTIGTDSK 78

Query: 80  ISDDFSNIH------------TFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
             +D   I               G +G    +I A+   + +M+R  ++N 
Sbjct: 79  F-EDEDAIEKPAIDINKDKRPVMGEKGIGRLAIAAIGPQVLVMTRSKRDNE 128


>gi|153812003|ref|ZP_01964671.1| hypothetical protein RUMOBE_02396 [Ruminococcus obeum ATCC 29174]
 gi|149831902|gb|EDM86988.1| hypothetical protein RUMOBE_02396 [Ruminococcus obeum ATCC 29174]
          Length = 385

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSI 100
           ++  +   G     +I DNG G+ S+++P    R        D S   + G  G  L SI
Sbjct: 294 IQIRVKDVGDFVQVEIEDNGKGIASKDLPYIFDRFY----RTDVSRNSSKGGSGIGL-SI 348


>gi|126435589|ref|YP_001071280.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
 gi|126235389|gb|ABN98789.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 31  IENSLDAES------SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           I+N++ A +      +++       G+     + DNG G+  +E  +  +R  
Sbjct: 352 IDNAI-ANAVKHGDATQIRLSAIRSGEDVEIAVDDNGSGVPEQERKLVFERFS 403


>gi|117618874|ref|YP_857329.1| two-component sensor kinase protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560281|gb|ABK37229.1| two-component sensor kinase protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 344

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            + A+  LI N+  A ++ +    +  G +   +I DNG GM +  +    +   T
Sbjct: 236 LAGAVNNLIANAQQAGATSLLVSAVRSGARVELRILDNGKGMPAHLLSQIFEPFFT 291


>gi|108799961|ref|YP_640158.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119869071|ref|YP_939023.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|108770380|gb|ABG09102.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119695160|gb|ABL92233.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
          Length = 451

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 8/53 (15%)

Query: 31  IENSLDAES------SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           I+N++ A +      +++       G+     + DNG G+  +E  +  +R  
Sbjct: 352 IDNAI-ANAVKHGDATQIRLSAIRSGEDVEIAVDDNGSGVPEQERKLVFERFS 403


>gi|37679285|ref|NP_933894.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus YJ016]
 gi|37198028|dbj|BAC93865.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus YJ016]
          Length = 605

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 13/76 (17%)

Query: 10  IINQIAAGEIIERPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQIT--DNGFGM 63
           +IN I   +++         LI N+++A    E+ ++   +    +    +   DNG G+
Sbjct: 492 VINTIQLEQVLIN-------LITNAIEAMENTEAKQLRITVDRALEQQICVHIDDNGPGI 544

Query: 64  TSEEIPMAVQRHCTSK 79
              +     +   T+K
Sbjct: 545 DPAKFAQLCEPFHTTK 560


>gi|86132461|ref|ZP_01051055.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
 gi|85817022|gb|EAQ38206.1| two-component system sensor histidine kinase [Dokdonia donghaensis
           MED134]
          Length = 351

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 22/78 (28%)

Query: 2   KIRKLSEKII-NQIAAGEIIERPSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITD 58
           +I++L   +I N I  G              EN     ++ V     I    K   +ITD
Sbjct: 239 RIQQLLTNLIGNSIKYGN-------------EN----GTTEVSIQDLIQN--KLLIRITD 279

Query: 59  NGFGMTSEEIPMAVQRHC 76
           NG G+  + +P   +R  
Sbjct: 280 NGEGIEPDHLPRLFERFY 297


>gi|114319170|ref|YP_740853.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225564|gb|ABI55363.1| DNA gyrase subunit B [Alkalilimnicola ehrlichii MLHE-1]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   S ++  I   G +   + DNG G+  +
Sbjct: 44 EVVDNSVDEALAGYCSEIQVTIH--GDNSVTVADNGRGIPVD 83


>gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 577

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 1   MKIRKLSEKIINQIAAGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKS-FFQ 55
           M I   +E+ +  I A   + R    +  L+ N+L    +     V   +  G ++   +
Sbjct: 451 MTIHLETEEEV-FIRAD--LNRLKQVVVNLVANAL--NYTPNGGNVWISLEDGEEAVMLR 505

Query: 56  ITDNGFGMTSEEIPMAVQRHC 76
           I D+G G+  +E+    +R  
Sbjct: 506 IKDDGIGIHPKEMQRIFERFY 526


>gi|329297784|ref|ZP_08255120.1| DNA gyrase subunit B [Plautia stali symbiont]
          Length = 802

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A   S +   I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNAIDEALAGHCSNIVVTIHAD--NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI----------- 123
              K  D+   + + G  G  +  + A+S  L L+ R                       
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSQKLELIIRRDGKEHQQTYVHGVPQAPLAVTG 158

Query: 124 SGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSE 161
             +   +      +  T   V D  + I A+     S 
Sbjct: 159 DTDATGTRVRFWPSHDTFTNVTDFEYEILAKRLRELSF 196


>gi|317012319|gb|ADU82927.1| DNA gyrase subunit B [Helicobacter pylori Lithuania75]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|254880970|ref|ZP_05253680.1| DNA topoisomerase IV subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294777378|ref|ZP_06742829.1| putative DNA topoisomerase [Bacteroides vulgatus PC510]
 gi|319639978|ref|ZP_07994705.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_40A]
 gi|254833763|gb|EET14072.1| DNA topoisomerase IV subunit B [Bacteroides sp. 4_3_47FAA]
 gi|294448446|gb|EFG16995.1| putative DNA topoisomerase [Bacteroides vulgatus PC510]
 gi|317388256|gb|EFV69108.1| DNA topoisomerase IV subunit B [Bacteroides sp. 3_1_40A]
          Length = 625

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+I+NS+D     A   ++E +I         + D G G+ 
Sbjct: 54 LKEIIDNSIDEFKMQAG-KKIEIIIEEN--LRVSVRDYGRGIP 93


>gi|237720666|ref|ZP_04551147.1| heat shock protein 90 [Bacteroides sp. 2_2_4]
 gi|260170229|ref|ZP_05756641.1| heat shock protein 90 [Bacteroides sp. D2]
 gi|293369440|ref|ZP_06616024.1| Hsp90 protein [Bacteroides ovatus SD CMC 3f]
 gi|299145619|ref|ZP_07038687.1| heat shock protein HtpG [Bacteroides sp. 3_1_23]
 gi|315918592|ref|ZP_07914832.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|229449501|gb|EEO55292.1| heat shock protein 90 [Bacteroides sp. 2_2_4]
 gi|292635480|gb|EFF53988.1| Hsp90 protein [Bacteroides ovatus SD CMC 3f]
 gi|298516110|gb|EFI39991.1| heat shock protein HtpG [Bacteroides sp. 3_1_23]
 gi|313692467|gb|EFS29302.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTVHVEL---GKDTITISDRGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++    +  
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYRDDAK 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AVKWTCD 147


>gi|220910789|ref|YP_002486098.1| DNA gyrase subunit B [Arthrobacter chlorophenolicus A6]
 gi|219857667|gb|ACL38009.1| DNA gyrase, B subunit [Arthrobacter chlorophenolicus A6]
          Length = 695

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 8/45 (17%)

Query: 27  IKELIENSLD---AE-SSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A   S +E V+   GG     + D+G G+  +
Sbjct: 67  VYEVVDNSVDEALAGYCSHIEIVLQADGGVK---VVDDGRGIPVD 108


>gi|150003803|ref|YP_001298547.1| DNA topoisomerase IV subunit B [Bacteroides vulgatus ATCC 8482]
 gi|149932227|gb|ABR38925.1| DNA topoisomerase IV subunit B [Bacteroides vulgatus ATCC 8482]
          Length = 625

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 8/43 (18%)

Query: 27 IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          +KE+I+NS+D     A   ++E +I         + D G G+ 
Sbjct: 54 LKEIIDNSIDEFKMQAG-KKIEIIIEEN--LRVSVRDYGRGIP 93


>gi|150398412|ref|YP_001328879.1| DNA gyrase subunit B [Sinorhizobium medicae WSM419]
 gi|150029927|gb|ABR62044.1| DNA gyrase, B subunit [Sinorhizobium medicae WSM419]
          Length = 811

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     +TDNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADLVTVTLNPDG--SVTVTDNGRGIPTD 91


>gi|78188880|ref|YP_379218.1| hypothetical protein Cag_0911 [Chlorobium chlorochromatii CaD3]
 gi|78171079|gb|ABB28175.1| hypothetical protein Cag_0911 [Chlorobium chlorochromatii CaD3]
          Length = 561

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 27/87 (31%)

Query: 22  RPSIAIKELIENSLDAESSRVETV---IAGG--GKSFFQITDNGFGMTSE------EIPM 70
            P   ++E I NS DA ++++      +          +I D+G GMT +      ++  
Sbjct: 22  NPLDLVREAISNSFDANANKIYLSFDMVKEYMDTNLRIRIVDDGEGMTLDGLQSFFDLGN 81

Query: 71  AVQR----------HCT------SKIS 81
           + +R          H T      SKIS
Sbjct: 82  STRRGIDGTIGEKGHGTKVYLNSSKIS 108


>gi|154245748|ref|YP_001416706.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159833|gb|ABS67049.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 537

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 25  IAIKELIENSLDAES--SRVETVIA----GGG--KSFFQITDNGFGMTSEEIPMAVQRH 75
             ++ LI+N+L      +R+   +A     GG       ++D+G G+  E      +R 
Sbjct: 418 QVVEGLIDNALRHGGKVTRIALAVATVAGAGGAVVDEITVSDDGRGIPPEARAALFKRF 476


>gi|86130199|ref|ZP_01048799.1| DNA topoisomerase IV subunit B [Dokdonia donghaensis MED134]
 gi|85818874|gb|EAQ40033.1| DNA topoisomerase IV subunit B [Dokdonia donghaensis MED134]
          Length = 618

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 37/245 (15%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT---- 77
           +KE+++N +D     A    +E  I   G+    + D G G+   ++   V +  T    
Sbjct: 46  VKEVLDNCIDEFVMGAG-KTIEISIQ--GEKVI-VRDYGRGIPLGKVVDVVSKMNTGGKY 101

Query: 78  -S---KISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            S   K S   + + T      A+ ++     +   +R  ++ +             +  
Sbjct: 102 DSRAFKKSVGLNGVGTK-----AVNALSNYFRVE-STRDGKSASAEFERGELTNQDLLDE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TFST 188
            +   GT V                K+ +  +  +  +I+      P ++       F +
Sbjct: 156 TSRRRGTKVSFV-------PDSEIFKNFKFRSEYVERLIKNYVYLNPGLTIVFNGEKFFS 208

Query: 189 IKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
               +  ++     G+    I  + GED          + +E       G          
Sbjct: 209 ENGLKDLLSESIAEGDRLYDIIHLKGEDIEVAITHSKTQYSEEYHSFVNG--QHTTQGGT 266

Query: 249 QFYVF 253
               F
Sbjct: 267 HQAAF 271


>gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
 gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
          Length = 878

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHC 76
             ++DNG G+  +++P    R  
Sbjct: 521 IMVSDNGCGIAQDDLPYVFDRFY 543


>gi|325270779|ref|ZP_08137370.1| two component system sensor histidine kinase [Prevotella
           multiformis DSM 16608]
 gi|324986895|gb|EGC18887.1| two component system sensor histidine kinase [Prevotella
           multiformis DSM 16608]
          Length = 1259

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 25  IAIKELIENS---LDAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
             ++ L+ N+   +D  + R+   +  G G +   + DNG G+ + E+     ++ 
Sbjct: 891 SVVRNLLSNAAKYVDDRTGRITVSVGTGQGCATVSVADNGPGVPAGELRRIFYKYY 946


>gi|308174712|ref|YP_003921417.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607576|emb|CBI43947.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope [YtsA] [Bacillus
           amyloliquefaciens DSM 7]
          Length = 351

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           Q+ A +++      S  I++L+ N++  +E+  +        G+    I D G G+  ++
Sbjct: 225 QLEAQDVLSDGKWLSFIIRQLLSNAVKYSEADDITVKSYEHNGRVHVDIEDRGIGIKPKD 284

Query: 68  IPMAVQRHCTS 78
           +P   ++  TS
Sbjct: 285 LPRIFEKGFTS 295


>gi|302528445|ref|ZP_07280787.1| heat shock protein [Streptomyces sp. AA4]
 gi|302437340|gb|EFL09156.1| heat shock protein [Streptomyces sp. AA4]
          Length = 578

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 27/138 (19%)

Query: 27  IKELIENSLD-------AESSR---VETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRH 75
           ++EL++N++D       A+++    +   +  G     +ITD G G++  ++  +     
Sbjct: 63  VRELLQNAVDAVTARQAADATAPAGIAIDVREGTL---RITDTGIGLSEAQVHELLATIG 119

Query: 76  CTSKISDDFSNIHTFGFR------GEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKI 128
            +SK  D+      +G R      G  L S   V+    +++R              +  
Sbjct: 120 RSSK-RDELG----YGRRDFLGQFGIGLLSAFLVADETRVVTRSASGAPAVSWTGRADGT 174

Query: 129 SSVRPVAMNP-GTIVEVR 145
            +V P   +  GT V + 
Sbjct: 175 YAVGPGERDAIGTTVTLT 192


>gi|296132175|ref|YP_003639422.1| signal transduction histidine kinase, LytS [Thermincola sp. JR]
 gi|296030753|gb|ADG81521.1| signal transduction histidine kinase, LytS [Thermincola potens JR]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 30  LIENSLD------AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           L+EN++         S  V   +   G+     I D+G G+  +++   +
Sbjct: 331 LVENAVKHGITPKVGSGAVSISVKKAGEELHITIKDDGVGIPEDKLDKVL 380


>gi|283457731|ref|YP_003362318.1| signal transduction histidine kinase [Rothia mucilaginosa DY-18]
 gi|283133733|dbj|BAI64498.1| signal transduction histidine kinase [Rothia mucilaginosa DY-18]
          Length = 584

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 20  IERPSIAIKELIENSLDAESSR-VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           IER    ++ L+ N+++   SR ++  +     +    + D+G G++ +E      R   
Sbjct: 436 IER---VLRNLLYNAIEHGESRPIDVYVGANATNLGVAVRDHGIGLSEDEAVQVFNRFW- 491

Query: 78  SKISDDFSNIHTFGFRGEALPSIGA 102
                D S   T G  G  L SI A
Sbjct: 492 ---RADTSRKRTLGGTGLGL-SIAA 512


>gi|256829865|ref|YP_003158593.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579041|gb|ACU90177.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 534

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 20  IERPSIAIKELIENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQR 74
           +ER    I  L +N++    D     +   +   GG+    + D G G+   +     ++
Sbjct: 422 VERIEQVIVNLTDNAIKYSPDGG--VISFTLQNEGGEIRILVRDQGPGIPPGDRQAIFKK 479

Query: 75  HCT 77
             T
Sbjct: 480 FHT 482


>gi|237806780|ref|YP_002891220.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187]
 gi|237499041|gb|ACQ91634.1| DNA gyrase, B subunit [Tolumonas auensis DSM 9187]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 74/246 (30%), Gaps = 23/246 (9%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   + +   I   G     + DNG G+      EE   A +      H
Sbjct: 43  EVMDNSIDETLAGHCTDIVARIHEDG--SVSVRDNGRGIPVDMHKEEGRSAAEVIMTILH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
              K  D+   + + G  G  +  + A+S   L++     N   Q    GE  + +  + 
Sbjct: 101 AGGKFDDNSYKV-SGGLHGVGVSVVNALSDKLLLTIQRNGNIYQQTYFLGEPDAPLAIIG 159

Query: 136 MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRYK 195
              GT  E+R  +      L+          ++    R ++     VS      +  R  
Sbjct: 160 TCEGTGTEIR-FW----PSLSIFSDVTFRYEILARRFRELSFLNSGVSIRLIDERDGRED 214

Query: 196 MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFIN 255
                  G     +  +       +                     +N       Y F N
Sbjct: 215 --HFHYEGGIRAFVEYLNQNKTPIHQKAFYFDLAREDGISVEVAMQWNDAYQENVYCFTN 272

Query: 256 GRTVQD 261
               +D
Sbjct: 273 NIPQRD 278


>gi|15606321|ref|NP_213700.1| gyrase B [Aquifex aeolicus VF5]
 gi|4033398|sp|O67137|GYRB_AQUAE RecName: Full=DNA gyrase subunit B
 gi|2983522|gb|AAC07098.1| gyrase B [Aquifex aeolicus VF5]
          Length = 792

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A  +  +   I     +   + D+G G+  +
Sbjct: 48 EILDNAVDEAVAGYARNISVTIHRD--NSVTVEDDGRGIPVD 87


>gi|85715373|ref|ZP_01046355.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697794|gb|EAQ35669.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 494

 Score = 41.2 bits (95), Expect = 0.49,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 23/94 (24%)

Query: 30  LIENSL------------DAE---S-SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAV 72
           L+EN++            DA    + S +       G      +TD+G G+   +   AV
Sbjct: 367 LVENAIKYGQPSRAAQPLDANEAAADSTILIEARHRGDRVILAVTDHGCGIPEADRKHAV 426

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSHL 106
           +R              T    G  L    AV+ L
Sbjct: 427 ERFV------RLEASRTLAGSGLGLSLASAVATL 454


>gi|296272791|ref|YP_003655422.1| Heat shock protein Hsp90 [Arcobacter nitrofigilis DSM 7299]
 gi|296096965|gb|ADG92915.1| Heat shock protein Hsp90 [Arcobacter nitrofigilis DSM 7299]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 42/155 (27%)

Query: 27  IKELIENSLDA--------------ES-------SRVETVIAGGGKSFFQITDNGFGMTS 65
           I+EL+ N+ DA              ++         +        KS   I DNG GM  
Sbjct: 29  IRELVSNASDAIDKLNYLKLTDDKIKAALPEDWSGEINVSFDEADKSL-TIVDNGIGMNE 87

Query: 66  EEIPMAVQRHCTS-------------KISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSR 111
           E++  ++     S             K   +       GF      S+  V S++ +++R
Sbjct: 88  EDLIASIGTIAKSGTKSFIEAMTGDAKKDSNLIGQFGVGF-----YSVFMVASNVDVITR 142

Query: 112 PPQNNTGAQIAISGEKISSVRPVAMNP-GTIVEVR 145
                T  + + +G     + P      GT++ ++
Sbjct: 143 KAGEETAFKWSSNGSGEFDLGPCTKESVGTVIYIK 177


>gi|294634008|ref|ZP_06712564.1| heat shock protein HtpG [Streptomyces sp. e14]
 gi|292830004|gb|EFF88357.1| heat shock protein HtpG [Streptomyces sp. e14]
          Length = 639

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 43/184 (23%)

Query: 27  IKELIENS----------------LDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N+                LDA++S +   I          + DNG GM+ +E+ 
Sbjct: 37  LRELVSNASDALDKLRLAALRDDTLDADTSDLHIEIEADPEARTLTVRDNGIGMSHDEVT 96

Query: 70  MAVQRHCTSKISDDFSNIH---------------TFGFRGEALPSIGAVSH-LTLMSRPP 113
             +     S  +     +                  GF      S   V+  +TL++R  
Sbjct: 97  QLIGTIANSGTAAFLKELREAQEGAGGDGLIGQFGVGF-----YSAFMVADEVTLVTRRA 151

Query: 114 QNNTGAQIAISGEKISSVRPVA-MNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVI 172
               G +    GE   ++  V     GT V         PA       +      I +++
Sbjct: 152 GETEGTRWNSRGEGTYTLETVPEAPQGTAVT----LHLKPADSENQLHDYTSAWKIKEIV 207

Query: 173 RRMA 176
           +R +
Sbjct: 208 KRYS 211


>gi|229124238|ref|ZP_04253430.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
 gi|228659540|gb|EEL15188.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYTDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|229135617|ref|ZP_04264396.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
 gi|228647844|gb|EEL03900.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  V+ ++        QI D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITVKVIVED--VIIVQIIDEGCGIPKDKIPKLNEAFYTTK 365


>gi|261366162|ref|ZP_05979045.1| periplasmic sensor signal transduction histidine kinase
           [Subdoligranulum variabile DSM 15176]
 gi|282571974|gb|EFB77509.1| periplasmic sensor signal transduction histidine kinase
           [Subdoligranulum variabile DSM 15176]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              G++   + DNG G+ +EE+    +   
Sbjct: 388 EEDGRALLTVEDNGCGIPAEELDRLTEPFY 417


>gi|222081338|ref|YP_002540701.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221726017|gb|ACM29106.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 640

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 9   KIINQIAAGEIIE----RPSIAIKELIENSLDA--ESSRVETVIA---GGGKSFFQITDN 59
           ++  +I +G  ++    +    I  L+ N++DA          ++    G      + DN
Sbjct: 506 EVSQEIGSGLKVQGSAAQLEQVILNLLSNAIDAVRGRKEPCIHVSGAAEGACCVIAVDDN 565

Query: 60  GFGMTSEEIPMAVQRHCTSK 79
           G G+ ++      +   T+K
Sbjct: 566 GPGIAADTGTQLFEPFYTTK 585


>gi|167463189|ref|ZP_02328278.1| DNA topoisomerase IV subunit B [Paenibacillus larvae subsp.
          larvae BRL-230010]
 gi|322381894|ref|ZP_08055848.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321154282|gb|EFX46604.1| DNA topoisomerase IV subunit B-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 657

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A+  S+++  I   G     + DNG G+ 
Sbjct: 54 EIVDNAVDEHLAKHCSKIDVTIHKEG--SITVYDNGRGIP 91


>gi|148556802|ref|YP_001264384.1| integral membrane sensor hybrid histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148501992|gb|ABQ70246.1| integral membrane sensor hybrid histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 23/72 (31%)

Query: 31  IENSL--------DA--ESSRVETVIAG-------------GGKSFFQITDNGFGMTSEE 67
           +EN++        DA   + R++  +A              G      + D G GM+ + 
Sbjct: 398 LENAILNLAVNARDAMEGAGRLDISVADVAVAAGDSADVKPGDYVRISVADTGCGMSPQV 457

Query: 68  IPMAVQRHCTSK 79
           +  A +   T+K
Sbjct: 458 LARAFEPFFTTK 469


>gi|116621909|ref|YP_824065.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225071|gb|ABJ83780.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 573

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 18/77 (23%)

Query: 21  ERPSIAIKELIENSLDA--ESSRVETV----------------IAGGGKSFFQITDNGFG 62
           +R   AI  L+ N+ DA   + R+                   +  G  +   ++D G G
Sbjct: 314 DRVEQAIVNLVVNARDAMPGAGRITVETANVYLDESYARSHVGVQPGEFAMIAVSDTGTG 373

Query: 63  MTSEEIPMAVQRHCTSK 79
           M  E +    +   T+K
Sbjct: 374 MDPEVMRRIFEPFFTTK 390


>gi|19909557|dbj|BAB86974.1| DNA gyrase subunit B [Synechococcus elongatus PCC 6301]
          Length = 545

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 31 IENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          ++N++D   A   + ++  +   G    Q+TDNG G+ ++
Sbjct: 2  VDNAVDKALAGYCNTIDVRLLKDG--SCQVTDNGRGIPTD 39


>gi|254230596|ref|ZP_04923958.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25]
 gi|151936883|gb|EDN55779.1| DNA topoisomerase IV, B subunit [Vibrio sp. Ex25]
          Length = 626

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGDK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            T +       K           + +++
Sbjct: 200 ITLT--DKVNGKDYKWYYEDGLKDYLAE 225


>gi|308177404|ref|YP_003916810.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
 gi|307744867|emb|CBT75839.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
          Length = 478

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 29  ELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           EL+EN+   A +S++   +A   K+   QI D+G GM+  E+  A +R 
Sbjct: 371 ELLENAFKYAPASKIVLSVASTPKAIEIQIQDHGAGMSEAELARAGERF 419


>gi|303246810|ref|ZP_07333087.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ]
 gi|302491827|gb|EFL51707.1| DNA gyrase, B subunit [Desulfovibrio fructosovorans JJ]
          Length = 810

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    R+   I     +   ++DNG G+  +
Sbjct: 52 EVVDNSIDESMAGFCDRIVVTIHLD--NSVTVSDNGRGIPVD 91


>gi|301307839|ref|ZP_07213795.1| putative sensor histidine kinase/response regulator [Bacteroides
           sp. 20_3]
 gi|300834182|gb|EFK64796.1| putative sensor histidine kinase/response regulator [Bacteroides
           sp. 20_3]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 38  ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            S R+E     G + F Q+ D G G+    +P    R  T
Sbjct: 517 GSVRIELT-EEGDRVFIQVIDTGSGIRPANLPHLFDRFYT 555


>gi|288916706|ref|ZP_06411081.1| DNA gyrase, B subunit [Frankia sp. EUN1f]
 gi|288351961|gb|EFC86163.1| DNA gyrase, B subunit [Frankia sp. EUN1f]
          Length = 692

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++N++D   A     +   + A GG    ++TDNG G+   E P
Sbjct: 37 VYEVVDNAVDEALAGYCDTITVTLLADGG---VRVTDNGRGIPVGEHP 81


>gi|262371170|ref|ZP_06064491.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313900|gb|EEY94946.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 67/247 (27%), Gaps = 26/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I         ++DNG G+      EE   A +      H
Sbjct: 57  EVVDNAIDEALAGHCDEILVTIHED--ESVSVSDNGRGIPTDIHPEEGVSAAEVILTILH 114

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L     +     Q             V
Sbjct: 115 AGGKFDDNSYKV-SGGLHGVGVSVVNALSRKLELT--IHRAGHIHQQEYKHGDPVYPLTV 171

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
             N  T       +                 +++   +R ++     V           +
Sbjct: 172 VGNTDTTGTTVRFW----PSAETFSQTIFNVDILARRLRELSFLNAGVRIVLR--DERIH 225

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
             +     G   E +  +       N +       E  +     +   N         F 
Sbjct: 226 AEHVFDYEGGLSEFVKYINQGKTHLNDIFHFTVQAENGIGVEVALQW-NDTYQENVRCFT 284

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 285 NNIPQKD 291


>gi|257168278|gb|ACV40273.1| DNA gyrase subunit B [Yersinia rohdei]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 13  EVVDNAIDEALAGHCKEIVVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 69

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 70  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVV 128

Query: 134 VAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
              +  GT V         P+   F  + + +  ++   +R ++     VS         
Sbjct: 129 GETDQTGTTVRF------WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLR--DKR 180

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             K +     G     +  +       +       + +  +     +   N G     Y 
Sbjct: 181 NDKEDHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 239

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 240 FTNNIPQRD 248


>gi|257094835|ref|YP_003168476.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047359|gb|ACV36547.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 704

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 10/52 (19%)

Query: 20  IERPSIAIKELIENSLDA----ESSRVETVIAGGGKS-FFQITDNGFGMTSE 66
           +ER    I  L++N+LDA       RV   +A  G +   ++ D G GM+ E
Sbjct: 587 VER---VIGHLVQNALDATDPDG--RVWVRLARQGTNALVEVGDTGHGMSPE 633


>gi|238750286|ref|ZP_04611788.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380]
 gi|238711519|gb|EEQ03735.1| DNA gyrase subunit B [Yersinia rohdei ATCC 43380]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 42  EVVDNAIDEALAGHCKEIVVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 98

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 99  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVV 157

Query: 134 VAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
              +  GT V         P+   F  + + +  ++   +R ++     VS         
Sbjct: 158 GETDQTGTTVRF------WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLR--DKR 209

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             K +     G     +  +       +       + +  +     +   N G     Y 
Sbjct: 210 NDKEDHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 268

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 269 FTNNIPQRD 277


>gi|228935979|ref|ZP_04098789.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823747|gb|EEM69569.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|225866653|ref|YP_002752031.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790643|gb|ACO30860.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|224418813|ref|ZP_03656819.1| DNA gyrase subunit B [Helicobacter canadensis MIT 98-5491]
 gi|253826663|ref|ZP_04869548.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491]
 gi|313142332|ref|ZP_07804525.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491]
 gi|253510069|gb|EES88728.1| DNA gyrase, B subunit [Helicobacter canadensis MIT 98-5491]
 gi|313131363|gb|EFR48980.1| DNA gyrase subunit b [Helicobacter canadensis MIT 98-5491]
          Length = 772

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 80/277 (28%), Gaps = 37/277 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIPMA----VQRH 75
           E+++NS+D   A   + +   +   G +     DNG G+      +E IP A       H
Sbjct: 42  EVVDNSIDEAMAGYCNEISITLTQQGSAII--KDNGRGIPVDIHPTENIPAATVVLTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAIS--GEKISSVRP 133
              K   D   + + G  G  +  + A+S    M+         Q       +   ++  
Sbjct: 100 AGGKFDQDSYKV-SGGLHGVGISVVNALSKSLQMTIHKNGKIYRQNFAQGIPQDELNIIG 158

Query: 134 VAMNPGTIVEV--RDLFFTIP--ARLNFLKSEQVETNLITDVIRRMAIAYPKVS------ 183
              + GTI+E    D  F I    R    K  +    L   V           +      
Sbjct: 159 ECKDNGTIIEFIPDDSIFEITEFQREILSKRFKELAYLNKQVTIHFKDERDGFNEIYHFE 218

Query: 184 -----FTFSTIKSNRYK--MNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGY 236
                F     K       +NF+ T  +   +I+    E F    +        I    +
Sbjct: 219 GGLNQFVNDLNKKPLISTIINFEGTENDVEIQIALAYNEGFEEKVLSFVNNIRTIDGGTH 278

Query: 237 TG--IPTFNRGNANQFYVFINGRTVQDKFILSTIRTA 271
                    R   N      N R    K     IR  
Sbjct: 279 ESGFRMGLTRVITNYIEANANAREKDSKITGEDIREG 315


>gi|183597858|ref|ZP_02959351.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827]
 gi|188022618|gb|EDU60658.1| hypothetical protein PROSTU_01192 [Providencia stuartii ATCC 25827]
          Length = 631

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 27/196 (13%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE---EIP----- 69
           RP+   +E+I+NS+D   A  +  +E ++        ++ D+G GM  +   E+      
Sbjct: 32  RPNHLAQEVIDNSVDEALAGHAGHIEVILYPD--QSLEVIDDGRGMPVDIHPEMKVSAVE 89

Query: 70  -MAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAISG 125
            +  Q H   K S+      + G  G  +  + A+S  + +  R          +     
Sbjct: 90  LILGQLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRIEVTVRRDGQIYQIAFENGDKV 148

Query: 126 EKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
           E++  +      N GT V             ++  + +   + +   ++  A+  P V  
Sbjct: 149 EELHVIGTCAKRNTGTSVHFW-------PDESYFDNPRFSVSRLAHNLKAKAVLCPGVKI 201

Query: 185 TFSTIKSNRYKMNFQS 200
           TF    +N  +    +
Sbjct: 202 TFKDQLNNTEQSWCYT 217


>gi|197122987|ref|YP_002134938.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172836|gb|ACG73809.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 30  LIENSLDA----ESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA            ++ G   G+   ++TD+G G+    +P       T+K
Sbjct: 557 LLLNAIDASGPGG----RVEVSTGAADGRVSVRVTDHGAGIDPAHLPRIFDPFFTTK 609


>gi|268567508|ref|XP_002647798.1| Hypothetical protein CBG23571 [Caenorhabditis briggsae]
          Length = 857

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            AI EL +N+ DA S+     +          + D+G GM+ +++   +    T K
Sbjct: 126 SAIAELTDNASDARSNNFYIDVVDTEWAEELHVMDDGIGMSRQDMLNVILFGKTQK 181


>gi|114046382|ref|YP_736932.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella sp. MR-7]
 gi|113887824|gb|ABI41875.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Shewanella sp. MR-7]
          Length = 537

 Score = 41.2 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 21  ERPSIAIKELIENSLDA-------ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAV 72
           ER    +  LI+N+++A          RV   I     +    + D+G G++  E     
Sbjct: 421 ERIVSIMGNLIDNAIEAVHRSNNHNPRRVVVTIDETTSNLIFDVEDSGDGISKTEYSTIF 480

Query: 73  QRHCTSK 79
               +SK
Sbjct: 481 DPDYSSK 487


>gi|308061830|gb|ADO03718.1| DNA gyrase subunit B [Helicobacter pylori Cuz20]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|304314761|ref|YP_003849908.1| sensory transduction histidine kinase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588220|gb|ADL58595.1| predicted sensory transduction histidine kinase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 749

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 26  AIKELIENSLD-AESSRVETVIAG-GGKSFFQITDNGFGM-TSEEIPMAVQ 73
            + EL+ NSL  + +  +   + G  G     ++D+G G+ + + +  A  
Sbjct: 659 IVNELVSNSLKHSGAENITVALKGVDGMFELVVSDDGVGVESPDALEKAGS 709


>gi|301056179|ref|YP_003794390.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300378348|gb|ADK07252.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|300721093|ref|YP_003710361.1| DNA gyrase subunit B [Xenorhabdus nematophila ATCC 19061]
 gi|297627578|emb|CBJ88097.1| DNA gyrase, subunit B (type II topoisomerase) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 80/247 (32%), Gaps = 25/247 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A    ++   I     +   + D+G G+      EE   A +      H
Sbjct: 42  EVVDNAIDEALAGHCDKIVVTIHAD--NSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L  R        Q    G   S +  V
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELTIR-RDGKVHEQTYHHGVPQSPLNIV 157

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
                T   VR      P+   F  + + E +++   +R ++     VS      ++N  
Sbjct: 158 GDTEQTGTTVRF----WPSMDTFKINTEFEYDILAKRLRELSFLNSGVSIRLVDKRTNAE 213

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVFI 254
            +                       N    + + + I   G      +N G     Y F 
Sbjct: 214 DLFHYKGGIKAFVEFLSRNKNPIHPNVFYFSTEKDGI---GVEISMQWNDGFQENIYCFT 270

Query: 255 NGRTVQD 261
           N    +D
Sbjct: 271 NNIPQRD 277


>gi|262039519|ref|ZP_06012821.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
 gi|261746500|gb|EEY34037.1| DNA gyrase, B subunit [Leptotrichia goodfellowii F0264]
          Length = 660

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          E+++NS+D   A     +   I     +  +++DNG G+           H T K     
Sbjct: 41 EIVDNSVDEALAGVCDNIIVKILKD--NVIEVSDNGRGIP-------FATHETGK--STL 89

Query: 85 SNIHT 89
            + T
Sbjct: 90 EVVMT 94


>gi|228929722|ref|ZP_04092739.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829901|gb|EEM75521.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|228941961|ref|ZP_04104504.1| hypothetical protein bthur0008_45950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974892|ref|ZP_04135453.1| hypothetical protein bthur0003_46420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981484|ref|ZP_04141781.1| hypothetical protein bthur0002_46450 [Bacillus thuringiensis Bt407]
 gi|228778163|gb|EEM26433.1| hypothetical protein bthur0002_46450 [Bacillus thuringiensis Bt407]
 gi|228784745|gb|EEM32763.1| hypothetical protein bthur0003_46420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817630|gb|EEM63712.1| hypothetical protein bthur0008_45950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942564|gb|AEA18460.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 44  TVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
             +   GK +    + DNG G+  E +    +   T+K
Sbjct: 323 VRLENKGKEYVMISVIDNGHGIKQENLIRVTEAFYTTK 360


>gi|229163665|ref|ZP_04291613.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
 gi|228619802|gb|EEK76680.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|229186930|ref|ZP_04314085.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
 gi|228596667|gb|EEK54332.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K    + DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVTVMDNGSGIESDTLPYIFERFY 429


>gi|229194198|ref|ZP_04321054.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
 gi|228589289|gb|EEK47252.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|188995458|ref|YP_001929710.1| DNA topoisomerase IV subunit B [Porphyromonas gingivalis ATCC
           33277]
 gi|188595138|dbj|BAG34113.1| DNA topoisomerase IV B subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 24/218 (11%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A    ++  I  G      + D G G+   ++  A  +  T  KI
Sbjct: 50  LKEVLDNSVDEFVMGAG-KSIDITIENG---TVTVRDYGRGIPLGKLVDATCKMNTGGKI 105

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQI-AISGEKISSVRPVAMNP 138
                   + G  G  + ++ A+S    +           +       + +   P     
Sbjct: 106 DSKAFK-KSVGLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSGEPS 164

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS----TIKSNRY 194
           GT V             +  ++ + +   +  +I+        +SF ++      +    
Sbjct: 165 GTEVRFT-------PDDSLFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNGKKFLSRKGLE 217

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            +  ++  G+    I  +   D         +  +E  
Sbjct: 218 DLLAENMTGDALYPIIHLSDTDIEIVVTHTQQYGDEFY 255


>gi|34540199|ref|NP_904678.1| DNA topoisomerase IV subunit B [Porphyromonas gingivalis W83]
 gi|34396511|gb|AAQ65577.1| DNA topoisomerase IV, B subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 24/218 (11%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE+++NS+D     A    ++  I  G      + D G G+   ++  A  +  T  KI
Sbjct: 50  LKEVLDNSVDEFVMGAG-KSIDITIENG---TVTVRDYGRGIPLGKLVDATCKMNTGGKI 105

Query: 81  SDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQI-AISGEKISSVRPVAMNP 138
                   + G  G  + ++ A+S    +           +       + +   P     
Sbjct: 106 DSKAFK-KSVGLNGVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSGEPS 164

Query: 139 GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFS----TIKSNRY 194
           GT V             +  ++ + +   +  +I+        +SF ++      +    
Sbjct: 165 GTEVRFT-------PDDSLFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNGKKFLSRKGLE 217

Query: 195 KMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEIT 232
            +  ++  G+    I  +   D         +  +E  
Sbjct: 218 DLLAENMTGDALYPIIHLSDTDIEIVVTHTQQYGDEFY 255


>gi|332673706|gb|AEE70523.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter
          pylori 83]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|331270701|ref|YP_004397193.1| DNA gyrase subunit B [Clostridium botulinum BKT015925]
 gi|329127251|gb|AEB77196.1| DNA gyrase, B subunit [Clostridium botulinum BKT015925]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I     +   + D+G GM 
Sbjct: 41 VYEIVDNSIDEALAGFCQNIKVYIHKN--NSVTVKDDGRGMP 80


>gi|308063700|gb|ADO05587.1| DNA gyrase subunit B [Helicobacter pylori Sat464]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|260768594|ref|ZP_05877528.1| sensor kinase CitA [Vibrio furnissii CIP 102972]
 gi|260616624|gb|EEX41809.1| sensor kinase CitA [Vibrio furnissii CIP 102972]
 gi|315180303|gb|ADT87217.1| sensor kinase citA, hypothetical [Vibrio furnissii NCTC 11218]
          Length = 540

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 25/91 (27%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAES--------------SRVETVIAGGG 50
            L      +I A +++         LI+N+ DA +                ++  ++  G
Sbjct: 414 VLPP----RIKAEDVVTILGN----LIDNAFDA-ALSVIRSEQLIPQDRRIIDVSVSDYG 464

Query: 51  KSFF-QITDNGFGMTSE-EIPMAVQRHCTSK 79
                ++ D G G+  + +    + +  +SK
Sbjct: 465 HDIILEVEDQGCGLPHDVDPNTLLHKGISSK 495


>gi|302547842|ref|ZP_07300184.1| heat shock protein HtpG [Streptomyces hygroscopicus ATCC 53653]
 gi|302465460|gb|EFL28553.1| heat shock protein HtpG [Streptomyces himastatinicus ATCC 53653]
          Length = 650

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 41/154 (26%)

Query: 27  IKELIENSLDA--------------ESSR----VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI NS DA              E+      +   +    ++   + DNG GM+ +++
Sbjct: 33  LRELISNSSDALDKLRLETLRDGDLEADTSDLHIALEVDKEQRTL-TVRDNGIGMSHDDV 91

Query: 69  PMAVQRHC---TSKI------------SDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRP 112
              +       T+K             S D       GF      S   V+  +TL++R 
Sbjct: 92  VQLIGTIANSGTAKFLKELKESQDAAASQDLIGQFGVGF-----YSSFMVADEVTLLTRR 146

Query: 113 PQNNTGAQIAISGEKISSVRPV-AMNPGTIVEVR 145
                G +   SGE   ++  V     GT V +R
Sbjct: 147 AGEGQGTRWVSSGEGTYTIEQVEDAPQGTAVTLR 180


>gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
 gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
          Length = 646

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           RVE ++  GG      ++D+G G+T  ++P      
Sbjct: 490 RVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPF 525


>gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
 gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
          Length = 646

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           RVE ++  GG      ++D+G G+T  ++P      
Sbjct: 490 RVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPF 525


>gi|313125955|ref|YP_004036225.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
 gi|312292320|gb|ADQ66780.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
          Length = 350

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 19  IIERPSIAIKELIEN-----SLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           +  R S  I EL EN     S D+   R++     G      +TD G G+   +   AV 
Sbjct: 235 VSSRLSAVIDELCENGVKHTSCDSPEVRIDASRVDGNWVKICVTDEGPGIP--DHERAVL 292

Query: 74  RHCTSKISDDFSNIHTFGF 92
           RH       D  +    GF
Sbjct: 293 RHG---EETDLVHGSGLGF 308


>gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 646

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           RVE ++  GG      ++D+G G+T  ++P      
Sbjct: 490 RVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPF 525


>gi|189183732|ref|YP_001937517.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda]
 gi|189180503|dbj|BAG40283.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Ikeda]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS D   A   +++E  +   G     + DNG G+  +
Sbjct: 53 EVLDNSTDESLAGGCNKIEVTLNKNG--SVTVRDNGRGIPVD 92


>gi|206969941|ref|ZP_03230895.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206735629|gb|EDZ52797.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|167746378|ref|ZP_02418505.1| hypothetical protein ANACAC_01087 [Anaerostipes caccae DSM 14662]
 gi|317470785|ref|ZP_07930168.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|167654371|gb|EDR98500.1| hypothetical protein ANACAC_01087 [Anaerostipes caccae DSM 14662]
 gi|316901723|gb|EFV23654.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 365

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 15/63 (23%)

Query: 30  LIENSL------DAESSRVETVIA----GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++      D    ++   +       G    ++ D G G++  ++P   +   TS 
Sbjct: 253 LLDNAVKHSEPSD----QITITVEAPERESGI-RIEVADRGEGISDADLPNIFETFYTSS 307

Query: 80  ISD 82
             D
Sbjct: 308 TRD 310


>gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 648

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           RVE ++  GG      ++D+G G+T  ++P      
Sbjct: 492 RVEVMVRRGGAYLDIVVSDDGIGITEADLPRLGDPF 527


>gi|70704892|gb|AAZ06864.1| DNA topoisomerase IV subunit B [Acholeplasma hippikon]
          Length = 549

 Score = 41.2 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A     +   I     +  +++DNG GM 
Sbjct: 13 EIVDNAMDEVLAGFGDEISVTIKQD--NSIEVSDNGRGMP 50


>gi|325299434|ref|YP_004259351.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
          protein [Bacteroides salanitronis DSM 18170]
 gi|324318987|gb|ADY36878.1| DNA topoisomerase type IIA subunit B region 2 domain protein
          [Bacteroides salanitronis DSM 18170]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 8/42 (19%)

Query: 28 KELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMT 64
          KE+I+NS+D     A   R++  +  G      + D G G+ 
Sbjct: 54 KEVIDNSIDEFKMGAG-KRIDIQLEEG--LRVSVRDYGRGIP 92


>gi|320538769|ref|ZP_08038447.1| putative sensory histidine kinase in two-component regulatory
           system with DcuR, regulator of anaerobic fumarate
           respiration [Serratia symbiotica str. Tucson]
 gi|320031158|gb|EFW13159.1| putative sensory histidine kinase in two-component regulatory
           system with DcuR, regulator of anaerobic fumarate
           respiration [Serratia symbiotica str. Tucson]
          Length = 533

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 17/88 (19%)

Query: 25  IAIKELIENSLDA----ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  LIEN+LDA    E   +              ++D+G G+         ++  ++K
Sbjct: 430 SVLGNLIENALDAINGVEGHEINLSFHHYDNHLHCTVSDDGSGIDPAIAARIFEQGFSTK 489

Query: 80  ISDDFSNIHTFGFRGEALPSIGAVSHLT 107
            ++          RG  L  I    HL 
Sbjct: 490 GTE----------RGIGLALIS--GHLE 505


>gi|317132811|ref|YP_004092125.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470790|gb|ADU27394.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 30  LIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L+   A  + V         +    + DNG G+T EEIP   +R  
Sbjct: 310 LIKNALEHTPAGGT-VMIRAEETPLTVSVHVKDNGEGITPEEIPHIFERFY 359


>gi|288961675|ref|YP_003451985.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288913955|dbj|BAI75441.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 720

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 18/73 (24%)

Query: 25  IAIKELIENSLDA--ESSRVETVIAGG---------GKS-------FFQITDNGFGMTSE 66
            A+  L+ N+ DA      +                G +          ++DNG GM  +
Sbjct: 432 SALLNLVINARDAMPGGGTLRIRTENARFEEPRAAHGMTVPAGDYVLLSVSDNGCGMPPD 491

Query: 67  EIPMAVQRHCTSK 79
            +  A +   T+K
Sbjct: 492 ILDRAFEPFFTTK 504


>gi|262275766|ref|ZP_06053575.1| two-component hybrid sensor and regulator [Grimontia hollisae CIP
           101886]
 gi|262219574|gb|EEY70890.1| two-component hybrid sensor and regulator [Grimontia hollisae CIP
           101886]
          Length = 413

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 23  PSIAIKELIENSLDAESS-----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
               +  L+ N+ DA        ++         K++  ITDNG G+ + +I        
Sbjct: 305 LVQVVVNLLNNAFDA-CKHHKYPKITVESGIDAPKAWLSITDNGKGINAADIGKIFDPFF 363

Query: 77  TSK 79
           T+K
Sbjct: 364 TTK 366


>gi|257168326|gb|ACV40299.1| DNA gyrase subunit B [Yersinia intermedia]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     +   I     +   + D+G G+      EE   A +      H
Sbjct: 13  EVVDNAIDEALAGHCKEIIVTIHSD--NSVSVQDDGRGIPTGMHEEEGVSAAEVIMTVLH 70

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L+ R           +   +       
Sbjct: 71  AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVVG 129

Query: 135 AMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
             +  GT V         P+   F  + + +  ++   +R ++     VS          
Sbjct: 130 ETDQTGTTVRF------WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLK--DKRN 181

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            + +     G     +  +       +       + +  +     +   N G     Y F
Sbjct: 182 DREDHFHYEGGIRAFVEYLNKNKTPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYCF 240

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 241 TNNIPQRD 248


>gi|229081928|ref|ZP_04214420.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
 gi|228701516|gb|EEL54010.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKIIVKVMDNGSGIESDTLPYIFERFY 429


>gi|254491239|ref|ZP_05104420.1| DNA gyrase, B subunit [Methylophaga thiooxidans DMS010]
 gi|224463752|gb|EEF80020.1| DNA gyrase, B subunit [Methylophaga thiooxydans DMS010]
          Length = 777

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   S ++  I         + DNG G+  +
Sbjct: 18 EVLDNAIDEALAGHCSEIQVRIHPD--DSVSVIDNGRGIPVD 57


>gi|307592324|ref|YP_003899915.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306985969|gb|ADN17849.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N++DA     +  + T +        +I DNG G+  E      +   T+K
Sbjct: 367 LIDNAIDAINTKGTIWIRTAVEKN-YVIVEIADNGSGIPPEIQSRIFEPFFTTK 419


>gi|254421678|ref|ZP_05035396.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189167|gb|EDX84131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 429

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 17/91 (18%)

Query: 30  LIENSLD---AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           LI N++    A   ++   ++ G +     ITD G G+ ++++     R        D +
Sbjct: 314 LIANAIQYTPAG--KITIDLSAGTQQATITITDTGIGIPTQDLSHIFDRFY----RVDPA 367

Query: 86  NIHTFGFRGEALPSIGAV------SHLTLMS 110
              + G  G  L  I  +        LTL S
Sbjct: 368 RSRSAGGSGLGLA-IAKIIVENHHGQLTLTS 397


>gi|147921340|ref|YP_684846.1| signal transduction histidine kinase [uncultured methanogenic
           archaeon RC-I]
 gi|110620242|emb|CAJ35520.1| predicted signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 502

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 17/62 (27%)

Query: 26  AIKELIENS---------LDAESSRVET-VIAGGGKSF--FQITDNGFGMTSEEIPMAVQ 73
            I  L++N+         +D     ++   +   G ++    + DNG G+  E+  +  Q
Sbjct: 393 VISNLVDNAVKHVHDPVMID-----IDVARVERNGVNYYRISVVDNGDGIPDEKKELIFQ 447

Query: 74  RH 75
           R 
Sbjct: 448 RF 449


>gi|134292078|ref|YP_001115814.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135235|gb|ABO56349.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 603

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 26  AIKELIENSL---DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
            ++ L+ N++   DA   R+       G     Q+ D G G+ ++++ +  Q + 
Sbjct: 349 IVRNLVSNAVRYTDAG--RIVVGCRRRGARVAIQVWDTGRGIAADQLELVFQEYY 401


>gi|317181823|dbj|BAJ59607.1| DNA gyrase subunit B [Helicobacter pylori F57]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|308184282|ref|YP_003928415.1| DNA gyrase subunit B [Helicobacter pylori SJM180]
 gi|308060202|gb|ADO02098.1| DNA gyrase subunit B [Helicobacter pylori SJM180]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|308176826|ref|YP_003916232.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
 gi|307744289|emb|CBT75261.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
          Length = 536

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 17/107 (15%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             +  I  L++N++DA ++     ++  I          + DNG G+  + +     +  
Sbjct: 432 DLTTVIGNLVDNAMDAAAAAANPEIQVRIEETSELVRITVRDNGEGIAEDAMDEIFTQGF 491

Query: 77  TSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAI 123
           ++K S     +   G RG  L     +S L    R       A    
Sbjct: 492 STKDS----AVS--GGRGFGLA----ISRLVC--RRRGGELAAANVQ 526


>gi|301165375|emb|CBW24946.1| DNA gyrase subunit B [Bacteriovorax marinus SJ]
          Length = 817

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 23  PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE--------EIPM 70
               + E+++N++D   A   + ++ +I     +   + DNG G+ ++           +
Sbjct: 45  LHHCVYEIVDNAVDEALAGYCTEIKIIIHVD--NSVTVVDNGRGIPTDMHPTEGCSAAEL 102

Query: 71  AVQR-HCTSKISDD 83
              + H   K ++D
Sbjct: 103 VYTKLHAGGKFNED 116


>gi|311112351|ref|YP_003983573.1| sensor histidine kinase [Rothia dentocariosa ATCC 17931]
 gi|310943845|gb|ADP40139.1| sensor histidine kinase [Rothia dentocariosa ATCC 17931]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 29  ELIENSLD-AESSRVETVIAGGGKSFF--QITDNGF-GMTSEEIPMAVQRHCTSKISDDF 84
           EL+ N++  A +  +   I   GKS    ++ D+G  G+  + +         SK S   
Sbjct: 326 ELVTNAVKHANAQNITVSITQ-GKSLIMLEVQDDGTGGIPQDALG--------SKASGGL 376

Query: 85  SNIH 88
             + 
Sbjct: 377 EGVR 380


>gi|292572202|gb|ADE30117.1| DNA gyrase subunit B [Rickettsia prowazekii Rp22]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     V+  +   G     ++DNG G+  E
Sbjct: 50 EVVDNSIDEALAGYCDLVQVTLNKNG--SVTVSDNGRGIPVE 89


>gi|261839663|gb|ACX99428.1| DNA gyrase subunit B [Helicobacter pylori 52]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|239928501|ref|ZP_04685454.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC
          14672]
 gi|291436826|ref|ZP_06576216.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC
          14672]
 gi|291339721|gb|EFE66677.1| DNA topoisomerase IV subunit B [Streptomyces ghanaensis ATCC
          14672]
          Length = 707

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D A      R+E V+   G    ++ DNG G+  +
Sbjct: 59 EIIDNSVDEALGGYCDRIEVVLHDDG--SVEVRDNGRGIPVD 98


>gi|261856588|ref|YP_003263871.1| heat shock protein Hsp90 [Halothiobacillus neapolitanus c2]
 gi|261837057|gb|ACX96824.1| Heat shock protein Hsp90-like protein [Halothiobacillus
           neapolitanus c2]
          Length = 626

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 52/158 (32%), Gaps = 46/158 (29%)

Query: 27  IKELIENSLDA------------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA                  ES R+        K+   I DNG GM  +E+
Sbjct: 32  LRELVSNASDACDKLRFEAVSDDALYEGDESLRIRVSFDEAAKT-VTIEDNGIGMNRDEV 90

Query: 69  ---PMAVQRHCT-----------SKISDDFSNIHTF--GFRGEALPSIGAVSH-LTLMSR 111
                 + R  T           SK   D S I  F  GF      S   V+  ++L +R
Sbjct: 91  IENIGTIARSGTKAFIQKLGQDKSK---DLSQIGQFGVGF-----YSAFIVADEVSLTTR 142

Query: 112 PPQN--NTGAQIAISGEKISSVRPVAMNPGTIVEVRDL 147
                   G +    GE   ++  V         V  L
Sbjct: 143 RAGMGPEHGVKWTSRGEGEYTLETVDKPERGTTIVLHL 180


>gi|217032914|ref|ZP_03438390.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128]
 gi|298736181|ref|YP_003728707.1| DNA gyrase, B subunit [Helicobacter pylori B8]
 gi|216945363|gb|EEC24033.1| hypothetical protein HPB128_10g6 [Helicobacter pylori B128]
 gi|298355371|emb|CBI66243.1| DNA gyrase, B subunit [Helicobacter pylori B8]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|182414419|ref|YP_001819485.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
 gi|177841633|gb|ACB75885.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1254

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 21   ERPSIAIKELIENSLDA-----ES-SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
             R    +  LI N+ DA     ++  ++   I     +    + DNG G+ +E       
Sbjct: 1136 HRLMQVLLNLINNAKDACRDTKQAERQITIRITEDDARIRVAVIDNGVGIATENRTRIFS 1195

Query: 74   RHCTSK 79
               T+K
Sbjct: 1196 HGFTTK 1201


>gi|171912397|ref|ZP_02927867.1| two-component hybrid histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 956

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 32  ENSLDAESS---------RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +N++DA +S         ++    +  G  +   I DNG G+ +  +        T+K
Sbjct: 833 KNAIDALASSMTPDSAPPQIWISASSEGTATDILIRDNGPGIPATNLSRIFDPFFTTK 890


>gi|15893728|ref|NP_347077.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023292|gb|AAK78417.1|AE007558_7 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507851|gb|ADZ19487.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 18  EIIERPSIAIKELIENSL-----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMA 71
           E IER    +  L+ N++     DA    +   I   G +    + DNG G+  ++  M 
Sbjct: 498 EKIER---IVLNLLSNAVKFTGKDAN---IRVAIHDVGSNIQISVEDNGMGIPEDKKKMI 551

Query: 72  VQRH 75
            +R 
Sbjct: 552 FERF 555


>gi|15604433|ref|NP_220951.1| DNA gyrase subunit B [Rickettsia prowazekii str. Madrid E]
 gi|6647531|sp|Q9ZCX2|GYRB_RICPR RecName: Full=DNA gyrase subunit B
 gi|3861127|emb|CAA15027.1| DNA GYRASE SUBUNIT B (gyrB2) [Rickettsia prowazekii]
          Length = 807

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     V+  +   G     ++DNG G+  E
Sbjct: 50 EVVDNSIDEALAGYCDLVQVTLNKNG--SVTVSDNGRGIPVE 89


>gi|186683668|ref|YP_001866864.1| heat shock protein 90 [Nostoc punctiforme PCC 73102]
 gi|186466120|gb|ACC81921.1| ATP-binding region, ATPase domain protein [Nostoc punctiforme PCC
          73102]
          Length = 662

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 18/61 (29%)

Query: 27 IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          ++EL+ N++DA                     +E  I    K    I+DNG GMT++E+ 
Sbjct: 30 LRELVSNAVDAIQKLKMVSRAGDYAGDIGEPEIEIAIDKD-KKTLSISDNGIGMTADEVK 88

Query: 70 M 70
           
Sbjct: 89 K 89


>gi|332527922|ref|ZP_08403956.1| DNA topoisomerase IV subunit B [Rubrivivax benzoatilyticus JA2]
 gi|332112496|gb|EGJ12289.1| DNA topoisomerase IV subunit B [Rubrivivax benzoatilyticus JA2]
          Length = 657

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
          + P   ++E+I+N+ D   A    R+   +   G     + D+G G+      EE    +
Sbjct: 33 DNPLHVVQEVIDNAADEALAGFGKRIAVTLHADG--SVAVEDDGRGIPFGLHPEEQVPVL 90

Query: 69 PMAVQR-HC 76
           +   R H 
Sbjct: 91 EIVYTRLHA 99


>gi|317470787|ref|ZP_07930170.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901725|gb|EFV23656.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Anaerostipes sp. 3_2_56FAA]
          Length = 902

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 30  LIENSL--DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFS 85
           L++N++    + S ++       GK   ++ D+G G++ E          T SK   D  
Sbjct: 797 LVDNAIKYTGKGSHIDISAEKKNGKVLIEVADDGEGISDEAKTRLFDMFYTGSKTVAD-- 854

Query: 86  NIHTFG 91
           +  + G
Sbjct: 855 SRRSMG 860


>gi|307154462|ref|YP_003889846.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306984690|gb|ADN16571.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 668

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 66/527 (12%), Positives = 142/527 (26%), Gaps = 91/527 (17%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI NS+DA S                   +   +    K+   I+DNG GMT +E+ 
Sbjct: 32  LRELISNSVDAISKLKMASLAGEVKGDLPEPEIVISVNKDEKTL-SISDNGIGMTVDEVK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVS-HLTL--MSRPPQNN 116
             + +   S          K ++DF      GF      S   V+  + +  +S      
Sbjct: 91  KYINQVAFSSAEDFISKYQKSANDFIGHFGLGF-----YSAFMVAKKVQIDTLSYKEGAE 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMA 176
                     +    +      GT + +          L   ++E +E + I  +++  +
Sbjct: 146 AVHWSCDGSPEFELSQSNRQEVGTTITLT---------LLDDETEYLEPSRIKQLVKTYS 196

Query: 177 IAYP-KVSFTFSTIKSNRYKMNFQSTN---GNFPERISQVIGEDFINNAVELNEKSNEIT 232
              P  + F    I   R        N    ++ E    +                    
Sbjct: 197 DFIPVAIKFEGEQINKQRALWKESPQNLKDEDYLEFYRYLYPFQEDPLLWVHLNTDYPFL 256

Query: 233 LQGYTGIPTF---NRGNANQFYVFINGRTVQDKFILSTIRTAYAETIPLGR--------- 280
           L G    P        +  Q  +F N   V D            E +   R         
Sbjct: 257 LNGILYFPKLRPDVDVSKGQIKLFCNQVFVSD-----HCEEIIPEFLMPLRGVIDSPDIP 311

Query: 281 ----------YPVVVLLLEIDPRQVD---VNVHPAKSYIRFRNPTIIRNFIIQSIQKAIN 327
                     +  V  + +   +++     N++   +    R    +  FI     K   
Sbjct: 312 LNVSRSSLTNHRTVRRIADFIAKKIGDRLKNLYNENAQEYIRCWEDVGTFIKYGSLKEEK 371

Query: 328 KKGISTSSVLSKKMISSFHQDNAPKTHLPKYATSLTNTQEKLFLQENRLSTNDLLPSDDP 387
            K      ++ +        +N   +  PK             +   + +   L   +  
Sbjct: 372 FKKQVEDILIYRTTYKPSESENKTDSETPKVEVQSAQEDLWQDVTPEKAADTPLAAIEKQ 431

Query: 388 TYSEDNDPVEESEATHYQLGIACAQIHQNYIISQ----------TTDGLVIVDQHAAHER 437
            Y+     ++ ++  H      C          +            D  +  +       
Sbjct: 432 GYTTLQSYLDRNKERHENRVFYCTDASTQATYVELYKNQGVEVLYFDSFIDTNYFIPFLE 491

Query: 438 LIFEKMRQDFNSTKITSQTLLTPEIIDL--LEGECALIMEHDEDLHR 482
             +++++     +++ S  L   +  ++           +  E   +
Sbjct: 492 REYDQVKFSRVDSELDSTLLQQDKASEIVDPATNKTRSEQIKEIFEK 538


>gi|296271548|ref|YP_003654179.1| DNA gyrase subunit B [Arcobacter nitrofigilis DSM 7299]
 gi|296095723|gb|ADG91673.1| DNA gyrase, B subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 772

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  +      + ++ D+G G+ 
Sbjct: 39 VYEVVDNSIDEAMAGYCKNIKITMTKD--HWIRVEDDGRGIP 78


>gi|325679286|ref|ZP_08158871.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108883|gb|EGC03114.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 407

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
              I DNG G++ EE+P   +R   SK
Sbjct: 332 RIFIEDNGCGISEEELPNVFRRFW-SK 357


>gi|262168762|ref|ZP_06036457.1| sensor kinase CitA [Vibrio cholerae RC27]
 gi|262022880|gb|EEY41586.1| sensor kinase CitA [Vibrio cholerae RC27]
          Length = 138

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 30 LIENSLDAESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
          L++N+   E++         +  ++   G     ++ DNG G++++       +  +SK
Sbjct: 24 LLDNAF--EATLKNPHSNKTISLLLTDNGAELVIEVADNGIGISADIAQTLFLKGVSSK 80


>gi|288932085|ref|YP_003436145.1| PAS/PAC sensor signal transduction histidine kinase [Ferroglobus
           placidus DSM 10642]
 gi|288894333|gb|ADC65870.1| PAS/PAC sensor signal transduction histidine kinase [Ferroglobus
           placidus DSM 10642]
          Length = 615

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 14  IAAGEIIERPS-----IAIKELIENSLD-AESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           I A E++   +       +  L+EN+     + +V   +      +   + D+G G+  E
Sbjct: 494 INAEEVVV-LADNTIFNVLTNLVENAFKHGGAKKVRISVRKEDEFAVITVEDDGKGIPKE 552


>gi|258542825|ref|YP_003188258.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633903|dbj|BAH99878.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636962|dbj|BAI02931.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640015|dbj|BAI05977.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643071|dbj|BAI09026.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646126|dbj|BAI12074.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649179|dbj|BAI15120.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652166|dbj|BAI18100.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655223|dbj|BAI21150.1| two component sensor histidine kinase NtrY [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 754

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 17/67 (25%)

Query: 30  LIENSLDA--------ESS--------RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAV 72
           L++N+ DA        E++         V   I  G +    ++ DNG G+ S++     
Sbjct: 641 LLQNAADAIAMTARQGEATDQAPATKGEVSVRIIEGAEDIAIEVADNGVGLPSDDRNRLT 700

Query: 73  QRHCTSK 79
           + + T K
Sbjct: 701 EPYVTHK 707


>gi|229080387|ref|ZP_04212911.1| hypothetical protein bcere0023_30330 [Bacillus cereus Rock4-2]
 gi|228702949|gb|EEL55411.1| hypothetical protein bcere0023_30330 [Bacillus cereus Rock4-2]
          Length = 281

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 30  LIENSL---DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+ N+L   D + + ++  I    G     I DNG G+   ++P    ++
Sbjct: 183 LLNNALIHTDVK-TVIQVRIKQTSGYIIVTIEDNGDGINKNDLPHIFDQY 231


>gi|225181274|ref|ZP_03734719.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Dethiobacter alkaliphilus AHT 1]
 gi|225168054|gb|EEG76860.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Dethiobacter alkaliphilus AHT 1]
          Length = 537

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 30  LIENSLDAES------SRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           L+EN++DA S       ++E ++         ++ D G G+  E +    +   ++K  +
Sbjct: 431 LLENAMDAVSGLPQEKRKIEILVRNLPEHFLIRVKDLGVGIAPEHLSEIFKPGFSTKAKE 490


>gi|229816429|ref|ZP_04446730.1| hypothetical protein COLINT_03482 [Collinsella intestinalis DSM
           13280]
 gi|229807971|gb|EEP43772.1| hypothetical protein COLINT_03482 [Collinsella intestinalis DSM
           13280]
          Length = 674

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 38/130 (29%)

Query: 27  IKELIENSLDA----------ESS--------RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA          +SS         +        ++   ++DNG GMT+E++
Sbjct: 27  LRELISNASDAVDKLNFKSLSDSSIQLDDEDLAIRVSFDRDARTL-TVSDNGIGMTAEDL 85

Query: 69  P--MAVQRHCTS---KIS------DDFSNIHTF--GFRGEALPSIGAV-SHLTLMSRPPQ 114
              +    H  S   K +       D   I  F  GF      S   V S + ++SR   
Sbjct: 86  ENNLGTIAHSGSQEFKQANAEHQGSDVDIIGQFGVGF-----YSAFMVASRVRVVSRAFG 140

Query: 115 NNTGAQIAIS 124
            +        
Sbjct: 141 EDVAHVWESD 150


>gi|167746380|ref|ZP_02418507.1| hypothetical protein ANACAC_01089 [Anaerostipes caccae DSM 14662]
 gi|167654373|gb|EDR98502.1| hypothetical protein ANACAC_01089 [Anaerostipes caccae DSM 14662]
          Length = 902

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 30  LIENSL--DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKISDDFS 85
           L++N++    + S ++       GK   ++ D+G G++ E          T SK   D  
Sbjct: 797 LVDNAIKYTGKGSHIDISAEKKNGKVLIEVADDGEGISDEAKTRLFDMFYTGSKTVAD-- 854

Query: 86  NIHTFG 91
           +  + G
Sbjct: 855 SRRSMG 860


>gi|220915778|ref|YP_002491082.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953632|gb|ACL64016.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 525

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 23/85 (27%)

Query: 15  AAGEIIER-----PSI--------AIKELIENSLDAES-----SRVETVI--AGGGKSFF 54
           AAG ++ R     P+          +  L+ N+  A++      R+        GG  F 
Sbjct: 396 AAGLVLSREISPAPAACDPDQIRQVVWNLLRNA--AQALGGRGGRIAVACGGEDGGAWF- 452

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSK 79
            + D+G G+   E         T+K
Sbjct: 453 AVEDDGPGIPPAERERIFLPFHTTK 477


>gi|220918579|ref|YP_002493883.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956433|gb|ACL66817.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 581

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA---ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA            + G    F+++D+G G+   ++    + + T+K
Sbjct: 478 LVRNALDAMPSGGRLRLVARSDGDAVAFEVSDSGAGIAPADLERVFEPYFTTK 530


>gi|197121076|ref|YP_002133027.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196170925|gb|ACG71898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 525

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 23/85 (27%)

Query: 15  AAGEIIER-----PSI--------AIKELIENSLDAES-----SRVETVI--AGGGKSFF 54
           AAG ++ R     P+          +  L+ N+  A++      R+        GG  F 
Sbjct: 396 AAGLVLSREIGPAPAACDPDQIRQVVWNLLRNA--AQALGGRGGRIAVACGGEDGGAWF- 452

Query: 55  QITDNGFGMTSEEIPMAVQRHCTSK 79
            + D+G G+   E         T+K
Sbjct: 453 AVEDDGPGIPPAERERIFLPFHTTK 477


>gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory
           protein [Herminiimonas arsenicoxydans]
 gi|133739702|emb|CAL62753.1| Putative two-component sensor kinase [Herminiimonas arsenicoxydans]
          Length = 512

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 11/58 (18%)

Query: 29  ELIENSLD-------AE--SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           EL+ N +D       A   ++ V        G +F ++ DNG G+   E     +R  
Sbjct: 393 ELLNNLIDNALSYTPAGGNAT-VRVRTDQQAGLAFLEVEDNGPGIAPHERSHIFERFY 449


>gi|119960794|ref|YP_947430.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119947653|gb|ABM06564.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 548

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 20  IERPSIAIKELIENSLDAES-----SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQ 73
           I+     +  L++N++DA +      +VE  +  G  +  F + D G G+  + I   +Q
Sbjct: 429 IQDLVTILGNLLDNAIDAAAAGDFPRKVELDVEAGPAAVEFTVRDTGSGINPDSIDDVLQ 488


>gi|119384055|ref|YP_915111.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119373822|gb|ABL69415.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++    D    RV   +   G      I D+G GM+ E+   A+ R  
Sbjct: 344 LVENAVKWAKD----RVRITVLLQGDQLRILIEDDGPGMSDEDHARALTRGA 391


>gi|119384326|ref|YP_915382.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119374093|gb|ABL69686.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++    D    RV   +   G      I D+G GM+ E+   A+ R  
Sbjct: 344 LVENAVKWAKD----RVRITVLLQGDQLRILIEDDGPGMSDEDHARALTRGA 391


>gi|87307321|ref|ZP_01089466.1| PAS sensor signal transduction histidine kinase [Blastopirellula
           marina DSM 3645]
 gi|87290061|gb|EAQ81950.1| PAS sensor signal transduction histidine kinase [Blastopirellula
           marina DSM 3645]
          Length = 501

 Score = 41.2 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ NS  A+ +    R+   +    G +   ++DNG G+   +     +   
Sbjct: 251 RLVQVVSNLLSNS--AKYTPRRGRICIDLRTENGFAILAVSDNGVGIAEGDRARIFEAFA 308


>gi|332188890|ref|ZP_08390595.1| response regulator [Sphingomonas sp. S17]
 gi|332011072|gb|EGI53172.1| response regulator [Sphingomonas sp. S17]
          Length = 341

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 9/52 (17%)

Query: 26  AIKELIENSL-----DAESSRVETVI--AGGGKSFFQITDNGFGMTSEEIPM 70
            + EL+ N+      D  +  V   +           + D+G GM ++E P 
Sbjct: 255 IVTELVTNACKYAYPD-GAGEVRIRVAREDAQC-LLVVEDDGCGMAADEAPK 304


>gi|320531090|ref|ZP_08032119.1| DNA gyrase, B subunit [Selenomonas artemidis F0399]
 gi|320136672|gb|EFW28625.1| DNA gyrase, B subunit [Selenomonas artemidis F0399]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     V   I     +   + DNG G+  +
Sbjct: 91  VYEVVDNSIDEALAGYCDTVAVTIHRD--NSITVVDNGRGIPVD 132


>gi|317177660|dbj|BAJ55449.1| DNA gyrase subunit B [Helicobacter pylori F16]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|319780074|ref|YP_004139550.1| DNA gyrase, subunit beta [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
 gi|317165962|gb|ADV09500.1| DNA gyrase, B subunit [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     + DNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADLVTVTLNPDG--SVTVIDNGRGIPTD 91


>gi|316964525|gb|EFV49590.1| putative Hsp90 protein [Trichinella spiralis]
          Length = 590

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 24/84 (28%)

Query: 4   RKLSEKIINQIAAG-EIIERPSIAIKELIENSLDA----------ESSRVE------TVI 46
           R L + + N + +  E+       ++ELI N+ DA           ++ ++        I
Sbjct: 54  RMLLDVVANSLYSHKEVF------VRELISNASDALEKLRALQATNATDIQTVDELKIEI 107

Query: 47  AGGGKSF-FQITDNGFGMTSEEIP 69
                   F I DNG GMT EE+ 
Sbjct: 108 FTNKLEKTFTIRDNGIGMTKEELK 131


>gi|313894727|ref|ZP_07828288.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976636|gb|EFR42090.1| DNA gyrase, B subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 684

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     V   I     +   + DNG G+  +
Sbjct: 91  VYEVVDNSIDEALAGYCDTVAVTIHRD--NSITVVDNGRGIPVD 132


>gi|296156477|ref|ZP_06839315.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. Ch1-1]
 gi|295893076|gb|EFG72856.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. Ch1-1]
          Length = 439

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 30  LIENSLD-AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+L    ++ +    +  G++   + D G G+ ++ +    +   
Sbjct: 341 LVDNALKFGGAAEITVSASPDGQTLIAVLDRGPGIPAQSLEAVFEPFY 388


>gi|260463130|ref|ZP_05811332.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075]
 gi|259030980|gb|EEW32254.1| DNA gyrase, B subunit [Mesorhizobium opportunistum WSM2075]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     + DNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADLVTVTLNPDG--SVTVIDNGRGIPTD 91


>gi|253576486|ref|ZP_04853815.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251844123|gb|EES72142.1| DNA topoisomerase IV, B subunit [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A+  ++++  +   G     + DNG G+ 
Sbjct: 59 EIVDNAVDEHLAKYCTKIDITLNKDG--SVTVLDNGRGIP 96


>gi|229062464|ref|ZP_04199778.1| Sensor histidine kinase [Bacillus cereus AH603]
 gi|228716826|gb|EEL68516.1| Sensor histidine kinase [Bacillus cereus AH603]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  V+ ++        QI D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITVKVIVED--VIIVQIIDEGCGIPKDKIPKLNEAFYTTK 365


>gi|227547951|ref|ZP_03978000.1| two-component system, sensory transduction histidine kinase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079962|gb|EEI17925.1| two-component system, sensory transduction histidine kinase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 460

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 21  ERPSIAIKELIENSL-----DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQR 74
           +R    +  L+ N+      DA    V   +     K F  + DNG GM  E+     +R
Sbjct: 351 DRLHQVMLNLVSNAFKHGGPDA---EVTITLRENLDKVFIDVADNGVGMRQEDADHIFER 407

Query: 75  HC---TS 78
                TS
Sbjct: 408 FYRADTS 414


>gi|240145281|ref|ZP_04743882.1| sensor protein ResE [Roseburia intestinalis L1-82]
 gi|253578069|ref|ZP_04855341.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850387|gb|EES78345.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|257202636|gb|EEV00921.1| sensor protein ResE [Roseburia intestinalis L1-82]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 31  IENSLDAESS--RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+LD   +  ++              ITDNG G++ E+I    +R   SK
Sbjct: 312 IKNALDHTDTGGKISISWEQTPAMIRIFITDNGHGISQEDIHHIFKRFYRSK 363


>gi|225023722|ref|ZP_03712914.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC
          23834]
 gi|224943604|gb|EEG24813.1| hypothetical protein EIKCOROL_00586 [Eikenella corrodens ATCC
          23834]
          Length = 799

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A     +   I         I DNG G+ 
Sbjct: 46 EVLDNAIDEALAGHCDSITVSINAD--ESITIEDNGRGIP 83


>gi|254504091|ref|ZP_05116242.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11]
 gi|222440162|gb|EEE46841.1| DNA topoisomerase IV, B subunit [Labrenzia alexandrii DFL-11]
          Length = 691

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+NS+D   A  ++ ++  +   G  +  ITDNG G+  +
Sbjct: 88  EVIDNSMDEAVAGHATWIDVSLGADG--YLNITDNGRGIPVD 127


>gi|254439392|ref|ZP_05052886.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307]
 gi|198254838|gb|EDY79152.1| DNA gyrase, B subunit [Octadecabacter antarcticus 307]
          Length = 805

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 81/252 (32%), Gaps = 29/252 (11%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAV 72
           + E+++N +D   A  +  V   I   G     ++DNG G+           + E+ +  
Sbjct: 46  VYEVVDNGIDEALAGHADAVNVKIHDDG--SVSVSDNGRGIPVGIHEGEGVSAAEV-IMT 102

Query: 73  QRHCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIAISGEKISSV 131
           Q H   K   +   + + G  G  +  + A+S  L L          A+           
Sbjct: 103 QLHAGGKFDSNSYKV-SGGLHGVGVSVVNALSDYLELRIWRNGKEHYARFEGGFTVKHLE 161

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKS 191
                   T  EVR       A L+   + +     +   +R +A     V    +  + 
Sbjct: 162 VVADCGDRTGTEVR-----FLASLDTFSNREFYFETLEKRLRELAFLNSGVRIILTDERP 216

Query: 192 NRYKMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGNANQ 249
             + ++    +G   E +  +       +   + +  + +EI ++       +N      
Sbjct: 217 AEHLVSELYYDGGVKEFVKYLDRSKTSILPEPIYVIGERDEIVVEVAM---WWNDSYNEM 273

Query: 250 FYVFINGRTVQD 261
              F N    +D
Sbjct: 274 VLPFTNNIPQRD 285


>gi|193215409|ref|YP_001996608.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088886|gb|ACF14161.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 576

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 43  ETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
              I  G    K + +I+DNG G+  E++    +   T+K
Sbjct: 469 NIKIKTGVELNKVYIEISDNGVGIPEEKLSKIFEPFYTTK 508


>gi|163736973|ref|ZP_02144391.1| periplasmic sensor signal transduction histidine kinase
           [Phaeobacter gallaeciensis BS107]
 gi|161389577|gb|EDQ13928.1| periplasmic sensor signal transduction histidine kinase
           [Phaeobacter gallaeciensis BS107]
          Length = 656

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 3   IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA--ESSRVETVIAGGGKS-----FFQ 55
           I++ SE    +I  GE        +  LI N++ A   S ++   +    ++       +
Sbjct: 527 IKQFSETPAVRIDPGE----LQQVVINLILNAVQAMEGSGQLVLTLREMDRNDVSGACLE 582

Query: 56  ITDNGFGMTSEEIPMAVQRHCTSKISD 82
           + D G G+ ++++P       T+K+ +
Sbjct: 583 VADTGSGIAAKDLPSVFNPFYTTKLGE 609


>gi|160882759|ref|ZP_02063762.1| hypothetical protein BACOVA_00720 [Bacteroides ovatus ATCC 8483]
 gi|156111783|gb|EDO13528.1| hypothetical protein BACOVA_00720 [Bacteroides ovatus ATCC 8483]
          Length = 681

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 37/127 (29%)

Query: 27  IKELIENSLDA-----------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N++DA                     V   +   GK    I+D G G+T+EEI 
Sbjct: 29  LRELVSNAVDATQKLNTLASIGEFKGELGDLTVHVEL---GKDTITISDRGIGLTAEEIE 85

Query: 70  MAVQRHCTS-------KISDDFSNI---HTFGFRGEALPSIGAVS-HLTLMSRP-PQNNT 117
             + +   S       K  +D + I      GF      S   V+  + ++++    +  
Sbjct: 86  KYINQIAFSGANDFLEKYKNDANAIIGHFGLGF-----YSAFMVAKKVEIITKSYRDDAK 140

Query: 118 GAQIAIS 124
             +    
Sbjct: 141 AVKWTCD 147


>gi|153005217|ref|YP_001379542.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028790|gb|ABS26558.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 764

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 21  ERPSIAIKELIENSLDAESS----RVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
            R S  +  L+ N+  A+ +    RVE  +      G     + D G GM  E++    Q
Sbjct: 520 TRISQVVGNLLHNA--AKFTAAGGRVEVEVASREENG--LIAVRDTGAGMIPEDLERIFQ 575

Query: 74  RHC 76
              
Sbjct: 576 PFA 578


>gi|118479812|ref|YP_896963.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044095|ref|ZP_03111332.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|118419037|gb|ABK87456.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196025431|gb|EDX64101.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|86738729|ref|YP_479129.1| DNA gyrase subunit B [Frankia sp. CcI3]
 gi|86565591|gb|ABD09400.1| DNA gyrase subunit B [Frankia sp. CcI3]
          Length = 679

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 27  IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           + E+++N++D   A     +   + A GG    ++TDNG G+ 
Sbjct: 72  VYEVVDNAVDEALAGYCDTITVTLLADGG---VRVTDNGRGIP 111


>gi|89899378|ref|YP_521849.1| CheA signal transduction histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89344115|gb|ABD68318.1| CheA signal transduction histidine kinases [Rhodoferax
           ferrireducens T118]
          Length = 729

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 24/76 (31%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAE----SSRV--------ETVIA---GGG 50
           L + ++ +I        P      L+ NS D      + R+           ++    GG
Sbjct: 445 LDKGLVEKI------TDPLT---HLVRNSCDHGIEMPADRIRAGKSETGTITLSAAHQGG 495

Query: 51  KSFFQITDNGFGMTSE 66
               ++ D+G GM+ E
Sbjct: 496 SIVIEVRDDGHGMSRE 511


>gi|13474326|ref|NP_105894.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099]
 gi|14025078|dbj|BAB51680.1| DNA gyrase subunit B [Mesorhizobium loti MAFF303099]
          Length = 823

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     + DNG G+ ++
Sbjct: 50 VYEVVDNAIDEALAGHADLVTVTLNPDG--SVTVIDNGRGIPTD 91


>gi|326516348|dbj|BAJ92329.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 605

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 24/74 (32%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ ++      +           DNG GM  E       RHC  
Sbjct: 72  AISELLDNAVDEICNGATFIKVDKSTNVKDNSPMLVF-QDNGGGMDPE-----GVRHC-- 123

Query: 79  KISDDFSNIHTFGF 92
                     + GF
Sbjct: 124 ---------MSLGF 128


>gi|313680912|ref|YP_004058651.1| DNA gyrase subunit b [Oceanithermus profundus DSM 14977]
 gi|313153627|gb|ADR37478.1| DNA gyrase subunit B [Oceanithermus profundus DSM 14977]
          Length = 637

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  ++  +   G +   + DNG G+  +
Sbjct: 40 EILDNSVDEALAGYADTIKVTLHKDGSAS--VEDNGRGIPVD 79


>gi|295110583|emb|CBL24536.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Ruminococcus obeum A2-162]
          Length = 475

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 25  IAIKELIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
            AI  L+EN++    D     V   I    K  +  + D+G G+  + +    +R  
Sbjct: 368 SAISNLVENAIKYNVDDG--WVRVSIDADHKDFYVTVADSGMGIPEDSLDRIFERFY 422


>gi|261838253|gb|ACX98019.1| DNA gyrase subunit B [Helicobacter pylori 51]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|302874362|ref|YP_003842995.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|307691039|ref|ZP_07633485.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|302577219|gb|ADL51231.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
          Length = 421

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 30  LIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L+EN+     D    ++       GK     + DNG G+  EE      R   S    D 
Sbjct: 320 LLENAFKYTRDDG--KIFVSFKDEGKYIRIIVKDNGIGIKEEEQERIFDRFFRS---SDV 374

Query: 85  SNIHTFGFRGEALPSIGAVSH-LTLMSR-PPQNNTGAQIAISGEKIS 129
              +  G  G  L  + ++S  L +  +   +   G +  +   K+ 
Sbjct: 375 RAKNISG-SGIGLSLLKSISKSLKITVKFTSKYGEGTEFKLLVPKVM 420


>gi|229169510|ref|ZP_04297214.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228613900|gb|EEK71021.1| Sensor histidine kinase [Bacillus cereus AH621]
          Length = 405

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  V+ ++        QI D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITVKVIVED--VIIVQIIDEGCGIPKDKIPKLNEAFYTTK 365


>gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 2783

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 16/85 (18%)

Query: 1    MKIRK-----LSEKIINQIAAGEIIERPSI-AIK---ELIENSLDAESSRVETVIAGGGK 51
            MK+R      L   I +Q    +II      A+K   E         S  V   +     
Sbjct: 2643 MKVRIDTSPSLPPVIADQKRVSQIIFNLFSNAVKYTYE-------GGSITVRAFVNRANM 2695

Query: 52   SFFQITDNGFGMTSEEIPMAVQRHC 76
               ++ D G GM+ E++    +   
Sbjct: 2696 MQIEVEDTGVGMSPEQLKKLFRPFY 2720


>gi|188527660|ref|YP_001910347.1| DNA gyrase subunit B [Helicobacter pylori Shi470]
 gi|188143900|gb|ACD48317.1| DNA gyrase subunit B [Helicobacter pylori Shi470]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|113473879|ref|YP_718142.1| hypothetical protein pCAR3_201 [Sphingomonas sp. KA1]
 gi|112821559|dbj|BAF03430.1| hypothetical protein [Sphingomonas sp. KA1]
          Length = 563

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 29 ELIENSLDAESSRVETVIAG-GGKSFFQITDNGFGM-TSEEIPMAVQ 73
          EL +N+  A ++ +              ++D+G G+    ++    Q
Sbjct: 42 ELFQNARRAGATCITVTAEHMADACLITVSDDGAGIADPVDLLSLGQ 88


>gi|89054416|ref|YP_509867.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1]
 gi|88863965|gb|ABD54842.1| DNA topoisomerase IV subunit B [Jannaschia sp. CCS1]
          Length = 653

 Score = 41.2 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A  ++R+E  +         I DNG GM  +
Sbjct: 49 VAEVLDNSMDEAVAGYATRIEVELHAD--HAVTIRDNGRGMPFD 90


>gi|328554641|gb|AEB25133.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope (YtsA) [Bacillus
           amyloliquefaciens TA208]
 gi|328913050|gb|AEB64646.1| two-component sensor histidine kinase controlling resistance to
           antibiotics affecting the envelope [Bacillus
           amyloliquefaciens LL3]
          Length = 334

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 13  QIAAGEIIER---PSIAIKELIENSLD-AESSRVETV-IAGGGKSFFQITDNGFGMTSEE 67
           Q+ A +++      S  I++L+ N++  +E+  +        G+    I D G G+  ++
Sbjct: 208 QLEAQDVLSDGKWLSFIIRQLLSNAVKYSEADDITVKSYEHNGRVHVDIEDRGIGIKPKD 267

Query: 68  IPMAVQRHCTS 78
           +P   ++  TS
Sbjct: 268 LPRIFEKGFTS 278


>gi|325846392|ref|ZP_08169361.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481576|gb|EGC84616.1| DNA gyrase, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I         + D+G G+  E
Sbjct: 40 VYEVVDNSVDEALAGRCDYIKISIDENNI--VTVEDDGSGIPIE 81


>gi|308182657|ref|YP_003926784.1| DNA gyrase subunit B [Helicobacter pylori PeCan4]
 gi|308064842|gb|ADO06734.1| DNA gyrase subunit B [Helicobacter pylori PeCan4]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|297379696|gb|ADI34583.1| DNA gyrase, B subunit [Helicobacter pylori v225d]
          Length = 775

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|317128931|ref|YP_004095213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
 gi|315473879|gb|ADU30482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
          Length = 1071

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 20   IERPSIAIKELIENSLDA--ESSRVET-VIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            IE+    +  LI+NS DA     ++   VI     + F + DNG GM+ E +    + +
Sbjct: 958  IEQIKRVLIHLIQNSFDALQNGGKILLQVIEDNTFTVFTVIDNGVGMSQERVQKLGEPY 1016


>gi|269967413|ref|ZP_06181473.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B]
 gi|269828001|gb|EEZ82275.1| DNA topoisomerase 4 subunit B [Vibrio alginolyticus 40B]
          Length = 626

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGEK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            T +       K           + +++
Sbjct: 200 ITLT--DKVNGKDYKWYYEDGLKDYLAE 225


>gi|262193330|ref|YP_003264539.1| DNA gyrase subunit beta [Haliangium ochraceum DSM 14365]
 gi|262076677|gb|ACY12646.1| DNA gyrase, B subunit [Haliangium ochraceum DSM 14365]
          Length = 821

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A    RV+  I     +   + DNG G+ 
Sbjct: 50 VHEVVDNAVDEALAGYCDRVDITIHSD--NSITVEDNGRGIP 89


>gi|261493164|ref|ZP_05989695.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
          str. BOVINE]
 gi|261311167|gb|EEY12339.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
          str. BOVINE]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  + +++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGFADKIDVILHAD--NSLEVVDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|261495914|ref|ZP_05992336.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261308435|gb|EEY09716.1| DNA topoisomerase 4 subunit B [Mannheimia haemolytica serotype A2
          str. OVINE]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  + +++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGFADKIDVILHAD--NSLEVVDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|257056046|ref|YP_003133878.1| heat shock protein 90 [Saccharomonospora viridis DSM 43017]
 gi|256585918|gb|ACU97051.1| molecular chaperone of HSP90 family [Saccharomonospora viridis DSM
           43017]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 42/134 (31%)

Query: 27  IKELIENSLDA------ESSR------------VETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA      E+ R            ++  +    ++   + DNG GM+ +E+
Sbjct: 38  LRELISNASDALDKLRLEAFRNKDLEVEIDDLHIDLEVDRAARTL-TVRDNGIGMSRDEV 96

Query: 69  PMAVQRHCTS-------KISD----------DFSNIHTFGFRGEALPSIGAVSH-LTLMS 110
              +     S       K+ +          D       GF      S   V+  +TL++
Sbjct: 97  VGLIGTIAKSGTAELIQKLREAKNTDGAASADLIGQFGVGF-----YSAFMVADTVTLVT 151

Query: 111 RPPQNNTGAQIAIS 124
           +        + +  
Sbjct: 152 KKAGQAEATRWSSD 165


>gi|256545954|ref|ZP_05473309.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398376|gb|EEU11998.1| DNA gyrase, B subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I         + D+G G+  E
Sbjct: 40 VYEVVDNSVDEALAGRCDYIKISIDENNI--VTVEDDGSGIPIE 81


>gi|257054877|ref|YP_003132709.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM
          43017]
 gi|256584749|gb|ACU95882.1| DNA topoisomerase IV subunit B [Saccharomonospora viridis DSM
          43017]
          Length = 701

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS D   A  ++++   +   G    ++ D+G G+ 
Sbjct: 61 EIVDNSTDEGVAGHATKIVVTLHADG--SVEVDDDGRGIP 98


>gi|212697384|ref|ZP_03305512.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212675576|gb|EEB35183.1| hypothetical protein ANHYDRO_01954 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A     ++  I         + D+G G+  E
Sbjct: 40 VYEVVDNSVDEALAGRCDYIKISIDENNI--VTVEDDGSGIPIE 81


>gi|170749987|ref|YP_001756247.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656509|gb|ACB25564.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 423

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 23  PSIAIKELIENSLDAESSRVETVIAG------GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  I+ LIEN++     R+   +A       G +    + D+G G+  E IP   +R  
Sbjct: 299 LARVIENLIENAVKYGGGRISVGLAREDDPRLGRRVVLSVADDGPGIPPEHIPRLTERFY 358


>gi|167617750|ref|ZP_02386381.1| C4-dicarboxylate transport sensor protein [Burkholderia
           thailandensis Bt4]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 561 RIDVTIDATAATLAIAVRDNGPGIAPESLARLFEPFFTTK 600


>gi|167579672|ref|ZP_02372546.1| C4-dicarboxylate transport sensor protein [Burkholderia
           thailandensis TXDOH]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 573 RIDVTIDATAATLAIAVRDNGPGIAPESLARLFEPFFTTK 612


>gi|254362507|ref|ZP_04978612.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica
          PHL213]
 gi|153094104|gb|EDN75008.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Mannheimia haemolytica
          PHL213]
          Length = 635

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 13/65 (20%)

Query: 21 ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RP+   +E+I+NS+D   +  + +++ ++     +  ++ DNG GM  +        H 
Sbjct: 31 TRPNHLGQEVIDNSVDEALSGFADKIDVILHAD--NSLEVVDNGRGMPVD-------IHS 81

Query: 77 TSKIS 81
          T KIS
Sbjct: 82 TEKIS 86


>gi|149916750|ref|ZP_01905252.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica
          SIR-1]
 gi|149822467|gb|EDM81856.1| type II DNA topoisomerase, B subunit [Plesiocystis pacifica
          SIR-1]
          Length = 644

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 21 ERPSIAIKELIENSLD----AESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E     + E+++NS+D      +S+++  +    +    I+D+G G+  +
Sbjct: 42 EGLHHIVWEILDNSVDEVINGHASQIKVTLEAD-RRGITISDDGRGIPVD 90


>gi|170726077|ref|YP_001760103.1| histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811424|gb|ACA86008.1| histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 608

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R    +  L+ N++ A    +  R+   I  G     +I D+G G+   ++    + + T
Sbjct: 487 RLQQVLVNLMSNAILAMERSKVKRITIRIEKGEMLCIKIQDSGPGVQDSQMEKIFEPYYT 546


>gi|115724654|ref|XP_001203463.1| PREDICTED: similar to sacsin, partial [Strongylocentrotus
           purpuratus]
 gi|115884001|ref|XP_796132.2| PREDICTED: similar to sacsin, partial [Strongylocentrotus
           purpuratus]
          Length = 2487

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 25  IAIKELIENSLDAESSRVETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
             +KEL++N+ DA ++++  V       GK        G GM + + P     +  S   
Sbjct: 556 TILKELLQNADDAGATQIHFVYDPRSHYGKKLL-----GDGMKALQGPALCVFNNKSFTD 610

Query: 82  DDFSNIHTFG 91
           +D   I   G
Sbjct: 611 EDIRGIQNLG 620


>gi|83721206|ref|YP_440958.1| C4-dicarboxylate transport sensor protein [Burkholderia
           thailandensis E264]
 gi|257140388|ref|ZP_05588650.1| C4-dicarboxylate transport sensor protein [Burkholderia
           thailandensis E264]
 gi|83655031|gb|ABC39094.1| C4-dicarboxylate transport sensor protein [Burkholderia
           thailandensis E264]
          Length = 677

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 584 RIDVTIDATAATLAIAVRDNGPGIAPESLARLFEPFFTTK 623


>gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing
           protein [Aromatoleum aromaticum EbN1]
 gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and
           histidine kinase domain of putative two-component sensor
           [Aromatoleum aromaticum EbN1]
          Length = 918

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 21  ERPSIAIKELIENSLDA-----ESSRVETVIA-GGGKSFFQITDNGFGMTSE 66
           +R    +  L+ N+  A      + R+   +    G+   +++DNG G+  E
Sbjct: 799 DRLVQVMLNLLSNA--AKFVPQGAGRIRVALKSEAGQVRVEVSDNGPGIPPE 848


>gi|323135684|ref|ZP_08070767.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322398775|gb|EFY01294.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 358

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 24  SIAIKELIEN-SLDAESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           +  ++E + N  L A + RV   +    G +   + D+G G    
Sbjct: 266 AAVLREALRNIELHAGARRVRVALAKDAGVTRLLVEDDGTGFDPS 310


>gi|290475136|ref|YP_003468022.1| hypothetical protein XBJ1_2123 [Xenorhabdus bovienii SS-2004]
 gi|289174455|emb|CBJ81249.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 23  PSIAIKELIENSLD-AESSRVETVIAGGGKSFFQI-TDNGFGMTSEEIP----MAVQR 74
            +  I+E + N    A++S +   I   GK    + +DNG G+  E+I     +A+ R
Sbjct: 322 LAQIIREALNNCYKHADASWISIRIYPIGKKIITVISDNGHGIHQEQIKAQFGLAIMR 379


>gi|257057887|ref|YP_003135719.1| signal transduction histidine kinase [Saccharomonospora viridis DSM
           43017]
 gi|256587759|gb|ACU98892.1| signal transduction histidine kinase [Saccharomonospora viridis DSM
           43017]
          Length = 383

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 20/88 (22%)

Query: 4   RKLSEKIINQIAA--GEI------IERPSIAIKELIENSLD------AESSRVETVIAGG 49
           + LS   + QIAA  GE+      +      ++E + N +D      A++     ++   
Sbjct: 257 QILSTSRV-QIAAPAGEVPMPSNAVTELVAVVREALSN-VDKHAGPSAKA---WVLLEDL 311

Query: 50  GKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           G+     + D+G G+    +  A+    
Sbjct: 312 GEEIVLTVRDDGPGIPPGRLEEALAEGH 339


>gi|297191607|ref|ZP_06909005.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197719347|gb|EDY63255.1| DNA topoisomerase IV subunit B [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 708

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A---ESSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D A       +E ++   G    ++ DNG G+  +
Sbjct: 58 EIIDNSVDEALGGHCDHIEVILHEDG--SVEVRDNGRGIPVD 97


>gi|254426117|ref|ZP_05039834.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196188540|gb|EDX83505.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 175

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC 76
             Q+ D+G G+   ++P   +R  
Sbjct: 102 LIQVKDDGTGIPEVDLPKIFERFY 125


>gi|254425535|ref|ZP_05039252.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196187958|gb|EDX82923.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 434

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHC 76
             Q+ D+G G+   ++P   +R  
Sbjct: 361 LIQVKDDGTGIPEVDLPKIFERFY 384


>gi|162449526|ref|YP_001611893.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160108|emb|CAN91413.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1693

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 22   RPSIAIKELIENSLDAESSR-VETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            R    +  L++N+L   + + +E  +    G +   + D G G+ +  +P    R 
Sbjct: 1572 RLEQVVSNLLDNALKFGAGKPIEVSVARKDGTAELVVQDQGIGIPAGRLPHVFDRF 1627


>gi|13476030|ref|NP_107600.1| two-component C4-dicarboxylate transport system, sensor protein
           [Mesorhizobium loti MAFF303099]
 gi|14026790|dbj|BAB53386.1| two-component C4-dicarboxylate transport system, sensor protein
           [Mesorhizobium loti MAFF303099]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESS----RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L++N+LDA       R+E  +     +    + DNG G+  E          
Sbjct: 497 RLEQILVNLLQNALDAMKDQPDPRIEIDLAQRDDRVLISVRDNGPGLGPEAAGNLFMPFQ 556

Query: 77  TSK 79
           T+K
Sbjct: 557 TTK 559


>gi|17548229|ref|NP_521569.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17430475|emb|CAD17159.1| probable c4-dicarboxylate transport sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 634

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 22  RPSIAIKELIENSLDA-------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           R    +  LI N++DA       E++ V              + D G G+  E +P   +
Sbjct: 519 RLEQVLVNLIRNAIDATAEAPRPEAAGVRVTAQADDALVRITVRDAGPGIAPEVLPHLFE 578

Query: 74  RHCTSK 79
              T+K
Sbjct: 579 PFFTTK 584


>gi|87302719|ref|ZP_01085530.1| heat shock protein 90 [Synechococcus sp. WH 5701]
 gi|87282602|gb|EAQ74560.1| heat shock protein 90 [Synechococcus sp. WH 5701]
          Length = 630

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 17/59 (28%)

Query: 27 IKELIENSLDAESSR----------------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
          ++EL+ N++DA S R                V   I    K+   I+DNG GM+++E+ 
Sbjct: 32 LRELVSNAVDAISKRRMAAMAGDCSEGPEGLVSIRIDREAKTL-TISDNGIGMSADEVK 89


>gi|119776667|ref|YP_929407.1| sensor histidine kinase [Shewanella amazonensis SB2B]
 gi|119769167|gb|ABM01738.1| sensor histidine kinase [Shewanella amazonensis SB2B]
          Length = 419

 Score = 41.2 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 9/49 (18%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           L++N++    D  +      I+  G+    I DNG G+  E      +R
Sbjct: 329 LVDNAIKYAGD-GA---AISISQNGRE-VVIADNGPGIPPESRERVFER 372


>gi|327193725|gb|EGE60604.1| two-component sensor histidine kinase protein regulating
           C4-dicarboxylate transport system [Rhizobium etli
           CNPAF512]
          Length = 619

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L++N+L+A     E+ RVE   +         + DNG G++ E         
Sbjct: 516 RLEQVLINLLQNALEAVAPKAEAGRVEVRTSADAETVTLTVADNGPGISPEIRKGLFTPF 575

Query: 76  CTSK---------ISDDFSNIHTFGFRGE 95
            TSK         IS D   +  +G R E
Sbjct: 576 NTSKEKGLGLGLVISKDI--VGDYGGRME 602


>gi|323448598|gb|EGB04495.1| hypothetical protein AURANDRAFT_67157 [Aureococcus
          anophagefferens]
          Length = 4616

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 25 IAIKELIENSLDAESSRVETVIA 47
            +KEL++N+ DA +  V   + 
Sbjct: 31 SIVKELVQNADDAGARTVAICVD 53


>gi|298369978|ref|ZP_06981294.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014
          str. F0314]
 gi|298281438|gb|EFI22927.1| DNA topoisomerase IV, B subunit [Neisseria sp. oral taxon 014
          str. F0314]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    ++ ++  I   G     + DNG G+ 
Sbjct: 32 DSPTHICQEVIDNAADEALGGFATEIDVRIHNDG--SLSVHDNGRGIP 77


>gi|295836522|ref|ZP_06823455.1| membrane protein [Streptomyces sp. SPB74]
 gi|295826076|gb|EDY46592.2| membrane protein [Streptomyces sp. SPB74]
          Length = 756

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 13/72 (18%)

Query: 2   KIRKLSEKIINQIAAGEIIERPSIAIKELIENSL-----DAESSRVETV--IAGGGKSFF 54
           +I  L       I AG   +  S  + EL+EN+      DA   +VE    +   G+   
Sbjct: 521 RIAALPPH--AHI-AGFSADDLSHLVAELLENATSFSPPDA---QVEVSAWLLENGEVML 574

Query: 55  QITDNGFGMTSE 66
            + D G GM++E
Sbjct: 575 SVQDEGIGMSAE 586


>gi|229048479|ref|ZP_04194042.1| hypothetical protein bcere0027_44420 [Bacillus cereus AH676]
 gi|228722844|gb|EEL74226.1| hypothetical protein bcere0027_44420 [Bacillus cereus AH676]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 31  IENSLDA-ESSRV-ETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+L+A     +    +   GK +    + DNG G+  E +P   +   T+K
Sbjct: 308 IKNALEAMGQGGILHLQLENKGKEYVMISVIDNGHGIKQENLPRVTEAFYTTK 360


>gi|193215357|ref|YP_001996556.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088834|gb|ACF14109.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 575

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 22/68 (32%)

Query: 30  LIENSLDAESSRVETVIAGGGKS------------------FFQITDNGFGMTSEEIPMA 71
           LI N+    +  +E   +  G S                    +  DNG G++ E +   
Sbjct: 455 LITNA----AQAIEVDSSENGVSERKVGKIIITTAIENDFVLIKFQDNGKGISPENLKRV 510

Query: 72  VQRHCTSK 79
            +   T+K
Sbjct: 511 FEPFFTTK 518


>gi|190892723|ref|YP_001979265.1| two-component sensor histidine kinase regulating C4-dicarboxylate
           transport system [Rhizobium etli CIAT 652]
 gi|190698002|gb|ACE92087.1| two-component sensor histidine kinase protein regulating
           C4-dicarboxylate transport system [Rhizobium etli CIAT
           652]
          Length = 619

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 17/89 (19%)

Query: 22  RPSIAIKELIENSLDA-----ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R    +  L++N+L+A     E+ RVE   +         + DNG G++ E         
Sbjct: 516 RLEQVLINLLQNALEAVAPKAEAGRVEVRTSADAETVTLTVADNGPGISPEIRKGLFTPF 575

Query: 76  CTSK---------ISDDFSNIHTFGFRGE 95
            TSK         IS D   +  +G R E
Sbjct: 576 NTSKEKGLGLGLVISKDI--VGDYGGRME 602


>gi|168182819|ref|ZP_02617483.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237794262|ref|YP_002861814.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674034|gb|EDT85995.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229261251|gb|ACQ52284.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 473

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 31  IENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           + NS D    ++   +    K    I DNG G+  EE+     R+ 
Sbjct: 385 VHNSED---VKINVTLKKQDKISIIIEDNGRGIKEEELNRIFDRYY 427


>gi|119714278|ref|YP_921243.1| DNA gyrase subunit B [Nocardioides sp. JS614]
 gi|119534939|gb|ABL79556.1| DNA gyrase subunit B [Nocardioides sp. JS614]
          Length = 711

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 8/41 (19%)

Query: 29  ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
           E+++N++D   A    R+   + A GG    ++ DNG G+ 
Sbjct: 68  EIVDNAVDEALAGYCDRIVLTLLADGG---IRVEDNGRGIP 105


>gi|11499110|ref|NP_070344.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
 gi|2649045|gb|AAB89730.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
          Length = 338

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 24  SIAIKELIENSLD-AESSRVETVIAGGGKSFFQI--TDNGFGMTSEEIPMAVQRHCT 77
               + LI N++    ++ V   +   G    ++   DNG G+  E      ++  T
Sbjct: 230 YSVFENLIGNAVKHGGATEVSVEVRDEG-DHCEVIFRDNGRGIPEEIREKVFEKGFT 285


>gi|121998316|ref|YP_001003103.1| multi-sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121589721|gb|ABM62301.1| multi-sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 688

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 21/107 (19%)

Query: 18  EII---ERPSIAIKELIENSLDA----ESSRVETVI---AGGGKSFFQITDNGFGMTSEE 67
           ++I   ER +  +  L+ N+ DA        +   +      G  +  I D G GM    
Sbjct: 567 QVIADQERLANVVAHLVRNAQDATPADG--WIRLRLSQREEWG--YIVIEDTGQGMDEAF 622

Query: 68  I-PMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAV-SHLTLMSRP 112
           +     +   T+K  +    I  +    EA   I ++   + + SRP
Sbjct: 623 LRERLFRPFQTTK-GNAGMGIGVY----EAREYIASLGGRIEVSSRP 664


>gi|323700457|ref|ZP_08112369.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323460389|gb|EGB16254.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 669

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 15/71 (21%)

Query: 22  RPSIAIKELIENSLDA----------ESSRVETVIAGGGKS---FFQITDNGFGMTSEEI 68
           R    I  L+ N+ DA             R+      G      F ++ D G G+  ++ 
Sbjct: 550 RLQQVIFNLVTNARDAIDDVSNEDADGDRRIRIRT--GNLDHRVFIEVEDTGCGIDEKDQ 607

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 608 QKIFEPFFTTK 618


>gi|308175053|ref|YP_003921758.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607917|emb|CBI44288.1| two-component sensor histidine kinase YvrG innvolved in cell wall
           processes [YvrH] [Bacillus amyloliquefaciens DSM 7]
 gi|328555022|gb|AEB25514.1| two-component sensor histidine kinase YvrG innvolved in cell wall
           processes (YvrH) [Bacillus amyloliquefaciens TA208]
 gi|328913377|gb|AEB64973.1| two-component sensor histidine kinase YvrG innvolved in cell wall
           processes [Bacillus amyloliquefaciens LL3]
          Length = 580

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 9/54 (16%)

Query: 31  IENSLDAES-------SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC 76
           +EN L A +       + +  V+    +    ++ DNG GM  E I     R+ 
Sbjct: 479 LENLL-ANAVKHNKKGTAIRVVLEESAEQLILKVKDNGRGMDEETIHQLFNRYY 531


>gi|293394324|ref|ZP_06638624.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM
          4582]
 gi|291423302|gb|EFE96531.1| DNA topoisomerase (ATP-hydrolyzing) ParE [Serratia odorifera DSM
          4582]
          Length = 606

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 15/74 (20%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IP 69
          RP+   +E+I+NS+D   A  + R++ ++        ++ D+G GM      EE    + 
Sbjct: 7  RPNHLGQEVIDNSVDEALAGHAKRIDVILHAD--QSLEVVDDGRGMPVDIHPEEGVPAVE 64

Query: 70 MAVQR-HCTSKISD 82
          + + R H   K S+
Sbjct: 65 LILCRLHAGGKFSN 78


>gi|317127237|ref|YP_004093519.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472185|gb|ADU28788.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 333

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 41  RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
            +    +     +   I DNG G+  E++P   +R    K + D
Sbjct: 248 NIHITFSENALFTEIIIRDNGVGIAKEDVPYIFKRFYKGKNASD 291


>gi|297570053|ref|YP_003691397.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925968|gb|ADH86778.1| DNA gyrase, B subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 801

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 24/89 (26%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSE--------- 66
           E     + E+++NS+D   A    R++  I   G  S     DNG G+  E         
Sbjct: 39  EGLHHLVYEVVDNSIDEALAGYCDRIKITIHKDGSVSS---EDNGRGIPVEIHPTEGVSA 95

Query: 67  -EIPMAVQR------HCTSKISDDFSNIH 88
            E+ M          H T K+S     + 
Sbjct: 96  LELVMCTLHAGGKFDHSTYKVSGGLHGVG 124


>gi|229112239|ref|ZP_04241779.1| hypothetical protein bcere0018_44810 [Bacillus cereus Rock1-15]
 gi|228671223|gb|EEL26527.1| hypothetical protein bcere0018_44810 [Bacillus cereus Rock1-15]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 31  IENSLDA-ESSRV-ETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+L+A     +    +   GK +    + DNG G+  E +P   +   T+K
Sbjct: 308 IKNALEAMGQGGILHLQLENKGKEYVMISVIDNGHGIKQENLPRVTEAFYTTK 360


>gi|210134704|ref|YP_002301143.1| DNA gyrase subunit B [Helicobacter pylori P12]
 gi|210132672|gb|ACJ07663.1| DNA gyrase subunit B [Helicobacter pylori P12]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     +   +   G     + DNG G+  +
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD 79


>gi|218439796|ref|YP_002378125.1| heat shock protein 90 [Cyanothece sp. PCC 7424]
 gi|218172524|gb|ACK71257.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7424]
          Length = 669

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 36/149 (24%)

Query: 27  IKELIENSLDAESS-----------------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI NS+DA S                   +   +    K+   I+DNG GMT EE+ 
Sbjct: 32  LRELISNSVDAISKLKMASLSGDFKQEVTEPEIVISVDKENKTL-SISDNGIGMTVEEVK 90

Query: 70  MAVQRHCTS----------KISDDFSNIHTFGFRGEALPSIGAVS-HLTL--MSRPPQNN 116
             + +   S          K ++DF      GF      S   V+  + +  +S      
Sbjct: 91  KYINQVAFSSAEDFINKYQKSANDFIGHFGLGF-----YSAFMVAKKVEIDTLSYQEGAQ 145

Query: 117 TGAQIAISGEKISSVRPVAMNPGTIVEVR 145
                     +           GT V + 
Sbjct: 146 AVHWSCDGSPEFELSDSSRTEVGTTVTLT 174


>gi|218246383|ref|YP_002371754.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166861|gb|ACK65598.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGA 102
             Q+ D G G++ EE+P+   R              + G  G  L SI +
Sbjct: 370 LIQVQDTGIGISPEELPLIFDRFY----RTQSDRARSTGGAGLGL-SIAS 414


>gi|218905899|ref|YP_002453733.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218534871|gb|ACK87269.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|99081581|ref|YP_613735.1| DNA topoisomerase IV subunit B [Ruegeria sp. TM1040]
 gi|99037861|gb|ABF64473.1| DNA topoisomerase IV B subunit [Ruegeria sp. TM1040]
          Length = 669

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A  ++R+E  +         + DNG G+  +
Sbjct: 65  VAEILDNSMDEAVAGHANRIEVELHAD--YSLTVRDNGRGIPID 106


>gi|72388571|gb|AAZ67929.1| DNA gyrase subunit B [Psychrobacter marincola]
          Length = 751

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    +++ +I         ++DNG G+  +
Sbjct: 21 EVVDNSIDEALAGHCDQIDIIIHED--ESVSVSDNGRGVPVD 60


>gi|72388579|gb|AAZ67933.1| DNA gyrase subunit B [Psychrobacter submarinus]
          Length = 749

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    +++ +I         ++DNG G+  +
Sbjct: 22 EVVDNSIDEALAGHCDQIDIIIHED--ESVSVSDNGRGVPVD 61


>gi|30022844|ref|NP_834475.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|229130056|ref|ZP_04259018.1| hypothetical protein bcere0015_44940 [Bacillus cereus BDRD-Cer4]
 gi|229152979|ref|ZP_04281160.1| hypothetical protein bcere0011_45100 [Bacillus cereus m1550]
 gi|29898403|gb|AAP11676.1| Sporulation kinase [Bacillus cereus ATCC 14579]
 gi|228630399|gb|EEK87047.1| hypothetical protein bcere0011_45100 [Bacillus cereus m1550]
 gi|228653373|gb|EEL09249.1| hypothetical protein bcere0015_44940 [Bacillus cereus BDRD-Cer4]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 31  IENSLDA-ESSRV-ETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+L+A     +    +   GK +    + DNG G+  E +P   +   T+K
Sbjct: 308 IKNALEAMGQGGILHLQLENKGKEYVMISVIDNGHGIKQENLPRVTEAFYTTK 360


>gi|332225799|ref|XP_003262071.1| PREDICTED: structural maintenance of chromosomes flexible hinge
           domain-containing protein 1 [Nomascus leucogenys]
          Length = 2005

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 147 ELIDNSLSATSRNVGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQL 194


>gi|330507223|ref|YP_004383651.1| DNA gyrase subunit B [Methanosaeta concilii GP-6]
 gi|328928031|gb|AEB67833.1| DNA gyrase, B subunit [Methanosaeta concilii GP-6]
          Length = 630

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 27 IKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
          + E+++NS+D A     S ++  I  GG     I D+G G+  +  P
Sbjct: 41 VYEVVDNSVDEALGGFCSEIDVTINPGG--SVSIRDDGRGIPVDNHP 85


>gi|322830737|ref|YP_004210764.1| DNA gyrase, B subunit [Rahnella sp. Y9602]
 gi|321165938|gb|ADW71637.1| DNA gyrase, B subunit [Rahnella sp. Y9602]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 82/265 (30%), Gaps = 28/265 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A     ++  I     +   + D+G G+      EE   A Q      H
Sbjct: 42  EVVDNAIDEALAGHCKEIQVTIHAD--NSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L+ R               +    V  
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHTQTYVHGEPQDPLKVIG 158

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
                GT V         P+   F    + E  ++   +R ++     V+     +    
Sbjct: 159 DTDVTGTTVRF------WPSFNTFTNHTEFEYEILAKRLRELSFLNSGVAIRL--LDKRD 210

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K +     G     +  +       +       + +  +     +   N G     Y F
Sbjct: 211 GKNDHFHYEGGIKAFVEYLNKNKTPIHPTVFYFSTMKDDIGVEVALQW-NDGFQENIYCF 269

Query: 254 INGRTVQDKFIL-STIRTAYAETIP 277
            N    +D     +  R+A   T+ 
Sbjct: 270 TNNIPQRDGGTHLAGFRSAMTRTLN 294


>gi|309783960|ref|ZP_07678605.1| sensor protein zraS [Shigella dysenteriae 1617]
 gi|308928331|gb|EFP73793.1| sensor protein zraS [Shigella dysenteriae 1617]
          Length = 455

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +    + GG      +TD+G G+ ++++      + T
Sbjct: 345 DRLTQVLLNLYLNAIQAIGQHGVISVTASEGGAGVKISVTDSGKGIAADQLEAIFTPYFT 404

Query: 78  SK 79
           +K
Sbjct: 405 TK 406


>gi|315586815|gb|ADU41196.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Helicobacter
          pylori 35A]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|297702318|ref|XP_002828131.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes flexible hinge domain-containing protein
           1-like [Pongo abelii]
          Length = 1852

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 147 ELIDNSLSATSRNLGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQL 194


>gi|297275034|ref|XP_001086253.2| PREDICTED: structural maintenance of chromosomes flexible hinge
           domain-containing protein 1-like [Macaca mulatta]
          Length = 2005

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 147 ELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQL 194


>gi|296222322|ref|XP_002807540.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes flexible hinge domain-containing protein
           1-like, partial [Callithrix jacchus]
          Length = 1849

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 147 ELIDNSLSATSRNTGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQL 194


>gi|289523899|ref|ZP_06440753.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
 gi|289502555|gb|EFD23719.1| DNA gyrase, B subunit [Anaerobaculum hydrogeniformans ATCC
          BAA-1850]
          Length = 645

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMA 71
          + E+++N++D   A    +V  ++   G     + DNG G+  +  P  
Sbjct: 53 VYEVVDNAIDEAMAGYCDQVSVIVYPDG--SVSVEDNGRGIPVDTHPKV 99


>gi|257168206|gb|ACV40236.1| DNA gyrase subunit B [Yersinia aldovae]
          Length = 279

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 13  EVVDNAIDEALAGHCKEIIVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 69

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 70  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMV 128

Query: 134 VAMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
                 GT V         P+   F  + + +  ++   +R ++     VS      +++
Sbjct: 129 GETELTGTTVRF------WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDNRND 182

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           +         G     +  +       +       + +  +     +   N G     Y 
Sbjct: 183 KED--HFHYEGGIRAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 239

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 240 FTNNIPQRD 248


>gi|256420269|ref|YP_003120922.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256035177|gb|ACU58721.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 368

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++NS+     D   +     +    +   +I+D+G G+  E +P   +R  
Sbjct: 267 LVDNSIKYGRTD-GHTVASIYVMDDKRVLMEISDDGIGIAEEHLPRVFERFY 317


>gi|239904642|ref|YP_002951380.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1]
 gi|239794505|dbj|BAH73494.1| DNA gyrase subunit B [Desulfovibrio magneticus RS-1]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQR-------- 74
           + E+++NS+D   A    R+   I     +   ++DNG G+  +  P   +         
Sbjct: 44  VYEVVDNSIDESMAGYCDRIGITIHLD--NSVTVSDNGRGIPVDIHPKEGRPAVEVVMTV 101

Query: 75  -HCTSKISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQIA 122
            H   K  +D   + + G  G  +  + A+S  L +  R        +  
Sbjct: 102 LHAGGKFDNDAYKV-SGGLHGVGVSVVNALSEYLEVTVRRGGKKHHQRYE 150


>gi|238759587|ref|ZP_04620749.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236]
 gi|238702246|gb|EEP94801.1| DNA gyrase subunit B [Yersinia aldovae ATCC 35236]
          Length = 804

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 78/249 (31%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 42  EVVDNAIDEALAGHCKEIIVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 98

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 99  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRRDGKVHEQTYKMGVPQAPLKMV 157

Query: 134 VAMN-PGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
                 GT V         P+   F  + + +  ++   +R ++     VS      +++
Sbjct: 158 GETELTGTTVRF------WPSFQTFTNNIEFQYEILAKRLRELSFLNSGVSIKLKDNRND 211

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
           +         G     +  +       +       + +  +     +   N G     Y 
Sbjct: 212 KED--HFHYEGGIRAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 268

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 269 FTNNIPQRD 277


>gi|228917320|ref|ZP_04080874.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842310|gb|EEM87404.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|229147347|ref|ZP_04275696.1| hypothetical protein bcere0012_44770 [Bacillus cereus BDRD-ST24]
 gi|296505243|ref|YP_003666943.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|228636029|gb|EEK92510.1| hypothetical protein bcere0012_44770 [Bacillus cereus BDRD-ST24]
 gi|296326295|gb|ADH09223.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 31  IENSLDA-ESSRV-ETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+L+A     +    +   GK +    + DNG G+  E +P   +   T+K
Sbjct: 308 IKNALEAMGQGGILHLQLENKGKEYVMISVIDNGHGIKQENLPRVTEAFYTTK 360


>gi|242310079|ref|ZP_04809234.1| chaperone [Helicobacter pullorum MIT 98-5489]
 gi|239523376|gb|EEQ63242.1| chaperone [Helicobacter pullorum MIT 98-5489]
          Length = 628

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 38/140 (27%)

Query: 27  IKELIENSLDAESS------------------RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+ DA                     ++E       K+   I+DNG GM  +++
Sbjct: 29  LRELVSNASDALDKLQYLTLTDENLKSLSFEPKIEISF-DSEKNTLTISDNGIGMNEQDL 87

Query: 69  -------PMAVQRHCTSKISDDFSNIHTF------GFRGEALPSIGAV-SHLTLMSRPPQ 114
                    +  ++  SK+S D             GF      S   V S + + ++   
Sbjct: 88  IENLGTIAKSGTKNFLSKLSGDKKKDSALIGQFGVGF-----YSAFMVASKIIVTTKKAG 142

Query: 115 NNTGAQIAISGEKISSVRPV 134
              G      G     +   
Sbjct: 143 EAQGYAWISDGSGEFEIEKC 162


>gi|217034369|ref|ZP_03439784.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10]
 gi|216943164|gb|EEC22634.1| hypothetical protein HP9810_889g14 [Helicobacter pylori 98-10]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
          + E+++N++D   A     +   +   G     + DNG G+  +        H T KI
Sbjct: 38 VYEVVDNAVDESMAGFCDTINITLTDEG--SCIVEDNGRGIPVD-------IHPTEKI 86


>gi|307153140|ref|YP_003888524.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
 gi|306983368|gb|ADN15249.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
          Length = 358

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 41  RVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           RVE  +   G     +I DNG G+T  E+P   +R  
Sbjct: 266 RVEVKLETEGDFQLVKILDNGQGITPNELPHLFERFY 302


>gi|329755339|ref|NP_001193329.1| structural maintenance of chromosomes flexible hinge
           domain-containing protein 1 [Bos taurus]
 gi|296473726|gb|DAA15841.1| structural maintenance of chromosomes flexible hinge domain
           containing 1 [Bos taurus]
          Length = 1997

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 144 ELIDNSLSATSRNNGVRRIQIKLHFDETQGKPAVAVIDNGRGMTSKQL 191


>gi|196039037|ref|ZP_03106344.1| sensor histidine kinase ResE [Bacillus cereus NVH0597-99]
 gi|196030182|gb|EDX68782.1| sensor histidine kinase ResE [Bacillus cereus NVH0597-99]
          Length = 591

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A     +       G   F++ D+G G+  E+IP    R  
Sbjct: 489 LIDNAIRHTNAGGHVTLVIDTKNNGL-IFEVQDSGVGIPEEDIPFLFDRFY 538


>gi|153853358|ref|ZP_01994767.1| hypothetical protein DORLON_00756 [Dorea longicatena DSM 13814]
 gi|149754144|gb|EDM64075.1| hypothetical protein DORLON_00756 [Dorea longicatena DSM 13814]
          Length = 338

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 41  RVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            +   +    G+    I DNG G+ +E++P   ++  T
Sbjct: 248 EIRICLEEKRGRECLVIEDNGIGIQAEDLPRVFEKGFT 285


>gi|148839305|ref|NP_056110.2| structural maintenance of chromosomes flexible hinge
           domain-containing protein 1 [Homo sapiens]
 gi|187611512|sp|A6NHR9|SMHD1_HUMAN RecName: Full=Structural maintenance of chromosomes flexible hinge
           domain-containing protein 1
          Length = 2005

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 147 ELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQL 194


>gi|98990344|gb|ABF60241.1| DNA gyrase subunit B [Entomoplasma lucivorax]
          Length = 557

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT---SEE-----IPMAVQR-H 75
          E+++NS+D   A  +  V+  I    ++   + D+G G+    +++     + +   + H
Sbjct: 14 EILDNSIDEVMAGYAQHVKVTITK--ENEIVVQDDGRGIPVGINQDTGRPAVELVFTQLH 71

Query: 76 CTSKISDDFSNIH 88
             K   D   + 
Sbjct: 72 AGGKFDSDSYKVS 84


>gi|114672613|ref|XP_512045.2| PREDICTED: structural maintenance of chromosomes flexible hinge
           domain-containing protein 1 [Pan troglodytes]
          Length = 2005

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GMTS+++
Sbjct: 147 ELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQL 194


>gi|159899248|ref|YP_001545495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892287|gb|ABX05367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 665

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 3   IRKLSEKIINQIAAGEI-----------IERPSIAI------KELIENSL-DAESSRVET 44
           I+ L + I + + A E+           +  P+ A       +E I N+L  A+++ V  
Sbjct: 541 IKSLRDHIAS-LNAQEVAINLECEGEDSVLSPANAAGLYRIAQEAIANALRHAQATNVRV 599

Query: 45  VIAGGGK-SFFQITDNGFGMTSEEIPMAVQRH 75
             +   K +   + DNG G   + +  +  RH
Sbjct: 600 SFSFASKSTTLMVKDNGCGFDPDLLERSG-RH 630


>gi|82778821|ref|YP_405170.1| sensor protein ZraS [Shigella dysenteriae Sd197]
 gi|81242969|gb|ABB63679.1| sensor kinase for HydG hydrogenase 3 activity [Shigella dysenteriae
           Sd197]
          Length = 458

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +    + GG      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTASEGGAGVKISVTDSGKGIAADQLEAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|146296377|ref|YP_001180148.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409953|gb|ABP66957.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 583

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 30  LIENSLD------AESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L+ENS+            +E  +    G     +TDNG GM  E++   +Q
Sbjct: 485 LVENSIRHGIEPIIGKGTIEIKVFKKDGTIKIIVTDNGAGMPKEKLEEVLQ 535


>gi|119383065|ref|YP_914121.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119372832|gb|ABL68425.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 476

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 26  AIKELIENSL-DAE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC---TS 78
           A+  LI N+L  A  ++ V   +   GG +  ++ DNG G+       AV R     TS
Sbjct: 357 AVSNLISNALLHAGRAAVVTVRVGREGGDAVLEVEDNGPGIPPAARAAAVSRFARGQTS 415


>gi|330375657|gb|AEC13084.1| heat shock protein [Streptomyces pulveraceus]
          Length = 633

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 49/187 (26%)

Query: 27  IKELIENS----------------LDAESS--RVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++EL+ N+                LDA++S   +E  +    ++   + DNG GM+ +E+
Sbjct: 31  LRELVSNASDALDKLRLAALRDDGLDADTSDPHIEIELDQKARTL-TVRDNGIGMSYDEV 89

Query: 69  PMAVQRHCTS---------KISDDFSNIHTF------GFRGEALPSIGAVSH-LTLMSRP 112
              +     S         K + D +           GF      S   V+  +TL++R 
Sbjct: 90  GKLIGTIANSGTAAFLQELKEAQDAAGAEGLIGQFGVGF-----YSGFMVADEMTLVTRR 144

Query: 113 PQNNTGAQIAIS---GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLIT 169
               +G + +        + +V  V       + ++      PA  +    +      I 
Sbjct: 145 AGERSGTRWSSRGEGTYTLETVDDVPQGSAVTLHLK------PADADDQLHDYTSAWKIK 198

Query: 170 DVIRRMA 176
           ++++R +
Sbjct: 199 EIVKRYS 205


>gi|319793673|ref|YP_004155313.1| pas/pac sensor hybrid histidine kinase [Variovorax paradoxus EPS]
 gi|315596136|gb|ADU37202.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus EPS]
          Length = 647

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 25  IAIKELIENSL----DAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
             +  L+ N++    D    R+E  +   G +    ++DNG G+ S  +P       
Sbjct: 406 QVVCNLLNNAIKFTPDGG--RIEVRLREVGANAEVSVSDNGPGIPSAALPRVFMLFA 460


>gi|291521596|emb|CBK79889.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
          [Coprococcus catus GD/7]
          Length = 185

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 32 ENSLDAESS--RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
          +NS+ AE+S  ++   +          I DNG GMT+E+         T
Sbjct: 14 QNSVRAEASLIQISVDVDKAADKLTIIIEDNGCGMTAEQTDRVTDPFFT 62


>gi|297569591|ref|YP_003690935.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925506|gb|ADH86316.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 358

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 32  ENSLDA--ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           +N+++A  E  R++  I   G     ++D G G+   E+    + + T
Sbjct: 251 QNAIEAMPEGGRLQIEI---GADHITVSDQGRGIAPAELAKVFEPYYT 295


>gi|254518845|ref|ZP_05130901.1| two-component sensor histidine kinase [Clostridium sp. 7_2_43FAA]
 gi|226912594|gb|EEH97795.1| two-component sensor histidine kinase [Clostridium sp. 7_2_43FAA]
          Length = 466

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 30  LIENSLDAES--SRVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHC----TS 78
           LI NSL+  S  + V+  +       +   + DNG G+  E++     R+     TS
Sbjct: 369 LIINSLEHNSKDTIVDVFVLKKENNINII-VEDNGQGIRKEDLKNIFNRYYKGVNTS 424


>gi|171780276|ref|ZP_02921180.1| hypothetical protein STRINF_02064 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281624|gb|EDT47059.1| hypothetical protein STRINF_02064 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 489

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 37  AESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHC-TSKISDDFSNIHTFGFRG 94
           + S  +   +   G++   ++ D G G++ +++    +R   T K  +    + T G  G
Sbjct: 394 SGSRNIHVTLDVLGENAIVKVRDEGEGISQDDLNHIFERFYRTDKSRN---RVSTQGGLG 450

Query: 95  EALP 98
             L 
Sbjct: 451 IGLA 454


>gi|251796055|ref|YP_003010786.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543681|gb|ACT00700.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 491

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 36  DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           DA S  ++       ++   ++DNG G+  E +P   +R   S
Sbjct: 401 DAGSLSLKLYTEAA-EAVITVSDNGSGIAPEHLPHLFERFYRS 442


>gi|126699558|ref|YP_001088455.1| putative two-component sensor histidine kinase [Clostridium
           difficile 630]
 gi|115250995|emb|CAJ68824.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 467

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++V   +    +    I+DNG GM+ EE      R+ 
Sbjct: 383 TKVCVHVTLNERIEIIISDNGKGMSREEASNLFNRYY 419


>gi|76801901|ref|YP_326909.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76557766|emb|CAI49349.1| signal-transducing histidine kinase; probable PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 464

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 18  EIIERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           E I + + A+ EL+EN++   D  ++ V  V+   G +    I DNG  +   EI     
Sbjct: 355 EAIPKINQAVAELLENAIQHAD-GAAEVTAVVECQGERITINIIDNGPPIPENEIRPLFT 413

Query: 74  RHCTSKISDDFSNIH 88
                    D S I+
Sbjct: 414 -------EADLSAIN 421


>gi|119715850|ref|YP_922815.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536511|gb|ABL81128.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 455

 Score = 41.2 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 17/90 (18%)

Query: 23  PSIAIKELIENSLDAES----SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            + A++ L +N+    +    SRVE  +    G +  ++TD+G G+   +      R   
Sbjct: 350 LARALRNLTDNA----ARHCKSRVELRLSEANGSATIEVTDDGPGIPPTDRIRVFDRF-- 403

Query: 78  SKISDDFSNIHTFGFRGEALPSIG---AVS 104
             +  D S   + G  G  L SI    +VS
Sbjct: 404 --VRLDQSRARSQGGTGLGL-SIAREISVS 430


>gi|330818084|ref|YP_004361789.1| Putative CheA signal transduction histidine kinase [Burkholderia
           gladioli BSR3]
 gi|327370477|gb|AEA61833.1| Putative CheA signal transduction histidine kinase [Burkholderia
           gladioli BSR3]
          Length = 800

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 26/70 (37%)

Query: 24  SIAIK----ELIENSLD--------------AESSRVETVI-AGGGKSFFQITDNGFGMT 64
           +  +K     L+ N+LD              AE+  ++  +    G     ++D+G G  
Sbjct: 624 AGVLKDVFMHLLRNALDHGIEPVEARREIGKAEAGTIDIEVGVDAGMLQITVSDDGRG-- 681

Query: 65  SEEIPMAVQR 74
                +A++R
Sbjct: 682 -----LALER 686


>gi|326391417|ref|ZP_08212954.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992552|gb|EGD51007.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +++      G  + F + DNG G++ ++IP   +R  
Sbjct: 376 KIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFY 412


>gi|313674008|ref|YP_004052119.1| gaf sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940764|gb|ADR19956.1| GAF sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LI N++DA       +++ ++      F  + DNG G+ +E +        T
Sbjct: 286 LINNAVDAVGENGQIKLKVLLENNSLIFI-VEDNGKGIPTEMVDRIFDPFYT 336


>gi|304311656|ref|YP_003811254.1| Two-component sensor kinase [gamma proteobacterium HdN1]
 gi|301797389|emb|CBL45609.1| Two-component sensor kinase [gamma proteobacterium HdN1]
          Length = 381

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 15/81 (18%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDA-ESS-------RVETVIAGGGKSFFQI 56
            L E  I+QI  G+++         LI N+L A +SS        +   I    +   ++
Sbjct: 263 LLPEIAIDQILIGQVLSN-------LITNALRAMKSSDSFVGQLTIRAGIDFDDRIIVRV 315

Query: 57  TDNGFGMTSEEIPMAVQRHCT 77
            DNG G+++ +         T
Sbjct: 316 IDNGHGISAVDQEKIFSPFFT 336


>gi|294085122|ref|YP_003551882.1| DNA gyrase,subunit B [Candidatus Puniceispirillum marinum
          IMCC1322]
 gi|292664697|gb|ADE39798.1| DNA gyrase, B subunit [Candidatus Puniceispirillum marinum
          IMCC1322]
          Length = 816

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     V+ V+   G     +TDNG G+  +
Sbjct: 56 VYEVVDNAIDEALAGHCDLVQVVLNADG--SISVTDNGRGIPVD 97


>gi|218780781|ref|YP_002432099.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762165|gb|ACL04631.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 808

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 15/86 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENS---LDAESSR--------VETVIAGGGKSFF 54
           L E I + +A+ + +   S  +  L+ N+   + A +          +         S  
Sbjct: 672 LDESIPDILASPQQM---SQVVLNLVNNAVEAISANADDYGPGLKGGIVVKTQRRNSSLV 728

Query: 55  -QITDNGFGMTSEEIPMAVQRHCTSK 79
            Q+ D+G G+  E++        T K
Sbjct: 729 MQVMDDGPGIAPEDLNKVFDPFYTRK 754


>gi|218235997|ref|YP_002369579.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218163954|gb|ACK63946.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 417

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 31  IENSLDA-ESSRV-ETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSK 79
           I+N+L+A     +    +   GK +    + DNG G+  E +P   +   T+K
Sbjct: 308 IKNALEAMGQGGILHLQLENKGKEYVMISVIDNGHGIKQENLPRVTEAFYTTK 360


>gi|167638126|ref|ZP_02396404.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|177651128|ref|ZP_02933959.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|254736781|ref|ZP_05194487.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|167513943|gb|EDR89311.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|172082954|gb|EDT68016.1| sensor histidine kinase [Bacillus anthracis str. A0174]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|158336392|ref|YP_001517566.1| signal transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158306633|gb|ABW28250.1| signal transduction histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 471

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 30  LIENSLDA-ESS-------RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++DA   S       ++             ++ DNG G+  E     ++   T+K
Sbjct: 368 LLDNAIDALGESPPTSEPPKITIRTCQKNSCIRVEVEDNGPGIPPEITTRILEPFFTTK 426


>gi|119469982|ref|ZP_01612787.1| putative sensory box sensor histidine kinase in two-component
           regulatory system [Alteromonadales bacterium TW-7]
 gi|119446692|gb|EAW27965.1| putative sensory box sensor histidine kinase in two-component
           regulatory system [Alteromonadales bacterium TW-7]
          Length = 370

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)

Query: 24  SIAIKELIENSLD---AESSRVETVIAGGGKS------FFQITDNGFGMTSEEIPMAVQR 74
           + AI+ LI NS+    A +   E  ++              ++DNG G+   +     + 
Sbjct: 259 ASAIQNLIHNSIQVIGAGA---EVKLSAATDEQNPDFVRISVSDNGPGVDLTQAEKIFEP 315

Query: 75  HCTSK 79
             T+K
Sbjct: 316 FYTTK 320


>gi|116873948|ref|YP_850729.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742826|emb|CAK21950.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 459

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 30  LIENSL-----DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+ N++     D     ++  +       F ++ DNG G++  ++    +R   S
Sbjct: 360 LLTNAIKFTPQD---GNIQVRLYEKATNVFVEVQDNGVGISKTDMAKIFERFYKS 411


>gi|126436970|ref|YP_001072661.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. JLS]
 gi|126236770|gb|ABO00171.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. JLS]
          Length = 525

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 30  LIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L++N++DA   R    VE  +         ++ D+G GM  E    A+QR  ++K   D 
Sbjct: 427 LVDNAMDA-CDRDDPWVEVTVNQDETRLLMRVADSGAGMDPETFARAMQRGYSTK-PGDG 484

Query: 85  SNIHTFGFRGEALPSIGAVS 104
              H  G     L  +  V+
Sbjct: 485 KAHHGLG-----LALVAQVA 499


>gi|108801141|ref|YP_641338.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. MCS]
 gi|119870273|ref|YP_940225.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. KMS]
 gi|108771560|gb|ABG10282.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. MCS]
 gi|119696362|gb|ABL93435.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Mycobacterium sp. KMS]
          Length = 525

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 30  LIENSLDAESSR----VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L++N++DA   R    VE  +         ++ D+G GM  E    A+QR  ++K   D 
Sbjct: 427 LVDNAMDA-CDRDDPWVEVTVNQDETRLLMRVADSGAGMDPETFARAMQRGYSTK-PGDG 484

Query: 85  SNIHTFGFRGEALPSIGAVS 104
              H  G     L  +  V+
Sbjct: 485 KAHHGLG-----LALVAQVA 499


>gi|34396100|gb|AAQ65247.1| DNA gyrase subunit B [Entomoplasma melaleucae]
          Length = 536

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I    K+   I DNG G+  +
Sbjct: 9  EILDNSVDEALAGFCNEISIFITE--KNEIIIQDNGRGIPVD 48


>gi|49478723|ref|YP_038716.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206978115|ref|ZP_03238998.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|229198830|ref|ZP_04325524.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
 gi|49330279|gb|AAT60925.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206743651|gb|EDZ55075.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|228584666|gb|EEK42790.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|52140833|ref|YP_085996.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51974302|gb|AAU15852.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|90425613|ref|YP_533983.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB18]
 gi|90107627|gb|ABD89664.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB18]
          Length = 887

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 22/73 (30%)

Query: 27  IKELIENSLDA-ESSR-----------------VET---VIAGGGKSFFQITDNGFGMTS 65
           I+ELI+NS+DA  + R                 +      I  G      + D+G GM+ 
Sbjct: 387 IRELIQNSVDAIRARRFVDPHFRPTDDNKYPGLIRLSFEEIREGEFWLI-VEDDGVGMSE 445

Query: 66  EEIPMAVQRHCTS 78
             +  ++    TS
Sbjct: 446 RTVTRSLLDFGTS 458


>gi|219670311|ref|YP_002460746.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
 gi|219540571|gb|ACL22310.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
          Length = 654

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 30  LIENSL-------DAESS-RVETVIAGGGKSFFQITDNGFGMTSE 66
           L+EN++       +A+ + R++      G+   Q+TD+G G+  +
Sbjct: 547 LVENAIRHGIIQKEAKGTVRIKIS-RESGRIMIQVTDDGIGIPEQ 590


>gi|330505804|ref|YP_004382673.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina NK-01]
 gi|328920090|gb|AEB60921.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina NK-01]
          Length = 585

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAESSR----VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           R    I  L+ N+LDA +      +   IA  G S    + D+G G+  E +    +   
Sbjct: 480 RIEQVILNLLHNALDAMADSEPRVLLVRIAREGDSCLLSVEDSGGGIAEETLGRVFEPFF 539

Query: 77  TSK 79
           T+K
Sbjct: 540 TTK 542


>gi|324328565|gb|ADY23825.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|322689646|ref|YP_004209380.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           157F]
 gi|320460982|dbj|BAJ71602.1| two-component sensor kinase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 565

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   KIRK-LSE-KIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQIT 57
            I   L   +++ +I +  +I      ++ L+ N++D AE   +E  +A   K+    + 
Sbjct: 388 PIHTYLPNVQVLTRIDSRRVI----RIVRNLLANAVDFAEDRPIEVRVAANRKAVAISVR 443

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           D G G+  +++     R        D S     G  G  L  I 
Sbjct: 444 DYGVGIDEDKVAHVFDRFW----RGDLSRSRVTGGTGLGLA-IA 482


>gi|317481679|ref|ZP_07940713.1| hsp90-like protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916911|gb|EFV38299.1| hsp90-like protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 565

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   KIRK-LSE-KIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQIT 57
            I   L   +++ +I +  +I      ++ L+ N++D AE   +E  +A   K+    + 
Sbjct: 388 PIHTYLPNVQVLTRIDSRRVI----RIVRNLLANAVDFAEDRPIEVRVAANRKAVAISVR 443

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           D G G+  +++     R        D S     G  G  L  I 
Sbjct: 444 DYGVGIDEDKVAHVFDRFW----RGDLSRSRVTGGTGLGLA-IA 482


>gi|313887781|ref|ZP_07821463.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846390|gb|EFR33769.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 602

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++       G     ++TDNG G+  E++P   +R  
Sbjct: 506 KIVIDATNKGDLVEIKVTDNGIGIPKEDLPRITERFY 542


>gi|312132347|ref|YP_003999686.1| baes2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773968|gb|ADQ03456.1| BaeS2 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 565

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   KIRK-LSE-KIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQIT 57
            I   L   +++ +I +  +I      ++ L+ N++D AE   +E  +A   K+    + 
Sbjct: 388 PIHTYLPNVQVLTRIDSRRVI----RIVRNLLANAVDFAEDRPIEVRVAANRKAVAISVR 443

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           D G G+  +++     R        D S     G  G  L  I 
Sbjct: 444 DYGVGIDEDKVAHVFDRFW----RGDLSRSRVTGGTGLGLA-IA 482


>gi|296454574|ref|YP_003661717.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184005|gb|ADH00887.1| histidine kinase sensor of two-component system [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 518

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 2   KIRK-LSE-KIINQIAAGEIIERPSIAIKELIENSLD-AESSRVETVIAGGGKSF-FQIT 57
            I   L   +++ +I +  +I      ++ L+ N++D AE   +E  +A   K+    + 
Sbjct: 341 PIHTYLPNVQVLTRIDSRRVI----RIVRNLLANAVDFAEDRPIEVRVAANRKAVAISVR 396

Query: 58  DNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIG 101
           D G G+  +++     R        D S     G  G  L  I 
Sbjct: 397 DYGVGIDEDKVAHVFDRFW----RGDLSRSRVTGGTGLGLA-IA 435


>gi|256823223|ref|YP_003147186.1| DNA topoisomerase IV subunit B [Kangiella koreensis DSM 16069]
 gi|256796762|gb|ACV27418.1| DNA topoisomerase IV, B subunit [Kangiella koreensis DSM 16069]
          Length = 629

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+   +E+I+NS+D   A  +  ++  +     S  ++ D+G GM  +
Sbjct: 32 RPNHLGQEVIDNSVDEALAGHAKTIKVTLHKD--SSLEVEDDGRGMPVD 78


>gi|224369432|ref|YP_002603596.1| DNA topoisomerase IV subunit B [Desulfobacterium autotrophicum
           HRM2]
 gi|223692149|gb|ACN15432.1| ParE [Desulfobacterium autotrophicum HRM2]
          Length = 651

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 15/67 (22%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----IPMAVQR-H 75
           E+I+NS+D   A  ++R++ V+        ++ DNG GM      EE    + + + R H
Sbjct: 50  EVIDNSVDEAIAGFANRIDVVLHADNC--LEVGDNGRGMPVDIHPEEGVTGVELILTRLH 107

Query: 76  CTSKISD 82
             +K S+
Sbjct: 108 AGAKFSN 114


>gi|222098143|ref|YP_002532200.1| two component system histidine kinase [Bacillus cereus Q1]
 gi|221242201|gb|ACM14911.1| Two component system histidine kinase [Bacillus cereus Q1]
          Length = 484

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|167835280|ref|ZP_02462163.1| C4-dicarboxylate transport sensor protein [Burkholderia
           thailandensis MSMB43]
          Length = 661

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           R++  I     +    + DNG G+  E +    +   T+K
Sbjct: 568 RIDVTIRATAATLAIVVRDNGPGIAPESLARLFEPFFTTK 607


>gi|198245745|ref|YP_002218195.1| sensory histidine kinase DcuS [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197940261|gb|ACH77594.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326625995|gb|EGE32340.1| sensor protein DcuS [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 543

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 30  LIENSLDAESSR----VETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           LIEN+L+A S      +   +    G    +++D+G G+ SE I    ++  +SK ++  
Sbjct: 442 LIENALEALSQESGGEISVSLHYRHGWLHCEVSDDGPGIESERIEAIFEKGVSSKGAE-- 499

Query: 85  SNIHTFGFRGEALP 98
                   RG  L 
Sbjct: 500 --------RGVGLA 505


>gi|222480797|ref|YP_002567034.1| histidine kinase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453699|gb|ACM57964.1| histidine kinase [Halorubrum lacusprofundi ATCC 49239]
          Length = 298

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 17/75 (22%)

Query: 16  AGEIIERPSIAIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMA 71
           A E IE P   I+E+ EN++   D    R++  +   G  +  +++DNG G+ ++E   A
Sbjct: 191 ADESIEYP---IQEVFENAVTHNDESVRRIDARVTENGSTACLEVSDNGPGIPADE--RA 245

Query: 72  VQR--------HCTS 78
           V R        H +S
Sbjct: 246 VLRAEEETPLSHASS 260


>gi|108759910|ref|YP_633144.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463790|gb|ABF88975.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 535

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 30  LIENSL----DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           L+EN+L    D  + R+ T I    G+   ++ D+G G+  E +P   Q   T
Sbjct: 424 LLENALLALRDVPAPRLRTSIEQASGRLLVRVEDSGPGIPPELLPRLFQPFVT 476


>gi|158321846|ref|YP_001514353.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142045|gb|ABW20357.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 669

 Score = 41.2 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 30  LIENSLDAESS--RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N++DA     ++   +     G    +  D G G+  ++I        T+K
Sbjct: 570 LISNAIDATPRGGKITINVYPHNQGM-VIECVDTGEGIDPKDIERIFNPFYTTK 622


>gi|332975318|gb|EGK12216.1| sensor histidine kinase LytS [Desmospora sp. 8437]
          Length = 586

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)

Query: 23  PSIAIKELIENSL-----DAESS-RVETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQ 73
           P   I+ L+ENS+     DA S  +VE     G  G     + DNG G  ++ +    +
Sbjct: 472 PPSTIQPLVENSIQHGLKDATSGGKVEIETRKGKEGI-RIIVRDNGCGFAADILEQVGK 529


>gi|315498430|ref|YP_004087234.1| integral membrane sensor hybrid histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416442|gb|ADU13083.1| integral membrane sensor hybrid histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 717

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 20/70 (28%)

Query: 30  LIENSLDA----ESSRVETV---------IAGG-------GKSFFQITDNGFGMTSEEIP 69
           L+ N+ DA       RV+           +A G       G +  +++DNG G+  E + 
Sbjct: 453 LVVNARDAVHASGGGRVKIRSAALTQAEAVAQGWADAPAQGAALIEVSDNGPGIPPEIMT 512

Query: 70  MAVQRHCTSK 79
              +   T+K
Sbjct: 513 KVFEPFFTTK 522


>gi|304437923|ref|ZP_07397869.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369063|gb|EFM22742.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     V   I     +   +TDNG G+  +
Sbjct: 92  VYEVVDNSIDEALAGYCDTVGVTIHKD--NSITVTDNGRGIPVD 133


>gi|301633245|gb|ADK86799.1| DNA topoisomerase IV, B subunit [Mycoplasma pneumoniae FH]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          E+++N +D   +  ++ +  V+    ++   ++DNG G+         + H  SKIS   
Sbjct: 41 EILDNCVDEVLSGFANTIAVVLHA--ENQITVSDNGRGIP-------FETHSDSKIST-I 90

Query: 85 SNIHTF 90
            + T+
Sbjct: 91 DTVFTY 96


>gi|261884018|ref|ZP_06008057.1| DNA gyrase subunit B [Campylobacter fetus subsp. venerealis str.
          Azul-94]
          Length = 88

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFG 62
          E+++NS+D   A   + ++  I     ++ ++ DNG G
Sbjct: 47 EIVDNSIDEALAGYCNHIQVTIEKD--NWIRVEDNGRG 82


>gi|302413623|ref|XP_003004644.1| DNA mismatch repair protein [Verticillium albo-atrum VaMs.102]
 gi|261357220|gb|EEY19648.1| DNA mismatch repair protein [Verticillium albo-atrum VaMs.102]
          Length = 637

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 22/130 (16%)

Query: 422 TTDGLVIVDQHAAHERLIFEKMR------QDFNSTKITSQTLLTPEIIDLLEGECALIME 475
               LV+VDQHAA ER   E +        +    +  +  L  P   +L   EC L+  
Sbjct: 506 NNTMLVVVDQHAADERCKLEALMKGYFVLDNNAVLRAETMVLSAPLTFELSSKECELLRR 565

Query: 476 HDEDLHRLGIKAERFGP---------NAIAIREIPAILSKK--NIPQLLRDIIDEIIDSS 524
                   GI                + I +R +P  + K+  + P+LL D++       
Sbjct: 566 RTSHFEDWGIIYIITSTAQTSGSAQLSTIEVRSLPPSILKRCMDEPKLLVDLLRH----- 620

Query: 525 TTYTLQDRIE 534
             + L++R  
Sbjct: 621 EVWRLEERRH 630


>gi|253699311|ref|YP_003020500.1| histidine kinase [Geobacter sp. M21]
 gi|251774161|gb|ACT16742.1| histidine kinase [Geobacter sp. M21]
          Length = 542

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            GG +F ++ DNG G+  + +        ++K
Sbjct: 444 DGGAAFIRVVDNGCGIPDDHLTKIFDPFFSTK 475


>gi|240146989|ref|ZP_04745590.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
 gi|257200860|gb|EEU99144.1| DNA gyrase, B subunit [Roseburia intestinalis L1-82]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A +   +   +   G     + DNG G+ 
Sbjct: 43 EIVDNAVDEHLAGACDTICVTLEADG--SCTVEDNGRGVP 80


>gi|238926604|ref|ZP_04658364.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
 gi|238885550|gb|EEQ49188.1| DNA gyrase subunit B [Selenomonas flueggei ATCC 43531]
          Length = 685

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++NS+D   A     V   I     +   +TDNG G+  +
Sbjct: 92  VYEVVDNSIDEALAGYCDTVGVTIHKD--NSITVTDNGRGIPVD 133


>gi|255306943|ref|ZP_05351114.1| putative two-component sensor histidine kinase [Clostridium
           difficile ATCC 43255]
          Length = 467

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++V   +    +    I+DNG GM+ EE      R+ 
Sbjct: 383 TKVCVHVTLNERIEIIISDNGKGMSREEASNLFNRYY 419


>gi|226326150|ref|ZP_03801668.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758]
 gi|225205692|gb|EEG88046.1| hypothetical protein COPCOM_03969 [Coprococcus comes ATCC 27758]
          Length = 648

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     ++  I     +   + DNG G+ 
Sbjct: 49 VYEIVDNSVDEALAGYCDHIQVFINPD--NSITVIDNGRGIP 88


>gi|254457023|ref|ZP_05070451.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
 gi|207085815|gb|EDZ63099.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
          Length = 424

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 19/68 (27%)

Query: 30  LIENSLDAESSRVETVIAG---------------GGKSFFQITDNGFGMTSEEIPMAVQR 74
           L+ N++DA    ++  I                   +   ++ DNG G+ ++ I      
Sbjct: 317 LLNNAVDA----IKINIEEKNIEQGNITITLSCKNNQGIIEVYDNGNGIDADIIDSIFDP 372

Query: 75  HCTSKISD 82
           + T+K   
Sbjct: 373 YFTTKYHS 380


>gi|170761589|ref|YP_001785609.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408578|gb|ACA56989.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 349

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 40  SRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
             +   I          I DNG G+  E++        T K
Sbjct: 257 KNINLKIEEDTAKIIVSIEDNGIGIPKEDLGRVFNAFFTGK 297


>gi|116696498|ref|YP_842074.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530997|emb|CAJ97344.1| signal transduction histidine kinase [Ralstonia eutropha H16]
          Length = 442

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 30  LIENS---LDAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L++N+   + A S R++ ++   A G      ++DNG G+ +EE      R  
Sbjct: 345 LLDNALAYIPAGS-RIDVLVGRSADGRAVELVVSDNGPGIPAEERARVFDRFY 396


>gi|13507861|ref|NP_109810.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129]
 gi|2501299|sp|P78016|PARE_MYCPN RecName: Full=DNA topoisomerase 4 subunit B; AltName:
          Full=Topoisomerase IV subunit B
 gi|1673680|gb|AAB95680.1| topoisomerase IV subunit B [Mycoplasma pneumoniae M129]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 14/66 (21%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
          E+++N +D   +  ++ +  V+    ++   ++DNG G+         + H  SKIS   
Sbjct: 41 EILDNCVDEVLSGFANTIAVVLHA--ENQITVSDNGRGIP-------FETHSDSKIST-I 90

Query: 85 SNIHTF 90
            + T+
Sbjct: 91 DTVFTY 96


>gi|60681652|ref|YP_211796.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
 gi|60493086|emb|CAH07867.1| putative two-component regulatory system histidine kinase
           [Bacteroides fragilis NCTC 9343]
          Length = 511

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---RVET--VIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    I+ L++N+  A+ +    ++    ++  G+  +  + D G G+ S++     +R 
Sbjct: 403 RLRQVIEHLLDNA--AKFTVKGHIDIGYALSDHGEKIYVFVADTGCGIPSDQYKKVFERF 460

Query: 76  CTSKISD 82
              KI+ 
Sbjct: 461 Y--KINS 465


>gi|30264742|ref|NP_847119.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47530215|ref|YP_021564.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187560|ref|YP_030813.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65322039|ref|ZP_00394998.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869725|ref|ZP_02214383.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634004|ref|ZP_02392327.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170685756|ref|ZP_02876979.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705544|ref|ZP_02896008.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190568318|ref|ZP_03021226.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227817461|ref|YP_002817470.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229604734|ref|YP_002868950.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254687480|ref|ZP_05151336.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254725043|ref|ZP_05186826.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741818|ref|ZP_05199505.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754584|ref|ZP_05206619.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254757416|ref|ZP_05209443.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30259417|gb|AAP28605.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47505363|gb|AAT34039.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181487|gb|AAT56863.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164714554|gb|EDR20073.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167530805|gb|EDR93507.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129669|gb|EDS98532.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670220|gb|EDT20960.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|190560574|gb|EDV14551.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227002759|gb|ACP12502.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229269142|gb|ACQ50779.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|212219466|ref|YP_002306253.1| DNA topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154]
 gi|212013728|gb|ACJ21108.1| topoisomerase IV subunit B [Coxiella burnetii CbuK_Q154]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+    E I+NS+D   A  +  VE ++   G    ++ D+G GM  +
Sbjct: 42 RPNHLAHEAIDNSVDEAIAGFAQNVEVILYKDG--SLEVIDDGRGMPID 88


>gi|161348145|ref|ZP_02095533.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat
          Q177']
 gi|164601296|gb|EDQ95073.1| DNA topoisomerase IV, B subunit [Coxiella burnetii 'MSU Goat
          Q177']
          Length = 636

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 22 RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          RP+    E I+NS+D   A  +  VE ++   G    ++ D+G GM  +
Sbjct: 37 RPNHLAHEAIDNSVDEAIAGFAQNVEVILYKDG--SLEVIDDGRGMPID 83


>gi|154324038|ref|XP_001561333.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|150842647|gb|EDN17840.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 840

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 31  IENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
           I+N++   D  S  +   +   G      + D G G+T E      Q H
Sbjct: 548 IDNAIKFTDGGSITITVKLNNTGHMIEIWVVDTGCGITEESRSRLFQPH 596


>gi|148658559|ref|YP_001278764.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148570669|gb|ABQ92814.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 718

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 16/66 (24%)

Query: 17  GEIIERPSIAIKELIENSLDAESS----RVET--VIAGGGKSFFQITDNGFGMTSEEIPM 70
           G+++         LIEN++  +++     +     +        +++D G G+ + E+  
Sbjct: 609 GQVLTN-------LIENAI--KATPAGGTISVSADVHDQEV-RVRVSDTGVGIPASELGK 658

Query: 71  AVQRHC 76
             QR  
Sbjct: 659 IFQRFY 664


>gi|39726331|gb|AAR30110.1| putative histidine kinase HHK17p [Botryotinia fuckeliana]
          Length = 882

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 31  IENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRH 75
           I+N++   D  S  +   +   G      + D G G+T E      Q H
Sbjct: 606 IDNAIKFTDGGSITITVKLNNTGHMIEIWVVDTGCGITEESRSRLFQPH 654


>gi|53711528|ref|YP_097520.1| HSP90 family protein [Bacteroides fragilis YCH46]
 gi|52214393|dbj|BAD46986.1| heat shock protein HtpG [Bacteroides fragilis YCH46]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 21/76 (27%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----------ESSRVETVIAGGGKS 52
          I  LSE I +          P+  ++EL++NS+DA           S R++  + G G  
Sbjct: 17 IALLSEHIYS---------NPNTFVRELLQNSVDAITALHNIDENYSGRIDVFLNGDGSM 67

Query: 53 FFQITDNGFGMTSEEI 68
           FQ  DNG G+  EE+
Sbjct: 68 VFQ--DNGIGLKEEEV 81


>gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 30  LIENSLDAESS--RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           L+ N++   ++   +   +    GG  +  I DNG G+  +EIP+ + 
Sbjct: 387 LLSNAIKFTATGGEIRVRVGWTAGGGQYISIKDNGPGIPEDEIPIVLS 434


>gi|307326140|ref|ZP_07605337.1| putative sensor with HAMP domain [Streptomyces violaceusniger Tu
           4113]
 gi|306888083|gb|EFN19072.1| putative sensor with HAMP domain [Streptomyces violaceusniger Tu
           4113]
          Length = 949

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 16  AGEIIE----RPSIAIKELIENSLDAES-----SRVETV--IAGGGKSFFQITDNGFGMT 64
           A E+I       +  I EL++N   A +     ++V     +   G +  ++ D GFGM+
Sbjct: 534 AAEVIGYAAGDLARMIAELLDN---ATAFSPPETQVVVSNTLRLDGSALIEVRDEGFGMS 590

Query: 65  SEEIPMAVQR 74
             E+  A +R
Sbjct: 591 GAELAKAHRR 600


>gi|288958053|ref|YP_003448394.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910361|dbj|BAI71850.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 843

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 49  GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           GG     + D G G+  E +    +   T+K
Sbjct: 626 GGYVSIDVIDTGCGIARENLQRIFEPFYTTK 656


>gi|253564412|ref|ZP_04841869.1| heat shock protein HtpG [Bacteroides sp. 3_2_5]
 gi|251948188|gb|EES88470.1| heat shock protein HtpG [Bacteroides sp. 3_2_5]
 gi|301161254|emb|CBW20792.1| putative heat-shock protein [Bacteroides fragilis 638R]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 21/76 (27%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----------ESSRVETVIAGGGKS 52
          I  LSE I +          P+  ++EL++NS+DA           S R++  + G G  
Sbjct: 17 IALLSEHIYS---------NPNTFVRELLQNSVDAITALHNIDENYSGRIDVFLNGDGSM 67

Query: 53 FFQITDNGFGMTSEEI 68
           FQ  DNG G+  EE+
Sbjct: 68 VFQ--DNGIGLKEEEV 81


>gi|229152870|ref|ZP_04281053.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
 gi|228630690|gb|EEK87336.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++  +++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|197119995|ref|YP_002140422.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197089355|gb|ACH40626.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 379

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 31  IENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           I+N++    D     V   +    G     + DNG G+  E++P   ++  
Sbjct: 276 IDNAIKFSKDTG--LVCVTMRNRAGSCQISVEDNGIGIPKEQLPKIFEKFY 324


>gi|60679789|ref|YP_209933.1| HSP90 family protein [Bacteroides fragilis NCTC 9343]
 gi|60491223|emb|CAH05971.1| putative heat-shock protein [Bacteroides fragilis NCTC 9343]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 21/76 (27%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----------ESSRVETVIAGGGKS 52
          I  LSE I +          P+  ++EL++NS+DA           S R++  + G G  
Sbjct: 17 IALLSEHIYS---------NPNTFVRELLQNSVDAITALHNIDENYSGRIDVFLNGDGSM 67

Query: 53 FFQITDNGFGMTSEEI 68
           FQ  DNG G+  EE+
Sbjct: 68 VFQ--DNGIGLKEEEV 81


>gi|56477789|ref|YP_159378.1| two component sensor protein [Aromatoleum aromaticum EbN1]
 gi|56313832|emb|CAI08477.1| Two component sensor protein [Aromatoleum aromaticum EbN1]
          Length = 658

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 21/92 (22%)

Query: 1   MKIR-----KLSEKIINQIAAGEI-IERPSIAIKELIENSLDA------ESSRVETVI-A 47
           M+I      +L +     I A  + IE     I  L+ N +DA          V      
Sbjct: 532 MRIETDLAPRLPD-----IPADPVMIE---QVIVNLVRNGMDAMHDNPPGRRTVRVATRE 583

Query: 48  GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            GG+   ++ D+G G+  +      +   T+K
Sbjct: 584 EGGQLVVRVADSGRGIDPDIARRLFEPFFTTK 615


>gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e]
 gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL
           R2-561]
 gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e]
          Length = 596

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 43  ETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
              +A        ++DNG G+  E+IP   +R  
Sbjct: 512 TIDVARSNL-VITVSDNGSGIAEEDIPYLFERFY 544


>gi|87119342|ref|ZP_01075240.1| C4-dicarboxylate transport sensor protein, putative [Marinomonas
           sp. MED121]
 gi|86165733|gb|EAQ67000.1| C4-dicarboxylate transport sensor protein, putative [Marinomonas
           sp. MED121]
          Length = 688

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 30  LIENSLDAE-----SSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI NSLDA      +  +             +I DNG G+  E I    +   TSK
Sbjct: 588 LISNSLDACDEHKIAPEIRFTSERINNNVQIRIHDNGPGVEPEAIAHLFEPFYTSK 643


>gi|107101230|ref|ZP_01365148.1| hypothetical protein PaerPA_01002263 [Pseudomonas aeruginosa PACS2]
 gi|116049748|ref|YP_791445.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892249|ref|YP_002441116.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|254234892|ref|ZP_04928215.1| hypothetical protein PACG_00767 [Pseudomonas aeruginosa C3719]
 gi|254240191|ref|ZP_04933513.1| hypothetical protein PA2G_00833 [Pseudomonas aeruginosa 2192]
 gi|313110494|ref|ZP_07796379.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|115584969|gb|ABJ10984.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126166823|gb|EAZ52334.1| hypothetical protein PACG_00767 [Pseudomonas aeruginosa C3719]
 gi|126193569|gb|EAZ57632.1| hypothetical protein PA2G_00833 [Pseudomonas aeruginosa 2192]
 gi|218772475|emb|CAW28257.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|310882881|gb|EFQ41475.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 24  SIAIKELIENSLDAES-SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           + A+  L+ N++   + SRVE  +   G S   ++ D+G G+ ++      +    S++ 
Sbjct: 324 ARAVINLLRNAI-RHAHSRVEIALLDQGDSCQIRVNDDGPGIPADARQKIFEPF--SRL- 379

Query: 82  DDFSNIHTFGF 92
           DD  +  T GF
Sbjct: 380 DDSRDRSTGGF 390


>gi|320103192|ref|YP_004178783.1| DNA topoisomerase type IIA subunit B region 2 domain-containing
           protein [Isosphaera pallida ATCC 43644]
 gi|319750474|gb|ADV62234.1| DNA topoisomerase type IIA subunit B region 2 domain protein
           [Isosphaera pallida ATCC 43644]
          Length = 889

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           E+++NS+D   A     +   I   G     ITD+G G+ 
Sbjct: 65  EVVDNSIDEAMAGYCKHIHVRIHPDG--SVSITDDGRGIP 102


>gi|300117495|ref|ZP_07055285.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298725330|gb|EFI65982.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 591

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A     +       G   F++ D+G G+  E+IP    R  
Sbjct: 489 LIDNAIRHTNAGGHVTLVIDTKNNGL-IFEVQDSGVGIPEEDIPFLFDRFY 538


>gi|297627028|ref|YP_003688791.1| Sensor-like histidine kinase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922793|emb|CBL57371.1| Sensor-like histidine kinase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 30  LIENSL---DAESSRVETVIAG-GGKS----FFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N++   D  + RV   +              +TDNG G+  EE     +R  
Sbjct: 271 LVANAISYSDRGA-RVAVTVRRVAQADDHWVEIAVTDNGIGIAPEEQERIFERFY 324


>gi|262369331|ref|ZP_06062659.1| signal transduction histidine kinase [Acinetobacter johnsonii
           SH046]
 gi|262315399|gb|EEY96438.1| signal transduction histidine kinase [Acinetobacter johnsonii
           SH046]
          Length = 554

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 23  PSIAIKELIENSLDAESSRVETV--IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
               ++ L+ N++     +V     I   G ++  + D+G G+  +E     +   
Sbjct: 429 LHRVVQNLVGNAVRYGDHQVLVSGGINDSGMAYVCVEDDGPGIPEDERERVFEAFA 484


>gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 904

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 21  ERPSIAIKELIENSL----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           +R S  +  L+ N++    D    R+   +     +   ++TD G G+  E+I    +R 
Sbjct: 621 DRISQVVINLLGNAIKYTPDGG--RIHIRVYPEPDRVHLEVTDTGIGIKPEDIGKLFKRF 678

Query: 76  CT 77
            T
Sbjct: 679 ST 680


>gi|217962157|ref|YP_002340727.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229141405|ref|ZP_04269943.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
 gi|217065095|gb|ACJ79345.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228642186|gb|EEK98479.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++   ++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|148284766|ref|YP_001248856.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong]
 gi|146740205|emb|CAM80488.1| DNA gyrase subunit B [Orientia tsutsugamushi str. Boryong]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS D   A   +++E ++   G     + DNG G+  +
Sbjct: 53 EVLDNSTDESLAGDCNKIEVILNKNG--SVTVRDNGRGIPVD 92


>gi|118471741|ref|YP_888230.1| GAF family protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173028|gb|ABK73924.1| GAF family protein [Mycobacterium smegmatis str. MC2 155]
          Length = 547

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 13  QIAAGEIIERPS------IAIKELIENSL-DAESSRVETVIAGGGKSFFQITDNGFGMTS 65
           +I+   +   P+        I E I N++  + ++ V   I    +   ++ DNG G+ +
Sbjct: 445 RISGPIVAVDPALADDAEAVIVEAISNAVRHSGATSVTISIEVSDRLDIEVVDNGRGIPA 504

Query: 66  EEIPMAVQ 73
                +  
Sbjct: 505 NTARCSGL 512


>gi|152989340|ref|YP_001349627.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150964498|gb|ABR86523.1| two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 402

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 20/99 (20%)

Query: 30  LIENSLDAE-SS---RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFS 85
           L+EN++ A  +    +V   + G       ++DNG GM +  +    +   T++      
Sbjct: 299 LVENAIQAGGADLRLKVHLYVRGDSLRL-SVSDNGPGMDATTLARLGEPFFTTR------ 351

Query: 86  NIHTFGFRGEALPSIGAVSH-----LTLMSRPPQNNTGA 119
              T    G  L  + AV+      L L SRP +     
Sbjct: 352 ATGT----GLGLAVVKAVARAHQGQLQLRSRPGRGTCAT 386


>gi|91228380|ref|ZP_01262307.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01]
 gi|91188079|gb|EAS74384.1| DNA topoisomerase IV subunit B [Vibrio alginolyticus 12G01]
          Length = 626

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 22  RPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE----------E 67
           RP+   +E+I+NS+D   A  +S+V+ ++        ++ D+G GM  +          E
Sbjct: 31  RPNHLGQEVIDNSVDEALAGHASKVQVILHAD--QSLEVIDDGRGMPVDIHPEEKVSGVE 88

Query: 68  IPMAVQRHCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQN--NTGAQIAIS 124
           + +  + H   K S+      + G  G  +  + A+S  + +  R          +    
Sbjct: 89  LIL-CKLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVTVRRDGQVYEIAFEHGEK 146

Query: 125 GEKISSVRPV-AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVS 183
              ++        N GT V              +  S       + + +R  A+  P + 
Sbjct: 147 VSDLTVTGTCGRRNRGTSVHFW-------PDAKYFDSANFSVTRLVNNLRAKAVLCPGLE 199

Query: 184 FTFSTIKSNRYKMNFQSTNGNFPERISQ 211
            T +       K           + +++
Sbjct: 200 ITLT--DKVNDKDYKWYYEDGLKDYLAE 225


>gi|29828798|ref|NP_823432.1| two-component system sensor kinase [Streptomyces avermitilis
           MA-4680]
 gi|29605903|dbj|BAC69967.1| putative two-component system sensor kinase [Streptomyces
           avermitilis MA-4680]
          Length = 512

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 13/63 (20%)

Query: 22  RPSIAIKELIENSLDAES-------SRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQ 73
           R    +  L+     A +       + V   +   GG    ++ D+G G+    +P   +
Sbjct: 378 RLHQVVANLL-----ANARVHTPPGTTVVASVEATGGSCTIRVRDDGPGIPPALLPTVFE 432

Query: 74  RHC 76
           R  
Sbjct: 433 RFT 435


>gi|89895526|ref|YP_519013.1| hypothetical protein DSY2780 [Desulfitobacterium hafniense Y51]
 gi|89334974|dbj|BAE84569.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 164

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 23  PSIAIKELIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
              A++ ++ N++    D     +   +   G   F ++D G G+  +++P   + + T 
Sbjct: 61  LQQAVENIVANAIRHSNDNGKIGISITVEK-GMYHFAVSDTGSGIELQDLPHIFEPYYTK 119

Query: 79  K 79
           K
Sbjct: 120 K 120


>gi|53713403|ref|YP_099395.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52216268|dbj|BAD48861.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 511

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---RVET--VIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    I+ L++N+  A+ +    ++    ++  G+  +  + D G G+ S++     +R 
Sbjct: 403 RLRQVIEHLLDNA--AKFTVKGHIDIGYALSDHGEKIYVFVADTGCGIPSDQYKKVFERF 460

Query: 76  CTSKISD 82
              KI+ 
Sbjct: 461 Y--KINS 465


>gi|300854604|ref|YP_003779588.1| putative two component sensor histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434719|gb|ADK14486.1| predicted two component sensor histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 337

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           ++   +    +    I D G G+  E++P   ++  T
Sbjct: 248 KISIYMEEASRKVLVIEDTGVGIAEEDLPRVFEKGFT 284


>gi|295979463|dbj|BAJ07404.1| DNA gyrase subunit B [Acinetobacter calcoaceticus subsp.
          anitratus]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 14 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 53


>gi|265763669|ref|ZP_06092237.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
 gi|263256277|gb|EEZ27623.1| two-component system histidine kinase [Bacteroides sp. 2_1_16]
          Length = 511

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---RVET--VIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    I+ L++N+  A+ +    ++    ++  G+  +  + D G G+ S++     +R 
Sbjct: 403 RLRQVIEHLLDNA--AKFTVKGHIDIGYALSDHGEKIYVFVADTGCGIPSDQYKKVFERF 460

Query: 76  CTSKISD 82
              KI+ 
Sbjct: 461 Y--KINS 465


>gi|265764922|ref|ZP_06093197.1| heat shock protein HtpG [Bacteroides sp. 2_1_16]
 gi|263254306|gb|EEZ25740.1| heat shock protein HtpG [Bacteroides sp. 2_1_16]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 21/76 (27%)

Query: 3  IRKLSEKIINQIAAGEIIERPSIAIKELIENSLDA----------ESSRVETVIAGGGKS 52
          I  LSE I +          P+  ++EL++NS+DA           S R++  + G G  
Sbjct: 17 IALLSEHIYS---------NPNTFVRELLQNSVDAITALHNIDENYSGRIDVFLNGDGSM 67

Query: 53 FFQITDNGFGMTSEEI 68
           FQ  DNG G+  EE+
Sbjct: 68 VFQ--DNGIGLKEEEV 81


>gi|257168232|gb|ACV40249.1| DNA gyrase subunit B [Yersinia enterocolitica]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 13  EVVDNAIDEALAGHCKEIIVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 69

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 70  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKVV 128

Query: 134 VAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
              +  GT V         P+   F  + + +  ++   +R ++     VS         
Sbjct: 129 AETDQTGTTVRF------WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLK--DKR 180

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             K +     G     +  +       +       + +  +     +   N G     Y 
Sbjct: 181 NDKEDHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 239

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 240 FTNNIPQRD 248


>gi|239982356|ref|ZP_04704880.1| two-component sensor kinase [Streptomyces albus J1074]
 gi|291454201|ref|ZP_06593591.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357150|gb|EFE84052.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 475

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 23  PSIAIKELIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
            +  +  L++N+    +SRVE  +   G ++   + D+G G+   E     +R 
Sbjct: 369 LARVVGNLVDNAQRHAASRVEVRVRTDGPEAVVSVADDGSGVPEPERERIFERF 422


>gi|239905929|ref|YP_002952668.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795793|dbj|BAH74782.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 642

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 22  RPSIAIKELIENSLDAE----SSRV-ETVIA---GGGKSFFQITDNGFGMTSEEIPMAVQ 73
             S A+  ++EN++DA     +  +               F I+DNG GM+ E    A  
Sbjct: 528 NLSAALVNILENAIDACTADTAKDIHSISFKASADADAVTFDISDNGMGMSQETREKAFT 587

Query: 74  RHCTSK 79
              +SK
Sbjct: 588 LFFSSK 593


>gi|228938688|ref|ZP_04101293.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971570|ref|ZP_04132194.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978181|ref|ZP_04138559.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228781653|gb|EEM29853.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228788229|gb|EEM36184.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821064|gb|EEM67084.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939196|gb|AEA15092.1| sensor protein resE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 591

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A     +       G   F++ D+G G+  E+IP    R  
Sbjct: 489 LIDNAIRHTNAGGHVTLVIDTKNNGL-IFEVQDSGVGIPEEDIPFLFDRFY 538


>gi|184156322|ref|YP_001844661.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|183207916|gb|ACC55314.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
          baumannii ACICU]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|152979030|ref|YP_001344659.1| integral membrane sensor signal transduction histidine kinase
           [Actinobacillus succinogenes 130Z]
 gi|150840753|gb|ABR74724.1| integral membrane sensor signal transduction histidine kinase
           [Actinobacillus succinogenes 130Z]
          Length = 457

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 40  SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           S ++  +    KS   + DNG G++ E++    QR  
Sbjct: 375 SDIKVRLK---KSSILVEDNGGGVSKEDLSKLGQRFY 408


>gi|86157066|ref|YP_463851.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773577|gb|ABC80414.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 373

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 22  RPSIAIKELIENSLDA----ESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           R +     L  N+ DA     + RVE     G     +++D+G G+  E++P       T
Sbjct: 263 RLAQVFLNLFLNAGDAMGGRGTLRVEARAVEGAVE-VEVSDDGPGIAPEDLPRVFDPFFT 321

Query: 78  SK 79
           +K
Sbjct: 322 TK 323


>gi|167036702|ref|YP_001664280.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|166855536|gb|ABY93944.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +++      G  + F + DNG G++ ++IP   +R  
Sbjct: 366 KIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFY 402


>gi|125975547|ref|YP_001039457.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281416558|ref|ZP_06247578.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125715772|gb|ABN54264.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281407960|gb|EFB38218.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 479

 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
           +++  +     +   +I DNG G++  ++P    R  
Sbjct: 392 KIDIFLREATSNVVIEIKDNGAGISESDLPYIFDRFY 428


>gi|323516067|gb|ADX90448.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
          baumannii TCDC-AB0715]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|322506191|gb|ADX01645.1| DNA gyrase subunit B [Acinetobacter baumannii 1656-2]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|302338128|ref|YP_003803334.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635313|gb|ADK80740.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 383

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 42  VETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           +E  +   G ++  +I+DNG GMT E      +   T+K
Sbjct: 301 IEIELEEVGSRAVIRISDNGTGMTEEVKSRVFEPFFTTK 339


>gi|300771306|ref|ZP_07081182.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761976|gb|EFK58796.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 751

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 26  AIKELIENSLD-AESSRVETVIAGGGKSF-FQITDNGFGMTSEEI 68
            I+EL+ N++  AE+S++   ++         + D+G G   +++
Sbjct: 663 IIQELVNNAIKHAEASQIIVQLSENDNRLHITVEDDGKGFDPQKL 707


>gi|295116045|emb|CBL36892.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
           [butyrate-producing bacterium SM4/1]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 25  IAIKELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             +K L+ N+++A    S   E  I     G +  F++ D+G G+++  +P   Q   ++
Sbjct: 325 AVLKNLVNNAIEAIESGSRSGEVKILERKSGDRYLFEVADDGPGISARHLPNIFQMGYST 384

Query: 79  KI 80
           K 
Sbjct: 385 KF 386


>gi|295090833|emb|CBK76940.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
           [Clostridium cf. saccharolyticum K10]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 25  IAIKELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             +K L+ N+++A    S   E  I     G +  F++ D+G G+++  +P   Q   ++
Sbjct: 325 AVLKNLVNNAIEAIESGSRSGEVKILERKSGDRYLFEVADDGPGISARHLPNIFQMGYST 384

Query: 79  KI 80
           K 
Sbjct: 385 KF 386


>gi|289768377|ref|ZP_06527755.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289698576|gb|EFD66005.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 577

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 22  RPSIAIKELIENSLDAESSRVET--VIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             + AI E ++NS++AE++ +    V + G        I DNG G+   ++   +    +
Sbjct: 33  DLTAAIGEPLDNSIEAEATLMRVLPVFSRGKKTIDSMIIADNGIGIDPTQMHHVLSMGYS 92

Query: 78  SKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
           S+           G  G  L  +  +S    + + S+   N       I  ++I   +  
Sbjct: 93  SRYG----KREGLGRFGVGLK-LAGLSLGERIDIYSKQTGNPKIYHSYIDLQEIRDGKQQ 147

Query: 135 A 135
            
Sbjct: 148 Y 148


>gi|257168280|gb|ACV40274.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168282|gb|ACV40275.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168284|gb|ACV40276.1| DNA gyrase subunit B [Yersinia ruckeri]
 gi|257168286|gb|ACV40277.1| DNA gyrase subunit B [Yersinia ruckeri]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 13  EVVDNAIDEALAGHCKEIIVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 69

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 70  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMV 128

Query: 134 VAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
              +  GT V         P+   F  + + +  ++   +R ++     VS         
Sbjct: 129 GETDQTGTTVRF------WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLK--DKR 180

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             K +     G     +  +       +       + +  +     +   N G     Y 
Sbjct: 181 NDKEDHFHYEGGIKAFVEYLNKNKTPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 239

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 240 FTNNIPQRD 248


>gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             G K   ++ DNG G++ E IP   +R  
Sbjct: 372 EEGDKIIIEVKDNGIGISKENIPRLFERFY 401


>gi|239503906|ref|ZP_04663216.1| DNA gyrase, B subunit [Acinetobacter baumannii AB900]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|238754008|ref|ZP_04615367.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473]
 gi|238707760|gb|EEQ00119.1| DNA gyrase subunit B [Yersinia ruckeri ATCC 29473]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 42  EVVDNAIDEALAGHCKEIIVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 98

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 99  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYKMGVPQAPLKMV 157

Query: 134 VAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
              +  GT V         P+   F  + + +  ++   +R ++     VS         
Sbjct: 158 GETDQTGTTVRF------WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLK--DKR 209

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             K +     G     +  +       +       + +  +     +   N G     Y 
Sbjct: 210 NDKEDHFHYEGGIKAFVEYLNKNKTPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 268

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 269 FTNNIPQRD 277


>gi|269124013|ref|YP_003306590.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315339|gb|ACZ01713.1| DNA gyrase, B subunit [Streptobacillus moniliformis DSM 12112]
          Length = 660

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
          E+++NS+D   A     +   +     S  +I DNG G+   ++  + +
Sbjct: 42 EIVDNSIDEALAGVCDTITVKMLPD--SEIEIIDNGRGI-PTDMHKSGK 87


>gi|213155387|ref|YP_002317432.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057]
 gi|260558096|ref|ZP_05830307.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|301345942|ref|ZP_07226683.1| DNA gyrase, B subunit [Acinetobacter baumannii AB056]
 gi|301594683|ref|ZP_07239691.1| DNA gyrase, B subunit [Acinetobacter baumannii AB059]
 gi|332873310|ref|ZP_08441265.1| DNA gyrase, B subunit [Acinetobacter baumannii 6014059]
 gi|213054547|gb|ACJ39449.1| DNA gyrase, B subunit [Acinetobacter baumannii AB0057]
 gi|260408450|gb|EEX01757.1| DNA gyrase, B subunit [Acinetobacter baumannii ATCC 19606]
 gi|332738516|gb|EGJ69388.1| DNA gyrase, B subunit [Acinetobacter baumannii 6014059]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|297194586|ref|ZP_06911984.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197722501|gb|EDY66409.1| two-component system sensor kinase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 380

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 19  IIERPSIAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFG 62
           + E  +  +K        A ++R+   +   G     ++ D+G G
Sbjct: 301 VCETVTNVVKH-------AGATRITVTLRRDGPRLALRVEDDGVG 338


>gi|194291902|ref|YP_002007809.1| sensor histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193225806|emb|CAQ71752.1| putative sensor histidine kinase [Cupriavidus taiwanensis LMG
           19424]
          Length = 452

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 29  ELIENSLDAES-----SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           E++ N LD  +     +RV   +    G     + D+G GM  E   +A  R 
Sbjct: 352 EMLGNLLD-NACQWARTRVRVTLREDSGVLEILVEDDGAGMPPEAQALATARF 403


>gi|169794210|ref|YP_001712003.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
          baumannii AYE]
 gi|215481765|ref|YP_002323947.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294]
 gi|301512866|ref|ZP_07238103.1| DNA gyrase, B subunit [Acinetobacter baumannii AB058]
 gi|332854716|ref|ZP_08435503.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013150]
 gi|332865596|ref|ZP_08436436.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013113]
 gi|169147137|emb|CAM84996.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
          baumannii AYE]
 gi|213988939|gb|ACJ59238.1| DNA gyrase, B subunit [Acinetobacter baumannii AB307-0294]
 gi|332727873|gb|EGJ59275.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013150]
 gi|332735248|gb|EGJ66325.1| DNA gyrase, B subunit [Acinetobacter baumannii 6013113]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|188584956|ref|YP_001916501.1| ATP-binding region ATPase domain protein [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179349643|gb|ACB83913.1| ATP-binding region ATPase domain protein [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 116

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 29 ELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMA 71
          ELI NS  A ++ +E+ I     K    + DNG GM+ E++  A
Sbjct: 14 ELITNSFKAGATVLESKIMDEDDKHIVYVKDNGKGMSEEKLEQA 57


>gi|256784495|ref|ZP_05522926.1| hypothetical protein SlivT_08403 [Streptomyces lividans TK24]
 gi|145244338|gb|ABP49149.1| hypothetical protein SLG73 [Streptomyces lividans]
          Length = 576

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 22  RPSIAIKELIENSLDAESSRVET--VIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
             + AI E ++NS++AE++ +    V + G        I DNG G+   ++   +    +
Sbjct: 32  DLTAAIGEPLDNSIEAEATLMRVLPVFSRGKKTIDSMIIADNGIGIDPTQMHHVLSMGYS 91

Query: 78  SKISDDFSNIHTFGFRGEALPSIGAVS---HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
           S+           G  G  L  +  +S    + + S+   N       I  ++I   +  
Sbjct: 92  SRYG----KREGLGRFGVGLK-LAGLSLGERIDIYSKQTGNPKIYHSYIDLQEIRDGKQQ 146

Query: 135 A 135
            
Sbjct: 147 Y 147


>gi|160880126|ref|YP_001559094.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160428792|gb|ABX42355.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 468

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 42  VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +E  +    +    I DNG G+  EE+    +R+ 
Sbjct: 388 IEIKVEKKDRVNIFIIDNGKGIQEEELKHIFERYY 422


>gi|90413277|ref|ZP_01221271.1| putative response regulator [Photobacterium profundum 3TCK]
 gi|90325678|gb|EAS42141.1| putative response regulator [Photobacterium profundum 3TCK]
          Length = 644

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 30  LIENSLDA----ESSRVETVIAGGGKSF---FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+LDA       R++T    G         I DNG G+  E+     + + T+K
Sbjct: 541 LIANALDAVTEPGEIRIKTQFTPGSNKQLMDIVIEDNGKGIPLEQQKKIFELNYTTK 597


>gi|30018763|ref|NP_830394.1| sensory histidine kinase DcuS [Bacillus cereus ATCC 14579]
 gi|229042434|ref|ZP_04190180.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|229108183|ref|ZP_04237805.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229126008|ref|ZP_04255031.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|296501336|ref|YP_003663036.1| sensory histidine kinase DcuS [Bacillus thuringiensis BMB171]
 gi|29894304|gb|AAP07595.1| Two-component sensor kinase yufL [Bacillus cereus ATCC 14579]
 gi|228657433|gb|EEL13248.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228675199|gb|EEL30421.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228726888|gb|EEL78099.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|296322388|gb|ADH05316.1| sensory histidine kinase DcuS [Bacillus thuringiensis BMB171]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       RVE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKRVEVKIQHGDILTITVQDTGKGIQEKEIEQLFTKGYSTK 487


>gi|326507296|dbj|BAJ95725.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 356

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 24/74 (32%)

Query: 26  AIKELIENSLDA---ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           AI EL++N++D     ++ ++      +           DNG GM  E       RHC  
Sbjct: 72  AISELLDNAVDEICNGATFIKVDKSTNVKDNSPMLVF-QDNGGGMDPE-----GVRHC-- 123

Query: 79  KISDDFSNIHTFGF 92
                     + GF
Sbjct: 124 ---------MSLGF 128


>gi|321401274|gb|ADW83048.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401276|gb|ADW83049.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401280|gb|ADW83051.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 83


>gi|258592295|emb|CBE68604.1| putative Sensor protein [NC10 bacterium 'Dutch sediment']
          Length = 480

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFF--QITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+LDA     +  +A    ++    ++ D G G+  E +P       T+K
Sbjct: 383 LLLNALDAMPDGGDVRVAAEAHEALIEVRVEDTGCGIPPESLPRVFDPFFTTK 435


>gi|253565390|ref|ZP_04842845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251945669|gb|EES86076.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 511

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 22  RPSIAIKELIENSLDAESS---RVET--VIAGGGKS-FFQITDNGFGMTSEEIPMAVQRH 75
           R    I+ L++N+  A+ +    ++    ++  G+  +  + D G G+ S++     +R 
Sbjct: 403 RLRQVIEHLLDNA--AKFTVKGHIDIGYALSDHGEKIYVFVADTGCGIPSDQYKKVFERF 460

Query: 76  CTSKISD 82
              KI+ 
Sbjct: 461 Y--KINS 465


>gi|228956995|ref|ZP_04118770.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802626|gb|EEM49468.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       RVE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKRVEVKIQHGDILTITVQDTGKGIQEKEIEQLFTKGYSTK 487


>gi|257053418|ref|YP_003131251.1| histidine kinase [Halorhabdus utahensis DSM 12940]
 gi|256692181|gb|ACV12518.1| histidine kinase [Halorhabdus utahensis DSM 12940]
          Length = 387

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 23  PSIAIKELIENSL---DAESSRVETVIAGGG-KSFFQITDNGFGMTSE 66
            S   + L+ N++   DA+   V   +  G       + DNG G+   
Sbjct: 271 LSSVFRNLVNNAIQHNDADRPSVTVTVEDGDDVVRVTVADNGPGIPEA 318


>gi|209973186|gb|ACJ03856.1| DNA gyrase B subunit [Leptospira interrogans]
          Length = 145

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 19 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 60


>gi|209973184|gb|ACJ03855.1| DNA gyrase B subunit [Leptospira interrogans]
          Length = 145

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 19 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 60


>gi|167747979|ref|ZP_02420106.1| hypothetical protein ANACAC_02711 [Anaerostipes caccae DSM 14662]
 gi|167652629|gb|EDR96758.1| hypothetical protein ANACAC_02711 [Anaerostipes caccae DSM 14662]
          Length = 551

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 30  LIENSL---DAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   D         +      G++   + D+G G+  E+     +R  
Sbjct: 455 LMENAVKYNDRGGH---VFVTAAVMEGRAAVIVEDDGIGIPPEDADRIFERFY 504


>gi|163787773|ref|ZP_02182220.1| sensory box sensor histidine kinase [Flavobacteriales bacterium
           ALC-1]
 gi|159877661|gb|EDP71718.1| sensory box sensor histidine kinase [Flavobacteriales bacterium
           ALC-1]
          Length = 447

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 30  LIENSLDA-----ESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N++DA     ++ +++   +         ++ DNG G+  + +        TSK
Sbjct: 354 LLLNAVDACKHKDDA-QIKVTASQNPNRDIVIKVFDNGSGIPQDILENIFVPFFTSK 409


>gi|154493490|ref|ZP_02032810.1| hypothetical protein PARMER_02829 [Parabacteroides merdae ATCC
           43184]
 gi|154086700|gb|EDN85745.1| hypothetical protein PARMER_02829 [Parabacteroides merdae ATCC
           43184]
          Length = 474

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 24  SIAIKELIENSLD-AESS-RVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTS 78
           +  +  LIEN++  + S   +  V+        +  +TD+G G++++E     ++   S
Sbjct: 370 ANILSNLIENAIKYSGSGVNIRVVVIRN-DKLIELTVTDDGVGISADEQTKVFEKFYRS 427


>gi|157368284|ref|YP_001476273.1| DNA gyrase subunit B [Serratia proteamaculans 568]
 gi|157320048|gb|ABV39145.1| DNA gyrase, B subunit [Serratia proteamaculans 568]
          Length = 804

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++N++D   A   S ++  I     +   + D+G G+      EE   A Q      H
Sbjct: 42  EVVDNAIDEALAGHCSDIQVTIHAD--NSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  D+   + + G  G  +  + A+S  L L+ R          A+   +       
Sbjct: 100 AGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVG 158

Query: 135 AMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
             +  GT V         P+   F  + + E +++   +R ++     VS          
Sbjct: 159 ETDQTGTTVRF------WPSYETFTNNVEFEYDILAKRLRELSFLNSGVSIRLK--DKRT 210

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            K +     G     +  +       +       + +  +     +   N G     Y F
Sbjct: 211 DKEDHFHYEGGIKAFVEYLNKNKTPIHPNVFYFSTMKDDIGVEVALQW-NDGFQENIYCF 269

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 270 TNNIPQRD 277


>gi|108946650|gb|ABG23673.1| gyrase subunit B [Leptospira kirschneri]
          Length = 137

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459502|gb|AAX20087.1| DNA gyrase subunit B [Leptospira interrogans serovar Szwajizak]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 29 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 70


>gi|60459482|gb|AAX20077.1| DNA gyrase subunit B [Leptospira interrogans serovar Medanesis]
          Length = 143

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 29 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 70


>gi|60459484|gb|AAX20078.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459500|gb|AAX20086.1| DNA gyrase subunit B [Leptospira interrogans serovar Kremastos]
          Length = 143

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459506|gb|AAX20089.1| DNA gyrase subunit B [Leptospira interrogans serovar Australis]
          Length = 144

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 30 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 71


>gi|60459478|gb|AAX20075.1| DNA gyrase subunit B [Leptospira interrogans serovar Zanoni]
 gi|160948494|dbj|BAF93858.1| DNA gyrase subunit B [Leptospira interrogans serovar Perameles]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459468|gb|AAX20070.1| DNA gyrase subunit B [Leptospira interrogans serovar Pomona]
          Length = 141

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459504|gb|AAX20088.1| DNA gyrase subunit B [Leptospira interrogans serovar Djasiman]
          Length = 143

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 29 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 70


>gi|60459480|gb|AAX20076.1| DNA gyrase subunit B [Leptospira interrogans serovar Canicola]
          Length = 142

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459496|gb|AAX20084.1| DNA gyrase subunit B [Leptospira interrogans serovar Bataviae]
 gi|60459498|gb|AAX20085.1| DNA gyrase subunit B [Leptospira interrogans serovar
          Hardjo-prajitno]
          Length = 143

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 28 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 69


>gi|60459508|gb|AAX20090.1| DNA gyrase subunit B [Leptospira kirschneri serovar Cynopteri]
          Length = 140

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 26 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 67


>gi|24753767|gb|AAN64015.1|AF434658_12 DNA gyrase subunit B [Leptospira interrogans]
 gi|321401258|gb|ADW83040.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401262|gb|ADW83042.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401266|gb|ADW83044.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401270|gb|ADW83046.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 83


>gi|24212705|ref|NP_710186.1| DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
          56601]
 gi|45655919|ref|YP_000005.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
          str. Fiocruz L1-130]
 gi|24193336|gb|AAN47204.1|AE011192_5 DNA gyrase subunit B [Leptospira interrogans serovar Lai str.
          56601]
 gi|45599152|gb|AAS68642.1| DNA gyrase subunit B [Leptospira interrogans serovar Copenhageni
          str. Fiocruz L1-130]
 gi|321401260|gb|ADW83041.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401264|gb|ADW83043.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401268|gb|ADW83045.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401272|gb|ADW83047.1| DNA gyrase subunit B [Leptospira interrogans]
 gi|321401278|gb|ADW83050.1| DNA gyrase subunit B [Leptospira interrogans]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + ++  I        ++ DNG G+  +
Sbjct: 42 VYEVVDNSVDEAMAGHCTEIKISILPDNI--VEVKDNGRGIPVD 83


>gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 584

 Score = 40.8 bits (94), Expect = 0.60,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 40  SRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHC 76
           SRV+  +A  G ++  ++ D G G+  +++P   +R  
Sbjct: 487 SRVDVTVAESGEQAVVRVKDTGVGIPEKDLPHLFERFY 524


>gi|325475643|gb|EGC78819.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 449

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 32  ENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFG 91
           EN+       +       G     I+DNG G+  + +P   +R        D +++ + G
Sbjct: 354 ENA------HITLSAEYEGSYIISISDNGPGIEEDALPHIFERFY----RGDAAHVRSAG 403

Query: 92  FRGEALP---SIGAV 103
             G  L    SI  V
Sbjct: 404 GAGLGLSIVKSIMQV 418


>gi|317472475|ref|ZP_07931797.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900048|gb|EFV22040.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 551

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 30  LIENSL---DAESSRVETVIAGG---GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN++   D         +      G++   + D+G G+  E+     +R  
Sbjct: 455 LMENAVKYNDRGGH---VFVTAAVMEGRAAVIVEDDGIGIPPEDADRIFERFY 504


>gi|311104578|ref|YP_003977431.1| HAMP domain-containing protein 5 [Achromobacter xylosoxidans A8]
 gi|310759267|gb|ADP14716.1| HAMP domain protein 5 [Achromobacter xylosoxidans A8]
          Length = 489

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 28  KELIENSLDAESS---RVETVIA--GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           K LI+N+L   ++    ++  +     G     ++D G G+       A +R 
Sbjct: 386 KNLIDNALRHGATEDGHIDVRLEPQDDG-WRIAVSDQGPGIPPALANAAFERF 437


>gi|297156705|gb|ADI06417.1| DNA topoisomerase IV subunit B [Streptomyces bingchenggensis
          BCW-1]
          Length = 710

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D A      R+E ++   G    ++ DNG G+  +
Sbjct: 59 EIIDNSVDEALGGYCDRIEVILHDDG--SVEVRDNGRGIPVD 98


>gi|296328806|ref|ZP_06871320.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium
          nucleatum subsp. nucleatum ATCC 23726]
 gi|296154141|gb|EFG94945.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Fusobacterium
          nucleatum subsp. nucleatum ATCC 23726]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    ++E  I    ++  ++ DNG G+ ++
Sbjct: 43 EIVDNSVDEALAGYCDKIEVKILP--ENIIEVMDNGRGIPTD 82


>gi|320115126|ref|YP_004185285.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|319928217|gb|ADV78902.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +++      G  + F + DNG G++ ++IP   +R  
Sbjct: 376 KIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFY 412


>gi|229143301|ref|ZP_04271732.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228640108|gb|EEK96507.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       RVE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKRVEVKIQHGDILTITVQDTGKGIQEKEIEQLFTKGYSTK 487


>gi|237654724|ref|YP_002891038.1| histidine kinase [Thauera sp. MZ1T]
 gi|237625971|gb|ACR02661.1| histidine kinase [Thauera sp. MZ1T]
          Length = 705

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 14/72 (19%)

Query: 13  QIAAGEIIERPSIAIKELIENSLDA-ESSR---VETVIAGGGKS-FFQITDNGFGMTSEE 67
           QI   ++I         +++N+ DA  +     +  +    G+S      DNG G   E 
Sbjct: 597 QIR--QVIHN-------MLQNAQDALGAQEDAEISVITRRDGESALLLCRDNGPGFPPEV 647

Query: 68  IPMAVQRHCTSK 79
           +  A + + T+K
Sbjct: 648 LARAFEPYFTTK 659


>gi|222635584|gb|EEE65716.1| hypothetical protein OsJ_21353 [Oryza sativa Japonica Group]
          Length = 1112

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 17/62 (27%)

Query: 26  AIKELIENSLDA---ESSRVETV------IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           AI EL++N++D     ++ V+        I         I D+G GM+ E +     RHC
Sbjct: 275 AIAELLDNAVDEVNNGATFVKIDKIKCSLIDEYSL---VIQDDGGGMSPESL-----RHC 326

Query: 77  TS 78
            S
Sbjct: 327 MS 328


>gi|210614352|ref|ZP_03290171.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
 gi|210150696|gb|EEA81705.1| hypothetical protein CLONEX_02385 [Clostridium nexile DSM 1787]
          Length = 638

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++N++D   A     +   I     +   + DNG G+ 
Sbjct: 39 VYEIVDNAVDEALAGYCDTIFVSINED--NSITVIDNGRGIP 78


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 16/82 (19%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVETVIAG--------GGKSFFQIT 57
           L E ++N   A +       A+  +I N+LDA       V+           G     + 
Sbjct: 737 LPEVLVN---ASQ----LESALLNVIGNALDASPHGSAVVVEARPRPRGDIHGVE-IDVH 788

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           D+G G+ +E++    +   T+K
Sbjct: 789 DHGCGIRAEDLSRIFEPFFTTK 810


>gi|19705416|ref|NP_602911.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|19713409|gb|AAL94210.1| DNA gyrase subunit B [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
          Length = 639

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A    ++E  I    ++  ++ DNG G+ ++
Sbjct: 43 EIVDNSVDEALAGYCDKIEVKILP--ENIIEVMDNGRGIPTD 82


>gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51]
 gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 560

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDAESS----RVETVIAGGGKS---FFQITD 58
           L  ++ + + A    E+    I+ L+ N++  + +    RVE  +    +      ++ D
Sbjct: 426 LDPEV-SLLRADP--EKLRRVIENLVGNAI--KFTPPEGRVEIQVKNAPRDNWLMIRVID 480

Query: 59  NGFGMTSEEIPMAVQRHC 76
            G G+  EE     +R  
Sbjct: 481 TGIGIPPEEQEEIFERFT 498


>gi|21672304|ref|NP_660371.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|22654250|sp|P29435|GYRB_BUCAP RecName: Full=DNA gyrase subunit B
 gi|21622902|gb|AAM67582.1| DNA gyrase subunit B [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 84/248 (33%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     ++ VI     +   I D+G G+      EE   A +      H
Sbjct: 42  EIVDNSIDEALAGFCKEIKVVIHSD--NSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  +    I + G  G  +  + A+S  L L+          +     +  +   P+
Sbjct: 100 SGGKFDNASYKI-SGGLHGVGISVVNALSEKLELI----IYKNKKKYRQQYKNGNPESPL 154

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
            +   T +    + F  P+   F    Q +  +++  +R ++     +      +K NR 
Sbjct: 155 CIIGATEITGTYIRF-WPSYKIFTNKTQFQYEILSKRLRELSFLNSNI---LIHLKDNRT 210

Query: 195 KMNFQSTN-GNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            +  +    G     I  +    F  N      +  +  ++    I   N    N    F
Sbjct: 211 NLEEKYHYKGGIKAFIKFLNKNKFPINLNIFYFRCIKNQIELEIAIQWNNSHQEN-ILCF 269

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 270 TNNIPQKD 277


>gi|330961441|gb|EGH61701.1| sensor histidine kinase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 357

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSLDA-------ESS-RVETVIAGGGKSFFQIT 57
           L   + +++   +++         L+ N +DA       ++   +      GG+  F ++
Sbjct: 238 LPPLLADRVQIQQVLLN-------LMLNGVDAMKKVEPDQAQLEIRVDWRDGGEIGFAVS 290

Query: 58  DNGFGMTSEEIPMAVQRHCTSK 79
           DNG G+  E          T+K
Sbjct: 291 DNGIGVQPENTHRLFDAFYTTK 312


>gi|291561640|emb|CBL40439.1| DNA gyrase subunit B [butyrate-producing bacterium SS3/4]
          Length = 636

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     ++  I     +   + D+G G+  +
Sbjct: 39 VYEIVDNAVDEALAGYCDTIDVQINSD--NSITVVDDGRGIPVD 80


>gi|291612484|ref|YP_003522641.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291582596|gb|ADE10254.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 712

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 21  ERPSIAIKELIENSLDA-ESSR---VETVIAG---GGKSFFQITDNGFGMTSEEIPMAVQ 73
            R    I  L++N+ DA + +    +         G      + DNG G+    +    +
Sbjct: 600 TRLRQVIHNLLQNAHDALQQTEHPMIVLSTENTTNGTLKLI-VRDNGSGIPEHMLGRLFE 658

Query: 74  RHCTSK 79
            + T+K
Sbjct: 659 PYMTTK 664


>gi|241764343|ref|ZP_04762371.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax delafieldii 2AN]
 gi|241366299|gb|EER60842.1| DNA topoisomerase (ATP-hydrolyzing) [Acidovorax delafieldii 2AN]
          Length = 703

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 21  ERPSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEE----I 68
           + P   I+E+++N+ D   A    +++  +   G     + D+G G+      EE    I
Sbjct: 81  DNPLHIIQEVLDNAADEALAGFGKKIKVTLHQDG--SVSVEDDGRGIPFGLHPEEKAPVI 138

Query: 69  PMAVQR-HC 76
            +   R H 
Sbjct: 139 ELVFTRLHA 147


>gi|239907202|ref|YP_002953943.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239797068|dbj|BAH76057.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 677

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 10/48 (20%)

Query: 26  AIKELIENSL-------DAESSRVETVIAGGG-KSFFQITDNGFGMTS 65
            + EL+ N++       D  +  +   +   G  +   + D+G G+  
Sbjct: 584 VVNELLTNAVKHGLASRDTGA--IRVRLERDGVLAHITVEDDGAGLPP 629


>gi|283797565|ref|ZP_06346718.1| putative sensor histidine kinase [Clostridium sp. M62/1]
 gi|291074936|gb|EFE12300.1| putative sensor histidine kinase [Clostridium sp. M62/1]
          Length = 438

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 25  IAIKELIENSLDA---ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
             +K L+ N+++A    S   E  I     G +  F++ D+G G+++  +P   Q   ++
Sbjct: 325 AVLKNLVNNAIEAIESGSRSGEVKILERKSGDRYLFEVADDGPGISARHLPNIFQMGYST 384

Query: 79  KI 80
           K 
Sbjct: 385 KF 386


>gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group]
          Length = 766

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 26  AIKELIENSLDAESSRVETVIA-------GGGKSFFQITDNGFGMT 64
           AI ELI+NS DA++SR+   +                + D+G GMT
Sbjct: 244 AIAELIDNSRDADASRLNISVKSLFSKKADKKIPVLSVIDDGAGMT 289


>gi|193075924|gb|ABO10501.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|126640119|ref|YP_001083103.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 784

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 18 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 57


>gi|75909732|ref|YP_324028.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75703457|gb|ABA23133.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 34/94 (36%)

Query: 20  IERPSIAIKE--------------------LIENSLDA--ESSR------------VETV 45
           I  P   IKE                    L+ N++DA  ES+             + T 
Sbjct: 315 ITHPINVIKEYENLPLVDCYAGLLNQVFMNLLSNAIDALEESTVKYPGMVTKPQIIIRTE 374

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I G  +   +I DNG G+  E          T+K
Sbjct: 375 IIGDQQVVIRIADNGIGIPEEAKQRLFDPFFTTK 408


>gi|327404490|ref|YP_004345328.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823]
 gi|327319998|gb|AEA44490.1| DNA gyrase subunit B [Fluviicola taffensis DSM 16823]
          Length = 650

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A     +   I     +   + DNG G+ 
Sbjct: 44 VYEVVDNSIDEALAGHCDTIGVWINED--NSITVKDNGRGIP 83


>gi|303250254|ref|ZP_07336454.1| nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252019|ref|ZP_07533919.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650870|gb|EFL81026.1| nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860488|gb|EFM92501.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 571

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 2   KIR-----KLSEKIINQI-AAGEIIERPSIAIKELIENSLD-AESSRVETVIAGG--GKS 52
           +IR     +L+ K+ +QI +A + +      ++E + N++  A +S ++ +      G+ 
Sbjct: 454 RIRTSAQIRLNCKLPSQIFSAQQQVHAL-QIVREAVINAIKHANASEIDVIAETNTDGEH 512

Query: 53  FFQITDNGFGMTSE 66
              I DNG G+ S+
Sbjct: 513 CLIIRDNGKGIASD 526


>gi|299542069|ref|ZP_07052385.1| histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298725384|gb|EFI66032.1| histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 42  VETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           +   I      +   + DNG G++  +I +  +   T+K + D
Sbjct: 329 ISIAIERQEDNTVITVCDNGQGISQADISVIFEPGYTTKFNVD 371


>gi|259046724|ref|ZP_05737125.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC
          49175]
 gi|259036620|gb|EEW37875.1| DNA topoisomerase IV, B subunit [Granulicatella adiacens ATCC
          49175]
          Length = 686

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   +  ++++E  I         + DNG GM 
Sbjct: 44 EIVDNAVDEALSGYATKIEVTIHKD--QSLSVKDNGRGMP 81


>gi|229592340|ref|YP_002874459.1| putative two-component system sensor histidine kinase protein
           [Pseudomonas fluorescens SBW25]
 gi|229364206|emb|CAY51882.1| putative two-component system, sensor histidine kinase protein
           [Pseudomonas fluorescens SBW25]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 22  RPSIAIKELIENSLDAES----SRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R    +  L+ N+LDA +     R+E  + A        ++D+G G+  + +        
Sbjct: 477 RLEQVLINLLRNALDAMADKPRKRLEIRLHADQQLWQLTVSDSGGGIADDHLNSVFDPFF 536

Query: 77  TSK 79
           T+K
Sbjct: 537 TTK 539


>gi|256396505|ref|YP_003118069.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256362731|gb|ACU76228.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 524

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 16/66 (24%)

Query: 22  RPSI---AIKELIENSLDAESS------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAV 72
            P+    A+  L++N+    +        V   ++ G     Q+ D G G+  E++P   
Sbjct: 404 DPATLERAVTNLLDNA----AKWSPENGTVTVRLSDG---LLQVADEGPGIAEEDLPHVF 456

Query: 73  QRHCTS 78
           +R   S
Sbjct: 457 ERFYRS 462


>gi|228951953|ref|ZP_04114051.1| hypothetical protein bthur0006_13670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229069129|ref|ZP_04202421.1| hypothetical protein bcere0025_13360 [Bacillus cereus F65185]
 gi|229078759|ref|ZP_04211313.1| hypothetical protein bcere0023_14220 [Bacillus cereus Rock4-2]
 gi|228704632|gb|EEL57064.1| hypothetical protein bcere0023_14220 [Bacillus cereus Rock4-2]
 gi|228714074|gb|EEL65957.1| hypothetical protein bcere0025_13360 [Bacillus cereus F65185]
 gi|228807876|gb|EEM54397.1| hypothetical protein bthur0006_13670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 591

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)

Query: 30  LIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N++   +A     +       G   F++ D+G G+  E+IP    R  
Sbjct: 489 LIDNAIRHTNAGGHVTLVIDTKNNGL-IFEVQDSGVGIPEEDIPFLFDRFY 538


>gi|242279336|ref|YP_002991465.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122230|gb|ACS79926.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 560

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 25  IAIKELIENSLDA----ESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
             +  L+EN++DA     S  ++      G     +I D+G G+  E +        T+K
Sbjct: 447 QVVLNLMENAIDAVGNDGS--IKLSTRSNGDFVELEIADSGPGIPPELLSKVFDPFFTTK 504


>gi|188583048|ref|YP_001926493.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179346546|gb|ACB81958.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 12/67 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSL-DAESSRVETVIAGG--GKSFFQITDNGFG 62
           L  +    I            ++E + N++  A++  VE V+A G  G+    +TD+G G
Sbjct: 367 LPAETAAHI---------YRIVQEGLNNAVRHAQARSVEVVLAAGPTGEVLLTVTDDGRG 417

Query: 63  MTSEEIP 69
            T E++ 
Sbjct: 418 ATPEDLR 424


>gi|116626897|ref|YP_829053.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116230059|gb|ABJ88768.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 578

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 26  AIKELIENSLDA---ESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            ++ LI N++DA     + +        G+   +I+D G G+T EE       + T+K
Sbjct: 484 VLRNLILNAIDAMPEGGT-LTVRTKALDGRMRLEISDTGQGLTPEECDRLFTPYYTTK 540


>gi|84684207|ref|ZP_01012109.1| two-component sensor histidine kinase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667960|gb|EAQ14428.1| two-component sensor histidine kinase [Rhodobacterales bacterium
           HTCC2654]
          Length = 730

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 6   LSEKIINQIAAGEIIERPSIAIKELIENSL-DAESSRVETVIA-GGGKSFFQITDNGFGM 63
           LS +I + +            ++E + N++  A +  V        G     +TD+G G 
Sbjct: 617 LSPRIAHALR---------SVLRECVNNAIRHAGAREVGVGFDVQKGHVRITVTDDGRGF 667

Query: 64  TSE 66
              
Sbjct: 668 DPN 670


>gi|307105660|gb|EFN53908.1| hypothetical protein CHLNCDRAFT_48978 [Chlorella variabilis]
          Length = 663

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  ++ V   +      +  I+DNG G+ ++
Sbjct: 54 VYEILDNAIDEVQAGFATEVHVELNLD-TGWVTISDNGRGIPTD 96


>gi|299139819|ref|ZP_07032991.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298598173|gb|EFI54339.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 511

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA---ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L+ N+L+A    S  +       GG +   ++D G G+    +    +   T+K
Sbjct: 404 LVGNALEAMEGRSGSITVRARLAGGFAAVTVSDTGHGIDQANLQAIFEPFFTTK 457


>gi|283768639|ref|ZP_06341551.1| DNA gyrase, B subunit [Bulleidia extructa W1219]
 gi|283105031|gb|EFC06403.1| DNA gyrase, B subunit [Bulleidia extructa W1219]
          Length = 659

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 11/54 (20%)

Query: 20  IERPSIA-----IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
           I   S       + E+++N +D   A  +S+VE  +         + D+G GM 
Sbjct: 49  IGSTSSVGLHHLVWEIVDNGIDEAMAGYASQVEITVDEDNI--VSVEDDGRGMP 100


>gi|282889887|ref|ZP_06298425.1| hypothetical protein pah_c005o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500210|gb|EFB42491.1| hypothetical protein pah_c005o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 587

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 7/53 (13%)

Query: 30  LIENSLDA----ESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           L+EN+  A      +++   +      +   I+D G G+  +++    +R  T
Sbjct: 482 LLENA--AKYSKGPAKITITLAKEDNMAKLTISDKGIGIPQQDLEHIFERFYT 532


>gi|269791748|ref|YP_003316652.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM
          6589]
 gi|269099383|gb|ACZ18370.1| DNA gyrase, B subunit [Thermanaerovibrio acidaminovorans DSM
          6589]
          Length = 636

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     V+  +   G     + DNG G+ +E
Sbjct: 42 VYEVVDNAIDEAMAGFCDTVQVTVHPDG--SVSVEDNGRGIPTE 83


>gi|227819594|ref|YP_002823565.1| HSP90 family heat shock protein [Sinorhizobium fredii NGR234]
 gi|227338593|gb|ACP22812.1| chaperone protein HtpG [Sinorhizobium fredii NGR234]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 39/131 (29%)

Query: 27  IKELIENSLDAE------------------SSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
           ++ELI N+ DA                   + R+   +         + DNG GM+ +E+
Sbjct: 36  LRELISNAADACEKLRYEAIVAPQLLGSDPAPRITLTLDEENARLI-VEDNGIGMSRDEL 94

Query: 69  PMAV---QRHCTSKISDDFSN---------IHTF--GFRGEALPSIGAVSH-LTLMSRPP 113
             ++    R  T    +             I  F  GF      S   V+  + ++SR  
Sbjct: 95  VESLGTIARSGTRAFMERIEAAQGKDGAQLIGQFGVGF-----YSAFMVADNVDVVSRRA 149

Query: 114 QNNTGAQIAIS 124
            ++T    A  
Sbjct: 150 GSDTAWHWASD 160


>gi|225405646|ref|ZP_03760835.1| hypothetical protein CLOSTASPAR_04867 [Clostridium asparagiforme
          DSM 15981]
 gi|225042840|gb|EEG53086.1| hypothetical protein CLOSTASPAR_04867 [Clostridium asparagiforme
          DSM 15981]
          Length = 185

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 32 ENSLDAESSRVETVIA----GGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
          ENS  A +S V   +         +   I D+G GMT E++   +    T
Sbjct: 14 ENSTRAGASLVTIEVNVSHPDDTLT-VVIKDDGCGMTEEQVQRVIDPFFT 62


>gi|254478799|ref|ZP_05092166.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035254|gb|EEB75961.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 451

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +++      G  + F + DNG G++ ++IP   +R  
Sbjct: 366 KIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFY 402


>gi|188589936|ref|YP_001919845.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500217|gb|ACD53353.1| alkaline phosphatase synthesis sensor protein PhoR [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 465

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMA---VQRHCTSK 79
            V  +   G       + DNG G++  ++P       +   SK
Sbjct: 378 NVNVIFNEGEDDLKIVVEDNGCGISKSDLPRVKEKFYKGANSK 420


>gi|163744439|ref|ZP_02151799.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
 gi|161381257|gb|EDQ05666.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
           [Oceanibulbus indolifex HEL-45]
          Length = 506

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 30  LIENSLD-AESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQ 73
           L+ N+L  + +S +       G++   +I DNG GM  E++    Q
Sbjct: 395 LLGNALKFSSASNIRMRAKMIGETCRLEIEDNGCGMPKEDLERIFQ 440


>gi|157964719|ref|YP_001499543.1| DNA gyrase subunit B [Rickettsia massiliae MTU5]
 gi|157844495|gb|ABV84996.1| DNA gyrase subunit B [Rickettsia massiliae MTU5]
          Length = 808

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   + V   +   G     ++DNG G+  E
Sbjct: 53 EVVDNAIDESLAGYCNLVRVTLNKNG--SVTVSDNGRGIPVE 92


>gi|119357598|ref|YP_912242.1| integral membrane sensor hybrid histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354947|gb|ABL65818.1| integral membrane sensor hybrid histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 699

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 30  LIENSL-------DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCTS 78
           L+ N+L       D    R++  +  G   +   + D G G+  E +        TS
Sbjct: 325 LVMNALYFLRSFPD---GRIDIRLKRGEILNSVTVRDTGPGVAKENLAKLFDPFYTS 378


>gi|15596995|ref|NP_250489.1| two-component sensor, ParS [Pseudomonas aeruginosa PAO1]
 gi|9947781|gb|AAG05187.1|AE004606_1 two-component sensor, ParS [Pseudomonas aeruginosa PAO1]
          Length = 428

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 24  SIAIKELIENSLDAES-SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           + A+  L+ N++   + SRVE  +   G S   ++ D+G G+ ++      +    S++ 
Sbjct: 324 ARAVINLLRNAI-RHAHSRVEIALLDQGDSCQIRVNDDGPGIPADARQKIFEPF--SRL- 379

Query: 82  DDFSNIHTFGF 92
           DD  +  T GF
Sbjct: 380 DDSRDRSTGGF 390


>gi|27544672|dbj|BAC55031.1| DNA gyrase B subunit [Legionella spiritensis]
          Length = 300

 Score = 40.8 bits (94), Expect = 0.62,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +  +I         + D+G G+  +
Sbjct: 14 EVVDNAIDEALAGHCKEINVIIHVD--ESITVKDDGRGIPVD 53


>gi|323705322|ref|ZP_08116897.1| putative anti-sigma regulatory factor, serine/threonine protein
           kinase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535224|gb|EGB25000.1| putative anti-sigma regulatory factor, serine/threonine protein
           kinase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 143

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 29/99 (29%)

Query: 5   KLSEKIINQIAAGEIIERPSIAIKELIENSLDAESSRVE--------TVIA---GGGKSF 53
           +L   +       E I     A+ E + NS+      +          ++     G K  
Sbjct: 31  QLDPTV-------EEIADIKTAVSEAVTNSI------IHGYEGKIDYIMLKAEIEGNKLT 77

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGF 92
            ++ DNG G+  E+I  A++   T+K  +D S     GF
Sbjct: 78  VEVIDNGVGI--EDIEKAMEPLYTTKPDEDRSG---MGF 111


>gi|307722076|ref|YP_003893216.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306980169|gb|ADN10204.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 401

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 31  IENSLDA------ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSK 79
           ++NS+DA      ++ ++  ++    +S    I DN  G+  + +    + + ++K
Sbjct: 303 LKNSIDAFKENNIKNKKISVIVVNNKESVLITIEDNAGGIRIDNLQKVFEPYFSTK 358


>gi|304412708|ref|ZP_07394311.1| DNA gyrase, B subunit [Shewanella baltica OS183]
 gi|307305827|ref|ZP_07585573.1| DNA gyrase, B subunit [Shewanella baltica BA175]
 gi|304348918|gb|EFM13333.1| DNA gyrase, B subunit [Shewanella baltica OS183]
 gi|306911320|gb|EFN41746.1| DNA gyrase, B subunit [Shewanella baltica BA175]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCSDITITIHVDG--SVSVKDDGRGIP 80


>gi|304413083|ref|ZP_07394556.1| Signal transduction histidine kinase [Candidatus Regiella
           insecticola LSR1]
 gi|304283926|gb|EFL92319.1| Signal transduction histidine kinase [Candidatus Regiella
           insecticola LSR1]
          Length = 426

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 23  PSIAIKELIENSLD---AESSRVET--VIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            S AI  L+ N+++   A  +++E    +   G  F QI DNG G+ +E +P   +R  
Sbjct: 323 LSSAISNLVYNAINHTPAG-TKIEIHWQLTSQGAQF-QINDNGRGIAAEHLPRLTERFY 379


>gi|291280736|ref|YP_003497570.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans
          SSM1]
 gi|290755438|dbj|BAI81814.1| DNA topoisomerase II, B subunit [Deferribacter desulfuricans
          SSM1]
          Length = 643

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 8/41 (19%)

Query: 29 ELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +E  +          + DNG G+ 
Sbjct: 42 EVVDNSIDEATAGYCSEIEITLHKDY---SVTVKDNGRGIP 79


>gi|260553769|ref|ZP_05826039.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260405073|gb|EEW98573.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|257093340|ref|YP_003166981.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045864|gb|ACV35052.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 527

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 41  RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           RV T +   G+    + D+G G+T E +    +   TSK
Sbjct: 443 RVSTHLESAGRVCITVEDSGPGVTEEMVEHLFEAFHTSK 481


>gi|229087941|ref|ZP_04220052.1| C4-dicarboxylate sensor kinase [Bacillus cereus Rock3-44]
 gi|228695409|gb|EEL48283.1| C4-dicarboxylate sensor kinase [Bacillus cereus Rock3-44]
          Length = 395

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 30  LIENSL------DAESSRVETVIAGGG-KSFFQITDNGFGMTSEEIPMAVQRHCT 77
           LIEN+       D E+ R++  I          I DNG G+  E +    ++  T
Sbjct: 289 LIENAFGSFEQTDIENKRIDISIEQSEDVCAILIEDNGCGIKEEHLSRVYEKGFT 343


>gi|217968468|ref|YP_002353702.1| DNA gyrase subunit B [Thauera sp. MZ1T]
 gi|217505795|gb|ACK52806.1| DNA gyrase, B subunit [Thauera sp. MZ1T]
          Length = 833

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I     +   +TDNG G+ 
Sbjct: 55 EVVDNSIDEALAGHCDDIVITIHAD--NSISVTDNGRGIP 92


>gi|212659914|gb|ACJ37013.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 4  EVVDNSVDEALAGHADSILVKIHVDG--SVSVSDNGRGIPVD 43


>gi|212659912|gb|ACJ37012.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 1  EVVDNSVDEALAGHADSILVKIHVDG--SVSVSDNGRGIPVD 40


>gi|212659907|gb|ACJ37010.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 271

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 6  EVVDNSVDEALAGHADSILVKIHVDG--SVSVSDNGRGIPVD 45


>gi|160937497|ref|ZP_02084858.1| hypothetical protein CLOBOL_02388 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439566|gb|EDP17316.1| hypothetical protein CLOBOL_02388 [Clostridium bolteae ATCC
           BAA-613]
          Length = 607

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 30  LIENSLDAESS------RVETVI--AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           L+EN++            +   I    GG+   Q+ DNG G+ +  +      H   KI
Sbjct: 491 LVENAVYHGIKPMGGNGHIRIWIGPEEGGRMKIQVRDNGVGIDASALSKLQDYH---KI 546


>gi|152993951|ref|YP_001359672.1| hypothetical protein SUN_2379 [Sulfurovum sp. NBC37-1]
 gi|151425812|dbj|BAF73315.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 559

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 41  RVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            +E  I   G +   +I+DN  G+  + I    + + TSK
Sbjct: 474 TIEIKIFYEGNRGIIRISDNAGGIDIDMINKVFEPYVTSK 513


>gi|152998559|ref|YP_001364240.1| DNA gyrase subunit B [Shewanella baltica OS185]
 gi|160873130|ref|YP_001552446.1| DNA gyrase subunit B [Shewanella baltica OS195]
 gi|217971220|ref|YP_002355971.1| DNA gyrase subunit B [Shewanella baltica OS223]
 gi|151363177|gb|ABS06177.1| DNA gyrase, B subunit [Shewanella baltica OS185]
 gi|160858652|gb|ABX47186.1| DNA gyrase, B subunit [Shewanella baltica OS195]
 gi|217496355|gb|ACK44548.1| DNA gyrase, B subunit [Shewanella baltica OS223]
 gi|315265355|gb|ADT92208.1| DNA gyrase, B subunit [Shewanella baltica OS678]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCSDITITIHVDG--SVSVKDDGRGIP 80


>gi|62860912|gb|AAY16575.1| MhaS [Pseudomonas putida]
          Length = 991

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 21  ERPSIAIKELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R +  +  L+ N+ DA     + RV + ++        + D G G+    +    +   
Sbjct: 869 QRLAQVLINLLSNARDASPPGSAVRVRSEVSEHTVDLI-VEDEGSGIPKNIMDRLFEPFF 927

Query: 77  TSK 79
           T+K
Sbjct: 928 TTK 930


>gi|45443521|ref|NP_995060.1| hypothetical protein YP_3789 [Yersinia pestis biovar Microtus
          str. 91001]
 gi|145600493|ref|YP_001164569.1| hypothetical protein YPDSF_3239 [Yersinia pestis Pestoides F]
 gi|162420877|ref|YP_001605784.1| hypothetical protein YpAngola_A1243 [Yersinia pestis Angola]
 gi|229837034|ref|ZP_04457199.1| DNA mismatch repair enzyme [Yersinia pestis Pestoides A]
 gi|45438390|gb|AAS63937.1| DNA mismatch repair enzyme (predicted ATPase) [Yersinia pestis
          biovar Microtus str. 91001]
 gi|145212189|gb|ABP41596.1| hypothetical protein YPDSF_3239 [Yersinia pestis Pestoides F]
 gi|162353692|gb|ABX87640.1| DNA mismatch repair enzyme [Yersinia pestis Angola]
 gi|229705977|gb|EEO91986.1| DNA mismatch repair enzyme [Yersinia pestis Pestoides A]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 8  EKIINQIAAGEIIERPSI--AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
          E++  +I        PS   A+ EL++NS DA S  V   +         I+D G GM+ 
Sbjct: 14 EELSQKI--------PSSLFALNELVKNSYDAFSPDVTITVIPSELKII-ISDYGNGMSV 64

Query: 66 EEIPMAVQRHCTSK 79
          +EI         SK
Sbjct: 65 DEIHSLF---HISK 75


>gi|15836610|ref|NP_297298.1| DNA gyrase subunit B [Xylella fastidiosa 9a5c]
 gi|9104765|gb|AAF82818.1|AE003855_5 DNA gyrase subunit B [Xylella fastidiosa 9a5c]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 53 EVVDNSVDEALAGHADSILVKIHVDG--SVSVSDNGRGIPVD 92


>gi|83280994|dbj|BAE53571.1| gyrase beta subunit [Thermoplasma acidophilum]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   SR+  V+   G     + D+G G+  +
Sbjct: 40 VYEVVDNSVDESVAGYCSRIYVVMGSDG--SITVEDDGRGIPVD 81


>gi|22127662|ref|NP_671085.1| hypothetical protein y3791 [Yersinia pestis KIM 10]
 gi|108809882|ref|YP_653798.1| hypothetical protein YPA_3892 [Yersinia pestis Antiqua]
 gi|108810429|ref|YP_646196.1| hypothetical protein YPN_0263 [Yersinia pestis Nepal516]
 gi|150260565|ref|ZP_01917293.1| hypothetical protein YPE_2877 [Yersinia pestis CA88-4125]
 gi|165927293|ref|ZP_02223125.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165936424|ref|ZP_02224992.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|166008913|ref|ZP_02229811.1| DNA mismatch repair enzyme [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166211933|ref|ZP_02237968.1| DNA mismatch repair enzyme [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167400522|ref|ZP_02306031.1| DNA mismatch repair enzyme [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167419396|ref|ZP_02311149.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167426097|ref|ZP_02317850.1| DNA mismatch repair enzyme [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|167467846|ref|ZP_02332550.1| hypothetical protein YpesF_08094 [Yersinia pestis FV-1]
 gi|218927594|ref|YP_002345469.1| hypothetical protein YPO0392 [Yersinia pestis CO92]
 gi|229840268|ref|ZP_04460427.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|229842346|ref|ZP_04462501.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229900611|ref|ZP_04515735.1| DNA mismatch repair enzyme [Yersinia pestis Nepal516]
 gi|270488028|ref|ZP_06205102.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294502497|ref|YP_003566559.1| hypothetical protein YPZ3_0387 [Yersinia pestis Z176003]
 gi|21960777|gb|AAM87336.1|AE013982_3 hypothetical [Yersinia pestis KIM 10]
 gi|108774077|gb|ABG16596.1| hypothetical protein YPN_0263 [Yersinia pestis Nepal516]
 gi|108781795|gb|ABG15853.1| hypothetical protein YPA_3892 [Yersinia pestis Antiqua]
 gi|115346205|emb|CAL19073.1| hypothetical protein YPO0392 [Yersinia pestis CO92]
 gi|149289973|gb|EDM40050.1| hypothetical protein YPE_2877 [Yersinia pestis CA88-4125]
 gi|165915540|gb|EDR34149.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|165920755|gb|EDR38003.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. F1991016]
 gi|165992252|gb|EDR44553.1| DNA mismatch repair enzyme [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166206679|gb|EDR51159.1| DNA mismatch repair enzyme [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166963390|gb|EDR59411.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. MG05-1020]
 gi|167049890|gb|EDR61298.1| DNA mismatch repair enzyme [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167055020|gb|EDR64820.1| DNA mismatch repair enzyme [Yersinia pestis biovar Mediaevalis
          str. K1973002]
 gi|229681950|gb|EEO78042.1| DNA mismatch repair enzyme [Yersinia pestis Nepal516]
 gi|229690656|gb|EEO82710.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. India 195]
 gi|229696634|gb|EEO86681.1| DNA mismatch repair enzyme [Yersinia pestis biovar Orientalis
          str. PEXU2]
 gi|262360528|gb|ACY57249.1| hypothetical protein YPD4_0340 [Yersinia pestis D106004]
 gi|262364474|gb|ACY61031.1| hypothetical protein YPD8_0341 [Yersinia pestis D182038]
 gi|270336532|gb|EFA47309.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294352956|gb|ADE63297.1| hypothetical protein YPZ3_0387 [Yersinia pestis Z176003]
 gi|320017051|gb|ADW00623.1| DNA mismatch repair enzyme [Yersinia pestis biovar Medievalis
          str. Harbin 35]
          Length = 240

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 8  EKIINQIAAGEIIERPSI--AIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTS 65
          E++  +I        PS   A+ EL++NS DA S  V   +         I+D G GM+ 
Sbjct: 14 EELSQKI--------PSSLFALNELVKNSYDAFSPDVTITVIPSELKII-ISDYGNGMSV 64

Query: 66 EEIPMAVQRHCTSK 79
          +EI         SK
Sbjct: 65 DEIHSLF---HISK 75


>gi|16082085|ref|NP_394515.1| DNA gyrase subunit B [Thermoplasma acidophilum DSM 1728]
 gi|10640369|emb|CAC12183.1| probable DNA gyrase, subunit B (gyrB) [Thermoplasma acidophilum]
          Length = 641

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   SR+  V+   G     + D+G G+  +
Sbjct: 40 VYEVVDNSVDESVAGYCSRIYVVMGSDG--SITVEDDGRGIPVD 81


>gi|120596837|ref|YP_961411.1| DNA gyrase subunit B [Shewanella sp. W3-18-1]
 gi|146291115|ref|YP_001181539.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32]
 gi|120556930|gb|ABM22857.1| DNA gyrase subunit B [Shewanella sp. W3-18-1]
 gi|145562805|gb|ABP73740.1| DNA gyrase subunit B [Shewanella putrefaciens CN-32]
 gi|319424421|gb|ADV52495.1| DNA gyrase, B subunit [Shewanella putrefaciens 200]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCSDITITIHVDG--SVSVKDDGRGIP 80


>gi|126172261|ref|YP_001048410.1| DNA gyrase subunit B [Shewanella baltica OS155]
 gi|125995466|gb|ABN59541.1| DNA gyrase subunit B [Shewanella baltica OS155]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A   S +   I   G     + D+G G+ 
Sbjct: 43 EVVDNSIDEALAGHCSDITITIHVDG--SVSVKDDGRGIP 80


>gi|71275531|ref|ZP_00651817.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon]
 gi|71900178|ref|ZP_00682318.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|170729255|ref|YP_001774688.1| DNA gyrase subunit B [Xylella fastidiosa M12]
 gi|71163831|gb|EAO13547.1| DNA gyrase, B subunit [Xylella fastidiosa Dixon]
 gi|71730067|gb|EAO32158.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|167964048|gb|ACA11058.1| DNA topoisomerase (ATP-hydrolyzing) [Xylella fastidiosa M12]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 53 EVVDNSVDEALAGHADSILVKIHVDG--SVSVSDNGRGIPVD 92


>gi|302186340|ref|ZP_07263013.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae 642]
          Length = 1003

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 15  AAGEII----ERPSIAIKELIENSLDAESS----RVETV-IAGGGKSFFQITDNGFGMTS 65
           A G +I    ER    +  L+ N++  + +    R+    +A   +  F ++D+G G+  
Sbjct: 650 AQGLVIDADPERIFQVLSNLVGNAI--KFTPKGGRINIDAVADQNEVLFSVSDDGIGIPV 707

Query: 66  EEIPMAVQRHCTSK 79
           E +P   QR+ + K
Sbjct: 708 EHLPFIFQRYWSVK 721


>gi|299542040|ref|ZP_07052359.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298725463|gb|EFI66108.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 472

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 30  LIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+ N+ D     V   +     +   I+DNG G+  E++    +R+ 
Sbjct: 372 LLHNAPD---VSVHVSVDEHTLT---ISDNGKGIAPEDLEHIFERYY 412


>gi|294788048|ref|ZP_06753292.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453]
 gi|294484341|gb|EFG32024.1| DNA topoisomerase IV, B subunit [Simonsiella muelleri ATCC 29453]
          Length = 657

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 21 ERPSIAIKELIENSLD-A--E-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + P+   +E+I+N+ D A    +++++  I   G     + DNG G+ 
Sbjct: 31 DSPTHICQEVIDNAADEALGGFATQIDVKIQSDG--SLCVRDNGRGIP 76


>gi|240103482|ref|YP_002959791.1| DNA topoisomerase VI subunit B [Thermococcus gammatolerans EJ3]
 gi|259534016|sp|C5A6R5|TOP6B_THEGJ RecName: Full=Type 2 DNA topoisomerase 6 subunit B; AltName:
          Full=Type II DNA topoisomerase VI subunit B;
          Short=TopoVI-B
 gi|239911036|gb|ACS33927.1| Type II DNA topoisomerase VI, subunit B (Top6B) [Thermococcus
          gammatolerans EJ3]
          Length = 561

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTS 65
          +   +  + E + NSLDA  E+     +   I   G+      + DNG G+  
Sbjct: 33 VRSLTTLVHEAVTNSLDACEEAGIPPYIRVEIEELGREHYKVVVEDNGPGIPE 85


>gi|254172371|ref|ZP_04879046.1| DNA topoisomerase VI, B subunit [Thermococcus sp. AM4]
 gi|214033300|gb|EEB74127.1| DNA topoisomerase VI, B subunit [Thermococcus sp. AM4]
          Length = 560

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 20 IERPSIAIKELIENSLDA--ESSR---VETVIAGGGKS--FFQITDNGFGMTS 65
          +   +  + E + NSLDA  E+     +   I   G+      + DNG G+  
Sbjct: 33 VRSLTTLVHEAVTNSLDACEEAGIPPYIRVEIEELGREHYKVVVEDNGPGIPE 85


>gi|254471500|ref|ZP_05084902.1| periplasmic sensor signal transduction histidine kinase
           [Pseudovibrio sp. JE062]
 gi|211959646|gb|EEA94844.1| periplasmic sensor signal transduction histidine kinase
           [Pseudovibrio sp. JE062]
          Length = 609

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 26  AIKELIENSLDA--ESS----RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHCTS 78
            +  L++N+LDA  E+      +  ++    G     + D G G+  E      +   +S
Sbjct: 498 VV--LLQNALDATVEAGLEGGVISILLESSAGSCALMVCDQGSGIPKELEEKVFEPFFSS 555

Query: 79  KISDDFSNIHTFGFRGEALP-SI--GAVSHLTLMSRPPQNNTGAQI 121
           K         + G  G A   SI       LTL S P        +
Sbjct: 556 K--------GSLGL-GLATALSIVDSHEGELTLSSAPHAGTCATVM 592


>gi|170746672|ref|YP_001752932.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653194|gb|ACB22249.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 461

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 26  AIKELIENSLD---AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           A+  LI+N+L    A    V   +        Q+TD G G+  EE+     R+
Sbjct: 348 AVSNLIDNALKFTPAG-GEVTVALIRNPLG-IQVTDTGCGIPPEELSAVRARY 398


>gi|218231212|ref|YP_002369468.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218159169|gb|ACK59161.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           E+ +  I  LI NS+   D E  ++  +++    K   ++ DNG G+ S+ +P   +R  
Sbjct: 370 EKINRVISNLIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDTLPYIFERFY 429


>gi|19909737|dbj|BAB87064.1| DNA gyrase subunit B [bacterium SD212]
          Length = 479

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V+ ++   G     +TDNG G+ ++
Sbjct: 12 VYEVVDNAIDEALAGHADLVQVILNADG--SVTVTDNGRGIPTD 53


>gi|19909735|dbj|BAB87063.1| DNA gyrase subunit B [bacterium PC2]
          Length = 476

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V+ ++   G     +TDNG G+ ++
Sbjct: 12 VYEVVDNAIDEALAGHADLVQVILNADG--SVTVTDNGRGIPTD 53


>gi|89901515|ref|YP_523986.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89346252|gb|ABD70455.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 544

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
             +TD G G+    +        TSK
Sbjct: 461 ISVTDTGCGIPPANLERIFDPFFTSK 486


>gi|72382146|ref|YP_291501.1| heat shock protein 90 [Prochlorococcus marinus str. NATL2A]
 gi|72001996|gb|AAZ57798.1| ATP-binding region, ATPase-like protein [Prochlorococcus marinus
           str. NATL2A]
          Length = 634

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 33/118 (27%)

Query: 27  IKELIENSLDA--------------ESS--RVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           I+ELI NS+DA               +   +++  I    K+   I+DNG GMTS+EI  
Sbjct: 32  IRELISNSVDAIKKRKMAAFAGDCVAADDEKIKISIDREHKTL-TISDNGIGMTSDEIKK 90

Query: 71  AVQRHCTS---------KISDDFSNIHT-FGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            + +   S         K  DD    H   GF      S   V+  + ++++  +N++
Sbjct: 91  YINQVAFSSAEEFLEKYKQPDDGFIGHFGLGF-----YSSFMVAEEVEIITKSAKNDS 143


>gi|41407320|ref|NP_960156.1| hypothetical protein MAP1222 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395672|gb|AAS03539.1| hypothetical protein MAP_1222 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 480

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 21  ERPSIAIKELIENSLDAESSR-------VETVIAGG-GKSFFQITDNGFGMTSEEIPMAV 72
            R S  +  L++N     + R       +E  +  G G +   +TD G G+  +E     
Sbjct: 370 TRLSQIVSNLLDN-----ARRYTPPGGAIEIDLRAGDGAAEITVTDTGPGIPDDERERIF 424

Query: 73  QR 74
            R
Sbjct: 425 DR 426


>gi|17231753|ref|NP_488301.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17133396|dbj|BAB75960.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1036

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 13/62 (20%)

Query: 31  IENSLDA--ESS-----------RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT 77
           I N++DA  +S            ++ T           I DNG G+  E      +   T
Sbjct: 931 INNAIDALEKSRLIGEIVDTPQIKISTKFINNNTVLICIADNGCGIPEEMRSRIFEPFFT 990

Query: 78  SK 79
           +K
Sbjct: 991 TK 992


>gi|158311873|ref|YP_001504381.1| DNA gyrase subunit B [Frankia sp. EAN1pec]
 gi|158107278|gb|ABW09475.1| DNA gyrase, B subunit [Frankia sp. EAN1pec]
          Length = 652

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 27 IKELIENSLD---AE-SSRVETVI-AGGGKSFFQITDNGFGMTSEEIP 69
          + E+++N++D   A     +   + A GG    ++TDNG G+   E P
Sbjct: 37 VYEVVDNAVDEALAGYCDTISVTLLADGG---VRVTDNGRGIPVGEHP 81


>gi|313899626|ref|ZP_07833134.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
 gi|312955611|gb|EFR37271.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
          Length = 334

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 41  RVETVIAGGGK-SFFQITDNGFGMTSEEIPMAVQRHC 76
            +   +      +  +I D+G G+ +EE+P   +R  
Sbjct: 248 SIHISVQDNPLHTCIRIQDSGKGIPAEELPHIFERFY 284


>gi|291519642|emb|CBK74863.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 26  AIKELIENSL---DAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            +  L+EN++   D     V   + +     + ++ DNG G+    +    +R  
Sbjct: 368 VVTNLVENAIKYNDEG-GWVHISLNSDHQFFYIKVEDNGLGIPENSVDHIFERFY 421


>gi|262281565|ref|ZP_06059344.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262257024|gb|EEY75763.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|229120227|ref|ZP_04249478.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228663268|gb|EEL18857.1| Sensor histidine kinase [Bacillus cereus 95/8201]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|225570407|ref|ZP_03779432.1| hypothetical protein CLOHYLEM_06507 [Clostridium hylemonae DSM
           15053]
 gi|225160778|gb|EEG73397.1| hypothetical protein CLOHYLEM_06507 [Clostridium hylemonae DSM
           15053]
          Length = 339

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 26  AIKELIENSLD---AESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHCT 77
            +++L+ N+L    A S  +        G     I D G G+  E++P   ++  T
Sbjct: 233 VVEQLLSNALKYTRAGS--ISVYADKSRGAEVLVIEDTGIGIQEEDLPRVFEKGFT 286


>gi|212659883|gb|ACJ37006.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 267

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 2  EVVDNSVDEALAGHADSILVKIHIDG--SVSVSDNGRGIPVD 41


>gi|212659875|gb|ACJ37002.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659877|gb|ACJ37003.1| DNA gyrase subunit B [Xylella fastidiosa]
 gi|212659879|gb|ACJ37004.1| DNA gyrase subunit B [Xylella fastidiosa]
          Length = 268

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 4  EVVDNSVDEALAGHADSILVKIHIDG--SVSVSDNGRGIPVD 43


>gi|193214609|ref|YP_001995808.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
 gi|193088086|gb|ACF13361.1| histidine kinase [Chloroherpeton thalassium ATCC 35110]
          Length = 622

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 50  GKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           GK    + DNG G+  E +    +   T+K
Sbjct: 537 GKVIIDVADNGAGIAPENLKKIFEPFFTTK 566


>gi|168185741|ref|ZP_02620376.1| sensor protein ResE [Clostridium botulinum C str. Eklund]
 gi|169296325|gb|EDS78458.1| sensor protein ResE [Clostridium botulinum C str. Eklund]
          Length = 417

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 41  RVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFG 91
           R++  +     S    I DNG G+  +++ +   R   S   +D +N  + G
Sbjct: 331 RIKVRVEETPLSVSICIEDNGEGIPKDKLGVIFDRFYKS---EDSTNPMSIG 379


>gi|218901771|ref|YP_002449605.1| sensory box histidine kinase [Bacillus cereus AH820]
 gi|218537964|gb|ACK90362.1| sensory box histidine kinase [Bacillus cereus AH820]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|157363918|ref|YP_001470685.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
 gi|157314522|gb|ABV33621.1| DNA gyrase, B subunit [Thermotoga lettingae TMO]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++NS+D   A   + +   +     +  +I DNG G+  +
Sbjct: 38 VYEIVDNSIDEVMAGFCNTIRVTLFED--NTVEIEDNGRGIPVD 79


>gi|75288399|sp|Q5YLB4|GYRB_NICBE RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017095|gb|AAR07943.1| DNA gyrase B subunit [Nicotiana benthamiana]
          Length = 731

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           + E+++N++D   A  +++++ V+     +   I DNG G+ +E
Sbjct: 124 VYEILDNAVDEAQAGFATKIDVVLHAD--NSVSIADNGRGIPTE 165


>gi|28197950|ref|NP_778264.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1]
 gi|182680577|ref|YP_001828737.1| DNA gyrase subunit B [Xylella fastidiosa M23]
 gi|28056010|gb|AAO27913.1| DNA gyrase subunit B [Xylella fastidiosa Temecula1]
 gi|182630687|gb|ACB91463.1| DNA gyrase, B subunit [Xylella fastidiosa M23]
 gi|307579031|gb|ADN63000.1| DNA gyrase subunit B [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 53 EVVDNSVDEALAGHADSILVKIHIDG--SVSVSDNGRGIPVD 92


>gi|71899732|ref|ZP_00681884.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
 gi|71730527|gb|EAO32606.1| DNA gyrase, B subunit [Xylella fastidiosa Ann-1]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A  +  +   I   G     ++DNG G+  +
Sbjct: 53 EVVDNSVDEALAGHADSILVKIHIDG--SVSVSDNGRGIPVD 92


>gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
 gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
          Length = 1183

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 41  RVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
            ++  +    G +  ++TD G G+  +E+P   +R  
Sbjct: 448 EIQIRVRPVDGAARLEVTDTGVGIHPDELPHVFERFH 484


>gi|330447266|ref|ZP_08310916.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328491457|dbj|GAA05413.1| DNA gyrase, B subunit [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I   G     ++D+G G+ +E
Sbjct: 42 EVVDNSIDEALAGHCEDIIVTIHEDG--SVSVSDDGRGIPTE 81


>gi|325261682|ref|ZP_08128420.1| putative HAMP domain protein [Clostridium sp. D5]
 gi|324033136|gb|EGB94413.1| putative HAMP domain protein [Clostridium sp. D5]
          Length = 592

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 23/74 (31%)

Query: 30  LIENSLDAESSR----------VET-VIAGGGKSFFQITDNGFGMTSEEIPMA------V 72
           L+EN++     +          ++  V+   G +F +I DNG G+T E + +        
Sbjct: 481 LVENAI-----KYSLLESEHVFIQIYVVEFDGYAFVEIKDNGCGITQETVELVRSRIETF 535

Query: 73  QRHCTSK-ISDDFS 85
            R   SK ISD+  
Sbjct: 536 HRDHGSKEISDNLQ 549


>gi|323137621|ref|ZP_08072698.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397247|gb|EFX99771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 501

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 22  RPSIAIKELIENS---LDAESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHC 76
           R +     LI N+    DA   R+E   A  G+     + DNG G+  +++    +   
Sbjct: 383 RLAQVFTNLINNAARYTDAG-GRIEIAAARDGEEAVVTVRDNGIGIPRQQLSSIFEMFA 440


>gi|312794752|ref|YP_004027674.1| DNA gyrase subunit B [Burkholderia rhizoxinica HKI 454]
 gi|312166527|emb|CBW73530.1| DNA gyrase subunit B (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 843

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A   + +  VI     +   +TDNG G+ ++
Sbjct: 70  EVLDNSIDEALAGHCNDIHVVIHAD--NSISVTDNGRGIPTD 109


>gi|307293016|ref|ZP_07572862.1| ATP-binding region ATPase domain protein [Sphingobium
          chlorophenolicum L-1]
 gi|306881082|gb|EFN12298.1| ATP-binding region ATPase domain protein [Sphingobium
          chlorophenolicum L-1]
          Length = 566

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 29 ELIENSLDAESSRVET-VIAGGGKSFFQITDNGFGMT 64
          E I+N+  A ++R++   I        +I D+G G+ 
Sbjct: 33 EAIQNARRAGATRIDISRIESDRGPVLRIRDDGCGIA 69


>gi|300783223|ref|YP_003763514.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
 gi|299792737|gb|ADJ43112.1| DNA gyrase subunit B [Amycolatopsis mediterranei U32]
          Length = 683

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS D   A  ++++   +   G    Q+ D+G G+ 
Sbjct: 43 EVVDNSTDEGVAGHATKIVVTLHADG--SVQVDDDGRGIP 80


>gi|299768254|ref|YP_003730280.1| DNA gyrase, B subunit [Acinetobacter sp. DR1]
 gi|298698342|gb|ADI88907.1| DNA gyrase, B subunit [Acinetobacter sp. DR1]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|296271206|ref|YP_003653838.1| histidine kinase [Thermobispora bispora DSM 43833]
 gi|296093993|gb|ADG89945.1| histidine kinase [Thermobispora bispora DSM 43833]
          Length = 769

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 15  AAGEIIERPSIAIKELIENSLDAES-----SRVETV--IAGGGKSFFQITDNGFGMTSEE 67
           A G++I   +    ELIEN++   S     + V+    +   G +  ++ D G GMT E+
Sbjct: 513 AVGDVIHLLA----ELIENAV---SFSPPYTTVQVSGQLVAAGYA-IEVEDRGLGMTPED 564

Query: 68  IPMAVQRHC 76
           +  A +R  
Sbjct: 565 LEEANRRLA 573


>gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             G K   ++ DNG G++ E IP   +R  
Sbjct: 372 EEGDKIIIEVKDNGIGISKENIPRLFERFY 401


>gi|229020010|ref|ZP_04176797.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|229026244|ref|ZP_04182603.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228734960|gb|EEL85596.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228741283|gb|EEL91496.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 405

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 30  LIENSLDA---ESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+++A     +  V+ ++        QI D G G+  ++IP   +   T+K
Sbjct: 314 LIKNAIEAMSVGGTITVKVIVKD--VIIVQIIDEGCGIPKDKIPKLNEAFYTTK 365


>gi|242279295|ref|YP_002991424.1| CheA signal transduction histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242122189|gb|ACS79885.1| CheA signal transduction histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 724

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 15/64 (23%)

Query: 18  EIIERPSIAIKELIENSLDAE--------SS------RVETVIA-GGGKSFFQITDNGFG 62
            +IER    +  L+ NS+D          ++       +       GG     I D+G G
Sbjct: 439 TVIERLGDPLVHLLRNSIDHGIEGPEKRTATGKPRRGTITLSAEHSGGDVMILIEDDGKG 498

Query: 63  MTSE 66
           M+ E
Sbjct: 499 MSRE 502


>gi|167589739|ref|ZP_02382127.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia ubonensis Bu]
          Length = 630

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 23  PSIAIKELIENSLDA----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
               I  L+ N+LDA     +  +          G+  F I D+G G+  + +P   +  
Sbjct: 512 LQQVIVNLLGNALDAVRDAAARTIVIEAGEPDPQGRVRFTIADSGAGIAPDVLPHLFEPF 571

Query: 76  CTSK 79
            T+K
Sbjct: 572 VTTK 575


>gi|90581121|ref|ZP_01236920.1| DNA gyrase subunit B [Vibrio angustum S14]
 gi|90437642|gb|EAS62834.1| DNA gyrase subunit B [Vibrio angustum S14]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   I   G     ++D+G G+ +E
Sbjct: 42 EVVDNSIDEALAGHCEDIIVTIHEDG--SVSVSDDGRGIPTE 81


>gi|24374086|ref|NP_718129.1| sensor histidine kinase [Shewanella oneidensis MR-1]
 gi|24348569|gb|AAN55573.1|AE015696_3 sensor histidine kinase [Shewanella oneidensis MR-1]
          Length = 460

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 42  VETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           +E  I         +I DNG G+   +IP   +   T+K
Sbjct: 373 IEISINKFNNWINIEIEDNGCGIDDTDIPHIFEPFFTTK 411


>gi|332970301|gb|EGK09293.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Kingella kingae
          ATCC 23330]
          Length = 806

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A     +   I         I DNG G+ 
Sbjct: 52 EVLDNAIDEALAGHCDNITVAINAD--ESITIEDNGRGIP 89


>gi|330890079|gb|EGH22740.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. mori str.
           301020]
          Length = 453

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 39/128 (30%)

Query: 22  RPSIAIKELIENSL---DAESSRVETVIAGGGKS---FFQITDNGFGMTSEEIPMAVQRH 75
           R    I  L+ENS+   DA  +     +    +      ++ D+G G+   ++P   +R 
Sbjct: 353 RLQQLISNLLENSVRYTDAGGT---VQVRAAMRDDEVCIEVMDSGPGVDPAQLPRLFERF 409

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPVA 135
                            RGE              SR   +  G ++       +   P A
Sbjct: 410 Y----------------RGE-------------TSRNRASG-GWRVWGWRSVTALPSPTA 439

Query: 136 MNPGTIVE 143
                 + 
Sbjct: 440 AASAPTIR 447


>gi|326335477|ref|ZP_08201664.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692243|gb|EGD34195.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 617

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 79/262 (30%), Gaps = 42/262 (16%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT-SKI 80
           +KE I+NS+D     A   ++E  I         + D G G+   ++   V +  T  K 
Sbjct: 52  LKEAIDNSIDEFVMGAG-KQIEVRIEDN---KVTVRDFGRGIPLGKVVDVVSKMNTGGKY 107

Query: 81  SDDFSNIHTFGFRG------EALPS---IGAVSHLTLMSRPPQNNTGAQIAISGEKISSV 131
                   + G  G       AL S   + +V       R  Q  +        ++ S +
Sbjct: 108 DSRAFK-KSVGLNGVGTKAVNALSSYFYVASV-------RDGQRKSATFSLGVLQEESPL 159

Query: 132 RPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF-----TF 186
                  GT+V                K+ +  +  +  +++      P ++       F
Sbjct: 160 EASNEKRGTLVTFV-------PDGTIFKNYKFRSEYVVRMLKNYTYLNPGLTIIYNGEKF 212

Query: 187 STIKSNRYKMNFQSTNGNFPERISQVIGEDFI---NNAVELNEKSNEITLQGYTGIPTFN 243
            +       +   +   +F   I  + GED      ++     +     + G        
Sbjct: 213 FSENGLEDLLKEDNNEEDFAYPIIHLSGEDIEIALTHSKSQYSEQYYSFVNGQNTTQGGT 272

Query: 244 RGNANQFYVFINGRTVQDKFIL 265
             NA +  +    R   +K   
Sbjct: 273 HLNAYREAIVATLRNYYNKPYE 294


>gi|317120855|ref|YP_004100858.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
 gi|315590835|gb|ADU50131.1| DNA gyrase subunit B [Thermaerobacter marianensis DSM 12885]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +   +   G     + DNG G+ 
Sbjct: 42 EVVDNAVDEALAGRCTAITVTLHADG--SCSVRDNGGGIP 79


>gi|313902779|ref|ZP_07836176.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
 gi|313466899|gb|EFR62416.1| DNA gyrase subunit B [Thermaerobacter subterraneus DSM 13965]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A   + +   +   G     + DNG G+ 
Sbjct: 42 EVVDNAVDEALAGRCTAITVTLHADG--SCSVRDNGGGIP 79


>gi|307942709|ref|ZP_07658054.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4]
 gi|307773505|gb|EFO32721.1| DNA gyrase, B subunit [Roseibium sp. TrichSKD4]
          Length = 817

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A  +  V   +   G     + DNG G+ ++
Sbjct: 56 VYEVVDNAIDEALAGHADHVTVCLNADG--SVTVADNGRGIPTD 97


>gi|317056208|ref|YP_004104675.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315448477|gb|ADU22041.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 477

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 22  RPSIAIKELIENSL-----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           R + A+  LI+N++     D     +   +     K+  +I D+G G+ ++E+     ++
Sbjct: 372 RLTRAVYNLIDNAVRHIGDD---KWIGVTLKAENNKAVIEIADHGEGIPADELERIWDKY 428

Query: 76  CT 77
            T
Sbjct: 429 YT 430


>gi|296445647|ref|ZP_06887602.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b]
 gi|296256892|gb|EFH03964.1| DNA gyrase, B subunit [Methylosinus trichosporium OB3b]
          Length = 809

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 10/49 (20%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNG----FGMTSEE 67
          + E+++N++D   A  +S V   +   G     +TDNG     G+  EE
Sbjct: 49 VYEVVDNAIDEALAGHASLVTVTLDADG--SCTVTDNGRGVPTGIHKEE 95


>gi|294787816|ref|ZP_06753060.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453]
 gi|294484109|gb|EFG31792.1| DNA gyrase, B subunit [Simonsiella muelleri ATCC 29453]
          Length = 812

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++N++D   A     +   I         I DNG G+ 
Sbjct: 46 EVLDNAIDEALAGHCDNITVAINAD--ESITIEDNGRGIP 83


>gi|284041698|ref|YP_003392038.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
 gi|283945919|gb|ADB48663.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 22  RPSIAIKELIENSLD-AESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R   A+  L++N++    +   V+  + GG     ++ D+G G+  E++P    R  
Sbjct: 382 RLHRAVGNLLDNAVKHGGADGSVDVCVRGG---EVRVRDHGPGIAPEDLPHVFDRFY 435


>gi|218198180|gb|EEC80607.1| hypothetical protein OsI_22965 [Oryza sativa Indica Group]
          Length = 819

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 17/62 (27%)

Query: 26  AIKELIENSLDA---ESSRVETV------IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           AI EL++N++D     ++ V+        I         I D+G GM+ E +     RHC
Sbjct: 275 AIAELLDNAVDEVNNGATFVKIDKIKCSLIDEYSL---VIQDDGGGMSPESL-----RHC 326

Query: 77  TS 78
            S
Sbjct: 327 MS 328


>gi|86355724|ref|YP_467616.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86279826|gb|ABC88889.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
          Length = 442

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LIEN++D    +V   +     K    I D+G G + + +    + + T +  +D
Sbjct: 336 LIENAVDYAREKVTITVEHDQDKVLIVIEDDGNGYSPDILTRIGEPYVTKRQKED 390


>gi|34558410|ref|NP_908225.1| putative two-component sensor [Wolinella succinogenes DSM 1740]
 gi|34484129|emb|CAE11125.1| PUTATIVE TWO-COMPONENT SENSOR [Wolinella succinogenes]
          Length = 548

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 28  KELIEN-------SLDA------ES--SRVETVIAGG-GKSFFQITDNGFGMTSEEIPMA 71
           KELI+N       S++A       S   R+E        K+   I DN  G+  E +   
Sbjct: 438 KELIQNLLSLFQNSIEAFEGIKEGSEPKRIEVETRRLKQKALIIIRDNAGGIDEEMVEKI 497

Query: 72  VQRHCTSKIS 81
            Q + T+K  
Sbjct: 498 FQPYSTTKFQ 507


>gi|116750115|ref|YP_846802.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB]
 gi|116699179|gb|ABK18367.1| DNA gyrase subunit B [Syntrophobacter fumaroxidans MPOB]
          Length = 808

 Score = 40.8 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 28/83 (33%)

Query: 7  SEKIINQIAAGEIIERPSIAIK-------------------ELIENSLD-A---ESSRVE 43
           E    QI    ++E  S   K                   E+++NS+D A       ++
Sbjct: 13 DEYTAQQI---TVLEGLSAVRKRPSMYIGNVSTEGLHHLVYEVVDNSIDEALVGHCDSIK 69

Query: 44 TVIAGGGKSFFQITDNGFGMTSE 66
            I   G     + DNG G+  +
Sbjct: 70 IQIHLDG--SVTVDDNGRGIPVD 90


>gi|332705417|ref|ZP_08425495.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332355777|gb|EGJ35239.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 473

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 26  AIKE----LIENSLD---AESSRVETVI------AGGGKSFFQITDNGFGMTSEEIPMAV 72
           A++E    LI+N+L    A   +++  +        G      I+D G G+  E++    
Sbjct: 341 ALREVLSNLIDNALKYTPAG-GKIDIQVGVGQWLDHGDAIAIAISDTGPGIAPEDLDHLF 399

Query: 73  QRHC 76
           +RH 
Sbjct: 400 ERHY 403


>gi|327290024|ref|XP_003229724.1| PREDICTED: structural maintenance of chromosomes flexible hinge
           domain-containing protein 1-like, partial [Anolis
           carolinensis]
          Length = 1421

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 29  ELIENSLDA-----ESSRVETVI---AGGGKSFFQITDNGFGMTSEEI 68
           ELI+NSL A        R++  +      GK    + DNG GM+S+++
Sbjct: 85  ELIDNSLSATSQNTGVRRIQLKLLFDDTQGKPAIVVIDNGRGMSSKQL 132


>gi|326797322|ref|YP_004315142.1| integral membrane sensor signal transduction histidine kinase
           [Marinomonas mediterranea MMB-1]
 gi|326548086|gb|ADZ93306.1| integral membrane sensor signal transduction histidine kinase
           [Marinomonas mediterranea MMB-1]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 30  LIENSL----DAESSRVETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC--TSK 79
           L++N+L    D  S  +   +    G +  +++D G G+  E+  +  +R    TSK
Sbjct: 359 LLDNALKYAPD--SRVITLSLESSLGNTLIKVSDQGKGIAEEDQSVVTKRFKRLTSK 413


>gi|325528071|gb|EGD05283.1| DNA gyrase subunit B [Burkholderia sp. TJI49]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|324324615|gb|ADY19875.1| sensory histidine kinase DcuS [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIRYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|315651450|ref|ZP_07904473.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
          saburreum DSM 3986]
 gi|315486270|gb|EFU76629.1| DNA topoisomerase (ATP-hydrolyzing) subunit B [Eubacterium
          saburreum DSM 3986]
          Length = 637

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A     +   +   G     + D+G G+  E
Sbjct: 40 EIMDNSIDEHLAGYCKNIWVTLNADG--SCTVRDDGRGIPVE 79


>gi|307731199|ref|YP_003908423.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1003]
 gi|307585734|gb|ADN59132.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1003]
          Length = 447

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 30  LIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSE 66
           L+EN+L+  +  VE       G+    + D+G G+  +
Sbjct: 337 LVENALEHGAPPVEISTARRDGRWLISVRDHGGGIPDD 374


>gi|284041476|ref|YP_003391816.1| DNA gyrase B subunit [Conexibacter woesei DSM 14684]
 gi|283945697|gb|ADB48441.1| DNA gyrase, B subunit [Conexibacter woesei DSM 14684]
          Length = 808

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          + E+++NS+D   A  +S V+  I     +   + DNG G+ 
Sbjct: 51 VYEVVDNSVDEALAGHASAVDVTIHPD--NSITVVDNGRGIP 90


>gi|257168236|gb|ACV40251.1| DNA gyrase subunit B [Yersinia frederiksenii]
 gi|257168242|gb|ACV40254.1| DNA gyrase subunit B [Yersinia frederiksenii]
          Length = 279

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 29/249 (11%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----------SEEIPMAVQR 74
           E+++N++D   A     +   I     +   + D+G G+           + E+ M V  
Sbjct: 13  EVVDNAIDEALAGHCKEIVVTIHSD--NSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVL- 69

Query: 75  HCTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRP 133
           H   K  D+   + + G  G  +  + A+S  L L+ R           +   +      
Sbjct: 70  HAGGKFDDNSYKV-SGGLHGVGVSVVNALSEKLELVIRREGKVHEQTYRMGVPQAPLKVV 128

Query: 134 VAMNP-GTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSN 192
              +  GT V         P+   F  + + +  ++   +R ++     VS         
Sbjct: 129 GETDQTGTTVRF------WPSFQTFTNNTEFQYEILAKRLRELSFLNSGVSIKLK--DKR 180

Query: 193 RYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYV 252
             K +     G     +  +       +       + +  +     +   N G     Y 
Sbjct: 181 NDKEDHFHYEGGIKAFVEYLNKNKNPIHPKVFYFSTMKDDIGVEVALQW-NDGFQENIYC 239

Query: 253 FINGRTVQD 261
           F N    +D
Sbjct: 240 FTNNIPQRD 248


>gi|269957270|ref|YP_003327059.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305951|gb|ACZ31501.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894]
          Length = 347

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 19/67 (28%)

Query: 21  ERPSIAIKELIENSL-----------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ER    +  L++N++           DA           G     ++ D+G G+  E+  
Sbjct: 227 ERLRQIVVNLLQNAIRHSPPGGEIRLDA--------YPEGDDVVIEVADDGPGIAPEDRD 278

Query: 70  MAVQRHC 76
              +R  
Sbjct: 279 RVFERFA 285


>gi|225862547|ref|YP_002747925.1| sensory box histidine kinase [Bacillus cereus 03BB102]
 gi|225786989|gb|ACO27206.1| sensory box histidine kinase [Bacillus cereus 03BB102]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|218291333|ref|ZP_03495293.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238779|gb|EED05993.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 30  LIENSL---DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCT 77
           LI+N++   DA   +VE             + D G G+  E +     R  T
Sbjct: 309 LIDNAIKFTDAG-GKVEIAATRNRNQAILSVRDTGIGIAKEHLERVFDRFYT 359


>gi|206558823|ref|YP_002229583.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315]
 gi|198034860|emb|CAR50732.1| DNA gyrase subunit B [Burkholderia cenocepacia J2315]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|171316343|ref|ZP_02905563.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5]
 gi|171098472|gb|EDT43274.1| DNA gyrase, B subunit [Burkholderia ambifaria MEX-5]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|170697756|ref|ZP_02888843.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10]
 gi|170137371|gb|EDT05612.1| DNA gyrase, B subunit [Burkholderia ambifaria IOP40-10]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|167822114|ref|ZP_02453585.1| DNA gyrase subunit B [Burkholderia pseudomallei 9]
 gi|226193304|ref|ZP_03788914.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9]
 gi|225934904|gb|EEH30881.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pakistan 9]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 50 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 89


>gi|167582968|ref|ZP_02375842.1| DNA gyrase subunit B [Burkholderia thailandensis TXDOH]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 50 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 89


>gi|167560988|ref|ZP_02353904.1| DNA gyrase subunit B [Burkholderia oklahomensis EO147]
 gi|167568252|ref|ZP_02361126.1| DNA gyrase subunit B [Burkholderia oklahomensis C6786]
          Length = 823

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 50 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 89


>gi|165975921|ref|YP_001651514.1| nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303252132|ref|ZP_07338300.1| nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245301|ref|ZP_07527389.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247468|ref|ZP_07529513.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249696|ref|ZP_07531676.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307254250|ref|ZP_07536091.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256517|ref|ZP_07538298.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258712|ref|ZP_07540444.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260946|ref|ZP_07542629.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165876022|gb|ABY69070.1| nitrate/nitrite sensor protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302648915|gb|EFL79103.1| nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853642|gb|EFM85859.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855971|gb|EFM88129.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858262|gb|EFM90338.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306862797|gb|EFM94750.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864927|gb|EFM96829.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867063|gb|EFM98919.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869358|gb|EFN01152.1| Nitrate/nitrite sensor protein NarQ [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 571

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 2   KIR-----KLSEKIINQI-AAGEIIERPSIAIKELIENSLD-AESSRVETVIAGG--GKS 52
           +IR     +L+ K+ +QI +A + +      ++E + N++  A +S ++ +      G+ 
Sbjct: 454 RIRTSAQIRLNCKLPSQIFSAQQQVHAL-QIVREAVINAIKHANASEIDVIAETNADGEH 512

Query: 53  FFQITDNGFGMTSE 66
              I DNG G+ S+
Sbjct: 513 CLIIRDNGKGIASD 526


>gi|161723181|ref|YP_443735.2| DNA gyrase subunit B [Burkholderia thailandensis E264]
 gi|167620901|ref|ZP_02389532.1| DNA gyrase subunit B [Burkholderia thailandensis Bt4]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 50 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 89


>gi|154493654|ref|ZP_02032974.1| hypothetical protein PARMER_02994 [Parabacteroides merdae ATCC
           43184]
 gi|154086864|gb|EDN85909.1| hypothetical protein PARMER_02994 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 30  LIENS----LDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCT 77
           L+ N+    LD     V   +   G      + DNG G+ SE I     R  T
Sbjct: 524 LLSNAFKFTLDGG--TVTIHLKDKGDQVELSVEDNGKGIPSENIASVFDRFFT 574


>gi|254246825|ref|ZP_04940146.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Burkholderia cenocepacia PC184]
 gi|124871601|gb|EAY63317.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B
          subunit [Burkholderia cenocepacia PC184]
          Length = 833

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 60 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 99


>gi|124002042|ref|ZP_01686896.1| topoisomerase IV subunit B [Microscilla marina ATCC 23134]
 gi|123992508|gb|EAY31853.1| topoisomerase IV subunit B [Microscilla marina ATCC 23134]
          Length = 621

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 27 IKELIENSLDAE----SSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
          +KE+++NS+D        ++E  +         + D G G+    +   +   C SKI+ 
Sbjct: 43 VKEILDNSIDEHMMGFGKKIEIKLEE---KRVVVRDYGRGIP---LGKVID--CVSKINT 94


>gi|170731359|ref|YP_001763306.1| DNA gyrase subunit B [Burkholderia cenocepacia MC0-3]
 gi|169814601|gb|ACA89184.1| DNA gyrase, B subunit [Burkholderia cenocepacia MC0-3]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|172059070|ref|YP_001806722.1| DNA gyrase subunit B [Burkholderia ambifaria MC40-6]
 gi|171991587|gb|ACB62506.1| DNA gyrase, B subunit [Burkholderia ambifaria MC40-6]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|118594216|ref|ZP_01551563.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181]
 gi|118439994|gb|EAV46621.1| DNA gyrase subunit B [Methylophilales bacterium HTCC2181]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A   + ++ +I     +   +TDNG G+ ++
Sbjct: 49 EVLDNAIDESLAGHCNDIKVIIHAD--NSITVTDNGRGIPTD 88


>gi|114568629|ref|YP_755309.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339091|gb|ABI64371.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 540

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 20/86 (23%)

Query: 5   KLSEKIINQIAAGEIIER---PSIAIKELIENSL-----DAESSRVETVIAGGGKS---- 52
           +L +    Q  +  +I R        + L++N+L     D   S V   I  G       
Sbjct: 405 RLDQ----QARSALVIGRGDPLGQVFRNLLDNALTFSPAD---SEVLISIRRGQHDGRAS 457

Query: 53  -FFQITDNGFGMTSEEIPMAVQRHCT 77
               + D G G+  + +     R  T
Sbjct: 458 LKIHVDDQGPGIPDDNLEAVFDRFYT 483


>gi|4996780|dbj|BAA78435.1| subunit B protein of DNA gyrase [bacterium rJ9]
 gi|4996822|dbj|BAA78456.1| subunit B protein of DNA gyrase [bacterium rA2]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I   G     +TDNG G+ 
Sbjct: 14 EVVDNSIDEALAGYCDDIAVTIHADG--SLSVTDNGRGIP 51


>gi|4996814|dbj|BAA78452.1| subunit B protein of DNA gyrase [bacterium rM14]
          Length = 321

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I   G     +TDNG G+ 
Sbjct: 12 EVVDNSIDEALAGYCDDIAVTIHADG--SLSVTDNGRGIP 49


>gi|4996800|dbj|BAA78445.1| subunit B protein of DNA gyrase [bacterium rM6]
          Length = 297

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I   G     +TDNG G+ 
Sbjct: 8  EVVDNSIDEALAGYCDDIAVTIHADG--SLSVTDNGRGIP 45


>gi|4996786|dbj|BAA78438.1| subunit B protein of DNA gyrase [bacterium rJ13]
          Length = 323

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT 64
          E+++NS+D   A     +   I   G     +TDNG G+ 
Sbjct: 14 EVVDNSIDEALAGYCDDIAVTIHADG--SLSVTDNGRGIP 51


>gi|83652312|gb|ABC36375.1| DNA gyrase, B subunit [Burkholderia thailandensis E264]
          Length = 867

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 95  EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 134


>gi|78064661|ref|YP_367430.1| DNA gyrase subunit B [Burkholderia sp. 383]
 gi|77965406|gb|ABB06786.1| DNA gyrase subunit B [Burkholderia sp. 383]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|34556461|ref|NP_906276.1| DNA gyrase subunit B [Wolinella succinogenes DSM 1740]
 gi|34482175|emb|CAE09176.1| DNA GYRASE SUBUNIT B [Wolinella succinogenes]
          Length = 772

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   +   G +  +  DNG G+  +
Sbjct: 42 EVVDNSIDEAMAGHCNTISITLTKEGSAIIE--DNGRGIPVD 81


>gi|19909685|dbj|BAB87038.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 303

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 8  EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 47


>gi|19909687|dbj|BAB87039.1| DNA gyrase subunit B [Burkholderia cepacia]
          Length = 305

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 8  EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 47


>gi|115350059|ref|YP_771898.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD]
 gi|115280047|gb|ABI85564.1| DNA gyrase subunit B [Burkholderia ambifaria AMMD]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|107024100|ref|YP_622427.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054]
 gi|116688027|ref|YP_833650.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424]
 gi|105894289|gb|ABF77454.1| DNA gyrase subunit B [Burkholderia cenocepacia AU 1054]
 gi|116646116|gb|ABK06757.1| DNA gyrase subunit B [Burkholderia cenocepacia HI2424]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|53717712|ref|YP_106698.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243]
 gi|53724903|ref|YP_101864.1| DNA gyrase subunit B [Burkholderia mallei ATCC 23344]
 gi|67642369|ref|ZP_00441126.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4]
 gi|76808573|ref|YP_331715.1| DNA gyrase subunit B [Burkholderia pseudomallei 1710b]
 gi|121600538|ref|YP_994144.1| DNA gyrase subunit B [Burkholderia mallei SAVP1]
 gi|124384090|ref|YP_001028199.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10229]
 gi|126439588|ref|YP_001057142.1| DNA gyrase subunit B [Burkholderia pseudomallei 668]
 gi|126451013|ref|YP_001079586.1| DNA gyrase subunit B [Burkholderia mallei NCTC 10247]
 gi|126452573|ref|YP_001064386.1| DNA gyrase subunit B [Burkholderia pseudomallei 1106a]
 gi|134281651|ref|ZP_01768359.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305]
 gi|167001182|ref|ZP_02266981.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20]
 gi|167717460|ref|ZP_02400696.1| DNA gyrase subunit B [Burkholderia pseudomallei DM98]
 gi|167736495|ref|ZP_02409269.1| DNA gyrase subunit B [Burkholderia pseudomallei 14]
 gi|167813573|ref|ZP_02445253.1| DNA gyrase subunit B [Burkholderia pseudomallei 91]
 gi|167843719|ref|ZP_02469227.1| DNA gyrase subunit B [Burkholderia pseudomallei B7210]
 gi|167892198|ref|ZP_02479600.1| DNA gyrase subunit B [Burkholderia pseudomallei 7894]
 gi|167900710|ref|ZP_02487915.1| DNA gyrase subunit B [Burkholderia pseudomallei NCTC 13177]
 gi|167908927|ref|ZP_02496018.1| DNA gyrase subunit B [Burkholderia pseudomallei 112]
 gi|167916968|ref|ZP_02504059.1| DNA gyrase subunit B [Burkholderia pseudomallei BCC215]
 gi|217424084|ref|ZP_03455584.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576]
 gi|237814478|ref|YP_002898929.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346]
 gi|242315971|ref|ZP_04814987.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b]
 gi|254174704|ref|ZP_04881365.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399]
 gi|254184146|ref|ZP_04890737.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655]
 gi|254186617|ref|ZP_04893134.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254194736|ref|ZP_04901167.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13]
 gi|254201969|ref|ZP_04908333.1| DNA gyrase, B subunit [Burkholderia mallei FMH]
 gi|254207301|ref|ZP_04913652.1| DNA gyrase, B subunit [Burkholderia mallei JHU]
 gi|254262120|ref|ZP_04953174.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a]
 gi|254298588|ref|ZP_04966039.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e]
 gi|254359610|ref|ZP_04975881.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280]
 gi|52208126|emb|CAH34056.1| DNA gyrase subunit B [Burkholderia pseudomallei K96243]
 gi|52428326|gb|AAU48919.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 23344]
 gi|76578026|gb|ABA47501.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710b]
 gi|121229348|gb|ABM51866.1| DNA gyrase, B subunit [Burkholderia mallei SAVP1]
 gi|124292110|gb|ABN01379.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10229]
 gi|126219081|gb|ABN82587.1| DNA gyrase, B subunit [Burkholderia pseudomallei 668]
 gi|126226215|gb|ABN89755.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106a]
 gi|126243883|gb|ABO06976.1| DNA gyrase, B subunit [Burkholderia mallei NCTC 10247]
 gi|134247318|gb|EBA47404.1| DNA gyrase, B subunit [Burkholderia pseudomallei 305]
 gi|147747863|gb|EDK54939.1| DNA gyrase, B subunit [Burkholderia mallei FMH]
 gi|147752843|gb|EDK59909.1| DNA gyrase, B subunit [Burkholderia mallei JHU]
 gi|148028824|gb|EDK86756.1| DNA gyrase, B subunit [Burkholderia mallei 2002721280]
 gi|157808695|gb|EDO85865.1| DNA gyrase, B subunit [Burkholderia pseudomallei 406e]
 gi|157934302|gb|EDO89972.1| DNA gyrase, B subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|160695749|gb|EDP85719.1| DNA gyrase, B subunit [Burkholderia mallei ATCC 10399]
 gi|169651486|gb|EDS84179.1| DNA gyrase, B subunit [Burkholderia pseudomallei S13]
 gi|184214678|gb|EDU11721.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1655]
 gi|217393147|gb|EEC33169.1| DNA gyrase, B subunit [Burkholderia pseudomallei 576]
 gi|237505877|gb|ACQ98195.1| DNA gyrase, B subunit [Burkholderia pseudomallei MSHR346]
 gi|238523508|gb|EEP86946.1| DNA gyrase, B subunit [Burkholderia mallei GB8 horse 4]
 gi|242139210|gb|EES25612.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1106b]
 gi|243063009|gb|EES45195.1| DNA gyrase, B subunit [Burkholderia mallei PRL-20]
 gi|254220809|gb|EET10193.1| DNA gyrase, B subunit [Burkholderia pseudomallei 1710a]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 50 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 89


>gi|134294131|ref|YP_001117866.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4]
 gi|134137288|gb|ABO53031.1| DNA gyrase subunit B [Burkholderia vietnamiensis G4]
          Length = 824

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + +   I     +   +TDNG G+ ++
Sbjct: 51 EVLDNSIDEALAGYCNDIHVTIHAD--NSISVTDNGRGIPTD 90


>gi|229182906|ref|ZP_04310139.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228600530|gb|EEK58117.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|227541190|ref|ZP_03971239.1| two-component system sensor kinase TcsS4 [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227183034|gb|EEI64006.1| two-component system sensor kinase TcsS4 [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGHVRISVHRQGPSTALIHVADDGEGIPPDQLGHIFERFY 315


>gi|227487462|ref|ZP_03917778.1| two-component system sensor kinase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092686|gb|EEI27998.1| two-component system sensor kinase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 375

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 21  ERPSIAIKELIENSL---DAESS-RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           +R    +  L+ N+L    A    R+     G   +   + D+G G+  +++    +R  
Sbjct: 256 QRFGQVMSNLLSNALRHTPAGGHVRISVHRQGPSTALIHVADDGEGIPPDQLGHIFERFY 315


>gi|226309941|ref|YP_002769835.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092889|dbj|BAH41331.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 30  LIENSL-----DAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L++N+L     D    R+       GG+    + D+G G++ E+IP    R 
Sbjct: 331 LLDNALKYTNED---GRIYVSCKKEGGRVSILVKDSGIGISKEDIPYLFDRF 379


>gi|226309595|ref|YP_002769489.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092543|dbj|BAH40985.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 41  RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRH 75
           ++   I  G +    ++ D+G G+  E +P    R 
Sbjct: 369 QITIEIKSGKRQLQIEVQDDGEGIAEELLPHLFHRF 404


>gi|196046842|ref|ZP_03114064.1| sensory box histidine kinase [Bacillus cereus 03BB108]
 gi|196022377|gb|EDX61062.1| sensory box histidine kinase [Bacillus cereus 03BB108]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|196041304|ref|ZP_03108598.1| sensory box histidine kinase [Bacillus cereus NVH0597-99]
 gi|228932004|ref|ZP_04094896.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229089638|ref|ZP_04220900.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|301052227|ref|YP_003790438.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|196027789|gb|EDX66402.1| sensory box histidine kinase [Bacillus cereus NVH0597-99]
 gi|228693668|gb|EEL47369.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228827587|gb|EEM73329.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|300374396|gb|ADK03300.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|152968610|ref|YP_001333719.1| putative transcription regulator, histidine kinase for citrate
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953459|gb|ABR75489.1| putative transcription regulator, histidine kinase for citrate
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 542

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 25  IAIKELIENSLDA------ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
             +  L++N+ +A       S ++E +I   G+    +I D G G+         +R  T
Sbjct: 433 SIVGNLLDNAYNASLRQPQGSKQIECLINSDGQEVIIEIADQGCGIDEALRDRIFERGVT 492

Query: 78  SKISDD----FSNIHTF 90
           S  S D       + ++
Sbjct: 493 SSASKDHGIGLWLVRSY 509


>gi|119897267|ref|YP_932480.1| putative two-component system histidine kinase [Azoarcus sp. BH72]
 gi|119669680|emb|CAL93593.1| putative two-component system histidine kinase [Azoarcus sp. BH72]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 16  AGEI--IERPSIAI-KELIENSLD-------AESSRVETVIAGGGKSFFQITDNGFGMTS 65
           +G++  +E  +  + +EL++N +D       A  S V       G    ++ D G G+  
Sbjct: 362 SGQVLQVEG-NSVLLRELVKNLVDNAIKYTPAGGS-VTARTRVAGAPILEVEDTGVGIPE 419

Query: 66  EEIPMAVQRHC 76
            +     +R  
Sbjct: 420 ADRERVFERFY 430


>gi|189423638|ref|YP_001950815.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189419897|gb|ACD94295.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 503

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 37  AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISD 82
           A   RVE  +    +    ++D G G+  + +      + TSK   
Sbjct: 414 AGLIRVEIDVEEQKRLTIAVSDTGGGIPPQLLHSLFDPYVTSKFRT 459


>gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             G K    + DNG G++ E IP   +R  
Sbjct: 372 EEGDKIIITVEDNGIGISKENIPRLFERFY 401


>gi|106734155|gb|ABF82554.1| DNA topoisomerase IV subunit beta [uncultured bacterium]
          Length = 47

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 10/44 (22%)

Query: 29 ELIENSLDAE------SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+            ++  I  G  +  ++ DNG G+  +
Sbjct: 5  EIVDNSI--GEALVGYCDTIKVTIEPG--NSIKVEDNGRGIPVD 44


>gi|49481775|ref|YP_034835.1| sensory histidine kinase DcuS [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49333331|gb|AAT63977.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 534

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 434 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 487


>gi|2827016|gb|AAC38108.1| DNA gyrase subunit B [Buchnera aphidicola]
          Length = 803

 Score = 40.8 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 84/248 (33%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A     ++ VI     +   I D+G G+      EE   A +      H
Sbjct: 42  EIVDNSIDEALAGFCKEIKVVIHSD--NSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLH 99

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
              K  +    I + G  G  +  + A+S  L L+          +     E  +   P+
Sbjct: 100 SGGKFDNASYKI-SGGLHGVGISVVNALSEKLELI----IYKNKKKYRQQYENGNPESPL 154

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
            +   T +    + F  P+   F    Q +  +++  +R ++     +      +K NR 
Sbjct: 155 CIIGATEITGTYIRF-WPSYKIFTNKTQFQYEILSKRLRELSFLNSNI---LIHLKDNRT 210

Query: 195 KMNFQSTN-GNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
            +  +    G     I  +    F  N      +  +  ++    I   N    N    F
Sbjct: 211 NLEEKYHYKGGIKAFIKFLNKNKFPINLNIFYFRCIKNQIELEIAIQWNNSHQEN-ILCF 269

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 270 TNNIPQKD 277


>gi|333031196|ref|ZP_08459257.1| ATP-binding region ATPase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741793|gb|EGJ72275.1| ATP-binding region ATPase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 859

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 31/96 (32%)

Query: 27  IKELIENSLDA------------ESSRVETVIAG-GGKSFFQITDNGFGMTSE------- 66
           I+ELI+NS DA               ++   +      +F  + DNG GM+         
Sbjct: 385 IRELIQNSRDAIFARSFVEKHFTG--KITIRVEKIHSDTFLTVEDNGVGMSERVLTGPLL 442

Query: 67  EIPMAVQRHCTSK-ISDDFSNIHTFGFRGEALPSIG 101
           +   +     TS  I  +F  + + GF+     SIG
Sbjct: 443 DFGTSF---WTSSLIKSEFPGLRSSGFK-----SIG 470


>gi|325123497|gb|ADY83020.1| DNA gyrase, subunit B (type II topoisomerase) [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|323699691|ref|ZP_08111603.1| DNA gyrase, B subunit [Desulfovibrio sp. ND132]
 gi|323459623|gb|EGB15488.1| DNA gyrase, B subunit [Desulfovibrio desulfuricans ND132]
          Length = 799

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 75/247 (30%), Gaps = 26/247 (10%)

Query: 27  IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGM-----TSEEIPMA----VQ 73
           + E+I+NS+D   A    +++  +     +   +TDNG G+       E+IP        
Sbjct: 40  VYEVIDNSIDEAMAGYCDKIKVTLHMD--NSCTVTDNGRGIPVDIHPKEKIPAVQVAMTT 97

Query: 74  RHCTSKISDDFSNIHTFGFRGEALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRP 133
            H   K  +D   + + G  G  +  + A+S   + +   ++    ++      +     
Sbjct: 98  LHAGGKFDNDSYKV-SGGLHGVGVSCVNALSEF-METTVKRDGKTWRMKFERGHVVKGLE 155

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
                 +    +          +  +  Q + +++    + +A     +   F   ++  
Sbjct: 156 EVGPADSTGTSQRF----RPDEDIFEVNQFDYDVLRKRFKELAYLNSGLEIEFKDERNPE 211

Query: 194 YKMNFQSTNGNFPERISQVIGE-----DFINNAVELNEKSNEITLQGYTGIPTFNRGNAN 248
            K       G   + +  +        + +    E      E  LQ            AN
Sbjct: 212 SKPEIFKFTGGIKQYVKDINSNLTTIGEIVYGEGESENMLVEFALQYTASYKENTYTFAN 271

Query: 249 QFYVFIN 255
                  
Sbjct: 272 NIRTIEG 278


>gi|301348105|ref|ZP_07228846.1| putative two-component regulatory system [Acinetobacter baumannii
           AB056]
          Length = 542

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----SKI 80
            A+ EL +N+ DA +  VE       K+   + DNG GMT  E      R  T    SK 
Sbjct: 24  TALSELFKNAHDAYADNVEVDYIR-KKNLLILRDNGLGMTRAEFE---DRWLTIGTDSKF 79

Query: 81  SDDFSNIH------------TFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            +D   I               G +G    +I A+   + +M+R  ++N 
Sbjct: 80  -EDEDAIEKPAIDINKDKRPVMGEKGIGRLAIAAIGPQVLVMTRSKRDNE 128


>gi|300907557|ref|ZP_07125195.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301302184|ref|ZP_07208316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300400724|gb|EFJ84262.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300842347|gb|EFK70107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315252728|gb|EFU32696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 21  ERPSIAIKELIENSLDAESSR--VETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
           +R +  +  L  N++ A      +   ++  G      +TD+G G+ ++++      + T
Sbjct: 348 DRLTQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQLDAIFTPYFT 407

Query: 78  SK 79
           +K
Sbjct: 408 TK 409


>gi|299068445|emb|CBJ39668.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           CMR15]
          Length = 634

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 22  RPSIAIKELIENSLDA-------ESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQ 73
           R    +  LI N++DA       E++ V    A         + D G G+  E +P   +
Sbjct: 519 RLEQVLVNLIRNAIDATAEAPRPEAAGVRVTAAADDALVRITVRDAGPGIAPEVLPHLFE 578

Query: 74  RHCTSK 79
              T+K
Sbjct: 579 PFFTTK 584


>gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 589

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LI+N+L       S  +       G     I D+G G+  E++P   +R  
Sbjct: 489 LIDNALRHTSSEGSVSIAVHSVKDGLK-IDIKDSGSGIPEEDLPFIFERFY 538


>gi|294675109|ref|YP_003575725.1| type II topoisomerase family protein [Prevotella ruminicola 23]
 gi|294472315|gb|ADE81704.1| type II topoisomerase family protein [Prevotella ruminicola 23]
          Length = 649

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 71/266 (26%), Gaps = 38/266 (14%)

Query: 27  IKELIENSLD-----AESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTS-KI 80
           +KE+ +NS+D     A   R+E  +         + D G G+   ++  +V    TS K 
Sbjct: 54  LKEVFDNSIDEFKMKAG-DRIEVNVEDN--LRISVRDYGRGIPQGKLIESVSILNTSGKF 110

Query: 81  SDDFSNIHTFGFRG------EALPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSVRPV 134
                   + G  G       AL S     H  + S        A             P 
Sbjct: 111 DSKAFK-KSIGLNGVGVKAVNALSS-----HFEVHSYRDGKVRKAVFECGKLISDVTEPS 164

Query: 135 AMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNRY 194
               GT +                 + Q    ++ +++R        +  T         
Sbjct: 165 QDENGTYIYFE-------PDATKFINYQFHDEIVENMLRNYTYLN--IGLTIMYNGRRIL 215

Query: 195 ------KMNFQSTNGNFPERISQVIGED--FINNAVELNEKSNEITLQGYTGIPTFNRGN 246
                  +       +    I  + GED            +     + G          +
Sbjct: 216 SRHGLEDLLKDRMTSDALYPIVHLQGEDIEIAFTHANQYGEEYYSFVNGQHTTQGGTHQS 275

Query: 247 ANQFYVFINGRTVQDKFILSTIRTAY 272
           A + ++    +    K+    IRT  
Sbjct: 276 AFKEHIARTIKEFYGKYEYGDIRTGI 301


>gi|293611381|ref|ZP_06693677.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826253|gb|EFF84622.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 822

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     +   I         ++DNG G+ ++
Sbjct: 56 EVVDNAIDEALAGHCDEIIVTIHED--ESVSVSDNGRGIPTD 95


>gi|251811507|ref|ZP_04825980.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874798|ref|ZP_06283677.1| histidine kinase [Staphylococcus epidermidis SK135]
 gi|251804972|gb|EES57629.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296514|gb|EFA89029.1| histidine kinase [Staphylococcus epidermidis SK135]
          Length = 512

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L+EN++    D+E  ++   I    +     + DNG GM+   +    Q      +  D 
Sbjct: 414 LVENAIKHGRDSEPLKITIRIRLTKRKLHILVHDNGIGMSPSHLEHVRQ-----SLHHDV 468

Query: 85  SNIHTFG 91
            +    G
Sbjct: 469 FDTTHLG 475


>gi|209519931|ref|ZP_03268712.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. H160]
 gi|209499633|gb|EDZ99707.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. H160]
          Length = 460

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 15/61 (24%)

Query: 25  IAIKELIENSL---------DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
             +K L++N++         D     +   ++  GK+  +I DNG G+   E        
Sbjct: 346 AVVKNLVDNAIRYTPEGGRVD-----LSVDVSD-GKAKLRIEDNGPGIPLAERDRVFDPF 399

Query: 76  C 76
            
Sbjct: 400 Y 400


>gi|197336272|ref|YP_002157140.1| sensor protein CpxA [Vibrio fischeri MJ11]
 gi|197317762|gb|ACH67209.1| sensor protein CpxA [Vibrio fischeri MJ11]
          Length = 462

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHC 76
            A++ +I N++   +  V   I   GK     + DNG G+  +E+    +   
Sbjct: 360 SAVENVIRNAIKYGNDVVTVNINDTGKILTIIVDDNGEGVPEDELQDIFKPFY 412


>gi|118476264|ref|YP_893415.1| sensory histidine kinase DcuS [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415489|gb|ABK83908.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 554

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 30  LIENSLDA--ES--SRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI+N+L+A       +VE  I  G      + D G G+  +EI     +  ++K
Sbjct: 454 LIDNALEAVTNCEKKQVEVEIQYGNTLIITVQDTGKGIQEKEIEALFTKGYSTK 507


>gi|72388583|gb|AAZ67935.1| DNA gyrase subunit B [Psychrobacter luti]
          Length = 746

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 20 IER--PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFG----MTSEE 67
          IER      + E+++NS+D   A    +++ +I         + DNG G    +  EE
Sbjct: 4  IERSGLHHMVFEVVDNSIDEALAGHCDQIDIIIHED--ESVSVMDNGRGVPVDIHPEE 59


>gi|330993293|ref|ZP_08317229.1| Chaperone protein htpG [Gluconacetobacter sp. SXCC-1]
 gi|329759695|gb|EGG76203.1| Chaperone protein htpG [Gluconacetobacter sp. SXCC-1]
          Length = 627

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 52/135 (38%)

Query: 27  IKELIENSLDA-----------ESS------RVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++EL+ N+ DA            +       ++             ITD+G GM+ EE+ 
Sbjct: 42  LRELVANAADATDKRRFEALTDGARALPEDAKIRINPDKD-ARLLTITDDGAGMSKEELA 100

Query: 70  MAVQRHCTSKISDDFSNIHTFGFR--GEALPS---------IGA----------VS-HLT 107
                        +   I   G R  GE L +         IG           V+  + 
Sbjct: 101 R------------NLGTIARSGTRAFGEELANAKPEDKPSLIGQFGVGFYAAFMVADRVD 148

Query: 108 LMSRPPQNNTGAQIA 122
           ++SR   ++   Q +
Sbjct: 149 VVSRRAGSDEAWQWS 163


>gi|325293012|ref|YP_004278876.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
 gi|325060865|gb|ADY64556.1| DNA gyrase subunit B [Agrobacterium sp. H13-3]
          Length = 706

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+NS+D   A  ++ +E  +   G  F  +TDNG G+  E  P
Sbjct: 104 EVIDNSMDEAVAGHANFIEVHLDTEG--FLTVTDNGRGIPVENHP 146


>gi|324039430|dbj|BAJ78468.1| DNA gyrase subunit B [Alcanivorax sp. ST-TA]
          Length = 476

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ VI         I DNG G+      EE   A +      H
Sbjct: 16  EVVDNSIDEALAGFCSEIKVVIHPD--ESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLH 73

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  R                K   V  
Sbjct: 74  AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG 132

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
              + GT V  R              + +   +++   +R ++     V       +S  
Sbjct: 133 TTDSSGTAVHFR-------PSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGD 185

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
             +      G     +S +       N V       E           +N       + F
Sbjct: 186 EDV--FEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCF 243

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 244 TNNIPQRD 251


>gi|324039416|dbj|BAJ78461.1| DNA gyrase subunit B [Alcanivorax sp. 3-1-1]
          Length = 389

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ VI         I DNG G+      EE   A +      H
Sbjct: 8   EVVDNSIDEALAGFCSEIKVVIHPD--ESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLH 65

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  R                K   V  
Sbjct: 66  AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG 124

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
              + GT V  R              + +   +++   +R ++     V       +S  
Sbjct: 125 TTDSSGTAVHFR-------PSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGD 177

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
             +      G     +S +       N V       E           +N       + F
Sbjct: 178 EDV--FEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCF 235

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 236 TNNIPQRD 243


>gi|260655480|ref|ZP_05860968.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
 gi|260629928|gb|EEX48122.1| DNA gyrase, B subunit [Jonquetella anthropi E3_33 E1]
          Length = 640

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 23 PSIAIKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
              + E+++NS+D   A     +   I  G      +TD+G G+  E
Sbjct: 43 LHHCVYEIVDNSVDESLAGYCGHITVTI--GTDESVSVTDDGRGIPVE 88


>gi|260436130|ref|ZP_05790100.1| histidine kinase [Synechococcus sp. WH 8109]
 gi|260414004|gb|EEX07300.1| histidine kinase [Synechococcus sp. WH 8109]
          Length = 376

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 22  RPSIAIKELIENSL----DAESSRVETVIAG-GGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           R   A+  L++N+L    D   S +E  +   GG     I D+G G++  ++    QR  
Sbjct: 265 RLHRAVLNLLDNALRYSPD--ESSIEVSVRQSGGWWLLSIRDHGPGLSEADLTRMFQRFY 322


>gi|253575400|ref|ZP_04852738.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845397|gb|EES73407.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 459

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 32  ENSL----DAESSRVETV-IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           EN++    D+   ++             Q+ D G G+  +++P    R   SK
Sbjct: 360 ENAIRYTPDSG--KITLSTFQDSDYCGVQVADTGIGIEPDDMPHIFDRFYRSK 410


>gi|302877248|ref|YP_003845812.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2]
 gi|302580037|gb|ADL54048.1| DNA gyrase, B subunit [Gallionella capsiferriformans ES-2]
          Length = 792

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 73/266 (27%), Gaps = 33/266 (12%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E ++N++D   A   + +  +I     +   ++DNG G+      EE   A +      H
Sbjct: 41  EAVDNAVDEALAGHCNEINVIIHAD--NSISVSDNGRGIPTDIHKEEGRSAAEVIMTILH 98

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS---HLTL--------MSRPPQNNTGAQIAIS 124
              K   +   + + G  G  +  + A+S    LT+        M     +       I 
Sbjct: 99  AGGKFDSNSYKV-SGGLHGVGVSVVNALSEWLKLTIYREGKEHFMEFRHGDPVAPLKVIG 157

Query: 125 GEKISSVRPVAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSF 184
             K        +       + +  F I A+     S       I  +I          SF
Sbjct: 158 ESKKKGTVVHFLAAKETFGLIEFHFDILAKRLRELSFLNNGVKIA-LIDHRNGKEENFSF 216

Query: 185 TFSTIKSNRYKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNR 244
           T        +              +   IGE   +            T Q      T N 
Sbjct: 217 TGGIKG---FVDYMNRNKTALHPTVFHAIGEK--DGMTAEIAMQWNDTYQESVQCFTNNI 271

Query: 245 GNANQFYVFINGRTVQDKFILSTIRT 270
              +        R    + + + I  
Sbjct: 272 PQRDGGTHLTAMRAAMTRTLNNYIEA 297


>gi|213961962|ref|ZP_03390227.1| histidine kinase [Capnocytophaga sputigena Capno]
 gi|213955315|gb|EEB66632.1| histidine kinase [Capnocytophaga sputigena Capno]
          Length = 484

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 16/70 (22%)

Query: 17  GEIIERPSIAIKELIENSLDAESSR------VETVIAGGGKSF-FQITDNGFGMTSEEIP 69
           G ++         L++N+L  +++       +E  +    K     + DNG G+ + +  
Sbjct: 380 GRVVTN-------LVKNAL--QATENEPFPAIEVKLTKSEKDITLTVKDNGIGIANADKE 430

Query: 70  MAVQRHCTSK 79
              +   T+K
Sbjct: 431 KIFEPKFTTK 440


>gi|150376319|ref|YP_001312915.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150030866|gb|ABR62982.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 620

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 17/87 (19%)

Query: 3   IRK-LSEK----IINQIAAGEIIERPSIAIKELIENSL----DAESSRVETVIAG-GGKS 52
           IR  L         N+I       R    +  L++N+L    D+ +  ++          
Sbjct: 501 IRIDLPPDGLQVFGNRI-------RLEQVLINLLQNALEAIGDSGNGAIKVSCEETATAV 553

Query: 53  FFQITDNGFGMTSEEIPMAVQRHCTSK 79
              + DNG G+ ++          TSK
Sbjct: 554 TLTVADNGPGIPADVREELFTPFNTSK 580


>gi|138895124|ref|YP_001125577.1| sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196248295|ref|ZP_03146996.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134266637|gb|ABO66832.1| Sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196212020|gb|EDY06778.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 430

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++NS++A      +   +     S    ++DNG GMT E++    + + ++K
Sbjct: 324 LLKNSIEAMPNGGTLRVTVENQETSVVITVSDNGIGMTKEQVRRFGEPYFSTK 376


>gi|110832865|ref|YP_691724.1| DNA gyrase subunit B [Alcanivorax borkumensis SK2]
 gi|110645976|emb|CAL15452.1| DNA gyrase, subunit B [Alcanivorax borkumensis SK2]
          Length = 805

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ VI         I DNG G+      EE   A +      H
Sbjct: 43  EVVDNSIDEALAGFCSEIKVVIHPD--ESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLH 100

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  R                K   V  
Sbjct: 101 AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG 159

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
              + GT V  R              + +   +++   +R ++     V       +S  
Sbjct: 160 TTDSSGTAVHFR-------PSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGD 212

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
             +      G     +S +       N V       E           +N       + F
Sbjct: 213 EDV--FEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCF 270

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 271 TNNIPQRD 278


>gi|1705888|sp|P52687|CITA_KLEPN RecName: Full=Sensor histidine kinase CitA
 gi|924991|gb|AAC44733.1| sensor kinase CitA [Klebsiella pneumoniae]
 gi|238774040|dbj|BAH66536.1| putative transcription regulator and histidine kinase for citrate
           [Klebsiella pneumoniae]
          Length = 547

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 25  IAIKELIENSLDA------ESSRVETVIAGGGKS-FFQITDNGFGMTSEEIPMAVQRHCT 77
             +  L++N+ +A       S ++E +I   G+    +I D G G+         +R  T
Sbjct: 438 SIVGNLLDNAYNASLRQPQGSKQIECLINSDGQEVIIEIADQGCGIDEALRDRIFERGVT 497

Query: 78  SKISDD----FSNIHTF 90
           S  S D       + ++
Sbjct: 498 SSASKDHGIGLWLVRSY 514


>gi|18147169|dbj|BAB83065.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3]
 gi|324039432|dbj|BAJ78469.1| DNA gyrase subunit B [Alcanivorax sp. ST-TB]
 gi|324039434|dbj|BAJ78470.1| DNA gyrase subunit B [Alcanivorax sp. ST-TC]
 gi|324039438|dbj|BAJ78472.1| DNA gyrase subunit B [Alcanivorax sp. ST-M1]
 gi|324039440|dbj|BAJ78473.1| DNA gyrase subunit B [Alcanivorax sp. ST-M2]
 gi|324039442|dbj|BAJ78474.1| DNA gyrase subunit B [Alcanivorax sp. ST-M3]
 gi|324039444|dbj|BAJ78475.1| DNA gyrase subunit B [Alcanivorax sp. ST-M4]
 gi|324039446|dbj|BAJ78476.1| DNA gyrase subunit B [Alcanivorax sp. ST-T1]
 gi|324039448|dbj|BAJ78477.1| DNA gyrase subunit B [Alcanivorax sp. ST-T2]
 gi|324039450|dbj|BAJ78478.1| DNA gyrase subunit B [Alcanivorax sp. ST-T4]
 gi|324039460|dbj|BAJ78483.1| DNA gyrase subunit B [Alcanivorax sp. ST-T3]
          Length = 471

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ VI         I DNG G+      EE   A +      H
Sbjct: 16  EVVDNSIDEALAGFCSEIKVVIHPD--ESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLH 73

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  R                K   V  
Sbjct: 74  AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG 132

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
              + GT V  R              + +   +++   +R ++     V       +S  
Sbjct: 133 TTDSSGTAVHFR-------PSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGD 185

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
             +      G     +S +       N V       E           +N       + F
Sbjct: 186 EDV--FEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCF 243

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 244 TNNIPQRD 251


>gi|18147181|dbj|BAB83071.1| DNA gyrase subunit B [Alcanivorax sp. ST-1]
 gi|324039414|dbj|BAJ78460.1| DNA gyrase subunit B [Alcanivorax sp. ST1]
          Length = 466

 Score = 40.8 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 27/248 (10%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMT----SEEIPMAVQ-----RH 75
           E+++NS+D   A   S ++ VI         I DNG G+      EE   A +      H
Sbjct: 13  EVVDNSIDEALAGFCSEIKVVIHPD--ESMSIQDNGRGIPTEMHEEEGVSAAEVIMTVLH 70

Query: 76  CTSKISDDFSNIHTFGFRGEALPSIGAVS-HLTLMSRPPQNNTGAQIAI-SGEKISSVRP 133
              K  D+   + + G  G  +  + A+S  L L  R                K   V  
Sbjct: 71  AGGKFDDNTYKV-SGGLHGVGVSVVNALSEELKLTIRRNGQVHEQIYNHGVPAKPLEVVG 129

Query: 134 VAMNPGTIVEVRDLFFTIPARLNFLKSEQVETNLITDVIRRMAIAYPKVSFTFSTIKSNR 193
              + GT V  R              + +   +++   +R ++     V       +S  
Sbjct: 130 TTDSSGTAVHFR-------PSPETFSNIKFHYDILAKRLRELSFLNSGVRIHLMDERSGD 182

Query: 194 YKMNFQSTNGNFPERISQVIGEDFINNAVELNEKSNEITLQGYTGIPTFNRGNANQFYVF 253
             +      G     +S +       N V       E           +N       + F
Sbjct: 183 EDV--FEYEGGLSAFVSYLNTNKTPLNQVFHFNYEREEDGIAVEVAMQWNDSYQENIFCF 240

Query: 254 INGRTVQD 261
            N    +D
Sbjct: 241 TNNIPQRD 248


>gi|332291681|ref|YP_004430290.1| integral membrane sensor signal transduction histidine kinase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169767|gb|AEE19022.1| integral membrane sensor signal transduction histidine kinase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 482

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 26  AIKELIENSLDAESS----RVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
            +  L++N++ A  +     +   +    K     +TDNG G+++E      +   T+K
Sbjct: 384 VVTNLVKNAVQATKTTEHPNIIVAVQELEKEVEITVTDNGIGISAENEVKIFEPKFTTK 442


>gi|325281528|ref|YP_004254070.1| integral membrane sensor signal transduction histidine kinase
           [Odoribacter splanchnicus DSM 20712]
 gi|324313337|gb|ADY33890.1| integral membrane sensor signal transduction histidine kinase
           [Odoribacter splanchnicus DSM 20712]
          Length = 460

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 15/56 (26%)

Query: 30  LIENS---------LDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           L+EN+         +D    R+   +         + DNG G+   E+    +R+ 
Sbjct: 362 LLENAWKYSDDRVQIDITCRRIGRYVE------ISVKDNGRGIDKSELKNVFKRNY 411


>gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 361

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 47  AGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
             G K    + DNG G++ E IP   +R  
Sbjct: 277 EEGDKIIITVEDNGIGISKENIPRLFERFY 306


>gi|302522129|ref|ZP_07274471.1| heat shock protein [Streptomyces sp. SPB78]
 gi|302431024|gb|EFL02840.1| heat shock protein [Streptomyces sp. SPB78]
          Length = 615

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 25/140 (17%)

Query: 27  IKELIENSLDA-----ESS-----RVETVIAGGGKSFFQITDNGFGMTSEEI-PMAVQRH 75
           ++EL++N++DA      +      R+       G     ITD G G++  ++  +     
Sbjct: 41  LRELLQNAVDALTARRGADPDAPARIRLRT---GDHSLSITDTGIGLSERDMHELLATIG 97

Query: 76  CTSKISDDFSNIHTFGFRGEA----LPSIGAVSHLTLMSRPPQNNTGAQIAISGEKISSV 131
            +SK  D      + GF G+     L        + ++SR  +    A +  +     S 
Sbjct: 98  RSSKRGDGLEAARS-GFLGQFGIGLLACFVVAERIRVVSRSARTPDAAPVEWTARDDGSY 156

Query: 132 R------PVAMNPGTIVEVR 145
                        GT V + 
Sbjct: 157 TVRVLDVAAHPEAGTTVHLE 176


>gi|226308072|ref|YP_002768032.1| two-component histidine kinase PrrB [Rhodococcus erythropolis PR4]
 gi|226187189|dbj|BAH35293.1| two-component histidine kinase PrrB [Rhodococcus erythropolis PR4]
          Length = 447

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 31  IENSL-DA----ESSRVETV----IAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           ++N++ +A     +S V       +         I DNG G+ +EE     +R  
Sbjct: 342 LDNAITNAVRHGGASTVRITLARPVDSPDTVTITIDDNGCGIPAEERSSVFERFT 396


>gi|218780275|ref|YP_002431593.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761659|gb|ACL04125.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 703

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 14/66 (21%)

Query: 41  RVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTSKISDDFSNIHTFGFRGEALP 98
            +   I   G+      ++DNG G+  E +        T       +     GF    L 
Sbjct: 613 EINVSIRKVGEDQLAISVSDNGVGIPPENLDRIFTHGFT-------TRKRGHGF---GLH 662

Query: 99  --SIGA 102
             SI A
Sbjct: 663 SGSIAA 668


>gi|251797174|ref|YP_003011905.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247544800|gb|ACT01819.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 549

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 30  LIENSLDAESS----RVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N++++ S+     +   +   G+    I D G G+  E +    Q   + K
Sbjct: 446 LLKNAIESMSNGGEIHISIQLDAAGECLIFIQDQGCGIPEEHLHRLGQPFYSLK 499


>gi|168212344|ref|ZP_02637969.1| sensor histidine kinase [Clostridium perfringens CPE str. F4969]
 gi|170716110|gb|EDT28292.1| sensor histidine kinase [Clostridium perfringens CPE str. F4969]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 19/81 (23%)

Query: 30  LIENSLDAESSR-------VETVIAGG--GKSFFQITDNGFGMTSEEIPMAVQRHCTSKI 80
           L+EN     +++       +   +     G+++F I DNG GM   ++P   +R      
Sbjct: 316 LVEN-----ATKYTEEGEIITLKVGENSKGEAYFSIQDNGIGMDENDVPHIFERF----F 366

Query: 81  SDDFSNIHTFGFRGEALPSIG 101
             D S +   G  G  L SI 
Sbjct: 367 RADTSRVRKNGGTGLGL-SIA 386


>gi|121534284|ref|ZP_01666108.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Thermosinus carboxydivorans Nor1]
 gi|121307054|gb|EAX47972.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Thermosinus carboxydivorans Nor1]
          Length = 635

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 30  LIENSLDAES------SRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSK 79
           LI N+++A +        VE  I+ G K     +TD G G+  E+     +R  ++K
Sbjct: 497 LITNAIEAVAGQTAERRCVEVRISQGSKFLRISVTDRGCGIPQEKRQRIFERGFSTK 553


>gi|21309845|gb|AAM46064.1|AF263924_3 DNA gyrase beta subunit [Peanut witches'-broom phytoplasma]
          Length = 648

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+I+NS+D   A  ++ +   I     +   ++DNG G+  +
Sbjct: 51 EIIDNSIDEALAGYATEIILKIFPD--NVVSVSDNGRGIPVD 90


>gi|17231039|ref|NP_487587.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132680|dbj|BAB75246.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 458

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 34/94 (36%)

Query: 20  IERPSIAIKE--------------------LIENSLDA--ES--------SR----VETV 45
           I  P   IKE                    L+ N++DA  E+        ++    + T 
Sbjct: 315 ITHPINVIKEYENLPLVDCYAGLLNQVFMNLLSNAIDALEEAIVKYSGMVTKPQIIIRTE 374

Query: 46  IAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           I    +   +I DNG G+  E          T+K
Sbjct: 375 IIDDQQVVIRIADNGIGIPEEAKQRLFDPFFTTK 408


>gi|304319868|ref|YP_003853511.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503]
 gi|303298771|gb|ADM08370.1| DNA gyrase subunit B [Parvularcula bermudensis HTCC2503]
          Length = 770

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 27 IKELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          + E+++N++D   A     V   +   G     ++DNG G+ +E
Sbjct: 16 VYEVVDNAIDEALAGYCDTVTVALNADG--SVSVSDNGRGIPTE 57


>gi|320353854|ref|YP_004195193.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122356|gb|ADW17902.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 816

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 7   SEKIINQIAAGEIIERPSIAIKELIENSLDA-----ESSRVETVIAGGGKSFFQITDNGF 61
            E+++ ++  GE        +  L+ N+LDA        R    +     +  ++ DNG 
Sbjct: 684 PERLVVRMGVGE----LEQVLSNLMINALDAVDQHTGLVRARVAVVDDDMAILEVEDNGP 739

Query: 62  GMTSEEIPMAVQRHCTSK 79
           G+++++         ++K
Sbjct: 740 GVSADDAAHIFDPFYSTK 757


>gi|298488716|ref|ZP_07006745.1| Sensor histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156789|gb|EFH97880.1| Sensor histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 643

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 19/71 (26%)

Query: 21  ERPSIAIKELIENSLDA------------ESSRVETVIAGGGKSFFQITDNGFGMTSEEI 68
            R    +  LI N+LDA             S      I   G+   ++ DNG G+ ++  
Sbjct: 519 TRLEQILVNLIGNALDAMFNQPAPELWLTGS------IED-GRYRLRVRDNGHGIDTKTR 571

Query: 69  PMAVQRHCTSK 79
               +   T+K
Sbjct: 572 KHLFEPFFTTK 582


>gi|300087595|ref|YP_003758117.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527328|gb|ADJ25796.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 30  LIENSLDAESSR---VE-TVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHC 76
           LIEN++  +++    V  T+    G     + D G G+  +++     R  
Sbjct: 358 LIENAV--KATSKGGVTFTMTESSGMITITVADTGCGIPPDQLEKIFWRFY 406


>gi|255525554|ref|ZP_05392489.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255510738|gb|EET87043.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 419

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 31  IENSLDAESSR----VETVIAGG-GKSFFQITDNGFGMTSEEIPMAVQRHC 76
           IEN++  + ++    ++  I      +   I DNG G+  EEI    +R  
Sbjct: 318 IENAI--KYTKKGGKIKITINKMETCTRIDIKDNGIGIEEEEINNVFKRFY 366


>gi|241204755|ref|YP_002975851.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858645|gb|ACS56312.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 699

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  ++ +E  +   G  +  ++DNG G+  E  P
Sbjct: 96  EVIDNAMDEAVAGHANFIEVYLDLEG--YLTVSDNGRGIPVENHP 138


>gi|192360461|ref|YP_001980528.1| DNA gyrase subunit B [Cellvibrio japonicus Ueda107]
 gi|190686626|gb|ACE84304.1| DNA gyrase, B subunit [Cellvibrio japonicus Ueda107]
          Length = 806

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++NS+D   A   + V   I         ++DNG G+  +
Sbjct: 44 EVVDNSIDEALAGYCTEVRVTIHPD--ETVSVSDNGRGIPVD 83


>gi|217976516|ref|YP_002360663.1| integral membrane sensor signal transduction histidine kinase
           [Methylocella silvestris BL2]
 gi|217501892|gb|ACK49301.1| integral membrane sensor signal transduction histidine kinase
           [Methylocella silvestris BL2]
          Length = 444

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 30  LIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
           LIEN++D  S+ V         +    I D+G G + E +  A   + T+K
Sbjct: 326 LIENAIDFASNEVRIDASWDLSRVKLVIEDDGPGFSPEVLSRAGAPYVTTK 376


>gi|209549430|ref|YP_002281347.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535186|gb|ACI55121.1| DNA topoisomerase IV, B subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 704

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  ++ +E  +   G  +  ++DNG G+  E  P
Sbjct: 101 EVIDNAMDEAVAGHANFIEVYLDLEG--YLTVSDNGRGIPVENHP 143


>gi|162456449|ref|YP_001618816.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
 gi|161167031|emb|CAN98336.1| DNA gyrase subunit B [Sorangium cellulosum 'So ce 56']
          Length = 832

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 29 ELIENSLD---AES-SRVETVIAGGGKSFFQITDNGFGMT 64
          E ++N++D   A + + +   +   G     I DNG G+ 
Sbjct: 54 EAVDNAVDEHLAGACTEIRVTVHFDG--SVSIEDNGRGIP 91


>gi|124025686|ref|YP_001014802.1| heat shock protein 90 [Prochlorococcus marinus str. NATL1A]
 gi|123960754|gb|ABM75537.1| heat shock protein HtpG [Prochlorococcus marinus str. NATL1A]
          Length = 634

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 33/118 (27%)

Query: 27  IKELIENSLDA--------------ESS--RVETVIAGGGKSFFQITDNGFGMTSEEIPM 70
           I+ELI NS+DA               +   +++  I    K+   I+DNG GMTS+EI  
Sbjct: 32  IRELISNSVDAIKKRKMAAFAGDCVAADDEKIKISIDREHKTL-TISDNGIGMTSDEIKK 90

Query: 71  AVQRHCTS---------KISDDFSNIHT-FGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            + +   S         K  DD    H   GF      S   V+  + ++++  +N++
Sbjct: 91  YINQVAFSSAEEFLEKYKQPDDGFIGHFGLGF-----YSSFMVAEEVEIITKSAKNDS 143


>gi|116252261|ref|YP_768099.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256909|emb|CAK08003.1| putative DNA gyrase subunit B [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 700

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSEEIP 69
           E+I+N++D   A  ++ +E  +   G  +  ++DNG G+  E  P
Sbjct: 97  EVIDNAMDEAVAGHANFIEVYLDLEG--YLTVSDNGRGIPVENHP 139


>gi|91205810|ref|YP_538165.1| DNA gyrase subunit B [Rickettsia bellii RML369-C]
 gi|157827062|ref|YP_001496126.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389]
 gi|123266189|sp|Q1RHT8|GYRB_RICBR RecName: Full=DNA gyrase subunit B
 gi|91069354|gb|ABE05076.1| DNA gyrase subunit B [Rickettsia bellii RML369-C]
 gi|157802366|gb|ABV79089.1| DNA gyrase subunit B [Rickettsia bellii OSU 85-389]
          Length = 808

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V  V+   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDEALAGYCDLVRVVLNKNG--SVTVSDNGRGIPVE 89


>gi|118346325|ref|XP_977223.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Tetrahymena thermophila]
 gi|89288408|gb|EAR86396.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Tetrahymena thermophila SB210]
          Length = 1220

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 36  DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQ 73
           DA + RV +V+         ++D G G+  + +   +Q
Sbjct: 671 DAGTIRVNSVVENFDLIRIDVSDTGCGIPEDNLEKVLQ 708


>gi|85716303|ref|ZP_01047276.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
 gi|85696819|gb|EAQ34704.1| gram negative topoisomerase IV, subunit B [Nitrobacter sp. Nb-311A]
          Length = 681

 Score = 40.8 bits (94), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 6/42 (14%)

Query: 29  ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
           E+I+N++D   A  ++ +   +A  G  F  +TDNG G+  +
Sbjct: 74  EVIDNAMDEALAGHATFIVVELATDG--FLTVTDNGRGIPVD 113


>gi|254518871|ref|ZP_05130927.1| signal transduction histidine-protein kinase arlS [Clostridium sp.
           7_2_43FAA]
 gi|226912620|gb|EEH97821.1| signal transduction histidine-protein kinase arlS [Clostridium sp.
           7_2_43FAA]
          Length = 169

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 31  IENSL---DAESSRVETVI---AGGGKSFFQITDNGFGMTSEEIPMAVQR 74
           I+NS+   D E   +E  I       K   ++ DNG G+  +EI   ++R
Sbjct: 72  IDNSIKYNDKE--NIEIEISLLKENSKIRLEVKDNGIGIPKDEIKNVMKR 119


>gi|206889206|ref|YP_002249288.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741144|gb|ACI20201.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 884

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 38  ESSRVETVIAGGGKS--FFQITDNGFGMTSEEIPMAVQRHCTSKIS 81
           ++ ++   I    K     ++ D G G+  E +        T+KIS
Sbjct: 789 KADKLPVEIPDIQKEYLLIEVEDTGCGIQKENLKRIFDPFFTTKIS 834


>gi|197118369|ref|YP_002138796.1| GAF domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197087729|gb|ACH39000.1| sensor histidine kinase, GAF domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 552

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 54  FQITDNGFGMTSEEIPMAVQRHCTSK 79
             + DNG G+  E +        TSK
Sbjct: 482 LSVADNGIGIAKENLSKIFTPFYTSK 507


>gi|126736725|ref|ZP_01752464.1| periplasmic sensor signal transduction histidine kinase
           [Roseobacter sp. CCS2]
 gi|126713840|gb|EBA10712.1| periplasmic sensor signal transduction histidine kinase
           [Roseobacter sp. CCS2]
          Length = 430

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 27  IKELIENSLDAESSRVETVI-AGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           ++ L+ N+    +  +E  I    G++   + D G G+   +     +R 
Sbjct: 315 VRNLVTNAEKHGAHPIEVEITQKSGETTLSVRDAGKGIPIADREKVFERF 364


>gi|300311127|ref|YP_003775219.1| HSP90 family high temperature molecular chaperone G protein
          [Herbaspirillum seropedicae SmR1]
 gi|124483510|emb|CAM32628.1| HSP90 family high temperature [Herbaspirillum seropedicae]
 gi|300073912|gb|ADJ63311.1| HSP90 family high temperature molecular chaperone G protein
          [Herbaspirillum seropedicae SmR1]
          Length = 636

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 19/60 (31%)

Query: 27 IKELIENSLDA----------ESS--------RVETVIAGGGKSFFQITDNGFGMTSEEI 68
          ++EL+ N+ DA           +S        ++        ++   I+DNG GM  EE 
Sbjct: 33 LRELVSNASDAADKLRFEAINNASLFEDDPELKIRISFDKAART-ITISDNGIGMNREEA 91


>gi|27467084|ref|NP_763721.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|81844164|sp|Q8CU03|Y166_STAES RecName: Full=Uncharacterized sensor-like histidine kinase SE_0166
 gi|27314626|gb|AAO03763.1|AE016744_166 two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|329733724|gb|EGG70051.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU028]
 gi|329737760|gb|EGG73999.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 512

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 30  LIENSL----DAESSRVETVIAGGGKSF-FQITDNGFGMTSEEIPMAVQRHCTSKISDDF 84
           L+EN++    D+E  ++   I    +     + DNG GM+   +    Q      +  D 
Sbjct: 414 LVENAIKHGRDSEPLKITIRIRLTKRKLHILVHDNGIGMSPSHLEHVRQ-----SLHHDV 468

Query: 85  SNIHTFG 91
            +    G
Sbjct: 469 FDTTHLG 475


>gi|94314228|ref|YP_587437.1| sensor histidine kinase [Cupriavidus metallidurans CH34]
 gi|93358080|gb|ABF12168.1| sensor histidine kinase with GAF domain [Cupriavidus metallidurans
            CH34]
          Length = 1744

 Score = 40.8 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 9/58 (15%)

Query: 30   LIENSLDAESSR--------VETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCTSK 79
            LI N++DA ++         + + +        ++ D G G+             TSK
Sbjct: 1641 LITNAIDAMATTPPDARDLVIASALENADV-VIRVEDAGRGIPDAMRQRLFDPFITSK 1697


>gi|301597598|ref|ZP_07242606.1| putative two-component regulatory system [Acinetobacter baumannii
           AB059]
          Length = 616

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 25  IAIKELIENSLDAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRHCT----SKI 80
            A+ EL +N+ DA +  VE       K+   + DNG GMT  E      R  T    SK 
Sbjct: 24  TALSELFKNAHDAYADNVEVDYIR-KKNLLILRDNGLGMTRAEFE---DRWLTIGTDSKF 79

Query: 81  SDDFSNIH------------TFGFRGEALPSIGAVS-HLTLMSRPPQNNT 117
            +D   I               G +G    +I A+   + +M+R  ++N 
Sbjct: 80  -EDEDAIEKPAIDINKDKRPVMGEKGIGRLAIAAIGPQVLVMTRSKRDNE 128


>gi|296140966|ref|YP_003648209.1| integral membrane sensor signal transduction histidine kinase
           [Tsukamurella paurometabola DSM 20162]
 gi|296029100|gb|ADG79870.1| integral membrane sensor signal transduction histidine kinase
           [Tsukamurella paurometabola DSM 20162]
          Length = 478

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 40  SRVETVIAGGGKSF--FQITDNGFGMTSEEIPMAVQRHCTS 78
           S V   +A  G       ++D+G G+  E+  +  +R   S
Sbjct: 369 STVRVTLADTGVDRAALTVSDSGPGIPEEDRELVFERFYRS 409


>gi|288803895|ref|ZP_06409320.1| sensor histidine kinase [Prevotella melaninogenica D18]
 gi|288333660|gb|EFC72110.1| sensor histidine kinase [Prevotella melaninogenica D18]
          Length = 388

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 26  AIKELIENSLDA-----ESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
            I+ L +N++DA      S  +   +    K    +++D G G+  ++I    +   T+K
Sbjct: 288 VIENLCKNAVDAMGGKIGS--ITLRLEETDKRAIVEVSDTGKGIKKKDIRNVFRPGFTTK 345


>gi|317127293|ref|YP_004093575.1| histidine kinase [Bacillus cellulosilyticus DSM 2522]
 gi|315472241|gb|ADU28844.1| histidine kinase [Bacillus cellulosilyticus DSM 2522]
          Length = 577

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 30  LIENSLDA--ESSRVETVIAGGGKSFFQ--ITDNGFGMTSEEIPMAVQRHCTSK 79
           L++N+++A  E   ++  +   G +  Q  + D+G G+  E +    +   T+K
Sbjct: 475 LVKNAIEAMQEGGNIKIKVERIG-NIIQAKVIDHGSGIPEELLSKIGEPFYTTK 527


>gi|238650642|ref|YP_002916494.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic]
 gi|238624740|gb|ACR47446.1| DNA gyrase subunit B [Rickettsia peacockii str. Rustic]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V   +   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDESLAGYCDLVRVTLNKNG--SVTVSDNGRGIPVE 89


>gi|213964095|ref|ZP_03392336.1| chaperone protein HtpG [Capnocytophaga sputigena Capno]
 gi|213953274|gb|EEB64615.1| chaperone protein HtpG [Capnocytophaga sputigena Capno]
          Length = 631

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 83/285 (29%), Gaps = 50/285 (17%)

Query: 27  IKELIENSLDA-----------ESSR------VETVIAGGGKSFFQITDNGFGMTSEEIP 69
           ++ELI N+ DA           E+        +E  +    K+   I D G GMT+EE+ 
Sbjct: 28  LRELISNATDATLKLKHLTSIGEAKVEYGNPIIEVKVDKDNKTL-HIIDQGIGMTAEEVE 86

Query: 70  MAVQRHCTS-------KISDDFSNIHTFGFRGEALPSIGAVSH-LTLMSRPPQNNTGAQI 121
             + +   S       K  D   +    G  G    S   V+  + ++++   +    + 
Sbjct: 87  KYINQIAFSGAEEFLEKYKDTAKDAGVIGHFGLGFYSAFMVAKQVEIITKSYTDAPAVRW 146

Query: 122 AISGEKISSVRPVAMNP--GTIVEV------RDLFFTIPARLNFLKSEQVETNLITDVIR 173
              G    ++    +    GT + +       +            K  +     I    +
Sbjct: 147 VCDGSPEFTLEETDLRAERGTEIILHIADDSTEFLEDFRIEELLRKYNRFMPIPIKFGTK 206

Query: 174 RMAIAYP-----KVSFTFSTIKSN-------RYKMNFQSTNGNFPERISQVIGEDFINNA 221
           +  +  P          + T+ +          K      + ++     ++    F    
Sbjct: 207 QEPLPRPENAPDDYKTEYVTVDNIVNNPNPAWTKQPADLKDEDYKAFYHELYPMQFDEPL 266

Query: 222 VELN-EKSNEITLQGYTGIPTFNRGN---ANQFYVFINGRTVQDK 262
             ++        L G    P          ++  ++ N   V D 
Sbjct: 267 FHIHLNVDYPFHLTGILYFPKLTNDMQLQKDRIQLYQNQVFVTDN 311


>gi|190889698|ref|YP_001976240.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190694977|gb|ACE89062.1| two-component sensor histidine kinase protein [Rhizobium etli CIAT
           652]
          Length = 436

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 30  LIENSLDAESSRVETVIA-GGGKSFFQITDNGFGMTSEEIPMAVQRHCTSKISDD 83
           LIEN++D    +V   +     K    I D+G G + E +    + + T +  +D
Sbjct: 330 LIENAVDYAREKVTITVEHDHDKVLIVIEDDGNGYSPEILTRIGEPYVTKRQKED 384


>gi|229586917|ref|YP_002845418.1| DNA gyrase subunit B [Rickettsia africae ESF-5]
 gi|228021967|gb|ACP53675.1| DNA gyrase subunit B [Rickettsia africae ESF-5]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V   +   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDESLAGYCDLVRVTLNKNG--SVTVSDNGRGIPVE 89


>gi|67459339|ref|YP_246963.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2]
 gi|75536235|sp|Q4UKX5|GYRB_RICFE RecName: Full=DNA gyrase subunit B
 gi|67004872|gb|AAY61798.1| DNA gyrase subunit B [Rickettsia felis URRWXCal2]
          Length = 808

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V   +   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDESLAGYCDLVRVTLNKNG--SVTVSDNGRGIPVE 89


>gi|42524723|ref|NP_970103.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576933|emb|CAE78162.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 626

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 30  LIENSL-----DAESSRVETVIAGGGKSFF-QITDNGFGMTSEEIPMAVQRHCTSK 79
           L+EN++     D   +++             Q+ D G G+  +E+     +   SK
Sbjct: 521 LVENAIKYSPED---TKIMVSSEETPSKVIVQVADQGPGIPQDELQNIFMKFFRSK 573


>gi|15892807|ref|NP_360521.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
 gi|20138262|sp|Q92H87|GYRB_RICCN RecName: Full=DNA gyrase subunit B
 gi|15619989|gb|AAL03422.1| DNA gyrase subunit B [Rickettsia conorii str. Malish 7]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V   +   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDESLAGYCDLVRVTLNKNG--SVTVSDNGRGIPVE 89


>gi|85713830|ref|ZP_01044820.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699734|gb|EAQ37601.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 456

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 30  LIENSL--DAESSRVETVIAGGGKSFFQITDNGFGMTSEEIPMAVQRH 75
           L+EN++    + + +E +++  G     + DNG G+   +     QR 
Sbjct: 359 LVENAIHHTPQGTSIELIVSTDG--SISVIDNGDGVPWADREFIFQRF 404


>gi|157828742|ref|YP_001494984.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933470|ref|YP_001650259.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa]
 gi|157801223|gb|ABV76476.1| DNA gyrase subunit B [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908557|gb|ABY72853.1| DNA gyrase subunit B [Rickettsia rickettsii str. Iowa]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V   +   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDESLAGYCDLVRVTLNKNG--SVTVSDNGRGIPVE 89


>gi|34581483|ref|ZP_00142963.1| DNA gyrase subunit B [Rickettsia sibirica 246]
 gi|28262868|gb|EAA26372.1| DNA gyrase subunit B [Rickettsia sibirica 246]
          Length = 807

 Score = 40.8 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 29 ELIENSLD---AE-SSRVETVIAGGGKSFFQITDNGFGMTSE 66
          E+++N++D   A     V   +   G     ++DNG G+  E
Sbjct: 50 EVVDNAIDESLAGYCDLVRVTLNKNG--SVTVSDNGRGIPVE 89


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.135    0.408 

Lambda     K      H
   0.267   0.0413    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,923,653,648
Number of Sequences: 14124377
Number of extensions: 319903195
Number of successful extensions: 779360
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 4415
Number of HSP's successfully gapped in prelim test: 9892
Number of HSP's that attempted gapping in prelim test: 755847
Number of HSP's gapped (non-prelim): 17625
length of query: 594
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 449
effective length of database: 2,794,758,965
effective search space: 1254846775285
effective search space used: 1254846775285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 84 (37.0 bits)